Query 010203
Match_columns 515
No_of_seqs 193 out of 391
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 22:08:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010203.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010203hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1m56c_ f.25.1.1 (C:) Bacteria 25.4 2.1E+02 0.015 25.1 12.3 59 212-270 131-189 (265)
2 d1v54c_ f.25.1.1 (C:) Mitochon 24.5 2.2E+02 0.016 25.0 11.7 60 212-272 126-185 (259)
3 d1alya_ b.22.1.1 (A:) Extracel 23.1 55 0.004 26.6 5.5 37 167-203 45-85 (146)
4 d1lghb_ f.3.1.1 (B:) Light-har 16.1 56 0.0041 21.6 3.0 8 445-452 34-41 (43)
5 d1kxga_ b.22.1.1 (A:) Soluble 15.8 1E+02 0.0074 24.9 5.6 39 164-204 40-78 (144)
6 d1jo5a_ f.3.1.1 (A:) Light-har 10.2 70 0.0051 21.6 2.1 8 445-452 39-46 (48)
7 d1xu1a_ b.22.1.1 (A:) A prolif 9.1 91 0.0066 24.9 3.0 20 165-184 39-58 (137)
8 d1dg6a_ b.22.1.1 (A:) Apoptosi 9.0 2E+02 0.014 23.3 5.3 19 165-183 52-70 (162)
9 d1rj8a_ b.22.1.1 (A:) Ectodysp 8.9 1E+02 0.0073 24.9 3.2 21 164-184 42-62 (140)
10 d1i3za_ d.93.1.1 (A:) Ews/fli1 8.9 1.5E+02 0.011 22.0 4.2 42 130-179 23-66 (103)
No 1
>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=25.42 E-value=2.1e+02 Score=25.11 Aligned_cols=59 Identities=14% Similarity=0.122 Sum_probs=36.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010203 212 LMNFYGFMSLAFVILGLFWFSQYARFWREVLHLQNCITLVITLGMFEMALWYFEYAEFN 270 (515)
Q Consensus 212 ll~fY~~msi~Y~~l~i~W~~~~~k~r~~ll~Iq~~I~avi~l~~le~~~~~~~Y~~~N 270 (515)
.+|+--...++-....+.|.....++++.-.....++...++++.+=..+.+.+|....
T Consensus 131 ~l~l~nT~iLl~Ss~~~~~a~~~~~~~~~~~~~~~~L~~t~~lg~~F~~~q~~Ey~~~~ 189 (265)
T d1m56c_ 131 HLPLINTLILLCSGCAATWAHHALVHENNRRDVAWGLALAIALGALFTVFQAYEYSHAA 189 (265)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred hhHHHHHHHHHccHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45666666666666777788777655444444555565666666665566777776543
No 2
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=24.46 E-value=2.2e+02 Score=25.00 Aligned_cols=60 Identities=20% Similarity=0.134 Sum_probs=40.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 010203 212 LMNFYGFMSLAFVILGLFWFSQYARFWREVLHLQNCITLVITLGMFEMALWYFEYAEFNET 272 (515)
Q Consensus 212 ll~fY~~msi~Y~~l~i~W~~~~~k~r~~ll~Iq~~I~avi~l~~le~~~~~~~Y~~~N~~ 272 (515)
.+|+...+.++-..+.+.|.....|+++ --+.-.++.+.++++.+-+.+.+.+|...+-+
T Consensus 126 ~lpllnT~vLl~Ss~t~~~A~~~~~~~~-~~~~~~~l~~t~~lg~~Fl~~q~~Ey~~~~~~ 185 (259)
T d1v54c_ 126 EVPLLNTSVLLASGVSITWAHHSLMEGD-RKHMLQALFITITLGVYFTLLQASEYYEAPFT 185 (259)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTTB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCC-chhHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 3566666666666667778777776543 44555567777888888888888888765443
No 3
>d1alya_ b.22.1.1 (A:) Extracellular domain of CD40 ligand {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.13 E-value=55 Score=26.58 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=25.2
Q ss_pred eeeecCCCeEEEEEEeec----CCCcceEEEEEEEEECCCC
Q 010203 167 SIQITKTGMYNLYFIHCD----LNLKDLVVEGKSIWKNPTG 203 (515)
Q Consensus 167 ~y~I~ktG~Y~v~~~~C~----~~~~~~~~~g~v~~~N~~G 203 (515)
...|+++|+|+||..-+- +......+...+..+++.+
T Consensus 45 ~L~V~~~G~Y~VYsQv~f~~~~~~~~~~~~~~~v~~~~~~~ 85 (146)
T d1alya_ 45 QLTVKRQGLYYIYAQVTFCSNREASSQAPFIASLCLKSPGR 85 (146)
T ss_dssp EEEESSCEEEEEEEEEEEEECTTTSCSSEEEEEEEECCTTS
T ss_pred EEEeCCCeEEEEEEEEEEeccCCCCCceeEEEEEEEEcCCC
Confidence 588999999999975542 2222445777777777654
No 4
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=16.06 E-value=56 Score=21.61 Aligned_cols=8 Identities=38% Similarity=1.074 Sum_probs=6.2
Q ss_pred Hhhhhccc
Q 010203 445 VICALWAP 452 (515)
