BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010204
(515 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q28EW0|TM87A_XENTR Transmembrane protein 87A OS=Xenopus tropicalis GN=tmem87a PE=2
SV=1
Length = 541
Score = 192 bits (488), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 107/314 (34%), Positives = 183/314 (58%), Gaps = 12/314 (3%)
Query: 199 KNPNGYLPGRMAPLMNFYVYMSLAYVVLSVIWFIQYVRYWKDILQLQHCITAVITLGLFE 258
K P+G++ PLM FY+ M + Y++L+++WFI YWKD+L++Q I AVI LG+ E
Sbjct: 197 KGPHGFISASDWPLMIFYMVMCIMYILLALLWFIWSACYWKDLLRIQFWIAAVIFLGMLE 256
Query: 259 MILWFSEYANFNNTGIRPVVITTWVVTVGAVRKSLTRLLILCVSMGYGVVRPTLGGLTSK 318
++++EY N +NTG+ + + + +++++L RLL+ VS+GYG+++P LG + +
Sbjct: 257 KAVYYAEYQNTDNTGVSSHGLLIFAELISSIKRTLARLLVTIVSLGYGIIKPRLGAVMHR 316
Query: 319 VLLLGATYFLASELLDITEFVGTISDISGRARLFLV--LPVAFLDAFLILWIFTSLSKTL 376
V+ +G YF+ + + + +G + L L+ +P+A LD+ L WIF SL++T+
Sbjct: 317 VVGMGVLYFVFAAVEGVMRIIG-----AKEYDLVLLAGIPLALLDSGLCWWIFVSLAQTM 371
Query: 377 EQLQAKRSSIKLDIYRKFSNALAVTVIASVIWIAYEV-YFKATDPFNERWQSAWIITAFW 435
+ L+ +++++K +YR F+N L ++AS+I++ + F+ D W W+ A+W
Sbjct: 372 KTLKLRKNTVKYSLYRHFTNTLIFAILASIIFMIWRTKKFQLVD-CQADWMELWVDDAYW 430
Query: 436 DVLAFALLCVICYLWAPSQNSQRYAYSEEVGEEYDEETQSL-TRGKPEG-DLSLVKQEKK 493
L F +L VI +LW PS N+QRYA++ + + DE + L T EG L K E
Sbjct: 431 RFLFFIILLVIMFLWRPSANNQRYAFTPLIDDSDDEVEEFLVTDHLAEGMKLRGTKPECN 490
Query: 494 EKDAGVTANISDED 507
NI DED
Sbjct: 491 GAPKPPATNI-DED 503
>sp|Q8BKU8|TM87B_MOUSE Transmembrane protein 87B OS=Mus musculus GN=Tmem87b PE=2 SV=1
Length = 555
Score = 186 bits (473), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 168/288 (58%), Gaps = 15/288 (5%)
Query: 201 PNGYLPGRMAPLMNFYVYMSLAYVVLSVIWFIQYVRYWKDILQLQHCITAVITLGLFEMI 260
P+GY+ PLM FY+ M + Y++ V+W + YWKDIL++Q I AVI LG+ E
Sbjct: 206 PHGYISASDWPLMIFYMVMCIVYILYGVLWLLWSACYWKDILRIQFWIAAVIFLGMLEKA 265
Query: 261 LWFSEYANFNNTGIRPVVITTWVVTVGAVRKSLTRLLILCVSMGYGVVRPTLGGLTSKVL 320
+++SEY N N+TG+ + + + AV+++L RLL++ VS+GYG+V+P LG + +V+
Sbjct: 266 VFYSEYQNINSTGLSTQGLLIFAELISAVKRTLARLLVIIVSLGYGIVKPRLGTVMHRVI 325
Query: 321 LLGATYFLASELLDITEFVGTISDISGRARLFLVLP---VAFLDAFLILWIFTSLSKTLE 377
LG Y + + + + +G G L +VL +A +D+ + +IF SL++T++
