Query 010200
Match_columns 515
No_of_seqs 237 out of 2918
Neff 9.4
Searched_HMMs 46136
Date Thu Mar 28 22:13:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010200.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010200hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK08013 oxidoreductase; Provi 100.0 5E-52 1.1E-56 425.0 45.1 395 54-510 2-398 (400)
2 PRK08850 2-octaprenyl-6-methox 100.0 2.3E-51 4.9E-56 421.2 44.3 389 54-506 3-394 (405)
3 PRK08773 2-octaprenyl-3-methyl 100.0 8.4E-51 1.8E-55 415.6 44.3 388 53-504 4-392 (392)
4 PRK05714 2-octaprenyl-3-methyl 100.0 5.8E-51 1.2E-55 418.6 42.7 395 55-510 2-402 (405)
5 TIGR01989 COQ6 Ubiquinone bios 100.0 1.4E-50 3E-55 418.3 44.2 427 56-498 1-437 (437)
6 PRK06617 2-octaprenyl-6-methox 100.0 1E-50 2.2E-55 411.6 42.3 370 56-504 2-373 (374)
7 PRK07364 2-octaprenyl-6-methox 100.0 1.9E-49 4.1E-54 409.0 45.2 388 52-506 15-406 (415)
8 PRK08849 2-octaprenyl-3-methyl 100.0 4.2E-49 9E-54 401.4 44.7 381 55-504 3-384 (384)
9 COG0654 UbiH 2-polyprenyl-6-me 100.0 2.8E-49 6.1E-54 402.5 42.8 381 55-505 2-386 (387)
10 PRK07333 2-octaprenyl-6-methox 100.0 1.6E-48 3.6E-53 400.6 44.5 390 56-511 2-398 (403)
11 PRK08020 ubiF 2-octaprenyl-3-m 100.0 2.5E-48 5.5E-53 397.4 44.5 388 53-504 3-391 (391)
12 PRK07494 2-octaprenyl-6-methox 100.0 2.1E-48 4.7E-53 397.5 41.7 381 51-505 3-388 (388)
13 PRK06996 hypothetical protein; 100.0 6.2E-48 1.4E-52 394.5 44.0 379 51-502 7-393 (398)
14 PRK09126 hypothetical protein; 100.0 7.1E-48 1.5E-52 394.3 40.7 389 54-505 2-391 (392)
15 TIGR01988 Ubi-OHases Ubiquinon 100.0 3.7E-47 8E-52 388.3 44.3 384 57-503 1-385 (385)
16 TIGR01984 UbiH 2-polyprenyl-6- 100.0 3.6E-46 7.8E-51 380.5 43.4 379 57-503 1-382 (382)
17 PRK05732 2-octaprenyl-6-methox 100.0 7.6E-46 1.7E-50 379.8 44.2 390 54-504 2-392 (395)
18 PRK07608 ubiquinone biosynthes 100.0 1.5E-45 3.2E-50 376.7 44.3 384 54-503 4-388 (388)
19 PRK06185 hypothetical protein; 100.0 1.7E-46 3.6E-51 386.0 35.9 384 52-501 3-391 (407)
20 PRK06183 mhpA 3-(3-hydroxyphen 100.0 9.6E-44 2.1E-48 376.6 41.0 378 53-505 8-394 (538)
21 KOG3855 Monooxygenase involved 100.0 2.1E-44 4.5E-49 342.5 28.2 434 54-504 35-480 (481)
22 PRK07588 hypothetical protein; 100.0 1.3E-43 2.9E-48 362.3 35.5 379 56-506 1-385 (391)
23 PRK06834 hypothetical protein; 100.0 5.7E-43 1.2E-47 364.2 40.5 368 54-505 2-371 (488)
24 PRK08244 hypothetical protein; 100.0 9.8E-43 2.1E-47 365.8 40.9 373 55-506 2-379 (493)
25 PRK07045 putative monooxygenas 100.0 2.2E-42 4.7E-47 353.0 36.2 371 53-488 3-377 (388)
26 PRK08243 4-hydroxybenzoate 3-m 100.0 1.2E-41 2.6E-46 347.5 39.6 378 55-505 2-389 (392)
27 PRK06753 hypothetical protein; 100.0 2.3E-41 5E-46 343.9 34.8 353 56-488 1-357 (373)
28 PRK08132 FAD-dependent oxidore 100.0 2.1E-40 4.6E-45 352.0 42.6 369 53-497 21-399 (547)
29 PRK08294 phenol 2-monooxygenas 100.0 2.1E-40 4.6E-45 353.9 41.0 354 52-473 29-416 (634)
30 PRK06847 hypothetical protein; 100.0 1.4E-40 3E-45 338.5 37.6 364 54-488 3-373 (375)
31 PRK06184 hypothetical protein; 100.0 9.9E-41 2.1E-45 351.2 37.7 340 54-470 2-353 (502)
32 PLN02985 squalene monooxygenas 100.0 9.4E-41 2E-45 348.2 33.9 399 52-511 40-444 (514)
33 PRK06475 salicylate hydroxylas 100.0 1.1E-40 2.4E-45 341.4 33.7 353 56-487 3-377 (400)
34 PRK07190 hypothetical protein; 100.0 1.1E-39 2.5E-44 339.0 40.5 338 54-470 4-348 (487)
35 PRK08163 salicylate hydroxylas 100.0 4.2E-40 9.1E-45 337.4 35.8 360 54-487 3-373 (396)
36 PRK05868 hypothetical protein; 100.0 1.3E-39 2.9E-44 329.2 33.7 358 56-485 2-368 (372)
37 TIGR02360 pbenz_hydroxyl 4-hyd 100.0 1.2E-38 2.5E-43 324.7 38.8 378 55-504 2-388 (390)
38 PF01494 FAD_binding_3: FAD bi 100.0 3.7E-40 8E-45 332.6 26.8 334 56-462 2-356 (356)
39 PTZ00367 squalene epoxidase; P 100.0 4.5E-39 9.7E-44 336.9 35.5 391 54-511 32-458 (567)
40 PRK06126 hypothetical protein; 100.0 1.6E-38 3.5E-43 338.0 37.4 343 52-470 4-376 (545)
41 PRK07538 hypothetical protein; 100.0 1.1E-38 2.3E-43 328.1 33.8 341 56-464 1-361 (413)
42 TIGR03219 salicylate_mono sali 100.0 1.4E-38 3.1E-43 327.4 28.5 350 56-477 1-381 (414)
43 PRK07236 hypothetical protein; 100.0 7E-38 1.5E-42 319.3 31.7 338 54-471 5-377 (386)
44 PLN02927 antheraxanthin epoxid 100.0 6.6E-36 1.4E-40 314.1 34.0 370 52-485 78-469 (668)
45 KOG2614 Kynurenine 3-monooxyge 100.0 1.6E-34 3.5E-39 277.8 24.3 329 55-456 2-362 (420)
46 PLN00093 geranylgeranyl diphos 100.0 1.7E-32 3.6E-37 282.0 36.9 338 51-475 35-390 (450)
47 TIGR02023 BchP-ChlP geranylger 100.0 2.3E-31 5.1E-36 271.3 35.4 322 56-473 1-339 (388)
48 TIGR02028 ChlP geranylgeranyl 100.0 3.7E-30 8.1E-35 262.4 37.3 331 56-473 1-349 (398)
49 TIGR02032 GG-red-SF geranylger 100.0 3.2E-30 7E-35 253.4 28.7 287 56-428 1-295 (295)
50 COG0644 FixC Dehydrogenases (f 100.0 4.5E-29 9.7E-34 254.6 35.8 334 54-470 2-340 (396)
51 PRK11445 putative oxidoreducta 100.0 1.1E-29 2.4E-34 255.2 30.4 307 56-455 2-317 (351)
52 PRK08255 salicylyl-CoA 5-hydro 100.0 4.1E-30 8.9E-35 281.2 26.7 329 56-472 1-342 (765)
53 KOG1298 Squalene monooxygenase 100.0 7.8E-30 1.7E-34 240.5 23.8 399 51-511 41-444 (509)
54 PRK10015 oxidoreductase; Provi 100.0 4E-28 8.6E-33 249.3 31.8 348 54-472 4-374 (429)
55 PRK10157 putative oxidoreducta 100.0 8.4E-27 1.8E-31 239.8 31.9 343 54-471 4-372 (428)
56 PF04820 Trp_halogenase: Trypt 99.9 1.4E-25 3.1E-30 231.0 27.2 340 57-480 1-397 (454)
57 TIGR01790 carotene-cycl lycope 99.9 2.7E-24 5.8E-29 219.8 35.1 304 57-457 1-321 (388)
58 PLN02697 lycopene epsilon cycl 99.9 3.9E-23 8.4E-28 214.6 30.9 313 53-462 106-447 (529)
59 PLN02463 lycopene beta cyclase 99.9 1.3E-21 2.9E-26 200.4 34.4 288 52-436 25-336 (447)
60 TIGR01789 lycopene_cycl lycope 99.9 2.2E-20 4.8E-25 188.2 28.6 303 57-464 1-316 (370)
61 PF05834 Lycopene_cycl: Lycope 99.9 1E-18 2.2E-23 176.9 30.6 277 57-430 1-290 (374)
62 PF08491 SE: Squalene epoxidas 99.8 9.1E-19 2E-23 163.3 17.0 244 237-511 2-247 (276)
63 KOG2415 Electron transfer flav 99.8 2.5E-17 5.4E-22 157.7 24.8 371 51-472 72-464 (621)
64 COG2081 Predicted flavoprotein 99.6 6.9E-15 1.5E-19 142.4 11.4 163 54-249 2-168 (408)
65 PRK04176 ribulose-1,5-biphosph 99.6 8.4E-14 1.8E-18 132.8 15.3 147 54-254 24-179 (257)
66 TIGR00292 thiazole biosynthesi 99.5 1.2E-13 2.7E-18 131.2 15.1 148 54-254 20-176 (254)
67 TIGR01377 soxA_mon sarcosine o 99.5 5E-12 1.1E-16 128.9 24.5 72 166-259 140-212 (380)
68 COG1635 THI4 Ribulose 1,5-bisp 99.4 2.3E-12 5E-17 114.3 14.5 146 55-254 30-184 (262)
69 PF01946 Thi4: Thi4 family; PD 99.4 1.3E-12 2.8E-17 116.9 11.9 147 54-254 16-171 (230)
70 PF03486 HI0933_like: HI0933-l 99.4 1.1E-12 2.4E-17 132.7 12.3 152 56-249 1-167 (409)
71 TIGR01373 soxB sarcosine oxida 99.4 3.3E-11 7.3E-16 124.0 20.9 115 167-304 179-294 (407)
72 PRK13369 glycerol-3-phosphate 99.4 6.3E-11 1.4E-15 124.8 21.9 113 167-300 151-270 (502)
73 PRK12266 glpD glycerol-3-phosp 99.4 2.9E-11 6.3E-16 127.3 19.2 62 167-249 151-217 (508)
74 PRK11259 solA N-methyltryptoph 99.4 1.7E-10 3.8E-15 117.4 24.2 61 167-249 145-205 (376)
75 PRK11728 hydroxyglutarate oxid 99.4 4.5E-11 9.7E-16 122.4 19.8 70 166-257 144-214 (393)
76 PRK12409 D-amino acid dehydrog 99.3 1.6E-10 3.5E-15 119.0 23.2 67 168-255 194-266 (410)
77 PF01266 DAO: FAD dependent ox 99.3 5.7E-12 1.2E-16 127.0 11.8 64 165-250 141-205 (358)
78 PRK01747 mnmC bifunctional tRN 99.3 1.5E-10 3.2E-15 126.2 21.0 61 167-249 404-464 (662)
79 PRK00711 D-amino acid dehydrog 99.3 2.7E-10 5.9E-15 117.6 20.7 61 167-249 197-258 (416)
80 COG0579 Predicted dehydrogenas 99.2 1E-10 2.2E-15 117.4 13.3 181 54-258 2-222 (429)
81 PLN02464 glycerol-3-phosphate 99.2 6.9E-10 1.5E-14 119.3 19.4 71 167-255 228-304 (627)
82 PRK05192 tRNA uridine 5-carbox 99.2 1.3E-10 2.7E-15 121.6 13.1 156 53-250 2-159 (618)
83 COG3380 Predicted NAD/FAD-depe 99.2 6.6E-10 1.4E-14 101.9 16.1 152 57-245 3-157 (331)
84 PF13738 Pyr_redox_3: Pyridine 99.2 3.4E-11 7.3E-16 111.4 7.8 137 59-249 1-139 (203)
85 PRK05257 malate:quinone oxidor 99.2 8.8E-10 1.9E-14 115.0 17.6 73 166-257 178-256 (494)
86 PTZ00383 malate:quinone oxidor 99.2 1E-09 2.2E-14 114.2 17.3 71 166-256 206-282 (497)
87 PLN02172 flavin-containing mon 99.2 3.9E-10 8.4E-15 116.8 14.0 158 52-249 7-174 (461)
88 TIGR01320 mal_quin_oxido malat 99.2 6.7E-10 1.5E-14 115.8 15.8 72 166-257 173-250 (483)
89 COG0578 GlpA Glycerol-3-phosph 99.2 2E-09 4.4E-14 110.3 18.7 169 53-255 10-233 (532)
90 KOG2820 FAD-dependent oxidored 99.1 3.4E-10 7.4E-15 106.8 11.5 175 51-247 3-211 (399)
91 PLN02661 Putative thiazole syn 99.1 1E-09 2.3E-14 107.2 15.1 144 54-250 91-246 (357)
92 PLN02612 phytoene desaturase 99.1 5.9E-08 1.3E-12 103.5 29.5 74 52-129 90-169 (567)
93 COG0665 DadA Glycine/D-amino a 99.1 4.6E-09 1E-13 107.3 20.2 64 167-251 152-215 (387)
94 PRK11101 glpA sn-glycerol-3-ph 99.1 5E-10 1.1E-14 119.0 11.9 70 166-256 144-220 (546)
95 PRK12416 protoporphyrinogen ox 99.1 1.4E-08 3E-13 106.3 22.7 74 57-130 3-83 (463)
96 PRK13339 malate:quinone oxidor 99.1 1.3E-09 2.8E-14 113.0 14.4 73 166-257 179-257 (497)
97 TIGR00562 proto_IX_ox protopor 99.1 3.5E-08 7.5E-13 103.4 24.5 75 56-130 3-82 (462)
98 TIGR00275 flavoprotein, HI0933 99.1 3.5E-10 7.5E-15 115.6 9.1 156 59-248 1-160 (400)
99 PF01134 GIDA: Glucose inhibit 99.1 1.2E-09 2.5E-14 108.6 12.2 148 57-248 1-152 (392)
100 PF12831 FAD_oxidored: FAD dep 99.1 6.5E-11 1.4E-15 122.1 3.5 154 57-255 1-156 (428)
101 PRK07233 hypothetical protein; 99.1 5.2E-08 1.1E-12 101.2 25.3 69 57-129 1-74 (434)
102 PRK06481 fumarate reductase fl 99.1 1.6E-09 3.5E-14 114.2 13.7 40 52-95 58-97 (506)
103 TIGR03329 Phn_aa_oxid putative 99.1 1.2E-09 2.7E-14 113.9 12.4 61 166-249 178-238 (460)
104 TIGR03364 HpnW_proposed FAD de 99.0 9.4E-10 2E-14 111.5 10.6 58 166-249 140-198 (365)
105 TIGR01292 TRX_reduct thioredox 99.0 2.6E-09 5.7E-14 105.0 12.5 113 56-249 1-113 (300)
106 PRK11883 protoporphyrinogen ox 99.0 1.5E-07 3.3E-12 98.2 26.4 70 57-128 2-76 (451)
107 PRK07804 L-aspartate oxidase; 99.0 6.2E-09 1.3E-13 110.5 15.4 40 52-95 13-52 (541)
108 PRK08274 tricarballylate dehyd 99.0 3.4E-09 7.4E-14 111.0 12.5 37 53-93 2-38 (466)
109 KOG1399 Flavin-containing mono 99.0 3.1E-09 6.7E-14 108.2 11.4 137 54-248 5-153 (448)
110 TIGR02730 carot_isom carotene 99.0 9.1E-08 2E-12 100.9 22.9 65 171-255 229-293 (493)
111 COG2072 TrkA Predicted flavopr 99.0 4.2E-09 9E-14 108.7 12.3 135 52-249 5-145 (443)
112 TIGR01813 flavo_cyto_c flavocy 99.0 4.5E-09 9.7E-14 109.3 12.5 63 170-249 129-193 (439)
113 TIGR02734 crtI_fam phytoene de 99.0 2.3E-07 5E-12 98.2 25.5 64 171-254 219-282 (502)
114 PRK07121 hypothetical protein; 98.9 1.9E-08 4.2E-13 106.0 16.6 39 53-95 18-56 (492)
115 PRK09231 fumarate reductase fl 98.9 1.3E-08 2.9E-13 108.8 14.9 64 171-251 133-199 (582)
116 PRK15317 alkyl hydroperoxide r 98.9 9.4E-09 2E-13 108.8 13.3 115 53-249 209-323 (517)
117 TIGR02731 phytoene_desat phyto 98.9 6.8E-07 1.5E-11 93.4 27.1 69 57-129 1-75 (453)
118 TIGR01176 fum_red_Fp fumarate 98.9 2.6E-08 5.5E-13 106.4 15.8 64 170-250 131-197 (580)
119 COG0492 TrxB Thioredoxin reduc 98.9 1.2E-08 2.7E-13 99.2 12.2 115 54-250 2-117 (305)
120 TIGR00136 gidA glucose-inhibit 98.9 1.3E-08 2.8E-13 106.4 12.9 158 56-254 1-160 (617)
121 TIGR00551 nadB L-aspartate oxi 98.9 2.1E-08 4.5E-13 105.4 14.5 65 170-253 127-194 (488)
122 PRK05945 sdhA succinate dehydr 98.9 3E-08 6.5E-13 106.2 14.6 62 171-250 135-199 (575)
123 PF00890 FAD_binding_2: FAD bi 98.9 1.5E-08 3.3E-13 104.7 11.9 63 169-249 139-204 (417)
124 PF00743 FMO-like: Flavin-bind 98.9 2E-08 4.3E-13 105.5 12.7 146 56-249 2-151 (531)
125 PRK06069 sdhA succinate dehydr 98.9 3.2E-08 6.8E-13 106.1 14.5 40 53-96 3-45 (577)
126 TIGR01812 sdhA_frdA_Gneg succi 98.8 2.7E-08 5.8E-13 106.7 13.3 64 171-252 129-195 (566)
127 TIGR03140 AhpF alkyl hydropero 98.8 2.2E-08 4.8E-13 105.9 12.3 114 53-248 210-323 (515)
128 KOG2853 Possible oxidoreductas 98.8 1.2E-07 2.7E-12 89.6 15.6 201 54-257 85-330 (509)
129 PLN02268 probable polyamine ox 98.8 1.1E-06 2.3E-11 91.4 24.1 66 57-126 2-74 (435)
130 PLN00128 Succinate dehydrogena 98.8 1.3E-08 2.8E-13 109.5 9.7 38 54-95 49-86 (635)
131 TIGR03143 AhpF_homolog putativ 98.8 4.8E-08 1E-12 104.1 13.8 114 54-250 3-116 (555)
132 PRK08401 L-aspartate oxidase; 98.8 1.2E-08 2.6E-13 106.5 8.9 60 171-252 120-179 (466)
133 PLN02576 protoporphyrinogen ox 98.8 2E-06 4.4E-11 90.9 26.0 41 54-97 11-51 (496)
134 PRK06175 L-aspartate oxidase; 98.8 2.8E-08 6E-13 102.6 11.4 37 54-95 3-39 (433)
135 PRK06854 adenylylsulfate reduc 98.8 5.9E-08 1.3E-12 104.3 14.2 39 54-94 10-48 (608)
136 COG1233 Phytoene dehydrogenase 98.8 4E-08 8.8E-13 103.0 12.6 56 171-246 224-279 (487)
137 PRK07057 sdhA succinate dehydr 98.8 7.7E-08 1.7E-12 103.2 14.9 39 53-95 10-48 (591)
138 PLN02487 zeta-carotene desatur 98.8 3.2E-06 6.9E-11 89.5 26.5 73 55-131 75-153 (569)
139 PLN02815 L-aspartate oxidase 98.8 1.1E-07 2.4E-12 101.4 15.5 40 51-95 25-64 (594)
140 PRK05335 tRNA (uracil-5-)-meth 98.8 4.7E-08 1E-12 98.2 11.8 122 56-198 3-125 (436)
141 PRK13977 myosin-cross-reactive 98.8 1.1E-07 2.4E-12 98.8 14.4 44 54-97 21-64 (576)
142 PRK08275 putative oxidoreducta 98.8 8.7E-08 1.9E-12 102.2 14.1 39 54-94 8-46 (554)
143 TIGR01424 gluta_reduc_2 glutat 98.8 6.5E-08 1.4E-12 100.6 12.9 33 55-91 2-34 (446)
144 PRK12839 hypothetical protein; 98.8 5.7E-08 1.2E-12 103.5 12.5 42 50-95 3-44 (572)
145 PLN02568 polyamine oxidase 98.8 2.2E-06 4.7E-11 90.7 24.0 46 52-97 2-48 (539)
146 PLN02676 polyamine oxidase 98.8 4.2E-06 9.1E-11 87.7 25.9 40 54-97 25-65 (487)
147 PRK06452 sdhA succinate dehydr 98.8 1E-07 2.3E-12 101.7 14.2 38 54-95 4-41 (566)
148 PRK07573 sdhA succinate dehydr 98.8 5.8E-08 1.3E-12 104.8 12.2 37 54-94 34-70 (640)
149 TIGR02732 zeta_caro_desat caro 98.7 4E-06 8.7E-11 87.7 25.5 71 57-131 1-77 (474)
150 PRK07803 sdhA succinate dehydr 98.7 2.1E-07 4.6E-12 100.4 16.3 38 54-95 7-44 (626)
151 PRK06467 dihydrolipoamide dehy 98.7 6.8E-08 1.5E-12 101.1 12.0 38 53-94 2-39 (471)
152 PRK05249 soluble pyridine nucl 98.7 8.4E-08 1.8E-12 100.4 12.8 38 53-94 3-40 (461)
153 PTZ00139 Succinate dehydrogena 98.7 4E-08 8.7E-13 105.7 10.4 38 54-95 28-65 (617)
154 PRK06263 sdhA succinate dehydr 98.7 2.2E-07 4.7E-12 99.1 15.6 63 171-250 134-199 (543)
155 PRK07843 3-ketosteroid-delta-1 98.7 3.5E-07 7.5E-12 97.6 17.0 39 52-94 4-42 (557)
156 PRK06416 dihydrolipoamide dehy 98.7 8.5E-08 1.8E-12 100.4 12.1 35 54-92 3-37 (462)
157 PRK08958 sdhA succinate dehydr 98.7 8.5E-08 1.8E-12 102.7 12.2 38 54-95 6-43 (588)
158 PRK09078 sdhA succinate dehydr 98.7 2.9E-08 6.2E-13 106.6 8.6 38 54-95 11-48 (598)
159 PRK12834 putative FAD-binding 98.7 5E-08 1.1E-12 104.0 10.3 35 54-92 3-37 (549)
160 PRK08071 L-aspartate oxidase; 98.7 2.9E-07 6.3E-12 97.1 15.6 36 55-95 3-38 (510)
161 PRK05976 dihydrolipoamide dehy 98.7 7.5E-08 1.6E-12 101.0 11.1 35 53-91 2-36 (472)
162 PRK08205 sdhA succinate dehydr 98.7 2.2E-07 4.8E-12 99.6 14.7 66 171-251 140-209 (583)
163 PF13454 NAD_binding_9: FAD-NA 98.7 1.1E-07 2.5E-12 83.7 10.1 35 59-93 1-36 (156)
164 PRK06116 glutathione reductase 98.7 1.5E-07 3.2E-12 98.2 12.6 34 54-91 3-36 (450)
165 PF06039 Mqo: Malate:quinone o 98.7 1.5E-07 3.2E-12 93.9 11.6 72 166-256 176-253 (488)
166 PRK06134 putative FAD-binding 98.7 4.5E-07 9.7E-12 97.3 16.2 39 52-94 9-47 (581)
167 PRK06370 mercuric reductase; V 98.7 7.4E-08 1.6E-12 100.8 10.0 37 52-92 2-38 (463)
168 PRK14694 putative mercuric red 98.7 2E-07 4.3E-12 97.6 12.9 37 52-92 3-39 (468)
169 PRK12842 putative succinate de 98.7 8.9E-08 1.9E-12 102.6 10.3 39 53-95 7-45 (574)
170 PRK08010 pyridine nucleotide-d 98.7 1.8E-07 4E-12 97.2 12.2 36 54-93 2-37 (441)
171 PRK07395 L-aspartate oxidase; 98.7 3.3E-07 7.2E-12 97.3 14.2 39 52-95 6-44 (553)
172 PRK09897 hypothetical protein; 98.6 1.2E-07 2.5E-12 99.5 10.2 38 56-95 2-39 (534)
173 PRK12845 3-ketosteroid-delta-1 98.6 5.5E-07 1.2E-11 95.8 15.6 40 51-95 12-51 (564)
174 PRK10262 thioredoxin reductase 98.6 2.9E-07 6.4E-12 91.5 12.5 114 53-248 4-117 (321)
175 PRK08641 sdhA succinate dehydr 98.6 2.8E-07 6.1E-12 98.8 13.1 38 54-95 2-39 (589)
176 PRK09077 L-aspartate oxidase; 98.6 1.7E-07 3.7E-12 99.5 11.3 38 53-95 6-43 (536)
177 PRK06115 dihydrolipoamide dehy 98.6 8.5E-08 1.8E-12 100.3 8.4 37 54-94 2-38 (466)
178 PRK08626 fumarate reductase fl 98.6 3E-07 6.4E-12 99.6 12.7 38 54-95 4-41 (657)
179 PRK07251 pyridine nucleotide-d 98.6 3.3E-07 7.3E-12 95.2 12.4 36 54-93 2-37 (438)
180 TIGR01350 lipoamide_DH dihydro 98.6 7.1E-07 1.5E-11 93.4 14.8 60 171-251 211-272 (461)
181 PLN02976 amine oxidase 98.6 1.7E-05 3.6E-10 89.6 25.6 68 393-463 1150-1218(1713)
182 PRK12835 3-ketosteroid-delta-1 98.6 4E-07 8.6E-12 97.5 12.7 40 52-95 8-47 (584)
183 PRK12844 3-ketosteroid-delta-1 98.6 1E-06 2.2E-11 93.9 15.8 39 53-95 4-42 (557)
184 PRK12837 3-ketosteroid-delta-1 98.6 3.4E-07 7.5E-12 96.8 12.1 39 52-95 4-42 (513)
185 PLN02507 glutathione reductase 98.6 1.8E-07 3.8E-12 98.5 9.6 34 53-90 23-56 (499)
186 TIGR01421 gluta_reduc_1 glutat 98.6 3.6E-07 7.8E-12 95.1 11.8 35 54-92 1-35 (450)
187 TIGR02485 CobZ_N-term precorri 98.6 6E-07 1.3E-11 93.1 13.2 65 171-253 123-188 (432)
188 PTZ00306 NADH-dependent fumara 98.6 3.2E-07 7E-12 105.6 12.1 39 53-95 407-445 (1167)
189 PRK07512 L-aspartate oxidase; 98.6 7.6E-07 1.6E-11 94.0 14.0 61 171-250 136-199 (513)
190 PTZ00363 rab-GDP dissociation 98.6 1.3E-06 2.8E-11 89.8 15.3 44 52-99 1-44 (443)
191 TIGR00137 gid_trmFO tRNA:m(5)U 98.6 5.3E-07 1.2E-11 91.3 12.1 123 56-198 1-123 (433)
192 COG1232 HemY Protoporphyrinoge 98.6 6.2E-07 1.4E-11 91.1 12.6 73 57-131 2-79 (444)
193 PRK06327 dihydrolipoamide dehy 98.6 6.4E-07 1.4E-11 94.0 13.0 33 54-90 3-35 (475)
194 KOG2844 Dimethylglycine dehydr 98.6 5.8E-06 1.3E-10 85.1 18.9 68 166-254 182-249 (856)
195 PRK07818 dihydrolipoamide dehy 98.5 1.6E-06 3.5E-11 90.8 15.6 35 54-92 3-37 (466)
196 COG1231 Monoamine oxidase [Ami 98.5 3.9E-07 8.4E-12 90.6 10.2 43 53-99 5-47 (450)
197 PF07992 Pyr_redox_2: Pyridine 98.5 9E-08 1.9E-12 88.2 5.4 33 57-93 1-33 (201)
198 TIGR01811 sdhA_Bsu succinate d 98.5 8.2E-07 1.8E-11 95.4 13.3 33 58-94 1-33 (603)
199 PF00070 Pyr_redox: Pyridine n 98.5 5.2E-07 1.1E-11 69.7 8.5 34 57-94 1-34 (80)
200 COG2509 Uncharacterized FAD-de 98.5 7E-06 1.5E-10 81.4 17.9 59 171-249 173-231 (486)
201 PRK13748 putative mercuric red 98.5 8.3E-07 1.8E-11 95.3 12.7 34 54-91 97-130 (561)
202 PRK12843 putative FAD-binding 98.5 3.7E-07 8E-12 97.8 9.4 41 51-95 12-52 (578)
203 KOG2852 Possible oxidoreductas 98.5 4.5E-07 9.8E-12 84.1 8.4 173 54-249 9-209 (380)
204 PTZ00058 glutathione reductase 98.5 2E-06 4.2E-11 91.3 14.4 38 51-92 44-81 (561)
205 COG0029 NadB Aspartate oxidase 98.5 2.5E-06 5.3E-11 85.6 13.6 162 57-253 9-201 (518)
206 PRK14727 putative mercuric red 98.5 1.4E-06 3E-11 91.6 12.4 39 52-94 13-51 (479)
207 PLN02546 glutathione reductase 98.5 4.9E-07 1.1E-11 95.8 9.0 34 53-90 77-110 (558)
208 PLN02328 lysine-specific histo 98.4 7.7E-05 1.7E-09 81.5 25.6 42 53-98 236-277 (808)
209 TIGR02053 MerA mercuric reduct 98.4 2.4E-06 5.2E-11 89.5 13.8 33 56-92 1-33 (463)
210 PRK06292 dihydrolipoamide dehy 98.4 1.7E-06 3.7E-11 90.5 12.5 34 54-91 2-35 (460)
211 PRK09564 coenzyme A disulfide 98.4 9.9E-07 2.1E-11 91.9 10.5 36 57-94 2-37 (444)
212 PRK12831 putative oxidoreducta 98.4 4.8E-07 1E-11 94.3 7.7 38 53-94 138-175 (464)
213 TIGR02061 aprA adenosine phosp 98.4 1.7E-06 3.7E-11 92.5 11.3 34 57-94 1-38 (614)
214 PF13450 NAD_binding_8: NAD(P) 98.4 3.6E-07 7.7E-12 67.9 4.3 32 60-95 1-32 (68)
215 COG2907 Predicted NAD/FAD-bind 98.4 5.6E-06 1.2E-10 79.1 13.2 70 54-129 7-87 (447)
216 PRK12779 putative bifunctional 98.4 8.6E-07 1.9E-11 99.3 8.8 37 54-94 305-341 (944)
217 TIGR01372 soxA sarcosine oxida 98.4 4E-06 8.8E-11 95.2 13.9 38 54-95 162-199 (985)
218 KOG2665 Predicted FAD-dependen 98.4 1.5E-06 3.3E-11 81.6 8.5 186 53-258 46-268 (453)
219 TIGR03378 glycerol3P_GlpB glyc 98.3 5.6E-06 1.2E-10 83.6 12.4 59 170-249 262-324 (419)
220 PTZ00052 thioredoxin reductase 98.3 1.2E-06 2.6E-11 92.3 7.5 33 55-91 5-37 (499)
221 PRK07845 flavoprotein disulfid 98.3 4.2E-06 9.2E-11 87.5 11.5 32 57-92 3-34 (466)
222 PRK13800 putative oxidoreducta 98.3 6.3E-06 1.4E-10 92.9 13.5 37 53-93 11-47 (897)
223 PRK13512 coenzyme A disulfide 98.3 3.5E-06 7.5E-11 87.5 10.4 36 57-94 3-38 (438)
224 PRK09754 phenylpropionate diox 98.3 2.7E-06 5.9E-11 87.1 9.5 38 55-94 3-40 (396)
225 PRK06912 acoL dihydrolipoamide 98.3 6.7E-06 1.5E-10 85.9 12.6 33 57-93 2-34 (458)
226 KOG3923 D-aspartate oxidase [A 98.3 2.1E-05 4.5E-10 73.7 13.9 44 54-97 2-48 (342)
227 PRK09853 putative selenate red 98.2 5.4E-06 1.2E-10 92.0 11.0 37 54-94 538-574 (1019)
228 PRK04965 NADH:flavorubredoxin 98.2 9E-06 2E-10 82.8 12.0 106 56-256 142-249 (377)
229 PF13434 K_oxygenase: L-lysine 98.2 2.1E-06 4.6E-11 85.5 7.1 155 55-254 2-165 (341)
230 PLN03000 amine oxidase 98.2 0.0002 4.4E-09 78.4 22.5 42 54-99 183-224 (881)
231 PF01593 Amino_oxidase: Flavin 98.2 5.5E-06 1.2E-10 85.6 9.9 55 176-251 214-268 (450)
232 COG1249 Lpd Pyruvate/2-oxoglut 98.2 4.5E-06 9.8E-11 85.7 9.0 38 53-94 2-39 (454)
233 COG1053 SdhA Succinate dehydro 98.2 1.4E-06 3E-11 91.9 4.7 40 52-95 3-42 (562)
234 COG4529 Uncharacterized protei 98.2 3.2E-06 7E-11 84.9 7.0 39 56-95 2-40 (474)
235 PTZ00153 lipoamide dehydrogena 98.2 2.9E-05 6.3E-10 83.7 14.7 34 54-91 115-148 (659)
236 PRK14989 nitrite reductase sub 98.2 7.4E-06 1.6E-10 91.0 10.3 39 56-94 4-42 (847)
237 PRK05249 soluble pyridine nucl 98.2 1.7E-05 3.6E-10 83.1 12.4 101 55-251 175-275 (461)
238 KOG0042 Glycerol-3-phosphate d 98.2 6.9E-06 1.5E-10 82.7 8.7 38 53-94 65-102 (680)
239 COG0445 GidA Flavin-dependent 98.2 3.2E-06 6.9E-11 85.6 6.3 154 54-249 3-159 (621)
240 TIGR03169 Nterm_to_SelD pyridi 98.1 9.5E-06 2.1E-10 82.2 9.8 37 57-94 1-37 (364)
241 TIGR01423 trypano_reduc trypan 98.1 7.8E-06 1.7E-10 85.6 9.3 35 54-91 2-36 (486)
242 KOG2960 Protein involved in th 98.1 7.2E-06 1.6E-10 72.8 7.5 148 56-250 77-236 (328)
243 PRK04965 NADH:flavorubredoxin 98.1 9.8E-06 2.1E-10 82.5 9.6 37 56-94 3-39 (377)
244 TIGR01316 gltA glutamate synth 98.1 7.2E-06 1.6E-10 85.3 8.5 38 53-94 131-168 (449)
245 COG3349 Uncharacterized conser 98.1 4.3E-06 9.4E-11 84.8 6.6 68 56-127 1-74 (485)
246 PTZ00318 NADH dehydrogenase-li 98.1 3E-05 6.5E-10 80.2 13.0 37 54-94 9-45 (424)
247 TIGR01438 TGR thioredoxin and 98.1 1.2E-05 2.7E-10 84.3 10.2 33 55-91 2-34 (484)
248 PRK12778 putative bifunctional 98.1 8E-06 1.7E-10 90.5 8.8 37 54-94 430-466 (752)
249 PRK06416 dihydrolipoamide dehy 98.1 2.3E-05 5.1E-10 82.0 11.8 99 56-250 173-274 (462)
250 TIGR02374 nitri_red_nirB nitri 98.1 7.9E-06 1.7E-10 90.6 8.5 36 58-94 1-36 (785)
251 PRK07846 mycothione reductase; 98.1 1.3E-05 2.8E-10 83.5 9.6 32 55-92 1-32 (451)
252 PRK06116 glutathione reductase 98.1 3.4E-05 7.3E-10 80.5 12.7 101 55-250 167-267 (450)
253 PRK09754 phenylpropionate diox 98.1 2.8E-05 6E-10 79.7 11.8 98 56-249 145-242 (396)
254 KOG2311 NAD/FAD-utilizing prot 98.1 7.2E-06 1.6E-10 81.3 7.0 158 53-247 26-185 (679)
255 KOG0029 Amine oxidase [Seconda 98.1 3.6E-06 7.8E-11 87.6 5.1 45 51-99 11-55 (501)
256 KOG2404 Fumarate reductase, fl 98.1 1.8E-05 3.9E-10 74.8 9.0 35 57-95 11-45 (477)
257 PRK06567 putative bifunctional 98.1 8E-06 1.7E-10 89.6 7.5 38 53-94 381-418 (1028)
258 PRK12775 putative trifunctiona 98.0 8.9E-06 1.9E-10 92.1 7.8 37 54-94 429-465 (1006)
259 PRK11749 dihydropyrimidine deh 98.0 1.1E-05 2.4E-10 84.2 7.8 38 53-94 138-175 (457)
260 PLN02507 glutathione reductase 98.0 5.2E-05 1.1E-09 79.9 12.3 99 56-250 204-302 (499)
261 TIGR03452 mycothione_red mycot 98.0 1.1E-05 2.4E-10 84.0 7.2 32 55-92 2-33 (452)
262 PRK06912 acoL dihydrolipoamide 98.0 6.1E-05 1.3E-09 78.7 12.5 99 56-250 171-270 (458)
263 KOG0685 Flavin-containing amin 98.0 3.9E-05 8.5E-10 76.6 10.3 41 55-98 21-61 (498)
264 TIGR01424 gluta_reduc_2 glutat 98.0 6E-05 1.3E-09 78.5 12.3 99 56-250 167-265 (446)
265 PRK07208 hypothetical protein; 98.0 6.7E-06 1.5E-10 86.6 5.2 41 53-97 2-42 (479)
266 PRK07251 pyridine nucleotide-d 98.0 5.7E-05 1.2E-09 78.6 12.0 99 55-250 157-255 (438)
267 KOG0404 Thioredoxin reductase 98.0 6.3E-05 1.4E-09 67.5 10.2 119 54-249 7-125 (322)
268 PRK07845 flavoprotein disulfid 98.0 7.9E-05 1.7E-09 78.0 12.5 99 56-250 178-276 (466)
269 TIGR01421 gluta_reduc_1 glutat 98.0 6.9E-05 1.5E-09 78.1 12.0 100 56-250 167-267 (450)
270 TIGR01318 gltD_gamma_fam gluta 98.0 2.3E-05 4.9E-10 82.0 8.4 37 54-94 140-176 (467)
271 KOG1335 Dihydrolipoamide dehyd 97.9 4.8E-05 1E-09 73.7 9.6 38 54-95 38-75 (506)
272 COG3634 AhpF Alkyl hydroperoxi 97.9 1.3E-05 2.8E-10 76.5 5.4 114 54-247 210-324 (520)
273 COG1249 Lpd Pyruvate/2-oxoglut 97.9 9.9E-05 2.2E-09 75.9 12.3 101 54-250 172-274 (454)
274 TIGR02352 thiamin_ThiO glycine 97.9 0.00038 8.3E-09 69.5 16.4 63 166-250 132-195 (337)
275 TIGR02374 nitri_red_nirB nitri 97.9 6.2E-05 1.3E-09 83.6 11.4 99 56-249 141-239 (785)
276 PRK07846 mycothione reductase; 97.9 0.0001 2.2E-09 76.8 12.4 99 55-250 166-264 (451)
277 COG3573 Predicted oxidoreducta 97.9 4.4E-05 9.6E-10 72.5 8.5 37 54-94 4-40 (552)
278 PRK06327 dihydrolipoamide dehy 97.9 8.8E-05 1.9E-09 77.9 11.7 99 56-250 184-286 (475)
279 PRK13512 coenzyme A disulfide 97.9 8.9E-05 1.9E-09 77.0 11.4 94 56-249 149-242 (438)
280 PRK05976 dihydrolipoamide dehy 97.9 0.0001 2.2E-09 77.4 12.0 102 55-250 180-283 (472)
281 PRK06370 mercuric reductase; V 97.9 0.00011 2.5E-09 76.9 12.2 100 55-250 171-273 (463)
282 PLN02852 ferredoxin-NADP+ redu 97.9 2E-05 4.4E-10 81.8 6.2 40 53-94 24-63 (491)
283 PRK14989 nitrite reductase sub 97.9 9.1E-05 2E-09 82.5 11.7 102 56-250 146-247 (847)
284 PRK06115 dihydrolipoamide dehy 97.8 0.00013 2.9E-09 76.3 11.7 100 55-250 174-278 (466)
285 COG1252 Ndh NADH dehydrogenase 97.8 9.7E-05 2.1E-09 74.2 10.0 38 55-94 3-40 (405)
286 PRK12809 putative oxidoreducta 97.8 3.7E-05 8E-10 83.6 7.6 37 54-94 309-345 (639)
287 PF06100 Strep_67kDa_ant: Stre 97.8 0.00055 1.2E-08 69.6 15.0 41 56-96 3-43 (500)
288 PRK08010 pyridine nucleotide-d 97.8 0.00019 4E-09 74.8 12.3 98 56-250 159-256 (441)
289 TIGR03385 CoA_CoA_reduc CoA-di 97.8 0.00019 4E-09 74.5 12.0 97 56-249 138-234 (427)
290 TIGR01317 GOGAT_sm_gam glutama 97.8 5.6E-05 1.2E-09 79.4 7.7 37 54-94 142-178 (485)
291 TIGR02733 desat_CrtD C-3',4' d 97.8 2.6E-05 5.6E-10 82.4 4.9 37 56-96 2-38 (492)
292 KOG1276 Protoporphyrinogen oxi 97.8 9.1E-05 2E-09 73.0 8.1 77 54-132 10-95 (491)
293 TIGR03452 mycothione_red mycot 97.7 0.00031 6.8E-09 73.2 12.7 98 56-250 170-267 (452)
294 TIGR01423 trypano_reduc trypan 97.7 0.00033 7.1E-09 73.5 12.8 104 55-250 187-290 (486)
295 PTZ00052 thioredoxin reductase 97.7 0.00028 6E-09 74.5 12.3 98 56-250 183-280 (499)
296 TIGR03315 Se_ygfK putative sel 97.7 3.6E-05 7.8E-10 85.9 5.6 37 54-94 536-572 (1012)
297 PRK14694 putative mercuric red 97.7 0.00034 7.3E-09 73.4 12.5 97 56-250 179-275 (468)
298 TIGR00031 UDP-GALP_mutase UDP- 97.7 3.7E-05 7.9E-10 77.3 5.0 37 56-96 2-38 (377)
299 PTZ00318 NADH dehydrogenase-li 97.7 0.0003 6.4E-09 72.8 11.6 51 173-248 230-280 (424)
300 COG0446 HcaD Uncharacterized N 97.7 0.00034 7.3E-09 71.9 11.7 100 55-249 136-238 (415)
301 COG3075 GlpB Anaerobic glycero 97.7 4.3E-05 9.4E-10 72.6 4.5 36 55-94 2-37 (421)
302 COG1252 Ndh NADH dehydrogenase 97.7 0.00018 3.9E-09 72.3 9.1 58 171-253 209-268 (405)
303 PRK09564 coenzyme A disulfide 97.7 0.00036 7.7E-09 72.8 11.9 98 56-249 150-247 (444)
304 PRK14727 putative mercuric red 97.7 0.00048 1E-08 72.4 12.5 97 56-250 189-285 (479)
305 COG3486 IucD Lysine/ornithine 97.6 0.00027 5.9E-09 69.5 9.5 157 52-254 2-163 (436)
306 PTZ00058 glutathione reductase 97.6 0.00043 9.4E-09 73.6 11.9 101 55-250 237-338 (561)
307 TIGR03197 MnmC_Cterm tRNA U-34 97.6 0.00014 3.1E-09 74.1 7.8 62 166-249 130-191 (381)
308 PF00732 GMC_oxred_N: GMC oxid 97.6 5.5E-05 1.2E-09 74.3 4.6 37 56-95 1-37 (296)
309 PTZ00188 adrenodoxin reductase 97.6 6.9E-05 1.5E-09 76.9 5.3 38 54-94 38-75 (506)
310 PRK06467 dihydrolipoamide dehy 97.6 0.00047 1E-08 72.3 11.7 35 56-94 175-209 (471)
311 TIGR01438 TGR thioredoxin and 97.6 0.0005 1.1E-08 72.2 11.8 98 56-250 181-281 (484)
312 COG1148 HdrA Heterodisulfide r 97.6 6.4E-05 1.4E-09 75.0 4.6 37 55-95 124-160 (622)
313 PRK13748 putative mercuric red 97.6 0.00072 1.6E-08 72.7 12.6 97 56-250 271-367 (561)
314 PLN02546 glutathione reductase 97.5 0.00079 1.7E-08 71.7 12.3 101 55-250 252-352 (558)
315 PRK12769 putative oxidoreducta 97.5 0.00013 2.8E-09 79.6 5.6 37 54-94 326-362 (654)
316 TIGR02462 pyranose_ox pyranose 97.5 0.00017 3.8E-09 75.7 6.2 36 56-95 1-36 (544)
317 PRK02106 choline dehydrogenase 97.5 0.00012 2.6E-09 78.5 5.2 39 52-93 2-40 (560)
318 PRK12810 gltD glutamate syntha 97.5 0.00015 3.2E-09 76.0 5.5 38 53-94 141-178 (471)
319 PLN02529 lysine-specific histo 97.4 0.00015 3.2E-09 78.9 5.4 41 53-97 158-198 (738)
320 TIGR03862 flavo_PP4765 unchara 97.4 0.0004 8.6E-09 69.7 8.1 59 167-248 82-141 (376)
321 PRK06292 dihydrolipoamide dehy 97.4 0.0013 2.7E-08 69.0 12.3 36 55-94 169-204 (460)
322 TIGR03377 glycerol3P_GlpA glyc 97.4 0.0026 5.7E-08 67.6 14.7 70 166-256 123-199 (516)
323 PRK05329 anaerobic glycerol-3- 97.4 0.00017 3.6E-09 73.8 4.6 34 55-92 2-35 (422)
324 PTZ00153 lipoamide dehydrogena 97.3 0.0022 4.7E-08 69.4 12.3 35 56-94 313-347 (659)
325 COG0562 Glf UDP-galactopyranos 97.3 0.00029 6.3E-09 67.0 4.7 36 56-95 2-37 (374)
326 PRK12814 putative NADPH-depend 97.2 0.00036 7.7E-09 76.1 5.5 37 54-94 192-228 (652)
327 KOG4254 Phytoene desaturase [C 97.2 0.0019 4.2E-08 64.2 9.7 64 171-254 264-327 (561)
328 PRK10262 thioredoxin reductase 97.2 0.0028 6.1E-08 62.9 11.2 34 55-92 146-179 (321)
329 TIGR03140 AhpF alkyl hydropero 97.1 0.0031 6.8E-08 66.9 11.2 34 55-92 352-385 (515)
330 PF13434 K_oxygenase: L-lysine 97.1 0.0014 3E-08 65.4 7.9 144 52-246 187-339 (341)
331 KOG1800 Ferredoxin/adrenodoxin 97.1 0.00056 1.2E-08 66.5 4.7 37 56-94 21-57 (468)
332 TIGR01292 TRX_reduct thioredox 97.1 0.0045 9.7E-08 60.6 11.1 34 55-92 141-174 (300)
333 COG2303 BetA Choline dehydroge 97.1 0.00058 1.3E-08 72.6 5.0 38 52-93 4-41 (542)
334 PRK12770 putative glutamate sy 97.1 0.0007 1.5E-08 68.2 5.3 37 54-94 17-53 (352)
335 COG0493 GltD NADPH-dependent g 97.0 0.00055 1.2E-08 70.6 4.2 37 55-95 123-159 (457)
336 PLN02785 Protein HOTHEAD 97.0 0.00076 1.6E-08 72.3 5.4 37 53-94 53-89 (587)
337 TIGR03169 Nterm_to_SelD pyridi 97.0 0.0052 1.1E-07 62.2 11.3 49 175-248 195-243 (364)
338 COG1206 Gid NAD(FAD)-utilizing 97.0 0.0019 4.2E-08 61.7 7.1 120 55-198 3-126 (439)
339 PRK12771 putative glutamate sy 97.0 0.00093 2E-08 71.8 5.7 37 54-94 136-172 (564)
340 KOG1336 Monodehydroascorbate/f 97.0 0.0076 1.6E-07 60.8 11.3 103 55-250 213-315 (478)
341 COG1251 NirB NAD(P)H-nitrite r 97.0 0.0017 3.6E-08 68.7 6.8 97 57-248 147-243 (793)
342 TIGR01810 betA choline dehydro 96.8 0.0011 2.3E-08 70.8 4.4 34 57-93 1-34 (532)
343 PRK15317 alkyl hydroperoxide r 96.8 0.0069 1.5E-07 64.4 10.4 34 56-93 352-385 (517)
344 PRK13984 putative oxidoreducta 96.8 0.0016 3.4E-08 70.7 5.5 38 53-94 281-318 (604)
345 KOG4716 Thioredoxin reductase 96.8 0.031 6.6E-07 53.9 13.1 35 54-92 18-52 (503)
346 KOG0399 Glutamate synthase [Am 96.7 0.002 4.2E-08 70.5 4.9 42 50-95 1780-1821(2142)
347 TIGR01316 gltA glutamate synth 96.7 0.014 3.1E-07 60.7 11.2 33 56-92 273-305 (449)
348 PRK12770 putative glutamate sy 96.6 0.013 2.8E-07 59.0 10.4 33 56-92 173-206 (352)
349 KOG1336 Monodehydroascorbate/f 96.6 0.0075 1.6E-07 60.8 7.8 45 182-250 138-182 (478)
350 KOG1238 Glucose dehydrogenase/ 96.5 0.0032 6.8E-08 66.0 4.9 40 52-94 54-93 (623)
351 PRK11749 dihydropyrimidine deh 96.4 0.024 5.2E-07 59.3 11.3 34 55-92 273-307 (457)
352 KOG2495 NADH-dehydrogenase (ub 96.4 0.015 3.3E-07 57.8 8.3 60 172-254 274-337 (491)
353 PRK12831 putative oxidoreducta 96.2 0.023 5E-07 59.4 9.7 34 55-92 281-314 (464)
354 KOG0405 Pyridine nucleotide-di 96.1 0.32 6.9E-06 47.3 15.4 38 53-94 18-55 (478)
355 PRK12810 gltD glutamate syntha 95.9 0.048 1E-06 57.2 10.3 34 55-92 281-315 (471)
356 PRK05675 sdhA succinate dehydr 95.8 0.05 1.1E-06 58.4 10.3 64 170-250 125-191 (570)
357 KOG3851 Sulfide:quinone oxidor 95.7 0.015 3.2E-07 55.6 4.7 40 52-93 36-75 (446)
358 KOG1346 Programmed cell death 95.6 0.036 7.7E-07 54.8 7.3 62 173-255 395-458 (659)
359 TIGR03143 AhpF_homolog putativ 95.6 0.086 1.9E-06 56.5 11.0 34 55-92 143-176 (555)
360 KOG1335 Dihydrolipoamide dehyd 95.5 0.065 1.4E-06 52.6 8.4 35 56-94 212-246 (506)
361 PRK12778 putative bifunctional 95.4 0.065 1.4E-06 59.7 9.6 33 56-92 571-604 (752)
362 TIGR03467 HpnE squalene-associ 95.4 0.76 1.6E-05 47.2 17.0 53 174-247 200-253 (419)
363 PF01210 NAD_Gly3P_dh_N: NAD-d 95.4 0.022 4.7E-07 50.1 4.5 32 57-92 1-32 (157)
364 TIGR02733 desat_CrtD C-3',4' d 95.3 1.3 2.7E-05 46.9 18.3 59 170-248 231-294 (492)
365 KOG1346 Programmed cell death 95.2 0.1 2.2E-06 51.7 8.8 137 53-249 176-312 (659)
366 COG0569 TrkA K+ transport syst 95.1 0.021 4.5E-07 53.4 3.9 65 56-127 1-65 (225)
367 PRK12769 putative oxidoreducta 94.9 0.23 4.9E-06 54.5 11.7 34 56-93 469-503 (654)
368 TIGR01318 gltD_gamma_fam gluta 94.9 0.23 4.9E-06 52.1 11.3 35 55-93 282-317 (467)
369 PF02737 3HCDH_N: 3-hydroxyacy 94.7 0.033 7.1E-07 50.2 3.8 33 57-93 1-33 (180)
370 PRK12814 putative NADPH-depend 94.5 0.16 3.6E-06 55.5 9.4 34 55-92 323-357 (652)
371 PF00996 GDI: GDP dissociation 94.5 0.044 9.5E-07 56.2 4.6 41 52-96 1-41 (438)
372 PF03721 UDPG_MGDP_dh_N: UDP-g 94.4 0.039 8.4E-07 49.9 3.6 34 56-93 1-34 (185)
373 COG0446 HcaD Uncharacterized N 94.4 0.12 2.7E-06 52.8 7.8 35 58-94 1-35 (415)
374 PRK09853 putative selenate red 94.2 0.3 6.4E-06 55.3 10.6 35 55-92 668-703 (1019)
375 PRK02705 murD UDP-N-acetylmura 94.2 0.051 1.1E-06 56.9 4.5 34 57-94 2-35 (459)
376 PRK12779 putative bifunctional 94.1 0.32 6.8E-06 55.4 10.7 34 55-92 447-480 (944)
377 PRK01438 murD UDP-N-acetylmura 94.0 0.06 1.3E-06 56.7 4.5 33 56-92 17-49 (480)
378 PLN02172 flavin-containing mon 93.8 0.11 2.4E-06 54.2 6.0 34 55-92 204-237 (461)
379 PF13241 NAD_binding_7: Putati 93.7 0.099 2.2E-06 42.2 4.3 34 54-91 6-39 (103)
380 PRK06249 2-dehydropantoate 2-r 93.7 0.094 2E-06 51.8 5.0 35 54-92 4-38 (313)
381 PF00743 FMO-like: Flavin-bind 93.4 0.24 5.2E-06 52.6 7.7 35 55-93 183-217 (531)
382 TIGR01350 lipoamide_DH dihydro 93.4 0.085 1.8E-06 55.3 4.4 36 55-94 170-205 (461)
383 TIGR02053 MerA mercuric reduct 93.3 0.13 2.8E-06 53.9 5.6 35 56-94 167-201 (463)
384 PRK06129 3-hydroxyacyl-CoA deh 93.3 0.088 1.9E-06 51.9 4.0 33 57-93 4-36 (308)
385 PF02558 ApbA: Ketopantoate re 93.1 0.13 2.8E-06 44.7 4.3 31 58-92 1-31 (151)
386 COG4716 Myosin-crossreactive a 93.0 0.097 2.1E-06 51.2 3.6 43 53-95 20-62 (587)
387 PF01262 AlaDh_PNT_C: Alanine 93.0 0.14 3.1E-06 45.5 4.5 35 54-92 19-53 (168)
388 PRK07818 dihydrolipoamide dehy 92.8 0.18 3.9E-06 52.9 5.7 35 56-94 173-207 (466)
389 COG1251 NirB NAD(P)H-nitrite r 92.8 0.82 1.8E-05 49.1 10.3 46 182-250 70-115 (793)
390 PRK05708 2-dehydropantoate 2-r 92.7 0.13 2.9E-06 50.5 4.3 34 55-92 2-35 (305)
391 TIGR01470 cysG_Nterm siroheme 92.6 0.17 3.6E-06 46.6 4.6 33 56-92 10-42 (205)
392 PRK06719 precorrin-2 dehydroge 92.6 0.2 4.3E-06 44.0 4.9 31 55-89 13-43 (157)
393 PRK07530 3-hydroxybutyryl-CoA 92.6 0.15 3.3E-06 49.8 4.5 34 56-93 5-38 (292)
394 TIGR03315 Se_ygfK putative sel 92.5 1.1 2.4E-05 51.0 11.6 35 55-92 666-701 (1012)
395 PRK07819 3-hydroxybutyryl-CoA 92.4 0.17 3.7E-06 49.2 4.6 34 57-94 7-40 (286)
396 PF13478 XdhC_C: XdhC Rossmann 92.2 0.16 3.5E-06 43.3 3.7 32 58-93 1-32 (136)
397 PRK08293 3-hydroxybutyryl-CoA 92.2 0.17 3.6E-06 49.4 4.2 34 56-93 4-37 (287)
398 PRK07066 3-hydroxybutyryl-CoA 92.1 0.23 5E-06 49.0 5.1 35 56-94 8-42 (321)
399 PRK14106 murD UDP-N-acetylmura 92.1 0.21 4.6E-06 52.0 5.2 34 55-92 5-38 (450)
400 PRK09260 3-hydroxybutyryl-CoA 91.8 0.17 3.6E-06 49.4 3.8 33 57-93 3-35 (288)
401 PRK09424 pntA NAD(P) transhydr 91.8 0.17 3.7E-06 53.0 4.0 36 54-93 164-199 (509)
402 KOG2755 Oxidoreductase [Genera 91.8 0.12 2.7E-06 48.1 2.6 35 58-94 2-36 (334)
403 TIGR00518 alaDH alanine dehydr 91.8 0.2 4.4E-06 50.6 4.4 35 54-92 166-200 (370)
404 PF00056 Ldh_1_N: lactate/mala 91.7 0.29 6.4E-06 42.0 4.8 35 56-92 1-36 (141)
405 PF13738 Pyr_redox_3: Pyridine 91.7 0.26 5.5E-06 45.0 4.7 34 55-92 167-200 (203)
406 PRK12921 2-dehydropantoate 2-r 91.6 0.19 4.2E-06 49.3 4.0 30 57-90 2-31 (305)
407 PRK06522 2-dehydropantoate 2-r 91.6 0.22 4.7E-06 48.9 4.3 32 57-92 2-33 (304)
408 PRK06718 precorrin-2 dehydroge 91.5 0.3 6.4E-06 44.8 4.8 33 55-91 10-42 (202)
409 COG1004 Ugd Predicted UDP-gluc 91.5 0.21 4.5E-06 49.7 3.9 34 56-93 1-34 (414)
410 cd05292 LDH_2 A subgroup of L- 91.4 0.25 5.5E-06 48.6 4.5 34 56-93 1-36 (308)
411 PRK12775 putative trifunctiona 91.4 1.3 2.8E-05 51.0 10.7 34 55-92 571-605 (1006)
412 cd00401 AdoHcyase S-adenosyl-L 91.3 0.25 5.3E-06 50.4 4.4 35 55-93 202-236 (413)
413 PRK06035 3-hydroxyacyl-CoA deh 91.2 0.23 5E-06 48.5 4.0 34 56-93 4-37 (291)
414 COG0492 TrxB Thioredoxin reduc 91.1 2.2 4.7E-05 41.9 10.6 35 56-94 144-178 (305)
415 PLN02852 ferredoxin-NADP+ redu 90.9 2.5 5.4E-05 44.4 11.5 23 55-77 166-188 (491)
416 PRK14618 NAD(P)H-dependent gly 90.9 0.3 6.5E-06 48.6 4.6 34 55-92 4-37 (328)
417 PRK12809 putative oxidoreducta 90.6 2.1 4.5E-05 46.9 11.2 35 55-93 451-486 (639)
418 PRK05808 3-hydroxybutyryl-CoA 90.5 0.26 5.6E-06 47.9 3.7 33 57-93 5-37 (282)
419 PRK06567 putative bifunctional 90.5 0.8 1.7E-05 51.4 7.8 35 56-92 551-586 (1028)
420 PF02254 TrkA_N: TrkA-N domain 90.5 0.32 7E-06 40.0 3.7 32 58-93 1-32 (116)
421 TIGR02354 thiF_fam2 thiamine b 90.5 0.39 8.4E-06 44.0 4.6 35 54-92 20-55 (200)
422 PRK11064 wecC UDP-N-acetyl-D-m 90.4 0.32 7E-06 50.0 4.4 34 56-93 4-37 (415)
423 PRK13984 putative oxidoreducta 90.3 1.6 3.5E-05 47.5 9.9 35 393-433 568-602 (604)
424 PLN02353 probable UDP-glucose 90.0 0.38 8.3E-06 50.2 4.6 36 56-93 2-37 (473)
425 TIGR02964 xanthine_xdhC xanthi 89.9 0.53 1.1E-05 44.6 5.1 36 54-93 99-134 (246)
426 PRK08229 2-dehydropantoate 2-r 89.9 0.38 8.1E-06 48.2 4.4 33 56-92 3-35 (341)
427 PRK14619 NAD(P)H-dependent gly 89.8 0.48 1E-05 46.7 5.0 35 55-93 4-38 (308)
428 PRK14620 NAD(P)H-dependent gly 89.7 0.41 8.9E-06 47.6 4.4 32 57-92 2-33 (326)
429 TIGR01763 MalateDH_bact malate 89.7 0.48 1E-05 46.5 4.8 34 56-93 2-36 (305)
430 COG3486 IucD Lysine/ornithine 89.6 2.7 5.8E-05 42.2 9.7 147 57-254 189-346 (436)
431 PRK06130 3-hydroxybutyryl-CoA 89.6 0.47 1E-05 46.8 4.7 33 56-92 5-37 (311)
432 TIGR03026 NDP-sugDHase nucleot 89.5 0.34 7.4E-06 49.8 3.8 33 57-93 2-34 (411)
433 PF00899 ThiF: ThiF family; I 89.3 0.37 8E-06 41.0 3.3 35 55-93 2-37 (135)
434 COG0686 Ald Alanine dehydrogen 89.3 0.38 8.3E-06 46.1 3.5 36 53-92 166-201 (371)
435 PLN02545 3-hydroxybutyryl-CoA 89.2 0.5 1.1E-05 46.2 4.6 34 56-93 5-38 (295)
436 PF01488 Shikimate_DH: Shikima 89.0 0.6 1.3E-05 39.8 4.3 35 54-92 11-46 (135)
437 TIGR00936 ahcY adenosylhomocys 89.0 0.52 1.1E-05 47.9 4.5 36 54-93 194-229 (406)
438 cd01080 NAD_bind_m-THF_DH_Cycl 88.9 0.69 1.5E-05 41.0 4.8 36 53-92 42-78 (168)
439 TIGR03385 CoA_CoA_reduc CoA-di 88.9 1.6 3.4E-05 45.2 8.2 37 393-429 261-302 (427)
440 KOG2495 NADH-dehydrogenase (ub 88.9 5.7 0.00012 40.2 11.4 41 50-94 50-90 (491)
441 PRK04148 hypothetical protein; 88.7 0.4 8.7E-06 40.5 3.0 33 56-93 18-50 (134)
442 PRK15057 UDP-glucose 6-dehydro 88.6 0.44 9.6E-06 48.5 3.8 33 57-94 2-34 (388)
443 PRK12475 thiamine/molybdopteri 88.6 0.6 1.3E-05 46.5 4.6 35 55-93 24-59 (338)
444 PRK15116 sulfur acceptor prote 88.4 0.67 1.5E-05 44.4 4.7 38 54-94 29-66 (268)
445 PRK07417 arogenate dehydrogena 88.3 0.49 1.1E-05 45.9 3.7 32 57-92 2-33 (279)
446 TIGR00561 pntA NAD(P) transhyd 88.3 0.57 1.2E-05 49.0 4.3 34 55-92 164-197 (511)
447 PRK00094 gpsA NAD(P)H-dependen 88.2 0.55 1.2E-05 46.5 4.2 32 57-92 3-34 (325)
448 COG3634 AhpF Alkyl hydroperoxi 88.0 0.5 1.1E-05 46.0 3.4 37 54-94 353-389 (520)
449 PTZ00082 L-lactate dehydrogena 87.9 0.87 1.9E-05 45.0 5.3 37 54-94 5-42 (321)
450 PRK07531 bifunctional 3-hydrox 87.9 0.66 1.4E-05 48.9 4.7 35 56-94 5-39 (495)
451 PLN02256 arogenate dehydrogena 87.7 0.92 2E-05 44.5 5.3 37 52-92 33-69 (304)
452 PRK08306 dipicolinate synthase 87.7 0.72 1.6E-05 45.1 4.5 35 54-92 151-185 (296)
453 PRK06223 malate dehydrogenase; 87.5 0.79 1.7E-05 45.1 4.7 34 56-93 3-37 (307)
454 TIGR02356 adenyl_thiF thiazole 87.5 0.85 1.9E-05 41.8 4.6 36 54-93 20-56 (202)
455 PRK00066 ldh L-lactate dehydro 87.4 1 2.2E-05 44.4 5.4 36 54-93 5-42 (315)
456 PRK07688 thiamine/molybdopteri 87.2 0.83 1.8E-05 45.6 4.6 36 54-93 23-59 (339)
457 PF00670 AdoHcyase_NAD: S-aden 87.1 0.71 1.5E-05 40.3 3.6 34 55-92 23-56 (162)
458 PRK05476 S-adenosyl-L-homocyst 86.9 0.82 1.8E-05 46.8 4.5 36 54-93 211-246 (425)
459 cd05291 HicDH_like L-2-hydroxy 86.9 0.87 1.9E-05 44.8 4.6 34 57-94 2-37 (306)
460 KOG4405 GDP dissociation inhib 86.9 0.91 2E-05 45.2 4.5 42 52-97 5-46 (547)
461 PRK12549 shikimate 5-dehydroge 86.8 0.85 1.8E-05 44.3 4.4 34 55-92 127-161 (284)
462 COG1063 Tdh Threonine dehydrog 86.7 0.78 1.7E-05 46.1 4.2 33 57-93 171-204 (350)
463 PRK12771 putative glutamate sy 86.6 6 0.00013 42.6 11.2 34 55-92 267-301 (564)
464 TIGR01915 npdG NADPH-dependent 86.5 0.92 2E-05 42.2 4.3 32 57-92 2-34 (219)
465 cd05293 LDH_1 A subgroup of L- 86.5 1.2 2.6E-05 43.8 5.3 37 55-93 3-39 (312)
466 PF10727 Rossmann-like: Rossma 86.3 0.49 1.1E-05 39.7 2.1 35 54-92 9-43 (127)
467 COG5044 MRS6 RAB proteins gera 86.3 1.2 2.6E-05 43.9 5.0 38 55-96 6-43 (434)
468 PRK03369 murD UDP-N-acetylmura 86.1 0.84 1.8E-05 48.2 4.3 33 56-92 13-45 (488)
469 PRK05329 anaerobic glycerol-3- 86.0 2.7 5.8E-05 43.3 7.7 57 170-247 258-317 (422)
470 TIGR02279 PaaC-3OHAcCoADH 3-hy 85.9 0.81 1.8E-05 48.3 4.0 35 56-94 6-40 (503)
471 PRK01710 murD UDP-N-acetylmura 85.9 0.93 2E-05 47.4 4.5 34 56-93 15-48 (458)
472 KOG2304 3-hydroxyacyl-CoA dehy 85.7 0.83 1.8E-05 41.7 3.3 37 54-94 10-46 (298)
473 PF03446 NAD_binding_2: NAD bi 85.6 1.2 2.5E-05 39.3 4.3 34 56-93 2-35 (163)
474 cd01483 E1_enzyme_family Super 85.5 1.3 2.8E-05 38.0 4.5 34 57-94 1-35 (143)
475 PRK07502 cyclohexadienyl dehyd 85.4 1 2.3E-05 44.3 4.4 33 56-92 7-41 (307)
476 TIGR02355 moeB molybdopterin s 85.4 1.2 2.6E-05 42.0 4.6 38 54-94 23-60 (240)
477 cd01487 E1_ThiF_like E1_ThiF_l 85.2 1.1 2.4E-05 39.9 4.0 33 57-93 1-34 (174)
478 PTZ00117 malate dehydrogenase; 85.0 1.4 2.9E-05 43.7 4.9 37 54-94 4-41 (319)
479 PLN02529 lysine-specific histo 84.9 43 0.00094 37.2 16.7 38 393-433 562-599 (738)
480 TIGR02853 spore_dpaA dipicolin 84.8 1.2 2.6E-05 43.3 4.4 35 54-92 150-184 (287)
481 PRK02472 murD UDP-N-acetylmura 84.8 1.3 2.8E-05 46.1 5.0 34 56-93 6-39 (447)
482 PLN02494 adenosylhomocysteinas 84.7 1.2 2.7E-05 45.9 4.5 36 54-93 253-288 (477)
483 PRK08644 thiamine biosynthesis 84.7 1.3 2.7E-05 41.0 4.3 36 54-93 27-63 (212)
484 TIGR03736 PRTRC_ThiF PRTRC sys 84.7 1.4 3.1E-05 41.5 4.6 40 54-93 10-56 (244)
485 cd05311 NAD_bind_2_malic_enz N 84.6 1.2 2.6E-05 41.7 4.1 34 55-92 25-61 (226)
486 PRK04308 murD UDP-N-acetylmura 84.6 1.5 3.3E-05 45.6 5.4 35 56-94 6-40 (445)
487 PRK05562 precorrin-2 dehydroge 84.6 1.5 3.2E-05 40.7 4.6 33 55-91 25-57 (223)
488 PRK05690 molybdopterin biosynt 84.6 1.4 3.1E-05 41.7 4.6 36 54-93 31-67 (245)
489 cd01339 LDH-like_MDH L-lactate 84.6 1.1 2.5E-05 43.8 4.1 32 58-93 1-33 (300)
490 PRK11730 fadB multifunctional 84.4 0.96 2.1E-05 50.0 3.9 35 56-94 314-348 (715)
491 PRK09496 trkA potassium transp 84.3 1 2.2E-05 46.9 4.0 33 57-93 2-34 (453)
492 PRK08268 3-hydroxy-acyl-CoA de 84.2 1.4 3E-05 46.6 4.9 35 56-94 8-42 (507)
493 TIGR01505 tartro_sem_red 2-hyd 83.8 1.1 2.4E-05 43.6 3.7 33 57-93 1-33 (291)
494 cd01078 NAD_bind_H4MPT_DH NADP 83.7 1.8 3.9E-05 39.3 4.8 34 55-92 28-62 (194)
495 COG1893 ApbA Ketopantoate redu 83.5 1.2 2.7E-05 43.7 3.8 33 56-92 1-33 (307)
496 TIGR02437 FadB fatty oxidation 83.5 1.1 2.4E-05 49.5 3.9 35 56-94 314-348 (714)
497 PLN02572 UDP-sulfoquinovose sy 83.5 2 4.4E-05 44.7 5.6 35 53-91 45-80 (442)
498 PRK08328 hypothetical protein; 83.4 1.7 3.6E-05 40.8 4.6 35 55-92 27-61 (231)
499 cd01075 NAD_bind_Leu_Phe_Val_D 83.4 2.2 4.8E-05 39.0 5.3 34 55-92 28-61 (200)
500 cd05191 NAD_bind_amino_acid_DH 83.3 2.8 6.1E-05 32.3 5.1 33 55-90 23-55 (86)
No 1
>PRK08013 oxidoreductase; Provisional
Probab=100.00 E-value=5e-52 Score=424.95 Aligned_cols=395 Identities=34% Similarity=0.582 Sum_probs=317.3
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (515)
+++||+||||||+|+++|+.|++. |++|+|+||.+.+.... +.....++..++++++++|+++|+++.+.+.
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~----G~~v~viE~~~~~~~~~----g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~ 73 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGS----GLRVAVLEQRVPEPLAA----DAPPALRVSAINAASEKLLTRLGVWQDILAR 73 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhC----CCEEEEEeCCCCccccc----CCCCCceeeecchhHHHHHHHcCCchhhhhh
Confidence 358999999999999999999996 99999999998753210 1122457788999999999999999999876
Q ss_pred hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200 134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP 213 (515)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~ 213 (515)
...+...+.+++......+.+..........++.++|..|.+.|.+.+.+.++++++++++|++++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~------------- 140 (400)
T PRK08013 74 RASCYHGMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAW------------- 140 (400)
T ss_pred cCccccEEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEe-------------
Confidence 5557788888876543344444333333445689999999999999999875599999999999976
Q ss_pred CcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEecCCCcEE
Q 010200 214 SATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIA 292 (515)
Q Consensus 214 ~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~ 292 (515)
++..+++++.+|+++++|+||+|||.+|.||+.+++......|...++++.++...+. ...++.+.++++++
T Consensus 141 -------~~~~v~v~~~~g~~i~a~lvVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~ 213 (400)
T PRK08013 141 -------GENEAFLTLKDGSMLTARLVVGADGANSWLRNKADIPLTFWDYQHHALVATIRTEEPHDAVARQVFHGDGILA 213 (400)
T ss_pred -------cCCeEEEEEcCCCEEEeeEEEEeCCCCcHHHHHcCCCccccccCcEEEEEEEeccCCCCCEEEEEEcCCCCEE
Confidence 3355888888999999999999999999999999988888888888888888766544 34567788889999
Q ss_pred EEecCCCc-eEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcce
Q 010200 293 LLPIGDNF-SNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRV 371 (515)
Q Consensus 293 ~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 371 (515)
++|+.++. .+++|..+.+........+.+.|.+.+...++ +. ++ .
T Consensus 214 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~---------------l~-------------~-- 259 (400)
T PRK08013 214 FLPLSDPHLCSIVWSLSPEEAQRMQQAPEEEFNRALAIAFD----NR---------------LG-------------L-- 259 (400)
T ss_pred EEECCCCCeEEEEEEcCHHHHHHHHcCCHHHHHHHHHHHHh----Hh---------------hC-------------c--
Confidence 99998754 67888876655444445566777777765332 00 00 0
Q ss_pred EEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHh
Q 010200 372 VKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAER 451 (515)
Q Consensus 372 ~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r 451 (515)
..+......||+....+++|..+||+|+|||||.++|+.|||+|+||+||..|+++|...+..+.+.....+|+.|+++|
T Consensus 260 ~~~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R 339 (400)
T PRK08013 260 CELESERQVFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLHRQGKDIGQHLYLRRYERSR 339 (400)
T ss_pred eEecCCccEEecceeecccccCCcEEEEechhhcCCccccCchhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 11122233577777778999999999999999999999999999999999999999998776554444456899999999
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcCCCCCCC
Q 010200 452 KPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLP 510 (515)
Q Consensus 452 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 510 (515)
+++...++..++.+.++|+..+++..++|+.++.+++.+|++++.++++++|+...|-.
T Consensus 340 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~R~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~ 398 (400)
T PRK08013 340 KHSAALMLAGMQGFRDLFAGNNPAKKLLRDIGLKLADTLPGVKPQLIRQAMGLNDLPEW 398 (400)
T ss_pred HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHccCcCCccc
Confidence 99999999999999999999999999999999999999999999999999997656543
No 2
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=100.00 E-value=2.3e-51 Score=421.23 Aligned_cols=389 Identities=35% Similarity=0.593 Sum_probs=320.0
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC-CCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhh
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP-ALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ 132 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~ 132 (515)
..+||+||||||+||++|+.|++. |++|+|+|+.. .+. . ......++..++++++++|+++|+++.+.+
T Consensus 3 ~~~dV~IvGaG~~Gl~~A~~L~~~----G~~v~viE~~~~~~~-~-----~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~ 72 (405)
T PRK08850 3 QSVDVAIIGGGMVGLALAAALKES----DLRIAVIEGQLPEEA-L-----NELPDVRVSALSRSSEHILRNLGAWQGIEA 72 (405)
T ss_pred CcCCEEEECccHHHHHHHHHHHhC----CCEEEEEcCCCCccc-c-----cCCCCcceecccHHHHHHHHhCCchhhhhh
Confidence 468999999999999999999996 99999999973 221 0 111346788999999999999999999987
Q ss_pred hhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCC
Q 010200 133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST 212 (515)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~ 212 (515)
....++..+.+|+........++.........++.+++..+.+.|.+.+.+.++++++++++|++++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~------------ 140 (405)
T PRK08850 73 RRAAPYIAMEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAV------------ 140 (405)
T ss_pred hhCCcccEEEEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEe------------
Confidence 65557788899887655555555444444456788999999999999998875699999999999976
Q ss_pred CCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEecCCCcE
Q 010200 213 PSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPI 291 (515)
Q Consensus 213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~ 291 (515)
+...+++++++|+++.||+||+|||.+|.+|+.++.......|+..++++.++...++ ...+++|.+++++
T Consensus 141 --------~~~~~~v~~~~g~~~~a~lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~ 212 (405)
T PRK08850 141 --------GESEAWLTLDNGQALTAKLVVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTVDPHNSVARQIFTPQGPL 212 (405)
T ss_pred --------eCCeEEEEECCCCEEEeCEEEEeCCCCChhHHHcCCCeeEEeeccEEEEEEEEccCCCCCEEEEEEcCCCce
Confidence 3356788888999999999999999999999999988888888888898888765444 4567788899999
Q ss_pred EEEecCC-CceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcc
Q 010200 292 ALLPIGD-NFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPR 370 (515)
Q Consensus 292 ~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 370 (515)
.++|+.+ +.++++|..+..........+.+++.+.+.+.+...+ +
T Consensus 213 ~~lp~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------------------~--------------- 258 (405)
T PRK08850 213 AFLPMSEPNMSSIVWSTEPLRAEALLAMSDEQFNKALTAEFDNRL-------------------G--------------- 258 (405)
T ss_pred EEEECCCCCeEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhh-------------------C---------------
Confidence 9999986 4568889887665555556677788887777553100 0
Q ss_pred eEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHH
Q 010200 371 VVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAE 450 (515)
Q Consensus 371 ~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~ 450 (515)
..........||+....+++|..++|+|+|||||+++|+.|||+|+||+||..|+++|...+..+.+.+...+|+.|+++
T Consensus 259 ~~~~~~~~~~~pl~~~~~~~~~~~rv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~ 338 (405)
T PRK08850 259 LCEVVGERQAFPLKMRYARDFVRERVALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALWQQGRDIGLKRNLRGYERW 338 (405)
T ss_pred cEEEcccccEEecceeeccccccCcEEEEEhhhhcCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Confidence 01222233457887777889999999999999999999999999999999999999999887655555557899999999
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcCCC
Q 010200 451 RKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQR 506 (515)
Q Consensus 451 r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~ 506 (515)
|++++..++..++.+.++|+..+++..++|+.++.++..+|++++.++++.+|+..
T Consensus 339 R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g~~~ 394 (405)
T PRK08850 339 RKAEAAKMIAAMQGFRDLFSGSNPAKKLVRGIGMSLAGQLPGAKDEIMKRALGLKG 394 (405)
T ss_pred HhHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999754
No 3
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=100.00 E-value=8.4e-51 Score=415.56 Aligned_cols=388 Identities=34% Similarity=0.567 Sum_probs=318.3
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhh
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ 132 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~ 132 (515)
...+||+||||||+|+++|+.|++. |++|+||||.+.+....+ ....+...++++++++|+.+|+++.+.+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~----G~~v~liE~~~~~~~~~~-----~~~~r~~~l~~~~~~~l~~lGl~~~~~~ 74 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADA----GLSVALVEGREPPRWQAD-----QPDLRVYAFAADNAALLDRLGVWPAVRA 74 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC----CCEEEEEeCCCCcccccC-----CCCCEEEEecHHHHHHHHHCCchhhhhH
Confidence 3568999999999999999999996 999999999986532211 1235678899999999999999999987
Q ss_pred hhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCC
Q 010200 133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST 212 (515)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~ 212 (515)
....++..+.+|+..+.....++.........++.++|..|.+.|.+.+.+.| ++++++++|++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~g-v~i~~~~~v~~i~~------------ 141 (392)
T PRK08773 75 ARAQPYRRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAG-VQLHCPARVVALEQ------------ 141 (392)
T ss_pred hhCCcccEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCC-CEEEcCCeEEEEEe------------
Confidence 54446777888875544445554433334456789999999999999999887 99999999999976
Q ss_pred CCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEecCCCcE
Q 010200 213 PSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPI 291 (515)
Q Consensus 213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~ 291 (515)
+++.+++++++|+++.+|+||+|||.+|.+|+.++.......|...++.+.++...+. ...++.+.+++++
T Consensus 142 --------~~~~v~v~~~~g~~~~a~~vV~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~ 213 (392)
T PRK08773 142 --------DADRVRLRLDDGRRLEAALAIAADGAASTLRELAGLPVSRHDYAQRGVVAFVDTEHPHQATAWQRFLPTGPL 213 (392)
T ss_pred --------cCCeEEEEECCCCEEEeCEEEEecCCCchHHHhhcCCceEEEeccEEEEEEEEccCCCCCEEEEEeCCCCcE
Confidence 3355778888888999999999999999999999877766677777777776655443 5667788899999
Q ss_pred EEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcce
Q 010200 292 ALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRV 371 (515)
Q Consensus 292 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 371 (515)
.++|.+++...++|..+.+........+.+.+.+.+.+.|. .+...
T Consensus 214 ~~lP~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~--------------------------------- 259 (392)
T PRK08773 214 ALLPFADGRSSIVWTLPDAEAERVLALDEAAFSRELTQAFA-ARLGE--------------------------------- 259 (392)
T ss_pred EEEECCCCceEEEEECCHHHHHHHHcCCHHHHHHHHHHHHh-hhhcC---------------------------------
Confidence 99999999989999987655555556677788888877665 12111
Q ss_pred EEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHh
Q 010200 372 VKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAER 451 (515)
Q Consensus 372 ~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r 451 (515)
+........||+....+++|..+||+|+|||||.++|+.|||+|+||+||..|+++|.+.+..+.+++...+|+.|+++|
T Consensus 260 ~~~~~~~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~y~~~R 339 (392)
T PRK08773 260 VRVASPRTAFPLRRQLVQQYVSGRVLTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHARRADWAAPHRLQRWARTR 339 (392)
T ss_pred eEecCCccEeechhhhhhhhcCCcEEEEechhhcCCCchhchhhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 01112233578777778999999999999999999999999999999999999999998877666666788999999999
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcC
Q 010200 452 KPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGE 504 (515)
Q Consensus 452 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~ 504 (515)
+++...+...++.+.++|+.++++..++|+..+.+++.+|++|+.++++++|.
T Consensus 340 ~~~~~~~~~~~~~l~~~f~~~~~~~~~~r~~~l~~~~~~~~~k~~~~~~~~g~ 392 (392)
T PRK08773 340 RSDNTVAAYGFDAINRVFSNDEMHLTLLRGSVLGLAGKLPPLVDALWKRASGV 392 (392)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999984
No 4
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=5.8e-51 Score=418.59 Aligned_cols=395 Identities=36% Similarity=0.633 Sum_probs=313.7
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (515)
.+||+||||||+|+++|+.|++. |++|+|+|+.+...... ........++..++++++++|+.+|+++.+.+..
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~----G~~v~viE~~~~~~~~~--~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~ 75 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGS----GLEVLLLDGGPLSVKPF--DPQAPFEPRVSALSAASQRILERLGAWDGIAARR 75 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcC----CCEEEEEcCCCcccccc--ccCCCCCccchhhhHHHHHHHHHCChhhhhhHhh
Confidence 47999999999999999999996 99999999987321000 0011123456789999999999999999988755
Q ss_pred ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (515)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~ 214 (515)
..+...+.+++..+...+.+..........++.+++..+.+.|.+.+.+.+ +++++++++++++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~g-v~v~~~~~v~~i~~-------------- 140 (405)
T PRK05714 76 ASPYSEMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSD-IGLLANARLEQMRR-------------- 140 (405)
T ss_pred CccceeEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCC-CEEEcCCEEEEEEE--------------
Confidence 446788888887665555554333333455788999999999999998887 99999999999976
Q ss_pred cccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEecCCCcEEE
Q 010200 215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIAL 293 (515)
Q Consensus 215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~ 293 (515)
.++.++|++++|.++.+|+||+|||.+|.+|+.++.......|...+++..+....+. ...|+.+.+.+++++
T Consensus 141 ------~~~~v~v~~~~g~~~~a~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 214 (405)
T PRK05714 141 ------SGDDWLLTLADGRQLRAPLVVAADGANSAVRRLAGCATREWDYLHHAIVTSVRCSEPHRATAWQRFTDDGPLAF 214 (405)
T ss_pred ------cCCeEEEEECCCCEEEeCEEEEecCCCchhHHhcCCCcccccCCceEEEEEEEcCCCCCCEEEEEcCCCCCeEE
Confidence 3455888888998999999999999999999999887777778777777766554333 456777889999999
Q ss_pred EecCCC----ceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCc
Q 010200 294 LPIGDN----FSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPP 369 (515)
Q Consensus 294 ~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 369 (515)
+|++++ ...++|..+++........+.+.|.+.+.+.|.. +-.
T Consensus 215 ~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~-------------------------------- 261 (405)
T PRK05714 215 LPLERDGDEHWCSIVWSTTPEEAERLMALDDDAFCAALERAFEG-RLG-------------------------------- 261 (405)
T ss_pred eeCCCCCCCCeEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHH-HhC--------------------------------
Confidence 999743 2456677766554455556778888888775541 100
Q ss_pred ceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHH
Q 010200 370 RVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 449 (515)
Q Consensus 370 ~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~ 449 (515)
.+.. ......||+....+++|..+||+|+|||||+|+|+.|||+|+||+||..|+++|......+.+++...+|+.|++
T Consensus 262 ~~~~-~~~~~~~~l~~~~~~~~~~~rv~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~ 340 (405)
T PRK05714 262 EVLS-ADPRLCVPLRQRHAKRYVEPGLALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFER 340 (405)
T ss_pred Ccee-cCCccEEecceeehhhhccCCEEEEEeccccCCCcccccccHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 0111 122335788887889999999999999999999999999999999999999999887654444445789999999
Q ss_pred HhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcC-CCCCCC
Q 010200 450 ERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGE-QRLPLP 510 (515)
Q Consensus 450 ~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~ 510 (515)
.|+++...++..++.+.++|+..+++...+|+..++.++.+|++|+.++++++|. +.+|-.
T Consensus 341 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g~~~~~~~~ 402 (405)
T PRK05714 341 RRMPHNLALMAAMEGFERLFQADPLPLRWLRNTGLKLVDQMPEAKALFVRQALGLSGDLPEL 402 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHhcCCCCCchh
Confidence 9999999999999999999999999999999999999999999999999999996 446643
No 5
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=100.00 E-value=1.4e-50 Score=418.34 Aligned_cols=427 Identities=45% Similarity=0.790 Sum_probs=326.2
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCC--CCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNF--IKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (515)
|||+||||||+|+++|+.|++.+...|++|+|||+.+.+...+. ....+....+++.++++++++|+.+|+++.+.+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 69999999999999999999821112999999999665432210 0001113467999999999999999999999876
Q ss_pred hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCC--CceEEcCCeeEEEEeCCCCCCcccCC
Q 010200 134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTE--FQKTIYPSRLTSMALLPSSSSISVDS 211 (515)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g--~v~i~~~~~v~~i~~~~~~~~~~~~~ 211 (515)
...++..+.+++..+.....++... .....++.+++..+.+.|.+.+.+.+ +++++++++|++++..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~-------- 151 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDN-GKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSK-------- 151 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCC-CCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccc--------
Confidence 5557778888876655455555432 23455788999999999999998876 699999999999975100
Q ss_pred CCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeec--CCceEEEEecCCC
Q 010200 212 TPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--ENYCAWQRFLPAG 289 (515)
Q Consensus 212 ~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g 289 (515)
+.+ ++...+++++.+|++++||+||+|||.+|.||+.+++...+..|.+.++++.+.... .....++.|.++|
T Consensus 152 ~~~-----~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~~v~~~~~~~~~~~~~~f~~~g 226 (437)
T TIGR01989 152 YPN-----DNSNWVHITLSDGQVLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATLKLEEATENDVAWQRFLPTG 226 (437)
T ss_pred ccc-----CCCCceEEEEcCCCEEEeeEEEEecCCCChhHHHcCCCccceeeccEEEEEEEEcccCCCCCeEEEEECCCC
Confidence 000 123568889999999999999999999999999999999889999999999887754 2357788899999
Q ss_pred cEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccc---ccccccc
Q 010200 290 PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATL---SAKECFE 366 (515)
Q Consensus 290 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 366 (515)
++.++|++++..+++|..+..........+.+++...+.+.+..+|.+.|....... .+.++...... .....+.
T Consensus 227 ~~~~lPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~--~~~~l~~~~~~~~~~~~~~~~ 304 (437)
T TIGR01989 227 PIALLPLPDNNSTLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDY--AMEKLNEDIGFRTEGSKSCFQ 304 (437)
T ss_pred CEEEeECCCCCEEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhccccccccccccccc--ccccccccccccccccccccc
Confidence 999999999999999998776666666788899998888877322322221000000 01111100000 0001111
Q ss_pred CCcceEEecc-ceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHH
Q 010200 367 VPPRVVKLAS-ERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLK 445 (515)
Q Consensus 367 i~~~~~~~~~-~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~ 445 (515)
+++.+..+.. ....||+....+++|..+||+|+|||||.++|+.|||+|+||+||..|+++|....+.+.+++...+|+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~~~~L~ 384 (437)
T TIGR01989 305 VPPRVIGVVDKSRAAFPLGLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGADIGSISSLK 384 (437)
T ss_pred cCchhheeecccceeEEecccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHH
Confidence 2332333222 335689888889999999999999999999999999999999999999999999887665665568999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHH
Q 010200 446 KYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNII 498 (515)
Q Consensus 446 ~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 498 (515)
.|+++|++++..++..++.+.++|+..+++...+|+.++.+++.+|++|+.++
T Consensus 385 ~Y~~~R~~~~~~v~~~t~~l~~l~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~ 437 (437)
T TIGR01989 385 PYERERYAKNVVLLGLVDKLHKLYATDFPPVVALRTFGLNLTNYIGPLKNFIM 437 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhhhCHHhHHhhC
Confidence 99999999999999999999999999999999999999999999999999874
No 6
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=1e-50 Score=411.61 Aligned_cols=370 Identities=28% Similarity=0.456 Sum_probs=300.8
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (515)
+||+||||||+|+++|+.|++. |++|+|+|+.+.... .....++++.++++++++|+.+|+++.+.+...
