Query 010205
Match_columns 515
No_of_seqs 294 out of 859
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 22:10:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010205.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010205hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vfk_A AKAP18 delta; APO, hydr 100.0 4.7E-30 1.6E-34 244.8 15.6 203 285-511 1-204 (205)
2 1vgj_A Hypothetical protein PH 99.9 7.5E-27 2.6E-31 218.5 15.6 181 288-508 2-182 (184)
3 1iuh_A 2'-5' RNA ligase; riken 99.9 3.3E-23 1.1E-27 197.6 17.8 174 289-511 3-182 (198)
4 2d4g_A Hypothetical protein BS 99.8 4.2E-20 1.4E-24 170.8 12.0 166 289-510 3-169 (171)
5 1jh6_A Cyclic phosphodiesteras 99.7 4.4E-17 1.5E-21 154.4 14.2 171 289-511 10-182 (189)
6 2cte_A Vigilin; K homology typ 99.5 4.7E-14 1.6E-18 119.8 7.6 73 151-224 14-87 (94)
7 2dgr_A Ring finger and KH doma 99.4 2E-13 6.7E-18 113.6 8.2 71 150-221 6-76 (83)
8 2ctl_A Vigilin; K homology typ 99.4 7.3E-13 2.5E-17 113.2 8.9 72 152-224 15-90 (97)
9 1vig_A Vigilin; RNA-binding pr 99.4 5.4E-13 1.9E-17 107.5 6.6 66 153-219 4-70 (71)
10 2ctj_A Vigilin; K homology typ 99.4 8.6E-13 3E-17 112.4 7.1 71 152-223 15-87 (95)
11 2ctm_A Vigilin; K homology typ 99.4 1.6E-12 5.4E-17 110.7 8.5 73 151-224 14-88 (95)
12 2ctk_A Vigilin; K homology typ 99.3 1.5E-12 5E-17 112.7 7.5 70 153-223 16-86 (104)
13 2ctf_A Vigilin; K homology typ 99.3 5E-12 1.7E-16 109.0 7.9 69 153-224 26-95 (102)
14 1zzk_A Heterogeneous nuclear r 99.2 2.2E-11 7.7E-16 100.5 8.1 72 151-223 4-78 (82)
15 2opv_A KHSRP protein; KH domai 99.2 2.3E-11 7.9E-16 101.1 7.7 67 153-220 13-84 (85)
16 1x4n_A FAR upstream element bi 99.2 2.7E-11 9.2E-16 102.3 7.3 72 152-224 13-87 (92)
17 1dtj_A RNA-binding neurooncolo 99.2 1.9E-11 6.5E-16 99.2 5.6 67 153-220 2-74 (76)
18 1wvn_A Poly(RC)-binding protei 99.2 2.2E-11 7.7E-16 100.5 6.1 72 150-222 2-76 (82)
19 1x4m_A FAR upstream element bi 99.2 2.5E-11 8.4E-16 102.9 6.3 70 151-221 12-86 (94)
20 2axy_A Poly(RC)-binding protei 99.2 2.8E-11 9.4E-16 98.0 6.0 69 152-221 3-72 (73)
21 1j5k_A Heterogeneous nuclear r 99.2 2.9E-11 9.9E-16 101.5 6.2 72 150-222 10-84 (89)
22 2jzx_A Poly(RC)-binding protei 99.1 5.7E-11 2E-15 109.1 7.8 106 152-258 3-117 (160)
23 2p2r_A Poly(RC)-binding protei 99.1 3.6E-11 1.2E-15 97.8 5.7 69 152-221 3-74 (76)
24 1ec6_A RNA-binding protein NOV 99.1 4.5E-11 1.5E-15 99.7 6.2 70 153-223 2-77 (87)
25 1we8_A Tudor and KH domain con 99.1 8.1E-11 2.8E-15 101.5 6.8 69 152-221 13-86 (104)
26 3krm_A Insulin-like growth fac 99.1 1.9E-10 6.5E-15 105.9 9.6 105 153-258 2-113 (163)
27 2hh3_A KH-type splicing regula 99.1 1.4E-10 4.8E-15 100.7 7.4 71 153-224 10-83 (106)
28 1j4w_A FUSE binding protein; s 99.1 2E-10 6.8E-15 107.1 8.3 105 153-258 2-132 (174)
29 3n89_A Defective in GERM LINE 99.1 1.1E-10 3.8E-15 121.4 7.0 66 151-217 27-102 (376)
30 2anr_A Neuro-oncological ventr 99.1 1.5E-10 5E-15 108.2 6.7 107 151-258 3-132 (178)
31 2jvz_A KH type-splicing, FAR u 99.0 2E-10 7E-15 105.4 6.9 104 154-258 2-119 (164)
32 2hh2_A KH-type splicing regula 99.0 1.9E-10 6.6E-15 99.7 5.9 66 155-221 8-79 (107)
33 1k1g_A SF1-BO isoform; splicin 99.0 3.7E-10 1.3E-14 101.6 6.7 71 151-221 4-99 (131)
34 3krm_A Insulin-like growth fac 98.9 2.5E-09 8.6E-14 98.3 8.4 72 152-224 83-159 (163)
35 2yqr_A KIAA0907 protein; struc 98.9 3.4E-09 1.2E-13 93.7 7.4 70 154-223 12-101 (119)
36 2cpq_A FragIle X mental retard 98.8 1.4E-09 4.9E-14 91.7 4.2 67 150-218 11-78 (91)
37 2jvz_A KH type-splicing, FAR u 98.8 2.2E-09 7.7E-14 98.4 5.2 68 154-222 91-161 (164)
38 2jzx_A Poly(RC)-binding protei 98.8 5.4E-09 1.8E-13 95.8 6.4 69 152-221 87-159 (160)
39 2anr_A Neuro-oncological ventr 98.7 9.6E-09 3.3E-13 95.9 5.4 69 152-221 102-175 (178)
40 1j4w_A FUSE binding protein; s 98.7 1.1E-08 3.9E-13 95.1 5.1 65 153-218 103-173 (174)
41 3n89_A Defective in GERM LINE 98.7 1.6E-08 5.5E-13 105.2 6.3 69 148-217 180-257 (376)
42 2qnd_A FMR1 protein; KH domain 98.5 5.2E-08 1.8E-12 88.7 5.2 65 156-221 69-142 (144)
43 2bl5_A MGC83862 protein, quaki 98.5 9.5E-08 3.2E-12 86.7 5.8 65 155-219 3-99 (140)
44 2e3u_A PH-DIM2P, hypothetical 98.4 2.3E-07 7.8E-12 90.2 6.7 63 155-219 35-101 (219)
45 3u1k_A Polyribonucleotide nucl 98.2 5.3E-07 1.8E-11 99.8 4.2 64 153-219 566-629 (630)
46 2qnd_A FMR1 protein; KH domain 98.1 1.5E-06 5.2E-11 79.0 4.4 94 152-258 2-95 (144)
47 2e3u_A PH-DIM2P, hypothetical 97.9 1.3E-05 4.5E-10 77.8 6.4 53 164-221 139-191 (219)
48 1tua_A Hypothetical protein AP 97.8 2.5E-05 8.7E-10 74.3 6.6 64 155-220 5-72 (191)
49 1tua_A Hypothetical protein AP 97.6 4.2E-05 1.4E-09 72.8 4.0 54 163-221 107-160 (191)
50 4aid_A Polyribonucleotide nucl 97.5 1.6E-05 5.4E-10 89.2 0.9 66 153-221 569-634 (726)
51 3v69_A Protein filia; RNA-bind 96.9 0.0018 6.1E-08 58.1 6.7 68 156-224 58-127 (140)
52 2fsq_A ATU0111 protein; alpha- 96.7 0.0048 1.6E-07 60.7 9.1 168 289-492 44-227 (243)
53 3cdi_A Polynucleotide phosphor 95.4 0.0025 8.5E-08 71.6 0.0 65 154-221 560-624 (723)
54 1e3p_A Guanosine pentaphosphat 95.1 0.0011 3.8E-08 74.8 -4.2 62 155-219 599-660 (757)
55 2z0s_A Probable exosome comple 81.2 2.6 8.9E-05 40.7 6.6 63 156-221 150-212 (235)
56 2ba0_A Archeal exosome RNA bin 75.5 3.3 0.00011 39.9 5.4 61 156-220 138-198 (229)
57 2ja9_A Exosome complex exonucl 70.9 3.6 0.00012 38.1 4.3 58 157-217 94-152 (175)
58 2cxc_A NUSA; transcription ter 69.9 2.6 8.8E-05 38.0 2.9 38 154-191 36-73 (144)
59 2cxc_A NUSA; transcription ter 66.2 1.3 4.5E-05 39.9 0.2 38 153-190 102-139 (144)
60 2ctf_A Vigilin; K homology typ 60.1 0.11 3.7E-06 44.2 -7.7 51 200-258 5-55 (102)
61 2nn6_G Exosome complex exonucl 56.8 3.8 0.00013 41.0 1.6 59 156-217 212-270 (289)
62 2je6_I RRP4, exosome complex R 55.3 1.8 6.3E-05 42.3 -1.0 58 156-216 157-214 (251)
63 2asb_A Transcription elongatio 51.4 8.9 0.0003 37.6 3.2 39 154-192 184-222 (251)
64 3udc_A Small-conductance mecha 50.4 59 0.002 31.7 9.1 74 355-432 192-268 (285)
65 2pt7_G HP1451, hypothetical pr 48.3 8.7 0.0003 34.8 2.4 31 154-184 33-63 (152)
66 1k0r_A NUSA; two component arr 45.2 12 0.00041 38.7 3.1 40 153-192 306-345 (366)
67 2vv5_A MSCS, small-conductance 45.1 70 0.0024 31.3 8.7 90 342-447 186-276 (286)
68 1hh2_P NUSA, N utilization sub 45.0 12 0.0004 38.4 3.0 39 153-191 302-340 (344)
69 2o5a_A BH1328 protein; BHR21, 41.5 61 0.0021 28.3 6.7 63 354-431 4-66 (125)
70 2id1_A Hypothetical protein; a 37.4 78 0.0027 27.8 6.8 61 356-431 6-66 (130)
71 1wh9_A 40S ribosomal protein S 34.1 16 0.00053 30.3 1.6 30 155-184 36-65 (92)
72 1j26_A Immature colon carcinom 33.0 20 0.00069 30.8 2.2 30 195-224 75-108 (112)
73 2fsq_A ATU0111 protein; alpha- 32.3 72 0.0025 30.9 6.3 60 298-372 150-210 (243)
74 3i24_A HIT family hydrolase; s 32.3 71 0.0024 28.3 5.8 92 335-429 36-138 (149)
75 3i0u_A Phosphothreonine lyase 31.5 2.1E+02 0.0073 26.9 8.9 79 340-432 80-172 (218)
76 3ups_A Iojap-like protein; PSI 28.8 89 0.003 27.6 5.7 63 354-431 20-82 (136)
77 1jh6_A Cyclic phosphodiesteras 27.7 73 0.0025 28.8 5.2 42 393-446 4-45 (189)
78 3iev_A GTP-binding protein ERA 26.5 36 0.0012 33.4 3.0 37 153-189 239-284 (308)
79 3bo6_A Hydrophilic protein, VI 25.7 1.9E+02 0.0065 27.3 7.5 80 339-432 81-174 (220)
80 2ctj_A Vigilin; K homology typ 24.2 4.2 0.00014 33.8 -3.6 30 230-259 17-46 (95)
81 3ohe_A Histidine triad (HIT) p 22.2 2E+02 0.007 24.8 6.8 89 335-426 36-135 (137)
82 1wf3_A GTP-binding protein; GT 21.4 25 0.00087 34.5 0.8 26 155-180 231-257 (301)
83 4dh9_Y YAEJ; ribosome, YAEJ, r 21.4 1.2E+02 0.004 26.9 5.1 56 169-226 23-102 (140)
84 3gku_A Probable RNA-binding pr 21.1 29 0.00099 33.4 1.1 37 154-190 92-128 (225)
No 1
>2vfk_A AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Homo sapiens} PDB: 2vfl_A* 2vfy_A
Probab=99.97 E-value=4.7e-30 Score=244.79 Aligned_cols=203 Identities=21% Similarity=0.384 Sum_probs=162.9
Q ss_pred ccCCceEEEEccCCcchhHHHhhhccccccccccccCCCCCCCCCCCCcccccCCCCceEEeeecccCChhhHHHHHHHH
Q 010205 285 VDQEHKVAVELNIGDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVL 364 (515)
Q Consensus 285 ~rpn~FVAv~l~~~~~~~~v~~~q~~i~~~~~~~~~~r~~~~~~~Gl~~~~fv~p~~LHLTL~fLgL~~eeei~~a~~aL 364 (515)
+++++||||.++++++.+.+..+|+.+.- .++|+ ...|++++++||||.|||++++++++++.++|
T Consensus 1 ~~~r~Fial~~~~~~~~~~l~~~~~~l~~-------------~~~~~-~~~~v~~~~~HiTL~flg~~~~~~~~~l~~~l 66 (205)
T 2vfk_A 1 YQPNYFLSIPITNKKITAGIKVLQNSILR-------------QDNRL-TKAMVGDGSFHITLLVMQLLNEDEVNIGTDAL 66 (205)
T ss_dssp CCCCEEEEEECCCHHHHHHHHHHHHHHHH-------------HCGGG-GGGBCCTTCCEEEEEEECCCSHHHHHHHHHHH
T ss_pred CCCCEEEEEEcCCHHHHHHHHHHHHHHHh-------------cCcch-HHHhCCcCccEEEEEEEEcCCHHHHHHHHHHH
Confidence 36899999999987899999999988620 01122 23799999999999999999999999999999
Q ss_pred HHhHHHhhhhcCCCCeEEEecccccCCCCCCCceEEEEeccccCchhHHHHHHHHHHHHHHHCCccccccCCCCcccccE
Q 010205 365 KSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKQLHA 444 (515)
Q Consensus 365 ~~i~~~i~~iL~~~pf~l~lkGLg~F~~dp~~~rVLyagV~~~~~~~~L~~L~~~L~~~f~~~Gl~~e~d~~r~fk~PHi 444 (515)
+++...+.+++..+||.|+|.|+|+|++ +|||+++.+.++.+.|.+|++.|.+.|..+|+...+ .++|+ |||
T Consensus 67 ~~~~~~~~~~~~~~pf~l~l~g~~~F~~-----~vl~~~v~~~~~~~~L~~L~~~l~~~~~~~g~~~~~--~~~f~-PHi 138 (205)
T 2vfk_A 67 LELKPFVEEILEGKHLTLPFHGIGTFQG-----QVGFVKLADGDHVSALLEIAETAKRTFQEKGILAGE--SRTFK-PHL 138 (205)
T ss_dssp HHHHHHHHHHTTTSCCEEEEEEEEEETT-----TEEEEEECCSHHHHHHHHHHHHHHHHHHTTTCCBCC--SSCCC-CCE
T ss_pred HHHHHHHHHHhCCCCcEEEEechhhCCC-----cEEEEeecccccHHHHHHHHHHHHHHHHHcCCCcCC--CCCcc-eEE
Confidence 9987766667777999999999999987 799999975323478999999999999999995322 58999 999
Q ss_pred EeeeecccccccCCCccccccHHHHHHHhCCCccccEEecEEEEEeee-cCCCCCceeEeEEEeCCCC
Q 010205 445 TLMNIRHKKRRKGTRRVDYFDARDIFKQFGSKEWGEYLIKEAHLSQRF-VYDESGFYHCCASIPFPEN 511 (515)
Q Consensus 445 TLar~r~~~~~~g~~~~~~fda~~il~~~~d~~fG~~~V~~I~Ls~l~-~~~~~g~Y~~i~si~L~~~ 511 (515)
||||.++...... .....++ .++++.+.++.||.+.|++|+|+++. ..+.+|+|+++++|+|++.
