Query 010204
Match_columns 515
No_of_seqs 208 out of 406
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 22:16:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010204.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010204hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2568 Predicted membrane pro 100.0 3E-113 6E-118 906.5 42.1 483 28-515 15-508 (518)
2 PF06814 Lung_7-TM_R: Lung sev 100.0 2.3E-67 4.9E-72 535.6 34.7 288 170-457 1-295 (295)
3 KOG2569 G protein-coupled seve 100.0 2.3E-39 5E-44 329.6 4.8 287 165-464 123-424 (440)
4 PF10192 GpcrRhopsn4: Rhodopsi 99.6 3E-13 6.4E-18 135.9 26.7 243 190-442 2-253 (257)
5 KOG4290 Predicted membrane pro 98.3 4.1E-05 8.9E-10 79.5 18.2 214 173-396 118-350 (429)
6 PF06664 MIG-14_Wnt-bd: Wnt-bi 89.1 30 0.00064 35.6 27.4 22 364-385 208-229 (298)
7 KOG2569 G protein-coupled seve 67.4 7.4 0.00016 41.7 4.5 57 192-248 327-391 (440)
8 COG4736 CcoQ Cbb3-type cytochr 62.3 6.7 0.00015 31.2 2.4 17 441-457 21-37 (60)
9 PF09437 Pombe_5TM: Pombe spec 60.2 3.1 6.6E-05 39.8 0.2 139 166-317 36-188 (256)
10 PF05297 Herpes_LMP1: Herpesvi 58.0 3.3 7.2E-05 42.6 0.0 18 431-448 168-185 (381)
11 PF06123 CreD: Inner membrane 55.0 38 0.00082 37.1 7.4 79 165-248 239-330 (430)
12 PF11368 DUF3169: Protein of u 50.4 25 0.00054 35.3 4.9 20 389-408 7-26 (248)
13 KOG1734 Predicted RING-contain 47.7 1.3E+02 0.0027 31.2 9.2 46 352-397 89-143 (328)
14 PF01528 Herpes_glycop: Herpes 41.5 4.9E+02 0.011 28.2 19.4 78 168-251 35-123 (374)
15 PF13491 DUF4117: Domain of un 41.1 2.8E+02 0.0061 25.5 10.1 67 196-262 41-108 (171)
16 PF14089 KbaA: KinB-signalling 40.5 3.5E+02 0.0077 26.2 11.2 61 296-362 109-170 (180)
17 PF10160 Tmemb_40: Predicted m 40.3 2.9E+02 0.0062 28.4 10.5 77 349-433 12-88 (261)
18 PF01534 Frizzled: Frizzled/Sm 35.0 5.7E+02 0.012 27.0 13.9 30 209-239 41-70 (328)
19 PLN03148 Blue copper-like prot 33.7 1.4E+02 0.0031 28.5 6.9 19 113-136 95-113 (167)
20 PF12725 DUF3810: Protein of u 31.8 1.6E+02 0.0034 30.9 7.5 55 352-408 18-75 (318)
21 PF08733 PalH: PalH/RIM21; In 30.8 6.8E+02 0.015 26.6 21.0 57 387-450 257-314 (348)
22 KOG1278 Endosomal membrane pro 30.4 7.5E+02 0.016 28.4 12.5 89 355-447 430-534 (628)
23 TIGR02908 CoxD_Bacillus cytoch 29.6 4.1E+02 0.009 23.8 9.1 53 241-293 50-102 (110)
24 COG3771 Predicted membrane pro 29.3 3.1E+02 0.0067 23.7 7.2 31 359-389 49-79 (97)
25 PF03904 DUF334: Domain of unk 27.0 6.7E+02 0.014 25.3 10.8 39 370-408 130-168 (230)
26 PRK02983 lysS lysyl-tRNA synth 26.7 7.2E+02 0.016 30.8 12.7 32 427-458 201-232 (1094)
27 PRK10263 DNA translocase FtsK; 26.3 4.2E+02 0.0091 33.4 10.5 42 198-239 60-102 (1355)
28 CHL00043 cemA envelope membran 24.7 81 0.0017 32.3 3.6 39 335-374 209-247 (261)
29 PF12292 DUF3624: Protein of u 24.3 3.6E+02 0.0078 22.6 6.7 47 237-289 11-57 (77)
30 PF09726 Macoilin: Transmembra 23.7 2.9E+02 0.0063 32.3 8.3 45 364-408 124-168 (697)
31 PRK12768 CysZ-like protein; Re 23.1 4.4E+02 0.0096 26.6 8.6 32 423-455 59-90 (240)
32 PF03040 CemA: CemA family; I 22.2 74 0.0016 32.0 2.8 39 335-374 178-216 (230)
33 PF09971 DUF2206: Predicted me 21.7 1E+03 0.022 25.6 13.4 49 361-409 187-236 (367)
34 PF06781 UPF0233: Uncharacteri 21.2 1.6E+02 0.0035 25.2 4.3 36 210-245 27-62 (87)
35 TIGR00739 yajC preprotein tran 20.8 1.3E+02 0.0029 25.3 3.7 25 354-378 6-30 (84)
36 PRK02507 proton extrusion prot 20.3 1.1E+02 0.0023 33.6 3.7 39 335-374 370-408 (422)
No 1
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=2.7e-113 Score=906.47 Aligned_cols=483 Identities=45% Similarity=0.776 Sum_probs=438.2
Q ss_pred ccceeeeecCCCccccCCeeeecCCCccccccC-----CCCCc--ceeeecceeecccccccccCccccccceEEEEEEe
Q 010204 28 SNASIHTYDNNPFRDVGNSALLPGGSEGLAASL-----DGSRS--FIRFENVTFWRTKAAADEHSEMEHSTGLVQVVIFE 100 (515)
Q Consensus 28 ~~~si~~y~~~~f~~~~~~~~~~~~~~Gmys~~-----~~~~~--~I~f~~v~f~~~~~~~~~~~~~~~~~g~v~~vIfe 100 (515)
+.+++|+|.+++|....|++.++|+++|||++. ++.|| +|||+++++.|++++++++| +.|.|+++|||
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ys~~~~d~~~s~~p~~~~~f~~~t~~~~~~~~~~~n----~~~~v~~~ife 90 (518)
T KOG2568|consen 15 AWLSFLSYVYSEFASELNAQHFHGVSEGIYSSFVSDLFGSLDPESFIRFDSITLVRTSESADEQN----SNGLVEALIFE 90 (518)
T ss_pred hhHhheechhhhhhhhhcceeeeccccccccccHHHhcCCCCccccccceeEEEEEccCcccccc----cccceeeeeee
Confidence 489999999999999999999999999999993 55555 99999999999887555443 35789999999
Q ss_pred eccccccccccCCCceeeeeChhhhccCCCCCCCEEecCCCCCCCCceEEEEeeccCcccccCCCeeeeeCCCCcEEEEE
Q 010204 101 AADRNNIGGSAYGGQRSICCTPDLAKLEGCKQGEVIRMPSATDINWPIVLNVQFSGNYLSTKMDNVDVPITKTGMYNLFF 180 (515)
Q Consensus 101 ~~D~~~iG~~~~~g~~~~~C~~~~~~~g~C~~g~~Ii~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~y~I~ktG~Y~v~~ 180 (515)
|||+++||++.++|++.||||+++++.|.|++|++|+.|+++||.||++..+.+++++.+..++|..|+|++||+||+++
T Consensus 91 ~kd~~~iG~~~~~~e~~~~C~~~~~~~g~c~~~~~i~~~~~~dp~~~~~~~~~~t~~~~e~~m~~~~~~I~ktG~Y~v~~ 170 (518)
T KOG2568|consen 91 FKDRNKIGGSDDDGEKLYICTPDLADTGSCKEGEVIYLPNPTDPEWPKLNSVILTFNDAEVGMSPPAYPIKKTGYYCVYF 170 (518)
T ss_pred hhhhhccCCcCCCCceEEecCHhHHhcCCcCCCceEEecCCCCCCcccccceeecccccccCCCCceEEeccCcEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999998877888999999999999999999
Q ss_pred EeeCCCCCceEEEEEEEEECCCCCCCCCCcCchhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHH
Q 010204 181 IACDPKLKGLVMSGKTIWKNPNGYLPGRMAPLMNFYVYMSLAYVVLSVIWFIQYVRYWKDILQLQHCITAVITLGLFEMI 260 (515)
Q Consensus 181 ~~C~~~~~~~~~~g~v~f~N~~GyLpA~e~pll~fY~~msi~Y~vl~i~W~~~~~k~r~~ll~Iq~~I~avi~l~~le~~ 260 (515)
