Query 010203
Match_columns 515
No_of_seqs 193 out of 391
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 22:15:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010203.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010203hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2568 Predicted membrane pro 100.0 7E-114 2E-118 910.2 43.3 483 25-515 16-508 (518)
2 PF06814 Lung_7-TM_R: Lung sev 100.0 3.3E-67 7.1E-72 534.6 34.8 288 170-457 1-295 (295)
3 KOG2569 G protein-coupled seve 100.0 1.1E-39 2.3E-44 331.7 3.9 285 165-462 123-422 (440)
4 PF10192 GpcrRhopsn4: Rhodopsi 99.5 8E-12 1.7E-16 125.6 28.0 243 190-443 2-254 (257)
5 KOG4290 Predicted membrane pro 98.0 0.0003 6.5E-09 73.1 17.4 215 173-395 118-349 (429)
6 PF06664 MIG-14_Wnt-bd: Wnt-bi 86.6 41 0.00089 34.5 28.4 22 364-385 208-229 (298)
7 PF09437 Pombe_5TM: Pombe spec 71.3 1.5 3.3E-05 41.7 0.5 133 166-311 36-182 (256)
8 PF06123 CreD: Inner membrane 70.9 17 0.00038 39.7 8.4 79 165-248 239-330 (430)
9 PRK11715 inner membrane protei 68.0 25 0.00053 38.6 8.8 78 165-248 246-336 (436)
10 PF05297 Herpes_LMP1: Herpesvi 59.6 3 6.5E-05 42.8 0.0 18 431-448 168-185 (381)
11 KOG2569 G protein-coupled seve 57.5 8.9 0.00019 41.1 3.0 82 167-248 296-391 (440)
12 PF11368 DUF3169: Protein of u 50.6 21 0.00046 35.8 4.4 19 389-407 7-25 (248)
13 COG4736 CcoQ Cbb3-type cytochr 49.7 13 0.00029 29.5 2.2 17 441-457 21-37 (60)
14 PF03904 DUF334: Domain of unk 46.0 1.7E+02 0.0036 29.4 9.6 39 370-408 130-168 (230)
15 KOG2568 Predicted membrane pro 41.0 5E+02 0.011 29.3 13.3 26 290-315 308-333 (518)
16 PF13491 DUF4117: Domain of un 38.8 2.8E+02 0.006 25.5 9.7 67 196-262 41-108 (171)
17 PF12725 DUF3810: Protein of u 34.8 1.3E+02 0.0028 31.6 7.4 55 352-408 18-75 (318)
18 PF10160 Tmemb_40: Predicted m 33.3 3.6E+02 0.0078 27.7 9.9 77 350-434 13-89 (261)
19 PTZ00121 MAEBL; Provisional 32.7 28 0.0006 43.1 2.2 83 99-184 56-147 (2084)
20 CHL00043 cemA envelope membran 30.4 54 0.0012 33.5 3.6 40 334-374 208-247 (261)
21 PF09971 DUF2206: Predicted me 29.8 7.2E+02 0.016 26.6 13.4 49 361-409 187-236 (367)
22 PF14089 KbaA: KinB-signalling 29.3 5.4E+02 0.012 25.0 11.0 60 296-362 109-170 (180)
23 KOG1734 Predicted RING-contain 28.2 4.8E+02 0.01 27.1 9.7 47 352-398 89-144 (328)
24 PRK02983 lysS lysyl-tRNA synth 27.7 7.2E+02 0.016 30.7 13.0 32 427-458 201-232 (1094)
25 PF03040 CemA: CemA family; I 27.3 53 0.0011 33.0 2.9 39 335-374 178-216 (230)
26 PRK02507 proton extrusion prot 27.2 2E+02 0.0044 31.4 7.4 41 333-374 368-408 (422)
27 COG3771 Predicted membrane pro 23.5 4.8E+02 0.01 22.5 7.4 30 359-388 49-78 (97)
28 TIGR02908 CoxD_Bacillus cytoch 23.3 5.4E+02 0.012 23.0 9.0 54 241-294 50-103 (110)
29 PF01528 Herpes_glycop: Herpes 22.8 9.9E+02 0.021 25.8 20.3 80 166-251 33-123 (374)
30 PRK10263 DNA translocase FtsK; 21.5 7.3E+02 0.016 31.4 11.2 41 198-238 60-101 (1355)
31 TIGR00739 yajC preprotein tran 20.7 1.4E+02 0.003 25.1 3.8 26 353-378 5-30 (84)
No 1
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=7.4e-114 Score=910.18 Aligned_cols=483 Identities=43% Similarity=0.747 Sum_probs=436.7
Q ss_pred cceeeecCCCCccccCCeEEEecCccccccC--CCCcccccccCCCC--CcceEEeeeEEeeccC-CCCC-CCceEEEEE
Q 010203 25 EASVHEYKGDKFVSKGNAFVVHAGSEGIYSS--FSDAHVNETAANNG--DSYIRFEKITFRRSID-NSNF-SSGLIQALV 98 (515)
Q Consensus 25 ~~s~~~y~~~~f~~~~~~~~~~~~~~G~Ys~--~~~~~~~~~~~~~~--~s~I~f~~v~f~~~~~-~~~~-~~g~v~~vI 98 (515)
..++|.|..++|....|++.++|+++|||+| ++ ..++. .|+|||+++|+.|+++ ++++ +.|.|+++|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~ys~~~~d-------~~~s~~p~~~~~f~~~t~~~~~~~~~~~n~~~~v~~~i 88 (518)
T KOG2568|consen 16 WLSFLSYVYSEFASELNAQHFHGVSEGIYSSFVSD-------LFGSLDPESFIRFDSITLVRTSESADEQNSNGLVEALI 88 (518)
T ss_pred hHhheechhhhhhhhhcceeeeccccccccccHHH-------hcCCCCccccccceeEEEEEccCcccccccccceeeee
Confidence 7899999999999999999999999999999 54 34444 4599999999999987 4433 458899999
Q ss_pred EeeccccccccccCCCceeeecCccccccCCCCCCCEEeCCCCCCCCCCeEEeeeeecccccccCCCceeeecCCCeEEE
Q 010203 99 FEVEDRETIGGSAYGGQRAVCCTADLSKLGVCTQGEVIHRPSTKDPSWPQVFGIKFEVDEVEATLPSNSIQITKTGMYNL 178 (515)
Q Consensus 99 fe~~D~~~iG~~~~~~~~~~cC~~~~~~~g~C~~g~~Ii~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~y~I~ktG~Y~v 178 (515)
|||||+++||++.++|++.||||+++++.|.|++|++|+.|+++||.||++..+.+++.+.+..+++..|+|+|||+||+
T Consensus 89 fe~kd~~~iG~~~~~~e~~~~C~~~~~~~g~c~~~~~i~~~~~~dp~~~~~~~~~~t~~~~e~~m~~~~~~I~ktG~Y~v 168 (518)
T KOG2568|consen 89 FEFKDRNKIGGSDDDGEKLYICTPDLADTGSCKEGEVIYLPNPTDPEWPKLNSVILTFNDAEVGMSPPAYPIKKTGYYCV 168 (518)
T ss_pred eehhhhhccCCcCCCCceEEecCHhHHhcCCcCCCceEEecCCCCCCcccccceeecccccccCCCCceEEeccCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999988878889999999999999999
Q ss_pred EEEeecCCCcceEEEEEEEEECCCCCCCCCCcCchhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Q 010203 179 YFIHCDLNLKDLVVEGKSIWKNPTGYLPGRMAPLMNFYGFMSLAFVILGLFWFSQYARFWREVLHLQNCITLVITLGMFE 258 (515)
Q Consensus 179 ~~~~C~~~~~~~~~~g~v~~~N~~GyLpa~e~pll~fY~~msi~Y~~l~i~W~~~~~k~r~~ll~Iq~~I~avi~l~~le 258 (515)
++..|+++.++.+.+|+|+||||||||||+++|+||||++|+++|.+++++|+++|+|||||++|||+||++||+|+|+|
T Consensus 169 ~~~~~~~s~~~~~~~~~v~wkNpyGyL~a~~~Plm~fy~~m~laYvllgllW~~~~~~y~~diL~lQ~~I~~Vi~lgm~E 248 (518)
T KOG2568|consen 169 YFISCDSSLESYKATGSVNWKNPYGYLPASDAPLMPFYGFMCLAYVLLGLLWFFQCAQYWHDILPLQKYITAVIALGMAE 248 (518)
T ss_pred EEEeecCccccccccceEEEECCCCCcChhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCccceeeeehHHHHHHHHHHHHHHHh
Q 010203 259 MALWYFEYAEFNETGVRPMGITAWAVTFGTVKRTVARVIILMVAMGYGVVRPTLGGLTSKVIMLGGTFFLASEVLELVEN 338 (515)
Q Consensus 259 ~~~~~~~Y~~~N~~G~~~~~~~v~~~i~~a~k~tlsf~LlLlVslGYGvVkp~L~~~~~kv~~l~v~yfi~s~~~~i~~~ 338 (515)
++++|.+|++.|.+|.+|++.++|+++++|+|+|++|+|+|+||||||||||+||+.+.|+..++++|+++++++++++.