T Consensus 139 Tlar~~~~~~~~~-~~~~~~~-~~~l~~~~~~~~~~~~v~~i~L~~~~~~~~~~g~Y~~~~~~~L~~~ 204 (205)
T 2vfk_A 139 TFMKLSKAPMLWK-KGVRKIE-PGLYEQFIDHRFGEEILYQIDLCSMLKKKQSNGYYHCESSIVIGEK 204 (205)
T ss_dssp EEEEGGGCHHHHH-TTCSSCC-GGGGGGGTTCEEEEEECCEEEEEESSSCCCTTSCCCEEEEEECSSC
T ss_pred EEEecccchhhhh-ccccccC-HHHHHHhcCCcCcEEEeCEEEEEEcCCCCCCCCcEEEEEEEecCCC
Confidence 9999875310000 0011233 36788899999999999999998865 4456899999999999864
No 2
>1vgj_A Hypothetical protein PH0099; alpha+beta, LIGT-like, structural genomics, ligase; 1.94A {Pyrococcus horikoshii} PDB: 1vdx_A 2fyh_A
Probab=99.94 E-value=7.5e-27 Score=218.50 Aligned_cols=181 Identities=16% Similarity=0.305 Sum_probs=150.7
Q ss_pred CceEEEEccCCcchhHHHhhhccccccccccccCCCCCCCCCCCCcccccCCCCceEEeeecccCChhhHHHHHHHHHHh
Q 010205 288 EHKVAVELNIGDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSI 367 (515)
Q Consensus 288 n~FVAv~l~~~~~~~~v~~~q~~i~~~~~~~~~~r~~~~~~~Gl~~~~fv~p~~LHLTL~fLgL~~eeei~~a~~aL~~i 367 (515)
.+|||+.++. ++.+.+..+|+.+. ..+. ...|++|++|||||.|||++++++++++.++|+++
T Consensus 2 R~Fial~~p~-~~~~~l~~~~~~l~---------------~~~~-~~~~v~~~~lHiTL~flg~~~~~~~~~l~~~l~~~ 64 (184)
T 1vgj_A 2 RAFIAIDVNE-SVRDSLVRAQDYIG---------------SKEA-KIKFVERENLHITLKFLGEITEEQAEEIKNILKKI 64 (184)
T ss_dssp EEEEEEECCH-HHHHHHHHHHHHHC---------------SSSE-EEEECCGGGCEEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCH-HHHHHHHHHHHHHh---------------hcCC-CcEecCccccEEEEEeecCCCHHHHHHHHHHHHHH
Confidence 3799999986 88999999998763 1111 24799999999999999999999999999999886
Q ss_pred HHHhhhhcCCCCeEEEecccccCCCCCCCceEEEEeccccCchhHHHHHHHHHHHHHHHCCccccccCCCCcccccEEee
Q 010205 368 SSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKQLHATLM 447 (515)
Q Consensus 368 ~~~i~~iL~~~pf~l~lkGLg~F~~dp~~~rVLyagV~~~~~~~~L~~L~~~L~~~f~~~Gl~~e~d~~r~fk~PHiTLa 447 (515)
.. ..+||.+++.|+|+|++ +++|+|||++++++ +.|.+|++.|.+.|...|+..+ . +|+ |||||+
T Consensus 65 ~~------~~~pf~l~l~g~g~F~~-~~~p~vl~~~v~~~---~~L~~L~~~l~~~l~~~g~~~~---~-~f~-PHiTLa 129 (184)
T 1vgj_A 65 AE------KYKKHEVKVKGIGVFPN-PNYIRVIWAGIEND---EIIREMAREIEDELAKLGFKKE---G-NFV-AHITLG 129 (184)
T ss_dssp HT------TSBCEEEEEEEEEEEEC-SSSEEEEEEEEETC---HHHHHHHHHHHHHHHTTTCCCC---C-CCC-CEEEEE
T ss_pred Hc------cCCCeEEEEeeEeeCCC-CCCCcEEEEEecCC---HHHHHHHHHHHHHHHHcCCCCC---C-Ccc-ceEEEE
Confidence 32 45899999999999997 88999999999852 7899999999999999999876 5 899 999999
Q ss_pred eecccccccCCCccccccHHHHHHHhCCCccccEEecEEEEEeeecCCCCCceeEeEEEeC
Q 010205 448 NIRHKKRRKGTRRVDYFDARDIFKQFGSKEWGEYLIKEAHLSQRFVYDESGFYHCCASIPF 508 (515)
Q Consensus 448 r~r~~~~~~g~~~~~~fda~~il~~~~d~~fG~~~V~~I~Ls~l~~~~~~g~Y~~i~si~L 508 (515)
|.+.... .-++.++++.+.++.+|.+.|++|+|++....+.|+.|+++++|+|
T Consensus 130 r~~~~~~--------~~~~~~~~~~~~~~~~~~~~v~~~~L~~s~~~~~g~~y~~l~~~~L 182 (184)
T 1vgj_A 130 RVKFVKD--------KLGLTMKLKELANEDFGSFVVDAIELKKSTLTPKGPIYETLARFEL 182 (184)
T ss_dssp EEEEESC--------HHHHHHHHHHTTTCEEEEEEECEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eecccCc--------HHHHHHHHHHhcCCCCCcEEEeEEEEEEeeecCCCCceeEEEEEeC
Confidence 9764321 0124477888889999999999999976544355799999999999
No 3
>1iuh_A 2'-5' RNA ligase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: d.61.1.2
Probab=99.90 E-value=3.3e-23 Score=197.56 Aligned_cols=174 Identities=16% Similarity=0.170 Sum_probs=140.1
Q ss_pred ceEEEEccCCcchhHHHhhhccccccccccccCCCCCCCCCCCCcccccCCCCceEEeeecccCChhhHHHHHHHHHHhH
Q 010205 289 HKVAVELNIGDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSIS 368 (515)
Q Consensus 289 ~FVAv~l~~~~~~~~v~~~q~~i~~~~~~~~~~r~~~~~~~Gl~~~~fv~p~~LHLTL~fLgL~~eeei~~a~~aL~~i~ 368 (515)
+||||.++. ++.+.|..+|+.+. ... ...|++++++||||.|+|++++++++++.++|.++.
T Consensus 3 lFial~~p~-~~~~~l~~~~~~l~--------------~~~---~~r~v~~~~~HiTL~flgev~~~~~~~l~~~l~~~~ 64 (198)
T 1iuh_A 3 LFYAVFLPE-EVRAALVEAQTKVR--------------PFR---GWKPVPPHQLHLTLLFLGERPEEELPDYLALGHRLA 64 (198)
T ss_dssp EEEEEECCH-HHHHHHHHHHGGGT--------------TCT---TEEECCGGGCEEEEEEEEECCGGGHHHHHHHHHHHH
T ss_pred EEEEEeCCH-HHHHHHHHHHHHhh--------------hhc---CCcccCCCCCEEEEEeCCcCCHHHHHHHHHHHHHHh
Confidence 799999975 88999999998763 111 236999999999999999999999999999998874
Q ss_pred HHhhhhcCCCCeEEEecccccCCCCCCCceEEEEeccccCchhHHHHHHHHHHHHHHHC-C-----ccccccCCCCcccc
Q 010205 369 SKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEA-G-----LVFHRDYNKKLKQL 442 (515)
Q Consensus 369 ~~i~~iL~~~pf~l~lkGLg~F~~dp~~~rVLyagV~~~~~~~~L~~L~~~L~~~f~~~-G-----l~~e~d~~r~fk~P 442 (515)
. ..+||.|+|.|+|+|++ ..+|+|||+++ . ...|.+|++.|.+.+... | +..+ .++|+ |
T Consensus 65 ~------~~~pf~l~l~g~g~F~~-~~~p~vl~l~v-~---~~~L~~L~~~l~~~l~~~~g~~~~~~~~~---~~~f~-P 129 (198)
T 1iuh_A 65 R------LEAPFRARLRGTGYFPN-EGTPRVWFAKA-E---AEGFLRLAEGLRAGVEELLGEEAVRIPGW---DKPFK-P 129 (198)
T ss_dssp H------HSCCEEEEEEEEEEESS-SSSCSEEEEEE-E---CHHHHHHHHHHHHHHHHHHGGGGGGSTTT---TSCCC-C
T ss_pred c------cCCCeEEEEcceEECCC-CCCCCEEEEEC-C---CHHHHHHHHHHHHHHHHhcCCCcccccCC---CCCCC-C
Confidence 2 34899999999999986 77899999999 4 478999999999999999 9 8775 57999 9
Q ss_pred cEEeeeecccccccCCCccccccHHHHHHHhCCCccccEEecEEEEEeeecCCCCCceeEeEEEeCCCC
Q 010205 443 HATLMNIRHKKRRKGTRRVDYFDARDIFKQFGSKEWGEYLIKEAHLSQRFVYDESGFYHCCASIPFPEN 511 (515)
Q Consensus 443 HiTLar~r~~~~~~g~~~~~~fda~~il~~~~d~~fG~~~V~~I~Ls~l~~~~~~g~Y~~i~si~L~~~ 511 (515)
||||+|.+.... ... ..+ . .| .+.|++|+|.+......|+.|+++++|+|.+.
T Consensus 130 HiTLar~~~~~~------~l~----~~l---~--~~-~~~v~~~~L~~S~l~~~G~~y~~l~~~~L~~~ 182 (198)
T 1iuh_A 130 HITLARRKAPAP------RVP----PVL---F--GL-EWPVEGFALVRSELKPKGPVYTVLEKFSLRGE 182 (198)
T ss_dssp EEEEEEESSCCC------CCC----CCC---C--CE-EEEECEEEEEEEEECSSSEEEEEEEEEECCCC
T ss_pred cEEeEeccCcch------hHH----Hhh---c--Cc-eEEecEEEEEEEEeCCCCCeeeEEEEEECCCC
Confidence 999999764221 110 111 1 34 78999999965443355789999999999754
No 4
>2d4g_A Hypothetical protein BSU11850; beta barrel, alpha helix, structural genomics, unknown function; 2.30A {Bacillus subtilis}
Probab=99.82 E-value=4.2e-20 Score=170.84 Aligned_cols=166 Identities=14% Similarity=0.180 Sum_probs=129.6
Q ss_pred ceEEEEccCCcchhHHHhhhccccccccccccCCCCCCCCCCCCcccccCCCCceEEeeecccCChhhHHHHHHHHHHhH
Q 010205 289 HKVAVELNIGDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSIS 368 (515)
Q Consensus 289 ~FVAv~l~~~~~~~~v~~~q~~i~~~~~~~~~~r~~~~~~~Gl~~~~fv~p~~LHLTL~fLgL~~eeei~~a~~aL~~i~ 368 (515)
+|||+.++. ++.+.+..+|+.+. .+ ..|++| ||||.|++.+++++++++.++|+++.
T Consensus 3 ~Fiai~~~~-~~~~~l~~~~~~~~----------------~~---~~~v~p---HiTL~f~g~~~~~~~~~l~~~l~~~~ 59 (171)
T 2d4g_A 3 YGIVLFPSK-KLQDLANSYRKRYD----------------PS---YSLIPP---HLTLRASFECAEEKADQLVSHLRNIA 59 (171)
T ss_dssp EEEEBCCCH-HHHHHHHHHHHHHC----------------GG---GGTSCS---CBCCSSCEECCGGGHHHHHHHHHHHH
T ss_pred EEEEEeCCH-HHHHHHHHHHHHhC----------------cc---cCCCCC---eEEeecCCcCChHHHHHHHHHHHHHH
Confidence 799999975 88999999998652 11 258999 99999999999999999988888874
Q ss_pred HHhhhhcCCCCeEEEecccccCCCCCCCceEEEEeccccCchhHHHHHHHHHHHHHHHCCccccccCCCCcccccEEeee
Q 010205 369 SKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKQLHATLMN 448 (515)
Q Consensus 369 ~~i~~iL~~~pf~l~lkGLg~F~~dp~~~rVLyagV~~~~~~~~L~~L~~~L~~~f~~~Gl~~e~d~~r~fk~PHiTLar 448 (515)
. ..+||.|++.|+|+|+. . ..|||+++.+ ...|.+|++.|.+.|... .+ .++|+ |||||+|
T Consensus 60 ~------~~~pf~l~l~~~g~F~~--~-~~vl~l~~~~---~~~L~~L~~~l~~~~~~~---~~---~~~f~-PHiTLar 120 (171)
T 2d4g_A 60 K------ESHPLVLKMTKYSSFAP--V-NNVIYIKAEP---TEELKTLNEKLYTGVLAG---EQ---EYNFV-PHVTVGQ 120 (171)
T ss_dssp H------TCCCEEEEEEEEEECTT--T-CCCEEEEECC---CHHHHHHHHHTTSGGGCS---CC---CSCCC-CEEEEEC
T ss_pred c------cCCCEEEEECCcEEeCC--C-CcEEEEEccC---ChHHHHHHHHHHhccccc---cc---CCCCC-CeEEeec
Confidence 2 45899999999999973 1 1499999975 478999999999876541 23 57899 9999998
Q ss_pred ecccccccCCCccccccHHHHHHHhCCCcc-ccEEecEEEEEeeecCCCCCceeEeEEEeCCC
Q 010205 449 IRHKKRRKGTRRVDYFDARDIFKQFGSKEW-GEYLIKEAHLSQRFVYDESGFYHCCASIPFPE 510 (515)
Q Consensus 449 ~r~~~~~~g~~~~~~fda~~il~~~~d~~f-G~~~V~~I~Ls~l~~~~~~g~Y~~i~si~L~~ 510 (515)
.... . ++.++++.+....| +.+.|++|+|... +.|+.|+++++|+|.+
T Consensus 121 ~~~~-------~----~~~~~~~~~~~~~~~~~~~v~~i~L~~s---~~g~~y~~l~~~~L~~ 169 (171)
T 2d4g_A 121 NLSD-------D----EHSDVLGQLKMQEVSHEEIVDRFHLLYQ---LENGSWTVYETFLLGR 169 (171)
T ss_dssp SCCH-------H----HHHHHHHHHTTSCCCEEEEECEEEEEEE---CTTSCEEEEEEEECC-
T ss_pred CCCH-------H----HHHHHHHHhcCCCCceeEEECeEEEEEE---CCCCcEEEEEEEecCC
Confidence 4321 1 13366777654444 6899999999776 4578999999999964
No 5
>1jh6_A Cyclic phosphodiesterase; ADP-ribose 1'',2''-cyclic phosphate, RNA processing, 2',3'-C nucleotide phosphodiesterase, hydrolase; 1.80A {Arabidopsis thaliana} SCOP: d.61.1.1 PDB: 1fsi_A 1jh7_A*
Probab=99.72 E-value=4.4e-17 Score=154.45 Aligned_cols=171 Identities=9% Similarity=-0.011 Sum_probs=127.4
Q ss_pred ceEEEEccCCcchhHHHhhhccccccccccccCCCCCCCCCCCCcccccCCCCceEEeeecccCChhhHHHHHHHHHHhH
Q 010205 289 HKVAVELNIGDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSIS 368 (515)
Q Consensus 289 ~FVAv~l~~~~~~~~v~~~q~~i~~~~~~~~~~r~~~~~~~Gl~~~~fv~p~~LHLTL~fLgL~~eeei~~a~~aL~~i~ 368 (515)
.|+++. .+++.+.+..+++.+. ...+.++.++|||| ||..+.+ ++.+.+.|+++.