Sbjct: 326 GLGLLYLIFAAIEGVMRVIG------GSKHLAVVLTDIVLAVIDSIFVWFIFISLAQTMK 379
Query: 378 QLQAKRSSIKLDIYRKFSNALAVTVIASVIWIAYEVYFKATDPFNERWQSAWIITAFWDV 437
L+ +++++K +YR F+N L V+AS++++ + W W+ AFW
Sbjct: 380 TLRLRKNTVKFSLYRHFTNTLIFAVLASIVFMVWTTKTFRIAKCQSDWMELWVDDAFWSF 439
Query: 438 LAFALLCVICYLWAPSQNSQRYAY------SEEVGEEYDEETQSLTRG 479
L +L VI +LW PS N+QRYA+ S++ EE+ +++LT G
Sbjct: 440 LFSVILIVIMFLWRPSANNQRYAFMPLIDDSDDEVEEFMVTSENLTEG 487
>sp|Q96K49|TM87B_HUMAN Transmembrane protein 87B OS=Homo sapiens GN=TMEM87B PE=1 SV=1
Length = 555
Score = 184 bits (466), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/321 (31%), Positives = 178/321 (55%), Gaps = 23/321 (7%)
Query: 201 PNGYLPGRMAPLMNFYVYMSLAYVVLSVIWFIQYVRYWKDILQLQHCITAVITLGLFEMI 260
P+GY+ PLM FY+ M + Y++ ++W YWKDIL++Q I AVI LG+ E
Sbjct: 205 PHGYISASDWPLMIFYMVMCIVYILYGILWLTWSACYWKDILRIQFWIAAVIFLGMLEKA 264
Query: 261 LWFSEYANFNNTGIRPVVITTWVVTVGAVRKSLTRLLILCVSMGYGVVRPTLGGLTSKVL 320
+++SEY N +NTG+ + + + A++++L RLL++ VS+GYG+V+P LG + +V+
Sbjct: 265 VFYSEYQNISNTGLSTQGLLIFAELISAIKRTLARLLVIIVSLGYGIVKPRLGTVMHRVI 324
Query: 321 LLGATYFLASELLDITEFVGTISDISGRARLFLVLP---VAFLDAFLILWIFTSLSKTLE 377
LG Y + + + + +G G L +VL +A +D+ + +IF SL++T++
Sbjct: 325 GLGLLYLIFAAVEGVMRVIG------GSNHLAVVLDDIILAVIDSIFVWFIFISLAQTMK 378
Query: 378 QLQAKRSSIKLDIYRKFSNALAVTVIASVIWIAYEVYFKATDPFNERWQSAWIITAFWDV 437
L+ +++++K +YR F N L V+AS++++ + W W+ AFW
Sbjct: 379 TLRLRKNTVKFSLYRHFKNTLIFAVLASIVFMGWTTKTFRIAKCQSDWMERWVDDAFWSF 438
Query: 438 LAFALLCVICYLWAPSQNSQRYAY------SEEVGEEYDEETQSLTRGKPEGDLSLVKQE 491
L +L VI +LW PS N+QRYA+ S++ EE+ +++LT G +K
Sbjct: 439 LFSLILIVIMFLWRPSANNQRYAFMPLIDDSDDEIEEFMVTSENLTEG--------IKLR 490
Query: 492 KKEKDAGVTANISDEDDVEED 512
+ + TA + ++ +ED
Sbjct: 491 ASKSVSNGTAKPATSENFDED 511
>sp|Q8BXN9|TM87A_MOUSE Transmembrane protein 87A OS=Mus musculus GN=Tmem87a PE=1 SV=1
Length = 555
Score = 179 bits (453), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 110/318 (34%), Positives = 175/318 (55%), Gaps = 10/318 (3%)
Query: 199 KNPNGYLPGRMAPLMNFYVYMSLAYVVLSVIWFIQYVRYWKDILQLQHCITAVITLGLFE 258
K P YL PLM F++ M + YV+ V+W YW+D+L++Q I AVI LG+FE
Sbjct: 213 KGPYEYLTLEDYPLMIFFMVMCIVYVLFGVLWLAWSACYWRDLLRIQFWIGAVIFLGMFE 272