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~----G~~v~l~E~~~~~~~------~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~ 71 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQK----GIKTTIFESKSVKSP------EFFKDIRTTALTPHSKNFLFSIDIWEELEKFVA 71 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcC----CCeEEEecCCCCCCC------ccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcC
Confidence 6899999999999999999996 999999999864310 112346799999999999999999999876544
Q ss_pred cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~ 215 (515)
++..+.+++..+.....+.. ......++.++|.+|.+.|.+.+.+.+++++++++++++++.
T Consensus 72 -~~~~~~~~~~~g~~~~~~~~--~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~--------------- 133 (374)
T PRK06617 72 -EMQDIYVVDNKASEILDLRN--DADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVIS--------------- 133 (374)
T ss_pred -CCcEEEEEECCCceEEEecC--CCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEE---------------
Confidence 77888888776655555543 233446799999999999999999987789999999999976
Q ss_pred ccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEecCCCcEEEE
Q 010200 216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALL 294 (515)
Q Consensus 216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~ 294 (515)
..+.+++.++++ ++++|+||+|||.+|.+|+.++.......| +.++.+.++...++ ...++.+.+.|+++++
T Consensus 134 -----~~~~v~v~~~~~-~~~adlvIgADG~~S~vR~~l~~~~~~~~y-~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~l 206 (374)
T PRK06617 134 -----HNDYSIIKFDDK-QIKCNLLIICDGANSKVRSHYFANEIEKPY-QTALTFNIKHEKPHENCAMEHFLPLGPFALL 206 (374)
T ss_pred -----cCCeEEEEEcCC-EEeeCEEEEeCCCCchhHHhcCCCcccccC-CeEEEEEEeccCCCCCEEEEEecCCCCEEEe
Confidence 335578888776 899999999999999999999877666667 67777777765544 3467888899999999
Q ss_pred ecCCCc-eEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcceEE
Q 010200 295 PIGDNF-SNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVK 373 (515)
Q Consensus 295 p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 373 (515)
|++++. ..++|....+........+.+.+...+...+. +.++ . +.
T Consensus 207 Pl~~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~--------------~-i~ 252 (374)
T PRK06617 207 PLKDQYASSVIWSTSSDQAALIVNLPVEEVRFLTQRNAG-------------------NSLG--------------K-IT 252 (374)
T ss_pred ECCCCCeEEEEEeCCHHHHHHHHcCCHHHHHHHHHHhhc-------------------hhcC--------------c-ee
Confidence 999875 68889886544444445555666555544221 1001 0 12
Q ss_pred eccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHhhH
Q 010200 374 LASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP 453 (515)
Q Consensus 374 ~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r~~ 453 (515)
.......||+....+++|..+||+|+|||||+|+|+.|||+|+||+||..|+++|.. ..+|+.|++.|++
T Consensus 253 ~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gl~Da~~La~~L~~----------~~~L~~Ye~~R~~ 322 (374)
T PRK06617 253 IDSEISSFPLKARIANRYFHNRIVLIADTAHTVHPLAGQGLNQGIKDIEILSMIVSN----------NGTLQEYQKLRQE 322 (374)
T ss_pred eccceeEEEeeeeeccceecCCEEEEEcccccCCCCccccHHHHHHHHHHHHHHHcC----------cchHHHHHHHHhH
Confidence 223345689888888999999999999999999999999999999999999999832 2489999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcC
Q 010200 454 ANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGE 504 (515)
Q Consensus 454 ~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~ 504 (515)
+...++..++.+.++|+...++...+|+..|.+++.+|++|+.++++++|.
T Consensus 323 ~~~~~~~~t~~l~~~f~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g~ 373 (374)
T PRK06617 323 DNFIMYKLTDELNNIFSNYSKNLRCLRQIGFKVINNFKPIKNLITSYAMGK 373 (374)
T ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999984
No 7
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=1.9e-49 Score=409.04 Aligned_cols=388 Identities=32% Similarity=0.565 Sum_probs=305.4
Q ss_pred CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhh
Q 010200 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ 131 (515)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~ 131 (515)
+..++||+||||||+|+++|+.|++. |++|+||||.+.+.. ...++++.++++++++|+.+|+++++.
T Consensus 15 ~~~~~dV~IvGaG~aGl~~A~~L~~~----G~~v~v~E~~~~~~~--------~~~g~~~~l~~~~~~~L~~lGl~~~l~ 82 (415)
T PRK07364 15 RSLTYDVAIVGGGIVGLTLAAALKDS----GLRIALIEAQPAEAA--------AAKGQAYALSLLSARIFEGIGVWEKIL 82 (415)
T ss_pred CccccCEEEECcCHHHHHHHHHHhcC----CCEEEEEecCCcccc--------CCCCcEEEechHHHHHHHHCChhhhhH
Confidence 44569999999999999999999996 999999999987621 123568899999999999999999988
Q ss_pred hhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCC
Q 010200 132 QHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS 211 (515)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~ 211 (515)
+... +...+.+++..+.....+..........++.+.+..+.+.|++.+.+.++++++++++|++++.
T Consensus 83 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~----------- 150 (415)
T PRK07364 83 PQIG-KFRQIRLSDADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEY----------- 150 (415)
T ss_pred hhcC-CccEEEEEeCCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEe-----------
Confidence 7655 6677777765544344444332223344566666689999999998876699999999999976
Q ss_pred CCCcccccccCCeeEEEcCC--C-cEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEecC
Q 010200 212 TPSATTLFTKGHLAKLDLSD--G-TSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLP 287 (515)
Q Consensus 212 ~~~~~~~~~~~~~~~v~~~~--g-~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 287 (515)
+++.+.+++++ + .+++||+||+|||.+|.+|+.++.......+...++.+.++...+. ...+..|.+
T Consensus 151 ---------~~~~~~v~~~~~~~~~~i~adlvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (415)
T PRK07364 151 ---------QQDAATVTLEIEGKQQTLQSKLVVAADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEAPHNDIAYERFWP 221 (415)
T ss_pred ---------cCCeeEEEEccCCcceEEeeeEEEEeCCCCchhHHHhCCCceeecCCCEEEEEEEEccCCCCCEEEEEecC
Confidence 33456677653 2 3699999999999999999999887776777667777766654433 334556678
Q ss_pred CCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccC
Q 010200 288 AGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEV 367 (515)
Q Consensus 288 ~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 367 (515)
.++++++|++++..+++|..+.+........+.+++.+.+.+.+. .|.+.
T Consensus 222 ~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~----------------------------- 271 (415)
T PRK07364 222 SGPFAILPLPGNRCQIVWTAPHAQAKALLALPEAEFLAELQQRYG-DQLGK----------------------------- 271 (415)
T ss_pred CCCeEEeECCCCCEEEEEECCHHHHHHHHCCCHHHHHHHHHHHhh-hhhcC-----------------------------
Confidence 899999999999888888865544344445667788887777554 22111
Q ss_pred CcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHH
Q 010200 368 PPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKY 447 (515)
Q Consensus 368 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y 447 (515)
+ ........+|+....+++|..++++|||||||.++|+.|||+|+||+||..|+++|....+.+.++....+|+.|
T Consensus 272 ---~-~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~DA~~La~~L~~~~~~~~~~~~~~~L~~Y 347 (415)
T PRK07364 272 ---L-ELLGDRFLFPVQLMQSDRYVQHRLALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAHQRGEDIGSLAVLKRY 347 (415)
T ss_pred ---c-eecCCCceecchhhhhhhhcCCcEEEEecccccCCCcccccHhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 0 011122347776667788999999999999999999999999999999999999999876544455446899999
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcCCC
Q 010200 448 EAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQR 506 (515)
Q Consensus 448 ~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~ 506 (515)
++.|+++...++..++.+.++|+.++++..++|+.+++++..+|++++.++++++|+..
T Consensus 348 ~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~ 406 (415)
T PRK07364 348 ERWRKRENWLILGFTDLLDRLFSNQWWPLVVVRRLGLWLLRHVPPLKRLALRLMTGLKG 406 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999765
No 8
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=4.2e-49 Score=401.43 Aligned_cols=381 Identities=33% Similarity=0.603 Sum_probs=302.6
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (515)
.+||+||||||+|+++|+.|++. |++|+|||+.+...... .+....+++.++++++++|+.+|+++.+.+..
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~----G~~v~l~E~~~~~~~~~----~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~ 74 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQ----GRSVAVIEGGEPKAFEP----SQPMDIRVSAISQTSVDLLESLGAWSSIVAMR 74 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhC----CCcEEEEcCCCcccCCC----CCCCCccEEEecHHHHHHHHHCCCchhhhHhh
Confidence 58999999999999999999996 99999999876321000 01123466899999999999999999997754
Q ss_pred ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (515)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~ 214 (515)
..++..+..++... ....+..........++.+.+..|...|.+++.+.++++++++++|++++.
T Consensus 75 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~-------------- 139 (384)
T PRK08849 75 VCPYKRLETWEHPE-CRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEF-------------- 139 (384)
T ss_pred CCccceEEEEeCCC-ceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEE--------------
Confidence 44667777766432 223343323333445688888899999999988876799999999999986
Q ss_pred cccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEecCCCcEEE
Q 010200 215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIAL 293 (515)
Q Consensus 215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~ 293 (515)
+++.+++++++|.++++|+||+|||.+|.+|+.++.....+.|...++.+.+....+. ...++.+.+.|...+
T Consensus 140 ------~~~~~~v~~~~g~~~~~~lvIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~ 213 (384)
T PRK08849 140 ------SAEGNRVTLESGAEIEAKWVIGADGANSQVRQLAGIGITAWDYRQHCMLINVETEQPQQDITWQQFTPSGPRSF 213 (384)
T ss_pred ------cCCeEEEEECCCCEEEeeEEEEecCCCchhHHhcCCCceeccCCCeEEEEEEEcCCCCCCEEEEEeCCCCCEEE
Confidence 3456889999999999999999999999999999887777888887777776655433 567778888899888
Q ss_pred EecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcceEE
Q 010200 294 LPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVK 373 (515)
Q Consensus 294 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 373 (515)
+|+.++...++|+..+.........+.+.+.+.+.+.|+ .+-.. + .
T Consensus 214 ~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~--------------------------------~-~ 259 (384)
T PRK08849 214 LPLCGNQGSLVWYDSPKRIKQLSAMNPEQLRSEILRHFP-AELGE--------------------------------I-K 259 (384)
T ss_pred eEcCCCceEEEEECCHHHHHHHHcCCHHHHHHHHHHHhh-hhhCc--------------------------------E-E
Confidence 999887777888765443333444577888888877654 11000 0 1
Q ss_pred eccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHhhH
Q 010200 374 LASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP 453 (515)
Q Consensus 374 ~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r~~ 453 (515)
. .....||+....+++|..++|+|+|||||+|+|+.|||+|+||+||..|+++|... +. ....+|+.|++.|++
T Consensus 260 ~-~~~~~~~l~~~~~~~~~~grv~LlGDAAH~~~P~~GQG~n~al~Da~~L~~~l~~~---~~--~~~~~L~~Ye~~R~~ 333 (384)
T PRK08849 260 V-LQHGSFPLTRRHAQQYVKNNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLAETEKQ---GV--LNDASFARYERRRRP 333 (384)
T ss_pred e-ccceEeeccccccchhccCCEEEEEcccccCCCCccchHhHHHHHHHHHHHHHHhc---CC--CcHHHHHHHHHHHhH
Confidence 1 12335787777789999999999999999999999999999999999999998642 21 237899999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcC
Q 010200 454 ANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGE 504 (515)
Q Consensus 454 ~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~ 504 (515)
+...++..++.+.++|+..+++...+|+..+..++.+|++|+.++++++|+
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g~ 384 (384)
T PRK08849 334 DNLLMQTGMDLFYKTFSNSLTPLKFVRNAALKLAENSGPLKTQVLKYALGM 384 (384)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccHHHHHHHHHHHcCC
Confidence 999999999999999999989999999999999999999999999999984
No 9
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=100.00 E-value=2.8e-49 Score=402.47 Aligned_cols=381 Identities=34% Similarity=0.512 Sum_probs=324.7
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC-CCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP-ALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (515)
.+||+||||||+||++|+.|++. |++|+||||.+ .. ...++++.++++++++|+++|+.+.+...
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~----G~~V~l~E~~~~~~----------~~~~r~~~l~~~~~~~L~~lG~~~~i~~~ 67 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA----GLDVTLLERAPREL----------LERGRGIALSPNALRALERLGLWDRLEAL 67 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC----CCcEEEEccCcccc----------ccCceeeeecHhHHHHHHHcCChhhhhhc
Confidence 57999999999999999999996 99999999982 22 34458999999999999999998888887
Q ss_pred hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200 134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP 213 (515)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~ 213 (515)
...+...+.++.... ....++.........++.+.+..|.+.|.+.+.+.++++++++++|+.++.
T Consensus 68 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~------------- 133 (387)
T COG0654 68 GVPPLHVMVVDDGGR-RLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQ------------- 133 (387)
T ss_pred cCCceeeEEEecCCc-eeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEE-------------
Confidence 775666666655443 445555555555677899999999999999999998899999999999987
Q ss_pred CcccccccCCeeEEEcC-CCcEEEeeEEEEecCCCchhhhhcC-CccccccCCceEEEEEEEeecC-CceEEEEecCCCc
Q 010200 214 SATTLFTKGHLAKLDLS-DGTSLYAKLVVGADGGKSRVRELAG-FKTTGWSYSQNAIICTVEHNKE-NYCAWQRFLPAGP 290 (515)
Q Consensus 214 ~~~~~~~~~~~~~v~~~-~g~~~~ad~vV~AdG~~S~vr~~l~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~ 290 (515)
+++.+++++. +|++++||+||+|||.+|.||+.++ .......|...++...+..+.+ ....++.+.+.++
T Consensus 134 -------~~~~v~v~l~~dG~~~~a~llVgADG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 206 (387)
T COG0654 134 -------DGDGVTVTLSFDGETLDADLLVGADGANSAVRRAAGIAEFSGRDYGQTALVANVEPEEPHEGRAGERFTHAGP 206 (387)
T ss_pred -------cCCceEEEEcCCCcEEecCEEEECCCCchHHHHhcCCCCccCCCCCceEEEEEeecCCCCCCeEEEEecCCCc
Confidence 3455667777 9999999999999999999999998 4445558899999998888744 4788889999999
Q ss_pred EEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcc
Q 010200 291 IALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPR 370 (515)
Q Consensus 291 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 370 (515)
+.++|++++...++|+............+.+.+...+.+.++. ... + .
T Consensus 207 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~---------------~---------------~ 254 (387)
T COG0654 207 FALLPLPDNRSSVVWSLPPGPAEDLQGLSDEEFLRELQRRLGE--RDP---------------L---------------G 254 (387)
T ss_pred eEEEecCCCceeEEEECChhhHHHHhcCCHHHHHHHHHHhcCc--ccc---------------c---------------c
Confidence 9999999999999999999888888889999998888886651 100 0 0
Q ss_pred eEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHH
Q 010200 371 VVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAE 450 (515)
Q Consensus 371 ~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~ 450 (515)
..........||+....+.+|..+|++|+|||||+|+|+.|||+|+||+||..|++.|.+....+.+ ..+|+.|+++
T Consensus 255 ~~~~~~~~~~~pl~~~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~~~~~---~~~L~~Y~~~ 331 (387)
T COG0654 255 RVTLVSSRSAFPLSLRVAERYRRGRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPRPGAD---AAALAAYEAR 331 (387)
T ss_pred eEEEccccccccccchhhhheecCcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhhcCcc---HHHHHHHHHh
Confidence 1334445556899888899999999999999999999999999999999999999999998875433 7899999999
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcCC
Q 010200 451 RKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ 505 (515)
Q Consensus 451 r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~ 505 (515)
|++++.+++..++.+.+.|+...++...+|+..++++...+..+..++++..|..
T Consensus 332 R~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 386 (387)
T COG0654 332 RRPRAEAIQKLSRALGRLFSADGPFARFLRNLGLRLLDRLPPLREALARLAAGLV 386 (387)
T ss_pred hhhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHhhccCccHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999998999999999887753
No 10
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=1.6e-48 Score=400.58 Aligned_cols=390 Identities=33% Similarity=0.533 Sum_probs=308.6
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (515)
+||+||||||+||++|+.|++++ .|++|+|+||.+... ....+++..++++++++|+.+|+++.+.....
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g--~g~~v~liE~~~~~~--------~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~ 71 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAA--PHLPVTVVDAAPAGA--------WSRDPRASAIAAAARRMLEALGVWDEIAPEAQ 71 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCC--CCCEEEEEeCCCccc--------CCCCcceEEecHHHHHHHHHCCChhhhhhhcC
Confidence 79999999999999999999972 149999999997541 12346799999999999999999999987655
Q ss_pred cccceEEEEeCCCccc-----eeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccC
Q 010200 136 AYFDKMQVWDYTGLGY-----TKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD 210 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~ 210 (515)
+...+.+++..+... ..+..........++.++|..+.+.|.+.+.+.| ++++++++|++++.
T Consensus 72 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g-v~v~~~~~v~~i~~---------- 139 (403)
T PRK07333 72 -PITDMVITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALG-IDLREATSVTDFET---------- 139 (403)
T ss_pred -cccEEEEEeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCC-CEEEcCCEEEEEEE----------
Confidence 667777776432211 2222112223445678999999999999999887 99999999999976
Q ss_pred CCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEecCCC
Q 010200 211 STPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAG 289 (515)
Q Consensus 211 ~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g 289 (515)
....+.+++++|+++.+|+||+|||.+|.+|+.++.......|...++++.+....+. ...++.+.+++
T Consensus 140 ----------~~~~v~v~~~~g~~~~ad~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 209 (403)
T PRK07333 140 ----------RDEGVTVTLSDGSVLEARLLVAADGARSKLRELAGIKTVGWDYGQSGIVCTVEHERPHGGRAEEHFLPAG 209 (403)
T ss_pred ----------cCCEEEEEECCCCEEEeCEEEEcCCCChHHHHHcCCCcccccCCCEEEEEEEEcCCCCCCEEEEEeCCCC
Confidence 3456788888888999999999999999999999887766777877777777655433 45667778999
Q ss_pred cEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCc
Q 010200 290 PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPP 369 (515)
Q Consensus 290 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 369 (515)
+++++|++++..+++|.............+.+.+...+.+.|. .|.+.
T Consensus 210 ~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~------------------------------- 257 (403)
T PRK07333 210 PFAILPLKGNRSSLVWTERTADAERLVALDDLVFEAELEQRFG-HRLGE------------------------------- 257 (403)
T ss_pred ceEEeECCCCCeEEEEECCHHHHHHHHCCCHHHHHHHHHHHhh-hhcCc-------------------------------
Confidence 9999999999988888765443333334455666666766554 11111
Q ss_pred ceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHH
Q 010200 370 RVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 449 (515)
Q Consensus 370 ~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~ 449 (515)
+........||+....+++|..++|+|||||||.++|+.|||+|+||+||..|+++|...+..+.+.....+|+.|++
T Consensus 258 --~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Ye~ 335 (403)
T PRK07333 258 --LKVLGKRRAFPLGLTLARSFVAPRFALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVEAARLGLDIGSLDVLERYQR 335 (403)
T ss_pred --eEeccCccEeechhhhhhhccCCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 011112224666666788999999999999999999999999999999999999999988764433345899999999
Q ss_pred HhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcCC-CCCCCC
Q 010200 450 ERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ-RLPLPL 511 (515)
Q Consensus 450 ~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~ 511 (515)
+|+++...++..++.+.++|+.++++...+|+..+..+..+|++++.++++.+|+. ..|-..
T Consensus 336 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 398 (403)
T PRK07333 336 WRRFDTVRMGVTTDVLNRLFSNDSTLLRSVRDIGLGLVDRLPKLKSFFIRQAAGLTGDTPRLL 398 (403)
T ss_pred HHhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHhCcCCCCchhh
Confidence 99999999999999999999999999999999999999999999999999999976 355443
No 11
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=100.00 E-value=2.5e-48 Score=397.39 Aligned_cols=388 Identities=32% Similarity=0.596 Sum_probs=309.5
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhh
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ 132 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~ 132 (515)
...+||+||||||+|+++|+.|++. |++|+|||+.+...... ......+...+++++.++|+.+|+++.+.+
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~----G~~V~liE~~~~~~~~~----~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~ 74 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQH----GFSVAVLEHAAPAPFDA----DSQPDVRISAISAASVALLKGLGVWDAVQA 74 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcC----CCEEEEEcCCCCCcccc----cCCCCceEEeccHHHHHHHHHcCChhhhhh
Confidence 3569999999999999999999996 99999999986432111 112345678999999999999999999887
Q ss_pred hhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCC
Q 010200 133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST 212 (515)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~ 212 (515)
....++..+..+..... .+.+.......+..++.++|..|.+.|.+.+.+..+++++++++|++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~------------ 141 (391)
T PRK08020 75 MRSHPYRRLETWEWETA-HVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQR------------ 141 (391)
T ss_pred hhCcccceEEEEeCCCC-eEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEE------------
Confidence 54445566665544332 23333222333455788999999999999998874499999999999976
Q ss_pred CCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEecCCCcE
Q 010200 213 PSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPI 291 (515)
Q Consensus 213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~ 291 (515)
.++.+.+.+++|+++++|+||+|||.+|.+|+.++.......|...++.+.++.+.+. ...++.+.++++.
T Consensus 142 --------~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 213 (391)
T PRK08020 142 --------DDDGWELTLADGEEIQAKLVIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCENPPGDSTWQQFTPSGPR 213 (391)
T ss_pred --------cCCeEEEEECCCCEEEeCEEEEeCCCCchhHHHcCCCccccCCCceEEEEEEEecCCCCCEEEEEEcCCCCE
Confidence 3355788888888999999999999999999999887777778888888888766543 5667788888999
Q ss_pred EEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcce
Q 010200 292 ALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRV 371 (515)
Q Consensus 292 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 371 (515)
.++|+.++..+++|+..+.........+.+.+.+.+.+.++ +. ++ .+
T Consensus 214 ~~~p~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~---------------~~--------------~~ 260 (391)
T PRK08020 214 AFLPLFDNWASLVWYDSPARIRQLQAMSMAQLQQEIAAHFP----AR---------------LG--------------AV 260 (391)
T ss_pred EEeECCCCcEEEEEECCHHHHHHHHCCCHHHHHHHHHHHhh----hh---------------cc--------------ce
Confidence 99999988888888876544334445566777777766443 11 00 01
Q ss_pred EEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHh
Q 010200 372 VKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAER 451 (515)
Q Consensus 372 ~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r 451 (515)
... ....||+....+++|..++++|+|||||.++|+.|||+|+||+||..|+++|.+....+.++....+|+.|++.|
T Consensus 261 ~~~--~~~~~pl~~~~~~~~~~~rv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R 338 (391)
T PRK08020 261 TPV--AAGAFPLTRRHALQYVQPGLALVGDAAHTINPLAGQGVNLGYRDVDALLDVLVNARSYGEAWASEAVLKRYQRRR 338 (391)
T ss_pred Eec--cccEeecceeehhhhccCcEEEEechhhccCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 111 223478877778899999999999999999999999999999999999999998766555665678999999999
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcC
Q 010200 452 KPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGE 504 (515)
Q Consensus 452 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~ 504 (515)
+++...++..++.+.++|+.+.+++..+|+.+|..++.+|++|+.++++++|+
T Consensus 339 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g~ 391 (391)
T PRK08020 339 MADNLLMQSGMDLFYAGFSNNLPPLRFARNLGLMAAQRAGVLKRQALKYALGL 391 (391)
T ss_pred HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999984
No 12
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=2.1e-48 Score=397.51 Aligned_cols=381 Identities=29% Similarity=0.501 Sum_probs=310.5
Q ss_pred CCCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhh
Q 010200 51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYV 130 (515)
Q Consensus 51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~ 130 (515)
++++.+||+||||||+|+++|+.|++. |++|+|||+.+.+. ..++..+.+++.++|+++|+++.+
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~----G~~v~liE~~~~~~-----------~~r~~~l~~~s~~~l~~lgl~~~~ 67 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARA----GASVALVAPEPPYA-----------DLRTTALLGPSIRFLERLGLWARL 67 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcC----CCeEEEEeCCCCCC-----------CcchhhCcHHHHHHHHHhCchhhh
Confidence 345678999999999999999999996 99999999987541 234567888999999999999999
Q ss_pred hhhhccccceEEEEeCCCccc----eeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCC
Q 010200 131 QQHRHAYFDKMQVWDYTGLGY----TKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSS 206 (515)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~ 206 (515)
.+... ++..+.+++..+... ..+..........++.+++..+.+.|.+.+.+.+++. +++++|++++.
T Consensus 68 ~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~------ 139 (388)
T PRK07494 68 APHAA-PLQSMRIVDATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRP------ 139 (388)
T ss_pred Hhhcc-eeeEEEEEeCCCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEE------
Confidence 87554 677888887544221 2232222233456789999999999999999887566 88999999976
Q ss_pred cccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEe
Q 010200 207 ISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRF 285 (515)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 285 (515)
.++.+++++++|+++.+|+||+|||.+|.+|+.++.......|+..++.+.+....+. ...++.+
T Consensus 140 --------------~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 205 (388)
T PRK07494 140 --------------REDEVTVTLADGTTLSARLVVGADGRNSPVREAAGIGVRTWSYPQKALVLNFTHSRPHQNVSTEFH 205 (388)
T ss_pred --------------cCCeEEEEECCCCEEEEeEEEEecCCCchhHHhcCCCceecCCCCEEEEEEEeccCCCCCEEEEEe
Confidence 3456788888888999999999999999999999888777888888888888765444 3346677
Q ss_pred cCCCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccc
Q 010200 286 LPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECF 365 (515)
Q Consensus 286 ~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (515)
.+.|+++++|++++..+++|....+........+.+.+.+.+.+.+. ++++.
T Consensus 206 ~~~g~~~~~Pl~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~l~~--------- 257 (388)
T PRK07494 206 TEGGPFTQVPLPGRRSSLVWVVRPAEAERLLALSDAALSAAIEERMQ-------------------SMLGK--------- 257 (388)
T ss_pred CCCCcEEEEECCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHh-------------------hhcCC---------
Confidence 78999999999988889999987766555566777888887776443 11110
Q ss_pred cCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHH
Q 010200 366 EVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLK 445 (515)
Q Consensus 366 ~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~ 445 (515)
.........||+.....++|..++|+|+|||||.++|+.|||+|+||+||..|++.|.... .+.....+|+
T Consensus 258 ------~~~~~~~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~---~~~~~~~~L~ 328 (388)
T PRK07494 258 ------LTLEPGRQAWPLSGQVAHRFAAGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRP---EDPGSAAVLA 328 (388)
T ss_pred ------eEEccCCcEeechHHHHHhhccCceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHhcC---CCcchHHHHH
Confidence 1122233458888777889999999999999999999999999999999999999998732 2334578999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcCC
Q 010200 446 KYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ 505 (515)
Q Consensus 446 ~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~ 505 (515)
.|+++|+++...++..++.+.++|....++...+|+..|.+++.+|++++.++++++|.+
T Consensus 329 ~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~ 388 (388)
T PRK07494 329 AYDRARRPDILSRTASVDLLNRSLLSDFLPVQDLRAAGLHLLYSFGPLRRLFMREGLGPG 388 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999999999975
No 13
>PRK06996 hypothetical protein; Provisional
Probab=100.00 E-value=6.2e-48 Score=394.48 Aligned_cols=379 Identities=30% Similarity=0.471 Sum_probs=304.2
Q ss_pred CCCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhh
Q 010200 51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYV 130 (515)
Q Consensus 51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~ 130 (515)
+.++.+||+||||||+|+++|+.|++.|..+|++|+|+|+.+.+. .....+++.+++.++++|+.+|+|+..
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~--------~~~~~r~~~l~~~~~~~L~~lg~~~~~ 78 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAA--------SANDPRAIALSHGSRVLLETLGAWPAD 78 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCc--------CCCCceEEEecHHHHHHHHhCCCchhc
Confidence 445678999999999999999999997321246899999986441 123467999999999999999998863
Q ss_pred hhhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccC
Q 010200 131 QQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD 210 (515)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~ 210 (515)
. .++..+.+++........+.......+..++.++|..|.+.|.+.+.+.| +++++++++++++.
T Consensus 79 ~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g-~~~~~~~~v~~~~~---------- 143 (398)
T PRK06996 79 A----TPIEHIHVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTP-VRWLTSTTAHAPAQ---------- 143 (398)
T ss_pred C----CcccEEEEecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCC-CEEEcCCeeeeeee----------
Confidence 2 25666777654333334444444444556889999999999999999988 89999999999965
Q ss_pred CCCCcccccccCCeeEEEcCCC---cEEEeeEEEEecCC-CchhhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEe
Q 010200 211 STPSATTLFTKGHLAKLDLSDG---TSLYAKLVVGADGG-KSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRF 285 (515)
Q Consensus 211 ~~~~~~~~~~~~~~~~v~~~~g---~~~~ad~vV~AdG~-~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 285 (515)
....+++++.++ ++++||+||+|||. +|.+|+.++.......|...++++.++...+. ...++.+
T Consensus 144 ----------~~~~v~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 213 (398)
T PRK06996 144 ----------DADGVTLALGTPQGARTLRARIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSAPRPGWAWERF 213 (398)
T ss_pred ----------cCCeEEEEECCCCcceEEeeeEEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccCCCCCEEEEEe
Confidence 446688888754 58999999999997 58889999888888899999999988876443 4567778
Q ss_pred cCCCcEEEEecCCCc---eEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCcccccc
Q 010200 286 LPAGPIALLPIGDNF---SNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAK 362 (515)
Q Consensus 286 ~~~g~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (515)
.+.|++.++|++++. ++++|...++........+.+.+.+.+.+.|. .+.+.
T Consensus 214 ~~~G~~~~lp~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~------------------------ 268 (398)
T PRK06996 214 THEGPLALLPLGGPRQADYALVWCCAPDEAARRAALPDDAFLAELGAAFG-TRMGR------------------------ 268 (398)
T ss_pred cCCCCeEEeECCCCCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHHHhc-cccCc------------------------
Confidence 899999999998654 77888877655544556777888888887654 11000
Q ss_pred ccccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHH
Q 010200 363 ECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEAS 442 (515)
Q Consensus 363 ~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~ 442 (515)
+.. ......||+....+++|..+||+|+|||||+++|+.|||+|+||+||..|+++|... + + ...
T Consensus 269 --------~~~-~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~---~-~--~~~ 333 (398)
T PRK06996 269 --------FTR-IAGRHAFPLGLNAARTLVNGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSDH---G-A--TPL 333 (398)
T ss_pred --------eEE-ecceEEEeeecccccceecCCEEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHhc---C-C--cHH
Confidence 111 122235788877788999999999999999999999999999999999999999752 2 2 267
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhh
Q 010200 443 LLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYAS 502 (515)
Q Consensus 443 al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 502 (515)
+|+.|+++|+++...++..++.+.++|+..+++...+|+.++.+++.+|++|+.++++++
T Consensus 334 ~L~~Y~~~R~~~~~~~~~~s~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~ 393 (398)
T PRK06996 334 ALATFAARRALDRRVTIGATDLLPRLFTVDSRPLAHLRGAALTALEFVPPLKHALARQMM 393 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHhHHHHHHhhCHHHHHHHHHHHc
Confidence 899999999999999999999999999999999999999999999999999999999998
No 14
>PRK09126 hypothetical protein; Provisional
Probab=100.00 E-value=7.1e-48 Score=394.34 Aligned_cols=389 Identities=27% Similarity=0.452 Sum_probs=305.1
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (515)
+++||+||||||+|+++|+.|++. |++|+|+||.+.++.. .....++++.++++++++|+++|+++.+...
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~----G~~v~v~E~~~~~~~~-----~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~ 72 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGS----GLKVTLIERQPLAALA-----DPAFDGREIALTHASREILQRLGAWDRIPED 72 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhC----CCcEEEEeCCCccccc-----CCCCchhHHHhhHHHHHHHHHCCChhhhccc
Confidence 368999999999999999999996 9999999999875211 0122355678899999999999999988776
Q ss_pred hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200 134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP 213 (515)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~ 213 (515)
...+...+.+++......+.++.........++.++|..+.+.|.+.+.+..+++|+++++|++++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~------------- 139 (392)
T PRK09126 73 EISPLRDAKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRT------------- 139 (392)
T ss_pred cCCccceEEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEE-------------
Confidence 5546667777765544344444322333456788999999999999987654499999999999976
Q ss_pred CcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEecCCCcEE
Q 010200 214 SATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIA 292 (515)
Q Consensus 214 ~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~ 292 (515)
.+..++|++++|+++.+|+||+|||.+|.+|+.+++......++...+...+....+. ...+.++.++++++
T Consensus 140 -------~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (392)
T PRK09126 140 -------DDDGAQVTLANGRRLTARLLVAADSRFSATRRQLGIGADMHDFGRTMLVCRMRHELPHHHTAWEWFGYGQTLA 212 (392)
T ss_pred -------cCCeEEEEEcCCCEEEeCEEEEeCCCCchhhHhcCCCccccccCCeEEEEEEeccCCCCCEEEEEecCCCCeE
Confidence 3345778888898999999999999999999999877665666666666555543332 34456666778899
Q ss_pred EEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcceE
Q 010200 293 LLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVV 372 (515)
Q Consensus 293 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 372 (515)
++|+.++..++++..+.+........+.+.+.+++.+.|...+.. .
T Consensus 213 ~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------------------------------~ 258 (392)
T PRK09126 213 LLPLNGHLSSLVLTLPPDQIEALLALDPEAFAAEVTARFKGRLGA----------------------------------M 258 (392)
T ss_pred EeECCCCCEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhccC----------------------------------e
Confidence 999999988888877655433444556777777776655411100 0
Q ss_pred EeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHhh
Q 010200 373 KLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERK 452 (515)
Q Consensus 373 ~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r~ 452 (515)
........+|+.....++|..++|+|+|||||+++|+.|||+|+||+||..|+++|...++.+.+....++|+.|+++|+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~~~~~~~~~~~~l~~Y~~~r~ 338 (392)
T PRK09126 259 RLVSSRHAYPLVAVYAHRFVAKRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAARRGQDIGAASLLERYERKHR 338 (392)
T ss_pred EEcCCCcEeechHHHHHHHhhcceEEEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 11122234676666678899999999999999999999999999999999999999988765444445789999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcCC
Q 010200 453 PANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ 505 (515)
Q Consensus 453 ~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~ 505 (515)
+++..++..++.+.++++.++++...+|+.++..+..+|++++.+++.+.|..
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (392)
T PRK09126 339 LATRPLYHATNAIAALYTDDRPPARLLRRAVLRAANRFPPLKQAIAKQLTGRK 391 (392)
T ss_pred HHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhChHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999864
No 15
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=100.00 E-value=3.7e-47 Score=388.33 Aligned_cols=384 Identities=40% Similarity=0.713 Sum_probs=306.5
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhcc
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHA 136 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~ 136 (515)
||+||||||+||++|+.|++. |++|+||||.+.++..++ ...++++.+++++.++|+++|+++.+.+....
T Consensus 1 dViIvGaG~aGl~~A~~L~~~----G~~v~v~Er~~~~~~~~~-----~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~ 71 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARS----GLKIALIEATPAEAAATP-----GFDNRVSALSAASIRLLEKLGVWDKIEPDRAQ 71 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcC----CCEEEEEeCCCccccCCC-----CCCcceeecCHHHHHHHHHCCchhhhhhhcCC
Confidence 799999999999999999996 999999999998753322 12457899999999999999999999873444
Q ss_pred ccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcc
Q 010200 137 YFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSAT 216 (515)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~ 216 (515)
+...+.+++..+.....+..........++.++|..|.+.|.+.+.+.|+++++++++|++++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~---------------- 135 (385)
T TIGR01988 72 PIRDIHVSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPR---------------- 135 (385)
T ss_pred CceEEEEEeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEe----------------
Confidence 6777888876554444444322233445788999999999999999887799999999999976
Q ss_pred cccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEecCCCcEEEEe
Q 010200 217 TLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLP 295 (515)
Q Consensus 217 ~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p 295 (515)
..+.+.+.+++|+++.+|+||+|||.+|.+|+.++.+.....+...+++..+....+. ...+..+.++++++++|
T Consensus 136 ----~~~~~~v~~~~g~~~~~~~vi~adG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p 211 (385)
T TIGR01988 136 ----HSDHVELTLDDGQQLRARLLVGADGANSKVRQLAGIPTTGWDYGQSAVVANVKHERPHQGTAWERFTPTGPLALLP 211 (385)
T ss_pred ----cCCeeEEEECCCCEEEeeEEEEeCCCCCHHHHHcCCCccccccCCeEEEEEEEecCCCCCEEEEEecCCCCEEEeE
Confidence 3356788888998999999999999999999999876655566666666666654433 34445667889999999
Q ss_pred cCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcceEEec
Q 010200 296 IGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLA 375 (515)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 375 (515)
++++..++.|....+........+.+++...+.+.+. .+.+. ....
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---------------------------------~~~~ 257 (385)
T TIGR01988 212 LPDNRSSLVWTLPPEEAERLLALSDEEFLAELQRAFG-SRLGA---------------------------------ITLV 257 (385)
T ss_pred CCCCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHh-hhcCc---------------------------------eEec
Confidence 9999988888876543333344567777777777554 11110 0111
Q ss_pred cceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHhhHHH
Q 010200 376 SERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPAN 455 (515)
Q Consensus 376 ~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r~~~~ 455 (515)
.....+|+.....++|..++|+|+|||||+|+|+.|||+|+||+||..|++.|...+..+.+.....+|+.|++.|++++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~v~LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~~~~~~~~~~~~~~l~~y~~~r~~~~ 337 (385)
T TIGR01988 258 GERHAFPLSLTHAKRYVAPRLALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRFDN 337 (385)
T ss_pred cCcceeechhhhhhheecCceEEEecccccCCccccchhhhhHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHH
Confidence 12234677666678899999999999999999999999999999999999999987764434444789999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhc
Q 010200 456 IVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASG 503 (515)
Q Consensus 456 ~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g 503 (515)
..++..++.+.+++...+++...+|+..++.+..+|.+++.+.+.++|
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 385 (385)
T TIGR01988 338 AAMLGATDGLNRLFSNDFPPLRLLRNLGLRLLNLLPPLKNFIARYAMG 385 (385)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhCHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999998875
No 16
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=100.00 E-value=3.6e-46 Score=380.49 Aligned_cols=379 Identities=32% Similarity=0.545 Sum_probs=296.6
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCC-cEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G-~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (515)
||+||||||+|+++|+.|+++ | ++|+||||.+.+.... ...+++..++++++++|+++|+++.+.+...
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~----G~~~v~v~E~~~~~~~~~------~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 70 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRL----GKIKIALIEANSPSAAQP------GFDARSLALSYGSKQILEKLGLWPKLAPFAT 70 (382)
T ss_pred CEEEECccHHHHHHHHHHhcC----CCceEEEEeCCCccccCC------CCCCeeEeccHHHHHHHHHCCChhhhHhhcC
Confidence 799999999999999999996 9 9999999998774221 1235689999999999999999998877554
Q ss_pred cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~ 215 (515)
....+.+++........+..........++.++|..|.+.|.+.+.+..+++++++++|++++.
T Consensus 71 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~--------------- 134 (382)
T TIGR01984 71 -PILDIHVSDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIR--------------- 134 (382)
T ss_pred -ccceEEEEcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEE---------------
Confidence 4556666544332333333222333445688999999999999998853399999999999976
Q ss_pred ccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEecCCCcEEEE
Q 010200 216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALL 294 (515)
Q Consensus 216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~ 294 (515)
.+..+++++++|+++.||+||+|||.+|.+|+.++.......++..++...++...+. ...+..+.++++++++
T Consensus 135 -----~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 209 (382)
T TIGR01984 135 -----NQDYVRVTLDNGQQLRAKLLIAADGANSKVRELLSIPTEEHDYNQTALIANIRHEQPHQGCAFERFTPHGPLALL 209 (382)
T ss_pred -----cCCeEEEEECCCCEEEeeEEEEecCCChHHHHHcCCCCcccccCCEEEEEEEEecCCCCCEEEEeeCCCCCeEEC
Confidence 3355788888888999999999999999999999877666667777777766654333 3345566788899999
Q ss_pred ecCCC-ceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcceEE
Q 010200 295 PIGDN-FSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVK 373 (515)
Q Consensus 295 p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 373 (515)
|.+++ ...++|..+.+........+.+.+.+.+.+.+. +. +.. +.
T Consensus 210 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----------~~~------------------~~- 255 (382)
T TIGR01984 210 PLKDNYRSSLVWCLPSKQADTIANLPDAEFLAELQQAFG----WR-----------LGK------------------IT- 255 (382)
T ss_pred cCCCCCCEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHh----hh-----------ccC------------------eE-
Confidence 99988 777888776544433445566677777766543 00 000 01
Q ss_pred eccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHhhH
Q 010200 374 LASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP 453 (515)
Q Consensus 374 ~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r~~ 453 (515)
.......||+.....++|..++|+|+|||||+++|+.|||+|+||+||..|+++|..... +.....+|+.|+++|++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~---~~~~~~~l~~Y~~~r~~ 332 (382)
T TIGR01984 256 QVGERKTYPLKLRIAETHVHPRVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDARI---DLGTYALLQEYLRRRQF 332 (382)
T ss_pred EcCCccEeecchhhhhheecCCEEEEeecccccCCccccchhhhHHHHHHHHHHHHHhcc---CccCHHHHHHHHHHHHH
Confidence 111223467776677889999999999999999999999999999999999999987642 33347899999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhc
Q 010200 454 ANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASG 503 (515)
Q Consensus 454 ~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g 503 (515)
+...++..++.+..+|..++++...+|+..++++..+|.+++.++++.+|
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~p~~~~~~~~~~~~ 382 (382)
T TIGR01984 333 DQFITIGLTDGLNRLFSNHIPLLRALRNLGLLALENFPPLKKRLARQAMG 382 (382)
T ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHhcC
Confidence 99999999999999999998899999999999999999999999998775
No 17
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=7.6e-46 Score=379.84 Aligned_cols=390 Identities=28% Similarity=0.494 Sum_probs=300.5
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (515)
+.+||+||||||+|+++|+.|++++ .+|++|+||||....... .....++++.++++++++|+.+|+++.+.+.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~-~~G~~v~v~E~~~~~~~~-----~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 75 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLS-HGGLPVALIEAFAPESDA-----HPGFDARAIALAAGTCQQLARLGVWQALADC 75 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcc-cCCCEEEEEeCCCccccc-----CCCCCccceeccHHHHHHHHHCCChhhhHhh
Confidence 5689999999999999999999830 028999999996422111 1123456899999999999999999998876
Q ss_pred hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200 134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP 213 (515)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~ 213 (515)
.. +...+.+.+........+..........++.++|..+.+.|.+.+.+.++++++++++|++++.
T Consensus 76 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~------------- 141 (395)
T PRK05732 76 AT-PITHIHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVER------------- 141 (395)
T ss_pred cC-CccEEEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEE-------------
Confidence 54 5556655543322222222222223344678999999999999988765599999999999975
Q ss_pred CcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEecCCCcEE
Q 010200 214 SATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIA 292 (515)
Q Consensus 214 ~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~ 292 (515)
.++.+.+++++|.++.+|+||+|||.+|.+|+.++.......+...++...+...... ...+..+.+.++++
T Consensus 142 -------~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 214 (395)
T PRK05732 142 -------TQGSVRVTLDDGETLTGRLLVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSEAHQGRAFERFTEHGPLA 214 (395)
T ss_pred -------cCCeEEEEECCCCEEEeCEEEEecCCChhhHHhhCCCccceecCCEEEEEEEEecCCCCCEEEEeecCCCCEE
Confidence 3456788888888899999999999999999999877666667777777766654332 34455667888999
Q ss_pred EEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcceE
Q 010200 293 LLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVV 372 (515)
Q Consensus 293 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 372 (515)
++|.+++...++|..+.+........+.+.+.+.+.+.+. |... .+.
T Consensus 215 ~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------------------------------~~~ 261 (395)
T PRK05732 215 LLPMSDGRCSLVWCHPLEDAEEVLSWSDAQFLAELQQAFG--WRLG-------------------------------RIT 261 (395)
T ss_pred EeECCCCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHH--hhhc-------------------------------cee
Confidence 9999999988888876554444445566677777766542 1100 000
Q ss_pred EeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHhh
Q 010200 373 KLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERK 452 (515)
Q Consensus 373 ~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r~ 452 (515)
. ......|++.....++|..++|+|+|||||.++|+.|||+|+||+||..|+++|...++...+.....+|+.|+++|+
T Consensus 262 ~-~~~~~~~~l~~~~~~~~~~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~ 340 (395)
T PRK05732 262 H-AGKRSAYPLALVTAAQQISHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQALARGEDIGDYAVLQRYQQRRQ 340 (395)
T ss_pred e-cCCcceecccccchhhhccCcEEEEeecccccCCccccccchHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 0 111224666666678899999999999999999999999999999999999999887765444434689999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcC
Q 010200 453 PANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGE 504 (515)
Q Consensus 453 ~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~ 504 (515)
++...++..++.+.++|..++++...+|+.++..+..+|++++.++++.+|.
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 392 (395)
T PRK05732 341 QDREATIGFTDGLVRLFANRWAPLVVGRNLGLMAMDLLPPARDWLARRTLGW 392 (395)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccCHHHHHHHHHHHhcc
Confidence 9999999999999999999989999999999999999999999999999986
No 18
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=100.00 E-value=1.5e-45 Score=376.72 Aligned_cols=384 Identities=30% Similarity=0.497 Sum_probs=298.5
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (515)
+++||+||||||+||++|+.|++. |++|+|+||.+.+...++ ....+.+.++++++++|+.+|+++.+...
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~----G~~v~v~E~~~~~~~~~~-----~~~~r~~~l~~~~~~~l~~~g~~~~~~~~ 74 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQS----GLRVALLAPRAPPRPADD-----AWDSRVYAISPSSQAFLERLGVWQALDAA 74 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhC----CCeEEEEecCCCccccCC-----CCCCceEeecHHHHHHHHHcCchhhhhhh
Confidence 468999999999999999999996 999999999987643222 12356789999999999999999988655
Q ss_pred hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200 134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP 213 (515)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~ 213 (515)
...+...+.++.... ..+.+.......+...+.+++..+.+.|.+.+.+.|+++++ +++|++++.
T Consensus 75 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~------------- 139 (388)
T PRK07608 75 RLAPVYDMRVFGDAH-ARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEV------------- 139 (388)
T ss_pred cCCcceEEEEEECCC-ceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEe-------------
Confidence 544566777665432 23333222222334457899999999999999988768888 999999975
Q ss_pred CcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEecCCCcEE
Q 010200 214 SATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIA 292 (515)
Q Consensus 214 ~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~ 292 (515)
.++.+.+++.+|.++.+|+||+|||.+|.+|+.++.......+...++...++.+... ...+.++.++++++
T Consensus 140 -------~~~~~~v~~~~g~~~~a~~vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (388)
T PRK07608 140 -------DPDAATLTLADGQVLRADLVVGADGAHSWVRSQAGIKAERRPYRQTGVVANFKAERPHRGTAYQWFRDDGILA 212 (388)
T ss_pred -------cCCeEEEEECCCCEEEeeEEEEeCCCCchHHHhcCCCccccccCCEEEEEEEEecCCCCCEEEEEecCCCCEE
Confidence 3355788888888899999999999999999999877666666666666666655433 34566677889999
Q ss_pred EEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcceE
Q 010200 293 LLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVV 372 (515)
Q Consensus 293 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 372 (515)
++|++++...+.|.............+++.+.+.+...+.. . ++ . .
T Consensus 213 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---------------~~--------------~-~ 258 (388)
T PRK07608 213 LLPLPDGHVSMVWSARTAHADELLALSPEALAARVERASGG----R---------------LG--------------R-L 258 (388)
T ss_pred EeECCCCCeEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHH----h---------------cC--------------C-c
Confidence 99999998888887654443333445666777766654320 0 00 0 1
Q ss_pred EeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHhh
Q 010200 373 KLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERK 452 (515)
Q Consensus 373 ~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r~ 452 (515)
........+|+.....+.|..++|+|||||||+|+|+.|||+|+||+||..|+++|......+ +....++|+.|+++|+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~rv~liGDAAh~~~P~~GqG~n~ai~da~~La~~L~~~~~~~-~~~~~~~l~~Ye~~R~ 337 (388)
T PRK07608 259 ECVTPAAGFPLRLQRVDRLVAPRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFR-DLGDLRLLRRYERARR 337 (388)
T ss_pred eecCCcceeecchhhhhhhhcCceEEEeccccccCCccccccchhHHHHHHHHHHHHHhhccC-CCccHHHHHHHHHHHH
Confidence 111122236666667788999999999999999999999999999999999999998764222 3334689999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhc
Q 010200 453 PANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASG 503 (515)
Q Consensus 453 ~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g 503 (515)
+++..++..++.+..+++.++.+...+|+.+++.+..+|.+++.++++.+|
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 388 (388)
T PRK07608 338 EDILALQVATDGLQRLFALPGPLARWLRNAGMALVGALPLVKRWLVRHALG 388 (388)
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhChHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999876
No 19
>PRK06185 hypothetical protein; Provisional
Probab=100.00 E-value=1.7e-46 Score=386.00 Aligned_cols=384 Identities=18% Similarity=0.223 Sum_probs=297.8
Q ss_pred CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhh
Q 010200 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ 131 (515)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~ 131 (515)
+...+||+||||||+|+++|+.|++. |++|+|+|+.+... ...++..+++.+.++|+.+|+++.+.
T Consensus 3 ~~~~~dV~IvGgG~~Gl~~A~~La~~----G~~v~liE~~~~~~----------~~~r~~~l~~~s~~~L~~lG~~~~~~ 68 (407)
T PRK06185 3 EVETTDCCIVGGGPAGMMLGLLLARA----GVDVTVLEKHADFL----------RDFRGDTVHPSTLELMDELGLLERFL 68 (407)
T ss_pred ccccccEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCccC----------ccccCceeChhHHHHHHHcCChhHHh
Confidence 34579999999999999999999996 99999999987541 23457889999999999999999987
Q ss_pred hhhccccceEEEEeCCCc-cceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccC
Q 010200 132 QHRHAYFDKMQVWDYTGL-GYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD 210 (515)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~ 210 (515)
+....++..+.++..... ....+..... ....++.+.+..+.+.|.+.+.+.++++++++++|++++..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~--------- 138 (407)
T PRK06185 69 ELPHQKVRTLRFEIGGRTVTLADFSRLPT-PYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEE--------- 138 (407)
T ss_pred hcccceeeeEEEEECCeEEEecchhhcCC-CCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe---------
Confidence 755546677777754321 1222222121 23456789999999999999987755999999999999761
Q ss_pred CCCCcccccccCCeeEEEcCCCc-EEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEecCC
Q 010200 211 STPSATTLFTKGHLAKLDLSDGT-SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPA 288 (515)
Q Consensus 211 ~~~~~~~~~~~~~~~~v~~~~g~-~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 288 (515)
++ ....+.+...+|+ ++++|+||+|||.+|.+|+.++......+|....+++.++..... ...++.+.++
T Consensus 139 --~~------~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (407)
T PRK06185 139 --GG------RVTGVRARTPDGPGEIRADLVVGADGRHSRVRALAGLEVREFGAPMDVLWFRLPREPDDPESLMGRFGPG 210 (407)
T ss_pred --CC------EEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHcCCCccccCCCceeEEEecCCCCCCCcccceEecCC
Confidence 00 1112455555675 799999999999999999999888777777766666555443222 2456788899
Q ss_pred CcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCC
Q 010200 289 GPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVP 368 (515)
Q Consensus 289 g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 368 (515)
++++++|.+ +.++++|..+.+........+.+.+.+.+.+.++ .+...++.
T Consensus 211 g~~~llP~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----------------~~~~~l~~------------ 261 (407)
T PRK06185 211 QGLIMIDRG-DYWQCGYVIPKGGYAALRAAGLEAFRERVAELAP----------------ELADRVAE------------ 261 (407)
T ss_pred cEEEEEcCC-CeEEEEEEecCCCchhhhhhhHHHHHHHHHHhCc----------------cHHHHHhh------------
Confidence 999999997 7888999987766555555666777777766443 11111110
Q ss_pred cceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHH
Q 010200 369 PRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYE 448 (515)
Q Consensus 369 ~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~ 448 (515)
.........||+....+++|..++++|+|||||+++|+.|||+|+||+||..|++.|.+.++.+ +. ...+|+.|+
T Consensus 262 ---~~~~~~~~~~~l~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~~~~~~-~~-~~~~L~~Y~ 336 (407)
T PRK06185 262 ---LKSWDDVKLLDVRVDRLRRWHRPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRRG-RV-SDRDLAAVQ 336 (407)
T ss_pred ---cCCccccEEEEEeccccccccCCCeEEEeccccccCcccccchhHHHHHHHHHHHHHHHHhccC-Cc-cHHHHHHHH
Confidence 1112234457877778889999999999999999999999999999999999999999987665 33 248999999
Q ss_pred HHhhHHHHHHHHHHHHHHHhhcCCC--ChHHHHHHHHHHhcccChhHHHHHHHHh
Q 010200 449 AERKPANIVMMAVLDGFQKAYSVDF--GPLNILRAAAFHGAQYISPLKRNIISYA 501 (515)
Q Consensus 449 ~~r~~~~~~~~~~s~~~~~~~~~~~--~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 501 (515)
+.|+++...++..++.+.++|..+. ++...+|+..|.+++++|++|+.+++++
T Consensus 337 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~ 391 (407)
T PRK06185 337 RRREFPTRVTQALQRRIQRRLLAPALAGRGPLGPPLLLRLLNRLPWLRRLPARLV 391 (407)
T ss_pred HHhhhHHHHHHHHHHHHHHhhccccccCccccCCchHHHHHHhChhHHHhhHHhe
Confidence 9999999999999999999999988 9999999999999999999999999874
No 20
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=100.00 E-value=9.6e-44 Score=376.64 Aligned_cols=378 Identities=23% Similarity=0.347 Sum_probs=285.9
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhh
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ 132 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~ 132 (515)
+..+||+||||||+||++|+.|++. |++|+||||.+.+ ...++++.++++++++|+++|+++.+.+
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~----G~~v~v~Er~~~~----------~~~~ra~~l~~~~~~~L~~lGl~~~l~~ 73 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQY----GVRVLVLERWPTL----------YDLPRAVGIDDEALRVLQAIGLADEVLP 73 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCCC----------CCCCceeeeCHHHHHHHHHcCChhHHHh
Confidence 4568999999999999999999996 9999999999876 2345689999999999999999999988
Q ss_pred hhccccceEEEEeCCCccceeeecccC--CCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccC
Q 010200 133 HRHAYFDKMQVWDYTGLGYTKYNARDV--NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD 210 (515)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~ 210 (515)
... +...+.+++..+.....++.... ......+.+++..+++.|.+.+.+.++++|+++++|++++.
T Consensus 74 ~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~---------- 142 (538)
T PRK06183 74 HTT-PNHGMRFLDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQ---------- 142 (538)
T ss_pred hcc-cCCceEEEcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEE----------
Confidence 665 55667777655543334432111 11122356889999999999998875599999999999987
Q ss_pred CCCCcccccccCCeeEEEcC--CC--cEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC---ceEEE
Q 010200 211 STPSATTLFTKGHLAKLDLS--DG--TSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN---YCAWQ 283 (515)
Q Consensus 211 ~~~~~~~~~~~~~~~~v~~~--~g--~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 283 (515)
+++.++++++ +| .++++|+||+|||.+|.||+.++.......+...++.+.+...... ...+.
T Consensus 143 ----------~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (538)
T PRK06183 143 ----------DDDGVTVTLTDADGQRETVRARYVVGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDPLGGPHTYQ 212 (538)
T ss_pred ----------cCCeEEEEEEcCCCCEEEEEEEEEEecCCCchhHHHHcCCeeeCCCccceEEEEEEecccCccCCCceEE
Confidence 3345777765 46 3799999999999999999999887776666666665554332221 34456
Q ss_pred EecCCCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccc
Q 010200 284 RFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKE 363 (515)
Q Consensus 284 ~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (515)
.+.+++++.++|++++...+.+...+..... ...+.+.+.+.+ . .|...+.
T Consensus 213 ~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~-~~~~~~~~~~~l-~----~~~~~~~----------------------- 263 (538)
T PRK06183 213 YCDPARPYTSVRLPHGRRRWEFMLLPGETEE-QLASPENVWRLL-A----PWGPTPD----------------------- 263 (538)
T ss_pred EECCCCCEEEEEcCCCeEEEEEEeCCCCChh-hcCCHHHHHHHH-H----hhCCCCc-----------------------
Confidence 6788899999999888877766654432211 111233333333 2 2211100
Q ss_pred cccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHH
Q 010200 364 CFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASL 443 (515)
Q Consensus 364 ~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~a 443 (515)
...+ .....|.+..+.+++|..|||+|+|||||.++|+.|||+|+||+||.+|+++|...++.. ....+
T Consensus 264 -------~~~~-~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~~~~g~---~~~~~ 332 (538)
T PRK06183 264 -------DAEL-IRHAVYTFHARVADRWRSGRVLLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLRGR---AGDAL 332 (538)
T ss_pred -------ceEE-EEEEeeeEccEEhhhhccCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHcCC---CcHHH
Confidence 0010 011235555556789999999999999999999999999999999999999998776432 23789
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcCC
Q 010200 444 LKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ 505 (515)
Q Consensus 444 l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~ 505 (515)
|+.|+++|++++..++..+..+.++++..++....+|+.++..+..+|.+++.++...+++.
T Consensus 333 L~~Ye~eR~p~~~~~~~~s~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~ 394 (538)
T PRK06183 333 LDTYEQERRPHARAMIDLAVRLGRVICPTDRLAAALRDAVLRALNYLPPLKRYVLEMRFKPM 394 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHhhhcCcchhhhhhhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999998776643
No 21
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=2.1e-44 Score=342.46 Aligned_cols=434 Identities=34% Similarity=0.578 Sum_probs=359.6
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (515)
..+||+||||||+|+++|..|...+-....+|.++|-...+.-+.+.. ......+...+++.+...++.+|+|+.+...
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~-~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~ 113 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKP-SETFSNRVSSISPASISLFKSIGAWDHIFHD 113 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCcccccccc-CccccceeecCCcchHHHHHhcCHHHHhhhh
Confidence 379999999999999999999987655668999999985543344322 2456677889999999999999999999999
Q ss_pred hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHH--HHHhcCCCceEEcCCeeEEEEeCCCCCCcccCC
Q 010200 134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLL--SCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS 211 (515)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~--~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~ 211 (515)
+..+++++.+|+......+.+....... ..++.+....++..|+ ....+..+++|....++.++... .....
T Consensus 114 R~~~~~~~~v~Ds~s~a~I~~~~d~~~~-d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~-----~~l~~ 187 (481)
T KOG3855|consen 114 RYQKFSRMLVWDSCSAALILFDHDNVGI-DMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIP-----EYLIK 187 (481)
T ss_pred ccccccceeeecccchhhhhhccccccc-cceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccc-----cccCC
Confidence 9999999999998887777776544332 3468888888888888 44455567999999999998761 00011
Q ss_pred CCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC---ceEEEEecCC
Q 010200 212 TPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN---YCAWQRFLPA 288 (515)
Q Consensus 212 ~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 288 (515)
+ +.+....++..||..+.+|++|+|||.+|.+|+..+++...+.|++++++++..+..+. ...||+|.|.
T Consensus 188 ~-------~n~~~~~i~l~dg~~~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~~~~~~~~AwQRFlP~ 260 (481)
T KOG3855|consen 188 N-------DNGMWFHITLTDGINFATDLLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLPT 260 (481)
T ss_pred C-------CCcceEEEEeccCceeeeceeeccccccchhhhhcCCCcccccccceeeeEEEEecccccccchhHHhcCCC
Confidence 1 24467788899999999999999999999999999999999999999999999988733 6899999999
Q ss_pred CcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCccc--c----hhccccCcccccc
Q 010200 289 GPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVD--M----FSWFRGDATLSAK 362 (515)
Q Consensus 289 g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~ 362 (515)
|++.+.|++++..+++|...++....++...++.|.+.++.+|...+....-....+... . .+++... ...
T Consensus 261 GpiAllpl~d~~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~---k~~ 337 (481)
T KOG3855|consen 261 GPIALLPLSDTLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTS---KRL 337 (481)
T ss_pred CceeecccccccccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhcchhhccHHHHhcc---Ccc
Confidence 999999999999999999999999899999999999999998853332222111000000 0 1111111 111
Q ss_pred ccccCCcceEEeccceee-eccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchH
Q 010200 363 ECFEVPPRVVKLASERMV-FPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEA 441 (515)
Q Consensus 363 ~~~~i~~~~~~~~~~~~~-~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~ 441 (515)
...+.|+.+.++...... ||+...++..|..+|+.|+|||||.++|..|||.|+++.|+..|.+.|.++..++.|+++.
T Consensus 338 ~~~q~pp~V~~v~dksRa~FPLgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~DlgS~ 417 (481)
T KOG3855|consen 338 ANQQYPPSVFEVGDKSRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGLDLGSV 417 (481)
T ss_pred cccccCCeEEEecccceeecccccccHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhcccccch
Confidence 223688889998887665 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcC
Q 010200 442 SLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGE 504 (515)
Q Consensus 442 ~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~ 504 (515)
.-|+.|+.+|.+....++...+.+.++|+.+.++...+|-+.+.+.++++++|.+||.+.++-
T Consensus 418 ~~L~~y~~~~~~~N~~ll~~vdkl~klY~t~~p~vV~~rt~GL~~~n~l~PvKN~im~~~~~~ 480 (481)
T KOG3855|consen 418 EHLEPYERERLQHNYVLLGAVDKLHKLYATSAPPVVLLRTFGLQLTNALAPVKNFIMVTASKK 480 (481)
T ss_pred hhhhHHHHHHhhhcchHHHHHHHHHHHHhccCCcEEEEeccchhhccccccHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999998763
No 22
>PRK07588 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-43 Score=362.30 Aligned_cols=379 Identities=17% Similarity=0.200 Sum_probs=273.8
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (515)
+||+||||||+||++|+.|++. |++|+||||.+... ..+.++.++++++++|+++|+++.+.+.+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~----G~~v~v~E~~~~~~----------~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~ 66 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRY----GHEPTLIERAPELR----------TGGYMVDFWGVGYEVAKRMGITDQLREAGY 66 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHC----CCceEEEeCCCCcc----------CCCeEEeccCcHHHHHHHcCCHHHHHhccC
Confidence 4899999999999999999996 99999999997652 235578889999999999999999987665
Q ss_pred cccceEEEEeCCCccceeeecccCCC--CcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200 136 AYFDKMQVWDYTGLGYTKYNARDVNK--EILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP 213 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~ 213 (515)
+...+.+++..+.....++...... ....+.+.|..|.+.|.+.+.. + ++|+++++|++++.
T Consensus 67 -~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~-~-v~i~~~~~v~~i~~------------- 130 (391)
T PRK07588 67 -QIEHVRSVDPTGRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDG-Q-VETIFDDSIATIDE------------- 130 (391)
T ss_pred -CccceEEEcCCCCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhc-C-eEEEeCCEEeEEEE-------------
Confidence 6777888876554333333222211 1123579999999999987653 4 89999999999976
Q ss_pred CcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCcccc-ccCC-ceEEEEEEEeec-CCceEEEEec-CCC
Q 010200 214 SATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTG-WSYS-QNAIICTVEHNK-ENYCAWQRFL-PAG 289 (515)
Q Consensus 214 ~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~-~~~~-~~~~~~~~~~~~-~~~~~~~~~~-~~g 289 (515)
+++.+++.+++|+++.+|+||+|||.+|.+|+.+...... ..+. .......+.... .....+..+. +++
T Consensus 131 -------~~~~v~v~~~~g~~~~~d~vIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~ 203 (391)
T PRK07588 131 -------HRDGVRVTFERGTPRDFDLVIGADGLHSHVRRLVFGPERDFEHYLGCKVAACVVDGYRPRDERTYVLYNEVGR 203 (391)
T ss_pred -------CCCeEEEEECCCCEEEeCEEEECCCCCccchhhccCCccceEEEcCcEEEEEEcCCCCCCCCceEEEEeCCCC
Confidence 4456889999999999999999999999999986322221 1121 111122221111 1233344444 566
Q ss_pred cEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCc
Q 010200 290 PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPP 369 (515)
Q Consensus 290 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 369 (515)
++.++|+.++...++|....+.. ....+.+...+.+.+.+. .|... ....+...
T Consensus 204 ~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~-~~~~~-------~~~~~~~~---------------- 257 (391)
T PRK07588 204 QVARVALRGDRTLFLFIFRAEHD--NPPLTPAEEKQLLRDQFG-DVGWE-------TPDILAAL---------------- 257 (391)
T ss_pred EEEEEecCCCCeEEEEEEEcCCc--cccCCHHHHHHHHHHHhc-cCCcc-------HHHHHHhh----------------
Confidence 89999998887766666543321 122455667777777664 33221 00111110
Q ss_pred ceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHH
Q 010200 370 RVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 449 (515)
Q Consensus 370 ~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~ 449 (515)
.........+.....+++|..|+|+|+|||||.|+|+.|||+|+||+||..|++.|.... .+ ...+|+.|++
T Consensus 258 ---~~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~---~~--~~~al~~Y~~ 329 (391)
T PRK07588 258 ---DDVEDLYFDVVSQIRMDRWSRGRVALVGDAAACPSLLGGEGSGLAITEAYVLAGELARAG---GD--HRRAFDAYEK 329 (391)
T ss_pred ---hcccchheeeeeeeccCccccCCEEEEEccccCCCCccCCcHHHHHHHHHHHHHHHHhcc---CC--HHHHHHHHHH
Confidence 000000011222234678999999999999999999999999999999999999997632 12 3789999999
Q ss_pred HhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcCCC
Q 010200 450 ERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQR 506 (515)
Q Consensus 450 ~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~ 506 (515)
.|++++..++..++.+.++++..+++...+|+..+..+. .|++++.+++.....++
T Consensus 330 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~-~~~~~~~~~~~~~~~~~ 385 (391)
T PRK07588 330 RLRPFIAGKQAAAAKFLSVFAPKTRFGLYVRNIAMKIMN-LPPVADFVGAGSFRDDF 385 (391)
T ss_pred HHHHHHHHHHhhcccccccccCCCHHHHHHHHHHHHHhc-cchhhhhhhhccccCCC
Confidence 999999999999999999999999999999999999999 79999999987766554
No 23
>PRK06834 hypothetical protein; Provisional
Probab=100.00 E-value=5.7e-43 Score=364.22 Aligned_cols=368 Identities=24% Similarity=0.285 Sum_probs=282.4
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (515)
.++||+||||||+|+++|+.|++. |++|+||||.+.+. ....++..++++++++|+.+|+++.+.+.
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~----G~~v~vlEr~~~~~---------~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~ 68 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALA----GVDVAIVERRPNQE---------LVGSRAGGLHARTLEVLDQRGIADRFLAQ 68 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCCCC---------CCCcceeeECHHHHHHHHHcCcHHHHHhc
Confidence 358999999999999999999996 99999999988651 12346788999999999999999998875
Q ss_pred hccccceEEEEeCCCccceeeecccCC-CCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCC
Q 010200 134 RHAYFDKMQVWDYTGLGYTKYNARDVN-KEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST 212 (515)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~ 212 (515)
.. ......+ . ...+...... ...+++.+.+..+++.|.+.+++.| ++|+++++|++++.
T Consensus 69 ~~-~~~~~~~-~-----~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~g-v~i~~~~~v~~v~~------------ 128 (488)
T PRK06834 69 GQ-VAQVTGF-A-----ATRLDISDFPTRHNYGLALWQNHIERILAEWVGELG-VPIYRGREVTGFAQ------------ 128 (488)
T ss_pred CC-cccccee-e-----eEecccccCCCCCCccccccHHHHHHHHHHHHHhCC-CEEEcCCEEEEEEE------------
Confidence 43 2111111 0 1111111111 1234567889999999999999887 99999999999986
Q ss_pred CCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCCceEEEEecCCCcEE
Q 010200 213 PSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIA 292 (515)
Q Consensus 213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 292 (515)
+++.+.+++.+|+++++|+||+|||.+|.+|+.+++...+..+...++.+.+....... ....+.+.+...
T Consensus 129 --------~~~~v~v~~~~g~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~dv~~~~~~~-~~~~~~~~g~~~ 199 (488)
T PRK06834 129 --------DDTGVDVELSDGRTLRAQYLVGCDGGRSLVRKAAGIDFPGWDPTTSYLIAEVEMTEEPE-WGVHRDALGIHA 199 (488)
T ss_pred --------cCCeEEEEECCCCEEEeCEEEEecCCCCCcHhhcCCCCCCCCcceEEEEEEEEecCCCC-cceeeCCCceEE
Confidence 34567888888888999999999999999999999988888888888888877654321 112345567777
Q ss_pred EEecC-CCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcce
Q 010200 293 LLPIG-DNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRV 371 (515)
Q Consensus 293 ~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 371 (515)
+.|.. ++.++++|...... .....+.+++...+.+.+...+...
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~g~~~~~~--------------------------------- 244 (488)
T PRK06834 200 FGRLEDEGPVRVMVTEKQVG--ATGEPTLDDLREALIAVYGTDYGIH--------------------------------- 244 (488)
T ss_pred EeccCCCCeEEEEEecCCCC--CCCCCCHHHHHHHHHHhhCCCCccc---------------------------------
Confidence 88876 56777777654332 1224567778777777553111100
Q ss_pred EEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHh
Q 010200 372 VKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAER 451 (515)
Q Consensus 372 ~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r 451 (515)
.......|+...+.+++|..|||+|+|||||.++|+.|||+|++|+||.+|+++|...++.. ....+|+.|+++|
T Consensus 245 --~~~~~~~~~~~~r~a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA~nLawkLa~vl~g~---~~~~lLd~Ye~eR 319 (488)
T PRK06834 245 --SPTWISRFTDMARQAASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKGT---SPESLLDTYHAER 319 (488)
T ss_pred --cceeEEeccccceecccccCCcEEEEeeccccCCccccccccccHHHHHHHHHHHHHHHcCC---CcHHHHHHHHHHH
Confidence 00112246667777899999999999999999999999999999999999999999988643 3478999999999
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcCC
Q 010200 452 KPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ 505 (515)
Q Consensus 452 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~ 505 (515)
++.+..++..+..+..++. .++....+|+.++.++...+. ++.++...+|+.
T Consensus 320 rp~~~~~~~~t~~~~~~~~-~~~~~~~lR~~~~~~~~~~~~-~~~~~~~~~g~~ 371 (488)
T PRK06834 320 HPVAARVLRNTMAQVALLR-PDDRTEALRDIVAELLGMDEP-RKRIAAMMSGLD 371 (488)
T ss_pred HHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHhcCcHH-HHHHHHHHhcCC
Confidence 9999999999999888886 677889999999998887554 889999999874
No 24
>PRK08244 hypothetical protein; Provisional
Probab=100.00 E-value=9.8e-43 Score=365.80 Aligned_cols=373 Identities=21% Similarity=0.267 Sum_probs=282.5
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (515)
++||+||||||+||++|+.|++. |++|+||||.+.+ ...++++.++++++++|+++|+++.+.+..
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~----G~~v~viEr~~~~----------~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~ 67 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALA----GVKTCVIERLKET----------VPYSKALTLHPRTLEILDMRGLLERFLEKG 67 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCCC----------CCCcceeEecHHHHHHHHhcCcHHHHHhhc
Confidence 48999999999999999999996 9999999999866 345679999999999999999999998765
Q ss_pred ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (515)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~ 214 (515)
. +.....++.... ...+.... ....+.+.+++..+.+.|.+.+.+.| +++++++++++++.
T Consensus 68 ~-~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~i~q~~le~~L~~~~~~~g-v~v~~~~~v~~i~~-------------- 128 (493)
T PRK08244 68 R-KLPSGHFAGLDT--RLDFSALD-TSSNYTLFLPQAETEKVLEEHARSLG-VEIFRGAEVLAVRQ-------------- 128 (493)
T ss_pred c-cccceEEecccc--cCCcccCC-CCCCcEEEecHHHHHHHHHHHHHHcC-CeEEeCCEEEEEEE--------------
Confidence 4 444455543221 12222111 12234577999999999999998887 99999999999976
Q ss_pred cccccccCCeeEEEcC--CC-cEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEecCCCc
Q 010200 215 ATTLFTKGHLAKLDLS--DG-TSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGP 290 (515)
Q Consensus 215 ~~~~~~~~~~~~v~~~--~g-~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~ 290 (515)
.++.+++.+. +| .++++|+||+|||.+|.||+.+++...+..+...++.+.+....+. ...+..+.++++
T Consensus 129 ------~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 202 (493)
T PRK08244 129 ------DGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIVRKQAGIAFPGTDATFTAMLGDVVLKDPPPSSVLSLCTREGG 202 (493)
T ss_pred ------cCCeEEEEEEeCCccEEEEeCEEEECCCCChHHHHhcCCCccCCCcceEEEEEEEEecCCCCcceeEEEeCCce
Confidence 3344555553 45 4799999999999999999999888777777777777766554333 345566788899
Q ss_pred EEEEecCCCceEEEEEcCCCCh-HHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCc
Q 010200 291 IALLPIGDNFSNIVWTMNPKDA-SDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPP 369 (515)
Q Consensus 291 ~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 369 (515)
++++|++++..++++..+.... ......+.+++.+.+.+.+..... +
T Consensus 203 ~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------------------------~-- 250 (493)
T PRK08244 203 VMIVPLSGGIYRVLIIDPERPQVPKDEPVTLEELKTSLIRICGTDFG------------------------------L-- 250 (493)
T ss_pred EEEEECCCCeEEEEEEcCCcccccCCCCCCHHHHHHHHHHhhCCCCC------------------------------c--
Confidence 9999999888877765433211 112234667777777664421000 0
Q ss_pred ceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHH
Q 010200 370 RVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 449 (515)
Q Consensus 370 ~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~ 449 (515)
. .......|++..+.+++|..|||+|+|||||.++|+.|||+|+||+||.+|++.|...++.. ....+|+.|++
T Consensus 251 --~-~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~---~~~~lL~~Ye~ 324 (493)
T PRK08244 251 --N-DPVWMSRFGNATRQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIKGW---APDWLLDSYHA 324 (493)
T ss_pred --C-CeeEEEecccceeeHhhhccCcEEEeecceeccCCccccccccchhhHHHHHHHHHHHHcCC---CCchhhhhhHH
Confidence 0 00011236666667789999999999999999999999999999999999999999987532 33689999999
Q ss_pred HhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcCCC
Q 010200 450 ERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQR 506 (515)
Q Consensus 450 ~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~ 506 (515)
+|++.+..++..++.+..++... +....+|+.+..++ .++.+++.+....+|++.
T Consensus 325 eR~~~~~~~~~~~~~~~~~~~~~-~~~~~~R~~~~~~~-~~~~~~~~~~~~~~~~~~ 379 (493)
T PRK08244 325 ERHPVGTALLRNTEVQTKLFDFT-RPGLALRSMLSDLL-GFPEVNRYLAGQISALDV 379 (493)
T ss_pred HHHHHHHHHHHHhHHHHHHhcCC-chhHHHHHHHHHHh-cchHHHHHHHHHHhcCCc
Confidence 99999999999999999988654 77788898866555 468889999888877764
No 25
>PRK07045 putative monooxygenase; Reviewed
Probab=100.00 E-value=2.2e-42 Score=352.98 Aligned_cols=371 Identities=20% Similarity=0.312 Sum_probs=260.9
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhh
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ 132 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~ 132 (515)
+.++||+||||||+||++|+.|++. |++|+||||.+.++ ..+++..++++++++|+++|+++.+.+
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~----G~~v~v~E~~~~~~----------~~~~~~~l~~~~~~~L~~lGl~~~~~~ 68 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGAR----GHSVTVVERAARNR----------AQNGADLLKPSGIGVVRAMGLLDDVFA 68 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhc----CCcEEEEeCCCccc----------CCCcccccCccHHHHHHHcCCHHHHHh
Confidence 4568999999999999999999996 99999999999773 222356799999999999999999887
Q ss_pred hhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCC
Q 010200 133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST 212 (515)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~ 212 (515)
........+.++.. +.....++........+.+.+.|..|.+.|.+.+.+.++++++++++|++++. +
T Consensus 69 ~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~-----------~ 136 (388)
T PRK07045 69 AGGLRRDAMRLYHD-KELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIER-----------D 136 (388)
T ss_pred cccccccceEEecC-CcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEE-----------C
Confidence 65433445555432 22222222211111122346889999999999987766699999999999976 1
Q ss_pred CCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhc-CCccccccCCceEEEEEEEeecCCc-eEEEEec-CCC
Q 010200 213 PSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELA-GFKTTGWSYSQNAIICTVEHNKENY-CAWQRFL-PAG 289 (515)
Q Consensus 213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~g 289 (515)
+ ++..+.|++++|+++.+|+||+|||.+|.+|+.+ +.......|.....++.+....... .....+. +.+
T Consensus 137 ~-------~~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (388)
T PRK07045 137 A-------DGTVTSVTLSDGERVAPTVLVGADGARSMIRDDVLRMPAERVPYATPMAFGTIALTDSVRECNRLYVDSNQG 209 (388)
T ss_pred C-------CCcEEEEEeCCCCEEECCEEEECCCCChHHHHHhhCCCcccCCCCcceeEEEEeccCCccccceEEEcCCCc
Confidence 1 1224578888999999999999999999999974 5444444455455555555433222 2222333 356
Q ss_pred cEEEEecCCCceEEEEEcCCCChHHh-hcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCC
Q 010200 290 PIALLPIGDNFSNIVWTMNPKDASDC-KSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVP 368 (515)
Q Consensus 290 ~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 368 (515)
+++++|+.++..+++|..+.+..... ...+.+.+.+.+...+. +. ..+.++.
T Consensus 210 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-------~~~~~~~---------------- 262 (388)
T PRK07045 210 LAYFYPIGDQATRLVVSFPADEMQGYLADTTRTKLLARLNEFVG----DE-------SADAMAA---------------- 262 (388)
T ss_pred eEEEEEcCCCcEEEEEEeccccchhccCCCCHHHHHHHHhhhcC----cc-------chHHHhc----------------
Confidence 67889998888888887765443222 12334444444443221 11 0001110
Q ss_pred cceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHH
Q 010200 369 PRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYE 448 (515)
Q Consensus 369 ~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~ 448 (515)
.........+|+....+++|..+||+|||||||+|+|+.|||+|+||+||..|+++|...+.... ....+|+.|+
T Consensus 263 ---~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~--~~~~~L~~Ye 337 (388)
T PRK07045 263 ---IGAGTAFPLIPLGRMNLDRYHKRNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLSGQI--ALADALERFE 337 (388)
T ss_pred ---cCcccccceeecCccccccccCCCEEEEEccccccCCCccccHHHHHHHHHHHHHHHHhhcCCch--hHHHHHHHHH
Confidence 00001111235555567889999999999999999999999999999999999999988654322 2378999999
Q ss_pred HHhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcc
Q 010200 449 AERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQ 488 (515)
Q Consensus 449 ~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~ 488 (515)
++|+++...++..++.+.+.|+.........|.++...-.
T Consensus 338 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (388)
T PRK07045 338 RIRRPVNEAVISYGHALATTYHDRAALVANFRSQLQTSGR 377 (388)
T ss_pred HHhhhHHHHHHhhhHHHhhhcccchhHHHHHHhhhhcccc
Confidence 9999999999999999999999998888888887765443
No 26
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=100.00 E-value=1.2e-41 Score=347.54 Aligned_cols=378 Identities=15% Similarity=0.108 Sum_probs=263.9
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (515)
++||+||||||+||++|+.|++. |++|+||||.+... .....++..+.++++++|+++|+++.+.+..
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~----G~~v~v~E~~~~~~--------~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~ 69 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLA----GIDSVVLERRSREY--------VEGRIRAGVLEQGTVDLLREAGVGERMDREG 69 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhc----CCCEEEEEcCCccc--------cccccceeEECHhHHHHHHHcCChHHHHhcC
Confidence 57999999999999999999996 99999999998531 0112345569999999999999999998766
Q ss_pred ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (515)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~ 214 (515)
. ....+.++..... ..++............+.+..+.+.|++.+.+.| +++++++++++++..
T Consensus 70 ~-~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~g-v~v~~~~~v~~i~~~------------- 132 (392)
T PRK08243 70 L-VHDGIELRFDGRR--HRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAG-GPIRFEASDVALHDF------------- 132 (392)
T ss_pred C-ccCcEEEEECCEE--EEeccccccCCceEEEeCcHHHHHHHHHHHHhCC-CeEEEeeeEEEEEec-------------
Confidence 5 6677777664322 2333222222233345678899999998888777 899999999998630
Q ss_pred cccccccCCeeEEEc-CCCc--EEEeeEEEEecCCCchhhhhcCCccccc---cCCceEEEEEEE-eecCCceEEEEecC
Q 010200 215 ATTLFTKGHLAKLDL-SDGT--SLYAKLVVGADGGKSRVRELAGFKTTGW---SYSQNAIICTVE-HNKENYCAWQRFLP 287 (515)
Q Consensus 215 ~~~~~~~~~~~~v~~-~~g~--~~~ad~vV~AdG~~S~vr~~l~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~ 287 (515)
++..+.|++ .+|+ ++++|+||+|||.+|.+|++++...... .+.. .+.+.+. ........+....+
T Consensus 133 ------~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S~vR~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 205 (392)
T PRK08243 133 ------DSDRPYVTYEKDGEEHRLDCDFIAGCDGFHGVSRASIPAGALRTFERVYPF-GWLGILAEAPPVSDELIYANHE 205 (392)
T ss_pred ------CCCceEEEEEcCCeEEEEEeCEEEECCCCCCchhhhcCcchhhceecccCc-eEEEEeCCCCCCCCceEEeeCC
Confidence 123345555 3564 6899999999999999999996543211 1111 1122221 11111222222233
Q ss_pred CCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccC
Q 010200 288 AGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEV 367 (515)
Q Consensus 288 ~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 367 (515)
.+..++.+.+.+...+++.+..... ....+.+.+.+.+.+.+. .+..... ..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~-~~~~~~~---------~~---------------- 257 (392)
T PRK08243 206 RGFALCSMRSPTRSRYYLQCPLDDK--VEDWSDERFWDELRRRLP-PEDAERL---------VT---------------- 257 (392)
T ss_pred CceEEEecCCCCcEEEEEEecCCCC--cccCChhHHHHHHHHhcC-ccccccc---------cc----------------
Confidence 4444555545555556555543321 223345666677776554 1100000 00
Q ss_pred CcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHH
Q 010200 368 PPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKY 447 (515)
Q Consensus 368 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y 447 (515)
..+ .....+|+.....++|..|||+|||||||.++|+.|||+|+||+||..|++.|...++.+ ...+|+.|
T Consensus 258 -~~~----~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~----~~~~L~~Y 328 (392)
T PRK08243 258 -GPS----IEKSIAPLRSFVAEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEFYREG----DTALLDAY 328 (392)
T ss_pred -Ccc----ccccceeeeeceeccceeCCEEEEecccccCCCCcCcchhHHHHHHHHHHHHHHHHhccC----CHHHHHHH
Confidence 000 001124555556778989999999999999999999999999999999999999876542 27899999
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhcC---CCChHHHHHHHHHHhcccChhHHHHHHHHhhcCC
Q 010200 448 EAERKPANIVMMAVLDGFQKAYSV---DFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ 505 (515)
Q Consensus 448 ~~~r~~~~~~~~~~s~~~~~~~~~---~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~ 505 (515)
++.|++++..++..++.+..+++. ...+...+|+..|+.+..+|...+.+..+.+|+.
T Consensus 329 e~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (392)
T PRK08243 329 SATALRRVWKAERFSWWMTSMLHRFPDDDPFDQRIQLAELDYLTSSRAAATTLAENYVGLP 389 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCHHHHHHHHHhccCCC
Confidence 999999999999999999998776 4557778999999999999999999999999984
No 27
>PRK06753 hypothetical protein; Provisional
Probab=100.00 E-value=2.3e-41 Score=343.86 Aligned_cols=353 Identities=18% Similarity=0.237 Sum_probs=259.2
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (515)
+||+||||||+||++|+.|++. |++|+||||++.+.. .++++.+++++++.|+.+|+++.+.....
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~----g~~v~v~E~~~~~~~----------~g~gi~l~~~~~~~L~~~gl~~~~~~~~~ 66 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQ----GHEVKVFEKNESVKE----------VGAGIGIGDNVIKKLGNHDLAKGIKNAGQ 66 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCcccc----------cccceeeChHHHHHHHhcChHHHHHhcCC
Confidence 4799999999999999999996 999999999997732 34589999999999999999998877554
Q ss_pred cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~ 215 (515)
+...+.+++..+.....++. .....++.++|..|.+.|.+.+.. .+|+++++|++++.
T Consensus 67 -~~~~~~~~~~~g~~~~~~~~---~~~~~~~~i~R~~l~~~L~~~~~~---~~i~~~~~v~~i~~--------------- 124 (373)
T PRK06753 67 -ILSTMNLLDDKGTLLNKVKL---KSNTLNVTLHRQTLIDIIKSYVKE---DAIFTGKEVTKIEN--------------- 124 (373)
T ss_pred -cccceeEEcCCCCEEeeccc---ccCCccccccHHHHHHHHHHhCCC---ceEEECCEEEEEEe---------------
Confidence 66777887765432222221 122345789999999999998763 57999999999976
Q ss_pred ccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeec--CCceEEEEecCCCcEEE
Q 010200 216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--ENYCAWQRFLPAGPIAL 293 (515)
Q Consensus 216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~ 293 (515)
++..+++++++|+++.+|+||+|||.+|.+|+.++........+..++.+.++... ........+.+.+++++
T Consensus 125 -----~~~~v~v~~~~g~~~~~~~vigadG~~S~vR~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 199 (373)
T PRK06753 125 -----ETDKVTIHFADGESEAFDLCIGADGIHSKVRQSVNADSKVRYQGYTCFRGLIDDIDLKLPDCAKEYWGTKGRFGI 199 (373)
T ss_pred -----cCCcEEEEECCCCEEecCEEEECCCcchHHHHHhCCCCCceEcceEEEEEEeccccccCccceEEEEcCCCEEEE
Confidence 34568889999999999999999999999999997654433444555545444322 12344556678889999
Q ss_pred EecCCCceEEEEEcCCCCh-HHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcceE
Q 010200 294 LPIGDNFSNIVWTMNPKDA-SDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVV 372 (515)
Q Consensus 294 ~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 372 (515)
+|..++..++++.+..... ......+. +.+.+.|. +|.+. ..+.++.. + .
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~-~~~~~-------~~~~~~~~----~----------~--- 250 (373)
T PRK06753 200 VPLLNNQAYWFITINAKERDPKYSSFGK----PHLQAYFN-HYPNE-------VREILDKQ----S----------E--- 250 (373)
T ss_pred EEcCCCeEEEEEEeccccCCcccccccH----HHHHHHHh-cCChH-------HHHHHHhC----C----------c---
Confidence 9999887777666543221 11112222 23334343 34322 11111110 0 0
Q ss_pred Eeccceeeecccc-ccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHh
Q 010200 373 KLASERMVFPLSL-KHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAER 451 (515)
Q Consensus 373 ~~~~~~~~~p~~~-~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r 451 (515)
.....+++.. .+.++|..++|+|||||||.|+|+.|||+|+||+||..|++.|... + ...+|+.|++.|
T Consensus 251 ---~~~~~~~~~~~~~~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L~~~-----~--~~~al~~Y~~~r 320 (373)
T PRK06753 251 ---TGILHHDIYDLKPLKSFVYGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCLNAY-----D--FEKALQRYDKIR 320 (373)
T ss_pred ---ccceeeccccccccccccCCCEEEEecccccCCCCcCccHHHHHHHHHHHHHHhhhc-----c--HHHHHHHHHHHh
Confidence 0000122211 2357788999999999999999999999999999999999999642 3 378999999999
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcc
Q 010200 452 KPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQ 488 (515)
Q Consensus 452 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~ 488 (515)
++++..++..++.+.++++..+++...+|+.+++.+.