T Consensus 10 ~f~~~p--p~~~~~~l~~~~~~l~--------------------~~~~~~~~~~HiTL--lG~~~~~-~~~l~~~L~~~a 64 (189)
T 1jh6_A 10 SVWALP--DEESEPRFKKLMEALR--------------------SEFTGPRFVPHVTV--AVSAYLT-ADEAKKMFESAC 64 (189)
T ss_dssp EEEEEE--CTTTHHHHHHHHHHHH--------------------HHHTCCCCCCCEEE--EEEEEEC-HHHHHHHHHHHH
T ss_pred EEEEEC--CHHHHHHHHHHHHHHH--------------------HHcCCCCCCCEEEE--eCCCCCC-HHHHHHHHHHHH
Confidence 466666 5689999999998763 11245788999999 8988765 778888888764
Q ss_pred HHhhhhcCCCCeEEEecccccCCCCCCCceEEEEeccccCchhHHHHHHHHHHHHHHHCCccccccCCCCcccccEEeee
Q 010205 369 SKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKQLHATLMN 448 (515)
Q Consensus 369 ~~i~~iL~~~pf~l~lkGLg~F~~dp~~~rVLyagV~~~~~~~~L~~L~~~L~~~f~~~Gl~~e~d~~r~fk~PHiTLar 448 (515)
. ..+||.|+|.|+|+|. ..+||||++|++ .+.|.+|++.+++. .|+..+ ++|+ |||||+|
T Consensus 65 ~------~~~pf~l~l~g~g~~~---~~~rvlw~~v~~---~~~L~~L~~~v~~~---~g~~~~----~~f~-PHlTLar 124 (189)
T 1jh6_A 65 D------GLKAYTATVDRVSTGT---FFFQCVFLLLQT---TPEVMEAGEHCKNH---FNCSTT----TPYM-PHLSLLY 124 (189)
T ss_dssp H------TCBCEEEEEEEEEEEE---ETTEEEEEEECC---CHHHHHHHHHHHHH---TTCCCC----SCCC-CEEEEEC
T ss_pred h------hCCCeEEEEcceeccC---ccceEEEEeecC---CHHHHHHHHHHHHH---hCCCCC----CCCC-CeEEEEE
Confidence 3 4589999999999953 367999999975 37899999999886 688753 7899 9999998
Q ss_pred ecccccccCCCccccccHHHHHHHh-CCCccccEEecEEEEEeeec-CCCCCceeEeEEEeCCCC
Q 010205 449 IRHKKRRKGTRRVDYFDARDIFKQF-GSKEWGEYLIKEAHLSQRFV-YDESGFYHCCASIPFPEN 511 (515)
Q Consensus 449 ~r~~~~~~g~~~~~~fda~~il~~~-~d~~fG~~~V~~I~Ls~l~~-~~~~g~Y~~i~si~L~~~ 511 (515)
.+.... . .-++.+.++.+ ....++.|.|++|.|.+... ...-.-|..+++++|+..
T Consensus 125 ~~~~~~-----~--~~~~~~~l~~~~~~~~~~~~~v~~~~L~~s~~~~~~~~~w~l~~~~~~~~~ 182 (189)
T 1jh6_A 125 AELTEE-----E--KKNAQEKAYTLDSSLDGLSFRLNRLALCKTDTEDKTLETWETVAVCNLNPG 182 (189)
T ss_dssp CCCCHH-----H--HHHHHHHHHHHCTTCTTCEEEEEEEEEEECCTTCTTCTTCEEEEEEECBC-
T ss_pred ecCCHH-----H--HHHHHHHHHhhccCCCCCcEEeeEEEEEEeCCCCCccCeEEEEEEEEcCCC
Confidence 653211 0 01233556556 56778999999999966543 124578999999999753
No 6
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.48 E-value=4.7e-14 Score=119.79 Aligned_cols=73 Identities=26% Similarity=0.417 Sum_probs=67.4
Q ss_pred CCCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-CCcEEEEccChhHHHHHHHHHHHHHHHhhh
Q 010205 151 AERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 224 (515)
Q Consensus 151 ~~~~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~-~~~I~I~G~s~~~v~~A~~~I~~iv~e~~~ 224 (515)
..+++..+.||+++||+|||+||.++|+|+++|||+|+||+.++ ++.|+|+|. ++++++|++.|+.++.+..+
T Consensus 14 ~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~~~~~V~I~G~-~e~v~~A~~~I~~i~~~~~~ 87 (94)
T 2cte_A 14 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGT-KEGIEKARHEVLLISAEQDK 87 (94)
T ss_dssp CSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTSSCCEEEEEEC-HHHHHHHHHHHHHHHHHHHT
T ss_pred CCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCCCCCCeEEEEEC-HHHHHHHHHHHHHHhhcccc
Confidence 46789999999999999999999999999999999999998654 589999998 89999999999999998655
No 7
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=2e-13 Score=113.62 Aligned_cols=71 Identities=27% Similarity=0.436 Sum_probs=64.4
Q ss_pred CCCCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHH
Q 010205 150 SAERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAE 221 (515)
Q Consensus 150 ~~~~~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~iv~e 221 (515)
..++.+..+.||.+++|+||||+|+|+|+|+++|||+|+||+.++...|+|+|. +++|++|++.|+.++..
T Consensus 6 ~~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~~~~~v~ItG~-~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 6 SGGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGM-PENVDRAREEIEAHITL 76 (83)
T ss_dssp SCCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSSSCCEEEEEEC-TTTHHHHHHHHHHHHHS
T ss_pred CCCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCCCCCeEEEEcC-HHHHHHHHHHHHHHHhc
Confidence 346789999999999999999999999999999999999998777778999996 69999999999997654
No 8
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.39 E-value=7.3e-13 Score=113.19 Aligned_cols=72 Identities=26% Similarity=0.377 Sum_probs=65.6
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC----CCcEEEEccChhHHHHHHHHHHHHHHHhhh
Q 010205 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK----EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 224 (515)
Q Consensus 152 ~~~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~----~~~I~I~G~s~~~v~~A~~~I~~iv~e~~~ 224 (515)
..++..+.||+++|+.||||||+++++|+++|||+|+||..++ .+.|+|+|. ++++.+|+++|+.|+.+...
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~-~e~v~~A~~~I~~iv~e~e~ 90 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGY-EKNTEAARDAILRIVGELEQ 90 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESC-HHHHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeC-HHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999999998764 358999997 89999999999999988654
No 9
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.38 E-value=5.4e-13 Score=107.54 Aligned_cols=66 Identities=18% Similarity=0.405 Sum_probs=59.6
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-CCcEEEEccChhHHHHHHHHHHHHH
Q 010205 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAII 219 (515)
Q Consensus 153 ~~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~-~~~I~I~G~s~~~v~~A~~~I~~iv 219 (515)
-.+..+.||+++||.|||+||+++++|+++|||+|+||..++ ++.|+|+|+ .+++++|+++|+.|+
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~~~~~V~I~G~-~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGD-PQGVQQAKRELLELA 70 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCCSSSEEEEEEES-SHHHHHHHHHHHHTC
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCCCcccEEEEEcC-HHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999999999998764 458999998 689999999998763
No 10
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.36 E-value=8.6e-13 Score=112.43 Aligned_cols=71 Identities=24% Similarity=0.396 Sum_probs=64.2
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHh-CcEEEcCCCCC-CCcEEEEccChhHHHHHHHHHHHHHHHhh
Q 010205 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEM-GVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAIIAEAV 223 (515)
Q Consensus 152 ~~~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT-~~~I~iP~~~~-~~~I~I~G~s~~~v~~A~~~I~~iv~e~~ 223 (515)
...+.++.||+++|+.|||+||.++|+|+++| ||+|+||..++ ++.|+|.|++ ++|++|+++|+.|+.+..
T Consensus 15 ~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~~~~V~I~G~~-~~v~~A~~~I~~iv~e~e 87 (95)
T 2ctj_A 15 NIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPS-SDVEKAKKQLLHLAEEKQ 87 (95)
T ss_dssp SSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTTCCEEEEESCH-HHHHHHHHHHHHHHHHHS
T ss_pred hcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCCcceEEEEcCH-HHHHHHHHHHHHHHhhhh
Confidence 34567899999999999999999999999999 99999999775 5689999985 599999999999999854
No 11
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.35 E-value=1.6e-12 Score=110.73 Aligned_cols=73 Identities=23% Similarity=0.307 Sum_probs=65.9
Q ss_pred CCCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC--CCcEEEEccChhHHHHHHHHHHHHHHHhhh
Q 010205 151 AERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK--EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 224 (515)
Q Consensus 151 ~~~~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~--~~~I~I~G~s~~~v~~A~~~I~~iv~e~~~ 224 (515)
..+.+..+.||+++||.|||+||+++|+|+++|||+|+||..++ .+.|+|+|. .++|++|++.|+.|+.+..+
T Consensus 14 ~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G~-~e~v~~A~~~I~~i~~e~~~ 88 (95)
T 2ctm_A 14 EQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGL-PENVEEAIDHILNLEEEYLA 88 (95)
T ss_dssp TTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEESC-HHHHHHHHHHHHHHHHHHHT
T ss_pred cccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEEcC-HHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999998764 347999997 69999999999999998665
No 12
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.34 E-value=1.5e-12 Score=112.70 Aligned_cols=70 Identities=26% Similarity=0.399 Sum_probs=64.1
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-CCcEEEEccChhHHHHHHHHHHHHHHHhh
Q 010205 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAIIAEAV 223 (515)
Q Consensus 153 ~~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~-~~~I~I~G~s~~~v~~A~~~I~~iv~e~~ 223 (515)
.....+.||+++||.|||+||+++|+|+++|||+|+||..+. ++.|+|+|. .+++++|++.|+.++.+..
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~-~e~v~~A~~~I~~i~~e~e 86 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGL-AANLDRAKAGLLERVKELQ 86 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEEC-HHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCCCcceEEEEcC-HHHHHHHHHHHHHHHhhHH
Confidence 588999999999999999999999999999999999998765 468999997 5999999999999987744
No 13
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.29 E-value=5e-12 Score=109.03 Aligned_cols=69 Identities=30% Similarity=0.446 Sum_probs=63.7
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHH-hCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHHhhh
Q 010205 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKE-MGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAEAVE 224 (515)
Q Consensus 153 ~~~~~v~Ip~~~~~~IIGk~G~t~k~iE~e-T~~~I~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~iv~e~~~ 224 (515)
..+.++.||+.+|++|||++|+++|+|+++ ++++|+||+ +++.|+|+|+ ++.|++|+.+|+.+++++..
T Consensus 26 ~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~--~~~~ItI~G~-~~~V~~a~~~I~~~v~el~~ 95 (102)
T 2ctf_A 26 FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE--GEDKITLEGP-TEDVSVAQEQIEGMVKDLIN 95 (102)
T ss_dssp CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS--SSCEEEEEEC-HHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC--CCCEEEEECC-HHHHHHHHHHHHHHHHHHHh
Confidence 378999999999999999999999999997 699999998 4578999997 89999999999999998765
No 14
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.22 E-value=2.2e-11 Score=100.53 Aligned_cols=72 Identities=21% Similarity=0.274 Sum_probs=63.8
Q ss_pred CCCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHHhh
Q 010205 151 AERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEAV 223 (515)
Q Consensus 151 ~~~~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~---~~~I~I~G~s~~~v~~A~~~I~~iv~e~~ 223 (515)
..+.+..+.||.++++.||||+|+++|+|+++|||+|+|+.... .+.|+|+|. +++|++|+..|+.++.+..
T Consensus 4 g~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~~~ 78 (82)
T 1zzk_A 4 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGT-QDQIQNAQYLLQNSVKQYS 78 (82)
T ss_dssp CCCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEEC-HHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeC-HHHHHHHHHHHHHHHHhcc
Confidence 34788999999999999999999999999999999999987522 357999995 8999999999999998743
No 15
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.21 E-value=2.3e-11 Score=101.13 Aligned_cols=67 Identities=25% Similarity=0.374 Sum_probs=59.7
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-----CCcEEEEccChhHHHHHHHHHHHHHH
Q 010205 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-----EDSIIIEGNSTDSVAKASEKIQAIIA 220 (515)
Q Consensus 153 ~~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~-----~~~I~I~G~s~~~v~~A~~~I~~iv~ 220 (515)
.....+.||.+++|.||||+|+|+|+|+++|||+|+|+..+. ...|+|+| +++++++|++.|+.++.
T Consensus 13 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G-~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 13 GTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIG-DPYKVQQACEMVMDILR 84 (85)
T ss_dssp SEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEE-CHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHhc
Confidence 457899999999999999999999999999999999998543 12499999 78999999999999875
No 16
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.19 E-value=2.7e-11 Score=102.30 Aligned_cols=72 Identities=22% Similarity=0.391 Sum_probs=64.6
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHHhhh
Q 010205 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 224 (515)
Q Consensus 152 ~~~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~---~~~I~I~G~s~~~v~~A~~~I~~iv~e~~~ 224 (515)
...+..+.||.++++.||||+|+++|+|+++|||+|+|+.... ...|+|+|. .++|++|+..|+.++.+.+.
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~-~e~v~~A~~~I~~~i~~~~~ 87 (92)
T 1x4n_A 13 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGT-PESVQSAKRLLDQIVEKGRS 87 (92)
T ss_dssp CCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEEC-HHHHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeC-HHHHHHHHHHHHHHHHhccc
Confidence 4578899999999999999999999999999999999998533 357999996 89999999999999998654
No 17
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.18 E-value=1.9e-11 Score=99.16 Aligned_cols=67 Identities=18% Similarity=0.321 Sum_probs=59.6
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC------CCcEEEEccChhHHHHHHHHHHHHHH
Q 010205 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK------EDSIIIEGNSTDSVAKASEKIQAIIA 220 (515)
Q Consensus 153 ~~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~------~~~I~I~G~s~~~v~~A~~~I~~iv~ 220 (515)
+.+..+.||.+++|.||||+|+++++|+++|||+|+|++.++ .+.|+|+|. ++++.+|+..|+.++.
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~ 74 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS-PAATQAAQYLISQRVT 74 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEES-HHHHHHHHHHHHHHCC
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeC-HHHHHHHHHHHHHHHh
Confidence 457789999999999999999999999999999999998532 357999996 8999999999998764
No 18
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.18 E-value=2.2e-11 Score=100.47 Aligned_cols=72 Identities=17% Similarity=0.308 Sum_probs=62.7
Q ss_pred CCCCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHHh
Q 010205 150 SAERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEA 222 (515)
Q Consensus 150 ~~~~~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~---~~~I~I~G~s~~~v~~A~~~I~~iv~e~ 222 (515)
-+.+.+..+.||.+++|.||||+|+++++|+++|||+|+|+.... .+.|+|+|. .++|++|+..|+.++.+.