Query: 259 MILWFSEYANFNNTGIRPVVITTWVVTVGAVRKSLTRLLILCVSMGYGVVRPTLGGLTSK 318
++++E+ N G + AV++SL R L++ VS+GYG+V+P LG K
Sbjct: 273 KAVFYAEFQNIRYKGESVQNALVLAELLSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHK 332
Query: 319 VLLLGATYFLASELLDITEFVGTISDISGRARLFLVLPVAFLDAFLILWIFTSLSKTLEQ 378
V++ GA Y L S + + G +D++ A +P+AFLD L WIF SL++T++
Sbjct: 333 VVVAGALYLLFSGMEGVLRVTGAQTDLASLA----FIPLAFLDTALCWWIFISLTQTMKL 388
Query: 379 LQAKRSSIKLDIYRKFSNALAVTVIASVIWIAYEVYFKATDPFNERWQSAWIITAFWDVL 438
L+ +R+ +KL +YR F+N L + V AS+++I + W+ W+ A W +L
Sbjct: 389 LKLRRNIVKLSLYRHFTNTLILAVAASIVFIIWTTMKFRIVTCQSDWRELWVDDAIWRLL 448
Query: 439 AFALLCVICYLWAPSQNSQRYAYSE-EVGEEYDEETQSLTRGKPEGDLSLVKQEKKEKDA 497
+L VI LW PS N+QR+A+S +E DE+ + + + EG ++ K+E +
Sbjct: 449 FSMILFVIMILWRPSANNQRFAFSPLSEEDEEDEQKEPMLKESFEG--MKMRSTKQEPNG 506
Query: 498 GVTANISDEDD---VEED 512
N + EDD VEE+
Sbjct: 507 TSKVNKAQEDDLKWVEEN 524
>sp|Q8NBN3|TM87A_HUMAN Transmembrane protein 87A OS=Homo sapiens GN=TMEM87A PE=1 SV=3
Length = 555
Score = 174 bits (441), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 110/318 (34%), Positives = 174/318 (54%), Gaps = 10/318 (3%)
Query: 199 KNPNGYLPGRMAPLMNFYVYMSLAYVVLSVIWFIQYVRYWKDILQLQHCITAVITLGLFE 258
K P YL PLM F++ M + YV+ V+W YW+D+L++Q I AVI LG+ E
Sbjct: 213 KGPYEYLTLEDYPLMIFFMVMCIVYVLFGVLWLAWSACYWRDLLRIQFWIGAVIFLGMLE 272
Query: 259 MILWFSEYANFNNTGIRPVVITTWVVTVGAVRKSLTRLLILCVSMGYGVVRPTLGGLTSK 318
++++E+ N G + AV++SL R L++ VS+GYG+V+P LG K
Sbjct: 273 KAVFYAEFQNIRYKGESVQGALILAELLSAVKRSLARTLVIIVSLGYGIVKPRLGVTLHK 332
Query: 319 VLLLGATYFLASELLDITEFVGTISDISGRARLFLVLPVAFLDAFLILWIFTSLSKTLEQ 378
V++ GA Y L S + + G +D++ A +P+AFLD L WIF SL++T++
Sbjct: 333 VVVAGALYLLFSGMEGVLRVTGAQTDLASLA----FIPLAFLDTALCWWIFISLTQTMKL 388
Query: 379 LQAKRSSIKLDIYRKFSNALAVTVIASVIWIAYEVYFKATDPFNERWQSAWIITAFWDVL 438
L+ +R+ +KL +YR F+N L + V AS+++I + W+ W+ A W +L
Sbjct: 389 LKLRRNIVKLSLYRHFTNTLILAVAASIVFIIWTTMKFRIVTCQSDWRELWVDDAIWRLL 448
Query: 439 AFALLCVICYLWAPSQNSQRYAYSE-EVGEEYDEETQSLTRGKPEGDLSLVKQEKKEKDA 497
+L VI LW PS N+QR+A+S EE DE+ + + + EG ++ K+E +
Sbjct: 449 FSMILFVIMVLWRPSANNQRFAFSPLSEEEEEDEQKEPMLKESFEG--MKMRSTKQEPNG 506
Query: 498 GVTANISDEDD---VEED 512
