Query 010206
Match_columns 515
No_of_seqs 553 out of 1895
Neff 11.6
Searched_HMMs 46136
Date Thu Mar 28 22:17:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010206.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010206hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 4.5E-53 9.7E-58 355.8 30.1 327 28-513 108-478 (480)
2 KOG1354 Serine/threonine prote 100.0 3.4E-52 7.4E-57 346.0 24.3 429 10-515 5-433 (433)
3 KOG0272 U4/U6 small nuclear ri 100.0 2.2E-47 4.7E-52 325.6 22.5 284 30-468 170-456 (459)
4 KOG0271 Notchless-like WD40 re 100.0 5.2E-46 1.1E-50 313.2 27.1 297 16-468 141-477 (480)
5 KOG0318 WD40 repeat stress pro 100.0 3.2E-42 6.9E-47 302.1 39.4 431 30-515 54-559 (603)
6 COG5170 CDC55 Serine/threonine 100.0 1.1E-44 2.4E-49 297.6 18.7 439 15-515 6-459 (460)
7 KOG0272 U4/U6 small nuclear ri 100.0 8.3E-42 1.8E-46 291.6 24.1 279 112-515 175-459 (459)
8 KOG0319 WD40-repeat-containing 100.0 2.8E-40 6.1E-45 301.4 30.5 415 14-513 86-615 (775)
9 KOG0291 WD40-repeat-containing 100.0 1.9E-39 4.2E-44 296.4 35.6 385 31-515 141-549 (893)
10 KOG0286 G-protein beta subunit 100.0 5.4E-40 1.2E-44 267.5 28.2 293 93-468 48-341 (343)
11 KOG0279 G protein beta subunit 100.0 7.2E-38 1.6E-42 253.6 30.3 299 30-429 10-313 (315)
12 KOG0318 WD40 repeat stress pro 100.0 7.4E-37 1.6E-41 268.5 37.6 386 31-515 186-601 (603)
13 KOG0315 G-protein beta subunit 100.0 1.8E-37 4E-42 247.0 28.7 267 48-468 11-284 (311)
14 KOG0291 WD40-repeat-containing 100.0 6.6E-36 1.4E-40 273.4 38.5 403 30-515 184-611 (893)
15 KOG0286 G-protein beta subunit 100.0 7.2E-37 1.6E-41 249.3 28.5 287 30-427 50-343 (343)
16 KOG0273 Beta-transducin family 100.0 8.2E-37 1.8E-41 264.7 30.4 283 31-429 231-523 (524)
17 KOG0284 Polyadenylation factor 100.0 2.5E-38 5.4E-43 269.2 19.0 278 35-468 96-376 (464)
18 KOG0319 WD40-repeat-containing 100.0 2E-36 4.3E-41 276.3 31.3 382 31-514 58-575 (775)
19 KOG0279 G protein beta subunit 100.0 5.2E-36 1.1E-40 242.8 29.8 293 92-514 7-311 (315)
20 KOG0265 U5 snRNP-specific prot 100.0 2.5E-36 5.4E-41 247.1 27.8 286 31-468 43-334 (338)
21 KOG0273 Beta-transducin family 100.0 3.4E-36 7.5E-41 260.8 29.6 330 32-512 175-519 (524)
22 KOG0285 Pleiotropic regulator 100.0 9E-37 1.9E-41 255.4 24.2 283 31-471 147-438 (460)
23 KOG0295 WD40 repeat-containing 100.0 1E-36 2.2E-41 255.7 24.4 282 31-468 104-402 (406)
24 KOG0276 Vesicle coat complex C 100.0 2.8E-36 6.1E-41 270.1 28.3 282 32-468 10-295 (794)
25 KOG0315 G-protein beta subunit 100.0 2.6E-35 5.7E-40 234.7 27.3 271 31-450 35-308 (311)
26 KOG0306 WD40-repeat-containing 100.0 8.3E-35 1.8E-39 266.1 34.5 249 230-514 369-662 (888)
27 KOG0263 Transcription initiati 100.0 7E-36 1.5E-40 275.5 25.6 264 35-431 378-651 (707)
28 KOG0296 Angio-associated migra 100.0 1.2E-34 2.5E-39 243.6 28.5 332 29-468 58-394 (399)
29 KOG0263 Transcription initiati 100.0 5.3E-35 1.2E-39 269.7 26.0 265 113-468 379-645 (707)
30 KOG0284 Polyadenylation factor 100.0 7.4E-36 1.6E-40 254.2 18.6 240 230-513 134-377 (464)
31 KOG0266 WD40 repeat-containing 100.0 6.6E-34 1.4E-38 270.3 31.6 286 33-468 157-450 (456)
32 KOG0282 mRNA splicing factor [ 100.0 6.8E-35 1.5E-39 253.8 21.0 289 27-468 206-501 (503)
33 KOG0645 WD40 repeat protein [G 100.0 1E-32 2.3E-37 222.8 31.0 294 92-514 6-309 (312)
34 KOG0293 WD40 repeat-containing 100.0 6.8E-34 1.5E-38 242.6 25.4 284 32-468 221-509 (519)
35 KOG0285 Pleiotropic regulator 100.0 1.7E-33 3.8E-38 235.8 26.5 295 83-513 134-436 (460)
36 KOG0306 WD40-repeat-containing 100.0 1E-32 2.2E-37 252.6 33.3 386 13-514 44-578 (888)
37 KOG0645 WD40 repeat protein [G 100.0 2.8E-32 6E-37 220.3 31.0 287 31-468 10-307 (312)
38 KOG0295 WD40 repeat-containing 100.0 1E-33 2.3E-38 237.7 22.6 277 113-513 109-403 (406)
39 cd00200 WD40 WD40 domain, foun 100.0 4.7E-32 1E-36 246.9 34.4 280 32-468 6-287 (289)
40 KOG0316 Conserved WD40 repeat- 100.0 1.9E-32 4.1E-37 216.7 26.0 276 32-464 14-292 (307)
41 KOG0292 Vesicle coat complex C 100.0 1.6E-32 3.5E-37 255.5 30.0 295 34-468 8-318 (1202)
42 KOG0275 Conserved WD40 repeat- 100.0 1.7E-33 3.7E-38 233.0 19.2 293 32-468 210-505 (508)
43 KOG0278 Serine/threonine kinas 100.0 1.8E-33 3.9E-38 224.4 17.1 280 31-468 10-293 (334)
44 KOG0266 WD40 repeat-containing 100.0 6.5E-32 1.4E-36 256.7 30.2 282 113-514 160-452 (456)
45 PLN00181 protein SPA1-RELATED; 100.0 7.7E-31 1.7E-35 268.6 39.9 303 31-514 479-791 (793)
46 KOG0772 Uncharacterized conser 100.0 1.3E-32 2.9E-37 241.3 22.8 310 31-468 163-483 (641)
47 KOG0265 U5 snRNP-specific prot 100.0 5.2E-32 1.1E-36 221.9 24.3 278 164-512 47-334 (338)
48 KOG0316 Conserved WD40 repeat- 100.0 9.8E-32 2.1E-36 212.7 24.9 276 113-515 18-298 (307)
49 KOG0313 Microtubule binding pr 100.0 8.9E-32 1.9E-36 227.4 25.2 298 27-471 97-417 (423)
50 KOG0276 Vesicle coat complex C 100.0 8.6E-32 1.9E-36 241.5 25.7 278 113-514 14-296 (794)
51 KOG0643 Translation initiation 100.0 6.9E-31 1.5E-35 211.8 27.2 288 30-468 5-313 (327)
52 KOG0281 Beta-TrCP (transducin 100.0 2.6E-32 5.5E-37 228.1 17.3 269 33-468 195-473 (499)
53 cd00200 WD40 WD40 domain, foun 100.0 3.5E-30 7.6E-35 234.5 33.3 277 113-514 10-289 (289)
54 KOG0282 mRNA splicing factor [ 100.0 5.5E-32 1.2E-36 235.8 20.0 289 93-514 207-503 (503)
55 KOG0640 mRNA cleavage stimulat 100.0 2.8E-31 6E-36 218.6 23.0 310 32-468 109-422 (430)
56 KOG0283 WD40 repeat-containing 100.0 1.1E-30 2.4E-35 243.5 24.7 270 33-429 265-576 (712)
57 KOG1407 WD40 repeat protein [F 100.0 3E-30 6.5E-35 207.5 23.3 267 113-508 21-293 (313)
58 KOG0292 Vesicle coat complex C 100.0 1.7E-30 3.8E-35 242.1 24.4 293 113-514 10-319 (1202)
59 KOG1063 RNA polymerase II elon 100.0 1.6E-29 3.5E-34 229.7 29.9 422 30-514 186-697 (764)
60 KOG1407 WD40 repeat protein [F 100.0 1.2E-29 2.6E-34 204.0 25.5 278 30-464 15-294 (313)
61 KOG1446 Histone H3 (Lys4) meth 100.0 1.2E-28 2.6E-33 204.3 30.9 278 34-462 13-295 (311)
62 KOG0268 Sof1-like rRNA process 100.0 5.1E-31 1.1E-35 221.5 16.9 293 19-471 50-344 (433)
63 KOG0296 Angio-associated migra 100.0 3E-29 6.4E-34 211.2 26.9 335 94-513 58-395 (399)
64 KOG0281 Beta-TrCP (transducin 100.0 9E-31 1.9E-35 218.9 17.5 235 230-514 233-475 (499)
65 KOG0277 Peroxisomal targeting 100.0 4.1E-30 9E-35 205.8 20.4 280 39-468 12-305 (311)
66 KOG1539 WD repeat protein [Gen 100.0 8E-29 1.7E-33 229.8 31.8 380 38-514 162-646 (910)
67 KOG2106 Uncharacterized conser 100.0 2.4E-28 5.3E-33 214.1 33.0 384 25-513 94-517 (626)
68 KOG1408 WD40 repeat protein [F 100.0 5.8E-29 1.3E-33 226.8 29.7 449 33-514 76-624 (1080)
69 PTZ00421 coronin; Provisional 100.0 1.7E-28 3.8E-33 231.9 30.5 301 18-454 5-315 (493)
70 KOG0310 Conserved WD40 repeat- 100.0 7.1E-29 1.5E-33 216.8 24.3 281 31-468 22-305 (487)
71 KOG0277 Peroxisomal targeting 100.0 1.4E-28 3E-33 197.2 23.2 239 234-514 60-307 (311)
72 KOG0293 WD40 repeat-containing 100.0 7.9E-29 1.7E-33 211.8 22.7 282 111-514 223-511 (519)
73 KOG1063 RNA polymerase II elon 100.0 2.3E-27 5.1E-32 215.8 33.3 421 30-514 49-646 (764)
74 KOG0288 WD40 repeat protein Ti 100.0 1E-29 2.3E-34 217.2 17.0 283 31-468 171-457 (459)
75 KOG0973 Histone transcription 100.0 2.3E-28 5E-33 234.0 28.0 316 33-468 11-351 (942)
76 KOG0289 mRNA splicing factor [ 100.0 4.6E-28 9.9E-33 208.5 26.2 281 35-468 219-502 (506)
77 KOG0647 mRNA export protein (c 100.0 1.2E-27 2.5E-32 196.7 26.9 280 33-460 25-311 (347)
78 KOG0299 U3 snoRNP-associated p 100.0 6.6E-28 1.4E-32 209.2 26.5 299 31-460 138-443 (479)
79 KOG1408 WD40 repeat protein [F 100.0 7.7E-28 1.7E-32 219.6 27.4 368 38-515 327-712 (1080)
80 KOG0313 Microtubule binding pr 100.0 1.4E-27 3.1E-32 202.1 25.7 258 231-514 141-416 (423)
81 KOG0641 WD40 repeat protein [G 100.0 2.1E-26 4.6E-31 181.5 29.9 307 32-468 29-345 (350)
82 KOG0772 Uncharacterized conser 100.0 1.2E-27 2.6E-32 210.4 23.5 298 113-514 168-485 (641)
83 KOG0305 Anaphase promoting com 100.0 1.5E-27 3.2E-32 217.0 24.1 240 35-431 217-463 (484)
84 KOG0643 Translation initiation 100.0 3.5E-27 7.5E-32 190.6 23.2 288 95-510 5-310 (327)
85 KOG2106 Uncharacterized conser 100.0 1.4E-25 3E-30 197.0 34.9 375 32-514 197-624 (626)
86 KOG1446 Histone H3 (Lys4) meth 100.0 3.9E-26 8.6E-31 189.5 29.8 277 113-513 15-300 (311)
87 KOG0300 WD40 repeat-containing 100.0 3.2E-27 7E-32 195.4 21.7 315 30-467 143-471 (481)
88 PTZ00420 coronin; Provisional 100.0 5.7E-26 1.2E-30 215.7 32.7 241 230-500 70-319 (568)
89 KOG0308 Conserved WD40 repeat- 100.0 1.3E-27 2.8E-32 216.0 20.2 296 32-468 18-323 (735)
90 PLN00181 protein SPA1-RELATED; 100.0 3.3E-26 7.3E-31 234.5 33.4 259 32-428 529-792 (793)
91 PTZ00420 coronin; Provisional 100.0 5.2E-26 1.1E-30 215.9 32.1 258 53-455 50-319 (568)
92 KOG0283 WD40 repeat-containing 100.0 7.9E-27 1.7E-31 217.9 24.9 298 111-468 266-572 (712)
93 KOG0264 Nucleosome remodeling 100.0 7.5E-27 1.6E-31 202.7 22.8 270 31-430 120-405 (422)
94 KOG0305 Anaphase promoting com 100.0 1.8E-26 4E-31 209.9 26.2 270 38-468 180-457 (484)
95 KOG0275 Conserved WD40 repeat- 100.0 1.3E-27 2.8E-32 198.3 16.1 284 113-513 214-506 (508)
96 KOG0973 Histone transcription 100.0 2.2E-26 4.9E-31 220.5 26.5 253 230-513 65-352 (942)
97 KOG2048 WD40 repeat protein [G 100.0 5.2E-25 1.1E-29 200.3 33.1 372 35-514 25-409 (691)
98 KOG0274 Cdc4 and related F-box 100.0 4.3E-26 9.4E-31 215.8 26.4 269 33-468 206-478 (537)
99 KOG0299 U3 snoRNP-associated p 100.0 1E-25 2.2E-30 195.8 25.8 290 111-506 141-444 (479)
100 KOG1332 Vesicle coat complex C 100.0 1.8E-26 4E-31 184.0 19.1 247 230-514 7-284 (299)
101 KOG1036 Mitotic spindle checkp 100.0 4.2E-25 9E-30 182.5 27.6 278 34-462 12-294 (323)
102 PTZ00421 coronin; Provisional 99.9 3.9E-25 8.4E-30 209.2 31.2 235 230-498 71-314 (493)
103 KOG0289 mRNA splicing factor [ 99.9 1.1E-25 2.4E-30 193.9 24.7 241 230-512 257-501 (506)
104 KOG0650 WD40 repeat nucleolar 99.9 9.4E-26 2E-30 202.0 24.8 325 21-468 386-731 (733)
105 KOG4283 Transcription-coupled 99.9 2.1E-25 4.5E-30 182.9 24.6 315 31-468 39-361 (397)
106 KOG0268 Sof1-like rRNA process 99.9 7.6E-27 1.6E-31 196.6 16.5 284 92-515 58-344 (433)
107 KOG2919 Guanine nucleotide-bin 99.9 1.5E-25 3.3E-30 186.0 23.7 310 36-468 50-366 (406)
108 KOG2096 WD40 repeat protein [G 99.9 1.4E-25 3E-30 185.9 23.2 292 30-369 81-400 (420)
109 KOG0301 Phospholipase A2-activ 99.9 2.2E-25 4.7E-30 203.2 25.8 274 30-468 9-284 (745)
110 KOG0640 mRNA cleavage stimulat 99.9 1.4E-25 3.1E-30 185.1 22.4 302 113-514 113-424 (430)
111 KOG1332 Vesicle coat complex C 99.9 5E-26 1.1E-30 181.5 18.6 261 30-430 6-287 (299)
112 KOG0278 Serine/threonine kinas 99.9 5.4E-26 1.2E-30 181.9 18.4 236 230-514 55-295 (334)
113 KOG0288 WD40 repeat protein Ti 99.9 1.3E-26 2.7E-31 198.5 15.6 274 113-513 176-458 (459)
114 KOG0641 WD40 repeat protein [G 99.9 8.5E-24 1.8E-28 166.9 30.1 252 231-514 86-347 (350)
115 KOG2096 WD40 repeat protein [G 99.9 1E-24 2.3E-29 180.7 25.6 293 94-513 80-399 (420)
116 KOG0647 mRNA export protein (c 99.9 8.7E-25 1.9E-29 179.9 24.7 271 113-506 28-312 (347)
117 KOG0294 WD40 repeat-containing 99.9 8.3E-25 1.8E-29 181.1 24.3 253 13-431 27-283 (362)
118 KOG0274 Cdc4 and related F-box 99.9 4.6E-25 1E-29 208.8 25.4 252 16-434 232-487 (537)
119 KOG1539 WD repeat protein [Gen 99.9 3.6E-24 7.7E-29 199.3 30.5 354 30-468 197-644 (910)
120 KOG1036 Mitotic spindle checkp 99.9 2.7E-24 5.8E-29 177.8 26.2 267 113-507 14-294 (323)
121 KOG0264 Nucleosome remodeling 99.9 4E-25 8.8E-30 192.0 21.5 260 231-514 121-402 (422)
122 KOG0310 Conserved WD40 repeat- 99.9 1.1E-24 2.3E-29 190.9 23.5 242 34-431 67-311 (487)
123 KOG0308 Conserved WD40 repeat- 99.9 1.1E-25 2.3E-30 203.6 17.5 237 199-468 41-281 (735)
124 KOG2055 WD40 repeat protein [G 99.9 1.6E-24 3.5E-29 188.3 23.2 294 34-429 212-512 (514)
125 KOG0300 WD40 repeat-containing 99.9 1.1E-24 2.3E-29 180.6 20.7 297 90-514 138-474 (481)
126 KOG0269 WD40 repeat-containing 99.9 5.5E-25 1.2E-29 203.0 21.0 292 34-468 38-336 (839)
127 KOG0294 WD40 repeat-containing 99.9 1.2E-23 2.7E-28 174.2 26.3 270 49-468 3-277 (362)
128 KOG2048 WD40 repeat protein [G 99.9 1.8E-22 4E-27 183.9 35.9 414 13-514 91-546 (691)
129 KOG0639 Transducin-like enhanc 99.9 7.9E-25 1.7E-29 192.1 19.5 284 106-468 413-700 (705)
130 KOG0639 Transducin-like enhanc 99.9 1.1E-24 2.4E-29 191.3 19.5 288 30-428 414-703 (705)
131 KOG1274 WD40 repeat protein [G 99.9 3.5E-23 7.7E-28 194.9 29.0 274 32-457 10-285 (933)
132 KOG0301 Phospholipase A2-activ 99.9 1.5E-23 3.2E-28 191.3 25.0 280 88-514 2-286 (745)
133 KOG2055 WD40 repeat protein [G 99.9 4.6E-23 1E-27 179.4 25.2 281 112-514 213-510 (514)
134 KOG0269 WD40 repeat-containing 99.9 2E-24 4.4E-29 199.3 17.2 237 236-511 89-334 (839)
135 KOG4328 WD40 protein [Function 99.9 3.2E-23 6.9E-28 180.2 23.0 300 31-468 182-491 (498)
136 KOG1273 WD40 repeat protein [G 99.9 1.2E-22 2.5E-27 168.4 23.2 285 38-468 26-318 (405)
137 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 8.9E-22 1.9E-26 180.5 31.8 293 47-452 1-300 (300)
138 KOG0267 Microtubule severing p 99.9 6.6E-25 1.4E-29 200.9 10.5 235 231-510 25-261 (825)
139 KOG2445 Nuclear pore complex c 99.9 1E-22 2.2E-27 168.3 22.1 293 30-383 8-332 (361)
140 KOG0302 Ribosome Assembly prot 99.9 6.7E-23 1.4E-27 173.9 21.5 222 231-514 208-436 (440)
141 KOG0321 WD40 repeat-containing 99.9 1.5E-22 3.3E-27 183.0 24.9 307 33-468 45-387 (720)
142 KOG1445 Tumor-specific antigen 99.9 5E-22 1.1E-26 179.6 25.9 197 285-506 629-832 (1012)
143 KOG0646 WD40 repeat protein [G 99.9 1.1E-22 2.5E-27 177.3 20.1 233 33-382 79-317 (476)
144 KOG0302 Ribosome Assembly prot 99.9 3E-22 6.6E-27 169.9 21.7 268 30-426 146-435 (440)
145 KOG0267 Microtubule severing p 99.9 3E-24 6.4E-29 196.7 10.2 194 230-465 66-261 (825)
146 KOG4283 Transcription-coupled 99.9 6.8E-22 1.5E-26 162.4 22.5 308 113-514 44-363 (397)
147 KOG0650 WD40 repeat nucleolar 99.9 7.5E-22 1.6E-26 177.3 24.1 313 113-513 401-732 (733)
148 KOG2919 Guanine nucleotide-bin 99.9 8.4E-22 1.8E-26 163.9 22.5 287 176-511 54-364 (406)
149 KOG0646 WD40 repeat protein [G 99.9 7.8E-22 1.7E-26 172.1 23.3 231 234-500 81-332 (476)
150 KOG4378 Nuclear protein COP1 [ 99.9 1.1E-21 2.4E-26 172.3 23.8 263 113-454 35-305 (673)
151 KOG1009 Chromatin assembly com 99.9 4.8E-21 1E-25 164.4 21.8 260 230-511 61-366 (434)
152 KOG0307 Vesicle coat complex C 99.9 3.8E-22 8.2E-27 192.7 15.5 202 231-468 113-323 (1049)
153 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.2E-19 2.7E-24 166.3 31.6 268 127-469 2-276 (300)
154 KOG1963 WD40 repeat protein [G 99.9 1.5E-19 3.2E-24 170.3 31.6 412 39-515 20-537 (792)
155 KOG0321 WD40 repeat-containing 99.9 4.2E-21 9E-26 173.8 20.3 289 30-431 95-393 (720)
156 KOG1274 WD40 repeat protein [G 99.9 2.7E-20 5.8E-25 175.7 26.5 239 231-515 10-261 (933)
157 KOG1273 WD40 repeat protein [G 99.9 3.7E-20 8.1E-25 153.7 24.0 281 115-514 26-320 (405)
158 KOG1034 Transcriptional repres 99.9 6.3E-21 1.4E-25 159.1 19.4 318 32-468 35-379 (385)
159 KOG1009 Chromatin assembly com 99.9 2.8E-20 6.1E-25 159.7 22.6 335 34-468 12-368 (434)
160 KOG1188 WD40 repeat protein [G 99.9 1.6E-20 3.4E-25 157.7 20.2 286 48-468 41-342 (376)
161 KOG2445 Nuclear pore complex c 99.9 1.6E-19 3.5E-24 149.5 24.6 271 230-515 9-317 (361)
162 KOG4328 WD40 protein [Function 99.9 2.3E-20 4.9E-25 162.6 20.2 251 231-514 183-448 (498)
163 KOG4227 WD40 repeat protein [G 99.9 1.2E-19 2.7E-24 155.0 23.3 309 31-469 52-384 (609)
164 KOG1445 Tumor-specific antigen 99.9 2.4E-20 5.2E-25 168.9 19.9 147 343-506 628-783 (1012)
165 KOG1538 Uncharacterized conser 99.9 1.1E-19 2.3E-24 165.7 22.5 270 37-468 14-289 (1081)
166 KOG0290 Conserved WD40 repeat- 99.9 3.8E-19 8.2E-24 146.1 23.2 208 232-513 148-362 (364)
167 KOG0270 WD40 repeat-containing 99.9 7.3E-20 1.6E-24 158.9 19.5 269 37-435 175-455 (463)
168 KOG0307 Vesicle coat complex C 99.8 1.7E-20 3.7E-25 181.4 16.1 299 176-514 11-325 (1049)
169 KOG0322 G-protein beta subunit 99.8 2.6E-19 5.6E-24 145.1 18.7 300 33-428 12-322 (323)
170 KOG1034 Transcriptional repres 99.8 9.3E-20 2E-24 152.2 16.4 268 33-429 87-383 (385)
171 KOG0303 Actin-binding protein 99.8 9.5E-19 2.1E-23 149.8 21.8 298 17-453 9-320 (472)
172 KOG4378 Nuclear protein COP1 [ 99.8 2.6E-19 5.6E-24 157.6 18.6 220 39-411 83-305 (673)
173 KOG0270 WD40 repeat-containing 99.8 2.1E-18 4.6E-23 149.9 23.9 197 231-468 240-445 (463)
174 KOG1517 Guanine nucleotide bin 99.8 2.3E-18 5E-23 165.0 26.2 311 37-431 1066-1383(1387)
175 KOG1524 WD40 repeat-containing 99.8 7E-19 1.5E-23 156.4 21.1 205 248-513 78-282 (737)
176 KOG0649 WD40 repeat protein [G 99.8 1.7E-17 3.7E-22 133.0 25.1 262 36-429 11-274 (325)
177 KOG1007 WD repeat protein TSSC 99.8 2.6E-18 5.6E-23 141.2 20.7 257 230-513 59-357 (370)
178 KOG1007 WD repeat protein TSSC 99.8 4.6E-18 1E-22 139.7 20.9 203 232-468 121-357 (370)
179 KOG1524 WD40 repeat-containing 99.8 8.4E-18 1.8E-22 149.7 23.1 208 127-426 76-283 (737)
180 COG2319 FOG: WD40 repeat [Gene 99.8 1.5E-15 3.3E-20 147.1 40.9 368 31-514 61-440 (466)
181 KOG1587 Cytoplasmic dynein int 99.8 7.8E-18 1.7E-22 158.6 22.6 287 13-371 223-516 (555)
182 KOG4227 WD40 repeat protein [G 99.8 9.6E-18 2.1E-22 143.6 19.2 299 113-514 57-385 (609)
183 KOG0642 Cell-cycle nuclear pro 99.8 1.8E-18 4E-23 154.9 15.5 273 31-432 290-564 (577)
184 KOG0642 Cell-cycle nuclear pro 99.8 3.1E-18 6.7E-23 153.4 16.5 258 113-468 295-557 (577)
185 KOG0644 Uncharacterized conser 99.8 9E-19 1.9E-23 163.6 13.4 277 30-468 185-464 (1113)
186 KOG4497 Uncharacterized conser 99.8 7.5E-17 1.6E-21 135.1 23.0 354 40-512 13-427 (447)
187 KOG1538 Uncharacterized conser 99.8 3.2E-17 6.9E-22 149.8 21.4 230 230-511 49-287 (1081)
188 PRK11028 6-phosphogluconolacto 99.8 1.2E-15 2.6E-20 141.0 31.9 280 129-468 5-300 (330)
189 KOG1963 WD40 repeat protein [G 99.8 5.1E-16 1.1E-20 146.8 29.3 304 31-468 201-534 (792)
190 KOG1334 WD40 repeat protein [G 99.8 1.2E-17 2.7E-22 146.9 17.1 304 31-468 138-462 (559)
191 KOG1587 Cytoplasmic dynein int 99.8 6.8E-16 1.5E-20 145.6 27.6 260 113-468 243-512 (555)
192 KOG0303 Actin-binding protein 99.8 6.2E-17 1.3E-21 138.8 18.2 227 30-328 76-308 (472)
193 KOG2110 Uncharacterized conser 99.8 5.1E-15 1.1E-19 126.3 29.3 158 235-431 88-250 (391)
194 KOG1310 WD40 repeat protein [G 99.8 6E-17 1.3E-21 144.7 18.4 241 30-372 45-304 (758)
195 KOG0771 Prolactin regulatory e 99.8 5.1E-16 1.1E-20 134.8 23.1 193 287-512 148-350 (398)
196 KOG0322 G-protein beta subunit 99.8 1.1E-16 2.4E-21 130.0 17.7 291 113-468 15-319 (323)
197 PRK11028 6-phosphogluconolacto 99.7 1.9E-15 4.1E-20 139.7 27.8 274 199-514 6-302 (330)
198 KOG1240 Protein kinase contain 99.7 8.1E-16 1.8E-20 150.1 25.2 288 85-431 1033-1336(1431)
199 COG2319 FOG: WD40 repeat [Gene 99.7 1E-13 2.2E-18 134.3 37.6 321 113-514 66-398 (466)
200 KOG0771 Prolactin regulatory e 99.7 1.8E-16 3.8E-21 137.6 15.5 196 238-468 148-350 (398)
201 KOG1188 WD40 repeat protein [G 99.7 1.4E-15 2.9E-20 128.4 19.3 243 232-514 68-344 (376)
202 PRK01742 tolB translocation pr 99.7 9.6E-16 2.1E-20 146.0 21.1 169 239-453 252-426 (429)
203 KOG1517 Guanine nucleotide bin 99.7 1.8E-15 3.9E-20 145.6 22.3 295 115-469 1067-1378(1387)
204 KOG0290 Conserved WD40 repeat- 99.7 2.9E-15 6.3E-20 123.5 18.6 211 32-368 147-362 (364)
205 KOG2139 WD40 repeat protein [G 99.7 2.9E-14 6.3E-19 121.4 25.0 266 36-430 99-384 (445)
206 PRK01742 tolB translocation pr 99.7 2.2E-15 4.8E-20 143.5 20.8 231 204-499 183-427 (429)
207 KOG1240 Protein kinase contain 99.7 5.1E-15 1.1E-19 144.7 23.2 240 13-317 1030-1276(1431)
208 KOG1523 Actin-related protein 99.7 6.9E-15 1.5E-19 123.1 20.7 263 35-468 10-285 (361)
209 KOG4497 Uncharacterized conser 99.7 7.7E-15 1.7E-19 123.2 20.3 320 35-465 48-425 (447)
210 KOG2110 Uncharacterized conser 99.7 2.2E-13 4.8E-18 116.5 27.8 117 233-372 128-249 (391)
211 KOG1523 Actin-related protein 99.7 2.9E-14 6.4E-19 119.4 21.3 238 234-507 10-269 (361)
212 KOG0649 WD40 repeat protein [G 99.7 5.6E-14 1.2E-18 113.1 21.9 246 176-467 15-269 (325)
213 KOG0644 Uncharacterized conser 99.7 6.2E-16 1.3E-20 145.0 11.8 251 230-513 186-465 (1113)
214 KOG2139 WD40 repeat protein [G 99.6 4E-14 8.6E-19 120.5 20.4 244 235-508 99-366 (445)
215 KOG1272 WD40-repeat-containing 99.6 1.3E-15 2.9E-20 133.5 10.9 229 235-510 171-402 (545)
216 KOG1310 WD40 repeat protein [G 99.6 1.4E-14 3.1E-19 129.8 16.1 181 230-429 46-231 (758)
217 PRK03629 tolB translocation pr 99.6 1.4E-13 3E-18 130.8 23.4 216 232-498 196-428 (429)
218 KOG3881 Uncharacterized conser 99.6 1.9E-13 4.1E-18 117.7 19.9 224 246-500 115-344 (412)
219 PRK03629 tolB translocation pr 99.6 9.8E-13 2.1E-17 125.1 26.6 168 239-453 247-428 (429)
220 KOG2111 Uncharacterized conser 99.6 8.4E-12 1.8E-16 104.9 28.3 163 233-431 93-258 (346)
221 KOG1272 WD40-repeat-containing 99.6 4.2E-14 9.1E-19 124.3 13.8 298 5-421 91-401 (545)
222 PF02239 Cytochrom_D1: Cytochr 99.6 1.3E-12 2.8E-17 120.3 24.4 320 48-472 6-347 (369)
223 PF08662 eIF2A: Eukaryotic tra 99.6 2.3E-13 5E-18 113.5 17.1 148 238-429 9-179 (194)
224 KOG2321 WD40 repeat protein [G 99.6 1.5E-12 3.2E-17 117.8 22.8 164 233-431 174-345 (703)
225 PRK02889 tolB translocation pr 99.6 5.2E-13 1.1E-17 127.1 20.9 217 231-498 192-425 (427)
226 KOG2394 WD40 protein DMR-N9 [G 99.6 1.5E-13 3.3E-18 123.0 15.8 189 243-452 182-384 (636)
227 PRK04922 tolB translocation pr 99.6 1E-12 2.2E-17 125.6 22.6 215 231-497 200-432 (433)
228 KOG1334 WD40 repeat protein [G 99.5 1.3E-13 2.7E-18 122.1 14.2 296 113-514 143-464 (559)
229 PRK05137 tolB translocation pr 99.5 4E-12 8.7E-17 121.7 25.8 185 232-462 199-396 (435)
230 KOG2315 Predicted translation 99.5 5.5E-11 1.2E-15 107.7 29.8 312 35-468 34-380 (566)
231 PF02239 Cytochrom_D1: Cytochr 99.5 1E-11 2.2E-16 114.5 24.1 325 127-515 6-346 (369)
232 KOG2394 WD40 protein DMR-N9 [G 99.5 1.5E-12 3.3E-17 116.8 17.5 237 237-497 126-384 (636)
233 COG2706 3-carboxymuconate cycl 99.5 4.3E-10 9.4E-15 97.0 31.5 206 238-468 92-317 (346)
234 PRK04922 tolB translocation pr 99.5 6.4E-12 1.4E-16 120.1 22.9 168 238-452 251-432 (433)
235 PRK02889 tolB translocation pr 99.5 1.2E-11 2.7E-16 117.7 23.4 172 237-453 242-425 (427)
236 PRK05137 tolB translocation pr 99.5 5.4E-11 1.2E-15 114.0 27.3 151 236-431 247-414 (435)
237 PF08662 eIF2A: Eukaryotic tra 99.5 6.3E-12 1.4E-16 105.0 17.7 98 343-462 60-163 (194)
238 PF10282 Lactonase: Lactonase, 99.5 7E-10 1.5E-14 102.6 32.8 291 129-468 2-318 (345)
239 KOG3881 Uncharacterized conser 99.5 8.2E-12 1.8E-16 107.8 17.8 265 31-378 51-326 (412)
240 TIGR02800 propeller_TolB tol-p 99.4 1.5E-11 3.4E-16 118.0 21.6 185 233-464 188-386 (417)
241 KOG2111 Uncharacterized conser 99.4 6.4E-11 1.4E-15 99.7 21.7 235 236-514 7-254 (346)
242 COG2706 3-carboxymuconate cycl 99.4 1.9E-09 4.1E-14 93.1 30.9 288 16-431 20-323 (346)
243 KOG2321 WD40 repeat protein [G 99.4 3.7E-11 8E-16 108.9 21.4 290 106-468 45-339 (703)
244 PF10282 Lactonase: Lactonase, 99.4 1.8E-09 3.9E-14 99.9 32.4 273 34-372 35-323 (345)
245 COG5354 Uncharacterized protei 99.4 2.1E-10 4.5E-15 102.8 24.2 142 281-468 272-425 (561)
246 KOG1354 Serine/threonine prote 99.4 2.4E-11 5.2E-16 103.2 16.7 222 235-470 85-357 (433)
247 KOG2314 Translation initiation 99.4 8E-11 1.7E-15 106.4 20.7 314 38-468 213-563 (698)
248 KOG2041 WD40 repeat protein [G 99.4 1.7E-10 3.8E-15 107.4 21.6 303 32-468 11-333 (1189)
249 KOG0974 WD-repeat protein WDR6 99.4 4.5E-11 9.7E-16 116.0 18.2 148 242-431 141-290 (967)
250 PRK04792 tolB translocation pr 99.3 7.8E-10 1.7E-14 105.8 25.5 167 239-452 266-446 (448)
251 PRK04792 tolB translocation pr 99.3 1.8E-10 3.9E-15 110.1 21.0 214 232-498 215-447 (448)
252 PRK00178 tolB translocation pr 99.3 4.4E-10 9.6E-15 108.0 22.5 215 231-498 195-428 (430)
253 PF04762 IKI3: IKI3 family; I 99.3 9.6E-08 2.1E-12 98.3 38.4 354 34-463 74-507 (928)
254 PRK00178 tolB translocation pr 99.3 1.9E-09 4.2E-14 103.6 24.8 168 238-452 246-427 (430)
255 TIGR02800 propeller_TolB tol-p 99.3 7.7E-10 1.7E-14 106.3 22.0 203 254-507 169-384 (417)
256 KOG0280 Uncharacterized conser 99.3 1.2E-09 2.6E-14 91.1 19.5 210 113-372 70-285 (339)
257 PRK01029 tolB translocation pr 99.2 2.5E-09 5.4E-14 101.5 22.2 221 233-499 183-426 (428)
258 KOG4547 WD40 repeat-containing 99.2 2.2E-09 4.7E-14 98.3 20.5 180 244-461 3-208 (541)
259 KOG4547 WD40 repeat-containing 99.2 2.2E-09 4.7E-14 98.3 19.6 207 125-430 4-221 (541)
260 PF04762 IKI3: IKI3 family; I 99.2 5.2E-07 1.1E-11 93.0 38.5 387 35-468 120-560 (928)
261 KOG0280 Uncharacterized conser 99.2 1.6E-09 3.5E-14 90.4 16.5 158 237-431 124-286 (339)
262 KOG2315 Predicted translation 99.2 4.1E-09 9E-14 95.8 20.3 128 255-429 251-390 (566)
263 KOG1409 Uncharacterized conser 99.2 2.1E-09 4.5E-14 91.7 17.2 206 34-317 67-273 (404)
264 KOG0974 WD-repeat protein WDR6 99.2 1.4E-09 3E-14 106.0 18.2 184 297-514 100-286 (967)
265 PRK01029 tolB translocation pr 99.2 1.2E-08 2.6E-13 96.9 23.6 204 256-506 166-389 (428)
266 COG4946 Uncharacterized protei 99.2 3.8E-07 8.2E-12 81.7 30.4 223 241-506 273-507 (668)
267 KOG1409 Uncharacterized conser 99.2 4E-09 8.7E-14 90.0 17.1 195 235-468 69-266 (404)
268 KOG2041 WD40 repeat protein [G 99.1 1.6E-09 3.5E-14 101.2 15.2 236 234-506 14-277 (1189)
269 KOG0309 Conserved WD40 repeat- 99.1 6.4E-10 1.4E-14 104.1 12.6 290 32-468 21-335 (1081)
270 COG4946 Uncharacterized protei 99.1 4.6E-07 1E-11 81.1 29.6 144 232-418 357-507 (668)
271 COG5170 CDC55 Serine/threonine 99.1 1.3E-09 2.8E-14 91.6 13.0 223 235-468 86-363 (460)
272 TIGR02658 TTQ_MADH_Hv methylam 99.1 5E-07 1.1E-11 81.6 30.2 249 123-432 54-333 (352)
273 KOG1064 RAVE (regulator of V-A 99.1 9.7E-10 2.1E-14 112.6 14.2 202 30-383 2203-2409(2439)
274 KOG2314 Translation initiation 99.1 1.1E-07 2.4E-12 86.6 25.6 288 36-429 250-573 (698)
275 KOG1912 WD40 repeat protein [G 99.1 3.2E-08 7E-13 93.6 22.4 407 33-507 53-541 (1062)
276 KOG4532 WD40-like repeat conta 99.1 3.1E-08 6.6E-13 81.8 18.0 254 39-371 71-331 (344)
277 TIGR02658 TTQ_MADH_Hv methylam 99.0 5.3E-07 1.1E-11 81.5 26.4 255 43-380 53-338 (352)
278 PLN02919 haloacid dehalogenase 99.0 4.7E-07 1E-11 95.1 30.0 188 237-432 685-891 (1057)
279 COG5354 Uncharacterized protei 99.0 1E-07 2.2E-12 86.0 21.0 306 36-421 72-421 (561)
280 PLN02919 haloacid dehalogenase 99.0 1.4E-06 3E-11 91.7 31.5 227 235-469 624-885 (1057)
281 KOG4190 Uncharacterized conser 99.0 7.3E-09 1.6E-13 94.0 11.8 243 231-509 781-1028(1034)
282 PRK04043 tolB translocation pr 99.0 1.5E-07 3.2E-12 88.8 20.9 180 236-463 189-388 (419)
283 PF15492 Nbas_N: Neuroblastoma 98.9 7.6E-07 1.6E-11 75.0 22.0 186 232-431 41-261 (282)
284 TIGR03300 assembly_YfgL outer 98.9 7E-07 1.5E-11 84.4 24.1 301 46-468 64-375 (377)
285 KOG0309 Conserved WD40 repeat- 98.9 2.1E-08 4.5E-13 94.3 12.4 184 236-455 69-258 (1081)
286 KOG3914 WD repeat protein WDR4 98.9 3.9E-08 8.4E-13 86.0 13.2 159 237-434 65-228 (390)
287 KOG1064 RAVE (regulator of V-A 98.9 4.8E-08 1E-12 100.7 15.7 185 231-468 2205-2394(2439)
288 KOG4532 WD40-like repeat conta 98.9 6.6E-07 1.4E-11 74.1 18.8 232 245-514 83-329 (344)
289 PRK04043 tolB translocation pr 98.9 1.2E-06 2.6E-11 82.7 23.5 177 285-506 189-386 (419)
290 KOG4190 Uncharacterized conser 98.9 2.2E-08 4.7E-13 91.0 10.9 294 30-468 730-1032(1034)
291 KOG0882 Cyclophilin-related pe 98.9 2.1E-07 4.6E-12 82.7 16.6 327 32-426 6-369 (558)
292 PF08450 SGL: SMP-30/Gluconola 98.8 2.8E-05 6.1E-10 68.6 27.5 146 235-416 86-242 (246)
293 TIGR03300 assembly_YfgL outer 98.7 1E-05 2.2E-10 76.6 25.3 267 126-469 65-335 (377)
294 KOG2695 WD40 repeat protein [G 98.7 5.4E-08 1.2E-12 83.4 8.4 154 248-439 227-385 (425)
295 PF15492 Nbas_N: Neuroblastoma 98.7 3.8E-05 8.2E-10 65.0 24.9 154 240-419 3-167 (282)
296 KOG4714 Nucleoporin [Nuclear s 98.7 6.8E-07 1.5E-11 73.8 14.2 142 199-371 105-254 (319)
297 PF08450 SGL: SMP-30/Gluconola 98.7 6.7E-05 1.4E-09 66.2 27.8 184 237-458 42-241 (246)
298 KOG1912 WD40 repeat protein [G 98.7 5.1E-06 1.1E-10 79.3 20.7 258 34-430 14-305 (1062)
299 KOG4714 Nucleoporin [Nuclear s 98.7 6.9E-07 1.5E-11 73.7 13.1 74 235-315 180-255 (319)
300 KOG1832 HIV-1 Vpr-binding prot 98.6 6E-08 1.3E-12 93.2 6.1 218 32-416 1098-1318(1516)
301 PF07433 DUF1513: Protein of u 98.6 6.2E-05 1.3E-09 65.8 23.7 60 341-419 215-276 (305)
302 KOG0882 Cyclophilin-related pe 98.6 2.7E-06 5.8E-11 75.9 14.7 246 231-514 50-303 (558)
303 PF00400 WD40: WD domain, G-be 98.5 1.9E-07 4.1E-12 55.2 4.8 33 31-63 7-39 (39)
304 PF07433 DUF1513: Protein of u 98.5 0.00012 2.6E-09 64.0 23.4 191 241-468 57-282 (305)
305 KOG3914 WD repeat protein WDR4 98.5 2.9E-06 6.2E-11 74.7 13.3 150 345-514 65-221 (390)
306 KOG2695 WD40 repeat protein [G 98.5 5.4E-07 1.2E-11 77.4 8.2 162 119-321 218-383 (425)
307 KOG1920 IkappaB kinase complex 98.4 5E-05 1.1E-09 76.6 21.5 240 234-514 68-320 (1265)
308 PF00400 WD40: WD domain, G-be 98.4 6.8E-07 1.5E-11 52.8 5.4 34 278-312 6-39 (39)
309 PF13360 PQQ_2: PQQ-like domai 98.4 0.00012 2.7E-09 64.2 21.6 153 249-432 80-233 (238)
310 KOG2066 Vacuolar assembly/sort 98.4 1.5E-05 3.3E-10 76.5 15.4 192 32-371 36-233 (846)
311 KOG1832 HIV-1 Vpr-binding prot 98.4 6.1E-07 1.3E-11 86.6 5.7 191 111-431 1100-1293(1516)
312 KOG1920 IkappaB kinase complex 98.3 0.0011 2.5E-08 67.3 27.6 222 36-318 69-326 (1265)
313 KOG2114 Vacuolar assembly/sort 98.3 0.00032 6.8E-09 68.4 22.9 125 234-381 125-252 (933)
314 PRK02888 nitrous-oxide reducta 98.3 0.0014 3E-08 63.3 26.4 107 344-462 322-451 (635)
315 PF08596 Lgl_C: Lethal giant l 98.3 0.00029 6.3E-09 65.7 21.3 281 37-371 3-335 (395)
316 PRK11138 outer membrane biogen 98.3 0.00082 1.8E-08 63.9 25.0 258 126-468 120-390 (394)
317 PF11768 DUF3312: Protein of u 98.2 0.00035 7.5E-09 65.6 20.7 76 231-317 256-332 (545)
318 KOG1008 Uncharacterized conser 98.2 2.3E-06 5.1E-11 79.8 5.8 211 34-372 55-276 (783)
319 KOG1008 Uncharacterized conser 98.2 7.2E-07 1.6E-11 83.1 1.9 194 196-430 71-276 (783)
320 KOG2066 Vacuolar assembly/sort 98.2 0.00016 3.4E-09 69.9 17.3 179 196-429 50-233 (846)
321 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.0023 4.9E-08 59.8 25.0 222 238-506 104-346 (353)
322 COG0823 TolB Periplasmic compo 98.1 0.00016 3.5E-09 68.0 16.0 185 234-461 192-388 (425)
323 KOG1645 RING-finger-containing 98.1 0.0009 1.9E-08 59.5 18.8 34 113-147 194-227 (463)
324 KOG2114 Vacuolar assembly/sort 98.1 0.00087 1.9E-08 65.5 20.1 203 199-442 39-256 (933)
325 PRK11138 outer membrane biogen 98.0 0.0016 3.4E-08 62.0 21.9 137 245-428 256-393 (394)
326 KOG1275 PAB-dependent poly(A) 98.0 0.00014 3E-09 71.3 14.2 180 297-514 148-340 (1118)
327 KOG3617 WD40 and TPR repeat-co 98.0 0.00018 3.9E-09 69.9 14.5 106 239-371 20-131 (1416)
328 PF11768 DUF3312: Protein of u 98.0 9.6E-05 2.1E-09 69.2 12.3 73 281-372 257-330 (545)
329 KOG1275 PAB-dependent poly(A) 98.0 0.00012 2.6E-09 71.6 12.8 184 126-370 147-341 (1118)
330 KOG3617 WD40 and TPR repeat-co 98.0 0.00034 7.5E-09 68.0 15.4 70 236-314 61-131 (1416)
331 PF04053 Coatomer_WDAD: Coatom 97.9 0.0034 7.4E-08 59.5 21.1 213 232-508 30-253 (443)
332 PF06977 SdiA-regulated: SdiA- 97.9 0.012 2.6E-07 51.0 22.2 128 233-368 116-247 (248)
333 KOG3621 WD40 repeat-containing 97.9 9.2E-05 2E-09 70.4 9.7 110 404-513 38-150 (726)
334 KOG1645 RING-finger-containing 97.9 0.0006 1.3E-08 60.6 13.8 99 337-452 188-291 (463)
335 PF08596 Lgl_C: Lethal giant l 97.9 0.0074 1.6E-07 56.4 21.9 209 231-468 83-332 (395)
336 PF13360 PQQ_2: PQQ-like domai 97.8 0.0032 6.9E-08 55.2 18.9 149 253-440 1-150 (238)
337 PF14655 RAB3GAP2_N: Rab3 GTPa 97.8 0.0063 1.4E-07 56.7 21.1 93 339-432 304-401 (415)
338 COG0823 TolB Periplasmic compo 97.8 0.0012 2.5E-08 62.4 16.2 185 283-506 192-388 (425)
339 KOG1897 Damage-specific DNA bi 97.7 0.064 1.4E-06 54.1 31.3 226 246-511 684-937 (1096)
340 PF08553 VID27: VID27 cytoplas 97.7 0.0072 1.6E-07 60.8 20.1 144 297-468 494-644 (794)
341 PRK02888 nitrous-oxide reducta 97.7 0.021 4.6E-07 55.4 22.0 119 234-362 320-451 (635)
342 PF08553 VID27: VID27 cytoplas 97.6 0.018 4E-07 58.0 22.1 212 126-372 493-725 (794)
343 KOG3621 WD40 repeat-containing 97.6 0.00051 1.1E-08 65.5 10.6 123 232-372 31-155 (726)
344 PF06977 SdiA-regulated: SdiA- 97.6 0.023 5.1E-07 49.2 19.7 177 230-429 17-201 (248)
345 KOG4649 PQQ (pyrrolo-quinoline 97.5 0.027 5.9E-07 47.5 17.7 110 291-434 18-128 (354)
346 PF06433 Me-amine-dh_H: Methyl 97.5 0.067 1.5E-06 48.0 23.3 262 123-439 44-329 (342)
347 PF04841 Vps16_N: Vps16, N-ter 97.5 0.1 2.2E-06 49.7 28.5 39 343-382 217-256 (410)
348 PF03178 CPSF_A: CPSF A subuni 97.5 0.035 7.6E-07 51.1 20.8 175 255-468 62-261 (321)
349 PF04841 Vps16_N: Vps16, N-ter 97.4 0.13 2.9E-06 48.8 27.6 57 402-459 219-276 (410)
350 KOG2395 Protein involved in va 97.4 0.0072 1.6E-07 56.1 14.2 141 298-468 348-497 (644)
351 PF04053 Coatomer_WDAD: Coatom 97.4 0.0084 1.8E-07 56.9 15.1 136 343-514 33-171 (443)
352 PF06433 Me-amine-dh_H: Methyl 97.3 0.049 1.1E-06 48.8 18.4 264 38-383 38-331 (342)
353 smart00320 WD40 WD40 repeats. 97.3 0.00045 9.9E-09 39.9 4.1 31 33-63 10-40 (40)
354 PF00930 DPPIV_N: Dipeptidyl p 97.2 0.09 1.9E-06 49.1 20.7 148 233-416 182-344 (353)
355 COG3391 Uncharacterized conser 97.2 0.11 2.4E-06 49.0 21.3 194 236-472 75-283 (381)
356 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.031 6.7E-07 40.8 13.3 64 235-310 43-110 (111)
357 PF00780 CNH: CNH domain; Int 97.2 0.15 3.3E-06 45.8 24.8 229 244-515 5-254 (275)
358 KOG4640 Anaphase-promoting com 97.2 0.0018 3.9E-08 61.2 8.6 77 235-321 21-99 (665)
359 COG3386 Gluconolactonase [Carb 97.1 0.16 3.5E-06 45.8 19.7 98 343-457 163-270 (307)
360 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0022 4.8E-08 38.8 5.3 34 32-65 8-41 (47)
361 COG3490 Uncharacterized protei 97.1 0.079 1.7E-06 45.6 16.1 201 286-515 70-309 (366)
362 KOG4640 Anaphase-promoting com 97.0 0.0033 7.2E-08 59.5 8.8 93 343-451 21-114 (665)
363 PF05694 SBP56: 56kDa selenium 97.0 0.05 1.1E-06 50.2 15.7 137 236-380 182-351 (461)
364 cd00216 PQQ_DH Dehydrogenases 96.9 0.51 1.1E-05 46.4 26.5 25 410-434 405-429 (488)
365 smart00320 WD40 WD40 repeats. 96.9 0.002 4.3E-08 37.0 4.1 34 278-312 7-40 (40)
366 PRK13616 lipoprotein LpqB; Pro 96.9 0.033 7.3E-07 55.2 14.5 145 344-513 351-522 (591)
367 PF10647 Gmad1: Lipoprotein Lp 96.8 0.12 2.5E-06 45.6 16.2 147 344-509 25-187 (253)
368 KOG2395 Protein involved in va 96.8 0.098 2.1E-06 49.0 15.8 98 253-371 402-500 (644)
369 COG3490 Uncharacterized protei 96.8 0.12 2.6E-06 44.5 14.8 191 241-468 120-344 (366)
370 COG3386 Gluconolactonase [Carb 96.7 0.42 9.1E-06 43.2 21.5 224 239-507 29-275 (307)
371 PF14583 Pectate_lyase22: Olig 96.7 0.48 1E-05 43.6 20.0 34 282-315 186-223 (386)
372 PF12894 Apc4_WD40: Anaphase-p 96.7 0.0057 1.2E-07 37.0 5.0 30 113-144 12-41 (47)
373 PF03178 CPSF_A: CPSF A subuni 96.6 0.55 1.2E-05 43.3 23.5 144 297-468 43-198 (321)
374 PRK13616 lipoprotein LpqB; Pro 96.6 0.29 6.2E-06 48.8 18.8 201 235-468 350-564 (591)
375 KOG4649 PQQ (pyrrolo-quinoline 96.4 0.48 1E-05 40.3 19.6 70 47-153 63-132 (354)
376 PF14783 BBS2_Mid: Ciliary BBS 96.4 0.24 5.1E-06 36.4 13.4 101 345-468 2-110 (111)
377 PF14583 Pectate_lyase22: Olig 96.2 1 2.2E-05 41.5 23.6 166 234-428 187-380 (386)
378 COG3204 Uncharacterized protei 96.0 0.93 2E-05 39.6 17.7 205 175-414 89-298 (316)
379 KOG2079 Vacuolar assembly/sort 95.9 0.058 1.3E-06 54.9 9.6 102 297-428 100-202 (1206)
380 PF02897 Peptidase_S9_N: Proly 95.7 0.14 3E-06 49.2 11.7 100 344-461 125-245 (414)
381 PF12234 Rav1p_C: RAVE protein 95.5 0.74 1.6E-05 45.6 15.6 116 237-371 32-156 (631)
382 PF12234 Rav1p_C: RAVE protein 95.4 0.43 9.4E-06 47.2 13.7 73 37-143 31-103 (631)
383 KOG2079 Vacuolar assembly/sort 95.4 0.05 1.1E-06 55.3 7.4 98 353-466 98-199 (1206)
384 KOG1916 Nuclear protein, conta 95.4 0.024 5.2E-07 56.4 4.9 98 205-314 153-265 (1283)
385 COG3391 Uncharacterized conser 95.3 1.3 2.9E-05 41.8 16.4 144 345-507 76-226 (381)
386 KOG2444 WD40 repeat protein [G 95.2 0.076 1.7E-06 44.1 6.6 143 248-431 33-179 (238)
387 PF02897 Peptidase_S9_N: Proly 95.2 3.2 7E-05 39.9 22.2 195 236-468 125-351 (414)
388 KOG4499 Ca2+-binding protein R 95.1 1.8 3.8E-05 36.5 16.6 144 234-410 108-264 (310)
389 PF10647 Gmad1: Lipoprotein Lp 95.0 2.3 5E-05 37.5 19.8 154 236-420 25-186 (253)
390 PF10214 Rrn6: RNA polymerase 95.0 5.4 0.00012 41.7 22.2 75 235-316 204-278 (765)
391 PF10313 DUF2415: Uncharacteri 95.0 0.11 2.3E-06 30.5 5.0 33 284-316 1-35 (43)
392 PF10313 DUF2415: Uncharacteri 94.9 0.15 3.2E-06 29.9 5.4 29 344-372 2-34 (43)
393 PF08728 CRT10: CRT10; InterP 94.9 2.5 5.5E-05 42.5 17.1 74 235-313 164-245 (717)
394 PF15390 DUF4613: Domain of un 94.9 4 8.7E-05 39.6 25.1 154 113-304 57-221 (671)
395 PF10168 Nup88: Nuclear pore c 94.8 0.73 1.6E-05 47.0 13.7 96 343-438 85-188 (717)
396 PRK13684 Ycf48-like protein; P 94.8 3.4 7.3E-05 38.2 17.5 151 343-513 173-328 (334)
397 cd00216 PQQ_DH Dehydrogenases 94.8 4.6 0.0001 39.7 31.0 28 127-154 111-138 (488)
398 PF00780 CNH: CNH domain; Int 94.7 3.1 6.6E-05 37.3 27.0 124 236-376 37-169 (275)
399 PF10168 Nup88: Nuclear pore c 94.7 6 0.00013 40.6 23.8 84 234-317 84-182 (717)
400 COG4590 ABC-type uncharacteriz 94.5 0.32 7E-06 44.8 9.3 157 343-514 221-384 (733)
401 PF15390 DUF4613: Domain of un 94.3 2 4.4E-05 41.4 14.2 156 234-429 19-186 (671)
402 PLN00033 photosystem II stabil 93.9 5.9 0.00013 37.5 17.6 146 344-511 240-394 (398)
403 PF14870 PSII_BNR: Photosynthe 93.9 4.7 0.0001 36.4 27.0 238 233-511 15-256 (302)
404 PF07995 GSDH: Glucose / Sorbo 93.5 6.3 0.00014 36.4 23.8 57 236-294 3-59 (331)
405 COG3204 Uncharacterized protei 93.4 5.1 0.00011 35.3 18.0 212 280-514 82-310 (316)
406 KOG2444 WD40 repeat protein [G 93.4 0.39 8.5E-06 40.1 7.1 65 246-318 70-136 (238)
407 KOG3630 Nuclear pore complex, 93.4 0.64 1.4E-05 48.2 9.9 154 235-417 101-261 (1405)
408 PF08728 CRT10: CRT10; InterP 93.1 7.3 0.00016 39.4 16.3 121 236-370 102-245 (717)
409 PF13449 Phytase-like: Esteras 92.9 7.6 0.00016 35.8 22.8 169 235-415 20-230 (326)
410 TIGR02604 Piru_Ver_Nterm putat 92.9 7.5 0.00016 36.6 16.0 58 404-463 128-204 (367)
411 KOG1897 Damage-specific DNA bi 92.9 13 0.00029 38.6 32.5 120 284-430 488-614 (1096)
412 PF05694 SBP56: 56kDa selenium 92.7 8.9 0.00019 36.1 22.2 234 245-506 86-392 (461)
413 KOG4460 Nuclear pore complex, 92.5 2.5 5.3E-05 40.2 11.5 89 400-514 104-196 (741)
414 TIGR02604 Piru_Ver_Nterm putat 92.3 8.3 0.00018 36.3 15.5 113 235-359 14-140 (367)
415 PF14870 PSII_BNR: Photosynthe 92.3 8.5 0.00018 34.8 28.6 147 343-512 145-299 (302)
416 PF07569 Hira: TUP1-like enhan 92.2 1 2.2E-05 38.6 8.3 79 291-372 18-96 (219)
417 KOG3630 Nuclear pore complex, 92.0 3.7 8E-05 43.0 13.0 153 343-505 101-261 (1405)
418 KOG2377 Uncharacterized conser 91.8 6.7 0.00014 36.8 13.2 128 238-384 26-153 (657)
419 KOG2280 Vacuolar assembly/sort 91.8 16 0.00034 36.8 19.6 55 236-295 85-139 (829)
420 PF05096 Glu_cyclase_2: Glutam 91.8 8.4 0.00018 33.7 19.9 187 233-460 43-249 (264)
421 TIGR03606 non_repeat_PQQ dehyd 90.2 18 0.0004 34.8 18.5 59 235-294 30-89 (454)
422 PF07569 Hira: TUP1-like enhan 90.0 2 4.3E-05 36.8 8.1 72 242-316 18-97 (219)
423 COG5167 VID27 Protein involved 89.6 20 0.00044 34.3 16.3 98 253-371 535-632 (776)
424 PF12657 TFIIIC_delta: Transcr 89.1 4.3 9.4E-05 33.3 9.2 30 401-430 87-122 (173)
425 COG4590 ABC-type uncharacteriz 89.0 2.3 5E-05 39.6 8.0 107 245-372 279-387 (733)
426 TIGR03075 PQQ_enz_alc_DH PQQ-d 88.8 27 0.00058 34.8 27.0 27 293-319 310-338 (527)
427 KOG1900 Nuclear pore complex, 88.6 18 0.00039 39.0 14.8 81 234-315 178-273 (1311)
428 PF14761 HPS3_N: Hermansky-Pud 88.2 8.3 0.00018 32.4 10.0 102 412-514 29-161 (215)
429 PHA02713 hypothetical protein; 88.1 17 0.00036 36.5 14.3 64 245-317 463-536 (557)
430 PRK10115 protease 2; Provision 88.0 5.9 0.00013 40.8 11.2 100 344-461 128-241 (686)
431 PF03022 MRJP: Major royal jel 87.9 20 0.00044 32.3 16.6 154 256-430 35-216 (287)
432 KOG4441 Proteins containing BT 87.8 26 0.00057 35.3 15.3 57 410-468 475-537 (571)
433 PF07995 GSDH: Glucose / Sorbo 87.8 23 0.0005 32.8 27.6 70 343-424 253-330 (331)
434 COG5167 VID27 Protein involved 87.7 17 0.00038 34.7 12.7 139 352-513 477-629 (776)
435 PF14655 RAB3GAP2_N: Rab3 GTPa 87.2 9.2 0.0002 36.3 11.0 37 33-69 305-341 (415)
436 PF12657 TFIIIC_delta: Transcr 86.8 9.9 0.00021 31.2 10.0 34 113-146 86-123 (173)
437 PF13449 Phytase-like: Esteras 86.8 26 0.00056 32.4 16.4 171 283-459 19-231 (326)
438 KOG2247 WD40 repeat-containing 86.2 0.12 2.7E-06 48.0 -1.6 138 284-457 35-174 (615)
439 KOG4499 Ca2+-binding protein R 86.2 20 0.00043 30.6 16.5 97 345-453 160-264 (310)
440 KOG2377 Uncharacterized conser 85.5 21 0.00045 33.7 11.8 103 343-459 67-170 (657)
441 KOG2280 Vacuolar assembly/sort 84.9 48 0.001 33.7 17.8 38 343-381 217-255 (829)
442 PF11635 Med16: Mediator compl 84.3 58 0.0013 34.2 18.4 75 234-309 259-345 (753)
443 PRK13684 Ycf48-like protein; P 84.1 36 0.00077 31.6 24.8 103 402-508 175-280 (334)
444 KOG4659 Uncharacterized conser 84.1 70 0.0015 35.0 21.6 38 346-384 596-635 (1899)
445 PF05096 Glu_cyclase_2: Glutam 84.1 29 0.00063 30.5 19.6 193 37-303 46-250 (264)
446 TIGR03118 PEPCTERM_chp_1 conse 83.9 32 0.00069 30.8 19.7 222 176-434 27-284 (336)
447 PLN00033 photosystem II stabil 83.5 42 0.00091 31.9 17.4 155 237-426 241-396 (398)
448 KOG2247 WD40 repeat-containing 83.1 0.34 7.3E-06 45.2 -0.3 134 176-358 39-175 (615)
449 PHA02713 hypothetical protein; 82.0 40 0.00086 34.0 13.6 54 410-465 463-524 (557)
450 KOG1983 Tomosyn and related SN 82.0 31 0.00067 37.3 13.3 36 34-69 34-69 (993)
451 KOG1916 Nuclear protein, conta 81.1 4.9 0.00011 41.0 6.7 178 230-434 128-328 (1283)
452 KOG3616 Selective LIM binding 80.4 71 0.0015 32.5 15.8 36 33-68 12-47 (1636)
453 PF14727 PHTB1_N: PTHB1 N-term 80.2 57 0.0012 31.2 27.6 58 248-315 147-205 (418)
454 COG4257 Vgb Streptogramin lyas 80.0 41 0.0009 29.6 19.6 178 235-458 104-291 (353)
455 TIGR02276 beta_rpt_yvtn 40-res 79.9 8.3 0.00018 22.3 5.2 30 352-382 1-32 (42)
456 PF08801 Nucleoporin_N: Nup133 79.7 26 0.00056 33.8 11.3 30 402-431 192-221 (422)
457 KOG1900 Nuclear pore complex, 79.7 33 0.00071 37.2 12.2 86 343-431 179-274 (1311)
458 PF14727 PHTB1_N: PTHB1 N-term 79.2 61 0.0013 31.0 23.3 149 293-468 34-200 (418)
459 PF14781 BBS2_N: Ciliary BBSom 79.1 27 0.00059 26.9 12.1 112 241-371 5-125 (136)
460 PF07676 PD40: WD40-like Beta 78.6 8.3 0.00018 22.0 4.8 30 282-311 7-38 (39)
461 COG3823 Glutamine cyclotransfe 78.3 39 0.00086 28.3 13.0 25 46-70 55-81 (262)
462 TIGR03075 PQQ_enz_alc_DH PQQ-d 78.3 77 0.0017 31.7 22.3 27 407-433 308-337 (527)
463 KOG4441 Proteins containing BT 78.1 81 0.0018 31.9 20.3 25 44-68 282-312 (571)
464 COG5276 Uncharacterized conser 78.0 50 0.0011 29.4 17.7 144 343-507 87-233 (370)
465 PF12341 DUF3639: Protein of u 77.6 6.2 0.00013 20.6 3.4 26 36-63 2-27 (27)
466 COG3823 Glutamine cyclotransfe 77.5 42 0.00091 28.2 13.4 68 245-320 55-125 (262)
467 KOG4460 Nuclear pore complex, 77.1 18 0.0004 34.7 8.6 91 34-148 102-202 (741)
468 PRK13615 lipoprotein LpqB; Pro 75.7 91 0.002 31.2 13.8 138 346-505 337-487 (557)
469 PF01436 NHL: NHL repeat; Int 75.1 9 0.00019 20.0 3.8 25 38-62 4-28 (28)
470 PF11725 AvrE: Pathogenicity f 72.6 1.8E+02 0.0039 33.1 19.4 64 402-468 705-768 (1774)
471 TIGR03606 non_repeat_PQQ dehyd 72.1 99 0.0022 30.0 14.1 61 284-354 30-90 (454)
472 PF07250 Glyoxal_oxid_N: Glyox 71.7 69 0.0015 28.0 10.5 122 289-431 72-199 (243)
473 PF10214 Rrn6: RNA polymerase 71.7 1.4E+02 0.0031 31.6 27.2 138 234-372 79-233 (765)
474 PF11715 Nup160: Nucleoporin N 69.9 19 0.00041 36.2 7.9 34 284-318 215-252 (547)
475 PF02333 Phytase: Phytase; In 69.2 1E+02 0.0022 29.0 17.2 111 199-315 175-291 (381)
476 PF11715 Nup160: Nucleoporin N 69.1 23 0.00051 35.5 8.3 31 125-155 229-259 (547)
477 PRK10115 protease 2; Provision 68.5 1.6E+02 0.0034 30.8 25.0 112 235-371 127-255 (686)
478 PF03022 MRJP: Major royal jel 67.4 97 0.0021 28.0 19.8 30 285-315 187-216 (287)
479 PF14781 BBS2_N: Ciliary BBSom 67.3 56 0.0012 25.3 12.1 71 289-373 4-83 (136)
480 TIGR02171 Fb_sc_TIGR02171 Fibr 67.0 41 0.00089 35.2 9.2 55 402-456 352-412 (912)
481 COG4257 Vgb Streptogramin lyas 65.8 97 0.0021 27.4 19.9 195 235-468 62-258 (353)
482 KOG4659 Uncharacterized conser 65.1 2.3E+02 0.0049 31.5 17.3 16 404-419 597-612 (1899)
483 smart00564 PQQ beta-propeller 65.0 19 0.00042 19.3 4.0 24 128-151 8-31 (33)
484 PRK13613 lipoprotein LpqB; Pro 64.6 1.7E+02 0.0037 29.8 14.1 144 344-506 364-525 (599)
485 PF03088 Str_synth: Strictosid 62.0 51 0.0011 23.4 6.4 42 417-460 33-74 (89)
486 PHA03098 kelch-like protein; P 61.2 1.8E+02 0.004 29.1 14.4 23 294-317 342-369 (534)
487 PF02333 Phytase: Phytase; In 60.7 1.5E+02 0.0033 27.9 22.1 126 284-431 156-292 (381)
488 PHA03098 kelch-like protein; P 60.6 1.9E+02 0.0041 29.0 16.2 23 294-317 487-514 (534)
489 PF14761 HPS3_N: Hermansky-Pud 59.7 1.1E+02 0.0024 26.0 18.3 76 234-313 134-213 (215)
490 KOG1898 Splicing factor 3b, su 58.5 2.7E+02 0.0058 30.1 25.4 34 33-66 580-619 (1205)
491 PF01731 Arylesterase: Arylest 57.4 40 0.00087 23.8 5.2 32 284-315 54-85 (86)
492 TIGR02608 delta_60_rpt delta-6 56.6 40 0.00086 21.3 4.6 17 403-419 4-20 (55)
493 COG5290 IkappaB kinase complex 55.2 1.7E+02 0.0037 30.3 10.7 30 35-64 112-141 (1243)
494 PF01731 Arylesterase: Arylest 54.9 62 0.0013 22.8 5.8 28 344-371 55-84 (86)
495 PF01011 PQQ: PQQ enzyme repea 54.7 38 0.00082 19.2 4.3 28 128-155 2-29 (38)
496 PRK13614 lipoprotein LpqB; Pro 54.3 2.5E+02 0.0054 28.4 14.6 143 344-506 344-504 (573)
497 PRK13615 lipoprotein LpqB; Pro 54.1 1.6E+02 0.0034 29.6 10.5 96 403-506 337-435 (557)
498 KOG1983 Tomosyn and related SN 52.7 1E+02 0.0022 33.5 9.7 24 408-431 243-266 (993)
499 KOG3522 Predicted guanine nucl 52.5 3E+02 0.0065 28.9 12.4 74 233-315 625-698 (925)
500 PF12768 Rax2: Cortical protei 52.5 1.8E+02 0.0038 26.2 10.2 54 255-317 16-75 (281)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.5e-53 Score=355.76 Aligned_cols=327 Identities=14% Similarity=0.274 Sum_probs=279.4
Q ss_pred cccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccc
Q 010206 28 AGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (515)
Q Consensus 28 ~~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (515)
.....+|.++|.|++|+|+|+.||+|+.|.++++||..+.... .+..+|.
T Consensus 108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~-----------------------~t~KgH~------- 157 (480)
T KOG0271|consen 108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL-----------------------FTCKGHK------- 157 (480)
T ss_pred ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc-----------------------eeecCCc-------
Confidence 3446699999999999999999999999999999999887643 5678898
Q ss_pred cccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccc
Q 010206 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (515)
Q Consensus 108 ~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~ 187 (515)
..|.+++| +||++.|++|+.||+|++||..+++..- +
T Consensus 158 -----~WVlcvaw--sPDgk~iASG~~dg~I~lwdpktg~~~g---------------------------------~--- 194 (480)
T KOG0271|consen 158 -----NWVLCVAW--SPDGKKIASGSKDGSIRLWDPKTGQQIG---------------------------------R--- 194 (480)
T ss_pred -----cEEEEEEE--CCCcchhhccccCCeEEEecCCCCCccc---------------------------------c---
Confidence 99999999 5678899999999999999998875211 0
Q ss_pred cccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC-----CCCEEEEe-CCCcEEEEe
Q 010206 188 RNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-----DGETFISA-DDLRINLWN 261 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~s~-~d~~i~iwd 261 (515)
.+.+|...|++++|.| ..++|+++ .||+|+|||
T Consensus 195 -----------------------------------------~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd 233 (480)
T KOG0271|consen 195 -----------------------------------------ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWD 233 (480)
T ss_pred -----------------------------------------cccCcccceeEEeecccccCCCccceecccCCCCEEEEE
Confidence 0478999999999965 67789998 899999999
Q ss_pred CCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccc
Q 010206 262 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 341 (515)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (515)
+..+...+ .+.+|+.+|+|+.|--+| +|++|+.|++|++|+...|.++.. +++|
T Consensus 234 ~~~~~~~~--------~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r~----------------lkGH 287 (480)
T KOG0271|consen 234 TKLGTCVR--------TLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCRE----------------LKGH 287 (480)
T ss_pred ccCceEEE--------EeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHHHh----------------hccc
Confidence 98665543 678999999999999776 999999999999999999877543 6777
Q ss_pred ccceeEEEEc-----------cCC-------------------------CEEEEEcC-CeEEEEEeeCCCCCeeeEeeec
Q 010206 342 IASISDIKFA-----------RNG-------------------------RHILSRDY-MTLKLWDINMDSGPVATFQVHE 384 (515)
Q Consensus 342 ~~~i~~~~~s-----------~~~-------------------------~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~ 384 (515)
...|+.++++ |.+ ..|++|+| .++.+|+.....+++..+.+|.
T Consensus 288 ahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq 367 (480)
T KOG0271|consen 288 AHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQ 367 (480)
T ss_pred chheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchh
Confidence 7888888776 223 34999987 9999999887688999999999
Q ss_pred cccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCC
Q 010206 385 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSG 464 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 464 (515)
.. |..+.||||+++||++|.|..|++|+..+|+ .+.++.+|-.+|..++|+.|.++|+|||.|.
T Consensus 368 ~l---------------Vn~V~fSPd~r~IASaSFDkSVkLW~g~tGk-~lasfRGHv~~VYqvawsaDsRLlVS~SkDs 431 (480)
T KOG0271|consen 368 AL---------------VNHVSFSPDGRYIASASFDKSVKLWDGRTGK-FLASFRGHVAAVYQVAWSADSRLLVSGSKDS 431 (480)
T ss_pred hh---------------eeeEEECCCccEEEEeecccceeeeeCCCcc-hhhhhhhccceeEEEEeccCccEEEEcCCCc
Confidence 87 4599999999999999999999999999985 4489999999999999999999999999999
Q ss_pred eEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCc-EEEE
Q 010206 465 VVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS-LYMY 513 (515)
Q Consensus 465 ~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~-~~i~ 513 (515)
++++ ++...-.+...+.+|...|.++.|+|||..+++|+.|. +.+|
T Consensus 432 TLKv---w~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 432 TLKV---WDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLW 478 (480)
T ss_pred eEEE---EEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEee
Confidence 9999 33222234456667999999999999999999998776 5555
No 2
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-52 Score=345.96 Aligned_cols=429 Identities=63% Similarity=1.000 Sum_probs=362.0
Q ss_pred ccccccccchhhhhcccccccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCcc
Q 010206 10 AAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPE 89 (515)
Q Consensus 10 ~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (515)
.+.....|+|.|.|+.. +...+-|++|.|.-+|.+||||+.+|+|.+|.-..... .+
T Consensus 5 ~~~~~~~w~f~~~~~~~-----vteadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~------------------~e 61 (433)
T KOG1354|consen 5 GKNEILMWKFSQVFGLE-----VTEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK------------------GE 61 (433)
T ss_pred Ccchhhhhhhhhhhcce-----echhcceeeEEeecccceEeecCCCCeEEEeecccccc------------------cc
Confidence 34567889999988854 66788999999999999999999999999998654331 27
Q ss_pred ceeeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccC
Q 010206 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (515)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 169 (515)
|++...++.|+++|+|+++++++++|+.++|++..+...++..++|++|++|.+....... ...+....
T Consensus 62 y~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~-~~~~~~~~---------- 130 (433)
T KOG1354|consen 62 YNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKK-EGYNLPEE---------- 130 (433)
T ss_pred eeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeecccccc-cccccccc----------
Confidence 8899999999999999999999999999999998888899999999999999998765433 11111000
Q ss_pred CCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEE
Q 010206 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF 249 (515)
Q Consensus 170 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 249 (515)
...+.-..+++.- +...+......|++.+..+|...|+++.++.|++.+
T Consensus 131 -----------------------------~~~~~~~~lr~p~--~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~ 179 (433)
T KOG1354|consen 131 -----------------------------GPPGTITSLRLPV--EGRHDLEVEASPRRVYANAHTYHINSISVNSDKETF 179 (433)
T ss_pred -----------------------------CCCCccceeecee--eccccceeeeeeeeeccccceeEeeeeeecCccceE
Confidence 0112223445444 555666777889999989999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeec
Q 010206 250 ISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 329 (515)
Q Consensus 250 ~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 329 (515)
++++|-.|.+|+++-..+.+++++++|..++.....|++..|+|..+++|+..+..|+|++.|+|...+|..+.+.|+.+
T Consensus 180 lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEep 259 (433)
T KOG1354|consen 180 LSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEP 259 (433)
T ss_pred eeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccc
Confidence 99999999999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred cCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcC
Q 010206 330 EAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 409 (515)
Q Consensus 330 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 409 (515)
..+..+.++.+..+.|..+.|++.|+|+++.+.-+|++||+.+..+++.++..|.....+++.+|++++|++.+.++|+.
T Consensus 260 edp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 260 EDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred cCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCC
Q 010206 410 DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMK 489 (515)
Q Consensus 410 ~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~ 489 (515)
++.+++||+..+.+++|++..+.....+++....+...-... .-+.+.++ ++..+.+..+..+++...
T Consensus 340 ~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~-k~~~V~~~-----------g~r~~~~~~vd~ldf~kk 407 (433)
T KOG1354|consen 340 NDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVL-KLRLVSSS-----------GKRKRDEISVDALDFRKK 407 (433)
T ss_pred CcceEecccccceEEEecCCCCcceeecccccccCCcccccc-cceeeecC-----------CCccccccccchhhhhhH
Confidence 999999999999999999888866666666555442111111 11112222 222223455566778899
Q ss_pred eeEEEEcCCCCEEEEEcCCcEEEEeC
Q 010206 490 LLHLAWHPSENSIACAASNSLYMYYA 515 (515)
Q Consensus 490 i~~~~~s~~~~~la~~~~~~~~i~~~ 515 (515)
|.+.+|+|..+.||++..+++++|++
T Consensus 408 ilh~aWhp~en~ia~aatnnlyif~~ 433 (433)
T KOG1354|consen 408 ILHTAWHPKENSIAVAATNNLYIFQD 433 (433)
T ss_pred HHhhccCCccceeeeeecCceEEecC
Confidence 99999999999999999999999985
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.2e-47 Score=325.65 Aligned_cols=284 Identities=20% Similarity=0.321 Sum_probs=254.4
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
..++-..+|..+.||+|++.||||+.+|.++||+..+.. .+..|.+|.
T Consensus 170 SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~-----------------------~~~~l~gH~--------- 217 (459)
T KOG0272|consen 170 SQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN-----------------------LLQTLRGHT--------- 217 (459)
T ss_pred hhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc-----------------------eeEEEeccc---------
Confidence 356778999999999999999999999999999987654 457899999
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
+.|.++.|+|..++..+++++.||++++|++.+......
T Consensus 218 ---~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~-------------------------------------- 256 (459)
T KOG0272|consen 218 ---SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQD-------------------------------------- 256 (459)
T ss_pred ---cceeeEEEccCCCccceeeeccCCceeeeccCCCcchhh--------------------------------------
Confidence 889999999875567899999999999999887531110
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
+.+|...|..++|+|+|++|+++ -|.+-++||+++....
T Consensus 257 ----------------------------------------l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~El 296 (459)
T KOG0272|consen 257 ----------------------------------------LEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSEL 296 (459)
T ss_pred ----------------------------------------hhcchhhheeeeecCCCceeeecccccchhhcccccchhh
Confidence 46888999999999999999998 7999999999988765
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
. ..++|...|.+++|+||| .++++|+.|..-+|||+|++..+ .++.+|..+|.+|
T Consensus 297 L--------~QEGHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~i----------------m~L~gH~k~I~~V 351 (459)
T KOG0272|consen 297 L--------LQEGHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRCI----------------MFLAGHIKEILSV 351 (459)
T ss_pred H--------hhcccccccceeEecCCC-ceeeccCccchhheeecccCcEE----------------EEecccccceeeE
Confidence 4 568999999999999999 99999999999999999999763 3477899999999
Q ss_pred EEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcC-CCCEEEEecCCCcEEEE
Q 010206 349 KFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVF 426 (515)
Q Consensus 349 ~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~s~dg~i~iw 426 (515)
.|+|+|..||+|+ |++++|||+++ .+++.++.+|... |..++|+| .|.+|+|++.|++++||
T Consensus 352 ~fsPNGy~lATgs~Dnt~kVWDLR~-r~~ly~ipAH~nl---------------VS~Vk~~p~~g~fL~TasyD~t~kiW 415 (459)
T KOG0272|consen 352 AFSPNGYHLATGSSDNTCKVWDLRM-RSELYTIPAHSNL---------------VSQVKYSPQEGYFLVTASYDNTVKIW 415 (459)
T ss_pred eECCCceEEeecCCCCcEEEeeecc-cccceecccccch---------------hhheEecccCCeEEEEcccCcceeee
Confidence 9999999999986 49999999997 8889999999987 45899998 78899999999999999
Q ss_pred ecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 427 GCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.-.+. .+.++|.+|.+.|-++.+++++.++++++.|.++++
T Consensus 416 s~~~~-~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KL 456 (459)
T KOG0272|consen 416 STRTW-SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKL 456 (459)
T ss_pred cCCCc-ccchhhcCCccceEEEEeccCCceEEEeccCceeee
Confidence 99988 455899999999999999999999999999999998
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.2e-46 Score=313.24 Aligned_cols=297 Identities=16% Similarity=0.267 Sum_probs=252.1
Q ss_pred ccchhhhhcccccccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeee
Q 010206 16 EWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTE 95 (515)
Q Consensus 16 ~w~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (515)
-|++.. +.....-.+|...|.|++|+|||+.||+|+.||.|++||..+++.. -..
T Consensus 141 ~WD~~T---eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~----------------------g~~ 195 (480)
T KOG0271|consen 141 LWDLDT---ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQI----------------------GRA 195 (480)
T ss_pred eeccCC---CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcc----------------------ccc
Confidence 477753 2233334689999999999999999999999999999999988764 345
Q ss_pred cccCCCcccccccccccceeEEEEEee---cCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCC
Q 010206 96 FQSHEPEFDYLKSLEIEEKINKIRWCQ---SANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (515)
Q Consensus 96 ~~~h~~~~~~~~~~~~~~~v~~l~~~~---~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (515)
+.+|. ..|++++|-| .++..+|++++.||.++|||+..+.....