T Consensus 321 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~~ 357 (373)
T PRK06753 321 VKHTAKVIKRSRKIGKIAQIESKLLVALRNRVMKRMP 357 (373)
T ss_pred hHHHHHHHHHHHHHhHHHhcCCchHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999998874
No 28
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=100.00 E-value=2.1e-40 Score=352.04 Aligned_cols=369 Identities=20% Similarity=0.276 Sum_probs=268.8
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhh
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ 132 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~ 132 (515)
+..+||+||||||+||++|+.|++. |++|+||||.+.+ ...+++..++++++++|+++|+++.+.+
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~----G~~v~viE~~~~~----------~~~~ra~~l~~~~~~~l~~lGl~~~l~~ 86 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQ----GVPVVLLDDDDTL----------STGSRAICFAKRSLEIFDRLGCGERMVD 86 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhC----CCcEEEEeCCCCC----------CCCCeEEEEcHHHHHHHHHcCCcHHHHh
Confidence 3568999999999999999999996 9999999999865 2446789999999999999999999887
Q ss_pred hhccccceEEEEeCCCccceeeecccC--CCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccC
Q 010200 133 HRHAYFDKMQVWDYTGLGYTKYNARDV--NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD 210 (515)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~ 210 (515)
... ......++.... ....+..... ......+.+.+..+++.|.+.+.+.++++++++++|++++.
T Consensus 87 ~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~---------- 154 (547)
T PRK08132 87 KGV-SWNVGKVFLRDE-EVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQ---------- 154 (547)
T ss_pred hCc-eeeceeEEeCCC-eEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEE----------
Confidence 654 333233333221 1222221111 11122355889999999999998876699999999999976
Q ss_pred CCCCcccccccCCeeEEEc--CCCc-EEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEe-
Q 010200 211 STPSATTLFTKGHLAKLDL--SDGT-SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRF- 285 (515)
Q Consensus 211 ~~~~~~~~~~~~~~~~v~~--~~g~-~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~- 285 (515)
+...+++.+ .+|. ++++|+||+|||.+|.||+.+++...+..+...++...+....+. ...+.++
T Consensus 155 ----------~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~ 224 (547)
T PRK08132 155 ----------HDDGVTLTVETPDGPYTLEADWVIACDGARSPLREMLGLEFEGRTFEDRFLIADVKMKADFPTERWFWFD 224 (547)
T ss_pred ----------cCCEEEEEEECCCCcEEEEeCEEEECCCCCcHHHHHcCCCCCCccccceEEEEEEEecCCCCCeeeEEEe
Confidence 233455443 4554 799999999999999999999988777777666666655544332 2223333
Q ss_pred ---cCCCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCcccccc
Q 010200 286 ---LPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAK 362 (515)
Q Consensus 286 ---~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (515)
.++..+++.|.+++.+.+.+........ ....+.+.+...+.+.+. .. .
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~----~~-~---------------------- 276 (547)
T PRK08132 225 PPFHPGQSVLLHRQPDNVWRIDFQLGWDADP-EAEKKPENVIPRVRALLG----ED-V---------------------- 276 (547)
T ss_pred ccCCCCcEEEEEeCCCCeEEEEEecCCCCCc-hhhcCHHHHHHHHHHHcC----CC-C----------------------
Confidence 2344566667666666655544322111 112345666666666442 00 0
Q ss_pred ccccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHH
Q 010200 363 ECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEAS 442 (515)
Q Consensus 363 ~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~ 442 (515)
+ .. ......|++..+.+++|..|||+|+|||||.++|+.|||+|+||+||.+|++.|...++.. ....
T Consensus 277 -----~---~~-~~~~~~~~~~~~~a~~~~~gRV~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g~---~~~~ 344 (547)
T PRK08132 277 -----P---FE-LEWVSVYTFQCRRMDRFRHGRVLFAGDAAHQVSPFGARGANSGIQDADNLAWKLALVLRGR---APDS 344 (547)
T ss_pred -----C---ee-EEEEEeeeeeeeeecccccccEEEEecccccCCCcccccccchHHHHHHHHHHHHHHHcCC---CcHH
Confidence 0 00 0111236666667889999999999999999999999999999999999999999887643 2478
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHH
Q 010200 443 LLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNI 497 (515)
Q Consensus 443 al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 497 (515)
+|+.|+++|+++++.++..+..+..+++..++....+|+..+..+...+.+++.+
T Consensus 345 lL~~Ye~eR~p~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 399 (547)
T PRK08132 345 LLDSYASEREFAADENIRNSTRSTDFITPKSPVSRLFRDAVLRLARDHPFARRLV 399 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhcccHHHHHHH
Confidence 9999999999999999999999999988888888899999999998888777665
No 29
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=100.00 E-value=2.1e-40 Score=353.94 Aligned_cols=354 Identities=20% Similarity=0.302 Sum_probs=254.6
Q ss_pred CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhh
Q 010200 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ 131 (515)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~ 131 (515)
++.++||+||||||+||++|+.|++. .|++|+||||.+.+ ...+++.+++++++++|+.+|+++.+.
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~---~Gi~v~IiE~~~~~----------~~~grA~gl~prtleiL~~lGl~d~l~ 95 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAF---PDITTRIVERKPGR----------LELGQADGIACRTMEMFQAFGFAERIL 95 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcC---CCCcEEEEEcCCCC----------CCCCeeeEEChHHHHHHHhccchHHHH
Confidence 34579999999999999999999993 28999999999865 344678999999999999999999998
Q ss_pred hhhccccceEEEEeCCCcc--cee----ee-cccCCCCcceEEechHHHHHHHHHHHhcCCC-ceEEcCCeeEEEEeCCC
Q 010200 132 QHRHAYFDKMQVWDYTGLG--YTK----YN-ARDVNKEILGCVVENKVLHSSLLSCMQNTEF-QKTIYPSRLTSMALLPS 203 (515)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~--~~~----~~-~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~-v~i~~~~~v~~i~~~~~ 203 (515)
+... ....+.+|...+.. .+. +. ............++|..+++.|++.+.+.|. +++++++++++++.
T Consensus 96 ~~g~-~~~~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~--- 171 (634)
T PRK08294 96 KEAY-WINETAFWKPDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEV--- 171 (634)
T ss_pred hhcc-cccceEEEcCCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEE---
Confidence 8766 66677777643211 110 00 0011111223578999999999999988762 57899999999976
Q ss_pred CCCcccCCCCCcccccccCCeeEEEcC------CC--cEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEee
Q 010200 204 SSSISVDSTPSATTLFTKGHLAKLDLS------DG--TSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHN 275 (515)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~v~~~------~g--~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~ 275 (515)
+++ ....++++++ +| ++++||+||+|||++|.||+++|+...+..++..+....+...
T Consensus 172 ------~~~--------~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~~v~dv~~~ 237 (634)
T PRK08294 172 ------DEE--------GEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAWGVMDVLAV 237 (634)
T ss_pred ------CCC--------CCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceEEEEEEEEc
Confidence 110 1234666664 35 4899999999999999999999988877777766655554432
Q ss_pred cCC---ceEE-EEecCCCcEEEEecCCCc-eEEEEEcCC---CChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcc
Q 010200 276 KEN---YCAW-QRFLPAGPIALLPIGDNF-SNIVWTMNP---KDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSV 347 (515)
Q Consensus 276 ~~~---~~~~-~~~~~~g~~~~~p~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (515)
.+. .... ....+++.+.++|.+++. +++++.... .........+.+++.+.+++.+. .|...
T Consensus 238 ~~~p~~~~~~~~~~~~~g~~~~~P~~~g~~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~-p~~~~--------- 307 (634)
T PRK08294 238 TDFPDIRLKCAIQSASEGSILLIPREGGYLVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILH-PYTLD--------- 307 (634)
T ss_pred cCCCCcceEEEEecCCCceEEEEECCCCeEEEEEEecCcCCCccccccccCCHHHHHHHHHHhcC-CCCCc---------
Confidence 221 1111 122467899999998874 555444321 11122345677888888777543 11100
Q ss_pred cchhccccCccccccccccCCcceEEeccceeeecccccccccc----------ccCcEEEEcccccccCCccccchhhc
Q 010200 348 DMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNY----------VSKRVVLIGDAAHTVHPLAGQGVNLG 417 (515)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~----------~~~~v~lvGDAAh~~~P~~G~G~n~a 417 (515)
......+..|++..+.+++| ..|||+|+|||||+++|..|||+|++
T Consensus 308 ------------------------~~~v~w~s~y~i~~r~a~~f~~~~~~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~g 363 (634)
T PRK08294 308 ------------------------VKEVAWWSVYEVGQRLTDRFDDVPAEEAGTRLPRVFIAGDACHTHSAKAGQGMNVS 363 (634)
T ss_pred ------------------------eeEEeEEecccccceehhhcccccccccccccCCEEEEecCccCCCCccccchhhH
Confidence 01112222355555555444 35899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCC
Q 010200 418 FGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDF 473 (515)
Q Consensus 418 l~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~ 473 (515)
|+||.+|++.|...++.. ...++|+.|+++|++.++.+++.++.+.++|+...
T Consensus 364 iqDA~nLawkLa~vl~g~---a~~~lL~tYe~ERrp~a~~li~~~~~~~~l~~~~~ 416 (634)
T PRK08294 364 MQDGFNLGWKLAAVLSGR---SPPELLHTYSAERQAIAQELIDFDREWSTMMAAPP 416 (634)
T ss_pred HHHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 999999999999988643 34789999999999999999999999999997653
No 30
>PRK06847 hypothetical protein; Provisional
Probab=100.00 E-value=1.4e-40 Score=338.48 Aligned_cols=364 Identities=20% Similarity=0.217 Sum_probs=260.6
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (515)
+..||+||||||+||++|+.|++. |++|+|||+.+.+. ..+.++.++++++++|+.+|+.+.+.+.
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~----g~~v~v~E~~~~~~----------~~g~g~~l~~~~~~~l~~~gl~~~~~~~ 68 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRA----GIAVDLVEIDPEWR----------VYGAGITLQGNALRALRELGVLDECLEA 68 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhC----CCCEEEEecCCCCc----------cCCceeeecHHHHHHHHHcCCHHHHHHh
Confidence 457999999999999999999996 99999999998763 2355899999999999999999988876
Q ss_pred hccccceEEEEeCCCccceeeecccCC--CCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCC
Q 010200 134 RHAYFDKMQVWDYTGLGYTKYNARDVN--KEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS 211 (515)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~ 211 (515)
.. +...+.+++..+.....++..... .......+.|..|.+.|.+.+.+.| ++|+++++|++++.
T Consensus 69 ~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g-v~v~~~~~v~~i~~----------- 135 (375)
T PRK06847 69 GF-GFDGVDLFDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAG-ADVRLGTTVTAIEQ----------- 135 (375)
T ss_pred CC-CccceEEECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhC-CEEEeCCEEEEEEE-----------
Confidence 65 666777776555433333211111 1122356889999999999998887 99999999999976
Q ss_pred CCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhc-CCccccccCCceEEEEEEEeecCCceEEEEecCCCc
Q 010200 212 TPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELA-GFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGP 290 (515)
Q Consensus 212 ~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 290 (515)
.+..+++.+.+|+++.+|+||+|||.+|.+|+.+ +........+...+.+.++..........+..+++.
T Consensus 136 ---------~~~~~~v~~~~g~~~~ad~vI~AdG~~s~~r~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (375)
T PRK06847 136 ---------DDDGVTVTFSDGTTGRYDLVVGADGLYSKVRSLVFPDEPEPEYTGQGVWRAVLPRPAEVDRSLMYLGPTTK 206 (375)
T ss_pred ---------cCCEEEEEEcCCCEEEcCEEEECcCCCcchhhHhcCCCCCceeccceEEEEEecCCCCccceEEEeCCCcE
Confidence 3355788888998999999999999999999988 332222333444444445443332333444566778
Q ss_pred EEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcc
Q 010200 291 IALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPR 370 (515)
Q Consensus 291 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 370 (515)
+.++|..++...+++....+.. ...+.+.+.+.+.+.+. .|.++.. ...... +
T Consensus 207 ~~~~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~-~---------------- 259 (375)
T PRK06847 207 AGVVPLSEDLMYLFVTEPRPDN---PRIEPDTLAALLRELLA-PFGGPVL------QELREQ-I---------------- 259 (375)
T ss_pred EEEEcCCCCeEEEEEeccCccc---ccCChHHHHHHHHHHHh-hcCchHH------HHHHHh-c----------------
Confidence 8889998776555544333221 12345556666666554 4443100 001100 0
Q ss_pred eEEeccceeeecccccc-ccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHH
Q 010200 371 VVKLASERMVFPLSLKH-ANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 449 (515)
Q Consensus 371 ~~~~~~~~~~~p~~~~~-~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~ 449 (515)
........+|+.... ..+|..++|+|||||||+|+|+.|||+|+||+||..|++.|.+. .+ ...+|+.|++
T Consensus 260 --~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAaH~~~P~~GqG~n~aieDA~~La~~L~~~----~~--~~~al~~Y~~ 331 (375)
T PRK06847 260 --TDDAQVVYRPLETLLVPAPWHRGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELARH----DS--LEAALQAYYA 331 (375)
T ss_pred --CCccceeeccHhhccCCCCccCCeEEEEechhccCCCCccccHHHHHHHHHHHHHHHhhC----Cc--HHHHHHHHHH
Confidence 000011123444332 45688999999999999999999999999999999999999762 22 3789999999
Q ss_pred HhhHHHHHHHHHHHHHHHhhcCCCC---hHHHHHHHHHHhcc
Q 010200 450 ERKPANIVMMAVLDGFQKAYSVDFG---PLNILRAAAFHGAQ 488 (515)
Q Consensus 450 ~r~~~~~~~~~~s~~~~~~~~~~~~---~~~~~r~~~~~~~~ 488 (515)
+|++++..++..++.+...+....+ ....+|++++.++.
T Consensus 332 ~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (375)
T PRK06847 332 RRWERCRMVVEASARIGRIEIEGGDKAEHAGLMRESMELLAQ 373 (375)
T ss_pred HHHHHHHHHHHHHHHhhheecCCCCccchHHHHHHHHHHhcC
Confidence 9999999999999999999876655 77788888887764
No 31
>PRK06184 hypothetical protein; Provisional
Probab=100.00 E-value=9.9e-41 Score=351.21 Aligned_cols=340 Identities=24% Similarity=0.333 Sum_probs=249.7
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (515)
..+||+||||||+||++|+.|+++ |++|+||||.+.+ ...+++.+++++++++|+.+|+++.+.+.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~----Gi~v~viE~~~~~----------~~~~ra~~l~~~~~e~l~~lGl~~~l~~~ 67 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARR----GVSFRLIEKAPEP----------FPGSRGKGIQPRTQEVFDDLGVLDRVVAA 67 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC----CCcEEEEeCCCCC----------CcCccceeecHHHHHHHHHcCcHHHHHhc
Confidence 358999999999999999999996 9999999999876 23456889999999999999999999886
Q ss_pred hccccceEEEEeCCCccc-eeeecc----cCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcc
Q 010200 134 RHAYFDKMQVWDYTGLGY-TKYNAR----DVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSIS 208 (515)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~ 208 (515)
.. ....+.++...+... ..+... ........+.+++..++..|.+.+.+.| ++|+++++|++++.
T Consensus 68 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~g-v~i~~~~~v~~i~~-------- 137 (502)
T PRK06184 68 GG-LYPPMRIYRDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELG-HRVEFGCELVGFEQ-------- 137 (502)
T ss_pred Cc-cccceeEEeCCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCC-CEEEeCcEEEEEEE--------
Confidence 65 445555555333211 111100 0011123467899999999999999887 99999999999976
Q ss_pred cCCCCCcccccccCCeeEEEc---CCCcEEEeeEEEEecCCCchhhhhcCCccccccCCc-eEEEEEEEeecCCceEEEE
Q 010200 209 VDSTPSATTLFTKGHLAKLDL---SDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQ-NAIICTVEHNKENYCAWQR 284 (515)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~v~~---~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 284 (515)
+.+.+++++ .++++++||+||+|||++|.||+.+++...+..+.. .++.+.+.........+..
T Consensus 138 ------------~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (502)
T PRK06184 138 ------------DADGVTARVAGPAGEETVRARYLVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTGLDRDAWHQ 205 (502)
T ss_pred ------------cCCcEEEEEEeCCCeEEEEeCEEEECCCCchHHHHhCCCCcccCcCCCceEEEEEEEeecCCCcceEE
Confidence 334566666 556689999999999999999999998887777765 6666665544333334444
Q ss_pred ec-CC-CcEEEEecCCC-ceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccc
Q 010200 285 FL-PA-GPIALLPIGDN-FSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSA 361 (515)
Q Consensus 285 ~~-~~-g~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (515)
+. +. +.+.++|++++ .+.+.+...... ....+.+.+.+.+...+. +.+.
T Consensus 206 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~--~~~~----------------------- 257 (502)
T PRK06184 206 WPDGDMGMIALCPLPGTDLFQIQAPLPPGG---EPDLSADGLTALLAERTG--RTDI----------------------- 257 (502)
T ss_pred ccCCCCcEEEEEEccCCCeEEEEEEcCCCc---cCCCCHHHHHHHHHHhcC--CCCc-----------------------
Confidence 43 33 67888898765 444445443321 123456666666665432 0000
Q ss_pred cccccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchH
Q 010200 362 KECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEA 441 (515)
Q Consensus 362 ~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~ 441 (515)
..........|++..+.+++|..|||+|+|||||.++|+.|||+|+||+||.+|++.|...++. . ..
T Consensus 258 ---------~~~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g--~--~~ 324 (502)
T PRK06184 258 ---------RLHSVTWASAFRMNARLADRYRVGRVFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLAAVLAG--A--PE 324 (502)
T ss_pred ---------ceeeeeeeeccccceeEhhhhcCCcEEEeccccccCCCcccccccchHHHHHHHHHHHHHHHcC--C--CH
Confidence 0001112223666666678899999999999999999999999999999999999999987764 2 37
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Q 010200 442 SLLKKYEAERKPANIVMMAVLDGFQKAYS 470 (515)
Q Consensus 442 ~al~~Y~~~r~~~~~~~~~~s~~~~~~~~ 470 (515)
.+|+.|+++|++++..++..++.+...+.
T Consensus 325 ~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~ 353 (502)
T PRK06184 325 ALLDTYEEERRPVAAAVLGLSTELLDAIK 353 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999998887754
No 32
>PLN02985 squalene monooxygenase
Probab=100.00 E-value=9.4e-41 Score=348.21 Aligned_cols=399 Identities=16% Similarity=0.133 Sum_probs=270.5
Q ss_pred CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhh
Q 010200 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ 131 (515)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~ 131 (515)
....+||+||||||+|+++|+.|++. |++|+|+||..... ....++.+++++.++|+++|+++.+.
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~----G~~V~vlEr~~~~~----------~~~~g~~L~p~g~~~L~~LGl~d~l~ 105 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKD----GRRVHVIERDLREP----------ERMMGEFMQPGGRFMLSKLGLEDCLE 105 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHc----CCeEEEEECcCCCC----------ccccccccCchHHHHHHHcCCcchhh
Confidence 44678999999999999999999996 99999999986432 22347889999999999999999988
Q ss_pred hhhccccceEEEEeCCCccceeeeccc--CCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCccc
Q 010200 132 QHRHAYFDKMQVWDYTGLGYTKYNARD--VNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISV 209 (515)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~ 209 (515)
.....+..++.++.........++... ......++.++|.+|.+.|++++.+.++++++.+ +++++..+
T Consensus 106 ~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~-------- 176 (514)
T PLN02985 106 GIDAQKATGMAVYKDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEE-------- 176 (514)
T ss_pred hccCcccccEEEEECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEc--------
Confidence 765556777777764332233333211 1123446789999999999999988877998876 67776540
Q ss_pred CCCCCcccccccCCeeEEEcCCCc--EEEeeEEEEecCCCchhhhhcCCcccc-ccCCceEEEEEEEeecCCceEEEEec
Q 010200 210 DSTPSATTLFTKGHLAKLDLSDGT--SLYAKLVVGADGGKSRVRELAGFKTTG-WSYSQNAIICTVEHNKENYCAWQRFL 286 (515)
Q Consensus 210 ~~~~~~~~~~~~~~~~~v~~~~g~--~~~ad~vV~AdG~~S~vr~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (515)
++ ...++++...+|+ ++.||+||+|||.+|.+|+.++..... ..+...++....... .....+..+.
T Consensus 177 ----~~-----~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~vR~~l~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~~ 246 (514)
T PLN02985 177 ----KG-----VIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLNDNNAEVLSYQVGYISKNCRLE-EPEKLHLIMS 246 (514)
T ss_pred ----CC-----EEEEEEEEcCCCCEEEEECCEEEECCCCchHHHHHhccCCCcceeEeEEEEEccccCC-CCCcceEEcC
Confidence 00 1123555555665 467999999999999999999654322 222221211111111 1233344556
Q ss_pred CCCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCcccccccccc
Q 010200 287 PAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFE 366 (515)
Q Consensus 287 ~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (515)
+++++.++|++++..++.+..+.+... ..+..++...+.+...+.+ .+.+...+...
T Consensus 247 ~~~~~l~ypi~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~-----------p~~l~~~f~~~--------- 303 (514)
T PLN02985 247 KPSFTMLYQISSTDVRCVFEVLPDNIP---SIANGEMSTFVKNTIAPQV-----------PPKLRKIFLKG--------- 303 (514)
T ss_pred CCceEEEEEeCCCeEEEEEEEeCCCCC---CcChhhHHHHHHhcccccc-----------CHHHHHHHHhh---------
Confidence 778999999998888887777544322 1222333333332111000 01111100000
Q ss_pred CCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHH
Q 010200 367 VPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKK 446 (515)
Q Consensus 367 i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~ 446 (515)
+.+ ......+|....+...|..++++|||||||+++|++|||+|+|++||..|++.|.....-.+......+|+.
T Consensus 304 ~~~-----~~~~~~~p~~~l~~~~~~~~~vvLiGDAaH~~~P~~GQGmn~AleDA~vLa~lL~~~~~~~~~~~~~~aL~~ 378 (514)
T PLN02985 304 IDE-----GAHIKVVPTKRMSATLSDKKGVIVLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNANKVSEVIKS 378 (514)
T ss_pred ccc-----ccceeecCcccccccccCCCCEEEEecccccCCCCccccHhHHHHHHHHHHHHhhhcccccchhHHHHHHHH
Confidence 000 000112333332334555789999999999999999999999999999999999874211111123689999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhc-CCCChHHHHHHHHHHhcccChhHHHHHHHHhhcCCCCCCCC
Q 010200 447 YEAERKPANIVMMAVLDGFQKAYS-VDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLPL 511 (515)
Q Consensus 447 Y~~~r~~~~~~~~~~s~~~~~~~~-~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 511 (515)
|++.|++++..++..+..++++|. .++..+..+|+..|+.+..=+...+-.+..++|+..+|+.+
T Consensus 379 y~~~Rk~r~~~i~~la~al~~~f~a~~~~~~~~l~~~~f~y~~~g~~~~~~~~~ll~~~~~~p~~l 444 (514)
T PLN02985 379 FYDIRKPMSATVNTLGNAFSQVLVASTDEAKEAMRQGCYDYLCSGGFRTSGMMALLGGMNPRPLSL 444 (514)
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCccccccHHHHcCCCCCcHHH
Confidence 999999999999999999999996 45666899999999888776667788899999999998753
No 33
>PRK06475 salicylate hydroxylase; Provisional
Probab=100.00 E-value=1.1e-40 Score=341.45 Aligned_cols=353 Identities=17% Similarity=0.181 Sum_probs=244.0
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (515)
.+|+||||||+||++|+.|++. |++|+||||.+.+. ..++++.++++++++|+++|+++.+.+...
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~----G~~V~i~E~~~~~~----------~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~ 68 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAAR----GWAVTIIEKAQELS----------EVGAGLQLAPNAMRHLERLGVADRLSGTGV 68 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCccC----------cCCccceeChhHHHHHHHCCChHHHhhccc
Confidence 5799999999999999999996 99999999988663 345689999999999999999999987665
Q ss_pred cccceEEEEeCCCccce-eeecccC---CCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCC
Q 010200 136 AYFDKMQVWDYTGLGYT-KYNARDV---NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS 211 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~ 211 (515)
....+.++++...... ....... ......+.++|.+|.+.|.+.+.+.++++++++++|++++.
T Consensus 69 -~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~----------- 136 (400)
T PRK06475 69 -TPKALYLMDGRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQ----------- 136 (400)
T ss_pred -CcceEEEecCCCcceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEec-----------
Confidence 3345555543222111 1111000 01112246899999999999998764599999999999975
Q ss_pred CCCcccccccCCeeEEEc---CCCcEEEeeEEEEecCCCchhhhhcCCccccccC-CceEEEEEEEeecC----------
Q 010200 212 TPSATTLFTKGHLAKLDL---SDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSY-SQNAIICTVEHNKE---------- 277 (515)
Q Consensus 212 ~~~~~~~~~~~~~~~v~~---~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~-~~~~~~~~~~~~~~---------- 277 (515)
....+++++ .+++++.+|+||+|||.+|.||+.++.. ...| +..++.+.++....
T Consensus 137 ---------~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~vR~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 205 (400)
T PRK06475 137 ---------TGNSITATIIRTNSVETVSAAYLIACDGVWSMLRAKAGFS--KARFSGHIAWRTTLAADALPASFLSAMPE 205 (400)
T ss_pred ---------CCCceEEEEEeCCCCcEEecCEEEECCCccHhHHhhcCCC--CCCcCCceEEEEEeehhhcchhhhhhccc
Confidence 334466665 3345799999999999999999998652 2334 45555555543321
Q ss_pred CceEEEEecCCCcEEEEecCCCceEEEEEcC-CCChHH-hh-cCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccc
Q 010200 278 NYCAWQRFLPAGPIALLPIGDNFSNIVWTMN-PKDASD-CK-SMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFR 354 (515)
Q Consensus 278 ~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~-~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (515)
......++.+++++.++|+.++....++... .+.... .. ..+. +.+.+.+. +|.+... +.
T Consensus 206 ~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~-~~~~~~~-------~~----- 268 (400)
T PRK06475 206 HKAVSAWLGNKAHFIAYPVKGGKFFNFVAITGGENPGEVWSKTGDK----AHLKSIYA-DWNKPVL-------QI----- 268 (400)
T ss_pred CCceEEEEcCCCEEEEEEccCCcEEEEEEEEcCCCCcccCCCCCCH----HHHHHHhc-CCChHHH-------HH-----
Confidence 1223445678899999999877543333322 211111 11 1122 23334343 4544311 11
Q ss_pred cCccccccccccCCcceEEeccceeeecccccccccc-ccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHh
Q 010200 355 GDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNY-VSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIA 433 (515)
Q Consensus 355 ~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~-~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~ 433 (515)
++.......||+......+| ..|||+|||||||+|+|+.|||+|+||+||..|+++|..
T Consensus 269 -----------------i~~~~~~~~~~l~~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~--- 328 (400)
T PRK06475 269 -----------------LAAIDEWTYWPLFEMADAQFVGPDRTIFLGDASHAVTPFAAQGAAMAIEDAAALAEALDS--- 328 (400)
T ss_pred -----------------HhcCCceeECcCcccCCCcceecCCEEEEecccccCCchhhhhHHHHHHHHHHHHHHHhc---
Confidence 11112233467766555555 579999999999999999999999999999999999963
Q ss_pred cCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhc
Q 010200 434 VGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGA 487 (515)
Q Consensus 434 ~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~ 487 (515)
.++ ..+|+.|++.|++++..++..++. ...+....++....|+..+...
T Consensus 329 --~~~--~~aL~~Ye~~R~~r~~~~~~~s~~-~~~~~~~~~~~~~~r~~~~~~~ 377 (400)
T PRK06475 329 --DDQ--SAGLKRFDSVRKERIAAVAKRGQL-NRFAYHATGIFALGRNMLFAIR 377 (400)
T ss_pred --CCH--HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCCHHHHHHHHHHhhc
Confidence 133 689999999999999999999974 4444445567788899888655
No 34
>PRK07190 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-39 Score=339.03 Aligned_cols=338 Identities=18% Similarity=0.201 Sum_probs=250.2
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (515)
..+||+||||||+||++|+.|++. |++|+|+||.+.+ ...+++..++++++++|+.+|+++.+...
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~----Gi~V~llEr~~~~----------~~~gra~~l~~~tle~L~~lGl~~~l~~~ 69 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLC----GLNTVIVDKSDGP----------LEVGRADALNARTLQLLELVDLFDELYPL 69 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHc----CCCEEEEeCCCcc----------cccccceEeCHHHHHHHHhcChHHHHHhh
Confidence 458999999999999999999996 9999999999876 23467889999999999999999998775
Q ss_pred hccccceEEEEeCCCccceeee-cccC--CCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccC
Q 010200 134 RHAYFDKMQVWDYTGLGYTKYN-ARDV--NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD 210 (515)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~ 210 (515)
.. +.....+|........... .... ......+.+.+..++..|.+.+.+.| ++|+++++|++++.
T Consensus 70 ~~-~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~G-v~v~~~~~v~~l~~---------- 137 (487)
T PRK07190 70 GK-PCNTSSVWANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAG-AAVKRNTSVVNIEL---------- 137 (487)
T ss_pred Cc-cceeEEEecCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCC-CEEEeCCEEEEEEE----------
Confidence 54 4444455543221100000 0001 11223466889999999999999987 99999999999987
Q ss_pred CCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeec--CC-ceEEEEecC
Q 010200 211 STPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--EN-YCAWQRFLP 287 (515)
Q Consensus 211 ~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~ 287 (515)
+.+.+.+.+.+|++++|++||+|||.+|.+|+.+|++..+..+...+....+.... +. ........+
T Consensus 138 ----------~~~~v~v~~~~g~~v~a~~vVgADG~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 207 (487)
T PRK07190 138 ----------NQAGCLTTLSNGERIQSRYVIGADGSRSFVRNHFNVPFEIIRPQIIWAVIDGVIDTDFPKVPEIIVFQAE 207 (487)
T ss_pred ----------cCCeeEEEECCCcEEEeCEEEECCCCCHHHHHHcCCCccccccceeEEEEEEEEccCCCCCcceEEEEcC
Confidence 33456777778889999999999999999999999887766655444444333332 21 122223356
Q ss_pred CCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccC
Q 010200 288 AGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEV 367 (515)
Q Consensus 288 ~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 367 (515)
.+.++++|.+++...++.... ....+.+++.+.+...+. ++. +
T Consensus 208 ~g~~~~~p~~~~~~r~~~~~~------~~~~t~~~~~~~l~~~~~-~~~------------------------------~ 250 (487)
T PRK07190 208 TSDVAWIPREGEIDRFYVRMD------TKDFTLEQAIAKINHAMQ-PHR------------------------------L 250 (487)
T ss_pred CCCEEEEECCCCEEEEEEEcC------CCCCCHHHHHHHHHHhcC-CCC------------------------------C
Confidence 788999999876655433321 123566777777766442 100 0
Q ss_pred CcceEEeccceeeeccccccccccc-cCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHH
Q 010200 368 PPRVVKLASERMVFPLSLKHANNYV-SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKK 446 (515)
Q Consensus 368 ~~~~~~~~~~~~~~p~~~~~~~~~~-~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~ 446 (515)
. .........|++..+.+++|. .|||+|+|||||.++|+.|||+|++|+||.+|++.|...++.. .....|+.
T Consensus 251 ~---~~~~~w~s~~~~~~r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~giqDA~nL~wkLa~v~~g~---a~~~lLdt 324 (487)
T PRK07190 251 G---FKEIVWFSQFSVKESVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIHHG---ASPELLQS 324 (487)
T ss_pred c---eEEEEEEEEeeeCcEehhhcCcCCcEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcCC---CcHHHHHH
Confidence 0 111223345888888999996 7999999999999999999999999999999999999887643 24789999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhc
Q 010200 447 YEAERKPANIVMMAVLDGFQKAYS 470 (515)
Q Consensus 447 Y~~~r~~~~~~~~~~s~~~~~~~~ 470 (515)
|+++|++.+..++..++.+.++..
T Consensus 325 Y~~eR~p~a~~vl~~t~~~~~~~~ 348 (487)
T PRK07190 325 YEAERKPVAQGVIETSGELVRSTK 348 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999998888653
No 35
>PRK08163 salicylate hydroxylase; Provisional
Probab=100.00 E-value=4.2e-40 Score=337.37 Aligned_cols=360 Identities=18% Similarity=0.242 Sum_probs=253.6
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (515)
.+.||+||||||+||++|+.|++. |++|+||||.+.++ ..++++.+++++.++|+.+|+++.+.+.
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~----g~~v~v~Er~~~~~----------~~g~gi~l~~~~~~~l~~lg~~~~~~~~ 68 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQ----GIKVKLLEQAAEIG----------EIGAGIQLGPNAFSALDALGVGEAARQR 68 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhC----CCcEEEEeeCcccc----------cccceeeeCchHHHHHHHcCChHHHHhh
Confidence 458999999999999999999996 99999999998763 2355899999999999999999988776
Q ss_pred hccccceEEEEeCC-CccceeeecccC---CCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCccc
Q 010200 134 RHAYFDKMQVWDYT-GLGYTKYNARDV---NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISV 209 (515)
Q Consensus 134 ~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~ 209 (515)
.. ....+.+++.. +.....++.... ......+.++|.+|.+.|.+.+.+.++++++++++|++++.
T Consensus 69 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~--------- 138 (396)
T PRK08163 69 AV-FTDHLTMMDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQ--------- 138 (396)
T ss_pred cc-CCcceEEEeCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEec---------
Confidence 54 55667776542 222222221110 11122357899999999999998876699999999999975
Q ss_pred CCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC-----ceEEEE
Q 010200 210 DSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-----YCAWQR 284 (515)
Q Consensus 210 ~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 284 (515)
.++.+++.+.+|+++.+|+||+|||.+|.+|+.+... .....+...+.+.++..... ......
T Consensus 139 -----------~~~~v~v~~~~g~~~~ad~vV~AdG~~S~~r~~~~g~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (396)
T PRK08163 139 -----------DGDGVTVFDQQGNRWTGDALIGCDGVKSVVRQSLVGD-APRVTGHVVYRAVIDVDDMPEDLRINAPVLW 206 (396)
T ss_pred -----------CCCceEEEEcCCCEEecCEEEECCCcChHHHhhccCC-CCCccccEEEEEEEeHHHCcchhccCccEEE
Confidence 3355888888998999999999999999999998322 22334455555666543211 122334
Q ss_pred ecCCCcEEEEecCCCc-eEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccc
Q 010200 285 FLPAGPIALLPIGDNF-SNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKE 363 (515)
Q Consensus 285 ~~~~g~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (515)
..++++++++|+.++. ++++|............. ......+.+.|. +|.+.. .+.+..
T Consensus 207 ~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~-~~~~~~-------~~~~~~----------- 265 (396)
T PRK08163 207 AGPHCHLVHYPLRGGEQYNLVVTFHSREQEEWGVK--DGSKEEVLSYFE-GIHPRP-------RQMLDK----------- 265 (396)
T ss_pred EcCCceEEEEEecCCeEEEEEEEECCCCCcccccC--CCCHHHHHHHHc-CCChHH-------HHHHhc-----------
Confidence 4567788899997764 455665543322111111 111233344444 343321 111110
Q ss_pred cccCCcceEEeccceeeecccc-ccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHH
Q 010200 364 CFEVPPRVVKLASERMVFPLSL-KHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEAS 442 (515)
Q Consensus 364 ~~~i~~~~~~~~~~~~~~p~~~-~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~ 442 (515)
......+++.. .+.++|..+||+|+|||||+|+|+.|||+|+||+||..|+++|... ..++ ..
T Consensus 266 -----------~~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~---~~~~--~~ 329 (396)
T PRK08163 266 -----------PTSWKRWATADREPVAKWSTGRVTLLGDAAHPMTQYMAQGACMALEDAVTLGKALEGC---DGDA--EA 329 (396)
T ss_pred -----------CCceeEccccCCCcccccccCcEEEEecccccCCcchhccHHHHHHHHHHHHHHHHhc---cccH--HH
Confidence 00011122211 2457888999999999999999999999999999999999999752 2233 78
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhc
Q 010200 443 LLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGA 487 (515)
Q Consensus 443 al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~ 487 (515)
+|+.|+++|++++..++..++.+..+++.. .....+|+..+...
T Consensus 330 al~~y~~~R~~r~~~~~~~s~~~~~~~~~~-~~~~~~r~~~~~~~ 373 (396)
T PRK08163 330 AFALYESVRIPRTARVVLSAREMGRIYHAK-GVERQVRNLLWKGR 373 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhCCC-CHHHHHHHHHhhcc
Confidence 999999999999999999999999999876 67788888877665
No 36
>PRK05868 hypothetical protein; Validated
Probab=100.00 E-value=1.3e-39 Score=329.24 Aligned_cols=358 Identities=17% Similarity=0.158 Sum_probs=248.8
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (515)
.||+||||||+||++|+.|++. |++|+||||.+.++ ..+.++.+.++++++|+++|+++.+.+...
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~----G~~v~viE~~~~~~----------~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~ 67 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRH----GYSVTMVERHPGLR----------PGGQAIDVRGPALDVLERMGLLAAAQEHKT 67 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCCC----------CCceeeeeCchHHHHHHhcCCHHHHHhhcc
Confidence 3899999999999999999996 99999999998773 234578899999999999999998877554
Q ss_pred cccceEEEEeCCCccceeeeccc-C--CCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCC
Q 010200 136 AYFDKMQVWDYTGLGYTKYNARD-V--NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST 212 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~ 212 (515)
....+.+++..+.......... . ......+.+.|.+|.+.|.+.+. .+ ++++++++|++++.
T Consensus 68 -~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~-~~-v~i~~~~~v~~i~~------------ 132 (372)
T PRK05868 68 -RIRGASFVDRDGNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQ-PS-VEYLFDDSISTLQD------------ 132 (372)
T ss_pred -CccceEEEeCCCCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhcc-CC-cEEEeCCEEEEEEe------------
Confidence 6677777765543222211100 1 11122457889999998876543 34 89999999999976
Q ss_pred CCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCcccc--ccCCceEEEEEEEeecCCceEEEE-ecCCC
Q 010200 213 PSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTG--WSYSQNAIICTVEHNKENYCAWQR-FLPAG 289 (515)
Q Consensus 213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g 289 (515)
+++.+++++++|+++++|+||+|||.+|.+|+.+...... ..++....++.++...+......+ +.++.
T Consensus 133 --------~~~~v~v~~~dg~~~~adlvIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~ 204 (372)
T PRK05868 133 --------DGDSVRVTFERAAAREFDLVIGADGLHSNVRRLVFGPEEQFVKRLGTHAAIFTVPNFLELDYWQTWHYGDST 204 (372)
T ss_pred --------cCCeEEEEECCCCeEEeCEEEECCCCCchHHHHhcCCcccceeecceEEEEEEcCCCCCCCcceEEEecCCc
Confidence 4466899999999999999999999999999998433221 233444444444332222223333 34556
Q ss_pred cEEEEecCCC-ceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcC-CCCCCCCCCCCCcccchhccccCccccccccccC
Q 010200 290 PIALLPIGDN-FSNIVWTMNPKDASDCKSMNEDDFVKILNHALDY-GYGPHPKSISSGSVDMFSWFRGDATLSAKECFEV 367 (515)
Q Consensus 290 ~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 367 (515)
.+.++|..++ ..+.++.+....... .....+...+.+.+.|.. +|... . .++. +.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~f~~~~w~~~-~--------l~~~-~~------------ 261 (372)
T PRK05868 205 MAGVYSARNNTEARAALAFMDTELRI-DYRDTEAQFAELQRRMAEDGWVRA-Q--------LLHY-MR------------ 261 (372)
T ss_pred EEEEEecCCCCceEEEEEEecCCccc-ccCChHHHHHHHHHHHhhCCCchH-H--------HHhh-cc------------
Confidence 6778888764 434444333221111 112234456666666642 34321 0 1111 00
Q ss_pred CcceEEeccceeeec-cccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHH
Q 010200 368 PPRVVKLASERMVFP-LSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKK 446 (515)
Q Consensus 368 ~~~~~~~~~~~~~~p-~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~ 446 (515)
.. ....++ +...++++|+.|||+|||||||+++|+.|||+|+||+||..|++.|... ..++ ..+|+.
T Consensus 262 ------~~-~~~~~~~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqGa~~AleDa~~La~~L~~~---~~~~--~~al~~ 329 (372)
T PRK05868 262 ------SA-PDFYFDEMSQILMDRWSRGRVALVGDAGYCCSPLSGQGTSVALLGAYILAGELKAA---GDDY--QLGFAN 329 (372)
T ss_pred ------cC-CceeeccceEEecCCCCCCCeeeeecccccCCCccCccHHHHHHHHHHHHHHHHhc---CCCH--HHHHHH
Confidence 00 000122 3334568999999999999999999999999999999999999999763 2244 889999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 010200 447 YEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFH 485 (515)
Q Consensus 447 Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~ 485 (515)
|++.++++..+.+.........|...+.+..++|+..+.
T Consensus 330 ye~~~~~~~~~~q~~~~~~~~~~~p~~~~~~~~~~~~~~ 368 (372)
T PRK05868 330 YHAEFHGFVERNQWLVSDNIPGGAPIPQEEFERIVHSIT 368 (372)
T ss_pred HHHHHhHHHHHhhhhhhccCCcccCCCHHHHHHhhcccc
Confidence 999999999999999999999999988888888877664
No 37
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=100.00 E-value=1.2e-38 Score=324.66 Aligned_cols=378 Identities=15% Similarity=0.095 Sum_probs=252.4
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (515)
.+||+||||||+|+++|+.|++. |++|+||||.+... .....+...++++++++|+++|+++.+...+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~----G~~v~viE~~~~~~--------~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~ 69 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKA----GIDNVILERQSRDY--------VLGRIRAGVLEQGTVDLLREAGVDERMDREG 69 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHC----CCCEEEEECCCCcc--------cCCceeEeeECHHHHHHHHHCCChHHHHhcC
Confidence 47999999999999999999996 99999999998531 0112345568999999999999999998865
Q ss_pred ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (515)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~ 214 (515)
. +...+.+++......+.+. ............+..+...|.+.+.+.| +.++++++++.+..
T Consensus 70 ~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~~g-~~~~~~~~~v~~~~-------------- 131 (390)
T TIGR02360 70 L-VHEGTEIAFDGQRFRIDLK--ALTGGKTVMVYGQTEVTRDLMEAREAAG-LTTVYDADDVRLHD-------------- 131 (390)
T ss_pred c-eecceEEeeCCEEEEEecc--ccCCCceEEEeCHHHHHHHHHHHHHhcC-CeEEEeeeeEEEEe--------------
Confidence 5 5666666654332222222 2111112223457889999999988877 88999998888753
Q ss_pred cccccccCCeeEEEcC-CCc--EEEeeEEEEecCCCchhhhhcCCccccccCCc--eEEEEEEEeecCCceEEEEecCCC
Q 010200 215 ATTLFTKGHLAKLDLS-DGT--SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQ--NAIICTVEHNKENYCAWQRFLPAG 289 (515)
Q Consensus 215 ~~~~~~~~~~~~v~~~-~g~--~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g 289 (515)
.+...+.|++. +|+ ++++|+||+|||.+|.||++++.......... ..+.+.+..............++.
T Consensus 132 -----~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 206 (390)
T TIGR02360 132 -----LAGDRPYVTFERDGERHRLDCDFIAGCDGFHGVSRASIPAEVLKEFERVYPFGWLGILSETPPVSHELIYSNHER 206 (390)
T ss_pred -----cCCCccEEEEEECCeEEEEEeCEEEECCCCchhhHHhcCcccceeeeccCCcceEEEecCCCCCCCceEEEeCCC
Confidence 01233455564 665 68999999999999999999854332111111 122232322111111122334566
Q ss_pred cEEEEecCC-CceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCC
Q 010200 290 PIALLPIGD-NFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVP 368 (515)
Q Consensus 290 ~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 368 (515)
.+.++|+.+ +...+++...... .......+.+.+.+.+.+. +. ..+.+.. .
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~----~~-------~~~~~~~---------------~ 258 (390)
T TIGR02360 207 GFALCSMRSATRSRYYVQVPLTD--KVEDWSDDRFWAELKRRLP----SE-------AAERLVT---------------G 258 (390)
T ss_pred ceEEEeccCCCcceEEEEcCCCC--ChhhCChhHHHHHHHHhcC----ch-------hhhhhcc---------------C
Confidence 677777754 3333455443322 1223445556666666442 10 0000000 0
Q ss_pred cceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHH
Q 010200 369 PRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYE 448 (515)
Q Consensus 369 ~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~ 448 (515)
+. .....+|+.....++|..|||+|||||||.|+|+.|||+|+||+||..|+++|...... + ...+|+.|+
T Consensus 259 ~~-----~~~~~~~l~~~~~~~~~~grvvLvGDAAH~~~P~~GQG~n~aieDA~~La~~L~~~~~~--~--~~~al~~Y~ 329 (390)
T TIGR02360 259 PS-----IEKSIAPLRSFVCEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVHYLYEALLEHYQE--G--SSAGIEGYS 329 (390)
T ss_pred Cc-----cceeeeeHHhhccccCccCCEEEEEccccCCCCCcCCchhHHHHHHHHHHHHHHHHhcc--C--hHHHHHHHH
Confidence 00 00123456555678899999999999999999999999999999999999999875432 2 378999999
Q ss_pred HHhhHHHHHHHHHHHHHHHhhcCC---CChHHHHHHHHHHhcccChhHHHHHHHHhhcC
Q 010200 449 AERKPANIVMMAVLDGFQKAYSVD---FGPLNILRAAAFHGAQYISPLKRNIISYASGE 504 (515)
Q Consensus 449 ~~r~~~~~~~~~~s~~~~~~~~~~---~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~ 504 (515)
+.|++++..++..++.+..+++.. ......++.+-+..+-..|.-+..+..+..|.
T Consensus 330 ~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (390)
T TIGR02360 330 ARALARVWKAERFSWWMTSLLHRFPDTDAFDQRIQQAELEYLLGSEAAQATLAENYVGL 388 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhccCC
Confidence 999999999999999999987643 23344566666777777788888888888885
No 38
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=100.00 E-value=3.7e-40 Score=332.60 Aligned_cols=334 Identities=24% Similarity=0.375 Sum_probs=223.1
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (515)
+||+||||||+||++|+.|++. |++|+||||.+.+. ..++++.+.++++++|+.+|+++.+.+...
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~----G~~v~i~E~~~~~~----------~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 67 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA----GIDVTIIERRPDPR----------PKGRGIGLSPNSLRILQRLGLLDEILARGS 67 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT----TCEEEEEESSSSCC----------CSSSSEEEEHHHHHHHHHTTEHHHHHHHSE
T ss_pred ceEEEECCCHHHHHHHHHHHhc----ccccccchhccccc----------ccccccccccccccccccccchhhhhhhcc
Confidence 7999999999999999999996 99999999999874 334589999999999999999999888764
Q ss_pred cc-cceEEEEeC--CCc-----cceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCc
Q 010200 136 AY-FDKMQVWDY--TGL-----GYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSI 207 (515)
Q Consensus 136 ~~-~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~ 207 (515)
.. .....++.. ... ................+.+.|..|.+.|.+.+++.| +++++++++++++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~g-v~i~~~~~v~~~~~------- 139 (356)
T PF01494_consen 68 PHEVMRIFFYDGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERG-VDIRFGTRVVSIEQ------- 139 (356)
T ss_dssp EECEEEEEEEEETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHT-EEEEESEEEEEEEE-------
T ss_pred cccceeeEeecccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhh-hhheeeeecccccc-------
Confidence 22 223333333 000 011111111223344578999999999999999998 99999999999976
Q ss_pred ccCCCCCcccccccCCeeEEEc--C-CCc--EEEeeEEEEecCCCchhhhhcCCccccccCC--ceEEEEEEEeecC--C
Q 010200 208 SVDSTPSATTLFTKGHLAKLDL--S-DGT--SLYAKLVVGADGGKSRVRELAGFKTTGWSYS--QNAIICTVEHNKE--N 278 (515)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~v~~--~-~g~--~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~--~~~~~~~~~~~~~--~ 278 (515)
+...+++.+ . +|+ +++||+||+|||.+|.+|+.++...+...+. ..++...+....+ .
T Consensus 140 -------------d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (356)
T PF01494_consen 140 -------------DDDGVTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDSDLSDPW 206 (356)
T ss_dssp -------------ETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEECHSHTTT
T ss_pred -------------cccccccccccccCCceeEEEEeeeecccCcccchhhhccccccCcccccccccccccccccccccc
Confidence 223344333 3 343 7999999999999999999998764433322 2222222222111 1
Q ss_pred c-eEEEEecCCCcEEEEecCC-CceEEEEEcCCCC--hHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccc
Q 010200 279 Y-CAWQRFLPAGPIALLPIGD-NFSNIVWTMNPKD--ASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFR 354 (515)
Q Consensus 279 ~-~~~~~~~~~g~~~~~p~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (515)
. ..+....+.+.++++|..+ +...+.+.+.... .........+.+.+.+...+. +..
T Consensus 207 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~ 267 (356)
T PF01494_consen 207 EDHCFIYSPPSGGFAIIPLENGDRSRFVWFLPFDESKEERPEEFSPEELFANLPEIFG-------------------PDL 267 (356)
T ss_dssp SCEEEEEEETTEEEEEEEETTTTEEEEEEEEETTTTTCCSTHCHHHHHHHHHHHHHHH-------------------TCH
T ss_pred ccccccccccccceeEeeccCCccceEEEeeecccccccccccccccccccccccccc-------------------ccc
Confidence 2 2444445556678999988 4444444443222 112222233444444444322 000
Q ss_pred cCccccccccccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhc
Q 010200 355 GDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAV 434 (515)
Q Consensus 355 ~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~ 434 (515)
... .......+++..+...+|..++|+|||||||+|+|+.|||+|+||+||..|++.|...++.
T Consensus 268 ------------~~~----~~~~~~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~~g 331 (356)
T PF01494_consen 268 ------------LET----EIDEISAWPIPQRVADRWVKGRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAALKG 331 (356)
T ss_dssp ------------HHH----EEEEEEEEEEEEEEESSSEETTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ------------ccc----ccccccccccccccccccccceeEEeccceeeecccccCCCCcccccHHHHHHHHHHHhcC
Confidence 000 1112234666666778899999999999999999999999999999999999999998753
Q ss_pred CCCcchHHHHHHHHHHhhHHHHHHHHHH
Q 010200 435 GADIGEASLLKKYEAERKPANIVMMAVL 462 (515)
Q Consensus 435 ~~~~~~~~al~~Y~~~r~~~~~~~~~~s 462 (515)
. ....+|+.|+++|+++++++++.+
T Consensus 332 ~---~~~~~l~~Y~~~r~~~~~~~~~~~ 356 (356)
T PF01494_consen 332 E---ASEEALKAYEQERRPRARKAVQFD 356 (356)
T ss_dssp S---SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C---cHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2 347899999999999999988753
No 39
>PTZ00367 squalene epoxidase; Provisional
Probab=100.00 E-value=4.5e-39 Score=336.87 Aligned_cols=391 Identities=18% Similarity=0.126 Sum_probs=260.8
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (515)
..+||+||||||+|+++|+.|++. |++|+|+||.+... .....|..+++++.++|+++|+++.+.+.
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~----G~~V~VlEr~~~~~---------~~r~~G~~L~p~g~~~L~~LGL~d~l~~i 98 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQ----GRKVLMLERDLFSK---------PDRIVGELLQPGGVNALKELGMEECAEGI 98 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhc----CCEEEEEccccccc---------cchhhhhhcCHHHHHHHHHCCChhhHhhc
Confidence 469999999999999999999996 99999999986210 11234678999999999999999988776
Q ss_pred hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHH--hcCCCceEEcCCeeEEEEeCCCCCCcccCC
Q 010200 134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCM--QNTEFQKTIYPSRLTSMALLPSSSSISVDS 211 (515)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~ 211 (515)
.. +..++.+++.++.. ...+. .....++.+++..+.+.|++.+ ...++++++. .+|+++..+....
T Consensus 99 ~~-~~~~~~v~~~~G~~-~~i~~---~~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~-~~v~~l~~~~~~~------ 166 (567)
T PTZ00367 99 GM-PCFGYVVFDHKGKQ-VKLPY---GAGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLE-GTVNSLLEEGPGF------ 166 (567)
T ss_pred Cc-ceeeeEEEECCCCE-EEecC---CCCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEE-eEEEEeccccCcc------
Confidence 65 57777777754432 12221 1223456788999999999887 3334588875 4788875411100
Q ss_pred CCCcccccccCCeeEEEcC-----------------------CCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEE
Q 010200 212 TPSATTLFTKGHLAKLDLS-----------------------DGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAI 268 (515)
Q Consensus 212 ~~~~~~~~~~~~~~~v~~~-----------------------~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~ 268 (515)
.+...++++++. +++++.+|+||+|||.+|.+|+.++.......+...+.
T Consensus 167 -------~~~v~gV~~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~ 239 (567)
T PTZ00367 167 -------SERAYGVEYTEAEKYDVPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFV 239 (567)
T ss_pred -------CCeeEEEEEecCCcccccccccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEE
Confidence 000122333333 36689999999999999999999975443334444332
Q ss_pred EEEEE-eecCC-ceEEEEecCCCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCc
Q 010200 269 ICTVE-HNKEN-YCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGS 346 (515)
Q Consensus 269 ~~~~~-~~~~~-~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (515)
...+. ...+. .....++.++++++++|+.++..++++....+... +.++....+.+.+.+.+.+. .
T Consensus 240 g~~~~~~~lp~~~~~~v~~g~~gpi~~yPl~~~~~r~lv~~~~~~~p-----~~~~~~~~l~~~~~p~l~~~-------l 307 (567)
T PTZ00367 240 GLVLKNVRLPKEQHGTVFLGKTGPILSYRLDDNELRVLVDYNKPTLP-----SLEEQSEWLIEDVAPHLPEN-------M 307 (567)
T ss_pred EEEEecccCCCCCeeEEEEcCCceEEEEEcCCCeEEEEEEecCCcCC-----ChHHHHHHHHHhhcccCcHH-------H
Confidence 22221 11222 23344568899999999998877655544332111 11122223322211011000 0
Q ss_pred ccchhccccCccccccccccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHH
Q 010200 347 VDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSR 426 (515)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~ 426 (515)
.+.+...+. .......+|....+...|..++++|||||||+|+|++|||+|+||+||..|++
T Consensus 308 ~~~f~~~l~------------------~~~~l~~~p~~~~p~~~~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~ 369 (567)
T PTZ00367 308 RESFIRASK------------------DTKRIRSMPNARYPPAFPSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAK 369 (567)
T ss_pred HHHHHHhhc------------------ccCCeEEeeHhhCCCccCCCCCEEEEEcccCCCCCcccccHHHHHHHHHHHHH
Confidence 111111000 00111124444445556778899999999999999999999999999999999
Q ss_pred HHHHhHh-cCCCcc----hHHHHH----HHHHHhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHH
Q 010200 427 IIAEGIA-VGADIG----EASLLK----KYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNI 497 (515)
Q Consensus 427 ~l~~~~~-~~~~~~----~~~al~----~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 497 (515)
.|..... .+.+.+ ...+|+ .|++.|++++..++..++.+.++|+. ..+|+..|+.+..=.....-.
T Consensus 370 ~L~~~~~~~~~d~~d~~~v~~aL~~~~~~Y~~~Rk~~a~~i~~ls~aL~~lf~~-----~~lr~~~~~y~~~gg~~~~~p 444 (567)
T PTZ00367 370 SLTGIKSLRSIDQNEMAEIEDAIQAAILSYARNRKTHASTINILSWALYSVFSS-----PALRDACLDYFSLGGECVTGP 444 (567)
T ss_pred HHHhhhcccCCCchhHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHhCh-----HHHHHHHHHHHhcCCcccccc
Confidence 9986432 111221 156677 99999999999999999999999987 569999999988766677888
Q ss_pred HHHhhcCCCCCCCC
Q 010200 498 ISYASGEQRLPLPL 511 (515)
Q Consensus 498 ~~~~~g~~~~~~~~ 511 (515)
+..++|+...|+.+
T Consensus 445 ~~ll~g~~~~p~~l 458 (567)
T PTZ00367 445 MSLLSGLDPSPGGL 458 (567)
T ss_pred HHHHcCCCCCcHHH
Confidence 99999999998753
No 40
>PRK06126 hypothetical protein; Provisional
Probab=100.00 E-value=1.6e-38 Score=337.99 Aligned_cols=343 Identities=22% Similarity=0.308 Sum_probs=237.8
Q ss_pred CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhh
Q 010200 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ 131 (515)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~ 131 (515)
.+..+||+||||||+||++|+.|++. |++|+||||.+.+ ...+++..++++++++|+++|+++.+.
T Consensus 4 ~~~~~~VlIVGaGpaGL~~Al~La~~----G~~v~viEr~~~~----------~~~~ra~~l~~r~~e~L~~lGl~~~l~ 69 (545)
T PRK06126 4 NTSETPVLIVGGGPVGLALALDLGRR----GVDSILVERKDGT----------AFNPKANTTSARSMEHFRRLGIADEVR 69 (545)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHC----CCcEEEEeCCCCC----------CCCCccccCCHHHHHHHHhcChHHHHH
Confidence 34568999999999999999999996 9999999998765 344668899999999999999999998
Q ss_pred hhhccc--cceEEEE-eCCCccceeeecccC--------------CCCcceEEechHHHHHHHHHHHhcCCCceEEcCCe
Q 010200 132 QHRHAY--FDKMQVW-DYTGLGYTKYNARDV--------------NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSR 194 (515)
Q Consensus 132 ~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~--------------~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~ 194 (515)
+.+... .....++ ...+.....+..... ..+...+.++|..|...|.+.+.+.++++|+++++
T Consensus 70 ~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~ 149 (545)
T PRK06126 70 SAGLPVDYPTDIAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHR 149 (545)
T ss_pred hhcCCccccCCceEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccE
Confidence 865421 1111122 112211111111100 11223467889999999999998775599999999
Q ss_pred eEEEEeCCCCCCcccCCCCCcccccccCCeeEEEc---CCCc--EEEeeEEEEecCCCchhhhhcCCccccccCCceEEE
Q 010200 195 LTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDGT--SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAII 269 (515)
Q Consensus 195 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~g~--~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~ 269 (515)
|++++. +.+.+++.+ .+|+ ++.+|+||+|||++|.||+.++....+..+....+.
T Consensus 150 v~~i~~--------------------~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~ 209 (545)
T PRK06126 150 LTDFEQ--------------------DADGVTATVEDLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLS 209 (545)
T ss_pred EEEEEE--------------------CCCeEEEEEEECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEE
Confidence 999976 233455554 3354 789999999999999999999887766665444444
Q ss_pred EEEEeec-----CCc--eEEEEecCCCcEEEEecCCCceEEEEE-cCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCC
Q 010200 270 CTVEHNK-----ENY--CAWQRFLPAGPIALLPIGDNFSNIVWT-MNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKS 341 (515)
Q Consensus 270 ~~~~~~~-----~~~--~~~~~~~~~g~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (515)
..+..+. ... ..+..+.++....+++...+. .+.+. ..... .....+.+.+.+.+.+.+. +.
T Consensus 210 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~--- 279 (545)
T PRK06126 210 IYIRAPGLAALVGHDPAWMYWLFNPDRRGVLVAIDGRD-EWLFHQLRGGE--DEFTIDDVDARAFVRRGVG----ED--- 279 (545)
T ss_pred EEEEcCchHHHhcCCCceEEEEECCCccEEEEEECCCC-eEEEEEecCCC--CCCCCCHHHHHHHHHHhcC----CC---
Confidence 4443321 111 223334566666666765443 22222 22221 1123456667777766442 10
Q ss_pred CCCCcccchhccccCccccccccccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHH
Q 010200 342 ISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDA 421 (515)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da 421 (515)
++..+... ..|++....+++|..|||+|+|||||.|+|+.|||+|+||+||
T Consensus 280 -------------------------~~~~i~~~----~~w~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~N~gieDa 330 (545)
T PRK06126 280 -------------------------IDYEVLSV----VPWTGRRLVADSYRRGRVFLAGDAAHLFTPTGGYGMNTGIGDA 330 (545)
T ss_pred -------------------------CCeEEEee----cccchhheehhhhccCCEEEechhhccCCCCcCcccchhHHHH
Confidence 11111111 1255555678899999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Q 010200 422 STLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYS 470 (515)
Q Consensus 422 ~~La~~l~~~~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~ 470 (515)
.+|+++|...++. ++...+|+.|+++|++++..++..+......+.
T Consensus 331 ~~La~~La~~~~~---~~~~~lL~~Y~~eR~p~~~~~~~~s~~~~~~~~ 376 (545)
T PRK06126 331 VNLAWKLAAVLNG---WAGPALLDSYEAERRPIAARNTDYARRNADALG 376 (545)
T ss_pred HHHHHHHHHHHcC---CCcHHHHhhhHHHhhHHHHHHHHHHHHHHHHhc
Confidence 9999999987653 234789999999999999999999988776554
No 41
>PRK07538 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-38 Score=328.12 Aligned_cols=341 Identities=19% Similarity=0.217 Sum_probs=229.1
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (515)
+||+||||||+||++|+.|++. |++|+||||.+.++ ..+.++.++++++++|+++|+++.+.....
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~----G~~v~v~E~~~~~~----------~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~ 66 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQR----GIEVVVFEAAPELR----------PLGVGINLLPHAVRELAELGLLDALDAIGI 66 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhC----CCcEEEEEcCCccc----------ccCcceeeCchHHHHHHHCCCHHHHHhhCC
Confidence 4899999999999999999996 99999999998662 345689999999999999999999877655
Q ss_pred cccceEEEEeCCCccceeeeccc-CCCCcceEEechHHHHHHHHHHHhc-CCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200 136 AYFDKMQVWDYTGLGYTKYNARD-VNKEILGCVVENKVLHSSLLSCMQN-TEFQKTIYPSRLTSMALLPSSSSISVDSTP 213 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~~-~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~ 213 (515)
+...+.+++..+......+... .......+.++|..|.+.|.+.+.+ .|..+|+++++|++++.
T Consensus 67 -~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~------------- 132 (413)
T PRK07538 67 -RTRELAYFNRHGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQ------------- 132 (413)
T ss_pred -CCcceEEEcCCCCEEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEe-------------
Confidence 5566777665443222211111 1112234679999999999999866 46457999999999976
Q ss_pred CcccccccCCeeEEEcCCC-----cEEEeeEEEEecCCCchhhhhcCCccccccCC-ceEEEEEEEeecCC-ceEEEEec
Q 010200 214 SATTLFTKGHLAKLDLSDG-----TSLYAKLVVGADGGKSRVRELAGFKTTGWSYS-QNAIICTVEHNKEN-YCAWQRFL 286 (515)
Q Consensus 214 ~~~~~~~~~~~~~v~~~~g-----~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~ 286 (515)
....+.+.+.++ +++.||+||+|||.+|.+|++++.......|. ...+.+.++.+... ...+..+.
T Consensus 133 -------~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g 205 (413)
T PRK07538 133 -------DADVTVVFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAPPFLTGRSMVMAG 205 (413)
T ss_pred -------cCCceEEEEeccCCCccceEEeeEEEECCCCCHHHhhhhcCCCCCCcccceEEEEEeecCccccCCCcEEEEc
Confidence 223344544432 48999999999999999999996554333333 23333333332211 11222232
Q ss_pred -CCCcEEEEecCCC-------ceEEEEEcCCCC--hHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccC
Q 010200 287 -PAGPIALLPIGDN-------FSNIVWTMNPKD--ASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGD 356 (515)
Q Consensus 287 -~~g~~~~~p~~~~-------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (515)
+++.+.++|+.++ ..+|++....+. .......+.....+++...|. +|..... + +..
T Consensus 206 ~~~~~~~~~p~~~~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~-~~~---- 272 (413)
T PRK07538 206 HLDGKLVVYPISEPVDADGRQLINWVAEVRVDDAGAPRREDWNRPGDLEDFLPHFA-DWRFDWL-------D-VPA---- 272 (413)
T ss_pred CCCCEEEEEECCCCcccCCceEEEEEEEEcCCccCCCcccccCCccCHHHHHHHhc-CCCCCcc-------c-HHH----
Confidence 3567888898753 334444333221 111111122233444444443 3432100 0 000
Q ss_pred ccccccccccCCcceEEeccceeeeccccc-cccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcC
Q 010200 357 ATLSAKECFEVPPRVVKLASERMVFPLSLK-HANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVG 435 (515)
Q Consensus 357 ~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~-~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~ 435 (515)
++........||+... +.++|..|+|+|||||||+|+|+.|||+|+||+||..|+++|.+. +
T Consensus 273 --------------~i~~~~~~~~~p~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~~---~ 335 (413)
T PRK07538 273 --------------LIRAAEAIYEYPMVDRDPLPRWTRGRVTLLGDAAHPMYPVGSNGASQAILDARALADALAAH---G 335 (413)
T ss_pred --------------HHhcCcceeeccccccCCCCcccCCcEEEEeeccCcCCCCCcccHHHHHHHHHHHHHHHHhc---C
Confidence 1111122223666554 468899999999999999999999999999999999999999873 2
Q ss_pred CCcchHHHHHHHHHHhhHHHHHHHHHHHH
Q 010200 436 ADIGEASLLKKYEAERKPANIVMMAVLDG 464 (515)
Q Consensus 436 ~~~~~~~al~~Y~~~r~~~~~~~~~~s~~ 464 (515)
+ ...+|+.|+++|++++..++..++.
T Consensus 336 -~--~~~aL~~Ye~~R~~~~~~~~~~s~~ 361 (413)
T PRK07538 336 -D--PEAALAAYEAERRPATAQIVLANRL 361 (413)
T ss_pred -C--HHHHHHHHHHHhhHHHHHHHHHhhh
Confidence 3 3789999999999999999998887
No 42
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=100.00 E-value=1.4e-38 Score=327.42 Aligned_cols=350 Identities=20% Similarity=0.276 Sum_probs=234.7
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCC-cEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G-~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (515)
++|+||||||+||++|+.|+++ | ++|+||||.+.++ ..+.++.+.++++++|+.+|+.+.+.+..
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~----g~~~v~v~Er~~~~~----------~~G~gi~l~~~~~~~L~~lg~~~~~~~~~ 66 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKH----SHLNVQLFEAAPAFG----------EVGAGVSFGANAVRAIVGLGLGEAYTQVA 66 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhc----CCCCEEEEecCCcCC----------CCccceeeCccHHHHHHHcCChhHHHHHh
Confidence 3799999999999999999997 6 6999999998763 34668999999999999999988877644
Q ss_pred cc---ccceEEEE--eCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCccc
Q 010200 135 HA---YFDKMQVW--DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISV 209 (515)
Q Consensus 135 ~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~ 209 (515)
.. ......+. +.......... .........++|..|.+.|.+.+.. ..++++++|++++.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~R~~l~~~L~~~~~~---~~v~~~~~v~~i~~--------- 131 (414)
T TIGR03219 67 DSTPAPWQDIWFEWRNGSDASYLGAT---IAPGVGQSSVHRADFLDALLKHLPE---GIASFGKRATQIEE--------- 131 (414)
T ss_pred cCCCccCcceeEEEEecCccceeeee---ccccCCcccCCHHHHHHHHHHhCCC---ceEEcCCEEEEEEe---------
Confidence 21 11222111 11111111110 0011112368899999999988753 56889999999976
Q ss_pred CCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCc-----cccccCCceEEEEEEEeecC-------
Q 010200 210 DSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFK-----TTGWSYSQNAIICTVEHNKE------- 277 (515)
Q Consensus 210 ~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~-----~~~~~~~~~~~~~~~~~~~~------- 277 (515)
.+..+++.+++|+++.+|+||+|||.+|.||+.+... ..+...+...+.+.++....
T Consensus 132 -----------~~~~~~v~~~~g~~~~ad~vVgADG~~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~ 200 (414)
T TIGR03219 132 -----------QAEEVQVLFTDGTEYRCDLLIGADGIKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAA 200 (414)
T ss_pred -----------cCCcEEEEEcCCCEEEeeEEEECCCccHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhccc
Confidence 3455889999999999999999999999999998321 11222344555555543210
Q ss_pred ---C---ceEEEEecCCCcEEEEecCCCce-EEEEEcCCCChH-----HhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCC
Q 010200 278 ---N---YCAWQRFLPAGPIALLPIGDNFS-NIVWTMNPKDAS-----DCKSMNEDDFVKILNHALDYGYGPHPKSISSG 345 (515)
Q Consensus 278 ---~---~~~~~~~~~~g~~~~~p~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (515)
. ......+.+++++.++|+.++.. ++++........ .......+...+.+.+.|. +|.+..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~v------ 273 (414)
T TIGR03219 201 GLDEHLVDVPQMYLGLDGHILTFPVRQGRLINVVAFISDRSQPKPTWPSDTPWVREATQREMLDAFA-GWGDAA------ 273 (414)
T ss_pred cccccccccceEEEcCCCeEEEEECCCCcEEEEEEEEcCcccccCCCCCCCcccCccCHHHHHHHhc-CCCHHH------
Confidence 0 11223456778888999988764 333333221100 0001112223444555554 554331
Q ss_pred cccchhccccCccccccccccCCcceEEeccceeeeccccc-cccccccCcEEEEcccccccCCccccchhhcHHHHHHH
Q 010200 346 SVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLK-HANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTL 424 (515)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~-~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~L 424 (515)
.+.++. ......|++... ..++|..|+|+|||||||+|.|+.|||+|+||+||..|
T Consensus 274 -~~~~~~----------------------~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~m~P~~GqGa~~AieDA~~L 330 (414)
T TIGR03219 274 -RALLEC----------------------IPAPTLWALHDLAELPGYVHGRVALIGDAAHAMLPHQGAGAGQGLEDAYFL 330 (414)
T ss_pred -HHHHHh----------------------CCCCCceeeeecccccceeeCcEEEEEcccCCCCCCcCcchHhHHHHHHHH
Confidence 111111 011112333332 36789999999999999999999999999999999999
Q ss_pred HHHHHHhHhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCChHH
Q 010200 425 SRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLN 477 (515)
Q Consensus 425 a~~l~~~~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~ 477 (515)
+++|........++ ..+|+.|++.|++++..++..++.+..+++..++...
T Consensus 331 a~~L~~~~~~~~~~--~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~~ 381 (414)
T TIGR03219 331 ARLLGDTELEAGDL--PALLEAYDDVRRPRACRVQRTSREAGELYELRDPAVG 381 (414)
T ss_pred HHHHHhhccCcchH--HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCChhcc
Confidence 99998754333333 7899999999999999999999999999987664433
No 43
>PRK07236 hypothetical protein; Provisional
Probab=100.00 E-value=7e-38 Score=319.31 Aligned_cols=338 Identities=20% Similarity=0.194 Sum_probs=227.5
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (515)
..++|+||||||+||++|+.|++. |++|+||||.+.+. ...+.++.++++++++|+++|+.+.. +.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~----G~~v~v~E~~~~~~---------~~~g~gi~l~~~~~~~l~~lg~~~~~-~~ 70 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRA----GWDVDVFERSPTEL---------DGRGAGIVLQPELLRALAEAGVALPA-DI 70 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhC----CCCEEEEecCCCCc---------CCCCceeEeCHHHHHHHHHcCCCccc-cc
Confidence 458999999999999999999996 99999999987541 12345888999999999999997765 33
Q ss_pred hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200 134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP 213 (515)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~ 213 (515)
.. +.....+++..+......+. . ...+.+..+.+.|.+.+ +.++|+++++|++++.
T Consensus 71 ~~-~~~~~~~~~~~g~~~~~~~~-----~--~~~~~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~------------- 126 (386)
T PRK07236 71 GV-PSRERIYLDRDGRVVQRRPM-----P--QTQTSWNVLYRALRAAF---PAERYHLGETLVGFEQ------------- 126 (386)
T ss_pred cc-CccceEEEeCCCCEeeccCC-----C--ccccCHHHHHHHHHHhC---CCcEEEcCCEEEEEEe-------------
Confidence 33 44455555544422111111 1 12356778888888765 3478999999999976
Q ss_pred CcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccC-CceEEEEEEEee---cCC----ceEE-EE
Q 010200 214 SATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSY-SQNAIICTVEHN---KEN----YCAW-QR 284 (515)
Q Consensus 214 ~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~-~~~~~~~~~~~~---~~~----~~~~-~~ 284 (515)
.+..+++++++|+++.+|+||+|||.+|.+|+.+.... ...| +...+.+.+... ... ...+ ..
T Consensus 127 -------~~~~v~v~~~~g~~~~ad~vIgADG~~S~vR~~l~~~~-~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 198 (386)
T PRK07236 127 -------DGDRVTARFADGRRETADLLVGADGGRSTVRAQLLPDV-RPTYAGYVAWRGLVDEAALPPEARAALRDRFTFQ 198 (386)
T ss_pred -------cCCeEEEEECCCCEEEeCEEEECCCCCchHHHHhCCCC-CCCcCCeEEEEEecchHHcCchhhhhcccceEEE
Confidence 34568899999999999999999999999999984332 2334 333344443321 111 1122 23
Q ss_pred ecCCCcEEEEecCC---------CceEEEEEcCCCChHHhh-----------------cCCHHHHHHHHHHhhcCCCCCC
Q 010200 285 FLPAGPIALLPIGD---------NFSNIVWTMNPKDASDCK-----------------SMNEDDFVKILNHALDYGYGPH 338 (515)
Q Consensus 285 ~~~~g~~~~~p~~~---------~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~ 338 (515)
..+++.++.+|+++ ...+++|....+...... ....+.+.+.+.+.+...|.+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 278 (386)
T PRK07236 199 LGPGSHILGYPVPGEDGSTEPGKRRYNWVWYRNAPAGEELDELLTDRDGTRRPFSVPPGALRDDVLAELRDDAAELLAPV 278 (386)
T ss_pred EcCCceEEEEECCCCCCCcCCCCcEEEEEEEecCCCccchhhhcccCCCccccCCCCccccCHHHHHHHHHHHHHhcCHH
Confidence 35667788888764 235677765443211000 0012334445544433123321
Q ss_pred CCCCCCCcccchhccccCccccccccccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcH
Q 010200 339 PKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGF 418 (515)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al 418 (515)
..+.+.. ......+++.....++|..+||+|+|||||+|+|+.|||+|+||
T Consensus 279 -------~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai 329 (386)
T PRK07236 279 -------FAELVEA----------------------TAQPFVQAIFDLEVPRMAFGRVALLGDAAFVARPHTAAGVAKAA 329 (386)
T ss_pred -------HHHHHhh----------------------CcCchhhhhhcccCcccccCcEEEEecccccCCCcchhhHHHHH
Confidence 0011110 11111234444445788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC
Q 010200 419 GDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSV 471 (515)
Q Consensus 419 ~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~ 471 (515)
+||..|+++|.... .+ ...+|+.|++.|++++..++..++.+..+++.
T Consensus 330 eDA~~La~~L~~~~---~~--~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~ 377 (386)
T PRK07236 330 ADAVALAEALAAAA---GD--IDAALAAWEAERLAVGAAIVARGRRLGARLQA 377 (386)
T ss_pred HHHHHHHHHHHhcc---cc--hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 99999999998641 12 37899999999999999999999999887754
No 44
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=100.00 E-value=6.6e-36 Score=314.10 Aligned_cols=370 Identities=17% Similarity=0.186 Sum_probs=237.3
Q ss_pred CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCC--chh
Q 010200 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGA--WQY 129 (515)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl--~~~ 129 (515)
..+..+|+||||||+||++|+.|++. |++|+||||++... . ......+++.++++++++|+.+|+ .++
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r~----Gi~V~V~Er~~~~~-r-----~~G~~~~~I~L~pngl~aLe~LGl~~~e~ 147 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKKK----GFDVLVFEKDLSAI-R-----GEGKYRGPIQIQSNALAALEAIDIDVAEQ 147 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHhc----CCeEEEEecccccc-c-----cccccCcccccCHHHHHHHHHcCcchHHH
Confidence 34668999999999999999999996 99999999986320 0 001112468999999999999985 455
Q ss_pred hhhhhccccceEE-EEeC-CCccceeeecc---cCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCC
Q 010200 130 VQQHRHAYFDKMQ-VWDY-TGLGYTKYNAR---DVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSS 204 (515)
Q Consensus 130 ~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~---~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~ 204 (515)
+.+.+......+. +.+. .+.....++.. .......++.++|..|.+.|.+.+.. ..++++++|++++.
T Consensus 148 l~~~g~~~~~~i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~---~~i~~g~~V~~I~~---- 220 (668)
T PLN02927 148 VMEAGCITGDRINGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGE---DVIRNESNVVDFED---- 220 (668)
T ss_pred HHhhcCcccceeeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCC---CEEEcCCEEEEEEE----
Confidence 5554432212221 2222 22111222211 00112345789999999999887632 34789999999976
Q ss_pred CCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC--ceEE
Q 010200 205 SSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN--YCAW 282 (515)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 282 (515)
.++.+++.+++|+++.+|+||+|||++|.+|+.+.........+..++.+.++..... ...+
T Consensus 221 ----------------~~d~VtV~~~dG~ti~aDlVVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~~~~p~~~~~~~~ 284 (668)
T PLN02927 221 ----------------SGDKVTVVLENGQRYEGDLLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADFIPADIESVGY 284 (668)
T ss_pred ----------------eCCEEEEEECCCCEEEcCEEEECCCCCcHHHHHhcCCCCCcccceEEEEEEcCCCcccccccce
Confidence 4467889999999999999999999999999998433333333444444555442211 1112
Q ss_pred EEe-cCCCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccc
Q 010200 283 QRF-LPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSA 361 (515)
Q Consensus 283 ~~~-~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (515)
..+ .+..++..+|..++..++++....+.. .....+...+++.+.|. +|.+.. .+.+...
T Consensus 285 ~~~~G~~~~~v~~~v~~g~~~~~~f~~~p~~---~~~~~~~~~e~L~~~f~-~w~~~v-------~elI~~t-------- 345 (668)
T PLN02927 285 RVFLGHKQYFVSSDVGGGKMQWYAFHEEPAG---GADAPNGMKKRLFEIFD-GWCDNV-------LDLLHAT-------- 345 (668)
T ss_pred EEEEcCCeEEEEEcCCCCeEEEEEEEECCcc---ccccchhHHHHHHHHhc-cCCHHH-------HHHHHhC--------
Confidence 233 344555566666665544433222111 01123456666777666 665431 1111110
Q ss_pred cccccCCcceEEeccceeeeccccc-cccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhc----CC
Q 010200 362 KECFEVPPRVVKLASERMVFPLSLK-HANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAV----GA 436 (515)
Q Consensus 362 ~~~~~i~~~~~~~~~~~~~~p~~~~-~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~----~~ 436 (515)
+. .....++++.. +..+|..|+|+|+|||||+|+|+.|||+|+||+||..|++.|..+++. +.
T Consensus 346 ------~~------~~i~~~~iyd~~p~~~W~~grVvLiGDAAH~~~P~~GqG~n~AieDa~~La~~L~~~~~~~~~~~~ 413 (668)
T PLN02927 346 ------EE------DAILRRDIYDRSPGFTWGKGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETNT 413 (668)
T ss_pred ------cc------ccceeeeEEeccCCCccccCcEEEEcCccCCCCCccccchHHHHHHHHHHHHHHHHhhccccccCC
Confidence 00 00112333333 245799999999999999999999999999999999999999887532 12
Q ss_pred CcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-------CCCChHHHHHHHHHH
Q 010200 437 DIGEASLLKKYEAERKPANIVMMAVLDGFQKAYS-------VDFGPLNILRAAAFH 485 (515)
Q Consensus 437 ~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~-------~~~~~~~~~r~~~~~ 485 (515)
+.....+|+.|+++|++++..++..++.....+. ....++.++|.+.+.
T Consensus 414 ~~~~~~aL~~Ye~~R~~rv~~i~~~ar~a~~~~~~~~~y~~~~~~p~~~~~~~~~~ 469 (668)
T PLN02927 414 PVDVVSSLKRYEESRRLRVAIIHAMARMAAIMASTYKAYLGVGLGPLSFLTKFRVP 469 (668)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcCCC
Confidence 2334789999999999999999998665444432 234566777766543
No 45
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=100.00 E-value=1.6e-34 Score=277.76 Aligned_cols=329 Identities=21% Similarity=0.256 Sum_probs=192.3
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (515)
..+|+|||||++||++|+.|+|. |++|+|||+...++ ..++++++.-+++++|+.+++.+.+.+..
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~----G~~v~VlE~~e~~R----------~~g~si~L~~ng~~aLkai~~~e~i~~~g 67 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRK----GIDVVVLESREDPR----------GEGTSINLALNGWRALKAIGLKEQIREQG 67 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHc----CCeEEEEeeccccc----------cCCcceeehhhHHHHHHHcccHHHHHHhc
Confidence 35799999999999999999996 99999999988884 33668899999999999999999999988
Q ss_pred ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCC----eeEEEEeCCCCCCcccC
Q 010200 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPS----RLTSMALLPSSSSISVD 210 (515)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~----~v~~i~~~~~~~~~~~~ 210 (515)
.+.-..+......+.....++.... ..+-..+.|..+...++..++..+.++++.+. ....++.
T Consensus 68 ip~~~~v~~~~~sg~~~~~~~~~~~--~~~i~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~---------- 135 (420)
T KOG2614|consen 68 IPLGGRVLIHGDSGKEVSRILYGEP--DEYILRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIET---------- 135 (420)
T ss_pred CcccceeeeecCCCCeeEecccCCc--hHHHHHHHHHHHHHHHHHhhcCCCeeecccccccccccceeee----------
Confidence 7333333333344444444432211 11112344455555555555545544444332 2222221
Q ss_pred CCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEE--EEEeecCC-ceEEEEecC
Q 010200 211 STPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIIC--TVEHNKEN-YCAWQRFLP 287 (515)
Q Consensus 211 ~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~ 287 (515)
.+....+++.+|.++++|++|+|||++|.||++|+...+.. ..+.++.+ .++...+. ...+ ...
T Consensus 136 ----------~~~~~~v~l~~g~~~~~dlligCDGa~S~Vr~~l~~~~p~~-~~~~ayrg~~~~~~~~~~~~~vf--~~~ 202 (420)
T KOG2614|consen 136 ----------LGKKLVVHLSDGTTVKGDLLIGCDGAYSKVRKWLGFKEPRY-DGSQAYRGLGFIPNGIPFGKKVF--AIY 202 (420)
T ss_pred ----------cccccceecCCCcEEEeeEEEEcCchHHHHHHHhcccCCcc-eeEEEEeeeeeccCCCCccccee--ccc
Confidence 34557788899999999999999999999999997765222 22233332 33333222 1111 123
Q ss_pred CCcEEEEecCCCceEEEEEc----------CCCChHHhhcCCH---HHHHHHHHHhhcCCCCCCCCCCCCCcccchhccc
Q 010200 288 AGPIALLPIGDNFSNIVWTM----------NPKDASDCKSMNE---DDFVKILNHALDYGYGPHPKSISSGSVDMFSWFR 354 (515)
Q Consensus 288 ~g~~~~~p~~~~~~~~~~~~----------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (515)
++.+..-|.+.....++|.. ..++.+....... +.|.+.+.+.+.--+.+. +..-
T Consensus 203 ~~~~~~~~~~~~~~~~y~~~~k~~t~t~~~~~~e~~~l~~~~~~v~~~~~en~~d~i~~~~~e~----------i~~t-- 270 (420)
T KOG2614|consen 203 GNGLHSWPRPGFHLIAYWFLDKSLTSTDFAPFDEPEKLKKTSLEVVDFFPENFPDIIELTGEES----------IVRT-- 270 (420)
T ss_pred CCeEEEcccCCceEEEEEeecCCcccccccCcCCHHHHhhhHHHHHHHhHHhHHHHHHhcChHH----------hhhc--
Confidence 33444444444444444443 2223222222111 111222222111000000 0000
Q ss_pred cCccccccccccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhc
Q 010200 355 GDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAV 434 (515)
Q Consensus 355 ~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~ 434 (515)
. ...+-.||+-.. ....++|+|+|||||+|.|+.|||+|+|+||+.+|+++|.++.+.
T Consensus 271 --------~-----------l~~r~p~~~i~~---~~s~~~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L~~~~~d 328 (420)
T KOG2614|consen 271 --------P-----------LADRPPWPLISV---KCSPGNVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAIND 328 (420)
T ss_pred --------h-----------hhhcCCcCeeee---ccCCCeEEEecccccccCCcccccccchHHHHHHHHHHHHHhccc
Confidence 0 000001222111 122358999999999999999999999999999999999998652
Q ss_pred ----CCCcc--------hHHHHHHHHHHhhHHHH
Q 010200 435 ----GADIG--------EASLLKKYEAERKPANI 456 (515)
Q Consensus 435 ----~~~~~--------~~~al~~Y~~~r~~~~~ 456 (515)
++-.. .+.++..|...|..+.-
T Consensus 329 ~s~~~~~~s~~~e~~~~ie~a~~~Y~~~r~~r~~ 362 (420)
T KOG2614|consen 329 VSLAGEEYSRENESHAIIELAMYSYKEERWRRLL 362 (420)
T ss_pred hhccccceecccchhHHHHHHHHHHHHHHHHHHh
Confidence 11111 25678888888844433
No 46
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=100.00 E-value=1.7e-32 Score=282.00 Aligned_cols=338 Identities=18% Similarity=0.181 Sum_probs=219.8
Q ss_pred CCCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhh
Q 010200 51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYV 130 (515)
Q Consensus 51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~ 130 (515)
.....+||+||||||||+++|+.|++. |++|+|+||.... .+.| +..++ ...++++++.+.+
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~----G~~VlllEr~~~~-~k~c----------gg~i~---~~~l~~lgl~~~~ 96 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKG----GIETFLIERKLDN-AKPC----------GGAIP---LCMVGEFDLPLDI 96 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCCC-CCCc----------ccccc---HhHHhhhcCcHHH
Confidence 445679999999999999999999996 9999999998632 2333 44454 3567788888776
Q ss_pred hhhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccC
Q 010200 131 QQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD 210 (515)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~ 210 (515)
... .+..+.++...+ ..+.+... .....+...++|..|++.|.+++.+.| ++++.+ +++++.. +
T Consensus 97 ~~~---~i~~~~~~~p~~-~~v~~~~~-~~~~~~~~~v~R~~~d~~L~~~A~~~G-a~~~~~-~v~~i~~---------~ 160 (450)
T PLN00093 97 IDR---KVTKMKMISPSN-VAVDIGKT-LKPHEYIGMVRREVLDSFLRERAQSNG-ATLING-LFTRIDV---------P 160 (450)
T ss_pred HHH---HhhhheEecCCc-eEEEeccc-CCCCCeEEEecHHHHHHHHHHHHHHCC-CEEEec-eEEEEEe---------c
Confidence 553 334555554322 22333211 111222346999999999999999988 899876 5777754 1
Q ss_pred CCCCcccccccCCeeEEEcCC-------C--cEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeec-----
Q 010200 211 STPSATTLFTKGHLAKLDLSD-------G--TSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK----- 276 (515)
Q Consensus 211 ~~~~~~~~~~~~~~~~v~~~~-------g--~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~----- 276 (515)
.+ .+..+.+++.+ | .+++||+||+|||.+|.+|+.++... ..+ ..++...+....
T Consensus 161 ~~--------~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S~vrr~lg~~~--~~~-~~~~~~~~~~~~~~~~~ 229 (450)
T PLN00093 161 KD--------PNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANSRVAKDIDAGD--YDY-AIAFQERIKIPDDKMEY 229 (450)
T ss_pred cC--------CCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcchHHHHHhCCCC--cce-eEEEEEEEeCChhhccc
Confidence 00 11334454422 3 47999999999999999999997642 111 112222222221
Q ss_pred CCceEEEE----ecCCCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhc
Q 010200 277 ENYCAWQR----FLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSW 352 (515)
Q Consensus 277 ~~~~~~~~----~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (515)
.......+ +.|+++.|++|.++ ..++....... ..+...+.+.+.+.+. ..
T Consensus 230 ~~~~~~~~~g~~~~p~~Y~WifP~g~-~~~VG~g~~~~------~~~~~~~~~~l~~~~~----~~-------------- 284 (450)
T PLN00093 230 YEDLAEMYVGDDVSPDFYGWVFPKCD-HVAVGTGTVVN------KPAIKKYQRATRNRAK----DK-------------- 284 (450)
T ss_pred cCCeEEEEeCCCCCCCceEEEEECCC-cEEEEEEEccC------CCChHHHHHHHHHHhh----hh--------------
Confidence 11112222 24778999999985 45555532211 1233444444443221 00
Q ss_pred cccCccccccccccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhH
Q 010200 353 FRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGI 432 (515)
Q Consensus 353 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~ 432 (515)
+.+ .++.+ ....|+.....++|..++++|||||||.++|++|+|++.||.++..+++.+.+.+
T Consensus 285 l~~-------------~~~~~----~~~~~ip~~~~~~~~~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~ 347 (450)
T PLN00093 285 IAG-------------GKIIR----VEAHPIPEHPRPRRVRGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGS 347 (450)
T ss_pred cCC-------------CeEEE----EEEEEcccccccceeCCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHH
Confidence 000 00111 1123333344567888999999999999999999999999999999999999988
Q ss_pred hcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCh
Q 010200 433 AVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGP 475 (515)
Q Consensus 433 ~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~ 475 (515)
..+.+......|+.|++.++......+..+..+.++|..++..
