Query 010203
Match_columns 515
No_of_seqs 193 out of 391
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 22:08:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010203.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010203hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lif_A Core protein P21; signa 40.9 8.2 0.00028 24.9 0.0 24 4-31 3-26 (27)
2 3odu_A C-X-C chemokine recepto 31.6 4E+02 0.014 26.5 12.6 21 353-374 218-238 (502)
3 4eiy_A Adenosine receptor A2A/ 28.1 4.3E+02 0.015 25.7 18.4 27 353-380 211-237 (447)
4 3eml_A Human adenosine A2A rec 25.4 4.9E+02 0.017 25.6 21.2 22 353-375 201-222 (488)
5 3rko_A NADH-quinone oxidoreduc 21.0 4.4E+02 0.015 23.3 9.7 61 242-314 64-125 (147)
6 3rze_A Histamine H1 receptor, 17.9 6.7E+02 0.023 24.3 18.6 21 353-374 180-200 (452)
7 2qzq_A Axin interactor, dorsal 17.2 75 0.0026 28.6 2.8 36 67-105 59-94 (152)
8 2rdd_B UPF0092 membrane protei 17.1 1.4E+02 0.0046 20.2 3.5 24 354-377 6-29 (37)
9 1nkz_B Light-harvesting protei 13.3 1.6E+02 0.0053 20.8 3.0 8 445-452 31-38 (41)
10 1wrg_A LH-1, light-harvesting 11.5 1.7E+02 0.0058 21.8 2.9 11 445-455 39-49 (55)
No 1
>2lif_A Core protein P21; signal peptide, E1 envelope protein, transmemb membrane protein, viral protein; NMR {Hepatitis c virus jfh-1}
Probab=40.91 E-value=8.2 Score=24.87 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=14.2
Q ss_pred ccchhHHHHHHHHHHHHhhcccceeeec
Q 010203 4 KMNQSVVLLLLFLGLMLVCVSEASVHEY 31 (515)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~s~~~y 31 (515)
.+|-|.+++++++| +.++ ||..+|
T Consensus 3 gcsfsiFlLaLlsc-Lt~P---asa~~v 26 (27)
T 2lif_A 3 GFPFSIFLLALLSC-ITVP---VSAAQV 26 (27)
Confidence 35677777777664 4444 444444
No 2
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=31.58 E-value=4e+02 Score=26.51 Aligned_cols=21 Identities=29% Similarity=0.282 Sum_probs=12.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHH
Q 010203 353 LVLPVAILDAFFILWIFTSLSS 374 (515)
Q Consensus 353 ~~lpla~~~~vf~~WI~~sL~~ 374 (515)
.++|+++ ..++|..|+..+.+
T Consensus 218 ~~~p~~i-i~~~y~~I~~~l~~ 238 (502)
T 3odu_A 218 LILPGIV-ILSCYCIIISKLSH 238 (502)
T ss_dssp THHHHHH-HHHHHHHHHHHGGG
T ss_pred HHHHHHH-HHHHHHHHHHHHhh
Confidence 3456543 45567777777655
No 3
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=28.12 E-value=4.3e+02 Score=25.74 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=17.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010203 353 LVLPVAILDAFFILWIFTSLSSTLNKLQ 380 (515)
Q Consensus 353 ~~lpla~~~~vf~~WI~~sL~~Ti~~L~ 380 (515)
.++|+++ ..++|..|+..+.+..++.+
T Consensus 211 ~~lP~~i-i~~~y~~I~~~l~~~~~~~~ 237 (447)
T 4eiy_A 211 VLVPLLL-MLGVYLRIFLAARRQLADLE 237 (447)
T ss_dssp CHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHhhhhh
Confidence 4567654 45667888888877665543
No 4
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=25.43 E-value=4.9e+02 Score=25.58 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=13.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Q 010203 353 LVLPVAILDAFFILWIFTSLSST 375 (515)
Q Consensus 353 ~~lpla~~~~vf~~WI~~sL~~T 375 (515)
.++|++ +..++|..|+..+.+.