T Consensus 196 l~gH~------------K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~--------------------- 242 (480)
T KOG0271|consen 196 LRGHK------------KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRT--------------------- 242 (480)
T ss_pred ccCcc------------cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEE---------------------
Confidence 88998 8999999977 45567899999999999999887653322
Q ss_pred cCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe
Q 010206 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 252 (515)
Q Consensus 173 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 252 (515)
+.+|...|+|+.|.-+| +|++|
T Consensus 243 ---------------------------------------------------------lsgHT~~VTCvrwGG~g-liySg 264 (480)
T KOG0271|consen 243 ---------------------------------------------------------LSGHTASVTCVRWGGEG-LIYSG 264 (480)
T ss_pred ---------------------------------------------------------eccCccceEEEEEcCCc-eEEec
Confidence 46899999999998766 77777
Q ss_pred -CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEe-----------cCC------------------------C
Q 010206 253 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-----------PTH------------------------C 296 (515)
Q Consensus 253 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~-----------p~~------------------------~ 296 (515)
.|++|++|+...+.... .+.+|...|+.++.+ |.+ +
T Consensus 265 S~DrtIkvw~a~dG~~~r--------~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~ 336 (480)
T KOG0271|consen 265 SQDRTIKVWRALDGKLCR--------ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSG 336 (480)
T ss_pred CCCceEEEEEccchhHHH--------hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCc
Confidence 89999999998765442 678999999988877 222 1
Q ss_pred cEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCC
Q 010206 297 NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSG 375 (515)
Q Consensus 297 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~ 375 (515)
..|++|+.|.++.+|+....+.. ..-+.+|..-|+.+.||||++++|+++- ..|++||.++ ++
T Consensus 337 erlVSgsDd~tlflW~p~~~kkp---------------i~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t-Gk 400 (480)
T KOG0271|consen 337 ERLVSGSDDFTLFLWNPFKSKKP---------------ITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT-GK 400 (480)
T ss_pred ceeEEecCCceEEEecccccccc---------------hhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCC-cc
Confidence 25999999999999997654321 1226889999999999999999999985 9999999997 99
Q ss_pred CeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCC
Q 010206 376 PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP 455 (515)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 455 (515)
.+.+|++|-.. |+.++|+.|.++|++||.|.++++|++++. ++...|.+|.+.|.++.|+|||+
T Consensus 401 ~lasfRGHv~~---------------VYqvawsaDsRLlVS~SkDsTLKvw~V~tk-Kl~~DLpGh~DEVf~vDwspDG~ 464 (480)
T KOG0271|consen 401 FLASFRGHVAA---------------VYQVAWSADSRLLVSGSKDSTLKVWDVRTK-KLKQDLPGHADEVFAVDWSPDGQ 464 (480)
T ss_pred hhhhhhhccce---------------eEEEEeccCccEEEEcCCCceEEEEEeeee-eecccCCCCCceEEEEEecCCCc
Confidence 99999999877 569999999999999999999999999986 67789999999999999999999
Q ss_pred eeEeecCCCeEEE
Q 010206 456 SRPLGSLSGVVRR 468 (515)
Q Consensus 456 ~l~s~~~d~~v~l 468 (515)
.+++|+.|+.+++
T Consensus 465 rV~sggkdkv~~l 477 (480)
T KOG0271|consen 465 RVASGGKDKVLRL 477 (480)
T ss_pred eeecCCCceEEEe
Confidence 9999999999998
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.2e-42 Score=302.08 Aligned_cols=431 Identities=16% Similarity=0.159 Sum_probs=308.6
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCc-ccCccccCcccccccccCCccceeeeecccCCCccc----
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTR-DNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFD---- 104 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~---- 104 (515)
.+.+|..+++-..|||.|.|+|+|...|.|+|||....+ .++...+.+.+...++.|+++.+.+.....-...|-
T Consensus 54 iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~ 133 (603)
T KOG0318|consen 54 IYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFL 133 (603)
T ss_pred eeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEE
Confidence 356899999999999999999999999999999987743 332333455566668888887766543211111110
Q ss_pred --cccc----ccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCce
Q 010206 105 --YLKS----LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS 178 (515)
Q Consensus 105 --~~~~----~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 178 (515)
.-.+ ..|...|+++.|-|+.+ =++++++.|++|.+|+=..-+.+.....+ +.-|. ++.
T Consensus 134 ~DSG~SvGei~GhSr~ins~~~KpsRP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~H--------skFV~-------~VR 197 (603)
T KOG0318|consen 134 WDSGNSVGEITGHSRRINSVDFKPSRP-FRIATGSDDNTVAFFEGPPFKFKSSFREH--------SKFVN-------CVR 197 (603)
T ss_pred ecCCCccceeeccceeEeeeeccCCCc-eEEEeccCCCeEEEeeCCCeeeeeccccc--------cccee-------eEE
Confidence 0000 02448899999987665 47999999999999986665554443333 11222 889
Q ss_pred eecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeee--eccCcCCeEEEEecCCCCEEEEe-CCC
Q 010206 179 YMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIY--AHAHDYHINSISNNSDGETFISA-DDL 255 (515)
Q Consensus 179 ~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~-~d~ 255 (515)
|+|||... ++.+.||.+.+|| -.+.+. ...+ ..+|.+.|.+++|+||++.|+++ .|.
T Consensus 198 ysPDG~~F------------at~gsDgki~iyD--Gktge~------vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk 257 (603)
T KOG0318|consen 198 YSPDGSRF------------ATAGSDGKIYIYD--GKTGEK------VGELEDSDAHKGSIFALSWSPDSTQFLTVSADK 257 (603)
T ss_pred ECCCCCeE------------EEecCCccEEEEc--CCCccE------EEEecCCCCccccEEEEEECCCCceEEEecCCc
Confidence 99999998 9999999999999 333332 2221 25899999999999999999998 899
Q ss_pred cEEEEeCCCCCccccee--------------------c---------------ccCccccccCCceEEEEEecCCCcEEE
Q 010206 256 RINLWNLEISNQSFNIV--------------------D---------------VKPANMEDLTEVITSAEFHPTHCNMLA 300 (515)
Q Consensus 256 ~i~iwd~~~~~~~~~~~--------------------~---------------~~~~~~~~~~~~i~~i~~~p~~~~~l~ 300 (515)
+++|||+.+.+...++. . ..+..+.+|...|+++..+|++ ..|+
T Consensus 258 t~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~-~~i~ 336 (603)
T KOG0318|consen 258 TIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG-KTIY 336 (603)
T ss_pred eEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC-CEEE
Confidence 99999998764221110 0 0124567899999999999999 9999
Q ss_pred EEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCC-------
Q 010206 301 YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMD------- 373 (515)
Q Consensus 301 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~------- 373 (515)
+|+.||.|.-||..++.... ..-.+|...|.+++-+..+.++..|-|.++++.++...
T Consensus 337 SgsyDG~I~~W~~~~g~~~~---------------~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~ 401 (603)
T KOG0318|consen 337 SGSYDGHINSWDSGSGTSDR---------------LAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEV 401 (603)
T ss_pred eeccCceEEEEecCCccccc---------------cccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccce
Confidence 99999999999998876421 01256778899999987777777776789999877421
Q ss_pred ----CCCeeeEeeeccc------ccc------ccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCC-ccee
Q 010206 374 ----SGPVATFQVHEHL------RPK------LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS-AEST 436 (515)
Q Consensus 374 ----~~~~~~~~~~~~~------~~~------~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~-~~~~ 436 (515)
.+|...-....+. ... .......+..+...+++++|+++.++.|+.|+.|+||.+..+. +...
T Consensus 402 ~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~ 481 (603)
T KOG0318|consen 402 VKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEA 481 (603)
T ss_pred eecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCccccee
Confidence 1111110000000 000 0011111223345689999999999999999999999998654 2335
Q ss_pred eeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccc-cccCCeeEEEEcCCCCEEEEEc-CCcEEEEe
Q 010206 437 TLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAF-DFSMKLLHLAWHPSENSIACAA-SNSLYMYY 514 (515)
Q Consensus 437 ~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~la~~~-~~~~~i~~ 514 (515)
.+..|..+++.++++||+.+||++...+.+.+++-... +...... -|.++|.+++|+|+..++|+|+ +..++||+
T Consensus 482 ~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~---~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 482 KLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASR---EVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred eeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccC---ceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEE
Confidence 77899999999999999999999999999999332221 2222233 3899999999999999999999 56699987
Q ss_pred C
Q 010206 515 A 515 (515)
Q Consensus 515 ~ 515 (515)
.
T Consensus 559 v 559 (603)
T KOG0318|consen 559 V 559 (603)
T ss_pred c
Confidence 3
No 6
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-44 Score=297.58 Aligned_cols=439 Identities=50% Similarity=0.765 Sum_probs=347.1
Q ss_pred cccchhhhhcccccccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeee
Q 010206 15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKT 94 (515)
Q Consensus 15 ~~w~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (515)
-.|+|+||||++.........+.|+++.|...|.|||+|...|+|.+|...... .-+|++..
T Consensus 6 ~~~kf~QCfgdk~d~~~~tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~------------------~ceykf~t 67 (460)
T COG5170 6 EILKFKQCFGDKLDLNSSTEADKITAVEFDETGLYLATGDKGGRVVLFEREKSY------------------GCEYKFFT 67 (460)
T ss_pred hhhhhHhhhcchhhcccccccceeeEEEeccccceEeecCCCceEEEeeccccc------------------ccchhhhh
Confidence 469999999999999999999999999999999999999999999999865432 34788999
Q ss_pred ecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcC
Q 010206 95 EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (515)
Q Consensus 95 ~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 174 (515)
+|++|+++|+|+++++++++|+.|.|+.......++..+.|++|++|.+....++.+.+.+....
T Consensus 68 eFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~--------------- 132 (460)
T COG5170 68 EFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDS--------------- 132 (460)
T ss_pred hhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccc---------------
Confidence 99999999999999999999999999876666789999999999999999876655544443221
Q ss_pred CCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCC
Q 010206 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADD 254 (515)
Q Consensus 175 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d 254 (515)
+. +|-+..+ .....+++.. +..........+.+.+...|...|+++.|+.|.+.+++++|
T Consensus 133 --~~-~~~~g~~---------------~s~~~l~lpr--ls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDd 192 (460)
T COG5170 133 --FH-SPMGGPL---------------TSTKELLLPR--LSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADD 192 (460)
T ss_pred --cc-cccCCCc---------------CCHHHhhccc--ccccceEEEeccceeccccceeEeeeeeecCchheeeeccc
Confidence 11 1111111 0111222222 22223333345566666889999999999999999999999
Q ss_pred CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCc
Q 010206 255 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 334 (515)
Q Consensus 255 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 334 (515)
-.|.+|+++.....+.+++++|..++.....|++..|+|..++.+...+..|.|++-|+|...+|....+.++....+..
T Consensus 193 LrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~ 272 (460)
T COG5170 193 LRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVD 272 (460)
T ss_pred eeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCccc
Confidence 99999999999999999999999999889999999999998889999999999999999999888887777777777777
Q ss_pred cccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEE
Q 010206 335 RSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 414 (515)
Q Consensus 335 ~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 414 (515)
..++.+..+.|..+.|+++|+++++.+.-+++|||+++...++++...|......++..|++++|++.+.+.||.|.+.+
T Consensus 273 ~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v 352 (460)
T COG5170 273 VDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHV 352 (460)
T ss_pred chhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccc
Confidence 77888888999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred EEecCCCcEEEEecCCCCcc----eeeeccCCCce---eeE--------EECCCCCeeEeecCCCeEEEecCCCCCcccc
Q 010206 415 ATGSYSNLFRVFGCSEGSAE----STTLEASKNPM---RRQ--------VQTPSRPSRPLGSLSGVVRRVKGADNSALDA 479 (515)
Q Consensus 415 ~s~s~dg~i~iw~~~~~~~~----~~~~~~~~~~v---~~~--------~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~ 479 (515)
.+|+..+..-+|-..+.+.. +..+..+..+- .+. ....+.....+.+.+|.+.. + .
T Consensus 353 ~sgsy~NNfgiyp~~ssg~~D~g~vv~~ad~~a~~~~~k~~~nnv~kkd~~kn~~~rs~ss~a~g~~~~--~-------e 423 (460)
T COG5170 353 LSGSYSNNFGIYPTDSSGFKDVGHVVNLADGSAEDFKVKCETNNVEKKDKLKNNDWRSVSSSADGFVVA--C-------E 423 (460)
T ss_pred cccccccceeeeccccCCCCcceEEEecccCCcccccCcccccccccccccccccccccccccCcceee--c-------c
Confidence 99999988888875443221 11222221111 111 11111222444555555544 1 1
Q ss_pred CCccccccCCeeEEEEcCCCCEEEEEcCCcEEEEeC
Q 010206 480 NGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 515 (515)
Q Consensus 480 ~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~i~~~ 515 (515)
....+.+...|.+..|+|-..-+|++..+++++|++
T Consensus 424 D~d~ld~~k~ilh~sWhp~e~svaiaatnnlfvfs~ 459 (460)
T COG5170 424 DPDNLDLLKKILHRSWHPFEDSVAIAATNNLFVFSK 459 (460)
T ss_pred CcchhHHHHHHHhhccCCcccceeeeecCceEEEec
Confidence 112334567899999999999999999999999985
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.3e-42 Score=291.64 Aligned_cols=279 Identities=17% Similarity=0.222 Sum_probs=238.4
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
..+|..+.| +.++..|++|+.+|.+++|+..+......
T Consensus 175 ~rPis~~~f--S~ds~~laT~swsG~~kvW~~~~~~~~~~---------------------------------------- 212 (459)
T KOG0272|consen 175 TRPISGCSF--SRDSKHLATGSWSGLVKVWSVPQCNLLQT---------------------------------------- 212 (459)
T ss_pred CCcceeeEe--ecCCCeEEEeecCCceeEeecCCcceeEE----------------------------------------
Confidence 367888888 56677999999999999999876532221
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC--CCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
+.+|...|.++.|+|. +..|++| .||++++|++.+....
T Consensus 213 --------------------------------------l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l 254 (459)
T KOG0272|consen 213 --------------------------------------LRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPL 254 (459)
T ss_pred --------------------------------------EeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcch
Confidence 4689999999999997 6689998 8999999999866544
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
. .+++|...|..++|+|+| ++|++++.|.+-++||++++..... ..||...|.++
T Consensus 255 ~--------~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~ElL~----------------QEGHs~~v~~i 309 (459)
T KOG0272|consen 255 Q--------DLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSELLL----------------QEGHSKGVFSI 309 (459)
T ss_pred h--------hhhcchhhheeeeecCCC-ceeeecccccchhhcccccchhhHh----------------hccccccccee
Confidence 2 778999999999999999 9999999999999999999875321 47899999999
Q ss_pred EEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 349 KFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 349 ~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
+|.|||.++++|+ |..-+|||+++ ++++-.+.+|... |.+++|+|+|..|||||.|++++|||
T Consensus 310 af~~DGSL~~tGGlD~~~RvWDlRt-gr~im~L~gH~k~---------------I~~V~fsPNGy~lATgs~Dnt~kVWD 373 (459)
T KOG0272|consen 310 AFQPDGSLAATGGLDSLGRVWDLRT-GRCIMFLAGHIKE---------------ILSVAFSPNGYHLATGSSDNTCKVWD 373 (459)
T ss_pred EecCCCceeeccCccchhheeeccc-CcEEEEecccccc---------------eeeEeECCCceEEeecCCCCcEEEee
Confidence 9999999999987 58889999998 9999999998765 56999999999999999999999999
Q ss_pred cCCCCcceeeeccCCCceeeEEECC-CCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEc
Q 010206 428 CSEGSAESTTLEASKNPMRRQVQTP-SRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 506 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~ 506 (515)
++... ...++.+|.+-|+.+.|+| .|.+|++++.|++++++. .........+.+|.+.|.+++.+||+.+|++++
T Consensus 374 LR~r~-~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs---~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s 449 (459)
T KOG0272|consen 374 LRMRS-ELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWS---TRTWSPLKSLAGHEGKVISLDISPDSQAIATSS 449 (459)
T ss_pred ecccc-cceecccccchhhheEecccCCeEEEEcccCcceeeec---CCCcccchhhcCCccceEEEEeccCCceEEEec
Confidence 99764 4689999999999999998 788999999999999922 222223335567999999999999999999887
Q ss_pred -CCcEEEEeC
Q 010206 507 -SNSLYMYYA 515 (515)
Q Consensus 507 -~~~~~i~~~ 515 (515)
+..+.+|+.
T Consensus 450 ~DRT~KLW~~ 459 (459)
T KOG0272|consen 450 FDRTIKLWRP 459 (459)
T ss_pred cCceeeeccC
Confidence 667999964
No 8
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.8e-40 Score=301.36 Aligned_cols=415 Identities=14% Similarity=0.161 Sum_probs=308.8
Q ss_pred ccccchhhhhcccccccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceee
Q 010206 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK 93 (515)
Q Consensus 14 ~~~w~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (515)
.++|.+.. +.....-...|..||.-++|+|.|.+||+|+.||.|+|||+..+. +.
T Consensus 86 lrv~~L~t--gk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~-----------------------~t 140 (775)
T KOG0319|consen 86 LRVWSLPT--GKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGY-----------------------CT 140 (775)
T ss_pred EEEEEccc--chHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCE-----------------------EE
Confidence 34566654 222222233599999999999999999999999999999998765 55
Q ss_pred eecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCee-EEEeeccCCcccCCCCCCccCCCC
Q 010206 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV-KKVFDWNVHPEKAAGNGPIFGSHV 172 (515)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~ 172 (515)
..|.+|. +.|.++.|.|..+...|++|..|+++++||+..... ......+. ..+.
T Consensus 141 h~fkG~g------------GvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~--------S~vt---- 196 (775)
T KOG0319|consen 141 HSFKGHG------------GVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHK--------SAVT---- 196 (775)
T ss_pred EEecCCC------------ceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhh--------hhee----
Confidence 7899998 999999999988877899999999999999996543 22222221 1222
Q ss_pred cCCCceeecCCCcccccc----------------------------c------cCCCCCCCCCCCcccEEeeeeeecccc
Q 010206 173 SAIPKSYMANGGCGERNF----------------------------G------CASNDSSFPPGGVSSLRLPVVVVTSQE 218 (515)
Q Consensus 173 ~~~~~~~~~~g~~l~~~~----------------------------~------~~~~~~~~~~~~~~~i~i~d~~~~~~~ 218 (515)
++++++|+..+-... . .....++++.+.+|.+++||.. ...
T Consensus 197 ---sL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~e--s~~ 271 (775)
T KOG0319|consen 197 ---SLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSE--SGK 271 (775)
T ss_pred ---eeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecc--cch
Confidence 556666654321100 0 0012466777788888887732 110
Q ss_pred cc-----c------------------------------------------------------------------------
Q 010206 219 TN-----L------------------------------------------------------------------------ 221 (515)
Q Consensus 219 ~~-----~------------------------------------------------------------------------ 221 (515)
.. .
T Consensus 272 ~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y 351 (775)
T KOG0319|consen 272 CVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLY 351 (775)
T ss_pred hhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEE
Confidence 00 0
Q ss_pred -ccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEE
Q 010206 222 -VAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML 299 (515)
Q Consensus 222 -~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l 299 (515)
........+.+|...|.++....+|.+|++| .|.++++|.++........+ ....+|...|.+++++..+..+|
T Consensus 352 ~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~----a~~~gH~~svgava~~~~~asff 427 (775)
T KOG0319|consen 352 TLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCV----AQANGHTNSVGAVAGSKLGASFF 427 (775)
T ss_pred ecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhh----hhhcccccccceeeecccCccEE
Confidence 0000011246888889999877778899998 79999999885333221111 25578999999999998888899
Q ss_pred EEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCee
Q 010206 300 AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVA 378 (515)
Q Consensus 300 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~ 378 (515)
++++.|+++++|++...+.... ...+. .......|...|++++++|+.+++++|+. .+.+||++.. .....
T Consensus 428 vsvS~D~tlK~W~l~~s~~~~~-~~~~~------~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-~~l~~ 499 (775)
T KOG0319|consen 428 VSVSQDCTLKLWDLPKSKETAF-PIVLT------CRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-LRLLG 499 (775)
T ss_pred EEecCCceEEEecCCCcccccc-cceeh------hhHHHHhhcccccceEecCCCceEEecccccceeeecccC-ceEEE
Confidence 9999999999999987332111 11111 11234668899999999999999999986 9999999994 88999
Q ss_pred eEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeE
Q 010206 379 TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP 458 (515)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 458 (515)
++.+|... |+++.|+|..+.|+|+|.|++|+||.+.+.+++ +++++|...|-...|-.+++.|+
T Consensus 500 vLsGH~RG---------------vw~V~Fs~~dq~laT~SgD~TvKIW~is~fSCl-kT~eGH~~aVlra~F~~~~~qli 563 (775)
T KOG0319|consen 500 VLSGHTRG---------------VWCVSFSKNDQLLATCSGDKTVKIWSISTFSCL-KTFEGHTSAVLRASFIRNGKQLI 563 (775)
T ss_pred EeeCCccc---------------eEEEEeccccceeEeccCCceEEEEEeccceee-eeecCccceeEeeeeeeCCcEEE
Confidence 99999854 779999999999999999999999999998666 89999999999999999999999
Q ss_pred eecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcEEEE
Q 010206 459 LGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 513 (515)
Q Consensus 459 s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~i~ 513 (515)
|++.||-+++ |+....+-....-.|...|.+++-+|....+++|+.|+.++|
T Consensus 564 S~~adGliKl---Wnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~ 615 (775)
T KOG0319|consen 564 SAGADGLIKL---WNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIF 615 (775)
T ss_pred eccCCCcEEE---EeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEE
Confidence 9999999999 433322222333469999999999999999999988885554
No 9
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.9e-39 Score=296.39 Aligned_cols=385 Identities=16% Similarity=0.219 Sum_probs=293.2
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|-+.|+++.|+.|.++|++|+.|-.++||.+...+.. ....+.+|.
T Consensus 141 ~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~---------------------~~~~l~gHk---------- 189 (893)
T KOG0291|consen 141 YLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNL---------------------FTYALNGHK---------- 189 (893)
T ss_pred ecCCccceeEEEeccCCceEEeccccceEEEEEecccccc---------------------ceEeccCCC----------
Confidence 5689999999999999999999999999999999866532 345688898
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEee-----------ccCCcccC--------CCCCCccCCC
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFD-----------WNVHPEKA--------AGNGPIFGSH 171 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----------~~~~~~~~--------~~~~~v~~~~ 171 (515)
..|-+.-| ..+...+++.+.||.+.+|............ ........ ..........
T Consensus 190 --d~VvacfF--~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~ 265 (893)
T KOG0291|consen 190 --DYVVACFF--GANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNS 265 (893)
T ss_pred --cceEEEEe--ccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccc
Confidence 88999888 5666789999999999999877221000000 00000000 0000000000
Q ss_pred CcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEE
Q 010206 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 251 (515)
Q Consensus 172 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 251 (515)
...+..+|.+.-..| +++-..|...+|+ +.+. .+... +.-...+|..++|+..|.+|+.
T Consensus 266 ~kvtaa~fH~~t~~l------------vvgFssG~f~Lye--lP~f------~lih~-LSis~~~I~t~~~N~tGDWiA~ 324 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLL------------VVGFSSGEFGLYE--LPDF------NLIHS-LSISDQKILTVSFNSTGDWIAF 324 (893)
T ss_pred cceeeeeccCCceEE------------EEEecCCeeEEEe--cCCc------eEEEE-eecccceeeEEEecccCCEEEE
Confidence 111133444444444 8888999998888 3322 22222 2334578999999999999999
Q ss_pred e--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeec
Q 010206 252 A--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 329 (515)
Q Consensus 252 ~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 329 (515)
| .-|.+.+|+..+..-.. +.++|...+++++++||| +++++|+.||.|++||...+.+..
T Consensus 325 g~~klgQLlVweWqsEsYVl--------KQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~SgfC~v--------- 386 (893)
T KOG0291|consen 325 GCSKLGQLLVWEWQSESYVL--------KQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGFCFV--------- 386 (893)
T ss_pred cCCccceEEEEEeeccceee--------eccccccceeeEEECCCC-cEEEeccCCCcEEEEeccCceEEE---------
Confidence 7 46899999998665443 568899999999999999 999999999999999999887632
Q ss_pred cCCCccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEc
Q 010206 330 EAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 408 (515)
Q Consensus 330 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 408 (515)
++..|++.|+.+.|+..|+.+++.+ ||+|+.||+.. .+..+++..+.... ..+++..
T Consensus 387 -------TFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR-YrNfRTft~P~p~Q--------------fscvavD 444 (893)
T KOG0291|consen 387 -------TFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR-YRNFRTFTSPEPIQ--------------FSCVAVD 444 (893)
T ss_pred -------EeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc-cceeeeecCCCcee--------------eeEEEEc
Confidence 2677889999999999999999987 59999999997 88888887765431 2378999
Q ss_pred CCCCEEEEecCCC-cEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCcccccc
Q 010206 409 GDGGRVATGSYSN-LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFS 487 (515)
Q Consensus 409 ~~~~~l~s~s~dg-~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~ 487 (515)
|.|.+++.|+.|. .|.+|++++| +++..|.+|..||..+.|+|.+..|+|+|+|++||+ |.........+.+.+.
T Consensus 445 ~sGelV~AG~~d~F~IfvWS~qTG-qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRi---W~if~s~~~vEtl~i~ 520 (893)
T KOG0291|consen 445 PSGELVCAGAQDSFEIFVWSVQTG-QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRI---WDIFSSSGTVETLEIR 520 (893)
T ss_pred CCCCEEEeeccceEEEEEEEeecC-eeeehhcCCCCcceeeEEccccCeEEeccccceEEE---EEeeccCceeeeEeec
Confidence 9999999999776 7999999998 677899999999999999999999999999999999 3333222233455567
Q ss_pred CCeeEEEEcCCCCEEEEEcCC-cEEEEeC
Q 010206 488 MKLLHLAWHPSENSIACAASN-SLYMYYA 515 (515)
Q Consensus 488 ~~i~~~~~s~~~~~la~~~~~-~~~i~~~ 515 (515)
..++.++|+|||+.||+++-+ .+-+|++
T Consensus 521 sdvl~vsfrPdG~elaVaTldgqItf~d~ 549 (893)
T KOG0291|consen 521 SDVLAVSFRPDGKELAVATLDGQITFFDI 549 (893)
T ss_pred cceeEEEEcCCCCeEEEEEecceEEEEEh
Confidence 899999999999999999977 5777753
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.4e-40 Score=267.50 Aligned_cols=293 Identities=16% Similarity=0.217 Sum_probs=245.5
Q ss_pred eeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCC
Q 010206 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (515)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (515)
...+++|. .+|.++.| ..|.+++++++.||.+.|||..+........+. ...|-
T Consensus 48 rr~LkGH~------------~Ki~~~~w--s~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~--------s~WVM---- 101 (343)
T KOG0286|consen 48 RRTLKGHL------------NKIYAMDW--STDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP--------SSWVM---- 101 (343)
T ss_pred EEEecccc------------cceeeeEe--cCCcCeEEeeccCCeEEEEEcccccceeEEecC--------ceeEE----
Confidence 35689998 99999999 567789999999999999999887666655544 44554
Q ss_pred cCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe
Q 010206 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 252 (515)
Q Consensus 173 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 252 (515)
..+|+|.|+.+ +.|+-|+.-.||+ +...+..-. ......+.+|.+.+.|+.|-+|+++|.++
T Consensus 102 ---tCA~sPSg~~V------------AcGGLdN~Csiy~--ls~~d~~g~-~~v~r~l~gHtgylScC~f~dD~~ilT~S 163 (343)
T KOG0286|consen 102 ---TCAYSPSGNFV------------ACGGLDNKCSIYP--LSTRDAEGN-VRVSRELAGHTGYLSCCRFLDDNHILTGS 163 (343)
T ss_pred ---EEEECCCCCeE------------EecCcCceeEEEe--ccccccccc-ceeeeeecCccceeEEEEEcCCCceEecC
Confidence 77999999998 9999999999999 443322211 22233368999999999999876555444
Q ss_pred CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCC
Q 010206 253 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 332 (515)
Q Consensus 253 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 332 (515)
.|.++.+||++++++.. .+.+|.+.|.++.++|..++.|++|+-|+..++||+|.+..+.
T Consensus 164 GD~TCalWDie~g~~~~--------~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~q------------ 223 (343)
T KOG0286|consen 164 GDMTCALWDIETGQQTQ--------VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQ------------ 223 (343)
T ss_pred CCceEEEEEcccceEEE--------EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeE------------
Confidence 89999999999887653 6789999999999999334999999999999999999986532
Q ss_pred CccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCC
Q 010206 333 GTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 411 (515)
Q Consensus 333 ~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 411 (515)
.|.+|.+.|+++.|.|+|.-+++|+| ++.++||++. .+.+..+... ..+.+|++++||..|
T Consensus 224 ----tF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRa-D~~~a~ys~~-------------~~~~gitSv~FS~SG 285 (343)
T KOG0286|consen 224 ----TFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRA-DQELAVYSHD-------------SIICGITSVAFSKSG 285 (343)
T ss_pred ----eecccccccceEEEccCCCeeeecCCCceeEEEeecC-CcEEeeeccC-------------cccCCceeEEEcccc
Confidence 37788899999999999999999987 9999999996 7777777632 234457899999999
Q ss_pred CEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 412 GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 412 ~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
++|++|..|..+.+||.-.+ .....|.+|.+.|.++..+|||.-+++||+|.++||
T Consensus 286 RlLfagy~d~~c~vWDtlk~-e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lri 341 (343)
T KOG0286|consen 286 RLLFAGYDDFTCNVWDTLKG-ERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRI 341 (343)
T ss_pred cEEEeeecCCceeEeecccc-ceEEEeeccCCeeEEEEECCCCcEEEecchhHheee
Confidence 99999999999999998766 566899999999999999999999999999999998
No 11
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.2e-38 Score=253.56 Aligned_cols=299 Identities=14% Similarity=0.223 Sum_probs=237.3
Q ss_pred cccccccceEEEEECCC-CCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccc
Q 010206 30 EEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~-g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (515)
...+|.+.|+.++..+. .+.+++++.|..+.+|++...... .......+.||+
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~------------------~G~~~r~~~GHs-------- 63 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK------------------YGVPVRRLTGHS-------- 63 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc------------------cCceeeeeeccc--------
Confidence 45689999999999996 568889999999999998765431 334567788888
Q ss_pred ccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccc
Q 010206 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (515)
Q Consensus 109 ~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~ 188 (515)
..|..+.. ++++++.++++.|+++++||+.+++....+..+.. .+. +++|++|.+.+
T Consensus 64 ----H~v~dv~~--s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~--------dVl-------sva~s~dn~qi-- 120 (315)
T KOG0279|consen 64 ----HFVSDVVL--SSDGNFALSASWDGTLRLWDLATGESTRRFVGHTK--------DVL-------SVAFSTDNRQI-- 120 (315)
T ss_pred ----eEecceEE--ccCCceEEeccccceEEEEEecCCcEEEEEEecCC--------ceE-------EEEecCCCcee--
Confidence 78999999 66788999999999999999999877666665532 233 88999999999
Q ss_pred ccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeee-ccCcCCeEEEEecCC--CCEEEEe-CCCcEEEEeCCC
Q 010206 189 NFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYA-HAHDYHINSISNNSD--GETFISA-DDLRINLWNLEI 264 (515)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~ 264 (515)
++|+.|.+|++|+ ... .+..+.. ..+...|.|+.|+|+ ..+|+++ .|++|++||+++
T Consensus 121 ----------vSGSrDkTiklwn--t~g-------~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~ 181 (315)
T KOG0279|consen 121 ----------VSGSRDKTIKLWN--TLG-------VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN 181 (315)
T ss_pred ----------ecCCCcceeeeee--ecc-------cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC
Confidence 9999999999999 222 2222222 233789999999998 6788887 899999999986
Q ss_pred CCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccc
Q 010206 265 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 344 (515)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (515)
-+... .+.+|++.++.++++||| .++++|+.||.+.+||++.++.+ +. .+|...
T Consensus 182 ~~l~~--------~~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k~l----ys-------------l~a~~~ 235 (315)
T KOG0279|consen 182 CQLRT--------TFIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGKNL----YS-------------LEAFDI 235 (315)
T ss_pred cchhh--------ccccccccEEEEEECCCC-CEEecCCCCceEEEEEccCCcee----Ee-------------ccCCCe
Confidence 55432 678899999999999999 99999999999999999988753 22 334478
Q ss_pred eeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEE
Q 010206 345 ISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 424 (515)
Q Consensus 345 i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~ 424 (515)
|.+++|+|+.-.|+.+.+..|+|||+.. +..+..+....... ........ ..+++|++||+.|++|-.|+.|+
T Consensus 236 v~sl~fspnrywL~~at~~sIkIwdl~~-~~~v~~l~~d~~g~--s~~~~~~~----clslaws~dG~tLf~g~td~~ir 308 (315)
T KOG0279|consen 236 VNSLCFSPNRYWLCAATATSIKIWDLES-KAVVEELKLDGIGP--SSKAGDPI----CLSLAWSADGQTLFAGYTDNVIR 308 (315)
T ss_pred EeeEEecCCceeEeeccCCceEEEeccc-hhhhhhcccccccc--ccccCCcE----EEEEEEcCCCcEEEeeecCCcEE
Confidence 9999999998888888887899999996 77776665433211 00000001 24799999999999999999999
Q ss_pred EEecC
Q 010206 425 VFGCS 429 (515)
Q Consensus 425 iw~~~ 429 (515)
+|.+.
T Consensus 309 v~qv~ 313 (315)
T KOG0279|consen 309 VWQVA 313 (315)
T ss_pred EEEee
Confidence 99875
No 12
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=7.4e-37 Score=268.52 Aligned_cols=386 Identities=14% Similarity=0.198 Sum_probs=286.7
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecc---cCCCcccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ---SHEPEFDYLK 107 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~~~~~~ 107 (515)
...|..-|.|+.|+|||+++|+.+.||.|.+||=.+++.+ ..+. +|.
T Consensus 186 ~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~v-----------------------g~l~~~~aHk------- 235 (603)
T KOG0318|consen 186 FREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKV-----------------------GELEDSDAHK------- 235 (603)
T ss_pred ccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEE-----------------------EEecCCCCcc-------
Confidence 3468999999999999999999999999999998888754 3333 677
Q ss_pred cccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccc
Q 010206 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (515)
Q Consensus 108 ~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~ 187 (515)
+.|.++.| +||+..+++++.|.++++||+.+.++.....+..... ..+- ...
T Consensus 236 -----GsIfalsW--sPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~-dqqv-----------G~l--------- 287 (603)
T KOG0318|consen 236 -----GSIFALSW--SPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVE-DQQV-----------GCL--------- 287 (603)
T ss_pred -----ccEEEEEE--CCCCceEEEecCCceEEEEEeeccceEEEeecCCchh-ceEE-----------EEE---------
Confidence 99999999 5678899999999999999999998777665542210 0000 111
Q ss_pred cccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCC
Q 010206 188 RNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 266 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~ 266 (515)
+.+|.+++-+.+|.|.+++ ..+.+ ..+. +.+|...|+++..++++++|.+| .||.|.-||..++.
T Consensus 288 -----Wqkd~lItVSl~G~in~ln--~~d~~------~~~~-i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~ 353 (603)
T KOG0318|consen 288 -----WQKDHLITVSLSGTINYLN--PSDPS------VLKV-ISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGT 353 (603)
T ss_pred -----EeCCeEEEEEcCcEEEEec--ccCCC------hhhe-ecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcc
Confidence 2244447888889999877 22222 2222 48999999999999999999999 79999999998776
Q ss_pred cccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccc-------cceeeeccCC-------
Q 010206 267 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH-------SKLFEEQEAP------- 332 (515)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-------~~~~~~~~~~------- 332 (515)
...- .-+.|...|.+++.+..+ .+++.+.|.++++.++......... .+.+......
T Consensus 354 ~~~~-------~g~~h~nqI~~~~~~~~~--~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~ 424 (603)
T KOG0318|consen 354 SDRL-------AGKGHTNQIKGMAASESG--ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVAC 424 (603)
T ss_pred cccc-------ccccccceEEEEeecCCC--cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEe
Confidence 4411 126699999999998765 6788999999999987544321110 0001000000
Q ss_pred -Cccccccc--------cccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCC--eeeEeeeccccccccccccCCCcc
Q 010206 333 -GTRSFFTE--------IIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGP--VATFQVHEHLRPKLCDLYENDSIF 400 (515)
Q Consensus 333 -~~~~~~~~--------~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 400 (515)
....++.. ..-...+++++|++..++.|.. +.|+||.+.- ... ...+..|...
T Consensus 425 ~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g-~~l~ee~~~~~h~a~-------------- 489 (603)
T KOG0318|consen 425 ISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSG-DELKEEAKLLEHRAA-------------- 489 (603)
T ss_pred cCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecC-CcccceeeeecccCC--------------
Confidence 00011111 1234678999999999999875 9999999984 332 2234444443
Q ss_pred ceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccC
Q 010206 401 DKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDAN 480 (515)
Q Consensus 401 ~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~ 480 (515)
++.+++|||+.|||+|...+.+.+||+.+.......+--|...|.+++|+|+.+.+|+||.|-.|.+++-.++.. ..
T Consensus 490 -iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~--~i 566 (603)
T KOG0318|consen 490 -ITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAK--HI 566 (603)
T ss_pred -ceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhh--he
Confidence 569999999999999999999999999988665566778999999999999999999999999999966666653 22
Q ss_pred CccccccCCeeEEEEcCCCCEEEEEcCCcEEEEeC
Q 010206 481 GNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 515 (515)
Q Consensus 481 ~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~i~~~ 515 (515)
...-.|...|+.++|-.+...+-+|.+-.+.+|+.
T Consensus 567 ~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 567 IIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNV 601 (603)
T ss_pred EeccccccCceeEEEecCceEEeccCcceeEEecc
Confidence 22235777799999988777777888888999973
No 13
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.8e-37 Score=246.99 Aligned_cols=267 Identities=15% Similarity=0.223 Sum_probs=217.2
Q ss_pred CeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEEEeecCCCc
Q 010206 48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSA 127 (515)
Q Consensus 48 ~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~ 127 (515)
-+||+++.|.+|++|...++.. ..+++..+ ..|+.+.. .+++.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C-----------------------~rTiqh~d------------sqVNrLei--Tpdk~ 53 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGIC-----------------------SRTIQHPD------------SQVNRLEI--TPDKK 53 (311)
T ss_pred eEEEeccCcceeeeeehhcCeE-----------------------EEEEecCc------------cceeeEEE--cCCcc
Confidence 4899999999999999998874 45555554 77999999 55666
Q ss_pred EEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccE
Q 010206 128 LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSL 207 (515)
Q Consensus 128 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i 207 (515)
.|++++. ..||+||+++++...+
T Consensus 54 ~LAaa~~-qhvRlyD~~S~np~Pv-------------------------------------------------------- 76 (311)
T KOG0315|consen 54 DLAAAGN-QHVRLYDLNSNNPNPV-------------------------------------------------------- 76 (311)
T ss_pred hhhhccC-CeeEEEEccCCCCCce--------------------------------------------------------
Confidence 7777665 6799999988753221
Q ss_pred EeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCce
Q 010206 208 RLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVI 286 (515)
Q Consensus 208 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 286 (515)
.. ..+|...|.++.|..+|+++.+| +||+++|||++..... ....|..+|
T Consensus 77 -------------------~t-~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q---------R~~~~~spV 127 (311)
T KOG0315|consen 77 -------------------AT-FEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ---------RNYQHNSPV 127 (311)
T ss_pred -------------------eE-EeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccc---------hhccCCCCc
Confidence 11 35788999999999999999999 8999999999975433 334578999
Q ss_pred EEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeE
Q 010206 287 TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTL 365 (515)
Q Consensus 287 ~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i 365 (515)
+++..+|+. ..|++|..+|.|++||+.+.....+. +..-..+|.++...|||.+|+++.. |..
T Consensus 128 n~vvlhpnQ-teLis~dqsg~irvWDl~~~~c~~~l---------------iPe~~~~i~sl~v~~dgsml~a~nnkG~c 191 (311)
T KOG0315|consen 128 NTVVLHPNQ-TELISGDQSGNIRVWDLGENSCTHEL---------------IPEDDTSIQSLTVMPDGSMLAAANNKGNC 191 (311)
T ss_pred ceEEecCCc-ceEEeecCCCcEEEEEccCCcccccc---------------CCCCCcceeeEEEcCCCcEEEEecCCccE
Confidence 999999997 89999999999999999886432211 1111257999999999999999987 999
Q ss_pred EEEEeeC-----CCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeecc
Q 010206 366 KLWDINM-----DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA 440 (515)
Q Consensus 366 ~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~ 440 (515)
++|++-. .-.++..++.|... +..+.+|||+++||++|.|.+++||+.++.-++...+++
T Consensus 192 yvW~l~~~~~~s~l~P~~k~~ah~~~---------------il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~g 256 (311)
T KOG0315|consen 192 YVWRLLNHQTASELEPVHKFQAHNGH---------------ILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTG 256 (311)
T ss_pred EEEEccCCCccccceEhhheecccce---------------EEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeec
Confidence 9999864 12345556666654 458999999999999999999999999876345578899
Q ss_pred CCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 441 SKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 441 ~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
|...+...+||.+++||++|+.|+.+++
T Consensus 257 h~rWvWdc~FS~dg~YlvTassd~~~rl 284 (311)
T KOG0315|consen 257 HQRWVWDCAFSADGEYLVTASSDHTARL 284 (311)
T ss_pred CCceEEeeeeccCccEEEecCCCCceee
Confidence 9999999999999999999999999999
No 14
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.6e-36 Score=273.42 Aligned_cols=403 Identities=15% Similarity=0.213 Sum_probs=290.7
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
...+|+++|-++-|..+...|.+-+.||.+.+|.......... ...-+..+.. .-+..-..+-..|...+.-.+..
T Consensus 184 ~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~-~~~kd~eg~~---d~~~~~~~Eek~~~~~~~k~~k~ 259 (893)
T KOG0291|consen 184 ALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELD-KAEKDEEGSD---DEEMDEDGEEKTHKIFWYKTKKH 259 (893)
T ss_pred eccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccc-cccccccccc---cccccccchhhhcceEEEEEEee
Confidence 3468999999999999999999999999999999873321100 0000000000 00000000000000000000000
Q ss_pred ---cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcc
Q 010206 110 ---EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (515)
Q Consensus 110 ---~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l 186 (515)
.-...|++.+|++. ...|+++-..|...+|.+..-.+......... .+. .++++..|..+
T Consensus 260 ~ln~~~~kvtaa~fH~~--t~~lvvgFssG~f~LyelP~f~lih~LSis~~--------~I~-------t~~~N~tGDWi 322 (893)
T KOG0291|consen 260 YLNQNSSKVTAAAFHKG--TNLLVVGFSSGEFGLYELPDFNLIHSLSISDQ--------KIL-------TVSFNSTGDWI 322 (893)
T ss_pred eecccccceeeeeccCC--ceEEEEEecCCeeEEEecCCceEEEEeecccc--------eee-------EEEecccCCEE
Confidence 01267999999664 44889998999999999999887776665422 222 67788888887
Q ss_pred ccccccCCCCCCCCCCC-cccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCC
Q 010206 187 ERNFGCASNDSSFPPGG-VSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI 264 (515)
Q Consensus 187 ~~~~~~~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~ 264 (515)
+.|+. -|.+.+|+ |..+.... . .++|...+.+++++|||+++++| +||.|++||...
T Consensus 323 ------------A~g~~klgQLlVwe---WqsEsYVl-----K-QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S 381 (893)
T KOG0291|consen 323 ------------AFGCSKLGQLLVWE---WQSESYVL-----K-QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS 381 (893)
T ss_pred ------------EEcCCccceEEEEE---eeccceee-----e-ccccccceeeEEECCCCcEEEeccCCCcEEEEeccC
Confidence 55554 48999998 43333111 1 36899999999999999999999 899999999987
Q ss_pred CCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccc
Q 010206 265 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 344 (515)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (515)
+-+.. ++..|+..|+.+.|+..+ +.+++.+.||+|+.||+..... .++|..++. ..
T Consensus 382 gfC~v--------TFteHts~Vt~v~f~~~g-~~llssSLDGtVRAwDlkRYrN----fRTft~P~p-----------~Q 437 (893)
T KOG0291|consen 382 GFCFV--------TFTEHTSGVTAVQFTARG-NVLLSSSLDGTVRAWDLKRYRN----FRTFTSPEP-----------IQ 437 (893)
T ss_pred ceEEE--------EeccCCCceEEEEEEecC-CEEEEeecCCeEEeeeecccce----eeeecCCCc-----------ee
Confidence 65543 778899999999999999 9999999999999999977643 345554432 34
Q ss_pred eeEEEEccCCCEEEEEc-C-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCc
Q 010206 345 ISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 422 (515)
Q Consensus 345 i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~ 422 (515)
..|++..|.|..+.+|+ | -.|.+|++.+ ++.+..+.+|+++ |.+++|+|++..|+++|.|.+
T Consensus 438 fscvavD~sGelV~AG~~d~F~IfvWS~qT-GqllDiLsGHEgP---------------Vs~l~f~~~~~~LaS~SWDkT 501 (893)
T KOG0291|consen 438 FSCVAVDPSGELVCAGAQDSFEIFVWSVQT-GQLLDILSGHEGP---------------VSGLSFSPDGSLLASGSWDKT 501 (893)
T ss_pred eeEEEEcCCCCEEEeeccceEEEEEEEeec-CeeeehhcCCCCc---------------ceeeEEccccCeEEeccccce
Confidence 67889999999999986 4 7899999998 9999999999988 448999999999999999999
Q ss_pred EEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEe-----------cCCC------CCccccCCcccc
Q 010206 423 FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRV-----------KGAD------NSALDANGNAFD 485 (515)
Q Consensus 423 i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~-----------~~~~------~~~~~~~~~~~~ 485 (515)
|++||+-.......++ .+...+..+.|.|+|+-|+++..||.|.++ +|.+ .....+..+.-.
T Consensus 502 VRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa 580 (893)
T KOG0291|consen 502 VRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSA 580 (893)
T ss_pred EEEEEeeccCceeeeE-eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcc
Confidence 9999997653343333 456678899999999999999999999981 1111 111111122223
Q ss_pred ccCCeeEEEEcCCCCEEEEEc-CCcEEEEeC
Q 010206 486 FSMKLLHLAWHPSENSIACAA-SNSLYMYYA 515 (515)
Q Consensus 486 ~~~~i~~~~~s~~~~~la~~~-~~~~~i~~~ 515 (515)
-....+.+.+|+||+.|++|+ .+.++||++
T Consensus 581 ~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v 611 (893)
T KOG0291|consen 581 KGKTFTTICYSADGKCILAGGESNSICIYDV 611 (893)
T ss_pred cCCceEEEEEcCCCCEEEecCCcccEEEEEC
Confidence 346789999999999988776 567999874
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.2e-37 Score=249.33 Aligned_cols=287 Identities=19% Similarity=0.319 Sum_probs=228.4
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
...+|.+.|.++.|++|.++|++++.||.+.|||.-+..+. ..+.-..
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~-----------------------haipl~s--------- 97 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV-----------------------HAIPLPS--------- 97 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce-----------------------eEEecCc---------
Confidence 35689999999999999999999999999999997665432 1111112
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCee----EEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV----KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 185 (515)
..|...+|+|+ +++++.|+-|+...||++.+.+. .....+..+ .+.+. ...|.+|+..
T Consensus 98 ---~WVMtCA~sPS--g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gH------tgylS-------cC~f~dD~~i 159 (343)
T KOG0286|consen 98 ---SWVMTCAYSPS--GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGH------TGYLS-------CCRFLDDNHI 159 (343)
T ss_pred ---eeEEEEEECCC--CCeEEecCcCceeEEEecccccccccceeeeeecCc------cceeE-------EEEEcCCCce
Confidence 77999999665 66999999999999999985521 111111111 12222 4556665554
Q ss_pred cccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC-CCCEEEEe-CCCcEEEEeCC
Q 010206 186 GERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLE 263 (515)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~ 263 (515)
++++.|.+..+|| +.. ++.... +.+|.+.|.+++++| +++.|++| .|+..++||++
T Consensus 160 -------------lT~SGD~TCalWD--ie~------g~~~~~-f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R 217 (343)
T KOG0286|consen 160 -------------LTGSGDMTCALWD--IET------GQQTQV-FHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVR 217 (343)
T ss_pred -------------EecCCCceEEEEE--ccc------ceEEEE-ecCCcccEEEEecCCCCCCeEEecccccceeeeecc
Confidence 8999999999999 333 333334 479999999999999 99999998 79999999999
Q ss_pred CCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccc
Q 010206 264 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 343 (515)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (515)
.+.... .+.+|...|++++|.|+| .-|++|+.|++.|+||+|..+.+. .|... ....
T Consensus 218 ~~~c~q--------tF~ghesDINsv~ffP~G-~afatGSDD~tcRlyDlRaD~~~a----~ys~~----------~~~~ 274 (343)
T KOG0286|consen 218 SGQCVQ--------TFEGHESDINSVRFFPSG-DAFATGSDDATCRLYDLRADQELA----VYSHD----------SIIC 274 (343)
T ss_pred CcceeE--------eecccccccceEEEccCC-CeeeecCCCceeEEEeecCCcEEe----eeccC----------cccC
Confidence 875442 789999999999999999 999999999999999999876532 22211 1226
Q ss_pred ceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCc
Q 010206 344 SISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 422 (515)
Q Consensus 344 ~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~ 422 (515)
+|++++||..|++|++|- |.++.+||.-. ++.+..+.+|++. |.++..+|||.-|+|||.|..
T Consensus 275 gitSv~FS~SGRlLfagy~d~~c~vWDtlk-~e~vg~L~GHeNR---------------vScl~~s~DG~av~TgSWDs~ 338 (343)
T KOG0286|consen 275 GITSVAFSKSGRLLFAGYDDFTCNVWDTLK-GERVGVLAGHENR---------------VSCLGVSPDGMAVATGSWDST 338 (343)
T ss_pred CceeEEEcccccEEEeeecCCceeEeeccc-cceEEEeeccCCe---------------eEEEEECCCCcEEEecchhHh
Confidence 899999999999999975 49999999986 8888999999876 559999999999999999999
Q ss_pred EEEEe
Q 010206 423 FRVFG 427 (515)
Q Consensus 423 i~iw~ 427 (515)
++||.
T Consensus 339 lriW~ 343 (343)
T KOG0286|consen 339 LRIWA 343 (343)
T ss_pred eeecC
Confidence 99994
No 16
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8.2e-37 Score=264.68 Aligned_cols=283 Identities=19% Similarity=0.358 Sum_probs=234.1
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
...-...|++++|+.+|..||+|+.||.++||+..... ..++..|.
T Consensus 231 s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l------------------------~~tl~~Hk---------- 276 (524)
T KOG0273|consen 231 SVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL------------------------ISTLGQHK---------- 276 (524)
T ss_pred cCCccCCcceEEecCCCCeEEEeecCcEEEEEecCchh------------------------hhhhhccC----------
Confidence 44556789999999999999999999999999976543 35678888
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
++|.++.| +..|.+|++++.|+++.+||..++.....+.++..+. + .+.|-.+
T Consensus 277 --gPI~slKW--nk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~-------l--------DVdW~~~-------- 329 (524)
T KOG0273|consen 277 --GPIFSLKW--NKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPA-------L--------DVDWQSN-------- 329 (524)
T ss_pred --CceEEEEE--cCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCc-------c--------ceEEecC--------
Confidence 99999999 6778899999999999999999999888877663320 0 2333333
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
+-+++.+.++.|+++.| .. ..+..++ .+|.+.|.++.|+|.+.+|+++ +|++++||.........
T Consensus 330 -----~~F~ts~td~~i~V~kv--~~------~~P~~t~-~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~ 395 (524)
T KOG0273|consen 330 -----DEFATSSTDGCIHVCKV--GE------DRPVKTF-IGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH 395 (524)
T ss_pred -----ceEeecCCCceEEEEEe--cC------CCcceee-ecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchh
Confidence 33488999999999883 22 2233443 6799999999999999999999 89999999987555432
Q ss_pred ceecccCccccccCCceEEEEEecCCC--------cEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccc
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHC--------NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 341 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~--------~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (515)
.+.+|...|+.+.|+|+|+ ..+++++.|+++++||+..+..+. .+..|
T Consensus 396 --------~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~----------------~f~kH 451 (524)
T KOG0273|consen 396 --------DLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIH----------------TLMKH 451 (524)
T ss_pred --------hhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeE----------------eeccC
Confidence 6788999999999999764 479999999999999999887643 26678
Q ss_pred ccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCC
Q 010206 342 IASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 420 (515)
Q Consensus 342 ~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d 420 (515)
..+|++++|+|+|+++++|+- |.|.+|+.+. ++.++.+.+... |+.++|+.+|.+|..+-.|
T Consensus 452 ~~pVysvafS~~g~ylAsGs~dg~V~iws~~~-~~l~~s~~~~~~----------------Ifel~Wn~~G~kl~~~~sd 514 (524)
T KOG0273|consen 452 QEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT-GKLVKSYQGTGG----------------IFELCWNAAGDKLGACASD 514 (524)
T ss_pred CCceEEEEecCCCcEEEecCCCCeeEeccccc-hheeEeecCCCe----------------EEEEEEcCCCCEEEEEecC
Confidence 899999999999999999985 9999999997 888888876543 4589999999999999999
Q ss_pred CcEEEEecC
Q 010206 421 NLFRVFGCS 429 (515)
Q Consensus 421 g~i~iw~~~ 429 (515)
+.+.+-|++
T Consensus 515 ~~vcvldlr 523 (524)
T KOG0273|consen 515 GSVCVLDLR 523 (524)
T ss_pred CCceEEEec
Confidence 999998875
No 17
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.5e-38 Score=269.22 Aligned_cols=278 Identities=19% Similarity=0.310 Sum_probs=240.3
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccce
Q 010206 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (515)
Q Consensus 35 ~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (515)
.-+|..|.|.|+|+.|++|+..|.+.+|+.. .+.+...+++|+ ..
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~-----------------------~fnFEtilQaHD------------s~ 140 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGT-----------------------SFNFETILQAHD------------SP 140 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCc-----------------------eeeHHHHhhhhc------------cc
Confidence 4589999999999999999999999999964 334556788998 99
Q ss_pred eEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCC
Q 010206 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (515)
Q Consensus 115 v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~ 194 (515)
|+++.| +.++.++++|..+|.|++|+......+.
T Consensus 141 Vr~m~w--s~~g~wmiSgD~gG~iKyWqpnmnnVk~-------------------------------------------- 174 (464)
T KOG0284|consen 141 VRTMKW--SHNGTWMISGDKGGMIKYWQPNMNNVKI-------------------------------------------- 174 (464)
T ss_pred ceeEEE--ccCCCEEEEcCCCceEEecccchhhhHH--------------------------------------------
Confidence 999999 5567799999999999999876432110
Q ss_pred CCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceec
Q 010206 195 NDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 273 (515)
Q Consensus 195 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~ 273 (515)
+...|...|++++|+|....|+++ +||+|+|||....++..
T Consensus 175 ----------------------------------~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~---- 216 (464)
T KOG0284|consen 175 ----------------------------------IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEER---- 216 (464)
T ss_pred ----------------------------------hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhh----
Confidence 013455899999999999999998 89999999998776543
Q ss_pred ccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccC
Q 010206 274 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 353 (515)
Q Consensus 274 ~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 353 (515)
.+.+|.-.|.+++|+|.- .++++|+.|..|++||.+++.++.. +.+|+..|..+.|+|+
T Consensus 217 ----vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl~t----------------lh~HKntVl~~~f~~n 275 (464)
T KOG0284|consen 217 ----VLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCLAT----------------LHGHKNTVLAVKFNPN 275 (464)
T ss_pred ----eeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcchhhh----------------hhhccceEEEEEEcCC
Confidence 668999999999999997 8999999999999999999987543 6788899999999999
Q ss_pred CCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCC-CCEEEEecCCCcEEEEecCCC
Q 010206 354 GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 354 ~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~s~dg~i~iw~~~~~ 431 (515)
+++|++++. ..++++|+++ .+.+.++++|... |+++.|+|- ..+|.+|+.||.|..|.+...
T Consensus 276 ~N~Llt~skD~~~kv~DiR~-mkEl~~~r~Hkkd---------------v~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~ 339 (464)
T KOG0284|consen 276 GNWLLTGSKDQSCKVFDIRT-MKELFTYRGHKKD---------------VTSLTWHPLNESLFTSGGSDGSVVHWVVGLE 339 (464)
T ss_pred CCeeEEccCCceEEEEehhH-hHHHHHhhcchhh---------------heeeccccccccceeeccCCCceEEEecccc
Confidence 999999875 9999999996 8889999999866 569999994 567889999999999999855
Q ss_pred CcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 432 SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 432 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+.+...-.+|...|++++++|-|..|++|+.|.++++
T Consensus 340 ~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rf 376 (464)
T KOG0284|consen 340 EPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRF 376 (464)
T ss_pred ccccCCCcccccceeeeeccccceeEeecCCCcceee
Confidence 5555666799999999999999999999999999999
No 18
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2e-36 Score=276.30 Aligned_cols=382 Identities=14% Similarity=0.169 Sum_probs=291.4
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeeccc-CCCcccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQS-HEPEFDYLKSL 109 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~ 109 (515)
..+..+.+++++.+||+++|++++....+++|++.+++. ..++.. |+
T Consensus 58 ~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~-----------------------irswKa~He--------- 105 (775)
T KOG0319|consen 58 SNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKL-----------------------IRSWKAIHE--------- 105 (775)
T ss_pred CccchhhhheeeecCCccEEEEeeccceEEEEEcccchH-----------------------hHhHhhccC---------
Confidence 345567899999999999999999999999999988764 355666 77
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
.+|.-++|.| .+..+++|+.|+.+++||+..+.+...+... .|.+. ++.|.|+-..
T Consensus 106 ---~Pvi~ma~~~--~g~LlAtggaD~~v~VWdi~~~~~th~fkG~--------gGvVs-------sl~F~~~~~~---- 161 (775)
T KOG0319|consen 106 ---APVITMAFDP--TGTLLATGGADGRVKVWDIKNGYCTHSFKGH--------GGVVS-------SLLFHPHWNR---- 161 (775)
T ss_pred ---CCeEEEEEcC--CCceEEeccccceEEEEEeeCCEEEEEecCC--------CceEE-------EEEeCCccch----
Confidence 8999999955 4579999999999999999999888777665 23443 6777776654
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
.++++|..|+.+++|| +..... +... +..|...|++++|++|+..++++ .|..+.+||+.+-+..
T Consensus 162 ------~lL~sg~~D~~v~vwn--l~~~~t-----cl~~-~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l 227 (775)
T KOG0319|consen 162 ------WLLASGATDGTVRVWN--LNDKRT-----CLHT-MILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKL 227 (775)
T ss_pred ------hheeecCCCceEEEEE--cccCch-----HHHH-HHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhh
Confidence 2349999999999999 442222 2222 47899999999999998888886 7888999987532000
Q ss_pred --------------------------------------------------------------------------------
Q 010206 269 -------------------------------------------------------------------------------- 268 (515)
Q Consensus 269 -------------------------------------------------------------------------------- 268 (515)
T Consensus 228 ~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l 307 (775)
T KOG0319|consen 228 KTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFL 307 (775)
T ss_pred heechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEE
Confidence
Q ss_pred ----------------------------------------cceecc---cCccccccCCceEEEEEecCCCcEEEEEecC
Q 010206 269 ----------------------------------------FNIVDV---KPANMEDLTEVITSAEFHPTHCNMLAYSSSK 305 (515)
Q Consensus 269 ----------------------------------------~~~~~~---~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d 305 (515)
.++.+. ...-+.+|.+.|.++....+| .+|++|+.|
T Consensus 308 ~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD 386 (775)
T KOG0319|consen 308 YDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKD 386 (775)
T ss_pred EEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-cEEEEecCC
Confidence 000000 112356888899999866666 799999999
Q ss_pred CeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCC-CEEEEEc-CCeEEEEEeeCC--CCCee---
Q 010206 306 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILSRD-YMTLKLWDINMD--SGPVA--- 378 (515)
Q Consensus 306 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~s~~-~~~i~iwd~~~~--~~~~~--- 378 (515)
.++++|.+.++...... .....+|...|.+++++..+ .+|++++ |+++++|++... .....
T Consensus 387 ~svilWr~~~~~~~~~~------------~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~ 454 (775)
T KOG0319|consen 387 KSVILWRLNNNCSKSLC------------VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLT 454 (775)
T ss_pred ceEEEEEecCCcchhhh------------hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceeh
Confidence 99999998544321100 11257788999999998754 4677765 599999999751 11111
Q ss_pred ---eEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCC
Q 010206 379 ---TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP 455 (515)
Q Consensus 379 ---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 455 (515)
+...|+. +|.+++++|+.+++||||.|.+.+||+++.. .+..+|.+|...+.++.|+|..+
T Consensus 455 ~~~t~~aHdK---------------dIN~Vaia~ndkLiAT~SqDktaKiW~le~~-~l~~vLsGH~RGvw~V~Fs~~dq 518 (775)
T KOG0319|consen 455 CRYTERAHDK---------------DINCVAIAPNDKLIATGSQDKTAKIWDLEQL-RLLGVLSGHTRGVWCVSFSKNDQ 518 (775)
T ss_pred hhHHHHhhcc---------------cccceEecCCCceEEecccccceeeecccCc-eEEEEeeCCccceEEEEeccccc
Confidence 1122332 2559999999999999999999999999955 66699999999999999999999
Q ss_pred eeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCc-EEEEe
Q 010206 456 SRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS-LYMYY 514 (515)
Q Consensus 456 ~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~-~~i~~ 514 (515)
.++++|.|++|+| |.+....-..+.-+|...|..++|-.+++.|++++.+| +.+|+
T Consensus 519 ~laT~SgD~TvKI---W~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 519 LLATCSGDKTVKI---WSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWN 575 (775)
T ss_pred eeEeccCCceEEE---EEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence 9999999999999 55543334445557999999999999999999888777 78886
No 19
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.2e-36 Score=242.83 Aligned_cols=293 Identities=18% Similarity=0.244 Sum_probs=229.0
Q ss_pred eeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCC
Q 010206 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (515)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (515)
...++.+|. +.|+.++..+. +.+.+++++.|.++.+|++......
T Consensus 7 l~~tl~gh~------------d~Vt~la~~~~-~~~~l~sasrDk~ii~W~L~~dd~~---------------------- 51 (315)
T KOG0279|consen 7 LRGTLEGHT------------DWVTALAIKIK-NSDILVSASRDKTIIVWKLTSDDIK---------------------- 51 (315)
T ss_pred eeeeecCCC------------ceEEEEEeecC-CCceEEEcccceEEEEEEeccCccc----------------------
Confidence 445688898 88999999876 4568999999999999998764200
Q ss_pred CcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEE
Q 010206 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 251 (515)
Q Consensus 172 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 251 (515)
.+.+.+. +.+|...|..+..++|+++.++
T Consensus 52 --------------------------------------------------~G~~~r~-~~GHsH~v~dv~~s~dg~~alS 80 (315)
T KOG0279|consen 52 --------------------------------------------------YGVPVRR-LTGHSHFVSDVVLSSDGNFALS 80 (315)
T ss_pred --------------------------------------------------cCceeee-eeccceEecceEEccCCceEEe
Confidence 0122223 4789999999999999999999
Q ss_pred e-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeecc
Q 010206 252 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 330 (515)
Q Consensus 252 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 330 (515)
+ .|+++++||+.+++... .+.+|...|.+++|+||+ +.+++|+.|.+|++|++...... ...+
T Consensus 81 ~swD~~lrlWDl~~g~~t~--------~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck~-------t~~~ 144 (315)
T KOG0279|consen 81 ASWDGTLRLWDLATGESTR--------RFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCKY-------TIHE 144 (315)
T ss_pred ccccceEEEEEecCCcEEE--------EEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccEEE-------EEec
Confidence 8 89999999999875443 678999999999999998 99999999999999998765421 1110
Q ss_pred CCCccccccccccceeEEEEccC--CCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEE
Q 010206 331 APGTRSFFTEIIASISDIKFARN--GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 407 (515)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~~~s~~--~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 407 (515)
..+...|.|+.|+|+ ..+|++++. ++|++||+++ .+....+.+|.+. ++.+++
T Consensus 145 --------~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-~~l~~~~~gh~~~---------------v~t~~v 200 (315)
T KOG0279|consen 145 --------DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-CQLRTTFIGHSGY---------------VNTVTV 200 (315)
T ss_pred --------CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC-cchhhcccccccc---------------EEEEEE
Confidence 112578999999997 678888775 9999999996 8888888888876 458999
Q ss_pred cCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE--ecCCCCCccccCCcccc
Q 010206 408 SGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR--VKGADNSALDANGNAFD 485 (515)
Q Consensus 408 s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l--~~~~~~~~~~~~~~~~~ 485 (515)
||||..+++|+.||.+.+||++.++++ ....|..+|.+++|+|+..+|+.+...+ |++ .+..... .++..+..+
T Consensus 201 SpDGslcasGgkdg~~~LwdL~~~k~l--ysl~a~~~v~sl~fspnrywL~~at~~s-IkIwdl~~~~~v-~~l~~d~~g 276 (315)
T KOG0279|consen 201 SPDGSLCASGGKDGEAMLWDLNEGKNL--YSLEAFDIVNSLCFSPNRYWLCAATATS-IKIWDLESKAVV-EELKLDGIG 276 (315)
T ss_pred CCCCCEEecCCCCceEEEEEccCCcee--EeccCCCeEeeEEecCCceeEeeccCCc-eEEEeccchhhh-hhccccccc
Confidence 999999999999999999999988553 3457889999999999998887776555 777 2222221 122222222
Q ss_pred c-----cCCeeEEEEcCCCCEEEEEc-CCcEEEEe
Q 010206 486 F-----SMKLLHLAWHPSENSIACAA-SNSLYMYY 514 (515)
Q Consensus 486 ~-----~~~i~~~~~s~~~~~la~~~-~~~~~i~~ 514 (515)
. ...-.+++|++||..|.++- ++.+.+|.
T Consensus 277 ~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 277 PSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred cccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 2 23358999999999999886 56688886
No 20
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.5e-36 Score=247.14 Aligned_cols=286 Identities=18% Similarity=0.277 Sum_probs=235.0
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.+.|.++.|+|+|..||+|+.|..|.+|++..... -...+.+|.
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce----------------------N~~~lkgHs---------- 90 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE----------------------NFWVLKGHS---------- 90 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc----------------------ceeeecccc----------
Confidence 358999999999999999999999999999999765543 224466888
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
+.|..+.| ..+++.+++++.|++|+.||+++++....
T Consensus 91 --gAVM~l~~--~~d~s~i~S~gtDk~v~~wD~~tG~~~rk--------------------------------------- 127 (338)
T KOG0265|consen 91 --GAVMELHG--MRDGSHILSCGTDKTVRGWDAETGKRIRK--------------------------------------- 127 (338)
T ss_pred --ceeEeeee--ccCCCEEEEecCCceEEEEecccceeeeh---------------------------------------
Confidence 99999999 56788999999999999999999874332
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEE-e-CCCcEEEEeCCCCCcc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS-A-DDLRINLWNLEISNQS 268 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~ 268 (515)
.++|..-|+++.-+..|..|+. + +|+++++||+++....
T Consensus 128 ---------------------------------------~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~ 168 (338)
T KOG0265|consen 128 ---------------------------------------HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI 168 (338)
T ss_pred ---------------------------------------hccccceeeecCccccCCeEEEecCCCceEEEEeecccchh
Confidence 2466777788876666766665 5 7999999999966543
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
. ....+.+++++.|..++ ..+.+|+-|+.|++||++.+... .++.||..+|+.+
T Consensus 169 ~---------t~~~kyqltAv~f~d~s-~qv~sggIdn~ikvWd~r~~d~~----------------~~lsGh~DtIt~l 222 (338)
T KOG0265|consen 169 K---------TFENKYQLTAVGFKDTS-DQVISGGIDNDIKVWDLRKNDGL----------------YTLSGHADTITGL 222 (338)
T ss_pred h---------ccccceeEEEEEecccc-cceeeccccCceeeeccccCcce----------------EEeecccCceeeE
Confidence 2 12246778999999988 89999999999999999887652 2367888999999
Q ss_pred EEccCCCEEEEEc-CCeEEEEEeeC---CCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEE
Q 010206 349 KFARNGRHILSRD-YMTLKLWDINM---DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 424 (515)
Q Consensus 349 ~~s~~~~~l~s~~-~~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~ 424 (515)
..+|+|.++.+-+ |.++++||++. ..++++.+.+|...-. .. ...++|+|++..+..|+.|..++
T Consensus 223 sls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfe--------kn---lL~cswsp~~~~i~ags~dr~vy 291 (338)
T KOG0265|consen 223 SLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFE--------KN---LLKCSWSPNGTKITAGSADRFVY 291 (338)
T ss_pred EeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhh--------hh---cceeeccCCCCccccccccceEE
Confidence 9999999999965 59999999984 1334677776653211 00 23789999999999999999999
Q ss_pred EEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 425 VFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 425 iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+||.... ..+..|.+|...|+.+.|+|..+++.+++.|++|.+
T Consensus 292 vwd~~~r-~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 292 VWDTTSR-RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred Eeecccc-cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 9998865 455899999999999999999999999999999998
No 21
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.4e-36 Score=260.83 Aligned_cols=330 Identities=18% Similarity=0.292 Sum_probs=253.6
Q ss_pred cccccceEEEEECCCCC-eEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 32 VQEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~-~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..|..+|.+.+|+|-.. .|++|+.|-..++|++......+.. .+ .++......+ ++.+
T Consensus 175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~--q~-----------~lrh~~~~~~--------~s~~ 233 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGST--QL-----------VLRHCIREGG--------KSVP 233 (524)
T ss_pred ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccch--hh-----------hhhhhhhhhc--------ccCC
Confidence 35999999999999655 8999999999999998752211000 00 0000000111 1122
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
....|++++| +.+|..|++|+.||.+++|+........
T Consensus 234 ~nkdVT~L~W--n~~G~~LatG~~~G~~riw~~~G~l~~t---------------------------------------- 271 (524)
T KOG0273|consen 234 SNKDVTSLDW--NNDGTLLATGSEDGEARIWNKDGNLIST---------------------------------------- 271 (524)
T ss_pred ccCCcceEEe--cCCCCeEEEeecCcEEEEEecCchhhhh----------------------------------------
Confidence 2266999999 6678899999999999999976543100
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
+..|.++|.++.|+.+|.+|+++ -|+++.+||..++....
T Consensus 272 ---------------------------------------l~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 272 ---------------------------------------LGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred ---------------------------------------hhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE
Confidence 36789999999999999999998 79999999998765442
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
.++-|..+...+.|-.+. .|++++.|+.|+++.+..... ...+.+|.++|.++.
T Consensus 313 --------~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~P----------------~~t~~GH~g~V~alk 366 (524)
T KOG0273|consen 313 --------QFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDRP----------------VKTFIGHHGEVNALK 366 (524)
T ss_pred --------eeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCCc----------------ceeeecccCceEEEE
Confidence 445577776788998764 899999999999999865443 233677899999999
Q ss_pred EccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCC---------CEEEEecC
Q 010206 350 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG---------GRVATGSY 419 (515)
Q Consensus 350 ~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---------~~l~s~s~ 419 (515)
|.|.|.+|++++| ++++||.... ......+..|... |..+.|+|+| ..|++++.
T Consensus 367 ~n~tg~LLaS~SdD~TlkiWs~~~-~~~~~~l~~Hske---------------i~t~~wsp~g~v~~n~~~~~~l~sas~ 430 (524)
T KOG0273|consen 367 WNPTGSLLASCSDDGTLKIWSMGQ-SNSVHDLQAHSKE---------------IYTIKWSPTGPVTSNPNMNLMLASASF 430 (524)
T ss_pred ECCCCceEEEecCCCeeEeeecCC-Ccchhhhhhhccc---------------eeeEeecCCCCccCCCcCCceEEEeec
Confidence 9999999999987 9999999885 7778888888755 4478888865 47899999
Q ss_pred CCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEec--CCCCCccccCCccccccCCeeEEEEcC
Q 010206 420 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK--GADNSALDANGNAFDFSMKLLHLAWHP 497 (515)
Q Consensus 420 dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~--~~~~~~~~~~~~~~~~~~~i~~~~~s~ 497 (515)
|++|++||+..+ ..+.+|..|..||.+++|+|+|+++|+|+.||.|.++. ..++. ....-.+.|..+.|+.
T Consensus 431 dstV~lwdv~~g-v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~------~s~~~~~~Ifel~Wn~ 503 (524)
T KOG0273|consen 431 DSTVKLWDVESG-VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLV------KSYQGTGGIFELCWNA 503 (524)
T ss_pred CCeEEEEEccCC-ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhee------EeecCCCeEEEEEEcC
Confidence 999999999988 45589999999999999999999999999999999922 22222 1122356799999999
Q ss_pred CCCEEEEEc-CCcEEE
Q 010206 498 SENSIACAA-SNSLYM 512 (515)
Q Consensus 498 ~~~~la~~~-~~~~~i 512 (515)
+|++|.++. ++.+++
T Consensus 504 ~G~kl~~~~sd~~vcv 519 (524)
T KOG0273|consen 504 AGDKLGACASDGSVCV 519 (524)
T ss_pred CCCEEEEEecCCCceE
Confidence 999988554 444554
No 22
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=9e-37 Score=255.45 Aligned_cols=283 Identities=14% Similarity=0.227 Sum_probs=239.6
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.+.|.|+++.|...+|++|+.|++++|||+.+++ +..++.+|.
T Consensus 147 i~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~-----------------------LkltltGhi---------- 193 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ-----------------------LKLTLTGHI---------- 193 (460)
T ss_pred hhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe-----------------------EEEeecchh----------
Confidence 45899999999999999999999999999999999887 457888998
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
+.|..+++++..+ |+++++.|+.|+.||++..+....
T Consensus 194 --~~vr~vavS~rHp--YlFs~gedk~VKCwDLe~nkvIR~--------------------------------------- 230 (460)
T KOG0285|consen 194 --ETVRGVAVSKRHP--YLFSAGEDKQVKCWDLEYNKVIRH--------------------------------------- 230 (460)
T ss_pred --heeeeeeecccCc--eEEEecCCCeeEEEechhhhhHHH---------------------------------------
Confidence 8899999976655 999999999999999987653221
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
-.+|-..|.|++.+|.-..|++| .|.++++||+++.....
T Consensus 231 ---------------------------------------YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~ 271 (460)
T KOG0285|consen 231 ---------------------------------------YHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVH 271 (460)
T ss_pred ---------------------------------------hccccceeEEEeccccceeEEecCCcceEEEeeecccceEE
Confidence 25888999999999999999998 89999999999877654
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
.+.+|..+|.++.+.|.+ -.+++|+.|++|++||++.++... .+..|...+++++
T Consensus 272 --------~l~GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt~~----------------tlt~hkksvral~ 326 (460)
T KOG0285|consen 272 --------VLSGHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKTMI----------------TLTHHKKSVRALC 326 (460)
T ss_pred --------EecCCCCcceeEEeecCC-CceEEecCCceEEEeeeccCceeE----------------eeecccceeeEEe
Confidence 678999999999999988 689999999999999999987532 2566778999999
Q ss_pred EccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecC
Q 010206 350 FARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 350 ~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~ 429 (515)
.+|....+++++...|+-|++.. +..+..+.+|... +.+++...|+ ++++|++.|.+.+||.+
T Consensus 327 lhP~e~~fASas~dnik~w~~p~-g~f~~nlsgh~~i---------------intl~~nsD~-v~~~G~dng~~~fwdwk 389 (460)
T KOG0285|consen 327 LHPKENLFASASPDNIKQWKLPE-GEFLQNLSGHNAI---------------INTLSVNSDG-VLVSGGDNGSIMFWDWK 389 (460)
T ss_pred cCCchhhhhccCCccceeccCCc-cchhhccccccce---------------eeeeeeccCc-eEEEcCCceEEEEEecC
Confidence 99999999998877999999985 8888888888766 3377777554 68889999999999999
Q ss_pred CCCcceeeec--------cCCCceeeEEECCCCCeeEeecCCCeEEEecC
Q 010206 430 EGSAESTTLE--------ASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKG 471 (515)
Q Consensus 430 ~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~ 471 (515)
++-+- +.++ .....|.+.+|...|..|++|..|++|++++.
T Consensus 390 sg~ny-Q~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 390 SGHNY-QRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKE 438 (460)
T ss_pred cCccc-ccccccccCCccccccceeEEeecccCceEEeccCCcceEEEec
Confidence 87332 2221 22356788899999999999999999999443
No 23
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-36 Score=255.75 Aligned_cols=282 Identities=16% Similarity=0.224 Sum_probs=248.3
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|..+|+.+-|+|+-..+++++.|++|++||..+++. ...+++|.
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~-----------------------e~~LrGHt---------- 150 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL-----------------------ERSLRGHT---------- 150 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhh-----------------------hhhhhccc----------
Confidence 457999999999999999999999999999999998873 47789998
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|..|+| +..|.++++++.|-.+++||..+..
T Consensus 151 --~sv~di~~--~a~Gk~l~tcSsDl~~~LWd~~~~~------------------------------------------- 183 (406)
T KOG0295|consen 151 --DSVFDISF--DASGKYLATCSSDLSAKLWDFDTFF------------------------------------------- 183 (406)
T ss_pred --cceeEEEE--ecCccEEEecCCccchhheeHHHHH-------------------------------------------
Confidence 88999999 5668899999999999999987631
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
.+.+. +.+|...|.+++|-|.|.+++++ .|.+|+.|++.++....
T Consensus 184 ---------------------------------~c~ks-~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~ 229 (406)
T KOG0295|consen 184 ---------------------------------RCIKS-LIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVK 229 (406)
T ss_pred ---------------------------------HHHHH-hcCcccceeeEEEEecCCeeeecccccceeEEecccceeEE
Confidence 01111 46888999999999999999998 89999999999887664
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
++.+|.+.|..++.+.|| .++++++.|.++++|-+.+++.. ..+.+|.-+|.+++
T Consensus 230 --------t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k----------------~~lR~hEh~vEci~ 284 (406)
T KOG0295|consen 230 --------TFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCK----------------AELREHEHPVECIA 284 (406)
T ss_pred --------eccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchhh----------------hhhhccccceEEEE
Confidence 778999999999999999 99999999999999999887542 23677778899999
Q ss_pred EccC---------------CCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCE
Q 010206 350 FARN---------------GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 413 (515)
Q Consensus 350 ~s~~---------------~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 413 (515)
|.|. ++++++++. ++|++||+.+ +.++.++.+|...+ ..++|+|.|+|
T Consensus 285 wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t-g~cL~tL~ghdnwV---------------r~~af~p~Gky 348 (406)
T KOG0295|consen 285 WAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST-GMCLFTLVGHDNWV---------------RGVAFSPGGKY 348 (406)
T ss_pred ecccccCcchhhccCCCCCccEEEeecccceEEEEeccC-CeEEEEEeccccee---------------eeeEEcCCCeE
Confidence 8663 368888885 9999999998 89999999999884 49999999999
Q ss_pred EEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 414 VATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 414 l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
|+++.+|+++++||++++.++ .+++.|..-++.+.|+.+..++++|+.|.++++
T Consensus 349 i~ScaDDktlrvwdl~~~~cm-k~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~Kv 402 (406)
T KOG0295|consen 349 ILSCADDKTLRVWDLKNLQCM-KTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 402 (406)
T ss_pred EEEEecCCcEEEEEeccceee-eccCCCcceeEEEecCCCCceEEeccccceeee
Confidence 999999999999999998655 788899999999999999999999999999988
No 24
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-36 Score=270.10 Aligned_cols=282 Identities=15% Similarity=0.210 Sum_probs=243.0
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
..|++.|.++.|+|...+++++-.+|.|.||+.++...+ .++.-.+
T Consensus 10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmV-----------------------ksfeV~~----------- 55 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMV-----------------------KSFEVSE----------- 55 (794)
T ss_pred hccCCceeeeecCCCCceEEEeeecCeeEEEecccceee-----------------------eeeeecc-----------
Confidence 348899999999999999999999999999999887643 4454444
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
.+|++..|.+..+ .+++|+.|..|++|+..+++....
T Consensus 56 -~PvRa~kfiaRkn--Wiv~GsDD~~IrVfnynt~ekV~~---------------------------------------- 92 (794)
T KOG0276|consen 56 -VPVRAAKFIARKN--WIVTGSDDMQIRVFNYNTGEKVKT---------------------------------------- 92 (794)
T ss_pred -cchhhheeeeccc--eEEEecCCceEEEEecccceeeEE----------------------------------------
Confidence 7799999987665 999999999999999998764332
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccc
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 270 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 270 (515)
...|...|++++.+|...+++++ +|-+|++||.+..-.+.
T Consensus 93 --------------------------------------FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~- 133 (794)
T KOG0276|consen 93 --------------------------------------FEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACE- 133 (794)
T ss_pred --------------------------------------eeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeee-
Confidence 35788999999999999999998 89999999998554332
Q ss_pred eecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEE
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 350 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (515)
+.+++|...|.+++|+|.+++.|++++-|++|++|.+..... ..++.+|...|+|+.+
T Consensus 134 ------qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~----------------nfTl~gHekGVN~Vdy 191 (794)
T KOG0276|consen 134 ------QTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP----------------NFTLEGHEKGVNCVDY 191 (794)
T ss_pred ------eEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCC----------------ceeeeccccCcceEEe
Confidence 378999999999999999889999999999999999976543 2347788899999999
Q ss_pred cc--CCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 351 AR--NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 351 s~--~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
-+ |..+|++|+| .+|+|||..+ ..+++++.+|...+ ..++|+|.=.+++|||+||+++||+
T Consensus 192 y~~gdkpylIsgaDD~tiKvWDyQt-k~CV~TLeGHt~Nv---------------s~v~fhp~lpiiisgsEDGTvriWh 255 (794)
T KOG0276|consen 192 YTGGDKPYLISGADDLTIKVWDYQT-KSCVQTLEGHTNNV---------------SFVFFHPELPIIISGSEDGTVRIWN 255 (794)
T ss_pred ccCCCcceEEecCCCceEEEeecch-HHHHHHhhcccccc---------------eEEEecCCCcEEEEecCCccEEEec
Confidence 87 4579999876 9999999997 99999999998764 4899999999999999999999999
Q ss_pred cCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 428 CSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
-.+. .+..++......+++++..+....++.|...|.+.+
T Consensus 256 s~Ty-~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 256 SKTY-KLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred Ccce-ehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 8876 455788888889999999998888999999888877
No 25
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.6e-35 Score=234.75 Aligned_cols=271 Identities=17% Similarity=0.293 Sum_probs=219.4
Q ss_pred ccccc-cceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 31 EVQEV-DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 31 ~~~h~-~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
.++|. ..|+.+.+.||++.||+|+.- .|++||+.+.... .+.++.+|.
T Consensus 35 Tiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~---------------------Pv~t~e~h~--------- 83 (311)
T KOG0315|consen 35 TIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPN---------------------PVATFEGHT--------- 83 (311)
T ss_pred EEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCC---------------------ceeEEeccC---------
Confidence 45565 479999999999999999865 6999999887643 557788998
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..|+++.| ..+|+.+++|+.||+++|||++...+.+
T Consensus 84 ---kNVtaVgF--~~dgrWMyTgseDgt~kIWdlR~~~~qR--------------------------------------- 119 (311)
T KOG0315|consen 84 ---KNVTAVGF--QCDGRWMYTGSEDGTVKIWDLRSLSCQR--------------------------------------- 119 (311)
T ss_pred ---CceEEEEE--eecCeEEEecCCCceEEEEeccCcccch---------------------------------------
Confidence 77999999 7789999999999999999998743211
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
...|..+|+++..+|+...|++| .+|.|++||+......