T Consensus 2 ~g~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 2 LGSQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGS-AASISLAQYLINARLSSE 76 (82)
T ss_dssp CTTCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEEC-HHHHHHHHHHHHHHTC--
T ss_pred CCCcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHHhh
Confidence 456789999999999999999999999999999999999987422 457999996 599999999999998763
No 19
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.17 E-value=2.5e-11 Score=102.94 Aligned_cols=70 Identities=23% Similarity=0.378 Sum_probs=63.3
Q ss_pred CCCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-----CCcEEEEccChhHHHHHHHHHHHHHHH
Q 010205 151 AERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-----EDSIIIEGNSTDSVAKASEKIQAIIAE 221 (515)
Q Consensus 151 ~~~~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~-----~~~I~I~G~s~~~v~~A~~~I~~iv~e 221 (515)
..+.+..+.||.++++.||||+|+++|+|+++|||+|+|+..+. ...|+|+| ++++|++|++.|+.++.+
T Consensus 12 p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~i~~ 86 (94)
T 1x4m_A 12 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITG-DPYKVQQAKEMVLELIRD 86 (94)
T ss_dssp CCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEE-CTTTHHHHHHHHHHHHCC
T ss_pred CCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHHhc
Confidence 46789999999999999999999999999999999999997643 34699999 689999999999999876
No 20
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.17 E-value=2.8e-11 Score=97.97 Aligned_cols=69 Identities=25% Similarity=0.333 Sum_probs=61.9
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-CCcEEEEccChhHHHHHHHHHHHHHHH
Q 010205 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAIIAE 221 (515)
Q Consensus 152 ~~~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~-~~~I~I~G~s~~~v~~A~~~I~~iv~e 221 (515)
.+....+.||.+.+|.||||||+++|+|+++|||+|+|+..+. ...|+|+|. .+++.+|+..|..++.+
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G~-~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGP-TNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEEC-HHHHHHHHHHHHHHHHC
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEeC-HHHHHHHHHHHHHHHhc
Confidence 4678899999999999999999999999999999999998644 346999997 89999999999988764
No 21
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.16 E-value=2.9e-11 Score=101.45 Aligned_cols=72 Identities=21% Similarity=0.281 Sum_probs=64.3
Q ss_pred CCCCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHHh
Q 010205 150 SAERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEA 222 (515)
Q Consensus 150 ~~~~~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~---~~~I~I~G~s~~~v~~A~~~I~~iv~e~ 222 (515)
...+.+..+.||.++++.||||+|+++|+|+++|||+|+|+.... ++.|+|+|. +++|++|+..|+.++.+.
T Consensus 10 ~~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~-~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 10 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGT-QDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CCCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEE-HHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcC-HHHHHHHHHHHHHHHHhh
Confidence 355788999999999999999999999999999999999987422 467999997 899999999999999874
No 22
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.14 E-value=5.7e-11 Score=109.08 Aligned_cols=106 Identities=21% Similarity=0.215 Sum_probs=89.7
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-CCcEEEEccChhHHHHHHHHHHHHHHHhhhC-----
Q 010205 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAIIAEAVES----- 225 (515)
Q Consensus 152 ~~~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~-~~~I~I~G~s~~~v~~A~~~I~~iv~e~~~~----- 225 (515)
......+.||...+|.||||+|+++|+|+++|||+|+|+..+. ...|+|+|. .++|.+|+..|..++.+....
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~i~e~~~~~~~~~ 81 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGP-TNAIFKAFAMIIDKLEEDISSSMTNS 81 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECCTTTEEEEEEEEE-HHHHHHHHHHHHHHHHHHHTSCCCSS
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCCCCCceEEEEEeC-HHHHHHHHHHHHHHHHhhccccCCCC
Confidence 4577899999999999999999999999999999999998644 457999997 799999999999887663221
Q ss_pred ---CCCCceEEEEeccccchhhhccHHHHHHHHhcc
Q 010205 226 ---PSLDYSHFVSLPLAVHPELVDKLVNFQNTILGI 258 (515)
Q Consensus 226 ---~k~~~tHFIsIPl~~hp~I~~~~~~f~~~Il~~ 258 (515)
+..+.+..+.||-..+..|+|+.+..++.|.+.
T Consensus 82 ~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~ 117 (160)
T 2jzx_A 82 TAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRES 117 (160)
T ss_dssp SCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred ccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHH
Confidence 122457788899998999999999999999876
No 23
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.14 E-value=3.6e-11 Score=97.75 Aligned_cols=69 Identities=17% Similarity=0.334 Sum_probs=61.4
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHH
Q 010205 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAE 221 (515)
Q Consensus 152 ~~~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~---~~~I~I~G~s~~~v~~A~~~I~~iv~e 221 (515)
...+..+.||.+++|.||||+|+++++|+++|||+|+|+.... .+.|+|+|. +++|.+|+..|+.++.+
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGS-AASISLAQYLINVRLSS 74 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEEC-HHHHHHHHHHHHHHHTT
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeC-HHHHHHHHHHHHHHHHc
Confidence 3678899999999999999999999999999999999987432 467999996 89999999999988754
No 24
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.14 E-value=4.5e-11 Score=99.74 Aligned_cols=70 Identities=17% Similarity=0.294 Sum_probs=62.1
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC------CCcEEEEccChhHHHHHHHHHHHHHHHhh
Q 010205 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK------EDSIIIEGNSTDSVAKASEKIQAIIAEAV 223 (515)
Q Consensus 153 ~~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~------~~~I~I~G~s~~~v~~A~~~I~~iv~e~~ 223 (515)
+.+..+.||.+.+|.||||+|+++++|+++|||+|+|+..++ .+.|+|+|. .+++.+|+..|..++.+..
T Consensus 2 k~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~-~~~v~~A~~~I~~~i~~~~ 77 (87)
T 1ec6_A 2 KELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS-PAATQAAQYLISQRVTYEQ 77 (87)
T ss_dssp CSEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESS-HHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHhccc
Confidence 456789999999999999999999999999999999997532 357999996 8999999999999987743
No 25
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.11 E-value=8.1e-11 Score=101.54 Aligned_cols=69 Identities=25% Similarity=0.253 Sum_probs=61.4
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-----CCcEEEEccChhHHHHHHHHHHHHHHH
Q 010205 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-----EDSIIIEGNSTDSVAKASEKIQAIIAE 221 (515)
Q Consensus 152 ~~~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~-----~~~I~I~G~s~~~v~~A~~~I~~iv~e 221 (515)
......+.||.+++|.||||+|+++|+|+++|||+|+|+...+ ++.|+|+|. .+.|++|++.|+.++.+
T Consensus 13 ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~-~~~v~~A~~~I~~~i~e 86 (104)
T 1we8_A 13 TPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGT-QKEVAAAKHLILEKVSE 86 (104)
T ss_dssp CEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEE-HHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcC-HHHHHHHHHHHHHHHhh
Confidence 4567899999999999999999999999999999999997543 467999997 56899999999999876
No 26
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.11 E-value=1.9e-10 Score=105.87 Aligned_cols=105 Identities=18% Similarity=0.272 Sum_probs=87.2
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC----CCcEEEEccChhHHHHHHHHHHHHHHHhhh-CC-
Q 010205 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK----EDSIIIEGNSTDSVAKASEKIQAIIAEAVE-SP- 226 (515)
Q Consensus 153 ~~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~----~~~I~I~G~s~~~v~~A~~~I~~iv~e~~~-~~- 226 (515)
+-+..+.||.+.+|.||||+|+++|+|+++|||+|+|+..+. ...|+|+| +.+++.+|+..|..++.+... .|
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G-~~e~v~~A~~~I~~~~~e~~~~~~~ 80 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITG-PPEAQFKAQGRIYGKLKEENFFGPK 80 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEE-CHHHHHHHHHHHHHHHHHTTSSCSS
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHHhcccccccc
Confidence 446789999999999999999999999999999999998542 34599999 589999999999999887421 11
Q ss_pred -CCCceEEEEeccccchhhhccHHHHHHHHhcc
Q 010205 227 -SLDYSHFVSLPLAVHPELVDKLVNFQNTILGI 258 (515)
Q Consensus 227 -k~~~tHFIsIPl~~hp~I~~~~~~f~~~Il~~ 258 (515)
....+..+.||-..+..|+|+.+..++.|.+.
T Consensus 81 ~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~ 113 (163)
T 3krm_A 81 EEVKLETHIRVPASAAGRVIGKGGKTVNELQNL 113 (163)
T ss_dssp CCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHH
T ss_pred cCCceEEEEEcChhheeeEEcCCChHHHHHHHH
Confidence 12234567799999999999999999999875
No 27
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.09 E-value=1.4e-10 Score=100.65 Aligned_cols=71 Identities=21% Similarity=0.332 Sum_probs=61.3
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHHhhh
Q 010205 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 224 (515)
Q Consensus 153 ~~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~---~~~I~I~G~s~~~v~~A~~~I~~iv~e~~~ 224 (515)
..+..+.||.++++.||||+|+|+|+|+++|+|+|+|+.... +..|+|+|. +++|++|++.|+.++.+...
T Consensus 10 ~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~-~e~v~~A~~~I~~ii~~~~~ 83 (106)
T 2hh3_A 10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGP-PDRCEHAARIINDLLQSLRS 83 (106)
T ss_dssp --CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESS-HHHHHHHHHHHHHHHHHHC-
T ss_pred CeEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeC-HHHHHHHHHHHHHHHhcccc
Confidence 457899999999999999999999999999999999986443 236999996 89999999999999988554
No 28
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.07 E-value=2e-10 Score=107.05 Aligned_cols=105 Identities=18% Similarity=0.220 Sum_probs=86.7
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHHhhhCC---
Q 010205 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEAVESP--- 226 (515)
Q Consensus 153 ~~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~---~~~I~I~G~s~~~v~~A~~~I~~iv~e~~~~~--- 226 (515)
..+..+.||.+++|.||||+|+++|+|+++|||+|+|++... ...|+|+|. .++|.+|+..|..++.+.....
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~~~~~~~~~~~~ 80 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGP-PDRAQHAAEIITDLLRSVQAGNPGG 80 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEEC-HHHHHHHHHHHHHHHHHHC------
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeC-HHHHHHHHHHHHHHHHhcccCCCCC
Confidence 467899999999999999999999999999999999975322 346899997 7999999999999998743210
Q ss_pred --------------------CCCceEEEEeccccchhhhccHHHHHHHHhcc
Q 010205 227 --------------------SLDYSHFVSLPLAVHPELVDKLVNFQNTILGI 258 (515)
Q Consensus 227 --------------------k~~~tHFIsIPl~~hp~I~~~~~~f~~~Il~~ 258 (515)
....+..+.||-..+..|+|+.+..++.|.+.
T Consensus 81 ~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~ 132 (174)
T 1j4w_A 81 PGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQ 132 (174)
T ss_dssp -----------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHH
T ss_pred CCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHH
Confidence 00136677899998999999999999999876
No 29
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.07 E-value=1.1e-10 Score=121.41 Aligned_cols=66 Identities=18% Similarity=0.275 Sum_probs=60.6
Q ss_pred CCCeEEEEeccccccccccCCCc--hhHHHHHHHhCcEEEcCCCC--------CCCcEEEEccChhHHHHHHHHHHH
Q 010205 151 AERHSLSVEVGASVIRFIKGKEG--STQKKFEKEMGVKIILPSSK--------KEDSIIIEGNSTDSVAKASEKIQA 217 (515)
Q Consensus 151 ~~~~~~~v~Ip~~~~~~IIGk~G--~t~k~iE~eT~~~I~iP~~~--------~~~~I~I~G~s~~~v~~A~~~I~~ 217 (515)
.++++.+++||..+|++|||||| +++++|.+||||+|+||..+ .++.|+|+|. +++|++|+.+|+.
T Consensus 27 ~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~-~enVE~AR~~I~~ 102 (376)
T 3n89_A 27 PTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGY-FGDVDRARMLMRR 102 (376)
T ss_dssp TTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEE-HHHHHHHHHHHHH
T ss_pred CCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcC-HHHHHHHHHHHHh
Confidence 46899999999999999999999 99999999999999999876 2467999997 7999999999985
No 30
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.06 E-value=1.5e-10 Score=108.25 Aligned_cols=107 Identities=22% Similarity=0.240 Sum_probs=88.9
Q ss_pred CCCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC------CCcEEEEccChhHHHHHHHHHHHHHHHhhh
Q 010205 151 AERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK------EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 224 (515)
Q Consensus 151 ~~~~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~------~~~I~I~G~s~~~v~~A~~~I~~iv~e~~~ 224 (515)
.++++..+.||..++|.||||+|+++|+|+++|||+|+|+..++ ...|+|+|. .++|.+|+..|..++.+...
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~-~~~v~~A~~~I~~~~~~~~~ 81 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGT-IEALNAVHGFIAEKIREMPQ 81 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEEC-HHHHHHHHHHHHHHHTCCCC
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeC-HHHHHHHHHHHHHHHhccCC
Confidence 46789999999999999999999999999999999999987542 246899996 79999999999988865311
Q ss_pred C-----------------CCCCceEEEEeccccchhhhccHHHHHHHHhcc
Q 010205 225 S-----------------PSLDYSHFVSLPLAVHPELVDKLVNFQNTILGI 258 (515)
Q Consensus 225 ~-----------------~k~~~tHFIsIPl~~hp~I~~~~~~f~~~Il~~ 258 (515)
. +....+..+.||-..+..|+|+.+..++.|.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~ 132 (178)
T 2anr_A 82 NVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQ 132 (178)
T ss_dssp C-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred ccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHH
Confidence 0 001246778899998999999999999999876
No 31
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.04 E-value=2e-10 Score=105.44 Aligned_cols=104 Identities=20% Similarity=0.243 Sum_probs=85.3
Q ss_pred eEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-----CCcEEEEccChhHHHHHHHHHHHHHHHhhhCC--
Q 010205 154 HSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-----EDSIIIEGNSTDSVAKASEKIQAIIAEAVESP-- 226 (515)
Q Consensus 154 ~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~-----~~~I~I~G~s~~~v~~A~~~I~~iv~e~~~~~-- 226 (515)
.+..+.||..++|.||||+|+++|+|+++|||+|+|+..+. ...|+|+| +.++|.+|+..|..++.+....+
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~~ii~e~~~~~~~ 80 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIG-DPYKVQQACEMVMDILRERDQGGFG 80 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEE-CHHHHHHHHHHHHHHTTCSSSCCCS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHHHhccCCCCC
Confidence 46789999999999999999999999999999999976432 34689999 47999999999999987643110
Q ss_pred -------CCCceEEEEeccccchhhhccHHHHHHHHhcc
Q 010205 227 -------SLDYSHFVSLPLAVHPELVDKLVNFQNTILGI 258 (515)
Q Consensus 227 -------k~~~tHFIsIPl~~hp~I~~~~~~f~~~Il~~ 258 (515)
+...+..+.||...+..|+|+.+..++.|.++
T Consensus 81 ~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~ 119 (164)
T 2jvz_A 81 DRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQND 119 (164)
T ss_dssp SCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHH
T ss_pred CccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHH
Confidence 00124567799988999999999999999876
No 32
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.03 E-value=1.9e-10 Score=99.75 Aligned_cols=66 Identities=17% Similarity=0.294 Sum_probs=59.8
Q ss_pred EEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC------CCcEEEEccChhHHHHHHHHHHHHHHH
Q 010205 155 SLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK------EDSIIIEGNSTDSVAKASEKIQAIIAE 221 (515)
Q Consensus 155 ~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~------~~~I~I~G~s~~~v~~A~~~I~~iv~e 221 (515)
+..+.||.++++.||||+|+++|+|+++|||+|+|+.... ...|+|+| +.++|++|+..|+.++.+
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G-~~e~v~~A~~~I~~~i~e 79 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRG-SPQQIDHAKQLIEEKIEG 79 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEES-CHHHHHHHHHHHHHHSCS
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEEC-CHHHHHHHHHHHHHHHhc
Confidence 7799999999999999999999999999999999987642 25799999 689999999999988866
No 33
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.01 E-value=3.7e-10 Score=101.55 Aligned_cols=71 Identities=28% Similarity=0.417 Sum_probs=62.5
Q ss_pred CCCeEEEEecccc------ccccccCCCchhHHHHHHHhCcEEEcCCCC-------------------CCCcEEEEccCh
Q 010205 151 AERHSLSVEVGAS------VIRFIKGKEGSTQKKFEKEMGVKIILPSSK-------------------KEDSIIIEGNST 205 (515)
Q Consensus 151 ~~~~~~~v~Ip~~------~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~-------------------~~~~I~I~G~s~ 205 (515)
..+++..|.||.+ |+|.|||++|.|+|+||+||||+|.|...+ +...|.|+|.+.