T Consensus 249 ~av~y~~y~~~N~tG~~~~~~~~~a~i~sa~K~Tlsr~LlLIVSlGYGIVkP~Lg~~l~rv~~ig~~~~i~s~i~~l~~~ 328 (518)
T KOG2568|consen 249 TAVFYSEYANFNSTGMSPKVYTVFASILSAIKKTLSRLLLLIVSLGYGIVKPTLGGTLLRVCQIGVIYFIASEILGLARV 328 (518)
T ss_pred HHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcceEecCcchHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCcccchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 010203 339 VGAVSDLSGKARLFLVLPVAILDAFFILWIFTSLSSTLNKLQARRMMTKLDIYRKFTNALAVAVIVSVGWICYELYFKSN 418 (515)
Q Consensus 339 ~g~~~d~s~~~~Lf~~lpla~~~~vf~~WI~~sL~~Ti~~L~~~rq~~KL~mYr~f~~~lv~~V~~s~i~i~~~~~~~~~ 418 (515)
+|+++|.++.+++|.++|+|+++++|++|||.||++|+|+||.|||++||+|||||.++++++|+++++|++++.++...
T Consensus 329 ~g~~se~~~~~~lf~~ip~ai~d~~f~~wIF~SL~~Tlk~Lr~rRn~vKl~lYr~F~n~l~~~Vvas~~~i~~~~~~~~~ 408 (518)
T KOG2568|consen 329 IGNISELSSLLILFAALPLAILDAAFIYWIFISLAKTLKKLRLRRNIVKLSLYRKFTNTLAFSVVASFAFILVETIFYSI 408 (518)
T ss_pred hcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999988888999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred ccccchhhhHhHHHHHHHHHHHHHHHHhhhhcccCCCCCccccccccccccccccccccccCCCCccccc-cccCCCCCC
Q 010203 419 DIYNEKWQNAWIIPAFWQILSFSLLCVICALWAPSQNSMRYAYSEDVNEEFDKDETSLTLIKPSPMASKD-VRSVPEPRP 497 (515)
Q Consensus 419 ~~~~~~Wk~~W~i~~~w~~L~f~~l~~i~~lWRPt~nn~~~a~s~e~~~d~d~ed~~~sl~~~~~~~~~~-~~~~~~~~~ 497 (515)
++++++||.+|+++++|++++|.++++||+|||||+||+|||+|++.+||+||+| ..++...+...++. .+..+.+..
T Consensus 409 ~~~~~~Wk~~Wv~~a~W~~l~~~iLvvI~~LWrPS~nn~ryA~s~l~~d~~ee~~-~~~~~~~~~~~~~~~~~~~k~~~~ 487 (518)
T KOG2568|consen 409 MSCNKDWKERWVDTAFWPLLFFLILVVIMFLWRPSQNNQRYAFSPLSDDDEEEEE-EESLDLLESLTEGAKSRADKRKSL 487 (518)
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhh-hhhhhhcccccccCcccccccccc
Confidence 7899999999999999999999999999999999999999999998877665544 22333222111111 111111111
Q ss_pred cc---CCCCCCCCCccccccC
Q 010203 498 VQ---SNNGALNGDLEEDKRE 515 (515)
Q Consensus 498 ~~---~~~~~~~~~~~~~~~~ 515 (515)
.+ ....+.+||+||+|||
T Consensus 488 ~~~~~~~~~~~~dDle~~~~~ 508 (518)
T KOG2568|consen 488 GKADPNKALNFEDDLEEVEEE 508 (518)
T ss_pred ccccccchhchhhhhhccccc
Confidence 11 1124557888999986
No 2
>PF06814 Lung_7-TM_R: Lung seven transmembrane receptor; InterPro: IPR009637 This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.; GO: 0016021 integral to membrane
Probab=100.00 E-value=3.3e-67 Score=534.61 Aligned_cols=288 Identities=38% Similarity=0.734 Sum_probs=271.4
Q ss_pred ecCCCeEEEEEEeecCCC----cceEEEEEEEEECCCCCCCCCCcCchhHHHHHHHHHHHHHHHHHHHHhhhccchhHHH
Q 010203 170 ITKTGMYNLYFIHCDLNL----KDLVVEGKSIWKNPTGYLPGRMAPLMNFYGFMSLAFVILGLFWFSQYARFWREVLHLQ 245 (515)
Q Consensus 170 I~ktG~Y~v~~~~C~~~~----~~~~~~g~v~~~N~~GyLpa~e~pll~fY~~msi~Y~~l~i~W~~~~~k~r~~ll~Iq 245 (515)
|+|||+||+++++|+|+. ++.+++|+++|+||||||||+|+|++|+|++|+++|++++++|++.++||||+++|||
T Consensus 1 i~~~G~Y~~~~~~C~~~~~~~~~~~~~~~~i~~~N~~gyL~a~~~pl~~~y~~~~i~y~~~~~~W~~~~~~~~~~~~~ih 80 (295)
T PF06814_consen 1 ITKTGYYCVFFANCNPSTSSSNSNISFEGSITFKNPYGYLPAGEYPLPPFYGVMSIVYAVLLIIWLFLCFKNRKSVLPIH 80 (295)
T ss_pred CCCceEEEEEEEEcCCccccCCcceEEEEEEEEECCCCCCChhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHH
Confidence 689999999999998763 6789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCccceeeeehHHH
Q 010203 246 NCITLVITLGMFEMALWYFEYAEFNETGVRPMGITAWAVTFGTVKRTVARVIILMVAMGYGVVRPTLGGLTSKVIMLGGT 325 (515)
Q Consensus 246 ~~I~avi~l~~le~~~~~~~Y~~~N~~G~~~~~~~v~~~i~~a~k~tlsf~LlLlVslGYGvVkp~L~~~~~kv~~l~v~ 325 (515)
++|+++++++++|+++++.+|++.|.+|.++.++.+++++++++|++++|+++|+||+|||++||+|+++++|+++++++
T Consensus 81 ~~i~~vl~l~~~~~~~~~~~y~~~n~~G~~~~~~~~~~~i~~~~k~~~~~~llllis~Gygivkp~L~~~~~~v~~l~i~ 160 (295)
T PF06814_consen 81 YLILAVLILKMLELAFWFIYYHYINKTGTPSEGWMIFAYIFSALKRTLSFFLLLLISLGYGIVKPSLGRREKKVLMLVIL 160 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcchheeccccCcceeehhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCccc--chhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 010203 326 FFLASEVLELVENVGAVSDLSGK--ARLFLVLPVAILDAFFILWIFTSLSSTLNKLQARRMMTKLDIYRKFTNALAVAVI 403 (515)
Q Consensus 326 yfi~s~~~~i~~~~g~~~d~s~~--~~Lf~~lpla~~~~vf~~WI~~sL~~Ti~~L~~~rq~~KL~mYr~f~~~lv~~V~ 403 (515)
|++++.+..+.+..+...+.+.. ..+++++|++++++++++||+++|++|+++||+|||++||+|||+|+++++++++
T Consensus 161 ~~v~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~wi~~sL~~t~~~lk~~~q~~KL~lyr~f~~~li~~v~ 240 (295)
T PF06814_consen 161 YFVFSNIAYIIREESSPSDSSYASWNFIFFLLPLCILDLFFIVWIFRSLSKTIRDLKARRQTAKLSLYRRFYNVLIAYVV 240 (295)
T ss_pred HHHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888887776655554332 4678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-hhhhhcccccchhhhHhHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 010203 404 VSVGWICYE-LYFKSNDIYNEKWQNAWIIPAFWQILSFSLLCVICALWAPSQNSM 457 (515)