N + EDD VEE+
Sbjct: 507 NSKVNKAQEDDLKWVEEN 524
>sp|O13989|YEG7_SCHPO Uncharacterized protein C26H5.07c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC26H5.07c PE=3 SV=2
Length = 505
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 96/398 (24%), Positives = 183/398 (45%), Gaps = 35/398 (8%)
Query: 92 GLVQVVIFEAADRNNIGGSAYGGQRSICCTPDLAKLEGCKQGE----VIRMPSATDINWP 147
G ++++IF D N IG G++ C + + CK + +I + D +
Sbjct: 65 GAIRLLIFNWKDVNAIGMEDDDGEKHYICNYEDIEAGVCKDDDYGLYLINQTAPHDSIYS 124
Query: 148 IVLNVQFSGNYLSTKMDNVDVPITKTGMYNLFFIACDPKLKGLVMSGK--TIWKNPNGYL 205
++ + + + + P+ ++G+Y +F L+G + K W+N G L
Sbjct: 125 AAVDAE-------SMVSPLKYPVEQSGLYCVF----TAPLEGSSEAYKITVTWENYFGNL 173
Query: 206 PGRMAPLMNFYVYMSLAYVVLSVIW--FIQYVRYWKDILQLQHCITAVITLGLFEMIL-- 261
P + F + LA L IW FI + RY D+LQ+Q I+ V+ L + ++
Sbjct: 174 DATDYPHL-FLNPILLAINCLIGIWWSFIMF-RYRHDLLQVQKYISGVVALSIVCTMVST 231
Query: 262 WFSEYANFNNTGIRPVVITTWVVTVGAVRKSLTRLLILCVSMGYGVVRPTLGGLTSKVLL 321
+ +AN V ++ + R+S L+L VS+GY +V P+LG L K +
Sbjct: 232 GYFYFANSKGYTTGSKVFAFFLSLAQSARQSYFGFLLLIVSLGYSIVVPSLGSLLRKCQI 291
Query: 322 LGATYFLASELLDITEFVGTISDISGRARLFLVL--PVAFLDAF-LILWIFTSLSKTLEQ 378
L F++S + F+ S + L ++ PV + F + LWI +L+ T+
Sbjct: 292 LAGLQFVSSCFFLSSLFISP----SNKESLVILFAAPVFLITLFAMFLWIVLALNNTIRD 347
Query: 379 LQAKRSSIKLDIYRKFSNALAVTVIASVIWIAYEVY----FKATDPFNERWQSAWIIT-A 433
L+ ++ ++K +Y + + ++A +A + + + + W+ W +
Sbjct: 348 LRIRKQTVKAQMYTRLWIVICFGIVAYASIVAANAILIGIYGQMNYYLKYWKLLWFLNYG 407
Query: 434 FWDVLAFALLCVICYLWAPSQNSQRYAYSEEVGEEYDE 471
+ D+L L+ I YLW P++N++R+A SE+V ++ DE
Sbjct: 408 YTDILVLILMLTILYLWRPTENNRRFAMSEQVAQDVDE 445
>sp|P32857|PTM1_YEAST Membrane protein PTM1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PTM1 PE=1 SV=2
Length = 523
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 86/367 (23%), Positives = 169/367 (46%), Gaps = 38/367 (10%)
Query: 169 PITKTGMYNL--FFIACDPKLKGLVMSGKTIWKNPNGYLPGRMAPLMNFYVYMSLAYVVL 226
PI +TG Y + F + K +V ++N G L G + Y +++AYVV
Sbjct: 155 PIKETGFYCVTAFRSSTSTKFNAVVN-----FRNAYGQLAGTEINKLPLYGLLAVAYVVA 209
Query: 227 SVIWFIQYVRYWKDILQLQHCITAVITLGLFEMILWFSEYANFN----NTGIRPVVITTW 282
++ + ++ ++L LQ + A E I ++ Y N GI+ ++