T Consensus 4 ~~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~ 83 (131)
T 1k1g_A 4 ATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTM 83 (131)
T ss_dssp -CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSH
T ss_pred CceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCH
Confidence 4688999999988 888999999999999999999999996532 145799999999
Q ss_pred hHHHHHHHHHHHHHHH
Q 010205 206 DSVAKASEKIQAIIAE 221 (515)
Q Consensus 206 ~~v~~A~~~I~~iv~e 221 (515)
+.+++|++.|+.|+..
T Consensus 84 e~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 84 ENVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999865
No 34
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=98.90 E-value=2.5e-09 Score=98.34 Aligned_cols=72 Identities=22% Similarity=0.331 Sum_probs=63.7
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CC--cEEEEccChhHHHHHHHHHHHHHHHhhh
Q 010205 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---ED--SIIIEGNSTDSVAKASEKIQAIIAEAVE 224 (515)
Q Consensus 152 ~~~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~---~~--~I~I~G~s~~~v~~A~~~I~~iv~e~~~ 224 (515)
......+.||..++|.||||+|+++++|+++|||+|+||..+. .+ .|.|+| +.++|..|+..|+.+++++.+
T Consensus 83 ~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i~~~~~ 159 (163)
T 3krm_A 83 VKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIG-HFYASQMAQRKIRDILAQVKQ 159 (163)
T ss_dssp CCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEE-CHHHHHHHHHHHHHHHHHHTC
T ss_pred CceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHHHHHHH
Confidence 4567799999999999999999999999999999999997643 22 589999 589999999999999999765
No 35
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.86 E-value=3.4e-09 Score=93.74 Aligned_cols=70 Identities=19% Similarity=0.199 Sum_probs=59.1
Q ss_pred eEEEEecccc-------ccccccCCCchhHHHHHHHhCcEEEcCCCC-------------CCCcEEEEccChhHHHHHHH
Q 010205 154 HSLSVEVGAS-------VIRFIKGKEGSTQKKFEKEMGVKIILPSSK-------------KEDSIIIEGNSTDSVAKASE 213 (515)
Q Consensus 154 ~~~~v~Ip~~-------~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~-------------~~~~I~I~G~s~~~v~~A~~ 213 (515)
.+..|.||.+ +++.|||++|.|+|+|++||||+|.|-..+ +...|.|++.+.+.+++|++
T Consensus 12 ~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~~ 91 (119)
T 2yqr_A 12 VQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKK 91 (119)
T ss_dssp EEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHHH
T ss_pred EEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHHH
Confidence 4556777654 899999999999999999999999996332 23679999999999999999
Q ss_pred HHHHHHHHhh
Q 010205 214 KIQAIIAEAV 223 (515)
Q Consensus 214 ~I~~iv~e~~ 223 (515)
.|+.|+.+..
T Consensus 92 ~Ie~Ll~~v~ 101 (119)
T 2yqr_A 92 LCENLLQTVH 101 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhchH
Confidence 9999987743
No 36
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.85 E-value=1.4e-09 Score=91.70 Aligned_cols=67 Identities=25% Similarity=0.287 Sum_probs=59.9
Q ss_pred CCCCeEEEEeccccccccccCCCchhHHHHHHHhCcE-EEcCCCCCCCcEEEEccChhHHHHHHHHHHHH
Q 010205 150 SAERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVK-IILPSSKKEDSIIIEGNSTDSVAKASEKIQAI 218 (515)
Q Consensus 150 ~~~~~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~-I~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~i 218 (515)
....+...+.||++.+|.+||++|.++|+|.++||++ |+|.. +++.|.|.|.+.+++.+|++.|+.+
T Consensus 11 ~~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e--ddG~V~I~g~~~ea~~~A~~~I~~i 78 (91)
T 2cpq_A 11 LAAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE--DTGTFRIYGESADAVKKARGFLEFV 78 (91)
T ss_dssp SSCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET--TTTEEEEEESSHHHHHHHHHHHSCC
T ss_pred ccCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc--CCCEEEEEECCHHHHHHHHHHHHhh
Confidence 3567889999999999999999999999999999998 99953 3589999999999999999999643
No 37
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.83 E-value=2.2e-09 Score=98.44 Aligned_cols=68 Identities=22% Similarity=0.360 Sum_probs=61.2
Q ss_pred eEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHHh
Q 010205 154 HSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEA 222 (515)
Q Consensus 154 ~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~---~~~I~I~G~s~~~v~~A~~~I~~iv~e~ 222 (515)
.+..+.||..++|.||||+|+++|+|+++|||+|+|+.... .+.|+|+|. .++|..|+..|+.+++++
T Consensus 91 ~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~~ 161 (164)
T 2jvz_A 91 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGP-PDRCEHAARIINDLLQSL 161 (164)
T ss_dssp SSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEESC-HHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEcC-HHHHHHHHHHHHHHHhhh
Confidence 45788999999999999999999999999999999997644 357999996 899999999999999874
No 38
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=98.79 E-value=5.4e-09 Score=95.85 Aligned_cols=69 Identities=23% Similarity=0.336 Sum_probs=61.2
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCC---C-CCcEEEEccChhHHHHHHHHHHHHHHH
Q 010205 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSK---K-EDSIIIEGNSTDSVAKASEKIQAIIAE 221 (515)
Q Consensus 152 ~~~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~---~-~~~I~I~G~s~~~v~~A~~~I~~iv~e 221 (515)
......+.||.+++|.||||+|.++++|+++|||+|+|++.. . .+.|+|+| +.++|.+|+..|..++.|
T Consensus 87 ~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 87 PPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG-IPQSIIECVKQICVVMLE 159 (160)
T ss_dssp CSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEEEEEEEE-CHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHHhc
Confidence 457899999999999999999999999999999999998632 2 46799999 589999999999988765
No 39
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=98.71 E-value=9.6e-09 Score=95.87 Aligned_cols=69 Identities=25% Similarity=0.319 Sum_probs=61.0
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-----CCcEEEEccChhHHHHHHHHHHHHHHH
Q 010205 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-----EDSIIIEGNSTDSVAKASEKIQAIIAE 221 (515)
Q Consensus 152 ~~~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~-----~~~I~I~G~s~~~v~~A~~~I~~iv~e 221 (515)
...+..+.||.+++|.||||+|+++|+|+++|||+|+|+.... .+.|+|+|. .++|.+|+..|..++.+
T Consensus 102 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~e 175 (178)
T 2anr_A 102 RANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQNRVVTVSGE-PEQNRKAVELIIQKIQE 175 (178)
T ss_dssp GGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----CCEEEEEEESS-HHHHHHHHHHHHHHHHS
T ss_pred CceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHHh
Confidence 3468899999999999999999999999999999999987532 357999997 69999999999988875
No 40
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=98.68 E-value=1.1e-08 Score=95.14 Aligned_cols=65 Identities=22% Similarity=0.290 Sum_probs=57.2
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC------CCcEEEEccChhHHHHHHHHHHHH
Q 010205 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK------EDSIIIEGNSTDSVAKASEKIQAI 218 (515)
Q Consensus 153 ~~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~------~~~I~I~G~s~~~v~~A~~~I~~i 218 (515)
.....+.||..+++.||||+|+++|+|+++|||+|+|+.... ...|+|+| +.++|.+|+..|+.+
T Consensus 103 ~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~ 173 (174)
T 1j4w_A 103 LQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRG-TPQQIDYARQLIEEK 173 (174)
T ss_dssp -CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEEC-CHHHHHHHHHHHHHH
T ss_pred cEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEEEEC-CHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999999987531 35799999 589999999999865
No 41
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=98.67 E-value=1.6e-08 Score=105.21 Aligned_cols=69 Identities=20% Similarity=0.232 Sum_probs=57.5
Q ss_pred ccCCCCeEEEEeccccccccccCCCc--hhHHHHHHHhCcEEEcCCCCC-------CCcEEEEccChhHHHHHHHHHHH
Q 010205 148 VPSAERHSLSVEVGASVIRFIKGKEG--STQKKFEKEMGVKIILPSSKK-------EDSIIIEGNSTDSVAKASEKIQA 217 (515)
Q Consensus 148 ~~~~~~~~~~v~Ip~~~~~~IIGk~G--~t~k~iE~eT~~~I~iP~~~~-------~~~I~I~G~s~~~v~~A~~~I~~ 217 (515)
..+...++..+.|++.+|++|||++| .++++|+++|||+|+||..++ ...|+|+|. +++|..|+++|+.
T Consensus 180 ~~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItGs-~e~V~~Ark~I~~ 257 (376)
T 3n89_A 180 PAPENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVGN-IDNVLKARRYIMD 257 (376)
T ss_dssp CCCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEESC-HHHHHHHHHHHHH
T ss_pred cccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEeC-HHHHHHHHHHHHh
Confidence 44567799999999999999999999 566999999999999998654 246999995 8999999999973
No 42
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=98.55 E-value=5.2e-08 Score=88.68 Aligned_cols=65 Identities=17% Similarity=0.325 Sum_probs=57.5
Q ss_pred EEEeccccccccccCCCchhHHHHHHHhCc-EEEcCCCCCC------C--cEEEEccChhHHHHHHHHHHHHHHH
Q 010205 156 LSVEVGASVIRFIKGKEGSTQKKFEKEMGV-KIILPSSKKE------D--SIIIEGNSTDSVAKASEKIQAIIAE 221 (515)
Q Consensus 156 ~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~-~I~iP~~~~~------~--~I~I~G~s~~~v~~A~~~I~~iv~e 221 (515)
..+.||.+.++.+|||+|.|+|.|.+.||+ +|+|++.++. + .|+|+|. +++|+.|+..|+.++.+
T Consensus 69 ~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~-~~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 69 DVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGT-KDSIANATVLLDYHLNY 142 (144)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEE-HHHHHHHHHHHHHHHHT
T ss_pred EEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeC-HHHHHHHHHHHHHHHHh
Confidence 789999999999999999999999999996 9999875432 2 3789996 79999999999988865
No 43
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.51 E-value=9.5e-08 Score=86.67 Aligned_cols=65 Identities=22% Similarity=0.366 Sum_probs=50.7
Q ss_pred EEEEeccc------cccccccCCCchhHHHHHHHhCcEEEcCCCCC---------------------CCcEEEEccChh-
Q 010205 155 SLSVEVGA------SVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---------------------EDSIIIEGNSTD- 206 (515)
Q Consensus 155 ~~~v~Ip~------~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~---------------------~~~I~I~G~s~~- 206 (515)
+..|.||. .|+|.|||++|.|+|+||++|||+|.|-..|+ .-.|.|+|.+.+
T Consensus 3 ~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~ 82 (140)
T 2bl5_A 3 QEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQN 82 (140)
T ss_dssp EEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCH
T ss_pred eeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCchh
Confidence 34566663 56999999999999999999999999987663 016889997654
Q ss_pred ----HHHHHHHHHHHHH
Q 010205 207 ----SVAKASEKIQAII 219 (515)
Q Consensus 207 ----~v~~A~~~I~~iv 219 (515)
.+++|++.|+.++
T Consensus 83 ~~~~~l~~A~~~I~~lL 99 (140)
T 2bl5_A 83 RAELKLKRAVEEVKKLL 99 (140)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHC
Confidence 6778877776554
No 44
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.43 E-value=2.3e-07 Score=90.19 Aligned_cols=63 Identities=29% Similarity=0.327 Sum_probs=58.1
Q ss_pred EEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccC----hhHHHHHHHHHHHHH
Q 010205 155 SLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNS----TDSVAKASEKIQAII 219 (515)
Q Consensus 155 ~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G~s----~~~v~~A~~~I~~iv 219 (515)
...+.||+..++.|||++|.+++.|+++||++|+|+. +++.|.|.|.+ ++++++|++.|.+|+
T Consensus 35 i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~--~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~ 101 (219)
T 2e3u_A 35 EEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS--ETGEVWITSTKETEDPLAVWKARDIVLAIG 101 (219)
T ss_dssp EEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT--TTCEEEEEECTTCCSHHHHHHHHHHHHHHH
T ss_pred EEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc--CCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 4589999999999999999999999999999999985 36789999865 799999999999998
No 45
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=98.22 E-value=5.3e-07 Score=99.82 Aligned_cols=64 Identities=23% Similarity=0.233 Sum_probs=57.9
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHH
Q 010205 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAII 219 (515)
Q Consensus 153 ~~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~iv 219 (515)
-....++||++.+|.|||+||.++|+|+++|||+|+|- +++.|.|.|.+++.+++|++.|+.|+
T Consensus 566 p~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~---d~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 566 PVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV---DEETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp CEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEEC---SSSEEEEEESSHHHHHHHHHHTTC--
T ss_pred CeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEc---CCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 45788999999999999999999999999999999997 46899999999999999999998775
No 46
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=98.12 E-value=1.5e-06 Score=78.95 Aligned_cols=94 Identities=18% Similarity=0.217 Sum_probs=73.8
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHHhhhCCCCCce
Q 010205 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAEAVESPSLDYS 231 (515)
Q Consensus 152 ~~~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~iv~e~~~~~k~~~t 231 (515)
.+++.++.||...+|.+||++|+++++|++|+|+.|..++ .+...+++.|.+++.|.+|+..+. - .+
T Consensus 2 ~~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~-~~~~~~i~~~~~p~~v~~~~~~l~-------~-----~e 68 (144)
T 2qnd_A 2 SRFHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLD-EDTCTFHIYGEDQDAVKKARSFLE-------F-----AE 68 (144)
T ss_dssp --CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHC-------E-----EE
T ss_pred CceEEEEEECCcceeeEECCChhHHHHHHHHHCCeEeccC-CCchheeeccCCHHHHHHHHHhhh-------c-----ce
Confidence 4678899999999999999999999999999995544333 234568888878899988876321 1 13
Q ss_pred EEEEeccccchhhhccHHHHHHHHhcc
Q 010205 232 HFVSLPLAVHPELVDKLVNFQNTILGI 258 (515)
Q Consensus 232 HFIsIPl~~hp~I~~~~~~f~~~Il~~ 258 (515)
..|.+|-..+..++|+.+..++.+.+.
T Consensus 69 ~~v~Vp~~~~g~~IGK~G~nIr~i~~~ 95 (144)
T 2qnd_A 69 DVIQVPRNLVGKVIGKNGKLIQEIVDK 95 (144)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHHH
T ss_pred EEEEECHHHcCeeECCCCHHHHHHHHH
Confidence 667799988999999999999988765
No 47
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=97.89 E-value=1.3e-05 Score=77.79 Aligned_cols=53 Identities=23% Similarity=0.316 Sum_probs=48.3
Q ss_pred ccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHH
Q 010205 164 VIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAE 221 (515)
Q Consensus 164 ~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~iv~e 221 (515)
..|.||||+|+|++.||+.|||+|.|+. ..|.|.|. .++++.|++.|..++..