T Consensus 120 ----------------------------------------~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~ 159 (311)
T KOG0315|consen 120 ----------------------------------------NYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT 159 (311)
T ss_pred ----------------------------------------hccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccc
Confidence 12455889999999999999999 7999999999876544
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
.++ +......|.++...||| .+++.+...|...+|++-+..... .+. +...++.|.+.+..+
T Consensus 160 ~~l-------iPe~~~~i~sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~~s----~l~------P~~k~~ah~~~il~C 221 (311)
T KOG0315|consen 160 HEL-------IPEDDTSIQSLTVMPDG-SMLAAANNKGNCYVWRLLNHQTAS----ELE------PVHKFQAHNGHILRC 221 (311)
T ss_pred ccc-------CCCCCcceeeEEEcCCC-cEEEEecCCccEEEEEccCCCccc----cce------EhhheecccceEEEE
Confidence 332 23345789999999999 899999999999999997743221 111 122378889999999
Q ss_pred EEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 349 KFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 349 ~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
.+|||+++|++++ |.+++||+.+..-+....+.+|... ++.++||.||+||+||+.|+.+++|+
T Consensus 222 ~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rW---------------vWdc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 222 LLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRW---------------VWDCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred EECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCce---------------EEeeeeccCccEEEecCCCCceeecc
Confidence 9999999999976 5999999998633566677777766 67999999999999999999999999
Q ss_pred cCCCCcceeeeccCCCceeeEEE
Q 010206 428 CSEGSAESTTLEASKNPMRRQVQ 450 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~~~v~~~~~ 450 (515)
+..++ .+....+|..+..+++.
T Consensus 287 ~~~~k-~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 287 LSAGK-EVRQYQGHHKAAVCVAL 308 (311)
T ss_pred cccCc-eeeecCCcccccEEEEe
Confidence 99884 44677888776666654
No 26
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.3e-35 Score=266.13 Aligned_cols=249 Identities=17% Similarity=0.224 Sum_probs=195.6
Q ss_pred eccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010206 230 AHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 309 (515)
Q Consensus 230 ~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~ 309 (515)
..+|...|++++++.+...+++|..+.+++|+..+.+.... +. .+.+.+..|-|.+ +++++|...|.+.
T Consensus 369 ~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRT--------i~--~~y~l~~~Fvpgd-~~Iv~G~k~Gel~ 437 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRT--------IT--CGYILASKFVPGD-RYIVLGTKNGELQ 437 (888)
T ss_pred eccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEE--------ec--cccEEEEEecCCC-ceEEEeccCCceE
Confidence 47899999999999999999999999999999998776543 22 4478999999998 9999999999999
Q ss_pred EEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeC----CCCCeeeEeeec
Q 010206 310 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM----DSGPVATFQVHE 384 (515)
Q Consensus 310 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~----~~~~~~~~~~~~ 384 (515)
+||+....++.. ...|.+.|.+++.+||++.+++|+. .+|++||+.. ++...+.+..+.
T Consensus 438 vfdlaS~~l~Et----------------i~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~ 501 (888)
T KOG0306|consen 438 VFDLASASLVET----------------IRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKH 501 (888)
T ss_pred EEEeehhhhhhh----------------hhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeecc
Confidence 999998876543 5678899999999999999999875 9999999863 111112222222
Q ss_pred cccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCC
Q 010206 385 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSG 464 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 464 (515)
...-. --.+|.++.+||||++|+.+=-|++++||-+.+- ....+|.+|.-||.++.++||++.+++||.|+
T Consensus 502 ~rtLe--------l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl-KFflsLYGHkLPV~smDIS~DSklivTgSADK 572 (888)
T KOG0306|consen 502 TRTLE--------LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL-KFFLSLYGHKLPVLSMDISPDSKLIVTGSADK 572 (888)
T ss_pred ceEEe--------ccccEEEEEEcCCCcEEEEEeccCeEEEEEecce-eeeeeecccccceeEEeccCCcCeEEeccCCC
Confidence 11110 0113669999999999999999999999999986 45579999999999999999999999999999
Q ss_pred eEEE---------------------------------------ecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEE
Q 010206 465 VVRR---------------------------------------VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACA 505 (515)
Q Consensus 465 ~v~l---------------------------------------~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~ 505 (515)
.|++ ++-|.-.+.+.....-+|...|.+++.+|+|.+++++
T Consensus 573 nVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~ 652 (888)
T KOG0306|consen 573 NVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSS 652 (888)
T ss_pred ceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEec
Confidence 9998 1111111111222344688899999999999999987
Q ss_pred cC-CcEEEEe
Q 010206 506 AS-NSLYMYY 514 (515)
Q Consensus 506 ~~-~~~~i~~ 514 (515)
+. ..+.+|.
T Consensus 653 shD~sIRlwE 662 (888)
T KOG0306|consen 653 SHDKSIRLWE 662 (888)
T ss_pred cCCceeEeee
Confidence 74 6688884
No 27
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7e-36 Score=275.53 Aligned_cols=264 Identities=19% Similarity=0.302 Sum_probs=212.7
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCc----cccCccc--cc--ccccCCccceeeeecccCCCccccc
Q 010206 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGG----QRRDLEM--MD--YSMSRHPEFRYKTEFQSHEPEFDYL 106 (515)
Q Consensus 35 ~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~----~~~~~~~--~~--~~~~~~~~~~~~~~~~~h~~~~~~~ 106 (515)
...++|..|++|+.+||.|-.|..|++|.+...+.... .+..++. .+ ....-..+.-...++.+|.
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~------ 451 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS------ 451 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC------
Confidence 35799999999999999999999999999986432110 0011100 00 0000011111223477787
Q ss_pred ccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcc
Q 010206 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (515)
Q Consensus 107 ~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l 186 (515)
++|....|+ |+.++|++++.|+++|+|.+.+....-
T Consensus 452 ------GPVyg~sFs--Pd~rfLlScSED~svRLWsl~t~s~~V------------------------------------ 487 (707)
T KOG0263|consen 452 ------GPVYGCSFS--PDRRFLLSCSEDSSVRLWSLDTWSCLV------------------------------------ 487 (707)
T ss_pred ------Cceeeeeec--ccccceeeccCCcceeeeecccceeEE------------------------------------
Confidence 999999995 456799999999999999998754211
Q ss_pred ccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCC
Q 010206 187 ERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS 265 (515)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~ 265 (515)
. -.+|..+|+++.|+|.|-+|+++ .|++.++|.....
T Consensus 488 -----------------------------------------~-y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~ 525 (707)
T KOG0263|consen 488 -----------------------------------------I-YKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN 525 (707)
T ss_pred -----------------------------------------E-ecCCCcceeeEEecCCceEEEecCCCceeeeeecccC
Confidence 1 25888999999999999999998 8999999998865
Q ss_pred CcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccce
Q 010206 266 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 345 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 345 (515)
... +.+.+|...|.|+.|+|+. .++++|+.|.++|+||+.+|..+ +.|.||.++|
T Consensus 526 ~Pl--------RifaghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~V----------------RiF~GH~~~V 580 (707)
T KOG0263|consen 526 KPL--------RIFAGHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSV----------------RIFTGHKGPV 580 (707)
T ss_pred Cch--------hhhcccccccceEEECCcc-cccccCCCCceEEEEEcCCCcEE----------------EEecCCCCce
Confidence 443 3678899999999999998 99999999999999999998753 3478899999
Q ss_pred eEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEE
Q 010206 346 SDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 424 (515)
Q Consensus 346 ~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~ 424 (515)
.+++|||+|++|++|++ +.|.+||+.+ +.++..+.+|.+. |.++.||.||..||+|+.|++|+
T Consensus 581 ~al~~Sp~Gr~LaSg~ed~~I~iWDl~~-~~~v~~l~~Ht~t---------------i~SlsFS~dg~vLasgg~DnsV~ 644 (707)
T KOG0263|consen 581 TALAFSPCGRYLASGDEDGLIKIWDLAN-GSLVKQLKGHTGT---------------IYSLSFSRDGNVLASGGADNSVR 644 (707)
T ss_pred EEEEEcCCCceEeecccCCcEEEEEcCC-CcchhhhhcccCc---------------eeEEEEecCCCEEEecCCCCeEE
Confidence 99999999999999986 9999999996 8999999999665 55999999999999999999999
Q ss_pred EEecCCC
Q 010206 425 VFGCSEG 431 (515)
Q Consensus 425 iw~~~~~ 431 (515)
+||+...
T Consensus 645 lWD~~~~ 651 (707)
T KOG0263|consen 645 LWDLTKV 651 (707)
T ss_pred EEEchhh
Confidence 9999754
No 28
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.2e-34 Score=243.59 Aligned_cols=332 Identities=12% Similarity=0.065 Sum_probs=260.8
Q ss_pred ccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccc
Q 010206 29 GEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (515)
Q Consensus 29 ~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (515)
.....|+++|.+++.+|+.+++|||+.|..-.||++.+++. ..++.+|.
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~-----------------------~~eltgHK-------- 106 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEF-----------------------AGELTGHK-------- 106 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcc-----------------------eeEecCCC--------
Confidence 34568999999999999999999999999999999998873 46788998
Q ss_pred ccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccc
Q 010206 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (515)
Q Consensus 109 ~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~ 188 (515)
..|+++.| +.++.+|++|..+|.|++|+..++.......... +.+. -+.|.|.+..+
T Consensus 107 ----DSVt~~~F--shdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~--------~die-------Wl~WHp~a~il-- 163 (399)
T KOG0296|consen 107 ----DSVTCCSF--SHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEV--------EDIE-------WLKWHPRAHIL-- 163 (399)
T ss_pred ----CceEEEEE--ccCceEEEecCCCccEEEEEcccCceEEEeeccc--------CceE-------EEEecccccEE--
Confidence 99999999 6788999999999999999999988766554221 1222 57888988888
Q ss_pred ccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCc
Q 010206 189 NFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
+.|+.||.+-+|. +.+. .....+.+|..++++=.|.|+|+.++++ .||+|++|++.+..+
T Consensus 164 ----------lAG~~DGsvWmw~--ip~~-------~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p 224 (399)
T KOG0296|consen 164 ----------LAGSTDGSVWMWQ--IPSQ-------ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQP 224 (399)
T ss_pred ----------EeecCCCcEEEEE--CCCc-------ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCce
Confidence 9999999999999 3321 1122257999999999999999999999 899999999999877
Q ss_pred ccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 347 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (515)
...+- ........++.++..+ ..++.|+.++.+++-+..+++.+.- ..+ .. ......+...+.+
T Consensus 225 ~~~~~-------~~e~~~~~~~~~~~~~-~~~~~g~~e~~~~~~~~~sgKVv~~----~n~-~~---~~l~~~~e~~~es 288 (399)
T KOG0296|consen 225 LHKIT-------QAEGLELPCISLNLAG-STLTKGNSEGVACGVNNGSGKVVNC----NNG-TV---PELKPSQEELDES 288 (399)
T ss_pred eEEec-------ccccCcCCcccccccc-ceeEeccCCccEEEEccccceEEEe----cCC-CC---ccccccchhhhhh
Confidence 65432 1113456788888887 8999999999999988888775321 110 11 1112233344555
Q ss_pred EEEcc---CCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcE
Q 010206 348 IKFAR---NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 423 (515)
Q Consensus 348 ~~~s~---~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i 423 (515)
+.+.| .-.+.|.|+ ||+|.|||+.. .++...+ .|... |+.+.|-+ ..+|++++.+|.|
T Consensus 289 ve~~~~ss~lpL~A~G~vdG~i~iyD~a~-~~~R~~c-~he~~---------------V~~l~w~~-t~~l~t~c~~g~v 350 (399)
T KOG0296|consen 289 VESIPSSSKLPLAACGSVDGTIAIYDLAA-STLRHIC-EHEDG---------------VTKLKWLN-TDYLLTACANGKV 350 (399)
T ss_pred hhhcccccccchhhcccccceEEEEeccc-chhheec-cCCCc---------------eEEEEEcC-cchheeeccCceE
Confidence 55544 555666777 49999999985 4433333 34433 56899998 7899999999999
Q ss_pred EEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 424 RVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 424 ~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+.||.++| .++.++.+|..+|..++++|+++.++++|.|++.++
T Consensus 351 ~~wDaRtG-~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~V 394 (399)
T KOG0296|consen 351 RQWDARTG-QLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALV 394 (399)
T ss_pred Eeeecccc-ceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEE
Confidence 99999998 666899999999999999999999999999999888
No 29
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.3e-35 Score=269.72 Aligned_cols=265 Identities=16% Similarity=0.239 Sum_probs=216.7
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..++|..| ++++.+||.|..|..|++|.+...+++.......-...
T Consensus 379 ~~v~ca~f--SddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~-------------------------------- 424 (707)
T KOG0263|consen 379 QGVTCAEF--SDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNI-------------------------------- 424 (707)
T ss_pred CcceeEee--cCCcchhhccccccEEEEEecchhhhccccchhhhccc--------------------------------
Confidence 67999999 66778999999999999999987665444332211000
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
=..+.|-.+.+-| ... ......+.+|.++|....|+|+.++|+++ .|+++|+|.+.+.....
T Consensus 425 ------d~~sad~~~~~~D-----~~~----~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V-- 487 (707)
T KOG0263|consen 425 ------DTESADVDVDMLD-----DDS----SGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV-- 487 (707)
T ss_pred ------cccccchhhhhcc-----ccC----CceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE--
Confidence 0111111122211 111 11111257999999999999999999999 89999999999876553
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
.+.+|..+|..+.|+|.| .+||+++.|++.++|....... .+++.+|.+.|.|+.|+
T Consensus 488 ------~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~P----------------lRifaghlsDV~cv~FH 544 (707)
T KOG0263|consen 488 ------IYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKP----------------LRIFAGHLSDVDCVSFH 544 (707)
T ss_pred ------EecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCc----------------hhhhcccccccceEEEC
Confidence 567999999999999999 9999999999999999876432 34578888999999999
Q ss_pred cCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCC
Q 010206 352 RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 352 ~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~ 430 (515)
|+..|+++|+. .++++||+.+ +..++.|.+|... |++++|||+|++|++|+.||.|.+||+.+
T Consensus 545 PNs~Y~aTGSsD~tVRlWDv~~-G~~VRiF~GH~~~---------------V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 545 PNSNYVATGSSDRTVRLWDVST-GNSVRIFTGHKGP---------------VTALAFSPCGRYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred CcccccccCCCCceEEEEEcCC-CcEEEEecCCCCc---------------eEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence 99999999875 9999999997 8999999999876 66999999999999999999999999998
Q ss_pred CCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 431 GSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 431 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+ .++..+.+|.+.+.++.|+.+|..|++|+.|.+|++
T Consensus 609 ~-~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~l 645 (707)
T KOG0263|consen 609 G-SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRL 645 (707)
T ss_pred C-cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEE
Confidence 7 566899999999999999999999999999999999
No 30
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7.4e-36 Score=254.18 Aligned_cols=240 Identities=19% Similarity=0.239 Sum_probs=199.5
Q ss_pred eccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010206 230 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 308 (515)
Q Consensus 230 ~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i 308 (515)
+..|+..|+++.|++++.++++| .+|.|++|+........ ....|...|++++|+|++ ..|++++.||+|
T Consensus 134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~--------~~ahh~eaIRdlafSpnD-skF~t~SdDg~i 204 (464)
T KOG0284|consen 134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI--------IQAHHAEAIRDLAFSPND-SKFLTCSDDGTI 204 (464)
T ss_pred hhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH--------hhHhhhhhhheeccCCCC-ceeEEecCCCeE
Confidence 47899999999999999999999 79999999987443221 223355999999999998 899999999999
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccc
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLR 387 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~ 387 (515)
+|||....+. ..++.+|.-.|.+++|+|...++++|++ ..|++||.++ +.++.++.+|...
T Consensus 205 kiWdf~~~ke----------------e~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS-g~cl~tlh~HKnt- 266 (464)
T KOG0284|consen 205 KIWDFRMPKE----------------ERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS-GSCLATLHGHKNT- 266 (464)
T ss_pred EEEeccCCch----------------hheeccCCCCcceeccCCccceeEEccCCceeEeecCCC-cchhhhhhhccce-
Confidence 9999987653 1236778889999999999999999876 9999999997 9999999999876
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCC-CeeEeecCCCeE
Q 010206 388 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR-PSRPLGSLSGVV 466 (515)
Q Consensus 388 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v 466 (515)
|+.+.|+|++++|+|+|.|..++++|+++- +.+.++++|...++++.|+|-. ..+.+|+.||.|
T Consensus 267 --------------Vl~~~f~~n~N~Llt~skD~~~kv~DiR~m-kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsv 331 (464)
T KOG0284|consen 267 --------------VLAVKFNPNGNWLLTGSKDQSCKVFDIRTM-KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSV 331 (464)
T ss_pred --------------EEEEEEcCCCCeeEEccCCceEEEEehhHh-HHHHHhhcchhhheeeccccccccceeeccCCCce
Confidence 679999999999999999999999999965 4558999999999999999965 467899999999
Q ss_pred EEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCc-EEEE
Q 010206 467 RRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS-LYMY 513 (515)
Q Consensus 467 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~-~~i~ 513 (515)
....-.. ..++......|...|.+++|+|=|..|++|+.+. +.+|
T Consensus 332 vh~~v~~--~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw 377 (464)
T KOG0284|consen 332 VHWVVGL--EEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFW 377 (464)
T ss_pred EEEeccc--cccccCCCcccccceeeeeccccceeEeecCCCcceeee
Confidence 9822110 1112222346889999999999999999998655 5555
No 31
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.6e-34 Score=270.32 Aligned_cols=286 Identities=23% Similarity=0.425 Sum_probs=236.8
Q ss_pred ccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccc
Q 010206 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (515)
.|...|+|+.|+++|++|++++.++.+++|+..+.+. .....+.+|.
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~---------------------~~~~~l~~h~------------ 203 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS---------------------NLLRELSGHT------------ 203 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc---------------------hhhccccccc------------
Confidence 4578999999999999999999999999999855441 1334457777
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCC-eeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
..|+.++| ++++.++++++.|++|++||+... ....
T Consensus 204 ~~v~~~~f--s~d~~~l~s~s~D~tiriwd~~~~~~~~~----------------------------------------- 240 (456)
T KOG0266|consen 204 RGVSDVAF--SPDGSYLLSGSDDKTLRIWDLKDDGRNLK----------------------------------------- 240 (456)
T ss_pred cceeeeEE--CCCCcEEEEecCCceEEEeeccCCCeEEE-----------------------------------------
Confidence 88999999 556779999999999999999332 2211
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccc
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 270 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 270 (515)
. +.+|...|++++|+|+++++++| .|++|++||+++++...
T Consensus 241 ------------------------------------~-l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~- 282 (456)
T KOG0266|consen 241 ------------------------------------T-LKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVR- 282 (456)
T ss_pred ------------------------------------E-ecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEE-
Confidence 1 46899999999999999999999 89999999999855442
Q ss_pred eecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccc--ceeEE
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA--SISDI 348 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~ 348 (515)
.+.+|.+.|.+++|++++ ++|++++.|+.|++||+.++... ..+.+ .++.. +++++
T Consensus 283 -------~l~~hs~~is~~~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~--~~~~~------------~~~~~~~~~~~~ 340 (456)
T KOG0266|consen 283 -------KLKGHSDGISGLAFSPDG-NLLVSASYDGTIRVWDLETGSKL--CLKLL------------SGAENSAPVTSV 340 (456)
T ss_pred -------eeeccCCceEEEEECCCC-CEEEEcCCCccEEEEECCCCcee--eeecc------------cCCCCCCceeEE
Confidence 678899999999999999 99999999999999999998732 01111 22222 59999
Q ss_pred EEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 349 KFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 349 ~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
.|+|++++++++.. +.+++||+.. ......+.+|.... ..+++...++.+.++++|+.|+.|++|+
T Consensus 341 ~fsp~~~~ll~~~~d~~~~~w~l~~-~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~i~sg~~d~~v~~~~ 407 (456)
T KOG0266|consen 341 QFSPNGKYLLSASLDRTLKLWDLRS-GKSVGTYTGHSNLV------------RCIFSPTLSTGGKLIYSGSEDGSVYVWD 407 (456)
T ss_pred EECCCCcEEEEecCCCeEEEEEccC-CcceeeecccCCcc------------eeEecccccCCCCeEEEEeCCceEEEEe
Confidence 99999999999876 8999999996 88888888887541 1133566688999999999999999999
Q ss_pred cCCCCcceeeeccC-CCceeeEEECCCCCeeEeec--CCCeEEE
Q 010206 428 CSEGSAESTTLEAS-KNPMRRQVQTPSRPSRPLGS--LSGVVRR 468 (515)
Q Consensus 428 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~--~d~~v~l 468 (515)
+.++ ..++.+++| ...+..+.++|...++++++ .|+.+++
T Consensus 408 ~~s~-~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~ 450 (456)
T KOG0266|consen 408 SSSG-GILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRL 450 (456)
T ss_pred CCcc-chhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEE
Confidence 9986 566899999 89999999999999999998 6888887
No 32
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=6.8e-35 Score=253.81 Aligned_cols=289 Identities=16% Similarity=0.237 Sum_probs=236.8
Q ss_pred ccccccccccceEEEEECC-CCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccc
Q 010206 27 TAGEEVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY 105 (515)
Q Consensus 27 ~~~~~~~h~~~v~~v~~s~-~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 105 (515)
......+|+..|+++.|.| .+.+|++++.|+.|+||++-+. .+++.+|.+|.
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~----------------------~~~lrtf~gH~----- 258 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD----------------------RRCLRTFKGHR----- 258 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecC----------------------cceehhhhcch-----
Confidence 3345679999999999999 8999999999999999998753 23778999999
Q ss_pred cccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCc
Q 010206 106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (515)
Q Consensus 106 ~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 185 (515)
.+|.+++| +.++..|++++.|+.|++||+++|++...+...
T Consensus 259 -------k~Vrd~~~--s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~------------------------------ 299 (503)
T KOG0282|consen 259 -------KPVRDASF--NNCGTSFLSASFDRFLKLWDTETGQVLSRFHLD------------------------------ 299 (503)
T ss_pred -------hhhhhhhc--cccCCeeeeeecceeeeeeccccceEEEEEecC------------------------------
Confidence 89999999 667889999999999999999999865543322
Q ss_pred cccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCC-CEEEEe-CCCcEEEEeCC
Q 010206 186 GERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLE 263 (515)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~ 263 (515)
..+.|+.|+|++ +.|++| .|+.|+.||++
T Consensus 300 -------------------------------------------------~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiR 330 (503)
T KOG0282|consen 300 -------------------------------------------------KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIR 330 (503)
T ss_pred -------------------------------------------------CCceeeecCCCCCcEEEEecCCCcEEEEecc
Confidence 346789999988 777788 89999999999
Q ss_pred CCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccc
Q 010206 264 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 343 (515)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (515)
+++... .+..|-+.|..+.|-+++ ..+++.+.|+.+++|+.+........ ...+.-
T Consensus 331 s~kvvq--------eYd~hLg~i~~i~F~~~g-~rFissSDdks~riWe~~~~v~ik~i---------------~~~~~h 386 (503)
T KOG0282|consen 331 SGKVVQ--------EYDRHLGAILDITFVDEG-RRFISSSDDKSVRIWENRIPVPIKNI---------------ADPEMH 386 (503)
T ss_pred chHHHH--------HHHhhhhheeeeEEccCC-ceEeeeccCccEEEEEcCCCccchhh---------------cchhhc
Confidence 887442 556789999999999999 99999999999999999876543210 111113
Q ss_pred ceeEEEEccCCCEEEEEc-CCeEEEEEeeCC--CCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCC
Q 010206 344 SISDIKFARNGRHILSRD-YMTLKLWDINMD--SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 420 (515)
Q Consensus 344 ~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d 420 (515)
...++..+|++.++++-+ ++.|.++.+... ....+.+.+|..... -..+.|||||.+|++|+.|
T Consensus 387 smP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGy-------------s~~v~fSpDG~~l~SGdsd 453 (503)
T KOG0282|consen 387 TMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGY-------------SCQVDFSPDGRTLCSGDSD 453 (503)
T ss_pred cCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCc-------------eeeEEEcCCCCeEEeecCC
Confidence 477899999999999865 489999987532 223456777764422 1279999999999999999
Q ss_pred CcEEEEecCCCCcceeeeccCCCceeeEEECCCCC-eeEeecCCCeEEE
Q 010206 421 NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP-SRPLGSLSGVVRR 468 (515)
Q Consensus 421 g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v~l 468 (515)
|.+.+||.++. .+...+++|..++..+.|+|-.+ .+|++++||.|++
T Consensus 454 G~v~~wdwkt~-kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Iki 501 (503)
T KOG0282|consen 454 GKVNFWDWKTT-KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKI 501 (503)
T ss_pred ccEEEeechhh-hhhhccccCCcceEEEEecCCCcceeEecccCceeEe
Confidence 99999999987 66789999999999999999764 6899999999997
No 33
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1e-32 Score=222.76 Aligned_cols=294 Identities=15% Similarity=0.265 Sum_probs=227.5
Q ss_pred eeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCC
Q 010206 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (515)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (515)
.+..+++|. +++..++|+|.. |..|++++.|+.|++|+...+.- .
T Consensus 6 ~~~~~~gh~------------~r~W~~awhp~~-g~ilAscg~Dk~vriw~~~~~~s-~--------------------- 50 (312)
T KOG0645|consen 6 LEQKLSGHK------------DRVWSVAWHPGK-GVILASCGTDKAVRIWSTSSGDS-W--------------------- 50 (312)
T ss_pred eEEeecCCC------------CcEEEEEeccCC-ceEEEeecCCceEEEEecCCCCc-E---------------------
Confidence 345577887 889999997643 56899999999999999875321 0
Q ss_pred CcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEE
Q 010206 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 251 (515)
Q Consensus 172 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 251 (515)
.++...-.+|...|++++|+|.|++|++
T Consensus 51 ----------------------------------------------------~ck~vld~~hkrsVRsvAwsp~g~~La~ 78 (312)
T KOG0645|consen 51 ----------------------------------------------------TCKTVLDDGHKRSVRSVAWSPHGRYLAS 78 (312)
T ss_pred ----------------------------------------------------EEEEeccccchheeeeeeecCCCcEEEE
Confidence 0111112579999999999999999999
Q ss_pred e-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeecc
Q 010206 252 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 330 (515)
Q Consensus 252 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 330 (515)
+ -|.++.||.-....... + ..+++|...|.|++|+++| ++||+++.|..+-+|.+..+.. |+.
T Consensus 79 aSFD~t~~Iw~k~~~efec--v----~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddE-------fec-- 142 (312)
T KOG0645|consen 79 ASFDATVVIWKKEDGEFEC--V----ATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDE-------FEC-- 142 (312)
T ss_pred eeccceEEEeecCCCceeE--E----eeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCc-------EEE--
Confidence 9 79999999866443222 1 3789999999999999999 9999999999999999875432 111
Q ss_pred CCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeC--CCCCeeeEeeeccccccccccccCCCccceeeEEE
Q 010206 331 APGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM--DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 407 (515)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 407 (515)
..++.+|+..|..+.|+|...+|+++++ ++|++|+-.. .-.+.+++.+|... |++++|
T Consensus 143 ----~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~T---------------VW~~~F 203 (312)
T KOG0645|consen 143 ----IAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENT---------------VWSLAF 203 (312)
T ss_pred ----EeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccce---------------EEEEEe
Confidence 2347788899999999999999999986 9999998763 23467888888765 779999
Q ss_pred cCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEec-CCCCCcccc--CC-cc
Q 010206 408 SGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK-GADNSALDA--NG-NA 483 (515)
Q Consensus 408 s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~-~~~~~~~~~--~~-~~ 483 (515)
++.|..|+++++|++++||...+. .-..|..++..+.+. ...|++++.|+.+++++ ...+..... .. ..
T Consensus 204 ~~~G~rl~s~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~ 276 (312)
T KOG0645|consen 204 DNIGSRLVSCSDDGTVSIWRLYTD-----LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKE 276 (312)
T ss_pred cCCCceEEEecCCcceEeeeeccC-----cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhh
Confidence 999999999999999999997643 223567788888887 56899999999999932 222221111 11 22
Q ss_pred ccccCCeeEEEEcCC-CCEEEEEcCCc-EEEEe
Q 010206 484 FDFSMKLLHLAWHPS-ENSIACAASNS-LYMYY 514 (515)
Q Consensus 484 ~~~~~~i~~~~~s~~-~~~la~~~~~~-~~i~~ 514 (515)
..|...|++++|+|. .++|+++++|| +.+|.
T Consensus 277 ~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 277 GAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred cccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 357889999999996 78888888887 55554
No 34
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.8e-34 Score=242.58 Aligned_cols=284 Identities=18% Similarity=0.323 Sum_probs=231.3
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
..|++.|.-+.||++|+|||+++.|.+..+|++.... .++.+.++.+|.
T Consensus 221 ~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~--------------------~~kl~~tlvgh~----------- 269 (519)
T KOG0293|consen 221 QDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDV--------------------HFKLKKTLVGHS----------- 269 (519)
T ss_pred hhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCc--------------------ceeeeeeeeccc-----------
Confidence 3699999999999999999999999999999986543 345778889998
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
.+|..|.| +||+++|++++.|..+.+||+.++......
T Consensus 270 -~~V~yi~w--SPDdryLlaCg~~e~~~lwDv~tgd~~~~y--------------------------------------- 307 (519)
T KOG0293|consen 270 -QPVSYIMW--SPDDRYLLACGFDEVLSLWDVDTGDLRHLY--------------------------------------- 307 (519)
T ss_pred -CceEEEEE--CCCCCeEEecCchHheeeccCCcchhhhhc---------------------------------------
Confidence 89999999 556789999999999999999998643321
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccc
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 270 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 270 (515)
..++...+.+.+|.|||..|++| .|+++..||++... ..
T Consensus 308 --------------------------------------~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~- 347 (519)
T KOG0293|consen 308 --------------------------------------PSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LG- 347 (519)
T ss_pred --------------------------------------ccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hh-
Confidence 12345678899999999999999 79999999997432 21
Q ss_pred eecccCcccccc-CCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 271 IVDVKPANMEDL-TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 271 ~~~~~~~~~~~~-~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
..++- ...|.+++..+|| ..+++.+.|..|++|+..+..... .. .-..+|+++.
T Consensus 348 -------~W~gvr~~~v~dlait~Dg-k~vl~v~~d~~i~l~~~e~~~dr~----li-------------se~~~its~~ 402 (519)
T KOG0293|consen 348 -------NWEGVRDPKVHDLAITYDG-KYVLLVTVDKKIRLYNREARVDRG----LI-------------SEEQPITSFS 402 (519)
T ss_pred -------cccccccceeEEEEEcCCC-cEEEEEecccceeeechhhhhhhc----cc-------------cccCceeEEE
Confidence 22222 3568999999999 888888899999999987754321 11 1125799999
Q ss_pred EccCCCEEEEE-cCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcC-CCCEEEEecCCCcEEEEe
Q 010206 350 FARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 350 ~s~~~~~l~s~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~s~dg~i~iw~ 427 (515)
.|.+++++++. .+..+++||+. +.+.+..+.+|..... +..-||.. +..++++||+|+.|+||+
T Consensus 403 iS~d~k~~LvnL~~qei~LWDl~-e~~lv~kY~Ghkq~~f-------------iIrSCFgg~~~~fiaSGSED~kvyIWh 468 (519)
T KOG0293|consen 403 ISKDGKLALVNLQDQEIHLWDLE-ENKLVRKYFGHKQGHF-------------IIRSCFGGGNDKFIASGSEDSKVYIWH 468 (519)
T ss_pred EcCCCcEEEEEcccCeeEEeecc-hhhHHHHhhcccccce-------------EEEeccCCCCcceEEecCCCceEEEEE
Confidence 99999998885 45899999999 4888889988875422 23456654 457999999999999999
Q ss_pred cCCCCcceeeeccCCCceeeEEECCCCC-eeEeecCCCeEEE
Q 010206 428 CSEGSAESTTLEASKNPMRRQVQTPSRP-SRPLGSLSGVVRR 468 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v~l 468 (515)
..++ .++.+|.+|...|+++++.|..+ .+||+|.||+||+
T Consensus 469 r~sg-kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRI 509 (519)
T KOG0293|consen 469 RISG-KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRI 509 (519)
T ss_pred ccCC-ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEE
Confidence 9988 67799999999999999999776 5899999999999
No 35
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.7e-33 Score=235.82 Aligned_cols=295 Identities=14% Similarity=0.259 Sum_probs=244.8
Q ss_pred cccCCccceeeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCC
Q 010206 83 SMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAA 162 (515)
Q Consensus 83 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 162 (515)
...|+..+++...+.+|. +.|.++++ .+.+++|++|+.|++++|||+.+++++..
T Consensus 134 rPeWHapwKl~rVi~gHl------------gWVr~vav--dP~n~wf~tgs~DrtikIwDlatg~Lklt----------- 188 (460)
T KOG0285|consen 134 RPEWHAPWKLYRVISGHL------------GWVRSVAV--DPGNEWFATGSADRTIKIWDLATGQLKLT----------- 188 (460)
T ss_pred CccccCcceehhhhhhcc------------ceEEEEee--CCCceeEEecCCCceeEEEEcccCeEEEe-----------
Confidence 345788888999999998 99999999 45567999999999999999999875443
Q ss_pred CCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEe
Q 010206 163 GNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISN 242 (515)
Q Consensus 163 ~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 242 (515)
+.+|...|..+++
T Consensus 189 -------------------------------------------------------------------ltGhi~~vr~vav 201 (460)
T KOG0285|consen 189 -------------------------------------------------------------------LTGHIETVRGVAV 201 (460)
T ss_pred -------------------------------------------------------------------ecchhheeeeeee
Confidence 3578889999999
Q ss_pred cCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCccccccc
Q 010206 243 NSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT 321 (515)
Q Consensus 243 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 321 (515)
++...+|+++ .|+.|+.||++..+.. +.+.+|-..|+|++.+|.- ..|++|+.|..+|+||+|+...+
T Consensus 202 S~rHpYlFs~gedk~VKCwDLe~nkvI--------R~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V-- 270 (460)
T KOG0285|consen 202 SKRHPYLFSAGEDKQVKCWDLEYNKVI--------RHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASV-- 270 (460)
T ss_pred cccCceEEEecCCCeeEEEechhhhhH--------HHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccceE--
Confidence 9999999998 8999999999976544 2678999999999999998 89999999999999999987542
Q ss_pred ccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCcc
Q 010206 322 HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIF 400 (515)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (515)
.++.||..+|..+.+.|-...+++|+ |++|++||++. ++...++..|...
T Consensus 271 --------------~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~a-gkt~~tlt~hkks-------------- 321 (460)
T KOG0285|consen 271 --------------HVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRA-GKTMITLTHHKKS-------------- 321 (460)
T ss_pred --------------EEecCCCCcceeEEeecCCCceEEecCCceEEEeeecc-CceeEeeecccce--------------
Confidence 23788999999999999777888887 59999999996 8888888888765
Q ss_pred ceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE---ecCCCCCcc
Q 010206 401 DKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR---VKGADNSAL 477 (515)
Q Consensus 401 ~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l---~~~~~~~~~ 477 (515)
|.+++.+|....+|+++.| .|+-|++..+. ..+.+.+|...++.+....|+ ++++|+..|.+.+ .++.+....
T Consensus 322 -vral~lhP~e~~fASas~d-nik~w~~p~g~-f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~ 397 (460)
T KOG0285|consen 322 -VRALCLHPKENLFASASPD-NIKQWKLPEGE-FLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRG 397 (460)
T ss_pred -eeEEecCCchhhhhccCCc-cceeccCCccc-hhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccc
Confidence 4589999999999999987 58999999884 446699999999999987765 7889999999988 334443322
Q ss_pred c--cCCccccccCCeeEEEEcCCCCEEEEEc-CCcEEEE
Q 010206 478 D--ANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMY 513 (515)
Q Consensus 478 ~--~~~~~~~~~~~i~~~~~s~~~~~la~~~-~~~~~i~ 513 (515)
+ .....+..+..|++.+|...|..|+++. +..|.+|
T Consensus 398 ~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ 436 (460)
T KOG0285|consen 398 QTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMY 436 (460)
T ss_pred cccccCCccccccceeEEeecccCceEEeccCCcceEEE
Confidence 1 1222345577899999999999999776 5557776
No 36
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1e-32 Score=252.57 Aligned_cols=386 Identities=14% Similarity=0.180 Sum_probs=286.3
Q ss_pred cccccchhhhhccccc-ccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccce
Q 010206 13 QPLEWKFSQVFGERTA-GEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR 91 (515)
Q Consensus 13 ~~~~w~~~~~~~~~~~-~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (515)
+...|++.. |+... .........|+|++-+|+.-+||+|..||.|+||+..++.
T Consensus 44 ~vn~WdlRt--ge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~----------------------- 98 (888)
T KOG0306|consen 44 QVNIWDLRT--GEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEE----------------------- 98 (888)
T ss_pred cEeEEeeec--chhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCc-----------------------
Confidence 456698875 32111 1122344689999999999999999999999999988664
Q ss_pred eeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCC
Q 010206 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (515)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (515)
....+.+|. ..|+.+.| +..|.+|++|+.|+.|.+||+-...-......+. ..+.
T Consensus 99 ~~~tfngHK------------~AVt~l~f--d~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHk--------d~iT--- 153 (888)
T KOG0306|consen 99 ILITFNGHK------------AAVTTLKF--DKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHK--------DSIT--- 153 (888)
T ss_pred eeeeecccc------------cceEEEEE--cccCceEeecCCCccEEEEEeccceeeEEeecch--------HHHh---
Confidence 336789998 89999999 7788899999999999999998766444444331 2222
Q ss_pred CcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEE
Q 010206 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 251 (515)
Q Consensus 172 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 251 (515)
.+.|..+.+.+ ++.+.|+.|++|| +.. ..|..+ .-.|...+..+++.+ +.+++
T Consensus 154 ----~~~F~~~~~~l------------vS~sKDs~iK~Wd--L~t------qhCf~T-hvd~r~Eiw~l~~~~--~~lvt 206 (888)
T KOG0306|consen 154 ----QALFLNGDSFL------------VSVSKDSMIKFWD--LET------QHCFET-HVDHRGEIWALVLDE--KLLVT 206 (888)
T ss_pred ----HHhccCCCeEE------------EEeccCceEEEEe--ccc------ceeeeE-EecccceEEEEEEec--ceEEE
Confidence 44455555555 9999999999999 332 233333 357899999999987 56666
Q ss_pred e-CCCcEEEEeCCCC-----------------------------------------------------------------
Q 010206 252 A-DDLRINLWNLEIS----------------------------------------------------------------- 265 (515)
Q Consensus 252 ~-~d~~i~iwd~~~~----------------------------------------------------------------- 265 (515)
+ .|+.+++|++...
T Consensus 207 ~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk 286 (888)
T KOG0306|consen 207 AGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKK 286 (888)
T ss_pred EecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHH
Confidence 6 8999999998211
Q ss_pred ----------------------------------------------Ccccce----------ec----ccC---------
Q 010206 266 ----------------------------------------------NQSFNI----------VD----VKP--------- 276 (515)
Q Consensus 266 ----------------------------------------------~~~~~~----------~~----~~~--------- 276 (515)
.....+ .. .++
T Consensus 287 ~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~ 366 (888)
T KOG0306|consen 287 LKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSN 366 (888)
T ss_pred HHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccce
Confidence 000000 00 011
Q ss_pred ccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCE
Q 010206 277 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH 356 (515)
Q Consensus 277 ~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 356 (515)
..+.+|...|++++++.+. ..++ .+..+.+++|+..+.+++ +++.. +.+.+..|-|.+++
T Consensus 367 i~~~GHR~dVRsl~vS~d~-~~~~-Sga~~SikiWn~~t~kci----RTi~~--------------~y~l~~~Fvpgd~~ 426 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDS-ILLA-SGAGESIKIWNRDTLKCI----RTITC--------------GYILASKFVPGDRY 426 (888)
T ss_pred eeeccchhheeEEEeecCc-eeee-ecCCCcEEEEEccCccee----EEecc--------------ccEEEEEecCCCce
Confidence 2346788999999999886 4444 455678999999988764 33332 46888999999999
Q ss_pred EEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCC---
Q 010206 357 ILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS--- 432 (515)
Q Consensus 357 l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~--- 432 (515)
++.|.. |.+.+||+.. ...+.+...|.+. +++++.+||++.+++||.|.+|++||..--.
T Consensus 427 Iv~G~k~Gel~vfdlaS-~~l~Eti~AHdga---------------IWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~ 490 (888)
T KOG0306|consen 427 IVLGTKNGELQVFDLAS-ASLVETIRAHDGA---------------IWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVP 490 (888)
T ss_pred EEEeccCCceEEEEeeh-hhhhhhhhccccc---------------eeeeeecCCCCceEEecCCcEEEEEeEEEEeccC
Confidence 999988 9999999996 8888888889876 6799999999999999999999999975211
Q ss_pred -cceeeec-------cCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEE
Q 010206 433 -AESTTLE-------ASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIAC 504 (515)
Q Consensus 433 -~~~~~~~-------~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~ 504 (515)
.....+. .-.+.+-++.+|||+++|+.+=-|.+|+++--. ...+...+.+|.-+|.+|..|||++.+++
T Consensus 491 gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflD---tlKFflsLYGHkLPV~smDIS~DSklivT 567 (888)
T KOG0306|consen 491 GTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLD---TLKFFLSLYGHKLPVLSMDISPDSKLIVT 567 (888)
T ss_pred cccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEec---ceeeeeeecccccceeEEeccCCcCeEEe
Confidence 1111111 224678899999999999999999999981111 11244456789999999999999999998
Q ss_pred Ec-CCcEEEEe
Q 010206 505 AA-SNSLYMYY 514 (515)
Q Consensus 505 ~~-~~~~~i~~ 514 (515)
++ +.++.+|-
T Consensus 568 gSADKnVKiWG 578 (888)
T KOG0306|consen 568 GSADKNVKIWG 578 (888)
T ss_pred ccCCCceEEec
Confidence 87 55699984
No 37
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.8e-32 Score=220.34 Aligned_cols=287 Identities=16% Similarity=0.316 Sum_probs=222.1
Q ss_pred ccccccceEEEEECCC-CCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeec-ccCCCccccccc
Q 010206 31 EVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-QSHEPEFDYLKS 108 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~-g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~ 108 (515)
..+|.+.|..++|+|- |..||+++.|..|+||+...+. .+.+...+ .+|.
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~--------------------s~~ck~vld~~hk-------- 61 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD--------------------SWTCKTVLDDGHK-------- 61 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC--------------------cEEEEEeccccch--------
Confidence 3479999999999998 8999999999999999987422 12233333 3566
Q ss_pred ccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccc
Q 010206 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (515)
Q Consensus 109 ~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~ 188 (515)
..|++++|+ |.|++|++++.|.++.||.-..++...+.
T Consensus 62 ----rsVRsvAws--p~g~~La~aSFD~t~~Iw~k~~~efecv~------------------------------------ 99 (312)
T KOG0645|consen 62 ----RSVRSVAWS--PHGRYLASASFDATVVIWKKEDGEFECVA------------------------------------ 99 (312)
T ss_pred ----heeeeeeec--CCCcEEEEeeccceEEEeecCCCceeEEe------------------------------------
Confidence 889999995 55779999999999999987655432221
Q ss_pred ccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCc
Q 010206 189 NFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
. +.+|...|.|++|+++|.+||++ .|..|-+|.+.....
T Consensus 100 ---------------------------------------~-lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE 139 (312)
T KOG0645|consen 100 ---------------------------------------T-LEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE 139 (312)
T ss_pred ---------------------------------------e-eeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc
Confidence 1 57999999999999999999999 899999999984443
Q ss_pred ccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 347 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (515)
+... ..++.|...|..+.|+|.. .+|++++.|.+|++|+-..+.- ++ ....+.+|...|.+
T Consensus 140 -fec~----aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~ddd-------W~------c~~tl~g~~~TVW~ 200 (312)
T KOG0645|consen 140 -FECI----AVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDDD-------WE------CVQTLDGHENTVWS 200 (312)
T ss_pred -EEEE----eeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCCC-------ee------EEEEecCccceEEE
Confidence 2222 2678899999999999997 8999999999999998763210 11 12236778889999
Q ss_pred EEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEE
Q 010206 348 IKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 426 (515)
Q Consensus 348 ~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw 426 (515)
++|++.|..|+++++ ++++||.....-. ..|... ++.++|. ...|++++.|+.|++|
T Consensus 201 ~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~-----~~~sr~---------------~Y~v~W~--~~~IaS~ggD~~i~lf 258 (312)
T KOG0645|consen 201 LAFDNIGSRLVSCSDDGTVSIWRLYTDLS-----GMHSRA---------------LYDVPWD--NGVIASGGGDDAIRLF 258 (312)
T ss_pred EEecCCCceEEEecCCcceEeeeeccCcc-----hhcccc---------------eEeeeec--ccceEeccCCCEEEEE
Confidence 999999999999987 9999998653100 011111 3378887 5579999999999999
Q ss_pred ecCCCC--cc----eeeeccCCCceeeEEECCC-CCeeEeecCCCeEEE
Q 010206 427 GCSEGS--AE----STTLEASKNPMRRQVQTPS-RPSRPLGSLSGVVRR 468 (515)
Q Consensus 427 ~~~~~~--~~----~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~v~l 468 (515)
.-...- .. ...-..|...|+++++.|. ...|++|+.||.+++
T Consensus 259 ~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~ 307 (312)
T KOG0645|consen 259 KESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNF 307 (312)
T ss_pred EecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEE
Confidence 876421 11 1233588899999999995 678999999999998
No 38
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-33 Score=237.74 Aligned_cols=277 Identities=16% Similarity=0.228 Sum_probs=229.5
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
.+|+.+-|+|.. ...++++.|.+|++||..++++...
T Consensus 109 ~~vt~v~~hp~~--~~v~~as~d~tikv~D~~tg~~e~~----------------------------------------- 145 (406)
T KOG0295|consen 109 SSVTRVIFHPSE--ALVVSASEDATIKVFDTETGELERS----------------------------------------- 145 (406)
T ss_pred cceeeeeeccCc--eEEEEecCCceEEEEEccchhhhhh-----------------------------------------
Confidence 889999997654 4788888999999999998864111
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
+.+|...+.+++|+..|++|+++ .|-.+.+||..+.....+
T Consensus 146 -------------------------------------LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~k- 187 (406)
T KOG0295|consen 146 -------------------------------------LRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIK- 187 (406)
T ss_pred -------------------------------------hhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHH-
Confidence 46888999999999999999998 788899999986433332
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
.+.+|...|.++.|-|.| .++++++.|.+|+.|++.++..+. ++.+|...|..++.+
T Consensus 188 ------s~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~----------------t~~~h~ewvr~v~v~ 244 (406)
T KOG0295|consen 188 ------SLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVK----------------TFPGHSEWVRMVRVN 244 (406)
T ss_pred ------HhcCcccceeeEEEEecC-CeeeecccccceeEEecccceeEE----------------eccCchHhEEEEEec
Confidence 667899999999999999 999999999999999999987632 267788899999999
Q ss_pred cCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCC---------------CCEEE
Q 010206 352 RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD---------------GGRVA 415 (515)
Q Consensus 352 ~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---------------~~~l~ 415 (515)
.||..+++++. .+|++|-+.+ +++...+..|+..+. +++|-|. ++++.
T Consensus 245 ~DGti~As~s~dqtl~vW~~~t-~~~k~~lR~hEh~vE---------------ci~wap~~~~~~i~~at~~~~~~~~l~ 308 (406)
T KOG0295|consen 245 QDGTIIASCSNDQTLRVWVVAT-KQCKAELREHEHPVE---------------CIAWAPESSYPSISEATGSTNGGQVLG 308 (406)
T ss_pred CCeeEEEecCCCceEEEEEecc-chhhhhhhccccceE---------------EEEecccccCcchhhccCCCCCccEEE
Confidence 99999999875 9999999997 888888888887754 4444332 46999
Q ss_pred EecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEE
Q 010206 416 TGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAW 495 (515)
Q Consensus 416 s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 495 (515)
+++.|++|++||+.++. .+.+|.+|.+.|+.++|+|.|+||+|+..|+++++++-.... -......|...+++++|
T Consensus 309 s~SrDktIk~wdv~tg~-cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~---cmk~~~ah~hfvt~lDf 384 (406)
T KOG0295|consen 309 SGSRDKTIKIWDVSTGM-CLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ---CMKTLEAHEHFVTSLDF 384 (406)
T ss_pred eecccceEEEEeccCCe-EEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccce---eeeccCCCcceeEEEec
Confidence 99999999999999984 448999999999999999999999999999999993322222 11122257889999999
Q ss_pred cCCCCEEEEEcCCc-EEEE
Q 010206 496 HPSENSIACAASNS-LYMY 513 (515)
Q Consensus 496 s~~~~~la~~~~~~-~~i~ 513 (515)
+.+..++++|+-+. ..+|
T Consensus 385 h~~~p~VvTGsVdqt~Kvw 403 (406)
T KOG0295|consen 385 HKTAPYVVTGSVDQTVKVW 403 (406)
T ss_pred CCCCceEEeccccceeeee
Confidence 99999999998554 6666
No 39
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=4.7e-32 Score=246.89 Aligned_cols=280 Identities=23% Similarity=0.393 Sum_probs=228.5
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
.+|.++|++++|+|++++|++++.||.|++|++.+++. ...+..|.
T Consensus 6 ~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~-----------------------~~~~~~~~----------- 51 (289)
T cd00200 6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL-----------------------LRTLKGHT----------- 51 (289)
T ss_pred cccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc-----------------------EEEEecCC-----------
Confidence 47999999999999999999999999999999876542 23455666
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
..+..+.|+| +++.+++++.|+.|++|++.+++....
T Consensus 52 -~~i~~~~~~~--~~~~l~~~~~~~~i~i~~~~~~~~~~~---------------------------------------- 88 (289)
T cd00200 52 -GPVRDVAASA--DGTYLASGSSDKTIRLWDLETGECVRT---------------------------------------- 88 (289)
T ss_pred -cceeEEEECC--CCCEEEEEcCCCeEEEEEcCcccceEE----------------------------------------
Confidence 6788999954 456999999999999999986531111
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccc
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 270 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 270 (515)
+..|...+.++.|++++++++++ .++.|.+||+++.+...
T Consensus 89 --------------------------------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~- 129 (289)
T cd00200 89 --------------------------------------LTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT- 129 (289)
T ss_pred --------------------------------------EeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE-
Confidence 23556789999999998888888 59999999998655432
Q ss_pred eecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEE
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 350 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (515)
.+..|...+.+++|+|++ .++++++.++.|++||+++++... . +..|...+.++.|
T Consensus 130 -------~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~~----~------------~~~~~~~i~~~~~ 185 (289)
T cd00200 130 -------TLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKCVA----T------------LTGHTGEVNSVAF 185 (289)
T ss_pred -------EeccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEccccccce----e------------EecCccccceEEE
Confidence 345688899999999997 788888889999999998765422 1 3345578999999
Q ss_pred ccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecC
Q 010206 351 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 351 s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~ 429 (515)
+|+++.+++++ ++.|++||+.. .+.+..+..+... +.+++|+|++.++++++.||.|++|++.
T Consensus 186 ~~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~---------------i~~~~~~~~~~~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 186 SPDGEKLLSSSSDGTIKLWDLST-GKCLGTLRGHENG---------------VNSVAFSPDGYLLASGSEDGTIRVWDLR 249 (289)
T ss_pred CCCcCEEEEecCCCcEEEEECCC-CceecchhhcCCc---------------eEEEEEcCCCcEEEEEcCCCcEEEEEcC
Confidence 99998888876 59999999986 6666666555433 4589999999999999889999999998
Q ss_pred CCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 430 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 430 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
++ .....+..|...+..+.++|+++++++++.|+.+++
T Consensus 250 ~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 287 (289)
T cd00200 250 TG-ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRI 287 (289)
T ss_pred Cc-eeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEe
Confidence 76 455677899999999999999999999999999987
No 40
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-32 Score=216.68 Aligned_cols=276 Identities=17% Similarity=0.297 Sum_probs=229.7
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
..|+++|.++.|+-||+|.++++.|.+|++|+...+. ++.++.+|.
T Consensus 14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~-----------------------liktYsghG----------- 59 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA-----------------------LIKTYSGHG----------- 59 (307)
T ss_pred cccccceEEEEEccCCCEEEEcCCCceEEeecccccc-----------------------eeeeecCCC-----------
Confidence 4688999999999999999999999999999987665 557888887
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
..|..++. +.|+..|++++.|+.+.+||+.+++....
T Consensus 60 -~EVlD~~~--s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr---------------------------------------- 96 (307)
T KOG0316|consen 60 -HEVLDAAL--SSDNSKFASCGGDKAVQVWDVNTGKVDRR---------------------------------------- 96 (307)
T ss_pred -ceeeeccc--cccccccccCCCCceEEEEEcccCeeeee----------------------------------------
Confidence 66999888 56677999999999999999999874332
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccc
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 270 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 270 (515)
+.+|...|+.+.|+.+...+++| -|.++++||-++......
T Consensus 97 --------------------------------------~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePi 138 (307)
T KOG0316|consen 97 --------------------------------------FRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPI 138 (307)
T ss_pred --------------------------------------cccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCcc
Confidence 35888999999999999999999 799999999986543211
Q ss_pred eecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEE
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 350 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (515)
+.+....+.|.++.... ..|++|+.||++|.||+|.|.+...+ ...+|+++.|
T Consensus 139 ------Qildea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~sDy------------------~g~pit~vs~ 191 (307)
T KOG0316|consen 139 ------QILDEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSSDY------------------FGHPITSVSF 191 (307)
T ss_pred ------chhhhhcCceeEEEecc---cEEEeeccCCcEEEEEeecceeehhh------------------cCCcceeEEe
Confidence 24455678899998874 57999999999999999999764221 1258999999
Q ss_pred ccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecC
Q 010206 351 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 351 s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~ 429 (515)
+++++..++++- +++++.|-.+ ++.++.+++|.....+ ..++++.....+++|++||.|++||+.
T Consensus 192 s~d~nc~La~~l~stlrLlDk~t-GklL~sYkGhkn~eyk-------------ldc~l~qsdthV~sgSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 192 SKDGNCSLASSLDSTLRLLDKET-GKLLKSYKGHKNMEYK-------------LDCCLNQSDTHVFSGSEDGKVYFWDLV 257 (307)
T ss_pred cCCCCEEEEeeccceeeecccch-hHHHHHhcccccceee-------------eeeeecccceeEEeccCCceEEEEEec
Confidence 999999888774 9999999997 9999999999876442 367888888899999999999999999
Q ss_pred CCCcceeeeccCCCc-eeeEEECCCCCeeEeecCCC
Q 010206 430 EGSAESTTLEASKNP-MRRQVQTPSRPSRPLGSLSG 464 (515)
Q Consensus 430 ~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~s~~~d~ 464 (515)
.. .++..+..+..+ +..+.++|...-++++...+
T Consensus 258 d~-~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~ 292 (307)
T KOG0316|consen 258 DE-TQISKLSVVSTVIVTDLSCHPTMDDFITATGHG 292 (307)
T ss_pred cc-eeeeeeccCCceeEEeeecccCccceeEecCCc
Confidence 77 566788888887 89999999887766665443
No 41
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-32 Score=255.49 Aligned_cols=295 Identities=16% Similarity=0.214 Sum_probs=242.8
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccc
Q 010206 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (515)
.+..|..++|+|...+++++-..|.|.+||..-+. ++..|..|+ +
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t-----------------------li~rFdeHd------------G 52 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT-----------------------LIDRFDEHD------------G 52 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhh-----------------------HHhhhhccC------------C
Confidence 45789999999999999999999999999998766 346688888 9
Q ss_pred eeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccC
Q 010206 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (515)
Q Consensus 114 ~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~ 193 (515)
+|+.++|+|..+ .|++|+.|..|++|+..+.++...
T Consensus 53 pVRgv~FH~~qp--lFVSGGDDykIkVWnYk~rrclft------------------------------------------ 88 (1202)
T KOG0292|consen 53 PVRGVDFHPTQP--LFVSGGDDYKIKVWNYKTRRCLFT------------------------------------------ 88 (1202)
T ss_pred ccceeeecCCCC--eEEecCCccEEEEEecccceehhh------------------------------------------
Confidence 999999987655 999999999999999987653221
Q ss_pred CCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccccee
Q 010206 194 SNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 272 (515)
Q Consensus 194 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 272 (515)
+.+|-..|+.+.|++.-.+++++ +|.+|+||+..+.+...
T Consensus 89 ------------------------------------L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~ia--- 129 (1202)
T KOG0292|consen 89 ------------------------------------LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIA--- 129 (1202)
T ss_pred ------------------------------------hccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEE---
Confidence 46899999999999999999998 89999999999777553
Q ss_pred cccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccce-------------eeeccCCCcccccc
Q 010206 273 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL-------------FEEQEAPGTRSFFT 339 (515)
Q Consensus 273 ~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~ 339 (515)
.+.+|...|.|..|+|.. .++++++-|.+||+||+...+........ +-+..+.--+.++.
T Consensus 130 -----vltGHnHYVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLE 203 (1202)
T KOG0292|consen 130 -----VLTGHNHYVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLE 203 (1202)
T ss_pred -----EEecCceEEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeec
Confidence 678999999999999987 89999999999999998654322111111 11111222356789
Q ss_pred ccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCC-CCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEe
Q 010206 340 EIIASISDIKFARNGRHILSRDY-MTLKLWDINMD-SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 417 (515)
Q Consensus 340 ~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 417 (515)
||...|+-++|+|.-.++++|+| ..|++|.+... .-.+.+..+|.+. |.++-|+|..++|++.
T Consensus 204 GHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nn---------------Vssvlfhp~q~lIlSn 268 (1202)
T KOG0292|consen 204 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNN---------------VSSVLFHPHQDLILSN 268 (1202)
T ss_pred ccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCC---------------cceEEecCccceeEec
Confidence 99999999999999999999876 99999999741 1245677777765 4599999999999999
Q ss_pred cCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 418 SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 418 s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
|+|++|++||+... .-++++....+..+.++.+|....++.|-..|.+-+
T Consensus 269 sEDksirVwDm~kR-t~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VF 318 (1202)
T KOG0292|consen 269 SEDKSIRVWDMTKR-TSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVF 318 (1202)
T ss_pred CCCccEEEEecccc-cceeeeeccCCeEEEEEecCCcceeeeecCCceEEE
Confidence 99999999999876 444788888889999999999999998877776654
No 42
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.7e-33 Score=233.03 Aligned_cols=293 Identities=16% Similarity=0.251 Sum_probs=238.9
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
++...-+.|..|||||+||++|+.||.|.||++.+++... .+ .|+....|.-++
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrK----DL-----------kYQAqd~fMMmd----------- 263 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRK----DL-----------KYQAQDNFMMMD----------- 263 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhh----hh-----------hhhhhcceeecc-----------
Confidence 4556778999999999999999999999999999887531 11 122222344444
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
..|.|+.| +.|...+++|+.||.|++|.+++|.+..
T Consensus 264 -~aVlci~F--SRDsEMlAsGsqDGkIKvWri~tG~ClR----------------------------------------- 299 (508)
T KOG0275|consen 264 -DAVLCISF--SRDSEMLASGSQDGKIKVWRIETGQCLR----------------------------------------- 299 (508)
T ss_pred -cceEEEee--cccHHHhhccCcCCcEEEEEEecchHHH-----------------------------------------
Confidence 88999999 6677899999999999999999875322
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccc
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 270 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 270 (515)
.|-..|...|+|+.|+.|+..++++ -|.++++.-+++++...
T Consensus 300 ------------------------------------rFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LK- 342 (508)
T KOG0275|consen 300 ------------------------------------RFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLK- 342 (508)
T ss_pred ------------------------------------HhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHH-
Confidence 2235789999999999999999998 79999999999887664
Q ss_pred eecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEE
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 350 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (515)
.+++|...|+...|.++| +.+++++.||+|++|+..+.++.. +|.... ...+|.++..
T Consensus 343 -------EfrGHsSyvn~a~ft~dG-~~iisaSsDgtvkvW~~KtteC~~----Tfk~~~----------~d~~vnsv~~ 400 (508)
T KOG0275|consen 343 -------EFRGHSSYVNEATFTDDG-HHIISASSDGTVKVWHGKTTECLS----TFKPLG----------TDYPVNSVIL 400 (508)
T ss_pred -------HhcCccccccceEEcCCC-CeEEEecCCccEEEecCcchhhhh----hccCCC----------CcccceeEEE
Confidence 678999999999999999 999999999999999999887643 232211 2256888888
Q ss_pred cc-CCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEec
Q 010206 351 AR-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 428 (515)
Q Consensus 351 s~-~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~ 428 (515)
-| +...++.+.. ++|.|.++. ++.++.+........ +..+++.||.|.++...++|+.++.|..
T Consensus 401 ~PKnpeh~iVCNrsntv~imn~q--GQvVrsfsSGkREgG------------dFi~~~lSpkGewiYcigED~vlYCF~~ 466 (508)
T KOG0275|consen 401 LPKNPEHFIVCNRSNTVYIMNMQ--GQVVRSFSSGKREGG------------DFINAILSPKGEWIYCIGEDGVLYCFSV 466 (508)
T ss_pred cCCCCceEEEEcCCCeEEEEecc--ceEEeeeccCCccCC------------ceEEEEecCCCcEEEEEccCcEEEEEEe
Confidence 77 4567777876 899999987 788888765433221 1237899999999999999999999999
Q ss_pred CCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 429 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 429 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.+| .+..++..|...+-.++.+|-...+|+-++||.+++
T Consensus 467 ~sG-~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKL 505 (508)
T KOG0275|consen 467 LSG-KLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKL 505 (508)
T ss_pred ecC-ceeeeeecccccccccccCcccchhhhhcccchhhh
Confidence 988 566899999999999999999999999999999887
No 43
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.8e-33 Score=224.43 Aligned_cols=280 Identities=14% Similarity=0.208 Sum_probs=235.5
Q ss_pred ccccccceEEEEECC---CCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccc
Q 010206 31 EVQEVDIISAIEFDK---SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~---~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (515)
-.+|+.+|-.++||| +|-+|++++.||.-.+-+-+++.. +.+|.+|.
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdw-----------------------igtfeghk------- 59 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDW-----------------------IGTFEGHK------- 59 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCc-----------------------EEeeeccC-------
Confidence 358999999999997 899999999999888877776664 47899998
Q ss_pred cccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccc
Q 010206 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (515)
Q Consensus 108 ~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~ 187 (515)
+.|.+... +.+...-++++.|-+-++||.-++....
T Consensus 60 -----gavw~~~l--~~na~~aasaaadftakvw~a~tgdelh------------------------------------- 95 (334)
T KOG0278|consen 60 -----GAVWSATL--NKNATRAASAAADFTAKVWDAVTGDELH------------------------------------- 95 (334)
T ss_pred -----cceeeeec--Cchhhhhhhhcccchhhhhhhhhhhhhh-------------------------------------
Confidence 88998888 5555577788899999999977664211
Q ss_pred cccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCC
Q 010206 188 RNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 266 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~ 266 (515)
...|..-|.+++|+.|.+.|++| .+..+++||++..+
T Consensus 96 ------------------------------------------sf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~ 133 (334)
T KOG0278|consen 96 ------------------------------------------SFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK 133 (334)
T ss_pred ------------------------------------------hhhhhheeeeEEecccchhhhccchHHHhhhhhccCCC
Confidence 13577789999999999999998 79999999998776
Q ss_pred cccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccccee
Q 010206 267 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 346 (515)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 346 (515)
... ..+.+|.+.|..+.|...+ +.|++++.|+.||+||.+++..+. .++-+ .+|+
T Consensus 134 App-------~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~v~----sL~~~-------------s~Vt 188 (334)
T KOG0278|consen 134 APP-------KEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTEVQ----SLEFN-------------SPVT 188 (334)
T ss_pred CCc-------hhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcEEE----EEecC-------------CCCc
Confidence 543 3778999999999999887 889999999999999999997643 23322 5799
Q ss_pred EEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEE
Q 010206 347 DIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 426 (515)
Q Consensus 347 ~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw 426 (515)
++.++++|++|..+..+.|.+||..+ -.+++.+..+-. |.+...+|+...++.|++|..++.|
T Consensus 189 SlEvs~dG~ilTia~gssV~Fwdaks-f~~lKs~k~P~n----------------V~SASL~P~k~~fVaGged~~~~kf 251 (334)
T KOG0278|consen 189 SLEVSQDGRILTIAYGSSVKFWDAKS-FGLLKSYKMPCN----------------VESASLHPKKEFFVAGGEDFKVYKF 251 (334)
T ss_pred ceeeccCCCEEEEecCceeEEecccc-ccceeeccCccc----------------cccccccCCCceEEecCcceEEEEE
Confidence 99999999999988888999999986 677777665433 3478899999999999999999999
Q ss_pred ecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 427 GCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
|..++..+..-.++|..||.++.|+|+|...++||+||+|||
T Consensus 252 Dy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirl 293 (334)
T KOG0278|consen 252 DYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRL 293 (334)
T ss_pred eccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEE
Confidence 999995554435899999999999999999999999999999
No 44
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.5e-32 Score=256.70 Aligned_cols=282 Identities=20% Similarity=0.330 Sum_probs=224.3
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|.++.| +++|..+++++.|+.+++|+....+. .
T Consensus 160 ~sv~~~~f--s~~g~~l~~~~~~~~i~~~~~~~~~~------~------------------------------------- 194 (456)
T KOG0266|consen 160 PSVTCVDF--SPDGRALAAASSDGLIRIWKLEGIKS------N------------------------------------- 194 (456)
T ss_pred CceEEEEE--cCCCCeEEEccCCCcEEEeecccccc------h-------------------------------------
Confidence 67899999 56677899999999999999854431 0
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
..+. +.+|...|++++|+|++++++++ .|++|++||+........
T Consensus 195 --------------------------------~~~~-l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~- 240 (456)
T KOG0266|consen 195 --------------------------------LLRE-LSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLK- 240 (456)
T ss_pred --------------------------------hhcc-ccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEE-
Confidence 0000 25788999999999999999999 899999999954433332
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
.+.+|...|++++|+|++ +++++|+.|++|++||+++++... .+.+|.+.|++++|+
T Consensus 241 ------~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~----------------~l~~hs~~is~~~f~ 297 (456)
T KOG0266|consen 241 ------TLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVR----------------KLKGHSDGISGLAFS 297 (456)
T ss_pred ------EecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEE----------------eeeccCCceEEEEEC
Confidence 678999999999999999 999999999999999999976532 367888999999999
Q ss_pred cCCCEEEEEcC-CeEEEEEeeCCCC--CeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEec
Q 010206 352 RNGRHILSRDY-MTLKLWDINMDSG--PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 428 (515)
Q Consensus 352 ~~~~~l~s~~~-~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~ 428 (515)
+++++|++++. +.|++||+.+ +. ++..+..+.... .++.++|+|++++|++++.|+.+++||+
T Consensus 298 ~d~~~l~s~s~d~~i~vwd~~~-~~~~~~~~~~~~~~~~-------------~~~~~~fsp~~~~ll~~~~d~~~~~w~l 363 (456)
T KOG0266|consen 298 PDGNLLVSASYDGTIRVWDLET-GSKLCLKLLSGAENSA-------------PVTSVQFSPNGKYLLSASLDRTLKLWDL 363 (456)
T ss_pred CCCCEEEEcCCCccEEEEECCC-CceeeeecccCCCCCC-------------ceeEEEECCCCcEEEEecCCCeEEEEEc
Confidence 99999999875 9999999997 55 355555554331 2569999999999999999999999999
Q ss_pred CCCCcceeeeccCCCc---eeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccc-cCCeeEEEEcCCCCEEEE
Q 010206 429 SEGSAESTTLEASKNP---MRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDF-SMKLLHLAWHPSENSIAC 504 (515)
Q Consensus 429 ~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~la~ 504 (515)
..+. ....+.+|... +.....++.++++.+|+.|+.|++ +.+..........+| ...+..++|+|..+++++
T Consensus 364 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~---~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s 439 (456)
T KOG0266|consen 364 RSGK-SVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYV---WDSSSGGILQRLEGHSKAAVSDLSSHPTENLIAS 439 (456)
T ss_pred cCCc-ceeeecccCCcceeEecccccCCCCeEEEEeCCceEEE---EeCCccchhhhhcCCCCCceeccccCCCcCeeee
Confidence 9874 44667777654 344455789999999999999999 322221233344467 789999999999999998
Q ss_pred Ec---CCcEEEEe
Q 010206 505 AA---SNSLYMYY 514 (515)
Q Consensus 505 ~~---~~~~~i~~ 514 (515)
++ +..+.+|.
T Consensus 440 ~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 440 SSFEGDGLIRLWK 452 (456)
T ss_pred cCcCCCceEEEec
Confidence 87 45577774
No 45
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=7.7e-31 Score=268.58 Aligned_cols=303 Identities=21% Similarity=0.339 Sum_probs=214.8
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
...|.+.|++++|+|+|++||+|+.|+.|+||+.......+.. ..+ ....+.++
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~--------------~~~-~~~~~~~~----------- 532 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRD--------------IHY-PVVELASR----------- 532 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccc--------------ccc-ceEEeccc-----------
Confidence 3458999999999999999999999999999997542110000 000 01112222
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|.+++|++. .+.+|++++.|++|++||+.+++....
T Consensus 533 --~~v~~l~~~~~-~~~~las~~~Dg~v~lWd~~~~~~~~~--------------------------------------- 570 (793)
T PLN00181 533 --SKLSGICWNSY-IKSQVASSNFEGVVQVWDVARSQLVTE--------------------------------------- 570 (793)
T ss_pred --CceeeEEeccC-CCCEEEEEeCCCeEEEEECCCCeEEEE---------------------------------------
Confidence 56899999753 356899999999999999887542211
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC-CCCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
+.+|...|.+++|+| ++.+|++| .|++|++||+++....
T Consensus 571 ---------------------------------------~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~ 611 (793)
T PLN00181 571 ---------------------------------------MKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI 611 (793)
T ss_pred ---------------------------------------ecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE
Confidence 357889999999997 78899998 8999999999876543
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
. .+. +...+.++.|++..+.+|++|+.||.|++||+++.... ...+.+|...|.++
T Consensus 612 ~--------~~~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~---------------~~~~~~h~~~V~~v 667 (793)
T PLN00181 612 G--------TIK-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLP---------------LCTMIGHSKTVSYV 667 (793)
T ss_pred E--------EEe-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCcc---------------ceEecCCCCCEEEE
Confidence 2 223 34578999996543389999999999999999875421 11245677899999
Q ss_pred EEccCCCEEEEEc-CCeEEEEEeeCC-----CCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCc
Q 010206 349 KFARNGRHILSRD-YMTLKLWDINMD-----SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 422 (515)
Q Consensus 349 ~~s~~~~~l~s~~-~~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~ 422 (515)
.|. ++.+|++++ |++|++||+... ..++..+.+|... +..++|+|++++|++|+.|+.
T Consensus 668 ~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~---------------i~~v~~s~~~~~lasgs~D~~ 731 (793)
T PLN00181 668 RFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNV---------------KNFVGLSVSDGYIATGSETNE 731 (793)
T ss_pred EEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCC---------------eeEEEEcCCCCEEEEEeCCCE
Confidence 997 677888876 599999999742 2456677777654 348999999999999999999
Q ss_pred EEEEecCCCCcceeeec-cCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCE
Q 010206 423 FRVFGCSEGSAESTTLE-ASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENS 501 (515)
Q Consensus 423 i~iw~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 501 (515)
|++|+....... ..+. .+...+..+ ....+...|.+++|+|++..
T Consensus 732 v~iw~~~~~~~~-~s~~~~~~~~~~~~---------------------------------~~~~~~~~V~~v~ws~~~~~ 777 (793)
T PLN00181 732 VFVYHKAFPMPV-LSYKFKTIDPVSGL---------------------------------EVDDASQFISSVCWRGQSST 777 (793)
T ss_pred EEEEECCCCCce-EEEecccCCccccc---------------------------------ccCCCCcEEEEEEEcCCCCe
Confidence 999998754211 1110 000000000 00113456888888888888
Q ss_pred EEEEcCCc-EEEEe
Q 010206 502 IACAASNS-LYMYY 514 (515)
Q Consensus 502 la~~~~~~-~~i~~ 514 (515)
|++|+.+| +.||.
T Consensus 778 lva~~~dG~I~i~~ 791 (793)
T PLN00181 778 LVAANSTGNIKILE 791 (793)
T ss_pred EEEecCCCcEEEEe
Confidence 88777555 77774
No 46
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=1.3e-32 Score=241.28 Aligned_cols=310 Identities=18% Similarity=0.260 Sum_probs=233.7
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|+..|+++++.|.|..|++|+.|..|++||+...... -+.++.+.-...|.
T Consensus 163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas----------------~~~fr~l~P~E~h~---------- 216 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS----------------MRSFRQLQPCETHQ---------- 216 (641)
T ss_pred ccCCceEEEEeeecCCCceeeeccccceEEEEeccccccc----------------chhhhccCcccccc----------
Confidence 4578899999999999999999999999999998754321 11222223334454
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
|++++|++ .+..|++.+.....+++|-.........+.. +++
T Consensus 217 ----i~sl~ys~--Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGD----------------------------QYI---- 258 (641)
T KOG0772|consen 217 ----INSLQYSV--TGDQILVVSGSAQAKLLDRDGFEIVEFSKGD----------------------------QYI---- 258 (641)
T ss_pred ----cceeeecC--CCCeEEEEecCcceeEEccCCceeeeeeccc----------------------------hhh----
Confidence 99999965 4558888888889999998776544432211 111
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCC-CEEEEe-CCCcEEEEeCCCCCcc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
-| +.+ .++|...++|.+|+|+. +.|+++ .||++++||++..+..
T Consensus 259 -------------------~D--m~n-------------TKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q 304 (641)
T KOG0772|consen 259 -------------------RD--MYN-------------TKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ 304 (641)
T ss_pred -------------------hh--hhc-------------cCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh
Confidence 11 000 47999999999999963 345565 8999999999987766
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccc--cee
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA--SIS 346 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~ 346 (515)
.+++. +....+..-++++++|+|++ .+||+|+.||.|.+|+.+....... . .+-..|.. .|+
T Consensus 305 ~qVik--~k~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~--~-----------~vk~AH~~g~~It 368 (641)
T KOG0772|consen 305 LQVIK--TKPAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPV--M-----------KVKDAHLPGQDIT 368 (641)
T ss_pred eeEEe--eccCCCcccCceeeecCCCc-chhhhcccCCceeeeecCCcccccc--e-----------EeeeccCCCCcee
Confidence 66553 33444567789999999999 8999999999999999865432111 1 11234555 899
Q ss_pred EEEEccCCCEEEEE-cCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecC------
Q 010206 347 DIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY------ 419 (515)
Q Consensus 347 ~~~~s~~~~~l~s~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~------ 419 (515)
||.||+||++|++. .|+++++||++...+++.+..+-... ++-+.++|||+.++|++|+.
T Consensus 369 si~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~-------------~~~tdc~FSPd~kli~TGtS~~~~~~ 435 (641)
T KOG0772|consen 369 SISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTP-------------FPGTDCCFSPDDKLILTGTSAPNGMT 435 (641)
T ss_pred EEEeccccchhhhccCCCceeeeeccccccchhhhcCCCcc-------------CCCCccccCCCceEEEecccccCCCC
Confidence 99999999999995 46999999999877787776544322 22347999999999999863
Q ss_pred CCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 420 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 420 dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.|.+.+||..+- ..++.+......|..+.|+|.-..+..|+.||++++
T Consensus 436 ~g~L~f~d~~t~-d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~v 483 (641)
T KOG0772|consen 436 AGTLFFFDRMTL-DTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHV 483 (641)
T ss_pred CceEEEEeccce-eeEEEecCCCceEEEEeecchhhheeeecCCCceEE
Confidence 578999998876 455777777889999999999999999999999998
No 47
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.2e-32 Score=221.94 Aligned_cols=278 Identities=18% Similarity=0.251 Sum_probs=224.7
Q ss_pred CCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEec
Q 010206 164 NGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNN 243 (515)
Q Consensus 164 ~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 243 (515)
.|.|+ ...|.|+|.++ ++++.|..|.+|++ ...+.. .. .+++|.+.|..+.|.
T Consensus 47 ~geI~-------~~~F~P~gs~~------------aSgG~Dr~I~LWnv--~gdceN-----~~-~lkgHsgAVM~l~~~ 99 (338)
T KOG0265|consen 47 KGEIY-------TIKFHPDGSCF------------ASGGSDRAIVLWNV--YGDCEN-----FW-VLKGHSGAVMELHGM 99 (338)
T ss_pred cceEE-------EEEECCCCCeE------------eecCCcceEEEEec--cccccc-----ee-eeccccceeEeeeec
Confidence 56677 88999999999 99999999999993 332221 11 147999999999999
Q ss_pred CCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccc
Q 010206 244 SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH 322 (515)
Q Consensus 244 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 322 (515)
+|+..++++ .|.+++.||.++++... .+++|...++++.-+.-|+.++.+++.|+++++||+|+....
T Consensus 100 ~d~s~i~S~gtDk~v~~wD~~tG~~~r--------k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~--- 168 (338)
T KOG0265|consen 100 RDGSHILSCGTDKTVRGWDAETGKRIR--------KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI--- 168 (338)
T ss_pred cCCCEEEEecCCceEEEEecccceeee--------hhccccceeeecCccccCCeEEEecCCCceEEEEeecccchh---
Confidence 999999998 89999999999988764 668899999999877677778899999999999999987653
Q ss_pred cceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccc
Q 010206 323 SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD 401 (515)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (515)
++++.. ..++++.|..++..+.+|. |+.|++||++. ...+.++.+|...
T Consensus 169 -~t~~~k-------------yqltAv~f~d~s~qv~sggIdn~ikvWd~r~-~d~~~~lsGh~Dt--------------- 218 (338)
T KOG0265|consen 169 -KTFENK-------------YQLTAVGFKDTSDQVISGGIDNDIKVWDLRK-NDGLYTLSGHADT--------------- 218 (338)
T ss_pred -hccccc-------------eeEEEEEecccccceeeccccCceeeecccc-CcceEEeecccCc---------------
Confidence 233222 3589999999999999976 59999999996 8899999999876
Q ss_pred eeeEEEcCCCCEEEEecCCCcEEEEecCCCC---cceeeeccCCCc----eeeEEECCCCCeeEeecCCCeEEEecCCCC
Q 010206 402 KFECCLSGDGGRVATGSYSNLFRVFGCSEGS---AESTTLEASKNP----MRRQVQTPSRPSRPLGSLSGVVRRVKGADN 474 (515)
Q Consensus 402 v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~---~~~~~~~~~~~~----v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~ 474 (515)
|+.+..+++|.++.+-+-|.++++||++..- ..+..+++|... .-...|+|++..+..|+.|+.+.+++..
T Consensus 219 It~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~-- 296 (338)
T KOG0265|consen 219 ITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTT-- 296 (338)
T ss_pred eeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecc--
Confidence 6699999999999999999999999997532 223556665432 3366889999999999999999993332
Q ss_pred CccccCCccccccCCeeEEEEcCCCCEEEEEcCCc-EEE
Q 010206 475 SALDANGNAFDFSMKLLHLAWHPSENSIACAASNS-LYM 512 (515)
Q Consensus 475 ~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~-~~i 512 (515)
...+.....+|.+.|++++|+|....|.+++.|. +++
T Consensus 297 -~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 297 -SRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred -cccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 2234445667999999999999999999666544 543
No 48
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.8e-32 Score=212.67 Aligned_cols=276 Identities=18% Similarity=0.262 Sum_probs=224.7
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
++|+++.| ..+|++.++++.|++|++|+...+.+.+.
T Consensus 18 gaV~avry--N~dGnY~ltcGsdrtvrLWNp~rg~likt----------------------------------------- 54 (307)
T KOG0316|consen 18 GAVRAVRY--NVDGNYCLTCGSDRTVRLWNPLRGALIKT----------------------------------------- 54 (307)
T ss_pred cceEEEEE--ccCCCEEEEcCCCceEEeecccccceeee-----------------------------------------
Confidence 89999999 67788999999999999999877654332
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
-.+|...|..++.+.|...|++| .|..+.+||+++++...
T Consensus 55 -------------------------------------YsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R-- 95 (307)
T KOG0316|consen 55 -------------------------------------YSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDR-- 95 (307)
T ss_pred -------------------------------------ecCCCceeeeccccccccccccCCCCceEEEEEcccCeeee--
Confidence 25788889999999999999998 89999999999988653
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
.+.+|.+.|+.++|+.+. ..+++|+.|..+++||.|.... ++++. +..-...|.++..+
T Consensus 96 ------r~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~--ePiQi------------ldea~D~V~Si~v~ 154 (307)
T KOG0316|consen 96 ------RFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSF--EPIQI------------LDEAKDGVSSIDVA 154 (307)
T ss_pred ------ecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCC--Cccch------------hhhhcCceeEEEec
Confidence 778999999999999988 8999999999999999988653 22223 33344679999887
Q ss_pred cCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCC
Q 010206 352 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 352 ~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~ 430 (515)
+..+++|+ ||+++.||++. +.....+.+|+ |++++|++|++.+..++-|+++++-|-.+
T Consensus 155 --~heIvaGS~DGtvRtydiR~-G~l~sDy~g~p-----------------it~vs~s~d~nc~La~~l~stlrLlDk~t 214 (307)
T KOG0316|consen 155 --EHEIVAGSVDGTVRTYDIRK-GTLSSDYFGHP-----------------ITSVSFSKDGNCSLASSLDSTLRLLDKET 214 (307)
T ss_pred --ccEEEeeccCCcEEEEEeec-ceeehhhcCCc-----------------ceeEEecCCCCEEEEeeccceeeecccch
Confidence 56788887 59999999997 77666666665 56999999999999999999999999998
Q ss_pred CCcceeeeccCCCceeeE--EECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCC-eeEEEEcCCCCEEEEEcC
Q 010206 431 GSAESTTLEASKNPMRRQ--VQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMK-LLHLAWHPSENSIACAAS 507 (515)
Q Consensus 431 ~~~~~~~~~~~~~~v~~~--~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~-i~~~~~s~~~~~la~~~~ 507 (515)
| +++...++|.+.-..+ ++......+++||+||.|.+ |.+..........-+... |.+++++|.-..+.++..
T Consensus 215 G-klL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~---wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~ 290 (307)
T KOG0316|consen 215 G-KLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYF---WDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG 290 (307)
T ss_pred h-HHHHHhcccccceeeeeeeecccceeEEeccCCceEEE---EEeccceeeeeeccCCceeEEeeecccCccceeEecC
Confidence 8 6778999998766554 55677789999999999999 333322222222223444 799999999999999998
Q ss_pred CcEEEEeC
Q 010206 508 NSLYMYYA 515 (515)
Q Consensus 508 ~~~~i~~~ 515 (515)
.+...|.+
T Consensus 291 ~~~~~~~~ 298 (307)
T KOG0316|consen 291 HGDLFWYQ 298 (307)
T ss_pred Cceeceee
Confidence 88888863
No 49
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=8.9e-32 Score=227.39 Aligned_cols=298 Identities=18% Similarity=0.263 Sum_probs=233.5
Q ss_pred ccccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccc
Q 010206 27 TAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (515)
Q Consensus 27 ~~~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 106 (515)
.+...+.|.+.|.++... ++++++|++||.++|||.... ....+.+|.