..|+++.++.+.+|+|+||||||||||+++|++|||++|+++|.+++++|+++|+|||||++|||+||+++|+|+|+|++
T Consensus 171 ~~~~~s~~~~~~~~~v~wkNpyGyL~a~~~Plm~fy~~m~laYvllgllW~~~~~~y~~diL~lQ~~I~~Vi~lgm~E~a 250 (518)
T KOG2568|consen 171 ISCDSSLESYKATGSVNWKNPYGYLPASDAPLMPFYGFMCLAYVLLGLLWFFQCAQYWHDILPLQKYITAVIALGMAETA 250 (518)
T ss_pred EeecCccccccccceEEEECCCCCcChhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcccCCCcchhhhHHhHHHHHHHHHHHHHHHHHHhcccccccccCCccceEeehhHHHHHHHHHHHHHhhhc
Q 010204 261 LWFSEYANFNNTGIRPVVITTWVVTVGAVRKSLTRLLILCVSMGYGVVRPTLGGLTSKVLLLGATYFLASELLDITEFVG 340 (515)
Q Consensus 261 ~~~~~Y~~~N~~G~~~~~~~v~~~i~~a~k~tlsf~LlLlVslGYGvVkp~L~~~~~kv~~L~v~yfvas~~~~i~~~~g 340 (515)
++|.+|++.|.+|.+|++.++|+++++|+|+|++|+|+|+||||||||||+||+.+.|+..++++|+++++++++++.+|
T Consensus 251 v~y~~y~~~N~tG~~~~~~~~~a~i~sa~K~Tlsr~LlLIVSlGYGIVkP~Lg~~l~rv~~ig~~~~i~s~i~~l~~~~g 330 (518)
T KOG2568|consen 251 VFYSEYANFNSTGMSPKVYTVFASILSAIKKTLSRLLLLIVSLGYGIVKPTLGGTLLRVCQIGVIYFIASEILGLARVIG 330 (518)
T ss_pred HHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcceEecCcchHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCc
Q 010204 341 TISDISGRARLFLVLPVAFLDAFLILWIFTSLSKTLEQLQAKRSSIKLDIYRKFSNALAVTVIASVIWIAYEVYFKATDP 420 (515)
Q Consensus 341 ~~~d~s~~~~L~~~lpla~~~~~f~~WI~~sL~~Ti~~L~~~rq~~KL~lYr~f~~~lv~~V~~s~i~i~~~i~~~~~~~ 420 (515)
+++|.++.+++|.++|+|+++++|++|||.||++|+|+||.|||++||+|||||+++|+++|+.+++|++++.++.+.++
T Consensus 331 ~~se~~~~~~lf~~ip~ai~d~~f~~wIF~SL~~Tlk~Lr~rRn~vKl~lYr~F~n~l~~~Vvas~~~i~~~~~~~~~~~ 410 (518)
T KOG2568|consen 331 NISELSSLLILFAALPLAILDAAFIYWIFISLAKTLKKLRLRRNIVKLSLYRKFTNTLAFSVVASFAFILVETIFYSIMS 410 (518)
T ss_pred CcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999988899999999999999999999999999999999999999999999999999999999999999987777678
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccccccCccccc-ccccccC--CCCCC-cchhhhhhhccc
Q 010204 421 FNERWQSAWIITAFWDVLAFALLCVICYLWAPSQNSQRYAYSEEVGEEYDEE-TQSLTRG--KPEGD-LSLVKQEKKEKD 496 (515)
Q Consensus 421 ~~~~Wk~~W~i~~~w~~L~f~~l~~i~~lWRPt~nn~~~A~s~e~~~d~dee-~~~l~~~--~~~~~-~~~~~~~~~~~~ 496 (515)
++++||.+|+++++|++|+|.++++||+|||||+||+|||++++.+||+||| +.++... ..++. .+..+.+... .
T Consensus 411 ~~~~Wk~~Wv~~a~W~~l~~~iLvvI~~LWrPS~nn~ryA~s~l~~d~~ee~~~~~~~~~~~~~~~~~~~~~k~~~~~-~ 489 (518)
T KOG2568|consen 411 CNKDWKERWVDTAFWPLLFFLILVVIMFLWRPSQNNQRYAFSPLSDDDEEEEEEESLDLLESLTEGAKSRADKRKSLG-K 489 (518)
T ss_pred HHHHHHHhhhhhccHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhhhhhhhcccccccCccccccccccc-c
Confidence 9999999999999999999999999999999999999999999998887665 3444332 22222 1111111111 0
Q ss_pred cccccCCCCCCCchhhccC
Q 010204 497 AGVTANISDEDDVEEDKRE 515 (515)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~ 515 (515)
+-...+.+.+||+||+|||
T Consensus 490 ~~~~~~~~~~dDle~~~~~ 508 (518)
T KOG2568|consen 490 ADPNKALNFEDDLEEVEEE 508 (518)
T ss_pred ccccchhchhhhhhccccc
Confidence 1112333557888999986
No 2
>PF06814 Lung_7-TM_R: Lung seven transmembrane receptor; InterPro: IPR009637 This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.; GO: 0016021 integral to membrane
Probab=100.00 E-value=2.3e-67 Score=535.59 Aligned_cols=288 Identities=39% Similarity=0.747 Sum_probs=271.5
Q ss_pred eCCCCcEEEEEEeeCCCC----CceEEEEEEEEECCCCCCCCCCcCchhHHHHHHHHHHHHHHHHHHHHHHhccchhHHH
Q 010204 170 ITKTGMYNLFFIACDPKL----KGLVMSGKTIWKNPNGYLPGRMAPLMNFYVYMSLAYVVLSVIWFIQYVRYWKDILQLQ 245 (515)
Q Consensus 170 I~ktG~Y~v~~~~C~~~~----~~~~~~g~v~f~N~~GyLpA~e~pll~fY~~msi~Y~vl~i~W~~~~~k~r~~ll~Iq 245 (515)
|+|||+||+++++|+|+. ++.+++|+++|+||+|||||+|+|+||+|++|+++|++++++|++.++|||++++|+|
T Consensus 1 i~~~G~Y~~~~~~C~~~~~~~~~~~~~~~~i~~~N~~gyL~a~~~pl~~~y~~~~i~y~~~~~~W~~~~~~~~~~~~~ih 80 (295)
T PF06814_consen 1 ITKTGYYCVFFANCNPSTSSSNSNISFEGSITFKNPYGYLPAGEYPLPPFYGVMSIVYAVLLIIWLFLCFKNRKSVLPIH 80 (295)
T ss_pred CCCceEEEEEEEEcCCccccCCcceEEEEEEEEECCCCCCChhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHH
Confidence 689999999999998763 6789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhhHHhHHHHHHHHHHHHHHHHHHhcccccccccCCccceEeehhHH
Q 010204 246 HCITAVITLGLFEMILWFSEYANFNNTGIRPVVITTWVVTVGAVRKSLTRLLILCVSMGYGVVRPTLGGLTSKVLLLGAT 325 (515)
Q Consensus 246 ~~I~avi~l~~le~~~~~~~Y~~~N~~G~~~~~~~v~~~i~~a~k~tlsf~LlLlVslGYGvVkp~L~~~~~kv~~L~v~ 325 (515)
++|+++++++++|+++++.+|++.|.+|.++.++.+++++++++|++++|+++|+||+|||++||+|+++++|+++++++
T Consensus 81 ~~i~~vl~l~~~~~~~~~~~y~~~n~~G~~~~~~~~~~~i~~~~k~~~~~~llllis~Gygivkp~L~~~~~~v~~l~i~ 160 (295)
T PF06814_consen 81 YLILAVLILKMLELAFWFIYYHYINKTGTPSEGWMIFAYIFSALKRTLSFFLLLLISLGYGIVKPSLGRREKKVLMLVIL 160 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcchheeccccCcceeehhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccccCCcc--chhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 010204 326 YFLASELLDITEFVGTISDISG--RARLFLVLPVAFLDAFLILWIFTSLSKTLEQLQAKRSSIKLDIYRKFSNALAVTVI 403 (515)
Q Consensus 326 yfvas~~~~i~~~~g~~~d~s~--~~~L~~~lpla~~~~~f~~WI~~sL~~Ti~~L~~~rq~~KL~lYr~f~~~lv~~V~ 403 (515)
|++++.+..+....+...+.+. ...+++++|++++++++++||+.+|++|+++||+|||++||+|||+|+++++++++
T Consensus 161 ~~v~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~wi~~sL~~t~~~lk~~~q~~KL~lyr~f~~~li~~v~ 240 (295)
T PF06814_consen 161 YFVFSNIAYIIREESSPSDSSYASWNFIFFLLPLCILDLFFIVWIFRSLSKTIRDLKARRQTAKLSLYRRFYNVLIAYVV 240 (295)
T ss_pred HHHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988878777665555433 24678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-hhhhhcCccchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 010204 404 ASVIWIAYE-VYFKATDPFNERWQSAWIITAFWDVLAFALLCVICYLWAPSQNSQ 457 (515)