T Consensus 139 ~~GriIGk~G~tik~ie~~Tg~~I~v~~----~~v~i~G~-~~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 139 VRGRIIGRKGRTRQIIEEMSGASVSVYG----KTVAIIGN-PIQIEIAKTAIEKLARG 191 (219)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEET----TEEEEEEC-HHHHHHHHHHHHHHHTT
T ss_pred hhheeECCCchHHHHHHHHhCceEEECC----eEEEEEeC-HHHHHHHHHHHHHHHcC
Confidence 5788999999999999999999999974 57999996 79999999999999855
No 48
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=97.80 E-value=2.5e-05 Score=74.26 Aligned_cols=64 Identities=20% Similarity=0.321 Sum_probs=56.6
Q ss_pred EEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEc----cChhHHHHHHHHHHHHHH
Q 010205 155 SLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEG----NSTDSVAKASEKIQAIIA 220 (515)
Q Consensus 155 ~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G----~s~~~v~~A~~~I~~iv~ 220 (515)
...+.||+...+.|||++|++++.|++++|++|+|.. .++.|+|+. .++..+.+|++.|.+|+.
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~--~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~r 72 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT--ENSMVIVEPEAEGIPPVNLMKAAEVVKAISL 72 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET--TTTEEEEEESSTTSCHHHHHHHHHHHHHHHH
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc--CCCeEEEEeCCCCCCHHHHHHHHHHHHHHHc
Confidence 4689999999999999999999999999999999965 467788871 357999999999999985
No 49
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=97.56 E-value=4.2e-05 Score=72.76 Aligned_cols=54 Identities=17% Similarity=0.243 Sum_probs=48.6
Q ss_pred cccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHH
Q 010205 163 SVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAE 221 (515)
Q Consensus 163 ~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~iv~e 221 (515)
...|.||||+|.|++.||+-|||+|.|.. +.|.|.|. .++++.|+..|..++..
T Consensus 107 r~~GrIIGk~G~tik~iE~~Tg~~I~v~~----~~v~i~G~-~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 107 RIKGRIIGEGGRARRTIEEMTDTYINVGE----YEVAIIGD-YERAMAAKQAIEMLAEG 160 (191)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHTCEEEECS----SEEEEEEE-HHHHHHHHHHHHHHHTT
T ss_pred HHhhheeCCCccHHHHHHHHHCceEEEcC----CEEEEEeC-hHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999999975 48999996 79999999999988853
No 50
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.53 E-value=1.6e-05 Score=89.17 Aligned_cols=66 Identities=15% Similarity=0.272 Sum_probs=14.4
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHH
Q 010205 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAE 221 (515)
Q Consensus 153 ~~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~iv~e 221 (515)
--..++.||++.++-+||+||.++|+|.++||++|+|- +.+.|.|.+.+++.+++|+++|+.|..+
T Consensus 569 p~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~---ddG~v~I~~~~~~~~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 569 PKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIN---DDGVVKVSASDGAKIKAAIDWIKSITDE 634 (726)
T ss_dssp CC----------------------------------------------CCSCHHHHHHHHHC-------
T ss_pred CeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEE---CCceEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 34678999999999999999999999999999999996 4688999999999999999999988865
No 51
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=96.86 E-value=0.0018 Score=58.12 Aligned_cols=68 Identities=13% Similarity=0.107 Sum_probs=57.9
Q ss_pred EEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC--CCcEEEEccChhHHHHHHHHHHHHHHHhhh
Q 010205 156 LSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK--EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 224 (515)
Q Consensus 156 ~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~--~~~I~I~G~s~~~v~~A~~~I~~iv~e~~~ 224 (515)
..+.|...+.+.|+|++|+.|+.||.-++|.|++-+-+. ...|+|-|+ ...-.+|+..|+.+.+--++
T Consensus 58 lVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s~g~tEVtIfG~-~~~Q~rak~MI~sLA~~hr~ 127 (140)
T 3v69_A 58 KRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGPERRAEIWIFGP-PPFRRDVDRMLTDLAHYCRM 127 (140)
T ss_dssp EEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCTTSCEEEEEESC-HHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCCCCcEEEEEECC-HHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999987655 457999996 67778888888888765444
No 52
>2fsq_A ATU0111 protein; alpha-beta barrel, structural genomics, PSI, protein structu initiative, midwest center for structural genomics; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: d.61.1.4
Probab=96.71 E-value=0.0048 Score=60.65 Aligned_cols=168 Identities=11% Similarity=0.043 Sum_probs=97.7
Q ss_pred ceEEEEccCCcchhHHHhhhccccccccccccCCCCCCCCCCCCcccccCCCCceEEeeecccCC-------------hh
Q 010205 289 HKVAVELNIGDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLWN-------------KD 355 (515)
Q Consensus 289 ~FVAv~l~~~~~~~~v~~~q~~i~~~~~~~~~~r~~~~~~~Gl~~~~fv~p~~LHLTL~fLgL~~-------------ee 355 (515)
.+|+---...+...+|.++|+.+.- + ... +.=.|+||+.+|+||.=+.-.. +.
T Consensus 44 TvI~~l~~~s~~~~~l~~iq~~L~~-------~-----~~~--~~~~~lPpsS~HMTvfdgv~e~~r~~~~wP~~L~~d~ 109 (243)
T 2fsq_A 44 TVVCHLVEGSQTESAIVSTRQRFLD-------M-----PEA--SQLAFTPVSSLHMTVFQGVIESRRALPYWPQTLPLDT 109 (243)
T ss_dssp EEEEEBCTTSHHHHHHHHHHHHHHT-------S-----GGG--GGEEECCGGGCEEEEEEEEETTCCSTTSSCTTSCTTC
T ss_pred eEEEecCCCChHHHHHHHHHHHHHh-------c-----ccc--CceeeCCchhhhhhhccccccccccCCCCCccCcccc
Confidence 3444322233556888999988741 0 111 1236999999999997653321 33
Q ss_pred hHHHHHHHHHHhHHHhhhhcCCCCeEEEecccccCCCCCCCceEEEEeccccCchhHHHHHHHHHHHHHHHCCccccccC
Q 010205 356 RVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDY 435 (515)
Q Consensus 356 ei~~a~~aL~~i~~~i~~iL~~~pf~l~lkGLg~F~~dp~~~rVLyagV~~~~~~~~L~~L~~~L~~~f~~~Gl~~e~d~ 435 (515)
.++.+...+.+ .+...-...||.+.+.|+. +. -|..++..+ ....+|.++.+.|.+ ..||...+
T Consensus 110 ~l~~~~~~~~~---~l~~~~~~~p~~~~v~~l~--~~-----~v~L~Pade-~~~~~L~~~R~~l~q---~lGi~~p~-- 173 (243)
T 2fsq_A 110 PIDAVTDYYRD---RLSTFPTLPAFNMRVTGLR--PV-----GMVMKGATA-EDDSIVALWRDTFAD---FFGYRHPD-- 173 (243)
T ss_dssp CHHHHHHHHHH---HGGGCCCCCCCCEEEEEEE--TT-----EEEEEESSH-HHHHHHHHHHHHHHH---HHTCCCTT--
T ss_pred hHHHHHHHHHH---HHhcccCCCCeEEEEeccc--cc-----eEEEecCCH-HHHHHHHHHHHHHHH---HhCCCCCC--
Confidence 45555555443 2332222379999999993 32 566666654 335667666666666 46887643
Q ss_pred CCCcccccEEeeeecccccccCCCccccccHHHHHHHhCC---CccccEEecEEEEEeee
Q 010205 436 NKKLKQLHATLMNIRHKKRRKGTRRVDYFDARDIFKQFGS---KEWGEYLIKEAHLSQRF 492 (515)
Q Consensus 436 ~r~fk~PHiTLar~r~~~~~~g~~~~~~fda~~il~~~~d---~~fG~~~V~~I~Ls~l~ 492 (515)
...|+ +||||+-....... ...-....+++++.. ..++.+.+..+.+|.-.
T Consensus 174 hd~y~-fHITLgY~~~~l~~-----ee~~~~~~~l~~~~~~l~~~~p~i~l~~~efc~F~ 227 (243)
T 2fsq_A 174 HDTYE-FHITLSYIVSWFEP-----ECLPRWQAMLDEELEKLRVAAPVIQMRPPAFCEFK 227 (243)
T ss_dssp GGGCC-EEEECEEESSCBCG-----GGHHHHHHHHHHHHHHHHHHCSSCCBCCCEEEEES
T ss_pred CcceE-EEEEEEeccCCCCH-----HHHHHHHHHHHHHHHHHHhhCCeeeecCcceEEeC
Confidence 45899 99999987643211 000122233433332 12455688889998753
No 53
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=95.44 E-value=0.0025 Score=71.64 Aligned_cols=65 Identities=22% Similarity=0.387 Sum_probs=0.0
Q ss_pred eEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHH
Q 010205 154 HSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAE 221 (515)
Q Consensus 154 ~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~iv~e 221 (515)
-..++.||++.++-+||+||.+++.|.++||+.|+|-. .+.|.|.+.+.+.+.+|+++|+.+..+
T Consensus 560 ~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~---dg~v~I~~~~~~~~~~a~~~i~~i~~~ 624 (723)
T 3cdi_A 560 RIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED---DGTVKIAATDGEKAKHAIRRIEEITAE 624 (723)
T ss_dssp --------------------------------------------------------------------
T ss_pred eEEEEEECHHHhcccccccceeeeeeehhhCceEEecC---CccEEEecCCHHHHHHHHHHHHHHhhh
Confidence 35678899999999999999999999999999999874 578999998888889998888776543
No 54
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=95.11 E-value=0.0011 Score=74.79 Aligned_cols=62 Identities=16% Similarity=0.298 Sum_probs=23.7
Q ss_pred EEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHH
Q 010205 155 SLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAII 219 (515)
Q Consensus 155 ~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~iv 219 (515)
...+.||++.+|-+||++|.++|.|.++||+.|+|-. .+.|.|.+.+.....+|+++|+.+.
T Consensus 599 ~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~---dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 599 IITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED---DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp CCCC------------------CTTCCCCCSCC-----------CCCBSSHHHHCC---------
T ss_pred eEEEEEChHHeehcccccceeeehhhHhhCCEEEecC---CceEEEecCCHHHHHHHHHHHHHhc
Confidence 4568899999999999999999999999999999973 5789999988888888877776554
No 55
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=81.15 E-value=2.6 Score=40.70 Aligned_cols=63 Identities=25% Similarity=0.275 Sum_probs=53.6
Q ss_pred EEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHH
Q 010205 156 LSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAE 221 (515)
Q Consensus 156 ~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~iv~e 221 (515)
.-+.|+....+.++|++|..+..|.+.+++.|.+= .++-|.|.+.+...+..+..-|+.+-.+
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG---~NG~IWi~~~~~~~~~~~~~ai~~~e~~ 212 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVA---RNGRIHLECPNEDLEAIAVMAIKIIDEE 212 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEE---TTTEEEEECSCHHHHHHHHHHHHHHHHC
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEe---CCCEEEEecCCHHHHHHHHHHHHHHHhh
Confidence 56789999999999999999999999999999983 4789999998777777777777666544
No 56
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=75.55 E-value=3.3 Score=39.90 Aligned_cols=61 Identities=26% Similarity=0.376 Sum_probs=49.3
Q ss_pred EEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHH
Q 010205 156 LSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIA 220 (515)
Q Consensus 156 ~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~iv~ 220 (515)
.-+.++..+.+.++|++|..+..|.+.+++.|.+ |.++-|.|.+.+ .....+..-|+.+-.
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~v---G~NG~IWi~~~~-~~~~~~~~ai~~~e~ 198 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVV---GQNGLIWVNGDR-RKVSIAEEAIYLIEQ 198 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEE---CTTSEEEEESCH-HHHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEE---ECCcEEEEeCCc-hhHHHHHHHHHHHHh
Confidence 5678999999999999999999999999999998 458899999863 455555555655443
No 57
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=70.94 E-value=3.6 Score=38.12 Aligned_cols=58 Identities=9% Similarity=0.073 Sum_probs=47.7
Q ss_pred EEeccccccccccCCCch-hHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHH
Q 010205 157 SVEVGASVIRFIKGKEGS-TQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQA 217 (515)
Q Consensus 157 ~v~Ip~~~~~~IIGk~G~-t~k~iE~eT~~~I~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~ 217 (515)
-+.||..+.+.++|++|. .++.|.+++++.|.+= -+|-|.|.+.+...+..+..-|+.
T Consensus 94 l~~v~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG---~NG~IWi~~~~~~~~~~v~~aI~~ 152 (175)
T 2ja9_A 94 IIDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAIG---LNGKIWVKCEELSNTLACYRTIME 152 (175)
T ss_dssp EEECCHHHHHHHHHCTTCCHHHHHHTTCCCEEEEE---TTTEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEcHHHhhHHhcCCCcchHHhhhccCCeEEEEE---CCcEEEEecCCHHHHHHHHHHHHH
Confidence 688999999999999888 9999999999999984 478999999876555555555554
No 58
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=69.94 E-value=2.6 Score=38.02 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=33.1
Q ss_pred eEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCC
Q 010205 154 HSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPS 191 (515)
Q Consensus 154 ~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~ 191 (515)
-.+.+-|+....|..||++|+.++.|++++|-+|+|=.
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~ 73 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVE 73 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEE
Confidence 35567788888999999999999999999999998743
No 59
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=66.21 E-value=1.3 Score=39.94 Aligned_cols=38 Identities=13% Similarity=0.080 Sum_probs=34.8
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcC
Q 010205 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILP 190 (515)
Q Consensus 153 ~~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP 190 (515)
.....+.||.+-.+..|||+|.+.|-..+=||.+|+|-
T Consensus 102 ~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 102 VKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp EEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred cEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 46788999999999999999999999999999998874
No 60
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=60.08 E-value=0.11 Score=44.21 Aligned_cols=51 Identities=16% Similarity=0.081 Sum_probs=41.5
Q ss_pred EEccChhHHHHHHHHHHHHHHHhhhCCCCCceEEEEeccccchhhhccHHHHHHHHhcc
Q 010205 200 IEGNSTDSVAKASEKIQAIIAEAVESPSLDYSHFVSLPLAVHPELVDKLVNFQNTILGI 258 (515)
Q Consensus 200 I~G~s~~~v~~A~~~I~~iv~e~~~~~k~~~tHFIsIPl~~hp~I~~~~~~f~~~Il~~ 258 (515)
|+|+ +++|..|+..|..++.+ ..|.-|.||..+|.+|+|+.+..++.|.++
T Consensus 5 i~G~-~~~V~~A~~~i~~~~~~-------~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~ 55 (102)
T 2ctf_A 5 SSGE-PEKLGQALTEVYAKANS-------FTVSSVAAPSWLHRFIIGKKGQNLAKITQQ 55 (102)
T ss_dssp CCCC-CCCCCCSCCCCCCCCCC-------CEEEEEECCSTTHHHHHTTTTCHHHHHHHH
T ss_pred cCcC-HHHHHHHHHHHHHHhcC-------eEEEEEEeCHHHHhhhcCCCCccHHHHHHH
Confidence 5775 68888998888754432 257888899999999999999999999875
No 61
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=56.77 E-value=3.8 Score=40.99 Aligned_cols=59 Identities=14% Similarity=0.191 Sum_probs=48.1
Q ss_pred EEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHH
Q 010205 156 LSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQA 217 (515)
Q Consensus 156 ~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~ 217 (515)
.-++||..+.+.++|+++..++.|.+.+++.|.+= -++-|.|.+.+......+..-|+.