Sbjct: 210 MALYSFAFWKHKHELLPLQKYLLAFFVFLTAETIFVWAYYDLKNEKGDTAGIKVYMVFLS 269
Query: 283 VVTVGAVRKSLTRLLILCVSMGYGVVRPTLGG-LTSKVLLLGA-TYFLASELLDITEFVG 340
++T G V + + L+L +++GYG+V P L L + + GA TY + L
Sbjct: 270 ILTAGKV--TFSFFLLLIIALGYGIVYPKLNKTLMRRCQMYGALTYAICIGFL----IQS 323
Query: 341 TISDISGRARLFLVLPVAFLDAFLILW--IFTSLSKTLEQLQAKRSSIKLDIYRK----- 393
++D+ + L L+ + A +I + I S++KT+ L+ +R +KL++Y+K
Sbjct: 324 YLTDMEAPSPLILITLIPMALALIIFYYMIIRSMTKTVIYLKEQRQIVKLNMYKKLLYII 383
Query: 394 ---FSNALAVTVIASVIWIAYEVYFKATDPFNERWQSAWIITAFWDVLA-FALLCVICYL 449
F + LA ++++S I++ D + W+S + +T FW L F + I +L
Sbjct: 384 YASFLSVLAGSIVSSFIYVG----MNTIDMIEKNWRSRFFVTDFWPTLVYFIVFVTIAFL 439
Query: 450 WAPSQNSQRYAYSEEVGEE----YDEETQSLTRGKPEGDLSLVKQEKKEKDAGVTANISD 505
W P+ S A S+++ + D + L + D S++ E+ + + N +D
Sbjct: 440 WRPTDTSYMLAASQQLPTDPENVADFDLGDLQSFDDQDDASIITGERGIDEDDLNLNFTD 499
Query: 506 EDDVEED 512
+++ ++
Sbjct: 500 DEEGHDN 506
>sp|A6ZZS6|PTM1_YEAS7 Membrane protein PTM1 OS=Saccharomyces cerevisiae (strain YJM789)
GN=PTM1 PE=3 SV=1
Length = 523
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 86/367 (23%), Positives = 169/367 (46%), Gaps = 38/367 (10%)
Query: 169 PITKTGMYNL--FFIACDPKLKGLVMSGKTIWKNPNGYLPGRMAPLMNFYVYMSLAYVVL 226
PI +TG Y + F + K +V ++N G L G + Y +++AYVV
Sbjct: 155 PIKETGFYCVTAFRSSTSTKFNAVVN-----FRNAYGQLAGTEINKLPLYGLLAVAYVVA 209
Query: 227 SVIWFIQYVRYWKDILQLQHCITAVITLGLFEMILWFSEYANFNN----TGIRPVVITTW 282
++ + ++ ++L LQ + A E I ++ Y N GI+ ++
Sbjct: 210 MALYSFAFWKHKHELLPLQKYLLAFFVFLTAETIFVWAYYDLKNEKGDTAGIKVYMVFLS 269
Query: 283 VVTVGAVRKSLTRLLILCVSMGYGVVRPTLGG-LTSKVLLLGA-TYFLASELLDITEFVG 340
++T G V + + L+L +++GYG+V P L L + + GA TY + L
Sbjct: 270 ILTAGKV--TFSFFLLLIIALGYGIVYPKLNKTLMRRCQMYGALTYAICIGFL----IQS 323
Query: 341 TISDISGRARLFLVLPVAFLDAFLILW--IFTSLSKTLEQLQAKRSSIKLDIYRK----- 393
++D+ + L L+ + A +I + I S++KT+ L+ +R +KL++Y+K
Sbjct: 324 YLTDMEAPSPLILITLIPMALALIIFYYMIIRSMTKTVIYLKEQRQIVKLNMYKKLLYII 383
Query: 394 ---FSNALAVTVIASVIWIAYEVYFKATDPFNERWQSAWIITAFWDVLA-FALLCVICYL 449
F + LA ++++S I++ D + W+S + +T FW L F + I +L
Sbjct: 384 YASFLSVLAGSIVSSFIYVG----MNTIDMIEKNWRSRFFVTDFWPTLVYFIVFVTIAFL 439
Query: 450 WAPSQNSQRYAYSEEVGEE----YDEETQSLTRGKPEGDLSLVKQEKKEKDAGVTANISD 505