T Consensus 97 ~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk------------------------~~~~~~Ght------ 144 (423)
T KOG0313|consen 97 KPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK------------------------SIKTIVGHT------ 144 (423)
T ss_pred Cccccccchhhhhhhccc--CceEEEeecCCeeEEEecCCc------------------------eEEEEecCC------
Confidence 344567899999999988 779999999999999997654 335678898
Q ss_pred ccccccceeEEEEEeecCC-CcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCc
Q 010206 107 KSLEIEEKINKIRWCQSAN-SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (515)
Q Consensus 107 ~~~~~~~~v~~l~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 185 (515)
++|.+++|....+ ...|++++.|.++++|.++.++......
T Consensus 145 ------~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~-------------------------------- 186 (423)
T KOG0313|consen 145 ------GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKAL-------------------------------- 186 (423)
T ss_pred ------cceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHH--------------------------------
Confidence 8899898864322 2359999999999999988765211100
Q ss_pred cccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCC
Q 010206 186 GERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI 264 (515)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~ 264 (515)
.. ..||...|.++...+++..+++| .|.+|.+|+..+
T Consensus 187 -------------------------------------~~-----~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~ 224 (423)
T KOG0313|consen 187 -------------------------------------KV-----CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVET 224 (423)
T ss_pred -------------------------------------hH-----hcccccceeEEEecCCCCeEEeecccceeeecccCC
Confidence 00 24899999999999999999999 799999999322
Q ss_pred CC-ccccee----------------cccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceee
Q 010206 265 SN-QSFNIV----------------DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 327 (515)
Q Consensus 265 ~~-~~~~~~----------------~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 327 (515)
.. ...+-. ..+...+.+|.++|.++.|++. ..+++++.|.+|+.||+.++....+ ..
T Consensus 225 ~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~~----~~ 298 (423)
T KOG0313|consen 225 DEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKST----LT 298 (423)
T ss_pred CccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeecccceee----ee
Confidence 11 000000 0011367899999999999984 5899999999999999999876432 11
Q ss_pred eccCCCccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCC--CeeeEeeeccccccccccccCCCccceee
Q 010206 328 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSG--PVATFQVHEHLRPKLCDLYENDSIFDKFE 404 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 404 (515)
. ..++.++..+|..++|++|+ |..|++||.+++.. ..+.+.+|...+ .+
T Consensus 299 ~-------------~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwV---------------ss 350 (423)
T KOG0313|consen 299 T-------------NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWV---------------SS 350 (423)
T ss_pred c-------------CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhh---------------hh
Confidence 1 14689999999999999976 59999999987433 457788888874 48
Q ss_pred EEEcCCCCE-EEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecC
Q 010206 405 CCLSGDGGR-VATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKG 471 (515)
Q Consensus 405 ~~~s~~~~~-l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~ 471 (515)
+.|+|...+ |++|+.|+++++||+++.+..+..+.+|.+.|-++.|. ++.++++|+.|.++++.++
T Consensus 351 vkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 351 VKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred eecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEecc
Confidence 999997665 78999999999999999876778999999999999996 5678999999999999443
No 50
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.6e-32 Score=241.52 Aligned_cols=278 Identities=18% Similarity=0.233 Sum_probs=231.7
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
++|.++.++|..+ .++++-.+|.|.||+.++..+.+.+..
T Consensus 14 dRVKsVd~HPteP--w~la~LynG~V~IWnyetqtmVksfeV-------------------------------------- 53 (794)
T KOG0276|consen 14 DRVKSVDFHPTEP--WILAALYNGDVQIWNYETQTMVKSFEV-------------------------------------- 53 (794)
T ss_pred CceeeeecCCCCc--eEEEeeecCeeEEEecccceeeeeeee--------------------------------------
Confidence 8899999988766 999999999999999998765443321
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
..-+|++..|-+..+++++| +|..|++|+.++.++..
T Consensus 54 ----------------------------------------~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~-- 91 (794)
T KOG0276|consen 54 ----------------------------------------SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVK-- 91 (794)
T ss_pred ----------------------------------------cccchhhheeeeccceEEEecCCceEEEEecccceeeE--
Confidence 12466777788888999999 89999999999888664
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
.++.|.+.|++++.+|.. .++++++.|-.|++||-+..=.+ ..++.||...|++++|.
T Consensus 92 ------~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~wa~---------------~qtfeGH~HyVMqv~fn 149 (794)
T KOG0276|consen 92 ------TFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEWAC---------------EQTFEGHEHYVMQVAFN 149 (794)
T ss_pred ------EeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCceee---------------eeEEcCcceEEEEEEec
Confidence 778999999999999998 79999999999999999765332 23477888999999999
Q ss_pred c-CCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCC--CEEEEecCCCcEEEEe
Q 010206 352 R-NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG--GRVATGSYSNLFRVFG 427 (515)
Q Consensus 352 ~-~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~s~s~dg~i~iw~ 427 (515)
| |.+.+++++ |++|+||.+.. ..+..++.+|... |.++++-+-| .+|+||++|.+|+|||
T Consensus 150 PkD~ntFaS~sLDrTVKVWslgs-~~~nfTl~gHekG---------------VN~Vdyy~~gdkpylIsgaDD~tiKvWD 213 (794)
T KOG0276|consen 150 PKDPNTFASASLDRTVKVWSLGS-PHPNFTLEGHEKG---------------VNCVDYYTGGDKPYLISGADDLTIKVWD 213 (794)
T ss_pred CCCccceeeeeccccEEEEEcCC-CCCceeeeccccC---------------cceEEeccCCCcceEEecCCCceEEEee
Confidence 9 778899987 59999999986 8889999999876 4488887644 6999999999999999
Q ss_pred cCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcC
Q 010206 428 CSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS 507 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~ 507 (515)
..+..+. ++|++|...|..+.|+|.-+.+++||+||++||+..... .+...+.--..+|.+++-.+.++.+++|.+
T Consensus 214 yQtk~CV-~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty---~lE~tLn~gleRvW~I~~~k~~~~i~vG~D 289 (794)
T KOG0276|consen 214 YQTKSCV-QTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY---KLEKTLNYGLERVWCIAAHKGDGKIAVGFD 289 (794)
T ss_pred cchHHHH-HHhhcccccceEEEecCCCcEEEEecCCccEEEecCcce---ehhhhhhcCCceEEEEeecCCCCeEEEecc
Confidence 9987555 899999999999999999999999999999999332222 222222223578999999999999999999
Q ss_pred CcEEEEe
Q 010206 508 NSLYMYY 514 (515)
Q Consensus 508 ~~~~i~~ 514 (515)
++.++.+
T Consensus 290 eg~i~v~ 296 (794)
T KOG0276|consen 290 EGSVTVK 296 (794)
T ss_pred CCcEEEE
Confidence 9987765
No 51
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=6.9e-31 Score=211.79 Aligned_cols=288 Identities=17% Similarity=0.223 Sum_probs=225.4
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
...+|..+++-+.|+.+|.+|.+++.|..+.||-..+++ .+.++.+|.
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe-----------------------rlGty~GHt--------- 52 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE-----------------------RLGTYDGHT--------- 52 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc-----------------------eeeeecCCC---------
Confidence 456899999999999999999999999999999987776 447899999
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
+.|.++.. +.+.+++++|+.|.++++||+++|+.+...+..
T Consensus 53 ---GavW~~Di--d~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~---------------------------------- 93 (327)
T KOG0643|consen 53 ---GAVWCCDI--DWDSKHLITGSADQTAKLWDVETGKQLATWKTN---------------------------------- 93 (327)
T ss_pred ---ceEEEEEe--cCCcceeeeccccceeEEEEcCCCcEEEEeecC----------------------------------
Confidence 99999999 667789999999999999999999866553322
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-C-----CCcEEEEeCC
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-----DLRINLWNLE 263 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~-----d~~i~iwd~~ 263 (515)
..|..+.|+++|++++.+ + .+.|.++|++
T Consensus 94 ---------------------------------------------~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~ 128 (327)
T KOG0643|consen 94 ---------------------------------------------SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIR 128 (327)
T ss_pred ---------------------------------------------CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEcc
Confidence 567788899998888776 3 4678999998
Q ss_pred CCCcccceecccC-ccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccc
Q 010206 264 ISNQSFNIVDVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 342 (515)
Q Consensus 264 ~~~~~~~~~~~~~-~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (515)
....... .-.| ..+..+...++.+-|.|-+ ..|++|..||.|..||.++++.... ....|.
T Consensus 129 ~~~~~~~--s~ep~~kI~t~~skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~~v~---------------s~~~h~ 190 (327)
T KOG0643|consen 129 DDSSDID--SEEPYLKIPTPDSKITSALWGPLG-ETIIAGHEDGSISIYDARTGKELVD---------------SDEEHS 190 (327)
T ss_pred CChhhhc--ccCceEEecCCccceeeeeecccC-CEEEEecCCCcEEEEEcccCceeee---------------chhhhc
Confidence 4331100 0000 1345567889999999998 8999999999999999999864321 134577
Q ss_pred cceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEec-CC
Q 010206 343 ASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YS 420 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s-~d 420 (515)
..|+.+++++|..++++++. .+-++||+.+ -..++++..... |.+.+++|....++.|+ .+
T Consensus 191 ~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t-l~v~Kty~te~P----------------vN~aaisP~~d~VilgGGqe 253 (327)
T KOG0643|consen 191 SKINDLQFSRDRTYFITGSKDTTAKLVDVRT-LEVLKTYTTERP----------------VNTAAISPLLDHVILGGGQE 253 (327)
T ss_pred cccccccccCCcceEEecccCccceeeeccc-eeeEEEeeeccc----------------ccceecccccceEEecCCce
Confidence 89999999999999999875 9999999997 777888765432 44889999877776554 32
Q ss_pred C-cEEEEecCCC-----------CcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 421 N-LFRVFGCSEG-----------SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 421 g-~i~iw~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
- .|.-=+.+.+ .+.+..+++|..|+++++++|+|+..+||++||.||+
T Consensus 254 A~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~ 313 (327)
T KOG0643|consen 254 AMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRL 313 (327)
T ss_pred eeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEE
Confidence 1 1211122222 1233567799999999999999999999999999999
No 52
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.6e-32 Score=228.06 Aligned_cols=269 Identities=13% Similarity=0.254 Sum_probs=221.0
Q ss_pred ccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccc
Q 010206 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (515)
...+.|.|+.+. ...+++|..|++|+|||..+-. +...+.||.
T Consensus 195 e~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~-----------------------c~~~L~GHt------------ 237 (499)
T KOG0281|consen 195 ENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLE-----------------------CLKILTGHT------------ 237 (499)
T ss_pred ccCCceEEEEec--chhhhcccccCceEEeccccHH-----------------------HHHhhhcCC------------
Confidence 356889999985 4479999999999999986544 456788998
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
+.|.|+.|. ...+++|+.|.+|++||+++++....
T Consensus 238 GSVLCLqyd----~rviisGSSDsTvrvWDv~tge~l~t----------------------------------------- 272 (499)
T KOG0281|consen 238 GSVLCLQYD----ERVIVSGSSDSTVRVWDVNTGEPLNT----------------------------------------- 272 (499)
T ss_pred CcEEeeecc----ceEEEecCCCceEEEEeccCCchhhH-----------------------------------------
Confidence 999999993 45899999999999999999874332
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
+-+|...|..+.|+ ..+++++ .|.++.+||+..+.... +
T Consensus 273 -------------------------------------lihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it-~ 312 (499)
T KOG0281|consen 273 -------------------------------------LIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDIT-L 312 (499)
T ss_pred -------------------------------------HhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHH-H
Confidence 34678888888886 4478888 89999999998765321 1
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
. +.+.+|...|+.+.|+. +++++++.|++|++|++.++..+. ++.+|...|.|+.+.
T Consensus 313 r----rVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~efvR----------------tl~gHkRGIAClQYr 369 (499)
T KOG0281|consen 313 R----RVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFVR----------------TLNGHKRGIACLQYR 369 (499)
T ss_pred H----HHHhhhhhheeeecccc---ceEEEecCCceEEEEeccceeeeh----------------hhhcccccceehhcc
Confidence 1 36789999999999974 699999999999999999987643 367788899998875
Q ss_pred cCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCC
Q 010206 352 RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 352 ~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~ 430 (515)
++++++|+. .+|++||+.. +.++..+.+|+..+. ++.| |.+.+++|+.||+|++||+.+
T Consensus 370 --~rlvVSGSSDntIRlwdi~~-G~cLRvLeGHEeLvR---------------ciRF--d~krIVSGaYDGkikvWdl~a 429 (499)
T KOG0281|consen 370 --DRLVVSGSSDNTIRLWDIEC-GACLRVLEGHEELVR---------------CIRF--DNKRIVSGAYDGKIKVWDLQA 429 (499)
T ss_pred --CeEEEecCCCceEEEEeccc-cHHHHHHhchHHhhh---------------heee--cCceeeeccccceEEEEeccc
Confidence 889999864 9999999997 999999999998744 7888 567899999999999999987
Q ss_pred CCcc--------eeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 431 GSAE--------STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 431 ~~~~--------~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+... +.++..|...|-.+.| |...+++++.|.+|-+
T Consensus 430 aldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILi 473 (499)
T KOG0281|consen 430 ALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILI 473 (499)
T ss_pred ccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEE
Confidence 6433 2455678888888888 5668999999999998
No 53
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.5e-30 Score=234.53 Aligned_cols=277 Identities=20% Similarity=0.339 Sum_probs=220.8
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|++++|+| +++++++++.|+.|++|++.+++....
T Consensus 10 ~~i~~~~~~~--~~~~l~~~~~~g~i~i~~~~~~~~~~~----------------------------------------- 46 (289)
T cd00200 10 GGVTCVAFSP--DGKLLATGSGDGTIKVWDLETGELLRT----------------------------------------- 46 (289)
T ss_pred CCEEEEEEcC--CCCEEEEeecCcEEEEEEeeCCCcEEE-----------------------------------------
Confidence 8899999954 567999999999999999887541111
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
...|...+..+.|+|+++.|+++ .++.|++||+...+...
T Consensus 47 -------------------------------------~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~-- 87 (289)
T cd00200 47 -------------------------------------LKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVR-- 87 (289)
T ss_pred -------------------------------------EecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceE--
Confidence 23566778899999999999988 79999999998654332
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
.+..|...+.++.|+|++ .++++++.++.+++||+++++... . +..|...+.++.|+
T Consensus 88 ------~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~----~------------~~~~~~~i~~~~~~ 144 (289)
T cd00200 88 ------TLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLT----T------------LRGHTDWVNSVAFS 144 (289)
T ss_pred ------EEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEE----E------------eccCCCcEEEEEEc
Confidence 445678899999999997 788888889999999998654321 1 33456789999999
Q ss_pred cCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCC
Q 010206 352 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 352 ~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~ 430 (515)
|+++++++++ ++.|++||++. .+.+..+..|... +.+++|+|+++.+++++.|+.|++||+..
T Consensus 145 ~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~---------------i~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 208 (289)
T cd00200 145 PDGTFVASSSQDGTIKLWDLRT-GKCVATLTGHTGE---------------VNSVAFSPDGEKLLSSSSDGTIKLWDLST 208 (289)
T ss_pred CcCCEEEEEcCCCcEEEEEccc-cccceeEecCccc---------------cceEEECCCcCEEEEecCCCcEEEEECCC
Confidence 9999999988 69999999985 6777777765533 45899999999999999999999999987
Q ss_pred CCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCc-
Q 010206 431 GSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS- 509 (515)
Q Consensus 431 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~- 509 (515)
+ .....+..|..++..+.++|++.++++++.|+.+++++.... ........|...|.+++|+|++++|++++.++
T Consensus 209 ~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 284 (289)
T cd00200 209 G-KCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG---ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGT 284 (289)
T ss_pred C-ceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc---eeEEEccccCCcEEEEEECCCCCEEEEecCCCe
Confidence 6 455677788899999999999999999998999999433211 11112225678899999999999999888765
Q ss_pred EEEEe
Q 010206 510 LYMYY 514 (515)
Q Consensus 510 ~~i~~ 514 (515)
+.+|.
T Consensus 285 i~iw~ 289 (289)
T cd00200 285 IRIWD 289 (289)
T ss_pred EEecC
Confidence 77773
No 54
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=5.5e-32 Score=235.79 Aligned_cols=289 Identities=21% Similarity=0.351 Sum_probs=224.3
Q ss_pred eeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCC
Q 010206 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (515)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (515)
...+.+|. ..|+++.|.|. .+.+|++++.|+.|+||++....
T Consensus 207 ~~~~~gH~------------kgvsai~~fp~-~~hLlLS~gmD~~vklW~vy~~~------------------------- 248 (503)
T KOG0282|consen 207 SHNLSGHT------------KGVSAIQWFPK-KGHLLLSGGMDGLVKLWNVYDDR------------------------- 248 (503)
T ss_pred eeeccCCc------------cccchhhhccc-eeeEEEecCCCceEEEEEEecCc-------------------------
Confidence 35577777 88999999773 35789999999999999987621
Q ss_pred cCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe
Q 010206 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 252 (515)
Q Consensus 173 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 252 (515)
.+.++ ..+|..+|.+++|+++|..|+++
T Consensus 249 ---------------------------------------------------~~lrt-f~gH~k~Vrd~~~s~~g~~fLS~ 276 (503)
T KOG0282|consen 249 ---------------------------------------------------RCLRT-FKGHRKPVRDASFNNCGTSFLSA 276 (503)
T ss_pred ---------------------------------------------------ceehh-hhcchhhhhhhhccccCCeeeee
Confidence 12222 36899999999999999999998
Q ss_pred -CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccC
Q 010206 253 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 331 (515)
Q Consensus 253 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 331 (515)
-|+.|++||+++++....+ .....++|+.|+|++++.|++|+.|+.|+.||+|+++.+.+
T Consensus 277 sfD~~lKlwDtETG~~~~~f---------~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe---------- 337 (503)
T KOG0282|consen 277 SFDRFLKLWDTETGQVLSRF---------HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE---------- 337 (503)
T ss_pred ecceeeeeeccccceEEEEE---------ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHH----------
Confidence 7999999999999866432 13556899999999989999999999999999999987543
Q ss_pred CCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCC
Q 010206 332 PGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 410 (515)
Q Consensus 332 ~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 410 (515)
+..|-+.|..+.|-++|+.+++.+| +.++||+.+. ..+++....+... ..-++..+|+
T Consensus 338 ------Yd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~-~v~ik~i~~~~~h--------------smP~~~~~P~ 396 (503)
T KOG0282|consen 338 ------YDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRI-PVPIKNIADPEMH--------------TMPCLTLHPN 396 (503)
T ss_pred ------HHhhhhheeeeEEccCCceEeeeccCccEEEEEcCC-Cccchhhcchhhc--------------cCcceecCCC
Confidence 4556689999999999999999877 9999999986 4444333222110 0128999999
Q ss_pred CCEEEEecCCCcEEEEecCCCC--cceeeeccCCCc--eeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccc
Q 010206 411 GGRVATGSYSNLFRVFGCSEGS--AESTTLEASKNP--MRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDF 486 (515)
Q Consensus 411 ~~~l~s~s~dg~i~iw~~~~~~--~~~~~~~~~~~~--v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~ 486 (515)
+++++.=+.|+.|.+|.+...- .....+++|..+ -..+.|||||.+|++|+.||.+.+++.. ...+......|
T Consensus 397 ~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwk---t~kl~~~lkah 473 (503)
T KOG0282|consen 397 GKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWK---TTKLVSKLKAH 473 (503)
T ss_pred CCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeech---hhhhhhccccC
Confidence 9999999999999999876431 223567788644 4577899999999999999999993322 12344445568
Q ss_pred cCCeeEEEEcCCC-CEEEEEcCCc-EEEEe
Q 010206 487 SMKLLHLAWHPSE-NSIACAASNS-LYMYY 514 (515)
Q Consensus 487 ~~~i~~~~~s~~~-~~la~~~~~~-~~i~~ 514 (515)
.+.+..+.|+|.. ..+|+++-+| +.+|.
T Consensus 474 ~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 474 DQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CcceEEEEecCCCcceeEecccCceeEecC
Confidence 8999999999985 4667776555 77773
No 55
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=2.8e-31 Score=218.58 Aligned_cols=310 Identities=17% Similarity=0.236 Sum_probs=232.7
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
..|..++.+.+|||||.++|+|+.|-.|+|.|++..-....++.-..+. .-+.+ ..+.++..|.
T Consensus 109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~--~qa~h---PvIRTlYDH~----------- 172 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGD--TQARH---PVIRTLYDHV----------- 172 (430)
T ss_pred eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCC--cccCC---ceEeehhhcc-----------
Confidence 4699999999999999999999999999999987322111111111000 11112 2556677777
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
+.|+++.|+|. ...|++++.|++|++||+.....++..+.
T Consensus 173 -devn~l~FHPr--e~ILiS~srD~tvKlFDfsK~saKrA~K~------------------------------------- 212 (430)
T KOG0640|consen 173 -DEVNDLDFHPR--ETILISGSRDNTVKLFDFSKTSAKRAFKV------------------------------------- 212 (430)
T ss_pred -Ccccceeecch--hheEEeccCCCeEEEEecccHHHHHHHHH-------------------------------------
Confidence 88999999775 45999999999999999876432221110
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccc
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 270 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 270 (515)
.....+|.++.|+|.|.+|+.| +-.++++||+++-+....
T Consensus 213 ---------------------------------------~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs 253 (430)
T KOG0640|consen 213 ---------------------------------------FQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS 253 (430)
T ss_pred ---------------------------------------hhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee
Confidence 1223678999999999999999 889999999997665432
Q ss_pred eecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccc-cceeEEE
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII-ASISDIK 349 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~ 349 (515)
- ..-.+|.+.|+++.+++.+ ++.++++.||.|++||--.++++.. +.. .|. +.|.+..
T Consensus 254 a-----nPd~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv~t----~~~-----------AH~gsevcSa~ 312 (430)
T KOG0640|consen 254 A-----NPDDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRCVRT----IGN-----------AHGGSEVCSAV 312 (430)
T ss_pred c-----CcccccccceeEEEecCCc-cEEEEeccCCcEEeeccccHHHHHH----HHh-----------hcCCceeeeEE
Confidence 1 1335699999999999999 9999999999999999877765432 221 121 5799999
Q ss_pred EccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEec-CCCcEEEEe
Q 010206 350 FARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFG 427 (515)
Q Consensus 350 ~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s-~dg~i~iw~ 427 (515)
|..+|+++++.+ |..+++|.+.+ ++++.++.+......... .+...|+....|++.-. ..+.+.-||
T Consensus 313 Ftkn~kyiLsSG~DS~vkLWEi~t-~R~l~~YtGAg~tgrq~~----------rtqAvFNhtEdyVl~pDEas~slcsWd 381 (430)
T KOG0640|consen 313 FTKNGKYILSSGKDSTVKLWEIST-GRMLKEYTGAGTTGRQKH----------RTQAVFNHTEDYVLFPDEASNSLCSWD 381 (430)
T ss_pred EccCCeEEeecCCcceeeeeeecC-CceEEEEecCCcccchhh----------hhhhhhcCccceEEccccccCceeecc
Confidence 999999999854 69999999997 899999987643221100 12456777777776554 457899999
Q ss_pred cCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 428 CSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.++...+..---+|..+++.+..+|.++.+++|+.|...|+
T Consensus 382 aRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRF 422 (430)
T KOG0640|consen 382 ARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARF 422 (430)
T ss_pred ccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeee
Confidence 99874443444699999999999999999999999999998
No 56
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.1e-30 Score=243.47 Aligned_cols=270 Identities=19% Similarity=0.313 Sum_probs=198.2
Q ss_pred ccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCcccc-----------------------------Cccccc--
Q 010206 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRR-----------------------------DLEMMD-- 81 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~-----------------------------~~~~~~-- 81 (515)
.|.+.|.++.||+||+|||+|+.||.|+||.+...+....... ......
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 7999999999999999999999999999999877221100000 000000
Q ss_pred -ccccCCc------cceeeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeec
Q 010206 82 -YSMSRHP------EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDW 154 (515)
Q Consensus 82 -~~~~~~~------~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 154 (515)
.. ...| .-+...+|.||. +.|..|.|+ .+ .+|++++.|++|++|++...++...
T Consensus 345 s~~-~~~p~~~f~f~ekP~~ef~GHt------------~DILDlSWS--Kn-~fLLSSSMDKTVRLWh~~~~~CL~~--- 405 (712)
T KOG0283|consen 345 SPC-VLLPLKAFVFSEKPFCEFKGHT------------ADILDLSWS--KN-NFLLSSSMDKTVRLWHPGRKECLKV--- 405 (712)
T ss_pred Ccc-ccCCCccccccccchhhhhccc------------hhheecccc--cC-CeeEeccccccEEeecCCCcceeeE---
Confidence 01 0111 112334567777 889999994 44 5999999999999999886654332
Q ss_pred cCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCc
Q 010206 155 NVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHD 234 (515)
Q Consensus 155 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 234 (515)
-.|.
T Consensus 406 ----------------------------------------------------------------------------F~Hn 409 (712)
T KOG0283|consen 406 ----------------------------------------------------------------------------FSHN 409 (712)
T ss_pred ----------------------------------------------------------------------------EecC
Confidence 2578
Q ss_pred CCeEEEEecC-CCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEe
Q 010206 235 YHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 312 (515)
Q Consensus 235 ~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd 312 (515)
..|+|++|+| |.++|++| =|+.|+||++...+-. ....-..-|++++|.|+| +..+.|+.+|.+++|+
T Consensus 410 dfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv---------~W~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~ 479 (712)
T KOG0283|consen 410 DFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV---------DWNDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYD 479 (712)
T ss_pred CeeEEEEecccCCCcEeecccccceEEeecCcCeeE---------eehhhhhhheeEEeccCC-ceEEEEEeccEEEEEE
Confidence 9999999999 78899999 6999999999754422 122235789999999999 8999999999999999
Q ss_pred cCcccccccccceeeeccCCCccccccccccceeEEEEccCC--CEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccc
Q 010206 313 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG--RHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKL 390 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 390 (515)
.+..++... +........ -..|. .|+.+.|.|.. +.|++..|..|+|+|.+. ..++..|++......+
T Consensus 480 t~~lk~~~~----~~I~~~~~K---k~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~-~~lv~KfKG~~n~~SQ- 549 (712)
T KOG0283|consen 480 TEGLKLVSD----FHIRLHNKK---KKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD-KDLVHKFKGFRNTSSQ- 549 (712)
T ss_pred ccCCeEEEe----eeEeeccCc---cccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccc-hhhhhhhcccccCCcc-
Confidence 988765432 111111000 11122 79999999833 478888889999999985 7888888877654331
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecC
Q 010206 391 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 391 ~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~ 429 (515)
....|+.||++|+++++|..|++|++.
T Consensus 550 ------------~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 550 ------------ISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred ------------eeeeEccCCCEEEEeecCceEEEEeCC
Confidence 268899999999999999999999984
No 57
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=3e-30 Score=207.46 Aligned_cols=267 Identities=16% Similarity=0.275 Sum_probs=212.0
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|.+++| ..+|..|++++.|+++.+|++...+......
T Consensus 21 ~~v~Sv~w--n~~g~~lasgs~dktv~v~n~e~~r~~~~~~--------------------------------------- 59 (313)
T KOG1407|consen 21 QKVHSVAW--NCDGTKLASGSFDKTVSVWNLERDRFRKELV--------------------------------------- 59 (313)
T ss_pred hcceEEEE--cccCceeeecccCCceEEEEecchhhhhhhc---------------------------------------
Confidence 88999999 6778999999999999999988653111000
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC-CCEEEEe-CCCcEEEEeCCCCCcccc
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFN 270 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~ 270 (515)
..+|...|-.++|+|. ...|+++ .|.+|++||++..++...
T Consensus 60 -------------------------------------~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~ 102 (313)
T KOG1407|consen 60 -------------------------------------YRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTAR 102 (313)
T ss_pred -------------------------------------ccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEE
Confidence 2578888899999874 5667777 899999999998887654
Q ss_pred eecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEE
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 350 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (515)
+. .+..=.-+.|+|+| .+++.++.|..|.+.|.++.+...+.... ..+..+.|
T Consensus 103 i~---------~~~eni~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~~~~~~-----------------~e~ne~~w 155 (313)
T KOG1407|consen 103 IE---------TKGENINITWSPDG-EYIAVGNKDDRITFIDARTYKIVNEEQFK-----------------FEVNEISW 155 (313)
T ss_pred ee---------ccCcceEEEEcCCC-CEEEEecCcccEEEEEecccceeehhccc-----------------ceeeeeee
Confidence 32 12333467899999 89999999999999999987654332222 24677888
Q ss_pred ccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecC
Q 010206 351 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 351 s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~ 429 (515)
+.++.+++.-+. |.|.|..... -+++..+..|... ..++.|+|+|+++|+|+.|..+.+||+.
T Consensus 156 ~~~nd~Fflt~GlG~v~ILsyps-Lkpv~si~AH~sn---------------CicI~f~p~GryfA~GsADAlvSLWD~~ 219 (313)
T KOG1407|consen 156 NNSNDLFFLTNGLGCVEILSYPS-LKPVQSIKAHPSN---------------CICIEFDPDGRYFATGSADALVSLWDVD 219 (313)
T ss_pred cCCCCEEEEecCCceEEEEeccc-cccccccccCCcc---------------eEEEEECCCCceEeeccccceeeccChh
Confidence 877777776655 9999999985 8999999999854 2389999999999999999999999998
Q ss_pred CCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE---ecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEc
Q 010206 430 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR---VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 506 (515)
Q Consensus 430 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l---~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~ 506 (515)
.--++ ..+..+.-||+.+.|+.+|++||++|+|-.|-| ..|.+.+ + +.+.++...++|+|...+||.++
T Consensus 220 ELiC~-R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~--e-----I~~~~~t~tVAWHPk~~LLAyA~ 291 (313)
T KOG1407|consen 220 ELICE-RCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVW--E-----IPCEGPTFTVAWHPKRPLLAYAC 291 (313)
T ss_pred Hhhhh-eeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEE--E-----eeccCCceeEEecCCCceeeEEe
Confidence 65333 678889999999999999999999999999998 3333333 1 23578889999999999999776
Q ss_pred CC
Q 010206 507 SN 508 (515)
Q Consensus 507 ~~ 508 (515)
++
T Consensus 292 dd 293 (313)
T KOG1407|consen 292 DD 293 (313)
T ss_pred cC
Confidence 43
No 58
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.7e-30 Score=242.07 Aligned_cols=293 Identities=14% Similarity=0.163 Sum_probs=229.6
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
.+|-.++|+|+.+ .++++-..|.|++||.+.+.+...
T Consensus 10 sRvKglsFHP~rP--wILtslHsG~IQlWDYRM~tli~r----------------------------------------- 46 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRP--WILTSLHSGVIQLWDYRMGTLIDR----------------------------------------- 46 (1202)
T ss_pred ccccceecCCCCC--EEEEeecCceeeeehhhhhhHHhh-----------------------------------------
Confidence 6799999988766 999999999999999887642211
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
+..|.++|+.++|+|++.+|++| +|..|++|+..+.+..+
T Consensus 47 -------------------------------------FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclf-- 87 (1202)
T KOG0292|consen 47 -------------------------------------FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLF-- 87 (1202)
T ss_pred -------------------------------------hhccCCccceeeecCCCCeEEecCCccEEEEEecccceehh--
Confidence 36899999999999999999998 89999999999877765
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
++.+|-+.|+.+.|++.- ..|++++.|.+|+||+..+++++. +++||...|+|.+|+
T Consensus 88 ------tL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~~ia----------------vltGHnHYVMcAqFh 144 (1202)
T KOG0292|consen 88 ------TLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRKCIA----------------VLTGHNHYVMCAQFH 144 (1202)
T ss_pred ------hhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCceEE----------------EEecCceEEEeeccC
Confidence 678999999999999998 799999999999999999987642 378899999999999
Q ss_pred cCCCEEEEEc-CCeEEEEEeeCCCCC-----e---eeEeeeccc------cccccccccCCCccceeeEEEcCCCCEEEE
Q 010206 352 RNGRHILSRD-YMTLKLWDINMDSGP-----V---ATFQVHEHL------RPKLCDLYENDSIFDKFECCLSGDGGRVAT 416 (515)
Q Consensus 352 ~~~~~l~s~~-~~~i~iwd~~~~~~~-----~---~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 416 (515)
|...++++++ |.+|+|||+.- -+. - ..+.++... ...+.+.--.+.-.+|.-++|+|.-.+|++
T Consensus 145 ptEDlIVSaSLDQTVRVWDisG-LRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVS 223 (1202)
T KOG0292|consen 145 PTEDLIVSASLDQTVRVWDISG-LRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVS 223 (1202)
T ss_pred CccceEEEecccceEEEEeecc-hhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEe
Confidence 9999999998 59999999862 110 0 001111100 000011111122234668999999999999
Q ss_pred ecCCCcEEEEecCCCC-cceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEE
Q 010206 417 GSYSNLFRVFGCSEGS-AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAW 495 (515)
Q Consensus 417 ~s~dg~i~iw~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 495 (515)
|++|..|++|.++..+ ..+.+..+|.++|.++.|+|....++|.|+|+++|+++-.+. +-.....--..+-..++-
T Consensus 224 G~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR---t~v~tfrrendRFW~laa 300 (1202)
T KOG0292|consen 224 GADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR---TSVQTFRRENDRFWILAA 300 (1202)
T ss_pred cCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc---cceeeeeccCCeEEEEEe
Confidence 9999999999997543 445778899999999999999999999999999999332221 111111112567889999
Q ss_pred cCCCCEEEEEcCCcEEEEe
Q 010206 496 HPSENSIACAASNSLYMYY 514 (515)
Q Consensus 496 s~~~~~la~~~~~~~~i~~ 514 (515)
+|..+++|.|.++|+.+|-
T Consensus 301 hP~lNLfAAgHDsGm~VFk 319 (1202)
T KOG0292|consen 301 HPELNLFAAGHDSGMIVFK 319 (1202)
T ss_pred cCCcceeeeecCCceEEEE
Confidence 9999999999999999984
No 59
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.98 E-value=1.6e-29 Score=229.70 Aligned_cols=422 Identities=15% Similarity=0.189 Sum_probs=288.2
Q ss_pred cccccccceEEEEECCCCC---eEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceee----------eec
Q 010206 30 EEVQEVDIISAIEFDKSGD---HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK----------TEF 96 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~---~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 96 (515)
+..||.+.|.+++|+.-+. +||+++.|..||||.+.-+......+....... ..-.|.+... ..+
T Consensus 186 el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~--~~~~~~f~~l~~i~~~is~eall 263 (764)
T KOG1063|consen 186 ELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTT--LSNLPVFMILEEIQYRISFEALL 263 (764)
T ss_pred EeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccccccc--ccCCceeeeeeeEEEEEehhhhh
Confidence 4569999999999998544 899999999999999865543221111111000 1112222211 234
Q ss_pred ccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCC
Q 010206 97 QSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIP 176 (515)
Q Consensus 97 ~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 176 (515)
.||+ ..|+++.|. +++..|++++.|+++.+|...+..-............ ...+..+ .
T Consensus 264 ~GHe------------DWV~sv~W~--p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~g-g~a~GF~-------g 321 (764)
T KOG1063|consen 264 MGHE------------DWVYSVWWH--PEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVG-GSAGGFW-------G 321 (764)
T ss_pred cCcc------------cceEEEEEc--cchhhheecccCcceEEEecCCccceEEEEEEeeccc-cccccee-------e
Confidence 5787 999999995 4566899999999999999876633333222211100 1122233 6
Q ss_pred ceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCC
Q 010206 177 KSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL 255 (515)
Q Consensus 177 ~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~ 255 (515)
..|+|++..+ ++-+..|..++|. ..+ .. .-.....+.||...|.+++|+|.|++|++. .|.
T Consensus 322 ~lw~~n~~~i------------i~~g~~Gg~hlWk--t~d---~~-~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQ 383 (764)
T KOG1063|consen 322 GLWSPNSNVI------------IAHGRTGGFHLWK--TKD---KT-FWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQ 383 (764)
T ss_pred EEEcCCCCEE------------EEecccCcEEEEe--ccC---cc-ceeeccccccccccceeeeecCCCCEEEEecccc
Confidence 7889999877 8889999999886 111 11 112223358999999999999999999997 799
Q ss_pred cEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccc------cc---------
Q 010206 256 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL------CD--------- 320 (515)
Q Consensus 256 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~------~~--------- 320 (515)
+-|++-.-..+....-+ .+ -+-|...++|++|-+.. ..|++|.....+|+|+....-. +.
T Consensus 384 TTRlFa~wg~q~~wHEi-aR---PQiHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~ 458 (764)
T KOG1063|consen 384 TTRLFARWGRQQEWHEI-AR---PQIHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDEL 458 (764)
T ss_pred ceeeecccccccceeee-cc---cccccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhc
Confidence 99998765222221111 12 23477889999998854 7899999999999998653210 00
Q ss_pred -----------ccccee--------------eec---------cCC-----------CccccccccccceeEEEEccCCC
Q 010206 321 -----------THSKLF--------------EEQ---------EAP-----------GTRSFFTEIIASISDIKFARNGR 355 (515)
Q Consensus 321 -----------~~~~~~--------------~~~---------~~~-----------~~~~~~~~~~~~i~~~~~s~~~~ 355 (515)
.+--.+ +.. ..| .....+.||-..|.+++.+|+|+
T Consensus 459 p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn 538 (764)
T KOG1063|consen 459 PDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN 538 (764)
T ss_pred ccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC
Confidence 000000 000 000 00123567889999999999999
Q ss_pred EEEEEc-----C-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecC
Q 010206 356 HILSRD-----Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 356 ~l~s~~-----~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~ 429 (515)
++|++. . ..|++|+..+ -...+.+.+|.-. |+.++|||||++|++.+.|.++.+|...
T Consensus 539 liASaCKS~~~ehAvI~lw~t~~-W~~~~~L~~HsLT---------------VT~l~FSpdg~~LLsvsRDRt~sl~~~~ 602 (764)
T KOG1063|consen 539 LIASACKSSLKEHAVIRLWNTAN-WLQVQELEGHSLT---------------VTRLAFSPDGRYLLSVSRDRTVSLYEVQ 602 (764)
T ss_pred EEeehhhhCCccceEEEEEeccc-hhhhheecccceE---------------EEEEEECCCCcEEEEeecCceEEeeeee
Confidence 999853 2 6799999986 6777788888865 6799999999999999999999999986
Q ss_pred CCCcce---eeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccC-CccccccCCeeEEEEcCC-C----C
Q 010206 430 EGSAES---TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDAN-GNAFDFSMKLLHLAWHPS-E----N 500 (515)
Q Consensus 430 ~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~-~~~~~~~~~i~~~~~s~~-~----~ 500 (515)
...... ..++.|..-|....|+|++++++++|.|++|+++.-.+.....+. ...+.+...|++++|.|- . .
T Consensus 603 ~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~ 682 (764)
T KOG1063|consen 603 EDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGD 682 (764)
T ss_pred cccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccc
Confidence 543222 347899999999999999999999999999999332222111111 134567899999999874 2 2
Q ss_pred EEEEEcCCc-EEEEe
Q 010206 501 SIACAASNS-LYMYY 514 (515)
Q Consensus 501 ~la~~~~~~-~~i~~ 514 (515)
.+++|-..| +++|.
T Consensus 683 ~vavGle~GeI~l~~ 697 (764)
T KOG1063|consen 683 VVAVGLEKGEIVLWR 697 (764)
T ss_pred eEEEEecccEEEEEe
Confidence 677888766 77774
No 60
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=1.2e-29 Score=204.03 Aligned_cols=278 Identities=15% Similarity=0.245 Sum_probs=221.7
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
+..+|...|.+|+|+.+|..||+|+.|+++.||++...+.. ......+|.
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~---------------------~~~~~~gh~--------- 64 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR---------------------KELVYRGHT--------- 64 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh---------------------hhhcccCCC---------
Confidence 34589999999999999999999999999999999766432 223466777
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
+.|-.++|.|..+ ..|++++.|++|++||++.++........
T Consensus 65 ---~svdql~w~~~~~-d~~atas~dk~ir~wd~r~~k~~~~i~~~---------------------------------- 106 (313)
T KOG1407|consen 65 ---DSVDQLCWDPKHP-DLFATASGDKTIRIWDIRSGKCTARIETK---------------------------------- 106 (313)
T ss_pred ---cchhhheeCCCCC-cceEEecCCceEEEEEeccCcEEEEeecc----------------------------------
Confidence 7899999987554 58999999999999999998755443221
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
..=.-+.|+|+|++++++ .|..|...|.++.+..
T Consensus 107 ---------------------------------------------~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~ 141 (313)
T KOG1407|consen 107 ---------------------------------------------GENINITWSPDGEYIAVGNKDDRITFIDARTYKIV 141 (313)
T ss_pred ---------------------------------------------CcceEEEEcCCCCEEEEecCcccEEEEEeccccee
Confidence 111247899999999998 7999999999866543
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
. -+.....+..+.|+.++ .+|+.....|.|.|......+.+ ..+..|.....|+
T Consensus 142 ~---------~~~~~~e~ne~~w~~~n-d~Fflt~GlG~v~ILsypsLkpv----------------~si~AH~snCicI 195 (313)
T KOG1407|consen 142 N---------EEQFKFEVNEISWNNSN-DLFFLTNGLGCVEILSYPSLKPV----------------QSIKAHPSNCICI 195 (313)
T ss_pred e---------hhcccceeeeeeecCCC-CEEEEecCCceEEEEeccccccc----------------cccccCCcceEEE
Confidence 2 22345667889999776 78887778899999887655432 2367788999999
Q ss_pred EEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 349 KFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 349 ~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
.|+|+|+++|+|+. -.+.+||+.. .-+++.+..++-. |..+.||.||++||+||+|..|-|=+
T Consensus 196 ~f~p~GryfA~GsADAlvSLWD~~E-LiC~R~isRldwp---------------VRTlSFS~dg~~lASaSEDh~IDIA~ 259 (313)
T KOG1407|consen 196 EFDPDGRYFATGSADALVSLWDVDE-LICERCISRLDWP---------------VRTLSFSHDGRMLASASEDHFIDIAE 259 (313)
T ss_pred EECCCCceEeeccccceeeccChhH-hhhheeeccccCc---------------eEEEEeccCcceeeccCccceEEeEe
Confidence 99999999999875 8999999984 7778888777655 45899999999999999999999999
Q ss_pred cCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCC
Q 010206 428 CSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSG 464 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 464 (515)
+++|..+ ..+ .+..+...++|+|...+||.+..|.
T Consensus 260 vetGd~~-~eI-~~~~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 260 VETGDRV-WEI-PCEGPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred cccCCeE-EEe-eccCCceeEEecCCCceeeEEecCC
Confidence 9998433 222 4577888999999999999887764
No 61
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-28 Score=204.32 Aligned_cols=278 Identities=19% Similarity=0.246 Sum_probs=214.2
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccc
Q 010206 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (515)
-...|+++.|+++|.+|++++.|..++|||..+++.. .++..++ -
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~-----------------------~ti~skk------------y 57 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQV-----------------------KTINSKK------------Y 57 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCcee-----------------------eEeeccc------------c
Confidence 4678999999999999999999999999999887743 4455554 5
Q ss_pred eeEEEEEeecCCCcEEEeeeC--CCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 114 KINKIRWCQSANSALYLLSTN--DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 114 ~v~~l~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
.|..++|... ...++.++. |.+|+..++.+.+..+.
T Consensus 58 G~~~~~Fth~--~~~~i~sStk~d~tIryLsl~dNkylRY---------------------------------------- 95 (311)
T KOG1446|consen 58 GVDLACFTHH--SNTVIHSSTKEDDTIRYLSLHDNKYLRY---------------------------------------- 95 (311)
T ss_pred cccEEEEecC--CceEEEccCCCCCceEEEEeecCceEEE----------------------------------------
Confidence 6888888543 335555554 88999988887653222
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccc
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 270 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 270 (515)
..||...|++++.+|-+..++++ -|++|++||++..+....
T Consensus 96 --------------------------------------F~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~ 137 (311)
T KOG1446|consen 96 --------------------------------------FPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL 137 (311)
T ss_pred --------------------------------------cCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE
Confidence 47999999999999999999998 799999999997665432
Q ss_pred eecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEE
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 350 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (515)
+ +...-..++|.|+| -++|++.....|++||+|.-..- ...++... .+-....+.+.|
T Consensus 138 l----------~~~~~pi~AfDp~G-LifA~~~~~~~IkLyD~Rs~dkg--PF~tf~i~---------~~~~~ew~~l~F 195 (311)
T KOG1446|consen 138 L----------NLSGRPIAAFDPEG-LIFALANGSELIKLYDLRSFDKG--PFTTFSIT---------DNDEAEWTDLEF 195 (311)
T ss_pred E----------ecCCCcceeECCCC-cEEEEecCCCeEEEEEecccCCC--CceeEccC---------CCCccceeeeEE
Confidence 2 22333567899999 88888888889999999875321 11222211 012256899999
Q ss_pred ccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecC
Q 010206 351 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 351 s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~ 429 (515)
||||++|+.++. +.+++.|.-. +..+.++..+..... +. .+.+|+||++++++|+.||+|.+|+++
T Consensus 196 S~dGK~iLlsT~~s~~~~lDAf~-G~~~~tfs~~~~~~~----------~~--~~a~ftPds~Fvl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 196 SPDGKSILLSTNASFIYLLDAFD-GTVKSTFSGYPNAGN----------LP--LSATFTPDSKFVLSGSDDGTIHVWNLE 262 (311)
T ss_pred cCCCCEEEEEeCCCcEEEEEccC-CcEeeeEeeccCCCC----------cc--eeEEECCCCcEEEEecCCCcEEEEEcC
Confidence 999999998877 8999999986 788888887765421 00 278999999999999999999999999
Q ss_pred CCCcceeeecc-CCCceeeEEECCCCCeeEeecC
Q 010206 430 EGSAESTTLEA-SKNPMRRQVQTPSRPSRPLGSL 462 (515)
Q Consensus 430 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~ 462 (515)
++ .....+.+ +..++..+.|.|.-..+++++.
T Consensus 263 tg-~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s 295 (311)
T KOG1446|consen 263 TG-KKVAVLRGPNGGPVSCVRFNPRYAMFVSASS 295 (311)
T ss_pred CC-cEeeEecCCCCCCccccccCCceeeeeecCc
Confidence 98 45567776 7899999999998777777654
No 62
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=5.1e-31 Score=221.50 Aligned_cols=293 Identities=20% Similarity=0.262 Sum_probs=224.9
Q ss_pred hhhhhcccccccccccccceEEEEECCCC-CeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecc
Q 010206 19 FSQVFGERTAGEEVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ 97 (515)
Q Consensus 19 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~g-~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (515)
+-.+|........-+|.+.|.|++=+|.. ..+|+|+.||.|+|||+..... ...+.
T Consensus 50 leR~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~-----------------------~~~f~ 106 (433)
T KOG0268|consen 50 LERVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC-----------------------IRTFK 106 (433)
T ss_pred HHHHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhh-----------------------hheee
Confidence 34556666666678999999999999976 7899999999999999987653 36788
Q ss_pred cCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCc
Q 010206 98 SHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK 177 (515)
Q Consensus 98 ~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 177 (515)
+|+ +.|..|++. . ..+++++.|++|+.|.+.... .....
T Consensus 107 AH~------------G~V~Gi~v~--~--~~~~tvgdDKtvK~wk~~~~p-~~til------------------------ 145 (433)
T KOG0268|consen 107 AHE------------GLVRGICVT--Q--TSFFTVGDDKTVKQWKIDGPP-LHTIL------------------------ 145 (433)
T ss_pred ccc------------CceeeEEec--c--cceEEecCCcceeeeeccCCc-ceeee------------------------
Confidence 998 899999994 3 479999999999999987631 11000
Q ss_pred eeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcE
Q 010206 178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRI 257 (515)
Q Consensus 178 ~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i 257 (515)
-...+..+.-+..+..++++. ..|
T Consensus 146 -------------------------------------------------------g~s~~~gIdh~~~~~~FaTcG-e~i 169 (433)
T KOG0268|consen 146 -------------------------------------------------------GKSVYLGIDHHRKNSVFATCG-EQI 169 (433)
T ss_pred -------------------------------------------------------ccccccccccccccccccccC-cee
Confidence 002223333334455566652 358
Q ss_pred EEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccc
Q 010206 258 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSF 337 (515)
Q Consensus 258 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (515)
.|||.+...+.. ++......|.++.|+|....+|+++..|+.|.+||+++...+.+.+..
T Consensus 170 ~IWD~~R~~Pv~--------smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~------------ 229 (433)
T KOG0268|consen 170 DIWDEQRDNPVS--------SMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT------------ 229 (433)
T ss_pred eecccccCCccc--------eeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee------------
Confidence 899997655442 556667889999999998789999999999999999998765442222
Q ss_pred ccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEE
Q 010206 338 FTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT 416 (515)
Q Consensus 338 ~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 416 (515)
..-+.++|+|.+-.+++|++ ..++.||++.-..++....+|... |+++.|||.|+-+++
T Consensus 230 -----mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsA---------------V~dVdfsptG~Efvs 289 (433)
T KOG0268|consen 230 -----MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSA---------------VMDVDFSPTGQEFVS 289 (433)
T ss_pred -----ccccceecCccccceeeccccccceehhhhhhcccchhhccccee---------------EEEeccCCCcchhcc
Confidence 23467899997777777875 999999999877788888888765 679999999999999
Q ss_pred ecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecC
Q 010206 417 GSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKG 471 (515)
Q Consensus 417 ~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~ 471 (515)
||.|.+|+||..+.+.....-.......|.++.|+.|.++++|||.|+.||++++
T Consensus 290 gsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 290 GSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred ccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 9999999999998764332222233456889999999999999999999999443
No 63
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=3e-29 Score=211.21 Aligned_cols=335 Identities=11% Similarity=0.096 Sum_probs=249.8
Q ss_pred eecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCc
Q 010206 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS 173 (515)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (515)
..|..|. ..|.+++.+| +.+++++|+.|..-.+|++.++........+ ...|.
T Consensus 58 ~tF~~H~------------~svFavsl~P--~~~l~aTGGgDD~AflW~~~~ge~~~eltgH--------KDSVt----- 110 (399)
T KOG0296|consen 58 VTFDKHT------------DSVFAVSLHP--NNNLVATGGGDDLAFLWDISTGEFAGELTGH--------KDSVT----- 110 (399)
T ss_pred eehhhcC------------CceEEEEeCC--CCceEEecCCCceEEEEEccCCcceeEecCC--------CCceE-----
Confidence 4677888 8899999977 5569999999999999999999865555544 23344
Q ss_pred CCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-
Q 010206 174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA- 252 (515)
Q Consensus 174 ~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~- 252 (515)
.+.|+.||.+| ++|+-+|.+++|.+ .. +..+.. +......+.-+.|+|.+..|++|
T Consensus 111 --~~~FshdgtlL------------ATGdmsG~v~v~~~--st------g~~~~~-~~~e~~dieWl~WHp~a~illAG~ 167 (399)
T KOG0296|consen 111 --CCSFSHDGTLL------------ATGDMSGKVLVFKV--ST------GGEQWK-LDQEVEDIEWLKWHPRAHILLAGS 167 (399)
T ss_pred --EEEEccCceEE------------EecCCCccEEEEEc--cc------CceEEE-eecccCceEEEEecccccEEEeec
Confidence 88999999999 99999999999992 22 122222 23445678889999999999999
Q ss_pred CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCC
Q 010206 253 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 332 (515)
Q Consensus 253 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 332 (515)
.||.+-.|.+.+.... ..+.+|+.++++=.|.|+| +.++++..||+|++||+.++....+ ....+
T Consensus 168 ~DGsvWmw~ip~~~~~--------kv~~Gh~~~ct~G~f~pdG-Kr~~tgy~dgti~~Wn~ktg~p~~~----~~~~e-- 232 (399)
T KOG0296|consen 168 TDGSVWMWQIPSQALC--------KVMSGHNSPCTCGEFIPDG-KRILTGYDDGTIIVWNPKTGQPLHK----ITQAE-- 232 (399)
T ss_pred CCCcEEEEECCCccee--------eEecCCCCCcccccccCCC-ceEEEEecCceEEEEecCCCceeEE----ecccc--
Confidence 8999999999865333 2678899999999999999 9999999999999999999865422 11110
Q ss_pred CccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCC
Q 010206 333 GTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 411 (515)
Q Consensus 333 ~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 411 (515)
.....++.++..+..++.|+. +.+++-+..+ ++.+....+.. +.+ ..........|-++.++..=
T Consensus 233 ---------~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~s-gKVv~~~n~~~---~~l-~~~~e~~~esve~~~~ss~l 298 (399)
T KOG0296|consen 233 ---------GLELPCISLNLAGSTLTKGNSEGVACGVNNGS-GKVVNCNNGTV---PEL-KPSQEELDESVESIPSSSKL 298 (399)
T ss_pred ---------cCcCCccccccccceeEeccCCccEEEEcccc-ceEEEecCCCC---ccc-cccchhhhhhhhhccccccc
Confidence 134667788888888888865 7777777665 55554444210 000 00111112223356667677
Q ss_pred CEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCee
Q 010206 412 GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLL 491 (515)
Q Consensus 412 ~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~ 491 (515)
.+.|+|+-||+|.|||+... .....-.|..+|..+.|.+ ..+|++++.+|.|+.++ .....+.....+|+..|.
T Consensus 299 pL~A~G~vdG~i~iyD~a~~--~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wD---aRtG~l~~~y~GH~~~Il 372 (399)
T KOG0296|consen 299 PLAACGSVDGTIAIYDLAAS--TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWD---ARTGQLKFTYTGHQMGIL 372 (399)
T ss_pred chhhcccccceEEEEecccc--hhheeccCCCceEEEEEcC-cchheeeccCceEEeee---ccccceEEEEecCchhee
Confidence 78899999999999999864 3345567888999999999 78999999999999922 222234445668999999
Q ss_pred EEEEcCCCCEEEEEcCCc-EEEE
Q 010206 492 HLAWHPSENSIACAASNS-LYMY 513 (515)
Q Consensus 492 ~~~~s~~~~~la~~~~~~-~~i~ 513 (515)
+++.+|+.++++++++++ ..||
T Consensus 373 ~f~ls~~~~~vvT~s~D~~a~VF 395 (399)
T KOG0296|consen 373 DFALSPQKRLVVTVSDDNTALVF 395 (399)
T ss_pred EEEEcCCCcEEEEecCCCeEEEE
Confidence 999999999999888665 5555
No 64
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=9e-31 Score=218.87 Aligned_cols=235 Identities=16% Similarity=0.231 Sum_probs=186.0
Q ss_pred eccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010206 230 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 308 (515)
Q Consensus 230 ~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i 308 (515)
+.+|.+.|.|+.|. .+.+++| +|.+|++||+++++... ++-+|.+.|..+.|+. .++++++.|.+|
T Consensus 233 L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~--------tlihHceaVLhlrf~n---g~mvtcSkDrsi 299 (499)
T KOG0281|consen 233 LTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN--------TLIHHCEAVLHLRFSN---GYMVTCSKDRSI 299 (499)
T ss_pred hhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh--------HHhhhcceeEEEEEeC---CEEEEecCCcee
Confidence 47999999999884 5588998 89999999999988664 5677999999999985 489999999999
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeecccc
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLR 387 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~ 387 (515)
.+||+...... ....++.||...|+.+.|+ .+++++++ |.+|++|++.+ ...+.++.+|....
T Consensus 300 aVWdm~sps~i-------------t~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st-~efvRtl~gHkRGI 363 (499)
T KOG0281|consen 300 AVWDMASPTDI-------------TLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTST-CEFVRTLNGHKRGI 363 (499)
T ss_pred EEEeccCchHH-------------HHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccc-eeeehhhhcccccc
Confidence 99999765421 1134578899999999997 55999976 49999999997 99999999987542
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEE
Q 010206 388 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVR 467 (515)
Q Consensus 388 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~ 467 (515)
.|..-.++++++||.|.+|++||++.|.+ +..|++|.+-|+++.| +.+.+++|..||+|+
T Consensus 364 -----------------AClQYr~rlvVSGSSDntIRlwdi~~G~c-LRvLeGHEeLvRciRF--d~krIVSGaYDGkik 423 (499)
T KOG0281|consen 364 -----------------ACLQYRDRLVVSGSSDNTIRLWDIECGAC-LRVLEGHEELVRCIRF--DNKRIVSGAYDGKIK 423 (499)
T ss_pred -----------------eehhccCeEEEecCCCceEEEEeccccHH-HHHHhchHHhhhheee--cCceeeeccccceEE
Confidence 23334789999999999999999999854 4899999999999999 566899999999999
Q ss_pred EecCCCCCcc-----cc-CCccccccCCeeEEEEcCCCCEEEEEcCCcEEEEe
Q 010206 468 RVKGADNSAL-----DA-NGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 514 (515)
Q Consensus 468 l~~~~~~~~~-----~~-~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~i~~ 514 (515)
+++-..-.+. ++ ...+..|.+.|..+.|.. -+.+++..++.+.||+
T Consensus 424 vWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~-fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 424 VWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE-FQIISSSHDDTILIWD 475 (499)
T ss_pred EEecccccCCcccccchHHHhhhhccceeEEEeecc-eEEEeccCCCeEEEEE
Confidence 9222111100 01 112346888999999953 4555666788999996
No 65
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.1e-30 Score=205.83 Aligned_cols=280 Identities=17% Similarity=0.251 Sum_probs=216.4
Q ss_pred EEEEECC-CCCeEEeec-------CCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 39 SAIEFDK-SGDHLATGD-------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 39 ~~v~~s~-~g~~lasg~-------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
.++.||| -.++||.+. .+|++.|-++...+-+ .++ .+++
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi-----------------------~e~----------~s~d 58 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGI-----------------------QEC----------QSYD 58 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCe-----------------------EEE----------Eeee
Confidence 4789999 233444432 3678888887643321 111 2233
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
.+..+..++|+++.+ ..+++++.||++++||+.....
T Consensus 59 ~~D~LfdV~Wse~~e-~~~~~a~GDGSLrl~d~~~~s~------------------------------------------ 95 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHE-NQVIAASGDGSLRLFDLTMPSK------------------------------------------ 95 (311)
T ss_pred cccceeEeeecCCCc-ceEEEEecCceEEEeccCCCCc------------------------------------------
Confidence 347899999987655 5888999999999999433210
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC-CCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
.|. . .+.|..+|.++.|++. ++.++++ .|++|++|+...++..
T Consensus 96 ---------------Pi~-------------------~-~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv 140 (311)
T KOG0277|consen 96 ---------------PIH-------------------K-FKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSV 140 (311)
T ss_pred ---------------chh-------------------H-HHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcce
Confidence 011 1 3689999999999984 5556666 7999999999866644
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
. ++.+|...|+..+|+|..++++++++.|+++++||++.... ...+..|...|.++
T Consensus 141 ~--------Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk----------------~~~i~ah~~Eil~c 196 (311)
T KOG0277|consen 141 Q--------TFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK----------------FMSIEAHNSEILCC 196 (311)
T ss_pred E--------eecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc----------------eeEEEeccceeEee
Confidence 3 67899999999999999889999999999999999976422 11255677889999
Q ss_pred EEcc-CCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCC-CEEEEecCCCcEEE
Q 010206 349 KFAR-NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRV 425 (515)
Q Consensus 349 ~~s~-~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~s~dg~i~i 425 (515)
.|+. +...|++|+ |+.|+.||+++-..++..+.+|.-. |..+.|||.. ..||+++.|-+++|
T Consensus 197 dw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A---------------VRkvk~Sph~~~lLaSasYDmT~ri 261 (311)
T KOG0277|consen 197 DWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA---------------VRKVKFSPHHASLLASASYDMTVRI 261 (311)
T ss_pred cccccCCcEEEecCCCceEEEEehhhccccceeecCCceE---------------EEEEecCcchhhHhhhccccceEEe
Confidence 9998 666777775 5999999999877888888888766 4589999964 57899999999999
Q ss_pred EecCCCCcceeeeccCCCceeeEEECC-CCCeeEeecCCCeEEE
Q 010206 426 FGCSEGSAESTTLEASKNPMRRQVQTP-SRPSRPLGSLSGVVRR 468 (515)
Q Consensus 426 w~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~l 468 (515)
||...+...+.+...|.+-+..+.+++ +..++|+.++|..+.+
T Consensus 262 w~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~V 305 (311)
T KOG0277|consen 262 WDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYV 305 (311)
T ss_pred cccccchhhhhhhhccceEEeccccccccCceeeecccccceee
Confidence 999876566678889999999999987 4568999999999998
No 66
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=8e-29 Score=229.84 Aligned_cols=380 Identities=11% Similarity=0.150 Sum_probs=281.2
Q ss_pred eEEEEECCC--CCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccccee
Q 010206 38 ISAIEFDKS--GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (515)
Q Consensus 38 v~~v~~s~~--g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (515)
|+++. +|. =+.++.|+.+|.+.||++.+++. +.+++++. ..|
T Consensus 162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~-----------------------v~~f~~~~------------s~I 205 (910)
T KOG1539|consen 162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKV-----------------------VYTFQEFF------------SRI 205 (910)
T ss_pred eeeEe-cchhheeeEEEeecCCcEEEEEeccCcE-----------------------EEEecccc------------cce
Confidence 77664 563 35688999999999999998874 46788887 889
Q ss_pred EEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCC
Q 010206 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (515)
Q Consensus 116 ~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 195 (515)
+++.=+|--| .++.|..+|+|.+++++.++....++.. .|.|. +++|..||..+
T Consensus 206 T~ieqsPaLD--VVaiG~~~G~ViifNlK~dkil~sFk~d--------~g~Vt-------slSFrtDG~p~--------- 259 (910)
T KOG1539|consen 206 TAIEQSPALD--VVAIGLENGTVIIFNLKFDKILMSFKQD--------WGRVT-------SLSFRTDGNPL--------- 259 (910)
T ss_pred eEeccCCcce--EEEEeccCceEEEEEcccCcEEEEEEcc--------cccee-------EEEeccCCCee---------
Confidence 9999877666 8999999999999999999887776654 35555 89999999876
Q ss_pred CCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecc
Q 010206 196 DSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 274 (515)
Q Consensus 196 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~ 274 (515)
+++++..|.+-+|| +.... ........|.+.|....|.|....++++ .|..+++|-.+++.-..+++
T Consensus 260 --las~~~~G~m~~wD--Le~kk------l~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~L-- 327 (910)
T KOG1539|consen 260 --LASGRSNGDMAFWD--LEKKK------LINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLL-- 327 (910)
T ss_pred --EEeccCCceEEEEE--cCCCe------eeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchhe--
Confidence 36777789999999 33322 1222235788999999999999999997 79999999776555433332
Q ss_pred cCccccccCCceEEEEEe-cCCCcEEEEEecCCeEEEEecCccccccc--------------------------------
Q 010206 275 KPANMEDLTEVITSAEFH-PTHCNMLAYSSSKGSIRLIDMRQSALCDT-------------------------------- 321 (515)
Q Consensus 275 ~~~~~~~~~~~i~~i~~~-p~~~~~l~~~~~dg~i~~wd~~~~~~~~~-------------------------------- 321 (515)
+.-.+|..+..+++|. .++ ..+.+++.|++.+.+++.......+
T Consensus 328 --R~R~GHs~Pp~~irfy~~~g-~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~ 404 (910)
T KOG1539|consen 328 --RSRGGHSAPPSCIRFYGSQG-HFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFE 404 (910)
T ss_pred --eeccCCCCCchheeeeccCc-EEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecc
Confidence 2447899999999998 455 8999999999999888653211100
Q ss_pred ------------------ccceeeeccCCCcc-----ccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCe
Q 010206 322 ------------------HSKLFEEQEAPGTR-----SFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPV 377 (515)
Q Consensus 322 ------------------~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~ 377 (515)
..++|+-.+...-. ..+......+++++.+++|++.+.|.. |.|.+|++.+ +...
T Consensus 405 ~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS-Gi~r 483 (910)
T KOG1539|consen 405 NAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS-GIHR 483 (910)
T ss_pred cchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEccc-Ceee
Confidence 00111111100000 001112357899999999999999976 9999999996 6666
Q ss_pred eeEe---eeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCc---------------------
Q 010206 378 ATFQ---VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA--------------------- 433 (515)
Q Consensus 378 ~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~--------------------- 433 (515)
..+. .|... |+.++...-++.+++++.+|.+++||.+....
T Consensus 484 ~sf~~~~ah~~~---------------V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l 548 (910)
T KOG1539|consen 484 KSFGDSPAHKGE---------------VTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDL 548 (910)
T ss_pred cccccCccccCc---------------eeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhh
Confidence 6663 44443 56899988899999999999999999986520
Q ss_pred -------------------ceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEE
Q 010206 434 -------------------ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLA 494 (515)
Q Consensus 434 -------------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 494 (515)
....+.+|.+.++.+.|||||+||++++.|++||+ |.+....+ ...+....+.+++.
T Consensus 549 ~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~---wDlpt~~l-ID~~~vd~~~~sls 624 (910)
T KOG1539|consen 549 LAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRT---WDLPTGTL-IDGLLVDSPCTSLS 624 (910)
T ss_pred hhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEE---EeccCcce-eeeEecCCcceeeE
Confidence 11233489999999999999999999999999999 33321111 12223467889999
Q ss_pred EcCCCCEEEEEc--CCcEEEEe
Q 010206 495 WHPSENSIACAA--SNSLYMYY 514 (515)
Q Consensus 495 ~s~~~~~la~~~--~~~~~i~~ 514 (515)
|||.|.+||++. .+|+++|.
T Consensus 625 ~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 625 FSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred ECCCCCEEEEEEecCceEEEEE
Confidence 999999999886 46899996
No 67
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.97 E-value=2.4e-28 Score=214.09 Aligned_cols=384 Identities=14% Similarity=0.163 Sum_probs=269.1
Q ss_pred ccccccccccccceEEEEECCCCCeEEeecCCC--------eEEEEEcccCcccCccccCcccccccccCCccceeeeec
Q 010206 25 ERTAGEEVQEVDIISAIEFDKSGDHLATGDRGG--------RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF 96 (515)
Q Consensus 25 ~~~~~~~~~h~~~v~~v~~s~~g~~lasg~~dg--------~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (515)
++.+-.+.+|.+.|.|++.+||.-.+|+|-..| .|+|||..+-.. +..+
T Consensus 94 e~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~T-----------------------L~V~ 150 (626)
T KOG2106|consen 94 ERSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLST-----------------------LHVI 150 (626)
T ss_pred hhhcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeeccccccee-----------------------eeee
Confidence 445557789999999999999998888875544 499999654331 1223
Q ss_pred ccCCCcccccccccccceeEEEEEeecCCCcEEEee--eCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcC
Q 010206 97 QSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLS--TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (515)
Q Consensus 97 ~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 174 (515)
...+ ..|.+++|++...|.+|+.. +.+..+.+||.+.+......+.. ...++
T Consensus 151 g~f~------------~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~s--------ne~v~------ 204 (626)
T KOG2106|consen 151 GFFD------------RGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTS--------NEVVF------ 204 (626)
T ss_pred cccc------------ccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceec--------cceEE------
Confidence 3333 67999999988777777775 66788999999876532221111 12233
Q ss_pred CCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-C
Q 010206 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D 253 (515)
Q Consensus 175 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~ 253 (515)
...|.|.+..+ +.....+.+.+|+ . ++....+..-.+.+.....|.|++|.++|+. ++| +
T Consensus 205 -~a~FHPtd~nl------------iit~Gk~H~~Fw~--~---~~~~l~k~~~~fek~ekk~Vl~v~F~engdv-iTgDS 265 (626)
T KOG2106|consen 205 -LATFHPTDPNL------------IITCGKGHLYFWT--L---RGGSLVKRQGIFEKREKKFVLCVTFLENGDV-ITGDS 265 (626)
T ss_pred -EEEeccCCCcE------------EEEeCCceEEEEE--c---cCCceEEEeeccccccceEEEEEEEcCCCCE-EeecC
Confidence 67888988888 7888889999998 2 2222223333333334477999999999975 567 8
Q ss_pred CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccc-------c---
Q 010206 254 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH-------S--- 323 (515)
Q Consensus 254 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-------~--- 323 (515)
+|.|.||+..+.+... ....|.+.|.+++...+| .|++|+.|+.|..||-.-.+..... +
T Consensus 266 ~G~i~Iw~~~~~~~~k--------~~~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv 335 (626)
T KOG2106|consen 266 GGNILIWSKGTNRISK--------QVHAHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTV 335 (626)
T ss_pred CceEEEEeCCCceEEe--------EeeecCCceEEEEEecCc--cEeecCccceEEeccccccccccccCchhcCCeeEE
Confidence 9999999987554332 223799999999999998 5666999999999993222211000 0
Q ss_pred --------------ceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccc
Q 010206 324 --------------KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRP 388 (515)
Q Consensus 324 --------------~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~ 388 (515)
..+++.-......+..+|......++.+|+...+++++ |+.+++|+ . .++.-+......
T Consensus 336 ~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~--~k~~wt~~~~d~--- 409 (626)
T KOG2106|consen 336 AEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D--HKLEWTKIIEDP--- 409 (626)
T ss_pred ecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-C--CceeEEEEecCc---
Confidence 01111111112233466888899999999888888865 59999999 3 454444332222
Q ss_pred cccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 389 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 389 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+.++.|+|.| .||.|+..|...+.|.++. .+ .++....++++.+.++|+|.+||.|+.|+.|.+
T Consensus 410 -------------~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~-~l-v~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyi 473 (626)
T KOG2106|consen 410 -------------AECADFHPSG-VVAVGTATGRWFVLDTETQ-DL-VTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYI 473 (626)
T ss_pred -------------eeEeeccCcc-eEEEeeccceEEEEecccc-ee-EEEEecCCceEEEEEcCCCCEEEEecCCCeEEE
Confidence 2389999999 9999999999999999874 33 344444899999999999999999999999999
Q ss_pred ----ecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcEEEE
Q 010206 469 ----VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 513 (515)
Q Consensus 469 ----~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~i~ 513 (515)
..+.++. ..... +.+.|+++.||+|+++|.+-+.+--++|
T Consensus 474 y~Vs~~g~~y~---r~~k~--~gs~ithLDwS~Ds~~~~~~S~d~eiLy 517 (626)
T KOG2106|consen 474 YRVSANGRKYS---RVGKC--SGSPITHLDWSSDSQFLVSNSGDYEILY 517 (626)
T ss_pred EEECCCCcEEE---Eeeee--cCceeEEeeecCCCceEEeccCceEEEE
Confidence 2222222 12222 2389999999999999998887765554
No 68
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=5.8e-29 Score=226.80 Aligned_cols=449 Identities=14% Similarity=0.113 Sum_probs=291.7
Q ss_pred ccccceEEEEECCCCCeEEeec--CCCeEEEEEcccCcccCccccCcccc---cccccCCccceeeeeccc-CCC---cc
Q 010206 33 QEVDIISAIEFDKSGDHLATGD--RGGRVVLFERTDTRDNGGQRRDLEMM---DYSMSRHPEFRYKTEFQS-HEP---EF 103 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~lasg~--~dg~v~vw~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-h~~---~~ 103 (515)
.|..+++|++||++|+|+|+|- ....++||++.....+ ..+.++ ...++|+|..+++..... |+- .+
T Consensus 76 ssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vV----AEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~ 151 (1080)
T KOG1408|consen 76 SSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVV----AEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVN 151 (1080)
T ss_pred ccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccch----hhhhhccccceeeeecCCCcEEEeeccccceEEEhh
Confidence 5778999999999999999986 5667999999876533 222222 236789999988876543 321 12
Q ss_pred ccc-----ccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEE-Eeecc----------CCcccCCCCCCc
Q 010206 104 DYL-----KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKK-VFDWN----------VHPEKAAGNGPI 167 (515)
Q Consensus 104 ~~~-----~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~----------~~~~~~~~~~~v 167 (515)
+|- .+-.+...|.+++| ++++.|+++++. ..|++|.++.++..+ ...+. .......+.+.-
T Consensus 152 dWr~N~~~asnkiss~Vsav~f--sEdgSYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~g 228 (1080)
T KOG1408|consen 152 DWRVNSSGASNKISSVVSAVAF--SEDGSYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVG 228 (1080)
T ss_pred hhhhcccccccccceeEEEEEE--ccCCceeeeeee-eeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCc
Confidence 221 22256788999999 788989988775 789999998765111 10000 000000000100
Q ss_pred cCCCCcCCCceeecCCCcccc-----------------ccccCCCCCCCCCCCcccEEeeeeeecccccccc--------
Q 010206 168 FGSHVSAIPKSYMANGGCGER-----------------NFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLV-------- 222 (515)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~l~~-----------------~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-------- 222 (515)
...-+..++...|..... ..++.+.++++.|+.+|.|++++ -.+.+-...
T Consensus 229 ---icAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFn--p~tL~y~~Tlpr~halg 303 (1080)
T KOG1408|consen 229 ---ICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFN--PETLDYAGTLPRSHALG 303 (1080)
T ss_pred ---ccccceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecC--cchhhhccccccccccc
Confidence 000113344444433321 13455778999999999999987 333221100
Q ss_pred ------cceeeeee---ccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEe
Q 010206 223 ------AGCRRIYA---HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH 292 (515)
Q Consensus 223 ------~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~ 292 (515)
.++.+.+. .+.-...-++.|++....|.+. .|..+++||++..++.-+. ..+--|...|+++.--
T Consensus 304 ~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~-----~s~lyHS~ciW~Ve~~ 378 (1080)
T KOG1408|consen 304 SDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKC-----SSMLYHSACIWDVENL 378 (1080)
T ss_pred cchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccce-----eeeeeccceeeeeccc
Confidence 00111110 1111223467789988898888 8999999999977655332 2445577777777654
Q ss_pred cCC----------CcEEEEEecCCeEEEEecCccc---ccccccceeeeccC---CC---------------cccccccc
Q 010206 293 PTH----------CNMLAYSSSKGSIRLIDMRQSA---LCDTHSKLFEEQEA---PG---------------TRSFFTEI 341 (515)
Q Consensus 293 p~~----------~~~l~~~~~dg~i~~wd~~~~~---~~~~~~~~~~~~~~---~~---------------~~~~~~~~ 341 (515)
|-+ +..|++++.|++||+||+..+. ...+++..-+.... .. ......+.
T Consensus 379 p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~ 458 (1080)
T KOG1408|consen 379 PCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDS 458 (1080)
T ss_pred cccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCc
Confidence 410 1268999999999999997632 11111110000000 00 00011123
Q ss_pred ccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcC---CCCEEEEe
Q 010206 342 IASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG---DGGRVATG 417 (515)
Q Consensus 342 ~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~s~ 417 (515)
...+++++.||+|++|++|+. |.++||++.. ...+..+..|+.. |.++.||. ..++||++
T Consensus 459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~-l~~~~~~eAHesE---------------ilcLeyS~p~~~~kLLASa 522 (1080)
T KOG1408|consen 459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQE-LEYTCFMEAHESE---------------ILCLEYSFPVLTNKLLASA 522 (1080)
T ss_pred ccceEEEEECCCcceecccCccCceEEEEehh-hhhhhheecccce---------------eEEEeecCchhhhHhhhhc
Confidence 357999999999999999998 9999999985 7777788888865 45788875 35789999
Q ss_pred cCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCC--CeeEeecCCCeEEEecCCCCCcc--ccCCccccccCCeeEE
Q 010206 418 SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR--PSRPLGSLSGVVRRVKGADNSAL--DANGNAFDFSMKLLHL 493 (515)
Q Consensus 418 s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~d~~v~l~~~~~~~~~--~~~~~~~~~~~~i~~~ 493 (515)
+.|..|++||+...-.+++++.+|...|+++.|...| ..+++++.|+.+.+....+.... ........-+..+++|
T Consensus 523 srdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm 602 (1080)
T KOG1408|consen 523 SRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDM 602 (1080)
T ss_pred cCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEe
Confidence 9999999999998767779999999999999998777 67899999999888222211100 0111222235689999
Q ss_pred EEcCCCCEEEEEc-CCcEEEEe
Q 010206 494 AWHPSENSIACAA-SNSLYMYY 514 (515)
Q Consensus 494 ~~s~~~~~la~~~-~~~~~i~~ 514 (515)
+..|..+++++++ +.++.||.
T Consensus 603 ~Vdp~~k~v~t~cQDrnirif~ 624 (1080)
T KOG1408|consen 603 AVDPTSKLVVTVCQDRNIRIFD 624 (1080)
T ss_pred eeCCCcceEEEEecccceEEEe
Confidence 9999999999887 45688885
No 69
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=1.7e-28 Score=231.89 Aligned_cols=301 Identities=14% Similarity=0.175 Sum_probs=208.6
Q ss_pred chhhhhcccccccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecc
Q 010206 18 KFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ 97 (515)
Q Consensus 18 ~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (515)
+|+.+||.... .-.|-..|.....++|+..+++++.+.....|+...+... ..+...+. + +. ....+.
T Consensus 5 k~rh~~g~~~k--~~~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v----~~~~~~G~-~---~~--~~~~l~ 72 (493)
T PTZ00421 5 RFRHTQGVPAR--PDRHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAV----LKHTDYGK-L---AS--NPPILL 72 (493)
T ss_pred cccccccccCC--cccceeccccccccCCCCCcEeECCceEEEEEecCCceEE----eecccccc-C---CC--CCceEe
Confidence 56667775444 3345677888888889877888888888889987654321 11111110 0 00 012356
Q ss_pred cCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCc
Q 010206 98 SHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK 177 (515)
Q Consensus 98 ~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 177 (515)
+|. +.|++++|+|. ++.+|++++.|++|++||+.++......
T Consensus 73 GH~------------~~V~~v~fsP~-d~~~LaSgS~DgtIkIWdi~~~~~~~~~------------------------- 114 (493)
T PTZ00421 73 GQE------------GPIIDVAFNPF-DPQKLFTASEDGTIMGWGIPEEGLTQNI------------------------- 114 (493)
T ss_pred CCC------------CCEEEEEEcCC-CCCEEEEEeCCCEEEEEecCCCcccccc-------------------------
Confidence 777 88999999763 4569999999999999999764311000
Q ss_pred eeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCC-CEEEEe-CCC
Q 010206 178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDL 255 (515)
Q Consensus 178 ~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~-~d~ 255 (515)
..+... +.+|...|.+++|+|++ .+|+++ .|+
T Consensus 115 ---------------------------------------------~~~l~~-L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 115 ---------------------------------------------SDPIVH-LQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ---------------------------------------------CcceEE-ecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 000111 46899999999999985 688887 899
Q ss_pred cEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcc
Q 010206 256 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 335 (515)
Q Consensus 256 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 335 (515)
+|++||+++++... .+.+|...|.+++|+|++ .+|++++.|+.|++||+++++... .
T Consensus 149 tVrIWDl~tg~~~~--------~l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v~----t---------- 205 (493)
T PTZ00421 149 VVNVWDVERGKAVE--------VIKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIVS----S---------- 205 (493)
T ss_pred EEEEEECCCCeEEE--------EEcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcEEE----E----------
Confidence 99999998765432 456789999999999998 899999999999999999876432 2
Q ss_pred ccccccccc-eeEEEEccCCCEEEEEc-----CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcC
Q 010206 336 SFFTEIIAS-ISDIKFARNGRHILSRD-----YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 409 (515)
Q Consensus 336 ~~~~~~~~~-i~~~~~s~~~~~l~s~~-----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 409 (515)
+.+|.+. ...+.|.+++..+++++ ++.|++||+++...++.....+... .+....|++
T Consensus 206 --l~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~--------------~~~~~~~d~ 269 (493)
T PTZ00421 206 --VEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSS--------------ALFIPFFDE 269 (493)
T ss_pred --EecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCC--------------ceEEEEEcC
Confidence 2334333 44677888877777632 4899999998644455444322211 123567899
Q ss_pred CCCEEEEec-CCCcEEEEecCCCCcceeeec-cCCCceeeEEECCCC
Q 010206 410 DGGRVATGS-YSNLFRVFGCSEGSAESTTLE-ASKNPMRRQVQTPSR 454 (515)
Q Consensus 410 ~~~~l~s~s-~dg~i~iw~~~~~~~~~~~~~-~~~~~v~~~~~~~~~ 454 (515)
++++|++++ .|+.|++||+.++. ....++ .+..+...+++.|..
T Consensus 270 d~~~L~lggkgDg~Iriwdl~~~~-~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 270 DTNLLYIGSKGEGNIRCFELMNER-LTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred CCCEEEEEEeCCCeEEEEEeeCCc-eEEEeeccCCCCCcceEecccc
Confidence 999999887 59999999999874 333333 345677888887753
No 70
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.1e-29 Score=216.81 Aligned_cols=281 Identities=16% Similarity=0.274 Sum_probs=218.3
Q ss_pred ccccccceEEEEECCCCC-eEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 31 EVQEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~-~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
.....+.|++++|||... -+|+.+ .-++.||+..+.... ..+....
T Consensus 22 ~~ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~-----------------------k~~srFk--------- 68 (487)
T KOG0310|consen 22 VHKEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVR-----------------------KTFSRFK--------- 68 (487)
T ss_pred cccccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhh-----------------------hhHHhhc---------
Confidence 345568999999999544 355554 347999998765432 1122222
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..|.++.| ..||.+|++|...|.|++||+.+..+..
T Consensus 69 ---~~v~s~~f--R~DG~LlaaGD~sG~V~vfD~k~r~iLR--------------------------------------- 104 (487)
T KOG0310|consen 69 ---DVVYSVDF--RSDGRLLAAGDESGHVKVFDMKSRVILR--------------------------------------- 104 (487)
T ss_pred ---cceeEEEe--ecCCeEEEccCCcCcEEEeccccHHHHH---------------------------------------
Confidence 66999999 6789899999999999999955421100
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEE-Ee-CCCcEEEEeCCCCCc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI-SA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~-~d~~i~iwd~~~~~~ 267 (515)
. +.+|+.+|..+.|+|++..++ +| +|+.+++||+.+...
T Consensus 105 --------------------------------------~-~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v 145 (487)
T KOG0310|consen 105 --------------------------------------Q-LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV 145 (487)
T ss_pred --------------------------------------H-HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE
Confidence 0 468999999999999766555 56 799999999987663
Q ss_pred ccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 347 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (515)
. ..+.+|++.|+|.+|+|..+.++++|+.||.|++||++.... .+.. -.|..+|..