Q Consensus 404 ~s~i~i~~~-~~~~~~~~~~~~Wk~~W~i~~~w~~L~f~~l~~i~~lWRPt~nn~ 457 (515)
++++++.++ +.++..+..+++||++|+.+++|++++|+++++|+|+|||++|||
T Consensus 241 ~~~i~~~~~~~~~~~~~~~~~~W~~~W~~~~~~~~l~~~~~~~i~~lwRPs~~n~ 295 (295)
T PF06814_consen 241 FSRIFVVLSSIIFNTSDSIEKPWKYQWFIEAFWELLYFVFLVAIMYLWRPSENNQ 295 (295)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHhHHHHHHHHHHHHHHHHHHheeCCCCCCc
Confidence 999998877 566777788999999999999999999999999999999999997
No 3
>KOG2569 consensus G protein-coupled seven transmembrane receptor [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-39 Score=331.65 Aligned_cols=285 Identities=18% Similarity=0.284 Sum_probs=245.2
Q ss_pred CceeeecCCCeEEEEEEeecCCCcceEEEEEEEEEC---CCC---CCCCCCcCchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 010203 165 SNSIQITKTGMYNLYFIHCDLNLKDLVVEGKSIWKN---PTG---YLPGRMAPLMNFYGFMSLAFVILGLFWFSQYARFW 238 (515)
Q Consensus 165 ~~~y~I~ktG~Y~v~~~~C~~~~~~~~~~g~v~~~N---~~G---yLpa~e~pll~fY~~msi~Y~~l~i~W~~~~~k~r 238 (515)
..+|+++.+|.|.++|+||.|. ...++..+++..| |+| ||||++++++.+|..|+++|+..++.|.++++|++
T Consensus 123 ~~~~~~kd~~~y~l~f~nc~~~-~~~sm~V~~~~~~~~~p~g~~dyl~ag~~~Lp~ly~~~sl~Yl~~~v~w~~l~~~sk 201 (440)
T KOG2569|consen 123 SHHYPLKDPGQYSLFFANCVPE-TKGSMVVRVEMYNLLEPNGSRDYLSAGETSLPRLYFDFSLLYLDFLVFWCYLLKQSK 201 (440)
T ss_pred eEEecCCCCceEEEEEeecccc-ccceEEEEEEeeeccCCCCcccccccccccCchhHHHHHHHHHHhhhheeeeEeech
Confidence 3589999999999999999876 5667777777776 677 99999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcccee
Q 010203 239 REVLHLQNCITLVITLGMFEMALWYFEYAEFNETGVRPMGITAWAVTFGTVKRTVARVIILMVAMGYGVVRPTLGGLTSK 318 (515)
Q Consensus 239 ~~ll~Iq~~I~avi~l~~le~~~~~~~Y~~~N~~G~~~~~~~v~~~i~~a~k~tlsf~LlLlVslGYGvVkp~L~~~~~k 318 (515)
+.+++||++|.+++.++.+..++...+|+++.++| .++||.+..+|++++|+.+.|.++.+|++||+++||.|.+++||
T Consensus 202 ~~v~rIh~lma~lV~lKsl~l~~~al~k~~~sk~g-~~~gw~vl~yI~~~lkg~llf~tivligTgwSflk~~l~dkekk 280 (440)
T KOG2569|consen 202 SVVYRIHDLMAVLVFLKSLSLICHALNKHYVSKTG-TVHGWAVLFYIFHFLKGVLLFTTIVLIGTGWSFLKPKLQDKEKK 280 (440)
T ss_pred HHHHHHHHHHHHHHhHcchHHHhhccceEEEEecC-ceeeeeehhhHHHHHhhhhheeEEEeeccCceeechhhccccce
Confidence 99999999999999999999999999999999999 48999999999999999999999999999999999999999999
Q ss_pred eeehH----HHHHHHHHHHHHHHhhcc--ccCCcccchhHHhhHHHHHHHHH--HHHHHHHHHHHHH-HHHHHhhhhhHH
Q 010203 319 VIMLG----GTFFLASEVLELVENVGA--VSDLSGKARLFLVLPVAILDAFF--ILWIFTSLSSTLN-KLQARRMMTKLD 389 (515)
Q Consensus 319 v~~l~----v~yfi~s~~~~i~~~~g~--~~d~s~~~~Lf~~lpla~~~~vf--~~WI~~sL~~Ti~-~L~~~rq~~KL~ 389 (515)
+++.. ++.++++++.+ +.|. .+..+|. .+|++.++.||.++. ++|.+++|++|-+ +.++.++.+||.
T Consensus 281 v~miviplqvlania~Iv~d---Ete~~~q~~~tw~-~if~lvd~~cc~ai~fpIvwSi~~L~E~s~tDgkaa~nl~kL~ 356 (440)
T KOG2569|consen 281 VLMIVIPLQVLANIASIVTD---ETEPLTQDWVTWN-QIFLLVDLKCCCAILFPIVWSIRHLRETSKTDGKAAANLIKLP 356 (440)
T ss_pred EEEEEecHHHHHHhHheeec---CCCcchhhhhhhh-heeeeecceeeeEEeeeeeeehhhhhhccCCcchhhcCcccch
Confidence 99853 34444444321 1111 1122232 456666777777654 8999999999887 699999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccchhhhHhHHHHHHHHHHHHHHHHhhhhcccCCCCCccccc
Q 010203 390 IYRKFTNALAVAVIVSVGWICYELYFKSNDIYNEKWQNAWIIPAFWQILSFSLLCVICALWAPSQNSMRYAYS 462 (515)
Q Consensus 390 mYr~f~~~lv~~V~~s~i~i~~~~~~~~~~~~~~~Wk~~W~i~~~w~~L~f~~l~~i~~lWRPt~nn~~~a~s 462 (515)
+||+||.++++|+++|++.+.. ++. ....|++|+..++.++.++++|+.++|+|||.+.|+|+...
T Consensus 357 lfrqfyi~vi~yiyftrIvv~~---l~~----~~~fky~W~~~~a~E~at~aFy~l~gykFRP~~~~~Yf~vd 422 (440)
T KOG2569|consen 357 LFRQFYIVVIGYIYFTRIVVFA---LKT----IAVFKYQWLSFAAEEMATLAFYVLMGYKFRPVESNEYFVVD 422 (440)
T ss_pred HHHHHHhhhhhhhhhhhhhhhh---hhh----ccceeeeeHHHHHHHHHHHHHHhhheeeeeecccCCccccC
Confidence 9999999999999999987642 333 35789999999999999999999999999999999999863
No 4
>PF10192 GpcrRhopsn4: Rhodopsin-like GPCR transmembrane domain; InterPro: IPR019336 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). This region of 270 amino acids is the seven transmembrane alpha-helical domains included within five GPCRRHODOPSN4 motifs of a G-protein-coupled-receptor (GPCR) protein, conserved from nematodes to humans [].
Probab=99.53 E-value=8e-12 Score=125.55 Aligned_cols=243 Identities=14% Similarity=0.150 Sum_probs=169.8
Q ss_pred eEEEEEEEEECCC----CCCCCCCcCchhHHHHHHHHHHHHHHHHHH--HHhhhccchhHHHHHHHHHHHHHHHHHHHHH
Q 010203 190 LVVEGKSIWKNPT----GYLPGRMAPLMNFYGFMSLAFVILGLFWFS--QYARFWREVLHLQNCITLVITLGMFEMALWY 263 (515)
Q Consensus 190 ~~~~g~v~~~N~~----GyLpa~e~pll~fY~~msi~Y~~l~i~W~~--~~~k~r~~ll~Iq~~I~avi~l~~le~~~~~ 263 (515)
.+++.++++.|++ .|+|++|.+.+++|.++.++|.++.++-.. ...+.|+..-++.+.+++.+++..+..++..