T Consensus 348 ~~g~~~~s~~~L~~Y~~~~~~~~g~~~~~~~~l~~~~~~~~~~ 390 (450)
T PLN00093 348 ENGTRMVDEADLREYLRKWDKKYWPTYKVLDILQKVFYRSNPA 390 (450)
T ss_pred hcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH
Confidence 7653333467899999999999999999999999988765433
No 47
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=100.00 E-value=2.3e-31 Score=271.25 Aligned_cols=322 Identities=20% Similarity=0.220 Sum_probs=213.9
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (515)
|||+||||||||+++|+.|++. |++|+|+|+.. +..+.| +..+++ +.++.+++.+.+...
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~----G~~V~l~E~~~-~~~~~c----------g~~i~~---~~l~~l~i~~~~~~~-- 60 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARA----GIETILLERAL-SNIKPC----------GGAIPP---CLIEEFDIPDSLIDR-- 60 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhC----CCcEEEEECCC-CCcCcC----------cCCcCH---hhhhhcCCchHHHhh--
Confidence 7999999999999999999996 99999999982 211223 445554 457778887776653
Q ss_pred cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~ 215 (515)
.+..+.++...+.. ...... ....+...++|..|++.|.+++.+.| ++++.+ +|+++..
T Consensus 61 -~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~r~~fd~~L~~~a~~~G-~~v~~~-~v~~v~~--------------- 119 (388)
T TIGR02023 61 -RVTQMRMISPSRVP-IKVTIP--SEDGYVGMVRREVFDSYLRERAQKAG-AELIHG-LFLKLER--------------- 119 (388)
T ss_pred -hcceeEEEcCCCce-eeeccC--CCCCceEeeeHHHHHHHHHHHHHhCC-CEEEee-EEEEEEE---------------
Confidence 44666666544321 111111 11112235999999999999999887 899765 6888865
Q ss_pred ccccccCCeeEEEcCC------C--cEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeec-----CCceEE
Q 010200 216 TTLFTKGHLAKLDLSD------G--TSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK-----ENYCAW 282 (515)
Q Consensus 216 ~~~~~~~~~~~v~~~~------g--~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 282 (515)
.++.+.+++.+ | .++.+|+||+|||.+|.+|+.++..... .+ ..++...+.... +.+...
T Consensus 120 -----~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v~r~lg~~~~~-~~-~~a~~~~~~~~~~~~~~~~~~~~ 192 (388)
T TIGR02023 120 -----DRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSPVAKELGLPKNL-PR-VIAYQERIKLPDDKMAYYEELAD 192 (388)
T ss_pred -----cCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcHHHHHcCCCCCC-cE-EEEEEEEecCCchhcccCCCeEE
Confidence 23445555542 2 3799999999999999999999765321 11 112222222111 111111
Q ss_pred EE----ecCCCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCcc
Q 010200 283 QR----FLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDAT 358 (515)
Q Consensus 283 ~~----~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (515)
.+ +.|+++.|++|.++ ..++....... ..+.+.+.+.+.+.+. ... .+
T Consensus 193 ~~~~~~~~p~~y~wv~P~~~-~~~vg~~~~~~------~~~~~~~~~~l~~~~~--~~~---------~~---------- 244 (388)
T TIGR02023 193 VYYGGEVSPDFYGWVFPKGD-HIAVGTGTGTH------GFDAKQLQANLRRRAG--LDG---------GQ---------- 244 (388)
T ss_pred EEECCCcCCCceEEEeeCCC-eeEEeEEECCC------CCCHHHHHHHHHHhhC--CCC---------ce----------
Confidence 11 24678999999975 45554432111 1234555555555321 000 00
Q ss_pred ccccccccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCc
Q 010200 359 LSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADI 438 (515)
Q Consensus 359 ~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~ 438 (515)
... ......|+ ...++|..+++++||||||.++|++|+|++.||++|..+++.|.+.+..+.
T Consensus 245 ------------~~~--~~~~~ip~--~~~~~~~~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~~~-- 306 (388)
T TIGR02023 245 ------------TIR--REAAPIPM--KPRPRWDFGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQNGD-- 306 (388)
T ss_pred ------------Eee--eeeEeccc--cccccccCCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhcCC--
Confidence 000 00111233 345678889999999999999999999999999999999999999887542
Q ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCC
Q 010200 439 GEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDF 473 (515)
Q Consensus 439 ~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~ 473 (515)
...|+.|++.++......+...+.+..++..++
T Consensus 307 --~~~L~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (388)
T TIGR02023 307 --ATDLRHYERKFMKLYGTTFRVLRVLQMVYYRSD 339 (388)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH
Confidence 578999999999999888888888888875543
No 48
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=100.00 E-value=3.7e-30 Score=262.36 Aligned_cols=331 Identities=21% Similarity=0.204 Sum_probs=213.7
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (515)
+||+||||||||+++|+.|++. |++|+|+||.... .+.| +..++ ...|+++|+.+.+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~----G~~V~llE~~~~~-~~~c----------g~~i~---~~~l~~~g~~~~~~~~-- 60 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASA----GIQTFLLERKPDN-AKPC----------GGAIP---LCMVDEFALPRDIIDR-- 60 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhC----CCcEEEEecCCCC-CCCc----------ccccc---HhhHhhccCchhHHHh--
Confidence 5899999999999999999996 9999999998643 2333 33444 3567888887766553
Q ss_pred cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~ 215 (515)
.+..+.++...+ ..+.+.... ....+.+.++|..|++.|.+++.+.| ++++.+ ++++++. .++
T Consensus 61 -~i~~~~~~~p~~-~~~~~~~~~-~~~~~~~~v~R~~~d~~L~~~a~~~G-~~v~~~-~~~~i~~---------~~~--- 123 (398)
T TIGR02028 61 -RVTKMKMISPSN-IAVDIGRTL-KEHEYIGMLRREVLDSFLRRRAADAG-ATLING-LVTKLSL---------PAD--- 123 (398)
T ss_pred -hhceeEEecCCc-eEEEeccCC-CCCCceeeeeHHHHHHHHHHHHHHCC-cEEEcc-eEEEEEe---------ccC---
Confidence 334555554332 222222111 11222246999999999999999988 999888 4777753 000
Q ss_pred ccccccCCeeEEEc--CC-----C--cEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecC-----CceE
Q 010200 216 TTLFTKGHLAKLDL--SD-----G--TSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKE-----NYCA 281 (515)
Q Consensus 216 ~~~~~~~~~~~v~~--~~-----g--~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 281 (515)
.+..+.+++ .+ | .+++||+||+|||.+|.+|+.++.... .+ ...+...+..+.+ .+..
T Consensus 124 -----~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S~v~~~~g~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~ 195 (398)
T TIGR02028 124 -----ADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANSRVAKEIDAGDY--SY-AIAFQERIRLPDEKMAYYDDLA 195 (398)
T ss_pred -----CCceEEEEEeeccccccCCCccEEEeCEEEECCCcchHHHHHhCCCCc--ce-EEEEEEEeeCChhhcccCCCeE
Confidence 112233432 22 3 379999999999999999999976421 11 1122222222211 1111
Q ss_pred EEE----ecCCCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCc
Q 010200 282 WQR----FLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDA 357 (515)
Q Consensus 282 ~~~----~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (515)
..+ +.|+++.|++|.++ ..++....... ....+.+.+.+...+. .. ..+
T Consensus 196 ~~~~g~~~~p~gY~WifP~~~-~~~VG~g~~~~------~~~~~~~~~~l~~~~~----~~--------------~~~-- 248 (398)
T TIGR02028 196 EMYVGDDVSPDFYGWVFPKCD-HVAVGTGTVAA------KPEIKRLQSGIRARAA----GK--------------VAG-- 248 (398)
T ss_pred EEEeCCCCCCCceEEEEECCC-eEEEEEEeCCC------CccHHHHHHhhhhhhh----hc--------------cCC--
Confidence 112 34778999999985 44554432211 1123445544433111 00 000
Q ss_pred cccccccccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCC
Q 010200 358 TLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGAD 437 (515)
Q Consensus 358 ~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~ 437 (515)
.++... ...++.....+++..++++|||||||.++|++|+|++.||.++..+|+.+.+++..+.+
T Consensus 249 -----------~~~~~~----~~~~ip~~~~~~~~~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~~~~ 313 (398)
T TIGR02028 249 -----------GRIIRV----EAHPIPEHPRPRRVVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRLGGA 313 (398)
T ss_pred -----------CcEEEE----EEEeccccccccEECCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhcCCC
Confidence 001111 11222223446777899999999999999999999999999999999999998876643
Q ss_pred cchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCC
Q 010200 438 IGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDF 473 (515)
Q Consensus 438 ~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~ 473 (515)
..+...|+.|++.++....+.+..+..+.++|..++
T Consensus 314 ~~~~~~l~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (398)
T TIGR02028 314 VTEEGDLAGYLRRWDKEYRPTYRVLDLLQRVFYRSN 349 (398)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 334678999999999999999999999999887644
No 49
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.98 E-value=3.2e-30 Score=253.39 Aligned_cols=287 Identities=20% Similarity=0.293 Sum_probs=188.4
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (515)
|||+||||||+||++|+.|++. |++|+|+||...++.. .++..+.+++++.+...+. ...
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~----g~~v~vie~~~~~~~~----------~~~~~~~~~~~~~l~~~~~--~~~---- 60 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADK----GLRVLLLEKKSFPRYK----------PCGGALSPRVLEELDLPLE--LIV---- 60 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHC----CCeEEEEeccCCCCcc----------cccCccCHhHHHHhcCCch--hhh----
Confidence 6999999999999999999996 9999999999876432 3366778877777655442 111
Q ss_pred cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~ 215 (515)
.......++...+.. ..... .....+.++|..+.+.|.+.+.+.| ++++++++|++++.
T Consensus 61 ~~~~~~~~~~~~~~~-~~~~~----~~~~~~~i~r~~l~~~l~~~~~~~g-v~~~~~~~v~~~~~--------------- 119 (295)
T TIGR02032 61 NLVRGARFFSPNGDS-VEIPI----ETELAYVIDRDAFDEQLAERAQEAG-AELRLGTTVLDVEI--------------- 119 (295)
T ss_pred hheeeEEEEcCCCcE-EEecc----CCCcEEEEEHHHHHHHHHHHHHHcC-CEEEeCcEEeeEEE---------------
Confidence 122333444333321 12111 1344578999999999999999887 99999999999976
Q ss_pred ccccccCCeeEEEcCCC-cEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecC--CceEEEEe-----cC
Q 010200 216 TTLFTKGHLAKLDLSDG-TSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKE--NYCAWQRF-----LP 287 (515)
Q Consensus 216 ~~~~~~~~~~~v~~~~g-~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----~~ 287 (515)
.++.+++.+.++ .++++|+||+|||.+|.+|+.++.......+. ..+...++.+.. .......+ .+
T Consensus 120 -----~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (295)
T TIGR02032 120 -----HDDRVVVIVRGGEGTVTAKIVIGADGSRSIVAKKLGLRKEPRELG-VAARAEVEMPDEEVDEDFVEVYIDRGISP 193 (295)
T ss_pred -----eCCEEEEEEcCccEEEEeCEEEECCCcchHHHHhcCCCCCCccee-eEEEEEEecCCcccCcceEEEEcCCCcCC
Confidence 334455555543 57999999999999999999987654322222 233344444321 12222222 24
Q ss_pred CCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccC
Q 010200 288 AGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEV 367 (515)
Q Consensus 288 ~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 367 (515)
++++|++|+.++..++.+...... ...+.++..+.+...++ .+.. .+
T Consensus 194 ~~~~~~~P~~~~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~~-~l~~---------~~------------------- 240 (295)
T TIGR02032 194 GGYGWVFPKGDGTANVGVGSRSAE----EGEDLKKYLKDFLARRP-ELKD---------AE------------------- 240 (295)
T ss_pred CceEEEEeCCCCeEEEeeeeccCC----CCCCHHHHHHHHHHhCc-cccc---------Cc-------------------
Confidence 588999999988877776655432 12344444444444222 0000 00
Q ss_pred CcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHH
Q 010200 368 PPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRII 428 (515)
Q Consensus 368 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l 428 (515)
+.... ....|.. ....+|..+||+++|||||+++|++|||+|+||+||..+|++|
T Consensus 241 ---~~~~~--~~~~~~~-~~~~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 241 ---TVEVI--GAPIPIG-RPDDKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred ---EEeee--ceeeccC-CCCCccccCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence 01100 0012221 1345778899999999999999999999999999999999874
No 50
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.97 E-value=4.5e-29 Score=254.60 Aligned_cols=334 Identities=18% Similarity=0.178 Sum_probs=217.0
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (515)
..|||+||||||||++||+.|++. |++|+|+||...++.+.| .+..+.+..++.+......+ +..
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~----G~~VlvlEk~~~~G~k~~---------~~~~~~~~~l~~l~~~~~~~-i~~- 66 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKA----GLDVLVLEKGSEPGAKPC---------CGGGLSPRALEELIPDFDEE-IER- 66 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHc----CCeEEEEecCCCCCCCcc---------ccceechhhHHHhCCCcchh-hhe-
Confidence 469999999999999999999997 899999999999976655 13566666655433222111 111
Q ss_pred hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200 134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP 213 (515)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~ 213 (515)
.+....++.... ...+.... ..++.++|..++++|.+++++.| ++++.++++.++..
T Consensus 67 ---~v~~~~~~~~~~--~~~~~~~~----~~~y~v~R~~fd~~La~~A~~aG-ae~~~~~~~~~~~~------------- 123 (396)
T COG0644 67 ---KVTGARIYFPGE--KVAIEVPV----GEGYIVDRAKFDKWLAERAEEAG-AELYPGTRVTGVIR------------- 123 (396)
T ss_pred ---eeeeeEEEecCC--ceEEecCC----CceEEEEhHHhhHHHHHHHHHcC-CEEEeceEEEEEEE-------------
Confidence 334444444422 22222111 45799999999999999999999 99999999999987
Q ss_pred CcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCCceEEEE-----ecCC
Q 010200 214 SATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQR-----FLPA 288 (515)
Q Consensus 214 ~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 288 (515)
+++..+.....++.++++|+||+|||.+|.+++.++........-..++.-.+..+.+....... ..+.
T Consensus 124 ------~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l~~~lg~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 197 (396)
T COG0644 124 ------EDDGVVVGVRAGDDEVRAKVVIDADGVNSALARKLGLKDRKPEDYAIGVKEVIEVPDDGDVEEFLYGPLDVGPG 197 (396)
T ss_pred ------eCCcEEEEEEcCCEEEEcCEEEECCCcchHHHHHhCCCCCChhheeEEeEEEEecCCCCceEEEEecCCccCCC
Confidence 12233444444446899999999999999999999877111111122222233333222222222 3477
Q ss_pred CcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCC
Q 010200 289 GPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVP 368 (515)
Q Consensus 289 g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 368 (515)
|+.|++|..++..++........ .. ..... +..+.+..... ......+
T Consensus 198 Gy~wifP~~~~~~~VG~g~~~~~-~~-~~~~~-~~l~~f~~~~~----------------~~~~~~~------------- 245 (396)
T COG0644 198 GYGWIFPLGDGHANVGIGVLLDD-PS-LSPFL-ELLERFKEHPA----------------IRKLLLG------------- 245 (396)
T ss_pred ceEEEEECCCceEEEEEEEecCC-cC-CCchH-HHHHHHHhCcc----------------cchhccC-------------
Confidence 99999999999888888765554 11 11111 23333322110 0000000
Q ss_pred cceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHH
Q 010200 369 PRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYE 448 (515)
Q Consensus 369 ~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~ 448 (515)
.++.+... ...|........+..+++++|||||..++|++|.|+..||.+|..+|+.|.+....+ ...|..|+
T Consensus 246 ~~~~~~~~--~~ip~~g~~~~~~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~~-----~~~l~~Y~ 318 (396)
T COG0644 246 GKILEYAA--GGIPEGGPASRPLVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALEGG-----EEALAEYE 318 (396)
T ss_pred CceEEEee--eecccCCcCCCccccCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHHHHcC-----hhHHHHHH
Confidence 00111111 123433322222678899999999999999999999999999999999999987644 56788899
Q ss_pred HHhhHHHHHHHHHHHHHHHhhc
Q 010200 449 AERKPANIVMMAVLDGFQKAYS 470 (515)
Q Consensus 449 ~~r~~~~~~~~~~s~~~~~~~~ 470 (515)
+.++................+.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~ 340 (396)
T COG0644 319 RLLRKSLAREDLKSLRLLKLLL 340 (396)
T ss_pred HHHHHHHHHHHHHHhhhhhhHH
Confidence 9988776666665555555443
No 51
>PRK11445 putative oxidoreductase; Provisional
Probab=99.97 E-value=1.1e-29 Score=255.20 Aligned_cols=307 Identities=19% Similarity=0.169 Sum_probs=184.1
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (515)
|||+||||||||+++|+.|++ . ++|+|+||.+.+...+ ....+|..+++++.++|+++|++........
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~----~-~~V~liE~~~~~~~~~------~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~ 70 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAG----K-MKVIAIDKKHQCGTEG------FSKPCGGLLAPDAQKSFAKDGLTLPKDVIAN 70 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhc----c-CCEEEEECCCcccccc------ccCcCcCccCHHHHHHHHHcCCCCCcceeec
Confidence 799999999999999999999 5 8999999998652111 2234578899999999999998532111000
Q ss_pred cccceEEEEeCCCccceeeeccc-CCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200 136 AYFDKMQVWDYTGLGYTKYNARD-VNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~ 214 (515)
.....+.. +.+.... .......+.++|.+|.+.|.+.+ +.+ ++++++++|++++.
T Consensus 71 ~~~~~~~~--------~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~-~~g-v~v~~~~~v~~i~~-------------- 126 (351)
T PRK11445 71 PQIFAVKT--------IDLANSLTRNYQRSYINIDRHKFDLWLKSLI-PAS-VEVYHNSLCRKIWR-------------- 126 (351)
T ss_pred cccceeeE--------ecccccchhhcCCCcccccHHHHHHHHHHHH-hcC-CEEEcCCEEEEEEE--------------
Confidence 00000100 1111000 00111224699999999999864 455 99999999999976
Q ss_pred cccccccCCeeEEEc-CCCc--EEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCCc---eEEEEecCC
Q 010200 215 ATTLFTKGHLAKLDL-SDGT--SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENY---CAWQRFLPA 288 (515)
Q Consensus 215 ~~~~~~~~~~~~v~~-~~g~--~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 288 (515)
.++.+.+.+ ++|+ +++||+||+|||.+|.+|+.++.......+ .++...+....+.+ ..+..-...
T Consensus 127 ------~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~vr~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~f~~~~~~ 198 (351)
T PRK11445 127 ------EDDGYHVIFRADGWEQHITARYLVGADGANSMVRRHLYPDHQIRKY--VAIQQWFAEKHPVPFYSCIFDNEITD 198 (351)
T ss_pred ------cCCEEEEEEecCCcEEEEEeCEEEECCCCCcHHhHHhcCCCchhhE--EEEEEEecCCCCCCCcceEEeccCCC
Confidence 334566665 4664 689999999999999999998654322222 22232332222211 112222346
Q ss_pred CcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCC
Q 010200 289 GPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVP 368 (515)
Q Consensus 289 g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 368 (515)
++.|.+|..+.. .+....+....... .+.+.+.+.+ +...+.+. +.
T Consensus 199 ~~~W~~p~~~~~-~~g~~~~~~~~~~~----~~~l~~~l~~-~~~~~~~~-----------~~----------------- 244 (351)
T PRK11445 199 CYSWSISKDGYF-IFGGAYPMKDGRER----FETLKEKLSA-FGFQFGKP-----------VK----------------- 244 (351)
T ss_pred ceEEEeCCCCcE-EecccccccchHHH----HHHHHHHHHh-cccccccc-----------cc-----------------
Confidence 788989875533 33222211111100 0111112211 11011100 00
Q ss_pred cceEEeccceeeeccccccccc--cccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHH
Q 010200 369 PRVVKLASERMVFPLSLKHANN--YVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKK 446 (515)
Q Consensus 369 ~~~~~~~~~~~~~p~~~~~~~~--~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~ 446 (515)
.. ..+++....... +.+++++|||||||.++|++|+|+|.|++||..|++.|.+.. +..++.
T Consensus 245 -----~~---~~~~~~~~~~~~~~~~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~~--------~~~~~~ 308 (351)
T PRK11445 245 -----TE---ACTVLRPSRWQDFVCGKDNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNKQP--------EKLNTA 308 (351)
T ss_pred -----cc---cccccCcccccccccCCCCEEEEEcccCccCCccCccHHHHHHhHHHHHHHHHhcc--------cchHHH
Confidence 00 001111111122 335899999999999999999999999999999999998742 446889
Q ss_pred HHHHhhHHH
Q 010200 447 YEAERKPAN 455 (515)
Q Consensus 447 Y~~~r~~~~ 455 (515)
|++.++.-.
T Consensus 309 y~~~~~~~~ 317 (351)
T PRK11445 309 YWRKTRKLR 317 (351)
T ss_pred HHHHHHHHH
Confidence 998776644
No 52
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.97 E-value=4.1e-30 Score=281.15 Aligned_cols=329 Identities=17% Similarity=0.169 Sum_probs=211.4
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcC--Cchhhhhh
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIG--AWQYVQQH 133 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lg--l~~~~~~~ 133 (515)
++|+||||||+||++|+.|++.+ +|++|+||||.+... ..+.++.+++++++.|+.++ +...+...
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~--~G~~V~vlEr~~~~~----------~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~ 68 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLD--PAHEVTVVERNRPYD----------TFGWGVVFSDATLGNLRAADPVSAAAIGDA 68 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhC--CCCeEEEEecCCCCc----------ccCcceEccHHHHHHHHhcCHHHHHHHHHh
Confidence 47999999999999999999952 289999999998663 33458899999999888776 22233222
Q ss_pred hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200 134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP 213 (515)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~ 213 (515)
......+.+... +. ... . .......++|.+|.+.|++++.+.| ++|+++++|+++..
T Consensus 69 -~~~~~~~~~~~~-g~-~~~-~-----~g~~~~~i~R~~L~~~L~e~a~~~G-V~i~~g~~v~~i~~------------- 125 (765)
T PRK08255 69 -FNHWDDIDVHFK-GR-RIR-S-----GGHGFAGIGRKRLLNILQARCEELG-VKLVFETEVPDDQA------------- 125 (765)
T ss_pred -cccCCceEEEEC-CE-EEE-E-----CCeeEecCCHHHHHHHHHHHHHHcC-CEEEeCCccCchhh-------------
Confidence 112333444322 11 111 0 1111245899999999999999998 99999998876632
Q ss_pred CcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCcccc---ccCCceEEEEEEEeecCCceEEEEecCCCc
Q 010200 214 SATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTG---WSYSQNAIICTVEHNKENYCAWQRFLPAGP 290 (515)
Q Consensus 214 ~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 290 (515)
....+|+||+|||.+|.+|+.+.....+ ..+....+.+.... .+...........++
T Consensus 126 -------------------~~~~~D~VVgADG~~S~vR~~~~~~~~~~~~~~~~~~~w~g~~~~-~~~~~~~~~~~~~g~ 185 (765)
T PRK08255 126 -------------------LAADADLVIASDGLNSRIRTRYADTFQPDIDTRRCRFVWLGTHKV-FDAFTFAFEETEHGW 185 (765)
T ss_pred -------------------hhcCCCEEEEcCCCCHHHHHHHHhhcCCceecCCCceEEecCCCc-ccceeEEEEecCCce
Confidence 0147899999999999999986321111 11111111111110 011111111123443
Q ss_pred E--EEEecCCCceEEEEEcCCCChHH--hhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCcccccccccc
Q 010200 291 I--ALLPIGDNFSNIVWTMNPKDASD--CKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFE 366 (515)
Q Consensus 291 ~--~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (515)
+ ..+|+.++...+++.+..+.... ....+.+...+.+.+.|. +|.+... .+...
T Consensus 186 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~-~~~~~~~--------li~~~------------- 243 (765)
T PRK08255 186 FQAHAYRFDDDTSTFIVETPEEVWRAAGLDEMSQEESIAFCEKLFA-DYLDGHP--------LMSNA------------- 243 (765)
T ss_pred EEEEEeeeCCCCcEEEEEcCHHHHHhcCCccCCHHHHHHHHHHHhH-HhcCCCc--------ccccc-------------
Confidence 3 34677777666666554332211 122456677788877776 4533211 00000
Q ss_pred CCcceEEeccceeeeccccccccccccCc----EEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHH
Q 010200 367 VPPRVVKLASERMVFPLSLKHANNYVSKR----VVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEAS 442 (515)
Q Consensus 367 i~~~~~~~~~~~~~~p~~~~~~~~~~~~~----v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~ 442 (515)
.. . ....+ .++.....++|..++ ++|+|||||+++|+.|||+|+||+||..|+++|.... .+ ...
T Consensus 244 --~~-~-~~~~w--~~~~~~~~~~w~~gr~~~~v~liGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~---~~--~~~ 312 (765)
T PRK08255 244 --SH-L-RGSAW--INFPRVVCERWVHWNRRVPVVLMGDAAHTAHFSIGSGTKLALEDAIELARCLHEHP---GD--LPA 312 (765)
T ss_pred --cc-c-cccee--eecceeccCCCccCCCcccEEEEEcCcccCCCCcchhHHHHHHHHHHHHHHHHHcc---cc--HHH
Confidence 00 0 00001 112222457898888 9999999999999999999999999999999998742 12 378
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhcCC
Q 010200 443 LLKKYEAERKPANIVMMAVLDGFQKAYSVD 472 (515)
Q Consensus 443 al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~ 472 (515)
+|+.|++.|++++..++..++....+|...
T Consensus 313 al~~ye~~R~~r~~~~~~~s~~~~~~~~~~ 342 (765)
T PRK08255 313 ALAAYEEERRVEVLRIQNAARNSTEWFENV 342 (765)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCceeeec
Confidence 999999999999999999999888877653
No 53
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.97 E-value=7.8e-30 Score=240.55 Aligned_cols=399 Identities=16% Similarity=0.151 Sum_probs=288.4
Q ss_pred CCCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhh
Q 010200 51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYV 130 (515)
Q Consensus 51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~ 130 (515)
..+..+||||||||.+|.++|+.|+|. |.+|+|+||+-...+ .--|..++|.+...|.+||+.|.+
T Consensus 41 ~~~~~~DvIIVGAGV~GsaLa~~L~kd----GRrVhVIERDl~EPd----------RivGEllQPGG~~~L~~LGl~Dcv 106 (509)
T KOG1298|consen 41 RNDGAADVIIVGAGVAGSALAYALAKD----GRRVHVIERDLSEPD----------RIVGELLQPGGYLALSKLGLEDCV 106 (509)
T ss_pred ccCCcccEEEECCcchHHHHHHHHhhC----CcEEEEEecccccch----------HHHHHhcCcchhHHHHHhCHHHHh
Confidence 344578999999999999999999996 999999999976532 333789999999999999999999
Q ss_pred hhhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccC
Q 010200 131 QQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD 210 (515)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~ 210 (515)
+....+...+..++.+.....+.++....+..+.|..++..+|.+-|++.+...++|++..| .|.++.. +
T Consensus 107 e~IDAQ~v~Gy~ifk~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeG-tV~sLle---------e 176 (509)
T KOG1298|consen 107 EGIDAQRVTGYAIFKDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEG-TVKSLLE---------E 176 (509)
T ss_pred hcccceEeeeeEEEeCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeee-eHHHHHh---------c
Confidence 88777788888999888888888888888888888889999999999999999998998877 6777654 1
Q ss_pred CCCCcccccccCCeeEEEcCCCc--EEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeec--CCceEEEEec
Q 010200 211 STPSATTLFTKGHLAKLDLSDGT--SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--ENYCAWQRFL 286 (515)
Q Consensus 211 ~~~~~~~~~~~~~~~~v~~~~g~--~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 286 (515)
++ ...+++....+|+ +..|.+.|.|||.+|.+||.+-.+... ....+++........ .....+..+.
T Consensus 177 ~g--------vvkGV~yk~k~gee~~~~ApLTvVCDGcfSnlRrsL~~~~v~-~V~S~fVG~vl~N~~l~~p~hghvIL~ 247 (509)
T KOG1298|consen 177 EG--------VVKGVTYKNKEGEEVEAFAPLTVVCDGCFSNLRRSLCDPKVE-EVPSYFVGLVLKNCRLPAPNHGHVILS 247 (509)
T ss_pred cC--------eEEeEEEecCCCceEEEecceEEEecchhHHHHHHhcCCccc-ccchheeeeeecCCCCCCCCcceEEec
Confidence 00 2234444444454 678999999999999999999432221 133333333222221 1134445566
Q ss_pred CCCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCcccccccccc
Q 010200 287 PAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFE 366 (515)
Q Consensus 287 ~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (515)
...++.++|+.....++.+-.+..+... ....+...++.+...+.-.+. ..+.|+....
T Consensus 248 ~pspil~Y~ISStEvRcl~~v~g~~~Ps---i~~gem~~~mk~~v~PqiP~~----------lR~~F~~av~-------- 306 (509)
T KOG1298|consen 248 KPSPILVYQISSTEVRCLVDVPGQKLPS---IANGEMATYMKESVAPQIPEK----------LRESFLEAVD-------- 306 (509)
T ss_pred CCCcEEEEEecchheEEEEecCcccCCc---ccchhHHHHHHHhhCcCCCHH----------HHHHHHHHhh--------
Confidence 7889999999999999998887654332 222233333333222110000 1111111000
Q ss_pred CCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHH
Q 010200 367 VPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKK 446 (515)
Q Consensus 367 i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~ 446 (515)
.....+.|-...++......+++|+|||..+-+|.+|.||.-|+.|...|-+.|.....=.+.....+.++.
T Consensus 307 --------~g~irsmpn~~mpa~~~~~~G~illGDAfNMRHPltggGMtV~l~Di~lLr~ll~pl~dL~d~ekv~~~i~s 378 (509)
T KOG1298|consen 307 --------EGNIRSMPNSSMPATLNDKKGVILLGDAFNMRHPLTGGGMTVALSDIVLLRRLLKPLPDLSDAEKVSDYIKS 378 (509)
T ss_pred --------ccchhcCccccCCCCcCCCCceEEEcccccccCCccCCceEeehhHHHHHHHHhccccccccHHHHHHHHHH
Confidence 000111333333444455678999999999999999999999999999999999874322211122567899
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhcC-CCChHHHHHHHHHHhcccChhHHHHHHHHhhcCCCCCCCC
Q 010200 447 YEAERKPANIVMMAVLDGFQKAYSV-DFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLPL 511 (515)
Q Consensus 447 Y~~~r~~~~~~~~~~s~~~~~~~~~-~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 511 (515)
|...|++....+.-.+..++++|.. .+-....+|+..+..+..=..-....+...+|++.+|+.+
T Consensus 379 Fy~~RKp~s~tINtLa~Aly~vf~as~dea~~~mr~gCfdYl~~GG~c~sGpv~lLsGlnP~Pl~L 444 (509)
T KOG1298|consen 379 FYWIRKPYSATINTLANALYQVFVASTDEARKAMRKGCFDYLKRGGFCVSGPVALLSGLNPRPLSL 444 (509)
T ss_pred HHHhhcchhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCccccchHHHhcCCCCCchHH
Confidence 9999999999999999999999977 6777889999999998886667788999999999999754
No 54
>PRK10015 oxidoreductase; Provisional
Probab=99.97 E-value=4e-28 Score=249.33 Aligned_cols=348 Identities=16% Similarity=0.158 Sum_probs=203.3
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCch-hhhh
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQ-YVQQ 132 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~-~~~~ 132 (515)
.+||||||||||||+++|+.|++. |++|+|+||.+.++.+.+ .+..+....++.+. -++.. ...+
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~----G~~VlliEr~~~~g~k~~---------~gg~i~~~~~~~l~-~~~~~~~~i~ 69 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARA----GLDVLVIERGDSAGCKNM---------TGGRLYAHTLEAII-PGFAASAPVE 69 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhC----CCeEEEEecCCCCCcccc---------cCceeecccHHHHc-ccccccCCcc
Confidence 469999999999999999999996 999999999988754432 12223323322221 01111 0011
Q ss_pred hhccccceEEEEeCCCccceeeecccCCC-CcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCC
Q 010200 133 HRHAYFDKMQVWDYTGLGYTKYNARDVNK-EILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS 211 (515)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~ 211 (515)
... ....+.+....+...+.+....... ...++.+.|..|+++|.+++++.| ++++.+++|+++..
T Consensus 70 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~G-v~i~~~~~V~~i~~----------- 136 (429)
T PRK10015 70 RKV-TREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAG-AQFIPGVRVDALVR----------- 136 (429)
T ss_pred ccc-cceeEEEEeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcC-CEEECCcEEEEEEE-----------
Confidence 111 1122333333332223322211111 223688999999999999999988 99999999999875
Q ss_pred CCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCC-ceEEEEEEEeecC-----------Cc
Q 010200 212 TPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYS-QNAIICTVEHNKE-----------NY 279 (515)
Q Consensus 212 ~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~-~~~~~~~~~~~~~-----------~~ 279 (515)
.++.+.....++.++.||+||+|||.+|.+++.++......... ..++...+..+.. ..
T Consensus 137 ---------~~~~v~~v~~~~~~i~A~~VI~AdG~~s~v~~~lg~~~~~~~~~~~~gvk~~~~~~~~~i~~~~~~~~~~g 207 (429)
T PRK10015 137 ---------EGNKVTGVQAGDDILEANVVILADGVNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEG 207 (429)
T ss_pred ---------eCCEEEEEEeCCeEEECCEEEEccCcchhhhcccCCCcCCCcCeEEEEEEEEEeCCHHHhhHhhcCCCCCC
Confidence 22334432334557999999999999999999987643221111 1222222222211 01
Q ss_pred eEEEEec--CCC---cEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccc
Q 010200 280 CAWQRFL--PAG---PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFR 354 (515)
Q Consensus 280 ~~~~~~~--~~g---~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (515)
..|..+. ..+ ..|++|. .+..++.+.+...... ....++.++++.+.+. + .+..++
T Consensus 208 ~~w~~~g~~~~g~~g~G~~~~~-~d~v~vGv~~~~~~~~-~~~~~~~~~l~~~~~~------p-----------~~~~~~ 268 (429)
T PRK10015 208 AAWLFAGSPSDGLMGGGFLYTN-KDSISLGLVCGLGDIA-HAQKSVPQMLEDFKQH------P-----------AIRPLI 268 (429)
T ss_pred eEEEecCccCCCCCCceEEEEc-CCcEEEEEEEehhhhc-cCCCCHHHHHHHHhhC------h-----------HHHHHh
Confidence 1122111 111 3444553 3455555433221111 1224556666555331 0 011110
Q ss_pred cCccccccccccCCcceEEeccceeeeccccc-cccccccCcEEEEcccccccC--CccccchhhcHHHHHHHHHHHHHh
Q 010200 355 GDATLSAKECFEVPPRVVKLASERMVFPLSLK-HANNYVSKRVVLIGDAAHTVH--PLAGQGVNLGFGDASTLSRIIAEG 431 (515)
Q Consensus 355 ~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~-~~~~~~~~~v~lvGDAAh~~~--P~~G~G~n~al~da~~La~~l~~~ 431 (515)
... ++.+.. .+..|.... ..++...+++++|||||+.++ |++|+|+++||.++..+|+++.++
T Consensus 269 ~~~------------~~~e~~--~~~ip~gg~~~~~~~~~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a 334 (429)
T PRK10015 269 SGG------------KLLEYS--AHMVPEGGLAMVPQLVNDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAA 334 (429)
T ss_pred cCC------------EEEEEe--eEEcccCCcccCCccccCCeEEEecccccccccCccccchhHHHHHHHHHHHHHHHH
Confidence 000 001111 112343321 245677899999999999998 569999999999999999999999
Q ss_pred HhcCCCcchHHHHHHHHHHhhHH-HHHHHHHHHHHHHhhcCC
Q 010200 432 IAVGADIGEASLLKKYEAERKPA-NIVMMAVLDGFQKAYSVD 472 (515)
Q Consensus 432 ~~~~~~~~~~~al~~Y~~~r~~~-~~~~~~~s~~~~~~~~~~ 472 (515)
+..+ |. +...|+.|++.++.. ..+-+...+.+..+++.+
T Consensus 335 ~~~~-d~-s~~~l~~Y~~~~~~~~~~~~l~~~~~~~~~~~~~ 374 (429)
T PRK10015 335 KERA-DF-SASSLAQYKRELEQSCVMRDMQHFRKIPALMENP 374 (429)
T ss_pred HhcC-CC-ccccHHHHHHHHHHCHHHHHHHHHhChHhhhcCc
Confidence 8765 33 356789999998877 444466677777777665
No 55
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.96 E-value=8.4e-27 Score=239.83 Aligned_cols=343 Identities=16% Similarity=0.168 Sum_probs=201.9
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (515)
..+||+||||||||+++|+.|++. |++|+|+||.+.++.+.+ .+..+....++ .+ +..+...
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~----G~~V~llEr~~~~g~k~~---------~gg~l~~~~~e---~l--~~~~~~~ 65 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLARE----GAQVLVIERGNSAGAKNV---------TGGRLYAHSLE---HI--IPGFADS 65 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhC----CCeEEEEEcCCCCCCccc---------ccceechhhHH---HH--hhhhhhc
Confidence 469999999999999999999996 999999999988754432 12223333322 21 1111110
Q ss_pred ----hccccceEEEEeCCCccceeeeccc-CCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcc
Q 010200 134 ----RHAYFDKMQVWDYTGLGYTKYNARD-VNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSIS 208 (515)
Q Consensus 134 ----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~ 208 (515)
.......+.+....+...+.+.... ......++.+.|..|+++|.+.+++.| ++++.+++|++++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~G-v~i~~~~~V~~i~~-------- 136 (428)
T PRK10157 66 APVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAG-AQLITGIRVDNLVQ-------- 136 (428)
T ss_pred CcccceeeeeeEEEEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCC-CEEECCCEEEEEEE--------
Confidence 0001122333333332222222111 112334688999999999999999988 99999999999975
Q ss_pred cCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEE--EEeec----------
Q 010200 209 VDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICT--VEHNK---------- 276 (515)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~--~~~~~---------- 276 (515)
+++.+.....+|.++.||+||+|||.+|.+++.++..... .....++... +..+.
T Consensus 137 ------------~~g~v~~v~~~g~~i~A~~VI~A~G~~s~l~~~lgl~~~~-~~~~~av~~~~~~~~~~~~~~~~~~~~ 203 (428)
T PRK10157 137 ------------RDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRV-KPTDVAVGVKELIELPKSVIEDRFQLQ 203 (428)
T ss_pred ------------eCCEEEEEEcCCcEEECCEEEEEeCCCHHHHHHcCCCCCC-CCcEEEEEEEEEEEcCHHHHHHhhccC
Confidence 2233433335667899999999999999999998765322 2233333222 22211
Q ss_pred -CCceEEEEec-CC----CcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccch
Q 010200 277 -ENYCAWQRFL-PA----GPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMF 350 (515)
Q Consensus 277 -~~~~~~~~~~-~~----g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (515)
+....+.... +. |..|+++ ..+..++.+.+..+... ....+..++++.+.+. +. ..+.+
T Consensus 204 ~~~g~~~~~~g~~~~g~~ggG~~~~-~~~~~svG~~~~~~~~~-~~~~~~~~~l~~~~~~------p~-------v~~~~ 268 (428)
T PRK10157 204 GNQGAACLFAGSPTDGLMGGGFLYT-NENTLSLGLVCGLHHLH-DAKKSVPQMLEDFKQH------PA-------VAPLI 268 (428)
T ss_pred CCCCeEEEEEECCCCCCcCceeEEE-cCCeEEEEEEEehHHhc-ccCCCHHHHHHHHHhC------ch-------HHHHh
Confidence 0111222211 11 1235555 34455555544332211 1123455555554331 00 00111
Q ss_pred hccccCccccccccccCCcceEEeccceeeecccc-ccccccccCcEEEEcccccccCC--ccccchhhcHHHHHHHHHH
Q 010200 351 SWFRGDATLSAKECFEVPPRVVKLASERMVFPLSL-KHANNYVSKRVVLIGDAAHTVHP--LAGQGVNLGFGDASTLSRI 427 (515)
Q Consensus 351 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~-~~~~~~~~~~v~lvGDAAh~~~P--~~G~G~n~al~da~~La~~ 427 (515)
.+ .. ..+ -.....|... ...++...+++++|||||..++| ++|+|++.|+.++..+|++
T Consensus 269 ~~----~~------------~~~--~~~~~ip~~g~~~~~~~~~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAea 330 (428)
T PRK10157 269 AG----GK------------LVE--YSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKT 330 (428)
T ss_pred CC----Ce------------EHH--HHhhHhhcCCcccCCceecCCeEEEecccccccccCceeeeHHHHHHHHHHHHHH
Confidence 11 00 000 0000122221 12355677999999999999998 6999999999999999999
Q ss_pred HHHhHhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC
Q 010200 428 IAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSV 471 (515)
Q Consensus 428 l~~~~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~ 471 (515)
+.+++..++ . +...|..|++..+...-+-+...+.+..++..
T Consensus 331 i~~a~~~~~-~-s~~~l~~Y~~~l~~~~~~~l~~~~~~~~~~~~ 372 (428)
T PRK10157 331 VLSAMKSDD-F-SKQKLAEYRQHLESGPLRDMRMYQKLPAFLDN 372 (428)
T ss_pred HHHHHhcCC-c-chhhHHHHHHHHHHhHHHHHHHHhccHHHhcC
Confidence 999987653 2 46689999998777654555555555555544
No 56
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.95 E-value=1.4e-25 Score=231.01 Aligned_cols=340 Identities=18% Similarity=0.226 Sum_probs=213.0
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchh--hhhhh
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQY--VQQHR 134 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~--~~~~~ 134 (515)
||+|||||+||.++|..|++..- ..++|+|+|+...+. .+-|....|....+++.+|+.+. +.+..
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~-~~~~v~lie~~~~~~-----------~~vGe~~~p~~~~~~~~lgi~e~~~~~~~~ 68 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGP-DALSVTLIESPDIPR-----------IGVGESTLPSLRPFLRRLGIDEADFMRACD 68 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCT-CSSEEEEEE-SSS--------------SSEEE--THHHHCHHHHT--HHHHCHHCT
T ss_pred CEEEECCCHHHHHHHHHHHHhCC-CCcEEEEEecCCCCC-----------CCccccchHHHHHHHHHcCCChHHHHHHhC
Confidence 79999999999999999999621 018999999998763 33478888998899999999876 55544
Q ss_pred ccccceEEEEeCCC-ccceeeeccc------------------------------------------------CCCCcce
Q 010200 135 HAYFDKMQVWDYTG-LGYTKYNARD------------------------------------------------VNKEILG 165 (515)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~~~~~~~------------------------------------------------~~~~~~~ 165 (515)
.....++.+.+... ......+... .....++
T Consensus 69 ~~~k~g~~f~~w~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 148 (454)
T PF04820_consen 69 ATFKLGIRFVNWGERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYA 148 (454)
T ss_dssp -EEESEEEEESSSSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-E
T ss_pred CeEeccEEeeecCCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCee
Confidence 44455566643221 1111111110 0113467
Q ss_pred EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecC
Q 010200 166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADG 245 (515)
Q Consensus 166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG 245 (515)
|.++|..+.+.|++.+.+.| |+++.+ +|+++.. ++++....|+.++|.++.||+||+|+|
T Consensus 149 yhlDR~~fd~~L~~~A~~~G-v~~~~g-~V~~v~~------------------~~~g~i~~v~~~~g~~i~ad~~IDASG 208 (454)
T PF04820_consen 149 YHLDRAKFDQFLRRHAEERG-VEVIEG-TVVDVEL------------------DEDGRITAVRLDDGRTIEADFFIDASG 208 (454)
T ss_dssp EEEEHHHHHHHHHHHHHHTT--EEEET--EEEEEE-------------------TTSEEEEEEETTSEEEEESEEEE-SG
T ss_pred EEEeHHHHHHHHHHHHhcCC-CEEEeC-EEEEEEE------------------cCCCCEEEEEECCCCEEEEeEEEECCC
Confidence 99999999999999999998 999988 5888876 112234578888999999999999999
Q ss_pred CCchhhhhc-CCccccccCC---ceEEEEEEEeec-CCceEEEEecCCCcEEEEecCCCceEEEEEcCCCChHHhhcCCH
Q 010200 246 GKSRVRELA-GFKTTGWSYS---QNAIICTVEHNK-ENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNE 320 (515)
Q Consensus 246 ~~S~vr~~l-~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (515)
..|.+.+.. +......... ..++...++... ..........+.||+|.+|+.++..+ .+.+..... ++
T Consensus 209 ~~s~L~~~~L~~~~~~~~~~L~~d~av~~~~~~~~~~~~~T~~~a~~~GW~W~IPL~~~~~~-G~V~s~~~~------s~ 281 (454)
T PF04820_consen 209 RRSLLARKALKVGFRDWSDWLPNDRAVAVQVPNEDPPEPYTRSTAFEAGWIWYIPLQNRRGS-GYVYSSDFI------SD 281 (454)
T ss_dssp GG-CCCCCCT-EEEEEETTTCEEEEEEEEEEE-SSCTTSSEEEEEESSEEEEEEEESSEEEE-EEEEETTTS------HH
T ss_pred ccchhhHhhhcCCCccccccccccEEEEEecCcCCCCCCceeEEecCCceEEEccCCCcceE-EEEeccccC------CH
Confidence 999987773 3332222221 234444444443 22444455668999999999998777 333333222 34
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcceEEeccceeeeccccccccccccCcEEEEc
Q 010200 321 DDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIG 400 (515)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvG 400 (515)
+.....+.+.+.. ... ..+ . ..++......+...+|+++||
T Consensus 282 ~~A~~~l~~~l~~----~~~-------------------------~~~-~---------~i~~~~g~~~~~~~~n~vavG 322 (454)
T PF04820_consen 282 DEAEAELLAYLGG----SPE-------------------------AEP-R---------HIRFRSGRRKQFWGKNCVAVG 322 (454)
T ss_dssp HHHHHHHHHHHTC----HCT-------------------------TSC-E---------EEE-S-EEESSSEETTEEE-C
T ss_pred HHHHHHHHHhcch----hhh-------------------------cch-h---------hhcccccchhhcccCCEEEEc
Confidence 4445555554430 000 000 1 122222224455578899999
Q ss_pred ccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC-CCChHHHH
Q 010200 401 DAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSV-DFGPLNIL 479 (515)
Q Consensus 401 DAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~-~~~~~~~~ 479 (515)
|||++++|+.++|+.+++..+..|++.|... +. ...+++.|++........+.++....+.+... +++++...
T Consensus 323 dAAgFiDPL~StGI~la~~aa~~l~~~l~~~-----~~-~~~~~~~Yn~~~~~~~~~~~~fi~~hY~~~~r~ds~FW~~~ 396 (454)
T PF04820_consen 323 DAAGFIDPLESTGIHLALSAAEALAEALPDD-----DF-SPAALDRYNRRMRREYERIRDFISLHYQLSRRRDSPFWRAR 396 (454)
T ss_dssp CCTEE--GGGSHHHHHHHHHHHHHHHTHHCT-----TC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHS-SSHHHHHH
T ss_pred chhhccCccccccHHHHHHHHHHHHHhcccC-----CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCHHHHhc
Confidence 9999999999999999999888888877652 22 26789999999999999998888887776444 34555544
Q ss_pred H
Q 010200 480 R 480 (515)
Q Consensus 480 r 480 (515)
|
T Consensus 397 ~ 397 (454)
T PF04820_consen 397 R 397 (454)
T ss_dssp C
T ss_pred c
Confidence 4
No 57
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.94 E-value=2.7e-24 Score=219.80 Aligned_cols=304 Identities=20% Similarity=0.234 Sum_probs=185.2
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhcc
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHA 136 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~ 136 (515)
||+||||||||+++|+.|++. |++|+|+|+.+..+. .....++... ++.+++.+.+ ..
T Consensus 1 DviIiGaG~AGl~~A~~la~~----g~~v~liE~~~~~~~-----------~~~~~~~~~~---~~~~~~~~~~-~~--- 58 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARP----GLRVQLIEPHPPIPG-----------NHTYGVWDDD---LSDLGLADCV-EH--- 58 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhC----CCeEEEEccCCCCCC-----------CccccccHhh---hhhhchhhHH-hh---
Confidence 799999999999999999996 999999999875420 1122333322 3344432222 11
Q ss_pred ccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcc
Q 010200 137 YFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSAT 216 (515)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~ 216 (515)
.+.....+..... ... .......+++..|.+.|.+.+.+.| ++++ ..+|++++.
T Consensus 59 ~~~~~~~~~~~~~-~~~-------~~~~~~~i~~~~l~~~l~~~~~~~g-v~~~-~~~v~~i~~---------------- 112 (388)
T TIGR01790 59 VWPDVYEYRFPKQ-PRK-------LGTAYGSVDSTRLHEELLQKCPEGG-VLWL-ERKAIHAEA---------------- 112 (388)
T ss_pred cCCCceEEecCCc-chh-------cCCceeEEcHHHHHHHHHHHHHhcC-cEEE-ccEEEEEEe----------------
Confidence 2222111111110 001 1122246999999999999998887 8886 558888865
Q ss_pred cccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecC----CceEEEEec-C----
Q 010200 217 TLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKE----NYCAWQRFL-P---- 287 (515)
Q Consensus 217 ~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~---- 287 (515)
+....+.+.+++|.+++|++||+|||.+|.+++........ + +.+....+....+ ....+..+. .
T Consensus 113 ---~~~~~~~v~~~~g~~~~a~~VI~A~G~~s~~~~~~~~~~~~--~-q~~~G~~~~~~~~~~~~~~~~~~d~~~~~~~~ 186 (388)
T TIGR01790 113 ---DGVALSTVYCAGGQRIQARLVIDARGFGPLVQYVRFPLNVG--F-QVAYGVEARLSRPPHGPSSMVIMDARVDQLAA 186 (388)
T ss_pred ---cCCceeEEEeCCCCEEEeCEEEECCCCchhcccccCCCCce--E-EEEEEEEEEEcCCCCCCCceEEEecccccccc
Confidence 11355778888888899999999999999765433111111 1 1222223333211 111222211 1
Q ss_pred -----CC--cEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcC-CCCCCCCCCCCCcccchhccccCccc
Q 010200 288 -----AG--PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDY-GYGPHPKSISSGSVDMFSWFRGDATL 359 (515)
Q Consensus 288 -----~g--~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (515)
.+ ++|++|.+++...+....... ....+.+.+.+.+.+.+.. +|...
T Consensus 187 ~~~~~~~~~f~~~lP~~~~~~~v~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~--------------------- 241 (388)
T TIGR01790 187 PELKGYRPTFLYAMPLGSTRVFIEETSLAD----RPALPRDRLRQRILARLNAQGWQIK--------------------- 241 (388)
T ss_pred ccccCCCCceEEEeecCCCeEEEEeccccC----CCCCCHHHHHHHHHHHHHHcCCeee---------------------
Confidence 12 789999988776554322111 1124556666666664430 11100
Q ss_pred cccccccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcc
Q 010200 360 SAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIG 439 (515)
Q Consensus 360 ~~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~ 439 (515)
.+. ..+...+|+.... .+..+++++||||||.++|.+|+|++.|+++|..|++.|.+++..+
T Consensus 242 ----------~i~--~~~~~~iP~~~~~--~~~~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~~---- 303 (388)
T TIGR01790 242 ----------TIE--EEEWGALPVGLPG--PFLPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQS---- 303 (388)
T ss_pred ----------EEE--eeeeEEEecccCC--CccCCCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhccC----
Confidence 011 1122345664432 2367899999999999999999999999999999999999987644
Q ss_pred hHHHHHHHHHHhhHHHHH
Q 010200 440 EASLLKKYEAERKPANIV 457 (515)
Q Consensus 440 ~~~al~~Y~~~r~~~~~~ 457 (515)
...+++.|++.++++..+
T Consensus 304 ~~~~~~~~~~~~~~~~~~ 321 (388)
T TIGR01790 304 SELATAAWDGLWPTERRR 321 (388)
T ss_pred HHHHHHHHHHhchHHHHH
Confidence 367889998776665554
No 58
>PLN02697 lycopene epsilon cyclase
Probab=99.93 E-value=3.9e-23 Score=214.63 Aligned_cols=313 Identities=19% Similarity=0.207 Sum_probs=194.7
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhh
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ 132 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~ 132 (515)
...+||+|||||||||++|+.|++. |++|+|+|+..... ...+++. ..++.+++.+.+..
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~----Gl~V~LIe~~~p~~-------------~n~GvW~---~~l~~lgl~~~i~~ 165 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKL----GLNVGLIGPDLPFT-------------NNYGVWE---DEFKDLGLEDCIEH 165 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhC----CCcEEEecCcccCC-------------Cccccch---hHHHhcCcHHHHHh
Confidence 3458999999999999999999996 99999999863220 0123332 35677787554432
Q ss_pred hhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCC
Q 010200 133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST 212 (515)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~ 212 (515)
.+....++...+.. ... ...+ ..++|..|.+.|.+.+.+.| +++ .+++|++++.
T Consensus 166 ----~w~~~~v~~~~~~~-~~~------~~~Y-g~V~R~~L~~~Ll~~a~~~G-V~~-~~~~V~~I~~------------ 219 (529)
T PLN02697 166 ----VWRDTIVYLDDDKP-IMI------GRAY-GRVSRTLLHEELLRRCVESG-VSY-LSSKVDRITE------------ 219 (529)
T ss_pred ----hcCCcEEEecCCce-eec------cCcc-cEEcHHHHHHHHHHHHHhcC-CEE-EeeEEEEEEE------------
Confidence 22223333322211 111 1111 25899999999999998887 887 5779999875
Q ss_pred CCcccccccCCeeE-EEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccC-CceEEEEEEEeecC-C---ceEEEEec
Q 010200 213 PSATTLFTKGHLAK-LDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSY-SQNAIICTVEHNKE-N---YCAWQRFL 286 (515)
Q Consensus 213 ~~~~~~~~~~~~~~-v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~-~~~~~~~~~~~~~~-~---~~~~~~~~ 286 (515)
.++.+. +.+.+|.++.|++||+|||.+|. +.++........ .+.+....++.... . ...+.-|.
T Consensus 220 --------~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~--rl~~~~~~~~~~~~Q~a~Gi~ve~~~~~~d~~~~vlMD~r 289 (529)
T PLN02697 220 --------ASDGLRLVACEDGRVIPCRLATVASGAASG--RLLQYEVGGPRVCVQTAYGVEVEVENNPYDPSLMVFMDYR 289 (529)
T ss_pred --------cCCcEEEEEEcCCcEEECCEEEECCCcChh--hhhccccCCCCcccEEEEEEEEEecCCCCCcchheeeccc
Confidence 223333 45567888999999999999993 233222111112 22333334444321 1 11111111
Q ss_pred -------------CCCcEEEEecCCCceEEEEE-c-CCCChHHhhcCCHHHHHHHHHHhhcC-CCCCCCCCCCCCcccch
Q 010200 287 -------------PAGPIALLPIGDNFSNIVWT-M-NPKDASDCKSMNEDDFVKILNHALDY-GYGPHPKSISSGSVDMF 350 (515)
Q Consensus 287 -------------~~g~~~~~p~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 350 (515)
..+++|++|++++..++-.. + ..+ ..+.+.+.+.+.+++.. +|..
T Consensus 290 ~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T~l~~~~------~l~~~~l~~~L~~~l~~~Gi~~------------- 350 (529)
T PLN02697 290 DYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEETCLASKD------AMPFDLLKKRLMSRLETMGIRI------------- 350 (529)
T ss_pred cccccccccccCCCceEEEEeecCCCeEEEEEeeeccCC------CCCHHHHHHHHHHHHHhCCCCc-------------
Confidence 12478999999988777332 2 211 13345566666665531 1110
Q ss_pred hccccCccccccccccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHH
Q 010200 351 SWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAE 430 (515)
Q Consensus 351 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~ 430 (515)
.++ ...+...+|+.. ..+.. .++++++||||+.++|.+|.|+..++.+|..+|+.|.+
T Consensus 351 ------------------~~i--~~~E~g~iPm~g-~~~~~-~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~ 408 (529)
T PLN02697 351 ------------------LKT--YEEEWSYIPVGG-SLPNT-EQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIAR 408 (529)
T ss_pred ------------------ceE--EEEEeeeecCCC-CCccc-CCCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHH
Confidence 001 122233466643 33333 67899999999999999999999999999999999999
Q ss_pred hHhcCCC-------cchHHHHHHHHHHhhHHHHHHHHHH
Q 010200 431 GIAVGAD-------IGEASLLKKYEAERKPANIVMMAVL 462 (515)
Q Consensus 431 ~~~~~~~-------~~~~~al~~Y~~~r~~~~~~~~~~s 462 (515)
.++.+.+ -....+++.|+..|.....+....-
T Consensus 409 ~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e~~r~~~~~ 447 (529)
T PLN02697 409 ILKNVSSGGKLGTSNSSNISMQAWNTLWPQERKRQRAFF 447 (529)
T ss_pred HhhCCccccccccccchHHHHHHHHHhChHHHHHHHHHH
Confidence 9986631 1346789999998877665554433
No 59
>PLN02463 lycopene beta cyclase
Probab=99.91 E-value=1.3e-21 Score=200.36 Aligned_cols=288 Identities=20% Similarity=0.207 Sum_probs=179.3
Q ss_pred CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhh
Q 010200 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ 131 (515)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~ 131 (515)
....+||+||||||||+++|+.|++. |++|+|+|+.+... ..+..+++ .+.++.+|+.+.+.
T Consensus 25 ~~~~~DVvIVGaGpAGLalA~~La~~----Gl~V~liE~~~~~~-----------~p~~~g~w---~~~l~~lgl~~~l~ 86 (447)
T PLN02463 25 KSRVVDLVVVGGGPAGLAVAQQVSEA----GLSVCCIDPSPLSI-----------WPNNYGVW---VDEFEALGLLDCLD 86 (447)
T ss_pred cccCceEEEECCCHHHHHHHHHHHHC----CCeEEEeccCccch-----------hccccchH---HHHHHHCCcHHHHH
Confidence 34569999999999999999999996 99999999976431 01112222 34677788876654
Q ss_pred hhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCC
Q 010200 132 QHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS 211 (515)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~ 211 (515)
.. . ....++...... .. ....+ ..++|.+|.+.|.+++.+.| ++++ ..+|++++.
T Consensus 87 ~~-w---~~~~v~~~~~~~-~~------~~~~y-~~V~R~~L~~~Ll~~~~~~G-V~~~-~~~V~~I~~----------- 141 (447)
T PLN02463 87 TT-W---PGAVVYIDDGKK-KD------LDRPY-GRVNRKKLKSKMLERCIANG-VQFH-QAKVKKVVH----------- 141 (447)
T ss_pred hh-C---CCcEEEEeCCCC-cc------ccCcc-eeEEHHHHHHHHHHHHhhcC-CEEE-eeEEEEEEE-----------
Confidence 42 1 222222221111 00 11122 35899999999999998887 8887 469999976
Q ss_pred CCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCc-eEEEEEEEeecCC---c-eEEEEe-
Q 010200 212 TPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQ-NAIICTVEHNKEN---Y-CAWQRF- 285 (515)
Q Consensus 212 ~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~-~~~~~~~~~~~~~---~-~~~~~~- 285 (515)
.+..+.|.+++|.++.||+||+|||.+|++++.-. . ..... .++...+....+. + ..+..|
T Consensus 142 ---------~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l~~~~~---~-~~~g~Q~a~Gi~~ev~~~p~d~~~~vlMD~r 208 (447)
T PLN02463 142 ---------EESKSLVVCDDGVKIQASLVLDATGFSRCLVQYDK---P-FNPGYQVAYGILAEVDSHPFDLDKMLFMDWR 208 (447)
T ss_pred ---------cCCeEEEEECCCCEEEcCEEEECcCCCcCccCCCC---C-CCccceeeeeEEeecCCCCcccccchhhhcC
Confidence 33557888889989999999999999999864321 1 11121 1222222222111 1 100000
Q ss_pred ----c-----------CCCcEEEEecCCCceEEEEEc--CCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCccc
Q 010200 286 ----L-----------PAGPIALLPIGDNFSNIVWTM--NPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVD 348 (515)
Q Consensus 286 ----~-----------~~g~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (515)
. -.+++|++|++++...+-... ... ..+.+...+.+.+++. .++-.
T Consensus 209 ~~~~~~~~~~~~~~~~~p~FlY~~P~~~~~~~vEeT~l~s~~------~~~~~~lk~~L~~~l~-~~Gi~---------- 271 (447)
T PLN02463 209 DSHLGNNPELRARNSKLPTFLYAMPFSSNRIFLEETSLVARP------GLPMDDIQERMVARLR-HLGIK---------- 271 (447)
T ss_pred hhhccccchhhhccCCCCceEEEEecCCCeEEEEeeeeecCC------CCCHHHHHHHHHHHHH-HCCCC----------
Confidence 0 035789999998875544331 111 1234555555555443 11100
Q ss_pred chhccccCccccccccccCCcceEEe-ccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHH
Q 010200 349 MFSWFRGDATLSAKECFEVPPRVVKL-ASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRI 427 (515)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~ 427 (515)
+.++ ..+...+|+... .+ ...++++++||||+.++|.+|.|+..++..|..+|++
T Consensus 272 ----------------------~~~i~~~E~~~IPmg~~-~~-~~~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~ 327 (447)
T PLN02463 272 ----------------------VKSVEEDEKCVIPMGGP-LP-VIPQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADA 327 (447)
T ss_pred ----------------------cceeeeeeeeEeeCCCC-CC-CCCCCEEEecchhcCcCCCccccHHHHHHHHHHHHHH
Confidence 0011 112223566432 22 2357899999999999999999999999999999999
Q ss_pred HHHhHhcCC
Q 010200 428 IAEGIAVGA 436 (515)
Q Consensus 428 l~~~~~~~~ 436 (515)
+.++++.+.
T Consensus 328 ~~~~~~~~~ 336 (447)
T PLN02463 328 IVEYLGSSR 336 (447)
T ss_pred HHHHHhcCC
Confidence 999998654
No 60
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.88 E-value=2.2e-20 Score=188.18 Aligned_cols=303 Identities=16% Similarity=0.153 Sum_probs=171.5
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhcc
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHA 136 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~ 136 (515)
||+|||||+||+++|+.|++.- +|++|+|+|+.+.... . +...++.....-... ...+.+...
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~--~g~~V~lle~~~~~~~---------~--~tw~~~~~~~~~~~~-~~~~~~v~~--- 63 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRAR--PDFRIRVIEAGRTIGG---------N--HTWSFFDSDLSDAQH-AWLADLVQT--- 63 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcC--CCCeEEEEeCCCCCCC---------c--ccceecccccchhhh-hhhhhhheE---
Confidence 8999999999999999999830 3899999999874420 0 111111111100000 001111111
Q ss_pred ccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcc
Q 010200 137 YFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSAT 216 (515)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~ 216 (515)
......++..... ..+ ...-..+++.+|.+.|.+.+.. .++.+++|+++..
T Consensus 64 ~W~~~~v~~~~~~--~~l-------~~~Y~~I~r~~f~~~l~~~l~~----~i~~~~~V~~v~~---------------- 114 (370)
T TIGR01789 64 DWPGYEVRFPKYR--RKL-------KTAYRSMTSTRFHEGLLQAFPE----GVILGRKAVGLDA---------------- 114 (370)
T ss_pred eCCCCEEECcchh--hhc-------CCCceEEEHHHHHHHHHHhhcc----cEEecCEEEEEeC----------------
Confidence 2333344332111 111 1122579999999999877642 2677889998843
Q ss_pred cccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC---ceEEEEe-c--CC--
Q 010200 217 TLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN---YCAWQRF-L--PA-- 288 (515)
Q Consensus 217 ~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~--~~-- 288 (515)
+.+++ .+|.++.||+||+|+|.+|.-.... .-++++...++...+. ......+ . .+
T Consensus 115 ------~~v~l--~dg~~~~A~~VI~A~G~~s~~~~~~--------~~Q~f~G~~~r~~~p~~~~~~~lMD~~~~q~~g~ 178 (370)
T TIGR01789 115 ------DGVDL--APGTRINARSVIDCRGFKPSAHLKG--------GFQVFLGREMRLQEPHGLENPIIMDATVDQLAGY 178 (370)
T ss_pred ------CEEEE--CCCCEEEeeEEEECCCCCCCccccc--------eeeEEEEEEEEEcCCCCCCccEEEeeeccCCCCc
Confidence 33555 6888999999999999997521111 1123333333333322 1111111 1 12
Q ss_pred CcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhc-CCCCCCCCCCCCCcccchhccccCccccccccccC
Q 010200 289 GPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALD-YGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEV 367 (515)
Q Consensus 289 g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 367 (515)
.+++++|++++...+-.....+. ...+.+.+...+..... .+|..
T Consensus 179 ~F~Y~lP~~~~~~lvE~T~~s~~----~~l~~~~l~~~l~~~~~~~g~~~------------------------------ 224 (370)
T TIGR01789 179 RFVYVLPLGSHDLLIEDTYYADD----PLLDRNALSQRIDQYARANGWQN------------------------------ 224 (370)
T ss_pred eEEEECcCCCCeEEEEEEeccCC----CCCCHHHHHHHHHHHHHHhCCCc------------------------------
Confidence 35667899888866644332221 12455666555555432 01110
Q ss_pred CcceEEeccceeeeccccc-c-ccccc-cCcEEEEcccccccCCccccchhhcHHHHHHHHHHHH-HhHhcCCCcchHHH
Q 010200 368 PPRVVKLASERMVFPLSLK-H-ANNYV-SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIA-EGIAVGADIGEASL 443 (515)
Q Consensus 368 ~~~~~~~~~~~~~~p~~~~-~-~~~~~-~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~-~~~~~~~~~~~~~a 443 (515)
.+++.. +...+|+... . ...|. .++|+++|||||.++|.+|+|++.+++||..|++.+. + +.+. ..+
T Consensus 225 -~~i~~~--e~g~iPm~~~~~~~~~~~~~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~la~~~~~~----~~~~--~~~ 295 (370)
T TIGR01789 225 -GTPVRH--EQGVLPVLLGGDFSAYQDEVRIVAIAGLRAGLTHPTTGYSLPVAVENADALAAQPDLS----SEQL--AAF 295 (370)
T ss_pred -eEEEEe--eeeEEeeecCCCcccccccCCceeeeecccccccccccccHHHHHHHHHHHHhccCcC----ccch--hhh
Confidence 011222 2235676442 1 11222 4569999999999999999999999999999999885 2 1122 345
Q ss_pred HHHHHHHhhHHHHHHHHHHHH
Q 010200 444 LKKYEAERKPANIVMMAVLDG 464 (515)
Q Consensus 444 l~~Y~~~r~~~~~~~~~~s~~ 464 (515)
+..|...|.++.......-+.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~ 316 (370)
T TIGR01789 296 IDSRARRHWSKTGYYRLLNRM 316 (370)
T ss_pred hhHHHHHHHHHhHHHHHHHHH
Confidence 788888877776644443333
No 61
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.85 E-value=1e-18 Score=176.91 Aligned_cols=277 Identities=23% Similarity=0.282 Sum_probs=175.0
Q ss_pred cEEEECCCHHHHHHHHHH--hcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200 57 DVAVVGGGMVGMALACSL--ASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L--~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (515)
|||||||||||+++|+.| ++ .|.+|+|+|+.+.... ...+..+++... ++.++.+...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~----~g~~Vllid~~~~~~~---------~~~~tW~~~~~~------~~~~~~~v~~- 60 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADAR----PGLSVLLIDPKPKPPW---------PNDRTWCFWEKD------LGPLDSLVSH- 60 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcC----CCCEEEEEcCCccccc---------cCCccccccccc------ccchHHHHhe-
Confidence 899999999999999999 65 4999999999876510 011111221111 1112333332
Q ss_pred ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (515)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~ 214 (515)
.+....++......... ....+.+++..|.+.|.+.+. .+ ..++.+.+|++++.
T Consensus 61 --~w~~~~v~~~~~~~~~~--------~~~Y~~i~~~~f~~~l~~~~~-~~-~~~~~~~~V~~i~~-------------- 114 (374)
T PF05834_consen 61 --RWSGWRVYFPDGSRILI--------DYPYCMIDRADFYEFLLERAA-AG-GVIRLNARVTSIEE-------------- 114 (374)
T ss_pred --ecCceEEEeCCCceEEc--------ccceEEEEHHHHHHHHHHHhh-hC-CeEEEccEEEEEEe--------------
Confidence 23445555443322111 122357999999999999999 44 35677889999976
Q ss_pred cccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC----ceEEEEe-----
Q 010200 215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN----YCAWQRF----- 285 (515)
Q Consensus 215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~----- 285 (515)
.+..+.+...+|.+++|++||+|+|..+..-+..+ -++++...++.+.+. ...+..+
T Consensus 115 ------~~~~~~v~~~~g~~i~a~~VvDa~g~~~~~~~~~~--------~Q~f~G~~v~~~~~~f~~~~~~lMD~r~~~~ 180 (374)
T PF05834_consen 115 ------TGDGVLVVLADGRTIRARVVVDARGPSSPKARPLG--------LQHFYGWEVETDEPVFDPDTATLMDFRVPQS 180 (374)
T ss_pred ------cCceEEEEECCCCEEEeeEEEECCCcccccccccc--------cceeEEEEEeccCCCCCCCceEEEEecccCC
Confidence 44467888899999999999999997776211111 134444445554431 1222222
Q ss_pred -cCCCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcC-CCCCCCCCCCCCcccchhccccCccccccc
Q 010200 286 -LPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDY-GYGPHPKSISSGSVDMFSWFRGDATLSAKE 363 (515)
Q Consensus 286 -~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (515)
.+..++|++|++++...+-..+..... ..+.+.+.+.+.+.+.. ++...
T Consensus 181 ~~~~~F~Y~lP~~~~~alvE~T~fs~~~----~~~~~~~~~~l~~~l~~~g~~~~------------------------- 231 (374)
T PF05834_consen 181 ADGPSFLYVLPFSEDRALVEETSFSPRP----ALPEEELKARLRRYLERLGIDDY------------------------- 231 (374)
T ss_pred CCCceEEEEEEcCCCeEEEEEEEEcCCC----CCCHHHHHHHHHHHHHHcCCCce-------------------------
Confidence 233678999999988777544433221 14456666666665541 11100
Q ss_pred cccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHH
Q 010200 364 CFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAE 430 (515)
Q Consensus 364 ~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~ 430 (515)
++ ...+...+|+......+...++++.+|+|++.++|.+|.++..++..|..+|+.|.+
T Consensus 232 ------~i--~~~E~G~IPm~~~~~~~~~~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~ 290 (374)
T PF05834_consen 232 ------EI--LEEERGVIPMTTGGFPPRFGQRVIRIGTAGGMVKPSTGYSFARIQRQADAIADALAK 290 (374)
T ss_pred ------eE--EEeecceeecccCCCccccCCCeeeEEccccCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence 01 122333478754444444466799999999999999999999999999999999987
No 62
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=99.81 E-value=9.1e-19 Score=163.34 Aligned_cols=244 Identities=21% Similarity=0.222 Sum_probs=169.0
Q ss_pred eeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEee-cCC-ceEEEEecCCCcEEEEecCCCceEEEEEcCCCChHH
Q 010200 237 AKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHN-KEN-YCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASD 314 (515)
Q Consensus 237 ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~ 314 (515)
|+++|.|||..|.+|+.+. .. ......+++...+... .+. ..-+..+.+.+++.+++++.+..++.+-++.+....
T Consensus 2 A~LtivaDG~~S~fRk~l~-~~-~~~v~S~fvGl~l~~~~lp~~~~ghvil~~~~pil~YqI~~~etR~Lvdvp~~k~P~ 79 (276)
T PF08491_consen 2 APLTIVADGCFSKFRKELS-DN-KPQVRSYFVGLILKDAPLPKPNHGHVILGKPGPILLYQISSNETRVLVDVPGPKLPS 79 (276)
T ss_pred CCEEEEecCCchHHHHhhc-CC-CCceeeeEEEEEEcCCCCCCCCceEEEEcCCCcEEEEEcCCCceEEEEEeCCCccCC
Confidence 6899999999999999986 21 2222333333333222 222 334445567899999999999999999887663321
Q ss_pred hhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcceEEeccceeeeccccccccccccC
Q 010200 315 CKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSK 394 (515)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~ 394 (515)
.+..++.+.+++...+...+. ..+.+...+... .....|....+.......
T Consensus 80 ---~~~g~l~~yl~~~v~P~LP~~-------lr~~f~~al~~~-------------------rirsMPn~~lp~~~~~~~ 130 (276)
T PF08491_consen 80 ---VSNGELKEYLREVVAPQLPEE-------LRPSFEKALEDG-------------------RIRSMPNSFLPASPNWKP 130 (276)
T ss_pred ---ccchHHHHHHHHHHHhhchHH-------HHHHHHHHhccC-------------------CcceecccccCCCCCCCC
Confidence 223344444444222111111 111111111110 111244444444444557
Q ss_pred cEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCC
Q 010200 395 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFG 474 (515)
Q Consensus 395 ~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~ 474 (515)
+++++|||+++.+|.+|+||+.|+.||..|++.|.....=.++....+++++|+.+|++....+.-.+..++.+|..++.
T Consensus 131 G~vllGDA~nmrHPLTGgGMTVAl~Dv~lL~~lL~~~~dl~d~~~v~~~l~~f~~~Rk~~~s~iNiLA~aLY~lF~a~~~ 210 (276)
T PF08491_consen 131 GVVLLGDAANMRHPLTGGGMTVALNDVVLLRDLLSPIPDLSDTKAVLEALKKFHWKRKPLSSVINILAQALYSLFAADDD 210 (276)
T ss_pred CEEEEehhhcCcCCccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCH
Confidence 89999999999999999999999999999999999872111111236799999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcccChhHHHHHHHHhhcCCCCCCCC
Q 010200 475 PLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLPL 511 (515)
Q Consensus 475 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 511 (515)
.+..+|+..|..+..=+......+...+|+...|..+
T Consensus 211 ~l~~Lr~gcf~Yf~~GG~~~~gpv~LLsgl~p~P~~L 247 (276)
T PF08491_consen 211 YLKALRQGCFKYFQLGGECVSGPVALLSGLNPRPLVL 247 (276)
T ss_pred HHHHHHHHHHHHHHcCCCCCcchHHHhccCCCCcHHH
Confidence 9999999999999887778899999999999998643
No 63
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.80 E-value=2.5e-17 Score=157.66 Aligned_cols=371 Identities=14% Similarity=0.111 Sum_probs=224.6
Q ss_pred CCCCCccEEEECCCHHHHHHHHHHhcCCCC--CCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCch
Q 010200 51 NNDDQYDVAVVGGGMVGMALACSLASMPLT--KHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQ 128 (515)
Q Consensus 51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~--~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~ 128 (515)
.....+||+|||||||||++|+.|+|.... ..++|+|+||...++ .....|..+.|.+++.| +--|.
T Consensus 72 R~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~G---------ghtlSGaviep~aldEL--~P~wk 140 (621)
T KOG2415|consen 72 RESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVG---------GHTLSGAVIEPGALDEL--LPDWK 140 (621)
T ss_pred hhhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccC---------Cceecceeeccchhhhh--Ccchh
Confidence 345679999999999999999999874111 358999999999884 23344666777665533 12222
Q ss_pred hhhhhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcc
Q 010200 129 YVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSIS 208 (515)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~ 208 (515)
+.-.....++..-.++.-.+...+..+....-.....|.++-..++++|-+.+++.| ++|+.+..+.++.++++.++++
T Consensus 141 e~~apl~t~vT~d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~G-vEiyPg~aaSevly~edgsVkG 219 (621)
T KOG2415|consen 141 EDGAPLNTPVTSDKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELG-VEIYPGFAASEVLYDEDGSVKG 219 (621)
T ss_pred hcCCcccccccccceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhC-ceeccccchhheeEcCCCcEee
Confidence 222222223333333333344444444321112233589999999999999999999 9999999999999999999999
Q ss_pred cCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhc----CCc--cccccC--CceEEEEEEEeecCCce
Q 010200 209 VDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELA----GFK--TTGWSY--SQNAIICTVEHNKENYC 280 (515)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l----~~~--~~~~~~--~~~~~~~~~~~~~~~~~ 280 (515)
+...+-| +.+.+..+-.|+.|-+++++..|.|+|.++.+.+++ ++. .+...| +..-+|-.-+.......
T Consensus 220 iaT~D~G---I~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qtYglGlKEvWei~~~~~~pG~ 296 (621)
T KOG2415|consen 220 IATNDVG---ISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQTYGLGLKEVWEIDPENHNPGE 296 (621)
T ss_pred Eeecccc---ccCCCCccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcceeccccceeEecChhhcCCcc
Confidence 8887777 556677888899999999999999999999988775 222 122222 23333333332222223
Q ss_pred EEEEec------CCCcEEEEecCCCceEEEEEcCCCChHHhhcCCH-HHHHHHHHHhhcCCCCCCCCCCCCCcccchhcc
Q 010200 281 AWQRFL------PAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNE-DDFVKILNHALDYGYGPHPKSISSGSVDMFSWF 353 (515)
Q Consensus 281 ~~~~~~------~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (515)
..+.+. .-|-.+++.+.+....+.+.+.-+-... .+++ .+|.+ |..+|. ++..
T Consensus 297 v~HT~GwPl~~~tYGGsFlYh~~d~~VavGlVVgLdY~NP--~lsP~~EFQk---------~K~hP~---------i~~v 356 (621)
T KOG2415|consen 297 VAHTLGWPLDNDTYGGSFLYHFNDPLVAVGLVVGLDYKNP--YLSPYKEFQK---------MKHHPS---------ISKV 356 (621)
T ss_pred eeeeccCcccCCccCceeEEEcCCCeEEEEEEEEecCCCC--CCCHHHHHHH---------hhcCcc---------hhhh
Confidence 322221 1133455666777766665543222110 1122 22221 111111 1111
Q ss_pred ccCccccccccccCCcceEEeccceeeeccccc---cccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHH
Q 010200 354 RGDATLSAKECFEVPPRVVKLASERMVFPLSLK---HANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAE 430 (515)
Q Consensus 354 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~---~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~ 430 (515)
+..... +... +..+... ..+...-++-+|||=+|++++----.|...||.++...|+.+-+
T Consensus 357 leGgk~------------i~Yg----ARaLNEGGfQsiPkl~FPGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ 420 (621)
T KOG2415|consen 357 LEGGKR------------IAYG----ARALNEGGFQSIPKLVFPGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFE 420 (621)
T ss_pred hcCcce------------eeeh----hhhhccCCcccCcccccCCceEeecccccccccccccchhhhhcchhHHHHHHH
Confidence 111100 0000 0011111 12334456779999999999999999999999999999999999
Q ss_pred hHhcCCCcchH-HHHHHHHHHhh-HHHHHHHHHHHHHHHhhcCC
Q 010200 431 GIAVGADIGEA-SLLKKYEAERK-PANIVMMAVLDGFQKAYSVD 472 (515)
Q Consensus 431 ~~~~~~~~~~~-~al~~Y~~~r~-~~~~~~~~~s~~~~~~~~~~ 472 (515)
.++...+.... --+..|++.-+ ..+.+.+-..+.+...|+..
T Consensus 421 ai~~~~~~k~~~~~~~~Ye~nlkds~V~KeLysvRNirPsf~~~ 464 (621)
T KOG2415|consen 421 AIKGLPQSKMAGLDPTTYEENLKDSYVWKELYSVRNIRPSFHGK 464 (621)
T ss_pred HHhcCccccccccChhhHHHhhhhhHHHHHHHHhhccCcccccc
Confidence 88655311000 11457877644 44566666666666666644
No 64
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.59 E-value=6.9e-15 Score=142.43 Aligned_cols=163 Identities=21% Similarity=0.275 Sum_probs=104.8
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeC-HhHHHHHHHcCCchhhhh
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVT-PATISFFKEIGAWQYVQQ 132 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~l~~lgl~~~~~~ 132 (515)
+.+||+|||||||||++|+.++++ |.+|+|||+.+.++.+--..+++ ++-..+ ....+++...+-...+..
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~----G~~V~lid~~~k~GrKil~sGgG----rCN~Tn~~~~~~~ls~~p~~~~fl~ 73 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKA----GRRVLLIDKGPKLGRKILMSGGG----RCNFTNSEAPDEFLSRNPGNGHFLK 73 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhc----CCEEEEEecCccccceeEecCCC----CccccccccHHHHHHhCCCcchHHH
Confidence 468999999999999999999996 99999999999987654321211 111111 112334444431111111
Q ss_pred hhccccce---EEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCccc
Q 010200 133 HRHAYFDK---MQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISV 209 (515)
Q Consensus 133 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~ 209 (515)
.....+.. +.++...+..... ...+..+.....-..+.++|+.++++.| |+|+.+++|.+++.
T Consensus 74 sal~~ft~~d~i~~~e~~Gi~~~e----~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~g-V~i~~~~~v~~v~~--------- 139 (408)
T COG2081 74 SALARFTPEDFIDWVEGLGIALKE----EDLGRMFPDSDKASPIVDALLKELEALG-VTIRTRSRVSSVEK--------- 139 (408)
T ss_pred HHHHhCCHHHHHHHHHhcCCeeEE----ccCceecCCccchHHHHHHHHHHHHHcC-cEEEecceEEeEEe---------
Confidence 11111111 1111111111111 1111221122456789999999999998 99999999999987
Q ss_pred CCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200 210 DSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR 249 (515)
Q Consensus 210 ~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~ 249 (515)
.+....+.+.+|+++.||.+|.|+|..|.
T Consensus 140 -----------~~~~f~l~t~~g~~i~~d~lilAtGG~S~ 168 (408)
T COG2081 140 -----------DDSGFRLDTSSGETVKCDSLILATGGKSW 168 (408)
T ss_pred -----------cCceEEEEcCCCCEEEccEEEEecCCcCC
Confidence 44678999999989999999999998775
No 65
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.55 E-value=8.4e-14 Score=132.80 Aligned_cols=147 Identities=20% Similarity=0.196 Sum_probs=99.1
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (515)
..+||+||||||||+++|+.|++. |++|+|+||...++...+. ++ .......+.....++|+++|+.
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~----G~~V~liEk~~~~Ggg~~~--gg-~~~~~~~v~~~~~~~l~~~gv~------ 90 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKA----GLKVAVFERKLSFGGGMWG--GG-MLFNKIVVQEEADEILDEFGIR------ 90 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhC----CCeEEEEecCCCCCCcccc--Cc-cccccccchHHHHHHHHHCCCC------
Confidence 458999999999999999999996 9999999999877432210 00 0001123344455566665541
Q ss_pred hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200 134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP 213 (515)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~ 213 (515)
+.. . ....+.+++..+...|.+.+.+.| ++++.+++|+++..++.
T Consensus 91 ----~~~-----~---------------~~g~~~vd~~~l~~~L~~~A~~~G-v~I~~~t~V~dl~~~~~---------- 135 (257)
T PRK04176 91 ----YKE-----V---------------EDGLYVADSVEAAAKLAAAAIDAG-AKIFNGVSVEDVILRED---------- 135 (257)
T ss_pred ----cee-----e---------------cCcceeccHHHHHHHHHHHHHHcC-CEEEcCceeceeeEeCC----------
Confidence 100 0 001245788999999999999988 99999999999975100
Q ss_pred CcccccccCCeeEEEc---------CCCcEEEeeEEEEecCCCchhhhhc
Q 010200 214 SATTLFTKGHLAKLDL---------SDGTSLYAKLVVGADGGKSRVRELA 254 (515)
Q Consensus 214 ~~~~~~~~~~~~~v~~---------~~g~~~~ad~vV~AdG~~S~vr~~l 254 (515)
+ ...++.+.. .+..++.|++||+|+|.+|.+.+.+
T Consensus 136 -g-----~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l 179 (257)
T PRK04176 136 -P-----RVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVL 179 (257)
T ss_pred -C-----cEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHH
Confidence 0 001122211 1224799999999999999999887
No 66
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.54 E-value=1.2e-13 Score=131.18 Aligned_cols=148 Identities=19% Similarity=0.189 Sum_probs=97.8
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (515)
..+||+||||||+||++|+.|++. |++|+|+||...++...|. ++ .......+.....++++++|+.
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~----G~~V~vlEk~~~~Ggg~~~--gg-~~~~~~~~~~~~~~~l~~~gi~------ 86 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKN----GLKVCVLERSLAFGGGSWG--GG-MLFSKIVVEKPAHEILDEFGIR------ 86 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCCCCccccC--CC-cceecccccchHHHHHHHCCCC------
Confidence 368999999999999999999996 9999999999987543321 00 0001112233344455554431
Q ss_pred hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200 134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP 213 (515)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~ 213 (515)
+ ... ....+..++..+...|.+++.+.| ++++.+++|.++..+++.
T Consensus 87 ----~-----~~~---------------~~g~~~~~~~el~~~L~~~a~e~G-V~I~~~t~V~dli~~~~~--------- 132 (254)
T TIGR00292 87 ----Y-----EDE---------------GDGYVVADSAEFISTLASKALQAG-AKIFNGTSVEDLITRDDT--------- 132 (254)
T ss_pred ----e-----eec---------------cCceEEeeHHHHHHHHHHHHHHcC-CEEECCcEEEEEEEeCCC---------
Confidence 0 000 001134578899999999999998 999999999999761110
Q ss_pred CcccccccCCeeEEEcC---------CCcEEEeeEEEEecCCCchhhhhc
Q 010200 214 SATTLFTKGHLAKLDLS---------DGTSLYAKLVVGADGGKSRVRELA 254 (515)
Q Consensus 214 ~~~~~~~~~~~~~v~~~---------~g~~~~ad~vV~AdG~~S~vr~~l 254 (515)
. ...++.+... +..++.|++||+|+|..|.+.+.+
T Consensus 133 -~-----~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l 176 (254)
T TIGR00292 133 -V-----GVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVC 176 (254)
T ss_pred -C-----ceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHH
Confidence 0 0112222110 234799999999999999988876
No 67
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.50 E-value=5e-12 Score=128.90 Aligned_cols=72 Identities=14% Similarity=0.122 Sum_probs=57.3
Q ss_pred EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecC
Q 010200 166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADG 245 (515)
Q Consensus 166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG 245 (515)
..++...+...|.+.+.+.| ++++.+++|++++. ++..+.|.+.++ ++.+|.||.|+|
T Consensus 140 g~i~p~~~~~~l~~~~~~~g-~~~~~~~~V~~i~~--------------------~~~~~~v~~~~~-~i~a~~vV~aaG 197 (380)
T TIGR01377 140 GVLYAEKALRALQELAEAHG-ATVRDGTKVVEIEP--------------------TELLVTVKTTKG-SYQANKLVVTAG 197 (380)
T ss_pred cEEcHHHHHHHHHHHHHHcC-CEEECCCeEEEEEe--------------------cCCeEEEEeCCC-EEEeCEEEEecC
Confidence 45678899999999998888 99999999999976 334567777666 699999999999
Q ss_pred CC-chhhhhcCCccc
Q 010200 246 GK-SRVRELAGFKTT 259 (515)
Q Consensus 246 ~~-S~vr~~l~~~~~ 259 (515)
.+ +.+++.++...+
T Consensus 198 ~~~~~l~~~~g~~~~ 212 (380)
T TIGR01377 198 AWTSKLLSPLGIEIP 212 (380)
T ss_pred cchHHHhhhcccCCC
Confidence 87 567777765443
No 68
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.45 E-value=2.3e-12 Score=114.28 Aligned_cols=146 Identities=20% Similarity=0.185 Sum_probs=106.3
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (515)
..||+||||||+||++|+.|++. |++|+||||+-.++...| .+..-...+.+...+.++|+++|+..+-..
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~----g~kV~i~E~~ls~GGG~w---~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e-- 100 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKA----GLKVAIFERKLSFGGGIW---GGGMLFNKIVVREEADEILDEFGIRYEEEE-- 100 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhC----CceEEEEEeecccCCccc---ccccccceeeecchHHHHHHHhCCcceecC--
Confidence 47999999999999999999996 999999999999865554 222222345677778889998887211111
Q ss_pred ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (515)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~ 214 (515)
..-+..+...+...|..++.+.| ++|+.++.|.++..+++.