T Consensus 146 ~--------~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~---~v~e-------------lnhg~pVe~ 201 (487)
T KOG0310|consen 146 Q--------AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS---RVVE-------------LNHGCPVES 201 (487)
T ss_pred E--------EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc---eeEE-------------ecCCCceee
Confidence 2 166889999999999998768999999999999999988631 1111 235578999
Q ss_pred EEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 348 IKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 348 ~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
+.+-|.|..+++++...+++||+.++++.+..+..|... |+|+++..++..|++|+-|+.|++||
T Consensus 202 vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~Kt---------------VTcL~l~s~~~rLlS~sLD~~VKVfd 266 (487)
T KOG0310|consen 202 VLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKT---------------VTCLRLASDSTRLLSGSLDRHVKVFD 266 (487)
T ss_pred EEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccce---------------EEEEEeecCCceEeecccccceEEEE
Confidence 999999999999988999999999877777777667655 77999999999999999999999999
Q ss_pred cCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 428 CSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+.+. +.+..+ .-..||-+++.+|+++.++.|-.+|.+.+
T Consensus 267 ~t~~-Kvv~s~-~~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 267 TTNY-KVVHSW-KYPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred ccce-EEEEee-ecccceeeEEecCCCceEEEecccceeee
Confidence 7654 333333 23568888999999999999988888877
No 71
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.4e-28 Score=197.18 Aligned_cols=239 Identities=18% Similarity=0.237 Sum_probs=188.6
Q ss_pred cCCeEEEEecCCC-CEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEE
Q 010206 234 DYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 311 (515)
Q Consensus 234 ~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~w 311 (515)
...+..++|++.. +.++++ .||++++||+.....++ ..++.|...|.++.|++.....+++++.|++|++|
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi-------~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW 132 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPI-------HKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLW 132 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcch-------hHHHhhhhheEEeccccccceeEEeeccCCceEee
Confidence 3667899999863 344555 89999999976555443 26788999999999999876888999999999999
Q ss_pred ecCcccccccccceeeeccCCCccccccccccceeEEEEcc-CCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeecccccc
Q 010206 312 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPK 389 (515)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~ 389 (515)
+....+.+ .++.+|...|...+|+| .+.++++++ |+++++||++.+++.+. +..|...
T Consensus 133 ~~~r~~Sv----------------~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~E--- 192 (311)
T KOG0277|consen 133 DPNRPNSV----------------QTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSE--- 192 (311)
T ss_pred cCCCCcce----------------EeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccce---
Confidence 98765442 23677889999999999 567777765 59999999998776665 7777643
Q ss_pred ccccccCCCccceeeEEEcC-CCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCC-CeeEeecCCCeEE
Q 010206 390 LCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR-PSRPLGSLSGVVR 467 (515)
Q Consensus 390 ~~~~~~~~~~~~v~~~~~s~-~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~ 467 (515)
+.++.|+. +.+.|+||+.|+.|+.||+++-...+.++.+|.-.|+.+.++|.. ..|||++-|-++|
T Consensus 193 ------------il~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~r 260 (311)
T KOG0277|consen 193 ------------ILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVR 260 (311)
T ss_pred ------------eEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEE
Confidence 55899987 566789999999999999998877778999999999999999975 4789999999999
Q ss_pred EecCCCCCccc-cCCccccccCCeeEEEEcCC-CCEEEEEc-CCcEEEEe
Q 010206 468 RVKGADNSALD-ANGNAFDFSMKLLHLAWHPS-ENSIACAA-SNSLYMYY 514 (515)
Q Consensus 468 l~~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~-~~~la~~~-~~~~~i~~ 514 (515)
+ +++.... .....--|+..+..+.||+- ..++|..+ +..++||+
T Consensus 261 i---w~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 261 I---WDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred e---cccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 9 4333111 11112247788999999985 66788666 66799997
No 72
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.9e-29 Score=211.83 Aligned_cols=282 Identities=13% Similarity=0.157 Sum_probs=213.9
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
|...|.-+.| +++|++||+++.|.+..+|++......
T Consensus 223 htdEVWfl~F--S~nGkyLAsaSkD~Taiiw~v~~d~~~----------------------------------------- 259 (519)
T KOG0293|consen 223 HTDEVWFLQF--SHNGKYLASASKDSTAIIWIVVYDVHF----------------------------------------- 259 (519)
T ss_pred CCCcEEEEEE--cCCCeeEeeccCCceEEEEEEecCcce-----------------------------------------
Confidence 3478999999 677899999999999999987643211
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
++ .++ +.+|..+|..+.|+||.++|+++ .|..+.+||+.++....
T Consensus 260 -----------------kl----------------~~t-lvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~ 305 (519)
T KOG0293|consen 260 -----------------KL----------------KKT-LVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRH 305 (519)
T ss_pred -----------------ee----------------eee-eecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhh
Confidence 10 111 46899999999999999999998 68889999999887553
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
.. -.++...+.+++|.||| ..+++|+.|+.|..||+.... ...|++.+. ..|.+++
T Consensus 306 ~y-------~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~-----~~~W~gvr~-----------~~v~dla 361 (519)
T KOG0293|consen 306 LY-------PSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNI-----LGNWEGVRD-----------PKVHDLA 361 (519)
T ss_pred hc-------ccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcch-----hhccccccc-----------ceeEEEE
Confidence 21 12245789999999999 899999999999999986543 233444332 3599999
Q ss_pred EccCCCEEEE-EcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEec
Q 010206 350 FARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 428 (515)
Q Consensus 350 ~s~~~~~l~s-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~ 428 (515)
+++||+++++ +.|..|++++... .........+. ++++.++|.|++++.+.=.+..+++||+
T Consensus 362 it~Dgk~vl~v~~d~~i~l~~~e~-~~dr~lise~~----------------~its~~iS~d~k~~LvnL~~qei~LWDl 424 (519)
T KOG0293|consen 362 ITYDGKYVLLVTVDKKIRLYNREA-RVDRGLISEEQ----------------PITSFSISKDGKLALVNLQDQEIHLWDL 424 (519)
T ss_pred EcCCCcEEEEEecccceeeechhh-hhhhccccccC----------------ceeEEEEcCCCcEEEEEcccCeeEEeec
Confidence 9999999887 4569999999874 33332332222 1569999999999999999999999999
Q ss_pred CCCCcceeeeccCCCcee--eEEEC-CCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCC-EEEE
Q 010206 429 SEGSAESTTLEASKNPMR--RQVQT-PSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN-SIAC 504 (515)
Q Consensus 429 ~~~~~~~~~~~~~~~~v~--~~~~~-~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~la~ 504 (515)
+.. .++..+.+|...-. .-+|. .+..+++|||+|+.|++ |......+...+.+|...|++++|+|..+ ++|+
T Consensus 425 ~e~-~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyI---Whr~sgkll~~LsGHs~~vNcVswNP~~p~m~AS 500 (519)
T KOG0293|consen 425 EEN-KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYI---WHRISGKLLAVLSGHSKTVNCVSWNPADPEMFAS 500 (519)
T ss_pred chh-hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEE---EEccCCceeEeecCCcceeeEEecCCCCHHHhhc
Confidence 954 55577788865422 33443 45589999999999999 33333344556778999999999999865 5778
Q ss_pred EcCCc-EEEEe
Q 010206 505 AASNS-LYMYY 514 (515)
Q Consensus 505 ~~~~~-~~i~~ 514 (515)
|++|| +.||.
T Consensus 501 asDDgtIRIWg 511 (519)
T KOG0293|consen 501 ASDDGTIRIWG 511 (519)
T ss_pred cCCCCeEEEec
Confidence 87766 88885
No 73
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=2.3e-27 Score=215.78 Aligned_cols=421 Identities=15% Similarity=0.210 Sum_probs=266.9
Q ss_pred cccccccceEEEEECCCCC---eEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccc
Q 010206 30 EEVQEVDIISAIEFDKSGD---HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~---~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 106 (515)
...+|..+|+|+.|-|+.+ ++++|+.||.|.+|.+..... ..+..+++|.
T Consensus 49 ~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~---------------------~~i~~~~g~~------ 101 (764)
T KOG1063|consen 49 TLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYL---------------------IKIYTIQGHC------ 101 (764)
T ss_pred eccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehhe---------------------EEEEeecCcc------
Confidence 3568999999999999887 899999999999999974332 2455677776
Q ss_pred ccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcc---------------cCCCCCC-cc--
Q 010206 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPE---------------KAAGNGP-IF-- 168 (515)
Q Consensus 107 ~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---------------~~~~~~~-v~-- 168 (515)
+.++++.. ........+.|+++.+||.+..+........+... ..++.|. ..
T Consensus 102 --------~~~~cv~a--~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v 171 (764)
T KOG1063|consen 102 --------KECVCVVA--RSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVV 171 (764)
T ss_pred --------eeEEEEEe--eeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEE
Confidence 44555521 11122223688999999986555221111111100 0000000 00
Q ss_pred ---CCCC-cCC-------------CceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeeccccccc----------
Q 010206 169 ---GSHV-SAI-------------PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNL---------- 221 (515)
Q Consensus 169 ---~~~~-~~~-------------~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~---------- 221 (515)
+... .+. +++|..-+. ..-++++++.|..|+||.|.+.+.+...
T Consensus 172 ~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~---------~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~ 242 (764)
T KOG1063|consen 172 DLYSSSADSFARVAELEGHTDWIRSLAFARLGG---------DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLS 242 (764)
T ss_pred EEeccCCcceeEEEEeeccchhhhhhhhhccCC---------CcEEEEecCCceEEEEEEEEecCCcccccccccccccc
Confidence 0000 000 111111111 1236689999999999997555522200
Q ss_pred ---cccee---------eeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEE
Q 010206 222 ---VAGCR---------RIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITS 288 (515)
Q Consensus 222 ---~~~~~---------~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 288 (515)
..... ...+.||...|.++.|+|.+..|+++ .|.++.+|...+..-... ..++...+.+.......
T Consensus 243 ~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv-~~vRlGe~gg~a~GF~g 321 (764)
T KOG1063|consen 243 NLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWV-DVVRLGEVGGSAGGFWG 321 (764)
T ss_pred CCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEE-EEEEeecccccccceee
Confidence 00000 12235999999999999999777777 899999998875432211 01111233344566889
Q ss_pred EEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-CCeEEE
Q 010206 289 AEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKL 367 (515)
Q Consensus 289 i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~i 367 (515)
..|+|++ +.+++-+..|..++|-...... +. ....+.||...|.+++|+|.|.+|++.+ |.+-|+
T Consensus 322 ~lw~~n~-~~ii~~g~~Gg~hlWkt~d~~~-------w~------~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRl 387 (764)
T KOG1063|consen 322 GLWSPNS-NVIIAHGRTGGFHLWKTKDKTF-------WT------QEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRL 387 (764)
T ss_pred EEEcCCC-CEEEEecccCcEEEEeccCccc-------ee------eccccccccccceeeeecCCCCEEEEeccccceee
Confidence 9999998 8999999999999998333211 11 1234788999999999999999999854 566666
Q ss_pred EEee----------C------------------------CCCCeeeEeeeccc-----------------------cc--
Q 010206 368 WDIN----------M------------------------DSGPVATFQVHEHL-----------------------RP-- 388 (515)
Q Consensus 368 wd~~----------~------------------------~~~~~~~~~~~~~~-----------------------~~-- 388 (515)
|-.- . ..+.++.|..+... ++
T Consensus 388 Fa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaL 467 (764)
T KOG1063|consen 388 FARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPAL 467 (764)
T ss_pred ecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccc
Confidence 5321 0 00111111110000 00
Q ss_pred -------------------------------------------------cccccccCCCccceeeEEEcCCCCEEEEecC
Q 010206 389 -------------------------------------------------KLCDLYENDSIFDKFECCLSGDGGRVATGSY 419 (515)
Q Consensus 389 -------------------------------------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~ 419 (515)
...++| +.-++|++++.+|+|+++||++.
T Consensus 468 GLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLY--GHGyEv~~l~~s~~gnliASaCK 545 (764)
T KOG1063|consen 468 GLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLY--GHGYEVYALAISPTGNLIASACK 545 (764)
T ss_pred cccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhc--cCceeEEEEEecCCCCEEeehhh
Confidence 000011 11247899999999999999875
Q ss_pred C-----CcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCc-cccccCCeeEE
Q 010206 420 S-----NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGN-AFDFSMKLLHL 493 (515)
Q Consensus 420 d-----g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~-~~~~~~~i~~~ 493 (515)
. ..|++|+..+-. ..+.+++|.-.|+.++|+||+++|++.|.|+++.+++-.+....++... .-.|..-|.++
T Consensus 546 S~~~ehAvI~lw~t~~W~-~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdc 624 (764)
T KOG1063|consen 546 SSLKEHAVIRLWNTANWL-QVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDC 624 (764)
T ss_pred hCCccceEEEEEeccchh-hhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEc
Confidence 4 368999998763 4468999999999999999999999999999999943333222222222 23588899999
Q ss_pred EEcCCCCEEEEEcCC-cEEEEe
Q 010206 494 AWHPSENSIACAASN-SLYMYY 514 (515)
Q Consensus 494 ~~s~~~~~la~~~~~-~~~i~~ 514 (515)
+|+||+.++|+++-| .+.+|.
T Consensus 625 sW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 625 SWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred ccCcccceeEEecCCceEEEEe
Confidence 999999999999955 577774
No 74
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=1e-29 Score=217.24 Aligned_cols=283 Identities=18% Similarity=0.238 Sum_probs=223.0
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
.-.|...|..+.|-++...|++|+.|..|++|++...+.. +..++.+..
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~---------------------~~~tLaGs~---------- 219 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSE---------------------LISTLAGSL---------- 219 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccchhh---------------------hhhhhhccC----------
Confidence 3468999999999999889999999999999998766522 334556655
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
+.|+.+.| ..++.+++++++|+.+++|++.+.+....
T Consensus 220 --g~it~~d~--d~~~~~~iAas~d~~~r~Wnvd~~r~~~T--------------------------------------- 256 (459)
T KOG0288|consen 220 --GNITSIDF--DSDNKHVIAASNDKNLRLWNVDSLRLRHT--------------------------------------- 256 (459)
T ss_pred --CCcceeee--cCCCceEEeecCCCceeeeeccchhhhhh---------------------------------------
Confidence 77999999 77888999999999999999987653221
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
+.+|...|+++.|......+++| .|.+|++||+.......
T Consensus 257 ---------------------------------------LsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~k 297 (459)
T KOG0288|consen 257 ---------------------------------------LSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSK 297 (459)
T ss_pred ---------------------------------------hcccccceeeehhhccccceeeccccchhhhhhhhhhheec
Confidence 46899999999998877778888 89999999998755443
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
.++ ....+..|+.++ ..+++|..|++|++||.+...... ..+. .+.|+++.
T Consensus 298 t~l---------~~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~~~----sv~~-------------gg~vtSl~ 348 (459)
T KOG0288|consen 298 TVL---------PGSQCNDIVCSI---SDVISGHFDKKVRFWDIRSADKTR----SVPL-------------GGRVTSLD 348 (459)
T ss_pred ccc---------ccccccceEecc---eeeeecccccceEEEeccCCceee----Eeec-------------CcceeeEe
Confidence 321 234455666652 579999999999999999876532 1111 15799999
Q ss_pred EccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEec
Q 010206 350 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 428 (515)
Q Consensus 350 ~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~ 428 (515)
.+++|..|.+++. .++.+.|+++ .....++...... +-.+.+.+.|||++.|+++||.||.|+||++
T Consensus 349 ls~~g~~lLsssRDdtl~viDlRt-~eI~~~~sA~g~k-----------~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v 416 (459)
T KOG0288|consen 349 LSMDGLELLSSSRDDTLKVIDLRT-KEIRQTFSAEGFK-----------CASDWTRVVFSPDGSYVAAGSADGSVYIWSV 416 (459)
T ss_pred eccCCeEEeeecCCCceeeeeccc-ccEEEEeeccccc-----------cccccceeEECCCCceeeeccCCCcEEEEEc
Confidence 9999999988764 8999999996 6666666654322 1123458999999999999999999999999
Q ss_pred CCCCcceeeeccCCC--ceeeEEECCCCCeeEeecCCCeEEE
Q 010206 429 SEGSAESTTLEASKN--PMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 429 ~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.+++ +...+..... .|.++.|.|.|..|++++.++.+++
T Consensus 417 ~tgK-lE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~l 457 (459)
T KOG0288|consen 417 FTGK-LEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTL 457 (459)
T ss_pred cCce-EEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEe
Confidence 9884 4455554444 5999999999999999999998887
No 75
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=2.3e-28 Score=234.02 Aligned_cols=316 Identities=16% Similarity=0.226 Sum_probs=233.3
Q ss_pred ccccceEEEEECCCCCeEEeec--CCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 33 QEVDIISAIEFDKSGDHLATGD--RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~lasg~--~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
++...|.+++.+|||..+|||+ .||.++||+...--.. ....... -.+.+.+...|.
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~------~~~~~~~-----l~k~l~~m~~h~---------- 69 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDE------KEEKNEN-----LPKHLCTMDDHD---------- 69 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccch------hhhhhcc-----cchhheeecccc----------
Confidence 3456799999999999999999 8999999996532110 0000000 012334455666
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
+.|+|+.| ++||++||+|+.|+.|.+|...... .+.++
T Consensus 70 --~sv~CVR~--S~dG~~lAsGSDD~~v~iW~~~~~~----------------~~~~f---------------------- 107 (942)
T KOG0973|consen 70 --GSVNCVRF--SPDGSYLASGSDDRLVMIWERAEIG----------------SGTVF---------------------- 107 (942)
T ss_pred --CceeEEEE--CCCCCeEeeccCcceEEEeeecccC----------------Ccccc----------------------
Confidence 89999999 6789999999999999999876410 01111
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
-+++....+.-|. +... +.+|...|..++|+|++.+|+++ -|++|.+|+..+.+..
T Consensus 108 --------gs~g~~~~vE~wk-------------~~~~-l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~- 164 (942)
T KOG0973|consen 108 --------GSTGGAKNVESWK-------------VVSI-LRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELL- 164 (942)
T ss_pred --------cccccccccceee-------------EEEE-EecCCCccceeccCCCccEEEEecccceEEEEccccceee-
Confidence 1112222333333 2223 47899999999999999999998 7999999999987433
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
. .+.+|.+.|..+.|.|-| ++|++-+.|++|++|++.+........+.|+... ...-+..+.
T Consensus 165 ~-------vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~----------~~T~f~RlS 226 (942)
T KOG0973|consen 165 K-------VLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESP----------LTTFFLRLS 226 (942)
T ss_pred e-------eeecccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccchhhCC----------Ccceeeecc
Confidence 2 678999999999999999 9999999999999999766444322222332211 124578899
Q ss_pred EccCCCEEEEEc-----CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCC-------------C
Q 010206 350 FARNGRHILSRD-----YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD-------------G 411 (515)
Q Consensus 350 ~s~~~~~l~s~~-----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-------------~ 411 (515)
|||||++|++.. ...+.|.+-.+ -+.-..+.+|... +..+.|+|. .
T Consensus 227 WSPDG~~las~nA~n~~~~~~~IieR~t-Wk~~~~LvGH~~p---------------~evvrFnP~lfe~~~~ng~~~~~ 290 (942)
T KOG0973|consen 227 WSPDGHHLASPNAVNGGKSTIAIIERGT-WKVDKDLVGHSAP---------------VEVVRFNPKLFERNNKNGTSTQP 290 (942)
T ss_pred cCCCcCeecchhhccCCcceeEEEecCC-ceeeeeeecCCCc---------------eEEEEeChHHhccccccCCccCC
Confidence 999999999842 26788888764 6667788888876 347777762 1
Q ss_pred C----EEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 412 G----RVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 412 ~----~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+ .+|+|+.|++|.||......++....+-....|..+.|+|||..|..+|.||+|.+
T Consensus 291 ~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~ 351 (942)
T KOG0973|consen 291 NCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVAL 351 (942)
T ss_pred CcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEE
Confidence 1 57899999999999987766665566667889999999999999999999999998
No 76
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=4.6e-28 Score=208.52 Aligned_cols=281 Identities=17% Similarity=0.261 Sum_probs=229.4
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccce
Q 010206 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (515)
Q Consensus 35 ~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (515)
...++++...|..+.+++|+.|..+.++|...++ .+..+.||. ..
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q-----------------------~l~~~~Gh~------------kk 263 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQ-----------------------ILATLKGHT------------KK 263 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhh-----------------------hhhhccCcc------------eE
Confidence 4678999998887899999999999999987665 457899998 88
Q ss_pred eEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCC
Q 010206 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (515)
Q Consensus 115 v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~ 194 (515)
|+.+.|+|.. ...++++.|..|++|.........
T Consensus 264 i~~v~~~~~~--~~v~~aSad~~i~vws~~~~s~~~-------------------------------------------- 297 (506)
T KOG0289|consen 264 ITSVKFHKDL--DTVITASADEIIRVWSVPLSSEPT-------------------------------------------- 297 (506)
T ss_pred EEEEEeccch--hheeecCCcceEEeeccccccCcc--------------------------------------------
Confidence 9999996654 489999999999999876532100
Q ss_pred CCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceec
Q 010206 195 NDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 273 (515)
Q Consensus 195 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~ 273 (515)
....|..+|+.+..+|.|.+|+++ .|++..+.|++++.......
T Consensus 298 ----------------------------------~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs- 342 (506)
T KOG0289|consen 298 ----------------------------------SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVS- 342 (506)
T ss_pred ----------------------------------ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEe-
Confidence 035788999999999999999999 89999999999887654321
Q ss_pred ccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccC
Q 010206 274 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 353 (515)
Q Consensus 274 ~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 353 (515)
-+...-.+++.+|+||| .+|.+|..|+.+++||+..+....+ |.+|+++|..++|+.+
T Consensus 343 -----~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~a~----------------Fpght~~vk~i~FsEN 400 (506)
T KOG0289|consen 343 -----DETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNVAK----------------FPGHTGPVKAISFSEN 400 (506)
T ss_pred -----eccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCcccccc----------------CCCCCCceeEEEeccC
Confidence 11223458999999999 9999999999999999988764332 7889999999999999
Q ss_pred CCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCC
Q 010206 354 GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 432 (515)
Q Consensus 354 ~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~ 432 (515)
|-+|+++.+ +.|++||++. .+..+++...... ++.++.|.+.|.+|+.++.|=+|++++-.+..
T Consensus 401 GY~Lat~add~~V~lwDLRK-l~n~kt~~l~~~~--------------~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~ 465 (506)
T KOG0289|consen 401 GYWLATAADDGSVKLWDLRK-LKNFKTIQLDEKK--------------EVNSLSFDQSGTYLGIAGSDLQVYICKKKTKS 465 (506)
T ss_pred ceEEEEEecCCeEEEEEehh-hcccceeeccccc--------------cceeEEEcCCCCeEEeecceeEEEEEeccccc
Confidence 999999765 8899999997 6777777655432 24589999999999999888777777755443
Q ss_pred cc-eeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 433 AE-STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 433 ~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.. ...+..|....+.+.|....++++++|.|..+++
T Consensus 466 W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 466 WTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRL 502 (506)
T ss_pred ceeeehhhhcccccceeeecccceEEeeccchhheEE
Confidence 33 3567778888999999999999999999999887
No 77
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.2e-27 Score=196.70 Aligned_cols=280 Identities=17% Similarity=0.233 Sum_probs=213.6
Q ss_pred ccccceEEEEECC-CCCeEEeecCCCeEEEEEcccC-cccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 33 QEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDT-RDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 33 ~h~~~v~~v~~s~-~g~~lasg~~dg~v~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
.-.+.|.+|+||| ...++++|+.||+||+|+++.. ... | .....|+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~-----------------~-----ka~~~~~---------- 72 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV-----------------P-----KAQQSHD---------- 72 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCccc-----------------c-----hhhhccC----------
Confidence 4568999999999 5667779999999999999864 221 0 2234455
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
++|.+++| +.+|..+++|+.|+.+++||+.+++...
T Consensus 73 --~PvL~v~W--sddgskVf~g~~Dk~~k~wDL~S~Q~~~---------------------------------------- 108 (347)
T KOG0647|consen 73 --GPVLDVCW--SDDGSKVFSGGCDKQAKLWDLASGQVSQ---------------------------------------- 108 (347)
T ss_pred --CCeEEEEE--ccCCceEEeeccCCceEEEEccCCCeee----------------------------------------
Confidence 89999999 6788899999999999999999886332
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCC--EEEEe-CCCcEEEEeCCCCCc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE--TFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~ 267 (515)
...|..+|.++.|-+... .|++| .|.+|+.||.+...+
T Consensus 109 ---------------------------------------v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p 149 (347)
T KOG0647|consen 109 ---------------------------------------VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP 149 (347)
T ss_pred ---------------------------------------eeecccceeEEEEecCCCcceeEecccccceeecccCCCCe
Confidence 246778888888866544 88999 799999999997665
Q ss_pred ccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 347 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (515)
...+ ...+.++++..-. .+++.+..++.|.+|+++++....+... ....-.++|
T Consensus 150 v~t~---------~LPeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te~k~~~--------------SpLk~Q~R~ 203 (347)
T KOG0647|consen 150 VATL---------QLPERVYAADVLY---PMAVVATAERHIAVYNLENPPTEFKRIE--------------SPLKWQTRC 203 (347)
T ss_pred eeee---------eccceeeehhccC---ceeEEEecCCcEEEEEcCCCcchhhhhc--------------CcccceeeE
Confidence 5332 1356677766543 4788899999999999988653221111 111235899
Q ss_pred EEEccCCCEEEEEcC-CeEEEEEeeCC-CCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEE
Q 010206 348 IKFARNGRHILSRDY-MTLKLWDINMD-SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 425 (515)
Q Consensus 348 ~~~s~~~~~l~s~~~-~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~i 425 (515)
++..+|....+.|+- |++.|..+..+ .+.-.+|+.|..... . ++.++.|.+++|+|.-..|+|++.||++.+
T Consensus 204 va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~-~-----~~~VYaVNsi~FhP~hgtlvTaGsDGtf~F 277 (347)
T KOG0647|consen 204 VACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNS-V-----NDDVYAVNSIAFHPVHGTLVTAGSDGTFSF 277 (347)
T ss_pred EEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCC-C-----CCceEEecceEeecccceEEEecCCceEEE
Confidence 999998887788875 99999988751 245567788875432 1 134677889999999999999999999999
Q ss_pred EecCCCCcceeeeccCCCceeeEEECCCCCeeEee
Q 010206 426 FGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG 460 (515)
Q Consensus 426 w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 460 (515)
||-... ..+.+.+.|..+|++..|..+|.++|.+
T Consensus 278 WDkdar-~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 278 WDKDAR-TKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ecchhh-hhhhccCcCCCccceeEecCCCCEEEEE
Confidence 998766 4447778899999999999999988665
No 78
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=6.6e-28 Score=209.20 Aligned_cols=299 Identities=13% Similarity=0.194 Sum_probs=224.7
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccC-cccccccccCCccceeeeec-ccCCCccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRD-LEMMDYSMSRHPEFRYKTEF-QSHEPEFDYLKS 108 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~ 108 (515)
...|..+|+|++++||+++..+++.+|+|.-|++.+++...-+... ...+. .+.....- ..|.
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~-------~~~~~k~~r~~h~-------- 202 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKS-------HGNPLKESRKGHV-------- 202 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhh-------ccCCCCccccccc--------
Confidence 3579999999999999999999999999999999988754111110 00000 00000001 1444
Q ss_pred ccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccc
Q 010206 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (515)
Q Consensus 109 ~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~ 188 (515)
..|.+++. ++|+++|++|+.|..|.||+.++.+..+.
T Consensus 203 ----keil~~av--S~Dgkylatgg~d~~v~Iw~~~t~ehv~~------------------------------------- 239 (479)
T KOG0299|consen 203 ----KEILTLAV--SSDGKYLATGGRDRHVQIWDCDTLEHVKV------------------------------------- 239 (479)
T ss_pred ----ceeEEEEE--cCCCcEEEecCCCceEEEecCcccchhhc-------------------------------------
Confidence 67899999 67889999999999999999988652221
Q ss_pred ccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCc
Q 010206 189 NFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
+.+|.+.|.+++|-.....|.++ .|++|++|+++....
T Consensus 240 -----------------------------------------~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ 278 (479)
T KOG0299|consen 240 -----------------------------------------FKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY 278 (479)
T ss_pred -----------------------------------------ccccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence 36899999999998877777776 899999999985543
Q ss_pred ccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 347 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (515)
. .++.+|++.|.+|....-+ +.+-+|+.|+++++|++.... +.++.+|.+.+.|
T Consensus 279 v--------etlyGHqd~v~~IdaL~re-R~vtVGgrDrT~rlwKi~ees-----------------qlifrg~~~sidc 332 (479)
T KOG0299|consen 279 V--------ETLYGHQDGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEES-----------------QLIFRGGEGSIDC 332 (479)
T ss_pred H--------HHHhCCccceeeechhccc-ceEEeccccceeEEEeccccc-----------------eeeeeCCCCCeee
Confidence 3 2678999999999988877 788888899999999995432 1235666788999
Q ss_pred EEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEE
Q 010206 348 IKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 426 (515)
Q Consensus 348 ~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw 426 (515)
++|-. ...+++|++ |.|.+|++.+ .+++.+.....+..+.......+ +.|++++..|...++++|+.+|.|++|
T Consensus 333 v~~In-~~HfvsGSdnG~IaLWs~~K-Kkplf~~~~AHgv~~~~~~~~~~---~Witsla~i~~sdL~asGS~~G~vrLW 407 (479)
T KOG0299|consen 333 VAFIN-DEHFVSGSDNGSIALWSLLK-KKPLFTSRLAHGVIPELDPVNGN---FWITSLAVIPGSDLLASGSWSGCVRLW 407 (479)
T ss_pred EEEec-ccceeeccCCceEEEeeecc-cCceeEeeccccccCCccccccc---cceeeeEecccCceEEecCCCCceEEE
Confidence 99984 467888877 9999999997 88888876555443322111111 468899999999999999999999999
Q ss_pred ecCCCCc---ceeeeccCCCceeeEEECCCCCeeEee
Q 010206 427 GCSEGSA---ESTTLEASKNPMRRQVQTPSRPSRPLG 460 (515)
Q Consensus 427 ~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~ 460 (515)
.+..+-. ++..+. -...|++++|+++|+.+++|
T Consensus 408 ~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 408 KIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred EecCCccccceeeecc-cccEEEEEEEccCCCEEEEe
Confidence 9998732 223333 45779999999999977666
No 79
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=7.7e-28 Score=219.55 Aligned_cols=368 Identities=15% Similarity=0.196 Sum_probs=241.2
Q ss_pred eEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEE
Q 010206 38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117 (515)
Q Consensus 38 v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~ 117 (515)
..++.|++...+|..-..|..++|||+.+-...+++ ..+-.|. ..|..
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~--------------------~s~lyHS------------~ciW~ 374 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKC--------------------SSMLYHS------------ACIWD 374 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccce--------------------eeeeecc------------ceeee
Confidence 357889998999999999999999999877655333 1223343 34444
Q ss_pred EEEee----c-----CCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccc
Q 010206 118 IRWCQ----S-----ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (515)
Q Consensus 118 l~~~~----~-----~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~ 188 (515)
+.-.| + -+...|.+++.|++|++|++..+....+..-+.-. .
T Consensus 375 Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils----------------------~------- 425 (1080)
T KOG1408|consen 375 VENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILS----------------------A------- 425 (1080)
T ss_pred eccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccch----------------------h-------
Confidence 44333 0 01246999999999999999874322222211100 0
Q ss_pred ccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCc
Q 010206 189 NFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
++.-....|+...+. .+.+... +.......-+....+++++.+|+++.|++| ..|++++|++...+.
T Consensus 426 -------~l~ki~y~d~~~q~~----~d~~~~~-fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~ 493 (1080)
T KOG1408|consen 426 -------NLSKIPYEDSTQQIM----HDASAGI-FDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY 493 (1080)
T ss_pred -------hhhcCccccCchhhh----hhccCCc-ccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh
Confidence 000001111111110 0000000 000000012344679999999999999999 699999999986654
Q ss_pred ccceecccCccccccCCceEEEEEecC--CCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccce
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 345 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 345 (515)
.. .++.|...|.|+.|+.- +.++|++++.|+.|++||+...... ...+.+|++.|
T Consensus 494 ~~--------~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l---------------~qtld~HSssI 550 (1080)
T KOG1408|consen 494 TC--------FMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDL---------------VQTLDGHSSSI 550 (1080)
T ss_pred hh--------heecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccch---------------hhhhcccccce
Confidence 43 66889999999999852 2368999999999999998664332 23477899999
Q ss_pred eEEEEccCC--CEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcE
Q 010206 346 SDIKFARNG--RHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 423 (515)
Q Consensus 346 ~~~~~s~~~--~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i 423 (515)
+++.|.-.| ..+++++......|+..........+..|.....+ . .++.++..|..+++++++.|..|
T Consensus 551 TsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~k-t---------TlYDm~Vdp~~k~v~t~cQDrni 620 (1080)
T KOG1408|consen 551 TSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSK-T---------TLYDMAVDPTSKLVVTVCQDRNI 620 (1080)
T ss_pred eEEEEeecCCceEEEeccCchhhheehhccccCceecccccccccc-c---------eEEEeeeCCCcceEEEEecccce
Confidence 999998766 56666543233445543211112222222222111 1 13489999999999999999999
Q ss_pred EEEecCCCCcceeeecc---CCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCC
Q 010206 424 RVFGCSEGSAESTTLEA---SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN 500 (515)
Q Consensus 424 ~iw~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 500 (515)
+||++++++ ....+++ |....-.+...|+|-|+++...|+++.+++-. ..+...+..+|...|+.+.|.+|-+
T Consensus 621 rif~i~sgK-q~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~---sgEcvA~m~GHsE~VTG~kF~nDCk 696 (1080)
T KOG1408|consen 621 RIFDIESGK-QVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFV---SGECVAQMTGHSEAVTGVKFLNDCK 696 (1080)
T ss_pred EEEeccccc-eeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEec---cchhhhhhcCcchheeeeeecccch
Confidence 999999984 4466764 44556678899999999999999999992211 1123335567999999999999999
Q ss_pred EEEEE-cCCcEEEEeC
Q 010206 501 SIACA-ASNSLYMYYA 515 (515)
Q Consensus 501 ~la~~-~~~~~~i~~~ 515 (515)
.|.+. ++..|++|..
T Consensus 697 HlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 697 HLISVSGDGCIFVWKL 712 (1080)
T ss_pred hheeecCCceEEEEEC
Confidence 88855 5666999963
No 80
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=1.4e-27 Score=202.09 Aligned_cols=258 Identities=17% Similarity=0.205 Sum_probs=191.3
Q ss_pred ccCcCCeEEEEecC---CCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCC
Q 010206 231 HAHDYHINSISNNS---DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG 306 (515)
Q Consensus 231 ~~~~~~v~~~~~~~---~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg 306 (515)
.+|.++|.+++|-- ....|+++ .|.++++|..+.+....... ....+|...|-++...+++ ..+++|+.|.
T Consensus 141 ~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~----~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~ 215 (423)
T KOG0313|consen 141 VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKAL----KVCRGHKRSVDSVSVDSSG-TRFCSGSWDT 215 (423)
T ss_pred ecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHH----hHhcccccceeEEEecCCC-CeEEeecccc
Confidence 57888888777632 33357777 89999999998766543322 1335899999999999999 9999999999
Q ss_pred eEEEEecCccccc--cc-------ccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCC
Q 010206 307 SIRLIDMRQSALC--DT-------HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGP 376 (515)
Q Consensus 307 ~i~~wd~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~ 376 (515)
.|++|+..+...- .. ..+.-+......+...+.+|..+|.++.|++ ...+++++. .+|+.||+.+ ++.
T Consensus 216 ~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDlet-g~~ 293 (423)
T KOG0313|consen 216 MLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLET-GGL 293 (423)
T ss_pred eeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeec-ccc
Confidence 9999994332110 00 0000111112234557899999999999997 667777774 9999999998 777
Q ss_pred eeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCC--cceeeeccCCCceeeEEECCCC
Q 010206 377 VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS--AESTTLEASKNPMRRQVQTPSR 454 (515)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~--~~~~~~~~~~~~v~~~~~~~~~ 454 (515)
..++..... .+++..+|..++|++|+.|..+++||.+++. ...+++.+|.+-|.++.++|..
T Consensus 294 ~~~~~~~ks----------------l~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~ 357 (423)
T KOG0313|consen 294 KSTLTTNKS----------------LNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTN 357 (423)
T ss_pred eeeeecCcc----------------eeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCC
Confidence 766665443 2489999999999999999999999998764 3348899999999999999987
Q ss_pred Ce-eEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEc-CCcEEEEe
Q 010206 455 PS-RPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 514 (515)
Q Consensus 455 ~~-l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~-~~~~~i~~ 514 (515)
.+ |++|+.|+++++++...... ....+..|...|.++.|+. +..|++|+ ++.+.||.
T Consensus 358 ~~~~~S~S~D~t~klWDvRS~k~--plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 358 EFQLVSGSYDNTVKLWDVRSTKA--PLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFK 416 (423)
T ss_pred ceEEEEEecCCeEEEEEeccCCC--cceeeccCCceEEEEeccC-CceEEeccCcceEEEec
Confidence 65 79999999999944333221 2224456899999999965 56677666 66688875
No 81
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.1e-26 Score=181.51 Aligned_cols=307 Identities=18% Similarity=0.181 Sum_probs=224.4
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
+..+..|.+++|+|.|.+.|+|+...+.+|-....-... .+....+..|.......-..|.
T Consensus 29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~--------r~~hea~~~pp~v~~kr~khhk----------- 89 (350)
T KOG0641|consen 29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDL--------RHAHEAAKQPPSVLCKRNKHHK----------- 89 (350)
T ss_pred ecchhheeeEEecCCCceEEeccCCceEEEEccccccCc--------ccccccccCCCeEEeeeccccC-----------
Confidence 455678999999999999999999999888765432110 0111122223222222233444
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
+.|.|.+| ++.|+++++|++|++|++..+........ |.
T Consensus 90 -gsiyc~~w--s~~geliatgsndk~ik~l~fn~dt~~~~-------------------------------g~------- 128 (350)
T KOG0641|consen 90 -GSIYCTAW--SPCGELIATGSNDKTIKVLPFNADTCNAT-------------------------------GH------- 128 (350)
T ss_pred -ccEEEEEe--cCccCeEEecCCCceEEEEeccccccccc-------------------------------Cc-------
Confidence 99999999 56788999999999999876654321110 00
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC----CCEEEEe--CCCcEEEEeCCCC
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD----GETFISA--DDLRINLWNLEIS 265 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~s~--~d~~i~iwd~~~~ 265 (515)
+ .. +.-|.+.|..++|..+ +.+|+++ .|..|++-|-.++
T Consensus 129 --------------------------d--------le-~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g 173 (350)
T KOG0641|consen 129 --------------------------D--------LE-FNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG 173 (350)
T ss_pred --------------------------c--------ee-eeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC
Confidence 0 00 2467788999999543 5677776 5888888888766
Q ss_pred CcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccce
Q 010206 266 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 345 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 345 (515)
+... .+.+|.+-|.++ ++-++ -+|++|+.|.+|++||++-...+...-..+..... -++.|
T Consensus 174 ~~~~--------a~sghtghilal-yswn~-~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gl---------essav 234 (350)
T KOG0641|consen 174 QGFH--------ALSGHTGHILAL-YSWNG-AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGL---------ESSAV 234 (350)
T ss_pred Ccce--------eecCCcccEEEE-EEecC-cEEEccCCCceEEEEeeeccceeeeccCcccCCCc---------cccee
Confidence 6443 668899998877 34455 79999999999999999876554322222221110 12679
Q ss_pred eEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEE
Q 010206 346 SDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 424 (515)
Q Consensus 346 ~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~ 424 (515)
.+++..|.|++|++|.. ....+||++- +++++.+..|... |.++.|||...||.+++.|..|+
T Consensus 235 aav~vdpsgrll~sg~~dssc~lydirg-~r~iq~f~phsad---------------ir~vrfsp~a~yllt~syd~~ik 298 (350)
T KOG0641|consen 235 AAVAVDPSGRLLASGHADSSCMLYDIRG-GRMIQRFHPHSAD---------------IRCVRFSPGAHYLLTCSYDMKIK 298 (350)
T ss_pred EEEEECCCcceeeeccCCCceEEEEeeC-CceeeeeCCCccc---------------eeEEEeCCCceEEEEecccceEE
Confidence 99999999999999964 8999999994 8999999888765 45999999999999999999999
Q ss_pred EEecCCCC---cceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 425 VFGCSEGS---AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 425 iw~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+-|+...- ........|.+.+-.+.|+|..-.+++.+.|+++.+
T Consensus 299 ltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tl 345 (350)
T KOG0641|consen 299 LTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATL 345 (350)
T ss_pred EeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEE
Confidence 99997431 112455689999999999999999999999999988
No 82
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=1.2e-27 Score=210.38 Aligned_cols=298 Identities=15% Similarity=0.219 Sum_probs=208.4
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|.++++ .+.|.+|++|+.|.+|++||+......... +
T Consensus 168 k~Vsal~~--Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~-f-------------------------------------- 206 (641)
T KOG0772|consen 168 KIVSALAV--DPSGARFVSGSLDYTVKFWDFQGMDASMRS-F-------------------------------------- 206 (641)
T ss_pred eEEEEeee--cCCCceeeeccccceEEEEecccccccchh-h--------------------------------------
Confidence 77999999 777889999999999999998864311100 0
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
+.........|+++.|++.+..|++. .....+|+|-.. ....+.
T Consensus 207 ----------------------------------r~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG-~~~~e~ 251 (641)
T KOG0772|consen 207 ----------------------------------RQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDG-FEIVEF 251 (641)
T ss_pred ----------------------------------hccCcccccccceeeecCCCCeEEEEecCcceeEEccCC-ceeeee
Confidence 00012334678899999998888876 778888888653 222221
Q ss_pred -------ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccc
Q 010206 272 -------VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 344 (515)
Q Consensus 272 -------~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (515)
.++ ..-.+|...++|.+|+|.....|++++.||++|+||+.+.+.. ..++.... ..+..-+
T Consensus 252 ~KGDQYI~Dm--~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q---~qVik~k~-------~~g~Rv~ 319 (641)
T KOG0772|consen 252 SKGDQYIRDM--YNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ---LQVIKTKP-------AGGKRVP 319 (641)
T ss_pred eccchhhhhh--hccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh---eeEEeecc-------CCCcccC
Confidence 111 2457899999999999998789999999999999999876532 22332211 1233457
Q ss_pred eeEEEEccCCCEEEEEc-CCeEEEEEeeCCC-CCe-eeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCC
Q 010206 345 ISDIKFARNGRHILSRD-YMTLKLWDINMDS-GPV-ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 421 (515)
Q Consensus 345 i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg 421 (515)
++.++|+|||+++|+|. ||.|.+|+...-. .+. ..-..|... .+|+++.||+||++|++-+.|+
T Consensus 320 ~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g-------------~~Itsi~FS~dg~~LlSRg~D~ 386 (641)
T KOG0772|consen 320 VTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPG-------------QDITSISFSYDGNYLLSRGFDD 386 (641)
T ss_pred ceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCC-------------CceeEEEeccccchhhhccCCC
Confidence 99999999999999976 4999999975311 121 222333321 2367999999999999999999
Q ss_pred cEEEEecCCCCcceeeeccC--CCceeeEEECCCCCeeEeecCC------CeEEEecCCCCCccccCCccccccCCeeEE
Q 010206 422 LFRVFGCSEGSAESTTLEAS--KNPMRRQVQTPSRPSRPLGSLS------GVVRRVKGADNSALDANGNAFDFSMKLLHL 493 (515)
Q Consensus 422 ~i~iw~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~d------~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~ 493 (515)
++++||++..++.+.+..+- ..+-+.++|+|+.+++++|..- |.+.+++...+. ...+..-....|..+
T Consensus 387 tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d---~v~ki~i~~aSvv~~ 463 (641)
T KOG0772|consen 387 TLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD---TVYKIDISTASVVRC 463 (641)
T ss_pred ceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee---eEEEecCCCceEEEE
Confidence 99999999876655554433 3566789999999999998652 445553222211 111111126789999
Q ss_pred EEcCCCCEEEEEcCCc-EEEEe
Q 010206 494 AWHPSENSIACAASNS-LYMYY 514 (515)
Q Consensus 494 ~~s~~~~~la~~~~~~-~~i~~ 514 (515)
.|+|.-+.|.+++.|| +.+|+
T Consensus 464 ~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 464 LWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred eecchhhheeeecCCCceEEEE
Confidence 9999999888887665 66654
No 83
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.5e-27 Score=216.96 Aligned_cols=240 Identities=17% Similarity=0.344 Sum_probs=200.3
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeeccc-CCCcccccccccccc
Q 010206 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQS-HEPEFDYLKSLEIEE 113 (515)
Q Consensus 35 ~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~ 113 (515)
.+.|+++.|+++|.+||+|..+|.|.|||..+.+.. ..+.+ |. .
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~-----------------------~~~~~~h~------------~ 261 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT-----------------------RTLRGSHA------------S 261 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc-----------------------ccccCCcC------------c
Confidence 799999999999999999999999999998876643 33445 66 8
Q ss_pred eeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccC
Q 010206 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (515)
Q Consensus 114 ~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~ 193 (515)
.|-+++|. +..+.+|+.|+.|..+|++..+....
T Consensus 262 rvg~laW~----~~~lssGsr~~~I~~~dvR~~~~~~~------------------------------------------ 295 (484)
T KOG0305|consen 262 RVGSLAWN----SSVLSSGSRDGKILNHDVRISQHVVS------------------------------------------ 295 (484)
T ss_pred eeEEEecc----CceEEEecCCCcEEEEEEecchhhhh------------------------------------------
Confidence 89999994 44888999999999999987541000
Q ss_pred CCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccccee
Q 010206 194 SNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 272 (515)
Q Consensus 194 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 272 (515)
.+.+|...|..+.|++|+.+|++| .|+.+.|||.......+
T Consensus 296 -----------------------------------~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~--- 337 (484)
T KOG0305|consen 296 -----------------------------------TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKF--- 337 (484)
T ss_pred -----------------------------------hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccE---
Confidence 036899999999999999999998 89999999996555443
Q ss_pred cccCccccccCCceEEEEEecCCCcEEEEEec--CCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEE
Q 010206 273 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSS--KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 350 (515)
Q Consensus 273 ~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (515)
.+..|...|..++|+|-...+||+|+. |+.|++||..++..+.. .+. .+.|..+.|
T Consensus 338 -----~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~----vdt-------------gsQVcsL~W 395 (484)
T KOG0305|consen 338 -----TFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS----VDT-------------GSQVCSLIW 395 (484)
T ss_pred -----EEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc----ccc-------------CCceeeEEE
Confidence 567899999999999987789998764 99999999998876432 111 157999999
Q ss_pred ccCCCEEEEEc---CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 351 ARNGRHILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 351 s~~~~~l~s~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
++..+.|+++. ++.|.||+..+ .+++..+.+|... |..++++|||..+++|+.|.++++|+
T Consensus 396 sk~~kEi~sthG~s~n~i~lw~~ps-~~~~~~l~gH~~R---------------Vl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 396 SKKYKELLSTHGYSENQITLWKYPS-MKLVAELLGHTSR---------------VLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred cCCCCEEEEecCCCCCcEEEEeccc-cceeeeecCCcce---------------eEEEEECCCCCEEEEecccCcEEecc
Confidence 99988888742 38999999987 8888999999866 55899999999999999999999999
Q ss_pred cCCC
Q 010206 428 CSEG 431 (515)
Q Consensus 428 ~~~~ 431 (515)
+-..
T Consensus 460 ~f~~ 463 (484)
T KOG0305|consen 460 LFDE 463 (484)
T ss_pred ccCC
Confidence 8754
No 84
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=3.5e-27 Score=190.55 Aligned_cols=288 Identities=15% Similarity=0.182 Sum_probs=214.4
Q ss_pred ecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcC
Q 010206 95 EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (515)
Q Consensus 95 ~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 174 (515)
.+++|+ .+++.|.| +.+|.+|++++.|.+..+|--.+|+..-.
T Consensus 5 ~l~GHE------------RplTqiKy--N~eGDLlFscaKD~~~~vw~s~nGerlGt----------------------- 47 (327)
T KOG0643|consen 5 LLQGHE------------RPLTQIKY--NREGDLLFSCAKDSTPTVWYSLNGERLGT----------------------- 47 (327)
T ss_pred ccccCc------------cccceEEe--cCCCcEEEEecCCCCceEEEecCCceeee-----------------------
Confidence 367888 89999999 56788999999999999997666542211
Q ss_pred CCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-C
Q 010206 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D 253 (515)
Q Consensus 175 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~ 253 (515)
..+|.+.|+|+..+.+.+.+++| .
T Consensus 48 -------------------------------------------------------y~GHtGavW~~Did~~s~~liTGSA 72 (327)
T KOG0643|consen 48 -------------------------------------------------------YDGHTGAVWCCDIDWDSKHLITGSA 72 (327)
T ss_pred -------------------------------------------------------ecCCCceEEEEEecCCcceeeeccc
Confidence 36899999999999999999999 8
Q ss_pred CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEec-----CCeEEEEecCcccccccccceeee
Q 010206 254 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-----KGSIRLIDMRQSALCDTHSKLFEE 328 (515)
Q Consensus 254 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~-----dg~i~~wd~~~~~~~~~~~~~~~~ 328 (515)
|.++++||++++++.... ....+|..+.|+++| ++++.... .+.|.++|++.......
T Consensus 73 D~t~kLWDv~tGk~la~~---------k~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~------- 135 (327)
T KOG0643|consen 73 DQTAKLWDVETGKQLATW---------KTNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDID------- 135 (327)
T ss_pred cceeEEEEcCCCcEEEEe---------ecCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhhc-------
Confidence 999999999999876532 246789999999999 66665544 46799999985431100
Q ss_pred ccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEE
Q 010206 329 QEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 407 (515)
Q Consensus 329 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 407 (515)
...+...+..+.+.++.+.|+|-+++|++|.+ |.|.+||++++.+.+.....|... |+.+++
T Consensus 136 --s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~---------------Ind~q~ 198 (327)
T KOG0643|consen 136 --SEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSK---------------INDLQF 198 (327)
T ss_pred --ccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccc---------------cccccc
Confidence 00011113334478999999999999999976 999999999855666666666654 458999
Q ss_pred cCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE-----ecCCCCC------c
Q 010206 408 SGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR-----VKGADNS------A 476 (515)
Q Consensus 408 s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l-----~~~~~~~------~ 476 (515)
++|..+++|+|.|.+-++||+.+-. .++++ ....|+++.+++|-...++.|+.-..--+ ..|.-.. -
T Consensus 199 s~d~T~FiT~s~Dttakl~D~~tl~-v~Kty-~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~ 276 (327)
T KOG0643|consen 199 SRDRTYFITGSKDTTAKLVDVRTLE-VLKTY-TTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIF 276 (327)
T ss_pred cCCcceEEecccCccceeeecccee-eEEEe-eecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHH
Confidence 9999999999999999999998762 32333 34679999999998777666654322222 1111000 0
Q ss_pred cccCCccccccCCeeEEEEcCCCCEEEEEcCCcE
Q 010206 477 LDANGNAFDFSMKLLHLAWHPSENSIACAASNSL 510 (515)
Q Consensus 477 ~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~ 510 (515)
.+..+...+|=++|++++|||||+..++|+.+|.
T Consensus 277 eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~ 310 (327)
T KOG0643|consen 277 EEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGY 310 (327)
T ss_pred HHHhccccccccCcceeEECCCCcccccCCCCce
Confidence 0122233468899999999999999999999884
No 85
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=1.4e-25 Score=196.96 Aligned_cols=375 Identities=12% Similarity=0.168 Sum_probs=268.0
Q ss_pred cccccceEEEEECCCC-CeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 32 VQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g-~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..-.+.|..+.|+|.+ +++++. ..|.+..|+..++... +....|..++.
T Consensus 197 k~sne~v~~a~FHPtd~nliit~-Gk~H~~Fw~~~~~~l~--------------------k~~~~fek~ek--------- 246 (626)
T KOG2106|consen 197 KTSNEVVFLATFHPTDPNLIITC-GKGHLYFWTLRGGSLV--------------------KRQGIFEKREK--------- 246 (626)
T ss_pred eeccceEEEEEeccCCCcEEEEe-CCceEEEEEccCCceE--------------------EEeeccccccc---------
Confidence 3456788999999955 455555 4668999998877542 12233455441
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
.-|.+++|.+ ++ -.++|..+|.|.||+..+.+..+....+ .+.|+ ++....+|..
T Consensus 247 --k~Vl~v~F~e--ng-dviTgDS~G~i~Iw~~~~~~~~k~~~aH--------~ggv~-------~L~~lr~Gtl----- 301 (626)
T KOG2106|consen 247 --KFVLCVTFLE--NG-DVITGDSGGNILIWSKGTNRISKQVHAH--------DGGVF-------SLCMLRDGTL----- 301 (626)
T ss_pred --eEEEEEEEcC--CC-CEEeecCCceEEEEeCCCceEEeEeeec--------CCceE-------EEEEecCccE-----
Confidence 5699999954 43 4899999999999999887765554422 46666 7888888887
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccc---c----------------cccee------------eeeeccCcCCeEE
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETN---L----------------VAGCR------------RIYAHAHDYHINS 239 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~---~----------------~~~~~------------~~~~~~~~~~v~~ 239 (515)
++|+.|..|..||-.+...... . .+..+ .....+|......
T Consensus 302 --------lSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwg 373 (626)
T KOG2106|consen 302 --------LSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWG 373 (626)
T ss_pred --------eecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceee
Confidence 4599999999998211111000 0 00000 0112577888899
Q ss_pred EEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccc
Q 010206 240 ISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL 318 (515)
Q Consensus 240 ~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~ 318 (515)
++.+|+..+|+++ .|+.+++|+ ..+.... .....+..|+.|+|.| .++.|...|...+.|.++..+
T Consensus 374 la~hps~~q~~T~gqdk~v~lW~--~~k~~wt---------~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~l 440 (626)
T KOG2106|consen 374 LATHPSKNQLLTCGQDKHVRLWN--DHKLEWT---------KIIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDL 440 (626)
T ss_pred EEcCCChhheeeccCcceEEEcc--CCceeEE---------EEecCceeEeeccCcc--eEEEeeccceEEEEeccccee
Confidence 9999999999998 899999999 2333222 1136778999999997 899999999999999988654
Q ss_pred cccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCC
Q 010206 319 CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEND 397 (515)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (515)
+.. ..-..++++++|+|+|.+||.|+. +.|+||.+..++........+...
T Consensus 441 v~~-----------------~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs----------- 492 (626)
T KOG2106|consen 441 VTI-----------------HTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGS----------- 492 (626)
T ss_pred EEE-----------------EecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCc-----------
Confidence 321 111368999999999999999986 999999998767666666555441
Q ss_pred CccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeee------------------ccCCCceeeEEECCCCCeeEe
Q 010206 398 SIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL------------------EASKNPMRRQVQTPSRPSRPL 459 (515)
Q Consensus 398 ~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~------------------~~~~~~v~~~~~~~~~~~l~s 459 (515)
.++.+.||+|+++|.+-+.|-.|..|..... +..... ..+...+++++.+..++.+|+
T Consensus 493 ---~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~-~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~ 568 (626)
T KOG2106|consen 493 ---PITHLDWSSDSQFLVSNSGDYEILYWKPSEC-KQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLAS 568 (626)
T ss_pred ---eeEEeeecCCCceEEeccCceEEEEEccccC-cccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhc
Confidence 1668999999999999999999999944322 221111 145667788888899999999
Q ss_pred ecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEE-EEcCCcEEEEe
Q 010206 460 GSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIA-CAASNSLYMYY 514 (515)
Q Consensus 460 ~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la-~~~~~~~~i~~ 514 (515)
|...|.|+|++---........+..+|.+.|.+++|..+...+. ++.++.++.|.
T Consensus 569 gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 569 GDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWR 624 (626)
T ss_pred cccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEE
Confidence 99999999933222222223334557899999999998777666 55567788885
No 86
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.9e-26 Score=189.46 Aligned_cols=277 Identities=18% Similarity=0.225 Sum_probs=206.6
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|+++.| +.+|.++++++.|.++++||..+++..+...
T Consensus 15 ~~i~sl~f--s~~G~~litss~dDsl~LYd~~~g~~~~ti~--------------------------------------- 53 (311)
T KOG1446|consen 15 GKINSLDF--SDDGLLLITSSEDDSLRLYDSLSGKQVKTIN--------------------------------------- 53 (311)
T ss_pred CceeEEEe--cCCCCEEEEecCCCeEEEEEcCCCceeeEee---------------------------------------
Confidence 67999999 6678899999999999999999987655422
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEE-e--CCCcEEEEeCCCCCccc
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS-A--DDLRINLWNLEISNQSF 269 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~--~d~~i~iwd~~~~~~~~ 269 (515)
.+...+..++|......++. . .|.+|+..++.+.+..
T Consensus 54 ---------------------------------------skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkyl- 93 (311)
T KOG1446|consen 54 ---------------------------------------SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYL- 93 (311)
T ss_pred ---------------------------------------cccccccEEEEecCCceEEEccCCCCCceEEEEeecCceE-
Confidence 22234555666554444444 3 4999999999977654
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
+.+.+|...|.+++.+|-+ ..+++++.|++|++||+|..+... .+.. ..-..++
T Consensus 94 -------RYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg----~l~~--------------~~~pi~A 147 (311)
T KOG1446|consen 94 -------RYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQG----LLNL--------------SGRPIAA 147 (311)
T ss_pred -------EEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCce----EEec--------------CCCccee
Confidence 2789999999999999998 899999999999999999654321 1111 2334578
Q ss_pred EccCCCEEEEEcC-CeEEEEEeeCC-CCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 350 FARNGRHILSRDY-MTLKLWDINMD-SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 350 ~s~~~~~l~s~~~-~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
|.|.|-++|++.. ..|++||+++- ..|..++........ +.+.+.|||||++|+.++..+.+++.|
T Consensus 148 fDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~------------ew~~l~FS~dGK~iLlsT~~s~~~~lD 215 (311)
T KOG1446|consen 148 FDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEA------------EWTDLEFSPDGKSILLSTNASFIYLLD 215 (311)
T ss_pred ECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCcc------------ceeeeEEcCCCCEEEEEeCCCcEEEEE
Confidence 9999999999887 69999999974 456666654422111 134899999999999999999999999
Q ss_pred cCCCCcceeeeccCCCce---eeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCcccc-ccCCeeEEEEcCCCCEEE
Q 010206 428 CSEGSAESTTLEASKNPM---RRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFD-FSMKLLHLAWHPSENSIA 503 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~la 503 (515)
.-+| .+..++..+...- -...|+|+++++++|+.||+|.++.. ..........+ +...+.++.|+|.-.++|
T Consensus 216 Af~G-~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~---~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~ 291 (311)
T KOG1446|consen 216 AFDG-TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNL---ETGKKVAVLRGPNGGPVSCVRFNPRYAMFV 291 (311)
T ss_pred ccCC-cEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEc---CCCcEeeEecCCCCCCccccccCCceeeee
Confidence 9988 4667777665433 57788999999999999999999222 11111111222 467889999999888888
Q ss_pred EEcCCcEEEE
Q 010206 504 CAASNSLYMY 513 (515)
Q Consensus 504 ~~~~~~~~i~ 513 (515)
+++. .+.+|
T Consensus 292 sa~s-~l~fw 300 (311)
T KOG1446|consen 292 SASS-NLVFW 300 (311)
T ss_pred ecCc-eEEEE
Confidence 7765 46666
No 87
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.2e-27 Score=195.39 Aligned_cols=315 Identities=17% Similarity=0.228 Sum_probs=231.9
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
+..+|.+.|..++.......+.+++.|.+.+||.++++. ++..+.+|.
T Consensus 143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~-----------------------CL~~Y~GH~--------- 190 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA-----------------------CLATYTGHT--------- 190 (481)
T ss_pred hhcccccceeeehhhcCCcceeecccccceeEEeecccc-----------------------ceeeecccc---------
Confidence 456899999999998888899999999999999999887 557899999
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEE----eeccCCcccCCCCCCccCCCCcCCCceeecCCCc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKV----FDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 185 (515)
+.|++|.|+++ +.++++++.|++-.||...-.-.... ........ . ..+ |...
T Consensus 191 ---GSVNsikfh~s--~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE-------~----------e~s-De~~ 247 (481)
T KOG0300|consen 191 ---GSVNSIKFHNS--GLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEE-------E----------EHS-DEHN 247 (481)
T ss_pred ---cceeeEEeccc--cceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhh-------h----------hcc-cccc
Confidence 99999999765 55999999999999998432110000 00000000 0 000 0000
Q ss_pred cccccccCCCCCCCCC-CCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCC
Q 010206 186 GERNFGCASNDSSFPP-GGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLE 263 (515)
Q Consensus 186 l~~~~~~~~~~~~~~~-~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~ 263 (515)
.+.--.- +...+|++ +... +.+|...|.+..|...++.++++ .|.+..+||++
T Consensus 248 ---------~d~d~~~~sD~~tiRv---------------Pl~~-ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVE 302 (481)
T KOG0300|consen 248 ---------RDTDSSEKSDGHTIRV---------------PLMR-LTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVE 302 (481)
T ss_pred ---------cccccccccCCceeee---------------eeee-eeccccceEehhhhcCcceeeeeeccccceeeeec
Confidence 0000000 11113332 2222 47899999999999999999999 89999999999
Q ss_pred CCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccc
Q 010206 264 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 343 (515)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (515)
++.... .+.+|....+.++-+|+. +++++.+.|.+.++||++..- . ...+|.||..
T Consensus 303 tge~v~--------~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFReaI--~-------------sV~VFQGHtd 358 (481)
T KOG0300|consen 303 TGEVVN--------ILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREAI--Q-------------SVAVFQGHTD 358 (481)
T ss_pred cCceec--------cccCcchhccccccCCcc-eEEEEeccCceeEeccchhhc--c-------------eeeeeccccc
Confidence 887553 678999999999999997 999999999999999998431 1 1235788999
Q ss_pred ceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCc
Q 010206 344 SISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 422 (515)
Q Consensus 344 ~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~ 422 (515)
.|+++.|..+. .+++|+| .+|++||+++-..++.++..... +..++.+..+..|+.--++..
T Consensus 359 tVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS~----------------~NRvavs~g~~iIAiPhDNRq 421 (481)
T KOG0300|consen 359 TVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDSP----------------ANRVAVSKGHPIIAIPHDNRQ 421 (481)
T ss_pred ceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeecCCc----------------cceeEeecCCceEEeccCCce
Confidence 99999999654 5677766 99999999976677887765443 237888888889999999999
Q ss_pred EEEEecCCCCccee-----eeccCCCceeeEEECCCCC--eeEeecCCCeEE
Q 010206 423 FRVFGCSEGSAEST-----TLEASKNPMRRQVQTPSRP--SRPLGSLSGVVR 467 (515)
Q Consensus 423 i~iw~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~v~ 467 (515)
|++||++.. .+. .-++|..-|.+.+|..+-+ -|++++.|..+.
T Consensus 422 vRlfDlnG~--RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~ 471 (481)
T KOG0300|consen 422 VRLFDLNGN--RLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVA 471 (481)
T ss_pred EEEEecCCC--ccccCCcccccccceeeeeeeccccCcccccccccccceee
Confidence 999999843 332 3458999999999975544 367777776654
No 88
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=5.7e-26 Score=215.65 Aligned_cols=241 Identities=13% Similarity=0.224 Sum_probs=171.0
Q ss_pred eccCcCCeEEEEecCC-CCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCe
Q 010206 230 AHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 307 (515)
Q Consensus 230 ~~~~~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~ 307 (515)
+.+|...|.+++|+|+ +.+|++| .|++|++||+.+..............+.+|...|.+++|+|++..+|++++.|+.
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dgt 149 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSF 149 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCe
Confidence 4789999999999997 7899998 8999999999764321110000012457899999999999998456789999999
Q ss_pred EEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccc
Q 010206 308 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHL 386 (515)
Q Consensus 308 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~ 386 (515)
|++||+++++... .+ .|...|.+++|+|+|.+|++++ ++.|+|||+++ ++.+..+.+|.+.
T Consensus 150 IrIWDl~tg~~~~----~i-------------~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rs-g~~i~tl~gH~g~ 211 (568)
T PTZ00420 150 VNIWDIENEKRAF----QI-------------NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRK-QEIASSFHIHDGG 211 (568)
T ss_pred EEEEECCCCcEEE----EE-------------ecCCcEEEEEECCCCCEEEEEecCCEEEEEECCC-CcEEEEEecccCC
Confidence 9999999876421 11 1235799999999999999876 59999999997 7888888888754
Q ss_pred cccccccccCCCccceeeEEEcCCCCEEEEecCCC----cEEEEecCCCCcceeee--ccCCCceeeEEECCCCCeeEee
Q 010206 387 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN----LFRVFGCSEGSAESTTL--EASKNPMRRQVQTPSRPSRPLG 460 (515)
Q Consensus 387 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg----~i~iw~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~ 460 (515)
+... .++...|++++++|++++.|+ .|+|||+++....+..+ ..+...+......+++.++++|
T Consensus 212 ~~s~----------~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsG 281 (568)
T PTZ00420 212 KNTK----------NIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIG 281 (568)
T ss_pred ceeE----------EEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEE
Confidence 3211 122345679999999887664 79999999644444333 3333444444556679999999
Q ss_pred cCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCC
Q 010206 461 SLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN 500 (515)
Q Consensus 461 ~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 500 (515)
+.|+.|++++-.... ........+..++..++|.|+..
T Consensus 282 kGD~tIr~~e~~~~~--~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 282 KGDGNCRYYQHSLGS--IRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred ECCCeEEEEEccCCc--EEeecccccCCCccceEEccccc
Confidence 999999993321111 01111223456788999999754
No 89
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.3e-27 Score=215.95 Aligned_cols=296 Identities=19% Similarity=0.303 Sum_probs=222.3
Q ss_pred cccccceE---EEEECC-CCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccc
Q 010206 32 VQEVDIIS---AIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (515)
Q Consensus 32 ~~h~~~v~---~v~~s~-~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (515)
..|...|. ++..+. .+++|.+|++||.|++|++...... |+-.+...++.|.
T Consensus 18 ~qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~-----------------~s~~~~asme~Hs------- 73 (735)
T KOG0308|consen 18 KQNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNE-----------------PSTPYIASMEHHS------- 73 (735)
T ss_pred hhccccccchhhccccCCCCceEEecCCCceEEEeccccccCC-----------------cccchhhhhhhhH-------
Confidence 35667777 566654 6678999999999999998654421 2223566788888
Q ss_pred cccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccc
Q 010206 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (515)
Q Consensus 108 ~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~ 187 (515)
..|+.+..+ .+++.|+++|.|-+|++|+...+.. .
T Consensus 74 -----DWVNDiiL~--~~~~tlIS~SsDtTVK~W~~~~~~~--~------------------------------------ 108 (735)
T KOG0308|consen 74 -----DWVNDIILC--GNGKTLISASSDTTVKVWNAHKDNT--F------------------------------------ 108 (735)
T ss_pred -----hHHhhHHhh--cCCCceEEecCCceEEEeecccCcc--h------------------------------------
Confidence 899999995 4566899999999999999875420 0
Q ss_pred cccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEe-cCCCCEEEEe-CCCcEEEEeCCCC
Q 010206 188 RNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISN-NSDGETFISA-DDLRINLWNLEIS 265 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~s~-~d~~i~iwd~~~~ 265 (515)
|..+ +..|...|.|++. .++..++++| -|+.|.+||++++
T Consensus 109 -------------------------------------c~st-ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~ 150 (735)
T KOG0308|consen 109 -------------------------------------CMST-IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTG 150 (735)
T ss_pred -------------------------------------hHhh-hhcccchheeeeecccCceeEEecCCCccEEEEEccCc
Confidence 0001 4679999999999 7788888888 6999999999976
Q ss_pred Cc--ccceecccCcccc-ccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccc
Q 010206 266 NQ--SFNIVDVKPANME-DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 342 (515)
Q Consensus 266 ~~--~~~~~~~~~~~~~-~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (515)
.. ....-.+....+. ++...|++++.++++ ..|++|+..+.+++||.++.+.+.+ +.||+
T Consensus 151 ~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~kimk----------------LrGHT 213 (735)
T KOG0308|consen 151 TATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKKIMK----------------LRGHT 213 (735)
T ss_pred chhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEeccccccceee----------------eeccc
Confidence 32 1111111112333 789999999999999 8999999999999999999875432 67899
Q ss_pred cceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCC
Q 010206 343 ASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 421 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg 421 (515)
..|..+..++||..+++++ ||+|++||+.. .+++.++..|... |+++..+|+=..+++|+.||
T Consensus 214 dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgq-QrCl~T~~vH~e~---------------VWaL~~~~sf~~vYsG~rd~ 277 (735)
T KOG0308|consen 214 DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQ-QRCLATYIVHKEG---------------VWALQSSPSFTHVYSGGRDG 277 (735)
T ss_pred cceEEEEEcCCCCeEeecCCCceEEeeeccc-cceeeeEEeccCc---------------eEEEeeCCCcceEEecCCCC
Confidence 9999999999999999975 59999999995 8999999999865 67899999999999999999
Q ss_pred cEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 422 LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 422 ~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.|..=|+.+.... ..+-....|+..+...-...-+-+++.|+.|+-
T Consensus 278 ~i~~Tdl~n~~~~-tlick~daPv~~l~~~~~~~~~WvtTtds~I~r 323 (735)
T KOG0308|consen 278 NIYRTDLRNPAKS-TLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKR 323 (735)
T ss_pred cEEecccCCchhh-eEeecCCCchhhhhhccccCCceeeecccccee
Confidence 9999999875222 222233445555555433333345555666654
No 90
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=3.3e-26 Score=234.52 Aligned_cols=259 Identities=14% Similarity=0.227 Sum_probs=191.0
Q ss_pred cccccceEEEEECC-CCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 32 VQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 32 ~~h~~~v~~v~~s~-~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+...|.+++|+| ++.+||+++.||.|+|||+.+++ ....+.+|.
T Consensus 529 ~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~-----------------------~~~~~~~H~---------- 575 (793)
T PLN00181 529 LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ-----------------------LVTEMKEHE---------- 575 (793)
T ss_pred ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe-----------------------EEEEecCCC----------
Confidence 44567899999987 57899999999999999987665 335677887
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|++++|+| .++.+|++++.|++|++||+.++......
T Consensus 576 --~~V~~l~~~p-~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~-------------------------------------- 614 (793)
T PLN00181 576 --KRVWSIDYSS-ADPTLLASGSDDGSVKLWSINQGVSIGTI-------------------------------------- 614 (793)
T ss_pred --CCEEEEEEcC-CCCCEEEEEcCCCEEEEEECCCCcEEEEE--------------------------------------
Confidence 8899999965 24569999999999999999876432211
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEec-CCCCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNN-SDGETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
.. ...|.++.|+ +++..|++| .|+.|++||++..+..
T Consensus 615 ----------------------------------------~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~ 653 (793)
T PLN00181 615 ----------------------------------------KT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLP 653 (793)
T ss_pred ----------------------------------------ec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 11 2457788884 578999998 8999999999865432
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
.. .+.+|...|.++.|. ++ ..|++++.|+.|++||++....... ......+.+|...+.++
T Consensus 654 ~~-------~~~~h~~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~~~----------~~~l~~~~gh~~~i~~v 714 (793)
T PLN00181 654 LC-------TMIGHSKTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISGIN----------ETPLHSFMGHTNVKNFV 714 (793)
T ss_pred ce-------EecCCCCCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCccccC----------CcceEEEcCCCCCeeEE
Confidence 21 456799999999997 45 6899999999999999975421000 01122356778889999
Q ss_pred EEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecc-ccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEE
Q 010206 349 KFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEH-LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 426 (515)
Q Consensus 349 ~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw 426 (515)
.|+|++.+|++|+. +.|++|+... ..++..+..... ..... .....-..|.+++|+|++.+|++|+.||.|+||
T Consensus 715 ~~s~~~~~lasgs~D~~v~iw~~~~-~~~~~s~~~~~~~~~~~~---~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~ 790 (793)
T PLN00181 715 GLSVSDGYIATGSETNEVFVYHKAF-PMPVLSYKFKTIDPVSGL---EVDDASQFISSVCWRGQSSTLVAANSTGNIKIL 790 (793)
T ss_pred EEcCCCCEEEEEeCCCEEEEEECCC-CCceEEEecccCCccccc---ccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEE
Confidence 99999999999875 9999999875 444433321110 00000 001111236699999999999999999999999
Q ss_pred ec
Q 010206 427 GC 428 (515)
Q Consensus 427 ~~ 428 (515)
++
T Consensus 791 ~~ 792 (793)
T PLN00181 791 EM 792 (793)
T ss_pred ec
Confidence 96
No 91
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=5.2e-26 Score=215.91 Aligned_cols=258 Identities=18% Similarity=0.250 Sum_probs=180.0
Q ss_pred ecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEEEeecCCCcEEEee
Q 010206 53 GDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLS 132 (515)
Q Consensus 53 g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~ 132 (515)
|+.++.|++|+..... ....+.+|. ..|.+++|+|.. +.+|++|
T Consensus 50 GG~~gvI~L~~~~r~~-----------------------~v~~L~gH~------------~~V~~lafsP~~-~~lLASg 93 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP-----------------------PVIKLKGHT------------SSILDLQFNPCF-SEILASG 93 (568)
T ss_pred CCceeEEEeeecCCCc-----------------------eEEEEcCCC------------CCEEEEEEcCCC-CCEEEEE
Confidence 5567788888865432 345678888 889999997642 4699999
Q ss_pred eCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeee
Q 010206 133 TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVV 212 (515)
Q Consensus 133 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~ 212 (515)
+.|++|++||+.++..... .
T Consensus 94 S~DgtIrIWDi~t~~~~~~-~----------------------------------------------------------- 113 (568)
T PTZ00420 94 SEDLTIRVWEIPHNDESVK-E----------------------------------------------------------- 113 (568)
T ss_pred eCCCeEEEEECCCCCcccc-c-----------------------------------------------------------
Confidence 9999999999976421000 0
Q ss_pred eecccccccccceeeeeeccCcCCeEEEEecCCCCEE-EEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEE
Q 010206 213 VVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF-ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAE 290 (515)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 290 (515)
+ ..+... +.+|...|.+++|+|++..+ +++ .|++|++||+++++... .+. |...|.+++
T Consensus 114 -i--------~~p~~~-L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~--------~i~-~~~~V~Sls 174 (568)
T PTZ00420 114 -I--------KDPQCI-LKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAF--------QIN-MPKKLSSLK 174 (568)
T ss_pred -c--------ccceEE-eecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEE--------EEe-cCCcEEEEE
Confidence 0 000001 36788999999999998765 566 79999999999776443 222 457799999
Q ss_pred EecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccce-----eEEEEccCCCEEEEEc-C--
Q 010206 291 FHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI-----SDIKFARNGRHILSRD-Y-- 362 (515)
Q Consensus 291 ~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~~~s~~~~~l~s~~-~-- 362 (515)
|+|+| .+|++++.|+.|++||+++++... . +.+|.+.+ ....|++++.+|++++ +
T Consensus 175 wspdG-~lLat~s~D~~IrIwD~Rsg~~i~----t------------l~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~ 237 (568)
T PTZ00420 175 WNIKG-NLLSGTCVGKHMHIIDPRKQEIAS----S------------FHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKN 237 (568)
T ss_pred ECCCC-CEEEEEecCCEEEEEECCCCcEEE----E------------EecccCCceeEEEEeeeEcCCCCEEEEEEcCCC
Confidence 99999 899999999999999999886532 2 33444433 3334568888888743 3
Q ss_pred --CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeecc
Q 010206 363 --MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA 440 (515)
Q Consensus 363 --~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~ 440 (515)
+.|+|||++...+++..+..+..... ++.....++|.++++|+.|+.|++|++..+......--.
T Consensus 238 ~~R~VkLWDlr~~~~pl~~~~ld~~~~~-------------L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~ 304 (568)
T PTZ00420 238 NMREMKLWDLKNTTSALVTMSIDNASAP-------------LIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK 304 (568)
T ss_pred CccEEEEEECCCCCCceEEEEecCCccc-------------eEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccc
Confidence 37999999965667766644432210 112233456889999999999999999866322222223
Q ss_pred CCCceeeEEECCCCC
Q 010206 441 SKNPMRRQVQTPSRP 455 (515)
Q Consensus 441 ~~~~v~~~~~~~~~~ 455 (515)
+..+...+++.|...
T Consensus 305 s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 305 SCSPFRSFGFLPKQI 319 (568)
T ss_pred cCCCccceEEccccc
Confidence 567888999998754
No 92
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.9e-27 Score=217.90 Aligned_cols=298 Identities=15% Similarity=0.161 Sum_probs=196.0
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcc--cCCCCCCccCCCCcCCCceeec---CCCc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPE--KAAGNGPIFGSHVSAIPKSYMA---NGGC 185 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~---~g~~ 185 (515)
|.+.|.++.| +++|+|||+|+.|+.|+||.+...+............ ...+.+.+. .+..++ .++.
T Consensus 266 h~gaIw~mKF--S~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~-------p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 266 HKGAIWAMKF--SHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIE-------PSTSSEEKISSRT 336 (712)
T ss_pred cCCcEEEEEe--CCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccC-------ccccccccccccc
Confidence 4499999999 6789999999999999999998754422211111000 000000000 000000 0000
Q ss_pred cccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCC
Q 010206 186 GERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEIS 265 (515)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~ 265 (515)
. ..-.+.....+.+.+ .-.....++... +.+|.+.|.++.|+.++-+|-++-|.+|+||++...
T Consensus 337 s----------~~~~~~~s~~~~~p~-----~~f~f~ekP~~e-f~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~ 400 (712)
T KOG0283|consen 337 S----------SSRKGSQSPCVLLPL-----KAFVFSEKPFCE-FKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRK 400 (712)
T ss_pred c----------ccccccCCccccCCC-----ccccccccchhh-hhccchhheecccccCCeeEeccccccEEeecCCCc
Confidence 0 000111111111111 111122234444 389999999999998874444448999999999976
Q ss_pred CcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccce
Q 010206 266 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 345 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 345 (515)
+.+ ..-.|.+.|+||+|+|.+.++|++|+-|+.+|||++...+... |. ....-|
T Consensus 401 ~CL---------~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~-----W~------------Dl~~lI 454 (712)
T KOG0283|consen 401 ECL---------KVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVD-----WN------------DLRDLI 454 (712)
T ss_pred cee---------eEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEe-----eh------------hhhhhh
Confidence 655 3345999999999999777999999999999999998766432 11 122579
Q ss_pred eEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCC-CEEEEecCCCcE
Q 010206 346 SDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLF 423 (515)
Q Consensus 346 ~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~s~dg~i 423 (515)
++++|.|||++.+.|+. |.+++|+... .+....+..+....... .-..|+.+.|.|.. ..|+..++|..|
T Consensus 455 TAvcy~PdGk~avIGt~~G~C~fY~t~~-lk~~~~~~I~~~~~Kk~-------~~~rITG~Q~~p~~~~~vLVTSnDSrI 526 (712)
T KOG0283|consen 455 TAVCYSPDGKGAVIGTFNGYCRFYDTEG-LKLVSDFHIRLHNKKKK-------QGKRITGLQFFPGDPDEVLVTSNDSRI 526 (712)
T ss_pred eeEEeccCCceEEEEEeccEEEEEEccC-CeEEEeeeEeeccCccc-------cCceeeeeEecCCCCCeEEEecCCCce
Confidence 99999999999999997 9999999984 55555444333211100 00136788888643 346677899999
Q ss_pred EEEecCCCCcceeeeccCCCc--eeeEEECCCCCeeEeecCCCeEEE
Q 010206 424 RVFGCSEGSAESTTLEASKNP--MRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 424 ~iw~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+|||.++. .++..+++..+. -....|+.+|++++++++|..|++
T Consensus 527 RI~d~~~~-~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYi 572 (712)
T KOG0283|consen 527 RIYDGRDK-DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYI 572 (712)
T ss_pred EEEeccch-hhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEE
Confidence 99999765 566788876543 235577889999999999999999
No 93
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=7.5e-27 Score=202.69 Aligned_cols=270 Identities=16% Similarity=0.260 Sum_probs=194.8
Q ss_pred ccccccceEEEEECCCC-CeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 31 EVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g-~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
.+.|.+.|+.+.+-|.. ..+|+++..+.|.|||.......... ..+++....+.+|+
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~-------------~~~~~Pdl~L~gH~--------- 177 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA-------------SGECRPDLRLKGHE--------- 177 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc-------------cccCCCceEEEeec---------
Confidence 36799999999999954 57777888999999998765432100 00223334577787
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..-.+++|++...+ .|++++.|++|++||+...... ++.
T Consensus 178 ---~eg~glsWn~~~~g-~Lls~~~d~~i~lwdi~~~~~~---------------------------------~~~---- 216 (422)
T KOG0264|consen 178 ---KEGYGLSWNRQQEG-TLLSGSDDHTICLWDINAESKE---------------------------------DKV---- 216 (422)
T ss_pred ---ccccccccccccce-eEeeccCCCcEEEEeccccccC---------------------------------Ccc----
Confidence 44677999876665 8999999999999999764311 000
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCC-EEEEe-CCCcEEEEeCCCCCc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~ 267 (515)
...+....+|...|..++|++... +|+++ +|+.+.|||+++...
T Consensus 217 ----------------------------------~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~ 262 (422)
T KOG0264|consen 217 ----------------------------------VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS 262 (422)
T ss_pred ----------------------------------ccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC
Confidence 001122479999999999999654 45555 899999999996311
Q ss_pred ccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 347 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (515)
.. .....+|.+.|.|++|+|-+..+||+|+.|++|++||+|+.... ...+.+|...|.+
T Consensus 263 ~~------~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~---------------lh~~e~H~dev~~ 321 (422)
T KOG0264|consen 263 KP------SHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKP---------------LHTFEGHEDEVFQ 321 (422)
T ss_pred CC------cccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccC---------------ceeccCCCcceEE
Confidence 11 12567899999999999987789999999999999999987542 2336778899999
Q ss_pred EEEccCCC-EEEE-EcCCeEEEEEeeCCCC----------CeeeEeeeccccccccccccCCCccceeeEEEcCCCCE-E
Q 010206 348 IKFARNGR-HILS-RDYMTLKLWDINMDSG----------PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR-V 414 (515)
Q Consensus 348 ~~~s~~~~-~l~s-~~~~~i~iwd~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l 414 (515)
|.|||... .|++ |.|+.+.|||+..-++ +...+..|.+... .|..+.|+|...+ |
T Consensus 322 V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~------------kV~DfsWnp~ePW~I 389 (422)
T KOG0264|consen 322 VEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA------------KVSDFSWNPNEPWTI 389 (422)
T ss_pred EEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccc------------ccccccCCCCCCeEE
Confidence 99999654 5555 4569999999975222 2223333443322 2458899998776 6
Q ss_pred EEecCCCcEEEEecCC
Q 010206 415 ATGSYSNLFRVFGCSE 430 (515)
Q Consensus 415 ~s~s~dg~i~iw~~~~ 430 (515)
++.++|+.+.||++..