T Consensus 2 ~~~~y~i~l~N~~~~~~~hfS~de~gi~~~~~~~~~~y~vl~~~~~~~~~~l~~~~~~h~~~~l~~~~l~l~~~s~~l~~ 81 (257)
T PF10192_consen 2 LKIEYEIWLTNGGDFWTSHFSADEQGILEIYLLFLLLYIVLSIISIYSIQSLKKRGLMHPVYKLFSAALLLQFLSLLLNL 81 (257)
T ss_pred CceEEEEEEEeCCCccccccChhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999996 699999999999999999999999888443 3456677888999999999999888888755
Q ss_pred HHHhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCccc-eeeeehHHHHHHHHHHHHHHHhhccc
Q 010203 264 FEYAEFNETGVRPMGITAWAVTFGTVKRTVARVIILMVAMGYGVVRPTLGGLT-SKVIMLGGTFFLASEVLELVENVGAV 342 (515)
Q Consensus 264 ~~Y~~~N~~G~~~~~~~v~~~i~~a~k~tlsf~LlLlVslGYGvVkp~L~~~~-~kv~~l~v~yfi~s~~~~i~~~~g~~ 342 (515)
.+|..+..+|.......+.+.++.++.+.+...+++++|.||.+.|++++... .+...+.+++.+...++.+.++.-..
T Consensus 82 ih~~~ya~nG~G~~~l~~~g~i~~~~s~~~~~lLLllla~GwTi~~~~~s~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~ 161 (257)
T PF10192_consen 82 IHYIVYAYNGVGIPFLKVLGQIFDILSQILFLLLLLLLAKGWTITRSRLSQSNSVKLIVFIILYVVLQVILFIWENRFYF 161 (257)
T ss_pred HHHHHHHccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHcccccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 55555555666556789999999999999999999999999999999998643 34445566666666666555222111
Q ss_pred c--CCcccchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhcc
Q 010203 343 S--DLSGKARLFLVLPVAILDAFFILWIFTSLSSTLNKLQARRMMTKLDIYRKFTNALAVAVIVS-VGWICYELYFKSND 419 (515)
Q Consensus 343 ~--d~s~~~~Lf~~lpla~~~~vf~~WI~~sL~~Ti~~L~~~rq~~KL~mYr~f~~~lv~~V~~s-~i~i~~~~~~~~~~ 419 (515)
+ +......-....++..+-.+..+|...++.+|++ ++|+..|.+.|.+|...-....+.- ++.+ .+..
T Consensus 162 d~~~~~~~y~s~pGy~li~lri~~~~~F~~~~~~t~~---~~~~~~k~~Fy~~f~~~~~lWFl~~Pv~~~-----ia~~- 232 (257)
T PF10192_consen 162 DPHSYLYFYDSWPGYILIALRIVLAIWFIYGLYQTIS---KEKDPEKRKFYLPFGIIFSLWFLSLPVIVI-----IAHF- 232 (257)
T ss_pred CcccceeecccHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHh-
Confidence 1 1111112244556667777888898888888753 4556689999999976554333322 2211 1121
Q ss_pred cccchhhhHhHHHHHHHHHHHHHH
Q 010203 420 IYNEKWQNAWIIPAFWQILSFSLL 443 (515)
Q Consensus 420 ~~~~~Wk~~W~i~~~w~~L~f~~l 443 (515)
+++.||.+. +..+...+.++.+
T Consensus 233 -v~~~~R~kv-v~~~~~~~~~~~~ 254 (257)
T PF10192_consen 233 -VDPWVREKV-VTGGNLLIQFIAY 254 (257)
T ss_pred -ccHHHHHHH-HHHHHHHHHHHHH
Confidence 456677775 4455445545433
No 5
>KOG4290 consensus Predicted membrane protein [Function unknown]
Probab=98.01 E-value=0.0003 Score=73.12 Aligned_cols=215 Identities=14% Similarity=0.124 Sum_probs=132.4
Q ss_pred CCeEEEEEEeecC-----CCcceEEEEEEEEECCC-------CC-CCCCCcCchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010203 173 TGMYNLYFIHCDL-----NLKDLVVEGKSIWKNPT-------GY-LPGRMAPLMNFYGFMSLAFVILGLFWFSQYARFWR 239 (515)
Q Consensus 173 tG~Y~v~~~~C~~-----~~~~~~~~g~v~~~N~~-------Gy-Lpa~e~pll~fY~~msi~Y~~l~i~W~~~~~k~r~ 239 (515)
+-.+.|..+.|.+ +....++...+...||+ +| .+.+|-.+.-+|..|.++|+++.++.+...+ |
T Consensus 118 p~~W~v~l~acytCqw~dss~~ntI~ydi~LtNPn~ea~~pft~~fS~deqnlie~fll~llvY~vL~~iq~~av~---r 194 (429)
T KOG4290|consen 118 PQTWHVFLAACYTCQWDDSSQMNTIGYDILLTNPNIEAIDPFTLPFSLDEQNLIEAFLLMLLVYMVLVLIQGLAVT---R 194 (429)
T ss_pred cceeeeeeeecccccccCcCccccccceEEEeCCcccccCccccceeeccchHHHHHHHHHHHHHHHHHHHHHHHh---c
Confidence 4466666666642 11233555666667763 45 8999999999999999999999999888777 4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCccceee
Q 010203 240 EVLHLQNCITLVITLGMFEMALWYFEYAEFNETGVRPMGITAWAVTFGTVKRTVARVIILMVAMGYGVVRPTLGGLTSKV 319 (515)
Q Consensus 240 ~ll~Iq~~I~avi~l~~le~~~~~~~Y~~~N~~G~~~~~~~v~~~i~~a~k~tlsf~LlLlVslGYGvVkp~L~~~~~kv 319 (515)
+..|.|...++.+.-.++...+.-++|-.+-++|....-....+.++.-...+-...|++..++||.|+|+.-+.. +++
T Consensus 195 km~P~~~il~vlvtm~lv~~~licanllhfa~dG~Gep~~~~aaEvldisS~~~~~lLLi~LakGW~i~r~~~s~~-~wd 273 (429)
T KOG4290|consen 195 KMLPSWLILLVLVTMFLVQAGLICANLLHFAKDGFGEPKFFDAAEVLDISSSLPAYLLLIWLAKGWVIFRVAASMS-RWD 273 (429)
T ss_pred ccCchHhHHHHHHHHHHHHHHHHHHHHHHHhhccCCceeecCHHHHHHHHhhHHHHHHHHHHhccceEEeehhhcc-ccc
Confidence 4778888777777666665555444444444455433234445677777888888999999999999999987653 222
Q ss_pred eeh-HHHHHHHHHHHHHHHhhcc---ccCCcccchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 010203 320 IML-GGTFFLASEVLELVENVGA---VSDLSGKARLFLVLPVAILDAFFILWIFTSLSSTLNKLQARRMMTKLDIYRKFT 395 (515)
Q Consensus 320 ~~l-~v~yfi~s~~~~i~~~~g~---~~d~s~~~~Lf~~lpla~~~~vf~~WI~~sL~~Ti~~L~~~rq~~KL~mYr~f~ 395 (515)
..- .+.+.....++.+-+.... ..|... ..-+...-+.+++.++-+|.+.-+.++++. .+.+.|...|-+|.
T Consensus 274 s~m~wvf~~~f~~vL~~W~~tev~dv~hd~d~-y~nwpG~~viilRii~a~wflielr~~ik~---EhStkK~eFl~hfg 349 (429)
T KOG4290|consen 274 SPMKWVFFTSFVFVLTPWFWTEVIDVMHDNDC-YNNWPGEVVIILRIIVAFWFLIELRVPIKL---EHSTKKCEFLSHFG 349 (429)
T ss_pred cchhhhhhhhhhhheeehhhcCceeeeechhh-hhccchHHHHHHHHHHHHHHHHHeeeehhh---hhHHHHHHHHHHhc
Confidence 221 2222221111111111111 011000 011223344567888889998888887754 23445666666654
No 6
>PF06664 MIG-14_Wnt-bd: Wnt-binding factor required for Wnt secretion
Probab=86.63 E-value=41 Score=34.54 Aligned_cols=22 Identities=9% Similarity=0.514 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 010203 364 FILWIFTSLSSTLNKLQARRMM 385 (515)
Q Consensus 364 f~~WI~~sL~~Ti~~L~~~rq~ 385 (515)
+++|+...+-++.++++.++..