T Consensus 212 ~l~~Vs~~lvrrl~~~~~~~l~~L~~~~~~eI~vG---~NG~IWI~~~~~~~~~~i~~aI~~ 270 (289)
T 2nn6_G 212 LLFKVTLGLIRKLLAPDCEIIQEVGKLYPLEIVFG---MNGRIWVKAKTIQQTLILANILEA 270 (289)
T ss_dssp EEECCCHHHHHHHHCTTCSHHHHTTCSSSCCCEEE---TTTEEEECCSSHHHHHHHHHHHHH
T ss_pred EEEEEChHHhhhhhcCchhHHHHhcccCCeEEEEE---CCcEEEEecCChhHHHHHHHHHHH
Confidence 36889999999999999999999999999999873 478999999776555555555543
No 62
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=55.33 E-value=1.8 Score=42.34 Aligned_cols=58 Identities=17% Similarity=0.185 Sum_probs=40.5
Q ss_pred EEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHH
Q 010205 156 LSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQ 216 (515)
Q Consensus 156 ~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G~s~~~v~~A~~~I~ 216 (515)
.-+.++....+.++|++|..+..|.+.++|.|.+ |.++-|.|.+.+...+..+..-|+
T Consensus 157 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~v---G~NG~IWi~~~~~~~~~~~~~aI~ 214 (251)
T 2je6_I 157 IVIDIMPVKVPRVIGKNKSMYETLTSKSGCSIFV---ANNGRIWATCPSRFSEEILIEAIR 214 (251)
T ss_dssp CEEECCGGGHHHHHCGGGHHHHHHHTTC---CEE---CTTSEEEC-----CTTCCTHHHHT
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEE---ECCcEEEEeCCCHHHHHHHHHHHH
Confidence 4578999999999999999999999999999988 457899999865545555444444
No 63
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=51.38 E-value=8.9 Score=37.60 Aligned_cols=39 Identities=21% Similarity=0.245 Sum_probs=36.1
Q ss_pred eEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCC
Q 010205 154 HSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSS 192 (515)
Q Consensus 154 ~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~ 192 (515)
....+.||.+..+.-|||+|.+.|.--+=||.+|+|-+.
T Consensus 184 ~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 222 (251)
T 2asb_A 184 RAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 222 (251)
T ss_dssp TEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEES
T ss_pred cEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEH
Confidence 578999999999999999999999999999999999653
No 64
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=50.42 E-value=59 Score=31.74 Aligned_cols=74 Identities=14% Similarity=0.172 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHhHHHhhh---hcCCCCeEEEecccccCCCCCCCceEEEEeccccCchhHHHHHHHHHHHHHHHCCccc
Q 010205 355 DRVNAATNVLKSISSKVMD---ALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVF 431 (515)
Q Consensus 355 eei~~a~~aL~~i~~~i~~---iL~~~pf~l~lkGLg~F~~dp~~~rVLyagV~~~~~~~~L~~L~~~L~~~f~~~Gl~~ 431 (515)
.+++++.+.|+++.+.+.+ .+..+|..+.+.+++-.. =..+ +|+-+.+.+....-.++...|.++|.++|+..
T Consensus 192 ~d~~~v~~~l~~i~~~~~~~~~~~~~~~~~v~~~~~~~s~---i~~~-v~~~~~~~~~~~~~~~l~~~I~~~f~~~gI~i 267 (285)
T 3udc_A 192 EDVDKIIEGLQEICEEVKKSRDDLIEGPTVLGITDMQDSK---LVIM-VYAKTQPMQKWAVERDIRYRVKKMFDQKNISF 267 (285)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCSSBSSCCEEEEEEEEETTE---EEEE-EEEEESTTCHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHHHHHHHhcccccccCcccccccccCCCE---EEEE-EEEEECcchHHHHHHHHHHHHHHHHHHCCCcC
Confidence 4456666666665444332 223356666666655321 1112 34444433323334578889999999999976
Q ss_pred c
Q 010205 432 H 432 (515)
Q Consensus 432 e 432 (515)
.
T Consensus 268 p 268 (285)
T 3udc_A 268 P 268 (285)
T ss_dssp C
T ss_pred c
Confidence 3
No 65
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=48.28 E-value=8.7 Score=34.84 Aligned_cols=31 Identities=13% Similarity=0.175 Sum_probs=26.4
Q ss_pred eEEEEeccccccccccCCCchhHHHHHHHhC
Q 010205 154 HSLSVEVGASVIRFIKGKEGSTQKKFEKEMG 184 (515)
Q Consensus 154 ~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~ 184 (515)
..+.+.|-.+-.|.||||.|.|+..|+-=+.
T Consensus 33 ~~i~i~i~ged~glLIGK~G~TL~ALQyL~~ 63 (152)
T 2pt7_G 33 GVLLIDIDGEDSALLIGEKGYRYKALSYLLF 63 (152)
T ss_dssp TEEEEEEEEGGGTTTTCGGGHHHHHHHHHHH
T ss_pred CEEEEEEecCCcceEECCCCcchHHHHHHHH
Confidence 3567888899999999999999999987663
No 66
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=45.19 E-value=12 Score=38.67 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=36.6
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCC
Q 010205 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSS 192 (515)
Q Consensus 153 ~~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~ 192 (515)
.....+.||..-.+..|||+|.+.|-.-+=||.+|+|-+.
T Consensus 306 ~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 345 (366)
T 1k0r_A 306 ARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 345 (366)
T ss_dssp TTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEES
T ss_pred CcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEH
Confidence 4578899999999999999999999999999999999653
No 67
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=45.10 E-value=70 Score=31.26 Aligned_cols=90 Identities=13% Similarity=0.166 Sum_probs=54.4
Q ss_pred ceEEeeecccCChhhHHHHHHHHHHhHHHhhhhcCCCCeEEEecccccCCCCCCCceE-EEEeccccCchhHHHHHHHHH
Q 010205 342 FHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARI-LYAPVEEIGDGDRLLHACQVI 420 (515)
Q Consensus 342 LHLTL~fLgL~~eeei~~a~~aL~~i~~~i~~iL~~~pf~l~lkGLg~F~~dp~~~rV-LyagV~~~~~~~~L~~L~~~L 420 (515)
..+++.+ .-+.+++++.+.|.++.......+..++..+.+.+++-..= ..+| .|+.. .+....-.++...+
T Consensus 186 ~~~~v~v---~y~~d~~~v~~~l~~~~~~~~~vl~~p~p~v~v~~~~~~~i---~~~v~~~~~~--~~~~~~~~~l~~~i 257 (286)
T 2vv5_A 186 NEFIIGV---AYDSDIDQVKQILTNIIQSEDRILKDREMTVRLNELGASSI---NFVVRVWSNS--GDLQNVYWDVLERI 257 (286)
T ss_dssp EEEEEEE---CTTSCHHHHHHHHHHHHHHCTTBCTTSCEEEEEEEECSSSE---EEEEEEEEET--TTHHHHHHHHHHHH
T ss_pred EEEEEEE---cCCCCHHHHHHHHHHHHHhCcccccCCCCEEEEEEecCCeE---EEEEEEEEcc--chHHHHHHHHHHHH
Confidence 3455444 23456777888887765544445566777888888764321 1122 34443 22233445788889
Q ss_pred HHHHHHCCccccccCCCCcccccEEee
Q 010205 421 IDAFNEAGLVFHRDYNKKLKQLHATLM 447 (515)
Q Consensus 421 ~~~f~~~Gl~~e~d~~r~fk~PHiTLa 447 (515)
.++|.+.|+... | ||.++-
T Consensus 258 ~~~~~~~gI~ip------~--P~~~v~ 276 (286)
T 2vv5_A 258 KREFDAAGISFP------Y--PQMDVN 276 (286)
T ss_dssp HHHHHHHTCCCC------C--CEEEEE
T ss_pred HHHHHHCCCcCC------C--CceEEE
Confidence 999999999763 3 666664
No 68
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=44.99 E-value=12 Score=38.42 Aligned_cols=39 Identities=23% Similarity=0.251 Sum_probs=36.1
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCC
Q 010205 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPS 191 (515)
Q Consensus 153 ~~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~ 191 (515)
.....+.||....+.-|||+|.+.|.--+=||.+|+|-+
T Consensus 302 ~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s 340 (344)
T 1hh2_P 302 NKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 (344)
T ss_dssp TTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred CCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceee
Confidence 567899999999999999999999999999999999854
No 69
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=41.45 E-value=61 Score=28.26 Aligned_cols=63 Identities=11% Similarity=0.233 Sum_probs=42.5
Q ss_pred hhhHHHHHHHHHHhHHHhhhhcCCCCeEEEecccccCCCCCCCceEEEEeccccCchhHHHHHHHHHHHHHHHCCccc
Q 010205 354 KDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVF 431 (515)
Q Consensus 354 eeei~~a~~aL~~i~~~i~~iL~~~pf~l~lkGLg~F~~dp~~~rVLyagV~~~~~~~~L~~L~~~L~~~f~~~Gl~~ 431 (515)
.+-+..+.++|++.+ ...-..|.++|+..+-+ |.-+....+...++.+++.|.+.+.+.|+.+
T Consensus 4 ~~l~~~i~~al~dkK-------a~DI~vlDv~~~s~~~D--------yfVIatg~S~rqv~Aiad~v~~~lk~~g~~~ 66 (125)
T 2o5a_A 4 QELLQLAVNAVDDKK-------AEQVVALNMKGISLIAD--------FFLICHGNSEKQVQAIAHELKKVAQEQGIEI 66 (125)
T ss_dssp HHHHHHHHHHHHHTT-------CEEEEEEECBTTBC--C--------EEEEEEESSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHcC-------CCCeEEEEcCCCCcccC--------EEEEEEcCCHHHHHHHHHHHHHHHHHcCCcc
Confidence 344555666666542 22445788899988876 4444444456889999999999999998865
No 70
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=37.40 E-value=78 Score=27.78 Aligned_cols=61 Identities=13% Similarity=0.076 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHhHHHhhhhcCCCCeEEEecccccCCCCCCCceEEEEeccccCchhHHHHHHHHHHHHHHHCCccc
Q 010205 356 RVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVF 431 (515)
Q Consensus 356 ei~~a~~aL~~i~~~i~~iL~~~pf~l~lkGLg~F~~dp~~~rVLyagV~~~~~~~~L~~L~~~L~~~f~~~Gl~~ 431 (515)
-+..+.++|++.+ ...-..|.++|+..+-+ |.-|....+...++.+++.|.+.+.+.|+.+
T Consensus 6 l~~~i~~al~dkK-------a~DI~vlDv~~~s~~~D--------yfVIaTg~S~rqv~Aiad~v~~~lk~~g~~~ 66 (130)
T 2id1_A 6 ISKLAIEALEDIK-------GKDIIELDTSKLTSLFQ--------RMIVATGDSNRQVKALANSVQVKLKEAGVDI 66 (130)
T ss_dssp HHHHHHHHHHHTT-------CEEEEEEEGGGTCSSCS--------EEEEEECSSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHcC-------CCCeEEEEcCCCCcccC--------EEEEEEcCCHHHHHHHHHHHHHHHHHcCCcC
Confidence 3445555555432 22445788899998887 5545444456889999999999999999865
No 71
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=34.12 E-value=16 Score=30.27 Aligned_cols=30 Identities=10% Similarity=0.179 Sum_probs=21.8
Q ss_pred EEEEeccccccccccCCCchhHHHHHHHhC
Q 010205 155 SLSVEVGASVIRFIKGKEGSTQKKFEKEMG 184 (515)
Q Consensus 155 ~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~ 184 (515)
.+.|.|-..+-+.+||++|..+++|.++..
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~l~ 65 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAVVQ 65 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHHHH
Confidence 345566667789999999997777655443
No 72
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=32.98 E-value=20 Score=30.78 Aligned_cols=30 Identities=23% Similarity=0.399 Sum_probs=23.8
Q ss_pred CCcEEEEcc----ChhHHHHHHHHHHHHHHHhhh
Q 010205 195 EDSIIIEGN----STDSVAKASEKIQAIIAEAVE 224 (515)
Q Consensus 195 ~~~I~I~G~----s~~~v~~A~~~I~~iv~e~~~ 224 (515)
++.|+|+.. ...+.+.|.+++..++.++..
T Consensus 75 ~G~ivv~~q~~RSQ~~Nr~~Al~rL~~~l~~a~~ 108 (112)
T 1j26_A 75 AGELVLTSESSRYQFRNLAECLQKIRDMIAEASG 108 (112)
T ss_dssp SSEEEEEECCCSSHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCeEEEEECCccCHHHHHHHHHHHHHHHHHHhhc
Confidence 456888772 357899999999999998665
No 73
>2fsq_A ATU0111 protein; alpha-beta barrel, structural genomics, PSI, protein structu initiative, midwest center for structural genomics; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: d.61.1.4
Probab=32.30 E-value=72 Score=30.90 Aligned_cols=60 Identities=13% Similarity=0.163 Sum_probs=38.6
Q ss_pred CcchhHHHhhhccccccccccccCCCCCCCCCCCCcccccCCCCceEEeeeccc-CChhhHHHHHHHHHHhHHHhh
Q 010205 298 GDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKL-WNKDRVNAATNVLKSISSKVM 372 (515)
Q Consensus 298 ~~~~~~v~~~q~~i~~~~~~~~~~r~~~~~~~Gl~~~~fv~p~~LHLTL~fLgL-~~eeei~~a~~aL~~i~~~i~ 372 (515)
++..+++..+.+.|. ...|| ..-....-++||||+++.. .++++......+|+++.+.+.
T Consensus 150 e~~~~~L~~~R~~l~--------------q~lGi-~~p~hd~y~fHITLgY~~~~l~~ee~~~~~~~l~~~~~~l~ 210 (243)
T 2fsq_A 150 AEDDSIVALWRDTFA--------------DFFGY-RHPDHDTYEFHITLSYIVSWFEPECLPRWQAMLDEELEKLR 210 (243)
T ss_dssp HHHHHHHHHHHHHHH--------------HHHTC-CCTTGGGCCEEEECEEESSCBCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--------------HHhCC-CCCCCcceEEEEEEEeccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 344677887777762 12344 1123556789999999975 356666666777777766554
No 74
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114}
Probab=32.30 E-value=71 Score=28.33 Aligned_cols=92 Identities=8% Similarity=0.028 Sum_probs=54.3
Q ss_pred cccCCCCceEEeeecccCChhhHHHHHHHHHHhHHHhhhhcCCCCeEEEecccccCC----------CCCCCceEEEEec
Q 010205 335 IFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMR----------GSKDKARILYAPV 404 (515)
Q Consensus 335 ~fv~p~~LHLTL~fLgL~~eeei~~a~~aL~~i~~~i~~iL~~~pf~l~lkGLg~F~----------~dp~~~rVLyagV 404 (515)
+.|+|. -|++ -|.+.++++.......+..+...+.+.++...+.+-.-|-++|. +|+.-|..+|...
T Consensus 36 ~LV~pk-~Hv~--~l~dL~~e~~~~l~~~~~~va~al~~~~~~~~~Ni~~aGq~V~HlH~HvIPR~~~D~~~~~~vw~~~ 112 (149)
T 3i24_A 36 ILVPRI-EELK--EIHHMTDEQQIQFIKESSAVAQLLEDNFSPDKINIGALGNLVPQLHIHHIARFTTDVAWPGPVWGNT 112 (149)
T ss_dssp EEEESC-TTCS--SGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEECCSSCCSCCEEEEEECTTSTTTTSCSTTCS
T ss_pred EEEeCc-cccC--ChhHCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEhhhhCCCCEEEEEEeCCccCCCCCCcceecCC
Confidence 455443 3543 33455777777777777777777776665555666555544432 2344444445321
Q ss_pred c-ccCchhHHHHHHHHHHHHHHHCCc
Q 010205 405 E-EIGDGDRLLHACQVIIDAFNEAGL 429 (515)
Q Consensus 405 ~-~~~~~~~L~~L~~~L~~~f~~~Gl 429 (515)
. ..-..+.|.++++.|+++|...|.