Q Consensus 404 ~s~i~i~~~-i~~~~~~~~~~~Wk~~W~i~~~w~~L~f~~l~~i~~lWRPt~nn~ 457 (515)
++++++.++ +.++..++.+++||++|+.+++|++++|+++++|+|+||||+|||
T Consensus 241 ~~~i~~~~~~~~~~~~~~~~~~W~~~W~~~~~~~~l~~~~~~~i~~lwRPs~~n~ 295 (295)
T PF06814_consen 241 FSRIFVVLSSIIFNTSDSIEKPWKYQWFIEAFWELLYFVFLVAIMYLWRPSENNQ 295 (295)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHhHHHHHHHHHHHHHHHHHHheeCCCCCCc
Confidence 999998877 566777788999999999999999999999999999999999997
No 3
>KOG2569 consensus G protein-coupled seven transmembrane receptor [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-39 Score=329.55 Aligned_cols=287 Identities=21% Similarity=0.325 Sum_probs=243.4
Q ss_pred CeeeeeCCCCcEEEEEEeeCCCCCceEEEEEEEEEC---CCC---CCCCCCcCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 010204 165 NVDVPITKTGMYNLFFIACDPKLKGLVMSGKTIWKN---PNG---YLPGRMAPLMNFYVYMSLAYVVLSVIWFIQYVRYW 238 (515)
Q Consensus 165 ~~~y~I~ktG~Y~v~~~~C~~~~~~~~~~g~v~f~N---~~G---yLpA~e~pll~fY~~msi~Y~vl~i~W~~~~~k~r 238 (515)
.++|+++.+|.|.++++||.|. ...++..+++..| |+| ||||++++++.+|..|+++|+..++.|.++++|++
T Consensus 123 ~~~~~~kd~~~y~l~f~nc~~~-~~~sm~V~~~~~~~~~p~g~~dyl~ag~~~Lp~ly~~~sl~Yl~~~v~w~~l~~~sk 201 (440)
T KOG2569|consen 123 SHHYPLKDPGQYSLFFANCVPE-TKGSMVVRVEMYNLLEPNGSRDYLSAGETSLPRLYFDFSLLYLDFLVFWCYLLKQSK 201 (440)
T ss_pred eEEecCCCCceEEEEEeecccc-ccceEEEEEEeeeccCCCCcccccccccccCchhHHHHHHHHHHhhhheeeeEeech
Confidence 4689999999999999999876 4667777777765 677 99999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhhHHhHHHHHHHHHHHHHHHHHHhcccccccccCCccce
Q 010204 239 KDILQLQHCITAVITLGLFEMILWFSEYANFNNTGIRPVVITTWVVTVGAVRKSLTRLLILCVSMGYGVVRPTLGGLTSK 318 (515)
Q Consensus 239 ~~ll~Iq~~I~avi~l~~le~~~~~~~Y~~~N~~G~~~~~~~v~~~i~~a~k~tlsf~LlLlVslGYGvVkp~L~~~~~k 318 (515)
+.+++||.+|.+++.++.+..+++..+|+++.++| .++||.+..+|++++|+.+.|.++.+++.||+++||.|.+++||
T Consensus 202 ~~v~rIh~lma~lV~lKsl~l~~~al~k~~~sk~g-~~~gw~vl~yI~~~lkg~llf~tivligTgwSflk~~l~dkekk 280 (440)
T KOG2569|consen 202 SVVYRIHDLMAVLVFLKSLSLICHALNKHYVSKTG-TVHGWAVLFYIFHFLKGVLLFTTIVLIGTGWSFLKPKLQDKEKK 280 (440)
T ss_pred HHHHHHHHHHHHHHhHcchHHHhhccceEEEEecC-ceeeeeehhhHHHHHhhhhheeEEEeeccCceeechhhccccce
Confidence 99999999999999999999999999999999999 48899999999999999999999999999999999999999999
Q ss_pred Eeehh----HHHHHHHHHHHHHhhhcc--ccCCccchhhHHhhHHHHHHHHH--HHHHHHHHHHHHH-HHHHHhhhhhHH
Q 010204 319 VLLLG----ATYFLASELLDITEFVGT--ISDISGRARLFLVLPVAFLDAFL--ILWIFTSLSKTLE-QLQAKRSSIKLD 389 (515)
Q Consensus 319 v~~L~----v~yfvas~~~~i~~~~g~--~~d~s~~~~L~~~lpla~~~~~f--~~WI~~sL~~Ti~-~L~~~rq~~KL~ 389 (515)
++++. ++.++++++.+ ..+. ++..++. .+|+++.+.||.++. ++|.+++|.+|-+ +.+++++.+||.
T Consensus 281 v~miviplqvlania~Iv~d---Ete~~~q~~~tw~-~if~lvd~~cc~ai~fpIvwSi~~L~E~s~tDgkaa~nl~kL~ 356 (440)
T KOG2569|consen 281 VLMIVIPLQVLANIASIVTD---ETEPLTQDWVTWN-QIFLLVDLKCCCAILFPIVWSIRHLRETSKTDGKAAANLIKLP 356 (440)
T ss_pred EEEEEecHHHHHHhHheeec---CCCcchhhhhhhh-heeeeecceeeeEEeeeeeeehhhhhhccCCcchhhcCcccch
Confidence 98853 33444443321 1111 0111221 355666666666644 8888888888886 688999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccccccc
Q 010204 390 IYRKFSNALAVTVIASVIWIAYEVYFKATDPFNERWQSAWIITAFWDVLAFALLCVICYLWAPSQNSQRYAYSEE 464 (515)
Q Consensus 390 lYr~f~~~lv~~V~~s~i~i~~~i~~~~~~~~~~~Wk~~W~i~~~w~~L~f~~l~~i~~lWRPt~nn~~~A~s~e 464 (515)
+||+||.++++|+++|++.+.. ++. ....|++|+..++.|+.++++++.++|+|||.+.|+|+...+|
T Consensus 357 lfrqfyi~vi~yiyftrIvv~~---l~~----~~~fky~W~~~~a~E~at~aFy~l~gykFRP~~~~~Yf~vdde 424 (440)
T KOG2569|consen 357 LFRQFYIVVIGYIYFTRIVVFA---LKT----IAVFKYQWLSFAAEEMATLAFYVLMGYKFRPVESNEYFVVDDE 424 (440)
T ss_pred HHHHHHhhhhhhhhhhhhhhhh---hhh----ccceeeeeHHHHHHHHHHHHHHhhheeeeeecccCCccccCch
Confidence 9999999999999999997642 333 3468999999999999999999999999999999999987554
No 4
>PF10192 GpcrRhopsn4: Rhodopsin-like GPCR transmembrane domain; InterPro: IPR019336 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). This region of 270 amino acids is the seven transmembrane alpha-helical domains included within five GPCRRHODOPSN4 motifs of a G-protein-coupled-receptor (GPCR) protein, conserved from nematodes to humans [].
Probab=99.61 E-value=3e-13 Score=135.90 Aligned_cols=243 Identities=15% Similarity=0.187 Sum_probs=170.6
Q ss_pred eEEEEEEEEECCC----CCCCCCCcCchhHHHHHHHHHHHHHHHHHH--HHHHhccchhHHHHHHHHHHHHHHHHHHHHH
Q 010204 190 LVMSGKTIWKNPN----GYLPGRMAPLMNFYVYMSLAYVVLSVIWFI--QYVRYWKDILQLQHCITAVITLGLFEMILWF 263 (515)
Q Consensus 190 ~~~~g~v~f~N~~----GyLpA~e~pll~fY~~msi~Y~vl~i~W~~--~~~k~r~~ll~Iq~~I~avi~l~~le~~~~~ 263 (515)
.+++.++++.||+ .|+|++|.+.+++|.++.++|.++.++-.. ...+.|+..-++.+++++.+++..+..++..
T Consensus 2 ~~~~y~i~l~N~~~~~~~hfS~de~gi~~~~~~~~~~y~vl~~~~~~~~~~l~~~~~~h~~~~l~~~~l~l~~~s~~l~~ 81 (257)
T PF10192_consen 2 LKIEYEIWLTNGGDFWTSHFSADEQGILEIYLLFLLLYIVLSIISIYSIQSLKKRGLMHPVYKLFSAALLLQFLSLLLNL 81 (257)
T ss_pred CceEEEEEEEeCCCccccccChhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999996 699999999999999999999999888544 3456677889999999999999998888765
Q ss_pred HHhhhhcccCCCcchhhhHHhHHHHHHHHHHHHHHHHHHhcccccccccCCcc-ceEeehhHHHHHHHHHHHHHhhhccc
Q 010204 264 SEYANFNNTGIRPVVITTWVVTVGAVRKSLTRLLILCVSMGYGVVRPTLGGLT-SKVLLLGATYFLASELLDITEFVGTI 342 (515)
Q Consensus 264 ~~Y~~~N~~G~~~~~~~v~~~i~~a~k~tlsf~LlLlVslGYGvVkp~L~~~~-~kv~~L~v~yfvas~~~~i~~~~g~~ 342 (515)
.+|.....+|.+.....+.+.++.++.+.+...+++++|.||++.|++++... .+...+.+++.+...++.+.++....