T Consensus 208 Y~l~ll~li~rs~~~i~~~~~~ 229 (298)
T PF06664_consen 208 YFLYLLFLIIRSFSEIRNKRYF 229 (298)
T ss_pred HHHHHHHHHHHHHHHhccccHH
Confidence 7789989888888888866654
No 7
>PF09437 Pombe_5TM: Pombe specific 5TM protein; InterPro: IPR018291 This entry represents a group of proteins containing five transmembrane regions. These proteins are found exclusively in Schizosaccharomyces pombe (Fission yeast).
Probab=71.28 E-value=1.5 Score=41.71 Aligned_cols=133 Identities=18% Similarity=0.178 Sum_probs=78.1
Q ss_pred ceeeecCCCeEEEEEEeecCCC--cceEEEEEEE---EECC-----CCCCCCCCcCchhHHHHHHHHHHHHHHHHHHHHh
Q 010203 166 NSIQITKTGMYNLYFIHCDLNL--KDLVVEGKSI---WKNP-----TGYLPGRMAPLMNFYGFMSLAFVILGLFWFSQYA 235 (515)
Q Consensus 166 ~~y~I~ktG~Y~v~~~~C~~~~--~~~~~~g~v~---~~N~-----~GyLpa~e~pll~fY~~msi~Y~~l~i~W~~~~~ 235 (515)
...-|++||-||+..-.-.-+. -++++.|-.. =.|. ..|.+..|++-.- +.+.+|.+-|.
T Consensus 36 ~~i~I~~T~sYCvAar~mtmdgaefnldlmgysvsedqinndeigiwnyisvaemggvl----------lflsywiwtcl 105 (256)
T PF09437_consen 36 KTILINETGSYCVAARPMTMDGAEFNLDLMGYSVSEDQINNDEIGIWNYISVAEMGGVL----------LFLSYWIWTCL 105 (256)
T ss_pred EEEEecCccceEEEEeeeecccceecccccccccchhhcCccceeeeeEEEhhhcCcee----------ehhHHHHHHHH
Confidence 4567899999999875432111 1223322111 1122 2477766665432 23457999999
Q ss_pred hhccchhHHHHHHHHHHHHHHH-HHHHH-HHHHhhhhccCCCcchHHH--HHHHHHHHHHHHHHHHHHHHhccccccccc
Q 010203 236 RFWREVLHLQNCITLVITLGMF-EMALW-YFEYAEFNETGVRPMGITA--WAVTFGTVKRTVARVIILMVAMGYGVVRPT 311 (515)
Q Consensus 236 k~r~~ll~Iq~~I~avi~l~~l-e~~~~-~~~Y~~~N~~G~~~~~~~v--~~~i~~a~k~tlsf~LlLlVslGYGvVkp~ 311 (515)
.+.+-++|-|+-+..-|++..+ ..+-. .-+|..- ..- -.--.+ ..-+...+|.-+-|+.++.-++|.|++|..
T Consensus 106 hfskiifpaqkviClYIflfalnqtlqecieeyvFs-sec--ikyrqFysvyeiidFlRTnfyrlfviycalgfgitRTv 182 (256)
T PF09437_consen 106 HFSKIIFPAQKVICLYIFLFALNQTLQECIEEYVFS-SEC--IKYRQFYSVYEIIDFLRTNFYRLFVIYCALGFGITRTV 182 (256)
T ss_pred hHhheecccceEEEEEeehhhcChhHHHHHHHheee-eEE--EEecccccHHHHHHHHHhhhhhhheeeecccccceeee
Confidence 9999999999977554433322 22221 1122110 000 001122 346788999999999999999999998744
No 8
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=70.95 E-value=17 Score=39.66 Aligned_cols=79 Identities=14% Similarity=0.141 Sum_probs=44.0
Q ss_pred CceeeecCCCeEEEEEEeecCCC------------cceEEEEEEEEECC-CCCCCCCCcCchhHHHHHHHHHHHHHHHHH
Q 010203 165 SNSIQITKTGMYNLYFIHCDLNL------------KDLVVEGKSIWKNP-TGYLPGRMAPLMNFYGFMSLAFVILGLFWF 231 (515)
Q Consensus 165 ~~~y~I~ktG~Y~v~~~~C~~~~------------~~~~~~g~v~~~N~-~GyLpa~e~pll~fY~~msi~Y~~l~i~W~ 231 (515)
|.+.+|+++|.---+-.+--+.. ........|++.+| +.|.-.... .=|++|.|+-.++. +++
T Consensus 239 P~~r~i~~~GF~A~W~v~~l~r~~~q~~~~~~~~~~~~~~~~gV~l~~Pvd~Y~~~~Ra---~KYgiLFI~LTF~~-ffl 314 (430)
T PF06123_consen 239 PEEREITDSGFSAQWKVSHLARNYPQQWASDDNCPDLSASAFGVDLIEPVDHYQKSERA---VKYGILFIGLTFLA-FFL 314 (430)
T ss_pred CCCCccCCCCceeEeeehhhccchhhHhhhcccCcccccCceeEEEeccccHHHHHHHH---HHHHHHHHHHHHHH-HHH
Confidence 56788888888766644321110 01123456777777 445444333 23666666644332 334
Q ss_pred HHHhhhccchhHHHHHH
Q 010203 232 SQYARFWREVLHLQNCI 248 (515)
Q Consensus 232 ~~~~k~r~~ll~Iq~~I 248 (515)
+-..+ ++.+.|+||.+
T Consensus 315 fE~~~-~~~iHpiQY~L 330 (430)
T PF06123_consen 315 FELLS-KLRIHPIQYLL 330 (430)
T ss_pred HHHHh-cCcccHHHHHH
Confidence 44444 45599999988
No 9
>PRK11715 inner membrane protein; Provisional
Probab=67.95 E-value=25 Score=38.57 Aligned_cols=78 Identities=12% Similarity=0.133 Sum_probs=43.6
Q ss_pred CceeeecCCCeEEEEEE------------eecCCCcceEEEEEEEEECC-CCCCCCCCcCchhHHHHHHHHHHHHHHHHH
Q 010203 165 SNSIQITKTGMYNLYFI------------HCDLNLKDLVVEGKSIWKNP-TGYLPGRMAPLMNFYGFMSLAFVILGLFWF 231 (515)
Q Consensus 165 ~~~y~I~ktG~Y~v~~~------------~C~~~~~~~~~~g~v~~~N~-~GyLpa~e~pll~fY~~msi~Y~~l~i~W~ 231 (515)
|.+.+|++.|.--=+-. +|++. ....-...|.|.+| +.|.-....- =|+++.|+-.++ ++++
T Consensus 246 P~~R~It~~GF~A~W~is~l~r~~~q~~~~~~~~-~~~~~~~~V~~~~PVd~Y~~~~RA~---KYgiLFI~LTF~-~fFl 320 (436)
T PRK11715 246 PAEREISESGFQAQWQVSHLARNYPQVFASGQDG-NLNLPAFGVSLIDPVDQYQKTERAV---KYAILFIALTFA-AFFL 320 (436)
T ss_pred CCCCeeCCCCeeeEeechhhcCchhhhhhhcccc-ccccceeEEEEeccccHHHHHHHHH---hHHHHHHHHHHH-HHHH
Confidence 45688999887654432 23211 00124556777777 4555444333 366665553333 3344
Q ss_pred HHHhhhccchhHHHHHH
Q 010203 232 SQYARFWREVLHLQNCI 248 (515)
Q Consensus 232 ~~~~k~r~~ll~Iq~~I 248 (515)
+-..+ +..+.|+||.+
T Consensus 321 fE~~~-~~~iHpiQYlL 336 (436)
T PRK11715 321 FELLK-KLRIHPVQYLL 336 (436)
T ss_pred HHHhc-CceecHHHHHH
Confidence 44444 44599999987
No 10
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=59.62 E-value=3 Score=42.82 Aligned_cols=18 Identities=17% Similarity=0.584 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 010203 431 IPAFWQILSFSLLCVICA 448 (515)
Q Consensus 431 i~~~w~~L~f~~l~~i~~ 448 (515)
..-+|.+|+.++++.+-+
T Consensus 168 ~dL~WL~LFlaiLIWlY~ 185 (381)
T PF05297_consen 168 VDLYWLLLFLAILIWLYV 185 (381)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345787777666654443
No 11
>KOG2569 consensus G protein-coupled seven transmembrane receptor [Signal transduction mechanisms]
Probab=57.47 E-value=8.9 Score=41.06 Aligned_cols=82 Identities=16% Similarity=0.083 Sum_probs=60.9
Q ss_pred eeeecCCCe-EEEEEEeecCCC-cc----eEEEEEEEEEC--------CCCCCCCCCcCchhHHHHHHHHHHHHHHHHHH
Q 010203 167 SIQITKTGM-YNLYFIHCDLNL-KD----LVVEGKSIWKN--------PTGYLPGRMAPLMNFYGFMSLAFVILGLFWFS 232 (515)
Q Consensus 167 ~y~I~ktG~-Y~v~~~~C~~~~-~~----~~~~g~v~~~N--------~~GyLpa~e~pll~fY~~msi~Y~~l~i~W~~ 232 (515)
+..+++||- |..+.+-|.-.. .. -.+.--++|+- ++|++.+.+.|++.|+-++.++.+-+...|+.