Q Consensus 445 ~i~~lWRP 452 (515)
+..|+|||
T Consensus 34 iLvw~wrP 41 (43)
T d1lghb_ 34 VLVWVWKP 41 (43)
T ss_dssp HHHHHHSC
T ss_pred HHHHHhcC
Confidence 45788998
No 5
>d1kxga_ b.22.1.1 (A:) Soluble part of TALL-1, sTALL-1 (BAFF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.82 E-value=1e+02 Score=24.85 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=25.2
Q ss_pred CCceeeecCCCeEEEEEEeecCCCcceEEEEEEEEECCCCC
Q 010203 164 PSNSIQITKTGMYNLYFIHCDLNLKDLVVEGKSIWKNPTGY 204 (515)
Q Consensus 164 ~~~~y~I~ktG~Y~v~~~~C~~~~~~~~~~g~v~~~N~~Gy 204 (515)
.+.+..|+++|+|+||..-+-.. +. .-.++..+++...+
T Consensus 40 ~~g~L~V~~~GlYfVYsQV~F~~-~~-~~lsh~v~~~~~~~ 78 (144)
T d1kxga_ 40 KENKILVKETGYFFIYGQVLYTD-KT-YAMGHLIQRKKVHV 78 (144)
T ss_dssp ETTEEEECSCEEEEEEEEEEECC-CS-SEEEEEEEEECSCC
T ss_pred ECCEEEEccceEEEEEEEEEEeC-CC-cccceEEEEEeccc
Confidence 35689999999999998766532 12 23445666654433
No 6
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=10.22 E-value=70 Score=21.57 Aligned_cols=8 Identities=25% Similarity=0.949 Sum_probs=6.2
Q ss_pred Hhhhhccc
Q 010203 445 VICALWAP 452 (515)
Q Consensus 445 ~i~~lWRP 452 (515)
+..|+|||
T Consensus 39 ~L~w~wrP 46 (48)
T d1jo5a_ 39 LAVYIWRP 46 (48)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhcC
Confidence 45788998
No 7
>d1xu1a_ b.22.1.1 (A:) A proliferation-inducing ligand, APRIL {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.11 E-value=91 Score=24.86 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=16.8
Q ss_pred CceeeecCCCeEEEEEEeec
Q 010203 165 SNSIQITKTGMYNLYFIHCD 184 (515)
Q Consensus 165 ~~~y~I~ktG~Y~v~~~~C~ 184 (515)
..+..|+++|+|+|+..-|-
T Consensus 39 ~g~L~V~~~G~YyVYsQV~f 58 (137)
T d1xu1a_ 39 GDIVRVWDTGIYLLYSQVLF 58 (137)
T ss_dssp TTEEEECSCEEEEEEEEEEE
T ss_pred CCEEEEccceEEEEEEEEEE
Confidence 56799999999999976664
No 8
>d1dg6a_ b.22.1.1 (A:) Apoptosis-2 ligand, apo2l/TRAIL {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.98 E-value=2e+02 Score=23.27 Aligned_cols=19 Identities=21% Similarity=0.483 Sum_probs=15.2
Q ss_pred CceeeecCCCeEEEEEEee
Q 010203 165 SNSIQITKTGMYNLYFIHC 183 (515)
Q Consensus 165 ~~~y~I~ktG~Y~v~~~~C 183 (515)
+.+..|+++|+|+||..-+
T Consensus 52 ~G~L~V~~~G~YfVYsQV~ 70 (162)
T d1dg6a_ 52 NGELVIHEKGFYYIYSQTY 70 (162)
T ss_dssp TTEEEESSCEEEEEEEEEE
T ss_pred CCEEEeCCCeEEEEEEEEE
Confidence 4578999999999996543
No 9
>d1rj8a_ b.22.1.1 (A:) Ectodysplasin A, Eda-a1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.94 E-value=1e+02 Score=24.89 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=17.7
Q ss_pred CCceeeecCCCeEEEEEEeec
Q 010203 164 PSNSIQITKTGMYNLYFIHCD 184 (515)
Q Consensus 164 ~~~~y~I~ktG~Y~v~~~~C~ 184 (515)
.+.+..|+++|+|+|+..-|.
T Consensus 42 ~~G~L~V~~~G~YyVYsQV~f 62 (140)
T d1rj8a_ 42 RSGELEVLVDGTYFIYSQVYY 62 (140)
T ss_dssp TTCCEEECSCEEEEEEEEEEE
T ss_pred eCCEEEEccCcEEEEEEEEEE
Confidence 466899999999999987774
No 10
>d1i3za_ d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.92 E-value=1.5e+02 Score=21.96 Aligned_cols=42 Identities=24% Similarity=0.340 Sum_probs=24.8
Q ss_pred CCCCCEEeCCCCCCCCCCeEEeeeeecccccccCCCceeee--cCCCeEEEE
Q 010203 130 CTQGEVIHRPSTKDPSWPQVFGIKFEVDEVEATLPSNSIQI--TKTGMYNLY 179 (515)
Q Consensus 130 C~~g~~Ii~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~y~I--~ktG~Y~v~ 179 (515)
+.+|.|++|++.+++.. ..+.+.+.+ ...+|.| ...|.|++.
T Consensus 23 ~~~G~FLVR~S~~~~g~-~~LSv~~~~-------~v~H~~I~~~~~g~~~~~ 66 (103)
T d1i3za_ 23 GVDGNFLIRDSESVPGA-LCLCVSFKK-------LVYSYRIFREKHGYYRIE 66 (103)
T ss_dssp CSTTEEEEEECSSSTTC-EEEEEECSS-------SEEEEEEEECTTSCEEEC
T ss_pred CCCCeEEEEecCCCCCC-EEEEEEeCC-------eEEEEEeEEcCCCcEEEe
Confidence 45799999988776652 333333222 1245666 457787753
Done!