T Consensus 390 ~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 390 ASVAEDNILQIWQMAE 405 (422)
T ss_pred EEecCCceEEEeeccc
Confidence 7889999999999873
No 94
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.8e-26 Score=209.85 Aligned_cols=270 Identities=16% Similarity=0.262 Sum_probs=214.9
Q ss_pred eEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEE
Q 010206 38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117 (515)
Q Consensus 38 v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~ 117 (515)
..-+.|+ ..+.||+|. +..|++|+..+++.. .+..+. + ..|++
T Consensus 180 ~nlldWs-s~n~laVal-g~~vylW~~~s~~v~---------------------~l~~~~--~------------~~vtS 222 (484)
T KOG0305|consen 180 LNLLDWS-SANVLAVAL-GQSVYLWSASSGSVT---------------------ELCSFG--E------------ELVTS 222 (484)
T ss_pred hhHhhcc-cCCeEEEEe-cceEEEEecCCCceE---------------------EeEecC--C------------CceEE
Confidence 3456777 445788875 447999998877632 112222 3 77999
Q ss_pred EEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCC
Q 010206 118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS 197 (515)
Q Consensus 118 l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 197 (515)
+.| +++|.+|++|..+|.|.|||..+.+....
T Consensus 223 v~w--s~~G~~LavG~~~g~v~iwD~~~~k~~~~---------------------------------------------- 254 (484)
T KOG0305|consen 223 VKW--SPDGSHLAVGTSDGTVQIWDVKEQKKTRT---------------------------------------------- 254 (484)
T ss_pred EEE--CCCCCEEEEeecCCeEEEEehhhcccccc----------------------------------------------
Confidence 999 56788999999999999999887542111
Q ss_pred CCCCCCcccEEeeeeeecccccccccceeeeeecc-CcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceeccc
Q 010206 198 SFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHA-HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 275 (515)
Q Consensus 198 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~ 275 (515)
+.+ |...|-+++|+ +..+.+| .|+.|..+|++..+....
T Consensus 255 --------------------------------~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~----- 295 (484)
T KOG0305|consen 255 --------------------------------LRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS----- 295 (484)
T ss_pred --------------------------------ccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh-----
Confidence 223 88999999998 6677788 899999999998776543
Q ss_pred CccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEcc-CC
Q 010206 276 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NG 354 (515)
Q Consensus 276 ~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~ 354 (515)
.+.+|...|..++|++|+ .++|+|+.|+.+.|||...... +..+.+|.+.|.+++|+| ..
T Consensus 296 --~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p----------------~~~~~~H~aAVKA~awcP~q~ 356 (484)
T KOG0305|consen 296 --TLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEP----------------KFTFTEHTAAVKALAWCPWQS 356 (484)
T ss_pred --hhhcccceeeeeEECCCC-CeeccCCCccceEeccCCCccc----------------cEEEeccceeeeEeeeCCCcc
Confidence 368899999999999999 9999999999999999944332 233677889999999999 66
Q ss_pred CEEEEEc---CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEe--cCCCcEEEEecC
Q 010206 355 RHILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG--SYSNLFRVFGCS 429 (515)
Q Consensus 355 ~~l~s~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~--s~dg~i~iw~~~ 429 (515)
.+||+|+ |+.|++||..+ +..+..+..... |.++.|++..+-|+++ -.++.|.||+..
T Consensus 357 ~lLAsGGGs~D~~i~fwn~~~-g~~i~~vdtgsQ----------------VcsL~Wsk~~kEi~sthG~s~n~i~lw~~p 419 (484)
T KOG0305|consen 357 GLLATGGGSADRCIKFWNTNT-GARIDSVDTGSQ----------------VCSLIWSKKYKELLSTHGYSENQITLWKYP 419 (484)
T ss_pred CceEEcCCCcccEEEEEEcCC-CcEecccccCCc----------------eeeEEEcCCCCEEEEecCCCCCcEEEEecc
Confidence 6888853 49999999996 666665543322 4589999998776654 367799999999
Q ss_pred CCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 430 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 430 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+. .+...+.+|...|-.++++|+|..+++|+.|.++++
T Consensus 420 s~-~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrf 457 (484)
T KOG0305|consen 420 SM-KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRF 457 (484)
T ss_pred cc-ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEe
Confidence 85 566899999999999999999999999999999999
No 95
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=1.3e-27 Score=198.29 Aligned_cols=284 Identities=16% Similarity=0.220 Sum_probs=223.3
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
.-+.|..| ++|+++|++++.||.|.+|+..+|++.+-.++.... .
T Consensus 214 Sh~EcA~F--SPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd-------------------------~-------- 258 (508)
T KOG0275|consen 214 SHVECARF--SPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD-------------------------N-------- 258 (508)
T ss_pred cchhheee--CCCCceEeeccccceeeeehhccchhhhhhhhhhhc-------------------------c--------
Confidence 55888999 567889999999999999999999876654443110 0
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
+--+...|.|++|+.|...|++| .||.|++|.++++....+
T Consensus 259 -------------------------------------fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRr- 300 (508)
T KOG0275|consen 259 -------------------------------------FMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRR- 300 (508)
T ss_pred -------------------------------------eeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHH-
Confidence 12355889999999999999999 899999999999876642
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
--..|...|+|+.|+.|+ ..+++++.|.++++.-+..|+...+ +.+|++.|+...|.
T Consensus 301 ------FdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~LKE----------------frGHsSyvn~a~ft 357 (508)
T KOG0275|consen 301 ------FDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCLKE----------------FRGHSSYVNEATFT 357 (508)
T ss_pred ------hhhhhccCeeEEEEccCc-chhhcccccceEEEeccccchhHHH----------------hcCccccccceEEc
Confidence 124799999999999998 8999999999999999999987543 78899999999999
Q ss_pred cCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcC-CCCEEEEecCCCcEEEEecC
Q 010206 352 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 352 ~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~s~dg~i~iw~~~ 429 (515)
+||..+++++ ||+|++|+..+ ..++.+++...... .|.++-.-| +...++.+...++|+|-++.
T Consensus 358 ~dG~~iisaSsDgtvkvW~~Kt-teC~~Tfk~~~~d~-------------~vnsv~~~PKnpeh~iVCNrsntv~imn~q 423 (508)
T KOG0275|consen 358 DDGHHIISASSDGTVKVWHGKT-TECLSTFKPLGTDY-------------PVNSVILLPKNPEHFIVCNRSNTVYIMNMQ 423 (508)
T ss_pred CCCCeEEEecCCccEEEecCcc-hhhhhhccCCCCcc-------------cceeEEEcCCCCceEEEEcCCCeEEEEecc
Confidence 9999999986 59999999997 88888887544221 133554444 45678889999999999987
Q ss_pred CCCcceeeecc---CCCceeeEEECCCCCeeEeecCCCeEEE--ecCCCCCccccCCccccccCCeeEEEEcCCCCEEEE
Q 010206 430 EGSAESTTLEA---SKNPMRRQVQTPSRPSRPLGSLSGVVRR--VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIAC 504 (515)
Q Consensus 430 ~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d~~v~l--~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~ 504 (515)
++.+.++.. .....-+.+.+|.|.++.+.++|+.++- ...+++. ....-|...+..++-+|..+.||+
T Consensus 424 --GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE-----~tl~VhEkdvIGl~HHPHqNllAs 496 (508)
T KOG0275|consen 424 --GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLE-----RTLPVHEKDVIGLTHHPHQNLLAS 496 (508)
T ss_pred --ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCcee-----eeeecccccccccccCcccchhhh
Confidence 345555532 2344557788999999999999999886 2222222 122237888999999999999999
Q ss_pred EcCCc-EEEE
Q 010206 505 AASNS-LYMY 513 (515)
Q Consensus 505 ~~~~~-~~i~ 513 (515)
-+.|| +.+|
T Consensus 497 YsEDgllKLW 506 (508)
T KOG0275|consen 497 YSEDGLLKLW 506 (508)
T ss_pred hcccchhhhc
Confidence 98887 5566
No 96
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=2.2e-26 Score=220.49 Aligned_cols=253 Identities=15% Similarity=0.177 Sum_probs=189.0
Q ss_pred eccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCC--Cccc---------ceecccCccccccCCceEEEEEecCCCc
Q 010206 230 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS--NQSF---------NIVDVKPANMEDLTEVITSAEFHPTHCN 297 (515)
Q Consensus 230 ~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~--~~~~---------~~~~~~~~~~~~~~~~i~~i~~~p~~~~ 297 (515)
...|.+.|+|+.|+|||++||+| +|+.|.+|+.... ...+ +-+.. ...+.+|...|..++|+|++ .
T Consensus 65 m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~-~~~l~~H~~DV~Dv~Wsp~~-~ 142 (942)
T KOG0973|consen 65 MDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKV-VSILRGHDSDVLDVNWSPDD-S 142 (942)
T ss_pred eccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeE-EEEEecCCCccceeccCCCc-c
Confidence 46899999999999999999999 8999999998731 0000 00000 02578899999999999998 9
Q ss_pred EEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCC
Q 010206 298 MLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGP 376 (515)
Q Consensus 298 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~ 376 (515)
+|++++.|++|.+||.++.+.. .++.+|.+.|..+.|.|-|+||++-+ |++|+||++.. -..
T Consensus 143 ~lvS~s~DnsViiwn~~tF~~~----------------~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d-w~i 205 (942)
T KOG0973|consen 143 LLVSVSLDNSVIIWNAKTFELL----------------KVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD-WGI 205 (942)
T ss_pred EEEEecccceEEEEccccceee----------------eeeecccccccceEECCccCeeeeecCCceEEEEEccc-cee
Confidence 9999999999999999887542 23677889999999999999999965 59999999764 455
Q ss_pred eeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEec----CCCcEEEEecCCCCcceeeeccCCCceeeEEECC
Q 010206 377 VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS----YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTP 452 (515)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s----~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~ 452 (515)
.+.+..+-...... .-...+.|||||++|++.. .-.++.|.+..+. .....|-+|..++..+.|.|
T Consensus 206 ~k~It~pf~~~~~~---------T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tW-k~~~~LvGH~~p~evvrFnP 275 (942)
T KOG0973|consen 206 EKSITKPFEESPLT---------TFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTW-KVDKDLVGHSAPVEVVRFNP 275 (942)
T ss_pred eEeeccchhhCCCc---------ceeeecccCCCcCeecchhhccCCcceeEEEecCCc-eeeeeeecCCCceEEEEeCh
Confidence 55555443221100 0134799999999999764 2347888887655 33478899999999999986
Q ss_pred C-----CC------------eeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCc-EEEE
Q 010206 453 S-----RP------------SRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS-LYMY 513 (515)
Q Consensus 453 ~-----~~------------~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~-~~i~ 513 (515)
. .+ .+|+||.|+++.++....+. .+.+..--+...|.+++|+|||-.|.+++-|| +.++
T Consensus 276 ~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R--Pl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 276 KLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR--PLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred HHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC--chhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEE
Confidence 1 11 57999999999995554443 23333333578999999999998888777555 5544
No 97
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5.2e-25 Score=200.29 Aligned_cols=372 Identities=14% Similarity=0.146 Sum_probs=245.4
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccce
Q 010206 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (515)
Q Consensus 35 ~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (515)
..+|.|+||+.+.+.||.+-.+|.|.||++...- -....+.+++ ...
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w----------------------~~~~vi~g~~-----------drs 71 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNW----------------------FLEPVIHGPE-----------DRS 71 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCc----------------------eeeEEEecCC-----------CCc
Confidence 4689999999999999999999999999986532 2344566655 378
Q ss_pred eEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCC
Q 010206 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (515)
Q Consensus 115 v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~ 194 (515)
|.+++|+ ++..|++.+.+|.|..||+.+.+.+...... .+.++ +++..|.+..+
T Consensus 72 IE~L~W~---e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~--------gg~IW-------siai~p~~~~l-------- 125 (691)
T KOG2048|consen 72 IESLAWA---EGGRLFSSGLSGSITEWDLHTLKQKYNIDSN--------GGAIW-------SIAINPENTIL-------- 125 (691)
T ss_pred eeeEEEc---cCCeEEeecCCceEEEEecccCceeEEecCC--------Cccee-------EEEeCCccceE--------
Confidence 9999996 3568999999999999999999877665544 35555 67777777766
Q ss_pred CCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceec
Q 010206 195 NDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 273 (515)
Q Consensus 195 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~ 273 (515)
+.|+.+|.+...+ ...... +..+. +....++|.+++|+|++..+++| .||.|++||..++...+ +..
T Consensus 126 ----~IgcddGvl~~~s--~~p~~I----~~~r~-l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~-~~~ 193 (691)
T KOG2048|consen 126 ----AIGCDDGVLYDFS--IGPDKI----TYKRS-LMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLH-IIT 193 (691)
T ss_pred ----EeecCCceEEEEe--cCCceE----EEEee-cccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEE-Eee
Confidence 9999999665554 221111 11111 24446899999999999999999 89999999999877654 222
Q ss_pred ccCccccc-cCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEcc
Q 010206 274 VKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 352 (515)
Q Consensus 274 ~~~~~~~~-~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 352 (515)
.....+.. ...-|+++.|-.++ .|++|...|.|.+||...+.+... +..|.+.|.+++..+
T Consensus 194 ~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTLiqS----------------~~~h~adVl~Lav~~ 255 (691)
T KOG2048|consen 194 MQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGTLIQS----------------HSCHDADVLALAVAD 255 (691)
T ss_pred ecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcchhhh----------------hhhhhcceeEEEEcC
Confidence 21112222 34457888888775 899999999999999999887543 455678899999999
Q ss_pred CCCEEEEEc-CCeEEEEEeeCCCCC---eeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEec
Q 010206 353 NGRHILSRD-YMTLKLWDINMDSGP---VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 428 (515)
Q Consensus 353 ~~~~l~s~~-~~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~ 428 (515)
++..+++++ |+.|..|........ ......|... |.+++..++ .|++|+.|..+.+-..
T Consensus 256 ~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hd---------------vrs~av~~~--~l~sgG~d~~l~i~~s 318 (691)
T KOG2048|consen 256 NEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHD---------------VRSMAVIEN--ALISGGRDFTLAICSS 318 (691)
T ss_pred CCCeEEEccCCCceEEEEecCCccceeeeccccCCccc---------------ceeeeeecc--eEEecceeeEEEEccc
Confidence 988888765 688888887753331 1112222222 447887766 8999999999988765
Q ss_pred CCCCcceeeeccCCCceee-EEECCCCCeeEeecCCCeEEE-ecCCCCCccc----cCCc-cccccCCeeEEEEcCCCCE
Q 010206 429 SEGSAESTTLEASKNPMRR-QVQTPSRPSRPLGSLSGVVRR-VKGADNSALD----ANGN-AFDFSMKLLHLAWHPSENS 501 (515)
Q Consensus 429 ~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~d~~v~l-~~~~~~~~~~----~~~~-~~~~~~~i~~~~~s~~~~~ 501 (515)
...+..-.. .....+-.. +...|..++++. -.+..+.+ ..|.-..+.+ ...+ .+.-...|.+.+.||||++
T Consensus 319 ~~~~~~~h~-~~~~~p~~~~v~~a~~~~L~~~-w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~ 396 (691)
T KOG2048|consen 319 REFKNMDHR-QKNLFPASDRVSVAPENRLLVL-WKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNL 396 (691)
T ss_pred cccCchhhh-ccccccccceeecCccceEEEE-eccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCE
Confidence 542111111 111111111 222233222222 11222222 1111100000 0111 1123467999999999999
Q ss_pred EEEEcCCcEEEEe
Q 010206 502 IACAASNSLYMYY 514 (515)
Q Consensus 502 la~~~~~~~~i~~ 514 (515)
||.++-..+.||.
T Consensus 397 Ia~st~~~~~iy~ 409 (691)
T KOG2048|consen 397 IAISTVSRTKIYR 409 (691)
T ss_pred EEEeeccceEEEE
Confidence 9999866666663
No 98
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=4.3e-26 Score=215.76 Aligned_cols=269 Identities=14% Similarity=0.237 Sum_probs=219.0
Q ss_pred ccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccc
Q 010206 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (515)
.|...+.|..|. ..++++++.+.+|++|+..++.. ....+.+|.
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~----------------------i~~~l~GH~------------ 249 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYL----------------------ILTRLVGHF------------ 249 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceE----------------------EEeeccCCC------------
Confidence 367789999998 45899999999999999887663 334489998
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
+.|.++++.. .+..|++|+.|.++++||..++++...
T Consensus 250 g~V~~l~~~~--~~~~lvsgS~D~t~rvWd~~sg~C~~~----------------------------------------- 286 (537)
T KOG0274|consen 250 GGVWGLAFPS--GGDKLVSGSTDKTERVWDCSTGECTHS----------------------------------------- 286 (537)
T ss_pred CCceeEEEec--CCCEEEEEecCCcEEeEecCCCcEEEE-----------------------------------------
Confidence 9999999942 456999999999999999988875544
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
+.+|...|.++... ...+++| .|.+|++|++.++....
T Consensus 287 -------------------------------------l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~-- 325 (537)
T KOG0274|consen 287 -------------------------------------LQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLN-- 325 (537)
T ss_pred -------------------------------------ecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEE--
Confidence 34677888887653 3456666 79999999999766542
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
.+.+|.++|+++..+ + .++++|+.|++|++||+++++++.. +.+|...|.++.+.
T Consensus 326 ------l~~~h~~~V~~v~~~--~-~~lvsgs~d~~v~VW~~~~~~cl~s----------------l~gH~~~V~sl~~~ 380 (537)
T KOG0274|consen 326 ------LLRGHTGPVNCVQLD--E-PLLVSGSYDGTVKVWDPRTGKCLKS----------------LSGHTGRVYSLIVD 380 (537)
T ss_pred ------EeccccccEEEEEec--C-CEEEEEecCceEEEEEhhhceeeee----------------ecCCcceEEEEEec
Confidence 456699999999998 4 6999999999999999998876432 67788999999887
Q ss_pred cCCCEEEEEc-CCeEEEEEeeCCC-CCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecC
Q 010206 352 RNGRHILSRD-YMTLKLWDINMDS-GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 352 ~~~~~l~s~~-~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~ 429 (515)
+. ..+++|+ |++|++||+.+ . +++.++.+|...+ -.....+++|++++.|++|++||.+
T Consensus 381 ~~-~~~~Sgs~D~~IkvWdl~~-~~~c~~tl~~h~~~v-----------------~~l~~~~~~Lvs~~aD~~Ik~WD~~ 441 (537)
T KOG0274|consen 381 SE-NRLLSGSLDTTIKVWDLRT-KRKCIHTLQGHTSLV-----------------SSLLLRDNFLVSSSADGTIKLWDAE 441 (537)
T ss_pred Cc-ceEEeeeeccceEeecCCc-hhhhhhhhcCCcccc-----------------cccccccceeEeccccccEEEeecc
Confidence 65 7888887 49999999997 6 8999999988763 2233467899999999999999999
Q ss_pred CCCcceeeecc-CCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 430 EGSAESTTLEA-SKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 430 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+++++ .++++ |...+..++.. ...+++++.|+.+++
T Consensus 442 ~~~~~-~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l 478 (537)
T KOG0274|consen 442 EGECL-RTLEGRHVGGVSALALG--KEEILCSSDDGSVKL 478 (537)
T ss_pred cCcee-eeeccCCcccEEEeecC--cceEEEEecCCeeEE
Confidence 98544 77877 67778777776 578899999999999
No 99
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1e-25 Score=195.77 Aligned_cols=290 Identities=17% Similarity=0.166 Sum_probs=214.5
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeE-EEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK-KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
|.-+|.++++ ++++.+.++++.|++|.-|++.+++.. .+.... .
T Consensus 141 H~~s~~~val--s~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~----------------------------e----- 185 (479)
T KOG0299|consen 141 HQLSVTSVAL--SPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD----------------------------E----- 185 (479)
T ss_pred ccCcceEEEe--eccccceeecCCCcceeeeehhcCcccccccccc----------------------------h-----
Confidence 3478999999 566789999999999999999998743 111110 0
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
+........ +..+ .+|...+.+++.++|+++|++| .|..|.||+.++.+..
T Consensus 186 ------------------------v~k~~~~~~-k~~r---~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv 237 (479)
T KOG0299|consen 186 ------------------------VLKSHGNPL-KESR---KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHV 237 (479)
T ss_pred ------------------------hhhhccCCC-Cccc---ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchh
Confidence 000000000 0000 3788999999999999999999 7999999999988765
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
. .+.+|.+.|.+++|-... ..+++++.|+.+++|++.....+. ++.+|.+.|.++
T Consensus 238 ~--------~~~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~s~ve----------------tlyGHqd~v~~I 292 (479)
T KOG0299|consen 238 K--------VFKGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQLSYVE----------------TLYGHQDGVLGI 292 (479)
T ss_pred h--------cccccccceeeeeeecCc-cceeeeecCCceEEEehhHhHHHH----------------HHhCCccceeee
Confidence 3 568999999999998765 889999999999999998765432 267888999999
Q ss_pred EEccCCCEEEEE-cCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 349 KFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 349 ~~s~~~~~l~s~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
.....++.+-+| .|+++++|++. ......+.++.... -+++|- +...+++||.+|.|.+|+
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi~--eesqlifrg~~~si---------------dcv~~I-n~~HfvsGSdnG~IaLWs 354 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKIP--EESQLIFRGGEGSI---------------DCVAFI-NDEHFVSGSDNGSIALWS 354 (479)
T ss_pred chhcccceEEeccccceeEEEecc--ccceeeeeCCCCCe---------------eeEEEe-cccceeeccCCceEEEee
Confidence 988888887777 46999999995 34444555565432 278887 556789999999999999
Q ss_pred cCCCCcceeeeccCC-----------CceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEc
Q 010206 428 CSEGSAESTTLEASK-----------NPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWH 496 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s 496 (515)
+...+.+...-.+|. ..+++++..|....+|+|+.+|.|||+........-.....+...+.|++++|+
T Consensus 355 ~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~ 434 (479)
T KOG0299|consen 355 LLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFS 434 (479)
T ss_pred ecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEc
Confidence 987755543323331 267899999999999999999999993222211101111223467899999999
Q ss_pred CCCCEEEEEc
Q 010206 497 PSENSIACAA 506 (515)
Q Consensus 497 ~~~~~la~~~ 506 (515)
++|++|++|.
T Consensus 435 ~sgk~ivagi 444 (479)
T KOG0299|consen 435 NSGKRIVAGI 444 (479)
T ss_pred cCCCEEEEec
Confidence 9999888774
No 100
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.8e-26 Score=183.99 Aligned_cols=247 Identities=16% Similarity=0.188 Sum_probs=190.4
Q ss_pred eccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEec--CCCcEEEEEecCC
Q 010206 230 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP--THCNMLAYSSSKG 306 (515)
Q Consensus 230 ~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p--~~~~~l~~~~~dg 306 (515)
...|...|.++..+-.|+.|+++ +|++|+|+.++...+...+ ..+.+|.++|..++|.. .| .+||+++.||
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll-----~~L~Gh~GPVwqv~wahPk~G-~iLAScsYDg 80 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLL-----AELTGHSGPVWKVAWAHPKFG-TILASCSYDG 80 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceee-----eEecCCCCCeeEEeecccccC-cEeeEeecCc
Confidence 46899999999999999999998 8999999999877653333 27899999999999954 45 8999999999
Q ss_pred eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccC--CCEEEEEc-CCeEEEEEeeCCCC--CeeeEe
Q 010206 307 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN--GRHILSRD-YMTLKLWDINMDSG--PVATFQ 381 (515)
Q Consensus 307 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~s~~-~~~i~iwd~~~~~~--~~~~~~ 381 (515)
.|.||.-.+++-.. ......|...|++++|.|. |-.|+.++ ||.|.|.+.+..+. ..+...
T Consensus 81 kVIiWke~~g~w~k--------------~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~ 146 (299)
T KOG1332|consen 81 KVIIWKEENGRWTK--------------AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVF 146 (299)
T ss_pred eEEEEecCCCchhh--------------hhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhh
Confidence 99999988774211 1225678899999999994 55667664 69999999986422 122334
Q ss_pred eeccccccccccccCCCccceeeEEEcCC---C-----------CEEEEecCCCcEEEEecCCCCcce-eeeccCCCcee
Q 010206 382 VHEHLRPKLCDLYENDSIFDKFECCLSGD---G-----------GRVATGSYSNLFRVFGCSEGSAES-TTLEASKNPMR 446 (515)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~-----------~~l~s~s~dg~i~iw~~~~~~~~~-~~~~~~~~~v~ 446 (515)
.|... |.+++|.|- | +.|++|+.|+.|+||+..++.... .+|++|.+-|+
T Consensus 147 aH~~G---------------vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVR 211 (299)
T KOG1332|consen 147 AHEIG---------------VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVR 211 (299)
T ss_pred ccccc---------------cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhh
Confidence 44433 558888885 4 569999999999999999875444 66999999999
Q ss_pred eEEECCCC----CeeEeecCCCeEEEecCCC---CCccccCCccccccCCeeEEEEcCCCCEEEEEc-CCcEEEEe
Q 010206 447 RQVQTPSR----PSRPLGSLSGVVRRVKGAD---NSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 514 (515)
Q Consensus 447 ~~~~~~~~----~~l~s~~~d~~v~l~~~~~---~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~-~~~~~i~~ 514 (515)
.+++.|.- .++|++|.||++.|....+ .++.++ +..+...+..++||+.|+.|++++ +|.+.+|-
T Consensus 212 DVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tl---l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 212 DVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTL---LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred hhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccc---cccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 99999864 5899999999999932221 221111 124678899999999999999665 66788873
No 101
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=4.2e-25 Score=182.49 Aligned_cols=278 Identities=13% Similarity=0.146 Sum_probs=209.6
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccc
Q 010206 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (515)
-.+.|+++.|+|.++.|+++++||.+++|++...... . .+.++.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~-----------------------~-------------~~~~~~ 55 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK-----------------------L-------------KFKHGA 55 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh-----------------------h-------------heecCC
Confidence 4688999999999999999999999999998765421 1 112227
Q ss_pred eeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccC
Q 010206 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (515)
Q Consensus 114 ~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~ 193 (515)
++.+.+|.+ ....++|+.||.|+.+|+.++....
T Consensus 56 plL~c~F~d---~~~~~~G~~dg~vr~~Dln~~~~~~------------------------------------------- 89 (323)
T KOG1036|consen 56 PLLDCAFAD---ESTIVTGGLDGQVRRYDLNTGNEDQ------------------------------------------- 89 (323)
T ss_pred ceeeeeccC---CceEEEeccCceEEEEEecCCccee-------------------------------------------
Confidence 799999943 4689999999999999998875211
Q ss_pred CCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccccee
Q 010206 194 SNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 272 (515)
Q Consensus 194 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 272 (515)
+..|...|+|+..++....+++| .|++|++||.+......
T Consensus 90 ------------------------------------igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~--- 130 (323)
T KOG1036|consen 90 ------------------------------------IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVG--- 130 (323)
T ss_pred ------------------------------------eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccc---
Confidence 35688999999999988888887 89999999998533221
Q ss_pred cccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEcc
Q 010206 273 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 352 (515)
Q Consensus 273 ~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 352 (515)
.+. ....|.++... + +.|+.|+.+..+.+||+++.....+. .+ ....-.++++++-|
T Consensus 131 -----~~d-~~kkVy~~~v~--g-~~LvVg~~~r~v~iyDLRn~~~~~q~------re--------S~lkyqtR~v~~~p 187 (323)
T KOG1036|consen 131 -----TFD-QGKKVYCMDVS--G-NRLVVGTSDRKVLIYDLRNLDEPFQR------RE--------SSLKYQTRCVALVP 187 (323)
T ss_pred -----ccc-cCceEEEEecc--C-CEEEEeecCceEEEEEcccccchhhh------cc--------ccceeEEEEEEEec
Confidence 112 23478887765 3 67889999999999999987543210 00 11124689999999
Q ss_pred CCCEEEEEc-CCeEEEEEeeCC---CCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEec
Q 010206 353 NGRHILSRD-YMTLKLWDINMD---SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 428 (515)
Q Consensus 353 ~~~~l~s~~-~~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~ 428 (515)
++.-.+.++ +|+|.+=.++.. ......|+.|..... ..+-+++|.+++|+|-.+.++||+.||.|.+||+
T Consensus 188 n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~------~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 188 NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEK------DTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDL 261 (323)
T ss_pred CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccC------CceEEEEeceeEeccccceEEecCCCceEEEccC
Confidence 777666665 598887666541 144567778875432 2234557889999999999999999999999999
Q ss_pred CCCCcceeeeccCCCceeeEEECCCCCeeEeecC
Q 010206 429 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL 462 (515)
Q Consensus 429 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 462 (515)
.+. +.+..+......|..++|+.+|..||.++.
T Consensus 262 ~~r-Krl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 262 FNR-KRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cch-hhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 987 444677777788999999999999998863
No 102
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=3.9e-25 Score=209.24 Aligned_cols=235 Identities=14% Similarity=0.170 Sum_probs=171.3
Q ss_pred eccCcCCeEEEEecC-CCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCe
Q 010206 230 AHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 307 (515)
Q Consensus 230 ~~~~~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~ 307 (515)
+.+|.+.|.+++|+| ++++|++| .|++|++||+.+........ .....+.+|...|.+++|+|++.++|++|+.|+.
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~-~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNIS-DPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccC-cceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 468999999999999 88899998 89999999997653211000 0012567899999999999986479999999999
Q ss_pred EEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccc
Q 010206 308 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHL 386 (515)
Q Consensus 308 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~ 386 (515)
|++||+++++... .+.+|...|.+++|+|+|.+|++++. +.|++||+++ ++.+..+.+|...
T Consensus 150 VrIWDl~tg~~~~----------------~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rs-g~~v~tl~~H~~~ 212 (493)
T PTZ00421 150 VNVWDVERGKAVE----------------VIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRD-GTIVSSVEAHASA 212 (493)
T ss_pred EEEEECCCCeEEE----------------EEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCC-CcEEEEEecCCCC
Confidence 9999998875421 24567788999999999999999875 9999999997 7777788777643
Q ss_pred cccccccccCCCccceeeEEEcCCCCEEEEec----CCCcEEEEecCCCCcceeeeccCC-CceeeEEECCCCCeeEeec
Q 010206 387 RPKLCDLYENDSIFDKFECCLSGDGGRVATGS----YSNLFRVFGCSEGSAESTTLEASK-NPMRRQVQTPSRPSRPLGS 461 (515)
Q Consensus 387 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s----~dg~i~iw~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~ 461 (515)
. ...+.|.+++..|++++ .|+.|++||+++..........+. ..+....+++++.+|++++
T Consensus 213 ~--------------~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lgg 278 (493)
T PTZ00421 213 K--------------SQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGS 278 (493)
T ss_pred c--------------ceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEE
Confidence 2 12577888888877654 579999999987654444444333 3455567899999998887
Q ss_pred -CCCeEEEecCCCCCccccCCccccccCCeeEEEEcCC
Q 010206 462 -LSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPS 498 (515)
Q Consensus 462 -~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 498 (515)
.|+.|++++-.+.. ........+...+..++|.|.
T Consensus 279 kgDg~Iriwdl~~~~--~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 279 KGEGNIRCFELMNER--LTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred eCCCeEEEEEeeCCc--eEEEeeccCCCCCcceEeccc
Confidence 59999993222111 000011123445677777775
No 103
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1.1e-25 Score=193.89 Aligned_cols=241 Identities=17% Similarity=0.179 Sum_probs=193.7
Q ss_pred eccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010206 230 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 308 (515)
Q Consensus 230 ~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i 308 (515)
+.||...|+.+.++++...++++ .|..|++|......... ....|.++|+.+..+|+| .+|++++.|++.
T Consensus 257 ~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~--------~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w 327 (506)
T KOG0289|consen 257 LKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT--------SSRPHEEPVTGLSLHPTG-EYLLSASNDGTW 327 (506)
T ss_pred ccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcc--------ccccccccceeeeeccCC-cEEEEecCCceE
Confidence 46899999999999999999998 89999999987655332 456799999999999999 999999999999
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccc
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLR 387 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~ 387 (515)
.+.|++++..+...... ...-.+++.+|+|||..+.+|.. +.|+|||+.. +..+..|.+|.+.
T Consensus 328 ~Fsd~~~g~~lt~vs~~--------------~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks-~~~~a~Fpght~~- 391 (506)
T KOG0289|consen 328 AFSDISSGSQLTVVSDE--------------TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS-QTNVAKFPGHTGP- 391 (506)
T ss_pred EEEEccCCcEEEEEeec--------------cccceeEEeeEcCCceEEeccCCCceEEEEEcCC-ccccccCCCCCCc-
Confidence 99999998754321100 01135899999999999999875 9999999997 6788899998877
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeec-cCCCceeeEEECCCCCeeEeecCCCeE
Q 010206 388 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE-ASKNPMRRQVQTPSRPSRPLGSLSGVV 466 (515)
Q Consensus 388 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~v 466 (515)
|..++|+.+|-||+++++|+.|++||++..+.. .++. ....++.++.|.+.|++|+.++.|=.|
T Consensus 392 --------------vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~-kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~V 456 (506)
T KOG0289|consen 392 --------------VKAISFSENGYWLATAADDGSVKLWDLRKLKNF-KTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQV 456 (506)
T ss_pred --------------eeEEEeccCceEEEEEecCCeEEEEEehhhccc-ceeeccccccceeEEEcCCCCeEEeecceeEE
Confidence 459999999999999999999999999966433 3433 334589999999999999999988888
Q ss_pred EEec-CCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcEEE
Q 010206 467 RRVK-GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYM 512 (515)
Q Consensus 467 ~l~~-~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~i 512 (515)
.+.+ ..+.| ........|.+..+.+.|....+++++++.+.++-
T Consensus 457 y~~~k~~k~W--~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~ 501 (506)
T KOG0289|consen 457 YICKKKTKSW--TEIKELADHSGLSTGVRFGEHAQYLASTSMDAILR 501 (506)
T ss_pred EEEecccccc--eeeehhhhcccccceeeecccceEEeeccchhheE
Confidence 8833 22233 22233445777889999999999999998776543
No 104
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=9.4e-26 Score=202.04 Aligned_cols=325 Identities=16% Similarity=0.220 Sum_probs=231.2
Q ss_pred hhhcccccccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCC
Q 010206 21 QVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHE 100 (515)
Q Consensus 21 ~~~~~~~~~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 100 (515)
+.|..+....+.+|++.|.||+..|.|.+||+|+.||+|+||.+.++..+ ..+
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcv-----------------------r~~---- 438 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCV-----------------------RTV---- 438 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEE-----------------------EEE----
Confidence 34666667778899999999999999999999999999999999988754 211
Q ss_pred CcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceee
Q 010206 101 PEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM 180 (515)
Q Consensus 101 ~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 180 (515)
...+.|.+|+|+|.++-..|+++-. ..+.+-+..-|........
T Consensus 439 ---------~~d~~I~~vaw~P~~~~~vLAvA~~-~~~~ivnp~~G~~~e~~~t-------------------------- 482 (733)
T KOG0650|consen 439 ---------QFDSEIRSVAWNPLSDLCVLAVAVG-ECVLIVNPIFGDRLEVGPT-------------------------- 482 (733)
T ss_pred ---------eecceeEEEEecCCCCceeEEEEec-CceEEeCccccchhhhcch--------------------------
Confidence 1125699999999887655555544 4466665443321111000
Q ss_pred cCCCccccccccCCCCCCCCC----CCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--C-
Q 010206 181 ANGGCGERNFGCASNDSSFPP----GGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--D- 253 (515)
Q Consensus 181 ~~g~~l~~~~~~~~~~~~~~~----~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~- 253 (515)
.+.++++ ..+..+-.|. -...+......+. .-.|...|..+.|+..|.+|++. +
T Consensus 483 --------------~ell~~~~~~~~p~~~~~~W~--~~~~~e~~~~v~~---~I~~~k~i~~vtWHrkGDYlatV~~~~ 543 (733)
T KOG0650|consen 483 --------------KELLASAPNESEPDAAVVTWS--RASLDELEKGVCI---VIKHPKSIRQVTWHRKGDYLATVMPDS 543 (733)
T ss_pred --------------hhhhhcCCCccCCcccceeec--hhhhhhhccceEE---EEecCCccceeeeecCCceEEEeccCC
Confidence 0000111 1223444454 1111111111111 24688999999999999999985 2
Q ss_pred -CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCC
Q 010206 254 -DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 332 (515)
Q Consensus 254 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 332 (515)
...|.|+++....... .+....+.|.++.|+|.. .+|+.++. ..|++||+..+.++.+
T Consensus 544 ~~~~VliHQLSK~~sQ~--------PF~kskG~vq~v~FHPs~-p~lfVaTq-~~vRiYdL~kqelvKk----------- 602 (733)
T KOG0650|consen 544 GNKSVLIHQLSKRKSQS--------PFRKSKGLVQRVKFHPSK-PYLFVATQ-RSVRIYDLSKQELVKK----------- 602 (733)
T ss_pred CcceEEEEecccccccC--------chhhcCCceeEEEecCCC-ceEEEEec-cceEEEehhHHHHHHH-----------
Confidence 5678899987554332 344457889999999998 56665554 6899999988665432
Q ss_pred CccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCC
Q 010206 333 GTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 411 (515)
Q Consensus 333 ~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 411 (515)
+......|..++.+|.|..|+.|+. +.+..+|+....++.+++..|... +.+++|++.-
T Consensus 603 -----L~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~a---------------vr~Va~H~ry 662 (733)
T KOG0650|consen 603 -----LLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKA---------------VRSVAFHKRY 662 (733)
T ss_pred -----HhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhh---------------hhhhhhcccc
Confidence 1112246999999999999999886 999999999878899999999876 4499999999
Q ss_pred CEEEEecCCCcEEEEecCCC-----Ccc---eeeeccCCCc----eeeEEECCCCCeeEeecCCCeEEE
Q 010206 412 GRVATGSYSNLFRVFGCSEG-----SAE---STTLEASKNP----MRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 412 ~~l~s~s~dg~i~iw~~~~~-----~~~---~~~~~~~~~~----v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.++++|+.||++.||--.-. ..+ +..|.+|... |-...|+|...||.+++.||+|++
T Consensus 663 PLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirl 731 (733)
T KOG0650|consen 663 PLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRL 731 (733)
T ss_pred ceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEe
Confidence 99999999999998843221 122 2567788765 777789999999999999999998
No 105
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=2.1e-25 Score=182.86 Aligned_cols=315 Identities=15% Similarity=0.234 Sum_probs=217.9
Q ss_pred ccccccceEEEEECC-CCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 31 EVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~-~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
...|.+.|+++.+.+ .|+|+++|+.||.|.|||+++...... ..+-.+... ..-...-.+|.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~--s~li~k~~c------~v~~~h~~~Hk--------- 101 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEA--SGLIAKHKC------IVAKQHENGHK--------- 101 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhh--ccceeheee------eccccCCccce---------
Confidence 457999999999998 789999999999999999976542100 000000000 00001123444
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
-.|..+.|-|...| .+.+++.|.++++||..+.+....+.++
T Consensus 102 ---y~iss~~WyP~DtG-mFtssSFDhtlKVWDtnTlQ~a~~F~me---------------------------------- 143 (397)
T KOG4283|consen 102 ---YAISSAIWYPIDTG-MFTSSSFDHTLKVWDTNTLQEAVDFKME---------------------------------- 143 (397)
T ss_pred ---eeeeeeEEeeecCc-eeecccccceEEEeecccceeeEEeecC----------------------------------
Confidence 78999999987665 8899999999999999887644443332
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC---CCCEEEEe-CCCcEEEEeCCCC
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS---DGETFISA-DDLRINLWNLEIS 265 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~s~-~d~~i~iwd~~~~ 265 (515)
+.|.+-+++| ...++++| .|-.|++-|+.++
T Consensus 144 ---------------------------------------------~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG 178 (397)
T KOG4283|consen 144 ---------------------------------------------GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG 178 (397)
T ss_pred ---------------------------------------------ceeehhhcChhhhcceEEEEecCCCcEEEEeccCC
Confidence 2333444444 23456677 8999999999988
Q ss_pred CcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCc--ccccccccc
Q 010206 266 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT--RSFFTEIIA 343 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 343 (515)
.... .+.+|.+.|.++.|+|.....|++|+.||.|++||++.-.-+ ...++.++...+ ...-..|.+
T Consensus 179 s~sH--------~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgc---f~~lD~hn~k~~p~~~~n~ah~g 247 (397)
T KOG4283|consen 179 SFSH--------TLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGC---FRVLDQHNTKRPPILKTNTAHYG 247 (397)
T ss_pred ccee--------eeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccce---eEEeecccCccCccccccccccc
Confidence 7553 779999999999999988678999999999999999876433 334444432111 113467889
Q ss_pred ceeEEEEccCCCEEEEE-cCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCc
Q 010206 344 SISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 422 (515)
Q Consensus 344 ~i~~~~~s~~~~~l~s~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~ 422 (515)
.+..++|+.+++++++. .+..+++|+..++...+..+..-. +++.+....-+. +.+...++---.++.
T Consensus 248 kvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~----------~n~~~~~~~~~~-~~~s~vfv~~p~~~~ 316 (397)
T KOG4283|consen 248 KVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPII----------HNQTTSFAVHIQ-SMDSDVFVLFPNDGS 316 (397)
T ss_pred eeeeeeecccchhhhhccCccceEEeecccCccccccccccc----------ccccccceEEEe-ecccceEEEEecCCe
Confidence 99999999999999985 569999999986333333221100 001110000122 333344443445688
Q ss_pred EEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 423 FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 423 i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+.++++-++ ..+..+..|...+.+.++.|+=+.+.+|+.|+.+..
T Consensus 317 lall~~~sg-s~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~ 361 (397)
T KOG4283|consen 317 LALLNLLEG-SFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYM 361 (397)
T ss_pred EEEEEccCc-eEEEeeecccceeeEEeecCchhhhhccccCCcccc
Confidence 999999887 455788899888999999999999999999998887
No 106
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=7.6e-27 Score=196.56 Aligned_cols=284 Identities=12% Similarity=0.181 Sum_probs=210.0
Q ss_pred eeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCC
Q 010206 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (515)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (515)
++..+.+|. +.|.+++=+|..- ..+++|+.||.|++||+.+..+...
T Consensus 58 Fv~~L~gHr------------dGV~~lakhp~~l-s~~aSGs~DG~VkiWnlsqR~~~~~-------------------- 104 (433)
T KOG0268|consen 58 FVGSLDGHR------------DGVSCLAKHPNKL-STVASGSCDGEVKIWNLSQRECIRT-------------------- 104 (433)
T ss_pred chhhccccc------------cccchhhcCcchh-hhhhccccCceEEEEehhhhhhhhe--------------------
Confidence 445567777 8899999876442 4789999999999999987542221
Q ss_pred CcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEE
Q 010206 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 251 (515)
Q Consensus 172 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 251 (515)
+..|.+.|..+++.. +..|.+
T Consensus 105 ----------------------------------------------------------f~AH~G~V~Gi~v~~-~~~~tv 125 (433)
T KOG0268|consen 105 ----------------------------------------------------------FKAHEGLVRGICVTQ-TSFFTV 125 (433)
T ss_pred ----------------------------------------------------------eecccCceeeEEecc-cceEEe
Confidence 367888999999877 444545
Q ss_pred eCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccC
Q 010206 252 ADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 331 (515)
Q Consensus 252 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 331 (515)
|+|.+|+.|.++.. ... ++. ....+..+.-+..+ ..+++++. .|.|||.+....+. .
T Consensus 126 gdDKtvK~wk~~~~--p~~-------til-g~s~~~gIdh~~~~-~~FaTcGe--~i~IWD~~R~~Pv~----s------ 182 (433)
T KOG0268|consen 126 GDDKTVKQWKIDGP--PLH-------TIL-GKSVYLGIDHHRKN-SVFATCGE--QIDIWDEQRDNPVS----S------ 182 (433)
T ss_pred cCCcceeeeeccCC--cce-------eee-cccccccccccccc-ccccccCc--eeeecccccCCccc----e------
Confidence 59999999998742 211 221 34556777777766 78888887 48899986554322 1
Q ss_pred CCccccccccccceeEEEEccCCC-EEEEE-cCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcC
Q 010206 332 PGTRSFFTEIIASISDIKFARNGR-HILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 409 (515)
Q Consensus 332 ~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 409 (515)
+......|.++.|+|-.. .|+++ +|+.|.+||++. ..+++.+...... ..++|+|
T Consensus 183 ------mswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~-~~Pl~KVi~~mRT----------------N~IswnP 239 (433)
T KOG0268|consen 183 ------MSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQ-ASPLKKVILTMRT----------------NTICWNP 239 (433)
T ss_pred ------eecCCCceeEEecCCCcchheeeeccCCceEEEeccc-CCccceeeeeccc----------------cceecCc
Confidence 222235799999999654 45554 679999999997 7777766544322 2799999
Q ss_pred CCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCC
Q 010206 410 DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMK 489 (515)
Q Consensus 410 ~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~ 489 (515)
++-.+++|++|..++.||++.-...+....+|.+.|..+.|+|.|+-+++||.|.+|||+...+.-..+.- ...--..
T Consensus 240 eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiY--htkRMq~ 317 (433)
T KOG0268|consen 240 EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIY--HTKRMQH 317 (433)
T ss_pred cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhh--hHhhhhe
Confidence 88889999999999999999877777888999999999999999999999999999999332221110000 0011246
Q ss_pred eeEEEEcCCCCEEEEEcCCc-EEEEeC
Q 010206 490 LLHLAWHPSENSIACAASNS-LYMYYA 515 (515)
Q Consensus 490 i~~~~~s~~~~~la~~~~~~-~~i~~~ 515 (515)
|.++.||-|.+++.+|++++ +.+|-|
T Consensus 318 V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 318 VFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred eeEEEEeccccEEEecCCCcceeeeec
Confidence 89999999999999999765 999965
No 107
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.95 E-value=1.5e-25 Score=186.00 Aligned_cols=310 Identities=14% Similarity=0.223 Sum_probs=223.9
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccccee
Q 010206 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (515)
Q Consensus 36 ~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (515)
.-...+.|||||.-|++-+.|..+.+|++....-..+. ........++++++. ..+.|
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~-----~~~~~~~~~~~~r~~-----------------eg~tv 107 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA-----DGPLNFSKHLSYRYQ-----------------EGETV 107 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcccCC-----CCccccccceeEEec-----------------cCCEE
Confidence 34567899999999999999999999998543211000 000001111111111 11557
Q ss_pred EEEEEee-----cCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 116 NKIRWCQ-----SANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 116 ~~l~~~~-----~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..-+|-+ .++..++++.+.|.-|++||.-+++++.....
T Consensus 108 ydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~------------------------------------ 151 (406)
T KOG2919|consen 108 YDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRA------------------------------------ 151 (406)
T ss_pred EEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhh------------------------------------
Confidence 7777753 44566888899999999999998875443221
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFN 270 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~ 270 (515)
|| . ...-....+++|+|||..|++|....|+++|+........
T Consensus 152 -------------------yd-----h-------------~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~ 194 (406)
T KOG2919|consen 152 -------------------YD-----H-------------QDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCP 194 (406)
T ss_pred -------------------hh-----h-------------HHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCc
Confidence 11 0 0011234689999999999999999999999954443332
Q ss_pred eecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEE
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 350 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (515)
........-.+..+-|.+++|+|.....++.|+....+-||.-..+..+ .++.+|.+.|+.++|
T Consensus 195 vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl----------------~llggh~gGvThL~~ 258 (406)
T KOG2919|consen 195 VYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL----------------QLLGGHGGGVTHLQW 258 (406)
T ss_pred chhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCce----------------eeecccCCCeeeEEe
Confidence 2211111123446778999999988679999999999999887665442 236688899999999
Q ss_pred ccCCCEEEEEcC--CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEec
Q 010206 351 ARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 428 (515)
Q Consensus 351 s~~~~~l~s~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~ 428 (515)
.++|+.|++|.. ..|-.||++....++..+..|....+ +.| -....|++++|++|+.||.|++||+
T Consensus 259 ~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TN--------QRI----~FDld~~~~~LasG~tdG~V~vwdl 326 (406)
T KOG2919|consen 259 CEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTN--------QRI----LFDLDPKGEILASGDTDGSVRVWDL 326 (406)
T ss_pred ccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCcc--------ceE----EEecCCCCceeeccCCCccEEEEec
Confidence 999999999864 79999999987888888887765322 212 4667889999999999999999999
Q ss_pred CCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 429 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 429 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+..+.....+..+..-++.+.+.|.-+.+|+++.......
T Consensus 327 k~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr~f~~ 366 (406)
T KOG2919|consen 327 KDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQRIFKY 366 (406)
T ss_pred CCCCCcccccccccccccceecCcccceeeeccCceeecC
Confidence 9855666788899999999999999999999987665555
No 108
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.4e-25 Score=185.87 Aligned_cols=292 Identities=13% Similarity=0.180 Sum_probs=196.5
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCccc--CccccCcc-cccccccCCccceeeeec--ccCC----
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDN--GGQRRDLE-MMDYSMSRHPEFRYKTEF--QSHE---- 100 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~h~---- 100 (515)
...+|.+.|++++|+.||++||+.+.|+.|+||++.+-... .-+|..++ ++...+.|.|+-+-.... .+..
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 35689999999999999999999999999999998764322 12233333 234456666654322210 0000
Q ss_pred -------C----ccccccc--c--cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCC
Q 010206 101 -------P----EFDYLKS--L--EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNG 165 (515)
Q Consensus 101 -------~----~~~~~~~--~--~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 165 (515)
. -+..... + .++-.|..+-. -.++.++++++.|..|.+|+++ |+.......+....
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi--A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n------ 231 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI--AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSN------ 231 (420)
T ss_pred EeeecccCCCCcccccccccccchhcccceEEEee--cCCceEEEEecCCCcEEEEecC-Cceeeeeccccccc------
Confidence 0 0000000 0 12233444444 5567899999999999999999 54444333322110
Q ss_pred CccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC
Q 010206 166 PIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD 245 (515)
Q Consensus 166 ~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 245 (515)
...+.||+|+.+ ++++....+++|.+ +...++......+...+.+|+..|..++|+++
T Consensus 232 ---------~~aavSP~GRFi------------a~~gFTpDVkVwE~-~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~ 289 (420)
T KOG2096|consen 232 ---------YDAAVSPDGRFI------------AVSGFTPDVKVWEP-IFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS 289 (420)
T ss_pred ---------cceeeCCCCcEE------------EEecCCCCceEEEE-EeccCcchhhhhhhheeccchhheeeeeeCCC
Confidence 156899999999 99999999999996 55555444333333346899999999999999
Q ss_pred CCEEEEe-CCCcEEEEeCCCCCcc---cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCccccccc
Q 010206 246 GETFISA-DDLRINLWNLEISNQS---FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT 321 (515)
Q Consensus 246 ~~~l~s~-~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 321 (515)
...+++. .||++++||.+-.... ..++..-+..+..-.+....++.+|++ ..|+. +....+++|..++++....
T Consensus 290 S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g-~~lA~-s~gs~l~~~~se~g~~~~~ 367 (420)
T KOG2096|consen 290 STRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG-DSLAV-SFGSDLKVFASEDGKDYPE 367 (420)
T ss_pred cceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC-cEEEe-ecCCceEEEEcccCccchh
Confidence 9999998 8999999998643211 111111111222334445689999999 66664 5556899999988764322
Q ss_pred ccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEE
Q 010206 322 HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWD 369 (515)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd 369 (515)
+-..|...|.+++|+++|+++++++|..++++.
T Consensus 368 ---------------~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 368 ---------------LEDIHSTTISSISYSSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred ---------------HHHhhcCceeeEEecCCCcEEeeecceeeeeec
Confidence 124577899999999999999999998888876
No 109
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=2.2e-25 Score=203.19 Aligned_cols=274 Identities=14% Similarity=0.237 Sum_probs=220.3
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
+..+|...|..+++.+.. .++++++||++++|+-..++.. -...+.+|.
T Consensus 9 ~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l---------------------~~~~~~~~~--------- 57 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYL---------------------ETHAFEGPK--------- 57 (745)
T ss_pred EeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccc---------------------cceecccCc---------
Confidence 356899999999987654 7899999999999997655532 223456665
Q ss_pred cccceeEE-EEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccc
Q 010206 110 EIEEKINK-IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (515)
Q Consensus 110 ~~~~~v~~-l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~ 188 (515)
+.|.. ++|.+ .++..+++|+.|.+|.+|.+.+.....
T Consensus 58 ---g~i~~~i~y~e-~~~~~l~~g~~D~~i~v~~~~~~~P~~-------------------------------------- 95 (745)
T KOG0301|consen 58 ---GFIANSICYAE-SDKGRLVVGGMDTTIIVFKLSQAEPLY-------------------------------------- 95 (745)
T ss_pred ---ceeeccceecc-ccCcceEeecccceEEEEecCCCCchh--------------------------------------
Confidence 66766 88876 455579999999999999877643111
Q ss_pred ccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCc
Q 010206 189 NFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
++.+|...|.+++...++. +++| .|.++++|-.....
T Consensus 96 ----------------------------------------~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~- 133 (745)
T KOG0301|consen 96 ----------------------------------------TLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELV- 133 (745)
T ss_pred ----------------------------------------hhhccccceeeeecCCcCc-eEecccccceEEecchhhh-
Confidence 1579999999999888887 7887 79999999875332
Q ss_pred ccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 347 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (515)
. .+++|+..|+++++-|.+ .+++|+.|.+|++|.-. +. ..++.+|...|+.
T Consensus 134 -~--------~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~~--~~----------------l~tf~gHtD~VRg 184 (745)
T KOG0301|consen 134 -Y--------SLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKGG--TL----------------LKTFSGHTDCVRG 184 (745)
T ss_pred -c--------ccCCcchheeeeeecCCC--cEEeccCcceeeeccCC--ch----------------hhhhccchhheee
Confidence 1 568999999999999986 89999999999999853 22 1237889999999
Q ss_pred EEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 348 IKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 348 ~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
+++-+++.++-++.||.|++|++. +..+.++.+|... ++++....++..++++++|++++||+
T Consensus 185 L~vl~~~~flScsNDg~Ir~w~~~--ge~l~~~~ghtn~---------------vYsis~~~~~~~Ivs~gEDrtlriW~ 247 (745)
T KOG0301|consen 185 LAVLDDSHFLSCSNDGSIRLWDLD--GEVLLEMHGHTNF---------------VYSISMALSDGLIVSTGEDRTLRIWK 247 (745)
T ss_pred eEEecCCCeEeecCCceEEEEecc--CceeeeeeccceE---------------EEEEEecCCCCeEEEecCCceEEEee
Confidence 999988777777778999999995 8899999999877 45888888889999999999999999
Q ss_pred cCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 428 CSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.. ...+.+......++++.+-++|. +++|+.||.||+
T Consensus 248 ~~---e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrV 284 (745)
T KOG0301|consen 248 KD---ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRV 284 (745)
T ss_pred cC---ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEE
Confidence 87 34466666677888888887775 567888999999
No 110
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=1.4e-25 Score=185.11 Aligned_cols=302 Identities=14% Similarity=0.169 Sum_probs=207.1
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..+.+.+| ++||.++++|+.|-.|+|.|++.--.+.... . .
T Consensus 113 ~~cR~aaf--s~DG~lvATGsaD~SIKildvermlaks~~~-e-----------------------m------------- 153 (430)
T KOG0640|consen 113 SPCRAAAF--SPDGSLVATGSADASIKILDVERMLAKSKPK-E-----------------------M------------- 153 (430)
T ss_pred cceeeeee--CCCCcEEEccCCcceEEEeehhhhhhhcchh-h-----------------------h-------------
Confidence 88999999 6789999999999999999987421111000 0 0
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
..+. ... ..+....+..|...|+++.|+|....|++| .|++|+++|+.........
T Consensus 154 ------~~~~----------------~qa-~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~ 210 (430)
T KOG0640|consen 154 ------ISGD----------------TQA-RHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAF 210 (430)
T ss_pred ------ccCC----------------ccc-CCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHH
Confidence 0000 000 111112257899999999999999999999 8999999999754322111
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
+.-....+|.++.|+|.| .+|+.|..-..+++||+.+-++... . ..-.+|++.|+++.++
T Consensus 211 ------K~~qd~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~Qcfvs-------a------nPd~qht~ai~~V~Ys 270 (430)
T KOG0640|consen 211 ------KVFQDTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFVS-------A------NPDDQHTGAITQVRYS 270 (430)
T ss_pred ------HHhhccceeeeEeecCCC-ceEEEecCCCceeEEeccceeEeee-------c------CcccccccceeEEEec
Confidence 122246789999999999 8999999999999999998765321 0 0136688999999999
Q ss_pred cCCCEEEEEcC-CeEEEEEeeCCCCCeeeEee-eccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecC
Q 010206 352 RNGRHILSRDY-MTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 352 ~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~ 429 (515)
+.|++.++|+. |.|++||--. .+++.++.. |.+. .|.+..|..+|+||.+.+.|..+++|.+.
T Consensus 271 ~t~~lYvTaSkDG~IklwDGVS-~rCv~t~~~AH~gs--------------evcSa~Ftkn~kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 271 STGSLYVTASKDGAIKLWDGVS-NRCVRTIGNAHGGS--------------EVCSAVFTKNGKYILSSGKDSTVKLWEIS 335 (430)
T ss_pred CCccEEEEeccCCcEEeecccc-HHHHHHHHhhcCCc--------------eeeeEEEccCCeEEeecCCcceeeeeeec
Confidence 99999999986 9999999876 788877753 3332 15589999999999999999999999999
Q ss_pred CCCcceeeeccC-----CCceeeEEECCCCCeeEeecC-CCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEE
Q 010206 430 EGSAESTTLEAS-----KNPMRRQVQTPSRPSRPLGSL-SGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIA 503 (515)
Q Consensus 430 ~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~s~~~-d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la 503 (515)
++..+. ...+. ..--+...|.....+++.-.+ .+.+.-++...- .......++|.+.++.+.-||.+..+.
T Consensus 336 t~R~l~-~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta--dr~~l~slgHn~a~R~i~HSP~~p~Fm 412 (430)
T KOG0640|consen 336 TGRMLK-EYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA--DRVALLSLGHNGAVRWIVHSPVEPAFM 412 (430)
T ss_pred CCceEE-EEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch--hhhhhcccCCCCCceEEEeCCCCCcee
Confidence 985553 33221 111122223333333322221 112221111111 122234567999999999999999888
Q ss_pred EEcCC-cEEEEe
Q 010206 504 CAASN-SLYMYY 514 (515)
Q Consensus 504 ~~~~~-~~~i~~ 514 (515)
++++| ...+|+
T Consensus 413 TcsdD~raRFWy 424 (430)
T KOG0640|consen 413 TCSDDFRARFWY 424 (430)
T ss_pred eecccceeeeee
Confidence 77765 467775
No 111
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5e-26 Score=181.49 Aligned_cols=261 Identities=16% Similarity=0.227 Sum_probs=199.9
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
.+.+|.+.|..+...--|+.|||++.|++|+|+.+.+... .+.+.++.+|.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~--------------------s~ll~~L~Gh~--------- 56 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ--------------------SKLLAELTGHS--------- 56 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC--------------------ceeeeEecCCC---------
Confidence 4568999999999999999999999999999999876542 23678899999
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
++|..++|....-|.+|++++.||.|.||.-.+++..+...
T Consensus 57 ---GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e------------------------------------ 97 (299)
T KOG1332|consen 57 ---GPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYE------------------------------------ 97 (299)
T ss_pred ---CCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhh------------------------------------
Confidence 99999999765668899999999999999988774222111
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC--CCEEEEe-CCCcEEEEeCCCCC
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISN 266 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~ 266 (515)
...|...|++++|.|. |-.|+++ +||.|.+.+.+...
T Consensus 98 ----------------------------------------~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g 137 (299)
T KOG1332|consen 98 ----------------------------------------HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG 137 (299)
T ss_pred ----------------------------------------hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC
Confidence 2478899999999885 5567777 89999999988662
Q ss_pred cccceecccCccccccCCceEEEEEecC---C----------CcEEEEEecCCeEEEEecCcccccccccceeeeccCCC
Q 010206 267 QSFNIVDVKPANMEDLTEVITSAEFHPT---H----------CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 333 (515)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~i~~i~~~p~---~----------~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 333 (515)
.-.. +.....|.-.|++++|.|- | .+.|++|+.|..|+||+..++.-..
T Consensus 138 ~w~t-----~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~------------- 199 (299)
T KOG1332|consen 138 GWTT-----SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKL------------- 199 (299)
T ss_pred Cccc-----hhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhh-------------
Confidence 2110 1134679999999999985 2 1469999999999999998864221
Q ss_pred ccccccccccceeEEEEccC----CCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEc
Q 010206 334 TRSFFTEIIASISDIKFARN----GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 408 (515)
Q Consensus 334 ~~~~~~~~~~~i~~~~~s~~----~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 408 (515)
..++.+|...|+.++|.|. ..+|++++. |++.||..+.+..+-+.-..+... ..++.+.||
T Consensus 200 -e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~-------------~~~w~vSWS 265 (299)
T KOG1332|consen 200 -ERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFP-------------DVVWRVSWS 265 (299)
T ss_pred -hhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCC-------------cceEEEEEe
Confidence 1237889999999999994 357888875 999999887432221111111111 115689999
Q ss_pred CCCCEEEEecCCCcEEEEecCC
Q 010206 409 GDGGRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 409 ~~~~~l~s~s~dg~i~iw~~~~ 430 (515)
..|+.|+.++.|+.|.+|.-..
T Consensus 266 ~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 266 LSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ccccEEEEecCCcEEEEEEeCC
Confidence 9999999999999999997654
No 112
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=5.4e-26 Score=181.90 Aligned_cols=236 Identities=13% Similarity=0.190 Sum_probs=186.9
Q ss_pred eccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010206 230 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 308 (515)
Q Consensus 230 ~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i 308 (515)
+.+|.+.|++.+++.+...-+++ .|-+-++||.-++..+.. -.|+.-|..++|+.|. +.|++|+.+..+
T Consensus 55 feghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhs---------f~hkhivk~~af~~ds-~~lltgg~ekll 124 (334)
T KOG0278|consen 55 FEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHS---------FEHKHIVKAVAFSQDS-NYLLTGGQEKLL 124 (334)
T ss_pred eeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhh---------hhhhheeeeEEecccc-hhhhccchHHHh
Confidence 36899999999998888777777 799999999998887643 2488999999999998 899999999999
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccc
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLR 387 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~ 387 (515)
|+||++..+.. ...+.+|.+.|..+.|....+.+++..+ ++||+||.++ +..++++.....
T Consensus 125 rvfdln~p~Ap---------------p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rT-gt~v~sL~~~s~-- 186 (334)
T KOG0278|consen 125 RVFDLNRPKAP---------------PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRT-GTEVQSLEFNSP-- 186 (334)
T ss_pred hhhhccCCCCC---------------chhhcCCCCcceeEEEeccCceEEeeccCCceEEEEecc-CcEEEEEecCCC--
Confidence 99999765432 2236889999999999987778887655 9999999998 888888875543
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEE
Q 010206 388 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVR 467 (515)
Q Consensus 388 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~ 467 (515)
|+++.+++||++|.+ +..+.|.+||.++-+.+ +..+. ...|.+...+|+...+++|+.|..++
T Consensus 187 --------------VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~~l-Ks~k~-P~nV~SASL~P~k~~fVaGged~~~~ 249 (334)
T KOG0278|consen 187 --------------VTSLEVSQDGRILTI-AYGSSVKFWDAKSFGLL-KSYKM-PCNVESASLHPKKEFFVAGGEDFKVY 249 (334)
T ss_pred --------------CcceeeccCCCEEEE-ecCceeEEeccccccce-eeccC-ccccccccccCCCceEEecCcceEEE
Confidence 358999999997765 45678999999876333 22222 23466778899999999999999998
Q ss_pred Ee--cCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCc-EEEEe
Q 010206 468 RV--KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS-LYMYY 514 (515)
Q Consensus 468 l~--~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~-~~i~~ 514 (515)
.+ ...+.. ..-.-+|-++|.++.|+|||..-|+|+.|| +.||+
T Consensus 250 kfDy~TgeEi----~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 250 KFDYNTGEEI----GSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred EEeccCCcee----eecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence 82 222111 111346889999999999999999999877 88997
No 113
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=1.3e-26 Score=198.50 Aligned_cols=274 Identities=20% Similarity=0.295 Sum_probs=207.5
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
+.|..+.|.+. ...|++++.|..|++|++..++......
T Consensus 176 gev~~v~~l~~--sdtlatgg~Dr~Ik~W~v~~~k~~~~~t--------------------------------------- 214 (459)
T KOG0288|consen 176 GEVHDVEFLRN--SDTLATGGSDRIIKLWNVLGEKSELIST--------------------------------------- 214 (459)
T ss_pred cccceeEEccC--cchhhhcchhhhhhhhhcccchhhhhhh---------------------------------------
Confidence 88999999654 4589999999999999987765111100
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
+.+..+.|+++.|.++++.++++ .|+.+++|++...+...
T Consensus 215 -------------------------------------LaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~-- 255 (459)
T KOG0288|consen 215 -------------------------------------LAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH-- 255 (459)
T ss_pred -------------------------------------hhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhh--
Confidence 24555789999999999988887 89999999998665442
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
++.+|++.|+++.|.... ..+++|+.|.+|++||+....+..+. +.. +.+..|..+
T Consensus 256 ------TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~---l~~--------------S~cnDI~~~ 311 (459)
T KOG0288|consen 256 ------TLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTV---LPG--------------SQCNDIVCS 311 (459)
T ss_pred ------hhcccccceeeehhhccc-cceeeccccchhhhhhhhhhheeccc---ccc--------------ccccceEec
Confidence 778999999999999876 55999999999999999886543221 111 345556655
Q ss_pred cCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCC
Q 010206 352 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 352 ~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~ 430 (515)
...+++|. |++|++||.+. ..+......+.. |+++..+++|..|.+.+.|..+.+.|+++
T Consensus 312 --~~~~~SgH~DkkvRfwD~Rs-~~~~~sv~~gg~----------------vtSl~ls~~g~~lLsssRDdtl~viDlRt 372 (459)
T KOG0288|consen 312 --ISDVISGHFDKKVRFWDIRS-ADKTRSVPLGGR----------------VTSLDLSMDGLELLSSSRDDTLKVIDLRT 372 (459)
T ss_pred --ceeeeecccccceEEEeccC-CceeeEeecCcc----------------eeeEeeccCCeEEeeecCCCceeeeeccc
Confidence 45677775 48999999996 777777766652 56999999999999999999999999997
Q ss_pred CCcceeeeccC----CCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccc--cccCCeeEEEEcCCCCEEEE
Q 010206 431 GSAESTTLEAS----KNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAF--DFSMKLLHLAWHPSENSIAC 504 (515)
Q Consensus 431 ~~~~~~~~~~~----~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~la~ 504 (515)
. ...+.+.+. ....+.+.|+|++.|+++||.||.|++ |+.....+..... .....|++++|+|.|..|++
T Consensus 373 ~-eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~i---W~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Lls 448 (459)
T KOG0288|consen 373 K-EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYI---WSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLS 448 (459)
T ss_pred c-cEEEEeeccccccccccceeEECCCCceeeeccCCCcEEE---EEccCceEEEEeccCCCCcceEEEEEcCCCchhhc
Confidence 6 444555432 234889999999999999999999999 3332222222221 12236999999999999998
Q ss_pred EcCCc-EEEE
Q 010206 505 AASNS-LYMY 513 (515)
Q Consensus 505 ~~~~~-~~i~ 513 (515)
++.+. +.+|
T Consensus 449 adk~~~v~lW 458 (459)
T KOG0288|consen 449 ADKQKAVTLW 458 (459)
T ss_pred ccCCcceEec
Confidence 87554 6676
No 114
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=8.5e-24 Score=166.90 Aligned_cols=252 Identities=15% Similarity=0.159 Sum_probs=184.2
Q ss_pred ccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecC---CCcEEEEEec-C
Q 010206 231 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSS-K 305 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~---~~~~l~~~~~-d 305 (515)
+.|.+.|.|.+|+|+|++|++| .|.+|++.-.+.......-. ...+..|.+.|+.++|-.+ +..+|++++. |
T Consensus 86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~---dle~nmhdgtirdl~fld~~~s~~~il~s~gagd 162 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGH---DLEFNMHDGTIRDLAFLDDPESGGAILASAGAGD 162 (350)
T ss_pred cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCc---ceeeeecCCceeeeEEecCCCcCceEEEecCCCc
Confidence 6789999999999999999999 89999998776443221100 0145668999999999643 3357777665 6
Q ss_pred CeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeec
Q 010206 306 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHE 384 (515)
Q Consensus 306 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~ 384 (515)
..|.+-|...++.. ..+.+|++-|.++- +=+|-.+++|+. .+|++||++- ..++.++...-
T Consensus 163 c~iy~tdc~~g~~~----------------~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv-~~~v~~l~~~~ 224 (350)
T KOG0641|consen 163 CKIYITDCGRGQGF----------------HALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRV-NSCVNTLDNDF 224 (350)
T ss_pred ceEEEeecCCCCcc----------------eeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeec-cceeeeccCcc
Confidence 77777787776542 22677888888763 335888999986 9999999996 55555553211
Q ss_pred cccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCC
Q 010206 385 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSG 464 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 464 (515)
.... + .-..|.+++..|.|++|++|-.|....+||++.+ ..++.+..|...|+++.|+|...|+++++.|.
T Consensus 225 ~~~g-l-------essavaav~vdpsgrll~sg~~dssc~lydirg~-r~iq~f~phsadir~vrfsp~a~yllt~syd~ 295 (350)
T KOG0641|consen 225 HDGG-L-------ESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG-RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDM 295 (350)
T ss_pred cCCC-c-------ccceeEEEEECCCcceeeeccCCCceEEEEeeCC-ceeeeeCCCccceeEEEeCCCceEEEEecccc
Confidence 1000 0 0013668999999999999999999999999966 66789999999999999999999999999999
Q ss_pred eEEE--ecCCCCCccccC-CccccccCCeeEEEEcCCCCEEE-EEcCCcEEEEe
Q 010206 465 VVRR--VKGADNSALDAN-GNAFDFSMKLLHLAWHPSENSIA-CAASNSLYMYY 514 (515)
Q Consensus 465 ~v~l--~~~~~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~la-~~~~~~~~i~~ 514 (515)
.|++ +.|.-.. ++. ...-+|+..+..+.|+|+.--+. ++.+...-+|.
T Consensus 296 ~ikltdlqgdla~--el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 296 KIKLTDLQGDLAH--ELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWA 347 (350)
T ss_pred eEEEeecccchhh--cCceEEEEeccCceEEEEecCccceeeeccCcceEEEec
Confidence 9999 3222111 111 11236889999999999865544 55566677774
No 115
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1e-24 Score=180.70 Aligned_cols=293 Identities=15% Similarity=0.212 Sum_probs=195.9
Q ss_pred eecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCc
Q 010206 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS 173 (515)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (515)
..+.+|. ..|++++| +.||++|++++.|++|++|+++.-..+...-+.
T Consensus 80 ~~LKgH~------------~~vt~~~F--sSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R------------------ 127 (420)
T KOG2096|consen 80 SVLKGHK------------KEVTDVAF--SSDGKKLATISGDRSIRLWDVRDFENKEHRCIR------------------ 127 (420)
T ss_pred hhhhccC------------CceeeeEE--cCCCceeEEEeCCceEEEEecchhhhhhhhHhh------------------
Confidence 3467787 88999999 678999999999999999999873211110000
Q ss_pred CCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-
Q 010206 174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA- 252 (515)
Q Consensus 174 ~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~- 252 (515)
.+. .. +..+.+.|.||-+-++..
T Consensus 128 -----------------------------------------~nv------------e~---dhpT~V~FapDc~s~vv~~ 151 (420)
T KOG2096|consen 128 -----------------------------------------QNV------------EY---DHPTRVVFAPDCKSVVVSV 151 (420)
T ss_pred -----------------------------------------ccc------------cC---CCceEEEECCCcceEEEEE
Confidence 000 01 244678899988777765
Q ss_pred -CCCcEEEEeCCCCCc---ccceecccCc-cccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceee
Q 010206 253 -DDLRINLWNLEISNQ---SFNIVDVKPA-NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 327 (515)
Q Consensus 253 -~d~~i~iwd~~~~~~---~~~~~~~~~~-~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 327 (515)
...++++|.+...+. ....+..... --+.|+-.+..+-...++ .+|++++.|..|.+|+++ |+.+.. .+
T Consensus 152 ~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lk-Gq~L~~----id 225 (420)
T KOG2096|consen 152 KRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLK-GQLLQS----ID 225 (420)
T ss_pred ccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCc-eEEEEecCCCcEEEEecC-Cceeee----ec
Confidence 678899997653321 1111100000 112356667777777776 899999999999999998 544321 11
Q ss_pred eccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCC-------CCCeeeEeeeccccccccccccCCCc
Q 010206 328 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMD-------SGPVATFQVHEHLRPKLCDLYENDSI 399 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (515)
.. ...-+..+.||+|++++++.- -.|++|.+--. -..+..+.+|...
T Consensus 226 tn------------q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~sa------------- 280 (420)
T KOG2096|consen 226 TN------------QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSA------------- 280 (420)
T ss_pred cc------------cccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhh-------------
Confidence 11 123466789999999999876 78999997421 1234556677655
Q ss_pred cceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcce---eee-------ccCCCceeeEEECCCCCeeEeecCCCeEEE-
Q 010206 400 FDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES---TTL-------EASKNPMRRQVQTPSRPSRPLGSLSGVVRR- 468 (515)
Q Consensus 400 ~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~---~~~-------~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l- 468 (515)
|+.++|+++...++|.|.||++++||..-..... ..| .........+..+|+++.||.+.. ..+++
T Consensus 281 --V~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~ 357 (420)
T KOG2096|consen 281 --VLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVF 357 (420)
T ss_pred --eeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEE
Confidence 5699999999999999999999999986431110 112 222333448999999999877643 33444
Q ss_pred --ecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcEEEE
Q 010206 469 --VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 513 (515)
Q Consensus 469 --~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~i~ 513 (515)
.+|.... ++. --|...|.+++|+++|+++|+.++.-+.++
T Consensus 358 ~se~g~~~~--~~e---~~h~~~Is~is~~~~g~~~atcGdr~vrv~ 399 (420)
T KOG2096|consen 358 ASEDGKDYP--ELE---DIHSTTISSISYSSDGKYIATCGDRYVRVI 399 (420)
T ss_pred EcccCccch--hHH---HhhcCceeeEEecCCCcEEeeecceeeeee
Confidence 2222221 111 127889999999999999999988776665
No 116
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=8.7e-25 Score=179.90 Aligned_cols=271 Identities=12% Similarity=0.158 Sum_probs=198.3
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCC-eeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
..|.+|+|+|..+ .++++++.|++||+|+++.. .... +
T Consensus 28 DsIS~l~FSP~~~-~~~~A~SWD~tVR~wevq~~g~~~~---------------------------------k------- 66 (347)
T KOG0647|consen 28 DSISALAFSPQAD-NLLAAGSWDGTVRIWEVQNSGQLVP---------------------------------K------- 66 (347)
T ss_pred cchheeEeccccC-ceEEecccCCceEEEEEecCCcccc---------------------------------h-------
Confidence 7899999988444 46778999999999999863 2100 0
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccc
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 270 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 270 (515)
....|.++|.+++|+.||..+++| .|+.+++||+.+++..
T Consensus 67 -------------------------------------a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~-- 107 (347)
T KOG0647|consen 67 -------------------------------------AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVS-- 107 (347)
T ss_pred -------------------------------------hhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCee--
Confidence 025688999999999999999998 8999999999987433
Q ss_pred eecccCccccccCCceEEEEEecCC-CcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTH-CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
.+..|.++|.++.|-+.. ...|++|+.|.+|+.||+|....+ .+++.+ ..++++.
T Consensus 108 -------~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv----~t~~LP-------------eRvYa~D 163 (347)
T KOG0647|consen 108 -------QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPV----ATLQLP-------------ERVYAAD 163 (347)
T ss_pred -------eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCee----eeeecc-------------ceeeehh
Confidence 567799999999998754 138999999999999999976543 223322 3455555
Q ss_pred EccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEec
Q 010206 350 FARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 428 (515)
Q Consensus 350 ~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~ 428 (515)
.- ..+++.+. +..|.+|+++++....+........ .+.+++.-+|.+..+.|+-+|++-|..+
T Consensus 164 v~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~--------------Q~R~va~f~d~~~~alGsiEGrv~iq~i 227 (347)
T KOG0647|consen 164 VL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKW--------------QTRCVACFQDKDGFALGSIEGRVAIQYI 227 (347)
T ss_pred cc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccc--------------eeeEEEEEecCCceEeeeecceEEEEec
Confidence 43 34555554 4899999998644444433322211 1347888888888899999999999999
Q ss_pred CCCCcce-eeeccCC---------CceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCC
Q 010206 429 SEGSAES-TTLEASK---------NPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPS 498 (515)
Q Consensus 429 ~~~~~~~-~~~~~~~---------~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 498 (515)
..+.+.. -+++.|. .+|+.++|+|.-..|++.+.||++.+++..... -......|..+|++.+|+.+
T Consensus 228 d~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~---kLk~s~~~~qpItcc~fn~~ 304 (347)
T KOG0647|consen 228 DDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDART---KLKTSETHPQPITCCSFNRN 304 (347)
T ss_pred CCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhh---hhhccCcCCCccceeEecCC
Confidence 8753321 4566665 257889999999999999999999993322211 11122346789999999999
Q ss_pred CCEEEEEc
Q 010206 499 ENSIACAA 506 (515)
Q Consensus 499 ~~~la~~~ 506 (515)
|.++|-+.
T Consensus 305 G~ifaYA~ 312 (347)
T KOG0647|consen 305 GSIFAYAL 312 (347)
T ss_pred CCEEEEEe
Confidence 99999554
No 117
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=8.3e-25 Score=181.09 Aligned_cols=253 Identities=18% Similarity=0.312 Sum_probs=190.2
Q ss_pred cccccchhhhhcccccccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCcccee
Q 010206 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY 92 (515)
Q Consensus 13 ~~~~w~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (515)
+...|.+.+.|. +-.|..+|+|+|.+ |.++|+|+.|-+|+|||.......
T Consensus 27 ~s~~~~l~~lF~------~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~ql---------------------- 76 (362)
T KOG0294|consen 27 DSVKPTLKPLFA------FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQL---------------------- 76 (362)
T ss_pred cccceeeecccc------ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhh----------------------
Confidence 344566666544 45799999999986 889999999999999999876643
Q ss_pred eeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCC
Q 010206 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (515)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (515)
..+-.|. +.|+++.|.+......|++|+.||.|.+|+...-.....
T Consensus 77 -g~ll~Ha------------gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~s--------------------- 122 (362)
T KOG0294|consen 77 -GILLSHA------------GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKS--------------------- 122 (362)
T ss_pred -cceeccc------------cceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeee---------------------
Confidence 3455666 889999996544344899999999999999876432211
Q ss_pred cCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe
Q 010206 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 252 (515)
Q Consensus 173 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 252 (515)
+++|.+.|+.++.+|.+++-++.
T Consensus 123 ---------------------------------------------------------lK~H~~~Vt~lsiHPS~KLALsV 145 (362)
T KOG0294|consen 123 ---------------------------------------------------------LKAHKGQVTDLSIHPSGKLALSV 145 (362)
T ss_pred ---------------------------------------------------------ecccccccceeEecCCCceEEEE
Confidence 46888889999999999987775
Q ss_pred -CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccC
Q 010206 253 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 331 (515)
Q Consensus 253 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 331 (515)
.|+.++.||+-+++..+.. . .....+.+.|+|.| .+|+.+..+ .|-+|.+.+..+..+ .+.+
T Consensus 146 g~D~~lr~WNLV~Gr~a~v~------~---L~~~at~v~w~~~G-d~F~v~~~~-~i~i~q~d~A~v~~~----i~~~-- 208 (362)
T KOG0294|consen 146 GGDQVLRTWNLVRGRVAFVL------N---LKNKATLVSWSPQG-DHFVVSGRN-KIDIYQLDNASVFRE----IENP-- 208 (362)
T ss_pred cCCceeeeehhhcCccceee------c---cCCcceeeEEcCCC-CEEEEEecc-EEEEEecccHhHhhh----hhcc--
Confidence 8999999999887754321 1 12334559999999 777776665 688999887654322 1110
Q ss_pred CCccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEE--Ec
Q 010206 332 PGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC--LS 408 (515)
Q Consensus 332 ~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~s 408 (515)
..+.++.|. ++..|++|. ++.|.+||... ..+...+.+|...+. ++. -.
T Consensus 209 -----------~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~RVK---------------~i~~~~~ 260 (362)
T KOG0294|consen 209 -----------KRILCATFL-DGSELLVGGDNEWISLKDTDS-DTPLTEFLAHENRVK---------------DIASYTN 260 (362)
T ss_pred -----------ccceeeeec-CCceEEEecCCceEEEeccCC-Cccceeeecchhhee---------------eeEEEec
Confidence 236677776 455666665 49999999986 889999999986533 333 35
Q ss_pred CCCCEEEEecCCCcEEEEecCCC
Q 010206 409 GDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 409 ~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
|++.+|+|+|.||.|++||+...
T Consensus 261 ~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 261 PEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred CCceEEEEeccCceEEEEEcccc
Confidence 67899999999999999999865
No 118
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=4.6e-25 Score=208.83 Aligned_cols=252 Identities=15% Similarity=0.232 Sum_probs=201.4
Q ss_pred ccchhhhhcccccccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeee
Q 010206 16 EWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTE 95 (515)
Q Consensus 16 ~w~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (515)
.|+..+.+- ......+|.+.|.+++|..-+.+|++|+.|.+++|||..+++ +...
T Consensus 232 ~~~~~~~~~--i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~-----------------------C~~~ 286 (537)
T KOG0274|consen 232 LWDLNNGYL--ILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE-----------------------CTHS 286 (537)
T ss_pred EeecccceE--EEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc-----------------------EEEE
Confidence 566665433 233367999999999998878899999999999999998887 5578
Q ss_pred cccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCC
Q 010206 96 FQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAI 175 (515)
Q Consensus 96 ~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 175 (515)
+.+|. +.|.++... ..++++|+.|.+|++|++.++....+
T Consensus 287 l~gh~------------stv~~~~~~----~~~~~sgs~D~tVkVW~v~n~~~l~l------------------------ 326 (537)
T KOG0274|consen 287 LQGHT------------SSVRCLTID----PFLLVSGSRDNTVKVWDVTNGACLNL------------------------ 326 (537)
T ss_pred ecCCC------------ceEEEEEcc----CceEeeccCCceEEEEeccCcceEEE------------------------
Confidence 89998 889999873 23788889999999999997664332
Q ss_pred CceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CC
Q 010206 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD 254 (515)
Q Consensus 176 ~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d 254 (515)
+.+|...|+++..+ +.++++| .|
T Consensus 327 ------------------------------------------------------~~~h~~~V~~v~~~--~~~lvsgs~d 350 (537)
T KOG0274|consen 327 ------------------------------------------------------LRGHTGPVNCVQLD--EPLLVSGSYD 350 (537)
T ss_pred ------------------------------------------------------eccccccEEEEEec--CCEEEEEecC
Confidence 24588999999987 7788888 89
Q ss_pred CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcc-cccccccceeeeccCCC
Q 010206 255 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS-ALCDTHSKLFEEQEAPG 333 (515)
Q Consensus 255 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~~~~ 333 (515)
++|++||+.+.+... .+.+|..+|+++.+.+. ..+++|+.|++|++||+++. ++.