W P+ S A S+++ + D + L + D S++ E+ + + N +D
Sbjct: 440 WRPTDTSYMLAASQQLPTDPENVADFDLGDLQSFDDQDDASIITGERGIDEDDLNLNFTD 499
Query: 506 EDDVEED 512
+++ ++
Sbjct: 500 DEEGHDN 506
>sp|P38745|YHB7_YEAST Uncharacterized membrane protein YHL071W OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YHL017W PE=1
SV=1
Length = 532
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 94/405 (23%), Positives = 165/405 (40%), Gaps = 32/405 (7%)
Query: 81 ADEHSEMEHSTGLVQVVIFEAADRNNIGGSAYGGQRSICCTP---DLAKLEGCKQGEVIR 137
ADE + E V V +F+ D +IG G+ C DL E +G+ I
Sbjct: 60 ADEDDDGEG----VSVAVFDFQDYEHIGVRLPNGEIQYICDDYALDLGLCEDSSEGQFII 115
Query: 138 MPSATDINWPIVLN--------VQFSGNYLSTKMDNVDVPITKTGMYNLFFIACDPKLKG 189
+A D P + F+ L T D V I KTG Y +
Sbjct: 116 QETAID---PFTSKEHKLTSQILTFTQQELGTN-DKV-YSINKTGYYCV--TTSSFISSS 168
Query: 190 LVMSGKTIWKNPNGYLPGRMAPLMNFYVYMSLAYVVLSVIWFIQYVRYWKDILQLQHCIT 249
++N G L A M Y ++++AY V ++++ ++ ++L LQ I
Sbjct: 169 SKFKATVNFRNAYGQLDASEAYKMPIYAFLAVAYAVCTLVYSWLCWKHRHELLPLQRYIL 228
Query: 250 AVITLGLFEMILWFSEYANFNNTGIRPVVITTWVVTVG---AVRKSLTRLLILCVSMGYG 306
+ I + Y N G V + ++V + A + + T LL L +S+GYG
Sbjct: 229 VFCIFLTADTIFVWMYYIIENQKGNSSVALHVYMVFISIFSAGKMTFTLLLALLISLGYG 288
Query: 307 VVRPTLGGLTSKVLLLGATYFLASELLDITEFVGTISDISGRARLFLVLPVAF-LDAFLI 365
+V P L + + A + A + + + S+ L +P+ L AF
Sbjct: 289 IVYPKLDRTLLRRCQIFAIFTFAVCVAFLVQKYSQNSESLSNLILITAIPLVLCLFAFYY 348
Query: 366 LWIFTSLSKTLEQLQAKRSSIKLDIYRKF----SNALAVTVIASVIWIAYEVYFKATDPF 421
L + +S++KT+ L+ + +KL++YRK +L + + ++ V D
Sbjct: 349 LTL-SSMNKTMTYLREQNQVVKLNMYRKLIILCYISLFILFLGLLVSTFAYVGMDTVDMI 407
Query: 422 NERWQSAWIITAFWDVLAFALLCVI-CYLWAPSQNSQRYAYSEEV 465
+ W++ ++IT W + L+ VI + W P+ S A S ++
Sbjct: 408 EQYWKTEFLITDTWPSFVYFLVFVIFAFFWRPTSTSYLLACSHQL 452
>sp|Q148L1|GP108_BOVIN Protein GPR108 OS=Bos taurus GN=GPR108 PE=2 SV=1
Length = 548
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 66/167 (39%), Gaps = 17/167 (10%)
Query: 120 CTPDLAK-----LEGCKQGEVIRMPSATDINWPIVLNVQFSGNYLSTKMDNVDVPITKTG 174
PD AK L+G +QG + + +VL + N + V + G
Sbjct: 171 AAPDKAKSKPTGLQGDRQG-------VSGKDQELVLGLGHLNNSYNFSFHVVIGSRAEEG 223
Query: 175 MYNLFFIACDPKLKG----LVMSGKTIWKNPNGYLPGRMAPLMNFYVYMSLAYVVLSVIW 230