T Consensus 296 ~Iv~dEte~~~q~~~tw~~if~lvd~~cc~ai~fpIvwSi~~L~E~s~tDgkaa~nl~kL~lfrqfyi~vi~yiyftrIv 375 (440)
T KOG2569|consen 296 SIVTDETEPLTQDWVTWNQIFLLVDLKCCCAILFPIVWSIRHLRETSKTDGKAAANLIKLPLFRQFYIVVIGYIYFTRIV 375 (440)
T ss_pred heeecCCCcchhhhhhhhheeeeecceeeeEEeeeeeeehhhhhhccCCcchhhcCcccchHHHHHHhhhhhhhhhhhhh
Confidence 455566554 445554443110 11 13444667776 89999999999999999999999999999999
Q ss_pred HHhhhccchhHHHHHH
Q 010203 233 QYARFWREVLHLQNCI 248 (515)
Q Consensus 233 ~~~k~r~~ll~Iq~~I 248 (515)
.+.+.+.+++++|+..
T Consensus 376 v~~l~~~~~fky~W~~ 391 (440)
T KOG2569|consen 376 VFALKTIAVFKYQWLS 391 (440)
T ss_pred hhhhhhccceeeeeHH
Confidence 9999999999999754
No 12
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=50.57 E-value=21 Score=35.76 Aligned_cols=19 Identities=21% Similarity=0.011 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010203 389 DIYRKFTNALAVAVIVSVG 407 (515)
Q Consensus 389 ~mYr~f~~~lv~~V~~s~i 407 (515)
++.|.+..+++++++=.++
T Consensus 7 ~~~~~~~~illg~~iGg~~ 25 (248)
T PF11368_consen 7 RILRFLLLILLGGLIGGFI 25 (248)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666666777666554444
No 13
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=49.68 E-value=13 Score=29.50 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=13.5
Q ss_pred HHHHHhhhhcccCCCCC
Q 010203 441 SLLCVICALWAPSQNSM 457 (515)
Q Consensus 441 ~~l~~i~~lWRPt~nn~ 457 (515)
++++++.|.+||.....
T Consensus 21 ~fiavi~~ayr~~~K~~ 37 (60)
T COG4736 21 FFIAVIYFAYRPGKKGE 37 (60)
T ss_pred HHHHHHHHHhcccchhh
Confidence 46778899999998754
No 14
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=46.03 E-value=1.7e+02 Score=29.39 Aligned_cols=39 Identities=10% Similarity=0.183 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010203 370 TSLSSTLNKLQARRMMTKLDIYRKFTNALAVAVIVSVGW 408 (515)
Q Consensus 370 ~sL~~Ti~~L~~~rq~~KL~mYr~f~~~lv~~V~~s~i~ 408 (515)
.++.+-+++..++-|.++-.||+-+..++++.++|.++.
T Consensus 130 ~~ml~evK~~~E~y~k~~k~~~~gi~aml~Vf~LF~lvm 168 (230)
T PF03904_consen 130 KSMLQEVKQSHEKYQKRQKSMYKGIGAMLFVFMLFALVM 168 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344444555556667777889999998888777776554
No 15
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=40.99 E-value=5e+02 Score=29.30 Aligned_cols=26 Identities=15% Similarity=0.041 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhccccccccccCcc
Q 010203 290 KRTVARVIILMVAMGYGVVRPTLGGL 315 (515)
Q Consensus 290 k~tlsf~LlLlVslGYGvVkp~L~~~ 315 (515)
|.....++..+.|-=-|+++...+..
T Consensus 308 rv~~ig~~~~i~s~i~~l~~~~g~~s 333 (518)
T KOG2568|consen 308 RVCQIGVIYFIASEILGLARVIGNIS 333 (518)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhcCcc
Confidence 44444444444444445555555443
No 16
>PF13491 DUF4117: Domain of unknown function (DUF4117)
Probab=38.76 E-value=2.8e+02 Score=25.53 Aligned_cols=67 Identities=16% Similarity=0.179 Sum_probs=42.9
Q ss_pred EEEECCCCCCCCCC-cCchhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Q 010203 196 SIWKNPTGYLPGRM-APLMNFYGFMSLAFVILGLFWFSQYARFWREVLHLQNCITLVITLGMFEMALW 262 (515)
Q Consensus 196 v~~~N~~GyLpa~e-~pll~fY~~msi~Y~~l~i~W~~~~~k~r~~ll~Iq~~I~avi~l~~le~~~~ 262 (515)
.+.+|.-|-+-|-- .-.....|..+.+..++.+.|...++++|+.-.+..+++..++.+..+..++.
T Consensus 41 ~~~~N~~G~~Ga~~a~~l~~~fG~~a~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 108 (171)
T PF13491_consen 41 AEVHNLMGILGAYLADFLFQLFGLGAYLLPLLLIVWGIRLFRRRSLRRRIRRWLGLLLLLLSLSGLLS 108 (171)
T ss_pred CCCcCCCChHhHHHHHhHHhccchHHHHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHHHHHHH
Confidence 34566666433331 11335777888888888899999999988755566666665555555544443
No 17
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=34.79 E-value=1.3e+02 Score=31.56 Aligned_cols=55 Identities=16% Similarity=0.304 Sum_probs=26.3
Q ss_pred HHhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010203 352 FLVLPVAILDAFF---ILWIFTSLSSTLNKLQARRMMTKLDIYRKFTNALAVAVIVSVGW 408 (515)
Q Consensus 352 f~~lpla~~~~vf---~~WI~~sL~~Ti~~L~~~rq~~KL~mYr~f~~~lv~~V~~s~i~ 408 (515)
+-.+|.++-|.+. ++|++..+.+.++++..++...+ +-+-+..+.++++++.+.|
T Consensus 18 ~g~~PFSvgdi~~~~~il~ll~~~~~~~~~~~k~~~~~~--l~~~~~~~~~~y~~F~~~W 75 (318)
T PF12725_consen 18 FGWFPFSVGDILYYLLILFLLYYLIRLIRKIFKKKKRFK--LLNILFFLSVLYFLFYLLW 75 (318)
T ss_pred ccCcChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHHHHHh
Confidence 3455666555444 44555555555554433322222 3333344455555666655
No 18
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=33.29 E-value=3.6e+02 Score=27.69 Aligned_cols=77 Identities=19% Similarity=0.291 Sum_probs=49.0
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccchhhhHh
Q 010203 350 RLFLVLPVAILDAFFILWIFTSLSSTLNKLQARRMMTKLDIYRKFTNALAVAVIVSVGWICYELYFKSNDIYNEKWQNAW 429 (515)
Q Consensus 350 ~Lf~~lpla~~~~vf~~WI~~sL~~Ti~~L~~~rq~~KL~mYr~f~~~lv~~V~~s~i~i~~~~~~~~~~~~~~~Wk~~W 429 (515)
.+.+++|- ..|..--...+++..++|+..|.. +++.+|.++.+..+++++|-+.++...+.+.-..-+|..|
T Consensus 13 d~~l~vPn----~lFllfL~~~~~~s~~KL~~~~Sp----I~~tyY~llw~v~llnl~rc~vsm~~~~~~~~~~~d~~lW 84 (261)
T PF10160_consen 13 DVVLLVPN----LLFLLFLAWRLRKSRRKLRHTRSP----IFITYYALLWVVALLNLARCFVSMWVCSPGKGGIADKVLW 84 (261)
T ss_pred HHHHHHHH----HHHHHHHHHhchHHHHHHhcCCCc----cHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHH
Confidence 34455553 233333344567777777755543 7899999999999999998877766555443234567777
Q ss_pred HHHHH
Q 010203 430 IIPAF 434 (515)
Q Consensus 430 ~i~~~ 434 (515)
.+.-+
T Consensus 85 ~ilrf 89 (261)
T PF10160_consen 85 NILRF 89 (261)
T ss_pred HHHHH
Confidence 66543
No 19
>PTZ00121 MAEBL; Provisional
Probab=32.71 E-value=28 Score=43.14 Aligned_cols=83 Identities=17% Similarity=0.349 Sum_probs=47.5
Q ss_pred EeeccccccccccCCCceeeecCcccc---ccCCCCC-CCEEeCCCCCC---CCCCeEEeeeeecccccccCCCceeeec
Q 010203 99 FEVEDRETIGGSAYGGQRAVCCTADLS---KLGVCTQ-GEVIHRPSTKD---PSWPQVFGIKFEVDEVEATLPSNSIQIT 171 (515)
Q Consensus 99 fe~~D~~~iG~~~~~~~~~~cC~~~~~---~~g~C~~-g~~Ii~~~~~~---~~~~~~~~~~f~~~~~~~~~~~~~y~I~ 171 (515)
|+|.|.+++|.........-+|..--. ..|.|.. |..|+-.-..+ -.|..-+.+-|.+..+ ..+...|+.