T Consensus 351 ~~v~VW~~~~~~cl~--------sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~-------------- 406 (537)
T KOG0274|consen 351 GTVKVWDPRTGKCLK--------SLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCI-------------- 406 (537)
T ss_pred ceEEEEEhhhceeee--------eecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhhh--------------
Confidence 999999999776553 67889999999988874 58999999999999999998 432
Q ss_pred ccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeee-ccccccccccccCCCccceeeEEEcCCC
Q 010206 334 TRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVH-EHLRPKLCDLYENDSIFDKFECCLSGDG 411 (515)
Q Consensus 334 ~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 411 (515)
.++.+|.+-+..+.+ .+++|++++ |++|++||... +++++++.++ ... |+.+++. .
T Consensus 407 --~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~-~~~~~~~~~~~~~~---------------v~~l~~~--~ 464 (537)
T KOG0274|consen 407 --HTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEE-GECLRTLEGRHVGG---------------VSALALG--K 464 (537)
T ss_pred --hhhcCCccccccccc--ccceeEeccccccEEEeeccc-CceeeeeccCCccc---------------EEEeecC--c
Confidence 235667677766665 477899876 49999999996 8889888874 222 3355544 4
Q ss_pred CEEEEecCCCcEEEEecCCCCcc
Q 010206 412 GRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 412 ~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
..+++++.||.+++||++++...
T Consensus 465 ~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 465 EEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred ceEEEEecCCeeEEEecccCchh
Confidence 67888999999999999998444
No 119
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=3.6e-24 Score=199.26 Aligned_cols=354 Identities=16% Similarity=0.190 Sum_probs=244.9
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
...++.+.|+++.=+|-=+.+|.|..+|+|.|+++..++.+ .+|+...
T Consensus 197 ~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil-----------------------~sFk~d~--------- 244 (910)
T KOG1539|consen 197 TFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKIL-----------------------MSFKQDW--------- 244 (910)
T ss_pred EecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEE-----------------------EEEEccc---------
Confidence 34567799999999998889999999999999999887743 4444433
Q ss_pred cccceeEEEEEeecCCCc-EEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccc
Q 010206 110 EIEEKINKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~ 188 (515)
+.|+++.| ..||. .+++++..|.+.+||++..++........ .+.+. ...|.|....+
T Consensus 245 ---g~VtslSF--rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah-------~~sv~-------~~~fl~~epVl-- 303 (910)
T KOG1539|consen 245 ---GRVTSLSF--RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAH-------YGSVT-------GATFLPGEPVL-- 303 (910)
T ss_pred ---cceeEEEe--ccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccc-------cCCcc-------cceecCCCceE--
Confidence 78999999 44554 45556777999999999988766544211 12232 55666666666
Q ss_pred ccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEec-CCCCEEEEe-CCCcEEEEeCCCCC
Q 010206 189 NFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNN-SDGETFISA-DDLRINLWNLEISN 266 (515)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~-~d~~i~iwd~~~~~ 266 (515)
++.+.|+.+++|- ....++. ....+. -.||..+..|+.|. .++..+.++ .|++.+.+++....
T Consensus 304 ----------~ta~~DnSlk~~v--fD~~dg~--pR~LR~-R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~ 368 (910)
T KOG1539|consen 304 ----------VTAGADNSLKVWV--FDSGDGV--PRLLRS-RGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISES 368 (910)
T ss_pred ----------eeccCCCceeEEE--eeCCCCc--chheee-ccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHH
Confidence 9999999999997 4434432 112222 36899999999987 577777776 78877777653211
Q ss_pred cccc-----------------------------------------------------eec----------ccCccccccC
Q 010206 267 QSFN-----------------------------------------------------IVD----------VKPANMEDLT 283 (515)
Q Consensus 267 ~~~~-----------------------------------------------------~~~----------~~~~~~~~~~ 283 (515)
+..+ .++ ++|..+....
T Consensus 369 ~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~ 448 (910)
T KOG1539|consen 369 QSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDD 448 (910)
T ss_pred HhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccC
Confidence 0000 000 0111122234
Q ss_pred CceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-
Q 010206 284 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY- 362 (515)
Q Consensus 284 ~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~- 362 (515)
..+++++.++-| ++.+.|...|.|-+|++..|-...+ |.. -..|.++|++++...-++.+++++.
T Consensus 449 ~~~~av~vs~CG-NF~~IG~S~G~Id~fNmQSGi~r~s----f~~---------~~ah~~~V~gla~D~~n~~~vsa~~~ 514 (910)
T KOG1539|consen 449 INATAVCVSFCG-NFVFIGYSKGTIDRFNMQSGIHRKS----FGD---------SPAHKGEVTGLAVDGTNRLLVSAGAD 514 (910)
T ss_pred cceEEEEEeccC-ceEEEeccCCeEEEEEcccCeeecc----ccc---------CccccCceeEEEecCCCceEEEccCc
Confidence 668899999998 8999999999999999998864322 110 2467899999999988888998765
Q ss_pred CeEEEEEeeCCCCCeeeEeeeccccc-------cc----c-----ccccC----------CCccceeeEEEcCCCCEEEE
Q 010206 363 MTLKLWDINMDSGPVATFQVHEHLRP-------KL----C-----DLYEN----------DSIFDKFECCLSGDGGRVAT 416 (515)
Q Consensus 363 ~~i~iwd~~~~~~~~~~~~~~~~~~~-------~~----~-----~~~~~----------~~~~~v~~~~~s~~~~~l~s 416 (515)
|.+++||+.. ..++..+........ .+ + .++.. +.-..+++++|||||++|++
T Consensus 515 Gilkfw~f~~-k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlis 593 (910)
T KOG1539|consen 515 GILKFWDFKK-KVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLIS 593 (910)
T ss_pred ceEEEEecCC-cceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEE
Confidence 9999999985 443333322111000 00 0 00000 01124679999999999999
Q ss_pred ecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCC-CeEEE
Q 010206 417 GSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS-GVVRR 468 (515)
Q Consensus 417 ~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-~~v~l 468 (515)
++.|++|++||+.++. ++..+ .-..+...+.++|+|.+||+...| ..|++
T Consensus 594 asmD~tIr~wDlpt~~-lID~~-~vd~~~~sls~SPngD~LAT~Hvd~~gIyl 644 (910)
T KOG1539|consen 594 ASMDSTIRTWDLPTGT-LIDGL-LVDSPCTSLSFSPNGDFLATVHVDQNGIYL 644 (910)
T ss_pred eecCCcEEEEeccCcc-eeeeE-ecCCcceeeEECCCCCEEEEEEecCceEEE
Confidence 9999999999999983 43222 235678899999999999999998 56777
No 120
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=2.7e-24 Score=177.77 Aligned_cols=267 Identities=15% Similarity=0.220 Sum_probs=196.2
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|.++.|+|+ +..|++++.||++++||+....++.
T Consensus 14 d~IS~v~f~~~--~~~LLvssWDgslrlYdv~~~~l~~------------------------------------------ 49 (323)
T KOG1036|consen 14 DGISSVKFSPS--SSDLLVSSWDGSLRLYDVPANSLKL------------------------------------------ 49 (323)
T ss_pred hceeeEEEcCc--CCcEEEEeccCcEEEEeccchhhhh------------------------------------------
Confidence 77999999744 4589999999999999987653211
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
...|..++.+++|.++.+ +++| -||.|+.+|+.++...
T Consensus 50 -------------------------------------~~~~~~plL~c~F~d~~~-~~~G~~dg~vr~~Dln~~~~~--- 88 (323)
T KOG1036|consen 50 -------------------------------------KFKHGAPLLDCAFADEST-IVTGGLDGQVRRYDLNTGNED--- 88 (323)
T ss_pred -------------------------------------heecCCceeeeeccCCce-EEEeccCceEEEEEecCCcce---
Confidence 125668899999988654 5555 8999999999987654
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
.+..|..+|.|+.+++-. ..+++|+.|++|++||.++.... ..++.. ..|.++..+
T Consensus 89 ------~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~~----~~~d~~-------------kkVy~~~v~ 144 (323)
T KOG1036|consen 89 ------QIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVVV----GTFDQG-------------KKVYCMDVS 144 (323)
T ss_pred ------eeccCCCceEEEEeeccC-CeEEEcccCccEEEEeccccccc----cccccC-------------ceEEEEecc
Confidence 556799999999999876 79999999999999999973321 122211 358888776
Q ss_pred cCCCEEEE-EcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCC
Q 010206 352 RNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 352 ~~~~~l~s-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~ 430 (515)
|..|+. +.+..+.+||+++-..+.+... .... +.+.++++-|++.-.+.+|-||+|.+=.++.
T Consensus 145 --g~~LvVg~~~r~v~iyDLRn~~~~~q~re--S~lk------------yqtR~v~~~pn~eGy~~sSieGRVavE~~d~ 208 (323)
T KOG1036|consen 145 --GNRLVVGTSDRKVLIYDLRNLDEPFQRRE--SSLK------------YQTRCVALVPNGEGYVVSSIEGRVAVEYFDD 208 (323)
T ss_pred --CCEEEEeecCceEEEEEcccccchhhhcc--ccce------------eEEEEEEEecCCCceEEEeecceEEEEccCC
Confidence 556666 4569999999997433332211 1111 1134889999888899999999998855554
Q ss_pred CC---cceeeeccCC---------CceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCC
Q 010206 431 GS---AESTTLEASK---------NPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPS 498 (515)
Q Consensus 431 ~~---~~~~~~~~~~---------~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 498 (515)
.. .....++.|. .||++++|+|-.++++||+.||.|.+ |++...+...+...+...|.+++|+.|
T Consensus 209 s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~---Wd~~~rKrl~q~~~~~~SI~slsfs~d 285 (323)
T KOG1036|consen 209 SEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNI---WDLFNRKRLKQLAKYETSISSLSFSMD 285 (323)
T ss_pred chHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEE---ccCcchhhhhhccCCCCceEEEEeccC
Confidence 31 2224566664 47999999999999999999999999 433322233344456678999999999
Q ss_pred CCEEEEEcC
Q 010206 499 ENSIACAAS 507 (515)
Q Consensus 499 ~~~la~~~~ 507 (515)
|..||+|++
T Consensus 286 G~~LAia~s 294 (323)
T KOG1036|consen 286 GSLLAIASS 294 (323)
T ss_pred CCeEEEEec
Confidence 999999873
No 121
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=4e-25 Score=192.00 Aligned_cols=260 Identities=12% Similarity=0.122 Sum_probs=198.0
Q ss_pred ccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCccccee-cccC-ccccccCCceEEEEEecCCCcEEEEEecCC
Q 010206 231 HAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIV-DVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKG 306 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~-~~~~-~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg 306 (515)
..|.+.|+.+...|+...++++ ..+.|.|||..+........ ..+| ..+.+|...-++++|++...-.|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 4788999999999987777764 79999999987554332211 1222 367888887889999998767999999999
Q ss_pred eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccC-CCEEEEEcC-CeEEEEEeeC-CCCCeeeEeee
Q 010206 307 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-GRHILSRDY-MTLKLWDINM-DSGPVATFQVH 383 (515)
Q Consensus 307 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~s~~~-~~i~iwd~~~-~~~~~~~~~~~ 383 (515)
.|++||+...... .....++..+.+|...|..++|++- ..++++.++ +.+.|||+++ ..++.....+|
T Consensus 201 ~i~lwdi~~~~~~---------~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah 271 (422)
T KOG0264|consen 201 TICLWDINAESKE---------DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAH 271 (422)
T ss_pred cEEEEeccccccC---------CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccccc
Confidence 9999999765431 1112234557889999999999994 445556554 9999999995 35666677777
Q ss_pred ccccccccccccCCCccceeeEEEcC-CCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCC-CeeEeec
Q 010206 384 EHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR-PSRPLGS 461 (515)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~ 461 (515)
... +++++|+| ++..|||||.|++|.+||+++-...+.++++|...|..+.|+|.. ..|||++
T Consensus 272 ~~~---------------vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg 336 (422)
T KOG0264|consen 272 SAE---------------VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG 336 (422)
T ss_pred CCc---------------eeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc
Confidence 765 56999999 455788999999999999999877889999999999999999976 4689999
Q ss_pred CCCeEEEecCCCCC-----------ccccCCccccccCCeeEEEEcCCCCEEE-EEc-CCcEEEEe
Q 010206 462 LSGVVRRVKGADNS-----------ALDANGNAFDFSMKLLHLAWHPSENSIA-CAA-SNSLYMYY 514 (515)
Q Consensus 462 ~d~~v~l~~~~~~~-----------~~~~~~~~~~~~~~i~~~~~s~~~~~la-~~~-~~~~~i~~ 514 (515)
.|+.+.+++-.+.- +.++....-+|...|..++|+|...+++ +++ ++-+.||.
T Consensus 337 ~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 337 TDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred cCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 99999992221111 1122333458999999999999999876 334 45588885
No 122
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.1e-24 Score=190.91 Aligned_cols=242 Identities=15% Similarity=0.254 Sum_probs=192.2
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccc
Q 010206 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (515)
-.+.|.++.|-.||++||+|+..|.|+|||..+.. .+..+.+|+ .
T Consensus 67 Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~-----------------------iLR~~~ah~------------a 111 (487)
T KOG0310|consen 67 FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV-----------------------ILRQLYAHQ------------A 111 (487)
T ss_pred hccceeEEEeecCCeEEEccCCcCcEEEeccccHH-----------------------HHHHHhhcc------------C
Confidence 46789999999999999999999999999955422 345688888 8
Q ss_pred eeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccC
Q 010206 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (515)
Q Consensus 114 ~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~ 193 (515)
+|..+.|+|. ++..|++|+.|+.+++||+.+... .
T Consensus 112 pv~~~~f~~~-d~t~l~s~sDd~v~k~~d~s~a~v--~------------------------------------------ 146 (487)
T KOG0310|consen 112 PVHVTKFSPQ-DNTMLVSGSDDKVVKYWDLSTAYV--Q------------------------------------------ 146 (487)
T ss_pred ceeEEEeccc-CCeEEEecCCCceEEEEEcCCcEE--E------------------------------------------
Confidence 9999999875 457888999999999999987642 1
Q ss_pred CCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC-CCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 194 SNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 194 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
..+.+|...|+|.+|+|. +..+++| .||.|++||++......
T Consensus 147 ----------------------------------~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v-- 190 (487)
T KOG0310|consen 147 ----------------------------------AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRV-- 190 (487)
T ss_pred ----------------------------------EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCcee--
Confidence 014689999999999996 4477778 79999999999774221
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
.--.|..+|-++.+-|.| .+|++++. ..+++||+-+|..... .+..|...|+|+.+.
T Consensus 191 ------~elnhg~pVe~vl~lpsg-s~iasAgG-n~vkVWDl~~G~qll~---------------~~~~H~KtVTcL~l~ 247 (487)
T KOG0310|consen 191 ------VELNHGCPVESVLALPSG-SLIASAGG-NSVKVWDLTTGGQLLT---------------SMFNHNKTVTCLRLA 247 (487)
T ss_pred ------EEecCCCceeeEEEcCCC-CEEEEcCC-CeEEEEEecCCceehh---------------hhhcccceEEEEEee
Confidence 113489999999999998 78887765 4899999986643211 123377889999999
Q ss_pred cCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCC
Q 010206 352 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 352 ~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~ 430 (515)
.++..|++|+ |+.+++||+.+ .+.+..+..... |.+++.+||++.++.|..||.+.+=+...
T Consensus 248 s~~~rLlS~sLD~~VKVfd~t~-~Kvv~s~~~~~p----------------vLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 248 SDSTRLLSGSLDRHVKVFDTTN-YKVVHSWKYPGP----------------VLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred cCCceEeecccccceEEEEccc-eEEEEeeecccc----------------eeeEEecCCCceEEEecccceeeeehhhc
Confidence 9999999987 69999999775 777777665442 45999999999999999999988775544
Q ss_pred C
Q 010206 431 G 431 (515)
Q Consensus 431 ~ 431 (515)
+
T Consensus 311 k 311 (487)
T KOG0310|consen 311 K 311 (487)
T ss_pred c
Confidence 3
No 123
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.1e-25 Score=203.60 Aligned_cols=237 Identities=20% Similarity=0.254 Sum_probs=190.2
Q ss_pred CCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCC-cccceecccC
Q 010206 199 FPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN-QSFNIVDVKP 276 (515)
Q Consensus 199 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~-~~~~~~~~~~ 276 (515)
++|+.||.|++|+ ............... +..|...|+.+....+++.|+++ .|-+|++|+..... ...
T Consensus 41 fTgGRDg~i~~W~--~~~d~~~~s~~~~as-me~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~------- 110 (735)
T KOG0308|consen 41 FTGGRDGIIRLWS--VTQDSNEPSTPYIAS-MEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCM------- 110 (735)
T ss_pred EecCCCceEEEec--cccccCCcccchhhh-hhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhH-------
Confidence 9999999999999 333322211112222 47899999999999999999998 89999999998664 122
Q ss_pred ccccccCCceEEEEE-ecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCC
Q 010206 277 ANMEDLTEVITSAEF-HPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 355 (515)
Q Consensus 277 ~~~~~~~~~i~~i~~-~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 355 (515)
..+..|.+.|.|+++ .++. .++|+|+.|+.|.+||+.++.. +....++.... .....++..+|++++.++.|.
T Consensus 111 stir~H~DYVkcla~~ak~~-~lvaSgGLD~~IflWDin~~~~--~l~~s~n~~t~---~sl~sG~k~siYSLA~N~t~t 184 (735)
T KOG0308|consen 111 STIRTHKDYVKCLAYIAKNN-ELVASGGLDRKIFLWDINTGTA--TLVASFNNVTV---NSLGSGPKDSIYSLAMNQTGT 184 (735)
T ss_pred hhhhcccchheeeeecccCc-eeEEecCCCccEEEEEccCcch--hhhhhcccccc---ccCCCCCccceeeeecCCcce
Confidence 267889999999999 7776 8999999999999999998742 01112221110 111237788999999999998
Q ss_pred EEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc
Q 010206 356 HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 356 ~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
.+++|+- +.|++||.++ .+.+-.+.+|... |..+..++||..++++|.||+|++||+....++
T Consensus 185 ~ivsGgtek~lr~wDprt-~~kimkLrGHTdN---------------Vr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl 248 (735)
T KOG0308|consen 185 IIVSGGTEKDLRLWDPRT-CKKIMKLRGHTDN---------------VRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCL 248 (735)
T ss_pred EEEecCcccceEEecccc-ccceeeeeccccc---------------eEEEEEcCCCCeEeecCCCceEEeeecccccee
Confidence 8888775 9999999998 7777788899866 348899999999999999999999999976444
Q ss_pred eeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 435 STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 435 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.++..|.+.++++..+|+-..+.+|+.||.|..
T Consensus 249 -~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~ 281 (735)
T KOG0308|consen 249 -ATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYR 281 (735)
T ss_pred -eeEEeccCceEEEeeCCCcceEEecCCCCcEEe
Confidence 789999999999999999999999999999998
No 124
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.6e-24 Score=188.31 Aligned_cols=294 Identities=14% Similarity=0.167 Sum_probs=211.9
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccc
Q 010206 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (515)
-.++|+++.|+|....|++++.||+++||.++..... .+.++.--. .
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~---------------------~lqS~~l~~------------f 258 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP---------------------KLQSIHLEK------------F 258 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccCh---------------------hheeeeecc------------C
Confidence 3578999999999999999999999999999866531 112222222 5
Q ss_pred eeEEEEEeecCCCc-EEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 114 KINKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 114 ~v~~l~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
+|.+.+|.| +|. .+++++....+..||+.+.+..++......+. ..+. ....+++++.+
T Consensus 259 Pi~~a~f~p--~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~-----~~~e-------~FeVShd~~fi------ 318 (514)
T KOG2055|consen 259 PIQKAEFAP--NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEE-----KSME-------RFEVSHDSNFI------ 318 (514)
T ss_pred ccceeeecC--CCceEEEecccceEEEEeeccccccccccCCCCccc-----chhh-------eeEecCCCCeE------
Confidence 699999965 565 88999999999999999988766654433221 1111 56778888888
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
+..+..|.|.+.. ..+.+. ... -.-.+.|..++|+.+++.|+++ .+|.|.+||++......+.
T Consensus 319 ------a~~G~~G~I~lLh--akT~el--i~s------~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf 382 (514)
T KOG2055|consen 319 ------AIAGNNGHIHLLH--AKTKEL--ITS------FKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRF 382 (514)
T ss_pred ------EEcccCceEEeeh--hhhhhh--hhe------eeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEE
Confidence 8999999999755 222221 111 1234778999999999988886 8999999999987555433
Q ss_pred ecccCccccccCCc--eEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 272 VDVKPANMEDLTEV--ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 272 ~~~~~~~~~~~~~~--i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
. ..+. -++++.++++ .+||+|+..|.|.|||..+... ...|.+...+......|++++
T Consensus 383 ~---------D~G~v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~----------s~~PkPik~~dNLtt~Itsl~ 442 (514)
T KOG2055|consen 383 V---------DDGSVHGTSLCISLNG-SYLATGSDSGIVNIYDGNSCFA----------STNPKPIKTVDNLTTAITSLQ 442 (514)
T ss_pred e---------ecCccceeeeeecCCC-ceEEeccCcceEEEeccchhhc----------cCCCCchhhhhhhheeeeeee
Confidence 2 1222 3577888998 8999999999999999765321 112222333445567899999
Q ss_pred EccCCCEEEEEcC---CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEE
Q 010206 350 FARNGRHILSRDY---MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 426 (515)
Q Consensus 350 ~s~~~~~l~s~~~---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw 426 (515)
|+||.+.|+.++. ..+++-.+.+ ......+... +..+..|++++|||.|.+||.|..+|++.+|
T Consensus 443 Fn~d~qiLAiaS~~~knalrLVHvPS-~TVFsNfP~~------------n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~ 509 (514)
T KOG2055|consen 443 FNHDAQILAIASRVKKNALRLVHVPS-CTVFSNFPTS------------NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLF 509 (514)
T ss_pred eCcchhhhhhhhhccccceEEEeccc-eeeeccCCCC------------CCcccceEEEEecCCCceEEeecCCCceeeE
Confidence 9999999998763 7888877764 2222222222 2334457799999999999999999999999
Q ss_pred ecC
Q 010206 427 GCS 429 (515)
Q Consensus 427 ~~~ 429 (515)
.+.
T Consensus 510 kL~ 512 (514)
T KOG2055|consen 510 KLH 512 (514)
T ss_pred eec
Confidence 875
No 125
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.1e-24 Score=180.57 Aligned_cols=297 Identities=16% Similarity=0.276 Sum_probs=221.5
Q ss_pred ceeeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccC
Q 010206 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (515)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 169 (515)
+++..++.+|. ..|..++-- .....+.+++.|.+-+||.++++++....
T Consensus 138 ~~lvre~~GHk------------DGiW~Vaa~--~tqpi~gtASADhTA~iWs~Esg~CL~~Y----------------- 186 (481)
T KOG0300|consen 138 FRLVRELEGHK------------DGIWHVAAD--STQPICGTASADHTARIWSLESGACLATY----------------- 186 (481)
T ss_pred Eeehhhhcccc------------cceeeehhh--cCCcceeecccccceeEEeeccccceeee-----------------
Confidence 34455666776 778888773 33447778888888999988887643332
Q ss_pred CCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEE
Q 010206 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF 249 (515)
Q Consensus 170 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 249 (515)
.+|.+.|+++.|++.+.++
T Consensus 187 -------------------------------------------------------------~GH~GSVNsikfh~s~~L~ 205 (481)
T KOG0300|consen 187 -------------------------------------------------------------TGHTGSVNSIKFHNSGLLL 205 (481)
T ss_pred -------------------------------------------------------------cccccceeeEEeccccceE
Confidence 4677777777777777777
Q ss_pred EEe-CCCcEEEEeCC----CCC--c--------c------------------cceecccCccccccCCceEEEEEecCCC
Q 010206 250 ISA-DDLRINLWNLE----ISN--Q--------S------------------FNIVDVKPANMEDLTEVITSAEFHPTHC 296 (515)
Q Consensus 250 ~s~-~d~~i~iwd~~----~~~--~--------~------------------~~~~~~~~~~~~~~~~~i~~i~~~p~~~ 296 (515)
+++ .|++..||... .++ . . -..+..+.-.+.+|.+.|.+..|...+
T Consensus 206 lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg- 284 (481)
T KOG0300|consen 206 LTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG- 284 (481)
T ss_pred EEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc-
Confidence 776 67777777521 000 0 0 000001112567899999999999888
Q ss_pred cEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCC
Q 010206 297 NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSG 375 (515)
Q Consensus 297 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~ 375 (515)
..+++++.|++..+||++++..+. .+.||....+.++-+|..+++++.+. .+.++||++..-.
T Consensus 285 ~Q~vTaSWDRTAnlwDVEtge~v~----------------~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~ 348 (481)
T KOG0300|consen 285 QQMVTASWDRTANLWDVETGEVVN----------------ILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQ 348 (481)
T ss_pred ceeeeeeccccceeeeeccCceec----------------cccCcchhccccccCCcceEEEEeccCceeEeccchhhcc
Confidence 899999999999999999998642 37888899999999999999999875 9999999996556
Q ss_pred CeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCC
Q 010206 376 PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP 455 (515)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 455 (515)
.+..|.+|... |+++.|..|. .+++|++|.+|++||+++-...+.++. ..++++.++++..++
T Consensus 349 sV~VFQGHtdt---------------VTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~ 411 (481)
T KOG0300|consen 349 SVAVFQGHTDT---------------VTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHP 411 (481)
T ss_pred eeeeecccccc---------------eeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCc
Confidence 77889999876 5689998665 488999999999999997655544443 457889999999999
Q ss_pred eeEeecCCCeEEE--ecCCCCCccccCC-ccccccCCeeEEEEcCC---CCEEEEEcCCcEEEEe
Q 010206 456 SRPLGSLSGVVRR--VKGADNSALDANG-NAFDFSMKLLHLAWHPS---ENSIACAASNSLYMYY 514 (515)
Q Consensus 456 ~l~s~~~d~~v~l--~~~~~~~~~~~~~-~~~~~~~~i~~~~~s~~---~~~la~~~~~~~~i~~ 514 (515)
.++.--.+..||| +.|..+.+ +.. ...+|...|.+++|..+ .+++.+|-+..++=|+
T Consensus 412 iIAiPhDNRqvRlfDlnG~RlaR--lPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 412 IIAIPHDNRQVRLFDLNGNRLAR--LPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred eEEeccCCceEEEEecCCCcccc--CCcccccccceeeeeeeccccCcccccccccccceeeeeE
Confidence 9999999999999 55555542 222 23468889999999865 4566677777777775
No 126
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.5e-25 Score=203.01 Aligned_cols=292 Identities=16% Similarity=0.209 Sum_probs=216.7
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccc
Q 010206 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (515)
-.....+|+.+++-..++.+++. .++||.+........+ . ..+.... ...-
T Consensus 38 ~k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~-----------------~--~~~k~kq---------n~~~ 88 (839)
T KOG0269|consen 38 LKAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKC-----------------N--HRFKTKQ---------NKFY 88 (839)
T ss_pred cccccceEeecCCcceeEEeccc-ceeeEeeCcccCCcce-----------------e--eeccccc---------ceee
Confidence 34677889999998889888766 6889987654422111 0 1111100 1114
Q ss_pred eeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccC
Q 010206 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (515)
Q Consensus 114 ~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~ 193 (515)
.+..+.|. +-+.++|++++..|.|.+||+......+ .+
T Consensus 89 S~~DVkW~-~~~~NlIAT~s~nG~i~vWdlnk~~rnk----------------------------------~l------- 126 (839)
T KOG0269|consen 89 SAADVKWG-QLYSNLIATCSTNGVISVWDLNKSIRNK----------------------------------LL------- 126 (839)
T ss_pred ehhhcccc-cchhhhheeecCCCcEEEEecCccccch----------------------------------hh-------
Confidence 57778887 5566799999999999999987521000 00
Q ss_pred CCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC-CCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 194 SNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 194 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
. .+..|...++++.|++. ..+|++| .||+|++||++..+...
T Consensus 127 --------------~--------------------~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~-- 170 (839)
T KOG0269|consen 127 --------------T--------------------VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS-- 170 (839)
T ss_pred --------------h--------------------HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc--
Confidence 0 03678899999999985 5567777 89999999999766442
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
++.+..+.|+.++|+|..+..|+++...|.+++||+|....+.. .+..|.++|.++.|+
T Consensus 171 ------t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~---------------k~~AH~GpV~c~nwh 229 (839)
T KOG0269|consen 171 ------TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK---------------KLTAHNGPVLCLNWH 229 (839)
T ss_pred ------cccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHH---------------HhhcccCceEEEeec
Confidence 55667889999999998778999999999999999998664421 267899999999999
Q ss_pred cCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCE-EEEec--CCCcEEEEe
Q 010206 352 RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR-VATGS--YSNLFRVFG 427 (515)
Q Consensus 352 ~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~s--~dg~i~iw~ 427 (515)
|++.+||+|+. +.|+|||+.. .+.......+. +..+..+.|-|+..+ |++++ .|-.|+|||
T Consensus 230 Pnr~~lATGGRDK~vkiWd~t~-~~~~~~~tInT--------------iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWD 294 (839)
T KOG0269|consen 230 PNREWLATGGRDKMVKIWDMTD-SRAKPKHTINT--------------IAPVGRVKWRPARSYHLATCSMVVDTSVHVWD 294 (839)
T ss_pred CCCceeeecCCCccEEEEeccC-CCccceeEEee--------------cceeeeeeeccCccchhhhhhccccceEEEEe
Confidence 99999999875 9999999984 33222222222 223558999998775 66665 688999999
Q ss_pred cCCCCcceeeeccCCCceeeEEECC-CCCeeEeecCCCeEEE
Q 010206 428 CSEGSAESTTLEASKNPMRRQVQTP-SRPSRPLGSLSGVVRR 468 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~l 468 (515)
++..--...++..|.+.++.++|.. +...+.+++.|++|..
T Consensus 295 vrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 295 VRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred eccccccceeeeccCccccceeccCCCceeeEeecCccHHHH
Confidence 9976555589999999999999954 5668999999999886
No 127
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.2e-23 Score=174.21 Aligned_cols=270 Identities=13% Similarity=0.213 Sum_probs=204.0
Q ss_pred eEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEEEeecCCCcE
Q 010206 49 HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSAL 128 (515)
Q Consensus 49 ~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~ 128 (515)
.|++|+....|.=+++.-.. ..+.-...|.+...-.+++|. ++|++++. + +.+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~-----------~~~~~s~~~~l~~lF~~~aH~------------~sitavAV--s--~~~ 55 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEP-----------KGCTDSVKPTLKPLFAFSAHA------------GSITALAV--S--GPY 55 (362)
T ss_pred eEEEeeeeeEEEEEEeccCc-----------cccccccceeeeccccccccc------------cceeEEEe--c--cee
Confidence 36778888777777764322 111122334444555678888 99999998 3 569
Q ss_pred EEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEE
Q 010206 129 YLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLR 208 (515)
Q Consensus 129 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~ 208 (515)
+++|+.|-+|+|||++..+....
T Consensus 56 ~aSGssDetI~IYDm~k~~qlg~--------------------------------------------------------- 78 (362)
T KOG0294|consen 56 VASGSSDETIHIYDMRKRKQLGI--------------------------------------------------------- 78 (362)
T ss_pred EeccCCCCcEEEEeccchhhhcc---------------------------------------------------------
Confidence 99999999999999987542111
Q ss_pred eeeeeecccccccccceeeeeeccCcCCeEEEEecCCCC--EEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCc
Q 010206 209 LPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE--TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV 285 (515)
Q Consensus 209 i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 285 (515)
+..|.+.|+++.|.+.-. .|++| +||.|.+|+........ .+.+|.+.
T Consensus 79 ---------------------ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~--------slK~H~~~ 129 (362)
T KOG0294|consen 79 ---------------------LLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLK--------SLKAHKGQ 129 (362)
T ss_pred ---------------------eeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEee--------eecccccc
Confidence 246789999999988764 67777 99999999998664332 67889999
Q ss_pred eEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeE
Q 010206 286 ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTL 365 (515)
Q Consensus 286 i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i 365 (515)
|+.++.+|.+ ++-++-+.|+.+++||+-+|+.- ..+... ..-+.+.|+|.|.+++.+....|
T Consensus 130 Vt~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~a----~v~~L~-------------~~at~v~w~~~Gd~F~v~~~~~i 191 (362)
T KOG0294|consen 130 VTDLSIHPSG-KLALSVGGDQVLRTWNLVRGRVA----FVLNLK-------------NKATLVSWSPQGDHFVVSGRNKI 191 (362)
T ss_pred cceeEecCCC-ceEEEEcCCceeeeehhhcCccc----eeeccC-------------CcceeeEEcCCCCEEEEEeccEE
Confidence 9999999999 89999999999999999887632 111111 22345999999999988877899
Q ss_pred EEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCce
Q 010206 366 KLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPM 445 (515)
Q Consensus 366 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v 445 (515)
-+|.+.+ ......+..... +.++.|. ++..|++|.+|+.|.+||..+. .....+.+|...|
T Consensus 192 ~i~q~d~-A~v~~~i~~~~r----------------~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~AH~~RV 252 (362)
T KOG0294|consen 192 DIYQLDN-ASVFREIENPKR----------------ILCATFL-DGSELLVGGDNEWISLKDTDSD-TPLTEFLAHENRV 252 (362)
T ss_pred EEEeccc-HhHhhhhhcccc----------------ceeeeec-CCceEEEecCCceEEEeccCCC-ccceeeecchhhe
Confidence 9999985 444444432211 2255554 6778999999999999999875 4558899999999
Q ss_pred eeEEE--CCCCCeeEeecCCCeEEE
Q 010206 446 RRQVQ--TPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 446 ~~~~~--~~~~~~l~s~~~d~~v~l 468 (515)
..+.+ .|++.+|+++|.||.|++
T Consensus 253 K~i~~~~~~~~~~lvTaSSDG~I~v 277 (362)
T KOG0294|consen 253 KDIASYTNPEHEYLVTASSDGFIKV 277 (362)
T ss_pred eeeEEEecCCceEEEEeccCceEEE
Confidence 99984 578899999999999999
No 128
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.8e-22 Score=183.87 Aligned_cols=414 Identities=13% Similarity=0.150 Sum_probs=270.6
Q ss_pred cccccchhhhhcccccccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCcccee
Q 010206 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY 92 (515)
Q Consensus 13 ~~~~w~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (515)
.-.+|++...... . ..-...+.|.+++.+|.+..++.|+.||.+..++...++.. +
T Consensus 91 ~i~EwDl~~lk~~--~-~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~---------------------~ 146 (691)
T KOG2048|consen 91 SITEWDLHTLKQK--Y-NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKIT---------------------Y 146 (691)
T ss_pred eEEEEecccCcee--E-EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEE---------------------E
Confidence 4456777653211 1 12235679999999999999999999997777776655532 4
Q ss_pred eeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCC
Q 010206 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (515)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (515)
...|.-.+ ++|.++.| ++++..+++|+.||.|++||+..+....+...............++
T Consensus 147 ~r~l~rq~------------sRvLslsw--~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVW---- 208 (691)
T KOG2048|consen 147 KRSLMRQK------------SRVLSLSW--NPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVW---- 208 (691)
T ss_pred Eeeccccc------------ceEEEEEe--cCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEE----
Confidence 44444444 88999999 5667789999999999999999988766554443322221222333
Q ss_pred cCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe
Q 010206 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 252 (515)
Q Consensus 173 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 252 (515)
++.+..++.. ++|...|++++|| ... +...+. ...|...|.+++..+++..++++
T Consensus 209 ---Sv~~Lrd~tI-------------~sgDS~G~V~FWd--~~~------gTLiqS-~~~h~adVl~Lav~~~~d~vfsa 263 (691)
T KOG2048|consen 209 ---SVLFLRDSTI-------------ASGDSAGTVTFWD--SIF------GTLIQS-HSCHDADVLALAVADNEDRVFSA 263 (691)
T ss_pred ---EEEEeecCcE-------------EEecCCceEEEEc--ccC------cchhhh-hhhhhcceeEEEEcCCCCeEEEc
Confidence 5555555554 8999999999999 222 122222 36788999999999998888887
Q ss_pred -CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccc---------
Q 010206 253 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH--------- 322 (515)
Q Consensus 253 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~--------- 322 (515)
.|+.|..+...+.+..... . .....|...+.+++..++ .+++|+.|..+.+--.+..+.....
T Consensus 264 Gvd~~ii~~~~~~~~~~wv~--~--~~r~~h~hdvrs~av~~~---~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~ 336 (691)
T KOG2048|consen 264 GVDPKIIQYSLTTNKSEWVI--N--SRRDLHAHDVRSMAVIEN---ALISGGRDFTLAICSSREFKNMDHRQKNLFPASD 336 (691)
T ss_pred cCCCceEEEEecCCccceee--e--ccccCCcccceeeeeecc---eEEecceeeEEEEccccccCchhhhccccccccc
Confidence 7999999988766542211 1 234568888999999874 7889999988877655432111000
Q ss_pred ----------cceeeecc---------------CCC-ccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCC
Q 010206 323 ----------SKLFEEQE---------------APG-TRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGP 376 (515)
Q Consensus 323 ----------~~~~~~~~---------------~~~-~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~ 376 (515)
...+..+. .+. .......-...|.+.+.||+|++++.+.-..++||.+.... .
T Consensus 337 ~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~-~ 415 (691)
T KOG2048|consen 337 RVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDP-N 415 (691)
T ss_pred eeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCc-c
Confidence 00000000 000 00011112356899999999999999887789999998533 3
Q ss_pred eeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEec-CCCcEEEEecCCCCcce-eee--ccCCCceeeEEECC
Q 010206 377 VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAES-TTL--EASKNPMRRQVQTP 452 (515)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s-~dg~i~iw~~~~~~~~~-~~~--~~~~~~v~~~~~~~ 452 (515)
++......... ...++..+.|+-|++.++.++ .+..+.++++.+..... ..+ ++...+++.+..++
T Consensus 416 vk~~~v~~~~~----------~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ss 485 (691)
T KOG2048|consen 416 VKVINVDDVPL----------ALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSS 485 (691)
T ss_pred eeEEEeccchh----------hhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcC
Confidence 33332222111 111234688898998888777 77888888887653221 111 24567899999999
Q ss_pred CCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcC-CCCEEEEEc-CCcEEEEe
Q 010206 453 SRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHP-SENSIACAA-SNSLYMYY 514 (515)
Q Consensus 453 ~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~la~~~-~~~~~i~~ 514 (515)
+|.|+|..+.+|.|.+++......-.+. ......|++++|+| +-+.|+++. +++++-|+
T Consensus 486 dG~yiaa~~t~g~I~v~nl~~~~~~~l~---~rln~~vTa~~~~~~~~~~lvvats~nQv~efd 546 (691)
T KOG2048|consen 486 DGNYIAAISTRGQIFVYNLETLESHLLK---VRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFD 546 (691)
T ss_pred CCCEEEEEeccceEEEEEcccceeecch---hccCcceeeeeccccccCcEEEEecCCeEEEEe
Confidence 9999999999999998332222110111 12357899999995 456677665 56677765
No 129
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=7.9e-25 Score=192.15 Aligned_cols=284 Identities=12% Similarity=0.133 Sum_probs=212.8
Q ss_pred cccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeE-EEeeccCCcccCCCC-CCccCCCCcCCCceeecCC
Q 010206 106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK-KVFDWNVHPEKAAGN-GPIFGSHVSAIPKSYMANG 183 (515)
Q Consensus 106 ~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~g 183 (515)
++.+.|.+-|.++.+ +...+++++|+. |.|+|||+....-+ .+..+. .+.. ..+. +..+.|||
T Consensus 413 ~~tL~HGEvVcAvtI--S~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLd-----cl~rdnyiR-------SckL~pdg 477 (705)
T KOG0639|consen 413 INTLAHGEVVCAVTI--SNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLD-----CLNRDNYIR-------SCKLLPDG 477 (705)
T ss_pred hhhhccCcEEEEEEe--cCCcceeEecCC-CeEEEeeccCCCCCCcccccc-----ccCccccee-------eeEecCCC
Confidence 455677788999999 455678888775 88999999864211 111111 1111 1222 67889999
Q ss_pred CccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeC
Q 010206 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNL 262 (515)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~ 262 (515)
+.| ++|+...++.||| +........ ..+........+++.+||.+..+++ .||.|.|||+
T Consensus 478 rtL------------ivGGeastlsiWD--LAapTprik-----aeltssapaCyALa~spDakvcFsccsdGnI~vwDL 538 (705)
T KOG0639|consen 478 RTL------------IVGGEASTLSIWD--LAAPTPRIK-----AELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDL 538 (705)
T ss_pred ceE------------Eeccccceeeeee--ccCCCcchh-----hhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEc
Confidence 999 9999999999999 333222111 1122233456778999999998888 9999999999
Q ss_pred CCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccc
Q 010206 263 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 342 (515)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (515)
...... +.+++|.+.+.||.++++| ..|-+|+-|.++|.||++.+....++. -.
T Consensus 539 hnq~~V--------rqfqGhtDGascIdis~dG-tklWTGGlDntvRcWDlregrqlqqhd-----------------F~ 592 (705)
T KOG0639|consen 539 HNQTLV--------RQFQGHTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQLQQHD-----------------FS 592 (705)
T ss_pred ccceee--------ecccCCCCCceeEEecCCC-ceeecCCCccceeehhhhhhhhhhhhh-----------------hh
Confidence 865433 3789999999999999999 899999999999999999987644311 12
Q ss_pred cceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCC
Q 010206 343 ASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 421 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg 421 (515)
+.|.++..+|.+.+|+.|-. +.+.|.... +.....+..|+.. |.++.|.+-|+++++.+.|+
T Consensus 593 SQIfSLg~cP~~dWlavGMens~vevlh~s--kp~kyqlhlheSc---------------VLSlKFa~cGkwfvStGkDn 655 (705)
T KOG0639|consen 593 SQIFSLGYCPTGDWLAVGMENSNVEVLHTS--KPEKYQLHLHESC---------------VLSLKFAYCGKWFVSTGKDN 655 (705)
T ss_pred hhheecccCCCccceeeecccCcEEEEecC--CccceeecccccE---------------EEEEEecccCceeeecCchh
Confidence 57999999999999999976 777777665 4444555556554 56999999999999999999
Q ss_pred cEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 422 LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 422 ~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.+..|...-|..+.+. ...++|.+..++-+.+++++||.|+...+
T Consensus 656 lLnawrtPyGasiFqs--kE~SsVlsCDIS~ddkyIVTGSGdkkATV 700 (705)
T KOG0639|consen 656 LLNAWRTPYGASIFQS--KESSSVLSCDISFDDKYIVTGSGDKKATV 700 (705)
T ss_pred hhhhccCccccceeec--cccCcceeeeeccCceEEEecCCCcceEE
Confidence 9999999877433221 33578899999999999999999976555
No 130
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=1.1e-24 Score=191.27 Aligned_cols=288 Identities=15% Similarity=0.243 Sum_probs=216.8
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
..+.|.+-|.++.+|...+++.||+. |.|+|||+...... .|... +.. +
T Consensus 414 ~tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k----------------~Pvsq----Ldc----------l 462 (705)
T KOG0639|consen 414 NTLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNK----------------SPVSQ----LDC----------L 462 (705)
T ss_pred hhhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCC----------------Ccccc----ccc----------c
Confidence 35678999999999999999999985 57999998754321 11111 111 1
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
.-+.-|+++.. .+|++.|++|+.-.++.|||+......-..+.. +....|..++.+||.+..
T Consensus 463 ~rdnyiRSckL--~pdgrtLivGGeastlsiWDLAapTprikaelt-------------ssapaCyALa~spDakvc--- 524 (705)
T KOG0639|consen 463 NRDNYIRSCKL--LPDGRTLIVGGEASTLSIWDLAAPTPRIKAELT-------------SSAPACYALAISPDAKVC--- 524 (705)
T ss_pred CcccceeeeEe--cCCCceEEeccccceeeeeeccCCCcchhhhcC-------------CcchhhhhhhcCCcccee---
Confidence 11255788888 567889999999999999999875433222211 122234478999999988
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
++++.||.|.||| +.+. ...+. +.+|...+.||.+++||..|-+| -|.+|+.||++++++.
T Consensus 525 ---------FsccsdGnI~vwD--Lhnq------~~Vrq-fqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrql 586 (705)
T KOG0639|consen 525 ---------FSCCSDGNIAVWD--LHNQ------TLVRQ-FQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL 586 (705)
T ss_pred ---------eeeccCCcEEEEE--cccc------eeeec-ccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhh
Confidence 9999999999999 4442 22333 58999999999999999999998 6999999999988765
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
.+ ......|.++-.+|++ .+++.|-.++.+.+-....... ..+..|.+.|.++
T Consensus 587 qq---------hdF~SQIfSLg~cP~~-dWlavGMens~vevlh~skp~k-----------------yqlhlheScVLSl 639 (705)
T KOG0639|consen 587 QQ---------HDFSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSKPEK-----------------YQLHLHESCVLSL 639 (705)
T ss_pred hh---------hhhhhhheecccCCCc-cceeeecccCcEEEEecCCccc-----------------eeecccccEEEEE
Confidence 32 2246789999999999 8999999999988877654331 1245577899999
Q ss_pred EEccCCCEEEE-EcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 349 KFARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 349 ~~s~~~~~l~s-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
.|.+.|+++++ |-|+.+..|.... +..+...+.. ..|.++.+|.|.+||+||+.|....+|.
T Consensus 640 KFa~cGkwfvStGkDnlLnawrtPy-GasiFqskE~----------------SsVlsCDIS~ddkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 640 KFAYCGKWFVSTGKDNLLNAWRTPY-GASIFQSKES----------------SSVLSCDISFDDKYIVTGSGDKKATVYE 702 (705)
T ss_pred EecccCceeeecCchhhhhhccCcc-ccceeecccc----------------CcceeeeeccCceEEEecCCCcceEEEE
Confidence 99999999998 5568999999875 4433332211 1256999999999999999999888887
Q ss_pred c
Q 010206 428 C 428 (515)
Q Consensus 428 ~ 428 (515)
+
T Consensus 703 V 703 (705)
T KOG0639|consen 703 V 703 (705)
T ss_pred E
Confidence 5
No 131
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.5e-23 Score=194.85 Aligned_cols=274 Identities=15% Similarity=0.207 Sum_probs=206.1
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
..|....+.|+|.|+|++|.+++.||.|++|+....... |+.. .-+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~-----------------P~ti-----~~~g----------- 56 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE-----------------PETI-----DISG----------- 56 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC-----------------Cchh-----hccC-----------
Confidence 468899999999999999999999999999997554211 1111 1122
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
..|.+++- . +.+|++++.+++|.+|.+.++....+
T Consensus 57 -~~v~~ia~--~--s~~f~~~s~~~tv~~y~fps~~~~~i---------------------------------------- 91 (933)
T KOG1274|consen 57 -ELVSSIAC--Y--SNHFLTGSEQNTVLRYKFPSGEEDTI---------------------------------------- 91 (933)
T ss_pred -ceeEEEee--c--ccceEEeeccceEEEeeCCCCCccce----------------------------------------
Confidence 66888776 3 44899999999999999877652111
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccc
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 270 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 270 (515)
+....-++++++++.+|++++.| +|-.|++-+........
T Consensus 92 --------------------------------------L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~- 132 (933)
T KOG1274|consen 92 --------------------------------------LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEK- 132 (933)
T ss_pred --------------------------------------eeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhe-
Confidence 12233678899999999999998 89999999998776554
Q ss_pred eecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEE
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 350 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (515)
.+++|.++|.++.|+|++ .+||+.+-||.+++||+.++.+............. .....+..++|
T Consensus 133 -------~lrgh~apVl~l~~~p~~-~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~--------~~s~i~~~~aW 196 (933)
T KOG1274|consen 133 -------VLRGHDAPVLQLSYDPKG-NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEF--------ILSRICTRLAW 196 (933)
T ss_pred -------eecccCCceeeeeEcCCC-CEEEEEecCceEEEEEcccchhhhhcccCCccccc--------cccceeeeeee
Confidence 678899999999999999 99999999999999999988754322211111110 01356888999
Q ss_pred ccC-CCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecC
Q 010206 351 ARN-GRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 351 s~~-~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~ 429 (515)
+|+ |.+++.+.++.|++|+... ......+........ +..+.|+|.|+|||+++.||.|.|||.+
T Consensus 197 ~Pk~g~la~~~~d~~Vkvy~r~~-we~~f~Lr~~~~ss~-------------~~~~~wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 197 HPKGGTLAVPPVDNTVKVYSRKG-WELQFKLRDKLSSSK-------------FSDLQWSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred cCCCCeEEeeccCCeEEEEccCC-ceeheeecccccccc-------------eEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence 998 5555667889999999985 666666654332211 3479999999999999999999999998
Q ss_pred CCCcceeeeccCCCceeeEEECCCCCee
Q 010206 430 EGSAESTTLEASKNPMRRQVQTPSRPSR 457 (515)
Q Consensus 430 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l 457 (515)
+- .-......|.+++|.|+...+
T Consensus 263 t~-----~~~~~~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 263 TH-----ERHEFKRAVCCEAWKPNANAI 285 (933)
T ss_pred cc-----hhccccceeEEEecCCCCCee
Confidence 62 113345678899999887654
No 132
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=1.5e-23 Score=191.33 Aligned_cols=280 Identities=12% Similarity=0.157 Sum_probs=217.8
Q ss_pred ccceeeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCc
Q 010206 88 PEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPI 167 (515)
Q Consensus 88 ~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 167 (515)
|.|++.+++.+|. ..|..++.. ++..+++++.||++++|+-..++......
T Consensus 2 ~~Y~ls~~l~gH~------------~DVr~v~~~---~~~~i~s~sRd~t~~vw~~~~~~~l~~~~-------------- 52 (745)
T KOG0301|consen 2 PQYKLSHELEGHK------------SDVRAVAVT---DGVCIISGSRDGTVKVWAKKGKQYLETHA-------------- 52 (745)
T ss_pred CcceeEEEeccCc------------cchheeEec---CCeEEeecCCCCceeeeeccCccccccee--------------
Confidence 4677888899998 778888873 34579999999999999976654322111
Q ss_pred cCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEE-EEecC-C
Q 010206 168 FGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINS-ISNNS-D 245 (515)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~ 245 (515)
..+|.+.|.+ +++-+ +
T Consensus 53 --------------------------------------------------------------~~~~~g~i~~~i~y~e~~ 70 (745)
T KOG0301|consen 53 --------------------------------------------------------------FEGPKGFIANSICYAESD 70 (745)
T ss_pred --------------------------------------------------------------cccCcceeeccceecccc
Confidence 1234444444 66654 3
Q ss_pred CCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccc
Q 010206 246 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK 324 (515)
Q Consensus 246 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 324 (515)
+-.+++| .|.+|.+|.+....+.. .+.+|+..|.++....++ . +++|+.|.++++|-......
T Consensus 71 ~~~l~~g~~D~~i~v~~~~~~~P~~--------~LkgH~snVC~ls~~~~~-~-~iSgSWD~TakvW~~~~l~~------ 134 (745)
T KOG0301|consen 71 KGRLVVGGMDTTIIVFKLSQAEPLY--------TLKGHKSNVCSLSIGEDG-T-LISGSWDSTAKVWRIGELVY------ 134 (745)
T ss_pred CcceEeecccceEEEEecCCCCchh--------hhhccccceeeeecCCcC-c-eEecccccceEEecchhhhc------
Confidence 4446676 89999999998776654 778999999999988887 4 99999999999998754321
Q ss_pred eeeeccCCCccccccccccceeEEEEccCCCEEEEE-cCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCcccee
Q 010206 325 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF 403 (515)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 403 (515)
.+.+|..+|.+++.-|++ .+++| .|.+|++|.- ++.++++.+|...++
T Consensus 135 ------------~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~---~~~l~tf~gHtD~VR--------------- 183 (745)
T KOG0301|consen 135 ------------SLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG---GTLLKTFSGHTDCVR--------------- 183 (745)
T ss_pred ------------ccCCcchheeeeeecCCC-cEEeccCcceeeeccC---Cchhhhhccchhhee---------------
Confidence 267888999999999988 55565 4699999975 678899999987743
Q ss_pred eEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCcc
Q 010206 404 ECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNA 483 (515)
Q Consensus 404 ~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~ 483 (515)
.+++-+++. ++++++||.|++|++. + ..+..+.+|.+-+.++...+++..++++++|+++++++..+.. +.
T Consensus 184 gL~vl~~~~-flScsNDg~Ir~w~~~-g-e~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~------q~ 254 (745)
T KOG0301|consen 184 GLAVLDDSH-FLSCSNDGSIRLWDLD-G-EVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDECV------QV 254 (745)
T ss_pred eeEEecCCC-eEeecCCceEEEEecc-C-ceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCceE------EE
Confidence 788886654 7789999999999994 4 4557899999999999999999999999999999995444222 33
Q ss_pred cccc-CCeeEEEEcCCCCEEEEEcCCcEEEEe
Q 010206 484 FDFS-MKLLHLAWHPSENSIACAASNSLYMYY 514 (515)
Q Consensus 484 ~~~~-~~i~~~~~s~~~~~la~~~~~~~~i~~ 514 (515)
+.+. ..|.++.+-+.|..++.++++-++||+
T Consensus 255 I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT 286 (745)
T KOG0301|consen 255 ITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFT 286 (745)
T ss_pred EecCccceEEEEEeeCCCEEEeccCceEEEEE
Confidence 3343 478999999999888888888899986
No 133
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.6e-23 Score=179.35 Aligned_cols=281 Identities=16% Similarity=0.269 Sum_probs=205.7
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
.+.|+++.|+|... .|++++.|+++++|.+.......+..
T Consensus 213 ~~~I~sv~FHp~~p--lllvaG~d~~lrifqvDGk~N~~lqS-------------------------------------- 252 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP--LLLVAGLDGTLRIFQVDGKVNPKLQS-------------------------------------- 252 (514)
T ss_pred cCCceEEEecCCCc--eEEEecCCCcEEEEEecCccChhhee--------------------------------------
Confidence 37899999977655 99999999999999987653221111
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCC-EEEEe-CCCcEEEEeCCCCCccc
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
+.-...+|.+.+|.|+|+ .++++ ....++.||+.+.+...
T Consensus 253 --------------------------------------~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k 294 (514)
T KOG2055|consen 253 --------------------------------------IHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTK 294 (514)
T ss_pred --------------------------------------eeeccCccceeeecCCCceEEEecccceEEEEeecccccccc
Confidence 112236788999999999 67776 78899999998765331
Q ss_pred ceecccCcccccc-CCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 270 NIVDVKPANMEDL-TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 270 ~~~~~~~~~~~~~-~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
++ .+.++ ...+.....+|++ ++|+..+..|.|.+....+++.+. .+... +.|..+
T Consensus 295 ----~~--~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~----s~Kie-------------G~v~~~ 350 (514)
T KOG2055|consen 295 ----LK--PPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELIT----SFKIE-------------GVVSDF 350 (514)
T ss_pred ----cc--CCCCcccchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhh----eeeec-------------cEEeeE
Confidence 11 22233 3456788899999 899999999999999988877642 23322 679999
Q ss_pred EEccCCCEEEEE-cCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 349 KFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 349 ~~s~~~~~l~s~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
+|+.|++.|++. ++|.|.+||++. ..++.++......- =+++|.|+++.|||+||..|.|.|||
T Consensus 351 ~fsSdsk~l~~~~~~GeV~v~nl~~-~~~~~rf~D~G~v~--------------gts~~~S~ng~ylA~GS~~GiVNIYd 415 (514)
T KOG2055|consen 351 TFSSDSKELLASGGTGEVYVWNLRQ-NSCLHRFVDDGSVH--------------GTSLCISLNGSYLATGSDSGIVNIYD 415 (514)
T ss_pred EEecCCcEEEEEcCCceEEEEecCC-cceEEEEeecCccc--------------eeeeeecCCCceEEeccCcceEEEec
Confidence 999999988775 559999999997 67788877555431 14789999999999999999999999
Q ss_pred cCCC-----CcceeeeccCCCceeeEEECCCCCeeEeecC--CCeEEE-----ecCCCCCccccCCccccccCCeeEEEE
Q 010206 428 CSEG-----SAESTTLEASKNPMRRQVQTPSRPSRPLGSL--SGVVRR-----VKGADNSALDANGNAFDFSMKLLHLAW 495 (515)
Q Consensus 428 ~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--d~~v~l-----~~~~~~~~~~~~~~~~~~~~~i~~~~~ 495 (515)
.++. .+.+..+.--...|+.+.|+++.+.||.+|. +..+|| ......++ ..-..-+.|++|+|
T Consensus 416 ~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP-----~~n~~vg~vtc~aF 490 (514)
T KOG2055|consen 416 GNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFP-----TSNTKVGHVTCMAF 490 (514)
T ss_pred cchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCC-----CCCCcccceEEEEe
Confidence 7642 1222444455678899999999999988876 567777 11111111 00112357899999
Q ss_pred cCCCCEEEEEcCCc-EEEEe
Q 010206 496 HPSENSIACAASNS-LYMYY 514 (515)
Q Consensus 496 s~~~~~la~~~~~~-~~i~~ 514 (515)
||.+.+||+|.+.| +.+|-
T Consensus 491 SP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 491 SPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred cCCCceEEeecCCCceeeEe
Confidence 99999999999765 66763
No 134
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2e-24 Score=199.26 Aligned_cols=237 Identities=16% Similarity=0.230 Sum_probs=183.2
Q ss_pred CeEEEEecC-CCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEec
Q 010206 236 HINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 313 (515)
Q Consensus 236 ~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~ 313 (515)
.+..+.|+. +.++|+++ ..|.|.+||+........+ ..+..|.-.++++.|++..+++|++|+.||.|++||+
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l-----~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~Dl 163 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLL-----TVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDL 163 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhh-----hHhhhhccceeeeeeccCCccEEEecCCCceEEEEee
Confidence 455677875 57788888 7999999999863221111 1567799999999999999999999999999999999
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEcc-CCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccccccc
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLC 391 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 391 (515)
+..+... ++.+....|+.|.|+| .+.+++++.| |.+.+||++.+.++...+..|.+.
T Consensus 164 R~~~S~~----------------t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~Gp----- 222 (839)
T KOG0269|consen 164 RSKKSKS----------------TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGP----- 222 (839)
T ss_pred ecccccc----------------cccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCc-----
Confidence 9865422 2334457899999999 6778888888 999999999888899999999987
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCe-eEeecC--CCeEEE
Q 010206 392 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPS-RPLGSL--SGVVRR 468 (515)
Q Consensus 392 ~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~--d~~v~l 468 (515)
|.++.|+|++.+||||+.|++|+|||+.+........-....|+..+.|-|+.++ ||+++. |-.|++
T Consensus 223 ----------V~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~V 292 (839)
T KOG0269|consen 223 ----------VLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHV 292 (839)
T ss_pred ----------eEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEE
Confidence 5599999999999999999999999998654333333345689999999999886 666655 678888
Q ss_pred ecCCCCCccccC-CccccccCCeeEEEEcC-CCCEEEEEcCCcEE
Q 010206 469 VKGADNSALDAN-GNAFDFSMKLLHLAWHP-SENSIACAASNSLY 511 (515)
Q Consensus 469 ~~~~~~~~~~~~-~~~~~~~~~i~~~~~s~-~~~~la~~~~~~~~ 511 (515)
++-..+. +. .....|...++.++|.. |-..+.+++.|+++
T Consensus 293 WDvrRPY---IP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv 334 (839)
T KOG0269|consen 293 WDVRRPY---IPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTV 334 (839)
T ss_pred Eeecccc---ccceeeeccCccccceeccCCCceeeEeecCccHH
Confidence 4433332 22 23457889999999976 34455566666643
No 135
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.92 E-value=3.2e-23 Score=180.17 Aligned_cols=300 Identities=17% Similarity=0.252 Sum_probs=210.4
Q ss_pred ccccccceEEEEECCCC--CeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccc
Q 010206 31 EVQEVDIISAIEFDKSG--DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g--~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (515)
..-+.++|++++|+|.. +++|+|+..|.|-+||+.+.+. +..-...+..|.
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~-------------------d~d~v~~f~~hs-------- 234 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK-------------------DKDGVYLFTPHS-------- 234 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-------------------ccCceEEeccCC--------
Confidence 44578999999999954 5899999999999999964432 222233466777
Q ss_pred ccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccc
Q 010206 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (515)
Q Consensus 109 ~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~ 188 (515)
.+|.+|.|+|... ..+++++.||+|++-|++......+...
T Consensus 235 ----~~Vs~l~F~P~n~-s~i~ssSyDGtiR~~D~~~~i~e~v~s~---------------------------------- 275 (498)
T KOG4328|consen 235 ----GPVSGLKFSPANT-SQIYSSSYDGTIRLQDFEGNISEEVLSL---------------------------------- 275 (498)
T ss_pred ----ccccceEecCCCh-hheeeeccCceeeeeeecchhhHHHhhc----------------------------------
Confidence 8899999998554 5899999999999999987642221111
Q ss_pred ccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCc
Q 010206 189 NFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
......+.++.|+.+...++.+ .=|...+||+++.+.
T Consensus 276 ------------------------------------------~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s 313 (498)
T KOG4328|consen 276 ------------------------------------------DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGS 313 (498)
T ss_pred ------------------------------------------CccceeeeeccccCCCccEEEeecccceEEEEeecCCc
Confidence 0112345567777777777776 556999999998887
Q ss_pred ccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 347 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (515)
.+. .+.-|...|.+++++|..+.+|++++.|++.+|||+|....... +......|...|.+
T Consensus 314 ~~~-------~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s------------p~lst~~HrrsV~s 374 (498)
T KOG4328|consen 314 EYE-------NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS------------PFLSTLPHRRSVNS 374 (498)
T ss_pred cch-------hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC------------cceecccccceeee
Confidence 554 44558889999999999889999999999999999987543221 01113457789999
Q ss_pred EEEccCCCEEEE-EcCCeEEEEEee---CCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcE
Q 010206 348 IKFARNGRHILS-RDYMTLKLWDIN---MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 423 (515)
Q Consensus 348 ~~~s~~~~~l~s-~~~~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i 423 (515)
..|||.+-.|++ +-|..|+|||.. ....+..++. |...-. .....+...|.|+..++++|..-..|
T Consensus 375 AyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~---------RwlT~fKA~W~P~~~li~vg~~~r~I 444 (498)
T KOG4328|consen 375 AYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTG---------RWLTPFKAAWDPDYNLIVVGRYPRPI 444 (498)
T ss_pred eEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCccc---------ccccchhheeCCCccEEEEeccCcce
Confidence 999996655666 556999999984 2133333333 332211 11123468999999999999999999
Q ss_pred EEEecCCCCcceeeeccC-CCceee-EEECCCCCeeEeec-CCCeEEE
Q 010206 424 RVFGCSEGSAESTTLEAS-KNPMRR-QVQTPSRPSRPLGS-LSGVVRR 468 (515)
Q Consensus 424 ~iw~~~~~~~~~~~~~~~-~~~v~~-~~~~~~~~~l~s~~-~d~~v~l 468 (515)
-|+|-+.+ +.+..+... ...|.+ ..++|-+..+++|+ ..|.|.+
T Consensus 445 Dv~~~~~~-q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~v 491 (498)
T KOG4328|consen 445 DVFDGNGG-QMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYV 491 (498)
T ss_pred eEEcCCCC-EEeeeccCccccccccceeecccccceeccCCccceEEE
Confidence 99998765 433443322 223433 47889888555554 4566666
No 136
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.2e-22 Score=168.40 Aligned_cols=285 Identities=21% Similarity=0.314 Sum_probs=191.6
Q ss_pred eEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEE
Q 010206 38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117 (515)
Q Consensus 38 v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~ 117 (515)
-.|+.|++.|.+||+|+.||.|.|||+.+.. ....+.+|. .+|.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-----------------------iar~lsaH~------------~pi~s 70 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-----------------------IARMLSAHV------------RPITS 70 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-----------------------hhhhhhccc------------cceeE
Confidence 7899999999999999999999999998655 235578887 88999
Q ss_pred EEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCC
Q 010206 118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS 197 (515)
Q Consensus 118 l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 197 (515)
++| +++|..|++++.|..|.+||+..+.+.+...+.
T Consensus 71 l~W--S~dgr~LltsS~D~si~lwDl~~gs~l~rirf~------------------------------------------ 106 (405)
T KOG1273|consen 71 LCW--SRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD------------------------------------------ 106 (405)
T ss_pred EEe--cCCCCEeeeecCCceeEEEeccCCCceeEEEcc------------------------------------------
Confidence 999 678999999999999999999988755544333
Q ss_pred CCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCE--EEEeCCCcEEEEeCCCCCcccceeccc
Q 010206 198 SFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET--FISADDLRINLWNLEISNQSFNIVDVK 275 (515)
Q Consensus 198 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~s~~d~~i~iwd~~~~~~~~~~~~~~ 275 (515)
.+|+...|+|..+. +++--+..-.+-++..+... .+...
T Consensus 107 -------------------------------------spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~--~Lp~d 147 (405)
T KOG1273|consen 107 -------------------------------------SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS--VLPKD 147 (405)
T ss_pred -------------------------------------CccceeeeccccCCeEEEEEecCCcEEEEecCCcee--eccCC
Confidence 44555555553222 22212222233333221111 10000
Q ss_pred CccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCC
Q 010206 276 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 355 (515)
Q Consensus 276 ~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 355 (515)
+ -........+..|.+.| +++++|...|.+.+||..+.+++.. +.... ...|..+.|+..|+
T Consensus 148 ~--d~dln~sas~~~fdr~g-~yIitGtsKGkllv~~a~t~e~vas----~rits-----------~~~IK~I~~s~~g~ 209 (405)
T KOG1273|consen 148 D--DGDLNSSASHGVFDRRG-KYIITGTSKGKLLVYDAETLECVAS----FRITS-----------VQAIKQIIVSRKGR 209 (405)
T ss_pred C--ccccccccccccccCCC-CEEEEecCcceEEEEecchheeeee----eeech-----------heeeeEEEEeccCc
Confidence 0 00011112233688888 9999999999999999998865432 11110 15689999999999
Q ss_pred EEEEE-cCCeEEEEEeeC---CCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEec-CCCcEEEEecCC
Q 010206 356 HILSR-DYMTLKLWDINM---DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSE 430 (515)
Q Consensus 356 ~l~s~-~~~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s-~dg~i~iw~~~~ 430 (515)
+|+.- +|..|+.|+++. .++-...-..|. ....+.+..+ .+++||.+|.|++.++ .-..++||.-..
T Consensus 210 ~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K-~qDvVNk~~W-------k~ccfs~dgeYv~a~s~~aHaLYIWE~~~ 281 (405)
T KOG1273|consen 210 FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHK-LQDVVNKLQW-------KKCCFSGDGEYVCAGSARAHALYIWEKSI 281 (405)
T ss_pred EEEEecCCceEEEEehhhhcccCccCCcChhHH-HHHHHhhhhh-------hheeecCCccEEEeccccceeEEEEecCC
Confidence 99984 569999999862 000000000000 0000011111 2789999999998777 345799999988
Q ss_pred CCcceeeeccCC-CceeeEEECCCCCeeEeecCCCeEEE
Q 010206 431 GSAESTTLEASK-NPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 431 ~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
| .+++.|.+.. ...-.+.|+|-.+.+++- ..|.+++
T Consensus 282 G-sLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~i 318 (405)
T KOG1273|consen 282 G-SLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYI 318 (405)
T ss_pred c-ceeeeecCCchhheeecccccceeeeeec-cCCceEE
Confidence 7 6778898887 667788899999999888 7788888
No 137
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=8.9e-22 Score=180.53 Aligned_cols=293 Identities=11% Similarity=0.101 Sum_probs=189.6
Q ss_pred CCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEEEeecCCC
Q 010206 47 GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS 126 (515)
Q Consensus 47 g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~ 126 (515)
++.+++++.|+.|++||..+++.. ..+..+ ..+.+++|+ +++
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~-----------------------~~~~~~-------------~~~~~l~~~--~dg 42 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVT-----------------------RTFPVG-------------QRPRGITLS--KDG 42 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceE-----------------------EEEECC-------------CCCCceEEC--CCC
Confidence 457889999999999998766532 333333 336778994 556
Q ss_pred cEE-EeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcc
Q 010206 127 ALY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (515)
Q Consensus 127 ~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 205 (515)
..+ ++++.++.|++||..+++......... .+. .+.++|+++.+ ++++..++
T Consensus 43 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---------~~~-------~~~~~~~g~~l-----------~~~~~~~~ 95 (300)
T TIGR03866 43 KLLYVCASDSDTIQVIDLATGEVIGTLPSGP---------DPE-------LFALHPNGKIL-----------YIANEDDN 95 (300)
T ss_pred CEEEEEECCCCeEEEEECCCCcEEEeccCCC---------Ccc-------EEEECCCCCEE-----------EEEcCCCC
Confidence 666 556788999999999887654332211 111 56888999866 13445678
Q ss_pred cEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CC-CcEEEEeCCCCCcccceecccCccccccC
Q 010206 206 SLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD-LRINLWNLEISNQSFNIVDVKPANMEDLT 283 (515)
Q Consensus 206 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 283 (515)
.+.+|| +... .....+ .+...+.+++|+|++++++++ .+ ..+.+||.++.+....+ ...
T Consensus 96 ~l~~~d--~~~~------~~~~~~--~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~---------~~~ 156 (300)
T TIGR03866 96 LVTVID--IETR------KVLAEI--PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV---------LVD 156 (300)
T ss_pred eEEEEE--CCCC------eEEeEe--eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE---------EcC
Confidence 999999 4321 111221 122346789999999999987 44 45777898765432211 122
Q ss_pred CceEEEEEecCCCcEE-EEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEE--
Q 010206 284 EVITSAEFHPTHCNML-AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-- 360 (515)
Q Consensus 284 ~~i~~i~~~p~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-- 360 (515)
..+.+++|+|++ ..| +++..++.|++||+++++..... .+..... .........++|+|++++++.+
T Consensus 157 ~~~~~~~~s~dg-~~l~~~~~~~~~v~i~d~~~~~~~~~~--~~~~~~~-------~~~~~~~~~i~~s~dg~~~~~~~~ 226 (300)
T TIGR03866 157 QRPRFAEFTADG-KELWVSSEIGGTVSVIDVATRKVIKKI--TFEIPGV-------HPEAVQPVGIKLTKDGKTAFVALG 226 (300)
T ss_pred CCccEEEECCCC-CEEEEEcCCCCEEEEEEcCcceeeeee--eeccccc-------ccccCCccceEECCCCCEEEEEcC
Confidence 345789999998 655 45556999999999987643221 0110000 0000123468899999986553
Q ss_pred cCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEe-cCCCcEEEEecCCCCcceeeec
Q 010206 361 DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAESTTLE 439 (515)
Q Consensus 361 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-s~dg~i~iw~~~~~~~~~~~~~ 439 (515)
+++.+.+||+.+ ++....+. +... +++++|+|+|++|+++ +.+|.|.+||+.++ ..+..++
T Consensus 227 ~~~~i~v~d~~~-~~~~~~~~-~~~~---------------~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~-~~~~~~~ 288 (300)
T TIGR03866 227 PANRVAVVDAKT-YEVLDYLL-VGQR---------------VWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL-KVIKSIK 288 (300)
T ss_pred CCCeEEEEECCC-CcEEEEEE-eCCC---------------cceEEECCCCCEEEEEcCCCCeEEEEECCCC-cEEEEEE
Confidence 347899999985 55544432 2211 3489999999999876 46899999999987 4445665
Q ss_pred cCCCceeeEEECC
Q 010206 440 ASKNPMRRQVQTP 452 (515)
Q Consensus 440 ~~~~~v~~~~~~~ 452 (515)
... ..+.++++|
T Consensus 289 ~~~-~~~~~~~~~ 300 (300)
T TIGR03866 289 VGR-LPWGVVVRP 300 (300)
T ss_pred ccc-ccceeEeCC
Confidence 543 346777654
No 138
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=6.6e-25 Score=200.91 Aligned_cols=235 Identities=21% Similarity=0.328 Sum_probs=197.9
Q ss_pred ccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010206 231 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 309 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~ 309 (515)
..|...+.++..-..++.+++| .|..+-+|.+....... .+.+|..+|.++.|++.. .+|+.|+.+|+|+
T Consensus 25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~--------S~~~hespIeSl~f~~~E-~LlaagsasgtiK 95 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT--------SLTGHESPIESLTFDTSE-RLLAAGSASGTIK 95 (825)
T ss_pred hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh--------eeeccCCcceeeecCcch-hhhcccccCCcee
Confidence 5688888898887778889998 78999999987655443 578899999999999998 8999999999999
Q ss_pred EEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccc
Q 010206 310 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRP 388 (515)
Q Consensus 310 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~ 388 (515)
+||+...+.+. .+.+|...+.++.|+|-+.+.++|+ |+.+++||.+. ..+.+.+.+|...
T Consensus 96 ~wDleeAk~vr----------------tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk-~Gc~~~~~s~~~v-- 156 (825)
T KOG0267|consen 96 VWDLEEAKIVR----------------TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK-KGCSHTYKSHTRV-- 156 (825)
T ss_pred eeehhhhhhhh----------------hhhccccCcceeeeccceEEeccccccccceehhhhc-cCceeeecCCcce--
Confidence 99999876532 3678889999999999999999886 49999999996 7888999887655
Q ss_pred cccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 389 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 389 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
|..+.|+|+|+++++|++|..++|||+..| .+...++.|...+..+.++|..-.+++|+.|+++++
T Consensus 157 -------------v~~l~lsP~Gr~v~~g~ed~tvki~d~~ag-k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f 222 (825)
T KOG0267|consen 157 -------------VDVLRLSPDGRWVASGGEDNTVKIWDLTAG-KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRF 222 (825)
T ss_pred -------------eEEEeecCCCceeeccCCcceeeeeccccc-ccccccccccccccccccCchhhhhccCCCCceeee
Confidence 348899999999999999999999999887 566899999999999999999999999999999999
Q ss_pred ecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcE
Q 010206 469 VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSL 510 (515)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~ 510 (515)
|.+...++....-.....|.+.+|+|+++.+++|....+
T Consensus 223 ---~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 223 ---WDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISL 261 (825)
T ss_pred ---eccceeEEeeccCCccCCceeeeecCCceeeecCchhhh
Confidence 332222233322234678999999999999999876543
No 139
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1e-22 Score=168.29 Aligned_cols=293 Identities=14% Similarity=0.214 Sum_probs=198.3
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
.+.+|.+-|+|+.|.+-|+.+|+++.|++|+|||..... ..+.+...++.|+
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s-------------------~~W~~Ts~Wrah~--------- 59 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDS-------------------GTWSCTSSWRAHD--------- 59 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCC-------------------CceEEeeeEEecC---------
Confidence 456899999999999999999999999999999974433 2556777889998
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCC-------eeEEEeeccCCcccCCCCCCccCCCCcCCCceeecC
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-------KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN 182 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 182 (515)
+.|..+.|.+.+=|+.+++++.|+++.||.-... +......+.. .++.+. .+.|.|.
T Consensus 60 ---~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~D------srssV~-------DV~FaP~ 123 (361)
T KOG2445|consen 60 ---GSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVD------SRSSVT-------DVKFAPK 123 (361)
T ss_pred ---CcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeec------CCccee-------EEEecch
Confidence 9999999998888999999999999999976421 1111111111 123333 6777775
Q ss_pred CCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeee------eeccCcCCeEEEEecCC---CCEEEEeC
Q 010206 183 GGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRI------YAHAHDYHINSISNNSD---GETFISAD 253 (515)
Q Consensus 183 g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~---~~~l~s~~ 253 (515)
-.-| .+++++.||.++||+. .+.-....-..... -...+.....|+.|+|. .++|+.|.
T Consensus 124 hlGL----------klA~~~aDG~lRIYEA--~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs 191 (361)
T KOG2445|consen 124 HLGL----------KLAAASADGILRIYEA--PDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGS 191 (361)
T ss_pred hcce----------EEEEeccCcEEEEEec--CCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEc
Confidence 4444 2289999999999982 22111111111111 11346677889999973 66788884
Q ss_pred C------CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCC---cEEEEEecCCeEEEEecCcccccccccc
Q 010206 254 D------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC---NMLAYSSSKGSIRLIDMRQSALCDTHSK 324 (515)
Q Consensus 254 d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~---~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 324 (515)
| +.++||........... ...+.+|..+|+.++|.|+-+ .+||+++.|| |+||.++..........
T Consensus 192 ~e~a~~~~~~~Iye~~e~~rKw~k----va~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee 266 (361)
T KOG2445|consen 192 DEDAPHLNKVKIYEYNENGRKWLK----VAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEE 266 (361)
T ss_pred ccCCccccceEEEEecCCcceeee----ehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhc
Confidence 4 48999987665533221 136778999999999999732 4899999999 99999975321000000
Q ss_pred eeeec---cCC-CccccccccccceeEEEEccCCCEEEEE-cCCeEEEEEeeC--CCCCeeeEeee
Q 010206 325 LFEEQ---EAP-GTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINM--DSGPVATFQVH 383 (515)
Q Consensus 325 ~~~~~---~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~~~~i~iwd~~~--~~~~~~~~~~~ 383 (515)
..... ..+ .....+.+|.+.|..+.|+-.|..|++. +||.|++|.... ..++...+...
T Consensus 267 ~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e 332 (361)
T KOG2445|consen 267 VLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAE 332 (361)
T ss_pred ccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEecc
Confidence 00000 000 1122367899999999999999999985 559999998653 13344444433
No 140
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=6.7e-23 Score=173.86 Aligned_cols=222 Identities=17% Similarity=0.213 Sum_probs=160.5
Q ss_pred ccCcCCeEEEEecCCC-CEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010206 231 HAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 308 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i 308 (515)
.+|...=..++|||-. ..|++| .-+.|++|...++.-.. .+..+.+|...|-.++|+|....+|++|+-||+|
T Consensus 208 ~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~v-----d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsI 282 (440)
T KOG0302|consen 208 NGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKV-----DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSI 282 (440)
T ss_pred cccCccceeeecccccccccccCccccceEeeeeccCceee-----cCccccccccchhhhccCCccCceEEeeecCceE
Confidence 6888888999999932 247778 57889999998765443 2336678999999999999987899999999999
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeC--CCCCeeeEeeecc
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM--DSGPVATFQVHEH 385 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~--~~~~~~~~~~~~~ 385 (515)
+|||+|.+.... ....+.|.+.|+-+.|+.+-.+|++|+| |+++|||++. .++++..|+.|..
T Consensus 283 rIWDiRs~~~~~--------------~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~ 348 (440)
T KOG0302|consen 283 RIWDIRSGPKKA--------------AVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA 348 (440)
T ss_pred EEEEecCCCccc--------------eeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC
Confidence 999999874211 1123567789999999998889999987 9999999985 3678889998887
Q ss_pred ccccccccccCCCccceeeEEEcCC-CCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCC
Q 010206 386 LRPKLCDLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSG 464 (515)
Q Consensus 386 ~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 464 (515)
. |+++.|+|. ...|++++.|..|.+||+....-... ........+.-.|.. +|.
T Consensus 349 p---------------ItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee---~~~~a~~~L~dlPpQ-LLF------ 403 (440)
T KOG0302|consen 349 P---------------ITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEE---IDQEAAEGLQDLPPQ-LLF------ 403 (440)
T ss_pred C---------------eeEEEeccccCceEEeccCCCcEEEEEeeccCChhh---hccccccchhcCCce-eEE------
Confidence 6 669999995 45678888999999999975421100 000000001111110 000
Q ss_pred eEEEecCCCCCccccCCccccccCCeeEEEEcCCCC-EEEEEcCCcEEEEe
Q 010206 465 VVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN-SIACAASNSLYMYY 514 (515)
Q Consensus 465 ~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~la~~~~~~~~i~~ 514 (515)
+ . .-+..|..+.|++.-+ +|++.+.+|+.||.
T Consensus 404 ---V--------------H-qGQke~KevhWH~QiPG~lvsTa~dGfnVfk 436 (440)
T KOG0302|consen 404 ---V--------------H-QGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK 436 (440)
T ss_pred ---E--------------e-cchhHhhhheeccCCCCeEEEecccceeEEE
Confidence 0 0 0145688999999865 55566789999985
No 141
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=1.5e-22 Score=183.01 Aligned_cols=307 Identities=17% Similarity=0.218 Sum_probs=208.3
Q ss_pred ccccceEE--EEECC---CCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccc
Q 010206 33 QEVDIISA--IEFDK---SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (515)
Q Consensus 33 ~h~~~v~~--v~~s~---~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (515)
.|.-++.- ..|++ ....||.+..||.|.++|...... .++-+.+..+..|.
T Consensus 45 ~~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~f-----------------r~ee~~lk~~~aH~------- 100 (720)
T KOG0321|consen 45 NDGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVF-----------------RLEERQLKKPLAHK------- 100 (720)
T ss_pred cCCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhc-----------------chhhhhhccccccc-------
Confidence 34445544 67766 345899999999999999765432 12223334567787
Q ss_pred cccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccc
Q 010206 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (515)
Q Consensus 108 ~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~ 187 (515)
..|..+.|.| ....|++++.|.++++||+.+.++.....
T Consensus 101 -----nAifDl~wap--ge~~lVsasGDsT~r~Wdvk~s~l~G~~~---------------------------------- 139 (720)
T KOG0321|consen 101 -----NAIFDLKWAP--GESLLVSASGDSTIRPWDVKTSRLVGGRL---------------------------------- 139 (720)
T ss_pred -----ceeEeeccCC--CceeEEEccCCceeeeeeeccceeeccee----------------------------------
Confidence 8899999976 44589999999999999999876432210
Q ss_pred cccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCC-EEEEe-CCCcEEEEeCCCC
Q 010206 188 RNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEIS 265 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~ 265 (515)
..+|...|.+++|.|... .|++| .||.|.|||++..