YNL F CD + G ++ KNP GYL PL Y+ MS ++ + W
Sbjct: 224 QYNLNFHNCDNSVPGREQPFDITVMIREKNPEGYLSAAEIPLFKLYMVMSACFLGAGIFW 283
Query: 231 FIQYVRYWKDILQLQHCITAVITLGLFEMILWFSEYANFNNTGIRPV 277
+ ++ ++ H + A +T +L+ S F N+ P+
Sbjct: 284 VSILCKNTYNVFKI-HWLMAALTFTKSVSLLFHSINYYFINSQGHPI 329
>sp|Q8BUV8|GP107_MOUSE Protein GPR107 OS=Mus musculus GN=Gpr107 PE=2 SV=2
Length = 551
Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 12/160 (7%)
Query: 172 KTGMYNLFFIACDP------KLKGLVMSGKTIWKNPNGYLPGRMAPLMNFYVYMSLAYVV 225
+ G+Y+L+F C + ++ KNPN YL PL YV M+L + +
Sbjct: 215 QEGLYSLYFHKCSGNNVKPGEQASFSLNIAITEKNPNSYLSAGEIPLPKLYVSMALFFFL 274
Query: 226 LSVIWFIQYVRYWKDILQLQHCITAVITLGLFEMILWFSEYANFNNTGIRPVVITTWVVT 285
IW + D+ ++ + A+ ++ +Y ++ G I W V
Sbjct: 275 SGTIWIHILRKRRNDVFKIHWLMAALPFTKSLSLVFHAIDYHYISSQGFP---IEGWAVV 331
Query: 286 ---VGAVRKSLTRLLILCVSMGYGVVRPTLGGLTSKVLLL 322
++ +L + I + G+ ++ L K+ ++
Sbjct: 332 YYITHLLKGALLFITIALIGTGWAFIKHILSDKDKKIFMI 371
>sp|Q9NPR9|GP108_HUMAN Protein GPR108 OS=Homo sapiens GN=GPR108 PE=2 SV=3
Length = 543
Score = 35.4 bits (80), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 135 VIRMPSATDINWPIVLNVQFSGNYLSTKMDNVDVPITKTGMYNLFFIACDPKLKG----L 190
VI+ PS D + +VL + N + V + G Y+L F C+ + G
Sbjct: 181 VIQGPSGKDKD--LVLGLSHLNNSYNFSFHVVIGSQAEEGQYSLNFHNCNNSVPGKEHPF 238
Query: 191 VMSGKTIWKNPNGYLPGRMAPLMNFYVYMSLAYVVLSVIW 230
++ KNP+G+L PL Y+ MS ++ + W
Sbjct: 239 DITVMIREKNPDGFLSAAEMPLFKLYMVMSACFLAAGIFW 278
>sp|Q5VW38|GP107_HUMAN Protein GPR107 OS=Homo sapiens GN=GPR107 PE=1 SV=1
Length = 600
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/162 (19%), Positives = 64/162 (39%), Gaps = 17/162 (10%)
Query: 172 KTGMYNLFFIACDPKLKGLVMSGKTIW--------KNPNGYLPGRMAPLMNFYVYMSLAY 223
+ G+Y+L+F C L + S K + KNP+ YL PL Y+ M+ +
Sbjct: 217 QEGLYSLYFHKC---LGKELPSDKFTFSLDIEITEKNPDSYLSAGEIPLPKLYISMAFFF 273
Query: 224 VVLSVIWFIQYVRYWKDILQLQHCITAVITLGLFEMILWFSEYANFNNTGIRPVVITTWV 283
+ IW + D+ ++ + A+ ++ +Y ++ G I W
Sbjct: 274 FLSGTIWIHILRKRRNDVFKIHWLMAALPFTKSLSLVFHAIDYHYISSQGFP---IEGWA 330
Query: 284 VT---VGAVRKSLTRLLILCVSMGYGVVRPTLGGLTSKVLLL 322
V ++ +L + I + G+ ++ L K+ ++
Sbjct: 331 VVYYITHLLKGALLFITIALIGTGWAFIKHILSDKDKKIFMI 372