T Consensus 56 ydi~~~kn~~~~~~~~~~~~~Cpn~~~~~~y~GsCPnYGKtf~m~l~~~eyne~flNEI~~g~Lnkk~---~~~iEIp~~ 132 (2084)
T PTZ00121 56 YDIDDGDNLDFEGNEEEKSGICPDHGAEEMYKGGCPDYGKTFLMDFEDDEYNEEFLDEISFGFLNKKL---KLPIEIPLE 132 (2084)
T ss_pred eeeecCcccccccccchhcccCCCCCccceecCCCCCccceEEEecccchhhHHHHHHHhhccccccc---Ccceeeecc
Confidence 455566677754444444455654332 3799998 88876543222 2343333332222222 235678888
Q ss_pred CCC--eEEEEEEeec
Q 010203 172 KTG--MYNLYFIHCD 184 (515)
Q Consensus 172 ktG--~Y~v~~~~C~ 184 (515)
++| ||.=+|.+|.
T Consensus 133 ~sGlAMyqGlf~~CP 147 (2084)
T PTZ00121 133 KSGLAMYQGLFKRCP 147 (2084)
T ss_pred chhHHHHhchhhcCC
Confidence 888 6888899995
No 20
>CHL00043 cemA envelope membrane protein
Probab=30.42 E-value=54 Score=33.50 Aligned_cols=40 Identities=30% Similarity=0.511 Sum_probs=26.6
Q ss_pred HHHHhhccccCCcccchhHHhhHHHHHHHHHHHHHHHHHHH
Q 010203 334 ELVENVGAVSDLSGKARLFLVLPVAILDAFFILWIFTSLSS 374 (515)
Q Consensus 334 ~i~~~~g~~~d~s~~~~Lf~~lpla~~~~vf~~WI~~sL~~ 374 (515)
.+.++.|-.++-.-...+...+|+ ++|++|=+|||+.|++
T Consensus 208 ~i~~hfGl~~n~~~I~lfVatfPV-iLDtiFKYWIFRyLNR 247 (261)
T CHL00043 208 SIYKHFGFAHNDQIISLLVSTFPV-ILDTIFKYWIFRYLNR 247 (261)
T ss_pred HHHHhcCCCcccchHHHHHHhhhH-HHHHHHHHHHHhhccC
Confidence 355677754432222234566687 5799999999999886
No 21
>PF09971 DUF2206: Predicted membrane protein (DUF2206); InterPro: IPR018701 This family of predicted membrane proteins from archaea has no known function.
Probab=29.80 E-value=7.2e+02 Score=26.64 Aligned_cols=49 Identities=24% Similarity=0.239 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHH
Q 010203 361 DAFFILWIFTSLSSTLNKLQARRMMT-KLDIYRKFTNALAVAVIVSVGWI 409 (515)
Q Consensus 361 ~~vf~~WI~~sL~~Ti~~L~~~rq~~-KL~mYr~f~~~lv~~V~~s~i~i 409 (515)
.+-|+++=...+.+.+.+++.++-.. .-..+|-+...+++..+++.+++
T Consensus 187 LAPf~iiG~~~~~~~i~k~~~~~~~~~~~~~~ki~~ifl~v~lLfnsG~i 236 (367)
T PF09971_consen 187 LAPFFIIGGITLFKLINKLFRRIWKPINKNSFKILSIFLAVFLLFNSGFI 236 (367)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHHHhhhHH
Confidence 44444444445555666666544411 11123444555666666665554
No 22
>PF14089 KbaA: KinB-signalling pathway activation in sporulation
Probab=29.33 E-value=5.4e+02 Score=24.99 Aligned_cols=60 Identities=20% Similarity=0.325 Sum_probs=29.4
Q ss_pred HHHHHHhccccccccccCccceeeeehHHHHHHHHHHHHHHHhhcc--ccCCcccchhHHhhHHHHHHH
Q 010203 296 VIILMVAMGYGVVRPTLGGLTSKVIMLGGTFFLASEVLELVENVGA--VSDLSGKARLFLVLPVAILDA 362 (515)
Q Consensus 296 ~LlLlVslGYGvVkp~L~~~~~kv~~l~v~yfi~s~~~~i~~~~g~--~~d~s~~~~Lf~~lpla~~~~ 362 (515)
.++|++|+--..+|.+.+.+ +.. +-.++|...+. +.|-+.. .+|.+ +..+.++|+..|++
T Consensus 109 ~~ll~~~lvvA~~K~K~Tnk--~Af-IPaLFfMvVvT--~lEw~PaL~~n~~~--~l~~ml~pLl~CNA 170 (180)
T PF14089_consen 109 LFLLIVALVVAYIKAKQTNK--SAF-IPALFFMVVVT--TLEWVPALRVNDEN--WLYLMLFPLLACNA 170 (180)
T ss_pred HHHHHHHHHHHHHHHHHhcc--cch-hHHHHHHHHHH--HHHHHHHHhcCCcc--cHHHHHHHHHHHHH
Confidence 34555555555566665532 333 33333332221 2233221 23322 56677889888876
No 23
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.24 E-value=4.8e+02 Score=27.06 Aligned_cols=47 Identities=21% Similarity=0.320 Sum_probs=26.5
Q ss_pred HHhhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHH
Q 010203 352 FLVLPVAILDA-----FFILWIFTSLSSTLNKLQARRM----MTKLDIYRKFTNAL 398 (515)
Q Consensus 352 f~~lpla~~~~-----vf~~WI~~sL~~Ti~~L~~~rq----~~KL~mYr~f~~~l 398 (515)
.+++|+.++.- ....|.+.+..-....+|+-|+ ..---.|+-|..+-
T Consensus 89 m~~iPlyf~~~~~w~rfl~~WlmF~~~tafi~~ka~rkp~~g~tpRlVYkwFl~ly 144 (328)
T KOG1734|consen 89 MLFIPLYFFLYMQWYRFLFCWLMFCGFTAFITLKALRKPISGDTPRLVYKWFLFLY 144 (328)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHH
Confidence 34567766543 2366777776666566666543 23344666665543
No 24
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=27.66 E-value=7.2e+02 Score=30.72 Aligned_cols=32 Identities=9% Similarity=0.225 Sum_probs=21.9
Q ss_pred hHhHHHHHHHHHHHHHHHHhhhhcccCCCCCc
Q 010203 427 NAWIIPAFWQILSFSLLCVICALWAPSQNSMR 458 (515)
Q Consensus 427 ~~W~i~~~w~~L~f~~l~~i~~lWRPt~nn~~ 458 (515)
.+|+-..+|-....++++++..++||......