T Consensus 82 ih~~~ya~nG~G~~~l~~~g~i~~~~s~~~~~lLLllla~GwTi~~~~~s~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~ 161 (257)
T PF10192_consen 82 IHYIVYAYNGVGIPFLKVLGQIFDILSQILFLLLLLLLAKGWTITRSRLSQSNSVKLIVFIILYVVLQVILFIWENRFYF 161 (257)
T ss_pred HHHHHHHccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHcccccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 55555555666666789999999999999999999999999999999998543 34445566666666666666332111
Q ss_pred cCC--ccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCc
Q 010204 343 SDI--SGRARLFLVLPVAFLDAFLILWIFTSLSKTLEQLQAKRSSIKLDIYRKFSNALAVTVIASVIWIAYEVYFKATDP 420 (515)
Q Consensus 343 ~d~--s~~~~L~~~lpla~~~~~f~~WI~~sL~~Ti~~L~~~rq~~KL~lYr~f~~~lv~~V~~s~i~i~~~i~~~~~~~ 420 (515)
++. .....-....++.++-.+..+|...++.+|++ ++|+..|.+.|.+|...-....+.-=+..+ .+..
T Consensus 162 d~~~~~~~y~s~pGy~li~lri~~~~~F~~~~~~t~~---~~~~~~k~~Fy~~f~~~~~lWFl~~Pv~~~----ia~~-- 232 (257)
T PF10192_consen 162 DPHSYLYFYDSWPGYILIALRIVLAIWFIYGLYQTIS---KEKDPEKRKFYLPFGIIFSLWFLSLPVIVI----IAHF-- 232 (257)
T ss_pred CcccceeecccHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHh--
Confidence 111 11112234455566777778898898888754 456678999999997653332221111111 1121
Q ss_pred cchhhHHHHHHHHHHHHHHHHH
Q 010204 421 FNERWQSAWIITAFWDVLAFAL 442 (515)
Q Consensus 421 ~~~~Wk~~W~i~~~w~~L~f~~ 442 (515)
+++.||.+. ++.+...+.++.
T Consensus 233 v~~~~R~kv-v~~~~~~~~~~~ 253 (257)
T PF10192_consen 233 VDPWVREKV-VTGGNLLIQFIA 253 (257)
T ss_pred ccHHHHHHH-HHHHHHHHHHHH
Confidence 456677775 555555555543
No 5
>KOG4290 consensus Predicted membrane protein [Function unknown]
Probab=98.30 E-value=4.1e-05 Score=79.48 Aligned_cols=214 Identities=15% Similarity=0.167 Sum_probs=136.6
Q ss_pred CCcEEEEEEeeCC-----CCCceEEEEEEEEECC-------CCC-CCCCCcCchhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010204 173 TGMYNLFFIACDP-----KLKGLVMSGKTIWKNP-------NGY-LPGRMAPLMNFYVYMSLAYVVLSVIWFIQYVRYWK 239 (515)
Q Consensus 173 tG~Y~v~~~~C~~-----~~~~~~~~g~v~f~N~-------~Gy-LpA~e~pll~fY~~msi~Y~vl~i~W~~~~~k~r~ 239 (515)
+-.+.|..+.|.+ +..-.++...+...|| .+| .+++|-.++.+|..|.++|+++.++.+...+ |
T Consensus 118 p~~W~v~l~acytCqw~dss~~ntI~ydi~LtNPn~ea~~pft~~fS~deqnlie~fll~llvY~vL~~iq~~av~---r 194 (429)
T KOG4290|consen 118 PQTWHVFLAACYTCQWDDSSQMNTIGYDILLTNPNIEAIDPFTLPFSLDEQNLIEAFLLMLLVYMVLVLIQGLAVT---R 194 (429)
T ss_pred cceeeeeeeecccccccCcCccccccceEEEeCCcccccCccccceeeccchHHHHHHHHHHHHHHHHHHHHHHHh---c
Confidence 4466677666642 1122355556666676 355 8999999999999999999999999888777 4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhhHHhHHHHHHHHHHHHHHHHHHhcccccccccCCccceE
Q 010204 240 DILQLQHCITAVITLGLFEMILWFSEYANFNNTGIRPVVITTWVVTVGAVRKSLTRLLILCVSMGYGVVRPTLGGLTSKV 319 (515)
Q Consensus 240 ~ll~Iq~~I~avi~l~~le~~~~~~~Y~~~N~~G~~~~~~~v~~~i~~a~k~tlsf~LlLlVslGYGvVkp~L~~~~~kv 319 (515)
+..|.|.-.++++....++..+.-++|-.+-++|....-....+.++.-....-...|++..++||.|+|+.-... +++
T Consensus 195 km~P~~~il~vlvtm~lv~~~licanllhfa~dG~Gep~~~~aaEvldisS~~~~~lLLi~LakGW~i~r~~~s~~-~wd 273 (429)
T KOG4290|consen 195 KMLPSWLILLVLVTMFLVQAGLICANLLHFAKDGFGEPKFFDAAEVLDISSSLPAYLLLIWLAKGWVIFRVAASMS-RWD 273 (429)
T ss_pred ccCchHhHHHHHHHHHHHHHHHHHHHHHHHhhccCCceeecCHHHHHHHHhhHHHHHHHHHHhccceEEeehhhcc-ccc
Confidence 5788888877777777765555433333334555543345566788888888899999999999999999987652 222
Q ss_pred eeh-hHHHHHHHHHHHHHhhhccc---c--CCccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 010204 320 LLL-GATYFLASELLDITEFVGTI---S--DISGRARLFLVLPVAFLDAFLILWIFTSLSKTLEQLQAKRSSIKLDIYRK 393 (515)
Q Consensus 320 ~~L-~v~yfvas~~~~i~~~~g~~---~--d~s~~~~L~~~lpla~~~~~f~~WI~~sL~~Ti~~L~~~rq~~KL~lYr~ 393 (515)
..- .+.|.....++.+.+....+ . |.-..|. ...+.+++.++-+|.+..+.++++. .+.+.|...|-+
T Consensus 274 s~m~wvf~~~f~~vL~~W~~tev~dv~hd~d~y~nwp---G~~viilRii~a~wflielr~~ik~---EhStkK~eFl~h 347 (429)
T KOG4290|consen 274 SPMKWVFFTSFVFVLTPWFWTEVIDVMHDNDCYNNWP---GEVVIILRIIVAFWFLIELRVPIKL---EHSTKKCEFLSH 347 (429)
T ss_pred cchhhhhhhhhhhheeehhhcCceeeeechhhhhccc---hHHHHHHHHHHHHHHHHHeeeehhh---hhHHHHHHHHHH
Confidence 211 22222222222222221110 0 1011121 2334467888899999888888764 345567777777
Q ss_pred HHH
Q 010204 394 FSN 396 (515)
Q Consensus 394 f~~ 396 (515)
|..
T Consensus 348 fga 350 (429)
T KOG4290|consen 348 FGA 350 (429)
T ss_pred hcc
Confidence 654
No 6
>PF06664 MIG-14_Wnt-bd: Wnt-binding factor required for Wnt secretion
Probab=89.05 E-value=30 Score=35.61 Aligned_cols=22 Identities=14% Similarity=0.394 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 010204 364 LILWIFTSLSKTLEQLQAKRSS 385 (515)
Q Consensus 364 f~~WI~~sL~~Ti~~L~~~rq~ 385 (515)
+++|++..+.++.++++.++..
T Consensus 208 Y~l~ll~li~rs~~~i~~~~~~ 229 (298)
T PF06664_consen 208 YFLYLLFLIIRSFSEIRNKRYF 229 (298)
T ss_pred HHHHHHHHHHHHHHHhccccHH
Confidence 7889999999998888866665
No 7
>KOG2569 consensus G protein-coupled seven transmembrane receptor [Signal transduction mechanisms]
Probab=67.41 E-value=7.4 Score=41.70 Aligned_cols=57 Identities=9% Similarity=0.122 Sum_probs=50.4
Q ss_pred EEEEEEEEC--------CCCCCCCCCcCchhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Q 010204 192 MSGKTIWKN--------PNGYLPGRMAPLMNFYVYMSLAYVVLSVIWFIQYVRYWKDILQLQHCI 248 (515)
Q Consensus 192 ~~g~v~f~N--------~~GyLpA~e~pll~fY~~msi~Y~vl~i~W~~~~~k~r~~ll~Iq~~I 248 (515)
+.--++|.= ++|++.+.+.|++-|+-++.++.+-+...|+..+.+.+..++++|+..