T Consensus 101 ----------------------------~g~~v~ds~e~~skl~~~a~~aG-aki~n~~~veDvi~r~~~---------- 141 (262)
T COG1635 101 ----------------------------DGYYVADSAEFASKLAARALDAG-AKIFNGVSVEDVIVRDDP---------- 141 (262)
T ss_pred ----------------------------CceEEecHHHHHHHHHHHHHhcC-ceeeecceEEEEEEecCC----------
Confidence 11255677888899999999999 999999999999872110
Q ss_pred cccccccCCeeEEEcC---------CCcEEEeeEEEEecCCCchhhhhc
Q 010200 215 ATTLFTKGHLAKLDLS---------DGTSLYAKLVVGADGGKSRVRELA 254 (515)
Q Consensus 215 ~~~~~~~~~~~~v~~~---------~g~~~~ad~vV~AdG~~S~vr~~l 254 (515)
.-.++.+... |--++++++||.|+|....+-+.+
T Consensus 142 ------rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~ 184 (262)
T COG1635 142 ------RVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFL 184 (262)
T ss_pred ------ceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHH
Confidence 1122333321 223799999999999998886665
No 69
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.43 E-value=1.3e-12 Score=116.86 Aligned_cols=147 Identities=21% Similarity=0.214 Sum_probs=96.0
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (515)
..+||+||||||+||++|+.|++. |++|+|||++..++..-| .+......+.+...+..+|+++|+.-. +
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~----g~kV~v~E~~~~~GGg~~---~Gg~lf~~iVVq~~a~~iL~elgi~y~--~- 85 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKA----GLKVAVIERKLSPGGGMW---GGGMLFNKIVVQEEADEILDELGIPYE--E- 85 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHH----TS-EEEEESSSS-BTTTT---S-CTT---EEEETTTHHHHHHHT---E--E-
T ss_pred ccCCEEEECCChhHHHHHHHHHHC----CCeEEEEecCCCCCcccc---ccccccchhhhhhhHHHHHHhCCceeE--E-
Confidence 358999999999999999999996 999999999998865544 122223356778888899998876110 0
Q ss_pred hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200 134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP 213 (515)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~ 213 (515)
.....|..+...+...|..++.+.| ++|+-.+.|.++... ++
T Consensus 86 ---------------------------~~~g~~v~d~~~~~s~L~s~a~~aG-akifn~~~vEDvi~r---------~~- 127 (230)
T PF01946_consen 86 ---------------------------YGDGYYVADSVEFTSTLASKAIDAG-AKIFNLTSVEDVIVR---------ED- 127 (230)
T ss_dssp ----------------------------SSEEEES-HHHHHHHHHHHHHTTT-EEEEETEEEEEEEEE---------CS-
T ss_pred ---------------------------eCCeEEEEcHHHHHHHHHHHHhcCC-CEEEeeeeeeeeEEE---------cC-
Confidence 0112256778889999999998887 999999999998771 10
Q ss_pred CcccccccCCeeEEEcC----CC-----cEEEeeEEEEecCCCchhhhhc
Q 010200 214 SATTLFTKGHLAKLDLS----DG-----TSLYAKLVVGADGGKSRVRELA 254 (515)
Q Consensus 214 ~~~~~~~~~~~~~v~~~----~g-----~~~~ad~vV~AdG~~S~vr~~l 254 (515)
+ .-.++.+... .| -++++++||.|+|..+.+-+.+
T Consensus 128 -~-----rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v~~~~ 171 (230)
T PF01946_consen 128 -D-----RVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEVVRVL 171 (230)
T ss_dssp -C-----EEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSSTSHH
T ss_pred -C-----eEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHHHHHH
Confidence 0 1223333331 22 3799999999999988765544
No 70
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.42 E-value=1.1e-12 Score=132.73 Aligned_cols=152 Identities=19% Similarity=0.213 Sum_probs=81.8
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCC-------CCCCCCCCCCCcEEEeC-----HhHHHHHHH
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS-------NFIKKEDPPDPRVSTVT-----PATISFFKE 123 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~-------~~~~~~~~~~~~~~~l~-----~~~~~~l~~ 123 (515)
|||+|||||||||++|+.|++. |.+|+|+||++.++.+ .|+..+.......+.-. ......|+.
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~----g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~ 76 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEK----GARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKR 76 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHT----T--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHhC----CCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhc
Confidence 7999999999999999999996 9999999999988643 23222211111111110 112234444
Q ss_pred cCCch---hhhhhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEe
Q 010200 124 IGAWQ---YVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMAL 200 (515)
Q Consensus 124 lgl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~ 200 (515)
++..+ -+.+.+. ....... ...|| ..-...++.+.|++.+++.| ++|+++++|.+++.
T Consensus 77 f~~~d~~~ff~~~Gv------~~~~~~~--gr~fP----------~s~~a~~Vv~~L~~~l~~~g-v~i~~~~~V~~i~~ 137 (409)
T PF03486_consen 77 FSPEDLIAFFEELGV------PTKIEED--GRVFP----------KSDKASSVVDALLEELKRLG-VEIHFNTRVKSIEK 137 (409)
T ss_dssp S-HHHHHHHHHHTT--------EEE-ST--TEEEE----------TT--HHHHHHHHHHHHHHHT--EEE-S--EEEEEE
T ss_pred CCHHHHHHHHHhcCC------eEEEcCC--CEECC----------CCCcHHHHHHHHHHHHHHcC-CEEEeCCEeeeeee
Confidence 43211 1111111 1111100 11111 12345789999999999998 99999999999986
Q ss_pred CCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200 201 LPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR 249 (515)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~ 249 (515)
+++..+.|.++++.++.||.||.|+|..|.
T Consensus 138 -------------------~~~~~f~v~~~~~~~~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 138 -------------------KEDGVFGVKTKNGGEYEADAVILATGGKSY 167 (409)
T ss_dssp -------------------ETTEEEEEEETTTEEEEESEEEE----SSS
T ss_pred -------------------cCCceeEeeccCcccccCCEEEEecCCCCc
Confidence 123447888877778999999999998774
No 71
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.38 E-value=3.3e-11 Score=123.97 Aligned_cols=115 Identities=17% Similarity=0.055 Sum_probs=68.5
Q ss_pred EechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCC
Q 010200 167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG 246 (515)
Q Consensus 167 ~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~ 246 (515)
.++...+...|.+.+.+.| ++++.+++|++++.. +++..+.+.+.+| ++.++.||.|.|+
T Consensus 179 ~v~p~~l~~~l~~~a~~~G-v~~~~~~~V~~i~~~------------------~~~~~~~v~t~~g-~i~a~~vVvaagg 238 (407)
T TIGR01373 179 TARHDAVAWGYARGADRRG-VDIIQNCEVTGFIRR------------------DGGRVIGVETTRG-FIGAKKVGVAVAG 238 (407)
T ss_pred cCCHHHHHHHHHHHHHHCC-CEEEeCCEEEEEEEc------------------CCCcEEEEEeCCc-eEECCEEEECCCh
Confidence 3556778888999999988 999999999999640 0123345666677 5899877666666
Q ss_pred Cc-hhhhhcCCccccccCCceEEEEEEEeecCCceEEEEecCCCcEEEEecCCCceEEE
Q 010200 247 KS-RVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFSNIV 304 (515)
Q Consensus 247 ~S-~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~ 304 (515)
++ .+++.++.......+....+. .. ............+...+++.|..++...+.
T Consensus 239 ~~~~l~~~~g~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~y~~p~~~g~~~ig 294 (407)
T TIGR01373 239 HSSVVAAMAGFRLPIESHPLQALV--SE-PLKPIIDTVVMSNAVHFYVSQSDKGELVIG 294 (407)
T ss_pred hhHHHHHHcCCCCCcCcccceEEE--ec-CCCCCcCCeEEeCCCceEEEEcCCceEEEe
Confidence 55 677766665443344332221 11 111111111122445677888777654443
No 72
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.37 E-value=6.3e-11 Score=124.84 Aligned_cols=113 Identities=17% Similarity=0.082 Sum_probs=69.4
Q ss_pred EechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCC----cEEEeeEEEE
Q 010200 167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG----TSLYAKLVVG 242 (515)
Q Consensus 167 ~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g----~~~~ad~vV~ 242 (515)
.++...+...|.+.+.+.| ++++.+++|++++. +++.+.+.+.++ .++.+++||.
T Consensus 151 ~vd~~rl~~~l~~~a~~~G-a~i~~~~~V~~i~~--------------------~~~~~~v~~~~~~g~~~~i~a~~VVn 209 (502)
T PRK13369 151 WVDDARLVVLNALDAAERG-ATILTRTRCVSARR--------------------EGGLWRVETRDADGETRTVRARALVN 209 (502)
T ss_pred eecHHHHHHHHHHHHHHCC-CEEecCcEEEEEEE--------------------cCCEEEEEEEeCCCCEEEEEecEEEE
Confidence 4677889999999999998 99999999999976 334455655443 2699999999
Q ss_pred ecCCCch-hhhhc-CCccccccCCceEEEEEEEeecCCceEEEEecCCCc-EEEEecCCCc
Q 010200 243 ADGGKSR-VRELA-GFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGP-IALLPIGDNF 300 (515)
Q Consensus 243 AdG~~S~-vr~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~p~~~~~ 300 (515)
|+|.|+. +.+.+ +......-....+....++........+....+++. ++++|..++.
T Consensus 210 AaG~wa~~l~~~~~g~~~~~~v~p~kG~~lv~~~~~~~~~~~~~~~~dgr~~~i~P~~~~~ 270 (502)
T PRK13369 210 AAGPWVTDVIHRVAGSNSSRNVRLVKGSHIVVPKFWDGAQAYLFQNPDKRVIFANPYEGDF 270 (502)
T ss_pred CCCccHHHHHhhccCCCCCcceEEeeEEEEEeCCccCCCceEEEeCCCCeEEEEEEecCCE
Confidence 9999985 44433 432211122223333333322222222222234444 6788886554
No 73
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.36 E-value=2.9e-11 Score=127.30 Aligned_cols=62 Identities=19% Similarity=0.193 Sum_probs=48.8
Q ss_pred EechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCC---Cc--EEEeeEEE
Q 010200 167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD---GT--SLYAKLVV 241 (515)
Q Consensus 167 ~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---g~--~~~ad~vV 241 (515)
.++...+...|.+.+.+.| ++++.+++|+++.. +++.+.+.+.+ |+ ++.++.||
T Consensus 151 ~vd~~rl~~~l~~~A~~~G-a~i~~~~~V~~i~~--------------------~~~~~~v~~~~~~~g~~~~i~a~~VV 209 (508)
T PRK12266 151 WVDDARLVVLNARDAAERG-AEILTRTRVVSARR--------------------ENGLWHVTLEDTATGKRYTVRARALV 209 (508)
T ss_pred ccCHHHHHHHHHHHHHHcC-CEEEcCcEEEEEEE--------------------eCCEEEEEEEEcCCCCEEEEEcCEEE
Confidence 3567788888888898888 99999999999976 23445555543 43 79999999
Q ss_pred EecCCCch
Q 010200 242 GADGGKSR 249 (515)
Q Consensus 242 ~AdG~~S~ 249 (515)
.|+|.|+.
T Consensus 210 nAaG~wa~ 217 (508)
T PRK12266 210 NAAGPWVK 217 (508)
T ss_pred ECCCccHH
Confidence 99999984
No 74
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.36 E-value=1.7e-10 Score=117.39 Aligned_cols=61 Identities=15% Similarity=0.238 Sum_probs=50.8
Q ss_pred EechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCC
Q 010200 167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG 246 (515)
Q Consensus 167 ~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~ 246 (515)
.++...+...+.+.+.+.| ++++++++|++++. .++.+.+.+++| ++.+|.||.|+|.
T Consensus 145 ~v~p~~~~~~~~~~~~~~g-v~i~~~~~v~~i~~--------------------~~~~~~v~~~~g-~~~a~~vV~A~G~ 202 (376)
T PRK11259 145 FLRPELAIKAHLRLAREAG-AELLFNEPVTAIEA--------------------DGDGVTVTTADG-TYEAKKLVVSAGA 202 (376)
T ss_pred EEcHHHHHHHHHHHHHHCC-CEEECCCEEEEEEe--------------------eCCeEEEEeCCC-EEEeeEEEEecCc
Confidence 4667888888888888887 99999999999976 334577887777 6999999999999
Q ss_pred Cch
Q 010200 247 KSR 249 (515)
Q Consensus 247 ~S~ 249 (515)
++.
T Consensus 203 ~~~ 205 (376)
T PRK11259 203 WVK 205 (376)
T ss_pred chh
Confidence 865
No 75
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.36 E-value=4.5e-11 Score=122.35 Aligned_cols=70 Identities=13% Similarity=0.238 Sum_probs=56.9
Q ss_pred EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecC
Q 010200 166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADG 245 (515)
Q Consensus 166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG 245 (515)
..++...+.+.|.+.+++.| ++++++++|.+++. .++.+.|.+.+| ++.+|.||.|+|
T Consensus 144 g~vd~~~l~~aL~~~~~~~G-v~i~~~~~V~~i~~--------------------~~~~~~V~~~~g-~i~ad~vV~A~G 201 (393)
T PRK11728 144 GIVDYRAVAEAMAELIQARG-GEIRLGAEVTALDE--------------------HANGVVVRTTQG-EYEARTLINCAG 201 (393)
T ss_pred eEECHHHHHHHHHHHHHhCC-CEEEcCCEEEEEEe--------------------cCCeEEEEECCC-EEEeCEEEECCC
Confidence 45778999999999999988 99999999999975 334467777666 699999999999
Q ss_pred CCch-hhhhcCCc
Q 010200 246 GKSR-VRELAGFK 257 (515)
Q Consensus 246 ~~S~-vr~~l~~~ 257 (515)
.+|. +.+.++..
T Consensus 202 ~~s~~l~~~~g~~ 214 (393)
T PRK11728 202 LMSDRLAKMAGLE 214 (393)
T ss_pred cchHHHHHHhCCC
Confidence 9984 56666654
No 76
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.35 E-value=1.6e-10 Score=119.05 Aligned_cols=67 Identities=19% Similarity=0.172 Sum_probs=50.2
Q ss_pred echHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCC-----cEEEeeEEEE
Q 010200 168 VENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG-----TSLYAKLVVG 242 (515)
Q Consensus 168 i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-----~~~~ad~vV~ 242 (515)
++...+...|.+.+.+.| ++++++++|++++. .+..+++.+.++ .++.+|.||.
T Consensus 194 ~~~~~~~~~l~~~a~~~G-~~i~~~~~V~~i~~--------------------~~~~~~v~~~~~~~~~~~~i~a~~vV~ 252 (410)
T PRK12409 194 GDIHKFTTGLAAACARLG-VQFRYGQEVTSIKT--------------------DGGGVVLTVQPSAEHPSRTLEFDGVVV 252 (410)
T ss_pred cCHHHHHHHHHHHHHhCC-CEEEcCCEEEEEEE--------------------eCCEEEEEEEcCCCCccceEecCEEEE
Confidence 455688889999999998 99999999999975 234455544332 3699999999
Q ss_pred ecCCCch-hhhhcC
Q 010200 243 ADGGKSR-VRELAG 255 (515)
Q Consensus 243 AdG~~S~-vr~~l~ 255 (515)
|+|.++. +.+.++
T Consensus 253 a~G~~s~~l~~~~~ 266 (410)
T PRK12409 253 CAGVGSRALAAMLG 266 (410)
T ss_pred CCCcChHHHHHHhC
Confidence 9999985 333344
No 77
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.34 E-value=5.7e-12 Score=127.01 Aligned_cols=64 Identities=27% Similarity=0.274 Sum_probs=54.0
Q ss_pred eEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeE-EEcCCCcEEEeeEEEEe
Q 010200 165 GCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAK-LDLSDGTSLYAKLVVGA 243 (515)
Q Consensus 165 ~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~g~~~~ad~vV~A 243 (515)
+..++...+.+.|.+.+++.| ++|+.+++|+++.. ++..++ |.+++|+ +.+|.||.|
T Consensus 141 ~g~i~~~~l~~~l~~~~~~~G-v~i~~~~~V~~i~~--------------------~~~~v~gv~~~~g~-i~ad~vV~a 198 (358)
T PF01266_consen 141 GGVIDPRRLIQALAAEAQRAG-VEIRTGTEVTSIDV--------------------DGGRVTGVRTSDGE-IRADRVVLA 198 (358)
T ss_dssp EEEEEHHHHHHHHHHHHHHTT--EEEESEEEEEEEE--------------------ETTEEEEEEETTEE-EEECEEEE-
T ss_pred cccccccchhhhhHHHHHHhh-hhccccccccchhh--------------------cccccccccccccc-cccceeEec
Confidence 456889999999999999998 99999999999987 556677 9999997 999999999
Q ss_pred cCCCchh
Q 010200 244 DGGKSRV 250 (515)
Q Consensus 244 dG~~S~v 250 (515)
+|.++..
T Consensus 199 ~G~~s~~ 205 (358)
T PF01266_consen 199 AGAWSPQ 205 (358)
T ss_dssp -GGGHHH
T ss_pred cccccee
Confidence 9998864
No 78
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.31 E-value=1.5e-10 Score=126.23 Aligned_cols=61 Identities=20% Similarity=0.193 Sum_probs=52.4
Q ss_pred EechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCC
Q 010200 167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG 246 (515)
Q Consensus 167 ~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~ 246 (515)
.++...+...|.+.+.+ | ++++++++|++++. .++.++|.+++|..+.+|.||.|+|.
T Consensus 404 ~v~p~~l~~aL~~~a~~-G-v~i~~~~~V~~i~~--------------------~~~~~~v~t~~g~~~~ad~VV~A~G~ 461 (662)
T PRK01747 404 WLCPAELCRALLALAGQ-Q-LTIHFGHEVARLER--------------------EDDGWQLDFAGGTLASAPVVVLANGH 461 (662)
T ss_pred eeCHHHHHHHHHHhccc-C-cEEEeCCEeeEEEE--------------------eCCEEEEEECCCcEEECCEEEECCCC
Confidence 46788999999999988 7 99999999999976 33557788888877889999999999
Q ss_pred Cch
Q 010200 247 KSR 249 (515)
Q Consensus 247 ~S~ 249 (515)
++.
T Consensus 462 ~s~ 464 (662)
T PRK01747 462 DAA 464 (662)
T ss_pred Ccc
Confidence 985
No 79
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.28 E-value=2.7e-10 Score=117.61 Aligned_cols=61 Identities=15% Similarity=0.163 Sum_probs=48.4
Q ss_pred EechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCee-EEEcCCCcEEEeeEEEEecC
Q 010200 167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLA-KLDLSDGTSLYAKLVVGADG 245 (515)
Q Consensus 167 ~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~g~~~~ad~vV~AdG 245 (515)
.++...+...|.+.+.+.| ++|+++++|++++. .++.+ .+..+++ ++.+|.||.|+|
T Consensus 197 ~~~p~~~~~~l~~~~~~~G-~~i~~~~~V~~i~~--------------------~~~~~~~v~t~~~-~~~a~~VV~a~G 254 (416)
T PRK00711 197 TGDCQLFTQRLAAMAEQLG-VKFRFNTPVDGLLV--------------------EGGRITGVQTGGG-VITADAYVVALG 254 (416)
T ss_pred cCCHHHHHHHHHHHHHHCC-CEEEcCCEEEEEEe--------------------cCCEEEEEEeCCc-EEeCCEEEECCC
Confidence 3456788899999999888 99999999999975 22333 4555544 699999999999
Q ss_pred CCch
Q 010200 246 GKSR 249 (515)
Q Consensus 246 ~~S~ 249 (515)
.++.
T Consensus 255 ~~~~ 258 (416)
T PRK00711 255 SYST 258 (416)
T ss_pred cchH
Confidence 9985
No 80
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.23 E-value=1e-10 Score=117.42 Aligned_cols=181 Identities=20% Similarity=0.268 Sum_probs=105.2
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHH-------------H
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATIS-------------F 120 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~ 120 (515)
+.+||+|||||+.|+++|+.|+++. ++++|+|+||...+...... .+....-.|+...|.+.. +
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~--p~~~V~llEk~~~~a~~sS~-~NSgviHag~~y~p~slka~l~~~g~~~~~~~ 78 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYE--PDLSVALLEKEDGVAQESSS-NNSGVIHAGLYYTPGSLKAKLCVAGNINEFAI 78 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhC--CCceEEEEEccCcccccccc-CcccceeccccCCCcchhhHHHHHHHHHHHHH
Confidence 5699999999999999999999972 23999999999988644321 111111111212222111 1
Q ss_pred HHHcCC-------------------chhhhhhhc-cccceEEEEeCCCccceeeeccc-C---CCCcceEEechHHHHHH
Q 010200 121 FKEIGA-------------------WQYVQQHRH-AYFDKMQVWDYTGLGYTKYNARD-V---NKEILGCVVENKVLHSS 176 (515)
Q Consensus 121 l~~lgl-------------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~i~r~~l~~~ 176 (515)
-++++. .+.+.+... ..+..+...+........-.... . ...+.+..++...+...
T Consensus 79 ~kq~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~ 158 (429)
T COG0579 79 CKQLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRA 158 (429)
T ss_pred HHHhCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHH
Confidence 111210 000000000 00111111111111000000000 0 00122356888899999
Q ss_pred HHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCC-eeEEEcCCCcE-EEeeEEEEecCCCch-hhhh
Q 010200 177 LLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH-LAKLDLSDGTS-LYAKLVVGADGGKSR-VREL 253 (515)
Q Consensus 177 L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~g~~-~~ad~vV~AdG~~S~-vr~~ 253 (515)
|.+.+.+.| ++++++++|++++. ..+ ...+.+.+|++ ++|++||.|.|..|- +-+.
T Consensus 159 l~e~a~~~g-~~i~ln~eV~~i~~--------------------~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~ 217 (429)
T COG0579 159 LAEEAQANG-VELRLNTEVTGIEK--------------------QSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQM 217 (429)
T ss_pred HHHHHHHcC-CEEEecCeeeEEEE--------------------eCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHH
Confidence 999999997 99999999999987 333 56677778876 999999999999875 5555
Q ss_pred cCCcc
Q 010200 254 AGFKT 258 (515)
Q Consensus 254 l~~~~ 258 (515)
+|...
T Consensus 218 ~g~~~ 222 (429)
T COG0579 218 AGIPE 222 (429)
T ss_pred hCCCc
Confidence 56554
No 81
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.21 E-value=6.9e-10 Score=119.32 Aligned_cols=71 Identities=23% Similarity=0.295 Sum_probs=51.9
Q ss_pred EechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEc---CCCc--EEEeeEEE
Q 010200 167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDGT--SLYAKLVV 241 (515)
Q Consensus 167 ~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~g~--~~~ad~vV 241 (515)
.++...+...|.+.+.+.| ++++.+++|+++... ++ ++..+.|.. .+++ ++.+|.||
T Consensus 228 ~vdp~rl~~al~~~A~~~G-a~i~~~~~V~~l~~~-----------~~------~g~v~gV~v~d~~tg~~~~i~a~~VV 289 (627)
T PLN02464 228 QMNDSRLNVALACTAALAG-AAVLNYAEVVSLIKD-----------ES------TGRIVGARVRDNLTGKEFDVYAKVVV 289 (627)
T ss_pred EEcHHHHHHHHHHHHHhCC-cEEEeccEEEEEEEe-----------cC------CCcEEEEEEEECCCCcEEEEEeCEEE
Confidence 4688899999999999998 999999999999760 00 112222332 2333 68999999
Q ss_pred EecCCCch-hhhhcC
Q 010200 242 GADGGKSR-VRELAG 255 (515)
Q Consensus 242 ~AdG~~S~-vr~~l~ 255 (515)
.|+|+||. +++.++
T Consensus 290 nAaGaws~~l~~~~g 304 (627)
T PLN02464 290 NAAGPFCDEVRKMAD 304 (627)
T ss_pred ECCCHhHHHHHHhcc
Confidence 99999986 666554
No 82
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.21 E-value=1.3e-10 Score=121.58 Aligned_cols=156 Identities=18% Similarity=0.229 Sum_probs=93.9
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC-CCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcC-Cchhh
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP-ALGKSNFIKKEDPPDPRVSTVTPATISFFKEIG-AWQYV 130 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lg-l~~~~ 130 (515)
+..|||||||||+||+.+|+.+++. |.+|+|+|+.. .++.-+|+ +...+..- ....+-++.+| +...+
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~----G~kV~LiE~~~d~iG~m~Cn-----psiGG~ak-g~lvrEidalGg~~g~~ 71 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARM----GAKTLLLTHNLDTIGQMSCN-----PAIGGIAK-GHLVREIDALGGEMGKA 71 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHc----CCcEEEEecccccccccCCc-----cccccchh-hHHHHHHHhcCCHHHHH
Confidence 3469999999999999999999996 99999999985 34333331 11111111 11122233343 11111
Q ss_pred hhhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccC
Q 010200 131 QQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD 210 (515)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~ 210 (515)
..... ..+.+.+......+ ......+++..+...+.+.+.+.++++++ ...|+++..
T Consensus 72 ~d~~g---iq~r~ln~skGpAV---------~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~---------- 128 (618)
T PRK05192 72 IDKTG---IQFRMLNTSKGPAV---------RALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIV---------- 128 (618)
T ss_pred Hhhcc---CceeecccCCCCce---------eCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEe----------
Confidence 11111 01111111000000 00012578889999999999888668886 557888865
Q ss_pred CCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200 211 STPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 250 (515)
Q Consensus 211 ~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v 250 (515)
+++....|.+.+|..+.|+.||+|+|.++.=
T Consensus 129 ---------e~grV~GV~t~dG~~I~Ak~VIlATGTFL~g 159 (618)
T PRK05192 129 ---------ENGRVVGVVTQDGLEFRAKAVVLTTGTFLRG 159 (618)
T ss_pred ---------cCCEEEEEEECCCCEEECCEEEEeeCcchhc
Confidence 1223344777888899999999999987653
No 83
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.20 E-value=6.6e-10 Score=101.88 Aligned_cols=152 Identities=20% Similarity=0.230 Sum_probs=81.3
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCC--CCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIK--KEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (515)
+|+|||+||+||++|+.|+.+ |++|+||||....+.+-... .++...-..-.+.++.-.+++.+. .+.+.+
T Consensus 3 siaIVGaGiAGl~aA~~L~~a----G~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve---~~~~~g 75 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREA----GREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVE---ALRDDG 75 (331)
T ss_pred cEEEEccchHHHHHHHHHHhc----CcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHH---HHHhCC
Confidence 699999999999999999997 99999999998765432210 011111112223333333333221 111111
Q ss_pred ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (515)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~ 214 (515)
....-.-.+|...+.. .+..... .++-..-.-..|.++|.. . .+|.++++|+++-.
T Consensus 76 lV~~W~~~~~~~~~~~---~~~~~d~-~pyvg~pgmsalak~LAt-----d-L~V~~~~rVt~v~~-------------- 131 (331)
T COG3380 76 LVDVWTPAVWTFTGDG---SPPRGDE-DPYVGEPGMSALAKFLAT-----D-LTVVLETRVTEVAR-------------- 131 (331)
T ss_pred ceeeccccccccccCC---CCCCCCC-CccccCcchHHHHHHHhc-----c-chhhhhhhhhhhee--------------
Confidence 1010000111111111 0000111 111111112333333332 3 67899999999977
Q ss_pred cccccccCCeeEEEcCCCc-EEEeeEEEEecC
Q 010200 215 ATTLFTKGHLAKLDLSDGT-SLYAKLVVGADG 245 (515)
Q Consensus 215 ~~~~~~~~~~~~v~~~~g~-~~~ad~vV~AdG 245 (515)
.++.++++.++|. ...+|.||.|-=
T Consensus 132 ------~~~~W~l~~~~g~~~~~~d~vvla~P 157 (331)
T COG3380 132 ------TDNDWTLHTDDGTRHTQFDDVVLAIP 157 (331)
T ss_pred ------cCCeeEEEecCCCcccccceEEEecC
Confidence 4578999997765 788999988753
No 84
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.20 E-value=3.4e-11 Score=111.41 Aligned_cols=137 Identities=16% Similarity=0.143 Sum_probs=77.9
Q ss_pred EEECCCHHHHHHHHHHhcCCCCCCcE-EEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc-c
Q 010200 59 AVVGGGMVGMALACSLASMPLTKHLS-VAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH-A 136 (515)
Q Consensus 59 vIVGgG~aGl~~A~~L~~~~~~~G~~-V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~-~ 136 (515)
+||||||+||++|+.|++. |++ |+||||.+.++........ .. .+..... .
T Consensus 1 ~IIGaG~aGl~~a~~l~~~----g~~~v~v~e~~~~~Gg~w~~~~~-------------------~~----~~~~~~~~~ 53 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLER----GIDPVVVLERNDRPGGVWRRYYS-------------------YT----RLHSPSFFS 53 (203)
T ss_dssp EEE--SHHHHHHHHHHHHT----T---EEEEESSSSSTTHHHCH-T-------------------TT----T-BSSSCCT
T ss_pred CEECcCHHHHHHHHHHHhC----CCCcEEEEeCCCCCCCeeEEeCC-------------------CC----ccccCcccc
Confidence 7999999999999999996 888 9999999877422110000 00 0000000 0
Q ss_pred ccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcc
Q 010200 137 YFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSAT 216 (515)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~ 216 (515)
....+. +. ....+.... ..........+.++.++|.+.+++.+ ++++++++|++++.
T Consensus 54 ~~~~~~--~~---~~~~~~~~~-~~~~~~~~~~~~~v~~yl~~~~~~~~-l~i~~~~~V~~v~~---------------- 110 (203)
T PF13738_consen 54 SDFGLP--DF---ESFSFDDSP-EWRWPHDFPSGEEVLDYLQEYAERFG-LEIRFNTRVESVRR---------------- 110 (203)
T ss_dssp GGSS----CC---CHSCHHHHH-HHHHSBSSEBHHHHHHHHHHHHHHTT-GGEETS--EEEEEE----------------
T ss_pred ccccCC--cc---cccccccCC-CCCCCcccCCHHHHHHHHHHHHhhcC-cccccCCEEEEEEE----------------
Confidence 000000 00 000000000 00001123678889999999999987 88999999999987
Q ss_pred cccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200 217 TLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR 249 (515)
Q Consensus 217 ~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~ 249 (515)
.++.++|++.++.++.||.||.|+|..|.
T Consensus 111 ----~~~~w~v~~~~~~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 111 ----DGDGWTVTTRDGRTIRADRVVLATGHYSH 139 (203)
T ss_dssp ----ETTTEEEEETTS-EEEEEEEEE---SSCS
T ss_pred ----eccEEEEEEEecceeeeeeEEEeeeccCC
Confidence 34559999999988999999999998665
No 85
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.17 E-value=8.8e-10 Score=115.01 Aligned_cols=73 Identities=15% Similarity=0.148 Sum_probs=55.1
Q ss_pred EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEc---CCCc--EEEeeEE
Q 010200 166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDGT--SLYAKLV 240 (515)
Q Consensus 166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~g~--~~~ad~v 240 (515)
..++...+.+.|.+.+++.|+++|+++++|++++.. .++.+.+.. .+|+ ++.|++|
T Consensus 178 g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~-------------------~dg~~~v~~~~~~~G~~~~i~A~~V 238 (494)
T PRK05257 178 TDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRN-------------------DDGSWTVTVKDLKTGEKRTVRAKFV 238 (494)
T ss_pred eEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEEC-------------------CCCCEEEEEEEcCCCceEEEEcCEE
Confidence 568888999999999998876899999999999760 112255543 3353 6999999
Q ss_pred EEecCCCch-hhhhcCCc
Q 010200 241 VGADGGKSR-VRELAGFK 257 (515)
Q Consensus 241 V~AdG~~S~-vr~~l~~~ 257 (515)
|.|+|.+|. +.+.+|..
T Consensus 239 VvaAGg~s~~L~~~~Gi~ 256 (494)
T PRK05257 239 FIGAGGGALPLLQKSGIP 256 (494)
T ss_pred EECCCcchHHHHHHcCCC
Confidence 999998874 66666655
No 86
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.16 E-value=1e-09 Score=114.18 Aligned_cols=71 Identities=17% Similarity=0.231 Sum_probs=56.3
Q ss_pred EEechHHHHHHHHHHHhc----CCC-ceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEE
Q 010200 166 CVVENKVLHSSLLSCMQN----TEF-QKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLV 240 (515)
Q Consensus 166 ~~i~r~~l~~~L~~~~~~----~g~-v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~v 240 (515)
..++...+...|.+.+++ .|. ++|+++++|++++. +.+..+.|.+.+| ++.||.|
T Consensus 206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~-------------------~~~~~~~V~T~~G-~i~A~~V 265 (497)
T PTZ00383 206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIER-------------------SNDSLYKIHTNRG-EIRARFV 265 (497)
T ss_pred EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEe-------------------cCCCeEEEEECCC-EEEeCEE
Confidence 357888999999999988 653 78999999999976 1235577877777 5999999
Q ss_pred EEecCCCch-hhhhcCC
Q 010200 241 VGADGGKSR-VRELAGF 256 (515)
Q Consensus 241 V~AdG~~S~-vr~~l~~ 256 (515)
|.|.|.||. +-+.+|.
T Consensus 266 VvaAG~~S~~La~~~Gi 282 (497)
T PTZ00383 266 VVSACGYSLLFAQKMGY 282 (497)
T ss_pred EECcChhHHHHHHHhCC
Confidence 999999985 5555654
No 87
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.16 E-value=3.9e-10 Score=116.76 Aligned_cols=158 Identities=11% Similarity=0.134 Sum_probs=89.1
Q ss_pred CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhh
Q 010200 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ 131 (515)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~ 131 (515)
+....+|+||||||+||++|..|++. |++|+||||.+.++............ ..++.+... ... -.+++.+.
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~----G~~v~vfE~~~~vGG~W~~~~~~~~d--~~~~~~~~~-~~~-s~~Y~~L~ 78 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRRE----GHTVVVFEREKQVGGLWVYTPKSESD--PLSLDPTRS-IVH-SSVYESLR 78 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhc----CCeEEEEecCCCCcceeecCCCcCCC--ccccCCCCc-ccc-hhhhhhhh
Confidence 33467999999999999999999996 99999999999875322111110000 001111000 000 00000110
Q ss_pred hhhccccceEEEEeCCCccceeeeccc----CCCCcceEEechHHHHHHHHHHHhcCCCce--EEcCCeeEEEEeCCCCC
Q 010200 132 QHRHAYFDKMQVWDYTGLGYTKYNARD----VNKEILGCVVENKVLHSSLLSCMQNTEFQK--TIYPSRLTSMALLPSSS 205 (515)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~--i~~~~~v~~i~~~~~~~ 205 (515)
... +...+.+.+ ++... ..... .....+.++.++|.+.++..+ +. |+++++|++++.
T Consensus 79 tn~--p~~~m~f~d--------fp~~~~~~~~~~~~-~~fp~~~ev~~YL~~~a~~fg-l~~~I~~~t~V~~V~~----- 141 (461)
T PLN02172 79 TNL--PRECMGYRD--------FPFVPRFDDESRDS-RRYPSHREVLAYLQDFAREFK-IEEMVRFETEVVRVEP----- 141 (461)
T ss_pred ccC--CHhhccCCC--------CCCCcccccccCcC-CCCCCHHHHHHHHHHHHHHcC-CcceEEecCEEEEEee-----
Confidence 000 000011100 11000 00000 112456789999999998887 66 899999999976
Q ss_pred CcccCCCCCcccccccCCeeEEEcCCC--c--EEEeeEEEEecCCCch
Q 010200 206 SISVDSTPSATTLFTKGHLAKLDLSDG--T--SLYAKLVVGADGGKSR 249 (515)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~v~~~~g--~--~~~ad~vV~AdG~~S~ 249 (515)
.+..++|+..++ . +..+|.||.|+|..+.
T Consensus 142 ---------------~~~~w~V~~~~~~~~~~~~~~d~VIvAtG~~~~ 174 (461)
T PLN02172 142 ---------------VDGKWRVQSKNSGGFSKDEIFDAVVVCNGHYTE 174 (461)
T ss_pred ---------------cCCeEEEEEEcCCCceEEEEcCEEEEeccCCCC
Confidence 335677776542 2 4679999999998654
No 88
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.16 E-value=6.7e-10 Score=115.79 Aligned_cols=72 Identities=14% Similarity=0.211 Sum_probs=54.8
Q ss_pred EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEc---CCC--cEEEeeEE
Q 010200 166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDG--TSLYAKLV 240 (515)
Q Consensus 166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~g--~~~~ad~v 240 (515)
..++...+...|.+.+.+.| ++|+++++|++++.. .+..+.+.+ .+| .++.+|+|
T Consensus 173 g~Vdp~~l~~aL~~~a~~~G-v~i~~~t~V~~i~~~-------------------~~~~v~v~~~~~~~g~~~~i~A~~V 232 (483)
T TIGR01320 173 TDVDFGALTKQLLGYLVQNG-TTIRFGHEVRNLKRQ-------------------SDGSWTVTVKNTRTGGKRTLNTRFV 232 (483)
T ss_pred EEECHHHHHHHHHHHHHhCC-CEEEeCCEEEEEEEc-------------------CCCeEEEEEeeccCCceEEEECCEE
Confidence 46888999999999999988 999999999999760 112344442 234 26899999
Q ss_pred EEecCCCch-hhhhcCCc
Q 010200 241 VGADGGKSR-VRELAGFK 257 (515)
Q Consensus 241 V~AdG~~S~-vr~~l~~~ 257 (515)
|.|.|.+|. +++.+|..
T Consensus 233 V~AAG~~s~~La~~~Gi~ 250 (483)
T TIGR01320 233 FVGAGGGALPLLQKSGIP 250 (483)
T ss_pred EECCCcchHHHHHHcCCC
Confidence 999998874 66667655
No 89
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.15 E-value=2e-09 Score=110.30 Aligned_cols=169 Identities=17% Similarity=0.248 Sum_probs=105.0
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCC---chh
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGA---WQY 129 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl---~~~ 129 (515)
+..+||+|||||+.|+-+|+.++.. |++|+++|++.... ...++...+-..++++|+...+ .+.
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~R----Gl~v~LvE~~D~As---------GTSsrstkLiHGGlRYl~~~e~~lvrEa 76 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGR----GLKVALVEKGDLAS---------GTSSRSTKLIHGGLRYLEQYEFSLVREA 76 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHhC----CCeEEEEecCcccC---------cccCccccCccchhhhhhhcchHHHHHH
Confidence 3789999999999999999999995 99999999999762 2234445555566666665432 122
Q ss_pred hhhh---------hccccceE-EEEe----------------CCCc------cceeeecc-------cC-------CCCc
Q 010200 130 VQQH---------RHAYFDKM-QVWD----------------YTGL------GYTKYNAR-------DV-------NKEI 163 (515)
Q Consensus 130 ~~~~---------~~~~~~~~-~~~~----------------~~~~------~~~~~~~~-------~~-------~~~~ 163 (515)
+.+. ...+...+ .+++ .... ....+... .. ...+
T Consensus 77 l~Er~vL~~~APH~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y 156 (532)
T COG0578 77 LAEREVLLRIAPHLVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRY 156 (532)
T ss_pred HHHHHHHHHhCccccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEE
Confidence 2111 11011000 0000 0000 00000000 00 0012
Q ss_pred ceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCC---Cc--EEEee
Q 010200 164 LGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD---GT--SLYAK 238 (515)
Q Consensus 164 ~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---g~--~~~ad 238 (515)
..+.++-.+|.-.....+.+.| .+++..++|+++.. +++.+.|+..| |+ +++++
T Consensus 157 ~D~~vddaRLv~~~a~~A~~~G-a~il~~~~v~~~~r--------------------e~~v~gV~~~D~~tg~~~~ira~ 215 (532)
T COG0578 157 PDGVVDDARLVAANARDAAEHG-AEILTYTRVESLRR--------------------EGGVWGVEVEDRETGETYEIRAR 215 (532)
T ss_pred ccceechHHHHHHHHHHHHhcc-cchhhcceeeeeee--------------------cCCEEEEEEEecCCCcEEEEEcC
Confidence 2246777888888999999998 89999999999987 33344555544 32 69999
Q ss_pred EEEEecCCCch-hhhhcC
Q 010200 239 LVVGADGGKSR-VRELAG 255 (515)
Q Consensus 239 ~vV~AdG~~S~-vr~~l~ 255 (515)
.||.|+|.|+- +++..+
T Consensus 216 ~VVNAaGpW~d~i~~~~~ 233 (532)
T COG0578 216 AVVNAAGPWVDEILEMAG 233 (532)
T ss_pred EEEECCCccHHHHHHhhc
Confidence 99999999986 455553
No 90
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.14 E-value=3.4e-10 Score=106.81 Aligned_cols=175 Identities=11% Similarity=0.058 Sum_probs=104.4
Q ss_pred CCCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhh
Q 010200 51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYV 130 (515)
Q Consensus 51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~ 130 (515)
.+.+..||+|||||+-|+++|++|++. |.++.++|+.+.+...|......+.....+.-.....-.++.+..|..+
T Consensus 3 ~~~~~~~viiVGAGVfG~stAyeLaK~----g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~ 78 (399)
T KOG2820|consen 3 EMVKSRDVIIVGAGVFGLSTAYELAKR----GDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNL 78 (399)
T ss_pred ccccceeEEEEcccccchHHHHHHHhc----CCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhC
Confidence 345678999999999999999999996 8999999999988665542211111111110000000011111122221
Q ss_pred hhhhcc--ccceEEEEeCCCc-------------------------cceeee------cccC-CCCcceEEechHHHHHH
Q 010200 131 QQHRHA--YFDKMQVWDYTGL-------------------------GYTKYN------ARDV-NKEILGCVVENKVLHSS 176 (515)
Q Consensus 131 ~~~~~~--~~~~~~~~~~~~~-------------------------~~~~~~------~~~~-~~~~~~~~i~r~~l~~~ 176 (515)
...... ......++.++.. ..-.|+ .... -....+-.+....-.++
T Consensus 79 ~~~~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~ 158 (399)
T KOG2820|consen 79 PEESGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKA 158 (399)
T ss_pred hhhhceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHH
Confidence 111000 0111111111110 000111 0000 01233446778888899
Q ss_pred HHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCC
Q 010200 177 LLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGK 247 (515)
Q Consensus 177 L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~ 247 (515)
|.+.+.+.| +.++.|.+|+.+... ++.+..+.|.+.+|..+.++-+|.+.|+|
T Consensus 159 ~~~~~~~~G-~i~~dg~~v~~~~~~-----------------~e~~~~v~V~Tt~gs~Y~akkiI~t~GaW 211 (399)
T KOG2820|consen 159 LQDKARELG-VIFRDGEKVKFIKFV-----------------DEEGNHVSVQTTDGSIYHAKKIIFTVGAW 211 (399)
T ss_pred HHHHHHHcC-eEEecCcceeeEeec-----------------cCCCceeEEEeccCCeeecceEEEEecHH
Confidence 999999999 899999999999761 12557789999999999999999999997
No 91
>PLN02661 Putative thiazole synthesis
Probab=99.14 E-value=1e-09 Score=107.23 Aligned_cols=144 Identities=18% Similarity=0.239 Sum_probs=87.2
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (515)
.++||+|||||++|+++|+.|++. +|++|+|+||...++...|. .+ .......+.....++|+++|+.
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~---~g~kV~viEk~~~~GGG~~~--gg-~l~~~~vv~~~a~e~LeElGV~------ 158 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKN---PNVKVAIIEQSVSPGGGAWL--GG-QLFSAMVVRKPAHLFLDELGVP------ 158 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHc---CCCeEEEEecCcccccceee--Cc-ccccccccccHHHHHHHHcCCC------
Confidence 358999999999999999999975 48999999998877533321 00 0000112222234556666541
Q ss_pred hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200 134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP 213 (515)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~ 213 (515)
++. .+ . +....+-..+...|.+++.+..+++++.++.++++..+
T Consensus 159 ----fd~------~d-g-------------y~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~------------ 202 (357)
T PLN02661 159 ----YDE------QE-N-------------YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK------------ 202 (357)
T ss_pred ----ccc------CC-C-------------eeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEec------------
Confidence 110 00 0 00111334566788887766555999999999999761
Q ss_pred CcccccccCCeeEEEc-----C--CC-----cEEEeeEEEEecCCCchh
Q 010200 214 SATTLFTKGHLAKLDL-----S--DG-----TSLYAKLVVGADGGKSRV 250 (515)
Q Consensus 214 ~~~~~~~~~~~~~v~~-----~--~g-----~~~~ad~vV~AdG~~S~v 250 (515)
++ ...++.+.+ + ++ ..+.|+.||.|+|..+++
T Consensus 203 ~g-----rVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ 246 (357)
T PLN02661 203 GD-----RVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPF 246 (357)
T ss_pred CC-----EEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcc
Confidence 00 112233211 1 11 268999999999977764
No 92
>PLN02612 phytoene desaturase
Probab=99.13 E-value=5.9e-08 Score=103.53 Aligned_cols=74 Identities=19% Similarity=0.229 Sum_probs=51.7
Q ss_pred CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCC--CCCCCCcEE----EeCHhHHHHHHHcC
Q 010200 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKK--EDPPDPRVS----TVTPATISFFKEIG 125 (515)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~--~~~~~~~~~----~l~~~~~~~l~~lg 125 (515)
...+.+|+|||||++||++|+.|++. |++|+|+|+...++....... .+.....|. ...++..++++++|
T Consensus 90 ~~~~~~v~iiG~G~~Gl~~a~~l~~~----g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG 165 (567)
T PLN02612 90 PAKPLKVVIAGAGLAGLSTAKYLADA----GHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELG 165 (567)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHhc----CCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhC
Confidence 34568999999999999999999996 999999999987654332111 111111121 23467788999998
Q ss_pred Cchh
Q 010200 126 AWQY 129 (515)
Q Consensus 126 l~~~ 129 (515)
+.+.
T Consensus 166 ~~~~ 169 (567)
T PLN02612 166 INDR 169 (567)
T ss_pred Cccc
Confidence 8554
No 93
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.13 E-value=4.6e-09 Score=107.34 Aligned_cols=64 Identities=19% Similarity=0.193 Sum_probs=52.4
Q ss_pred EechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCC
Q 010200 167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG 246 (515)
Q Consensus 167 ~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~ 246 (515)
.++...+...|.+.+.+.|...+..++.+..++. ....+.|.+.+|. +.+|.||.|+|.
T Consensus 152 ~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~--------------------~~~~~~v~t~~g~-i~a~~vv~a~G~ 210 (387)
T COG0665 152 HLDPRLLTRALAAAAEELGVVIIEGGTPVTSLER--------------------DGRVVGVETDGGT-IEADKVVLAAGA 210 (387)
T ss_pred cCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEe--------------------cCcEEEEEeCCcc-EEeCEEEEcCch
Confidence 4667889999999999998667777999999875 1145778888887 999999999999
Q ss_pred Cchhh
Q 010200 247 KSRVR 251 (515)
Q Consensus 247 ~S~vr 251 (515)
++..-
T Consensus 211 ~~~~l 215 (387)
T COG0665 211 WAGEL 215 (387)
T ss_pred HHHHH
Confidence 98753
No 94
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.10 E-value=5e-10 Score=118.95 Aligned_cols=70 Identities=17% Similarity=0.195 Sum_probs=51.8
Q ss_pred EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCee-EEEc---CCC--cEEEeeE
Q 010200 166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLA-KLDL---SDG--TSLYAKL 239 (515)
Q Consensus 166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~---~~g--~~~~ad~ 239 (515)
..++...+...+.+.+.+.| ++++.+++|+++.. .++.+ .|.+ .++ .++.||.
T Consensus 144 g~vdp~rl~~al~~~A~~~G-a~i~~~t~V~~i~~--------------------~~~~v~gv~v~d~~~g~~~~i~A~~ 202 (546)
T PRK11101 144 GTVDPFRLTAANMLDAKEHG-AQILTYHEVTGLIR--------------------EGDTVCGVRVRDHLTGETQEIHAPV 202 (546)
T ss_pred cEECHHHHHHHHHHHHHhCC-CEEEeccEEEEEEE--------------------cCCeEEEEEEEEcCCCcEEEEECCE
Confidence 35788899999999999998 99999999999976 22222 2333 223 3799999
Q ss_pred EEEecCCCch-hhhhcCC
Q 010200 240 VVGADGGKSR-VRELAGF 256 (515)
Q Consensus 240 vV~AdG~~S~-vr~~l~~ 256 (515)
||.|+|.|+. +.+..+.
T Consensus 203 VVnAaG~wa~~l~~~~g~ 220 (546)
T PRK11101 203 VVNAAGIWGQHIAEYADL 220 (546)
T ss_pred EEECCChhHHHHHHhcCC
Confidence 9999999985 4444443
No 95
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.10 E-value=1.4e-08 Score=106.34 Aligned_cols=74 Identities=18% Similarity=0.310 Sum_probs=48.1
Q ss_pred cEEEECCCHHHHHHHHHHhcCCC--CCCcEEEEEcCCCCCCCCCCCCCC-CCC-CCcE---EEeCHhHHHHHHHcCCchh
Q 010200 57 DVAVVGGGMVGMALACSLASMPL--TKHLSVAIIDSNPALGKSNFIKKE-DPP-DPRV---STVTPATISFFKEIGAWQY 129 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~--~~G~~V~v~E~~~~~~~~~~~~~~-~~~-~~~~---~~l~~~~~~~l~~lgl~~~ 129 (515)
+|+|||||++||++|+.|++.+- ..|++|+|+|+++.++.+...... +.. ...+ ..-.+...++++++|+.+.
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~~~~~~~~l~~~lgl~~~ 82 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDLNLEEE 82 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhcCCHHHHHHHHHcCCccc
Confidence 69999999999999999998510 014899999999988654321100 000 0001 1124566788899998654
Q ss_pred h
Q 010200 130 V 130 (515)
Q Consensus 130 ~ 130 (515)
+
T Consensus 83 ~ 83 (463)
T PRK12416 83 M 83 (463)
T ss_pred e
Confidence 4
No 96
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.09 E-value=1.3e-09 Score=113.03 Aligned_cols=73 Identities=14% Similarity=0.130 Sum_probs=54.7
Q ss_pred EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEE---cCCCc--EEEeeEE
Q 010200 166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLD---LSDGT--SLYAKLV 240 (515)
Q Consensus 166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~g~--~~~ad~v 240 (515)
..++...+.+.|.+.+.+.++++++++++|++++. +.++.|++. ..+++ ++.||+|
T Consensus 179 ~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~-------------------~~d~~w~v~v~~t~~g~~~~i~Ad~V 239 (497)
T PRK13339 179 TDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLER-------------------LSDGGWEVTVKDRNTGEKREQVADYV 239 (497)
T ss_pred eecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEE-------------------CCCCCEEEEEEecCCCceEEEEcCEE
Confidence 46888899999999986553499999999999976 113446665 33442 6899999
Q ss_pred EEecCCCch-hhhhcCCc
Q 010200 241 VGADGGKSR-VRELAGFK 257 (515)
Q Consensus 241 V~AdG~~S~-vr~~l~~~ 257 (515)
|.|.|++|. +.+.+|..
T Consensus 240 V~AAGawS~~La~~~Gi~ 257 (497)
T PRK13339 240 FIGAGGGAIPLLQKSGIP 257 (497)
T ss_pred EECCCcchHHHHHHcCCC
Confidence 999999984 56666654
No 97
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.07 E-value=3.5e-08 Score=103.43 Aligned_cols=75 Identities=16% Similarity=0.258 Sum_probs=48.4
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCC-C-CCCCcEE---EeCHhHHHHHHHcCCchhh
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKE-D-PPDPRVS---TVTPATISFFKEIGAWQYV 130 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~-~-~~~~~~~---~l~~~~~~~l~~lgl~~~~ 130 (515)
.||+|||||++||++|+.|++.+...|++|+|+|+++.++.+...... + .....+. .-.++..++++++|+.+.+
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~~~ 82 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDLGLEHVL 82 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHcCCCccc
Confidence 589999999999999999999410018999999999988543211000 0 0000011 1134577888999886543
No 98
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.07 E-value=3.5e-10 Score=115.64 Aligned_cols=156 Identities=21% Similarity=0.300 Sum_probs=86.2
Q ss_pred EEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHh-HHHHHHHcCCchhhhhhhccc
Q 010200 59 AVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPA-TISFFKEIGAWQYVQQHRHAY 137 (515)
Q Consensus 59 vIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~l~~lgl~~~~~~~~~~~ 137 (515)
+|||||++||++|+.|++. |++|+|+||.+.++.+....+ .+++...+.. ...+....+-...........
T Consensus 1 vIIGgG~aGl~aAi~aa~~----G~~V~llEk~~~~G~k~~~sG----~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~ 72 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAARE----GLSVLLLEKNKKIGKKLLISG----GGRCNLTNSCPTPEFVAYYPRNGKFLRSALSR 72 (400)
T ss_pred CEEEEeHHHHHHHHHHHhc----CCcEEEEecCccccccccccC----CceEEccCCCcchhHHHhcCCCcHHHHHHHHh
Confidence 6999999999999999996 999999999987754321111 1111111111 111112221100100000000
Q ss_pred c---ceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200 138 F---DKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (515)
Q Consensus 138 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~ 214 (515)
+ +-+.++...+.. +... . ....+...-....+.+.|.+.+++.| ++++++++|++++.
T Consensus 73 ~~~~d~~~~~~~~Gv~-~~~~--~-~g~~~p~~~~a~~v~~~L~~~l~~~g-v~i~~~~~V~~i~~-------------- 133 (400)
T TIGR00275 73 FSNKDLIDFFESLGLE-LKVE--E-DGRVFPCSDSAADVLDALLNELKELG-VEILTNSKVKSIKK-------------- 133 (400)
T ss_pred CCHHHHHHHHHHcCCe-eEEe--c-CCEeECCCCCHHHHHHHHHHHHHHCC-CEEEeCCEEEEEEe--------------
Confidence 0 000000000100 0000 0 00000011235778899999999887 99999999999965
Q ss_pred cccccccCCeeEEEcCCCcEEEeeEEEEecCCCc
Q 010200 215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKS 248 (515)
Q Consensus 215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S 248 (515)
.+..+.+.+ ++.++.+|.||.|+|.+|
T Consensus 134 ------~~~~~~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 134 ------DDNGFGVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred ------cCCeEEEEE-CCcEEEcCEEEECCCCcc
Confidence 234466666 455799999999999987
No 99
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.07 E-value=1.2e-09 Score=108.60 Aligned_cols=148 Identities=20% Similarity=0.256 Sum_probs=90.3
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEE-cCCCCCCCCCCCCCCCCCCCcEEEeCHh-HHHHHHHcC-Cchhhhhh
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAII-DSNPALGKSNFIKKEDPPDPRVSTVTPA-TISFFKEIG-AWQYVQQH 133 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~-E~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~l~~lg-l~~~~~~~ 133 (515)
||+|||||.||+.+|+.+++. |.+|++| ++......-+|+ + .-.++... ..+.++.+| +.-.+.+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~----G~~V~Lit~~~d~i~~~~Cn-----p--sigg~~kg~L~~Eidalgg~m~~~aD- 68 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARM----GAKVLLITHNTDTIGEMSCN-----P--SIGGIAKGHLVREIDALGGLMGRAAD- 68 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHT----T--EEEEES-GGGTT--SSS-----S--EEESTTHHHHHHHHHHTT-SHHHHHH-
T ss_pred CEEEECCCHHHHHHHHHHHHC----CCCEEEEeecccccccccch-----h--hhccccccchhHHHhhhhhHHHHHHh-
Confidence 899999999999999999997 9999999 555555444551 1 11111211 123344454 2111111
Q ss_pred hccccceEEEEeC-CCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCC
Q 010200 134 RHAYFDKMQVWDY-TGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST 212 (515)
Q Consensus 134 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~ 212 (515)
...+++... .... .......+.++|..+...+.+.+++.++++|+. .+|+++..
T Consensus 69 ----~~~i~~~~lN~skG--------pav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~-~~V~~l~~------------ 123 (392)
T PF01134_consen 69 ----ETGIHFRMLNRSKG--------PAVHALRAQVDRDKYSRAMREKLESHPNLTIIQ-GEVTDLIV------------ 123 (392)
T ss_dssp ----HHEEEEEEESTTS---------GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEE-S-EEEEEE------------
T ss_pred ----HhhhhhhcccccCC--------CCccchHhhccHHHHHHHHHHHHhcCCCeEEEE-cccceEEe------------
Confidence 122222211 1100 011222358999999999999999988899874 69999976
Q ss_pred CCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCc
Q 010200 213 PSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKS 248 (515)
Q Consensus 213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S 248 (515)
+++....|.+.+|+++.+|.||.|+|.+.
T Consensus 124 -------e~~~v~GV~~~~g~~~~a~~vVlaTGtfl 152 (392)
T PF01134_consen 124 -------ENGKVKGVVTKDGEEIEADAVVLATGTFL 152 (392)
T ss_dssp -------CTTEEEEEEETTSEEEEECEEEE-TTTGB
T ss_pred -------cCCeEEEEEeCCCCEEecCEEEEeccccc
Confidence 13455668889999999999999999944
No 100
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.07 E-value=6.5e-11 Score=122.07 Aligned_cols=154 Identities=20% Similarity=0.210 Sum_probs=36.2
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCH-hHHHHHHHcCCchhhhhhhc
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTP-ATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~l~~lgl~~~~~~~~~ 135 (515)
|||||||||+|+++|+.+++. |.+|+|+||.+.++.... .+....+.. .... ...-|+..++.+...
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~----G~~VlLiE~~~~lGG~~t-------~~~~~~~~~~~~~~-~~~~gi~~e~~~~~~ 68 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARA----GAKVLLIEKGGFLGGMAT-------SGGVSPFDGNHDED-QVIGGIFREFLNRLR 68 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHT----TS-EEEE-SSSSSTGGGG-------GSSS-EETTEEHHH-HHHHHHHHHHHHST-
T ss_pred CEEEECccHHHHHHHHHHHHC----CCEEEEEECCccCCCcce-------ECCcCChhhcchhh-ccCCCHHHHHHHHHh
Confidence 899999999999999999997 999999999998853321 111111211 1111 111123333333221
Q ss_pred cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~ 215 (515)
. .... ..+ ........+.+++..+...|.+.+.+.| ++|+++++|+++..+ ++
T Consensus 69 ~-~~~~-----------~~~--~~~~~~~~~~~~~~~~~~~l~~~l~e~g-v~v~~~t~v~~v~~~------------~~ 121 (428)
T PF12831_consen 69 A-RGGY-----------PQE--DRYGWVSNVPFDPEVFKAVLDEMLAEAG-VEVLLGTRVVDVIRD------------GG 121 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred h-hccc-----------ccc--cccccccccccccccccccccccccccc-ccccccccccccccc------------cc
Confidence 0 0000 000 0000000134666777777888887777 999999999999761 01
Q ss_pred ccccccCCeeEEEcCCC-cEEEeeEEEEecCCCchhhhhcC
Q 010200 216 TTLFTKGHLAKLDLSDG-TSLYAKLVVGADGGKSRVRELAG 255 (515)
Q Consensus 216 ~~~~~~~~~~~v~~~~g-~~~~ad~vV~AdG~~S~vr~~l~ 255 (515)
....+++...+| .++.||++|+|+|- +.+-...|
T Consensus 122 -----~i~~V~~~~~~g~~~i~A~~~IDaTG~-g~l~~~aG 156 (428)
T PF12831_consen 122 -----RITGVIVETKSGRKEIRAKVFIDATGD-GDLAALAG 156 (428)
T ss_dssp -----------------------------------------
T ss_pred -----ccccccccccccccccccccccccccc-cccccccc
Confidence 223344443334 48999999999994 55444443
No 101
>PRK07233 hypothetical protein; Provisional
Probab=99.07 E-value=5.2e-08 Score=101.17 Aligned_cols=69 Identities=26% Similarity=0.367 Sum_probs=47.7
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCC-CCCCCcE----EEeCHhHHHHHHHcCCchh
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKE-DPPDPRV----STVTPATISFFKEIGAWQY 129 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~-~~~~~~~----~~l~~~~~~~l~~lgl~~~ 129 (515)
+|+|||||++||++|+.|++. |++|+|+|+.+.++........ +.....+ ..-.+...++++++|+.+.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~----G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~~~~~~~~l~~~lg~~~~ 74 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR----GHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKSDEALLELLDELGLEDK 74 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC----CCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhccccHHHHHHHHHcCCCCc
Confidence 599999999999999999996 9999999999988654321110 1110011 1124567788888887443
No 102
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.06 E-value=1.6e-09 Score=114.19 Aligned_cols=40 Identities=30% Similarity=0.566 Sum_probs=36.1
Q ss_pred CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (515)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~ 95 (515)
.+.++||||||||++|+++|+.+++. |.+|+|+||.+..+
T Consensus 58 ~~~~~DVvVVG~G~AGl~AAi~Aa~~----Ga~VivlEK~~~~G 97 (506)
T PRK06481 58 LKDKYDIVIVGAGGAGMSAAIEAKDA----GMNPVILEKMPVAG 97 (506)
T ss_pred ccccCCEEEECcCHHHHHHHHHHHHC----CCCEEEEECCCCCC
Confidence 44579999999999999999999996 99999999998764
No 103
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.05 E-value=1.2e-09 Score=113.92 Aligned_cols=61 Identities=20% Similarity=0.109 Sum_probs=51.0
Q ss_pred EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecC
Q 010200 166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADG 245 (515)
Q Consensus 166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG 245 (515)
..++...+...|.+.+.+.| ++|+.+++|++++. +..+.|.+.+| ++.||.||.|+|
T Consensus 178 g~i~P~~l~~~L~~~a~~~G-v~i~~~t~V~~i~~---------------------~~~~~v~t~~g-~v~A~~VV~Atg 234 (460)
T TIGR03329 178 ASVQPGLLVRGLRRVALELG-VEIHENTPMTGLEE---------------------GQPAVVRTPDG-QVTADKVVLALN 234 (460)
T ss_pred eEECHHHHHHHHHHHHHHcC-CEEECCCeEEEEee---------------------CCceEEEeCCc-EEECCEEEEccc
Confidence 46788999999999999998 99999999999864 13356777766 599999999999
Q ss_pred CCch
Q 010200 246 GKSR 249 (515)
Q Consensus 246 ~~S~ 249 (515)
+++.
T Consensus 235 a~s~ 238 (460)
T TIGR03329 235 AWMA 238 (460)
T ss_pred cccc
Confidence 9975
No 104
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.04 E-value=9.4e-10 Score=111.52 Aligned_cols=58 Identities=17% Similarity=0.159 Sum_probs=47.0
Q ss_pred EEechHHHHHHHHHHHhcC-CCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEec
Q 010200 166 CVVENKVLHSSLLSCMQNT-EFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGAD 244 (515)
Q Consensus 166 ~~i~r~~l~~~L~~~~~~~-g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~Ad 244 (515)
..++...+...|.+.+.+. | ++++.+++|++++. . .|.+.+|. +.||.||.|+
T Consensus 140 g~v~p~~~~~~l~~~~~~~~G-v~i~~~t~V~~i~~----------------------~--~v~t~~g~-i~a~~VV~A~ 193 (365)
T TIGR03364 140 LRVEPREAIPALAAYLAEQHG-VEFHWNTAVTSVET----------------------G--TVRTSRGD-VHADQVFVCP 193 (365)
T ss_pred eeECHHHHHHHHHHHHHhcCC-CEEEeCCeEEEEec----------------------C--eEEeCCCc-EEeCEEEECC
Confidence 4577888999999988765 6 99999999999964 2 45666664 7899999999
Q ss_pred CCCch
Q 010200 245 GGKSR 249 (515)
Q Consensus 245 G~~S~ 249 (515)
|.++.
T Consensus 194 G~~s~ 198 (365)
T TIGR03364 194 GADFE 198 (365)
T ss_pred CCChh
Confidence 99874
No 105
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.02 E-value=2.6e-09 Score=105.02 Aligned_cols=113 Identities=24% Similarity=0.330 Sum_probs=79.6
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (515)
|||+|||||++|+++|..|++. |++|+|||+.. ++ |.....
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~----g~~v~lie~~~-~g--------------g~~~~~-------------------- 41 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARA----NLKTLIIEGME-PG--------------GQLTTT-------------------- 41 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHC----CCCEEEEeccC-CC--------------cceeec--------------------
Confidence 6999999999999999999996 99999999876 31 100000
Q ss_pred cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~ 215 (515)
..+. .++ ... ..+...++...+.+.+++.+ +++++ .+|++++.
T Consensus 42 ---~~~~----------~~~--~~~-----~~~~~~~~~~~l~~~~~~~g-v~~~~-~~v~~v~~--------------- 84 (300)
T TIGR01292 42 ---TEVE----------NYP--GFP-----EGISGPELMEKMKEQAVKFG-AEIIY-EEVIKVDL--------------- 84 (300)
T ss_pred ---cccc----------ccC--CCC-----CCCChHHHHHHHHHHHHHcC-CeEEE-EEEEEEEe---------------
Confidence 0000 000 000 01233467788888888887 89988 79999875
Q ss_pred ccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200 216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR 249 (515)
Q Consensus 216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~ 249 (515)
....+.+...++.++.+|.||.|+|.+..
T Consensus 85 -----~~~~~~v~~~~~~~~~~d~liiAtG~~~~ 113 (300)
T TIGR01292 85 -----SDRPFKVKTGDGKEYTAKAVIIATGASAR 113 (300)
T ss_pred -----cCCeeEEEeCCCCEEEeCEEEECCCCCcc
Confidence 33557777778888999999999998653
No 106
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.02 E-value=1.5e-07 Score=98.22 Aligned_cols=70 Identities=21% Similarity=0.362 Sum_probs=46.1
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCC--CCCCCCCcE---EEeCHhHHHHHHHcCCch
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIK--KEDPPDPRV---STVTPATISFFKEIGAWQ 128 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~--~~~~~~~~~---~~l~~~~~~~l~~lgl~~ 128 (515)
+|+|||||+|||++|+.|++.| .+++|+|||+++.++.+.... .+......+ ..-.++..++++++|+.+
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G--~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~ 76 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKG--PDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLARKPSAPALVKELGLED 76 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhC--CCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcCCcHHHHHHHHHcCCcc
Confidence 6999999999999999999962 138999999999886432100 000000001 112345678888888754
No 107
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.00 E-value=6.2e-09 Score=110.51 Aligned_cols=40 Identities=25% Similarity=0.305 Sum_probs=35.8
Q ss_pred CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (515)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~ 95 (515)
.+..+||+|||||+|||++|+.+++. |.+|+|+||....+
T Consensus 13 ~~~~~DVlVIG~G~AGl~AAi~aae~----G~~VilleK~~~~~ 52 (541)
T PRK07804 13 WRDAADVVVVGSGVAGLTAALAARRA----GRRVLVVTKAALDD 52 (541)
T ss_pred cccccCEEEECccHHHHHHHHHHHHc----CCeEEEEEccCCCC
Confidence 34579999999999999999999996 89999999998654
No 108
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.98 E-value=3.4e-09 Score=110.99 Aligned_cols=37 Identities=27% Similarity=0.446 Sum_probs=34.0
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
+.++||||||||++||++|+.|++. |.+|+|+||.+.
T Consensus 2 ~~~~DVvVVG~G~aGl~AA~~aa~~----G~~V~vlEk~~~ 38 (466)
T PRK08274 2 ASMVDVLVIGGGNAALCAALAAREA----GASVLLLEAAPR 38 (466)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHC----CCeEEEEeCCCC
Confidence 4568999999999999999999996 999999999874
No 109
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.98 E-value=3.1e-09 Score=108.19 Aligned_cols=137 Identities=16% Similarity=0.168 Sum_probs=90.1
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHH----HHHHHc--CCc
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATI----SFFKEI--GAW 127 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~l~~l--gl~ 127 (515)
...+|+|||||||||++|..|.+. |++|+|+||...++.-+ ...+..- .+.+.+ ++.
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~----g~~v~vfEr~~~iGGlW-------------~y~~~~~~~~ss~Y~~l~tn~p 67 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLRE----GHEVVVFERTDDIGGLW-------------KYTENVEVVHSSVYKSLRTNLP 67 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHC----CCCceEEEecCCccceE-------------eecCcccccccchhhhhhccCC
Confidence 457899999999999999999996 99999999999884211 1111110 111111 111
Q ss_pred hhhhhhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCC-CceEEcCCeeEEEEeCCCCCC
Q 010200 128 QYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTE-FQKTIYPSRLTSMALLPSSSS 206 (515)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g-~v~i~~~~~v~~i~~~~~~~~ 206 (515)
.+.. ....++.. .....+..++.++.++|.+.++.-+ ...|.++++|..+..
T Consensus 68 Ke~~------------------~~~dfpf~---~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~------ 120 (448)
T KOG1399|consen 68 KEMM------------------GYSDFPFP---ERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDS------ 120 (448)
T ss_pred hhhh------------------cCCCCCCc---ccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEee------
Confidence 1111 11112111 1122345667799999999998876 236899999999876
Q ss_pred cccCCCCCcccccccC-CeeEEEcCCC----cEEEeeEEEEecCCCc
Q 010200 207 ISVDSTPSATTLFTKG-HLAKLDLSDG----TSLYAKLVVGADGGKS 248 (515)
Q Consensus 207 ~~~~~~~~~~~~~~~~-~~~~v~~~~g----~~~~ad~vV~AdG~~S 248 (515)
.. +.|.|...++ .+.-+|.||.|+|-+.
T Consensus 121 --------------~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~ 153 (448)
T KOG1399|consen 121 --------------IDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYV 153 (448)
T ss_pred --------------ccCCceeEEEecCCcceeEEEeeEEEEcccCcC
Confidence 22 5688777654 3678999999999983
No 110
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.97 E-value=9.1e-08 Score=100.90 Aligned_cols=65 Identities=23% Similarity=0.369 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200 171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 250 (515)
Q Consensus 171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v 250 (515)
..+.+.|.+.+++.| ++|+++++|++|.. +++....|.+.+|+++.+|.||.|.|.+..+
T Consensus 229 ~~l~~~L~~~~~~~G-~~i~~~~~V~~I~~-------------------~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~ 288 (493)
T TIGR02730 229 GQIAESLVKGLEKHG-GQIRYRARVTKIIL-------------------ENGKAVGVKLADGEKIYAKRIVSNATRWDTF 288 (493)
T ss_pred HHHHHHHHHHHHHCC-CEEEeCCeeeEEEe-------------------cCCcEEEEEeCCCCEEEcCEEEECCChHHHH
Confidence 578899999999998 99999999999976 1234566777888889999999999999888
Q ss_pred hhhcC
Q 010200 251 RELAG 255 (515)
Q Consensus 251 r~~l~ 255 (515)
++.+.
T Consensus 289 ~~Ll~ 293 (493)
T TIGR02730 289 GKLLK 293 (493)
T ss_pred HHhCC
Confidence 77763
No 111
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.97 E-value=4.2e-09 Score=108.66 Aligned_cols=135 Identities=16% Similarity=0.175 Sum_probs=81.9
Q ss_pred CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcE-EEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhh
Q 010200 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLS-VAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYV 130 (515)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~-V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~ 130 (515)
.+..+||+|||||++|+++|+.|+++ |.+ ++||||+..++...+. .
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~----g~~~~~i~Ek~~~~Gg~W~~-------~---------------------- 51 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQA----GVPDFVIFEKRDDVGGTWRY-------N---------------------- 51 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHc----CCCcEEEEEccCCcCCcchh-------c----------------------
Confidence 45678999999999999999999997 777 9999999987433220 0
Q ss_pred hhhhccccceEEEEeCCCccceeeecccCC--CCcceEEechHHHHHHHHHHHhcCC-CceEEcCCeeEEEEeCCCCCCc
Q 010200 131 QQHRHAYFDKMQVWDYTGLGYTKYNARDVN--KEILGCVVENKVLHSSLLSCMQNTE-FQKTIYPSRLTSMALLPSSSSI 207 (515)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~r~~l~~~L~~~~~~~g-~v~i~~~~~v~~i~~~~~~~~~ 207 (515)
....+... .......++..... ... -....+..++.+.+++.+ .-++.++++|..+..
T Consensus 52 ------ry~~l~~~--~p~~~~~~~~~p~~~~~~~----~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~------- 112 (443)
T COG2072 52 ------RYPGLRLD--SPKWLLGFPFLPFRWDEAF----APFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADW------- 112 (443)
T ss_pred ------cCCceEEC--CchheeccCCCccCCcccC----CCcccHHHHHHHHHHHcCceeEEEcccceEEEEe-------
Confidence 00111100 00001111111110 011 111224555555555554 245677777777766
Q ss_pred ccCCCCCcccccccCCeeEEEcCCCcE--EEeeEEEEecCCCch
Q 010200 208 SVDSTPSATTLFTKGHLAKLDLSDGTS--LYAKLVVGADGGKSR 249 (515)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~v~~~~g~~--~~ad~vV~AdG~~S~ 249 (515)
+++...++|++++|.+ +.+|.||.|+|..|.
T Consensus 113 -----------~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~ 145 (443)
T COG2072 113 -----------DEDTKRWTVTTSDGGTGELTADFVVVATGHLSE 145 (443)
T ss_pred -----------cCCCCeEEEEEcCCCeeeEecCEEEEeecCCCC
Confidence 2244679999988875 559999999999664
No 112
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.97 E-value=4.5e-09 Score=109.28 Aligned_cols=63 Identities=16% Similarity=0.005 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCc--EEEeeEEEEecCCC
Q 010200 170 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT--SLYAKLVVGADGGK 247 (515)
Q Consensus 170 r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~--~~~ad~vV~AdG~~ 247 (515)
-..+.+.|.+.+++.| ++|+++++|+++..+ +++ ...++.+...+++ .+.+|.||.|+|.+
T Consensus 129 g~~l~~~l~~~~~~~g-v~i~~~~~v~~l~~~-----------~~g-----~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~ 191 (439)
T TIGR01813 129 GAEIVQKLYKKAKKEG-IDTRLNSKVEDLIQD-----------DQG-----TVVGVVVKGKGKGIYIKAAKAVVLATGGF 191 (439)
T ss_pred HHHHHHHHHHHHHHcC-CEEEeCCEeeEeEEC-----------CCC-----cEEEEEEEeCCCeEEEEecceEEEecCCC
Confidence 3578899999999988 999999999999761 111 1123444444454 47899999999998
Q ss_pred ch
Q 010200 248 SR 249 (515)
Q Consensus 248 S~ 249 (515)
+.
T Consensus 192 ~~ 193 (439)
T TIGR01813 192 GS 193 (439)
T ss_pred CC
Confidence 87
No 113
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.96 E-value=2.3e-07 Score=98.24 Aligned_cols=64 Identities=17% Similarity=0.207 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200 171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 250 (515)
Q Consensus 171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v 250 (515)
..+.+.|.+.+++.| ++|+++++|++|.. +++..+.|.+++|+++.+|.||.|.+....+
T Consensus 219 ~~l~~al~~~~~~~G-~~i~~~~~V~~i~~-------------------~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~ 278 (502)
T TIGR02734 219 GALVAAMAKLAEDLG-GELRLNAEVIRIET-------------------EGGRATAVHLADGERLDADAVVSNADLHHTY 278 (502)
T ss_pred HHHHHHHHHHHHHCC-CEEEECCeEEEEEe-------------------eCCEEEEEEECCCCEEECCEEEECCcHHHHH
Confidence 567889999999888 89999999999976 1223467888888889999999999987766
Q ss_pred hhhc
Q 010200 251 RELA 254 (515)
Q Consensus 251 r~~l 254 (515)
.+.+
T Consensus 279 ~~l~ 282 (502)
T TIGR02734 279 RRLL 282 (502)
T ss_pred HHhc
Confidence 5554
No 114
>PRK07121 hypothetical protein; Validated
Probab=98.95 E-value=1.9e-08 Score=105.96 Aligned_cols=39 Identities=33% Similarity=0.457 Sum_probs=35.6
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~ 95 (515)
+..+||||||+|.|||++|+.+++. |.+|+|+||....+
T Consensus 18 ~~~~DVvVVGaG~AGl~AA~~aae~----G~~VillEK~~~~g 56 (492)
T PRK07121 18 DDEADVVVVGFGAAGACAAIEAAAA----GARVLVLERAAGAG 56 (492)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHC----CCeEEEEeCCCCCC
Confidence 4579999999999999999999996 99999999998754
No 115
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.93 E-value=1.3e-08 Score=108.76 Aligned_cols=64 Identities=17% Similarity=0.145 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeE-EEcCCCc--EEEeeEEEEecCCC
Q 010200 171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAK-LDLSDGT--SLYAKLVVGADGGK 247 (515)
Q Consensus 171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~g~--~~~ad~vV~AdG~~ 247 (515)
..+...|.+.+.+.++++++.++.++++..+ ++ ...++. +...+|+ .+.|+.||+|||..
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~------------~g-----~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~ 195 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVD------------DG-----HVRGLVAMNMMEGTLVQIRANAVVMATGGA 195 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEe------------CC-----EEEEEEEEEcCCCcEEEEECCEEEECCCCC
Confidence 4688888888877655999999999999760 01 111222 2345664 68999999999999
Q ss_pred chhh
Q 010200 248 SRVR 251 (515)
Q Consensus 248 S~vr 251 (515)
|.+.
T Consensus 196 ~~l~ 199 (582)
T PRK09231 196 GRVY 199 (582)
T ss_pred cCCC
Confidence 9874
No 116
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.93 E-value=9.4e-09 Score=108.82 Aligned_cols=115 Identities=27% Similarity=0.406 Sum_probs=83.4
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhh
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ 132 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~ 132 (515)
...+||+||||||||+++|+.|++. |++|+|+|+. ++ | .+. . ..+
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~----G~~v~li~~~--~G--------------G-~~~-~------~~~------- 253 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARK----GIRTGIVAER--FG--------------G-QVL-D------TMG------- 253 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHC----CCcEEEEecC--CC--------------C-eee-c------cCc-------
Confidence 4469999999999999999999996 9999999764 21 1 000 0 000
Q ss_pred hhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCC
Q 010200 133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST 212 (515)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~ 212 (515)
+. +. ..++ .....++.+.|.+.+++.+ ++++.+++|.++..
T Consensus 254 -----~~-----~~-----~~~~-----------~~~~~~l~~~l~~~~~~~g-v~i~~~~~V~~I~~------------ 294 (517)
T PRK15317 254 -----IE-----NF-----ISVP-----------ETEGPKLAAALEEHVKEYD-VDIMNLQRASKLEP------------ 294 (517)
T ss_pred -----cc-----cc-----CCCC-----------CCCHHHHHHHHHHHHHHCC-CEEEcCCEEEEEEe------------
Confidence 00 00 0000 1234578889999999988 99999999999976
Q ss_pred CCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200 213 PSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR 249 (515)
Q Consensus 213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~ 249 (515)
....+.+.+.+|.++.+|.||.|+|..+.
T Consensus 295 --------~~~~~~V~~~~g~~i~a~~vViAtG~~~r 323 (517)
T PRK15317 295 --------AAGLIEVELANGAVLKAKTVILATGARWR 323 (517)
T ss_pred --------cCCeEEEEECCCCEEEcCEEEECCCCCcC
Confidence 23457777788888999999999999763
No 117
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.93 E-value=6.8e-07 Score=93.37 Aligned_cols=69 Identities=20% Similarity=0.241 Sum_probs=49.4
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCC--CCCCCCcE----EEeCHhHHHHHHHcCCchh
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKK--EDPPDPRV----STVTPATISFFKEIGAWQY 129 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~--~~~~~~~~----~~l~~~~~~~l~~lgl~~~ 129 (515)
+|+|||||++||++|+.|++. |++|+|||+.+.++.+.+... .+.....| ....++..++++++|+.+.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~----G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~ 75 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADA----GHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDR 75 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccc
Confidence 589999999999999999996 999999999998865433211 11111112 1224778899999998543
No 118
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.91 E-value=2.6e-08 Score=106.39 Aligned_cols=64 Identities=17% Similarity=0.148 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeE-EEcCCCc--EEEeeEEEEecCC
Q 010200 170 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAK-LDLSDGT--SLYAKLVVGADGG 246 (515)
Q Consensus 170 r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~g~--~~~ad~vV~AdG~ 246 (515)
-..+.+.|.+.+.+.++++++.++.++++..+ ++ ...++. +...+|+ .+.|+.||+|||.
T Consensus 131 G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~------------~g-----~v~Gv~~~~~~~g~~~~i~AkaVILATGG 193 (580)
T TIGR01176 131 GFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD------------DG-----RVCGLVAIEMAEGRLVTILADAVVLATGG 193 (580)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCeEEEEEEee------------CC-----EEEEEEEEEcCCCcEEEEecCEEEEcCCC
Confidence 35788999988877655999999999999761 01 111222 2334664 6899999999999
Q ss_pred Cchh
Q 010200 247 KSRV 250 (515)
Q Consensus 247 ~S~v 250 (515)
.+.+
T Consensus 194 ~~~~ 197 (580)
T TIGR01176 194 AGRV 197 (580)
T ss_pred Cccc
Confidence 9975
No 119
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.2e-08 Score=99.19 Aligned_cols=115 Identities=22% Similarity=0.239 Sum_probs=78.3
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcE-EEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhh
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLS-VAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ 132 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~-V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~ 132 (515)
+.+||+|||||||||++|+.++|+ +++ ++|+|+.. + +..+ ..
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~----~l~~~li~~~~~-~---------------gg~~-----------~~------ 44 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARA----GLKVVLILEGGE-P---------------GGQL-----------TK------ 44 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHc----CCCcEEEEecCC-c---------------CCcc-----------cc------
Confidence 569999999999999999999997 888 66666654 2 1000 00
Q ss_pred hhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCC
Q 010200 133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST 212 (515)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~ 212 (515)
.. .+.+ ++... -.+.-.+|.+.+.+.+...+ +++.. ..|..++.
T Consensus 45 ------~~-~ven-------------ypg~~--~~~~g~~L~~~~~~~a~~~~-~~~~~-~~v~~v~~------------ 88 (305)
T COG0492 45 ------TT-DVEN-------------YPGFP--GGILGPELMEQMKEQAEKFG-VEIVE-DEVEKVEL------------ 88 (305)
T ss_pred ------ce-eecC-------------CCCCc--cCCchHHHHHHHHHHHhhcC-eEEEE-EEEEEEee------------
Confidence 00 0000 00000 12445678888888888777 78777 67777764
Q ss_pred CCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200 213 PSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 250 (515)
Q Consensus 213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v 250 (515)
.+...+|.++++. ++||.||.|+|....-
T Consensus 89 --------~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~ 117 (305)
T COG0492 89 --------EGGPFKVKTDKGT-YEAKAVIIATGAGARK 117 (305)
T ss_pred --------cCceEEEEECCCe-EEEeEEEECcCCcccC
Confidence 2226888888887 9999999999987654
No 120
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.90 E-value=1.3e-08 Score=106.44 Aligned_cols=158 Identities=16% Similarity=0.185 Sum_probs=94.2
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC-CCCCCCCCCCCCCCcEEEeCHhHHHHHHHcC-Cchhhhhh
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL-GKSNFIKKEDPPDPRVSTVTPATISFFKEIG-AWQYVQQH 133 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lg-l~~~~~~~ 133 (515)
|||+|||||+||+.+|..+++. |.+|+|+|+.... +..+|. +...|..-. ...+-++.+| ....+.+.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~----G~~v~Lie~~~~~~g~~~c~-----ps~gG~a~g-~l~rEidaLGG~~~~~~d~ 70 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARM----GAKTLLLTLNLDTIGKCSCN-----PAIGGPAKG-ILVKEIDALGGLMGKAADK 70 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHC----CCCEEEEecccccccCCCcc-----ccccccccc-hhhhhhhcccchHHHHHHh
Confidence 6999999999999999999996 8999999997542 222331 111111000 1122233332 11222111
Q ss_pred hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200 134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP 213 (515)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~ 213 (515)
.. ..+..........+ ......+++..+...+.+.+++.++++++.+ .|+++.. +
T Consensus 71 ~~---i~~r~ln~skgpAV---------~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~---------e--- 125 (617)
T TIGR00136 71 AG---LQFRVLNSSKGPAV---------RATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLIL---------E--- 125 (617)
T ss_pred hc---eeheecccCCCCcc---------cccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEE---------e---
Confidence 11 01111111000000 0111367899999999999999976888765 7888764 0
Q ss_pred CcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhc
Q 010200 214 SATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELA 254 (515)
Q Consensus 214 ~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l 254 (515)
+++....|.+.+|..+.|+.||.|+|.+..-+-++
T Consensus 126 ------~~g~V~GV~t~~G~~I~Ad~VILATGtfL~g~ihi 160 (617)
T TIGR00136 126 ------DNDEIKGVVTQDGLKFRAKAVIITTGTFLRGKIHI 160 (617)
T ss_pred ------cCCcEEEEEECCCCEEECCEEEEccCcccCCCEEe
Confidence 02244567778888999999999999997544444
No 121
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.90 E-value=2.1e-08 Score=105.42 Aligned_cols=65 Identities=15% Similarity=0.160 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCC-C--cEEEeeEEEEecCC
Q 010200 170 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD-G--TSLYAKLVVGADGG 246 (515)
Q Consensus 170 r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-g--~~~~ad~vV~AdG~ 246 (515)
-..+...|.+.+.+..+++|++++.|+++..+ ++....+...+ + ..+.++.||.|+|.
T Consensus 127 G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~-------------------~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG 187 (488)
T TIGR00551 127 GREVITTLVKKALNHPNIRIIEGENALDLLIE-------------------TGRVVGVWVWNRETVETCHADAVVLATGG 187 (488)
T ss_pred HHHHHHHHHHHHHhcCCcEEEECeEeeeeecc-------------------CCEEEEEEEEECCcEEEEEcCEEEECCCc
Confidence 35788999999987434999999999999750 11222233222 2 36899999999999
Q ss_pred Cchhhhh
Q 010200 247 KSRVREL 253 (515)
Q Consensus 247 ~S~vr~~ 253 (515)
+|.+...
T Consensus 188 ~~~~~~~ 194 (488)
T TIGR00551 188 AGKLYQY 194 (488)
T ss_pred ccCCCCC
Confidence 9986543
No 122
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.86 E-value=3e-08 Score=106.20 Aligned_cols=62 Identities=19% Similarity=0.211 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeE-EEcCCCc--EEEeeEEEEecCCC
Q 010200 171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAK-LDLSDGT--SLYAKLVVGADGGK 247 (515)
Q Consensus 171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~g~--~~~ad~vV~AdG~~ 247 (515)
..+...|.+.+.+.+ ++++.++.|+++..+ ++ ...++. +...+|+ .+.|+.||.|+|.+
T Consensus 135 ~~i~~~L~~~~~~~g-i~i~~~t~v~~L~~~------------~g-----~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~ 196 (575)
T PRK05945 135 HAILHELVNNLRRYG-VTIYDEWYVMRLILE------------DN-----QAKGVVMYHIADGRLEVVRAKAVMFATGGY 196 (575)
T ss_pred HHHHHHHHHHHhhCC-CEEEeCcEEEEEEEE------------CC-----EEEEEEEEEcCCCeEEEEECCEEEECCCCC
Confidence 578888999888877 999999999999750 00 111222 2334554 68999999999999
Q ss_pred chh
Q 010200 248 SRV 250 (515)
Q Consensus 248 S~v 250 (515)
+.+
T Consensus 197 ~~~ 199 (575)
T PRK05945 197 GRV 199 (575)
T ss_pred cCC
Confidence 875
No 123
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.86 E-value=1.5e-08 Score=104.66 Aligned_cols=63 Identities=21% Similarity=0.237 Sum_probs=44.1
Q ss_pred chHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEE-cCCCc--EEEeeEEEEecC
Q 010200 169 ENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLD-LSDGT--SLYAKLVVGADG 245 (515)
Q Consensus 169 ~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~g~--~~~ad~vV~AdG 245 (515)
....+...|.+.+++.| ++|+++++++++..+ ++ ...++.+. ..+|+ ++.|+.||.|+|
T Consensus 139 ~g~~~~~~l~~~~~~~g-v~i~~~~~~~~Li~e------------~g-----~V~Gv~~~~~~~g~~~~i~A~aVIlAtG 200 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAG-VDIRFNTRVTDLITE------------DG-----RVTGVVAENPADGEFVRIKAKAVILATG 200 (417)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEESEEEEEEEEE------------TT-----EEEEEEEEETTTCEEEEEEESEEEE---
T ss_pred cHHHHHHHHHHHHhhcC-eeeeccceeeeEEEe------------CC-----ceeEEEEEECCCCeEEEEeeeEEEeccC
Confidence 45788999999999999 999999999999871 00 22233343 23454 688999999999
Q ss_pred CCch
Q 010200 246 GKSR 249 (515)
Q Consensus 246 ~~S~ 249 (515)
..+.
T Consensus 201 G~~~ 204 (417)
T PF00890_consen 201 GFGG 204 (417)
T ss_dssp -BGG
T ss_pred cccc
Confidence 9995
No 124
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.86 E-value=2e-08 Score=105.53 Aligned_cols=146 Identities=18% Similarity=0.168 Sum_probs=83.5
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (515)
-+|+|||||++||++|..|.+. |++|++|||.+..+.-.... +....+. -.+++.+..
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~----g~~~~~fE~~~~iGG~W~~~-~~~~~g~--------------~~~y~sl~~--- 59 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEE----GLEVTCFEKSDDIGGLWRYT-ENPEDGR--------------SSVYDSLHT--- 59 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHT----T-EEEEEESSSSSSGGGCHS-TTCCCSE--------------GGGSTT-B----
T ss_pred CEEEEECccHHHHHHHHHHHHC----CCCCeEEecCCCCCccCeeC-CcCCCCc--------------cccccceEE---
Confidence 3699999999999999999996 99999999999885222100 0000000 001111111
Q ss_pred cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCC-ceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEF-QKTIYPSRLTSMALLPSSSSISVDSTPS 214 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~-v~i~~~~~v~~i~~~~~~~~~~~~~~~~ 214 (515)
........|..-..+...+ -..++.++.++|.+.++..+- -.|+++++|++++.. .+.