T Consensus 201 ~~~~~~~~~~~~~~~l~~a~~~l~r~~~~~~~ 232 (1094)
T PRK02983 201 PVWVNALLGLFGAAALIAALIVLFRSQRADNA 232 (1094)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcC
Confidence 46666667766656666677788999776544
No 25
>PF03040 CemA: CemA family; InterPro: IPR004282 Members of this family are probable integral membrane proteins. Their molecular function is unknown. CemA proteins are found in the inner envelope membrane of chloroplasts but not in the thylakoid membrane []. A cyanobacterial member of this family (proton extrusion protein PcxA) is involved in light-induced Na(+)-dependent proton extrusion and has been implicated in CO2 transport, but is probably not a CO2 transporter itself [].; GO: 0016021 integral to membrane
Probab=27.27 E-value=53 Score=32.98 Aligned_cols=39 Identities=31% Similarity=0.559 Sum_probs=26.5
Q ss_pred HHHhhccccCCcccchhHHhhHHHHHHHHHHHHHHHHHHH
Q 010203 335 LVENVGAVSDLSGKARLFLVLPVAILDAFFILWIFTSLSS 374 (515)
Q Consensus 335 i~~~~g~~~d~s~~~~Lf~~lpla~~~~vf~~WI~~sL~~ 374 (515)
+.++.|-.++-.....+...+|| ++|++|=+|||+.|++
T Consensus 178 ~~~hfG~~~n~~~i~~fvatfPV-iLDt~fKyWIFryLnr 216 (230)
T PF03040_consen 178 ILEHFGLPENEQFISLFVATFPV-ILDTIFKYWIFRYLNR 216 (230)
T ss_pred HHHhcCCCcccchhhhhhhhhhH-HHHHHHHHhhhcccCC
Confidence 45677754432222234566787 5799999999998876
No 26
>PRK02507 proton extrusion protein PcxA; Provisional
Probab=27.20 E-value=2e+02 Score=31.43 Aligned_cols=41 Identities=27% Similarity=0.454 Sum_probs=27.2
Q ss_pred HHHHHhhccccCCcccchhHHhhHHHHHHHHHHHHHHHHHHH
Q 010203 333 LELVENVGAVSDLSGKARLFLVLPVAILDAFFILWIFTSLSS 374 (515)
Q Consensus 333 ~~i~~~~g~~~d~s~~~~Lf~~lpla~~~~vf~~WI~~sL~~ 374 (515)
..+.+++|-.++-.-...+...+|| ++|++|=+|||+.|++
T Consensus 368 ~~i~~HfGl~~n~~~I~lFVaTfPV-iLDTiFKYWIFRyLNR 408 (422)
T PRK02507 368 EGIARHFGLPENRNFIFLFIATFPV-ILDTIFKYWIFRYLNR 408 (422)
T ss_pred HHHHHhcCCCcccchHHHHHhhhhH-HHHHHHHHHHHhhccC
Confidence 3356777755432222234566677 5799999999998876
No 27
>COG3771 Predicted membrane protein [Function unknown]
Probab=23.51 E-value=4.8e+02 Score=22.49 Aligned_cols=30 Identities=17% Similarity=0.316 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 010203 359 ILDAFFILWIFTSLSSTLNKLQARRMMTKL 388 (515)
Q Consensus 359 ~~~~vf~~WI~~sL~~Ti~~L~~~rq~~KL 388 (515)
+.....+.|++..+..---+|+.+|-..|+
T Consensus 49 F~~G~~lgwli~g~fy~k~~l~~~~l~rqi 78 (97)
T COG3771 49 FAAGFALGWLICGLFYLKVRLSLMRLERQI 78 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445788888877654455544444443
No 28
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=23.32 E-value=5.4e+02 Score=23.00 Aligned_cols=54 Identities=13% Similarity=0.193 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHH
Q 010203 241 VLHLQNCITLVITLGMFEMALWYFEYAEFNETGVRPMGITAWAVTFGTVKRTVA 294 (515)
Q Consensus 241 ll~Iq~~I~avi~l~~le~~~~~~~Y~~~N~~G~~~~~~~v~~~i~~a~k~tls 294 (515)
.++-.--+..++++..++..++..++.+.|.+|.-.-....+..+|-++--.+.
T Consensus 50 ~l~~~~~~~~I~~lAvvQi~VqL~yFLHm~~k~~~~~~~~if~gi~va~~tv~a 103 (110)
T TIGR02908 50 EIDKWFVIPFILLLAAVQVAFQLYYFMHMKDKGHEVPAQFIYGGVFVTMLVVLA 103 (110)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHheeeCCCccchHHHHHHHHHHHHHHHHHH
Confidence 445555667777888899999988888888776633223334444444333333
No 29
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=22.81 E-value=9.9e+02 Score=25.84 Aligned_cols=80 Identities=24% Similarity=0.307 Sum_probs=45.5
Q ss_pred ceeeecCCCeEEEEEEeecCCCcceEEEEEEEEECCCCCCCCC---CcCchhHHHH-HHHHHHHHHHH----HHHHHhhh
Q 010203 166 NSIQITKTGMYNLYFIHCDLNLKDLVVEGKSIWKNPTGYLPGR---MAPLMNFYGF-MSLAFVILGLF----WFSQYARF 237 (515)
Q Consensus 166 ~~y~I~ktG~Y~v~~~~C~~~~~~~~~~g~v~~~N~~GyLpa~---e~pll~fY~~-msi~Y~~l~i~----W~~~~~k~ 237 (515)
..-.++..|+-|.+..--|=+.-|.+ .+|.-|++.-. |-|-+-+|.. +.+++++..++ |...+.++
T Consensus 33 iaA~fp~~GfPC~y~~vVDY~~~N~t------~~n~~~~ltP~LFLe~~~~~~yv~~t~~v~l~~~iYyi~~av~i~~~~ 106 (374)
T PF01528_consen 33 IAASFPGLGFPCFYAAVVDYSALNLT------ARNVMGHLTPTLFLEAPEMVFYVYFTFIVFLAVAIYYIVGAVIIYRRK 106 (374)
T ss_pred HHHhCCCCCCCeeccccccchhcCCc------hhhccCCCCCceeccCCeeeeehHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567788999988654432211222 67777766654 5666666664 44444444444 44444444
Q ss_pred c---cchhHHHHHHHHH
Q 010203 238 W---REVLHLQNCITLV 251 (515)
Q Consensus 238 r---~~ll~Iq~~I~av 251 (515)
+ ...-..+.||+.+
T Consensus 107 ~~~~~~~~~~~~~i~~v 123 (374)
T PF01528_consen 107 KGHAYGLNQLSRWISLV 123 (374)
T ss_pred cccchhhhHHHHHHHHh
Confidence 4 2467788877554
No 30
>PRK10263 DNA translocase FtsK; Provisional
Probab=21.46 E-value=7.3e+02 Score=31.35 Aligned_cols=41 Identities=17% Similarity=0.075 Sum_probs=21.5
Q ss_pred EECCCCCCCCCCcC-chhHHHHHHHHHHHHHHHHHHHHhhhc
Q 010203 198 WKNPTGYLPGRMAP-LMNFYGFMSLAFVILGLFWFSQYARFW 238 (515)
Q Consensus 198 ~~N~~GyLpa~e~p-ll~fY~~msi~Y~~l~i~W~~~~~k~r 238 (515)
.+|.-|-+.|--.- ++-++|+++.+..++++++.+..++++
T Consensus 60 V~Nl~GiVGA~LAD~L~~LFGl~AYLLP~LL~~~a~~l~R~r 101 (1355)
T PRK10263 60 IHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQ 101 (1355)
T ss_pred cccccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcc
Confidence 46776755554322 344566665555554444555555544
No 31
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=20.70 E-value=1.4e+02 Score=25.15 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=17.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010203 353 LVLPVAILDAFFILWIFTSLSSTLNK 378 (515)
Q Consensus 353 ~~lpla~~~~vf~~WI~~sL~~Ti~~ 378 (515)
.++|++++.+++|++++++-.+--++
T Consensus 5 ~l~~~vv~~~i~yf~~~rpqkK~~k~ 30 (84)
T TIGR00739 5 TLLPLVLIFLIFYFLIIRPQRKRRKA 30 (84)
T ss_pred HHHHHHHHHHHHHHheechHHHHHHH
Confidence 34567777888888887766554433
Done!