Query 010204
Match_columns 515
No_of_seqs 208 out of 406
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 22:09:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010204.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010204hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1alya_ b.22.1.1 (A:) Extracel 21.4 59 0.0043 26.4 5.4 37 167-203 45-85 (146)
2 d1m56c_ f.25.1.1 (C:) Bacteria 18.0 3E+02 0.022 24.0 12.1 58 212-269 131-188 (265)
3 d1lghb_ f.3.1.1 (B:) Light-har 17.8 51 0.0037 21.8 3.2 8 445-452 34-41 (43)
4 d1v54c_ f.25.1.1 (C:) Mitochon 14.3 3.7E+02 0.027 23.4 11.5 58 213-271 127-184 (259)
5 d1kxga_ b.22.1.1 (A:) Soluble 14.2 1E+02 0.0076 24.8 5.2 37 165-203 41-77 (144)
6 d1jo5a_ f.3.1.1 (A:) Light-har 10.9 63 0.0046 21.9 2.1 8 445-452 39-46 (48)
7 d1a81a1 d.93.1.1 (A:9-137) Syk 9.6 1.3E+02 0.0093 23.8 4.1 43 128-178 24-68 (129)
8 d1i3za_ d.93.1.1 (A:) Ews/fli1 8.7 1.7E+02 0.013 21.7 4.4 42 130-179 23-66 (103)
9 d1xu1a_ b.22.1.1 (A:) A prolif 8.5 89 0.0065 25.0 2.6 20 165-184 39-58 (137)
10 d1dg6a_ b.22.1.1 (A:) Apoptosi 7.9 2.7E+02 0.019 22.4 5.6 17 166-182 53-69 (162)
No 1
>d1alya_ b.22.1.1 (A:) Extracellular domain of CD40 ligand {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.44 E-value=59 Score=26.38 Aligned_cols=37 Identities=11% Similarity=0.225 Sum_probs=25.1
Q ss_pred eeeeCCCCcEEEEEEeeC----CCCCceEEEEEEEEECCCC
Q 010204 167 DVPITKTGMYNLFFIACD----PKLKGLVMSGKTIWKNPNG 203 (515)
Q Consensus 167 ~y~I~ktG~Y~v~~~~C~----~~~~~~~~~g~v~f~N~~G 203 (515)
...|+++|+|+||..-+- +......+...+..+++.+
T Consensus 45 ~L~V~~~G~Y~VYsQv~f~~~~~~~~~~~~~~~v~~~~~~~ 85 (146)
T d1alya_ 45 QLTVKRQGLYYIYAQVTFCSNREASSQAPFIASLCLKSPGR 85 (146)
T ss_dssp EEEESSCEEEEEEEEEEEEECTTTSCSSEEEEEEEECCTTS
T ss_pred EEEeCCCeEEEEEEEEEEeccCCCCCceeEEEEEEEEcCCC
Confidence 488999999999975542 2223445777777777654
No 2
>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=18.04 E-value=3e+02 Score=24.03 Aligned_cols=58 Identities=12% Similarity=0.110 Sum_probs=36.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010204 212 LMNFYVYMSLAYVVLSVIWFIQYVRYWKDILQLQHCITAVITLGLFEMILWFSEYANF 269 (515)
Q Consensus 212 ll~fY~~msi~Y~vl~i~W~~~~~k~r~~ll~Iq~~I~avi~l~~le~~~~~~~Y~~~ 269 (515)
.+|+--...++-....+.|.....+++++-.....++...++++.+=..+.+.+|...