T Consensus 60 ----------n~sk~~~~fsdfp~p~~~p-~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~---------~d~- 118 (531)
T PF00743_consen 60 ----------NTSKEMMAFSDFPFPEDYP-DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERD---------PDF- 118 (531)
T ss_dssp ----------SS-GGGSCCTTS-HCCCCS-SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEE---------TTT-
T ss_pred ----------eeCchHhcCCCcCCCCCCC-CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeec---------ccc-
Confidence 0011111111100111111 136789999999999987751 369999999999871 111
Q ss_pred cccccccCCeeEEEcCC-Cc--EEEeeEEEEecCCCch
Q 010200 215 ATTLFTKGHLAKLDLSD-GT--SLYAKLVVGADGGKSR 249 (515)
Q Consensus 215 ~~~~~~~~~~~~v~~~~-g~--~~~ad~vV~AdG~~S~ 249 (515)
.....|+|++.+ |+ +..+|.||.|+|.++.
T Consensus 119 -----~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~ 151 (531)
T PF00743_consen 119 -----SATGKWEVTTENDGKEETEEFDAVVVATGHFSK 151 (531)
T ss_dssp -----T-ETEEEEEETTTTEEEEEEECEEEEEE-SSSC
T ss_pred -----CCCceEEEEeecCCeEEEEEeCeEEEcCCCcCC
Confidence 122467887754 33 4568999999999874
No 125
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.86 E-value=3.2e-08 Score=106.13 Aligned_cols=40 Identities=33% Similarity=0.547 Sum_probs=35.1
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCC---cEEEEEcCCCCCCC
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKH---LSVAIIDSNPALGK 96 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G---~~V~v~E~~~~~~~ 96 (515)
..++||+|||||+|||++|+.+++. | .+|+|+||....+.
T Consensus 3 ~~~~DVlVVG~G~AGl~AA~~Aa~~----G~~~~~V~lleK~~~~~~ 45 (577)
T PRK06069 3 VLKYDVVIVGSGLAGLRAAVAAAER----SGGKLSVAVVSKTQPMRS 45 (577)
T ss_pred ceecCEEEECccHHHHHHHHHHHHh----CCCCCcEEEEEcccCCCC
Confidence 3468999999999999999999996 6 89999999986643
No 126
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.84 E-value=2.7e-08 Score=106.70 Aligned_cols=64 Identities=20% Similarity=0.112 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEE-EcCCCc--EEEeeEEEEecCCC
Q 010200 171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKL-DLSDGT--SLYAKLVVGADGGK 247 (515)
Q Consensus 171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~g~--~~~ad~vV~AdG~~ 247 (515)
..+...|.+.+.+.| +++++++.++++..+ ++ ...++.+ ...+|+ .+.|+.||.|+|.+
T Consensus 129 ~~i~~~L~~~~~~~g-v~i~~~~~v~~L~~~------------~g-----~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~ 190 (566)
T TIGR01812 129 HALLHTLYEQCLKLG-VSFFNEYFALDLIHD------------DG-----RVRGVVAYDLKTGEIVFFRAKAVVLATGGY 190 (566)
T ss_pred HHHHHHHHHHHHHcC-CEEEeccEEEEEEEe------------CC-----EEEEEEEEECCCCcEEEEECCeEEECCCcc
Confidence 467888888888887 999999999999760 01 1112222 234564 68999999999999
Q ss_pred chhhh
Q 010200 248 SRVRE 252 (515)
Q Consensus 248 S~vr~ 252 (515)
+.+..
T Consensus 191 ~~~~~ 195 (566)
T TIGR01812 191 GRIYK 195 (566)
T ss_pred cCCCC
Confidence 97654
No 127
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.84 E-value=2.2e-08 Score=105.87 Aligned_cols=114 Identities=25% Similarity=0.299 Sum_probs=81.0
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhh
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ 132 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~ 132 (515)
...+||+||||||||+++|+.|++. |++|+|+|.. ++ |.... ..
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~----G~~v~li~~~--~G--------------G~~~~--------~~-------- 253 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARK----GLRTAMVAER--IG--------------GQVKD--------TV-------- 253 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC----CCcEEEEecC--CC--------------Ccccc--------Cc--------
Confidence 4569999999999999999999996 9999999743 21 00000 00
Q ss_pred hhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCC
Q 010200 133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST 212 (515)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~ 212 (515)
.+.. + ... . .....++...+.+.+++.+ ++++.+++|+++..
T Consensus 254 ----~~~~--~--------~~~-------~----~~~~~~l~~~l~~~l~~~g-v~i~~~~~V~~I~~------------ 295 (515)
T TIGR03140 254 ----GIEN--L--------ISV-------P----YTTGSQLAANLEEHIKQYP-IDLMENQRAKKIET------------ 295 (515)
T ss_pred ----Cccc--c--------ccc-------C----CCCHHHHHHHHHHHHHHhC-CeEEcCCEEEEEEe------------
Confidence 0000 0 000 0 0234567788888888887 99999999999975
Q ss_pred CCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCc
Q 010200 213 PSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKS 248 (515)
Q Consensus 213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S 248 (515)
..+.+.+..++|.++.+|.||.|+|...
T Consensus 296 --------~~~~~~v~~~~g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 296 --------EDGLIVVTLESGEVLKAKSVIVATGARW 323 (515)
T ss_pred --------cCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 3345677778888899999999999874
No 128
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.83 E-value=1.2e-07 Score=89.64 Aligned_cols=201 Identities=14% Similarity=0.114 Sum_probs=105.7
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCC--CCC---CCCCCCcEEEeCHhHHHHHH----Hc
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNF--IKK---EDPPDPRVSTVTPATISFFK----EI 124 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~~~l~----~l 124 (515)
.+.||+|||||..|++.|+.|++.-...|++|+|+||+.......- .++ .......-+.++--+.++|+ .+
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSlpEnIqmSLF~a~Flr~a~ehl 164 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSLPENIQMSLFTAEFLRNAREHL 164 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecccchhhhhhhHHHHHHHHHHHhh
Confidence 4679999999999999999998643335899999999986532210 000 00011111222222333443 23
Q ss_pred CCchhhh-hhhccccceEEEEe-------------------------CCCccceeeecccCCCCcce-------EEechH
Q 010200 125 GAWQYVQ-QHRHAYFDKMQVWD-------------------------YTGLGYTKYNARDVNKEILG-------CVVENK 171 (515)
Q Consensus 125 gl~~~~~-~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~-------~~i~r~ 171 (515)
++.+.-. ...+.+...+.+-. .+. ....|++-.+..-..+ -.++.-
T Consensus 165 ~~~d~~~vdl~f~P~GyL~LA~ee~ae~m~s~~kvQ~e~GAk~eLls~d~-Lt~rfPwlntegVaLa~lG~e~EGwfdpw 243 (509)
T KOG2853|consen 165 GILDSEQVDLNFFPTGYLRLASEEEAEMMRSNSKVQNELGAKVELLSPDE-LTKRFPWLNTEGVALASLGVEKEGWFDPW 243 (509)
T ss_pred ccccCCCCCcccCCCceEEEcchhhHHHHHHhHHHHHhhcchhcccCHHH-HhhhCCcccccceeeeecccccccccCHH
Confidence 3321100 00111111111110 000 0011222111111111 135677
Q ss_pred HHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCc--EEEeeEEEEecCCCch
Q 010200 172 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT--SLYAKLVVGADGGKSR 249 (515)
Q Consensus 172 ~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~--~~~ad~vV~AdG~~S~ 249 (515)
.|...+++.+..+| +++.-| +|++++...+........+....---+.-.++.|...|+. +++++++|.|.|+||-
T Consensus 244 ~LLs~~rrk~~~lG-v~f~~G-eV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAGa~s~ 321 (509)
T KOG2853|consen 244 ALLSGIRRKAITLG-VQFVKG-EVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAGAWSG 321 (509)
T ss_pred HHHHHHHHHhhhhc-ceEecc-eEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccCccHH
Confidence 88899999999998 888766 9999998555433222222110000012245667766653 7999999999999996
Q ss_pred h-hhhcCCc
Q 010200 250 V-RELAGFK 257 (515)
Q Consensus 250 v-r~~l~~~ 257 (515)
. .+..|+.
T Consensus 322 QvArlAgIG 330 (509)
T KOG2853|consen 322 QVARLAGIG 330 (509)
T ss_pred HHHHHhccC
Confidence 4 4444443
No 129
>PLN02268 probable polyamine oxidase
Probab=98.82 E-value=1.1e-06 Score=91.44 Aligned_cols=66 Identities=24% Similarity=0.386 Sum_probs=46.6
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCC--CCCCCCcEEEe-----CHhHHHHHHHcCC
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKK--EDPPDPRVSTV-----TPATISFFKEIGA 126 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~--~~~~~~~~~~l-----~~~~~~~l~~lgl 126 (515)
+|+|||||++||++|+.|.+. |++|+|+|+++.++.+.+... +......+..+ .....++++++|+
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~----g~~v~vlEa~~r~GGri~t~~~~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl 74 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDA----SFKVTLLESRDRIGGRVHTDYSFGFPVDMGASWLHGVCNENPLAPLIGRLGL 74 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhC----CCeEEEEeCCCCCCceeeecCcCCcccCCCCeeEeccCCCchHHHHHHHhCC
Confidence 799999999999999999996 999999999999876654211 11111122222 2224577888887
No 130
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.82 E-value=1.3e-08 Score=109.49 Aligned_cols=38 Identities=29% Similarity=0.366 Sum_probs=34.5
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~ 95 (515)
..+||+|||||+|||++|+.+++. |.+|+|+||....+
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~----G~~VilveK~~~~~ 86 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEH----GFNTACITKLFPTR 86 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhc----CCcEEEEEcCCCCC
Confidence 468999999999999999999996 99999999987654
No 131
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.81 E-value=4.8e-08 Score=104.14 Aligned_cols=114 Identities=18% Similarity=0.335 Sum_probs=76.8
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (515)
+.|||+|||||||||++|+.|++. |++|+|||+.. .+ |...... .
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~----g~~V~liE~~~-~G--------------G~~~~~~------------~---- 47 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRA----KLDTLIIEKDD-FG--------------GQITITS------------E---- 47 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHC----CCCEEEEecCC-CC--------------ceEEecc------------c----
Confidence 459999999999999999999996 99999999864 21 1110000 0
Q ss_pred hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200 134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP 213 (515)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~ 213 (515)
+ .+..+. ..+....+.+.+.+.+.+.+ ++++ +++|+.+..
T Consensus 48 -------i--~~~pg~----------------~~~~~~~l~~~l~~~~~~~g-v~~~-~~~V~~i~~------------- 87 (555)
T TIGR03143 48 -------V--VNYPGI----------------LNTTGPELMQEMRQQAQDFG-VKFL-QAEVLDVDF------------- 87 (555)
T ss_pred -------c--ccCCCC----------------cCCCHHHHHHHHHHHHHHcC-CEEe-ccEEEEEEe-------------
Confidence 0 000000 01234567778888888877 8876 678888865
Q ss_pred CcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200 214 SATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 250 (515)
Q Consensus 214 ~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v 250 (515)
....+.+...++ ++.++.||.|+|++...
T Consensus 88 -------~~~~~~V~~~~g-~~~a~~lVlATGa~p~~ 116 (555)
T TIGR03143 88 -------DGDIKTIKTARG-DYKTLAVLIATGASPRK 116 (555)
T ss_pred -------cCCEEEEEecCC-EEEEeEEEECCCCccCC
Confidence 223456666555 58999999999997653
No 132
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.81 E-value=1.2e-08 Score=106.55 Aligned_cols=60 Identities=23% Similarity=0.163 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200 171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 250 (515)
Q Consensus 171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v 250 (515)
..+.+.|.+.+++.| ++++.+ .++.+.. +++..+.+.. ++..+.++.||.|+|.+|.+
T Consensus 120 ~~i~~~L~~~~~~~g-v~i~~~-~v~~l~~-------------------~~g~v~Gv~~-~g~~i~a~~VVLATGG~~~~ 177 (466)
T PRK08401 120 KHIIKILYKHARELG-VNFIRG-FAEELAI-------------------KNGKAYGVFL-DGELLKFDATVIATGGFSGL 177 (466)
T ss_pred HHHHHHHHHHHHhcC-CEEEEe-EeEEEEe-------------------eCCEEEEEEE-CCEEEEeCeEEECCCcCcCC
Confidence 568899999998887 898876 7888764 0112233443 56679999999999999987
Q ss_pred hh
Q 010200 251 RE 252 (515)
Q Consensus 251 r~ 252 (515)
..
T Consensus 178 ~~ 179 (466)
T PRK08401 178 FK 179 (466)
T ss_pred CC
Confidence 54
No 133
>PLN02576 protoporphyrinogen oxidase
Probab=98.81 E-value=2e-06 Score=90.94 Aligned_cols=41 Identities=37% Similarity=0.558 Sum_probs=35.8
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS 97 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~ 97 (515)
.++||+|||||++||++|+.|++. .|++|+|+|+++.++.+
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~---~g~~v~vlEa~~rvGGr 51 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASK---HGVNVLVTEARDRVGGN 51 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHh---cCCCEEEEecCCCCCCc
Confidence 457999999999999999999994 17999999999988644
No 134
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.80 E-value=2.8e-08 Score=102.65 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=32.6
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~ 95 (515)
..+||||||+|.|||++|+.+++ |.+|+|+||.+..+
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~~-----G~~V~lleK~~~~g 39 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLRK-----DLKILMVSKGKLNE 39 (433)
T ss_pred ccccEEEECchHHHHHHHHHhcc-----CCCEEEEecCCCCC
Confidence 46899999999999999999853 89999999988653
No 135
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.80 E-value=5.9e-08 Score=104.32 Aligned_cols=39 Identities=26% Similarity=0.426 Sum_probs=33.8
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
..+||+|||||+|||++|+.+++.+ +|.+|+|+||....
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~--~G~~V~lieK~~~~ 48 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWA--PDLKVLIVEKANIK 48 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhC--CCCeEEEEECCCcC
Confidence 4589999999999999999999841 18999999998864
No 136
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.80 E-value=4e-08 Score=102.95 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCC
Q 010200 171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG 246 (515)
Q Consensus 171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~ 246 (515)
..+.++|.+.+++.| ++|+++++|++|.. +++..+++...+|+.+++|.||.+...
T Consensus 224 ~al~~aL~~~~~~~G-g~I~~~~~V~~I~v-------------------~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHG-GEIRTGAEVSQILV-------------------EGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcC-CEEECCCceEEEEE-------------------eCCcceEEeccccceeccceeEecCch
Confidence 578899999999998 99999999999987 133467888888877999999988776
No 137
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.80 E-value=7.7e-08 Score=103.17 Aligned_cols=39 Identities=33% Similarity=0.457 Sum_probs=34.5
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~ 95 (515)
...+||+|||||+|||++|+.+++. |.+|+|+||....+
T Consensus 10 ~~~~DVlVIG~G~AGl~AAi~Aa~~----G~~V~vleK~~~~~ 48 (591)
T PRK07057 10 RRKFDVVIVGAGGSGMRASLQLARA----GLSVAVLSKVFPTR 48 (591)
T ss_pred cccCCEEEECccHHHHHHHHHHHHC----CCcEEEEeccCCCC
Confidence 3568999999999999999999996 89999999986543
No 138
>PLN02487 zeta-carotene desaturase
Probab=98.79 E-value=3.2e-06 Score=89.52 Aligned_cols=73 Identities=23% Similarity=0.307 Sum_probs=51.5
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCC--CCCCCCCCCcEEE----eCHhHHHHHHHcCCch
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNF--IKKEDPPDPRVST----VTPATISFFKEIGAWQ 128 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~--~~~~~~~~~~~~~----l~~~~~~~l~~lgl~~ 128 (515)
..+|+|||||++||++|+.|++. |++|+|||+.+.++.... ....+.....|.. ..++..++++++|+.+
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~----g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~ 150 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQ----GHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADE 150 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC----CCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCcc
Confidence 46999999999999999999996 999999999998753211 0001111111221 2467889999999876
Q ss_pred hhh
Q 010200 129 YVQ 131 (515)
Q Consensus 129 ~~~ 131 (515)
.+.
T Consensus 151 ~~~ 153 (569)
T PLN02487 151 NLL 153 (569)
T ss_pred ccc
Confidence 653
No 139
>PLN02815 L-aspartate oxidase
Probab=98.78 E-value=1.1e-07 Score=101.41 Aligned_cols=40 Identities=28% Similarity=0.496 Sum_probs=35.0
Q ss_pred CCCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200 51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (515)
Q Consensus 51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~ 95 (515)
.....+||+|||+|.|||++|+.+++. | +|+|+||.+..+
T Consensus 25 ~~~~~~DVlVVG~G~AGl~AAl~Aae~----G-~VvlleK~~~~g 64 (594)
T PLN02815 25 ESTKYFDFLVIGSGIAGLRYALEVAEY----G-TVAIITKDEPHE 64 (594)
T ss_pred CcccccCEEEECccHHHHHHHHHHhhC----C-CEEEEECCCCCC
Confidence 344568999999999999999999996 8 899999998754
No 140
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.78 E-value=4.7e-08 Score=98.15 Aligned_cols=122 Identities=16% Similarity=0.178 Sum_probs=77.8
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (515)
.||+|||||++|+.+|+.|++. |++|+|+|+++........ ......+....+..+...+...|++..-...
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~----Gl~V~LiE~rp~~~s~a~~--~~~~~ervca~Slgs~~ll~a~Gll~~em~~-- 74 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKR----GVPVELYEMRPVKKTPAHH--TDGFAELVCSNSFRSDSLTNAVGLLKEEMRR-- 74 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhC----CCcEEEEEccCccCccccc--CccccccccchhhhhhhHHhcCCchHHHHHH--
Confidence 5899999999999999999996 9999999988765321100 0001123334555666777888887632221
Q ss_pred cccceEEEEeCCCccceeeecccCCCCcce-EEechHHHHHHHHHHHhcCCCceEEcCCeeEEE
Q 010200 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILG-CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSM 198 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i 198 (515)
...+.+... . ....+..+ ..++|..+.+.|.+.+++.++++++ ..+|+++
T Consensus 75 --lgsl~~~aa-d---------~~~vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l 125 (436)
T PRK05335 75 --LGSLIMEAA-D---------AHRVPAGGALAVDREGFSEYVTEALENHPLITVI-REEVTEI 125 (436)
T ss_pred --hcchheecc-c---------ccCCCCccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhcc
Confidence 111111110 0 00111222 4688999999999999998888988 4577776
No 141
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.77 E-value=1.1e-07 Score=98.83 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=36.8
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS 97 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~ 97 (515)
...+|+|||||+|||++|+.|++.+-.+|.+|+|||+.+.++.+
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~ 64 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGS 64 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCC
Confidence 45789999999999999999998532247899999999987644
No 142
>PRK08275 putative oxidoreductase; Provisional
Probab=98.77 E-value=8.7e-08 Score=102.23 Aligned_cols=39 Identities=23% Similarity=0.333 Sum_probs=34.0
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
..+||+|||||+|||++|+.+++.+ .|.+|+|+||.+..
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g--~g~~VilveK~~~~ 46 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERN--PALRVLLLEKANVK 46 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhC--CCCeEEEEeCCCCC
Confidence 4689999999999999999999852 27899999999864
No 143
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.77 E-value=6.5e-08 Score=100.63 Aligned_cols=33 Identities=33% Similarity=0.427 Sum_probs=31.4
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN 91 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~ 91 (515)
+|||+||||||+|+++|+.+++. |++|+|+|+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~----G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANH----GAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhC----CCcEEEEecC
Confidence 59999999999999999999996 9999999985
No 144
>PRK12839 hypothetical protein; Provisional
Probab=98.76 E-value=5.7e-08 Score=103.54 Aligned_cols=42 Identities=29% Similarity=0.435 Sum_probs=36.9
Q ss_pred CCCCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200 50 TNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (515)
Q Consensus 50 ~~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~ 95 (515)
++++..+||+|||+|++|+++|+.|++. |.+|+|+||....+
T Consensus 3 ~~~~~~~dv~ViG~G~aG~~aa~~~~~~----g~~v~~iek~~~~g 44 (572)
T PRK12839 3 PSMTHTYDVVVVGSGAGGLSAAVAAAYG----GAKVLVVEKASTCG 44 (572)
T ss_pred CCcCCcCCEEEECcCHHHHHHHHHHHHC----CCcEEEEecCCCCC
Confidence 3455679999999999999999999996 99999999987654
No 145
>PLN02568 polyamine oxidase
Probab=98.76 E-value=2.2e-06 Score=90.68 Aligned_cols=46 Identities=15% Similarity=0.400 Sum_probs=37.3
Q ss_pred CCCCccEEEECCCHHHHHHHHHHhcCCC-CCCcEEEEEcCCCCCCCC
Q 010200 52 NDDQYDVAVVGGGMVGMALACSLASMPL-TKHLSVAIIDSNPALGKS 97 (515)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~-~~G~~V~v~E~~~~~~~~ 97 (515)
+++..||+|||||++||++|..|++.+. ..|++|+|||++..++.+
T Consensus 2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr 48 (539)
T PLN02568 2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGR 48 (539)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCe
Confidence 4456899999999999999999998620 124999999999988644
No 146
>PLN02676 polyamine oxidase
Probab=98.76 E-value=4.2e-06 Score=87.72 Aligned_cols=40 Identities=25% Similarity=0.496 Sum_probs=35.4
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPALGKS 97 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~~~~~ 97 (515)
..+||+|||||++||++|+.|++. |+ +|+|+|++..++..
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~----g~~~v~vlE~~~~~GG~ 65 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEA----GIEDILILEATDRIGGR 65 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHc----CCCcEEEecCCCCCCCc
Confidence 357999999999999999999996 87 69999999987644
No 147
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.75 E-value=1e-07 Score=101.68 Aligned_cols=38 Identities=34% Similarity=0.532 Sum_probs=34.3
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~ 95 (515)
..+||+|||||.|||++|+.+++. |.+|+|+||.+..+
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~----G~~V~lveK~~~~~ 41 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASA----GFKVAVISKVFPTR 41 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHC----CCcEEEEEccCCCC
Confidence 468999999999999999999996 99999999987543
No 148
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.75 E-value=5.8e-08 Score=104.79 Aligned_cols=37 Identities=27% Similarity=0.482 Sum_probs=33.7
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
.++||+|||||.|||++|+.+++. |.+|+|+||...+
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~----G~~VilieK~~~~ 70 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGEL----GYNVKVFCYQDSP 70 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHc----CCcEEEEecCCCC
Confidence 468999999999999999999996 9999999997655
No 149
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.75 E-value=4e-06 Score=87.72 Aligned_cols=71 Identities=21% Similarity=0.245 Sum_probs=48.6
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCC--CCCCCCCCcEE----EeCHhHHHHHHHcCCchhh
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFI--KKEDPPDPRVS----TVTPATISFFKEIGAWQYV 130 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~--~~~~~~~~~~~----~l~~~~~~~l~~lgl~~~~ 130 (515)
+|+|||||++||++|+.|++. |++|+|+|+.+.++.+... ...+.....|. ...++..++++++|+.+.+
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~----G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~ 76 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDA----GHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNL 76 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHC----CCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCcccc
Confidence 589999999999999999996 9999999999987543211 01111111111 1246677888888886654
Q ss_pred h
Q 010200 131 Q 131 (515)
Q Consensus 131 ~ 131 (515)
.
T Consensus 77 ~ 77 (474)
T TIGR02732 77 L 77 (474)
T ss_pred c
Confidence 3
No 150
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.74 E-value=2.1e-07 Score=100.38 Aligned_cols=38 Identities=29% Similarity=0.364 Sum_probs=34.3
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~ 95 (515)
..+||||||||+|||++|+.+++. |.+|+|+||....+
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~----G~~V~lieK~~~~~ 44 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARER----GLRVAVVCKSLFGK 44 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHC----CCCEEEEeccCCCC
Confidence 468999999999999999999996 99999999987553
No 151
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.74 E-value=6.8e-08 Score=101.08 Aligned_cols=38 Identities=24% Similarity=0.376 Sum_probs=34.1
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
+.+|||+||||||+|+.+|..|++. |++|+|+|+.+..
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~----G~~V~lie~~~~~ 39 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADL----GLETVCVERYSTL 39 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCcc
Confidence 3469999999999999999999996 9999999997644
No 152
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.74 E-value=8.4e-08 Score=100.40 Aligned_cols=38 Identities=29% Similarity=0.421 Sum_probs=34.6
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
+..|||+||||||+|+++|+.|++. |++|+|+|+...+
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~----G~~v~liE~~~~~ 40 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKL----GKRVAVIERYRNV 40 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC----CCEEEEEeccccc
Confidence 4569999999999999999999996 9999999997655
No 153
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.74 E-value=4e-08 Score=105.66 Aligned_cols=38 Identities=29% Similarity=0.370 Sum_probs=34.5
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~ 95 (515)
.++||+|||||.|||++|+.+++. |.+|+|+||....+
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~----G~~V~lveK~~~~~ 65 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVEL----GYKTACISKLFPTR 65 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHc----CCcEEEEeccCCCC
Confidence 468999999999999999999996 99999999987654
No 154
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.73 E-value=2.2e-07 Score=99.06 Aligned_cols=63 Identities=16% Similarity=0.162 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEc-CCCc--EEEeeEEEEecCCC
Q 010200 171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL-SDGT--SLYAKLVVGADGGK 247 (515)
Q Consensus 171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~g~--~~~ad~vV~AdG~~ 247 (515)
..+...|.+.+++.| ++|++++.++++..+ +++ ...++.+.. .+|+ .+.|+.||.|+|..
T Consensus 134 ~~i~~~L~~~~~~~g-v~i~~~t~v~~Li~~-----------~~~-----~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~ 196 (543)
T PRK06263 134 HEMMMGLMEYLIKER-IKILEEVMAIKLIVD-----------ENR-----EVIGAIFLDLRNGEIFPIYAKATILATGGA 196 (543)
T ss_pred HHHHHHHHHHHhcCC-CEEEeCeEeeeeEEe-----------CCc-----EEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence 567888888888876 999999999999761 000 011222222 4554 68999999999998
Q ss_pred chh
Q 010200 248 SRV 250 (515)
Q Consensus 248 S~v 250 (515)
+.+
T Consensus 197 ~~~ 199 (543)
T PRK06263 197 GQL 199 (543)
T ss_pred CCC
Confidence 853
No 155
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.73 E-value=3.5e-07 Score=97.60 Aligned_cols=39 Identities=36% Similarity=0.581 Sum_probs=35.4
Q ss_pred CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
...++||+|||+|++|+++|+.|++. |++|+||||.+.+
T Consensus 4 ~~~~~DvvVvG~G~aG~~aA~~aa~~----G~~v~llEk~~~~ 42 (557)
T PRK07843 4 TVQEYDVVVVGSGAAGMVAALTAAHR----GLSTVVVEKAPHY 42 (557)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHC----CCCEEEEeCCCCC
Confidence 34579999999999999999999996 9999999998765
No 156
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.72 E-value=8.5e-08 Score=100.37 Aligned_cols=35 Identities=37% Similarity=0.535 Sum_probs=32.8
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
..|||+||||||+|+++|+.|+++ |++|+|+|+..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~----G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQL----GLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHC----CCcEEEEeccc
Confidence 469999999999999999999996 99999999876
No 157
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.72 E-value=8.5e-08 Score=102.69 Aligned_cols=38 Identities=24% Similarity=0.360 Sum_probs=34.1
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~ 95 (515)
..+||+|||||.|||++|+.+++. |.+|+|+||....+
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~----G~~V~lleK~~~~~ 43 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQS----GQSCALLSKVFPTR 43 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHc----CCcEEEEEccCCCC
Confidence 358999999999999999999996 99999999987653
No 158
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.72 E-value=2.9e-08 Score=106.59 Aligned_cols=38 Identities=32% Similarity=0.413 Sum_probs=34.2
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~ 95 (515)
..+||||||||+|||++|+.+++. |.+|+|+||....+
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~----G~~V~lveK~~~~~ 48 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEA----GLKTACITKVFPTR 48 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHc----CCcEEEEEccCCCC
Confidence 468999999999999999999996 89999999987543
No 159
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.72 E-value=5e-08 Score=104.01 Aligned_cols=35 Identities=34% Similarity=0.506 Sum_probs=33.2
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
.++||||||+|.|||++|+.+++. |.+|+|+||.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~----G~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADA----GKRVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHC----CCeEEEEeCCC
Confidence 568999999999999999999996 99999999998
No 160
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.71 E-value=2.9e-07 Score=97.11 Aligned_cols=36 Identities=25% Similarity=0.447 Sum_probs=32.6
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~ 95 (515)
.+||+|||+|.|||++|+.+++ |.+|+|+||.+..+
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-----g~~V~lveK~~~~~ 38 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-----EYNVIIITKKTKRN 38 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-----CCCEEEEeccCCCC
Confidence 5799999999999999999976 78999999998653
No 161
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.71 E-value=7.5e-08 Score=100.97 Aligned_cols=35 Identities=26% Similarity=0.567 Sum_probs=32.6
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN 91 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~ 91 (515)
...|||+||||||+|+++|+.|++. |++|+|+|+.
T Consensus 2 ~~~ydvvVIG~GpaG~~aA~~aa~~----G~~v~lie~~ 36 (472)
T PRK05976 2 AKEYDLVIIGGGPGGYVAAIRAGQL----GLKTALVEKG 36 (472)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC----CCeEEEEEcc
Confidence 3579999999999999999999996 9999999986
No 162
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.70 E-value=2.2e-07 Score=99.64 Aligned_cols=66 Identities=21% Similarity=0.200 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCC-CCcccccccCCeeEE-EcCCCc--EEEeeEEEEecCC
Q 010200 171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST-PSATTLFTKGHLAKL-DLSDGT--SLYAKLVVGADGG 246 (515)
Q Consensus 171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v-~~~~g~--~~~ad~vV~AdG~ 246 (515)
..+...|.+.+.+.| ++|+.++.|+++.. +++ +++ ...++.+ ...+|+ .+.|+.||.|+|.
T Consensus 140 ~~i~~~L~~~~~~~g-v~i~~~~~v~~Li~---------~~~~~~g-----~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 204 (583)
T PRK08205 140 HMILQTLYQNCVKHG-VEFFNEFYVLDLLL---------TETPSGP-----VAAGVVAYELATGEIHVFHAKAVVFATGG 204 (583)
T ss_pred HHHHHHHHHHHHhcC-CEEEeCCEEEEEEe---------cCCccCC-----cEEEEEEEEcCCCeEEEEEeCeEEECCCC
Confidence 568889999998887 99999999999975 110 001 1122322 234554 6899999999999
Q ss_pred Cchhh
Q 010200 247 KSRVR 251 (515)
Q Consensus 247 ~S~vr 251 (515)
.+.+-
T Consensus 205 ~~~~~ 209 (583)
T PRK08205 205 SGRVY 209 (583)
T ss_pred CcccC
Confidence 98653
No 163
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.69 E-value=1.1e-07 Score=83.69 Aligned_cols=35 Identities=29% Similarity=0.529 Sum_probs=28.8
Q ss_pred EEECCCHHHHHHHHHHhcCC-CCCCcEEEEEcCCCC
Q 010200 59 AVVGGGMVGMALACSLASMP-LTKHLSVAIIDSNPA 93 (515)
Q Consensus 59 vIVGgG~aGl~~A~~L~~~~-~~~G~~V~v~E~~~~ 93 (515)
+||||||+|++++..|.+.. .....+|+|||+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 59999999999999998862 124689999999554
No 164
>PRK06116 glutathione reductase; Validated
Probab=98.69 E-value=1.5e-07 Score=98.22 Aligned_cols=34 Identities=38% Similarity=0.595 Sum_probs=32.0
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN 91 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~ 91 (515)
.+|||+||||||+|+++|+.|++. |++|+|+|+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~----G~~V~liE~~ 36 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMY----GAKVALIEAK 36 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC----CCeEEEEecc
Confidence 469999999999999999999996 9999999986
No 165
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.68 E-value=1.5e-07 Score=93.92 Aligned_cols=72 Identities=18% Similarity=0.202 Sum_probs=54.8
Q ss_pred EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCC---C--cEEEeeEE
Q 010200 166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD---G--TSLYAKLV 240 (515)
Q Consensus 166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---g--~~~~ad~v 240 (515)
..|+-..|.+.|.+.+.+..+++++++++|++|++ ..+..|.|...| | .++.+++|
T Consensus 176 TDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r-------------------~~dg~W~v~~~~~~~~~~~~v~a~FV 236 (488)
T PF06039_consen 176 TDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKR-------------------NGDGRWEVKVKDLKTGEKREVRAKFV 236 (488)
T ss_pred ccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEE-------------------CCCCCEEEEEEecCCCCeEEEECCEE
Confidence 45777899999999999885699999999999987 133447776532 2 37999999
Q ss_pred EEecCCCch-hhhhcCC
Q 010200 241 VGADGGKSR-VRELAGF 256 (515)
Q Consensus 241 V~AdG~~S~-vr~~l~~ 256 (515)
+...|+.|- +-+.+|+
T Consensus 237 fvGAGG~aL~LLqksgi 253 (488)
T PF06039_consen 237 FVGAGGGALPLLQKSGI 253 (488)
T ss_pred EECCchHhHHHHHHcCC
Confidence 999998874 4444554
No 166
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.68 E-value=4.5e-07 Score=97.26 Aligned_cols=39 Identities=31% Similarity=0.543 Sum_probs=35.2
Q ss_pred CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
.+..+||+|||+|++|+++|+.+++. |.+|+||||.+..
T Consensus 9 ~~~~~dvvvvG~G~aG~~aa~~~~~~----g~~v~~iek~~~~ 47 (581)
T PRK06134 9 PDLECDVLVIGSGAAGLSAAVTAAWH----GLKVIVVEKDPVF 47 (581)
T ss_pred CCCccCEEEECcCHHHHHHHHHHHHC----CCeEEEEecCCCC
Confidence 44579999999999999999999996 9999999998765
No 167
>PRK06370 mercuric reductase; Validated
Probab=98.68 E-value=7.4e-08 Score=100.78 Aligned_cols=37 Identities=32% Similarity=0.565 Sum_probs=33.9
Q ss_pred CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
++.+|||+||||||+|+++|+.|++. |++|+|+|+..
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~----G~~v~lie~~~ 38 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGL----GMKVALIERGL 38 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhC----CCeEEEEecCc
Confidence 45679999999999999999999996 99999999864
No 168
>PRK14694 putative mercuric reductase; Provisional
Probab=98.67 E-value=2e-07 Score=97.63 Aligned_cols=37 Identities=27% Similarity=0.415 Sum_probs=33.7
Q ss_pred CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
...+|||+||||||+|+++|+.|+++ |++|+|+|+..
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~----g~~v~lie~~~ 39 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATER----GARVTLIERGT 39 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhC----CCcEEEEEccc
Confidence 34679999999999999999999997 99999999864
No 169
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.66 E-value=8.9e-08 Score=102.62 Aligned_cols=39 Identities=28% Similarity=0.572 Sum_probs=35.3
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~ 95 (515)
+.++||||||+|++||++|+.+++. |.+|+|+||....+
T Consensus 7 ~~~~DVvVVG~G~aGl~AA~~aa~~----G~~v~llEk~~~~g 45 (574)
T PRK12842 7 ELTCDVLVIGSGAGGLSAAITARKL----GLDVVVLEKEPVFG 45 (574)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHc----CCeEEEEecCCCCC
Confidence 3478999999999999999999996 99999999998764
No 170
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.66 E-value=1.8e-07 Score=97.21 Aligned_cols=36 Identities=33% Similarity=0.562 Sum_probs=33.1
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
++|||+||||||+|+++|+.|+++ |++|+|+|+.+.
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~----g~~V~lie~~~~ 37 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKA----GWRVALIEQSNA 37 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHC----CCeEEEEcCCCC
Confidence 469999999999999999999996 999999999763
No 171
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.65 E-value=3.3e-07 Score=97.35 Aligned_cols=39 Identities=38% Similarity=0.542 Sum_probs=33.9
Q ss_pred CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (515)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~ 95 (515)
.+..+||+|||+|.|||++|+.+++ |.+|+|+||.+..+
T Consensus 6 ~~~e~DVlVVG~G~AGl~AAi~A~~-----G~~V~lieK~~~~g 44 (553)
T PRK07395 6 LPSQFDVLVVGSGAAGLYAALCLPS-----HLRVGLITKDTLKT 44 (553)
T ss_pred ccccCCEEEECccHHHHHHHHHhhc-----CCCEEEEEccCCCC
Confidence 3457899999999999999999964 89999999987653
No 172
>PRK09897 hypothetical protein; Provisional
Probab=98.65 E-value=1.2e-07 Score=99.46 Aligned_cols=38 Identities=29% Similarity=0.439 Sum_probs=32.5
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~ 95 (515)
.+|+||||||+|+++|..|.+.. ..++|+|||+...++
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~--~~l~V~lfEp~~~~G 39 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQ--TPLSISIFEQADEAG 39 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcC--CCCcEEEEecCCCCC
Confidence 47999999999999999998752 357999999988764
No 173
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.65 E-value=5.5e-07 Score=95.82 Aligned_cols=40 Identities=38% Similarity=0.558 Sum_probs=35.4
Q ss_pred CCCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200 51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (515)
Q Consensus 51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~ 95 (515)
..+.++||||||+| +|+++|+.+++. |.+|+|+||.+..+
T Consensus 12 ~~d~e~DvvvvG~G-~G~~aA~~a~~~----G~~v~v~Ek~~~~G 51 (564)
T PRK12845 12 VRDTTVDLLVVGSG-TGMAAALAAHEL----GLSVLIVEKSSYVG 51 (564)
T ss_pred CCCceeCEEEECCc-HHHHHHHHHHHC----CCcEEEEecCCCCc
Confidence 44568999999999 899999999996 99999999988764
No 174
>PRK10262 thioredoxin reductase; Provisional
Probab=98.64 E-value=2.9e-07 Score=91.52 Aligned_cols=114 Identities=17% Similarity=0.246 Sum_probs=73.4
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhh
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ 132 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~ 132 (515)
.+.+||+|||||||||++|+.|++. |++|+++|+.. .+ +....
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~----g~~~~~ie~~~-~g--------------g~~~~------------------ 46 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARA----NLQPVLITGME-KG--------------GQLTT------------------ 46 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHC----CCCeEEEEeec-CC--------------Cceec------------------
Confidence 3578999999999999999999996 89999999653 31 10000
Q ss_pred hhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCC
Q 010200 133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST 212 (515)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~ 212 (515)
... +++..+ .. ..+....+.+.+.+.+...+ .++..+ +|+.++.
T Consensus 47 -----~~~--~~~~~~-------------~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~-~v~~v~~------------ 90 (321)
T PRK10262 47 -----TTE--VENWPG-------------DP--NDLTGPLLMERMHEHATKFE-TEIIFD-HINKVDL------------ 90 (321)
T ss_pred -----Cce--ECCCCC-------------CC--CCCCHHHHHHHHHHHHHHCC-CEEEee-EEEEEEe------------
Confidence 000 000000 00 01234456677777777776 677765 6777755
Q ss_pred CCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCc
Q 010200 213 PSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKS 248 (515)
Q Consensus 213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S 248 (515)
....+++..+++ .+.+|.||.|+|.+.
T Consensus 91 --------~~~~~~v~~~~~-~~~~d~vilAtG~~~ 117 (321)
T PRK10262 91 --------QNRPFRLTGDSG-EYTCDALIIATGASA 117 (321)
T ss_pred --------cCCeEEEEecCC-EEEECEEEECCCCCC
Confidence 334556654444 689999999999875
No 175
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.64 E-value=2.8e-07 Score=98.82 Aligned_cols=38 Identities=26% Similarity=0.400 Sum_probs=34.1
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~ 95 (515)
.+.||+|||||+|||++|+.+++. |.+|+|+||.+..+
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~----G~~V~lieK~~~~~ 39 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEA----GVHVDLFSLVPVKR 39 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHc----CCcEEEEEccCCCC
Confidence 356999999999999999999996 99999999988653
No 176
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.63 E-value=1.7e-07 Score=99.51 Aligned_cols=38 Identities=37% Similarity=0.641 Sum_probs=33.4
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~ 95 (515)
+..+||+|||+|+|||++|+.+++ +.+|+|+||....+
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~-----~~~VilveK~~~~~ 43 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAE-----HRRVAVLSKGPLSE 43 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHH-----CCCEEEEeccCCCC
Confidence 456899999999999999999988 47999999988653
No 177
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.62 E-value=8.5e-08 Score=100.27 Aligned_cols=37 Identities=32% Similarity=0.572 Sum_probs=33.2
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
++|||+||||||+|+++|+.|++. |++|+|+|+...+
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~----G~~V~liE~~~~~ 38 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQL----GLKVACVEGRSTL 38 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhC----CCeEEEEecCCce
Confidence 359999999999999999999996 9999999986544
No 178
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.62 E-value=3e-07 Score=99.57 Aligned_cols=38 Identities=26% Similarity=0.381 Sum_probs=34.5
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~ 95 (515)
..+||+|||||.|||++|+.+++. |.+|+|+||.+..+
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~----G~~VivleK~~~~~ 41 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQR----GLDTIVLSLVPAKR 41 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHc----CCCEEEEeCCCCCC
Confidence 468999999999999999999995 99999999987654
No 179
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.61 E-value=3.3e-07 Score=95.19 Aligned_cols=36 Identities=39% Similarity=0.531 Sum_probs=33.3
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
++|||+||||||||+++|..|++. |++|+|+||...
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~----g~~V~liE~~~~ 37 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASA----GKKVALVEESKA 37 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhC----CCEEEEEecCCc
Confidence 469999999999999999999996 999999999864
No 180
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.60 E-value=7.1e-07 Score=93.44 Aligned_cols=60 Identities=13% Similarity=0.186 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCC--cEEEeeEEEEecCCCc
Q 010200 171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG--TSLYAKLVVGADGGKS 248 (515)
Q Consensus 171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g--~~~~ad~vV~AdG~~S 248 (515)
..+...+.+.+++.| ++++.+++|++++. .++.+.+.+.+| .++.+|.||.|.|...
T Consensus 211 ~~~~~~~~~~l~~~g-i~i~~~~~v~~i~~--------------------~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p 269 (461)
T TIGR01350 211 AEVSKVVAKALKKKG-VKILTNTKVTAVEK--------------------NDDQVVYENKGGETETLTGEKVLVAVGRKP 269 (461)
T ss_pred HHHHHHHHHHHHHcC-CEEEeCCEEEEEEE--------------------eCCEEEEEEeCCcEEEEEeCEEEEecCCcc
Confidence 456677778888887 99999999999975 234566666666 4799999999999877
Q ss_pred hhh
Q 010200 249 RVR 251 (515)
Q Consensus 249 ~vr 251 (515)
...
T Consensus 270 ~~~ 272 (461)
T TIGR01350 270 NTE 272 (461)
T ss_pred cCC
Confidence 653
No 181
>PLN02976 amine oxidase
Probab=98.59 E-value=1.7e-05 Score=89.59 Aligned_cols=68 Identities=15% Similarity=0.158 Sum_probs=46.3
Q ss_pred cCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCc-chHHHHHHHHHHhhHHHHHHHHHHH
Q 010200 393 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADI-GEASLLKKYEAERKPANIVMMAVLD 463 (515)
Q Consensus 393 ~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~-~~~~al~~Y~~~r~~~~~~~~~~s~ 463 (515)
.+++++.|++.+...|-+ +.-|++.+...|+.|...+..+.++ ....+++.|++........+..+.+
T Consensus 1150 ggRLFFAGEATS~~~pGT---VHGAIeSG~RAA~eIL~~L~~G~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 1218 (1713)
T PLN02976 1150 ENCLFFAGEATCKEHPDT---VGGAMMSGLREAVRIIDILNTGNDYTAEVEALETAQRHSESERDEVRDITK 1218 (1713)
T ss_pred CCcEEEEehhhhCCCcch---HHHHHHHHHHHHHHHHHHHHccCccccHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 467999999988766644 4557889998888888888766543 3467788877654444333333333
No 182
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.59 E-value=4e-07 Score=97.51 Aligned_cols=40 Identities=33% Similarity=0.464 Sum_probs=35.9
Q ss_pred CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (515)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~ 95 (515)
...++||||||+|++||++|+.+++. |.+|+|+||.+..+
T Consensus 8 ~~~~~DVvVVG~G~AGl~AA~~aae~----G~~VivlEk~~~~g 47 (584)
T PRK12835 8 FDREVDVLVVGSGGGGMTAALTAAAR----GLDTLVVEKSAHFG 47 (584)
T ss_pred ccCcCCEEEECccHHHHHHHHHHHHC----CCcEEEEEcCCCCC
Confidence 44578999999999999999999996 99999999998764
No 183
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.59 E-value=1e-06 Score=93.94 Aligned_cols=39 Identities=38% Similarity=0.575 Sum_probs=35.0
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~ 95 (515)
+.++||+|||+|++|+++|+.|++. |.+|+||||....+
T Consensus 4 d~~~DvvIiG~G~aGl~aA~~~a~~----G~~v~liEk~~~~g 42 (557)
T PRK12844 4 DETYDVVVVGSGGGGMCAALAAADS----GLEPLIVEKQDKVG 42 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHC----CCcEEEEecCCCCC
Confidence 3478999999999999999999996 99999999987653
No 184
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.59 E-value=3.4e-07 Score=96.75 Aligned_cols=39 Identities=38% Similarity=0.531 Sum_probs=34.6
Q ss_pred CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (515)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~ 95 (515)
.+.++||||||+| +||++|+.+++. |.+|+|+||.+..+
T Consensus 4 ~d~~~DVvVVG~G-aGl~aA~~aa~~----G~~V~vlEk~~~~G 42 (513)
T PRK12837 4 WDEEVDVLVAGSG-GGVAGAYTAARE----GLSVALVEATDKFG 42 (513)
T ss_pred CCCccCEEEECch-HHHHHHHHHHHC----CCcEEEEecCCCCC
Confidence 3457899999999 999999999996 99999999988653
No 185
>PLN02507 glutathione reductase
Probab=98.58 E-value=1.8e-07 Score=98.47 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=31.8
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcC
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDS 90 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~ 90 (515)
..+|||+||||||+|+.+|..|+++ |.+|+|+|+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~----G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANF----GAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHC----CCeEEEEec
Confidence 4569999999999999999999997 999999997
No 186
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.58 E-value=3.6e-07 Score=95.08 Aligned_cols=35 Identities=29% Similarity=0.470 Sum_probs=32.3
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
++|||+||||||+|+++|+.|++. |++|+|+||..
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~----G~~V~liE~~~ 35 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEH----GAKALLVEAKK 35 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC----CCcEEEecccc
Confidence 369999999999999999999996 99999999964
No 187
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.57 E-value=6e-07 Score=93.09 Aligned_cols=65 Identities=17% Similarity=0.177 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcC-CCcEEEeeEEEEecCCCch
Q 010200 171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS-DGTSLYAKLVVGADGGKSR 249 (515)
Q Consensus 171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~g~~~~ad~vV~AdG~~S~ 249 (515)
..+.+.|.+.+++.| ++|+++++|+++.. +++ .+..+.+... ++.++.++.||.|+|..+.
T Consensus 123 ~~l~~~L~~~a~~~G-v~i~~~~~v~~l~~---------~~~--------~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~ 184 (432)
T TIGR02485 123 KALTNALYSSAERLG-VEIRYGIAVDRIPP---------EAF--------DGAHDGPLTTVGTHRITTQALVLAAGGLGA 184 (432)
T ss_pred HHHHHHHHHHHHHcC-CEEEeCCEEEEEEe---------cCC--------CCeEEEEEEcCCcEEEEcCEEEEcCCCccc
Confidence 568899999999988 99999999999976 100 1122334333 3347999999999999876
Q ss_pred hhhh
Q 010200 250 VREL 253 (515)
Q Consensus 250 vr~~ 253 (515)
-+..
T Consensus 185 n~~~ 188 (432)
T TIGR02485 185 NRDW 188 (432)
T ss_pred CHHH
Confidence 5443
No 188
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.57 E-value=3.2e-07 Score=105.56 Aligned_cols=39 Identities=33% Similarity=0.475 Sum_probs=35.2
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~ 95 (515)
+.++||||||||.||+++|+.+++. |.+|+|+||.+..+
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~----Ga~VivlEK~~~~G 445 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASC----GAQVILLEKEAKLG 445 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHC----CCcEEEEEccCCCC
Confidence 4568999999999999999999996 99999999988653
No 189
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.57 E-value=7.6e-07 Score=94.03 Aligned_cols=61 Identities=18% Similarity=0.212 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCC--eeEEEcCCCc-EEEeeEEEEecCCC
Q 010200 171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH--LAKLDLSDGT-SLYAKLVVGADGGK 247 (515)
Q Consensus 171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~g~-~~~ad~vV~AdG~~ 247 (515)
..+...|.+.+.+.++++++.++.++++.. +++. ++.+...++. .+.++.||.|+|..
T Consensus 136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~-------------------~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~ 196 (513)
T PRK07512 136 AAIMRALIAAVRATPSITVLEGAEARRLLV-------------------DDGAVAGVLAATAGGPVVLPARAVVLATGGI 196 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcChhheee-------------------cCCEEEEEEEEeCCeEEEEECCEEEEcCCCC
Confidence 568888998888764499999999999865 0112 2233222232 68999999999998
Q ss_pred chh
Q 010200 248 SRV 250 (515)
Q Consensus 248 S~v 250 (515)
+.+
T Consensus 197 ~~~ 199 (513)
T PRK07512 197 GGL 199 (513)
T ss_pred cCC
Confidence 754
No 190
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.57 E-value=1.3e-06 Score=89.76 Aligned_cols=44 Identities=32% Similarity=0.413 Sum_probs=39.1
Q ss_pred CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCC
Q 010200 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNF 99 (515)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~ 99 (515)
|+.++||||||+|++|+.+|..|++. |.+|+++|++...+...+
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~----GkkVLhlD~n~~yGG~~a 44 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVN----GKKVLHMDRNPYYGGESA 44 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhC----CCEEEEecCCCCcCcccc
Confidence 35679999999999999999999996 999999999998875543
No 191
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.57 E-value=5.3e-07 Score=91.26 Aligned_cols=123 Identities=15% Similarity=0.147 Sum_probs=71.0
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (515)
.||+|||||++|+.+|+.|++. |++|+|||+++........ .. .........+..+..+++..|++..-..
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~----G~~V~LiE~rp~~~~p~~~-~~-~~~elvcs~Slgg~~l~~a~Gil~~ei~--- 71 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQA----GVPVILYEMRPEKLTPAHH-TE-DLAELVCSNSLGAKALDRAAGLLKTEMR--- 71 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhC----CCcEEEEeccccccCchhh-hh-hhhhhcccccccchhHHhccCcHHHHHh---
Confidence 3799999999999999999996 9999999998764321100 00 0000111123334455666666543222
Q ss_pred cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEE
Q 010200 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSM 198 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i 198 (515)
....+.+..... ...+ ....+.++|..+.+.+.+.+++.++++++ ...|+++
T Consensus 72 -~lg~l~~~~ad~---~~Ip------agg~~~vDR~lF~~~L~~qLe~~pnItvi-q~eV~dL 123 (433)
T TIGR00137 72 -QLSSLIITAADR---HAVP------AGGALAVDRGIFSRSLTEQVASHPNVTLI-REEVTEI 123 (433)
T ss_pred -hcCeeeeehhhh---hCCC------CCceEEehHHHHHHHHHHHHHhCCCcEEE-eeeeEEE
Confidence 111122111101 0000 11235789999999999999887766665 4466655
No 192
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.57 E-value=6.2e-07 Score=91.06 Aligned_cols=73 Identities=18% Similarity=0.320 Sum_probs=49.7
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCC-CCCCC---CCcEEEeC-HhHHHHHHHcCCchhhh
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIK-KEDPP---DPRVSTVT-PATISFFKEIGAWQYVQ 131 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~-~~~~~---~~~~~~l~-~~~~~~l~~lgl~~~~~ 131 (515)
.|+|||||++||++|+.|++.+ +...|+|||+++..+..-... .++.. ........ +..++.++++|+.+.+.
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~--p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~ 79 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAG--PDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGLEDKLL 79 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhC--CCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHhCcHHhhc
Confidence 6999999999999999999972 128999999998775322100 00000 01112222 66778889999988877
No 193
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.56 E-value=6.4e-07 Score=93.96 Aligned_cols=33 Identities=39% Similarity=0.574 Sum_probs=31.4
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDS 90 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~ 90 (515)
..|||+||||||+|+++|+.|++. |.+|+|+|+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~----g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQL----GLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhC----CCeEEEEec
Confidence 469999999999999999999996 999999998
No 194
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.55 E-value=5.8e-06 Score=85.13 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=55.1
Q ss_pred EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecC
Q 010200 166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADG 245 (515)
Q Consensus 166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG 245 (515)
-.++...+.++|...+.++| +.|..++.|++|.. ..+..+.|++.-|. +++..||.|+|
T Consensus 182 G~~DP~~lC~ala~~A~~~G-A~viE~cpV~~i~~-------------------~~~~~~gVeT~~G~-iet~~~VNaaG 240 (856)
T KOG2844|consen 182 GVMDPAGLCQALARAASALG-ALVIENCPVTGLHV-------------------ETDKFGGVETPHGS-IETECVVNAAG 240 (856)
T ss_pred cccCHHHHHHHHHHHHHhcC-cEEEecCCcceEEe-------------------ecCCccceeccCcc-eecceEEechh
Confidence 35788999999999999999 99999999999976 12234477777776 99999999999
Q ss_pred CCchhhhhc
Q 010200 246 GKSRVRELA 254 (515)
Q Consensus 246 ~~S~vr~~l 254 (515)
.|..--..|
T Consensus 241 vWAr~Vg~m 249 (856)
T KOG2844|consen 241 VWAREVGAM 249 (856)
T ss_pred HHHHHhhhh
Confidence 998543333
No 195
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.55 E-value=1.6e-06 Score=90.77 Aligned_cols=35 Identities=31% Similarity=0.504 Sum_probs=32.3
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
.+|||+||||||+|+++|+.|++. |.+|+|+|++.
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~----G~~V~lie~~~ 37 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQL----GLKTAVVEKKY 37 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC----CCeEEEEecCC
Confidence 359999999999999999999996 99999999863
No 196
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.55 E-value=3.9e-07 Score=90.61 Aligned_cols=43 Identities=26% Similarity=0.497 Sum_probs=39.5
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCC
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNF 99 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~ 99 (515)
....||||||+|.+||++|+.|.|+ |++|+|+|.+...+.+.+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~ka----G~~v~ilEar~r~GGR~~ 47 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKA----GYQVQILEARDRVGGRSL 47 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhc----CcEEEEEeccCCcCceeE
Confidence 4678999999999999999999997 999999999999987665
No 197
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.54 E-value=9e-08 Score=88.20 Aligned_cols=33 Identities=39% Similarity=0.663 Sum_probs=30.5
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
||+||||||||+++|..|++. |++|+|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~----~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP----GAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT----TSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcC----CCeEEEEecccc
Confidence 799999999999999999985 999999988774
No 198
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.54 E-value=8.2e-07 Score=95.37 Aligned_cols=33 Identities=33% Similarity=0.395 Sum_probs=30.5
Q ss_pred EEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 58 VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 58 VvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
|+|||+|+|||++|+.+++. |.+|+|+||.+.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~----G~~VilleK~~~~ 33 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAEL----GYHVKLFSYVDAP 33 (603)
T ss_pred CEEECccHHHHHHHHHHHHc----CCCEEEEEecCCC
Confidence 79999999999999999996 9999999998844
No 199
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.53 E-value=5.2e-07 Score=69.71 Aligned_cols=34 Identities=38% Similarity=0.694 Sum_probs=31.8
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~----g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL----GKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT----TSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh----CcEEEEEeccchh
Confidence 489999999999999999996 8999999999966
No 200
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.52 E-value=7e-06 Score=81.44 Aligned_cols=59 Identities=14% Similarity=0.264 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200 171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR 249 (515)
Q Consensus 171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~ 249 (515)
..+..-+.+.++++| ++|+++++|.+++. .++....+..++|.++.+|.||.|-|..+.
T Consensus 173 ~~vvkni~~~l~~~G-~ei~f~t~VeDi~~-------------------~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~ 231 (486)
T COG2509 173 PKVVKNIREYLESLG-GEIRFNTEVEDIEI-------------------EDNEVLGVKLTKGEEIEADYVVLAPGRSGR 231 (486)
T ss_pred HHHHHHHHHHHHhcC-cEEEeeeEEEEEEe-------------------cCCceEEEEccCCcEEecCEEEEccCcchH
Confidence 567788999999998 99999999999987 122356788889999999999999998764
No 201
>PRK13748 putative mercuric reductase; Provisional
Probab=98.51 E-value=8.3e-07 Score=95.33 Aligned_cols=34 Identities=29% Similarity=0.378 Sum_probs=32.2
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN 91 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~ 91 (515)
.+|||+||||||+|+++|+.|+++ |.+|+|+|++
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~----G~~v~lie~~ 130 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQ----GARVTLIERG 130 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhC----CCeEEEEecC
Confidence 469999999999999999999997 9999999987
No 202
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.50 E-value=3.7e-07 Score=97.83 Aligned_cols=41 Identities=32% Similarity=0.504 Sum_probs=36.1
Q ss_pred CCCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200 51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (515)
Q Consensus 51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~ 95 (515)
..+.++||+|||+|++|+++|+.+++. |++|+|+||....+
T Consensus 12 ~~~~~~dvvvvG~G~aG~~aa~~~~~~----g~~v~l~ek~~~~g 52 (578)
T PRK12843 12 RWDAEFDVIVIGAGAAGMSAALFAAIA----GLKVLLVERTEYVG 52 (578)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHHHC----CCcEEEEecCCCCC
Confidence 345578999999999999999999996 99999999987654
No 203
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.49 E-value=4.5e-07 Score=84.10 Aligned_cols=173 Identities=13% Similarity=0.144 Sum_probs=91.1
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCC-CCCC-cEEEEEcCCCCCCCCCCCCCCCCCCCc--E---EEeCHhHHHHHHHcCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMP-LTKH-LSVAIIDSNPALGKSNFIKKEDPPDPR--V---STVTPATISFFKEIGA 126 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~-~~~G-~~V~v~E~~~~~~~~~~~~~~~~~~~~--~---~~l~~~~~~~l~~lgl 126 (515)
...+|+|||||+.|.++|+.|++.+ +.+| +.|+|||+....+..+-.. ++..... . ..+.+-+..+-+.|
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGka-sgfLa~wc~~s~~~~La~lsfkLh~~L-- 85 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKA-SGFLAKWCQPSIIQPLATLSFKLHEEL-- 85 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccccccc-chhhHhhhCCcccchhhHHHHHHHHHH--
Confidence 3478999999999999999999972 1111 7899999988763221000 0000000 0 11111122222222
Q ss_pred chhhh---hhhccccceEEEEeC---CCcccee-----ee------cccCCCCcceEEechHHHHHHHHHHHhcCCCceE
Q 010200 127 WQYVQ---QHRHAYFDKMQVWDY---TGLGYTK-----YN------ARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKT 189 (515)
Q Consensus 127 ~~~~~---~~~~~~~~~~~~~~~---~~~~~~~-----~~------~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i 189 (515)
.++++ ...+.....+.+.-. ....... +. ....+.....-+++...|.+.+++.+++.|+|++
T Consensus 86 sdeydGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~l 165 (380)
T KOG2852|consen 86 SDEYDGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVKL 165 (380)
T ss_pred HHhhcCcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCeEE
Confidence 12211 112212222221111 1100000 00 0011122333578899999999999999998999
Q ss_pred EcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcC---C-CcEEEeeEEEEecCCCch
Q 010200 190 IYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS---D-GTSLYAKLVVGADGGKSR 249 (515)
Q Consensus 190 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~-g~~~~ad~vV~AdG~~S~ 249 (515)
.+| .|.++..+ +.....+..+ + ....+.+.+|.+.|.|+.
T Consensus 166 v~G-kv~ev~dE-------------------k~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTs 209 (380)
T KOG2852|consen 166 VFG-KVKEVSDE-------------------KHRINSVPKAEAEDTIIKADVHKIVVSAGPWTS 209 (380)
T ss_pred EEe-eeEEeecc-------------------cccccccchhhhcCceEEeeeeEEEEecCCCch
Confidence 998 78888531 1111111111 2 235789999999999986
No 204
>PTZ00058 glutathione reductase; Provisional
Probab=98.49 E-value=2e-06 Score=91.26 Aligned_cols=38 Identities=34% Similarity=0.476 Sum_probs=33.9
Q ss_pred CCCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
+...+|||+||||||+|.++|+.+++. |.+|+|+|++.
T Consensus 44 ~~~~~yDvvVIG~G~aG~~aA~~aa~~----G~~ValIEk~~ 81 (561)
T PTZ00058 44 KPRMVYDLIVIGGGSGGMAAARRAARN----KAKVALVEKDY 81 (561)
T ss_pred CCCccccEEEECcCHHHHHHHHHHHHc----CCeEEEEeccc
Confidence 334679999999999999999999997 99999999863
No 205
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.47 E-value=2.5e-06 Score=85.60 Aligned_cols=162 Identities=18% Similarity=0.202 Sum_probs=91.0
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhH-H-----HHHHH-cCC---
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPAT-I-----SFFKE-IGA--- 126 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-----~~l~~-lgl--- 126 (515)
||+|||+|+|||++|+.|.+ .++|+|+-|.+.....+.. ...+-...+.+.- . +.|.. -|+
T Consensus 9 dV~IiGsG~AGL~~AL~L~~-----~~~V~vltk~~~~~~sS~~----AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~ 79 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAP-----SFRVTVLTKGPLGESSSYW----AQGGIAAALSEDDSPELHVADTLAAGAGLCDE 79 (518)
T ss_pred cEEEECCcHHHHHHHHhCCC-----CCcEEEEeCCCCCCccchh----hcCceEeeeCCCCCHHHHHHHHHHhcCCCCcH
Confidence 89999999999999999999 4899999998866322110 1111122222211 1 11110 011
Q ss_pred -------------chhhhhhhccccceEEEEeCCCccceeeecccCCCCcceEE---echHHHHHHHHHHHhcCCCceEE
Q 010200 127 -------------WQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCV---VENKVLHSSLLSCMQNTEFQKTI 190 (515)
Q Consensus 127 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~r~~l~~~L~~~~~~~g~v~i~ 190 (515)
.+.+...+. ++ +.+....+.+..+..+....-.. -.-..+.+.|.+++++.++++|+
T Consensus 80 ~aV~~iv~~~~~ai~~Li~~Gv-~F------Dr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~ 152 (518)
T COG0029 80 EAVEFIVSEAPEAIEWLIDLGV-PF------DRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVL 152 (518)
T ss_pred HHHHHHHHhHHHHHHHHHHcCC-CC------cCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEE
Confidence 112222222 11 11111112222111111111011 22367889999999998889999
Q ss_pred cCCeeEEEEeCCCCCCcccCCCCCcccccccCC---eeEEEcCCC--cEEEeeEEEEecCCCchhhhh
Q 010200 191 YPSRLTSMALLPSSSSISVDSTPSATTLFTKGH---LAKLDLSDG--TSLYAKLVVGADGGKSRVREL 253 (515)
Q Consensus 191 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~g--~~~~ad~vV~AdG~~S~vr~~ 253 (515)
.++.+.++..+ ++. ++.+...++ .++.++.||.|+|.-+.+=..
T Consensus 153 e~~~a~~li~~-------------------~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~~ 201 (518)
T COG0029 153 EGAEALDLIIE-------------------DGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGLYAY 201 (518)
T ss_pred ecchhhhhhhc-------------------CCceEeEEEEecCCCeEEEEecCeEEEecCCCcccccc
Confidence 99999998761 111 333333333 478999999999998877444
No 206
>PRK14727 putative mercuric reductase; Provisional
Probab=98.46 E-value=1.4e-06 Score=91.55 Aligned_cols=39 Identities=28% Similarity=0.376 Sum_probs=34.8
Q ss_pred CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
.+.++||+||||||+|+++|+.|++. |.+|+|+|+...+
T Consensus 13 ~~~~~dvvvIG~G~aG~~~a~~~~~~----g~~v~~ie~~~~~ 51 (479)
T PRK14727 13 SKLQLHVAIIGSGSAAFAAAIKAAEH----GARVTIIEGADVI 51 (479)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhC----CCeEEEEEccCcc
Confidence 34579999999999999999999997 9999999998655
No 207
>PLN02546 glutathione reductase
Probab=98.46 E-value=4.9e-07 Score=95.79 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=31.4
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcC
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDS 90 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~ 90 (515)
..+|||+||||||+|+.+|..|++. |.+|+|+|+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~----G~~V~liE~ 110 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNF----GASAAVCEL 110 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC----CCeEEEEec
Confidence 3469999999999999999999996 999999996
No 208
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.45 E-value=7.7e-05 Score=81.48 Aligned_cols=42 Identities=29% Similarity=0.465 Sum_probs=37.1
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCC
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSN 98 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~ 98 (515)
....+|+|||||++||++|+.|++. |++|+|+|++..++.+.
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~----g~~v~v~E~~~r~GGr~ 277 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSM----GFKVVVLEGRARPGGRV 277 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHC----CCcEEEEeccccCCCcc
Confidence 3467999999999999999999995 99999999999886553
No 209
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.45 E-value=2.4e-06 Score=89.50 Aligned_cols=33 Identities=33% Similarity=0.647 Sum_probs=31.4
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
|||+||||||+|+++|+.|++. |++|+|+||..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~----g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAEL----GASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHC----CCeEEEEeCCc
Confidence 7999999999999999999996 99999999976
No 210
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.44 E-value=1.7e-06 Score=90.51 Aligned_cols=34 Identities=35% Similarity=0.579 Sum_probs=31.7
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN 91 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~ 91 (515)
..|||+||||||+|+++|..|++. |.+|+|+|++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~----g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKL----GKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHC----CCeEEEEeCC
Confidence 469999999999999999999996 9999999993
No 211
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.43 E-value=9.9e-07 Score=91.92 Aligned_cols=36 Identities=19% Similarity=0.481 Sum_probs=31.6
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
+|+|||||++|+++|..|++.+ ++.+|+|||+.+..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~--~~~~Vtli~~~~~~ 37 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLN--KELEITVYEKTDIV 37 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHC--CCCcEEEEECCCcc
Confidence 6999999999999999999863 35799999998855
No 212
>PRK12831 putative oxidoreductase; Provisional
Probab=98.42 E-value=4.8e-07 Score=94.31 Aligned_cols=38 Identities=32% Similarity=0.420 Sum_probs=34.5
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
....||+|||||||||++|+.|++. |++|+|||+...+
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~----G~~V~v~e~~~~~ 175 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKM----GYDVTIFEALHEP 175 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhC----CCeEEEEecCCCC
Confidence 4568999999999999999999996 9999999988765
No 213
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.40 E-value=1.7e-06 Score=92.53 Aligned_cols=34 Identities=26% Similarity=0.456 Sum_probs=31.0
Q ss_pred cEEEECCCHHHHHHHHHHh----cCCCCCCcEEEEEcCCCCC
Q 010200 57 DVAVVGGGMVGMALACSLA----SMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~----~~~~~~G~~V~v~E~~~~~ 94 (515)
||+|||||.|||++|+.++ +. |.+|+|+||....
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~----G~~VilieK~~~~ 38 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKK----GLKIVLVEKANLE 38 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhC----CCeEEEEEccCCC
Confidence 8999999999999999998 54 8999999998864
No 214
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.39 E-value=3.6e-07 Score=67.94 Aligned_cols=32 Identities=34% Similarity=0.627 Sum_probs=29.3
Q ss_pred EECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200 60 VVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (515)
Q Consensus 60 IVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~ 95 (515)
|||||++||++|+.|++. |++|+|||+.+.++
T Consensus 1 IiGaG~sGl~aA~~L~~~----g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA----GYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHT----TSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHC----CCcEEEEecCcccC
Confidence 899999999999999996 99999999999884
No 215
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.39 E-value=5.6e-06 Score=79.07 Aligned_cols=70 Identities=23% Similarity=0.327 Sum_probs=48.0
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEE-------E----eCHhHHHHHH
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVS-------T----VTPATISFFK 122 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~-------~----l~~~~~~~l~ 122 (515)
...+|+|||+|++||++|+.|++. ++|++||.+...+....-.. ....+.+. . .-|+..++++
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-----hdVTLfEA~~rlGGha~Tv~-~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~ 80 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-----HDVTLFEADRRLGGHANTVA-GNTDGGGVFVDTGFIVYNERTYPNLTRLFK 80 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-----cceEEEeccccccCccceee-ccccCCceeecceeEEecCCCcchHHHHHH
Confidence 457899999999999999999994 89999999998864432100 01112221 1 1256677888
Q ss_pred HcCCchh
Q 010200 123 EIGAWQY 129 (515)
Q Consensus 123 ~lgl~~~ 129 (515)
.+|+...
T Consensus 81 ~iGv~t~ 87 (447)
T COG2907 81 TIGVDTK 87 (447)
T ss_pred HcCCCCc
Confidence 8887443
No 216
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.38 E-value=8.6e-07 Score=99.33 Aligned_cols=37 Identities=30% Similarity=0.348 Sum_probs=34.1
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
...+|+|||||||||++|+.|++. |++|+|||+.+.+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~----G~~VtVfE~~~~~ 341 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVE----GFPVTVFEAFHDL 341 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC----CCeEEEEeeCCCC
Confidence 467999999999999999999996 9999999998866
No 217
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.36 E-value=4e-06 Score=95.23 Aligned_cols=38 Identities=37% Similarity=0.551 Sum_probs=34.7
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~ 95 (515)
..+||+|||||||||++|+.|++. |++|+|+|+.+.++
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~----G~~V~liD~~~~~G 199 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARA----GARVILVDEQPEAG 199 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCCCC
Confidence 468999999999999999999996 99999999988764
No 218
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.36 E-value=1.5e-06 Score=81.63 Aligned_cols=186 Identities=18% Similarity=0.131 Sum_probs=105.8
Q ss_pred CCCccEEEECCCHHHHHHHHHHhc-CCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHH---------H-
Q 010200 53 DDQYDVAVVGGGMVGMALACSLAS-MPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISF---------F- 121 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~-~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------l- 121 (515)
...||+||||||++||+.|.+|.- + ++++|.|+|+.......... .+....-.|+-..|+++++ +
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrh---p~l~V~vleke~~la~hqSg-hNSgViHaGIYY~P~SLKAklCV~G~~LlY 121 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRH---PSLKVAVLEKEKSLAVHQSG-HNSGVIHAGIYYKPGSLKAKLCVEGRELLY 121 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcC---CCceEEeeehhhhhceeecc-cccceeeeeeeeCCcccchhhhhccHHHHH
Confidence 457999999999999999998864 4 48999999999887543210 0111122344444444432 1
Q ss_pred ---HHcC-------------------Cchhhhhhhc-cccceEEEEeCCCccceeeecccC--CCCcceEEechHHHHHH
Q 010200 122 ---KEIG-------------------AWQYVQQHRH-AYFDKMQVWDYTGLGYTKYNARDV--NKEILGCVVENKVLHSS 176 (515)
Q Consensus 122 ---~~lg-------------------l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~r~~l~~~ 176 (515)
++-+ ..+.+...+. ..+.++++..+.......-.-+.. -..+..-.++...+...
T Consensus 122 ~yc~e~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls 201 (453)
T KOG2665|consen 122 EYCDEKKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLS 201 (453)
T ss_pred HHhhhcCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHH
Confidence 1111 1122222211 123444444332221111000000 01222245778888888
Q ss_pred HHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhc-C
Q 010200 177 LLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELA-G 255 (515)
Q Consensus 177 L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l-~ 255 (515)
+.+..+..| ..+..+-++..+.. ..+. .-.-.++|.-..+++++++.||.|+|-.|..-..+ |
T Consensus 202 ~~edF~~~g-g~i~~n~~l~g~~~---------n~~~------~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~sg 265 (453)
T KOG2665|consen 202 FGEDFDFMG-GRIYTNFRLQGIAQ---------NKEA------TFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAALSG 265 (453)
T ss_pred HHHHHHHhc-ccccccceeccchh---------ccCC------CCCCceEEecCccceeEEeEEEEeccccHhHHHHHhC
Confidence 888898888 78999999999865 1110 02234555555577999999999999987643333 4
Q ss_pred Ccc
Q 010200 256 FKT 258 (515)
Q Consensus 256 ~~~ 258 (515)
...
T Consensus 266 c~~ 268 (453)
T KOG2665|consen 266 CEL 268 (453)
T ss_pred CCC
Confidence 433
No 219
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.33 E-value=5.6e-06 Score=83.60 Aligned_cols=59 Identities=17% Similarity=0.147 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeE-EEcCCC--cEEEeeEEEEecCC
Q 010200 170 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAK-LDLSDG--TSLYAKLVVGADGG 246 (515)
Q Consensus 170 r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~g--~~~~ad~vV~AdG~ 246 (515)
-.+|.+.|.+.+++.| ++++.+++|.++.. .++.++ +...++ .++.+|.||.|+|+
T Consensus 262 G~RL~~aL~~~~~~~G-g~il~g~~V~~i~~--------------------~~~~v~~V~t~~g~~~~l~AD~vVLAaGa 320 (419)
T TIGR03378 262 GIRLEEALKHRFEQLG-GVMLPGDRVLRAEF--------------------EGNRVTRIHTRNHRDIPLRADHFVLASGS 320 (419)
T ss_pred HHHHHHHHHHHHHHCC-CEEEECcEEEEEEe--------------------eCCeEEEEEecCCccceEECCEEEEccCC
Confidence 3567889999999998 89999999999876 334344 444555 37999999999999
Q ss_pred C-ch
Q 010200 247 K-SR 249 (515)
Q Consensus 247 ~-S~ 249 (515)
| |.
T Consensus 321 w~S~ 324 (419)
T TIGR03378 321 FFSN 324 (419)
T ss_pred CcCH
Confidence 9 76
No 220
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.31 E-value=1.2e-06 Score=92.29 Aligned_cols=33 Identities=42% Similarity=0.553 Sum_probs=31.1
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN 91 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~ 91 (515)
.|||+||||||+|+++|+.|+++ |.+|+|+|+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~----G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAH----GKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC----CCeEEEEecc
Confidence 58999999999999999999996 9999999974
No 221
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.31 E-value=4.2e-06 Score=87.54 Aligned_cols=32 Identities=25% Similarity=0.466 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
||+||||||+|+.+|..|++. |.+|+|+|+..
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~----g~~v~~~e~~~ 34 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQL----GADVTVIERDG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhC----CCeEEEEEccC
Confidence 799999999999999999996 99999999875
No 222
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.30 E-value=6.3e-06 Score=92.87 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=33.8
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
...+||+|||||.|||++|+.+++. |.+|+|+||...
T Consensus 11 ~~~~DVlVVG~G~AGl~AAl~Aa~~----G~~V~lleK~~~ 47 (897)
T PRK13800 11 RLDCDVLVIGGGTAGTMAALTAAEH----GANVLLLEKAHV 47 (897)
T ss_pred eeecCEEEECcCHHHHHHHHHHHHC----CCeEEEEecccc
Confidence 3468999999999999999999996 999999999885
No 223
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.29 E-value=3.5e-06 Score=87.50 Aligned_cols=36 Identities=19% Similarity=0.345 Sum_probs=32.1
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
+|+|||||++|+.+|..|++.+ ++.+|+|+|+.+..
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~--~~~~I~li~~~~~~ 38 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLD--KESDIIIFEKDRDM 38 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhC--CCCCEEEEECCCCc
Confidence 7999999999999999998853 47899999999865
No 224
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.29 E-value=2.7e-06 Score=87.14 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=31.7
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
+.+|+|||||+||+.+|..|++.+ ...+|+|+++.+..
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~--~~~~I~li~~e~~~ 40 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQG--FTGELHLFSDERHL 40 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhC--CCCCEEEeCCCCCC
Confidence 457999999999999999999963 23489999988754
No 225
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.29 E-value=6.7e-06 Score=85.91 Aligned_cols=33 Identities=30% Similarity=0.452 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
+|+||||||+|+++|..|++. |.+|+|+||+..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~----g~~V~lie~~~~ 34 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN----GKNVTLIDEADL 34 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC----CCcEEEEECCcc
Confidence 799999999999999999996 999999999753
No 226
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=98.28 E-value=2.1e-05 Score=73.72 Aligned_cols=44 Identities=20% Similarity=0.357 Sum_probs=33.3
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCC---CCCCcEEEEEcCCCCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMP---LTKHLSVAIIDSNPALGKS 97 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~---~~~G~~V~v~E~~~~~~~~ 97 (515)
+..+|+|||+|..||++|+.+.+.. ..+-.+|+|++-+..+.+.
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~ 48 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTT 48 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccccc
Confidence 4578999999999999998877731 1134789999887766433
No 227
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.24 E-value=5.4e-06 Score=91.97 Aligned_cols=37 Identities=30% Similarity=0.415 Sum_probs=33.9
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
...+|+||||||||+++|+.|++. |++|+|||+.+.+
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~----G~~VtV~Ek~~~~ 574 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARA----GHPVTVFEREENA 574 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHc----CCeEEEEeccccc
Confidence 457899999999999999999996 9999999998865
No 228
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.24 E-value=9e-06 Score=82.76 Aligned_cols=106 Identities=24% Similarity=0.341 Sum_probs=79.5
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (515)
.+|+|||||+.|+-+|..|++. |.+|+++|+.+.+. + ..
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~----g~~Vtlv~~~~~~l-------------------~-------------~~----- 180 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRA----GKAVTLVDNAASLL-------------------A-------------SL----- 180 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhc----CCeEEEEecCCccc-------------------c-------------hh-----
Confidence 5799999999999999999995 89999999877430 0 00
Q ss_pred cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~ 215 (515)
+ ...+...+.+.+++.| +++++++++++++.
T Consensus 181 ------------------~---------------~~~~~~~l~~~l~~~g-V~i~~~~~v~~i~~--------------- 211 (377)
T PRK04965 181 ------------------M---------------PPEVSSRLQHRLTEMG-VHLLLKSQLQGLEK--------------- 211 (377)
T ss_pred ------------------C---------------CHHHHHHHHHHHHhCC-CEEEECCeEEEEEc---------------
Confidence 0 0123345666677777 99999999999975
Q ss_pred ccccccCCeeEEEcCCCcEEEeeEEEEecCCCch--hhhhcCC
Q 010200 216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR--VRELAGF 256 (515)
Q Consensus 216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~--vr~~l~~ 256 (515)
+...+.+.+.+|+++.+|+||.|+|..+. +.+..+.
T Consensus 212 -----~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~gl 249 (377)
T PRK04965 212 -----TDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRAGL 249 (377)
T ss_pred -----cCCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHCCC
Confidence 23456788889999999999999998654 4444444
No 229
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.24 E-value=2.1e-06 Score=85.50 Aligned_cols=155 Identities=20% Similarity=0.244 Sum_probs=77.1
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhH--HHHHHHcCCchhhhh
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPAT--ISFFKEIGAWQYVQQ 132 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~l~~lgl~~~~~~ 132 (515)
.+|+|+||.||++|++|++|... ...++..|||.+...-.. |..+.... ..+|+.|--.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~---~~~~~~f~e~~~~f~Wh~-----------gmll~~~~~q~~fl~Dlvt~----- 62 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEH---GDLKALFLERRPSFSWHP-----------GMLLPGARMQVSFLKDLVTL----- 62 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHH---H---EEEEES-SS--TTG-----------GG--SS-B-SS-TTSSSSTT-----
T ss_pred ceeEEEEeeCHHHHHHHHHhhhc---CCCCEEEEecCCCCCcCC-----------ccCCCCCccccccccccCcC-----
Confidence 48999999999999999999997 258999999988652111 11111000 1122221100
Q ss_pred hhccccceEEEE---eCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCccc
Q 010200 133 HRHAYFDKMQVW---DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISV 209 (515)
Q Consensus 133 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~ 209 (515)
.. +.....+. ...+. ...+-. ...+...|.++.++|.-.+.+.+ -.++++.+|++|+..
T Consensus 63 -~~-P~s~~sflnYL~~~~r-l~~f~~------~~~~~p~R~ef~dYl~Wva~~~~-~~v~~~~~V~~I~~~-------- 124 (341)
T PF13434_consen 63 -RD-PTSPFSFLNYLHEHGR-LYEFYN------RGYFFPSRREFNDYLRWVAEQLD-NQVRYGSEVTSIEPD-------- 124 (341)
T ss_dssp -T--TTSTTSHHHHHHHTT--HHHHHH------H--SS-BHHHHHHHHHHHHCCGT-TTEEESEEEEEEEEE--------
T ss_pred -cC-CCCcccHHHHHHHcCC-hhhhhh------cCCCCCCHHHHHHHHHHHHHhCC-CceEECCEEEEEEEe--------
Confidence 00 00000000 00000 000000 00134678999999998888887 568999999999871
Q ss_pred CCCCCcccccccCCeeEEEcC----CCcEEEeeEEEEecCCCchhhhhc
Q 010200 210 DSTPSATTLFTKGHLAKLDLS----DGTSLYAKLVVGADGGKSRVRELA 254 (515)
Q Consensus 210 ~~~~~~~~~~~~~~~~~v~~~----~g~~~~ad~vV~AdG~~S~vr~~l 254 (515)
.+. ....++|... +++++.|+.||.|.|..-.+...+
T Consensus 125 -~~~-------~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~iP~~~ 165 (341)
T PF13434_consen 125 -DDG-------DEDLFRVTTRDSDGDGETYRARNVVLATGGQPRIPEWF 165 (341)
T ss_dssp -EET-------TEEEEEEEEEETTS-EEEEEESEEEE----EE---GGG
T ss_pred -cCC-------CccEEEEEEeecCCCeeEEEeCeEEECcCCCCCCCcch
Confidence 110 1135777763 345899999999999655555544
No 230
>PLN03000 amine oxidase
Probab=98.23 E-value=0.0002 Score=78.39 Aligned_cols=42 Identities=24% Similarity=0.481 Sum_probs=37.2
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNF 99 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~ 99 (515)
...+|+|||||++||++|..|++. |++|+|||++..++.+.+
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~----G~~V~VlE~~~riGGRi~ 224 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRF----GFKVTVLEGRKRPGGRVY 224 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHC----CCcEEEEEccCcCCCCcc
Confidence 457999999999999999999996 999999999998875543
No 231
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=98.21 E-value=5.5e-06 Score=85.57 Aligned_cols=55 Identities=13% Similarity=0.081 Sum_probs=41.1
Q ss_pred HHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhh
Q 010200 176 SLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVR 251 (515)
Q Consensus 176 ~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr 251 (515)
.+...+...| .+|+++++|++|+. .++.+++.+.+|+++.||.||.|.......+
T Consensus 214 ~~~~~~~~~g-~~i~l~~~V~~I~~--------------------~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~ 268 (450)
T PF01593_consen 214 ALALAAEELG-GEIRLNTPVTRIER--------------------EDGGVTVTTEDGETIEADAVISAVPPSVLKN 268 (450)
T ss_dssp HHHHHHHHHG-GGEESSEEEEEEEE--------------------ESSEEEEEETTSSEEEESEEEE-S-HHHHHT
T ss_pred HHHHHHhhcC-ceeecCCcceeccc--------------------cccccccccccceEEecceeeecCchhhhhh
Confidence 3333344345 68999999999987 5578999999999999999998887655544
No 232
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.21 E-value=4.5e-06 Score=85.66 Aligned_cols=38 Identities=34% Similarity=0.564 Sum_probs=34.2
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
+.+||++||||||+|..+|+.+++. |.+|.|+|+....
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~----G~kvalvE~~~~l 39 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQL----GLKVALVEKGERL 39 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC----CCCEEEEeecCCc
Confidence 4579999999999999999999997 7889999999644
No 233
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.18 E-value=1.4e-06 Score=91.87 Aligned_cols=40 Identities=33% Similarity=0.534 Sum_probs=36.6
Q ss_pred CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (515)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~ 95 (515)
+..++||||||||.|||.+|+.++.. |++|+|+||....+
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~----g~~V~l~~K~~~~r 42 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEA----GLKVALLSKAPPKR 42 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhc----CCcEEEEEccccCC
Confidence 44679999999999999999999996 89999999998776
No 234
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.18 E-value=3.2e-06 Score=84.89 Aligned_cols=39 Identities=33% Similarity=0.757 Sum_probs=32.9
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~ 95 (515)
++|+|||||++|+.+|.+|.+.+-..+. |.|||+.+..+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~-Isi~e~~~~~G 40 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGL-ISIFEPRPNFG 40 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCc-eEEeccccccC
Confidence 6899999999999999999987432333 99999999874
No 235
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.18 E-value=2.9e-05 Score=83.70 Aligned_cols=34 Identities=32% Similarity=0.537 Sum_probs=31.8
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN 91 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~ 91 (515)
.+|||+|||+||+|.++|+.+++. |.+|+|+|++
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~----G~kV~lie~~ 148 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMER----GLKVIIFTGD 148 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHC----CCcEEEEeCC
Confidence 379999999999999999999996 9999999975
No 236
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.17 E-value=7.4e-06 Score=91.02 Aligned_cols=39 Identities=21% Similarity=0.439 Sum_probs=32.2
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
.+|||||||+||+.+|..|.+.....+++|+||++.+.+
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~ 42 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI 42 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC
Confidence 489999999999999999976421136899999999866
No 237
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.16 E-value=1.7e-05 Score=83.11 Aligned_cols=101 Identities=15% Similarity=0.239 Sum_probs=77.8
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (515)
.-+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+. -.+
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~----g~~Vtli~~~~~~l---------------~~~--------------------- 214 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAAL----GVKVTLINTRDRLL---------------SFL--------------------- 214 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc----CCeEEEEecCCCcC---------------CcC---------------------
Confidence 35799999999999999999996 89999999877440 000
Q ss_pred ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (515)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~ 214 (515)
-.++...|.+.+++.| ++++.+++|++++.
T Consensus 215 -----------------------------------d~~~~~~l~~~l~~~g-I~v~~~~~v~~i~~-------------- 244 (461)
T PRK05249 215 -----------------------------------DDEISDALSYHLRDSG-VTIRHNEEVEKVEG-------------- 244 (461)
T ss_pred -----------------------------------CHHHHHHHHHHHHHcC-CEEEECCEEEEEEE--------------
Confidence 0123345666677777 99999999999975
Q ss_pred cccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhh
Q 010200 215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVR 251 (515)
Q Consensus 215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr 251 (515)
.+..+.+++.+|+++.+|.||.|.|......
T Consensus 245 ------~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 245 ------GDDGVIVHLKSGKKIKADCLLYANGRTGNTD 275 (461)
T ss_pred ------eCCeEEEEECCCCEEEeCEEEEeecCCcccc
Confidence 2245677777888899999999999877653
No 238
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.16 E-value=6.9e-06 Score=82.70 Aligned_cols=38 Identities=26% Similarity=0.545 Sum_probs=34.4
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
..++||+|||||-+|.-+|+-.+- +|++|.++|++...
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~T----RGLktaLVE~~DF~ 102 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAAT----RGLKTALVEAGDFA 102 (680)
T ss_pred CCcccEEEECCCccCcceeehhhc----ccceeEEEeccccc
Confidence 456999999999999999998888 49999999999876
No 239
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.16 E-value=3.2e-06 Score=85.58 Aligned_cols=154 Identities=16% Similarity=0.188 Sum_probs=89.9
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC-CCCCCCCCCCCCCCcEEEeCHhHHHHHHHcC-Cchhhh
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL-GKSNFIKKEDPPDPRVSTVTPATISFFKEIG-AWQYVQ 131 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lg-l~~~~~ 131 (515)
..|||+|||||-||+-+|++.+|. |.+++++--+... +.-.| +..-.+-+-+.- ++.++.|| +.....
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARm----G~ktlLlT~~~dtig~msC---NPaIGG~~KG~l---vrEIDALGG~Mg~~~ 72 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARM----GAKTLLLTLNLDTIGEMSC---NPAIGGPGKGHL---VREIDALGGLMGKAA 72 (621)
T ss_pred CCCceEEECCCccchHHHHhhhcc----CCeEEEEEcCCCceeeccc---ccccCCccccee---EEeehhccchHHHhh
Confidence 459999999999999999999997 9999998766542 22334 111111111111 11222222 111111
Q ss_pred hhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCC
Q 010200 132 QHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS 211 (515)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~ 211 (515)
+... -.+++.+......+ ...-..+++.....++.+.++...+.+++.+ .|+++..
T Consensus 73 D~~~---IQ~r~LN~sKGPAV---------ra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~----------- 128 (621)
T COG0445 73 DKAG---IQFRMLNSSKGPAV---------RAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIV----------- 128 (621)
T ss_pred hhcC---CchhhccCCCcchh---------cchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhh-----------
Confidence 1111 00111111110000 0011246677777788888888888888865 7888765
Q ss_pred CCCcccccccC-CeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200 212 TPSATTLFTKG-HLAKLDLSDGTSLYAKLVVGADGGKSR 249 (515)
Q Consensus 212 ~~~~~~~~~~~-~~~~v~~~~g~~~~ad~vV~AdG~~S~ 249 (515)
+++ ..+.|.+.+|..+.|+.||.++|-+=.