T Consensus 327 i~fpIvwSi~~L~E~s~tDgkaa~nl~kL~lfrqfyi~vi~yiyftrIvv~~l~~~~~fky~W~~ 391 (440)
T KOG2569|consen 327 ILFPIVWSIRHLRETSKTDGKAAANLIKLPLFRQFYIVVIGYIYFTRIVVFALKTIAVFKYQWLS 391 (440)
T ss_pred EeeeeeeehhhhhhccCCcchhhcCcccchHHHHHHhhhhhhhhhhhhhhhhhhhccceeeeeHH
Confidence 344567776 899999999999999999999999999999999999999999999855
No 8
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=62.30 E-value=6.7 Score=31.23 Aligned_cols=17 Identities=18% Similarity=0.583 Sum_probs=13.5
Q ss_pred HHHHHHhhhcccCCCCC
Q 010204 441 ALLCVICYLWAPSQNSQ 457 (515)
Q Consensus 441 ~~l~~i~~lWRPt~nn~ 457 (515)
++++++.|.+||.....
T Consensus 21 ~fiavi~~ayr~~~K~~ 37 (60)
T COG4736 21 FFIAVIYFAYRPGKKGE 37 (60)
T ss_pred HHHHHHHHHhcccchhh
Confidence 46778889999998764
No 9
>PF09437 Pombe_5TM: Pombe specific 5TM protein; InterPro: IPR018291 This entry represents a group of proteins containing five transmembrane regions. These proteins are found exclusively in Schizosaccharomyces pombe (Fission yeast).
Probab=60.23 E-value=3.1 Score=39.81 Aligned_cols=139 Identities=17% Similarity=0.163 Sum_probs=79.9
Q ss_pred eeeeeCCCCcEEEEEEeeCCCCC--ceEEEEE-E--EEECC-----CCCCCCCCcCchhHHHHHHHHHHHHHHHHHHHHH
Q 010204 166 VDVPITKTGMYNLFFIACDPKLK--GLVMSGK-T--IWKNP-----NGYLPGRMAPLMNFYVYMSLAYVVLSVIWFIQYV 235 (515)
Q Consensus 166 ~~y~I~ktG~Y~v~~~~C~~~~~--~~~~~g~-v--~f~N~-----~GyLpA~e~pll~fY~~msi~Y~vl~i~W~~~~~ 235 (515)
...-|++||-||+..-.-.-+.. +++.-|- + .-.|. ..|.+..|++-.- +++.+|.+-|.
T Consensus 36 ~~i~I~~T~sYCvAar~mtmdgaefnldlmgysvsedqinndeigiwnyisvaemggvl----------lflsywiwtcl 105 (256)
T PF09437_consen 36 KTILINETGSYCVAARPMTMDGAEFNLDLMGYSVSEDQINNDEIGIWNYISVAEMGGVL----------LFLSYWIWTCL 105 (256)
T ss_pred EEEEecCccceEEEEeeeecccceecccccccccchhhcCccceeeeeEEEhhhcCcee----------ehhHHHHHHHH
Confidence 34678999999998754321111 2222221 1 11122 2477766665332 23457999999
Q ss_pred HhccchhHHHHHHHHHHHHHH-HHHHHH-HHHhhhhcccCCCcchhhhH--HhHHHHHHHHHHHHHHHHHHhcccccccc
Q 010204 236 RYWKDILQLQHCITAVITLGL-FEMILW-FSEYANFNNTGIRPVVITTW--VVTVGAVRKSLTRLLILCVSMGYGVVRPT 311 (515)
Q Consensus 236 k~r~~ll~Iq~~I~avi~l~~-le~~~~-~~~Y~~~N~~G~~~~~~~v~--~~i~~a~k~tlsf~LlLlVslGYGvVkp~ 311 (515)
.+.+-++|-|+.+..-|++.. ...+-. .-+|..-.. .-.--.++ ..+...+|.-+-|+.++--++|.|++|..
T Consensus 106 hfskiifpaqkviClYIflfalnqtlqecieeyvFsse---cikyrqFysvyeiidFlRTnfyrlfviycalgfgitRTv 182 (256)
T PF09437_consen 106 HFSKIIFPAQKVICLYIFLFALNQTLQECIEEYVFSSE---CIKYRQFYSVYEIIDFLRTNFYRLFVIYCALGFGITRTV 182 (256)
T ss_pred hHhheecccceEEEEEeehhhcChhHHHHHHHheeeeE---EEEecccccHHHHHHHHHhhhhhhheeeecccccceeee
Confidence 999999999997755443332 222221 122211000 00011222 35788999999999999999999998854
Q ss_pred cCCccc
Q 010204 312 LGGLTS 317 (515)
Q Consensus 312 L~~~~~ 317 (515)
-.-.|.
T Consensus 183 pKylmI 188 (256)
T PF09437_consen 183 PKYLMI 188 (256)
T ss_pred cceEEE
Confidence 433444
No 10
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=57.98 E-value=3.3 Score=42.58 Aligned_cols=18 Identities=22% Similarity=0.545 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 010204 431 ITAFWDVLAFALLCVICY 448 (515)
Q Consensus 431 i~~~w~~L~f~~l~~i~~ 448 (515)
..-+|.+|+.++++.+-+
T Consensus 168 ~dL~WL~LFlaiLIWlY~ 185 (381)
T PF05297_consen 168 VDLYWLLLFLAILIWLYV 185 (381)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 446888877777665444
No 11
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=55.01 E-value=38 Score=37.13 Aligned_cols=79 Identities=13% Similarity=0.108 Sum_probs=44.0
Q ss_pred CeeeeeCCCCcEEEEEEeeCCCC------------CceEEEEEEEEECC-CCCCCCCCcCchhHHHHHHHHHHHHHHHHH
Q 010204 165 NVDVPITKTGMYNLFFIACDPKL------------KGLVMSGKTIWKNP-NGYLPGRMAPLMNFYVYMSLAYVVLSVIWF 231 (515)
Q Consensus 165 ~~~y~I~ktG~Y~v~~~~C~~~~------------~~~~~~g~v~f~N~-~GyLpA~e~pll~fY~~msi~Y~vl~i~W~ 231 (515)
|.+.+|+++|.---+-.+--+.. .......-|++.+| +.|.-.... .=|++|.|+-.+++ +++
T Consensus 239 P~~r~i~~~GF~A~W~v~~l~r~~~q~~~~~~~~~~~~~~~~gV~l~~Pvd~Y~~~~Ra---~KYgiLFI~LTF~~-ffl 314 (430)
T PF06123_consen 239 PEEREITDSGFSAQWKVSHLARNYPQQWASDDNCPDLSASAFGVDLIEPVDHYQKSERA---VKYGILFIGLTFLA-FFL 314 (430)
T ss_pred CCCCccCCCCceeEeeehhhccchhhHhhhcccCcccccCceeEEEeccccHHHHHHHH---HHHHHHHHHHHHHH-HHH
Confidence 56788899888766543321110 01123456777777 445444333 23666666544433 333
Q ss_pred HHHHHhccchhHHHHHH
Q 010204 232 IQYVRYWKDILQLQHCI 248 (515)
Q Consensus 232 ~~~~k~r~~ll~Iq~~I 248 (515)
+-..+ ++.+.|+||.+
T Consensus 315 fE~~~-~~~iHpiQY~L 330 (430)
T PF06123_consen 315 FELLS-KLRIHPIQYLL 330 (430)
T ss_pred HHHHh-cCcccHHHHHH
Confidence 33344 45599999988
No 12
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=50.39 E-value=25 Score=35.27 Aligned_cols=20 Identities=25% Similarity=0.109 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010204 389 DIYRKFSNALAVTVIASVIW 408 (515)
Q Consensus 389 ~lYr~f~~~lv~~V~~s~i~ 408 (515)
++.|-+..++++.++=.++.