T Consensus 131 ~l~l~nT~iLl~Ss~~~~~a~~~~~~~~~~~~~~~~L~~t~~lg~~F~~~q~~Ey~~~ 188 (265)
T d1m56c_ 131 HLPLINTLILLCSGCAATWAHHALVHENNRRDVAWGLALAIALGALFTVFQAYEYSHA 188 (265)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHccHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3555555666666667778777665554445555556666666666556677777653
No 3
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=17.75 E-value=51 Score=21.84 Aligned_cols=8 Identities=38% Similarity=1.394 Sum_probs=6.2
Q ss_pred HHhhhccc
Q 010204 445 VICYLWAP 452 (515)
Q Consensus 445 ~i~~lWRP 452 (515)
+..|+|||
T Consensus 34 iLvw~wrP 41 (43)
T d1lghb_ 34 VLVWVWKP 41 (43)
T ss_dssp HHHHHHSC
T ss_pred HHHHHhcC
Confidence 45689999
No 4
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=14.33 E-value=3.7e+02 Score=23.39 Aligned_cols=58 Identities=19% Similarity=0.166 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 010204 213 MNFYVYMSLAYVVLSVIWFIQYVRYWKDILQLQHCITAVITLGLFEMILWFSEYANFNN 271 (515)
Q Consensus 213 l~fY~~msi~Y~vl~i~W~~~~~k~r~~ll~Iq~~I~avi~l~~le~~~~~~~Y~~~N~ 271 (515)
+|+...+.++-..+.+.|.....|.++ --+.-.++.+.++++.+-+.+.+.+|...+-
T Consensus 127 lpllnT~vLl~Ss~t~~~A~~~~~~~~-~~~~~~~l~~t~~lg~~Fl~~q~~Ey~~~~~ 184 (259)
T d1v54c_ 127 VPLLNTSVLLASGVSITWAHHSLMEGD-RKHMLQALFITITLGVYFTLLQASEYYEAPF 184 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCC-chhHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 555555666666666777777776443 3455566777788888878888888875543
No 5
>d1kxga_ b.22.1.1 (A:) Soluble part of TALL-1, sTALL-1 (BAFF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.22 E-value=1e+02 Score=24.80 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=23.6
Q ss_pred CeeeeeCCCCcEEEEEEeeCCCCCceEEEEEEEEECCCC
Q 010204 165 NVDVPITKTGMYNLFFIACDPKLKGLVMSGKTIWKNPNG 203 (515)
Q Consensus 165 ~~~y~I~ktG~Y~v~~~~C~~~~~~~~~~g~v~f~N~~G 203 (515)
+-+..|+++|+|.||...+... +. .-.+...+++...
T Consensus 41 ~g~L~V~~~GlYfVYsQV~F~~-~~-~~lsh~v~~~~~~ 77 (144)
T d1kxga_ 41 ENKILVKETGYFFIYGQVLYTD-KT-YAMGHLIQRKKVH 77 (144)
T ss_dssp TTEEEECSCEEEEEEEEEEECC-CS-SEEEEEEEEECSC
T ss_pred CCEEEEccceEEEEEEEEEEeC-CC-cccceEEEEEecc
Confidence 4568899999999998766533 12 2334556665433
No 6
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=10.93 E-value=63 Score=21.87 Aligned_cols=8 Identities=38% Similarity=1.364 Sum_probs=6.2
Q ss_pred HHhhhccc
Q 010204 445 VICYLWAP 452 (515)
Q Consensus 445 ~i~~lWRP 452 (515)
+.+|+|||
T Consensus 39 ~L~w~wrP 46 (48)
T d1jo5a_ 39 LAVYIWRP 46 (48)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhcC
Confidence 35688999
No 7