T Consensus 113 ~~~~~~~eel~~~a~kIr~~L~~~~~ 138 (149)
T 3i24_A 113 TGVIRAQSSQTQLVDLLRDKLSNISG 138 (149)
T ss_dssp CCCBCCHHHHHHHHHHHHHHHTTSTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhccc
Confidence 1 112357899999999999976543
No 75
>3i0u_A Phosphothreonine lyase OSPF; APO-structure, type III effector, phospho lyase, secreted, virulence, structural genomics; 2.70A {Shigella flexneri}
Probab=31.46 E-value=2.1e+02 Score=26.87 Aligned_cols=79 Identities=11% Similarity=0.274 Sum_probs=49.5
Q ss_pred CCceEEeeecccCChhhHHHHHHHHHHhHHHhhhhcCCCCe-EEEecccccCCCCCCCce-------EEEEeccccCc--
Q 010205 340 KTFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPL-FIRLKGLDLMRGSKDKAR-------ILYAPVEEIGD-- 409 (515)
Q Consensus 340 ~~LHLTL~fLgL~~eeei~~a~~aL~~i~~~i~~iL~~~pf-~l~lkGLg~F~~dp~~~r-------VLyagV~~~~~-- 409 (515)
+++||.+. .+++..|.++|..+.- . ...|+ +-.+..+..-. ...| .||+++...+.
T Consensus 80 DK~HiSV~------~~qv~~AF~ai~~LL~--S---eDSPvDKWKVTDM~rv~---~qsRV~~GAQfTLY~Kpd~eds~Y 145 (218)
T 3i0u_A 80 DKFHISIA------REQVPLAFQILSGLLF--S---EDSPIDKWKITDMNRVS---QQSRVGIGAQFTLYVKSDQECSQY 145 (218)
T ss_dssp EEEEECBC------GGGHHHHHHHHHHHHT--C---TTCSCSEEEEECTTTCC-------CCSSCCEEEEEECCSSTTCC
T ss_pred ceEEEEec------HHHHHHHHHHHHHHhc--C---CCCCcceeeecccccCc---chhhhcccceEEEEecCccccccC
Confidence 67898764 5889999988887621 1 22333 33444443332 2234 49999865332
Q ss_pred ----hhHHHHHHHHHHHHHHHCCcccc
Q 010205 410 ----GDRLLHACQVIIDAFNEAGLVFH 432 (515)
Q Consensus 410 ----~~~L~~L~~~L~~~f~~~Gl~~e 432 (515)
..+...+...|+..|.++|+.+.
T Consensus 146 s~~~l~k~r~fi~~iE~~L~~agi~pg 172 (218)
T 3i0u_A 146 SALLLHKIRQFIMCLESNLLRSKIAPG 172 (218)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCBC
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 34566778889999999999974
No 76
>3ups_A Iojap-like protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; HET: MSE; 1.75A {Zymomonas mobilis subsp}
Probab=28.84 E-value=89 Score=27.63 Aligned_cols=63 Identities=14% Similarity=0.081 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHHHhHHHhhhhcCCCCeEEEecccccCCCCCCCceEEEEeccccCchhHHHHHHHHHHHHHHHCCccc
Q 010205 354 KDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVF 431 (515)
Q Consensus 354 eeei~~a~~aL~~i~~~i~~iL~~~pf~l~lkGLg~F~~dp~~~rVLyagV~~~~~~~~L~~L~~~L~~~f~~~Gl~~ 431 (515)
++-++.+.++|++.+ ...-..|.++|+..+-+ |.-|....+...++.+++.|.+.+.+.|+.+
T Consensus 20 ~~l~~~i~~al~dkK-------a~DI~vlDv~~~s~~~D--------yfVIatg~S~rqv~Aiad~v~~~lk~~g~~~ 82 (136)
T 3ups_A 20 EMLLKLVTDSLDDDQ-------ALEIATIPLAGKSSIAD--------YMVIASGRSSRQVTAMAQKLADRIKAATGYV 82 (136)
T ss_dssp HHHHHHHHHHHHHTT-------CEEEEEEECTTTCSSCS--------EEEEEECSSHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHcC-------CCCeEEEECCCCCcccC--------EEEEEEcCCHHHHHHHHHHHHHHHHHcCCcc
Confidence 344555666665532 22445788899988887 4445444456789999999999999888754
No 77
>1jh6_A Cyclic phosphodiesterase; ADP-ribose 1'',2''-cyclic phosphate, RNA processing, 2',3'-C nucleotide phosphodiesterase, hydrolase; 1.80A {Arabidopsis thaliana} SCOP: d.61.1.1 PDB: 1fsi_A 1jh7_A*
Probab=27.68 E-value=73 Score=28.85 Aligned_cols=42 Identities=14% Similarity=0.160 Sum_probs=26.5
Q ss_pred CCCCceEEEEeccccCchhHHHHHHHHHHHHHHHCCccccccCCCCcccccEEe
Q 010205 393 SKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKQLHATL 446 (515)
Q Consensus 393 dp~~~rVLyagV~~~~~~~~L~~L~~~L~~~f~~~Gl~~e~d~~r~fk~PHiTL 446 (515)
.+..-+-+|+-+ +.+-...|.++.+.+...+ |. .++. |||||
T Consensus 4 ~~~~~~~f~~~p-p~~~~~~l~~~~~~l~~~~---~~-------~~~~-~HiTL 45 (189)
T 1jh6_A 4 VKKDVYSVWALP-DEESEPRFKKLMEALRSEF---TG-------PRFV-PHVTV 45 (189)
T ss_dssp CCCEEEEEEEEE-CTTTHHHHHHHHHHHHHHH---TC-------CCCC-CCEEE
T ss_pred CCCCcEEEEEEC-CHHHHHHHHHHHHHHHHHc---CC-------CCCC-CEEEE
Confidence 345557788866 4344566777777765533 32 2466 99999
No 78
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=26.48 E-value=36 Score=33.41 Aligned_cols=37 Identities=24% Similarity=0.248 Sum_probs=26.6
Q ss_pred CeEEEEeccccc-cccccCCCchhHHH--------HHHHhCcEEEc
Q 010205 153 RHSLSVEVGASV-IRFIKGKEGSTQKK--------FEKEMGVKIIL 189 (515)
Q Consensus 153 ~~~~~v~Ip~~~-~~~IIGk~G~t~k~--------iE~eT~~~I~i 189 (515)
.....+.|.++- -+.||||+|+++|+ ||+-+|+++.+
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 456777788764 46689999999987 55556666655
No 79
>3bo6_A Hydrophilic protein, VIRA protein; alpha/beta fold of phosphothreonine lyase; 1.40A {Chromobacterium violaceum} PDB: 2z8n_A 2z8m_A 2z8o_A* 2z8p_A* 2q8y_A*
Probab=25.71 E-value=1.9e+02 Score=27.30 Aligned_cols=80 Identities=16% Similarity=0.292 Sum_probs=51.4
Q ss_pred CCCceEEeeecccCChhhHHHHHHHHHHhHHHhhhhcCCCCe-EEEecccccCCCCCCCce-------EEEEeccccCc-
Q 010205 339 PKTFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPL-FIRLKGLDLMRGSKDKAR-------ILYAPVEEIGD- 409 (515)
Q Consensus 339 p~~LHLTL~fLgL~~eeei~~a~~aL~~i~~~i~~iL~~~pf-~l~lkGLg~F~~dp~~~r-------VLyagV~~~~~- 409 (515)
-+++||.+. .+++..|-++|..+.- . ...|+ +-.+..+..-. ...| .||+++...+.
T Consensus 81 GDKfHiSV~------~~qv~~AF~al~~LL~--S---eDSPvDKWKVTDM~rv~---~qsRV~~GAQfTLY~Kpd~edsq 146 (220)
T 3bo6_A 81 GDKFHISVQ------REQVPQAFQALSGLLF--S---VDSPIDKWKVTDMERVD---QQSRVAVGAQFTLYVKPDQENSQ 146 (220)
T ss_dssp SEEEEECBC------GGGHHHHHHHHHHHHT--C---TTCSCSEEEEECTTTBC---TTSTTTSSCCEEEECCCSSTTSC
T ss_pred CceEEEEec------HHHHHHHHHHHHHhhc--C---CCCCcceeeeccccccc---hhhhhcccceEEEEecCcccccc
Confidence 478898764 5789999998887621 1 22333 34444443332 2223 49998865332
Q ss_pred -----hhHHHHHHHHHHHHHHHCCcccc
Q 010205 410 -----GDRLLHACQVIIDAFNEAGLVFH 432 (515)
Q Consensus 410 -----~~~L~~L~~~L~~~f~~~Gl~~e 432 (515)
..+...+...|+..|.++|+.+.
T Consensus 147 Ys~~~l~k~r~fi~~lE~~L~~aGi~pg 174 (220)
T 3bo6_A 147 YSASSLHNTRQFIECLESRLSESGLMPG 174 (220)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCCBC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 34556777889999999999864
No 80
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=24.21 E-value=4.2 Score=33.83 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=27.4
Q ss_pred ceEEEEeccccchhhhccHHHHHHHHhccc
Q 010205 230 YSHFVSLPLAVHPELVDKLVNFQNTILGIT 259 (515)
Q Consensus 230 ~tHFIsIPl~~hp~I~~~~~~f~~~Il~~~ 259 (515)
.++.+.||-.+|..|+|+.+..++.|.++.
T Consensus 17 vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eet 46 (95)
T 2ctj_A 17 AEVEVSIPAKLHNSLIGTKGRLIRSIMEEC 46 (95)
T ss_dssp CCEEEECCHHHHHHHHCSSSHHHHHHHHHH
T ss_pred EEEEEEECHHHHhhhCCCCchhHHHHHHHc
Confidence 688899999999999999999999998763
No 81
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Probab=22.16 E-value=2e+02 Score=24.77 Aligned_cols=89 Identities=6% Similarity=0.007 Sum_probs=52.1
Q ss_pred cccCCCCceEEeeecccCChhhHHHHHHHHHHhHHHhhhhcCCCCeEEEecccccCC----------CCCCCceEEEEe-
Q 010205 335 IFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMR----------GSKDKARILYAP- 403 (515)
Q Consensus 335 ~fv~p~~LHLTL~fLgL~~eeei~~a~~aL~~i~~~i~~iL~~~pf~l~lkGLg~F~----------~dp~~~rVLyag- 403 (515)
+.|+|. =|++ -|.+.++++.......+..+...+.+.++...+.+-.-|-.+|. +|+.-|..+|..
T Consensus 36 ~lV~~k-~h~~--~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~~aGq~V~HlH~HviPR~~~D~~~p~~vw~~~ 112 (137)
T 3ohe_A 36 ILVPRV-SGIR--EIYELPNEQQQRLLFESSALSEGMMELFGGDKMNVAALGNMVPQLHLHHIVRYQGDPAWPGPVWGKQ 112 (137)
T ss_dssp EEEESC-TTCC--SGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECCSSCCSCCEEEEEECTTSTTTTSCCTTSS
T ss_pred EEEecc-cccC--ChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeeccCcCCEEEEEEeCCCCCCCCCCcccccCC
Confidence 455543 3532 34456777777777777777777776665455555544433332 334444445532
Q ss_pred ccccCchhHHHHHHHHHHHHHHH
Q 010205 404 VEEIGDGDRLLHACQVIIDAFNE 426 (515)
Q Consensus 404 V~~~~~~~~L~~L~~~L~~~f~~ 426 (515)
....-..+.|.++++.|++.|.+
T Consensus 113 ~~~~~~~eel~~~~~~ir~~L~~ 135 (137)
T 3ohe_A 113 PPVPYTEEQQASVKAKLQPLLEQ 135 (137)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHh
Confidence 11112357899999999998875
No 82
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=21.40 E-value=25 Score=34.53 Aligned_cols=26 Identities=15% Similarity=0.173 Sum_probs=19.3
Q ss_pred EEEEecccccc-ccccCCCchhHHHHH
Q 010205 155 SLSVEVGASVI-RFIKGKEGSTQKKFE 180 (515)
Q Consensus 155 ~~~v~Ip~~~~-~~IIGk~G~t~k~iE 180 (515)
...+.|..+-| +.|||++|+++|+|.
T Consensus 231 ~~~i~ve~~~~k~iiig~~g~~lk~i~ 257 (301)
T 1wf3_A 231 KAILYVERPSQKAIVIGEGGRKIKEIG 257 (301)
T ss_dssp EEEEEESSHHHHHHHHCGGGHHHHHHH
T ss_pred EEEEEEeeCCceEEEEeCCchHHHHHH
Confidence 34556665444 689999999999874
No 83
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=21.38 E-value=1.2e+02 Score=26.94 Aligned_cols=56 Identities=20% Similarity=0.315 Sum_probs=39.5
Q ss_pred cCCCchhHHHHHHHhCcEEE-------cCCC-------------CCCCcEEEEcc----ChhHHHHHHHHHHHHHHHhhh
Q 010205 169 KGKEGSTQKKFEKEMGVKII-------LPSS-------------KKEDSIIIEGN----STDSVAKASEKIQAIIAEAVE 224 (515)
Q Consensus 169 IGk~G~t~k~iE~eT~~~I~-------iP~~-------------~~~~~I~I~G~----s~~~v~~A~~~I~~iv~e~~~ 224 (515)
=|+||-+.++. +|.++|. ||.. ..+|.|+|+.. ...+-+.|.+++..++.++..
T Consensus 23 sGpGGQnVNKv--~SaV~L~~~~~~s~lp~~~k~rL~~~~~~rit~~G~ivv~~q~~RSQ~~Nr~~A~~rL~~~l~~a~~ 100 (140)
T 4dh9_Y 23 QGAGGQHVNKT--STAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQELNREAALARLVAMIKELTT 100 (140)
T ss_dssp CSSSSHHHHTT--CCCEEEEECCSSSSSCSHHHHHHHSCCCTTSCSSCCCCEEECCCSSHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCccccc--cceEEEEEecccccCCHHHHHHHHHHhccccccCCcEEEEEcCCcCHHHHHHHHHHHHHHHHHHhcc
Confidence 48899888875 5667766 4530 01356788773 347899999999999999776
Q ss_pred CC
Q 010205 225 SP 226 (515)
Q Consensus 225 ~~ 226 (515)
.|
T Consensus 101 ~p 102 (140)
T 4dh9_Y 101 EK 102 (140)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 84
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=21.12 E-value=29 Score=33.37 Aligned_cols=37 Identities=14% Similarity=0.261 Sum_probs=30.4
Q ss_pred eEEEEeccccccccccCCCchhHHHHHHHhCcEEEcC
Q 010205 154 HSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILP 190 (515)
Q Consensus 154 ~~~~v~Ip~~~~~~IIGk~G~t~k~iE~eT~~~I~iP 190 (515)
-.+.+.|..+-.+.|||+.|.|+..|+.=|+.-++-.
T Consensus 92 ~~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn~~ 128 (225)
T 3gku_A 92 KEMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVNKS 128 (225)
T ss_dssp TEEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEcCCccceeecCCCeEhHHHHHHHHHHHHhc
Confidence 4567777788899999999999999999888666543
Done!