T Consensus 129 --------e~~~~v~GV~t~~G~~~~a~aVVlTTGTFL~ 159 (621)
T COG0445 129 --------EEGQRVVGVVTADGPEFHAKAVVLTTGTFLR 159 (621)
T ss_pred --------cCCCeEEEEEeCCCCeeecCEEEEeeccccc
Confidence 122 356788899999999999999997543
No 240
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.15 E-value=9.5e-06 Score=82.21 Aligned_cols=37 Identities=19% Similarity=0.356 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
+|||||||+||+.+|..|++.. .++.+|+|+|+....
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~-~~~~~I~li~~~~~~ 37 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP-LPGVRVTLINPSSTT 37 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC-CCCCEEEEECCCCCC
Confidence 4899999999999999996531 147899999988754
No 241
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.14 E-value=7.8e-06 Score=85.63 Aligned_cols=35 Identities=29% Similarity=0.526 Sum_probs=31.5
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN 91 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~ 91 (515)
+.|||+||||||+|..+|+.+++. .|.+|+|+|+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~---~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATL---YKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHh---cCCEEEEEecc
Confidence 469999999999999999999993 17999999985
No 242
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=98.14 E-value=7.2e-06 Score=72.77 Aligned_cols=148 Identities=21% Similarity=0.211 Sum_probs=84.6
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (515)
.||+|||+|-+||++|+..++.. +.++|.|+|..-.|+...|. +........+-..+.-+|+++|+..+
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~r--PdlkvaIIE~SVaPGGGaWL---GGQLFSAMvvRKPAhLFL~EigvpYe------ 145 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNR--PDLKVAIIESSVAPGGGAWL---GGQLFSAMVVRKPAHLFLQEIGVPYE------ 145 (328)
T ss_pred cceEEECCCccccceeeeeeccC--CCceEEEEEeeecCCCcccc---cchhhhhhhhcChHHHHHHHhCCCcc------
Confidence 59999999999999999998532 58999999999888544441 00000011112222334555544110
Q ss_pred cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~ 215 (515)
. ...+-..-+..-+......++..+++++++--+.|.++.. .+..+|
T Consensus 146 ----------d--------------egdYVVVKHAALFtSTvmsk~LalPNVKLFNAtavEDLiv---------k~g~~g 192 (328)
T KOG2960|consen 146 ----------D--------------EGDYVVVKHAALFTSTVMSKVLALPNVKLFNATAVEDLIV---------KPGEKG 192 (328)
T ss_pred ----------c--------------CCCEEEEeeHHHHHHHHHHHHhcCCcceeechhhhhhhhc---------ccCcCC
Confidence 0 0111112233456666777777788888887777777755 111211
Q ss_pred ccccccC----CeeEEEc-CCC-------cEEEeeEEEEecCCCchh
Q 010200 216 TTLFTKG----HLAKLDL-SDG-------TSLYAKLVVGADGGKSRV 250 (515)
Q Consensus 216 ~~~~~~~----~~~~v~~-~~g-------~~~~ad~vV~AdG~~S~v 250 (515)
+... ..|++.. ..| ..+++.+||-++|..++.
T Consensus 193 ---~~rvaGVVTNWtLV~qnHgtQsCMDPNviea~~vvS~tGHDGPF 236 (328)
T KOG2960|consen 193 ---EVRVAGVVTNWTLVTQNHGTQSCMDPNVIEAAVVVSTTGHDGPF 236 (328)
T ss_pred ---ceEEEEEEeeeEEeeeccCccccCCCCeeeEEEEEEccCCCCCc
Confidence 0000 0122222 222 368999999999988775
No 243
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.14 E-value=9.8e-06 Score=82.51 Aligned_cols=37 Identities=14% Similarity=0.400 Sum_probs=31.9
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
.+|||||||+||+.+|..|++.+ +..+|+|+++++..
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~--~~~~Itvi~~~~~~ 39 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQD--AHIPITLITADSGD 39 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhC--cCCCEEEEeCCCCC
Confidence 48999999999999999998853 46799999998854
No 244
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.12 E-value=7.2e-06 Score=85.32 Aligned_cols=38 Identities=32% Similarity=0.410 Sum_probs=34.4
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
...++|+||||||+||++|..|++. |++|+|||+.+.+
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~----G~~V~vie~~~~~ 168 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKA----GHSVTVFEALHKP 168 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC----CCcEEEEecCCCC
Confidence 4568999999999999999999996 9999999998755
No 245
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=4.3e-06 Score=84.80 Aligned_cols=68 Identities=22% Similarity=0.302 Sum_probs=49.5
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCC--CCCCCCCCCCcEEEeC----HhHHHHHHHcCCc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSN--FIKKEDPPDPRVSTVT----PATISFFKEIGAW 127 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~--~~~~~~~~~~~~~~l~----~~~~~~l~~lgl~ 127 (515)
++|+|+|||+|||++|+.|+.+ |++|+|+|+++.++.+. |.+..+...--|+.+. ++.+..|++++..
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~----g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~~ll~~~~~~ 74 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADA----GYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKELPIE 74 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhC----CCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHHHHHHHhhhCCch
Confidence 3799999999999999999997 99999999999998654 3333333333344332 4556677776543
No 246
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.12 E-value=3e-05 Score=80.17 Aligned_cols=37 Identities=19% Similarity=0.387 Sum_probs=32.0
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
...+|||||||.||+.+|..|.+. +++|+|+|+++..
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~----~~~ItlI~~~~~~ 45 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPK----KYNITVISPRNHM 45 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcC----CCeEEEEcCCCCc
Confidence 456899999999999999999763 7899999988754
No 247
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.12 E-value=1.2e-05 Score=84.29 Aligned_cols=33 Identities=36% Similarity=0.540 Sum_probs=31.1
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN 91 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~ 91 (515)
+|||+||||||+|+.+|+.+++. |.+|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~----G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADY----GAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHC----CCeEEEEecc
Confidence 58999999999999999999996 9999999974
No 248
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.10 E-value=8e-06 Score=90.52 Aligned_cols=37 Identities=27% Similarity=0.461 Sum_probs=33.7
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
...+|+|||||||||++|..|++. |++|+|||+.+.+
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~----G~~V~v~e~~~~~ 466 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKR----GYDVTVFEALHEI 466 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC----CCeEEEEecCCCC
Confidence 467999999999999999999996 9999999997655
No 249
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.10 E-value=2.3e-05 Score=82.04 Aligned_cols=99 Identities=22% Similarity=0.346 Sum_probs=74.7
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (515)
-+|+|||||++|+-+|..|++. |.+|+++|+.+.+. + .+
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~----g~~Vtli~~~~~~l----------~-----~~---------------------- 211 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASL----GAEVTIVEALPRIL----------P-----GE---------------------- 211 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHc----CCeEEEEEcCCCcC----------C-----cC----------------------
Confidence 5799999999999999999996 89999999877430 0 00
Q ss_pred cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~ 215 (515)
...+...+.+.+++.| ++++.+++|++++.
T Consensus 212 ----------------------------------~~~~~~~l~~~l~~~g-V~i~~~~~V~~i~~--------------- 241 (462)
T PRK06416 212 ----------------------------------DKEISKLAERALKKRG-IKIKTGAKAKKVEQ--------------- 241 (462)
T ss_pred ----------------------------------CHHHHHHHHHHHHHcC-CEEEeCCEEEEEEE---------------
Confidence 0123345566666777 99999999999975
Q ss_pred ccccccCCeeEEEcCCC---cEEEeeEEEEecCCCchh
Q 010200 216 TTLFTKGHLAKLDLSDG---TSLYAKLVVGADGGKSRV 250 (515)
Q Consensus 216 ~~~~~~~~~~~v~~~~g---~~~~ad~vV~AdG~~S~v 250 (515)
+...+.+.+.++ +++.+|.||.|.|.....
T Consensus 242 -----~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~ 274 (462)
T PRK06416 242 -----TDDGVTVTLEDGGKEETLEADYVLVAVGRRPNT 274 (462)
T ss_pred -----eCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCC
Confidence 223566666555 579999999999987654
No 250
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.09 E-value=7.9e-06 Score=90.65 Aligned_cols=36 Identities=19% Similarity=0.381 Sum_probs=30.4
Q ss_pred EEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 58 VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 58 VvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
|||||||+||+.+|..|.+... .+++|+|||+.+.+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~-~~~~Itvi~~e~~~ 36 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNR-HMFEITIFGEEPHP 36 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCC-CCCeEEEEeCCCCC
Confidence 6899999999999999877521 36899999998865
No 251
>PRK07846 mycothione reductase; Reviewed
Probab=98.09 E-value=1.3e-05 Score=83.47 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=27.4
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
+|||+||||||+|.++|.. +. |.+|+|+|++.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~----G~~V~lie~~~ 32 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FA----DKRIAIVEKGT 32 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HC----CCeEEEEeCCC
Confidence 3899999999999988865 33 89999999864
No 252
>PRK06116 glutathione reductase; Validated
Probab=98.09 E-value=3.4e-05 Score=80.52 Aligned_cols=101 Identities=18% Similarity=0.184 Sum_probs=76.4
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (515)
.-+|+|||||++|+-+|..|++. |.+|+++++.+.+. ..+.
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~----g~~Vtlv~~~~~~l---------------~~~~-------------------- 207 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGL----GSETHLFVRGDAPL---------------RGFD-------------------- 207 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc----CCeEEEEecCCCCc---------------cccC--------------------
Confidence 35799999999999999999996 89999999876430 0000
Q ss_pred ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (515)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~ 214 (515)
.++...+.+.+++.| ++++++++|.+++.
T Consensus 208 ------------------------------------~~~~~~l~~~L~~~G-V~i~~~~~V~~i~~-------------- 236 (450)
T PRK06116 208 ------------------------------------PDIRETLVEEMEKKG-IRLHTNAVPKAVEK-------------- 236 (450)
T ss_pred ------------------------------------HHHHHHHHHHHHHCC-cEEECCCEEEEEEE--------------
Confidence 123345666677777 99999999999975
Q ss_pred cccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200 215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 250 (515)
Q Consensus 215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v 250 (515)
+.+..+.+.+.+|+++.+|.||.|.|.....
T Consensus 237 -----~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~ 267 (450)
T PRK06116 237 -----NADGSLTLTLEDGETLTVDCLIWAIGREPNT 267 (450)
T ss_pred -----cCCceEEEEEcCCcEEEeCEEEEeeCCCcCC
Confidence 0112366777888899999999999986654
No 253
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.08 E-value=2.8e-05 Score=79.71 Aligned_cols=98 Identities=21% Similarity=0.306 Sum_probs=75.3
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (515)
-+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+. .. .
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~----g~~Vtlv~~~~~~l--------------------------~~------~----- 183 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQR----RCKVTVIELAATVM--------------------------GR------N----- 183 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHc----CCeEEEEecCCcch--------------------------hh------h-----
Confidence 4799999999999999999996 89999999877440 00 0
Q ss_pred cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~ 215 (515)
....+...+.+.+++.| +++++++++++++.
T Consensus 184 ---------------------------------~~~~~~~~l~~~l~~~G-V~i~~~~~V~~i~~--------------- 214 (396)
T PRK09754 184 ---------------------------------APPPVQRYLLQRHQQAG-VRILLNNAIEHVVD--------------- 214 (396)
T ss_pred ---------------------------------cCHHHHHHHHHHHHHCC-CEEEeCCeeEEEEc---------------
Confidence 00123355666677777 99999999999853
Q ss_pred ccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200 216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR 249 (515)
Q Consensus 216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~ 249 (515)
+..+.+.+.+|+++.+|+||.|.|....
T Consensus 215 ------~~~~~v~l~~g~~i~aD~Vv~a~G~~pn 242 (396)
T PRK09754 215 ------GEKVELTLQSGETLQADVVIYGIGISAN 242 (396)
T ss_pred ------CCEEEEEECCCCEEECCEEEECCCCChh
Confidence 1346677888989999999999998654
No 254
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=7.2e-06 Score=81.28 Aligned_cols=158 Identities=17% Similarity=0.209 Sum_probs=88.2
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC-CCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhh
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA-LGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ 131 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~ 131 (515)
...|||||||||-||+-+|.+.+|. |.+.+++-.+-. .+.-+|+-. -...++|..+ +-+++|. |+-..+-
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~----Ga~TlLlT~~ld~Ig~msCNPs-fGGigKg~Lm--rEVDALd--Gl~~rvc 96 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARL----GARTLLLTHNLDTIGEMSCNPS-FGGIGKGHLM--REVDALD--GLCSRVC 96 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhc----CCceEEeecccccccccccCcc-cCCcccceee--eeehhhc--chHhhhh
Confidence 4679999999999999999999997 889888876643 444445111 1111222222 1122221 1111111
Q ss_pred hhhccccceEEEEeCCCccceeeecccCCCC-cceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccC
Q 010200 132 QHRHAYFDKMQVWDYTGLGYTKYNARDVNKE-ILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD 210 (515)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~ 210 (515)
+. ..+++ ..++....+.. ..-..++|..+-..+.+.+....+.+|+.+ .|.++.. +
T Consensus 97 D~-----s~vq~--------k~LNrs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~-~V~dliv---------~ 153 (679)
T KOG2311|consen 97 DQ-----SGVQY--------KVLNRSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREG-AVADLIV---------E 153 (679)
T ss_pred hh-----hhhhH--------HHhhccCCCcccChHHhhhHHHHHHHHHHHhccCCcchhhhh-hhhheee---------c
Confidence 11 11110 00000000000 000246677777777777766666778866 7777765 2
Q ss_pred CCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCC
Q 010200 211 STPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGK 247 (515)
Q Consensus 211 ~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~ 247 (515)
+.+++ ......|...||..+.++-||..+|-+
T Consensus 154 ~~~~~-----~~~~~gV~l~dgt~v~a~~VilTTGTF 185 (679)
T KOG2311|consen 154 DPDDG-----HCVVSGVVLVDGTVVYAESVILTTGTF 185 (679)
T ss_pred cCCCC-----ceEEEEEEEecCcEeccceEEEeeccc
Confidence 22222 222344677899999999999999974
No 255
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.08 E-value=3.6e-06 Score=87.55 Aligned_cols=45 Identities=20% Similarity=0.474 Sum_probs=39.6
Q ss_pred CCCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCC
Q 010200 51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNF 99 (515)
Q Consensus 51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~ 99 (515)
...++.+|||||||+|||+||..|.+. |++|+|+|.+..++.+..
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~----G~~V~VLEARdRvGGRI~ 55 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDF----GFDVLVLEARDRVGGRIY 55 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHc----CCceEEEeccCCcCceeE
Confidence 344568999999999999999999997 999999999999986543
No 256
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.07 E-value=1.8e-05 Score=74.78 Aligned_cols=35 Identities=23% Similarity=0.521 Sum_probs=31.0
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~ 95 (515)
.|||||+|.|||+++..+-.. |-.|+++|+....+
T Consensus 11 pvvVIGgGLAGLsasn~iin~----gg~V~llek~~s~G 45 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINK----GGIVILLEKAGSIG 45 (477)
T ss_pred cEEEECCchhhhhhHHHHHhc----CCeEEEEeccCCcC
Confidence 599999999999999999885 55699999998774
No 257
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.06 E-value=8e-06 Score=89.57 Aligned_cols=38 Identities=26% Similarity=0.345 Sum_probs=33.7
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
....+|+|||||||||++|+.|++. |++|+|||+.+..
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~----Gh~Vtv~E~~~i~ 418 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRS----GHNVTAIDGLKIT 418 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhC----CCeEEEEcccccc
Confidence 3567999999999999999999995 9999999987643
No 258
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.04 E-value=8.9e-06 Score=92.10 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=33.7
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
...+|+|||||||||++|..|++. |++|+|||+.+.+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~----G~~VtV~E~~~~~ 465 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKY----GVDVTVYEALHVV 465 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc----CCcEEEEecCCCC
Confidence 357999999999999999999996 9999999998765
No 259
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.03 E-value=1.1e-05 Score=84.24 Aligned_cols=38 Identities=29% Similarity=0.405 Sum_probs=34.2
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
....+|+||||||+|+++|..|++. |++|+|||+.+.+
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~----g~~V~lie~~~~~ 175 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARK----GYDVTIFEARDKA 175 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC----CCeEEEEccCCCC
Confidence 3457999999999999999999996 9999999998755
No 260
>PLN02507 glutathione reductase
Probab=98.01 E-value=5.2e-05 Score=79.89 Aligned_cols=99 Identities=15% Similarity=0.157 Sum_probs=76.2
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (515)
-+|+|||||+.|+-+|..|++. |.+|+|+++.+.+. -.+.
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~----G~~Vtli~~~~~~l---------------~~~d--------------------- 243 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGM----GATVDLFFRKELPL---------------RGFD--------------------- 243 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHc----CCeEEEEEecCCcC---------------cccC---------------------
Confidence 4799999999999999999996 89999999876430 0000
Q ss_pred cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~ 215 (515)
.++...+.+.+++.| ++++.+++|++++.
T Consensus 244 -----------------------------------~~~~~~l~~~l~~~G-I~i~~~~~V~~i~~--------------- 272 (499)
T PLN02507 244 -----------------------------------DEMRAVVARNLEGRG-INLHPRTNLTQLTK--------------- 272 (499)
T ss_pred -----------------------------------HHHHHHHHHHHHhCC-CEEEeCCEEEEEEE---------------
Confidence 123344566666777 99999999999975
Q ss_pred ccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200 216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 250 (515)
Q Consensus 216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v 250 (515)
.++.+.+.+.+|+++.+|.||.|.|.....
T Consensus 273 -----~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~ 302 (499)
T PLN02507 273 -----TEGGIKVITDHGEEFVADVVLFATGRAPNT 302 (499)
T ss_pred -----eCCeEEEEECCCcEEEcCEEEEeecCCCCC
Confidence 224567777788889999999999987665
No 261
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.00 E-value=1.1e-05 Score=84.03 Aligned_cols=32 Identities=19% Similarity=0.325 Sum_probs=27.2
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
+|||+||||||+|..+|.. ++ |.+|+|+|++.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~----g~~V~lie~~~ 33 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FA----DKRIAIVEKGT 33 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HC----CCeEEEEeCCC
Confidence 5999999999999888643 44 89999999865
No 262
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.99 E-value=6.1e-05 Score=78.74 Aligned_cols=99 Identities=22% Similarity=0.327 Sum_probs=72.5
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (515)
-+|+|||||++|+-+|..|++. |.+|+|+|+.+.+.
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~----g~~Vtli~~~~~ll---------------------------------------- 206 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRL----GTKVTIVEMAPQLL---------------------------------------- 206 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHc----CCeEEEEecCCCcC----------------------------------------
Confidence 4799999999999999999996 89999999876430
Q ss_pred cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~ 215 (515)
+ . . -.++.+.+.+.+++.| ++++++++|++++.
T Consensus 207 -~----------~-------------------~-d~e~~~~l~~~L~~~G-I~i~~~~~V~~i~~--------------- 239 (458)
T PRK06912 207 -P----------G-------------------E-DEDIAHILREKLENDG-VKIFTGAALKGLNS--------------- 239 (458)
T ss_pred -c----------c-------------------c-cHHHHHHHHHHHHHCC-CEEEECCEEEEEEE---------------
Confidence 0 0 0 0123455666777777 99999999999965
Q ss_pred ccccccCCeeEEEcCCC-cEEEeeEEEEecCCCchh
Q 010200 216 TTLFTKGHLAKLDLSDG-TSLYAKLVVGADGGKSRV 250 (515)
Q Consensus 216 ~~~~~~~~~~~v~~~~g-~~~~ad~vV~AdG~~S~v 250 (515)
....+.+...++ .++.+|+||.|+|....+
T Consensus 240 -----~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~ 270 (458)
T PRK06912 240 -----YKKQALFEYEGSIQEVNAEFVLVSVGRKPRV 270 (458)
T ss_pred -----cCCEEEEEECCceEEEEeCEEEEecCCccCC
Confidence 223344443222 369999999999987765
No 263
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.99 E-value=3.9e-05 Score=76.64 Aligned_cols=41 Identities=22% Similarity=0.465 Sum_probs=35.3
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSN 98 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~ 98 (515)
..+|||||||+|||++|..|.+.+ +.+|+|+|.....+.+.
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~g---f~~~~IlEa~dRIGGRI 61 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENG---FIDVLILEASDRIGGRI 61 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhC---CceEEEEEeccccCceE
Confidence 358999999999999999999763 67999999999886543
No 264
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.99 E-value=6e-05 Score=78.49 Aligned_cols=99 Identities=19% Similarity=0.269 Sum_probs=74.9
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (515)
-+|+|||||++|+-+|..|++. |.+|+|+|+.+.+. ..+
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~----G~~Vtli~~~~~~l---------------~~~---------------------- 205 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGL----GVQVTLIYRGELIL---------------RGF---------------------- 205 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHc----CCeEEEEEeCCCCC---------------ccc----------------------
Confidence 4799999999999999999986 89999999876330 000
Q ss_pred cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~ 215 (515)
-.++...+.+.+++.| ++++.+++|++++.
T Consensus 206 ----------------------------------d~~~~~~l~~~l~~~g-V~i~~~~~v~~i~~--------------- 235 (446)
T TIGR01424 206 ----------------------------------DDDMRALLARNMEGRG-IRIHPQTSLTSITK--------------- 235 (446)
T ss_pred ----------------------------------CHHHHHHHHHHHHHCC-CEEEeCCEEEEEEE---------------
Confidence 0123344556666777 99999999999975
Q ss_pred ccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200 216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 250 (515)
Q Consensus 216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v 250 (515)
.+..+.+.+.+|+++.+|.||.|.|.....
T Consensus 236 -----~~~~~~v~~~~g~~i~~D~viva~G~~pn~ 265 (446)
T TIGR01424 236 -----TDDGLKVTLSHGEEIVADVVLFATGRSPNT 265 (446)
T ss_pred -----cCCeEEEEEcCCcEeecCEEEEeeCCCcCC
Confidence 223466777788889999999999986554
No 265
>PRK07208 hypothetical protein; Provisional
Probab=97.99 E-value=6.7e-06 Score=86.57 Aligned_cols=41 Identities=22% Similarity=0.516 Sum_probs=36.9
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCC
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS 97 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~ 97 (515)
++..||+|||||++||++|+.|++. |++|+|+|+.+.++..
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~----g~~v~v~E~~~~~GG~ 42 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKR----GYPVTVLEADPVVGGI 42 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHC----CCcEEEEecCCCCCce
Confidence 4668999999999999999999996 9999999999987643
No 266
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.98 E-value=5.7e-05 Score=78.55 Aligned_cols=99 Identities=14% Similarity=0.215 Sum_probs=72.9
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (515)
.-+|+|||||++|+-+|..|++. |.+|+|+|+.+.+. .
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~----g~~Vtli~~~~~~l-----------------------------~--------- 194 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKL----GSKVTVLDAASTIL-----------------------------P--------- 194 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc----CCeEEEEecCCccC-----------------------------C---------
Confidence 34799999999999999999996 89999999987430 0
Q ss_pred ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (515)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~ 214 (515)
. ....+...+.+.+++.| ++++.+++|++++.
T Consensus 195 --~-------------------------------~~~~~~~~~~~~l~~~G-I~i~~~~~V~~i~~-------------- 226 (438)
T PRK07251 195 --R-------------------------------EEPSVAALAKQYMEEDG-ITFLLNAHTTEVKN-------------- 226 (438)
T ss_pred --C-------------------------------CCHHHHHHHHHHHHHcC-CEEEcCCEEEEEEe--------------
Confidence 0 00122334556666777 99999999999965
Q ss_pred cccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200 215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 250 (515)
Q Consensus 215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v 250 (515)
++..+.+.. +++++.+|.||.|.|.....
T Consensus 227 ------~~~~v~v~~-~g~~i~~D~viva~G~~p~~ 255 (438)
T PRK07251 227 ------DGDQVLVVT-EDETYRFDALLYATGRKPNT 255 (438)
T ss_pred ------cCCEEEEEE-CCeEEEcCEEEEeeCCCCCc
Confidence 223455543 56689999999999987654
No 267
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=6.3e-05 Score=67.54 Aligned_cols=119 Identities=18% Similarity=0.160 Sum_probs=78.8
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (515)
..-+|+|||.|||+-++|+.++|+ .++.++||-.-.-+ ..+ |..+.
T Consensus 7 h~e~v~IiGSGPAa~tAAiYaara----elkPllfEG~~~~~--------i~p---GGQLt------------------- 52 (322)
T KOG0404|consen 7 HNENVVIIGSGPAAHTAAIYAARA----ELKPLLFEGMMANG--------IAP---GGQLT------------------- 52 (322)
T ss_pred eeeeEEEEccCchHHHHHHHHhhc----ccCceEEeeeeccC--------cCC---Cceee-------------------
Confidence 345899999999999999999997 78999999544220 000 00000
Q ss_pred hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200 134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP 213 (515)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~ 213 (515)
...+...++.-+ -.+.-.+|.+.++++.++.| .+|+.. .|.++..
T Consensus 53 ------------------TTT~veNfPGFP--dgi~G~~l~d~mrkqs~r~G-t~i~tE-tVskv~~------------- 97 (322)
T KOG0404|consen 53 ------------------TTTDVENFPGFP--DGITGPELMDKMRKQSERFG-TEIITE-TVSKVDL------------- 97 (322)
T ss_pred ------------------eeeccccCCCCC--cccccHHHHHHHHHHHHhhc-ceeeee-ehhhccc-------------
Confidence 000001111111 12566789999999999998 788775 7777765
Q ss_pred CcccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200 214 SATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR 249 (515)
Q Consensus 214 ~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~ 249 (515)
.....++.. +...+.+|.||.|+|+..+
T Consensus 98 -------sskpF~l~t-d~~~v~~~avI~atGAsAk 125 (322)
T KOG0404|consen 98 -------SSKPFKLWT-DARPVTADAVILATGASAK 125 (322)
T ss_pred -------cCCCeEEEe-cCCceeeeeEEEeccccee
Confidence 334566655 4556999999999998543
No 268
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.96 E-value=7.9e-05 Score=78.04 Aligned_cols=99 Identities=18% Similarity=0.226 Sum_probs=76.0
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (515)
-+|+|||||..|+-+|..|++. |.+|+++|+.+.+.. ...
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~----g~~Vtli~~~~~~l~---------------~~d--------------------- 217 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTEL----GVKVTLVSSRDRVLP---------------GED--------------------- 217 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHc----CCeEEEEEcCCcCCC---------------CCC---------------------
Confidence 4799999999999999999996 899999998774400 000
Q ss_pred cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~ 215 (515)
..+...+.+.+++.| ++++.++++++++.
T Consensus 218 -----------------------------------~~~~~~l~~~L~~~g-V~i~~~~~v~~v~~--------------- 246 (466)
T PRK07845 218 -----------------------------------ADAAEVLEEVFARRG-MTVLKRSRAESVER--------------- 246 (466)
T ss_pred -----------------------------------HHHHHHHHHHHHHCC-cEEEcCCEEEEEEE---------------
Confidence 112344566666777 99999999999965
Q ss_pred ccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200 216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 250 (515)
Q Consensus 216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v 250 (515)
..+.+.+.+.+|+++.+|.||.|.|.....
T Consensus 247 -----~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 247 -----TGDGVVVTLTDGRTVEGSHALMAVGSVPNT 276 (466)
T ss_pred -----eCCEEEEEECCCcEEEecEEEEeecCCcCC
Confidence 224467777788899999999999987664
No 269
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.96 E-value=6.9e-05 Score=78.06 Aligned_cols=100 Identities=14% Similarity=0.154 Sum_probs=75.3
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (515)
-+|+|||||..|+-+|..|++. |.+|+|+|+.+.+. -.+
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~----g~~Vtli~~~~~il---------------~~~---------------------- 205 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGL----GSETHLVIRHERVL---------------RSF---------------------- 205 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHc----CCcEEEEecCCCCC---------------ccc----------------------
Confidence 5899999999999999999996 89999999887540 000
Q ss_pred cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~ 215 (515)
-..+...+.+.+++.| ++++.++++++++.
T Consensus 206 ----------------------------------d~~~~~~~~~~l~~~g-I~i~~~~~v~~i~~--------------- 235 (450)
T TIGR01421 206 ----------------------------------DSMISETITEEYEKEG-INVHKLSKPVKVEK--------------- 235 (450)
T ss_pred ----------------------------------CHHHHHHHHHHHHHcC-CEEEcCCEEEEEEE---------------
Confidence 0123345666666677 99999999999975
Q ss_pred ccccccCCeeEEEcCCC-cEEEeeEEEEecCCCchh
Q 010200 216 TTLFTKGHLAKLDLSDG-TSLYAKLVVGADGGKSRV 250 (515)
Q Consensus 216 ~~~~~~~~~~~v~~~~g-~~~~ad~vV~AdG~~S~v 250 (515)
+....+.+++.+| +++.+|.||.|.|.....
T Consensus 236 ----~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~ 267 (450)
T TIGR01421 236 ----TVEGKLVIHFEDGKSIDDVDELIWAIGRKPNT 267 (450)
T ss_pred ----eCCceEEEEECCCcEEEEcCEEEEeeCCCcCc
Confidence 0112356777777 579999999999987665
No 270
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.95 E-value=2.3e-05 Score=81.96 Aligned_cols=37 Identities=35% Similarity=0.521 Sum_probs=33.9
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
...+|+||||||+|+++|..|++. |++|+|||+.+.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~----G~~V~i~e~~~~~ 176 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARA----GVQVVVFDRHPEI 176 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc----CCeEEEEecCCCC
Confidence 457999999999999999999996 9999999998865
No 271
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.95 E-value=4.8e-05 Score=73.69 Aligned_cols=38 Identities=37% Similarity=0.618 Sum_probs=35.4
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~ 95 (515)
..|||+|||+||.|-.+|+..++. |++.+++|++..++
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQl----GlkTacvEkr~~LG 75 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQL----GLKTACVEKRGTLG 75 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHh----cceeEEEeccCccC
Confidence 579999999999999999999997 99999999988773
No 272
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=1.3e-05 Score=76.48 Aligned_cols=114 Identities=24% Similarity=0.379 Sum_probs=80.0
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEE-cCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhh
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAII-DSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ 132 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~-E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~ 132 (515)
..|||+||||||||.++|+..+|. |++.-|+ ||-. |-. |+-+++
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARK----GiRTGl~aerfG-----------------GQv--------ldT~~I------ 254 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARK----GIRTGLVAERFG-----------------GQV--------LDTMGI------ 254 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhh----cchhhhhhhhhC-----------------Cee--------ccccch------
Confidence 469999999999999999999995 8876544 3322 101 111111
Q ss_pred hhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCC
Q 010200 133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST 212 (515)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~ 212 (515)
.. .+..+ ..+-.+|...|.++++++. +++....+.+.++. .
T Consensus 255 ------EN----------fIsv~-----------~teGpkl~~ale~Hv~~Y~-vDimn~qra~~l~~---------a-- 295 (520)
T COG3634 255 ------EN----------FISVP-----------ETEGPKLAAALEAHVKQYD-VDVMNLQRASKLEP---------A-- 295 (520)
T ss_pred ------hh----------eeccc-----------cccchHHHHHHHHHHhhcC-chhhhhhhhhccee---------c--
Confidence 00 00000 1234578899999999998 89988888888875 1
Q ss_pred CCcccccccCCeeEEEcCCCcEEEeeEEEEecCCC
Q 010200 213 PSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGK 247 (515)
Q Consensus 213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~ 247 (515)
.+.++-.+|++++|-.+.++-||.++|++
T Consensus 296 ------~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 296 ------AVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred ------CCCCccEEEEecCCceeccceEEEecCcc
Confidence 11346789999999999999999999984
No 273
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.93 E-value=9.9e-05 Score=75.89 Aligned_cols=101 Identities=21% Similarity=0.324 Sum_probs=79.6
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (515)
.+-.++|||||+.|+=.|..+++. |.+|+|+|+.+.+- . .
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~L----G~~VTiie~~~~iL-----------------------------p---~---- 211 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAAL----GSKVTVVERGDRIL-----------------------------P---G---- 211 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc----CCcEEEEecCCCCC-----------------------------C---c----
Confidence 345799999999999999999998 99999999998651 0 0
Q ss_pred hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200 134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP 213 (515)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~ 213 (515)
.-.++.+.+.+.+++.| ++++.+++++.++.
T Consensus 212 -----------------------------------~D~ei~~~~~~~l~~~g-v~i~~~~~v~~~~~------------- 242 (454)
T COG1249 212 -----------------------------------EDPEISKELTKQLEKGG-VKILLNTKVTAVEK------------- 242 (454)
T ss_pred -----------------------------------CCHHHHHHHHHHHHhCC-eEEEccceEEEEEe-------------
Confidence 00245566777777744 99999999999976
Q ss_pred CcccccccCCeeEEEcCCCc--EEEeeEEEEecCCCchh
Q 010200 214 SATTLFTKGHLAKLDLSDGT--SLYAKLVVGADGGKSRV 250 (515)
Q Consensus 214 ~~~~~~~~~~~~~v~~~~g~--~~~ad~vV~AdG~~S~v 250 (515)
.+..+.+.+++|. ++.+|.|+.|.|....+
T Consensus 243 -------~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~ 274 (454)
T COG1249 243 -------KDDGVLVTLEDGEGGTIEADAVLVAIGRKPNT 274 (454)
T ss_pred -------cCCeEEEEEecCCCCEEEeeEEEEccCCccCC
Confidence 3333888888776 78999999999986655
No 274
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.92 E-value=0.00038 Score=69.47 Aligned_cols=63 Identities=17% Similarity=0.237 Sum_probs=52.3
Q ss_pred EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCee-EEEcCCCcEEEeeEEEEec
Q 010200 166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLA-KLDLSDGTSLYAKLVVGAD 244 (515)
Q Consensus 166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~g~~~~ad~vV~Ad 244 (515)
..++...+...|.+.+.+.| ++++.+++|++++. .++.+ .|.+.+| ++.||.||.|+
T Consensus 132 g~v~p~~l~~~l~~~~~~~g-~~~~~~~~v~~i~~--------------------~~~~~~~v~~~~g-~~~a~~vV~a~ 189 (337)
T TIGR02352 132 AHVDPRALLKALEKALEKLG-VEIIEHTEVQHIEI--------------------RGEKVTAIVTPSG-DVQADQVVLAA 189 (337)
T ss_pred ceEChHHHHHHHHHHHHHcC-CEEEccceEEEEEe--------------------eCCEEEEEEcCCC-EEECCEEEEcC
Confidence 46788999999999999998 99999999999976 23333 4666666 79999999999
Q ss_pred CCCchh
Q 010200 245 GGKSRV 250 (515)
Q Consensus 245 G~~S~v 250 (515)
|+++.-
T Consensus 190 G~~~~~ 195 (337)
T TIGR02352 190 GAWAGE 195 (337)
T ss_pred Chhhhh
Confidence 999864
No 275
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.91 E-value=6.2e-05 Score=83.64 Aligned_cols=99 Identities=22% Similarity=0.371 Sum_probs=74.8
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (515)
.+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+. .. .+
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~----G~~Vtvv~~~~~ll--------------------------~~-----~l----- 180 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNL----GMDVSVIHHAPGLM--------------------------AK-----QL----- 180 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhc----CCeEEEEccCCchh--------------------------hh-----hc-----
Confidence 4799999999999999999996 99999999876330 00 00
Q ss_pred cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~ 215 (515)
-..+...+.+.+++.| ++++++++++++..
T Consensus 181 ----------------------------------d~~~~~~l~~~l~~~G-V~v~~~~~v~~i~~--------------- 210 (785)
T TIGR02374 181 ----------------------------------DQTAGRLLQRELEQKG-LTFLLEKDTVEIVG--------------- 210 (785)
T ss_pred ----------------------------------CHHHHHHHHHHHHHcC-CEEEeCCceEEEEc---------------
Confidence 0112344566667777 99999999999864
Q ss_pred ccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200 216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR 249 (515)
Q Consensus 216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~ 249 (515)
++....+.+.+|+++.+|+||.|.|....
T Consensus 211 -----~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn 239 (785)
T TIGR02374 211 -----ATKADRIRFKDGSSLEADLIVMAAGIRPN 239 (785)
T ss_pred -----CCceEEEEECCCCEEEcCEEEECCCCCcC
Confidence 22345677889999999999999997643
No 276
>PRK07846 mycothione reductase; Reviewed
Probab=97.91 E-value=0.0001 Score=76.78 Aligned_cols=99 Identities=15% Similarity=0.279 Sum_probs=72.5
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (515)
.-+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+. -.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~----G~~Vtli~~~~~ll---------------~~~d-------------------- 206 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSAL----GVRVTVVNRSGRLL---------------RHLD-------------------- 206 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc----CCeEEEEEcCCccc---------------cccC--------------------
Confidence 35899999999999999999996 89999999877430 0000
Q ss_pred ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (515)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~ 214 (515)
.++.+.+.+. .+.+ ++++.++++++++.
T Consensus 207 ------------------------------------~~~~~~l~~l-~~~~-v~i~~~~~v~~i~~-------------- 234 (451)
T PRK07846 207 ------------------------------------DDISERFTEL-ASKR-WDVRLGRNVVGVSQ-------------- 234 (451)
T ss_pred ------------------------------------HHHHHHHHHH-HhcC-eEEEeCCEEEEEEE--------------
Confidence 0111223222 2345 89999999999965
Q ss_pred cccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200 215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 250 (515)
Q Consensus 215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v 250 (515)
.+..+.+.+.+|+++.+|.||.|.|.....
T Consensus 235 ------~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~ 264 (451)
T PRK07846 235 ------DGSGVTLRLDDGSTVEADVLLVATGRVPNG 264 (451)
T ss_pred ------cCCEEEEEECCCcEeecCEEEEEECCccCc
Confidence 234567777788899999999999987654
No 277
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.91 E-value=4.4e-05 Score=72.54 Aligned_cols=37 Identities=35% Similarity=0.451 Sum_probs=34.2
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
..+||||||+|.|||.+|..|+.+ |.+|+|+|+...-
T Consensus 4 ~~~dvivvgaglaglvaa~elA~a----G~~V~ildQEgeq 40 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADA----GKRVLILDQEGEQ 40 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhc----CceEEEEcccccc
Confidence 468999999999999999999996 9999999998765
No 278
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.90 E-value=8.8e-05 Score=77.92 Aligned_cols=99 Identities=15% Similarity=0.279 Sum_probs=73.3
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (515)
-+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+. . ..
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~----g~~Vtli~~~~~~l----------~-----~~---------------------- 222 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRL----GAEVTILEALPAFL----------A-----AA---------------------- 222 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHc----CCeEEEEeCCCccC----------C-----cC----------------------
Confidence 5899999999999999999996 89999999877430 0 00
Q ss_pred cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~ 215 (515)
-.++...+.+.+++.| ++++.+++|++++.
T Consensus 223 ----------------------------------d~~~~~~~~~~l~~~g-i~i~~~~~v~~i~~--------------- 252 (475)
T PRK06327 223 ----------------------------------DEQVAKEAAKAFTKQG-LDIHLGVKIGEIKT--------------- 252 (475)
T ss_pred ----------------------------------CHHHHHHHHHHHHHcC-cEEEeCcEEEEEEE---------------
Confidence 0123345556666677 99999999999975
Q ss_pred ccccccCCeeEEEcCC--C--cEEEeeEEEEecCCCchh
Q 010200 216 TTLFTKGHLAKLDLSD--G--TSLYAKLVVGADGGKSRV 250 (515)
Q Consensus 216 ~~~~~~~~~~~v~~~~--g--~~~~ad~vV~AdG~~S~v 250 (515)
....+.+.+.+ | +++.+|.||.|.|.....
T Consensus 253 -----~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~ 286 (475)
T PRK06327 253 -----GGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNT 286 (475)
T ss_pred -----cCCEEEEEEEeCCCceeEEEcCEEEEccCCccCC
Confidence 22345555543 3 369999999999987664
No 279
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.89 E-value=8.9e-05 Score=77.00 Aligned_cols=94 Identities=12% Similarity=0.223 Sum_probs=72.3
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (515)
-+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+. -.+
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~----g~~Vtli~~~~~l~---------------~~~---------------------- 187 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYER----GLHPTLIHRSDKIN---------------KLM---------------------- 187 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhC----CCcEEEEecccccc---------------hhc----------------------
Confidence 4799999999999999999996 89999999877430 000
Q ss_pred cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~ 215 (515)
-.++...+.+.+++.| ++++++++|++++.
T Consensus 188 ----------------------------------d~~~~~~l~~~l~~~g-I~i~~~~~v~~i~~--------------- 217 (438)
T PRK13512 188 ----------------------------------DADMNQPILDELDKRE-IPYRLNEEIDAING--------------- 217 (438)
T ss_pred ----------------------------------CHHHHHHHHHHHHhcC-CEEEECCeEEEEeC---------------
Confidence 0123345666677777 99999999999853
Q ss_pred ccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200 216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR 249 (515)
Q Consensus 216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~ 249 (515)
. .+++++|+++.+|.||.|.|....
T Consensus 218 -------~--~v~~~~g~~~~~D~vl~a~G~~pn 242 (438)
T PRK13512 218 -------N--EVTFKSGKVEHYDMIIEGVGTHPN 242 (438)
T ss_pred -------C--EEEECCCCEEEeCEEEECcCCCcC
Confidence 2 455667888999999999998654
No 280
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.89 E-value=0.0001 Score=77.36 Aligned_cols=102 Identities=18% Similarity=0.337 Sum_probs=72.9
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (515)
.-+|+|||||++|+-+|..|++. |.+|+|+|+.+.+.
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~----g~~Vtli~~~~~il--------------------------------------- 216 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADF----GVEVTVVEAADRIL--------------------------------------- 216 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc----CCeEEEEEecCccC---------------------------------------
Confidence 35899999999999999999996 89999999887430
Q ss_pred ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (515)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~ 214 (515)
+. .-..+...+.+.+++.| ++++.+++|++++. ++
T Consensus 217 --~~------------------------------~~~~~~~~l~~~l~~~g-I~i~~~~~v~~i~~---------~~--- 251 (472)
T PRK05976 217 --PT------------------------------EDAELSKEVARLLKKLG-VRVVTGAKVLGLTL---------KK--- 251 (472)
T ss_pred --Cc------------------------------CCHHHHHHHHHHHHhcC-CEEEeCcEEEEEEE---------ec---
Confidence 00 00123345566677777 99999999999963 00
Q ss_pred cccccccCCeeEEEcCCCc--EEEeeEEEEecCCCchh
Q 010200 215 ATTLFTKGHLAKLDLSDGT--SLYAKLVVGADGGKSRV 250 (515)
Q Consensus 215 ~~~~~~~~~~~~v~~~~g~--~~~ad~vV~AdG~~S~v 250 (515)
.+....+.+.+|+ ++.+|.||.|.|.....
T Consensus 252 ------~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 283 (472)
T PRK05976 252 ------DGGVLIVAEHNGEEKTLEADKVLVSVGRRPNT 283 (472)
T ss_pred ------CCCEEEEEEeCCceEEEEeCEEEEeeCCccCC
Confidence 1122233445563 69999999999987654
No 281
>PRK06370 mercuric reductase; Validated
Probab=97.88 E-value=0.00011 Score=76.86 Aligned_cols=100 Identities=14% Similarity=0.245 Sum_probs=72.2
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (515)
.-+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+. ...
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~----G~~Vtli~~~~~~l---------------~~~--------------------- 210 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRF----GSEVTVIERGPRLL---------------PRE--------------------- 210 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc----CCeEEEEEcCCCCC---------------ccc---------------------
Confidence 35899999999999999999996 89999999877430 000
Q ss_pred ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (515)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~ 214 (515)
-.++...+.+.+++.| ++++++++|.+++.
T Consensus 211 -----------------------------------~~~~~~~l~~~l~~~G-V~i~~~~~V~~i~~-------------- 240 (463)
T PRK06370 211 -----------------------------------DEDVAAAVREILEREG-IDVRLNAECIRVER-------------- 240 (463)
T ss_pred -----------------------------------CHHHHHHHHHHHHhCC-CEEEeCCEEEEEEE--------------
Confidence 0123345566666777 99999999999975
Q ss_pred cccccccCCeeE--EEcCC-CcEEEeeEEEEecCCCchh
Q 010200 215 ATTLFTKGHLAK--LDLSD-GTSLYAKLVVGADGGKSRV 250 (515)
Q Consensus 215 ~~~~~~~~~~~~--v~~~~-g~~~~ad~vV~AdG~~S~v 250 (515)
.+..+. +...+ +.++.+|.||.|.|.....
T Consensus 241 ------~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 241 ------DGDGIAVGLDCNGGAPEITGSHILVAVGRVPNT 273 (463)
T ss_pred ------cCCEEEEEEEeCCCceEEEeCEEEECcCCCcCC
Confidence 222233 33333 4579999999999976554
No 282
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.87 E-value=2e-05 Score=81.81 Aligned_cols=40 Identities=30% Similarity=0.374 Sum_probs=34.3
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
....+|+||||||||+.+|..|++.. +|++|+|||+.+.+
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~--~g~~Vtv~E~~p~p 63 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAH--DGARVDIIERLPTP 63 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhC--CCCeEEEEecCCCC
Confidence 34578999999999999999998521 39999999999977
No 283
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.87 E-value=9.1e-05 Score=82.46 Aligned_cols=102 Identities=18% Similarity=0.258 Sum_probs=76.3
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (515)
-.++|||||+.|+-+|..|++. |.+|+|+|+.+.+. +. .+.
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~----G~~VtvVe~~~~ll-------------------~~------------~ld---- 186 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNL----GVETHVIEFAPMLM-------------------AE------------QLD---- 186 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHc----CCeEEEEeccccch-------------------hh------------hcC----
Confidence 4699999999999999999996 89999999876430 00 000
Q ss_pred cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~ 215 (515)
......+.+.+++.| ++++.+++++++.. +
T Consensus 187 -----------------------------------~~~~~~l~~~L~~~G-V~v~~~~~v~~I~~-----------~--- 216 (847)
T PRK14989 187 -----------------------------------QMGGEQLRRKIESMG-VRVHTSKNTLEIVQ-----------E--- 216 (847)
T ss_pred -----------------------------------HHHHHHHHHHHHHCC-CEEEcCCeEEEEEe-----------c---
Confidence 122355667777778 99999999999964 0
Q ss_pred ccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200 216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 250 (515)
Q Consensus 216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v 250 (515)
.......+.+.+|+++.+|+||.|.|.....
T Consensus 217 ----~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~ 247 (847)
T PRK14989 217 ----GVEARKTMRFADGSELEVDFIVFSTGIRPQD 247 (847)
T ss_pred ----CCCceEEEEECCCCEEEcCEEEECCCcccCc
Confidence 0123456788899999999999999986553
No 284
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.83 E-value=0.00013 Score=76.34 Aligned_cols=100 Identities=18% Similarity=0.267 Sum_probs=72.1
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (515)
.-+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+. + .+
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~----G~~Vtlie~~~~il----------~-----~~--------------------- 213 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRL----GAQVTVVEYLDRIC----------P-----GT--------------------- 213 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc----CCeEEEEeCCCCCC----------C-----CC---------------------
Confidence 45799999999999999999996 89999999876430 0 00
Q ss_pred ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (515)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~ 214 (515)
-.++...+.+.+++.| ++++.+++|++++.
T Consensus 214 -----------------------------------d~~~~~~l~~~l~~~g-V~i~~~~~V~~i~~-------------- 243 (466)
T PRK06115 214 -----------------------------------DTETAKTLQKALTKQG-MKFKLGSKVTGATA-------------- 243 (466)
T ss_pred -----------------------------------CHHHHHHHHHHHHhcC-CEEEECcEEEEEEE--------------
Confidence 0123345666667777 99999999999975
Q ss_pred cccccccCCeeEEEcC---C--CcEEEeeEEEEecCCCchh
Q 010200 215 ATTLFTKGHLAKLDLS---D--GTSLYAKLVVGADGGKSRV 250 (515)
Q Consensus 215 ~~~~~~~~~~~~v~~~---~--g~~~~ad~vV~AdG~~S~v 250 (515)
.++.+.+.+. + ++++.+|.||.|.|.....
T Consensus 244 ------~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~ 278 (466)
T PRK06115 244 ------GADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYT 278 (466)
T ss_pred ------cCCeEEEEEEEcCCCceeEEEeCEEEEccCCcccc
Confidence 2233444332 2 3479999999999987554
No 285
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.83 E-value=9.7e-05 Score=74.21 Aligned_cols=38 Identities=21% Similarity=0.427 Sum_probs=33.1
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
..+|||||||.+|+.+|..|.+.+ . +.+|+++|++...
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~-~-~~~itLVd~~~~h 40 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL-P-DVEITLVDRRDYH 40 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC-C-CCcEEEEeCCCcc
Confidence 457999999999999999999973 2 6899999999854
No 286
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.83 E-value=3.7e-05 Score=83.58 Aligned_cols=37 Identities=32% Similarity=0.511 Sum_probs=34.1
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
...+|+||||||+||++|..|++. |++|+|||+.+.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~----G~~Vtv~e~~~~~ 345 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARA----GVQVDVFDRHPEI 345 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHc----CCcEEEEeCCCCC
Confidence 467899999999999999999996 9999999999866
No 287
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.81 E-value=0.00055 Score=69.62 Aligned_cols=41 Identities=20% Similarity=0.232 Sum_probs=35.2
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK 96 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~ 96 (515)
.++=|||+|+|+|++|..|-|-+-.+|-+|+|||+.+.++.
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GG 43 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGG 43 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCC
Confidence 46789999999999999998865457889999999987753
No 288
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.81 E-value=0.00019 Score=74.76 Aligned_cols=98 Identities=12% Similarity=0.260 Sum_probs=73.9
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (515)
-+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+.
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~----g~~Vtli~~~~~~l---------------------------------------- 194 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANF----GSKVTILEAASLFL---------------------------------------- 194 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHC----CCeEEEEecCCCCC----------------------------------------
Confidence 4899999999999999999996 89999999876430
Q ss_pred cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~ 215 (515)
+. . -..+...+.+.+++.| ++++++++|++++.
T Consensus 195 -~~-----------------------------~-~~~~~~~l~~~l~~~g-V~v~~~~~v~~i~~--------------- 227 (441)
T PRK08010 195 -PR-----------------------------E-DRDIADNIATILRDQG-VDIILNAHVERISH--------------- 227 (441)
T ss_pred -CC-----------------------------c-CHHHHHHHHHHHHhCC-CEEEeCCEEEEEEE---------------
Confidence 00 0 0123345666777777 99999999999975
Q ss_pred ccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200 216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 250 (515)
Q Consensus 216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v 250 (515)
++..+.+..+++ ++.+|.||.|.|.....
T Consensus 228 -----~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 228 -----HENQVQVHSEHA-QLAVDALLIASGRQPAT 256 (441)
T ss_pred -----cCCEEEEEEcCC-eEEeCEEEEeecCCcCC
Confidence 224466666555 48999999999987654
No 289
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.80 E-value=0.00019 Score=74.45 Aligned_cols=97 Identities=18% Similarity=0.275 Sum_probs=72.6
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (515)
-+|+|||||++|+-+|..|++. |.+|+++++.+.+. . .
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~----g~~Vtli~~~~~~~------------------~-----------------~--- 175 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRER----GKNVTLIHRSERIL------------------N-----------------K--- 175 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhC----CCcEEEEECCcccC------------------c-----------------c---
Confidence 5799999999999999999996 89999999876330 0 0
Q ss_pred cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~ 215 (515)
. . ...+...+.+.+++.| ++++++++|.++..
T Consensus 176 -~------------------------------~-~~~~~~~~~~~l~~~g-V~v~~~~~v~~i~~--------------- 207 (427)
T TIGR03385 176 -L------------------------------F-DEEMNQIVEEELKKHE-INLRLNEEVDSIEG--------------- 207 (427)
T ss_pred -c------------------------------c-CHHHHHHHHHHHHHcC-CEEEeCCEEEEEec---------------
Confidence 0 0 0123455666677777 99999999999964
Q ss_pred ccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200 216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR 249 (515)
Q Consensus 216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~ 249 (515)
++. + +.+.+|+++.+|.||.|.|....
T Consensus 208 -----~~~-~-v~~~~g~~i~~D~vi~a~G~~p~ 234 (427)
T TIGR03385 208 -----EER-V-KVFTSGGVYQADMVILATGIKPN 234 (427)
T ss_pred -----CCC-E-EEEcCCCEEEeCEEEECCCccCC
Confidence 112 2 45567888999999999998754
No 290
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.78 E-value=5.6e-05 Score=79.39 Aligned_cols=37 Identities=30% Similarity=0.371 Sum_probs=33.6
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
...+|+||||||+|+++|..|++. |++|+|||+.+.+
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~----g~~V~v~e~~~~~ 178 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRA----GHTVTVFEREDRC 178 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHc----CCeEEEEecCCCC
Confidence 347999999999999999999996 9999999998865
No 291
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.76 E-value=2.6e-05 Score=82.40 Aligned_cols=37 Identities=27% Similarity=0.494 Sum_probs=34.2
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK 96 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~ 96 (515)
.||||||||++||++|..|++. |++|+|+|++..++.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~----G~~v~vlE~~~~~GG 38 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKR----GYRVTLLEQHAQPGG 38 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHC----CCeEEEEecCCCCCC
Confidence 4899999999999999999996 999999999998853
No 292
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.75 E-value=9.1e-05 Score=72.96 Aligned_cols=77 Identities=25% Similarity=0.390 Sum_probs=49.1
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCC--------CCCCCCCCcEEE-eCHhHHHHHHHc
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFI--------KKEDPPDPRVST-VTPATISFFKEI 124 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~--------~~~~~~~~~~~~-l~~~~~~~l~~l 124 (515)
...+|+|||||++||++|+.|++.+ +...|+|||+.++.+..... .-+++...+... ...+.+.++.++
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~--p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dL 87 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLG--PDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDL 87 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcC--CCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHc
Confidence 3578999999999999999999973 23446779999877432111 111111111111 122467788899
Q ss_pred CCchhhhh
Q 010200 125 GAWQYVQQ 132 (515)
Q Consensus 125 gl~~~~~~ 132 (515)
|+.+++..
T Consensus 88 Gl~~e~~~ 95 (491)
T KOG1276|consen 88 GLEDELQP 95 (491)
T ss_pred Cccceeee
Confidence 99776655
No 293
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.74 E-value=0.00031 Score=73.21 Aligned_cols=98 Identities=17% Similarity=0.292 Sum_probs=70.7
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (515)
-+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+. ..+.
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~----G~~Vtli~~~~~ll---------------~~~d--------------------- 209 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSAL----GTRVTIVNRSTKLL---------------RHLD--------------------- 209 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhC----CCcEEEEEccCccc---------------cccC---------------------
Confidence 5799999999999999999996 89999999876430 0000
Q ss_pred cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~ 215 (515)
.++...+.+.. +.+ ++++.+++|++++.
T Consensus 210 -----------------------------------~~~~~~l~~~~-~~g-I~i~~~~~V~~i~~--------------- 237 (452)
T TIGR03452 210 -----------------------------------EDISDRFTEIA-KKK-WDIRLGRNVTAVEQ--------------- 237 (452)
T ss_pred -----------------------------------HHHHHHHHHHH-hcC-CEEEeCCEEEEEEE---------------
Confidence 01112222222 335 89999999999975
Q ss_pred ccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200 216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 250 (515)
Q Consensus 216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v 250 (515)
.+..+.+.+.+|+++.+|.||.|.|.....
T Consensus 238 -----~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~ 267 (452)
T TIGR03452 238 -----DGDGVTLTLDDGSTVTADVLLVATGRVPNG 267 (452)
T ss_pred -----cCCeEEEEEcCCCEEEcCEEEEeeccCcCC
Confidence 223467777788889999999999976543
No 294
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.74 E-value=0.00033 Score=73.53 Aligned_cols=104 Identities=16% Similarity=0.221 Sum_probs=74.4
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (515)
.-+|+|||||+.|+-+|..++... ..|.+|+|+|+.+.+. -.+
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~-~~G~~Vtli~~~~~il---------------~~~--------------------- 229 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYK-PRGGKVTLCYRNNMIL---------------RGF--------------------- 229 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhc-cCCCeEEEEecCCccc---------------ccc---------------------
Confidence 357999999999999997664320 0288999999887430 000
Q ss_pred ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (515)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~ 214 (515)
-.++.+.+.+.+++.| +++++++++++++.
T Consensus 230 -----------------------------------d~~~~~~l~~~L~~~G-I~i~~~~~v~~i~~-------------- 259 (486)
T TIGR01423 230 -----------------------------------DSTLRKELTKQLRANG-INIMTNENPAKVTL-------------- 259 (486)
T ss_pred -----------------------------------CHHHHHHHHHHHHHcC-CEEEcCCEEEEEEE--------------
Confidence 0234456667777777 99999999999975
Q ss_pred cccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200 215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 250 (515)
Q Consensus 215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v 250 (515)
+.+....+.+.+|+++.+|.||.|.|.....
T Consensus 260 -----~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~ 290 (486)
T TIGR01423 260 -----NADGSKHVTFESGKTLDVDVVMMAIGRVPRT 290 (486)
T ss_pred -----cCCceEEEEEcCCCEEEcCEEEEeeCCCcCc
Confidence 0112355666778889999999999987665
No 295
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.74 E-value=0.00028 Score=74.50 Aligned_cols=98 Identities=17% Similarity=0.195 Sum_probs=73.7
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (515)
-+|+|||||+.|+-+|..|++. |.+|+|+++..... .+
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~----G~~Vtli~~~~~l~----------------~~---------------------- 220 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNEL----GFDVTVAVRSIPLR----------------GF---------------------- 220 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHc----CCcEEEEEcCcccc----------------cC----------------------
Confidence 3799999999999999999996 89999998632110 00
Q ss_pred cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~ 215 (515)
-.++.+.+.+.+++.| ++++.++++.+++.
T Consensus 221 ----------------------------------d~~~~~~l~~~l~~~G-V~i~~~~~v~~v~~--------------- 250 (499)
T PTZ00052 221 ----------------------------------DRQCSEKVVEYMKEQG-TLFLEGVVPINIEK--------------- 250 (499)
T ss_pred ----------------------------------CHHHHHHHHHHHHHcC-CEEEcCCeEEEEEE---------------
Confidence 0113345666677777 99999999999865
Q ss_pred ccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200 216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 250 (515)
Q Consensus 216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v 250 (515)
....+.+.+.+|+++.+|.||.|.|.....
T Consensus 251 -----~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~ 280 (499)
T PTZ00052 251 -----MDDKIKVLFSDGTTELFDTVLYATGRKPDI 280 (499)
T ss_pred -----cCCeEEEEECCCCEEEcCEEEEeeCCCCCc
Confidence 223456777788889999999999987665
No 296
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.73 E-value=3.6e-05 Score=85.95 Aligned_cols=37 Identities=24% Similarity=0.361 Sum_probs=34.0
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
...+|+|||||||||++|+.|++. |++|+|||+.+.+
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~----G~~VTV~Ek~~~l 572 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARA----GHPVTVFEKKEKP 572 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC----CCeEEEEeccccc
Confidence 457999999999999999999996 9999999998866
No 297
>PRK14694 putative mercuric reductase; Provisional
Probab=97.72 E-value=0.00034 Score=73.39 Aligned_cols=97 Identities=16% Similarity=0.292 Sum_probs=71.8
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (515)
-+|+|||||++|+-+|..|++. |.+|+|+++...+.
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~----g~~Vtlv~~~~~l~---------------------------------------- 214 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARL----GSRVTVLARSRVLS---------------------------------------- 214 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHc----CCeEEEEECCCCCC----------------------------------------
Confidence 5799999999999999999996 89999998642110
Q ss_pred cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~ 215 (515)
. ...++...+.+.+++.| ++++.++++.+++.
T Consensus 215 -~-------------------------------~~~~~~~~l~~~l~~~G-I~v~~~~~v~~i~~--------------- 246 (468)
T PRK14694 215 -Q-------------------------------EDPAVGEAIEAAFRREG-IEVLKQTQASEVDY--------------- 246 (468)
T ss_pred -C-------------------------------CCHHHHHHHHHHHHhCC-CEEEeCCEEEEEEE---------------
Confidence 0 00123345666677777 99999999999965
Q ss_pred ccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200 216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 250 (515)
Q Consensus 216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v 250 (515)
++..+.+.+.++ ++.+|.||.|.|.....
T Consensus 247 -----~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 247 -----NGREFILETNAG-TLRAEQLLVATGRTPNT 275 (468)
T ss_pred -----cCCEEEEEECCC-EEEeCEEEEccCCCCCc
Confidence 223455655444 69999999999987765
No 298
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.71 E-value=3.7e-05 Score=77.32 Aligned_cols=37 Identities=30% Similarity=0.616 Sum_probs=33.5
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK 96 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~ 96 (515)
+||+|||||++|+++|..|++. |.+|+|+|++...+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~----G~~V~viEk~~~iGG 38 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQL----NKRVLVVEKRNHIGG 38 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhC----CCeEEEEecCCCCCC
Confidence 6999999999999999999985 899999999876643
No 299
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.70 E-value=0.0003 Score=72.80 Aligned_cols=51 Identities=16% Similarity=0.097 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCc
Q 010200 173 LHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKS 248 (515)
Q Consensus 173 l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S 248 (515)
+.+.+.+.+++.| ++++.+++|+++.. + .+.+++|+++.+|+||.|.|...
T Consensus 230 ~~~~~~~~L~~~g-V~v~~~~~v~~v~~----------------------~--~v~~~~g~~i~~d~vi~~~G~~~ 280 (424)
T PTZ00318 230 LRKYGQRRLRRLG-VDIRTKTAVKEVLD----------------------K--EVVLKDGEVIPTGLVVWSTGVGP 280 (424)
T ss_pred HHHHHHHHHHHCC-CEEEeCCeEEEEeC----------------------C--EEEECCCCEEEccEEEEccCCCC
Confidence 4455667777777 99999999999853 2 35567888999999999999644
No 300
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.68 E-value=0.00034 Score=71.94 Aligned_cols=100 Identities=22% Similarity=0.314 Sum_probs=77.6
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (515)
..+|+|||||++|+.+|..|++. |++|+++|+.+.+... +.
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~----G~~v~l~e~~~~~~~~---------------~~-------------------- 176 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKR----GKKVTLIEAADRLGGQ---------------LL-------------------- 176 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHc----CCeEEEEEcccccchh---------------hh--------------------
Confidence 46899999999999999999996 9999999999866100 00
Q ss_pred ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (515)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~ 214 (515)
. ..+...+.+.+++.| ++++.+.++.+++.
T Consensus 177 ----------------------------------~-~~~~~~~~~~l~~~g-i~~~~~~~~~~i~~-------------- 206 (415)
T COG0446 177 ----------------------------------D-PEVAEELAELLEKYG-VELLLGTKVVGVEG-------------- 206 (415)
T ss_pred ----------------------------------h-HHHHHHHHHHHHHCC-cEEEeCCceEEEEc--------------
Confidence 0 234466777788888 99999999999975
Q ss_pred cccccccCCeeE---EEcCCCcEEEeeEEEEecCCCch
Q 010200 215 ATTLFTKGHLAK---LDLSDGTSLYAKLVVGADGGKSR 249 (515)
Q Consensus 215 ~~~~~~~~~~~~---v~~~~g~~~~ad~vV~AdG~~S~ 249 (515)
...... +...++..+.+|+++.+.|....
T Consensus 207 ------~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 207 ------KGNTLVVERVVGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred ------ccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence 222222 56678888999999999998764
No 301
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.68 E-value=4.3e-05 Score=72.61 Aligned_cols=36 Identities=28% Similarity=0.602 Sum_probs=33.0
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
++||+|||||+||+++|+.|+++ |.++.|+-++...
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~----Gk~c~iv~~gQsA 37 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQA----GKRCAIVNRGQSA 37 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhc----CCcEEEEeCChhh
Confidence 68999999999999999999997 9999999887654
No 302
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.68 E-value=0.00018 Score=72.33 Aligned_cols=58 Identities=19% Similarity=0.158 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCc-EEEeeEEEEecCCC-c
Q 010200 171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT-SLYAKLVVGADGGK-S 248 (515)
Q Consensus 171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~ad~vV~AdG~~-S 248 (515)
.++..+..+.++++| |+|+.++.|++++. +.+++ .+|. ++.++.+|-|.|.. |
T Consensus 209 ~~l~~~a~~~L~~~G-V~v~l~~~Vt~v~~----------------------~~v~~--~~g~~~I~~~tvvWaaGv~a~ 263 (405)
T COG1252 209 PKLSKYAERALEKLG-VEVLLGTPVTEVTP----------------------DGVTL--KDGEEEIPADTVVWAAGVRAS 263 (405)
T ss_pred HHHHHHHHHHHHHCC-CEEEcCCceEEECC----------------------CcEEE--ccCCeeEecCEEEEcCCCcCC
Confidence 345566777788888 99999999999964 44554 4555 59999999999975 3
Q ss_pred hhhhh
Q 010200 249 RVREL 253 (515)
Q Consensus 249 ~vr~~ 253 (515)
++-+.
T Consensus 264 ~~~~~ 268 (405)
T COG1252 264 PLLKD 268 (405)
T ss_pred hhhhh
Confidence 44444
No 303
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.68 E-value=0.00036 Score=72.76 Aligned_cols=98 Identities=14% Similarity=0.216 Sum_probs=71.5
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (515)
.+|+|||||++|+-+|..|++. |.+|+++++.+.+. +.
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~----g~~Vtli~~~~~~l-------------------~~------------------- 187 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHL----GKNVRIIQLEDRIL-------------------PD------------------- 187 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhc----CCcEEEEeCCcccC-------------------ch-------------------
Confidence 5799999999999999999996 89999998766330 00
Q ss_pred cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~ 215 (515)
. . ...+.+.+.+.+++.| ++++++++|+++..
T Consensus 188 -----------------~--------------~-~~~~~~~l~~~l~~~g-I~v~~~~~v~~i~~--------------- 219 (444)
T PRK09564 188 -----------------S--------------F-DKEITDVMEEELRENG-VELHLNEFVKSLIG--------------- 219 (444)
T ss_pred -----------------h--------------c-CHHHHHHHHHHHHHCC-CEEEcCCEEEEEec---------------
Confidence 0 0 0234456777777777 99999999999953
Q ss_pred ccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200 216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR 249 (515)
Q Consensus 216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~ 249 (515)
++....+..+ +.++.+|.||.|.|....
T Consensus 220 -----~~~~~~v~~~-~~~i~~d~vi~a~G~~p~ 247 (444)
T PRK09564 220 -----EDKVEGVVTD-KGEYEADVVIVATGVKPN 247 (444)
T ss_pred -----CCcEEEEEeC-CCEEEcCEEEECcCCCcC
Confidence 2222334444 447999999999998653
No 304
>PRK14727 putative mercuric reductase; Provisional
Probab=97.65 E-value=0.00048 Score=72.45 Aligned_cols=97 Identities=16% Similarity=0.247 Sum_probs=72.7
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (515)
-+|+|||||+.|+-+|..|++. |.+|+|+++..... .+.
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~----G~~Vtlv~~~~~l~----------------~~d--------------------- 227 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARL----GSRVTILARSTLLF----------------RED--------------------- 227 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHc----CCEEEEEEcCCCCC----------------cch---------------------
Confidence 5799999999999999999986 89999998743110 000
Q ss_pred cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~ 215 (515)
..+...+.+.+++.| ++++++++|++++.
T Consensus 228 -----------------------------------~~~~~~l~~~L~~~G-V~i~~~~~V~~i~~--------------- 256 (479)
T PRK14727 228 -----------------------------------PLLGETLTACFEKEG-IEVLNNTQASLVEH--------------- 256 (479)
T ss_pred -----------------------------------HHHHHHHHHHHHhCC-CEEEcCcEEEEEEE---------------
Confidence 123345666677777 99999999999975
Q ss_pred ccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200 216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 250 (515)
Q Consensus 216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v 250 (515)
.+..+.+...++ ++.+|.||.|.|.....
T Consensus 257 -----~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~ 285 (479)
T PRK14727 257 -----DDNGFVLTTGHG-ELRAEKLLISTGRHANT 285 (479)
T ss_pred -----eCCEEEEEEcCC-eEEeCEEEEccCCCCCc
Confidence 224466666555 58999999999998765
No 305
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.64 E-value=0.00027 Score=69.48 Aligned_cols=157 Identities=11% Similarity=0.083 Sum_probs=94.6
Q ss_pred CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHH--HHHHHcCCchh
Q 010200 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATI--SFFKEIGAWQY 129 (515)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~l~~lgl~~~ 129 (515)
++..+|+|.||-||.-|++|+.|..+ .++++..+||.+...-.. |..+....+ .++++|-
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~---~~~~~lFLerkp~F~WHp-----------GmllegstlQv~FlkDLV---- 63 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEH---SGLKSLFLERKPDFSWHP-----------GMLLEGSTLQVPFLKDLV---- 63 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccc---cCcceEEEecCCCCCcCC-----------CcccCCccccccchhhhc----
Confidence 45679999999999999999999998 368999999999874221 222222211 2333331
Q ss_pred hhhhhccccceEEEEe---CCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCC
Q 010200 130 VQQHRHAYFDKMQVWD---YTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSS 206 (515)
Q Consensus 130 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~ 206 (515)
.... +-....+.+ ..+. ...|- ....+.+.|.++.+++.=.+...+ .+++|.+|++|..
T Consensus 64 --Tl~~-PTs~ySFLNYL~~h~R-Ly~Fl------~~e~f~i~R~Ey~dY~~Waa~~l~--~~rfg~~V~~i~~------ 125 (436)
T COG3486 64 --TLVD-PTSPYSFLNYLHEHGR-LYEFL------NYETFHIPRREYNDYCQWAASQLP--SLRFGEEVTDISS------ 125 (436)
T ss_pred --cccC-CCCchHHHHHHHHcch-Hhhhh------hhhcccccHHHHHHHHHHHHhhCC--ccccCCeeccccc------
Confidence 0000 111111100 0000 00000 111246788888888887777664 6899999998732
Q ss_pred cccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhc
Q 010200 207 ISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELA 254 (515)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l 254 (515)
.+.| ......+...++..+.|+-||...|..-.+-.++
T Consensus 126 ----~~~d------~~~~~~~~t~~~~~y~ar~lVlg~G~~P~IP~~f 163 (436)
T COG3486 126 ----LDGD------AVVRLFVVTANGTVYRARNLVLGVGTQPYIPPCF 163 (436)
T ss_pred ----cCCc------ceeEEEEEcCCCcEEEeeeEEEccCCCcCCChHH
Confidence 1111 1122236667777899999999999877765554
No 306
>PTZ00058 glutathione reductase; Provisional
Probab=97.63 E-value=0.00043 Score=73.61 Aligned_cols=101 Identities=15% Similarity=0.182 Sum_probs=72.8
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (515)
.-+|+|||||..|+-+|..|++. |.+|+|+|+.+.+. -.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~----G~~Vtli~~~~~il---------------~~---------------------- 275 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRL----GAESYIFARGNRLL---------------RK---------------------- 275 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc----CCcEEEEEeccccc---------------cc----------------------
Confidence 45799999999999999999996 89999999876430 00
Q ss_pred ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (515)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~ 214 (515)
++ .++.+.+.+.+++.| ++++++++|.+++.
T Consensus 276 ---------------------------------~d-~~i~~~l~~~L~~~G-V~i~~~~~V~~I~~-------------- 306 (561)
T PTZ00058 276 ---------------------------------FD-ETIINELENDMKKNN-INIITHANVEEIEK-------------- 306 (561)
T ss_pred ---------------------------------CC-HHHHHHHHHHHHHCC-CEEEeCCEEEEEEe--------------
Confidence 00 123344566667777 99999999999965
Q ss_pred cccccccCCeeEEEcCCC-cEEEeeEEEEecCCCchh
Q 010200 215 ATTLFTKGHLAKLDLSDG-TSLYAKLVVGADGGKSRV 250 (515)
Q Consensus 215 ~~~~~~~~~~~~v~~~~g-~~~~ad~vV~AdG~~S~v 250 (515)
+....+.+.+.++ +++.+|.||.|.|....+
T Consensus 307 -----~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~ 338 (561)
T PTZ00058 307 -----VKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNT 338 (561)
T ss_pred -----cCCCcEEEEECCCCEEEECCEEEECcCCCCCc
Confidence 0112355554444 479999999999976543
No 307
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.63 E-value=0.00014 Score=74.14 Aligned_cols=62 Identities=21% Similarity=0.202 Sum_probs=53.4
Q ss_pred EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecC
Q 010200 166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADG 245 (515)
Q Consensus 166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG 245 (515)
..++...+...|.+.+.+ | ++++++++|++++. .+..+.+.+.+|.++.||.||.|+|
T Consensus 130 g~idp~~~~~~l~~~~~~-G-~~i~~~~~V~~i~~--------------------~~~~~~v~t~~g~~~~a~~vV~a~G 187 (381)
T TIGR03197 130 GWLSPPQLCRALLAHAGI-R-LTLHFNTEITSLER--------------------DGEGWQLLDANGEVIAASVVVLANG 187 (381)
T ss_pred cccChHHHHHHHHhccCC-C-cEEEeCCEEEEEEE--------------------cCCeEEEEeCCCCEEEcCEEEEcCC
Confidence 356789999999999988 7 99999999999976 3345788888888799999999999
Q ss_pred CCch
Q 010200 246 GKSR 249 (515)
Q Consensus 246 ~~S~ 249 (515)
.++.
T Consensus 188 ~~~~ 191 (381)
T TIGR03197 188 AQAG 191 (381)
T ss_pred cccc
Confidence 9985
No 308
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.62 E-value=5.5e-05 Score=74.27 Aligned_cols=37 Identities=27% Similarity=0.510 Sum_probs=31.1
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~ 95 (515)
||+||||+|++|+.+|..|++. .+.+|+|+|+++...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~---~~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEA---GNKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTS---TTS-EEEEESSBSCT
T ss_pred CCEEEECcCHHHHHHHHHHhhC---CCCcEEEEEccccCc
Confidence 7999999999999999999997 247999999998754
No 309
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.62 E-value=6.9e-05 Score=76.89 Aligned_cols=38 Identities=18% Similarity=0.366 Sum_probs=32.9
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
...+|+||||||||+.+|..|++. .|++|+||||.+.+
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~---~g~~VtlfEk~p~p 75 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKH---ERVKVDIFEKLPNP 75 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHh---cCCeEEEEecCCCC
Confidence 456899999999999999976543 39999999999988
No 310
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.61 E-value=0.00047 Score=72.28 Aligned_cols=35 Identities=17% Similarity=0.446 Sum_probs=31.6
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
-+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~----G~~Vtlv~~~~~i 209 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRL----GSEVDVVEMFDQV 209 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHc----CCCEEEEecCCCC
Confidence 5799999999999999999996 8999999988743
No 311
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.61 E-value=0.0005 Score=72.22 Aligned_cols=98 Identities=17% Similarity=0.081 Sum_probs=70.9
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (515)
-+|+|||||+.|+-+|..|++. |.+|+|+++...+. .+
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~----G~~Vtli~~~~~l~----------------~~---------------------- 218 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGI----GLDVTVMVRSILLR----------------GF---------------------- 218 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHh----CCcEEEEEeccccc----------------cc----------------------
Confidence 4799999999999999999996 89999998632110 00
Q ss_pred cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~ 215 (515)
-.++.+.+.+.+++.| +++++++.+++++.
T Consensus 219 ----------------------------------d~~~~~~l~~~L~~~g-V~i~~~~~v~~v~~--------------- 248 (484)
T TIGR01438 219 ----------------------------------DQDCANKVGEHMEEHG-VKFKRQFVPIKVEQ--------------- 248 (484)
T ss_pred ----------------------------------CHHHHHHHHHHHHHcC-CEEEeCceEEEEEE---------------
Confidence 0123345666677777 99999999998865
Q ss_pred ccccccCCeeEEEcCCC---cEEEeeEEEEecCCCchh
Q 010200 216 TTLFTKGHLAKLDLSDG---TSLYAKLVVGADGGKSRV 250 (515)
Q Consensus 216 ~~~~~~~~~~~v~~~~g---~~~~ad~vV~AdG~~S~v 250 (515)
.+..+.+++.++ +++.+|.||.|.|.....
T Consensus 249 -----~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~ 281 (484)
T TIGR01438 249 -----IEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACT 281 (484)
T ss_pred -----cCCeEEEEEecCCcceEEEeCEEEEEecCCcCC
Confidence 223455665554 379999999999976543
No 312
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.60 E-value=6.4e-05 Score=75.02 Aligned_cols=37 Identities=35% Similarity=0.714 Sum_probs=34.5
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~ 95 (515)
.-+|+|||||+||+++|+.|++. |++|.++||.+..+
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~----G~~v~LVEKepsiG 160 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADM----GFKVYLVEKEPSIG 160 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHc----CCeEEEEecCCccc
Confidence 45799999999999999999997 99999999999885
No 313
>PRK13748 putative mercuric reductase; Provisional
Probab=97.56 E-value=0.00072 Score=72.71 Aligned_cols=97 Identities=16% Similarity=0.205 Sum_probs=71.6
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (515)
-+|+|||||+.|+-+|..|++. |.+|+|+++...+. ...
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~----g~~Vtli~~~~~l~----------------~~d--------------------- 309 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARL----GSKVTILARSTLFF----------------RED--------------------- 309 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHc----CCEEEEEecCcccc----------------ccC---------------------
Confidence 5799999999999999999996 89999999743210 000
Q ss_pred cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~ 215 (515)
.++...+.+.+++.| ++++.++++++++.
T Consensus 310 -----------------------------------~~~~~~l~~~l~~~g-I~i~~~~~v~~i~~--------------- 338 (561)
T PRK13748 310 -----------------------------------PAIGEAVTAAFRAEG-IEVLEHTQASQVAH--------------- 338 (561)
T ss_pred -----------------------------------HHHHHHHHHHHHHCC-CEEEcCCEEEEEEe---------------
Confidence 112244556666677 99999999999965
Q ss_pred ccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200 216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 250 (515)
Q Consensus 216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v 250 (515)
.+..+.+.+.++ ++.+|.||.|.|.....
T Consensus 339 -----~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 339 -----VDGEFVLTTGHG-ELRADKLLVATGRAPNT 367 (561)
T ss_pred -----cCCEEEEEecCC-eEEeCEEEEccCCCcCC
Confidence 223456666555 59999999999986654
No 314
>PLN02546 glutathione reductase
Probab=97.54 E-value=0.00079 Score=71.65 Aligned_cols=101 Identities=15% Similarity=0.135 Sum_probs=73.3
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (515)
.-+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+. -.+
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~----g~~Vtlv~~~~~il---------------~~~--------------------- 291 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGL----KSDVHVFIRQKKVL---------------RGF--------------------- 291 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhc----CCeEEEEEeccccc---------------ccc---------------------
Confidence 35899999999999999999986 89999999876430 000
Q ss_pred ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (515)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~ 214 (515)
-..+...+.+.+++.| ++++.++++++++.
T Consensus 292 -----------------------------------d~~~~~~l~~~L~~~G-V~i~~~~~v~~i~~-------------- 321 (558)
T PLN02546 292 -----------------------------------DEEVRDFVAEQMSLRG-IEFHTEESPQAIIK-------------- 321 (558)
T ss_pred -----------------------------------CHHHHHHHHHHHHHCC-cEEEeCCEEEEEEE--------------
Confidence 0123355666677777 99999999999964
Q ss_pred cccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200 215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 250 (515)
Q Consensus 215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v 250 (515)
+.+..+.+...+++...+|.||.|.|.....
T Consensus 322 -----~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt 352 (558)
T PLN02546 322 -----SADGSLSLKTNKGTVEGFSHVMFATGRKPNT 352 (558)
T ss_pred -----cCCCEEEEEECCeEEEecCEEEEeeccccCC
Confidence 0123355655555545589999999987765
No 315
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.48 E-value=0.00013 Score=79.64 Aligned_cols=37 Identities=32% Similarity=0.531 Sum_probs=34.0
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
...+|+|||||||||++|..|++. |++|+|||+.+.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~----G~~V~V~E~~~~~ 362 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARN----GVAVTVYDRHPEI 362 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC----CCeEEEEecCCCC
Confidence 457999999999999999999996 9999999998766
No 316
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.48 E-value=0.00017 Score=75.74 Aligned_cols=36 Identities=31% Similarity=0.449 Sum_probs=33.9
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~ 95 (515)
|||+|||+||+|+++|..|++. |++|+|+|++...+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~----g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDA----GLKVAMVEIGAADS 36 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHC----CCeEEEEeccCccC
Confidence 6999999999999999999996 89999999999875
No 317
>PRK02106 choline dehydrogenase; Validated
Probab=97.47 E-value=0.00012 Score=78.52 Aligned_cols=39 Identities=26% Similarity=0.474 Sum_probs=34.5
Q ss_pred CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
+...+|+||||||++|+.+|..|++. +|++|+|||+++.
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~---~g~~VlvlEaG~~ 40 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSED---PDVSVLLLEAGGP 40 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhC---CCCeEEEecCCCc
Confidence 34569999999999999999999994 3999999999963
No 318
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.46 E-value=0.00015 Score=76.04 Aligned_cols=38 Identities=32% Similarity=0.397 Sum_probs=34.4
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
....+|+||||||+|+++|..|++. |++|+|||+.+.+
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~----G~~V~vie~~~~~ 178 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARA----GHKVTVFERADRI 178 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhC----CCcEEEEecCCCC
Confidence 3457999999999999999999996 9999999998866
No 319
>PLN02529 lysine-specific histone demethylase 1
Probab=97.45 E-value=0.00015 Score=78.85 Aligned_cols=41 Identities=27% Similarity=0.461 Sum_probs=36.4
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCC
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS 97 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~ 97 (515)
....+|+|||||++||++|..|+++ |++|+|+|++..++.+
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~----g~~v~v~E~~~~~GG~ 198 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSF----GFKVVVLEGRNRPGGR 198 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHc----CCcEEEEecCccCcCc
Confidence 3567999999999999999999996 9999999999877543
No 320
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.45 E-value=0.0004 Score=69.70 Aligned_cols=59 Identities=20% Similarity=0.175 Sum_probs=47.7
Q ss_pred EechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCC-cEEEeeEEEEecC
Q 010200 167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG-TSLYAKLVVGADG 245 (515)
Q Consensus 167 ~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~ad~vV~AdG 245 (515)
.-.-..+.++|.+++++.| |+|+++++|++++. ..+.+.+.++ .++.||.||.|+|
T Consensus 82 S~~A~sVv~~L~~~l~~~g-V~i~~~~~V~~i~~----------------------~~~~v~~~~~~~~~~a~~vIlAtG 138 (376)
T TIGR03862 82 EMKAAPLLRAWLKRLAEQG-VQFHTRHRWIGWQG----------------------GTLRFETPDGQSTIEADAVVLALG 138 (376)
T ss_pred CCCHHHHHHHHHHHHHHCC-CEEEeCCEEEEEeC----------------------CcEEEEECCCceEEecCEEEEcCC
Confidence 3456789999999999998 99999999999932 2355665433 4699999999999
Q ss_pred CCc
Q 010200 246 GKS 248 (515)
Q Consensus 246 ~~S 248 (515)
..|
T Consensus 139 G~s 141 (376)
T TIGR03862 139 GAS 141 (376)
T ss_pred Ccc
Confidence 976
No 321
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.44 E-value=0.0013 Score=68.97 Aligned_cols=36 Identities=25% Similarity=0.618 Sum_probs=32.1
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
.-+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~----g~~Vtli~~~~~~ 204 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRL----GVKVTVFERGDRI 204 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc----CCcEEEEecCCCc
Confidence 35799999999999999999996 8999999987744
No 322
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.44 E-value=0.0026 Score=67.56 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=52.5
Q ss_pred EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCee-EEEc---CCC--cEEEeeE
Q 010200 166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLA-KLDL---SDG--TSLYAKL 239 (515)
Q Consensus 166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~---~~g--~~~~ad~ 239 (515)
..++...+...|.+.+.+.| ++|+.+++|++++. .++.+ .|++ .+| .++.|+.
T Consensus 123 g~vdp~~l~~al~~~A~~~G-a~i~~~t~V~~i~~--------------------~~~~v~gv~v~~~~~g~~~~i~a~~ 181 (516)
T TIGR03377 123 GTVDPFRLVAANVLDAQEHG-ARIFTYTKVTGLIR--------------------EGGRVTGVKVEDHKTGEEERIEAQV 181 (516)
T ss_pred cEECHHHHHHHHHHHHHHcC-CEEEcCcEEEEEEE--------------------ECCEEEEEEEEEcCCCcEEEEEcCE
Confidence 35788999999999999998 99999999999976 22222 2333 234 2799999
Q ss_pred EEEecCCCch-hhhhcCC
Q 010200 240 VVGADGGKSR-VRELAGF 256 (515)
Q Consensus 240 vV~AdG~~S~-vr~~l~~ 256 (515)
||.|+|.|+. +.+.++.
T Consensus 182 VVnAaG~wa~~l~~~~g~ 199 (516)
T TIGR03377 182 VINAAGIWAGRIAEYAGL 199 (516)
T ss_pred EEECCCcchHHHHHhcCC
Confidence 9999999986 3444454
No 323
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.38 E-value=0.00017 Score=73.82 Aligned_cols=34 Identities=32% Similarity=0.610 Sum_probs=31.8
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
++||+|||||++|+++|+.|++. |.+|+|+|+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~----g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEA----GKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHC----CCcEEEEECCC
Confidence 58999999999999999999996 99999999875
No 324
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.31 E-value=0.0022 Score=69.43 Aligned_cols=35 Identities=20% Similarity=0.405 Sum_probs=31.6
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
-+|+|||||..|+-+|..|++. |.+|+|+|+.+.+
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~----G~eVTLIe~~~~l 347 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTAL----GSEVVSFEYSPQL 347 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhC----CCeEEEEeccCcc
Confidence 4799999999999999999996 8999999998744
No 325
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.30 E-value=0.00029 Score=67.03 Aligned_cols=36 Identities=28% Similarity=0.531 Sum_probs=33.9
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~ 95 (515)
+|++|||+|++|+.+|..|+++ |.+|.|+||++-.+
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~----gk~VLIvekR~HIG 37 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQL----GKRVLIVEKRNHIG 37 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHc----CCEEEEEeccccCC
Confidence 7999999999999999999997 99999999999875
No 326
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.25 E-value=0.00036 Score=76.06 Aligned_cols=37 Identities=30% Similarity=0.408 Sum_probs=33.9
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
...+|+||||||+||++|+.|++. |++|+|||+.+.+
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~----G~~Vtv~e~~~~~ 228 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRK----GHDVTIFDANEQA 228 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCCC
Confidence 457999999999999999999996 9999999998866
No 327
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=97.22 E-value=0.0019 Score=64.22 Aligned_cols=64 Identities=17% Similarity=0.245 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200 171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 250 (515)
Q Consensus 171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v 250 (515)
..+..++.+.+++.| .+|++...|.+|.. +.+..+.|..+||+++.++.||-=.+.|-..
T Consensus 264 Gavs~aia~~~~~~G-aeI~tka~Vq~Ill-------------------d~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf 323 (561)
T KOG4254|consen 264 GAVSFAIAEGAKRAG-AEIFTKATVQSILL-------------------DSGKAVGVRLADGTEVRSKIVVSNATPWDTF 323 (561)
T ss_pred hHHHHHHHHHHHhcc-ceeeehhhhhheec-------------------cCCeEEEEEecCCcEEEeeeeecCCchHHHH
Confidence 456688899999998 89999999999987 2346677889999999999999888877766
Q ss_pred hhhc
Q 010200 251 RELA 254 (515)
Q Consensus 251 r~~l 254 (515)
-+.+
T Consensus 324 ~kLl 327 (561)
T KOG4254|consen 324 EKLL 327 (561)
T ss_pred HHhC
Confidence 5555
No 328
>PRK10262 thioredoxin reductase; Provisional
Probab=97.21 E-value=0.0028 Score=62.92 Aligned_cols=34 Identities=29% Similarity=0.420 Sum_probs=30.7
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
..+|+|||+|..|+-+|..|++. |.+|+++++.+
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~----~~~Vtlv~~~~ 179 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNI----ASEVHLIHRRD 179 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhh----CCEEEEEEECC
Confidence 35899999999999999999996 89999999875
No 329
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.14 E-value=0.0031 Score=66.91 Aligned_cols=34 Identities=35% Similarity=0.529 Sum_probs=30.4
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
..+|+|||||+.|+-+|..|++. |.+|+|+|+.+
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~----g~~Vtli~~~~ 385 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGI----VRHVTVLEFAD 385 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhc----CcEEEEEEeCC
Confidence 35899999999999999999986 88999998765
No 330
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.13 E-value=0.0014 Score=65.42 Aligned_cols=144 Identities=17% Similarity=0.143 Sum_probs=73.9
Q ss_pred CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhh
Q 010200 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ 131 (515)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~ 131 (515)
......|+|||||.++.-++..|.+.+ +..+|+++=|++...... ........+.|..++.+..+.. +..