>d1a81a1 d.93.1.1 (A:9-137) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.58 E-value=1.3e+02 Score=23.81 Aligned_cols=43 Identities=19% Similarity=0.238 Sum_probs=24.2
Q ss_pred CCCCCCCEEecCCCCCCCCceEEEEeeccCcccccCCCeeeee--CCCCcEEE
Q 010204 128 EGCKQGEVIRMPSATDINWPIVLNVQFSGNYLSTKMDNVDVPI--TKTGMYNL 178 (515)
Q Consensus 128 g~C~~g~~Ii~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~y~I--~ktG~Y~v 178 (515)
..|..|.|++|++.+.+.- ..+.+.+.+ ...+|.| +.+|.|++
T Consensus 24 ~g~~dG~FLVR~S~~~~g~-y~LSv~~~~-------~v~H~~I~~~~~g~~~i 68 (129)
T d1a81a1 24 GGMSDGLYLLRQSRNYLGG-FALSVAHGR-------KAHHYTIERELNGTYAI 68 (129)
T ss_dssp TTCCTTEEEEEECSSSTTC-EEEEEEETT-------EEEEEEEEECTTSCEEE
T ss_pred cCCCCccEEEEccCCCCcc-eEEEeeecc-------cceEEEEEEcCCCCeee
Confidence 4578899999987665542 233333322 1234555 34567765
No 8
>d1i3za_ d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.73 E-value=1.7e+02 Score=21.67 Aligned_cols=42 Identities=21% Similarity=0.191 Sum_probs=24.8
Q ss_pred CCCCCEEecCCCCCCCCceEEEEeeccCcccccCCCeeeee--CCCCcEEEE
Q 010204 130 CKQGEVIRMPSATDINWPIVLNVQFSGNYLSTKMDNVDVPI--TKTGMYNLF 179 (515)
Q Consensus 130 C~~g~~Ii~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~y~I--~ktG~Y~v~ 179 (515)
+..|.|++|++.+++.. -.+.+.+.+ ...+|.| ...|.|++.
T Consensus 23 ~~~G~FLVR~S~~~~g~-~~LSv~~~~-------~v~H~~I~~~~~g~~~~~ 66 (103)
T d1i3za_ 23 GVDGNFLIRDSESVPGA-LCLCVSFKK-------LVYSYRIFREKHGYYRIE 66 (103)
T ss_dssp CSTTEEEEEECSSSTTC-EEEEEECSS-------SEEEEEEEECTTSCEEEC
T ss_pred CCCCeEEEEecCCCCCC-EEEEEEeCC-------eEEEEEeEEcCCCcEEEe
Confidence 45799999988766652 233333221 1345666 457787754
No 9
>d1xu1a_ b.22.1.1 (A:) A proliferation-inducing ligand, APRIL {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.52 E-value=89 Score=24.96 Aligned_cols=20 Identities=25% Similarity=0.189 Sum_probs=16.3
Q ss_pred CeeeeeCCCCcEEEEEEeeC
Q 010204 165 NVDVPITKTGMYNLFFIACD 184 (515)
Q Consensus 165 ~~~y~I~ktG~Y~v~~~~C~ 184 (515)
.-+..|+++|+|+||...|-
T Consensus 39 ~g~L~V~~~G~YyVYsQV~f 58 (137)
T d1xu1a_ 39 GDIVRVWDTGIYLLYSQVLF 58 (137)
T ss_dssp TTEEEECSCEEEEEEEEEEE
T ss_pred CCEEEEccceEEEEEEEEEE
Confidence 45688999999999976654
No 10
>d1dg6a_ b.22.1.1 (A:) Apoptosis-2 ligand, apo2l/TRAIL {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.88 E-value=2.7e+02 Score=22.40 Aligned_cols=17 Identities=18% Similarity=0.448 Sum_probs=13.8
Q ss_pred eeeeeCCCCcEEEEEEe
Q 010204 166 VDVPITKTGMYNLFFIA 182 (515)
Q Consensus 166 ~~y~I~ktG~Y~v~~~~ 182 (515)
-+..|+++|+|+||...
T Consensus 53 G~L~V~~~G~YfVYsQV 69 (162)
T d1dg6a_ 53 GELVIHEKGFYYIYSQT 69 (162)
T ss_dssp TEEEESSCEEEEEEEEE
T ss_pred CEEEeCCCeEEEEEEEE
Confidence 45789999999998644
Done!