T Consensus 7 ~~~~~~~~illg~~iGg~~G 26 (248)
T PF11368_consen 7 RILRFLLLILLGGLIGGFIG 26 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56666667777665555443
No 13
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.65 E-value=1.3e+02 Score=31.16 Aligned_cols=46 Identities=24% Similarity=0.383 Sum_probs=27.4
Q ss_pred HHhhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHH
Q 010204 352 FLVLPVAFLDA-----FLILWIFTSLSKTLEQLQAKRS----SIKLDIYRKFSNA 397 (515)
Q Consensus 352 ~~~lpla~~~~-----~f~~WI~~sL~~Ti~~L~~~rq----~~KL~lYr~f~~~ 397 (515)
.+++|+.++.- ....|.+.+..-..-.+|+-|+ ..-.-.|+.|..+
T Consensus 89 m~~iPlyf~~~~~w~rfl~~WlmF~~~tafi~~ka~rkp~~g~tpRlVYkwFl~l 143 (328)
T KOG1734|consen 89 MLFIPLYFFLYMQWYRFLFCWLMFCGFTAFITLKALRKPISGDTPRLVYKWFLFL 143 (328)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHH
Confidence 35567766543 2366777776666666666553 3445567766654
No 14
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=41.50 E-value=4.9e+02 Score=28.15 Aligned_cols=78 Identities=26% Similarity=0.339 Sum_probs=42.9
Q ss_pred eeeCCCCcEEEEEEeeCCCCCceEEEEEEEEECCCCCCCCC---CcCchhHHHH-HHHHHHHHHHH----HHHHHHHhc-
Q 010204 168 VPITKTGMYNLFFIACDPKLKGLVMSGKTIWKNPNGYLPGR---MAPLMNFYVY-MSLAYVVLSVI----WFIQYVRYW- 238 (515)
Q Consensus 168 y~I~ktG~Y~v~~~~C~~~~~~~~~~g~v~f~N~~GyLpA~---e~pll~fY~~-msi~Y~vl~i~----W~~~~~k~r- 238 (515)
=.++..|+=|.+..--|-+ ..+. +.+|.-|++... |-|-+-+|.. +.+++.+..++ |...+.+++
T Consensus 35 A~fp~~GfPC~y~~vVDY~--~~N~----t~~n~~~~ltP~LFLe~~~~~~yv~~t~~v~l~~~iYyi~~av~i~~~~~~ 108 (374)
T PF01528_consen 35 ASFPGLGFPCFYAAVVDYS--ALNL----TARNVMGHLTPTLFLEAPEMVFYVYFTFIVFLAVAIYYIVGAVIIYRRKKG 108 (374)
T ss_pred HhCCCCCCCeeccccccch--hcCC----chhhccCCCCCceeccCCeeeeehHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566778878775443321 1122 267777777664 5566666664 44445544444 444444444
Q ss_pred --cchhHHHHHHHHH
Q 010204 239 --KDILQLQHCITAV 251 (515)
Q Consensus 239 --~~ll~Iq~~I~av 251 (515)
...-..+.+|+.+
T Consensus 109 ~~~~~~~~~~~i~~v 123 (374)
T PF01528_consen 109 HAYGLNQLSRWISLV 123 (374)
T ss_pred cchhhhHHHHHHHHh
Confidence 2467778866554
No 15
>PF13491 DUF4117: Domain of unknown function (DUF4117)
Probab=41.10 E-value=2.8e+02 Score=25.52 Aligned_cols=67 Identities=16% Similarity=0.173 Sum_probs=43.7
Q ss_pred EEEECCCCCCCCCCc-CchhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Q 010204 196 TIWKNPNGYLPGRMA-PLMNFYVYMSLAYVVLSVIWFIQYVRYWKDILQLQHCITAVITLGLFEMILW 262 (515)
Q Consensus 196 v~f~N~~GyLpA~e~-pll~fY~~msi~Y~vl~i~W~~~~~k~r~~ll~Iq~~I~avi~l~~le~~~~ 262 (515)
.+.+|.-|-+-|--. -.....|..+.+..++.+.|...++++|+.-.+..+++..++.+..+..++.
T Consensus 41 ~~~~N~~G~~Ga~~a~~l~~~fG~~a~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 108 (171)
T PF13491_consen 41 AEVHNLMGILGAYLADFLFQLFGLGAYLLPLLLIVWGIRLFRRRSLRRRIRRWLGLLLLLLSLSGLLS 108 (171)
T ss_pred CCCcCCCChHhHHHHHhHHhccchHHHHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHHHHHHH
Confidence 345666664443311 1335778888888888999999999988755566666666665555555554
No 16
>PF14089 KbaA: KinB-signalling pathway activation in sporulation
Probab=40.51 E-value=3.5e+02 Score=26.25 Aligned_cols=61 Identities=15% Similarity=0.281 Sum_probs=29.5
Q ss_pred HHHHHHHhcccccccccCCccceEeehhHHHH-HHHHHHHHHhhhccccCCccchhhHHhhHHHHHHH
Q 010204 296 LLILCVSMGYGVVRPTLGGLTSKVLLLGATYF-LASELLDITEFVGTISDISGRARLFLVLPVAFLDA 362 (515)
Q Consensus 296 ~LlLlVslGYGvVkp~L~~~~~kv~~L~v~yf-vas~~~~i~~~~g~~~d~s~~~~L~~~lpla~~~~ 362 (515)
.++|++++--..+|.+.+.+ -..+..++| +..-++|-.-.+. .+|.+ +..+.++|+..|++
T Consensus 109 ~~ll~~~lvvA~~K~K~Tnk---~AfIPaLFfMvVvT~lEw~PaL~-~n~~~--~l~~ml~pLl~CNA 170 (180)
T PF14089_consen 109 LFLLIVALVVAYIKAKQTNK---SAFIPALFFMVVVTTLEWVPALR-VNDEN--WLYLMLFPLLACNA 170 (180)
T ss_pred HHHHHHHHHHHHHHHHHhcc---cchhHHHHHHHHHHHHHHHHHHh-cCCcc--cHHHHHHHHHHHHH
Confidence 34555666556666666633 233333333 2222222221211 13322 56677889887776
No 17
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=40.33 E-value=2.9e+02 Score=28.40 Aligned_cols=77 Identities=17% Similarity=0.238 Sum_probs=50.2
Q ss_pred hhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccchhhHHH
Q 010204 349 ARLFLVLPVAFLDAFLILWIFTSLSKTLEQLQAKRSSIKLDIYRKFSNALAVTVIASVIWIAYEVYFKATDPFNERWQSA 428 (515)
Q Consensus 349 ~~L~~~lpla~~~~~f~~WI~~sL~~Ti~~L~~~rq~~KL~lYr~f~~~lv~~V~~s~i~i~~~i~~~~~~~~~~~Wk~~ 428 (515)
+.+.+++|-. .|..--+..+.+..++|+..|.. .++.+|.++.+..+++++|-+.++...+.+.-..-+|..
T Consensus 12 ~d~~l~vPn~----lFllfL~~~~~~s~~KL~~~~Sp----I~~tyY~llw~v~llnl~rc~vsm~~~~~~~~~~~d~~l 83 (261)
T PF10160_consen 12 WDVVLLVPNL----LFLLFLAWRLRKSRRKLRHTRSP----IFITYYALLWVVALLNLARCFVSMWVCSPGKGGIADKVL 83 (261)
T ss_pred hHHHHHHHHH----HHHHHHHHhchHHHHHHhcCCCc----cHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHH
Confidence 3455566643 23333345677788888766665 788899999888999999877765554443323456777
Q ss_pred HHHHH
Q 010204 429 WIITA 433 (515)
Q Consensus 429 W~i~~ 433 (515)
|.+.-
T Consensus 84 W~ilr 88 (261)
T PF10160_consen 84 WNILR 88 (261)
T ss_pred HHHHH
Confidence 76653
No 18
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=34.99 E-value=5.7e+02 Score=27.02 Aligned_cols=30 Identities=17% Similarity=0.451 Sum_probs=18.9
Q ss_pred CcCchhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010204 209 MAPLMNFYVYMSLAYVVLSVIWFIQYVRYWK 239 (515)
Q Consensus 209 e~pll~fY~~msi~Y~vl~i~W~~~~~k~r~ 239 (515)
++|..|. ..++++|.+..+.|+....-.|+
T Consensus 41 ~yPerpi-~fl~~Cy~~~s~~~l~~~~~g~~ 70 (328)
T PF01534_consen 41 RYPERPI-IFLSFCYFIVSLGYLIRFILGRE 70 (328)
T ss_pred CCccchh-hHHHHHHHHHHHHHHHHHhccCC
Confidence 3444443 35677888888888777765443
No 19
>PLN03148 Blue copper-like protein; Provisional
Probab=33.72 E-value=1.4e+02 Score=28.51 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=15.1
Q ss_pred CCceeeeeChhhhccCCCCCCCEE
Q 010204 113 GGQRSICCTPDLAKLEGCKQGEVI 136 (515)
Q Consensus 113 ~g~~~~~C~~~~~~~g~C~~g~~I 136 (515)
.|.++++|.+ |.|+.|+-+
T Consensus 95 ~G~~YFIcg~-----ghC~~GmKl 113 (167)
T PLN03148 95 AKRYYFICGN-----GQCFNGMKV 113 (167)
T ss_pred CccEEEEcCC-----CccccCCEE
Confidence 3788999982 799999654
No 20
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=31.82 E-value=1.6e+02 Score=30.95 Aligned_cols=55 Identities=15% Similarity=0.303 Sum_probs=26.2
Q ss_pred HHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010204 352 FLVLPVAFLDAFLI---LWIFTSLSKTLEQLQAKRSSIKLDIYRKFSNALAVTVIASVIW 408 (515)
Q Consensus 352 ~~~lpla~~~~~f~---~WI~~sL~~Ti~~L~~~rq~~KL~lYr~f~~~lv~~V~~s~i~ 408 (515)
+-.+|.++-|...+ +|++..+.+.++++..++...+ +-+-+..+.++++++.+.|
T Consensus 18 ~g~~PFSvgdi~~~~~il~ll~~~~~~~~~~~k~~~~~~--l~~~~~~~~~~y~~F~~~W 75 (318)
T PF12725_consen 18 FGWFPFSVGDILYYLLILFLLYYLIRLIRKIFKKKKRFK--LLNILFFLSVLYFLFYLLW 75 (318)
T ss_pred ccCcChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHHHHHh
Confidence 33456666555444 4444445555544433222222 3333444555566666665
No 21
>PF08733 PalH: PalH/RIM21; InterPro: IPR014844 PalH (also known as RIM21) is a transmembrane protein required for proteolytic cleavage of Rim101/PacC transcription factors which are activated by C-terminal proteolytic processing. Rim101/PacC family proteins play a key role in pH-dependent responses and PalH has been implicated as a pH sensor [].
