Query 010204
Match_columns 515
No_of_seqs 208 out of 406
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 22:09:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010204.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010204hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eiy_A Adenosine receptor A2A/ 32.1 3.7E+02 0.013 26.2 17.9 27 353-380 211-237 (447)
2 3eml_A Human adenosine A2A rec 27.6 4.5E+02 0.015 25.9 21.7 23 352-375 200-222 (488)
3 3rko_A NADH-quinone oxidoreduc 24.8 3.5E+02 0.012 24.0 9.0 60 242-313 64-124 (147)
4 3odu_A C-X-C chemokine recepto 19.8 6.5E+02 0.022 24.9 15.5 21 353-374 218-238 (502)
5 2rdd_B UPF0092 membrane protei 17.1 1.4E+02 0.0046 20.2 3.5 24 354-377 6-29 (37)
6 1yew_C Particulate methane mon 16.0 3.5E+02 0.012 26.6 7.3 41 416-456 76-118 (289)
7 1nkz_B Light-harvesting protei 14.9 1.8E+02 0.006 20.5 3.6 8 445-452 31-38 (41)
8 3vw7_A Proteinase-activated re 14.6 8.4E+02 0.029 23.9 17.1 22 353-375 197-218 (484)
9 2z73_A Rhodopsin; visual pigme 13.3 9.1E+02 0.031 23.6 18.4 27 353-380 209-235 (448)
10 1lgh_B LH II, B800/850, light 13.0 2.1E+02 0.0071 20.6 3.6 8 445-452 36-43 (45)
No 1
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=32.05 E-value=3.7e+02 Score=26.23 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=19.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010204 353 LVLPVAFLDAFLILWIFTSLSKTLEQLQ 380 (515)
Q Consensus 353 ~~lpla~~~~~f~~WI~~sL~~Ti~~L~ 380 (515)
.++|+++ ..++|..|+..+.+..++.+
T Consensus 211 ~~lP~~i-i~~~y~~I~~~l~~~~~~~~ 237 (447)
T 4eiy_A 211 VLVPLLL-MLGVYLRIFLAARRQLADLE 237 (447)
T ss_dssp CHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHhhhhh
Confidence 4567754 56778888888887766544
No 2
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=27.58 E-value=4.5e+02 Score=25.86 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=14.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHH
Q 010204 352 FLVLPVAFLDAFLILWIFTSLSKT 375 (515)
Q Consensus 352 ~~~lpla~~~~~f~~WI~~sL~~T 375 (515)
..++|++ +..++|..|+..+.+.
T Consensus 200 ~~~~P~~-ii~~~y~~I~~~l~~~ 222 (488)
T 3eml_A 200 CVLVPLL-LMLGVYLRIFLAARRQ 222 (488)
T ss_dssp HTHHHHH-HHHHHHHHHHHHHTCC
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3456764 4566678888777543
No 3
>3rko_A NADH-quinone oxidoreductase subunit A; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=24.83 E-value=3.5e+02 Score=23.95 Aligned_cols=60 Identities=13% Similarity=0.138 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHhhhhcccCCCcchhhhHHhHHHHHHHHHHHHHHHHHHhcccccccccC
Q 010204 242 LQLQHCITAVITLGL-FEMILWFSEYANFNNTGIRPVVITTWVVTVGAVRKSLTRLLILCVSMGYGVVRPTLG 313 (515)
Q Consensus 242 l~Iq~~I~avi~l~~-le~~~~~~~Y~~~N~~G~~~~~~~v~~~i~~a~k~tlsf~LlLlVslGYGvVkp~L~ 313 (515)
+.+|+|+.+++++.. +|.++-+---...+.. ++ ...-..+.|+++|++|+=|---+-.|.