>sp|Q14CZ8|HECAM_HUMAN Hepatocyte cell adhesion molecule OS=Homo sapiens GN=HEPACAM PE=1
SV=1
Length = 416
Score = 34.3 bits (77), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
Query: 424 RWQSAWIITAFWDVLAFALLCVICYLWAPSQNSQRYAYSEEVGEEYDEETQSLTRGKPEG 483
R S +II + + L +C W PS+ Q+ + E D+ L KPE
Sbjct: 237 RRSSLYIILSTGGIFLLVTLVTVCACWKPSKRKQKKLEKQNSLEYMDQNDDRL---KPEA 293
Query: 484 DLSLVKQEKKEKDAGVTANISDEDDVEEDK 513
D E++ K+ + D+D E ++
Sbjct: 294 DTLPRSGEQERKNPMALYILKDKDSPETEE 323
>sp|A4FUY1|HECAM_BOVIN Hepatocyte cell adhesion molecule OS=Bos taurus GN=HEPACAM PE=2
SV=1
Length = 418
Score = 33.5 bits (75), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 424 RWQSAWIITAFWDVLAFALLCVICYLWAPSQNS-QRYAYSEEVGEEYDEETQSLTRGKPE 482
R S +II + + L +C W PS+ S ++ ++ EY + QS R KPE
Sbjct: 237 RRSSLYIILSTGGIFLLVTLVTVCACWKPSKKSGKKRKLEKQNSMEYMD--QSDDRLKPE 294
Query: 483 GDLSLVKQEKKEKDAGVTANISDEDDVEEDK 513
D E++ K+ + D+D E ++
Sbjct: 295 ADTLPRSGEQERKNPMALYILKDKDSPEPEE 325
>sp|P58405|STRN3_RAT Striatin-3 OS=Rattus norvegicus GN=Strn3 PE=2 SV=2
Length = 794
Score = 32.7 bits (73), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 464 EVGEEYDEETQSLTRGKPEGDLSLVKQEKKEKDAGVTANISDEDDVEEDKRE 515
E ++ DEE + G PEG L + K + G+ A+++D+ D EE +E
Sbjct: 250 ENADDSDEEENDMIEGIPEGKDKLRIHKHKIGNEGLAADLTDDPDTEEALKE 301
>sp|Q9ERG2|STRN3_MOUSE Striatin-3 OS=Mus musculus GN=Strn3 PE=1 SV=1
Length = 796
Score = 32.7 bits (73), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 464 EVGEEYDEETQSLTRGKPEGDLSLVKQEKKEKDAGVTANISDEDDVEEDKRE 515
E ++ DEE + G PEG L + K + G+ A+++D+ D EE +E
Sbjct: 252 ENADDSDEEENDMIEGIPEGKDKLRIHKHKIGNEGLAADLTDDPDTEEALKE 303
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 184,795,941
Number of Sequences: 539616
Number of extensions: 7591571
Number of successful extensions: 20513
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 20477
Number of HSP's gapped (non-prelim): 32
length of query: 515
length of database: 191,569,459
effective HSP length: 122
effective length of query: 393
effective length of database: 125,736,307
effective search space: 49414368651
effective search space used: 49414368651
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)