Probab=30.76 E-value=6.8e+02 Score=26.62 Aligned_cols=57 Identities=18% Similarity=0.461 Sum_probs=26.8
Q ss_pred hHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhcCccchhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010204 387 KLDI-YRKFSNALAVTVIASVIWIAYEVYFKATDPFNERWQSAWIITAFWDVLAFALLCVICYLW 450 (515)
Q Consensus 387 KL~l-Yr~f~~~lv~~V~~s~i~i~~~i~~~~~~~~~~~Wk~~W~i~~~w~~L~f~~l~~i~~lW 450 (515)
|+.. +|+..-+.+..+++...-+++ .-.| ....|.++|-..--| +.++...++.|=|
T Consensus 257 k~~~~~~~~~~L~il~~~~i~l~~vf----fI~d-is~~~v~~w~~~~~~--~~~~~~tVivWEW 314 (348)
T PF08733_consen 257 KYCFDYKQMIPLAILNLLLILLPVVF----FILD-ISNWWVSGWSEYFRW--VLYVAATVIVWEW 314 (348)
T ss_pred hhheecchHHHHHHHHHHHHHHHHHh----heeE-ccchhhhhHHHHHHH--HHHHHHhhhHHHh
Confidence 5555 677665555444443332221 1222 236788888543222 2233334455544
No 22
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.44 E-value=7.5e+02 Score=28.36 Aligned_cols=89 Identities=21% Similarity=0.333 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH--H--------------HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 010204 355 LPVAFLDAFLILWIFTSLSKTLEQ--L--------------QAKRSSIKLDIYRKFSNALAVTVIASVIWIAYEVYFKAT 418 (515)
Q Consensus 355 lpla~~~~~f~~WI~~sL~~Ti~~--L--------------~~~rq~~KL~lYr~f~~~lv~~V~~s~i~i~~~i~~~~~ 418 (515)
+|.....+...+|...|+--|.-- . |--||.-+-+.|-+-+-.++.+=++-++.+..|++|-
T Consensus 430 vPF~T~~~ll~LwF~isVPLsf~G~y~g~kk~~~e~PvrTNqIpRqIP~q~~y~~~~~~ili~GilPFg~ifIELfFI-- 507 (628)
T KOG1278|consen 430 VPFSTMVALLFLWFGISVPLSFVGGYFGFKKPAIEHPVRTNQIPRQIPEQPWYLNPIPSILIAGILPFGAIFIELFFI-- 507 (628)
T ss_pred ccHHHHHHHHHHHHHhhhhHHHhhHHhhccCCCCCCCcccCCCcccCCCCccccchhhHHHhhcccchHHHHHHHHHH--
Confidence 455555555667776665544421 1 2256776666776655544444455555555564332
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 010204 419 DPFNERWQSAWIITAFWDVLAFALLCVIC 447 (515)
Q Consensus 419 ~~~~~~Wk~~W~i~~~w~~L~f~~l~~i~ 447 (515)
.+.-|..+..---+-..++|+++++.|
T Consensus 508 --~~SiW~~qfYY~FGFLFlvfiiLvvtc 534 (628)
T KOG1278|consen 508 --LSSIWLNQFYYMFGFLFLVFIILVVTC 534 (628)
T ss_pred --HHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 123577776555444566676666554
No 23
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=29.58 E-value=4.1e+02 Score=23.77 Aligned_cols=53 Identities=8% Similarity=0.050 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhhHHhHHHHHHHHH
Q 010204 241 ILQLQHCITAVITLGLFEMILWFSEYANFNNTGIRPVVITTWVVTVGAVRKSL 293 (515)
Q Consensus 241 ll~Iq~~I~avi~l~~le~~~~~~~Y~~~N~~G~~~~~~~v~~~i~~a~k~tl 293 (515)
.++-.--+..++++..++..++..++-..|.+|.-......+..++-++--.+
T Consensus 50 ~l~~~~~~~~I~~lAvvQi~VqL~yFLHm~~k~~~~~~~~if~gi~va~~tv~ 102 (110)
T TIGR02908 50 EIDKWFVIPFILLLAAVQVAFQLYYFMHMKDKGHEVPAQFIYGGVFVTMLVVL 102 (110)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHheeeCCCccchHHHHHHHHHHHHHHHHH
Confidence 45556667778888899999998888888877664323334444444433333
No 24
>COG3771 Predicted membrane protein [Function unknown]
Probab=29.32 E-value=3.1e+02 Score=23.69 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 010204 359 FLDAFLILWIFTSLSKTLEQLQAKRSSIKLD 389 (515)
Q Consensus 359 ~~~~~f~~WI~~sL~~Ti~~L~~~rq~~KL~ 389 (515)
+.....+.|++.++..---+|+.+|-..|++
T Consensus 49 F~~G~~lgwli~g~fy~k~~l~~~~l~rqiK 79 (97)
T COG3771 49 FAAGFALGWLICGLFYLKVRLSLMRLERQIK 79 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344558898888776655565555444443
No 25
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=26.96 E-value=6.7e+02 Score=25.31 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010204 370 TSLSKTLEQLQAKRSSIKLDIYRKFSNALAVTVIASVIW 408 (515)
Q Consensus 370 ~sL~~Ti~~L~~~rq~~KL~lYr~f~~~lv~~V~~s~i~ 408 (515)
.+..+-+++..++-|.++-.||+-|..++++.++|.++.
T Consensus 130 ~~ml~evK~~~E~y~k~~k~~~~gi~aml~Vf~LF~lvm 168 (230)
T PF03904_consen 130 KSMLQEVKQSHEKYQKRQKSMYKGIGAMLFVFMLFALVM 168 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344444555566667788899999998888877777664
No 26
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=26.70 E-value=7.2e+02 Score=30.76 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 010204 427 SAWIITAFWDVLAFALLCVICYLWAPSQNSQR 458 (515)
Q Consensus 427 ~~W~i~~~w~~L~f~~l~~i~~lWRPt~nn~~ 458 (515)
.+|+-..+|-....++++++..++||......
T Consensus 201 ~~~~~~~~~~~~~~~l~~a~~~l~r~~~~~~~ 232 (1094)
T PRK02983 201 PVWVNALLGLFGAAALIAALIVLFRSQRADNA 232 (1094)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcC
Confidence 46766777766556666677788999776544
No 27
>PRK10263 DNA translocase FtsK; Provisional
Probab=26.32 E-value=4.2e+02 Score=33.36 Aligned_cols=42 Identities=19% Similarity=0.030 Sum_probs=22.5
Q ss_pred EECCCCCCCCCCcC-chhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010204 198 WKNPNGYLPGRMAP-LMNFYVYMSLAYVVLSVIWFIQYVRYWK 239 (515)
Q Consensus 198 f~N~~GyLpA~e~p-ll~fY~~msi~Y~vl~i~W~~~~~k~r~ 239 (515)
.+|.-|-+.|--.- ++-++|+++.+..+++++|++.++++++
T Consensus 60 V~Nl~GiVGA~LAD~L~~LFGl~AYLLP~LL~~~a~~l~R~r~ 102 (1355)
T PRK10263 60 IHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQS 102 (1355)
T ss_pred cccccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccc
Confidence 46777766554333 3445666665555555555555555543
No 28
>CHL00043 cemA envelope membrane protein
Probab=24.67 E-value=81 Score=32.34 Aligned_cols=39 Identities=28% Similarity=0.464 Sum_probs=25.7
Q ss_pred HHhhhccccCCccchhhHHhhHHHHHHHHHHHHHHHHHHH
Q 010204 335 ITEFVGTISDISGRARLFLVLPVAFLDAFLILWIFTSLSK 374 (515)
Q Consensus 335 i~~~~g~~~d~s~~~~L~~~lpla~~~~~f~~WI~~sL~~ 374 (515)
+.++.|-.++-.-...+...+|+ ++|++|=+|||+.|++
T Consensus 209 i~~hfGl~~n~~~I~lfVatfPV-iLDtiFKYWIFRyLNR 247 (261)
T CHL00043 209 IYKHFGFAHNDQIISLLVSTFPV-ILDTIFKYWIFRYLNR 247 (261)
T ss_pred HHHhcCCCcccchHHHHHHhhhH-HHHHHHHHHHHhhccC
Confidence 44666654432222234566788 5799999999998875
No 29
>PF12292 DUF3624: Protein of unknown function (DUF3624); InterPro: IPR022072 This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length. There is a conserved GRC sequence motif.