T Consensus 201 ~~~P~~-ii~~~y~~I~~~l~~~ 222 (488)
T 3eml_A 201 VLVPLL-LMLGVYLRIFLAARRQ 222 (488)
T ss_dssp THHHHH-HHHHHHHHHHHHHTCC
T ss_pred HHHHHH-HHHHHHHHHHHHHHHH
Confidence 455654 3455677777776543
No 5
>3rko_A NADH-quinone oxidoreductase subunit A; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=20.96 E-value=4.4e+02 Score=23.32 Aligned_cols=61 Identities=13% Similarity=0.099 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCc
Q 010203 242 LHLQNCITLVITLGM-FEMALWYFEYAEFNETGVRPMGITAWAVTFGTVKRTVARVIILMVAMGYGVVRPTLGG 314 (515)
Q Consensus 242 l~Iq~~I~avi~l~~-le~~~~~~~Y~~~N~~G~~~~~~~v~~~i~~a~k~tlsf~LlLlVslGYGvVkp~L~~ 314 (515)
+.+|+|+.+++++.. +|.++-+---...+.. ++ ...-..+.|+++|++|+=|---+-.|.-
T Consensus 64 FsirFfLiAilFlIFDvEi~~L~Pwa~~~~~~-----~~-------~~~~~~~~Fl~iL~~Gl~yEW~~GaL~W 125 (147)
T 3rko_A 64 LSAKFYLVAMFFVIFDVEALYLFAWSTSIRES-----GW-------VGFVEAAIFIFVLLAGLVYLVRIGALDW 125 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTT-----HH-------HHHHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hH-------HHHHHHHHHHHHHHHHHHHHHHcCCeEe
Confidence 889999988877665 7888753211111111 11 1122356788888888877666666653
No 6
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=17.91 E-value=6.7e+02 Score=24.28 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=12.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHH
Q 010203 353 LVLPVAILDAFFILWIFTSLSS 374 (515)
Q Consensus 353 ~~lpla~~~~vf~~WI~~sL~~ 374 (515)
+++|++ +..++|+.|+..+.+
T Consensus 180 ~~~p~~-ii~~~y~~I~~~l~~ 200 (452)
T 3rze_A 180 FYLPTL-LMLWFYAKIYKAVRQ 200 (452)
T ss_dssp THHHHH-HHHHHHHHHHHHSCC
T ss_pred HHHHHH-HHHHHHHHHHHHHHH
Confidence 455653 345557777766643
No 7
>2qzq_A Axin interactor, dorsalization associated protein; beta sheet sandwich, coiled coil, signaling protein, lipid binding protein; 1.90A {Danio rerio} PDB: 2qz5_A
Probab=17.22 E-value=75 Score=28.63 Aligned_cols=36 Identities=22% Similarity=0.458 Sum_probs=23.3
Q ss_pred CCCCcceEEeeeEEeeccCCCCCCCceEEEEEEeecccc
Q 010203 67 NNGDSYIRFEKITFRRSIDNSNFSSGLIQALVFEVEDRE 105 (515)
Q Consensus 67 ~~~~s~I~f~~v~f~~~~~~~~~~~g~v~~vIfe~~D~~ 105 (515)
...++|+.|+ .++.-.....+-.+| ++|+||++++.
T Consensus 59 ~~~~~yv~f~-~~v~lqtple~lp~G--~aivfElkH~k 94 (152)
T 2qzq_A 59 RKEDTYIHFS-VDVEIQRHLEKLPKG--AAIFFEFKHYK 94 (152)
T ss_dssp EECSSEEEEE-EEEECSSCGGGSCTT--CEEEEEEEEEE
T ss_pred eecCCeEEEe-eEEEeeCcHHHCCCC--cEEEEEEEEec
Confidence 4577899997 455433322233457 56999999984
No 8
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=17.07 E-value=1.4e+02 Score=20.19 Aligned_cols=24 Identities=13% Similarity=0.322 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 010203 354 VLPVAILDAFFILWIFTSLSSTLN 377 (515)
Q Consensus 354 ~lpla~~~~vf~~WI~~sL~~Ti~ 377 (515)
++|+++..++||+.++++-.+-.+
T Consensus 6 ~l~~v~~~~ifYFl~iRPQ~Kr~K 29 (37)
T 2rdd_B 6 ILMLVVFGLIFYFMILRPQQKRTK 29 (37)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHH
Confidence 456666777888877776554433
No 9
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=13.34 E-value=1.6e+02 Score=20.76 Aligned_cols=8 Identities=13% Similarity=0.152 Sum_probs=6.2
Q ss_pred Hhhhhccc
Q 010203 445 VICALWAP 452 (515)
Q Consensus 445 ~i~~lWRP 452 (515)
+.+|.|||
T Consensus 31 ~l~w~wrP 38 (41)
T 1nkz_B 31 FLAFSATP 38 (41)
T ss_dssp HHHHHHSS
T ss_pred HHHHHhCC
Confidence 45788998
No 10
>1wrg_A LH-1, light-harvesting protein B-880, beta chain; membrane protein, pigment binding, photosynthesis; NMR {Rhodospirillum rubrum}
Probab=11.48 E-value=1.7e+02 Score=21.85 Aligned_cols=11 Identities=18% Similarity=0.585 Sum_probs=7.8
Q ss_pred HhhhhcccCCC
Q 010203 445 VICALWAPSQN 455 (515)
Q Consensus 445 ~i~~lWRPt~n 455 (515)
+.+|.|||=-.
T Consensus 39 ~L~~~wrPWl~ 49 (55)
T 1wrg_A 39 LLVWIWRPWVP 49 (55)
T ss_dssp HHHSSCSSSSC
T ss_pred HHHHHhcccCC
Confidence 46788999543
Done!