T Consensus 187 ~~~~~~V~VVGgGQSAAEi~~~L~~~~--~~~~V~~i~R~~~~~~~d------~s~f~ne~f~P~~v~~f~~l~~--~~R 256 (341)
T PF13434_consen 187 SLAGKRVAVVGGGQSAAEIFLDLLRRG--PEAKVTWISRSPGFFPMD------DSPFVNEIFSPEYVDYFYSLPD--EER 256 (341)
T ss_dssp ----EEEEEE-SSHHHHHHHHHHHHH---TTEEEEEEESSSS-EB----------CCHHGGGSHHHHHHHHTS-H--HHH
T ss_pred ccCCCeEEEECCcHhHHHHHHHHHhCC--CCcEEEEEECCCccCCCc------cccchhhhcCchhhhhhhcCCH--HHH
Confidence 445689999999999999999998862 236899998887652110 1111112455666665554432 111
Q ss_pred hhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHH---HHHH-HHHHhcCCCceEEcCCeeEEEEeCCCCCCc
Q 010200 132 QHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVL---HSSL-LSCMQNTEFQKTIYPSRLTSMALLPSSSSI 207 (515)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l---~~~L-~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~ 207 (515)
........ .. .. -.|+...+ .+.| .+.+...+.++++.+++|++++.
T Consensus 257 ~~~l~~~~------------------~~--ny--~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~------- 307 (341)
T PF13434_consen 257 RELLREQR------------------HT--NY--GGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQ------- 307 (341)
T ss_dssp HHHHHHTG------------------GG--TS--SEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEE-------
T ss_pred HHHHHHhH------------------hh--cC--CCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEE-------
Confidence 11110000 00 00 12332222 2222 23344444589999999999987
Q ss_pred ccCCCCCcccccccCCeeEEEcCC---C--cEEEeeEEEEecCC
Q 010200 208 SVDSTPSATTLFTKGHLAKLDLSD---G--TSLYAKLVVGADGG 246 (515)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~v~~~~---g--~~~~ad~vV~AdG~ 246 (515)
+..+.+.+.+.+ + .++.+|+||.|||.
T Consensus 308 ------------~~~~~~~l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 308 ------------DGDGGVRLTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp ------------ES-SSEEEEEEETTT--EEEEEESEEEE---E
T ss_pred ------------CCCCEEEEEEEECCCCCeEEEecCEEEEcCCc
Confidence 121367777765 2 37899999999995
No 331
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.12 E-value=0.00056 Score=66.49 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=32.8
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
..|+|||+||||+.+|.+|.+.. .+++|.|+|+.+.|
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~--~~~~Vdi~Ek~PvP 57 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRH--PNAHVDIFEKLPVP 57 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcC--CCCeeEeeecCCcc
Confidence 37999999999999999998842 37999999999987
No 332
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.09 E-value=0.0045 Score=60.58 Aligned_cols=34 Identities=29% Similarity=0.420 Sum_probs=30.3
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
..+|+|||+|++|+-+|..|++. +.+|+++++.+
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~----~~~V~~v~~~~ 174 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRI----AKKVTLVHRRD 174 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhh----cCEEEEEEeCc
Confidence 35899999999999999999985 88999998865
No 333
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.09 E-value=0.00058 Score=72.58 Aligned_cols=38 Identities=32% Similarity=0.530 Sum_probs=34.2
Q ss_pred CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
+..++|+||||+|.+|.++|..|+. +|++|+|+|++..
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~----~g~~VllLEaG~~ 41 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSD----AGLSVLVLEAGGP 41 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcC----CCCeEEEEeCCCC
Confidence 4567999999999999999999996 4999999999963
No 334
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.07 E-value=0.0007 Score=68.21 Aligned_cols=37 Identities=32% Similarity=0.452 Sum_probs=33.6
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
...+|+|||||++|+.+|..|++. |++|+|+|+.+.+
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~----g~~v~lie~~~~~ 53 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACL----GYEVHVYDKLPEP 53 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC----CCcEEEEeCCCCC
Confidence 346899999999999999999996 9999999998866
No 335
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.05 E-value=0.00055 Score=70.56 Aligned_cols=37 Identities=30% Similarity=0.388 Sum_probs=34.3
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~ 95 (515)
..+|+|||||||||++|..|+++ |++|+|+|+.+.++
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~----G~~Vtv~e~~~~~G 159 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRA----GHDVTVFERVALDG 159 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhC----CCeEEEeCCcCCCc
Confidence 37899999999999999999997 99999999999873
No 336
>PLN02785 Protein HOTHEAD
Probab=97.04 E-value=0.00076 Score=72.25 Aligned_cols=37 Identities=38% Similarity=0.664 Sum_probs=33.2
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
...||+||||||.||+.+|..|++ +.+|+|||++..+
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-----~~~VLllE~G~~~ 89 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-----NFSVLLLERGGVP 89 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-----CCcEEEEecCCCC
Confidence 456999999999999999999999 4899999999753
No 337
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.04 E-value=0.0052 Score=62.21 Aligned_cols=49 Identities=20% Similarity=0.182 Sum_probs=38.5
Q ss_pred HHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCc
Q 010200 175 SSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKS 248 (515)
Q Consensus 175 ~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S 248 (515)
..+.+.+++.| ++++.+++++++.. . .+.+.+|+++.+|.||.|.|...
T Consensus 195 ~~~~~~l~~~g-V~v~~~~~v~~i~~----------------------~--~v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 195 RLVLRLLARRG-IEVHEGAPVTRGPD----------------------G--ALILADGRTLPADAILWATGARA 243 (364)
T ss_pred HHHHHHHHHCC-CEEEeCCeeEEEcC----------------------C--eEEeCCCCEEecCEEEEccCCCh
Confidence 45566667777 99999999998843 2 45667888999999999999754
No 338
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.01 E-value=0.0019 Score=61.66 Aligned_cols=120 Identities=15% Similarity=0.220 Sum_probs=65.7
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHH---HHHHHcCCchh-h
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATI---SFFKEIGAWQY-V 130 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~l~~lgl~~~-~ 130 (515)
...|.|||||.||.-+|+.+++. |++|.++|=++.-.+... ....-...+..+++ ..-...|+... +
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~----Gv~V~L~EMRp~k~TpaH-----~td~fAELVCSNSlr~~~~~navGlLk~EM 73 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKR----GVPVILYEMRPVKGTPAH-----KTDNFAELVCSNSLRSDALTNAVGLLKAEM 73 (439)
T ss_pred CCceEEEcccccccHHHHHHHHc----CCcEEEEEcccccCCCcc-----cccchhhheeccccccchhhhhhHHHHHHH
Confidence 34699999999999999999995 999999998765322110 00000111111111 11111222111 1
Q ss_pred hhhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEE
Q 010200 131 QQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSM 198 (515)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i 198 (515)
...+. +-+...+ .. .. .--..+.++|..+-+.+-+.++..+.++|+.+ +|+++
T Consensus 74 R~lgS-----lii~~Ad---~~-----~V-PAGgALAVDR~~Fs~~vT~~l~~hpli~vire-Evt~i 126 (439)
T COG1206 74 RLLGS-----LIIEAAD---KH-----RV-PAGGALAVDRDGFSQAVTEKLENHPLIEVIRE-EVTEI 126 (439)
T ss_pred HHhhh-----HHhhhhh---hc-----cC-CCCceeeecHhHHHHHHHHHHhcCCCEEEEcc-ccccC
Confidence 11110 0000000 00 00 01123679999999999999998887877765 66655
No 339
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.00 E-value=0.00093 Score=71.78 Aligned_cols=37 Identities=38% Similarity=0.605 Sum_probs=33.8
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
...+|+||||||+||++|+.|++. |++|+|+|+.+.+
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~----G~~V~v~e~~~~~ 172 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRM----GHAVTIFEAGPKL 172 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC----CCeEEEEecCCCC
Confidence 456899999999999999999996 8999999999876
No 340
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.98 E-value=0.0076 Score=60.76 Aligned_cols=103 Identities=27% Similarity=0.327 Sum_probs=79.9
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (515)
.-.|+|||||..|+-+|..|.-. +++|+++++.+.+- ..+
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~----~~~VT~V~~e~~~~--------------------------------~~l---- 252 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSK----AKSVTVVFPEPWLL--------------------------------PRL---- 252 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhc----CceEEEEccCccch--------------------------------hhh----
Confidence 56799999999999999999884 89999999888550 000
Q ss_pred ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (515)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~ 214 (515)
--..+.+.+.+.+++.| ++++.++.+.+++. .+
T Consensus 253 ----------------------------------f~~~i~~~~~~y~e~kg-Vk~~~~t~~s~l~~-----------~~- 285 (478)
T KOG1336|consen 253 ----------------------------------FGPSIGQFYEDYYENKG-VKFYLGTVVSSLEG-----------NS- 285 (478)
T ss_pred ----------------------------------hhHHHHHHHHHHHHhcC-eEEEEecceeeccc-----------CC-
Confidence 00123455666677777 99999999999965 22
Q ss_pred cccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200 215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 250 (515)
Q Consensus 215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v 250 (515)
.++...|...+|+++.||+||...|+.+..
T Consensus 286 ------~Gev~~V~l~dg~~l~adlvv~GiG~~p~t 315 (478)
T KOG1336|consen 286 ------DGEVSEVKLKDGKTLEADLVVVGIGIKPNT 315 (478)
T ss_pred ------CCcEEEEEeccCCEeccCeEEEeecccccc
Confidence 247788999999999999999999986654
No 341
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.96 E-value=0.0017 Score=68.70 Aligned_cols=97 Identities=22% Similarity=0.384 Sum_probs=73.3
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhcc
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHA 136 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~ 136 (515)
.-+|||||.-||=+|..|.+. |.+|+|++=.+.+ ++ ..++..
T Consensus 147 ~avVIGGGLLGlEaA~~L~~~----Gm~~~Vvh~~~~l-----------------------Me--------rQLD~~--- 188 (793)
T COG1251 147 KAVVIGGGLLGLEAARGLKDL----GMEVTVVHIAPTL-----------------------ME--------RQLDRT--- 188 (793)
T ss_pred CcEEEccchhhhHHHHHHHhC----CCceEEEeecchH-----------------------HH--------HhhhhH---
Confidence 469999999999999999996 9999999755422 10 011111
Q ss_pred ccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcc
Q 010200 137 YFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSAT 216 (515)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~ 216 (515)
--..|...+++.| ++++.++...++..
T Consensus 189 ------------------------------------ag~lL~~~le~~G-i~~~l~~~t~ei~g---------------- 215 (793)
T COG1251 189 ------------------------------------AGRLLRRKLEDLG-IKVLLEKNTEEIVG---------------- 215 (793)
T ss_pred ------------------------------------HHHHHHHHHHhhc-ceeecccchhhhhc----------------
Confidence 1145667777788 99999888887753
Q ss_pred cccccCCeeEEEcCCCcEEEeeEEEEecCCCc
Q 010200 217 TLFTKGHLAKLDLSDGTSLYAKLVVGADGGKS 248 (515)
Q Consensus 217 ~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S 248 (515)
......+.|+||..+.+|+||.|+|.+-
T Consensus 216 ----~~~~~~vr~~DG~~i~ad~VV~a~GIrP 243 (793)
T COG1251 216 ----EDKVEGVRFADGTEIPADLVVMAVGIRP 243 (793)
T ss_pred ----CcceeeEeecCCCcccceeEEEeccccc
Confidence 3456779999999999999999999754
No 342
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.83 E-value=0.0011 Score=70.78 Aligned_cols=34 Identities=29% Similarity=0.476 Sum_probs=30.7
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
|+||||||.+|+.+|..|++. .+++|+|+|+++.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~---~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSED---VSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccC---CCCeEEEEecCCC
Confidence 899999999999999999997 2379999999864
No 343
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.82 E-value=0.0069 Score=64.38 Aligned_cols=34 Identities=35% Similarity=0.563 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
-+|+|||||..|+-+|..|+.. +.+|+|+++++.
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~----~~~Vtlv~~~~~ 385 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGI----VKHVTVLEFAPE 385 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhc----CCEEEEEEECcc
Confidence 4899999999999999999996 899999987763
No 344
>PRK13984 putative oxidoreductase; Provisional
Probab=96.80 E-value=0.0016 Score=70.65 Aligned_cols=38 Identities=32% Similarity=0.432 Sum_probs=34.4
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
....+|+|||+|++|+++|..|++. |++|+|||+.+.+
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~----G~~v~vie~~~~~ 318 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATM----GYEVTVYESLSKP 318 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHC----CCeEEEEecCCCC
Confidence 3467899999999999999999996 9999999998866
No 345
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.031 Score=53.86 Aligned_cols=35 Identities=37% Similarity=0.495 Sum_probs=32.2
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
..||.||||||-+||++|-..++. |.+|.++|--.
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~----G~kV~~lDfV~ 52 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADL----GAKVACLDFVK 52 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhc----CCcEEEEeecc
Confidence 579999999999999999999997 99999999743
No 346
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=96.68 E-value=0.002 Score=70.50 Aligned_cols=42 Identities=24% Similarity=0.354 Sum_probs=36.6
Q ss_pred CCCCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200 50 TNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (515)
Q Consensus 50 ~~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~ 95 (515)
+....-.+|+|||.|||||++|-.|-++ |+-|+||||...++
T Consensus 1780 p~~rtg~~vaiigsgpaglaaadqlnk~----gh~v~vyer~dr~g 1821 (2142)
T KOG0399|consen 1780 PAFRTGKRVAIIGSGPAGLAAADQLNKA----GHTVTVYERSDRVG 1821 (2142)
T ss_pred cccccCcEEEEEccCchhhhHHHHHhhc----CcEEEEEEecCCcC
Confidence 3333457899999999999999999997 99999999999873
No 347
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.66 E-value=0.014 Score=60.74 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=30.4
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
-+|+|||||..|+-+|..|.+. |.+|+|++++.
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~----G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRL----GAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHc----CCEEEEEeecC
Confidence 4799999999999999999997 88999998875
No 348
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.63 E-value=0.013 Score=59.03 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=28.8
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcE-EEEEcCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLS-VAIIDSNP 92 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~-V~v~E~~~ 92 (515)
-.|+|||+|+.|+-+|..|.+. |.+ |+|+++..
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~----g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLL----GAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHc----CCCeEEEEeecc
Confidence 4799999999999999999885 776 99998764
No 349
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.56 E-value=0.0075 Score=60.80 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=37.7
Q ss_pred hcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200 182 QNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 250 (515)
Q Consensus 182 ~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v 250 (515)
++.+ +++++++.|+.+.. ..-++.+.+|+++.++.+|+|+|. |+.
T Consensus 138 ke~g-Ie~~~~t~v~~~D~----------------------~~K~l~~~~Ge~~kys~LilATGs-~~~ 182 (478)
T KOG1336|consen 138 KEKG-IELILGTSVVKADL----------------------ASKTLVLGNGETLKYSKLIIATGS-SAK 182 (478)
T ss_pred hhcC-ceEEEcceeEEeec----------------------cccEEEeCCCceeecceEEEeecC-ccc
Confidence 3446 99999999999976 556788899999999999999999 443
No 350
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.50 E-value=0.0032 Score=65.95 Aligned_cols=40 Identities=35% Similarity=0.539 Sum_probs=36.6
Q ss_pred CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
....||.||||||-||+.+|..|++. +..+|+|+|++..+
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn---~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSEN---PNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccC---CCceEEEEecCCCC
Confidence 45679999999999999999999997 47999999999887
No 351
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.45 E-value=0.024 Score=59.30 Aligned_cols=34 Identities=29% Similarity=0.360 Sum_probs=30.1
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP 92 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~ 92 (515)
.-+|+|||||..|+-+|..|++. |. +|++++++.
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~----G~~~Vtlv~~~~ 307 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRL----GAESVTIVYRRG 307 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc----CCCeEEEeeecC
Confidence 45899999999999999999986 76 899998765
No 352
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=96.35 E-value=0.015 Score=57.79 Aligned_cols=60 Identities=13% Similarity=0.071 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCc--EEEeeEEEEecCCCc-
Q 010200 172 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT--SLYAKLVVGADGGKS- 248 (515)
Q Consensus 172 ~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~--~~~ad~vV~AdG~~S- 248 (515)
.+..+-.+...+.+ +.+..++.|..+.. ..+.+...+|+ ++.+-++|.++|...
T Consensus 274 rl~~yae~~f~~~~-I~~~~~t~Vk~V~~----------------------~~I~~~~~~g~~~~iPYG~lVWatG~~~r 330 (491)
T KOG2495|consen 274 RLVEYAENQFVRDG-IDLDTGTMVKKVTE----------------------KTIHAKTKDGEIEEIPYGLLVWATGNGPR 330 (491)
T ss_pred HHHHHHHHHhhhcc-ceeecccEEEeecC----------------------cEEEEEcCCCceeeecceEEEecCCCCCc
Confidence 35555666666667 99999999999843 66777777775 789999999999643
Q ss_pred -hhhhhc
Q 010200 249 -RVRELA 254 (515)
Q Consensus 249 -~vr~~l 254 (515)
.++..+
T Consensus 331 p~~k~lm 337 (491)
T KOG2495|consen 331 PVIKDLM 337 (491)
T ss_pred hhhhhHh
Confidence 344444
No 353
>PRK12831 putative oxidoreductase; Provisional
Probab=96.23 E-value=0.023 Score=59.41 Aligned_cols=34 Identities=35% Similarity=0.405 Sum_probs=30.6
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
.-+|+|||||.+|+-+|..|.+. |.+|+|++++.
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r~----Ga~Vtlv~r~~ 314 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALRL----GAEVHIVYRRS 314 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHHc----CCEEEEEeecC
Confidence 35899999999999999999997 88999998765
No 354
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.08 E-value=0.32 Score=47.35 Aligned_cols=38 Identities=34% Similarity=0.384 Sum_probs=33.9
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
...||.+|||||-.|+++|...+.+ |.+|.|+|..-..
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~----GAkv~l~E~~f~l 55 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASH----GAKVALCELPFGL 55 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhc----CceEEEEecCCCc
Confidence 3579999999999999999999997 9999999987444
No 355
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=95.91 E-value=0.048 Score=57.25 Aligned_cols=34 Identities=32% Similarity=0.357 Sum_probs=27.3
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCC-cEEEEEcCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNP 92 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G-~~V~v~E~~~ 92 (515)
.-+|+|||||..|+-+|..+.+. | .+|++++...
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~----ga~~Vt~~~~~~ 315 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQ----GAKSVTQRDIMP 315 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc----CCCeEEEccccC
Confidence 34799999999999999888876 5 4788776554
No 356
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.84 E-value=0.05 Score=58.43 Aligned_cols=64 Identities=14% Similarity=0.093 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEE-EcCCCc--EEEeeEEEEecCC
Q 010200 170 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKL-DLSDGT--SLYAKLVVGADGG 246 (515)
Q Consensus 170 r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~g~--~~~ad~vV~AdG~ 246 (515)
-..+...|.+.+.+.| ++|+.++.++++.. + +++ ...++.+ ...+|+ .+.++.||.|+|.
T Consensus 125 G~~i~~~L~~~~~~~g-i~i~~~~~~~~Li~---------~--~~g-----~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 187 (570)
T PRK05675 125 GHALLHTLYQGNLKNG-TTFLNEWYAVDLVK---------N--QDG-----AVVGVIAICIETGETVYIKSKATVLATGG 187 (570)
T ss_pred HHHHHHHHHHHHhccC-CEEEECcEEEEEEE---------c--CCC-----eEEEEEEEEcCCCcEEEEecCeEEECCCC
Confidence 3578899999998877 99999999999976 1 111 1222332 234565 6889999999999
Q ss_pred Cchh
Q 010200 247 KSRV 250 (515)
Q Consensus 247 ~S~v 250 (515)
.+.+
T Consensus 188 ~~~~ 191 (570)
T PRK05675 188 AGRI 191 (570)
T ss_pred cccc
Confidence 8865
No 357
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=95.69 E-value=0.015 Score=55.57 Aligned_cols=40 Identities=28% Similarity=0.431 Sum_probs=31.7
Q ss_pred CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
..+++.|+|||||-+|++.|..+.+.- ..-+|.|+|....
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl--~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKL--GSGSVGIVEPAED 75 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhc--CCCceEEecchhh
Confidence 346799999999999999999887741 2347999997664
No 358
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=95.64 E-value=0.036 Score=54.83 Aligned_cols=62 Identities=26% Similarity=0.250 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCC--Cchh
Q 010200 173 LHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG--KSRV 250 (515)
Q Consensus 173 l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~--~S~v 250 (515)
|-++-.+.+++.| |.|+.+..|.++.. ....+.+.+.||.++..|+||.|.|. +|-+
T Consensus 395 ls~wt~ekir~~G-V~V~pna~v~sv~~--------------------~~~nl~lkL~dG~~l~tD~vVvavG~ePN~el 453 (659)
T KOG1346|consen 395 LSQWTIEKIRKGG-VDVRPNAKVESVRK--------------------CCKNLVLKLSDGSELRTDLVVVAVGEEPNSEL 453 (659)
T ss_pred HHHHHHHHHHhcC-ceeccchhhhhhhh--------------------hccceEEEecCCCeeeeeeEEEEecCCCchhh
Confidence 4455566677766 99999999999865 44568889999999999999999995 5555
Q ss_pred hhhcC
Q 010200 251 RELAG 255 (515)
Q Consensus 251 r~~l~ 255 (515)
.+.-|
T Consensus 454 a~~sg 458 (659)
T KOG1346|consen 454 AEASG 458 (659)
T ss_pred ccccc
Confidence 44433
No 359
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.63 E-value=0.086 Score=56.53 Aligned_cols=34 Identities=32% Similarity=0.463 Sum_probs=30.9
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
.-+|+|||||++|+-+|..|++. |.+|+++++.+
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~----g~~Vtli~~~~ 176 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRY----ASKVTVIVREP 176 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHcc----CCEEEEEEeCC
Confidence 35899999999999999999996 89999999876
No 360
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=95.49 E-value=0.065 Score=52.63 Aligned_cols=35 Identities=14% Similarity=0.424 Sum_probs=31.4
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
-..+|||||..||-++---.+. |-+|+++|-.+..
T Consensus 212 k~~~viG~G~IGLE~gsV~~rL----GseVT~VEf~~~i 246 (506)
T KOG1335|consen 212 KKLTVIGAGYIGLEMGSVWSRL----GSEVTVVEFLDQI 246 (506)
T ss_pred ceEEEEcCceeeeehhhHHHhc----CCeEEEEEehhhh
Confidence 5799999999999999999997 8999999977755
No 361
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=95.44 E-value=0.065 Score=59.72 Aligned_cols=33 Identities=33% Similarity=0.406 Sum_probs=29.6
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcE-EEEEcCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLS-VAIIDSNP 92 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~-V~v~E~~~ 92 (515)
-+|+|||||.+|+-+|..|.+. |.+ |+|++++.
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~----Ga~~Vtlv~r~~ 604 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRL----GAERVTIVYRRS 604 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHc----CCCeEEEeeecC
Confidence 5799999999999999999997 776 99998775
No 362
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=95.43 E-value=0.76 Score=47.16 Aligned_cols=53 Identities=17% Similarity=0.092 Sum_probs=38.0
Q ss_pred HHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEc-CCCcEEEeeEEEEecCCC
Q 010200 174 HSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL-SDGTSLYAKLVVGADGGK 247 (515)
Q Consensus 174 ~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~g~~~~ad~vV~AdG~~ 247 (515)
.+.|.+.+++.| ++|+++++|++|+. .++.+++.. .+|+++.||.||.|.-..
T Consensus 200 ~~~l~~~l~~~g-~~i~~~~~V~~i~~--------------------~~~~~~~~~~~~g~~~~~d~vi~a~p~~ 253 (419)
T TIGR03467 200 PEPARRWLDSRG-GEVRLGTRVRSIEA--------------------NAGGIRALVLSGGETLPADAVVLAVPPR 253 (419)
T ss_pred HHHHHHHHHHcC-CEEEcCCeeeEEEE--------------------cCCcceEEEecCCccccCCEEEEcCCHH
Confidence 344666777777 89999999999987 223344333 367789999999986654
No 363
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.38 E-value=0.022 Score=50.10 Aligned_cols=32 Identities=34% Similarity=0.447 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
+|.|+|||-.|.++|..|++. |++|.++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~----g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN----GHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC----TEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHc----CCEEEEEeccH
Confidence 589999999999999999996 99999999875
No 364
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=95.28 E-value=1.3 Score=46.90 Aligned_cols=59 Identities=17% Similarity=0.163 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCC-----cEEEeeEEEEec
Q 010200 170 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG-----TSLYAKLVVGAD 244 (515)
Q Consensus 170 r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-----~~~~ad~vV~Ad 244 (515)
-..|.+.|.+.+++.| ++|+++++|++|..+ ++....+...++ +++.+|.||.+.
T Consensus 231 ~~~l~~aL~~~~~~~G-~~i~~~~~V~~I~~~-------------------~~~~~gv~~~~~~~~~~~~~~ad~VI~~~ 290 (492)
T TIGR02733 231 MQTLSDRLVEALKRDG-GNLLTGQRVTAIHTK-------------------GGRAGWVVVVDSRKQEDLNVKADDVVANL 290 (492)
T ss_pred HHHHHHHHHHHHHhcC-CEEeCCceEEEEEEe-------------------CCeEEEEEEecCCCCceEEEECCEEEECC
Confidence 4678999999999888 899999999999761 111122223233 578999999888
Q ss_pred CCCc
Q 010200 245 GGKS 248 (515)
Q Consensus 245 G~~S 248 (515)
-.+-
T Consensus 291 ~~~~ 294 (492)
T TIGR02733 291 PPQS 294 (492)
T ss_pred CHHH
Confidence 7643
No 365
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=95.21 E-value=0.1 Score=51.71 Aligned_cols=137 Identities=19% Similarity=0.251 Sum_probs=81.8
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhh
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ 132 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~ 132 (515)
+.+..-+|||||-+-.+++...+... .+.+|.++--.+.... .+ .|-+.+ ||-.-..
T Consensus 176 p~hvp~liigggtaAfaa~rai~s~d--a~A~vl~iseepelPY-----------mR----PPLSKE------LW~~~dp 232 (659)
T KOG1346|consen 176 PKHVPYLIIGGGTAAFAAFRAIKSND--ATAKVLMISEEPELPY-----------MR----PPLSKE------LWWYGDP 232 (659)
T ss_pred cccCceeEEcCCchhhhcccccccCC--CCceEEeeccCccCcc-----------cC----CCcchh------ceecCCC
Confidence 45678999999988877776665432 4778888876665410 00 000000 1100001
Q ss_pred hhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCC
Q 010200 133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST 212 (515)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~ 212 (515)
. ....+.+....+.....|- .+.++.++..+|.... .|++-+..|.+|+.+..
T Consensus 233 n---~~k~lrfkqwsGkeRsiff------epd~FfvspeDLp~~~------nGGvAvl~G~kvvkid~------------ 285 (659)
T KOG1346|consen 233 N---SAKKLRFKQWSGKERSIFF------EPDGFFVSPEDLPKAV------NGGVAVLRGRKVVKIDE------------ 285 (659)
T ss_pred C---hhhheeecccCCccceeEe------cCCcceeChhHCcccc------cCceEEEeccceEEeec------------
Confidence 0 1223333333333222221 2345678887775532 35699999999999964
Q ss_pred CCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200 213 PSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR 249 (515)
Q Consensus 213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~ 249 (515)
..-.|.++||.+|.+|-..+|+|..-+
T Consensus 286 ----------~d~~V~LnDG~~I~YdkcLIATG~~Pk 312 (659)
T KOG1346|consen 286 ----------EDKKVILNDGTTIGYDKCLIATGVRPK 312 (659)
T ss_pred ----------ccCeEEecCCcEeehhheeeecCcCcc
Confidence 334667789999999999999998654
No 366
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.15 E-value=0.021 Score=53.42 Aligned_cols=65 Identities=22% Similarity=0.288 Sum_probs=46.4
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCc
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAW 127 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~ 127 (515)
++++|||+|..|.++|..|.+. |++|+++|+++..-..-. ........+..+....+.|+++|+.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~----g~~Vv~Id~d~~~~~~~~---~~~~~~~~v~gd~t~~~~L~~agi~ 65 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE----GHNVVLIDRDEERVEEFL---ADELDTHVVIGDATDEDVLEEAGID 65 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC----CCceEEEEcCHHHHHHHh---hhhcceEEEEecCCCHHHHHhcCCC
Confidence 3699999999999999999996 999999999886421100 0012233455556667788888763
No 367
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.92 E-value=0.23 Score=54.50 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=28.7
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA 93 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~ 93 (515)
.+|+|||||..|+-+|..+.+. |. +|+++.++..
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~----ga~~Vt~i~~~~~ 503 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRH----GASNVTCAYRRDE 503 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHc----CCCeEEEeEecCC
Confidence 4799999999999999988886 65 7999887653
No 368
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=94.92 E-value=0.23 Score=52.07 Aligned_cols=35 Identities=23% Similarity=0.225 Sum_probs=29.9
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA 93 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~ 93 (515)
.-+|+|||||..|+-+|..+.+. |. +|+|+++++.
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~----Ga~~Vtvv~r~~~ 317 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRL----GAASVTCAYRRDE 317 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc----CCCeEEEEEecCc
Confidence 35799999999999999998886 74 7999998763
No 369
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.70 E-value=0.033 Score=50.16 Aligned_cols=33 Identities=33% Similarity=0.585 Sum_probs=28.5
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
+|.|||+|.-|...|..++++ |++|+++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~----G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA----GYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT----TSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhC----CCcEEEEECChH
Confidence 489999999999999999996 999999999774
No 370
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=94.54 E-value=0.16 Score=55.49 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=29.5
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP 92 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~ 92 (515)
.-+|+|||||..|+-+|..|.+. |. +|+|++++.
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~----Ga~~Vtlv~r~~ 357 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRL----GAESVTILYRRT 357 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc----CCCeEEEeeecC
Confidence 45899999999999999999986 64 699998776
No 371
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=94.53 E-value=0.044 Score=56.18 Aligned_cols=41 Identities=34% Similarity=0.503 Sum_probs=31.4
Q ss_pred CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCC
Q 010200 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK 96 (515)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~ 96 (515)
|+.+|||||+|-|+.-+.+|.+|++. |.+|+.+|+++..+.
T Consensus 1 m~~~yDviI~GTGl~esila~als~~----GkkVLhiD~n~yYGg 41 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRS----GKKVLHIDRNDYYGG 41 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHT----T--EEEE-SSSSSCG
T ss_pred CCccceEEEECCCcHHHHHHHHHHhc----CCEEEecCCCCCcCC
Confidence 45689999999999999999999996 999999999998753
No 372
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=94.44 E-value=0.039 Score=49.88 Aligned_cols=34 Identities=35% Similarity=0.490 Sum_probs=27.1
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
++|.|||.|-.||.+|..|++. |++|+.+|.++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~----G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK----GHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT----TSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhC----CCEEEEEeCChH
Confidence 4799999999999999999996 999999998874
No 373
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=94.42 E-value=0.12 Score=52.82 Aligned_cols=35 Identities=26% Similarity=0.571 Sum_probs=28.8
Q ss_pred EEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 58 VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 58 VvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
++|||+|++|+.+|..|.+.. .+.+++++.+....
T Consensus 1 ivivG~g~aG~~aa~~l~~~~--~~~~i~i~~~~~~~ 35 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLL--LAAEITLIGREPKY 35 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcC--CCCCEEEEeCCCCC
Confidence 589999999999999888854 36788888877655
No 374
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=94.24 E-value=0.3 Score=55.25 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=29.7
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCC-cEEEEEcCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNP 92 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G-~~V~v~E~~~ 92 (515)
.-+|+|||||.+|+-+|..+.+. .| .+|+|+.++.
T Consensus 668 GKrVVVIGGGnVAmD~Ar~a~Rl---gGakeVTLVyRr~ 703 (1019)
T PRK09853 668 GKHVVVVGGGNTAMDAARAALRV---PGVEKVTVVYRRT 703 (1019)
T ss_pred CCEEEEECCChHHHHHHHHHHhc---CCCceEEEEEccC
Confidence 35799999999999999988886 25 4899999876
No 375
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.23 E-value=0.051 Score=56.88 Aligned_cols=34 Identities=29% Similarity=0.291 Sum_probs=31.1
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
.|+|||.|++|+++|..|++. |++|+++|+...+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~----G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ----GWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC----CCEEEEECCCCch
Confidence 589999999999999999996 9999999988755
No 376
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=94.13 E-value=0.32 Score=55.36 Aligned_cols=34 Identities=26% Similarity=0.339 Sum_probs=30.2
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
.-+|+|||||.+|+=+|..+.+. |.+|+++.++.
T Consensus 447 Gk~VvVIGGG~tA~D~A~ta~R~----Ga~Vtlv~rr~ 480 (944)
T PRK12779 447 GKEVFVIGGGNTAMDAARTAKRL----GGNVTIVYRRT 480 (944)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc----CCEEEEEEecC
Confidence 35799999999999999999997 88999998764
No 377
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.02 E-value=0.06 Score=56.72 Aligned_cols=33 Identities=30% Similarity=0.444 Sum_probs=30.1
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
.+|+|||+|++|+.+|..|++. |++|+++|+.+
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~----G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLEL----GARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHC----CCEEEEEeCCc
Confidence 4799999999999999999985 99999999765
No 378
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=93.80 E-value=0.11 Score=54.20 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=30.3
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
.-+|+|||+|.+|+=.|..|++. +.+|+++.|..
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~----a~~V~l~~r~~ 237 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKV----AKEVHIASRAS 237 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHh----CCeEEEEEeec
Confidence 35799999999999999999996 78999998765
No 379
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.68 E-value=0.099 Score=42.23 Aligned_cols=34 Identities=32% Similarity=0.343 Sum_probs=29.8
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN 91 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~ 91 (515)
+...|+|||||..|..-+..|.+. |.+|+|+.+.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~----gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEA----GAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCC----TBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC----CCEEEEECCc
Confidence 346899999999999999999996 8999999765
No 380
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=93.67 E-value=0.094 Score=51.83 Aligned_cols=35 Identities=17% Similarity=0.316 Sum_probs=31.4
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
..++|+|||+|-.|.++|..|+++ |++|+++.|+.
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~----g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARA----GFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHC----CCeEEEEEeCC
Confidence 346899999999999999999996 99999998865
No 381
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=93.42 E-value=0.24 Score=52.61 Aligned_cols=35 Identities=31% Similarity=0.382 Sum_probs=28.4
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
.-+|+|||+|.+|.=.|..|++. ..+|.+.=|...
T Consensus 183 gKrVlVVG~g~Sg~DIa~el~~~----a~~v~~s~R~~~ 217 (531)
T PF00743_consen 183 GKRVLVVGGGNSGADIAVELSRV----AKKVYLSTRRGA 217 (531)
T ss_dssp TSEEEEESSSHHHHHHHHHHTTT----SCCEEEECC---
T ss_pred CCEEEEEeCCHhHHHHHHHHHHh----cCCeEEEEeccc
Confidence 45899999999999999999996 678888877653
No 382
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=93.41 E-value=0.085 Score=55.25 Aligned_cols=36 Identities=25% Similarity=0.546 Sum_probs=32.6
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
..+|+|||||++|+-+|..|++. |.+|+|+|+.+.+
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~----g~~Vtli~~~~~~ 205 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASL----GSKVTVIEMLDRI 205 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc----CCcEEEEEcCCCC
Confidence 35899999999999999999996 8999999998765
No 383
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=93.31 E-value=0.13 Score=53.92 Aligned_cols=35 Identities=34% Similarity=0.599 Sum_probs=32.1
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
-+|+|||||++|+-+|..|++. |.+|+|+|+.+.+
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~----g~~Vtli~~~~~~ 201 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARL----GSEVTILQRSDRL 201 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHc----CCcEEEEEcCCcC
Confidence 5899999999999999999996 8999999998755
No 384
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.29 E-value=0.088 Score=51.89 Aligned_cols=33 Identities=36% Similarity=0.619 Sum_probs=30.7
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
+|.|||+|.-|...|..|++. |++|+++|+.+.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~----G~~V~v~d~~~~ 36 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARA----GHEVRLWDADPA 36 (308)
T ss_pred EEEEECccHHHHHHHHHHHHC----CCeeEEEeCCHH
Confidence 699999999999999999996 999999999874
No 385
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.07 E-value=0.13 Score=44.69 Aligned_cols=31 Identities=26% Similarity=0.567 Sum_probs=28.8
Q ss_pred EEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 58 VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 58 VvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
|+|+|+|-.|+..|..|++. |++|.++.|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~----g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA----GHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT----TCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHC----CCceEEEEccc
Confidence 78999999999999999996 99999998876
No 386
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=92.99 E-value=0.097 Score=51.22 Aligned_cols=43 Identities=28% Similarity=0.372 Sum_probs=36.6
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~ 95 (515)
..+..+-|||||+|||++|..|-|-+-..|-++.|+|--+..+
T Consensus 20 VdqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~G 62 (587)
T COG4716 20 VDQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAG 62 (587)
T ss_pred cccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccC
Confidence 3456789999999999999999987666789999999888764
No 387
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=92.97 E-value=0.14 Score=45.47 Aligned_cols=35 Identities=29% Similarity=0.365 Sum_probs=29.9
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
.+..|+|+|+|.+|..+|..|... |.+|+++|...
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~l----Ga~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGL----GAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHT----T-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHC----CCEEEeccCCH
Confidence 457899999999999999999998 99999999875
No 388
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.79 E-value=0.18 Score=52.88 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=31.8
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
-+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~----G~~Vtlv~~~~~~ 207 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNY----GVDVTIVEFLDRA 207 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHc----CCeEEEEecCCCc
Confidence 5899999999999999999996 8999999987754
No 389
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=92.76 E-value=0.82 Score=49.12 Aligned_cols=46 Identities=7% Similarity=0.047 Sum_probs=38.1
Q ss_pred hcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200 182 QNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 250 (515)
Q Consensus 182 ~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v 250 (515)
++.+ ++++.+.+|+.+.. ..-.|..+.|.++.+|-+|.|+|..-.+
T Consensus 70 ~~~~-i~L~~~~~v~~idr----------------------~~k~V~t~~g~~~~YDkLilATGS~pfi 115 (793)
T COG1251 70 EENG-ITLYTGEKVIQIDR----------------------ANKVVTTDAGRTVSYDKLIIATGSYPFI 115 (793)
T ss_pred HHcC-cEEEcCCeeEEecc----------------------CcceEEccCCcEeecceeEEecCccccc
Confidence 4456 99999999999965 4456777889999999999999987665
No 390
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=92.66 E-value=0.13 Score=50.50 Aligned_cols=34 Identities=29% Similarity=0.470 Sum_probs=31.0
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
.++|+|||+|..|...|..|++. |.+|+++.|..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~----G~~V~lv~r~~ 35 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARA----GLPVRLILRDR 35 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhC----CCCeEEEEech
Confidence 46799999999999999999996 89999999864
No 391
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=92.65 E-value=0.17 Score=46.56 Aligned_cols=33 Identities=30% Similarity=0.329 Sum_probs=29.8
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
..|+|||||.+|..-+..|.+. |.+|+|+....
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~----ga~VtVvsp~~ 42 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKA----GAQLRVIAEEL 42 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHC----CCEEEEEcCCC
Confidence 4799999999999999999996 89999998654
No 392
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=92.63 E-value=0.2 Score=43.95 Aligned_cols=31 Identities=23% Similarity=0.390 Sum_probs=28.1
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEc
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIID 89 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E 89 (515)
...|+|||||..|...|..|.+. |.+|+|+.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~----ga~V~VIs 43 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDT----GAFVTVVS 43 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC----CCEEEEEc
Confidence 45799999999999999999986 99999995
No 393
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.55 E-value=0.15 Score=49.76 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=31.0
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
.+|.|||+|.-|...|..|++. |++|+++|+++.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~----G~~V~l~d~~~~ 38 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA----GYDVLLNDVSAD 38 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC----CCeEEEEeCCHH
Confidence 4699999999999999999996 999999998763
No 394
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=92.50 E-value=1.1 Score=51.00 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=29.7
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP 92 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~ 92 (515)
.-+|+|||||.+|+-+|..+.+. .|. +|+|++++.
T Consensus 666 GK~VVVIGGGnvAmD~Ar~a~Rl---~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 666 GKHVVVVGGGNTAMDAARAALRV---PGVEKVTVVYRRT 701 (1012)
T ss_pred CCeEEEECCCHHHHHHHHHHHHh---CCCceEEEEEccC
Confidence 45799999999999999998875 364 799999876
No 395
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.40 E-value=0.17 Score=49.20 Aligned_cols=34 Identities=29% Similarity=0.469 Sum_probs=31.4
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
.|.|||+|.-|...|..|++. |++|+++|+.+..
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~----G~~V~l~d~~~~~ 40 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARA----GVDVLVFETTEEL 40 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhC----CCEEEEEECCHHH
Confidence 799999999999999999996 9999999988754
No 396
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=92.25 E-value=0.16 Score=43.27 Aligned_cols=32 Identities=31% Similarity=0.518 Sum_probs=27.9
Q ss_pred EEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 58 VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 58 VvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
++|+|+|+.+.++|..++.. |++|+|+|.++.
T Consensus 1 L~I~GaG~va~al~~la~~l----g~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALL----GFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHC----TEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhC----CCEEEEEcCCcc
Confidence 58999999999999999997 999999999865
No 397
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.16 E-value=0.17 Score=49.39 Aligned_cols=34 Identities=29% Similarity=0.421 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
..|.|||+|..|...|..|++. |++|+++|+++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~----G~~V~l~d~~~~ 37 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH----GFDVTIYDISDE 37 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc----CCeEEEEeCCHH
Confidence 4699999999999999999996 999999998763
No 398
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.08 E-value=0.23 Score=48.98 Aligned_cols=35 Identities=23% Similarity=0.386 Sum_probs=31.4
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
..|.|||+|.-|...|..++.+ |++|+++|..+..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a----G~~V~l~D~~~~~ 42 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH----GLDVVAWDPAPGA 42 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC----CCeEEEEeCCHHH
Confidence 4699999999999999999996 9999999988743
No 399
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.07 E-value=0.21 Score=52.05 Aligned_cols=34 Identities=35% Similarity=0.465 Sum_probs=31.1
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
..+|+|||+|.+|+.+|..|++. |++|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~----G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKL----GAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC----CCEEEEEeCCc
Confidence 46799999999999999999996 99999999875
No 400
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.83 E-value=0.17 Score=49.42 Aligned_cols=33 Identities=24% Similarity=0.486 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
+|.|||+|.-|...|..|++. |++|+++|+++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~----G~~V~~~d~~~~ 35 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVS----GFQTTLVDIKQE 35 (288)
T ss_pred EEEEECccHHHHHHHHHHHhC----CCcEEEEeCCHH
Confidence 599999999999999999996 999999998864
No 401
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=91.82 E-value=0.17 Score=52.98 Aligned_cols=36 Identities=28% Similarity=0.440 Sum_probs=31.9
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
...+|+|+|+|++|+.++..++.. |.+|.++|.++.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~l----GA~V~a~D~~~~ 199 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSL----GAIVRAFDTRPE 199 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC----CCEEEEEeCCHH
Confidence 357899999999999999999987 889999998774
No 402
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=91.78 E-value=0.12 Score=48.13 Aligned_cols=35 Identities=29% Similarity=0.511 Sum_probs=28.7
Q ss_pred EEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 58 VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 58 VvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
.+|||||+||.++|-.|+++- +..+|+++-..+..
T Consensus 2 fivvgggiagvscaeqla~~~--psa~illitass~v 36 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLE--PSAEILLITASSFV 36 (334)
T ss_pred eEEEcCccccccHHHHHHhhC--CCCcEEEEeccHHH
Confidence 589999999999999999863 46788888766644
No 403
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=91.77 E-value=0.2 Score=50.57 Aligned_cols=35 Identities=34% Similarity=0.538 Sum_probs=31.3
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
...+|+|||+|.+|+.+|..|++. |.+|+++|++.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l----Ga~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL----GATVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC----CCeEEEEECCH
Confidence 346799999999999999999997 88999999875
No 404
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=91.70 E-value=0.29 Score=42.01 Aligned_cols=35 Identities=40% Similarity=0.528 Sum_probs=30.4
Q ss_pred ccEEEECC-CHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 56 YDVAVVGG-GMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 56 ~dVvIVGg-G~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
++|+|||+ |..|.++|+.|...+. +-++.++|...
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l--~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGL--ADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTT--SSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC--CCceEEeccCc
Confidence 47999999 9999999999999753 45799999886
No 405
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=91.66 E-value=0.26 Score=45.04 Aligned_cols=34 Identities=35% Similarity=0.528 Sum_probs=28.5
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
.-+|+|||+|.++.-+|..|++. |.+|+++=|.+
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~----g~~V~~~~R~~ 200 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKA----GKSVTLVTRSP 200 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTT----CSEEEEEESS-
T ss_pred CCcEEEEcChHHHHHHHHHHHhh----CCEEEEEecCC
Confidence 46899999999999999999997 89999998876
No 406
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=91.60 E-value=0.19 Score=49.30 Aligned_cols=30 Identities=30% Similarity=0.405 Sum_probs=28.4
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcC
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDS 90 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~ 90 (515)
+|+|||+|..|.++|..|++. |++|++++|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~----g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA----GRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC----CCceEEEec
Confidence 699999999999999999996 899999998
No 407
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=91.57 E-value=0.22 Score=48.91 Aligned_cols=32 Identities=22% Similarity=0.461 Sum_probs=29.5
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
+|+|||+|-.|.++|..|++. |++|++++|+.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~----g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA----GHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC----CCeEEEEECCh
Confidence 599999999999999999996 89999999854
No 408
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=91.49 E-value=0.3 Score=44.84 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=29.3
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN 91 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~ 91 (515)
...|+|||||-.|...|..|.+. |.+|+|+++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~----ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKY----GAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC----CCeEEEEcCC
Confidence 45799999999999999999996 8999999754
No 409
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=91.47 E-value=0.21 Score=49.72 Aligned_cols=34 Identities=26% Similarity=0.516 Sum_probs=31.3
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
++|.|||.|-.||..|..|++. |++|+.+|.++.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~----GHeVv~vDid~~ 34 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL----GHEVVCVDIDES 34 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc----CCeEEEEeCCHH
Confidence 4799999999999999999997 999999998873
No 410
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.37 E-value=0.25 Score=48.62 Aligned_cols=34 Identities=35% Similarity=0.512 Sum_probs=29.9
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCC--cEEEEEcCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKH--LSVAIIDSNPA 93 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G--~~V~v~E~~~~ 93 (515)
++|.|||+|..|.++|+.|++. | ..|.++|++..
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~----g~~~ev~l~D~~~~ 36 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLR----GLASEIVLVDINKA 36 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHc----CCCCEEEEEECCch
Confidence 3699999999999999999996 6 58999998764
No 411
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=91.36 E-value=1.3 Score=50.98 Aligned_cols=34 Identities=18% Similarity=0.197 Sum_probs=28.2
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP 92 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~ 92 (515)
.-+|+|||||.+|+=+|..+.+. |. .|+++.++.
T Consensus 571 Gk~VvVIGgG~tA~D~A~~a~rl----Ga~~Vtiv~rr~ 605 (1006)
T PRK12775 571 GKSVVVIGAGNTAMDCLRVAKRL----GAPTVRCVYRRS 605 (1006)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc----CCCEEEEEeecC
Confidence 45899999999999999999997 65 577777654
No 412
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.29 E-value=0.25 Score=50.42 Aligned_cols=35 Identities=29% Similarity=0.283 Sum_probs=31.2
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
.-.|+|+|+|+.|+.+|..|+.. |.+|+++|.++.
T Consensus 202 GktVvViG~G~IG~~va~~ak~~----Ga~ViV~d~d~~ 236 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQ----GARVIVTEVDPI 236 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC----CCEEEEEECChh
Confidence 45799999999999999999986 889999998763
No 413
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.19 E-value=0.23 Score=48.51 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
..|.|||+|.-|...|..|++. |++|+++|+++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~----G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART----GYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc----CCeEEEEeCCHH
Confidence 3599999999999999999996 999999998764
No 414
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=91.09 E-value=2.2 Score=41.88 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
.+|+|||||-+.+--|+.|++. +-+|+++=|++..
T Consensus 144 k~v~ViGgG~sAve~Al~L~~~----a~~Vtlv~r~~~~ 178 (305)
T COG0492 144 KDVVVIGGGDSAVEEALYLSKI----AKKVTLVHRRDEF 178 (305)
T ss_pred CeEEEEcCCHHHHHHHHHHHHh----cCeEEEEecCccc
Confidence 4999999999999999999997 7789999887754
No 415
>PLN02852 ferredoxin-NADP+ reductase
Probab=90.93 E-value=2.5 Score=44.37 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=20.2
Q ss_pred CccEEEECCCHHHHHHHHHHhcC
Q 010200 55 QYDVAVVGGGMVGMALACSLASM 77 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~ 77 (515)
.-+|+|||+|..|+-+|..|.+.
T Consensus 166 gk~VvVIGgGnvAlD~Ar~L~~~ 188 (491)
T PLN02852 166 SDTAVVLGQGNVALDCARILLRP 188 (491)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC
Confidence 35799999999999999998873
No 416
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.85 E-value=0.3 Score=48.60 Aligned_cols=34 Identities=38% Similarity=0.458 Sum_probs=30.8
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
.++|.|||+|.-|.+.|..|++. |++|++++|.+
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~----G~~V~~~~r~~ 37 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASK----GVPVRLWARRP 37 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC----CCeEEEEeCCH
Confidence 35799999999999999999996 99999999865
No 417
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.63 E-value=2.1 Score=46.88 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=28.9
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCC-cEEEEEcCCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPA 93 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G-~~V~v~E~~~~ 93 (515)
.-+|+|||||..|+-+|..+.+. | .+|++++++..
T Consensus 451 gk~vvViGgG~~a~d~a~~~~~~----Ga~~Vt~v~rr~~ 486 (639)
T PRK12809 451 GKRVVVLGGGDTTMDCLRTSIRL----NAASVTCAYRRDE 486 (639)
T ss_pred CCeEEEECCcHHHHHHHHHHHHc----CCCeEEEeeecCc
Confidence 35899999999999999887775 6 47999988753
No 418
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.54 E-value=0.26 Score=47.88 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
+|.|||+|..|...|..|++. |++|+++|.++.
T Consensus 5 kI~VIG~G~mG~~ia~~la~~----g~~V~~~d~~~~ 37 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA----GYDVVMVDISDA 37 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC----CCceEEEeCCHH
Confidence 699999999999999999996 899999998764
No 419
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=90.53 E-value=0.8 Score=51.45 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=25.0
Q ss_pred ccEEEECCCHHHHHHHHHHhcC-CCCCCcEEEEEcCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASM-PLTKHLSVAIIDSNP 92 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~-~~~~G~~V~v~E~~~ 92 (515)
..|||||||.+|+=+|....++ . -+..+.+.+...
T Consensus 551 k~VVVIGGGnTAmD~ArtAlr~~~--l~ve~~l~~~~~ 586 (1028)
T PRK06567 551 MPIAVIGGGLTSLDAATESLYYYK--KQVEEFAKDYIE 586 (1028)
T ss_pred CCEEEEcCcHHHHHHHHHHHhhcc--chhhHHHHhhhh
Confidence 5799999999999999865541 1 156666666543
No 420
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=90.49 E-value=0.32 Score=39.98 Aligned_cols=32 Identities=31% Similarity=0.570 Sum_probs=28.5
Q ss_pred EEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 58 VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 58 VvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
|+|||.|..|..++..|.+. +.+|+++|+++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~----~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG----GIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT----TSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhC----CCEEEEEECCcH
Confidence 79999999999999999995 789999999874
No 421
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=90.48 E-value=0.39 Score=43.97 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=31.2
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP 92 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~ 92 (515)
...+|+|||+|-.|...|..|++. |+ +++|+|.+.
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~----Gvg~i~lvD~D~ 55 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARA----GIGKLILVDFDV 55 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHc----CCCEEEEECCCE
Confidence 346899999999999999999997 77 699999885
No 422
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=90.36 E-value=0.32 Score=50.02 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
.+|.|||.|-.|+.+|..|++. |++|+++|+++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~----G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASR----QKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhC----CCEEEEEeCCHH
Confidence 5799999999999999999996 999999998764
No 423
>PRK13984 putative oxidoreductase; Provisional
Probab=90.27 E-value=1.6 Score=47.46 Aligned_cols=35 Identities=17% Similarity=0.070 Sum_probs=27.8
Q ss_pred cCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHh
Q 010200 393 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIA 433 (515)
Q Consensus 393 ~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~ 433 (515)
.++|+.+||+++.. .+-.|+.++..+|..|.+.+.
T Consensus 568 ~~gVfAaGD~~~~~------~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 568 IPWLFAGGDIVHGP------DIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred CCCEEEecCcCCch------HHHHHHHHHHHHHHHHHHHhc
Confidence 35799999998633 356799999999999988764
No 424
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=90.02 E-value=0.38 Score=50.16 Aligned_cols=36 Identities=19% Similarity=0.347 Sum_probs=31.0
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
++|+|||.|-.|+.+|..|++.| .|++|+.+|.++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g--~g~~V~gvD~~~~ 37 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKC--PDIEVVVVDISVP 37 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC--CCCeEEEEECCHH
Confidence 46999999999999999999863 2688999998764
No 425
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=89.94 E-value=0.53 Score=44.60 Aligned_cols=36 Identities=36% Similarity=0.456 Sum_probs=32.8
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
....++|+|||+.+..+|..++.. |++|+|+|.++.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~l----Gf~V~v~D~R~~ 134 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPL----PCRVTWVDSREA 134 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcC----CCEEEEEeCCcc
Confidence 457899999999999999999997 999999998765
No 426
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=89.94 E-value=0.38 Score=48.16 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=29.9
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
.+|.|||+|..|...|..|++. |++|+++++..
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~----G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA----GADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc----CCcEEEEecHH
Confidence 4699999999999999999996 89999999753
No 427
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.83 E-value=0.48 Score=46.68 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=31.5
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
.++|.|||+|--|.++|..|++. |++|.+++|...
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~----G~~V~~~~r~~~ 38 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASAN----GHRVRVWSRRSG 38 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHC----CCEEEEEeCCCC
Confidence 45799999999999999999996 999999998763
No 428
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.69 E-value=0.41 Score=47.56 Aligned_cols=32 Identities=31% Similarity=0.561 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
+|.|||+|--|.++|..|++. |++|.++.|+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~----g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK----KISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC----CCeEEEEecCH
Confidence 599999999999999999996 89999999865
No 429
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=89.66 E-value=0.48 Score=46.53 Aligned_cols=34 Identities=29% Similarity=0.525 Sum_probs=29.6
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA 93 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~ 93 (515)
.+|.|||+|..|+..|+.|+.. |+ +|+++|....
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~----g~~~VvlvDi~~~ 36 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK----ELADLVLLDVVEG 36 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc----CCCeEEEEeCCCC
Confidence 4799999999999999999986 55 8999998553
No 430
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=89.59 E-value=2.7 Score=42.15 Aligned_cols=147 Identities=14% Similarity=0.146 Sum_probs=76.1
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhcc
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHA 136 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~ 136 (515)
.|.|||+|-++.-+-+.|....+....++..+-|..... +.......-..+.|.-.+.+- ++.+...+...
T Consensus 189 ~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~------p~d~Skf~~e~F~P~y~dyfy--~l~~~~r~~ll- 259 (436)
T COG3486 189 SVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFL------PMDYSKFGLEYFSPEYTDYFY--GLPPEARDELL- 259 (436)
T ss_pred eEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCC------ccccchhhhhhcCchhHHHHh--cCCHHHHHHHH-
Confidence 399999999999888888764322233455566655431 011111112233333333322 22222222111
Q ss_pred ccceEEEEeCCCccceeeecccCCCCcceEEech---HHHHHHHHHHHhc--CCCceEEcCCeeEEEEeCCCCCCcccCC
Q 010200 137 YFDKMQVWDYTGLGYTKYNARDVNKEILGCVVEN---KVLHSSLLSCMQN--TEFQKTIYPSRLTSMALLPSSSSISVDS 211 (515)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r---~~l~~~L~~~~~~--~g~v~i~~~~~v~~i~~~~~~~~~~~~~ 211 (515)
.... -.++ .|+- .++-+.|.++-.. ...+.++.+++|..++.
T Consensus 260 ~~~~-~~Yk---------------------gI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~----------- 306 (436)
T COG3486 260 RKQR-LLYK---------------------GISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEP----------- 306 (436)
T ss_pred hhcC-cccc---------------------ccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeec-----------
Confidence 0010 0000 1221 2344445544221 23488999999999975
Q ss_pred CCCcccccccC-CeeEEEcCC---C--cEEEeeEEEEecCCCchhhhhc
Q 010200 212 TPSATTLFTKG-HLAKLDLSD---G--TSLYAKLVVGADGGKSRVRELA 254 (515)
Q Consensus 212 ~~~~~~~~~~~-~~~~v~~~~---g--~~~~ad~vV~AdG~~S~vr~~l 254 (515)
.+ +.+.+.+.. | ++++.|.||.|+|.+-.+-..+
T Consensus 307 ---------~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL 346 (436)
T COG3486 307 ---------AGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFL 346 (436)
T ss_pred ---------CCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhh
Confidence 22 225555432 2 3899999999999986555444
No 431
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.56 E-value=0.47 Score=46.80 Aligned_cols=33 Identities=30% Similarity=0.524 Sum_probs=30.1
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
.+|.|||+|.-|...|..|++. |++|+++|++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~----g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK----GLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC----CCeEEEEECCH
Confidence 4699999999999999999996 89999999866
No 432
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=89.54 E-value=0.34 Score=49.84 Aligned_cols=33 Identities=36% Similarity=0.537 Sum_probs=30.5
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
+|.|||.|..|+.+|..|++. |++|+++|+++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~----G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADL----GHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhc----CCeEEEEECCHH
Confidence 699999999999999999996 999999998764
No 433
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=89.32 E-value=0.37 Score=40.99 Aligned_cols=35 Identities=26% Similarity=0.454 Sum_probs=30.3
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA 93 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~ 93 (515)
+.+|+|||+|-.|..+|..|++. |. +++|+|.+..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~----Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARS----GVGKITLVDDDIV 37 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHH----TTSEEEEEESSBB
T ss_pred CCEEEEECcCHHHHHHHHHHHHh----CCCceeecCCcce
Confidence 35799999999999999999997 66 7999998764
No 434
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=89.26 E-value=0.38 Score=46.13 Aligned_cols=36 Identities=33% Similarity=0.378 Sum_probs=32.4
Q ss_pred CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
..+.+|+|||||.+|.-+|..+... |.+|+|+|.+.
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~gl----gA~Vtild~n~ 201 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGL----GADVTILDLNI 201 (371)
T ss_pred CCCccEEEECCccccchHHHHHhcc----CCeeEEEecCH
Confidence 3567899999999999999999997 89999999885
No 435
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=89.23 E-value=0.5 Score=46.19 Aligned_cols=34 Identities=38% Similarity=0.567 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
..|.|||+|.-|...|..|++. |++|.++|+.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~----G~~V~~~d~~~~ 38 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA----GMDVWLLDSDPA 38 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc----CCeEEEEeCCHH
Confidence 3599999999999999999996 999999998764
No 436
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=89.00 E-value=0.6 Score=39.75 Aligned_cols=35 Identities=29% Similarity=0.494 Sum_probs=30.3
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcE-EEEEcCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLS-VAIIDSNP 92 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~-V~v~E~~~ 92 (515)
....|+|||+|-+|-+++..|+.. |.+ |+|+-|..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~----g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAAL----GAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHT----TSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEEECCH
Confidence 346899999999999999999997 765 99998765
No 437
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=88.98 E-value=0.52 Score=47.92 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=31.9
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
..-.|+|||.|+.|..+|..|+.. |.+|+++|.++.
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~----Ga~ViV~d~dp~ 229 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGM----GARVIVTEVDPI 229 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhC----cCEEEEEeCChh
Confidence 345899999999999999999986 899999998773
No 438
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=88.95 E-value=0.69 Score=40.97 Aligned_cols=36 Identities=31% Similarity=0.315 Sum_probs=30.4
Q ss_pred CCCccEEEECCCH-HHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 53 DDQYDVAVVGGGM-VGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 53 ~~~~dVvIVGgG~-aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
-...+|+|||+|- +|..+|..|.+. |.+|+++.|..
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~----g~~V~v~~r~~ 78 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNR----NATVTVCHSKT 78 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhC----CCEEEEEECCc
Confidence 3457899999995 799999999985 88999998763
No 439
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=88.91 E-value=1.6 Score=45.23 Aligned_cols=37 Identities=14% Similarity=0.016 Sum_probs=27.4
Q ss_pred cCcEEEEcccccccCCccccc-----hhhcHHHHHHHHHHHH
Q 010200 393 SKRVVLIGDAAHTVHPLAGQG-----VNLGFGDASTLSRIIA 429 (515)
Q Consensus 393 ~~~v~lvGDAAh~~~P~~G~G-----~n~al~da~~La~~l~ 429 (515)
.++|+.+||++....+..|+. ...|...+..+++.|.
T Consensus 261 ~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~ 302 (427)
T TIGR03385 261 VPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIA 302 (427)
T ss_pred CCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhc
Confidence 478999999998877665532 3567777777777775
No 440
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=88.90 E-value=5.7 Score=40.18 Aligned_cols=41 Identities=20% Similarity=0.318 Sum_probs=33.5
Q ss_pred CCCCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 50 TNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 50 ~~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
+...++.+|||+|.|-+|.++.-.|-.. -++|+|+..+...
T Consensus 50 ~~~~kKk~vVVLGsGW~a~S~lk~ldts----~YdV~vVSPRnyF 90 (491)
T KOG2495|consen 50 KNGGKKKRVVVLGSGWGAISLLKKLDTS----LYDVTVVSPRNYF 90 (491)
T ss_pred CCCCCCceEEEEcCchHHHHHHHhcccc----ccceEEeccccce
Confidence 3455678999999999999998888874 7999999877643
No 441
>PRK04148 hypothetical protein; Provisional
Probab=88.74 E-value=0.4 Score=40.48 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=29.6
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
.+|++||.| .|...|..|++. |++|+.+|.++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~----G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKES----GFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHC----CCEEEEEECCHH
Confidence 579999999 999999999996 999999998773
No 442
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=88.61 E-value=0.44 Score=48.47 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=29.4
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
+|.|||.|..|+.+|..|+. |++|+++|++...
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-----G~~VigvD~d~~k 34 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-----NHEVVALDILPSR 34 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-----CCcEEEEECCHHH
Confidence 59999999999999988885 8999999998753
No 443
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=88.58 E-value=0.6 Score=46.50 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=31.4
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA 93 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~ 93 (515)
...|+|||+|-.|..+|..|+++ |+ +++|+|++..
T Consensus 24 ~~~VlIiG~GglGs~va~~La~a----Gvg~i~lvD~D~v 59 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRA----GIGKLTIADRDYV 59 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc----CCCEEEEEcCCcc
Confidence 46799999999999999999997 76 8999999874
No 444
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=88.45 E-value=0.67 Score=44.35 Aligned_cols=38 Identities=29% Similarity=0.318 Sum_probs=31.9
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
....|+|||+|-.|..+|..|++.|+ -+++|+|.+...
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GV---g~itLiD~D~V~ 66 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGI---GAITLIDMDDVC 66 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCC---CEEEEEeCCEec
Confidence 35689999999999999999999732 489999987643
No 445
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=88.26 E-value=0.49 Score=45.89 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=29.4
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
+|.|||.|.-|.++|..|++. |++|.++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~----g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL----GHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC----CCEEEEEECCH
Confidence 599999999999999999996 89999999865
No 446
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=88.25 E-value=0.57 Score=49.03 Aligned_cols=34 Identities=29% Similarity=0.465 Sum_probs=30.9
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
..+|+|+|+|++|++++..++.. |.+|.++|+++
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~l----GA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSL----GAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC----CCEEEEEeCCH
Confidence 46899999999999999999997 88999999876
No 447
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=88.19 E-value=0.55 Score=46.53 Aligned_cols=32 Identities=38% Similarity=0.512 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
+|.|||+|..|...|..|++. |++|+++++.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~----g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN----GHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC----CCEEEEEECCH
Confidence 699999999999999999996 89999999865
No 448
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.98 E-value=0.5 Score=46.03 Aligned_cols=37 Identities=35% Similarity=0.540 Sum_probs=32.1
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
+..||+|||||-+|.-+|+-|+-. -..|+++|-.+..
T Consensus 353 ~gK~VAVIGGGNSGvEAAIDLAGi----v~hVtllEF~~eL 389 (520)
T COG3634 353 KGKRVAVIGGGNSGVEAAIDLAGI----VEHVTLLEFAPEL 389 (520)
T ss_pred CCceEEEECCCcchHHHHHhHHhh----hheeeeeecchhh
Confidence 457999999999999999999875 4579999988866
No 449
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=87.95 E-value=0.87 Score=45.05 Aligned_cols=37 Identities=19% Similarity=0.407 Sum_probs=31.7
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPAL 94 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~~ 94 (515)
+..+|+|||+|-.|.++|+.|+.. |+ ++.++|.++..
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~----gl~~i~LvDi~~~~ 42 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLK----NLGDVVLFDIVKNI 42 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC----CCCeEEEEeCCCch
Confidence 346899999999999999999885 65 89999988754
No 450
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=87.89 E-value=0.66 Score=48.95 Aligned_cols=35 Identities=29% Similarity=0.558 Sum_probs=31.3
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
.+|.|||+|.-|...|..|+++ |++|+|+|+.+..
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~----G~~V~v~D~~~~~ 39 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA----GIDVAVFDPHPEA 39 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC----CCeEEEEeCCHHH
Confidence 3699999999999999999996 9999999987643
No 451
>PLN02256 arogenate dehydrogenase
Probab=87.73 E-value=0.92 Score=44.50 Aligned_cols=37 Identities=19% Similarity=0.255 Sum_probs=31.6
Q ss_pred CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
.+...+|.|||.|..|-+.|..|++. |.+|.++++..
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~----G~~V~~~d~~~ 69 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQ----GHTVLATSRSD 69 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhC----CCEEEEEECcc
Confidence 34557899999999999999999986 88999998764
No 452
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=87.68 E-value=0.72 Score=45.09 Aligned_cols=35 Identities=29% Similarity=0.379 Sum_probs=31.8
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
...+|+|||.|.+|..++..|++. |.+|+++++++
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~----Ga~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL----GANVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC----CCEEEEEECCH
Confidence 356899999999999999999996 89999999886
No 453
>PRK06223 malate dehydrogenase; Reviewed
Probab=87.52 E-value=0.79 Score=45.11 Aligned_cols=34 Identities=32% Similarity=0.481 Sum_probs=29.7
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA 93 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~ 93 (515)
.+|+|||+|..|.++|..|+.. |+ +|.++|....
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~----~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALK----ELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhC----CCeEEEEEECCCc
Confidence 4799999999999999999986 54 9999998653
No 454
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=87.50 E-value=0.85 Score=41.82 Aligned_cols=36 Identities=25% Similarity=0.405 Sum_probs=31.6
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA 93 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~ 93 (515)
....|+|||.|-.|..+|..|++. |. +++|+|.+..
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~----Gv~~i~lvD~d~v 56 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGA----GVGTIVIVDDDHV 56 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHc----CCCeEEEecCCEE
Confidence 456899999999999999999997 65 8999998763
No 455
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=87.40 E-value=1 Score=44.42 Aligned_cols=36 Identities=33% Similarity=0.527 Sum_probs=30.8
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCc--EEEEEcCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNPA 93 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~--~V~v~E~~~~ 93 (515)
...+|+|||+|-.|.++|+.|+.. |+ .+.++|....
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~----~~~~el~L~D~~~~ 42 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQ----GIADELVIIDINKE 42 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc----CCCCEEEEEeCCCc
Confidence 346899999999999999999986 55 7999998654
No 456
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=87.19 E-value=0.83 Score=45.56 Aligned_cols=36 Identities=28% Similarity=0.416 Sum_probs=31.7
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA 93 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~ 93 (515)
...+|+|||+|-.|..+|..|++. |. +++|+|.+..
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~a----Gvg~i~lvD~D~V 59 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRA----GVGKVTIVDRDYV 59 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc----CCCeEEEEeCCcc
Confidence 346899999999999999999997 66 8999998753
No 457
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=87.13 E-value=0.71 Score=40.34 Aligned_cols=34 Identities=29% Similarity=0.477 Sum_probs=27.6
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
-..|+|+|-|..|-.+|..|+.. |.+|+|.|.+|
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~----Ga~V~V~e~DP 56 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGL----GARVTVTEIDP 56 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHT----T-EEEEE-SSH
T ss_pred CCEEEEeCCCcccHHHHHHHhhC----CCEEEEEECCh
Confidence 45799999999999999999997 99999999987
No 458
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=86.94 E-value=0.82 Score=46.81 Aligned_cols=36 Identities=28% Similarity=0.315 Sum_probs=31.9
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
....|+|+|.|..|..+|..|+.. |.+|+++|+++.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~----Ga~ViV~d~dp~ 246 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGL----GARVIVTEVDPI 246 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC----CCEEEEEcCCch
Confidence 345799999999999999999996 899999998764
No 459
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=86.90 E-value=0.87 Score=44.81 Aligned_cols=34 Identities=32% Similarity=0.491 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCC--cEEEEEcCCCCC
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKH--LSVAIIDSNPAL 94 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G--~~V~v~E~~~~~ 94 (515)
+|+|||+|-+|.++|+.|+.. | ..+.++|+....
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~----g~~~ei~l~D~~~~~ 37 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQ----GIADELVLIDINEEK 37 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhc----CCCCEEEEEeCCcch
Confidence 599999999999999999986 6 589999997643
No 460
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.87 E-value=0.91 Score=45.21 Aligned_cols=42 Identities=31% Similarity=0.418 Sum_probs=37.3
Q ss_pred CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCC
Q 010200 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS 97 (515)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~ 97 (515)
.+..+||||||-|..-..+|.+++|. |.+|+=+|+++..+..
T Consensus 5 lP~~fDvVViGTGlpESilAAAcSrs----G~sVLHlDsn~yYGg~ 46 (547)
T KOG4405|consen 5 LPEEFDVVVIGTGLPESILAAACSRS----GSSVLHLDSNEYYGGN 46 (547)
T ss_pred CchhccEEEEcCCCcHHHHHHHhhhc----CCceEeccCccccCCc
Confidence 34679999999999999999999996 9999999999987543
No 461
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=86.83 E-value=0.85 Score=44.31 Aligned_cols=34 Identities=29% Similarity=0.491 Sum_probs=30.1
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP 92 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~ 92 (515)
..+|+|||+|-+|-++|..|++. |. +|+|++|..
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~----G~~~I~I~nR~~ 161 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTL----GVERLTIFDVDP 161 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc----CCCEEEEECCCH
Confidence 35799999999999999999996 76 799999875
No 462
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=86.68 E-value=0.78 Score=46.08 Aligned_cols=33 Identities=27% Similarity=0.463 Sum_probs=27.0
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCC-cEEEEEcCCCC
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPA 93 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G-~~V~v~E~~~~ 93 (515)
.|+|+|+||.||.++..++.. | .+|+++|+.+.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~----Ga~~Viv~d~~~~ 204 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLL----GASVVIVVDRSPE 204 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHc----CCceEEEeCCCHH
Confidence 699999999999998877776 5 56777777663
No 463
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=86.59 E-value=6 Score=42.62 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=27.5
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCC-cEEEEEcCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNP 92 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G-~~V~v~E~~~ 92 (515)
.-.|+|||||..|+-.|..+.+. | .+|+|+.+.+
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~l----ga~~v~ii~r~~ 301 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRL----GAEEVTIVYRRT 301 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHc----CCCEEEEEEecC
Confidence 45799999999999999888886 5 5688887765
No 464
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=86.52 E-value=0.92 Score=42.19 Aligned_cols=32 Identities=31% Similarity=0.342 Sum_probs=28.6
Q ss_pred cEEEEC-CCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 57 DVAVVG-GGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 57 dVvIVG-gG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
+|.||| +|..|.++|..|++. |++|.++.|++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~----G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA----GNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC----CCEEEEEEcCH
Confidence 699997 699999999999996 89999998765
No 465
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.48 E-value=1.2 Score=43.82 Aligned_cols=37 Identities=35% Similarity=0.421 Sum_probs=30.4
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
+.+|+|||+|-.|.++|+.|+..+. .-.+.|+|....
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~--~~el~LiD~~~~ 39 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGL--ADELVLVDVVED 39 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC--CCEEEEEeCCcc
Confidence 4689999999999999999988632 347999998663
No 466
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=86.32 E-value=0.49 Score=39.72 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=28.2
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
..++|.|||+|-.|.++|..|.+. |+.|.-+..+.
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~a----g~~v~~v~srs 43 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARA----GHEVVGVYSRS 43 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHT----TSEEEEESSCH
T ss_pred CccEEEEECCCHHHHHHHHHHHHC----CCeEEEEEeCC
Confidence 468999999999999999999996 89988775443
No 467
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=86.27 E-value=1.2 Score=43.88 Aligned_cols=38 Identities=32% Similarity=0.419 Sum_probs=35.3
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK 96 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~ 96 (515)
.|||+|+|-|+.=+.++..|+.. |.+|+.+|+++..+.
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~----~k~VlhiD~Nd~YG~ 43 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWD----GKNVLHIDKNDYYGS 43 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhc----CceEEEEeCCCccCc
Confidence 69999999999999999999996 999999999998764
No 468
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.10 E-value=0.84 Score=48.15 Aligned_cols=33 Identities=27% Similarity=0.472 Sum_probs=29.3
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
-.|+|+|.|++|++++..|.+. |.+|++.|..+
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~----G~~v~~~D~~~ 45 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRF----GARPTVCDDDP 45 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHC----CCEEEEEcCCH
Confidence 4699999999999999999885 99999999653
No 469
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=86.02 E-value=2.7 Score=43.31 Aligned_cols=57 Identities=14% Similarity=0.098 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEE-EcCCCc--EEEeeEEEEecCC
Q 010200 170 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKL-DLSDGT--SLYAKLVVGADGG 246 (515)
Q Consensus 170 r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~g~--~~~ad~vV~AdG~ 246 (515)
..++.+.|.+.+++.| ++++.+++|++++. .+..+.. ...+|. ++.+|.||.|+|.
T Consensus 258 G~rL~~aL~~~l~~~G-v~I~~g~~V~~v~~--------------------~~~~V~~v~~~~g~~~~i~AD~VVLAtGr 316 (422)
T PRK05329 258 GLRLQNALRRAFERLG-GRIMPGDEVLGAEF--------------------EGGRVTAVWTRNHGDIPLRARHFVLATGS 316 (422)
T ss_pred hHHHHHHHHHHHHhCC-CEEEeCCEEEEEEE--------------------eCCEEEEEEeeCCceEEEECCEEEEeCCC
Confidence 3478899999998888 99999999999976 2233433 333443 6899999999997
Q ss_pred C
Q 010200 247 K 247 (515)
Q Consensus 247 ~ 247 (515)
.
T Consensus 317 f 317 (422)
T PRK05329 317 F 317 (422)
T ss_pred c
Confidence 4
No 470
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=85.91 E-value=0.81 Score=48.26 Aligned_cols=35 Identities=31% Similarity=0.384 Sum_probs=31.7
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
..|.|||+|.-|...|..|+++ |++|+++|+.+..
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~a----G~~V~l~d~~~e~ 40 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASA----GHQVLLYDIRAEA 40 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhC----CCeEEEEeCCHHH
Confidence 4699999999999999999996 9999999998754
No 471
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.88 E-value=0.93 Score=47.40 Aligned_cols=34 Identities=29% Similarity=0.352 Sum_probs=30.6
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
.+|+|+|.|.+|+++|..|++. |++|++.|+.+.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~----G~~V~~~D~~~~ 48 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKL----GAKVTAFDKKSE 48 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHC----CCEEEEECCCCC
Confidence 3699999999999999999996 999999998753
No 472
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=85.69 E-value=0.83 Score=41.74 Aligned_cols=37 Identities=32% Similarity=0.479 Sum_probs=32.6
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
....|.|||||.-|.-.|.-.+.. |++|.++|++...
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~s----g~~V~l~d~~~~a 46 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATS----GLNVWLVDANEDA 46 (298)
T ss_pred cccceEEEcccccchhHHHHHHhc----CCceEEecCCHHH
Confidence 345799999999999999999996 9999999988753
No 473
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=85.56 E-value=1.2 Score=39.31 Aligned_cols=34 Identities=29% Similarity=0.499 Sum_probs=28.8
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
.+|.|||-|--|...|..|.+. |++|.+|++.+.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~----g~~v~~~d~~~~ 35 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA----GYEVTVYDRSPE 35 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT----TTEEEEEESSHH
T ss_pred CEEEEEchHHHHHHHHHHHHhc----CCeEEeeccchh
Confidence 4699999999999999999996 999999998853
No 474
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=85.50 E-value=1.3 Score=38.00 Aligned_cols=34 Identities=29% Similarity=0.406 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCCC
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPAL 94 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~~ 94 (515)
.|+|||.|-.|..+|..|++. |. +++|+|.+..-
T Consensus 1 ~VliiG~GglGs~ia~~L~~~----Gv~~i~ivD~d~v~ 35 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS----GVGKITLIDFDTVE 35 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC----CCCEEEEEcCCCcC
Confidence 489999999999999999997 65 79999987643
No 475
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=85.45 E-value=1 Score=44.25 Aligned_cols=33 Identities=24% Similarity=0.371 Sum_probs=29.0
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCC--cEEEEEcCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKH--LSVAIIDSNP 92 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G--~~V~v~E~~~ 92 (515)
.+|+|||+|..|.++|..|++. | .+|.++++.+
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~----g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL----GLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc----CCCcEEEEEECCH
Confidence 4799999999999999999986 6 4899998865
No 476
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=85.45 E-value=1.2 Score=42.04 Aligned_cols=38 Identities=24% Similarity=0.276 Sum_probs=31.7
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
...+|+|||+|-.|..+|..|++.|+ -+++|+|.+..-
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gv---g~i~lvD~D~ve 60 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGV---GNLTLLDFDTVS 60 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCC---CEEEEEeCCccc
Confidence 34689999999999999999999843 379999987643
No 477
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=85.22 E-value=1.1 Score=39.95 Aligned_cols=33 Identities=24% Similarity=0.439 Sum_probs=29.3
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCC
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA 93 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~ 93 (515)
+|+|||+|-.|...|..|++. |. +++++|.+..
T Consensus 1 ~VlViG~GglGs~ia~~La~~----Gvg~i~lvD~D~v 34 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS----GVGNLKLVDFDVV 34 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc----CCCeEEEEeCCEE
Confidence 489999999999999999997 66 5999998763
No 478
>PTZ00117 malate dehydrogenase; Provisional
Probab=85.03 E-value=1.4 Score=43.69 Aligned_cols=37 Identities=16% Similarity=0.338 Sum_probs=31.5
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCC-cEEEEEcCCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPAL 94 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G-~~V~v~E~~~~~ 94 (515)
+..+|+|||+|-.|.++|+.|+.. | ..+.++|.+...
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~----~~~~l~L~Di~~~~ 41 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQK----NLGDVVLYDVIKGV 41 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHC----CCCeEEEEECCCcc
Confidence 456899999999999999999986 5 579999987643
No 479
>PLN02529 lysine-specific histone demethylase 1
Probab=84.89 E-value=43 Score=37.18 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=29.3
Q ss_pred cCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHh
Q 010200 393 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIA 433 (515)
Q Consensus 393 ~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~ 433 (515)
.+++.+.||+.+...|-+ +.-|++++...|+.|.+.++
T Consensus 562 ~grL~FAGEaTs~~~pgt---VeGAi~SG~RAA~eIl~~l~ 599 (738)
T PLN02529 562 SGRLFFAGEATTRQYPAT---MHGAFLSGLREASRILHVAR 599 (738)
T ss_pred CCCEEEEEHHHhCCCCeE---eHHHHHHHHHHHHHHHHHHh
Confidence 479999999988877755 44578888888877777654
No 480
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=84.84 E-value=1.2 Score=43.30 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=31.4
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
....|+|||.|-.|.++|..|+.. |.+|++++|..
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~----G~~V~v~~R~~ 184 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSAL----GARVFVGARSS 184 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHC----CCEEEEEeCCH
Confidence 346899999999999999999986 89999999876
No 481
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.82 E-value=1.3 Score=46.14 Aligned_cols=34 Identities=29% Similarity=0.306 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
..|+|+|+|.+|+++|..|++. |.+|.+.|+...
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~----G~~V~~~d~~~~ 39 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKL----GANVTVNDGKPF 39 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHC----CCEEEEEcCCCc
Confidence 4699999999999999999996 999999997653
No 482
>PLN02494 adenosylhomocysteinase
Probab=84.73 E-value=1.2 Score=45.87 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=31.8
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
..-.|+|+|.|..|..+|..|+.. |.+|+++|+++.
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~----Ga~VIV~e~dp~ 288 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAA----GARVIVTEIDPI 288 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC----CCEEEEEeCCch
Confidence 346799999999999999999876 899999998874
No 483
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=84.72 E-value=1.3 Score=41.03 Aligned_cols=36 Identities=22% Similarity=0.431 Sum_probs=31.0
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA 93 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~ 93 (515)
....|+|||+|-.|..+|..|++. |. +++|+|.+..
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~----Gvg~i~lvD~D~v 63 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARS----GVGNLKLVDFDVV 63 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHc----CCCeEEEEeCCEe
Confidence 346899999999999999999997 55 5999998763
No 484
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=84.71 E-value=1.4 Score=41.47 Aligned_cols=40 Identities=25% Similarity=0.386 Sum_probs=32.3
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCC-----C--CCcEEEEEcCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPL-----T--KHLSVAIIDSNPA 93 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~-----~--~G~~V~v~E~~~~ 93 (515)
.+.+|+|||+|-.|..++..|++.|. . .|.+++|+|.+..
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~V 56 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTV 56 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEE
Confidence 56789999999999999999999731 1 1448999998764
No 485
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=84.62 E-value=1.2 Score=41.66 Aligned_cols=34 Identities=24% Similarity=0.469 Sum_probs=30.1
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCc---EEEEEcCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHL---SVAIIDSNP 92 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~---~V~v~E~~~ 92 (515)
..+|+|+|+|-+|...|..|.+. |. ++.|++|..
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~----G~~~~~i~ivdr~g 61 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAA----GAKPENIVVVDSKG 61 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHc----CcCcceEEEEeCCC
Confidence 35799999999999999999997 65 599999985
No 486
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.61 E-value=1.5 Score=45.57 Aligned_cols=35 Identities=23% Similarity=0.238 Sum_probs=31.0
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
..|+|+|.|.+|+++|..|++. |+.|+++|....+
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~----g~~v~~~d~~~~~ 40 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKN----GAEVAAYDAELKP 40 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHC----CCEEEEEeCCCCc
Confidence 4699999999999999999996 9999999976643
No 487
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=84.61 E-value=1.5 Score=40.72 Aligned_cols=33 Identities=18% Similarity=0.312 Sum_probs=28.9
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN 91 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~ 91 (515)
...|+|||||.+++-=+..|.+. |.+|+|+-..
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~----gA~VtVVap~ 57 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKK----GCYVYILSKK 57 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC----CCEEEEEcCC
Confidence 45799999999999999999996 8999999544
No 488
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=84.57 E-value=1.4 Score=41.74 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=31.2
Q ss_pred CCccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCC
Q 010200 54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA 93 (515)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~ 93 (515)
...+|+|||.|..|..+|..|++. |. +++|+|.+..
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~----Gvg~i~lvD~D~v 67 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAA----GVGTLTLVDFDTV 67 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHc----CCCEEEEEcCCEE
Confidence 356899999999999999999998 54 7999998763
No 489
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=84.57 E-value=1.1 Score=43.84 Aligned_cols=32 Identities=34% Similarity=0.535 Sum_probs=28.2
Q ss_pred EEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCC
Q 010200 58 VAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA 93 (515)
Q Consensus 58 VvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~ 93 (515)
|.|||+|-.|..+|..|+.. |+ +|+++|.++.
T Consensus 1 I~IIGaG~vG~~ia~~la~~----~l~eV~L~Di~e~ 33 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK----ELGDVVLLDIVEG 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC----CCcEEEEEeCCCc
Confidence 68999999999999999986 55 9999998864
No 490
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=84.38 E-value=0.96 Score=50.00 Aligned_cols=35 Identities=31% Similarity=0.407 Sum_probs=31.7
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
..|.|||+|.-|...|+.++++ |++|+++|..+..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~----G~~V~l~d~~~~~ 348 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASK----GVPVIMKDINQKA 348 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhC----CCeEEEEeCCHHH
Confidence 4699999999999999999996 9999999988743
No 491
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=84.34 E-value=1 Score=46.92 Aligned_cols=33 Identities=33% Similarity=0.585 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
+|+|||+|..|..+|..|.+. |++|+++|+++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~----g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGE----NNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhC----CCcEEEEECCHH
Confidence 699999999999999999985 899999998764
No 492
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=84.20 E-value=1.4 Score=46.58 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=31.7
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
-.|.|||+|.-|...|..|+++ |++|+++|+.+..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~a----G~~V~l~D~~~e~ 42 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQA----GHTVLLYDARAGA 42 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhC----CCeEEEEeCCHHH
Confidence 4699999999999999999996 9999999998754
No 493
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=83.84 E-value=1.1 Score=43.64 Aligned_cols=33 Identities=21% Similarity=0.445 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (515)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~ 93 (515)
+|.|||.|..|..+|..|++. |++|+++++.+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~----G~~V~~~dr~~~ 33 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA----GYQLHVTTIGPE 33 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC----CCeEEEEcCCHH
Confidence 489999999999999999996 999999998763
No 494
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=83.66 E-value=1.8 Score=39.32 Aligned_cols=34 Identities=29% Similarity=0.372 Sum_probs=29.4
Q ss_pred CccEEEECC-CHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 55 QYDVAVVGG-GMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 55 ~~dVvIVGg-G~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
...|+|+|| |..|..+|..|++. |.+|.++.|+.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~----g~~V~l~~R~~ 62 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLARE----GARVVLVGRDL 62 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC----CCEEEEEcCCH
Confidence 357999997 99999999999985 88999997654
No 495
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=83.51 E-value=1.2 Score=43.70 Aligned_cols=33 Identities=21% Similarity=0.420 Sum_probs=29.0
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
++|.|+|+|-.|...|+.|+++ |.+|+++=|..
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~----g~~V~~~~R~~ 33 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA----GHDVTLLVRSR 33 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC----CCeEEEEecHH
Confidence 3699999999999999999997 77888886665
No 496
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=83.50 E-value=1.1 Score=49.46 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=31.8
Q ss_pred ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (515)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~ 94 (515)
..|.|||||.-|...|+.++++ |++|+++|..+..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~----G~~V~l~d~~~~~ 348 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASK----GTPIVMKDINQHS 348 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhC----CCeEEEEeCCHHH
Confidence 4699999999999999999996 9999999998754
No 497
>PLN02572 UDP-sulfoquinovose synthase
Probab=83.46 E-value=2 Score=44.66 Aligned_cols=35 Identities=37% Similarity=0.524 Sum_probs=29.9
Q ss_pred CCCccEEEECC-CHHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 010200 53 DDQYDVAVVGG-GMVGMALACSLASMPLTKHLSVAIIDSN 91 (515)
Q Consensus 53 ~~~~dVvIVGg-G~aGl~~A~~L~~~~~~~G~~V~v~E~~ 91 (515)
-+...|+|.|| |..|..++..|++. |++|+++++.
T Consensus 45 ~~~k~VLVTGatGfIGs~Lv~~L~~~----G~~V~~~d~~ 80 (442)
T PLN02572 45 SKKKKVMVIGGDGYCGWATALHLSKR----GYEVAIVDNL 80 (442)
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHHC----CCeEEEEecc
Confidence 34457999997 99999999999995 9999999854
No 498
>PRK08328 hypothetical protein; Provisional
Probab=83.40 E-value=1.7 Score=40.82 Aligned_cols=35 Identities=34% Similarity=0.427 Sum_probs=29.7
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
...|+|||+|-.|..+|..|++.|+ -+++|+|.+.
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gv---g~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGV---GRILLIDEQT 61 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC---CEEEEEcCCc
Confidence 4679999999999999999999842 3689998765
No 499
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=83.39 E-value=2.2 Score=39.01 Aligned_cols=34 Identities=35% Similarity=0.321 Sum_probs=30.2
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~ 92 (515)
...|+|+|.|-.|..+|..|.+. |.+|+++|++.
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~----G~~Vvv~D~~~ 61 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEE----GAKLIVADINE 61 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC----CCEEEEEcCCH
Confidence 45799999999999999999996 99999998654
No 500
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=83.27 E-value=2.8 Score=32.34 Aligned_cols=33 Identities=33% Similarity=0.373 Sum_probs=28.9
Q ss_pred CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcC
Q 010200 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDS 90 (515)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~ 90 (515)
..+++|+|.|-.|..+|..|.+. .+.+|.++++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~---~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADE---GGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc---CCCEEEEEcC
Confidence 35799999999999999999996 2678999998
Done!