Probab=24.31 E-value=3.6e+02 Score=22.65 Aligned_cols=47 Identities=17% Similarity=0.435 Sum_probs=34.0
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcchhhhHHhHHHHH
Q 010204 237 YWKDILQLQHCITAVITLGLFEMILWFSEYANFNNTGIRPVVITTWVVTVGAV 289 (515)
Q Consensus 237 ~r~~ll~Iq~~I~avi~l~~le~~~~~~~Y~~~N~~G~~~~~~~v~~~i~~a~ 289 (515)
.|+.+=+-|.+|--+-++..+.-..||+-|. ..|..+.-++.++.+.
T Consensus 11 F~~KiGRC~rCM~QLtvLs~~~w~iWw~~f~------d~P~sieSIALl~~~~ 57 (77)
T PF12292_consen 11 FWQKIGRCQRCMWQLTVLSVLSWPIWWFFFR------DTPTSIESIALLFFCF 57 (77)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHc------CCcchHHHHHHHHHHH
Confidence 4667889999999888888888888877666 2355666666665443
No 30
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=23.67 E-value=2.9e+02 Score=32.30 Aligned_cols=45 Identities=20% Similarity=0.315 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010204 364 LILWIFTSLSKTLEQLQAKRSSIKLDIYRKFSNALAVTVIASVIW 408 (515)
Q Consensus 364 f~~WI~~sL~~Ti~~L~~~rq~~KL~lYr~f~~~lv~~V~~s~i~ 408 (515)
..+|++.--....-.+++-|.+--+.+.|-|.-=-|+|-+++++|
T Consensus 124 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ah~igypvv~~g~ 168 (697)
T PF09726_consen 124 VSLWILFVYVEASVRLKDLKSMPHLDLCRPFAAHCIGYPVVTLGF 168 (697)
T ss_pred HHHHHHHHHHHHHHhhcccCCCcchhhcccHHHhhcCCceeEeec
Confidence 345555544444445555555444899999998888888888774
No 31
>PRK12768 CysZ-like protein; Reviewed
Probab=23.07 E-value=4.4e+02 Score=26.58 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=23.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 010204 423 ERWQSAWIITAFWDVLAFALLCVICYLWAPSQN 455 (515)
Q Consensus 423 ~~Wk~~W~i~~~w~~L~f~~l~~i~~lWRPt~n 455 (515)
.+| -.|+....|.+....+++...|++.|-.+
T Consensus 59 p~w-l~wL~~ll~~l~~l~~l~~~~flf~~va~ 90 (240)
T PRK12768 59 PDW-AGWLGWVLSIAAGLGLALGLALLIAPVTA 90 (240)
T ss_pred ccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345 55877788887777777778888888775
No 32
>PF03040 CemA: CemA family; InterPro: IPR004282 Members of this family are probable integral membrane proteins. Their molecular function is unknown. CemA proteins are found in the inner envelope membrane of chloroplasts but not in the thylakoid membrane []. A cyanobacterial member of this family (proton extrusion protein PcxA) is involved in light-induced Na(+)-dependent proton extrusion and has been implicated in CO2 transport, but is probably not a CO2 transporter itself [].; GO: 0016021 integral to membrane
Probab=22.20 E-value=74 Score=31.97 Aligned_cols=39 Identities=28% Similarity=0.479 Sum_probs=26.3
Q ss_pred HHhhhccccCCccchhhHHhhHHHHHHHHHHHHHHHHHHH
Q 010204 335 ITEFVGTISDISGRARLFLVLPVAFLDAFLILWIFTSLSK 374 (515)
Q Consensus 335 i~~~~g~~~d~s~~~~L~~~lpla~~~~~f~~WI~~sL~~ 374 (515)
+.++.|-.++-.-...+...+|+ ++|++|=+|||+.|++
T Consensus 178 ~~~hfG~~~n~~~i~~fvatfPV-iLDt~fKyWIFryLnr 216 (230)
T PF03040_consen 178 ILEHFGLPENEQFISLFVATFPV-ILDTIFKYWIFRYLNR 216 (230)
T ss_pred HHHhcCCCcccchhhhhhhhhhH-HHHHHHHHhhhcccCC
Confidence 44666654433333345567798 5699999999998775
No 33
>PF09971 DUF2206: Predicted membrane protein (DUF2206); InterPro: IPR018701 This family of predicted membrane proteins from archaea has no known function.
Probab=21.70 E-value=1e+03 Score=25.56 Aligned_cols=49 Identities=20% Similarity=0.116 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHH
Q 010204 361 DAFLILWIFTSLSKTLEQLQAKRSS-IKLDIYRKFSNALAVTVIASVIWI 409 (515)
Q Consensus 361 ~~~f~~WI~~sL~~Ti~~L~~~rq~-~KL~lYr~f~~~lv~~V~~s~i~i 409 (515)
++-|+++=...+.+.+.+++.++-. ..-..+|-+...+++..+++.+++
T Consensus 187 LAPf~iiG~~~~~~~i~k~~~~~~~~~~~~~~ki~~ifl~v~lLfnsG~i 236 (367)
T PF09971_consen 187 LAPFFIIGGITLFKLINKLFRRIWKPINKNSFKILSIFLAVFLLFNSGFI 236 (367)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHHHhhhHH
Confidence 4444444444555566666554441 111222444555556666665543
No 34
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=21.21 E-value=1.6e+02 Score=25.17 Aligned_cols=36 Identities=19% Similarity=0.453 Sum_probs=31.2
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHhccchhHHH
Q 010204 210 APLMNFYVYMSLAYVVLSVIWFIQYVRYWKDILQLQ 245 (515)
Q Consensus 210 ~pll~fY~~msi~Y~vl~i~W~~~~~k~r~~ll~Iq 245 (515)
-|.++-|..+++...++|++|+..++-.-.++.|++
T Consensus 27 ~~sp~W~~p~m~~lmllGL~WiVvyYi~~~~i~pi~ 62 (87)
T PF06781_consen 27 KPSPRWYAPLMLGLMLLGLLWIVVYYISGGQIPPIP 62 (87)
T ss_pred CCCCccHHHHHHHHHHHHHHHHhhhhcccCCCCCcc
Confidence 578899999999999999999999988777766665
No 35
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=20.79 E-value=1.3e+02 Score=25.26 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 010204 354 VLPVAFLDAFLILWIFTSLSKTLEQ 378 (515)
Q Consensus 354 ~lpla~~~~~f~~WI~~sL~~Ti~~ 378 (515)
++|++++.+++|++++.+-.+--++
T Consensus 6 l~~~vv~~~i~yf~~~rpqkK~~k~ 30 (84)
T TIGR00739 6 LLPLVLIFLIFYFLIIRPQRKRRKA 30 (84)
T ss_pred HHHHHHHHHHHHHheechHHHHHHH
Confidence 4577777888888887766554433
No 36
>PRK02507 proton extrusion protein PcxA; Provisional
Probab=20.30 E-value=1.1e+02 Score=33.62 Aligned_cols=39 Identities=26% Similarity=0.456 Sum_probs=25.5
Q ss_pred HHhhhccccCCccchhhHHhhHHHHHHHHHHHHHHHHHHH
Q 010204 335 ITEFVGTISDISGRARLFLVLPVAFLDAFLILWIFTSLSK 374 (515)
Q Consensus 335 i~~~~g~~~d~s~~~~L~~~lpla~~~~~f~~WI~~sL~~ 374 (515)
+.+++|-.++-.-...+...+|+ ++|++|=+|||+.|++
T Consensus 370 i~~HfGl~~n~~~I~lFVaTfPV-iLDTiFKYWIFRyLNR 408 (422)
T PRK02507 370 IARHFGLPENRNFIFLFIATFPV-ILDTIFKYWIFRYLNR 408 (422)
T ss_pred HHHhcCCCcccchHHHHHhhhhH-HHHHHHHHHHHhhccC
Confidence 45666654332222234566788 5799999999998875
Done!