BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010204
         (515 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3LMS|A Chain A, Structure Of Human Activated Thrombin-Activatable
           Fibrinolys Inhibitor, Tafia, In Complex With
           Tick-Derived Funnelin Inh Tci
          Length = 309

 Score = 30.4 bits (67), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 335 ITEFVGTISDISGRARL--FLVLPVAFLDAFLILWIFTSLSKTLEQLQAKRSSIKLDIYR 392
           IT+F G I   +   RL  F V+PV  +D +   W    + +      A    I  D+ R
Sbjct: 84  ITQFYGIIGQYTNLLRLVDFYVMPVVNVDGYDYSWKKNRMWRKNRSFYANNHCIGTDLNR 143

Query: 393 KFSN 396
            F++
Sbjct: 144 NFAS 147


>pdb|3D66|A Chain A, Crystal Structure Of Thrombin-Activatable Fibrinolysis
           Inhibitor (Tafi)
 pdb|3D66|B Chain B, Crystal Structure Of Thrombin-Activatable Fibrinolysis
           Inhibitor (Tafi)
 pdb|3D66|C Chain C, Crystal Structure Of Thrombin-Activatable Fibrinolysis
           Inhibitor (Tafi)
 pdb|3D67|A Chain A, Crystal Structure Of Thrombin-Activatable Fibrinolysis
           Inhibitor (Tafi) In Complex With
           2-Guanidino-Ethyl-Mercaptosuccinic Acid (Gemsa)
 pdb|3D67|B Chain B, Crystal Structure Of Thrombin-Activatable Fibrinolysis
           Inhibitor (Tafi) In Complex With
           2-Guanidino-Ethyl-Mercaptosuccinic Acid (Gemsa)
 pdb|3D67|C Chain C, Crystal Structure Of Thrombin-Activatable Fibrinolysis
           Inhibitor (Tafi) In Complex With
           2-Guanidino-Ethyl-Mercaptosuccinic Acid (Gemsa)
          Length = 424

 Score = 30.0 bits (66), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 335 ITEFVGTISDISGRARL--FLVLPVAFLDAFLILWIFTSLSKTLEQLQAKRSSIKLDIYR 392
           IT+F G I   +   RL  F V+PV  +D +   W    + +      A    I  D+ R
Sbjct: 199 ITQFYGIIGQYTNLLRLVDFYVMPVVNVDGYDYSWKKNRMWRKNRSFYANNHCIGTDLNR 258

Query: 393 KFSN 396
            F++
Sbjct: 259 NFAS 262


>pdb|3D68|A Chain A, Crystal Structure Of A T325i/t329i/h333y/h335q Mutant Of
           Thrombin- Activatable Fibrinolysis Inhibitor (tafi-iiyq)
 pdb|3D68|B Chain B, Crystal Structure Of A T325i/t329i/h333y/h335q Mutant Of
           Thrombin- Activatable Fibrinolysis Inhibitor (tafi-iiyq)
 pdb|3D68|C Chain C, Crystal Structure Of A T325i/t329i/h333y/h335q Mutant Of
           Thrombin- Activatable Fibrinolysis Inhibitor (tafi-iiyq)
          Length = 424

 Score = 29.6 bits (65), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 335 ITEFVGTISDISGRARL--FLVLPVAFLDAFLILWIFTSLSKTLEQLQAKRSSIKLDIYR 392
           IT+F G I   +   RL  F V+PV  +D +   W    + +      A    I  D+ R
Sbjct: 199 ITQFYGIIGQYTNLLRLVDFYVMPVVNVDGYDYSWKKNRMWRKNRSFYANNHCIGTDLNR 258

Query: 393 KFSN 396
            F++
Sbjct: 259 NFAS 262


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,139,747
Number of Sequences: 62578
Number of extensions: 548376
Number of successful extensions: 956
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 956
Number of HSP's gapped (non-prelim): 3
length of query: 515
length of database: 14,973,337
effective HSP length: 103
effective length of query: 412
effective length of database: 8,527,803
effective search space: 3513454836
effective search space used: 3513454836
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)