T Consensus 64 FsirFfLiAilFlIFDvEi~~L~Pwa~~~~~~-----~~-------~~~~~~~~Fl~iL~~Gl~yEW~~GaL~ 124 (147)
T 3rko_A 64 LSAKFYLVAMFFVIFDVEALYLFAWSTSIRES-----GW-------VGFVEAAIFIFVLLAGLVYLVRIGALD 124 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTT-----HH-------HHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hH-------HHHHHHHHHHHHHHHHHHHHHHcCCeE
Confidence 779999988887776 8888743211111111 11 112235678888888887766666665
No 4
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=19.80 E-value=6.5e+02 Score=24.88 Aligned_cols=21 Identities=29% Similarity=0.237 Sum_probs=13.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHH
Q 010204 353 LVLPVAFLDAFLILWIFTSLSK 374 (515)
Q Consensus 353 ~~lpla~~~~~f~~WI~~sL~~ 374 (515)
.++|+++ ..++|..|+..+.+
T Consensus 218 ~~~p~~i-i~~~y~~I~~~l~~ 238 (502)
T 3odu_A 218 LILPGIV-ILSCYCIIISKLSH 238 (502)
T ss_dssp THHHHHH-HHHHHHHHHHHGGG
T ss_pred HHHHHHH-HHHHHHHHHHHHhh
Confidence 4567643 56667888777765
No 5
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=17.14 E-value=1.4e+02 Score=20.24 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 010204 354 VLPVAFLDAFLILWIFTSLSKTLE 377 (515)
Q Consensus 354 ~lpla~~~~~f~~WI~~sL~~Ti~ 377 (515)
++|+++..+++|+.++.+-.+--+
T Consensus 6 ~l~~v~~~~ifYFl~iRPQ~Kr~K 29 (37)
T 2rdd_B 6 ILMLVVFGLIFYFMILRPQQKRTK 29 (37)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHH
Confidence 456666777888888776554433
No 6
>1yew_C Particulate methane monooxygenase subunit C2; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_C
Probab=16.00 E-value=3.5e+02 Score=26.58 Aligned_cols=41 Identities=15% Similarity=0.452 Sum_probs=26.2
Q ss_pred hhcCccchhhHHHHHHHHHHHHHH--HHHHHHHhhhcccCCCC
Q 010204 416 KATDPFNERWQSAWIITAFWDVLA--FALLCVICYLWAPSQNS 456 (515)
Q Consensus 416 ~~~~~~~~~Wk~~W~i~~~w~~L~--f~~l~~i~~lWRPt~nn 456 (515)
+..|......+..|+..-..++.. ....+..+|+|+-.++|
T Consensus 76 ~GLDS~~PeF~~YWM~ll~~e~~le~~~~~~l~g~lWkTRdr~ 118 (289)
T 1yew_C 76 AGLDSFAPEFETYWMNFLYTEIVLEIVTASILWGYLWKTRDRN 118 (289)
T ss_dssp TSSCTTSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred hcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeecccc
Confidence 456777778888887655445432 23555678999954444
No 7
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=14.87 E-value=1.8e+02 Score=20.54 Aligned_cols=8 Identities=13% Similarity=0.459 Sum_probs=6.2
Q ss_pred HHhhhccc
Q 010204 445 VICYLWAP 452 (515)
Q Consensus 445 ~i~~lWRP 452 (515)
+.+|.|||
T Consensus 31 ~l~w~wrP 38 (41)
T 1nkz_B 31 FLAFSATP 38 (41)
T ss_dssp HHHHHHSS
T ss_pred HHHHHhCC
Confidence 45688998
No 8
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=14.61 E-value=8.4e+02 Score=23.87 Aligned_cols=22 Identities=18% Similarity=0.387 Sum_probs=14.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Q 010204 353 LVLPVAFLDAFLILWIFTSLSKT 375 (515)
Q Consensus 353 ~~lpla~~~~~f~~WI~~sL~~T 375 (515)
.++|++ +..++|..|+..+.+.
T Consensus 197 ~~~P~~-ii~~~Y~~I~~~l~~~ 218 (484)
T 3vw7_A 197 FFVPLI-ISTVCYVSIIRCLSSS 218 (484)
T ss_dssp HHHHHH-HHHHHHHHHHHHTTSC
T ss_pred HhHHHH-HHHHHHHHHHHHHhHh
Confidence 556764 3566677787776543
No 9
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=13.26 E-value=9.1e+02 Score=23.57 Aligned_cols=27 Identities=19% Similarity=0.248 Sum_probs=16.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010204 353 LVLPVAFLDAFLILWIFTSLSKTLEQLQ 380 (515)
Q Consensus 353 ~~lpla~~~~~f~~WI~~sL~~Ti~~L~ 380 (515)
.++|++ +.+++|..|+..+.+..++.+
T Consensus 209 ~~lP~~-ii~~~y~~I~~~l~~~~~~~~ 235 (448)
T 2z73_A 209 FFGPIL-IIFFCYFNIVMSVSNHEKEMA 235 (448)
T ss_dssp THHHHH-HHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 344554 355667777777776655543
No 10
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=13.04 E-value=2.1e+02 Score=20.59 Aligned_cols=8 Identities=38% Similarity=1.394 Sum_probs=6.2
Q ss_pred HHhhhccc
Q 010204 445 VICYLWAP 452 (515)
Q Consensus 445 ~i~~lWRP 452 (515)
+.+|.|||
T Consensus 36 ~L~~~wrP 43 (45)
T 1lgh_B 36 VLVWVWKP 43 (45)
T ss_dssp HHHHHHSC
T ss_pred HHHHHhcC
Confidence 45688998
Done!