T Consensus 140 ------------------------------------------~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n 177 (720)
T KOG0321|consen 140 ------------------------------------------NLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCN 177 (720)
T ss_pred ------------------------------------------ecccccccchhhhccCCCcceeeccCCCcEEEEEEecc
Confidence 258888899999988544 55667 7999999998754
Q ss_pred Ccc--cc----e---ec-----ccC-----ccccccCCceEE---EEEecCCCcEEEEEec-CCeEEEEecCcccccccc
Q 010206 266 NQS--FN----I---VD-----VKP-----ANMEDLTEVITS---AEFHPTHCNMLAYSSS-KGSIRLIDMRQSALCDTH 322 (515)
Q Consensus 266 ~~~--~~----~---~~-----~~~-----~~~~~~~~~i~~---i~~~p~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~ 322 (515)
... .+ + .. .+| +....+...|.+ +.+..|. ..||+++. |+.|++||++......+
T Consensus 178 ~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~~~r- 255 (720)
T KOG0321|consen 178 GVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYTAYR- 255 (720)
T ss_pred chhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecccccccc-
Confidence 310 00 0 00 011 122334444554 5555666 78888888 99999999998754321
Q ss_pred cceeeeccCCCcccccccc---ccceeEEEEccCCCEEEE-EcCCeEEEEEeeCCC-CCeeeEeeeccccccccccccCC
Q 010206 323 SKLFEEQEAPGTRSFFTEI---IASISDIKFARNGRHILS-RDYMTLKLWDINMDS-GPVATFQVHEHLRPKLCDLYEND 397 (515)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~s-~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 397 (515)
..... ...+..| .-.+.++.....|.+|++ +.|+.|++|++.... .++..+.++....
T Consensus 256 -----~ep~~--~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~s---------- 318 (720)
T KOG0321|consen 256 -----QEPRG--SDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSS---------- 318 (720)
T ss_pred -----cCCCc--ccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccce----------
Confidence 11100 0011112 235777777777777765 778999999998532 2444444443221
Q ss_pred CccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCC-eeEeecCCCeEEE
Q 010206 398 SIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP-SRPLGSLSGVVRR 468 (515)
Q Consensus 398 ~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v~l 468 (515)
++ ..-..+||+.+|++|+.|...++|.+.+.......+.+|.-.|+.++|.|..- -+++++.|-.+++
T Consensus 319 -f~--vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~ki 387 (720)
T KOG0321|consen 319 -FY--VKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKI 387 (720)
T ss_pred -ee--eeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEE
Confidence 11 13467899999999999999999999988766788899999999999987653 3666799999998
No 142
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.91 E-value=5e-22 Score=179.60 Aligned_cols=197 Identities=15% Similarity=0.157 Sum_probs=137.7
Q ss_pred ceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEcc-CCCEEEEEcC-
Q 010206 285 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY- 362 (515)
Q Consensus 285 ~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~- 362 (515)
.|+.+.|.|-+...|+.++.||.|++|.+..+.+... ...+...+..|...|+++.|+| ....|+++++
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~---------~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd 699 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN---------EMTPEKILTIHGEKITSLRFHPLAADVLAVASYD 699 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcc---------cCCcceeeecccceEEEEEecchhhhHhhhhhcc
Confidence 3567777776557899999999999999987654211 1122345788999999999999 4567777765
Q ss_pred CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCC
Q 010206 363 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASK 442 (515)
Q Consensus 363 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~ 442 (515)
.+|++||+++ .+....+.+|... |+.++|||||+.+|+.+.||+|++|+.+++...+..-++..
T Consensus 700 ~Ti~lWDl~~-~~~~~~l~gHtdq---------------If~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpv 763 (1012)
T KOG1445|consen 700 STIELWDLAN-AKLYSRLVGHTDQ---------------IFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPV 763 (1012)
T ss_pred ceeeeeehhh-hhhhheeccCcCc---------------eeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCc
Confidence 9999999997 8888889999865 56999999999999999999999999988765543333221
Q ss_pred -CceeeEEECCCCCeeEeecCCCeEE----EecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEc
Q 010206 443 -NPMRRQVQTPSRPSRPLGSLSGVVR----RVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 506 (515)
Q Consensus 443 -~~v~~~~~~~~~~~l~s~~~d~~v~----l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~ 506 (515)
..-..+.|.-+|++++..+.|..-. +++...+....+....++-...+.--.+.+|.+.|...+
T Consensus 764 gtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltG 832 (1012)
T KOG1445|consen 764 GTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTG 832 (1012)
T ss_pred cCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEec
Confidence 2234677888999998888886533 233332221122222222233344445667777766554
No 143
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.1e-22 Score=177.28 Aligned_cols=233 Identities=17% Similarity=0.243 Sum_probs=176.2
Q ss_pred ccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccc
Q 010206 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (515)
--.++|+|++-+|+|.+|+.|+..|.|++|.+.+|... ..+.+|-
T Consensus 79 v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL-----------------------~v~~aHY------------ 123 (476)
T KOG0646|consen 79 VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILL-----------------------NVLSAHY------------ 123 (476)
T ss_pred ccccceeeeecCCCceEEEeecccCcEEEEEeccccHH-----------------------HHHHhhc------------
Confidence 34688999999999999999989999999999998843 5577887
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|+++.| +.|+.+|++|+.||.|.+|.+..-
T Consensus 124 Q~ITcL~f--s~dgs~iiTgskDg~V~vW~l~~l---------------------------------------------- 155 (476)
T KOG0646|consen 124 QSITCLKF--SDDGSHIITGSKDGAVLVWLLTDL---------------------------------------------- 155 (476)
T ss_pred cceeEEEE--eCCCcEEEecCCCccEEEEEEEee----------------------------------------------
Confidence 88999999 788999999999999999997542
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC--CCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
+.+..++. .++... ...|.-+|+++...+- ...|+++ .|.++++||+..+....
T Consensus 156 ------v~a~~~~~----------------~~p~~~-f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLl 212 (476)
T KOG0646|consen 156 ------VSADNDHS----------------VKPLHI-FSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLL 212 (476)
T ss_pred ------cccccCCC----------------ccceee-eccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeE
Confidence 11111110 112222 3589999999887653 4566776 89999999999876554
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccc--ceeE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA--SISD 347 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~ 347 (515)
.+. ....+.+++.+|-+ +.++.|+.+|.|.+.++.+.......+..-..+........+.+|.+ +|+|
T Consensus 213 ti~---------fp~si~av~lDpae-~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITc 282 (476)
T KOG0646|consen 213 TIT---------FPSSIKAVALDPAE-RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITC 282 (476)
T ss_pred EEe---------cCCcceeEEEcccc-cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeE
Confidence 332 46779999999998 89999999999999888654321111111111112223456788888 9999
Q ss_pred EEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEee
Q 010206 348 IKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV 382 (515)
Q Consensus 348 ~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~ 382 (515)
++++-||.+|++|+. |.++|||+.+ .++++++..
T Consensus 283 Lais~DgtlLlSGd~dg~VcvWdi~S-~Q~iRtl~~ 317 (476)
T KOG0646|consen 283 LAISTDGTLLLSGDEDGKVCVWDIYS-KQCIRTLQT 317 (476)
T ss_pred EEEecCccEEEeeCCCCCEEEEecch-HHHHHHHhh
Confidence 999999999999986 9999999986 788877763
No 144
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=3e-22 Score=169.90 Aligned_cols=268 Identities=18% Similarity=0.286 Sum_probs=185.4
Q ss_pred cccccccceEEEEECCCCC--eEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccc
Q 010206 30 EEVQEVDIISAIEFDKSGD--HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~--~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (515)
..++|.+.++.+.-++-|+ +.|+=+..|.|.||++.... ..+........+ ...+.+.++.+|.
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l------~~l~~~~~~~~~-s~~~Pl~t~~ghk------- 211 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHL------NALSEPGLEVKD-SEFRPLFTFNGHK------- 211 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhh------hhhcCccccccc-cccCceEEecccC-------
Confidence 3467899999999888654 55555688999999986432 122222211111 3344455677787
Q ss_pred cccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccc
Q 010206 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (515)
Q Consensus 108 ~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~ 187 (515)
..=++|+|+|...| .|++|..-+.|++|...++....-
T Consensus 212 -----~EGy~LdWSp~~~g-~LlsGDc~~~I~lw~~~~g~W~vd------------------------------------ 249 (440)
T KOG0302|consen 212 -----GEGYGLDWSPIKTG-RLLSGDCVKGIHLWEPSTGSWKVD------------------------------------ 249 (440)
T ss_pred -----ccceeeeccccccc-ccccCccccceEeeeeccCceeec------------------------------------
Confidence 66799999986665 689998889999999887642110
Q ss_pred cccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCC-EEEEe-CCCcEEEEeCCCC
Q 010206 188 RNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEIS 265 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~ 265 (515)
. +. +.+|...|-.++|+|... .|++| .||+|+|||++.+
T Consensus 250 -------------------------------~-------~P-f~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~ 290 (440)
T KOG0302|consen 250 -------------------------------Q-------RP-FTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSG 290 (440)
T ss_pred -------------------------------C-------cc-ccccccchhhhccCCccCceEEeeecCceEEEEEecCC
Confidence 0 00 246999999999999644 56667 7999999999977
Q ss_pred CcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccce
Q 010206 266 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 345 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 345 (515)
.+...+ ....|.+.|+-|.|+... .+|++|+.||+++|||+|+.+.- .+...++-|..+|
T Consensus 291 ~~~~~~------~~kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~-------------~pVA~fk~Hk~pI 350 (440)
T KOG0302|consen 291 PKKAAV------STKAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSG-------------QPVATFKYHKAPI 350 (440)
T ss_pred Ccccee------EeeccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccCC-------------CcceeEEeccCCe
Confidence 544332 346799999999999998 59999999999999999986532 1223467788999
Q ss_pred eEEEEccC--CCEEEEEcCCeEEEEEeeCCCC---------------CeeeEeeeccccccccccccCCCccceeeEEEc
Q 010206 346 SDIKFARN--GRHILSRDYMTLKLWDINMDSG---------------PVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 408 (515)
Q Consensus 346 ~~~~~s~~--~~~l~s~~~~~i~iwd~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 408 (515)
+++.|+|. +-+.++|.|.+|.|||+..... +.+.+..|.+.. .+-.+.|+
T Consensus 351 tsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQk-------------e~KevhWH 417 (440)
T KOG0302|consen 351 TSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQK-------------EVKEVHWH 417 (440)
T ss_pred eEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchh-------------Hhhhheec
Confidence 99999993 3344446679999999975221 222333343321 13367888
Q ss_pred CCC-CEEEEecCCCcEEEE
Q 010206 409 GDG-GRVATGSYSNLFRVF 426 (515)
Q Consensus 409 ~~~-~~l~s~s~dg~i~iw 426 (515)
++- .+|++.+.|| +.||
T Consensus 418 ~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 418 RQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred cCCCCeEEEecccc-eeEE
Confidence 864 4677777777 3444
No 145
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=3e-24 Score=196.68 Aligned_cols=194 Identities=18% Similarity=0.254 Sum_probs=167.3
Q ss_pred eccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010206 230 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 308 (515)
Q Consensus 230 ~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i 308 (515)
+.+|..+|.++.|+++..+|++| .+|+|++||++..+... ++.+|...+.++.|+|-+ .++++|+.|..+
T Consensus 66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vr--------tLtgh~~~~~sv~f~P~~-~~~a~gStdtd~ 136 (825)
T KOG0267|consen 66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVR--------TLTGHLLNITSVDFHPYG-EFFASGSTDTDL 136 (825)
T ss_pred eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhh--------hhhccccCcceeeeccce-EEeccccccccc
Confidence 36899999999999999999999 89999999999766543 778999999999999998 889999999999
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccc
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLR 387 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~ 387 (515)
++||.+...+.. .+.+|...+..+.|+|+|+++++|++ ..++|||+.. ++.+..|..|...
T Consensus 137 ~iwD~Rk~Gc~~----------------~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a-gk~~~ef~~~e~~- 198 (825)
T KOG0267|consen 137 KIWDIRKKGCSH----------------TYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTA-GKLSKEFKSHEGK- 198 (825)
T ss_pred eehhhhccCcee----------------eecCCcceeEEEeecCCCceeeccCCcceeeeecccc-ccccccccccccc-
Confidence 999998544321 24567788999999999999999876 9999999986 8999999988876
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCe
Q 010206 388 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV 465 (515)
Q Consensus 388 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 465 (515)
+..+.|+|..-++++|+.|+++++||+++- .++...+.....|.+..|.|+++.+++|.....
T Consensus 199 --------------v~sle~hp~e~Lla~Gs~d~tv~f~dletf-e~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 199 --------------VQSLEFHPLEVLLAPGSSDRTVRFWDLETF-EVISSGKPETDGVRSLAFNPDGKIVLSGEQISL 261 (825)
T ss_pred --------------ccccccCchhhhhccCCCCceeeeecccee-EEeeccCCccCCceeeeecCCceeeecCchhhh
Confidence 347889999999999999999999999976 444555666788999999999999999876643
No 146
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=6.8e-22 Score=162.41 Aligned_cols=308 Identities=14% Similarity=0.189 Sum_probs=198.1
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
+.|+++..-+. .++++++|+.||.|.+||++.........+-
T Consensus 44 GsvNsL~id~t-egrymlSGgadgsi~v~Dl~n~t~~e~s~li------------------------------------- 85 (397)
T KOG4283|consen 44 GSVNSLQIDLT-EGRYMLSGGADGSIAVFDLQNATDYEASGLI------------------------------------- 85 (397)
T ss_pred Cccceeeeccc-cceEEeecCCCccEEEEEeccccchhhccce-------------------------------------
Confidence 88999999654 4689999999999999999864311110000
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCC-EEEEe-CCCcEEEEeCCCCCcccc
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFN 270 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~ 270 (515)
-..+.+ ..+....+|...|.++.|-|-.. .|.++ -|.++++||.++.+....
T Consensus 86 -----------~k~~c~---------------v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~ 139 (397)
T KOG4283|consen 86 -----------AKHKCI---------------VAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVD 139 (397)
T ss_pred -----------eheeee---------------ccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEE
Confidence 000000 00111358889999999999544 45555 699999999998765432
Q ss_pred eecccCccccccCCceEEEEEecCC--CcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTH--CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~--~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
+ ...+.|++-+++|-. ..++|+|..+-.|++.|+..|... ..+.+|.+.|.++
T Consensus 140 F---------~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s----------------H~LsGHr~~vlaV 194 (397)
T KOG4283|consen 140 F---------KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS----------------HTLSGHRDGVLAV 194 (397)
T ss_pred e---------ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce----------------eeeccccCceEEE
Confidence 2 135668888888743 157889999999999999998753 2378899999999
Q ss_pred EEccCCCEEEE-Ec-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEE
Q 010206 349 KFARNGRHILS-RD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 426 (515)
Q Consensus 349 ~~s~~~~~l~s-~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw 426 (515)
.|+|...++++ |+ ||.|++||++....+...+..|....+.+.+. .......|+.++|+.|+.++++.+.|.++++|
T Consensus 195 ~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~-n~ah~gkvngla~tSd~~~l~~~gtd~r~r~w 273 (397)
T KOG4283|consen 195 EWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKT-NTAHYGKVNGLAWTSDARYLASCGTDDRIRVW 273 (397)
T ss_pred EeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccc-cccccceeeeeeecccchhhhhccCccceEEe
Confidence 99998777654 65 59999999997567888888887544443331 11111236689999999999999999999999
Q ss_pred ecCCCCcceeeec--cCCCceeeEEE---CCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCE
Q 010206 427 GCSEGSAESTTLE--ASKNPMRRQVQ---TPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENS 501 (515)
Q Consensus 427 ~~~~~~~~~~~~~--~~~~~v~~~~~---~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 501 (515)
+..+|...+..+. .|.... ..++ +.+...++---.++.+.++.-.+.. .....-.|...|.+.++-|+-+.
T Consensus 274 n~~~G~ntl~~~g~~~~n~~~-~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs---~ir~l~~h~k~i~c~~~~~~fq~ 349 (397)
T KOG4283|consen 274 NMESGRNTLREFGPIIHNQTT-SFAVHIQSMDSDVFVLFPNDGSLALLNLLEGS---FVRRLSTHLKRINCAAYRPDFEQ 349 (397)
T ss_pred ecccCcccccccccccccccc-cceEEEeecccceEEEEecCCeEEEEEccCce---EEEeeecccceeeEEeecCchhh
Confidence 9998854432221 111110 0111 1111111111122333331111100 11111235678899999999888
Q ss_pred EEEEcCCc-EEEEe
Q 010206 502 IACAASNS-LYMYY 514 (515)
Q Consensus 502 la~~~~~~-~~i~~ 514 (515)
..++..|+ ++.|.
T Consensus 350 ~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 350 CFTGDMNGNIYMWS 363 (397)
T ss_pred hhccccCCcccccc
Confidence 88877554 66553
No 147
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=7.5e-22 Score=177.27 Aligned_cols=313 Identities=13% Similarity=0.180 Sum_probs=219.6
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
+.|.+|... +.|.+|++|+.||+|++|.+.++.+.....+.. .|. +++|.|.+..-.
T Consensus 401 g~Vr~iSvd--p~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~---------~I~-------~vaw~P~~~~~v----- 457 (733)
T KOG0650|consen 401 GLVRSISVD--PSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS---------EIR-------SVAWNPLSDLCV----- 457 (733)
T ss_pred CeEEEEEec--CCcceeeecCCCCcEEEEEeecceEEEEEeecc---------eeE-------EEEecCCCCcee-----
Confidence 899999995 457799999999999999999999888877652 333 788888776431
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-----CCCcEEEEeCCCCCc
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-----DDLRINLWNLEISNQ 267 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-----~d~~i~iwd~~~~~~ 267 (515)
++++.... +.|-+ .. .+ ..+..-+....|+++ .++.+..|.-....+
T Consensus 458 -----LAvA~~~~-~~ivn----p~-------------~G-----~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e 509 (733)
T KOG0650|consen 458 -----LAVAVGEC-VLIVN----PI-------------FG-----DRLEVGPTKELLASAPNESEPDAAVVTWSRASLDE 509 (733)
T ss_pred -----EEEEecCc-eEEeC----cc-------------cc-----chhhhcchhhhhhcCCCccCCcccceeechhhhhh
Confidence 12222222 22211 00 00 001111223334433 367788887653332
Q ss_pred ccceecccCccccccCCceEEEEEecCCCcEEEEEecC---CeEEEEecCcccccccccceeeeccCCCccccccccccc
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 344 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (515)
...-+ ...-.|...|.++.|+..| .+|++...+ ..|.|+++...... .. |.-..+.
T Consensus 510 ~~~~v----~~~I~~~k~i~~vtWHrkG-DYlatV~~~~~~~~VliHQLSK~~sQ----~P------------F~kskG~ 568 (733)
T KOG0650|consen 510 LEKGV----CIVIKHPKSIRQVTWHRKG-DYLATVMPDSGNKSVLIHQLSKRKSQ----SP------------FRKSKGL 568 (733)
T ss_pred hccce----EEEEecCCccceeeeecCC-ceEEEeccCCCcceEEEEeccccccc----Cc------------hhhcCCc
Confidence 21100 0223478889999999999 899887664 46888888665431 11 2223367
Q ss_pred eeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEE
Q 010206 345 ISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 424 (515)
Q Consensus 345 i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~ 424 (515)
|.++.|+|...+|+.++...|+|||+.. ...++.+...... +.+++++|.|..|+.|+.|+.+.
T Consensus 569 vq~v~FHPs~p~lfVaTq~~vRiYdL~k-qelvKkL~tg~kw---------------iS~msihp~GDnli~gs~d~k~~ 632 (733)
T KOG0650|consen 569 VQRVKFHPSKPYLFVATQRSVRIYDLSK-QELVKKLLTGSKW---------------ISSMSIHPNGDNLILGSYDKKMC 632 (733)
T ss_pred eeEEEecCCCceEEEEeccceEEEehhH-HHHHHHHhcCCee---------------eeeeeecCCCCeEEEecCCCeeE
Confidence 9999999999999999999999999985 5555555433333 34899999999999999999999
Q ss_pred EEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCc---cc--cCCc-cccccCC----eeEEE
Q 010206 425 VFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSA---LD--ANGN-AFDFSMK----LLHLA 494 (515)
Q Consensus 425 iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~---~~--~~~~-~~~~~~~----i~~~~ 494 (515)
.||+.-..+..+++..|...++.+++++.-+++++|+.||++.+..+.-... .. +..+ +.+|... |.++.
T Consensus 633 WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~ 712 (733)
T KOG0650|consen 633 WFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTI 712 (733)
T ss_pred EEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeec
Confidence 9999988778899999999999999999999999999999999832221110 01 1111 2356555 99999
Q ss_pred EcCCCCEEEEEcCC-cEEEE
Q 010206 495 WHPSENSIACAASN-SLYMY 513 (515)
Q Consensus 495 ~s~~~~~la~~~~~-~~~i~ 513 (515)
|||...+|.+++.+ .+.+|
T Consensus 713 wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 713 WHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ccCCCceEEecCCCceEEee
Confidence 99999999988766 57776
No 148
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.90 E-value=8.4e-22 Score=163.94 Aligned_cols=287 Identities=15% Similarity=0.153 Sum_probs=205.4
Q ss_pred CceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeeccccc------ccccceeeeeeccCcCCeEEEEec------
Q 010206 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQET------NLVAGCRRIYAHAHDYHINSISNN------ 243 (515)
Q Consensus 176 ~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~------~~~~~~~~~~~~~~~~~v~~~~~~------ 243 (515)
...|+|||.++ ++.+.+..+++|++ ..... .........+-......|...+|-
T Consensus 54 gckWSPDGSci------------L~~sedn~l~~~nl--P~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~ 119 (406)
T KOG2919|consen 54 GCKWSPDGSCI------------LSLSEDNCLNCWNL--PFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSD 119 (406)
T ss_pred cceeCCCCceE------------EeecccCeeeEEec--ChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccC
Confidence 67899999999 99999999999983 32111 111111111112233456676764
Q ss_pred -CCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCC---ceEEEEEecCCCcEEEEEecCCeEEEEec-Cccc
Q 010206 244 -SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTE---VITSAEFHPTHCNMLAYSSSKGSIRLIDM-RQSA 317 (515)
Q Consensus 244 -~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~i~~i~~~p~~~~~l~~~~~dg~i~~wd~-~~~~ 317 (515)
|+..+++++ .+.-|++||.-+++..... ....|.+ ...+++|+||| ..|+ ++..+.|++||+ |.|.
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy------~~ydh~de~taAhsL~Fs~DG-eqlf-aGykrcirvFdt~RpGr 191 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASY------RAYDHQDEYTAAHSLQFSPDG-EQLF-AGYKRCIRVFDTSRPGR 191 (406)
T ss_pred CCccceeeeccccCceeeeeccccccccch------hhhhhHHhhhhheeEEecCCC-CeEe-ecccceEEEeeccCCCC
Confidence 567777777 7999999999888754321 1122333 34699999999 6666 466789999999 6666
Q ss_pred ccccccceeeeccCCCccccccccccceeEEEEcc-CCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccccccccccc
Q 010206 318 LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYE 395 (515)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (515)
.+........+ -.+..+.|.+++|+| +...++.|+. .++-||.-.. ..++..+.+|.+.
T Consensus 192 ~c~vy~t~~~~---------k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~-~~pl~llggh~gG--------- 252 (406)
T KOG2919|consen 192 DCPVYTTVTKG---------KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG-RRPLQLLGGHGGG--------- 252 (406)
T ss_pred CCcchhhhhcc---------cccccceeeeeeccCCCCcceeeecccceeeeEecCC-CCceeeecccCCC---------
Confidence 54332222221 123347799999999 5568888988 8888888875 8899999888866
Q ss_pred CCCccceeeEEEcCCCCEEEEec-CCCcEEEEecCCCCcceeeeccCCC-ceeeEEE--CCCCCeeEeecCCCeEEEecC
Q 010206 396 NDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAESTTLEASKN-PMRRQVQ--TPSRPSRPLGSLSGVVRRVKG 471 (515)
Q Consensus 396 ~~~~~~v~~~~~s~~~~~l~s~s-~dg~i~iw~~~~~~~~~~~~~~~~~-~v~~~~~--~~~~~~l~s~~~d~~v~l~~~ 471 (515)
|+.++|.++|+.|++|+ .|-.|..||++.....+..|+.|.. .-..|.| .|.+++|++|+.||.|++++.
T Consensus 253 ------vThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdl 326 (406)
T KOG2919|consen 253 ------VTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDL 326 (406)
T ss_pred ------eeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEec
Confidence 67999999999999998 4779999999988777788888876 4445555 689999999999999999554
Q ss_pred CCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcEE
Q 010206 472 ADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLY 511 (515)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~ 511 (515)
..+-. .......+...++.++++|--.++|+++...++
T Consensus 327 k~~gn--~~sv~~~~sd~vNgvslnP~mpilatssGqr~f 364 (406)
T KOG2919|consen 327 KDLGN--EVSVTGNYSDTVNGVSLNPIMPILATSSGQRIF 364 (406)
T ss_pred CCCCC--cccccccccccccceecCcccceeeeccCceee
Confidence 44331 112233467889999999998888888765443
No 149
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=7.8e-22 Score=172.12 Aligned_cols=231 Identities=14% Similarity=0.110 Sum_probs=179.2
Q ss_pred cCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEe
Q 010206 234 DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 312 (515)
Q Consensus 234 ~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd 312 (515)
.+.|.+++-+|.|.+|+.| -.+.|++|.+.++.... .+.+|-..|+++.|+-|| .+|++|+.||.|.+|+
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~--------v~~aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~ 151 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN--------VLSAHYQSITCLKFSDDG-SHIITGSKDGAVLVWL 151 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH--------HHHhhccceeEEEEeCCC-cEEEecCCCccEEEEE
Confidence 4779999999999999999 89999999999887653 557899999999999999 9999999999999999
Q ss_pred cCcccccccccceeeeccCCCccccccccccceeEEEEccC--CCEEEEEc-CCeEEEEEeeCCCCCeeeEeeecccccc
Q 010206 313 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN--GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPK 389 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~ 389 (515)
+-..-.. .. ...+.+...+..|.-+|+++...+- ...|++++ |.++++||+.. +..+.++.....
T Consensus 152 l~~lv~a------~~-~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~-g~LLlti~fp~s---- 219 (476)
T KOG0646|consen 152 LTDLVSA------DN-DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL-GVLLLTITFPSS---- 219 (476)
T ss_pred EEeeccc------cc-CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc-ceeeEEEecCCc----
Confidence 8543211 11 1144556678889999999998863 34677765 59999999997 777777654432
Q ss_pred ccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCC---------------cceeeeccCCC--ceeeEEECC
Q 010206 390 LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS---------------AESTTLEASKN--PMRRQVQTP 452 (515)
Q Consensus 390 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~---------------~~~~~~~~~~~--~v~~~~~~~ 452 (515)
+.+++.+|-++.++.|+.+|.|.+.++.... .....+.+|.+ +|++++++-
T Consensus 220 ------------i~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~ 287 (476)
T KOG0646|consen 220 ------------IKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST 287 (476)
T ss_pred ------------ceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec
Confidence 3589999999999999999999998775432 12355678887 999999999
Q ss_pred CCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCC
Q 010206 453 SRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN 500 (515)
Q Consensus 453 ~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 500 (515)
||..|++|+.||.|++ |++.............++|+.+.+.|-.+
T Consensus 288 DgtlLlSGd~dg~Vcv---Wdi~S~Q~iRtl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 288 DGTLLLSGDEDGKVCV---WDIYSKQCIRTLQTSKGPVTNLQINPLER 332 (476)
T ss_pred CccEEEeeCCCCCEEE---EecchHHHHHHHhhhccccceeEeecccc
Confidence 9999999999999999 33322112222222467888888866433
No 150
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=1.1e-21 Score=172.32 Aligned_cols=263 Identities=14% Similarity=0.169 Sum_probs=192.4
Q ss_pred ceeEEEEEeecCCCcEEEe--eeCCCeEEEEEccCC--eeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccc
Q 010206 113 EKINKIRWCQSANSALYLL--STNDKTIKLWKVQEK--KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~--~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~ 188 (515)
..+.++.|.. .. .|++ .+.|..+++|.-... +...+...... .-+ +++......++
T Consensus 35 pg~~s~~w~~--~n-~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--------~~~-------Cv~~~s~S~y~-- 94 (673)
T KOG4378|consen 35 PGDFSFNWQR--RN-FLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--------NAF-------CVACASQSLYE-- 94 (673)
T ss_pred Ccceeeeccc--cc-eEEEeecCCceeEEEecccCCCCccceeeccccc--------hHH-------HHhhhhcceee--
Confidence 4599999953 22 3444 467889999965432 22222111110 000 22232333444
Q ss_pred ccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCc
Q 010206 189 NFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
++|+..+.++||| +.. +....++++|...|+++.++-...+|+++ ..|.|.|..+.++..
T Consensus 95 ----------~sgG~~~~Vkiwd--l~~-------kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~ 155 (673)
T KOG4378|consen 95 ----------ISGGQSGCVKIWD--LRA-------KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK 155 (673)
T ss_pred ----------eccCcCceeeehh--hHH-------HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc
Confidence 9999999999999 331 23334468999999999999999999998 799999999987654
Q ss_pred ccceecccCcccccc-CCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccccee
Q 010206 268 SFNIVDVKPANMEDL-TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 346 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~-~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 346 (515)
.. .+... ...|+-+.|+|....+|.+++.+|.|.+||+...... ......|..+..
T Consensus 156 tt--------~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~---------------~~~~~~HsAP~~ 212 (673)
T KOG4378|consen 156 TT--------TFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI---------------FHASEAHSAPCR 212 (673)
T ss_pred cc--------ceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc---------------cchhhhccCCcC
Confidence 42 22222 3456789999988678889999999999999765432 123567889999
Q ss_pred EEEEccCCC-EEEE-EcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEE
Q 010206 347 DIKFARNGR-HILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 424 (515)
Q Consensus 347 ~~~~s~~~~-~l~s-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~ 424 (515)
.++|+|... +|++ |-|..|.+||.+. .+...++...... ..++|+++|.+|+.|+..|.|.
T Consensus 213 gicfspsne~l~vsVG~Dkki~~yD~~s-~~s~~~l~y~~Pl----------------stvaf~~~G~~L~aG~s~G~~i 275 (673)
T KOG4378|consen 213 GICFSPSNEALLVSVGYDKKINIYDIRS-QASTDRLTYSHPL----------------STVAFSECGTYLCAGNSKGELI 275 (673)
T ss_pred cceecCCccceEEEecccceEEEeeccc-ccccceeeecCCc----------------ceeeecCCceEEEeecCCceEE
Confidence 999999555 4555 4569999999985 6666666544332 3899999999999999999999
Q ss_pred EEecCCCCcceeeeccCCCceeeEEECCCC
Q 010206 425 VFGCSEGSAESTTLEASKNPMRRQVQTPSR 454 (515)
Q Consensus 425 iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 454 (515)
.||++..+..+.++.+|...|++++|-|..
T Consensus 276 ~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 276 AYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred EEecccCCCCceEeeecccceeEEEeeecc
Confidence 999998888889999999999999997764
No 151
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.89 E-value=4.8e-21 Score=164.36 Aligned_cols=260 Identities=14% Similarity=0.157 Sum_probs=172.1
Q ss_pred eccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCc--------c-cceecccCccccccCCceEEEEEecCCCcEE
Q 010206 230 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ--------S-FNIVDVKPANMEDLTEVITSAEFHPTHCNML 299 (515)
Q Consensus 230 ~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~--------~-~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l 299 (515)
+..|...|+++.|+|+|++|++| ++|.|.+|....-.. . .+.+.. ...+.+|...|+.++|+|++ .++
T Consensus 61 Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v-~k~lr~h~~diydL~Ws~d~-~~l 138 (434)
T KOG1009|consen 61 LSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVV-KKVLRGHRDDIYDLAWSPDS-NFL 138 (434)
T ss_pred ccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEE-EEEecccccchhhhhccCCC-cee
Confidence 57899999999999999999999 899999997661100 0 000000 02567799999999999999 999
Q ss_pred EEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEE-cCCeEEEEEeeCCCCCee
Q 010206 300 AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVA 378 (515)
Q Consensus 300 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~~~~i~iwd~~~~~~~~~ 378 (515)
++++.|..+++||+..|.+.. .+.+|...+..++|.|.++++++- .+...+.+.+.. .+.++
T Consensus 139 ~s~s~dns~~l~Dv~~G~l~~----------------~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~-~~~~~ 201 (434)
T KOG1009|consen 139 VSGSVDNSVRLWDVHAGQLLA----------------ILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKL-KQVIK 201 (434)
T ss_pred eeeeccceEEEEEeccceeEe----------------eccccccccceeecchhhhhhhhhccCcccceeeeee-eeeee
Confidence 999999999999999998642 256677889999999999999984 455566666653 22222
Q ss_pred eEe-----e--eccccccccccccCCCccc-eeeEEEcCCCCEEEEecC----C-----CcEEEEecCCCCcceeeeccC
Q 010206 379 TFQ-----V--HEHLRPKLCDLYENDSIFD-KFECCLSGDGGRVATGSY----S-----NLFRVFGCSEGSAESTTLEAS 441 (515)
Q Consensus 379 ~~~-----~--~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~s~s~----d-----g~i~iw~~~~~~~~~~~~~~~ 441 (515)
... . ..........+++++.+.. ...++|+|||.+|++.+. + +..++|+.+..+.....+...
T Consensus 202 ~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~ 281 (434)
T KOG1009|consen 202 RHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSP 281 (434)
T ss_pred eeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCC
Confidence 211 0 0111223334555554321 136899999999987542 2 344667666544444566666
Q ss_pred CCceeeEEECC------------------CCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEE
Q 010206 442 KNPMRRQVQTP------------------SRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIA 503 (515)
Q Consensus 442 ~~~v~~~~~~~------------------~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la 503 (515)
..+.-++.++| .+-.+|.++. ..|.++++....+ +....--|-..|++++|++||..|+
T Consensus 282 ~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P--~~~v~nihy~~iTDiaws~dg~~l~ 358 (434)
T KOG1009|consen 282 KKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEP--LAVVDNIHYSAITDIAWSDDGSVLL 358 (434)
T ss_pred CcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEeccccccc--eEEEeeeeeeeecceeecCCCcEEE
Confidence 66666665554 2223333333 3444444444331 1111123678999999999999999
Q ss_pred EEcCCcEE
Q 010206 504 CAASNSLY 511 (515)
Q Consensus 504 ~~~~~~~~ 511 (515)
+++.||.+
T Consensus 359 vSS~DGyC 366 (434)
T KOG1009|consen 359 VSSTDGFC 366 (434)
T ss_pred EeccCCce
Confidence 99998865
No 152
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=3.8e-22 Score=192.69 Aligned_cols=202 Identities=17% Similarity=0.215 Sum_probs=160.8
Q ss_pred ccCcCCeEEEEecCCCC-EEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010206 231 HAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 308 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i 308 (515)
..|.+.|..+.|++.+. +|++| +||.|.|||++..+..+.. .-....+.|.+++|+..-.++|++++.+|.+
T Consensus 113 ~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~------~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~ 186 (1049)
T KOG0307|consen 113 SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTP------GSQAPPSEIKCLSWNRKVSHILASGSPSGRA 186 (1049)
T ss_pred cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCC------CCCCCcccceEeccchhhhHHhhccCCCCCc
Confidence 57899999999999766 88888 8999999999976655432 1122467899999998766899999999999
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCC-EEEE--EcC--CeEEEEEeeCCCCCeeeEeee
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HILS--RDY--MTLKLWDINMDSGPVATFQVH 383 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s--~~~--~~i~iwd~~~~~~~~~~~~~~ 383 (515)
.|||+|..+.+.. +.. .+....+..++|+|+.. .|++ .+| -.|.+||++....+++++.+|
T Consensus 187 ~iWDlr~~~pii~----ls~----------~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H 252 (1049)
T KOG0307|consen 187 VIWDLRKKKPIIK----LSD----------TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGH 252 (1049)
T ss_pred eeccccCCCcccc----ccc----------CCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccc
Confidence 9999998754322 110 11113478999999653 3333 344 789999999878889999888
Q ss_pred ccccccccccccCCCccceeeEEEcCCC-CEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCC-eeEeec
Q 010206 384 EHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP-SRPLGS 461 (515)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~ 461 (515)
... |.++.|++.+ .+|++++.|++|.+|+.+++ +.+..+....+.+..+.|.|..+ .++.++
T Consensus 253 ~~G---------------ilslsWc~~D~~lllSsgkD~~ii~wN~~tg-Evl~~~p~~~nW~fdv~w~pr~P~~~A~as 316 (1049)
T KOG0307|consen 253 QRG---------------ILSLSWCPQDPRLLLSSGKDNRIICWNPNTG-EVLGELPAQGNWCFDVQWCPRNPSVMAAAS 316 (1049)
T ss_pred ccc---------------eeeeccCCCCchhhhcccCCCCeeEecCCCc-eEeeecCCCCcceeeeeecCCCcchhhhhe
Confidence 755 5699999966 88999999999999999997 55577888888899999999988 778889
Q ss_pred CCCeEEE
Q 010206 462 LSGVVRR 468 (515)
Q Consensus 462 ~d~~v~l 468 (515)
.||.|.|
T Consensus 317 fdgkI~I 323 (1049)
T KOG0307|consen 317 FDGKISI 323 (1049)
T ss_pred eccceee
Confidence 9999999
No 153
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.88 E-value=1.2e-19 Score=166.29 Aligned_cols=268 Identities=12% Similarity=0.091 Sum_probs=178.5
Q ss_pred cEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCccc
Q 010206 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS 206 (515)
Q Consensus 127 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~ 206 (515)
..+++++.|+.|++||+.+++.......... +. .+.++|+|+.+ ++++..++.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~---------~~-------~l~~~~dg~~l-----------~~~~~~~~~ 54 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR---------PR-------GITLSKDGKLL-----------YVCASDSDT 54 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC---------CC-------ceEECCCCCEE-----------EEEECCCCe
Confidence 4688889999999999998876655543211 11 68899999865 134567889
Q ss_pred EEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCC
Q 010206 207 LRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTE 284 (515)
Q Consensus 207 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 284 (515)
+.+|| ....+ ....+ ..+ ..+..++|+|+++.++++ .++.|++||+++.+... .+. +..
T Consensus 55 v~~~d--~~~~~------~~~~~-~~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~--------~~~-~~~ 115 (300)
T TIGR03866 55 IQVID--LATGE------VIGTL-PSG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLA--------EIP-VGV 115 (300)
T ss_pred EEEEE--CCCCc------EEEec-cCC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe--------Eee-CCC
Confidence 99999 33321 11221 222 235678999999977654 58999999998654322 111 233
Q ss_pred ceEEEEEecCCCcEEEEEecCC-eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEE-c-
Q 010206 285 VITSAEFHPTHCNMLAYSSSKG-SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-D- 361 (515)
Q Consensus 285 ~i~~i~~~p~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~- 361 (515)
.+.+++|+|++ .+++++..++ .+.+||.++++.... ... ......++|+|++++|+.+ .
T Consensus 116 ~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~~~~~~~----~~~-------------~~~~~~~~~s~dg~~l~~~~~~ 177 (300)
T TIGR03866 116 EPEGMAVSPDG-KIVVNTSETTNMAHFIDTKTYEIVDN----VLV-------------DQRPRFAEFTADGKELWVSSEI 177 (300)
T ss_pred CcceEEECCCC-CEEEEEecCCCeEEEEeCCCCeEEEE----EEc-------------CCCccEEEECCCCCEEEEEcCC
Confidence 46789999999 7888887765 567789877653211 110 1235678999999988654 3
Q ss_pred CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEE-ecCCCcEEEEecCCCCcceeeecc
Q 010206 362 YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT-GSYSNLFRVFGCSEGSAESTTLEA 440 (515)
Q Consensus 362 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s-~s~dg~i~iw~~~~~~~~~~~~~~ 440 (515)
++.|++||+.+ ++.+..+..+...... ... ....++|+|++++++. .+.++.+.+||+++++ ....+ .
T Consensus 178 ~~~v~i~d~~~-~~~~~~~~~~~~~~~~-------~~~-~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~-~~~~~-~ 246 (300)
T TIGR03866 178 GGTVSVIDVAT-RKVIKKITFEIPGVHP-------EAV-QPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE-VLDYL-L 246 (300)
T ss_pred CCEEEEEEcCc-ceeeeeeeeccccccc-------ccC-CccceEECCCCCEEEEEcCCCCeEEEEECCCCc-EEEEE-E
Confidence 49999999986 6665555432211000 000 0126889999998654 4556789999998763 33333 2
Q ss_pred CCCceeeEEECCCCCeeEee-cCCCeEEEe
Q 010206 441 SKNPMRRQVQTPSRPSRPLG-SLSGVVRRV 469 (515)
Q Consensus 441 ~~~~v~~~~~~~~~~~l~s~-~~d~~v~l~ 469 (515)
+...+..++|+|++++|+++ ..++.|+++
T Consensus 247 ~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~ 276 (300)
T TIGR03866 247 VGQRVWQLAFTPDEKYLLTTNGVSNDVSVI 276 (300)
T ss_pred eCCCcceEEECCCCCEEEEEcCCCCeEEEE
Confidence 34578899999999999876 468999993
No 154
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.5e-19 Score=170.34 Aligned_cols=412 Identities=14% Similarity=0.159 Sum_probs=242.4
Q ss_pred EEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEE
Q 010206 39 SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 118 (515)
Q Consensus 39 ~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l 118 (515)
....||+|+++++... +..|.||...+++.+ ..+..|. .++..+
T Consensus 20 ~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i-----------------------~~l~~~~------------a~l~s~ 63 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCT-GNFVKVYSTATGECI-----------------------TSLEDHT------------APLTSV 63 (792)
T ss_pred cccccccCCcEEEEee-CCEEEEEecchHhhh-----------------------hhccccc------------Ccccee
Confidence 3457899999888765 558999999998854 5677887 889999
Q ss_pred EEeecCCC-cEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCC-----C-C-Ccc-CCCCcCC----CceeecCCCc
Q 010206 119 RWCQSANS-ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAG-----N-G-PIF-GSHVSAI----PKSYMANGGC 185 (515)
Q Consensus 119 ~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~-~-~v~-~~~~~~~----~~~~~~~g~~ 185 (515)
.+.|++.. .++++++.||.|++||...+.+.+....+.+...... . . .++ +.....+ +...+-.++.
T Consensus 64 ~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~ 143 (792)
T KOG1963|consen 64 IVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSR 143 (792)
T ss_pred eecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceee
Confidence 99887664 5778899999999999999988877665544311000 0 0 000 0000000 0000011111
Q ss_pred ccccc-ccCCCC----------CCCCCC-------CcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCC
Q 010206 186 GERNF-GCASND----------SSFPPG-------GVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE 247 (515)
Q Consensus 186 l~~~~-~~~~~~----------~~~~~~-------~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 247 (515)
+.... .....| ++...+ .+..+.+|++ . ........+.....|...+++.+++|.++
T Consensus 144 ~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v--~---~~~~~~~~~~~~~~Htf~~t~~~~spn~~ 218 (792)
T KOG1963|consen 144 FVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFV--P---KHTKHTSSRDITVHHTFNITCVALSPNER 218 (792)
T ss_pred eEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEe--c---ccceeeccchhhhhhcccceeEEeccccc
Confidence 10000 000000 111111 1223344441 1 11111222222246777789999999999
Q ss_pred EEEEe-CCCcEEEEeCCC-CCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccce
Q 010206 248 TFISA-DDLRINLWNLEI-SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL 325 (515)
Q Consensus 248 ~l~s~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 325 (515)
+++++ .||.|.+|.--. ..... .+..+..|...|.+++|+++| .+|++|+..+.+.+|.+.+++.
T Consensus 219 ~~Aa~d~dGrI~vw~d~~~~~~~~-----t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~~k------- 285 (792)
T KOG1963|consen 219 YLAAGDSDGRILVWRDFGSSDDSE-----TCTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLETGKK------- 285 (792)
T ss_pred eEEEeccCCcEEEEeccccccccc-----cceEEEecccccceeEEecCC-ceEeecccceEEEEEeecCCCc-------
Confidence 99999 799999996432 11111 113567899999999999999 8999999999999999998762
Q ss_pred eeeccCCCccccccccccceeEEEEccCCCEEEE-EcCCeEEEEEeeCCCCCeeeEeeeccc-----------------c
Q 010206 326 FEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHL-----------------R 387 (515)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s-~~~~~i~iwd~~~~~~~~~~~~~~~~~-----------------~ 387 (515)
.++.-..++|..+.+|||+.+.+. ..|+.|.+..... .....++.+-... .
T Consensus 286 ----------qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d-l~~k~tIsgi~~~~~~~k~~~~~l~t~~~id 354 (792)
T KOG1963|consen 286 ----------QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD-LEIKSTISGIKPPTPSTKTRPQSLTTGVSID 354 (792)
T ss_pred ----------ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccc-hhhhhhccCccCCCccccccccccceeEEEc
Confidence 223444478999999999988776 4568888887632 1111111111100 0
Q ss_pred c--------------cccccccCCCcc------------------ceeeEEEcCCCCEEEEec--------CCC--cEEE
Q 010206 388 P--------------KLCDLYENDSIF------------------DKFECCLSGDGGRVATGS--------YSN--LFRV 425 (515)
Q Consensus 388 ~--------------~~~~~~~~~~~~------------------~v~~~~~s~~~~~l~s~s--------~dg--~i~i 425 (515)
+ +.-+++....++ .++.++.+..|.+++|.- .|| .+++
T Consensus 355 pr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKF 434 (792)
T KOG1963|consen 355 PRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKF 434 (792)
T ss_pred CCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEE
Confidence 0 000111122221 123344444566666643 122 4566
Q ss_pred EecCCCCcc--e--eeeccCCCceeeEEEC-CCCC-eeEeecCCCeEEE--ecC-CCCCccccCC----ccccccCCeeE
Q 010206 426 FGCSEGSAE--S--TTLEASKNPMRRQVQT-PSRP-SRPLGSLSGVVRR--VKG-ADNSALDANG----NAFDFSMKLLH 492 (515)
Q Consensus 426 w~~~~~~~~--~--~~~~~~~~~v~~~~~~-~~~~-~l~s~~~d~~v~l--~~~-~~~~~~~~~~----~~~~~~~~i~~ 492 (515)
|......+. + .....|...+.+.++. +... .+++++.||.+++ +.+ .+..+..-.. ....|..++.+
T Consensus 435 W~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a 514 (792)
T KOG1963|consen 435 WQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITA 514 (792)
T ss_pred EEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccc
Confidence 765433211 1 2224676666555554 3333 7899999999999 211 1111111111 11136789999
Q ss_pred EEEcCCCCEEEEEcCCcEEEEeC
Q 010206 493 LAWHPSENSIACAASNSLYMYYA 515 (515)
Q Consensus 493 ~~~s~~~~~la~~~~~~~~i~~~ 515 (515)
++|+.||..||++.++.+.+|..
T Consensus 515 ~~fs~dGslla~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 515 LCFSQDGSLLAVSFDDTITIWDY 537 (792)
T ss_pred hhhcCCCcEEEEecCCEEEEecC
Confidence 99999999999999999999973
No 155
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=4.2e-21 Score=173.84 Aligned_cols=289 Identities=15% Similarity=0.152 Sum_probs=189.7
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
...-|...|..+.|.|....|++++.|.++++||+.+.+..+ ...+-+|.
T Consensus 95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G---------------------~~~~~GH~--------- 144 (720)
T KOG0321|consen 95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVG---------------------GRLNLGHT--------- 144 (720)
T ss_pred ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeec---------------------ceeecccc---------
Confidence 346799999999999977789999999999999999887542 12367787
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..|.+++|.|... ..|++|+.||.|.|||++.............
T Consensus 145 ---~SvkS~cf~~~n~-~vF~tGgRDg~illWD~R~n~~d~~e~~~~~-------------------------------- 188 (720)
T KOG0321|consen 145 ---GSVKSECFMPTNP-AVFCTGGRDGEILLWDCRCNGVDALEEFDNR-------------------------------- 188 (720)
T ss_pred ---cccchhhhccCCC-cceeeccCCCcEEEEEEeccchhhHHHHhhh--------------------------------
Confidence 8999999987544 5899999999999999986543222211100
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEE---EEecCCCCEEEEe--CCCcEEEEeCCC
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINS---ISNNSDGETFISA--DDLRINLWNLEI 264 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~~~~~~l~s~--~d~~i~iwd~~~ 264 (515)
+.+...+. . .......+..+. -..+...|.+ +.+..|...|+++ .|+.|++||+++
T Consensus 189 ---------~~~~~n~~-p--------tpskp~~kr~~k-~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk 249 (720)
T KOG0321|consen 189 ---------IYGRHNTA-P--------TPSKPLKKRIRK-WKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRK 249 (720)
T ss_pred ---------hhccccCC-C--------CCCchhhccccc-cccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecc
Confidence 00000000 0 000000000000 1344444544 5556788888886 499999999997
Q ss_pred CCcccceecccCcccccc---CCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccc
Q 010206 265 SNQSFNIVDVKPANMEDL---TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 341 (515)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~---~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (515)
....++.-......+..| .-.+.++.....| .+|++.+.|+.|.+|++....... ...+.+...
T Consensus 250 ~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG-t~L~AsCtD~sIy~ynm~s~s~sP--~~~~sg~~~---------- 316 (720)
T KOG0321|consen 250 NYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG-TYLFASCTDNSIYFYNMRSLSISP--VAEFSGKLN---------- 316 (720)
T ss_pred cccccccCCCcccCccCcccceeeeEEEEecCCC-CeEEEEecCCcEEEEeccccCcCc--hhhccCccc----------
Confidence 765543221111122233 3457788888888 555555669999999998754311 111111100
Q ss_pred ccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCC-EEEEecC
Q 010206 342 IASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSY 419 (515)
Q Consensus 342 ~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~s~ 419 (515)
..-...-..+||+.++++|+. ...++|.+.+...+...+.+|... |+.++|.|... -++++++
T Consensus 317 ~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~e---------------Vt~V~w~pS~~t~v~TcSd 381 (720)
T KOG0321|consen 317 SSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTRE---------------VTTVRWLPSATTPVATCSD 381 (720)
T ss_pred ceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceE---------------EEEEeeccccCCCceeecc
Confidence 011122346899999999975 999999999877777888888755 67899988433 3777799
Q ss_pred CCcEEEEecCCC
Q 010206 420 SNLFRVFGCSEG 431 (515)
Q Consensus 420 dg~i~iw~~~~~ 431 (515)
|.++++|++..+
T Consensus 382 D~~~kiW~l~~~ 393 (720)
T KOG0321|consen 382 DFRVKIWRLSNG 393 (720)
T ss_pred CcceEEEeccCc
Confidence 999999999776
No 156
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.7e-20 Score=175.72 Aligned_cols=239 Identities=17% Similarity=0.227 Sum_probs=186.0
Q ss_pred ccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010206 231 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 309 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~ 309 (515)
..|....+.++|.|+|++|+++ .||.|++|+......... .+.-+...|.+++... ..|++|+.+++|.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~-------ti~~~g~~v~~ia~~s---~~f~~~s~~~tv~ 79 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE-------TIDISGELVSSIACYS---NHFLTGSEQNTVL 79 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc-------hhhccCceeEEEeecc---cceEEeeccceEE
Confidence 4788889999999999999998 899999999876532222 3333677788887654 5799999999999
Q ss_pred EEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccc
Q 010206 310 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRP 388 (515)
Q Consensus 310 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~ 388 (515)
+|.+..+..-. . +.--.-++++++|+-+|++++.|++ -.|++-++.. ......+.+|...
T Consensus 80 ~y~fps~~~~~-i---------------L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D-~s~~~~lrgh~ap-- 140 (933)
T KOG1274|consen 80 RYKFPSGEEDT-I---------------LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDD-SSQEKVLRGHDAP-- 140 (933)
T ss_pred EeeCCCCCccc-e---------------eeeeeccceEEEEecCCcEEEeecCceeEEEEeccc-cchheeecccCCc--
Confidence 99998875311 1 1112257999999999999999876 8999999985 7778889999877
Q ss_pred cccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeec-------cC-CCceeeEEECCCCCeeEee
Q 010206 389 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE-------AS-KNPMRRQVQTPSRPSRPLG 460 (515)
Q Consensus 389 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~-------~~-~~~v~~~~~~~~~~~l~s~ 460 (515)
|.++.|+|++++||+.+-||.|++|++.++. +..++. .- ...+..++|+|++..++..
T Consensus 141 -------------Vl~l~~~p~~~fLAvss~dG~v~iw~~~~~~-~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~ 206 (933)
T KOG1274|consen 141 -------------VLQLSYDPKGNFLAVSSCDGKVQIWDLQDGI-LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVP 206 (933)
T ss_pred -------------eeeeeEcCCCCEEEEEecCceEEEEEcccch-hhhhcccCCccccccccceeeeeeecCCCCeEEee
Confidence 5599999999999999999999999999873 333333 12 4567889999999999999
Q ss_pred cCCCeEEE--ecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEc-CCcEEEEeC
Q 010206 461 SLSGVVRR--VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYYA 515 (515)
Q Consensus 461 ~~d~~v~l--~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~-~~~~~i~~~ 515 (515)
+.|+.|++ .++|+... .+... .+...+..++|+|.|+|||+++ ++++.||+.
T Consensus 207 ~~d~~Vkvy~r~~we~~f-~Lr~~--~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv 261 (933)
T KOG1274|consen 207 PVDNTVKVYSRKGWELQF-KLRDK--LSSSKFSDLQWSPNGKYIAASTLDGQILVWNV 261 (933)
T ss_pred ccCCeEEEEccCCceehe-eeccc--ccccceEEEEEcCCCcEEeeeccCCcEEEEec
Confidence 99999999 55665542 11111 2344599999999999999888 455999973
No 157
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.7e-20 Score=153.68 Aligned_cols=281 Identities=18% Similarity=0.236 Sum_probs=196.7
Q ss_pred eEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCC
Q 010206 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (515)
Q Consensus 115 v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~ 194 (515)
-+++.| +..|.+|++|+.||.|.+||+.+.....+
T Consensus 26 a~~~~F--s~~G~~lAvGc~nG~vvI~D~~T~~iar~------------------------------------------- 60 (405)
T KOG1273|consen 26 AECCQF--SRWGDYLAVGCANGRVVIYDFDTFRIARM------------------------------------------- 60 (405)
T ss_pred cceEEe--ccCcceeeeeccCCcEEEEEccccchhhh-------------------------------------------
Confidence 688899 45677999999999999999887541111
Q ss_pred CCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceec
Q 010206 195 NDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 273 (515)
Q Consensus 195 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~ 273 (515)
+.+|..+|.+++|+++|+.|+++ .|..|.+||+..+....++.
T Consensus 61 -----------------------------------lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 61 -----------------------------------LSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred -----------------------------------hhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 46889999999999999999998 89999999999888665432
Q ss_pred ccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccC
Q 010206 274 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 353 (515)
Q Consensus 274 ~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 353 (515)
...+|..+.|+|...+.++..-.+..-.+-++..... ..+.. ..+... ...-.+..|.+.
T Consensus 105 --------f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-----~~Lp~-d~d~dl------n~sas~~~fdr~ 164 (405)
T KOG1273|consen 105 --------FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-----SVLPK-DDDGDL------NSSASHGVFDRR 164 (405)
T ss_pred --------ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-----eeccC-CCcccc------ccccccccccCC
Confidence 5788999999997656666555555556666654321 11111 111101 012233468899
Q ss_pred CCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCC-
Q 010206 354 GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG- 431 (515)
Q Consensus 354 ~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~- 431 (515)
|+++++|.. |.+.++|..+ .+++..++.... ..|-++.++..|++|+..+.|..||.|+++.-
T Consensus 165 g~yIitGtsKGkllv~~a~t-~e~vas~rits~--------------~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~ 229 (405)
T KOG1273|consen 165 GKYIITGTSKGKLLVYDAET-LECVASFRITSV--------------QAIKQIIVSRKGRFLIINTSDRVIRTYEISDID 229 (405)
T ss_pred CCEEEEecCcceEEEEecch-heeeeeeeechh--------------eeeeEEEEeccCcEEEEecCCceEEEEehhhhc
Confidence 999999987 9999999997 677776664431 11347899999999999999999999998731
Q ss_pred -----Ccce--eeec--cCCCceeeEEECCCCCeeEeecCC-CeEEEecCCCCCccccCCcccccc-CCeeEEEEcCCCC
Q 010206 432 -----SAES--TTLE--ASKNPMRRQVQTPSRPSRPLGSLS-GVVRRVKGADNSALDANGNAFDFS-MKLLHLAWHPSEN 500 (515)
Q Consensus 432 -----~~~~--~~~~--~~~~~v~~~~~~~~~~~l~s~~~d-~~v~l~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~~~ 500 (515)
+.+. +.++ ....+...++|+.+|.|+..++.- -.+++++ ..-..+...+.+.+ ....++.|+|-..
T Consensus 230 ~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE---~~~GsLVKILhG~kgE~l~DV~whp~rp 306 (405)
T KOG1273|consen 230 DEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWE---KSIGSLVKILHGTKGEELLDVNWHPVRP 306 (405)
T ss_pred ccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEe---cCCcceeeeecCCchhheeeccccccee
Confidence 1111 1221 234456788999999999887743 3455522 11111221222333 4578999999999
Q ss_pred EEEEEcCCcEEEEe
Q 010206 501 SIACAASNSLYMYY 514 (515)
Q Consensus 501 ~la~~~~~~~~i~~ 514 (515)
.|++-..+.+++|+
T Consensus 307 ~i~si~sg~v~iw~ 320 (405)
T KOG1273|consen 307 IIASIASGVVYIWA 320 (405)
T ss_pred eeeeccCCceEEEE
Confidence 99988888899996
No 158
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.88 E-value=6.3e-21 Score=159.13 Aligned_cols=318 Identities=17% Similarity=0.206 Sum_probs=207.9
Q ss_pred cccccceEEEEECC-----CCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccc
Q 010206 32 VQEVDIISAIEFDK-----SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (515)
Q Consensus 32 ~~h~~~v~~v~~s~-----~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 106 (515)
..|..+|..++|++ ....+|+.+.+ ++.+|........ +.+..+...
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~i--------------------r~lq~y~D~------- 86 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGI--------------------RLLQSYADE------- 86 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccce--------------------eeeeeccCC-------
Confidence 46889999999996 33467776644 7999997644311 111111111
Q ss_pred ccccccceeEEEEEeecCC--CcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCC
Q 010206 107 KSLEIEEKINKIRWCQSAN--SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (515)
Q Consensus 107 ~~~~~~~~v~~l~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~ 184 (515)
++++....++|+-..+ +.++++++.-|.|++.|+.++++...
T Consensus 87 ---d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~--------------------------------- 130 (385)
T KOG1034|consen 87 ---DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKN--------------------------------- 130 (385)
T ss_pred ---CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccc---------------------------------
Confidence 1226778888865433 35777788889999999877653221
Q ss_pred ccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCC-CEEEEe-CCCcEEEEeC
Q 010206 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNL 262 (515)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~ 262 (515)
+.+|...|+.+.+.|+. ++++++ .|.+|++|++
T Consensus 131 ---------------------------------------------~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI 165 (385)
T KOG1034|consen 131 ---------------------------------------------YRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNI 165 (385)
T ss_pred ---------------------------------------------eeccCccchhhhcCCCCCcEEEEecCCceEEEEec
Confidence 35888999999999975 556666 7999999999
Q ss_pred CCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccc--cceeeecc----CCCccc
Q 010206 263 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH--SKLFEEQE----APGTRS 336 (515)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~--~~~~~~~~----~~~~~~ 336 (515)
++.....-+ ..+++|.+.|.++.|++++ ..|++++.|..+++|++...+..... ...+.... .+.+..
T Consensus 166 ~~~~Cv~Vf-----GG~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~ 239 (385)
T KOG1034|consen 166 QTDVCVAVF-----GGVEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKT 239 (385)
T ss_pred cCCeEEEEe-----cccccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccc
Confidence 977654332 2678999999999999999 89999999999999999854322111 11111111 111111
Q ss_pred ------cccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCcccee--eEEE
Q 010206 337 ------FFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF--ECCL 407 (515)
Q Consensus 337 ------~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~ 407 (515)
.-.-|...|.|+.|- |.++++-+ ++.|..|....-.+.+......+.....+..+.-.. -+++ ..+|
T Consensus 240 ~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~--c~iWfirf~~ 315 (385)
T KOG1034|consen 240 HFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPM--CDIWFIRFAF 315 (385)
T ss_pred ccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCc--cceEEEEEee
Confidence 123477888888887 67888844 589999987321222111111111111011110001 1133 3566
Q ss_pred cCCCCEEEEecCCCcEEEEecCCCCcce-eeec--cCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 408 SGDGGRVATGSYSNLFRVFGCSEGSAES-TTLE--ASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 408 s~~~~~l~s~s~dg~i~iw~~~~~~~~~-~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.|-+++||.|...|.|++||++...... .++. .....|+..+|+.++.+|+....|++|--
T Consensus 316 d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwr 379 (385)
T KOG1034|consen 316 DPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWR 379 (385)
T ss_pred cHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEE
Confidence 7778899999999999999999765533 2332 33467889999999999999999998764
No 159
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.87 E-value=2.8e-20 Score=159.69 Aligned_cols=335 Identities=13% Similarity=0.177 Sum_probs=213.2
Q ss_pred cccceEEEEECCCCC-eEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccc
Q 010206 34 EVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (515)
Q Consensus 34 h~~~v~~v~~s~~g~-~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (515)
...+|..+.|.++.. .||||+.|..|+||.+...+..++ .+...+...+..|.
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~--------------~~~V~y~s~Ls~H~------------ 65 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG--------------DMKVEYLSSLSRHT------------ 65 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC--------------ceeEEEeecccCCc------------
Confidence 346899999999766 999999999999999876654311 02345667788888
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|+++.| +++|+.|++|+.+|.|.+|....-... .. +. .
T Consensus 66 ~aVN~vRf--~p~gelLASg~D~g~v~lWk~~~~~~~---~~---------------------------d~-e------- 105 (434)
T KOG1009|consen 66 RAVNVVRF--SPDGELLASGGDGGEVFLWKQGDVRIF---DA---------------------------DT-E------- 105 (434)
T ss_pred ceeEEEEE--cCCcCeeeecCCCceEEEEEecCcCCc---cc---------------------------cc-h-------
Confidence 88999999 556779999999999999987651110 00 00 0
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
.+.....-..+..+.+|...|..++|+|++.+++++ -|..+++||+..+....
T Consensus 106 ------------------------~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~-- 159 (434)
T KOG1009|consen 106 ------------------------ADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLA-- 159 (434)
T ss_pred ------------------------hhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEe--
Confidence 000000111222257899999999999999999999 79999999999876542
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccce--e--eeccCCCc-ccccc--ccccc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL--F--EEQEAPGT-RSFFT--EIIAS 344 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~--~--~~~~~~~~-~~~~~--~~~~~ 344 (515)
.+..|...+..++|.|-+ +++++-+.|+..+.+.+...+........ . ...+.+.. ...+. ....-
T Consensus 160 ------~~~dh~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksF 232 (434)
T KOG1009|consen 160 ------ILDDHEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSF 232 (434)
T ss_pred ------eccccccccceeecchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhh
Confidence 567799999999999998 89999999987777777654432221100 0 00011100 00010 01123
Q ss_pred eeEEEEccCCCEEEEEc-----CCe-----EEEEEeeCCCCCeeeEeeeccccc--cccccccCCCccceeeEEEc-CCC
Q 010206 345 ISDIKFARNGRHILSRD-----YMT-----LKLWDINMDSGPVATFQVHEHLRP--KLCDLYENDSIFDKFECCLS-GDG 411 (515)
Q Consensus 345 i~~~~~s~~~~~l~s~~-----~~~-----i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~s-~~~ 411 (515)
...++|+|+|.+|++.+ .+. .++|+-..-.++...+........ +.+.+|-.=+.......-|+ |-+
T Consensus 233 FrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyr 312 (434)
T KOG1009|consen 233 FRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYR 312 (434)
T ss_pred hhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccc
Confidence 56688999999999732 122 344443322333333333221110 00000000000000000111 222
Q ss_pred CEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 412 GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 412 ~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
-.+|.++ .+.|++||.++-.+....-.-|..+++.++|+++|.+|+..|.||...+
T Consensus 313 lvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 313 LVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred eEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 2344444 4689999999876666777889999999999999999999999998877
No 160
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.6e-20 Score=157.67 Aligned_cols=286 Identities=17% Similarity=0.252 Sum_probs=191.0
Q ss_pred CeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEEEeecCCCc
Q 010206 48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSA 127 (515)
Q Consensus 48 ~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~ 127 (515)
..+|++..+|.|++||..+++ .+..|.++. ..++.++|.......
T Consensus 41 ~~vav~lSngsv~lyd~~tg~-----------------------~l~~fk~~~------------~~~N~vrf~~~ds~h 85 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ-----------------------LLEEFKGPP------------ATTNGVRFISCDSPH 85 (376)
T ss_pred eeEEEEecCCeEEEEeccchh-----------------------hhheecCCC------------CcccceEEecCCCCC
Confidence 578899999999999998866 346677887 779999997633445
Q ss_pred EEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccE
Q 010206 128 LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSL 207 (515)
Q Consensus 128 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i 207 (515)
.+.+++.||+|++||++...........
T Consensus 86 ~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~---------------------------------------------------- 113 (376)
T KOG1188|consen 86 GVISCSSDGTVRLWDIRSQAESARISWT---------------------------------------------------- 113 (376)
T ss_pred eeEEeccCCeEEEEEeecchhhhheecc----------------------------------------------------
Confidence 7899999999999999876533322211
Q ss_pred EeeeeeecccccccccceeeeeeccCc-CCeEEEEecCCCCEEEEe-----CCCcEEEEeCCCCCcccceecccCccccc
Q 010206 208 RLPVVVVTSQETNLVAGCRRIYAHAHD-YHINSISNNSDGETFISA-----DDLRINLWNLEISNQSFNIVDVKPANMED 281 (515)
Q Consensus 208 ~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 281 (515)
.+. .+..+++.+..++.+++| .+..|.+||++..++.... -.+.
T Consensus 114 ------------------------~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~------~~eS 163 (376)
T KOG1188|consen 114 ------------------------QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQ------LNES 163 (376)
T ss_pred ------------------------CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhh------hhhh
Confidence 111 344566666677777776 3788999999988764332 3467
Q ss_pred cCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCC-CEEEE-
Q 010206 282 LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILS- 359 (515)
Q Consensus 282 ~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~s- 359 (515)
|.+.|++++|+|..+++|++|+.||.|.+||+.....-..... ...|.+.|.++.|..++ +.|.+
T Consensus 164 H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~-------------viN~~sSI~~igw~~~~ykrI~cl 230 (376)
T KOG1188|consen 164 HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLH-------------VINHGSSIHLIGWLSKKYKRIMCL 230 (376)
T ss_pred ccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHH-------------hhcccceeeeeeeecCCcceEEEE
Confidence 9999999999999999999999999999999976432111111 22344679999999876 23444
Q ss_pred EcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcC-CCCEEEEecC-CCcEEEEecCC---C--C
Q 010206 360 RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSY-SNLFRVFGCSE---G--S 432 (515)
Q Consensus 360 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~s~-dg~i~iw~~~~---~--~ 432 (515)
....+..+|++.. +.+...+...........+.-..+. +.. +.+| +....+.++. -|+..++-+.. + .
T Consensus 231 TH~Etf~~~ele~-~~~~~~~~~~~~~~~d~r~~~~~dY---~I~-~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~ 305 (376)
T KOG1188|consen 231 THMETFAIYELED-GSEETWLENPDVSADDLRKEDNCDY---VIN-EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLL 305 (376)
T ss_pred EccCceeEEEccC-CChhhcccCccchhhhHHhhhhhhh---eee-cccCCCcceEEEeccccCceeEEEeeeccccccc
Confidence 4448999999985 5544443322111110110000011 011 1223 3444444443 56666665542 2 1
Q ss_pred cceeeecc-CCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 433 AESTTLEA-SKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 433 ~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.....+++ |..-|+.+.|...+..+.+|++||.+.+
T Consensus 306 ~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~ 342 (376)
T KOG1188|consen 306 TEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQA 342 (376)
T ss_pred CccccccCCcHHHHHHHhhhcccceeeccCCCceEEE
Confidence 22355666 6778889999888899999999999999
No 161
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.6e-19 Score=149.47 Aligned_cols=271 Identities=13% Similarity=0.220 Sum_probs=182.0
Q ss_pred eccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEec-CCCcEEEEEecCCe
Q 010206 230 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGS 307 (515)
Q Consensus 230 ~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p-~~~~~l~~~~~dg~ 307 (515)
..+|..-|.++.|++.|+.+++| .|++|+|||.+......... ...+.|.+.|..+.|.+ .-++.+|+++.|++
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~T----s~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt 84 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCT----SSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT 84 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEe----eeEEecCCcEEEEEecCccccceEEEEecCCc
Confidence 36888999999999999999999 89999999986554433321 25678999999999954 32389999999999
Q ss_pred EEEEecCcccccccccceeeeccCCCccccccccccceeEEEEcc--CCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeec
Q 010206 308 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR--NGRHILSRD-YMTLKLWDINMDSGPVATFQVHE 384 (515)
Q Consensus 308 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~ 384 (515)
+.||.=.....- .+.+.+ .....+....+.|+++.|.| -|-.|++++ ||.+|||+.-. ...+.......
T Consensus 85 v~iWEE~~~~~~-~~~~~W------v~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~d-p~nLs~W~Lq~ 156 (361)
T KOG2445|consen 85 VSIWEEQEKSEE-AHGRRW------VRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPD-PMNLSQWTLQH 156 (361)
T ss_pred eeeeeecccccc-ccccee------EEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCC-ccccccchhhh
Confidence 999985322110 001111 11223444557899999999 577788865 59999999764 22222222211
Q ss_pred cccccccccccCCCccceeeEEEcCC---CCEEEEecCC-----CcEEEEecCCCCc---ceeeeccCCCceeeEEECCC
Q 010206 385 HLRPKLCDLYENDSIFDKFECCLSGD---GGRVATGSYS-----NLFRVFGCSEGSA---ESTTLEASKNPMRRQVQTPS 453 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~s~s~d-----g~i~iw~~~~~~~---~~~~~~~~~~~v~~~~~~~~ 453 (515)
.....+... ...-..-.++.|+|. ..+||.|+.+ +.++||....... ...+|.+|.+||+.++|.|+
T Consensus 157 Ei~~~~~pp--~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 157 EIQNVIDPP--GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred hhhhccCCc--ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence 111000000 011112348888874 4578888766 5899998876542 23678899999999999996
Q ss_pred C----CeeEeecCCCeEEEecCCC----------CC---ccccC----CccccccCCeeEEEEcCCCCEEEEEcCCc-EE
Q 010206 454 R----PSRPLGSLSGVVRRVKGAD----------NS---ALDAN----GNAFDFSMKLLHLAWHPSENSIACAASNS-LY 511 (515)
Q Consensus 454 ~----~~l~s~~~d~~v~l~~~~~----------~~---~~~~~----~~~~~~~~~i~~~~~s~~~~~la~~~~~~-~~ 511 (515)
- ..||+++.|| |+|++-.. .. ...+. ...-+|.+.|..+.|+-.|..|+++++|| +.
T Consensus 235 ~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VR 313 (361)
T KOG2445|consen 235 IGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVR 313 (361)
T ss_pred cCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceee
Confidence 3 4689999999 88711110 00 00111 22337899999999999999999777665 88
Q ss_pred EEeC
Q 010206 512 MYYA 515 (515)
Q Consensus 512 i~~~ 515 (515)
+|.+
T Consensus 314 LWka 317 (361)
T KOG2445|consen 314 LWKA 317 (361)
T ss_pred ehhh
Confidence 8854
No 162
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=2.3e-20 Score=162.61 Aligned_cols=251 Identities=16% Similarity=0.199 Sum_probs=183.9
Q ss_pred ccCcCCeEEEEecCCCC--EEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCe
Q 010206 231 HAHDYHINSISNNSDGE--TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 307 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~ 307 (515)
..+..+|.+++|+|... ++++| ..|.|-+||+.+.++...-+ ..+..|..+|.++.|+|.+...+++.+.||+
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v----~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV----YLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce----EEeccCCccccceEecCCChhheeeeccCce
Confidence 56779999999999654 56667 69999999996443322111 1456799999999999988889999999999
Q ss_pred EEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccc
Q 010206 308 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHL 386 (515)
Q Consensus 308 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~ 386 (515)
|++-|++....- .+...+ .....+.++.|+.+.+.++.++. |...+||+++++.....+..|...
T Consensus 259 iR~~D~~~~i~e--~v~s~~------------~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kK 324 (498)
T KOG4328|consen 259 IRLQDFEGNISE--EVLSLD------------TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKK 324 (498)
T ss_pred eeeeeecchhhH--HHhhcC------------ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcc
Confidence 999999876421 111111 11246788899888777877776 999999999977767777777653
Q ss_pred cccccccccCCCccceeeEEEcCCCC-EEEEecCCCcEEEEecCCCCcc---eeeeccCCCceeeEEECCCCCeeEeecC
Q 010206 387 RPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSNLFRVFGCSEGSAE---STTLEASKNPMRRQVQTPSRPSRPLGSL 462 (515)
Q Consensus 387 ~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~s~dg~i~iw~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 462 (515)
|.+++++|... +|+|+|.|++++|||++.-... ....-.|..+|.+..|+|++-.|++.+.
T Consensus 325 ---------------I~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~ 389 (498)
T KOG4328|consen 325 ---------------ITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ 389 (498)
T ss_pred ---------------cceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc
Confidence 45899999654 6899999999999999864222 2455689999999999999999999999
Q ss_pred CCeEEEecCCCCCccccCCcccccc------CCeeEEEEcCCCCEEEEEc-CCcEEEEe
Q 010206 463 SGVVRRVKGADNSALDANGNAFDFS------MKLLHLAWHPSENSIACAA-SNSLYMYY 514 (515)
Q Consensus 463 d~~v~l~~~~~~~~~~~~~~~~~~~------~~i~~~~~s~~~~~la~~~-~~~~~i~~ 514 (515)
|..||++++.....-......+.|. -.....+|.|+.+++++|. ...|-||+
T Consensus 390 D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 390 DNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred CCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 9999996663211101111111222 2356789999999999986 33354543
No 163
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.2e-19 Score=155.02 Aligned_cols=309 Identities=13% Similarity=0.103 Sum_probs=212.3
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.+.|.++.||.++++||+|+.|-.++||++...-.... | +. ..+.+|.
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~---------------~--KP-I~~~~~~---------- 103 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT---------------P--KP-IGVMEHP---------- 103 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcC---------------C--CC-ceeccCc----------
Confidence 458999999999999999999999999999999864321100 0 00 1122221
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
|...|.+++| ......+++|..+++|.+-|+++.+...+...+
T Consensus 104 H~SNIF~L~F--~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~----------------------------------- 146 (609)
T KOG4227|consen 104 HRSNIFSLEF--DLENRFLYSGERWGTVIKHDIETKQSIYVANEN----------------------------------- 146 (609)
T ss_pred cccceEEEEE--ccCCeeEecCCCcceeEeeecccceeeeeeccc-----------------------------------
Confidence 1267999999 555679999999999999999987644332211
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
...+.|..+..+|..+.|++. .++.|.+||.+......
T Consensus 147 -----------------------------------------~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~ 185 (609)
T KOG4227|consen 147 -----------------------------------------NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPI 185 (609)
T ss_pred -----------------------------------------CcccceeecccCCCCceEEEEecCceEEEEeccCCCCCC
Confidence 123578888899988888887 89999999998665443
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
..+ -........+++.|+|..+.+|++.+..+-+.+||.+...... ....+... +......-+++.
T Consensus 186 ~~~-----~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~---~~~~~~~~------L~~~~~~~M~~~ 251 (609)
T KOG4227|consen 186 SLV-----LPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPV---YQRSMFKG------LPQENTEWMGSL 251 (609)
T ss_pred cee-----eecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchH---Hhhhcccc------Ccccchhhhhee
Confidence 332 1222345678999999999999999999999999998754211 11111000 111112346789
Q ss_pred EccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEec
Q 010206 350 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 428 (515)
Q Consensus 350 ~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~ 428 (515)
|+|.|..+.+--. ..-.+||+.. +.+..++...... -|-+ +-.+-+++|-.|-. +++|+.+=.|++|.+
T Consensus 252 ~~~~G~Q~msiRR~~~P~~~D~~S--~R~~V~k~D~N~~-----GY~N--~~T~KS~~F~~D~~-v~tGSD~~~i~~Wkl 321 (609)
T KOG4227|consen 252 WSPSGNQFMSIRRGKCPLYFDFIS--QRCFVLKSDHNPN-----GYCN--IKTIKSMTFIDDYT-VATGSDHWGIHIWKL 321 (609)
T ss_pred eCCCCCeehhhhccCCCEEeeeec--ccceeEeccCCCC-----ccee--eeeeeeeeeeccee-eeccCcccceEEEec
Confidence 9999998887554 4556788874 2223333221110 0000 01133788876544 999999999999998
Q ss_pred CCC----C------------------cceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEe
Q 010206 429 SEG----S------------------AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRV 469 (515)
Q Consensus 429 ~~~----~------------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~ 469 (515)
... + .....|++|.+-++.+.|+|-...|++.+....++|+
T Consensus 322 P~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlW 384 (609)
T KOG4227|consen 322 PRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLW 384 (609)
T ss_pred CCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecc
Confidence 642 1 1235688999999999999999999999999999993
No 164
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.86 E-value=2.4e-20 Score=168.88 Aligned_cols=147 Identities=10% Similarity=0.178 Sum_probs=110.1
Q ss_pred cceeEEEEcc-CCCEEEEEcC-CeEEEEEeeCCC------CCeeeEeeeccccccccccccCCCccceeeEEEcC-CCCE
Q 010206 343 ASISDIKFAR-NGRHILSRDY-MTLKLWDINMDS------GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGR 413 (515)
Q Consensus 343 ~~i~~~~~s~-~~~~l~s~~~-~~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~ 413 (515)
..|+.+.|.| |...|+.+.| |.|++|.+..++ .+...+..|... |+++.|+| -...
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eK---------------I~slRfHPLAadv 692 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEK---------------ITSLRFHPLAADV 692 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccce---------------EEEEEecchhhhH
Confidence 4689999999 6677777655 999999997633 234555666544 55999999 4568
Q ss_pred EEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEE
Q 010206 414 VATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHL 493 (515)
Q Consensus 414 l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~ 493 (515)
|++++.|-+|++||+.+. .+...|.+|.+.|-.++|+|+|+.+|+.+.||++++++-.+....-..+.. .-...-..+
T Consensus 693 La~asyd~Ti~lWDl~~~-~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~g-pvgtRgARi 770 (1012)
T KOG1445|consen 693 LAVASYDSTIELWDLANA-KLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKG-PVGTRGARI 770 (1012)
T ss_pred hhhhhccceeeeeehhhh-hhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCC-CccCcceeE
Confidence 999999999999999987 566899999999999999999999999999999999221111100011100 012344688
Q ss_pred EEcCCCCEEEEEc
Q 010206 494 AWHPSENSIACAA 506 (515)
Q Consensus 494 ~~s~~~~~la~~~ 506 (515)
.|.-||.++++.+
T Consensus 771 ~wacdgr~viv~G 783 (1012)
T KOG1445|consen 771 LWACDGRIVIVVG 783 (1012)
T ss_pred EEEecCcEEEEec
Confidence 9999999998775
No 165
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.86 E-value=1.1e-19 Score=165.72 Aligned_cols=270 Identities=16% Similarity=0.248 Sum_probs=201.5
Q ss_pred ceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeE
Q 010206 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (515)
Q Consensus 37 ~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 116 (515)
.|..++|.|||..|+.+. +.++.|||..++.. +.++.+|. ..|+
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~l-----------------------lqtLKgHK------------DtVy 57 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTL-----------------------LQPLKGHK------------DTVY 57 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCccc-----------------------cccccccc------------ceEE
Confidence 899999999999888875 44799999987764 46789998 8999
Q ss_pred EEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCC
Q 010206 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND 196 (515)
Q Consensus 117 ~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 196 (515)
+++| +.||+.+++|+.|+.|.+|+.+-.-.
T Consensus 58 cVAy--s~dGkrFASG~aDK~VI~W~~klEG~------------------------------------------------ 87 (1081)
T KOG1538|consen 58 CVAY--AKDGKRFASGSADKSVIIWTSKLEGI------------------------------------------------ 87 (1081)
T ss_pred EEEE--ccCCceeccCCCceeEEEecccccce------------------------------------------------
Confidence 9999 67899999999999999997542210
Q ss_pred CCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccC
Q 010206 197 SSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKP 276 (515)
Q Consensus 197 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~ 276 (515)
+ ...|...|.|+.|+|-.+.|++++=...-+|.........
T Consensus 88 ----------L----------------------kYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K------- 128 (1081)
T KOG1538|consen 88 ----------L----------------------KYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSK------- 128 (1081)
T ss_pred ----------e----------------------eeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHh-------
Confidence 0 1368899999999999999999855556789876432111
Q ss_pred ccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCC--
Q 010206 277 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-- 354 (515)
Q Consensus 277 ~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-- 354 (515)
......+.+++|..|| ++++.|-.+|+|.+-+- +++.. ...+. -.+..++|.+++|+|..
T Consensus 129 ---~kss~R~~~CsWtnDG-qylalG~~nGTIsiRNk-~gEek----~~I~R---------pgg~Nspiwsi~~~p~sg~ 190 (1081)
T KOG1538|consen 129 ---HKSSSRIICCSWTNDG-QYLALGMFNGTISIRNK-NGEEK----VKIER---------PGGSNSPIWSICWNPSSGE 190 (1081)
T ss_pred ---hhhheeEEEeeecCCC-cEEEEeccCceEEeecC-CCCcc----eEEeC---------CCCCCCCceEEEecCCCCC
Confidence 1235678899999999 99999999999998753 22211 11111 12334789999999842
Q ss_pred ---CEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCC
Q 010206 355 ---RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 355 ---~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~ 430 (515)
..+++.+. .++.++.+. ++.+..-+.-. ++-.++.+-++|.++..|+.|+.+++|-.+
T Consensus 191 G~~di~aV~DW~qTLSFy~Ls--G~~Igk~r~L~---------------FdP~CisYf~NGEy~LiGGsdk~L~~fTR~- 252 (1081)
T KOG1538|consen 191 GRNDILAVADWGQTLSFYQLS--GKQIGKDRALN---------------FDPCCISYFTNGEYILLGGSDKQLSLFTRD- 252 (1081)
T ss_pred CccceEEEEeccceeEEEEec--ceeecccccCC---------------CCchhheeccCCcEEEEccCCCceEEEeec-
Confidence 35556665 677777775 33322111000 111278888999999999999999999866
Q ss_pred CCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 431 GSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 431 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+.++.++......|+.++..|++++++.|+.||++--
T Consensus 253 -GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiAC 289 (1081)
T KOG1538|consen 253 -GVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIAC 289 (1081)
T ss_pred -CeEEeeccccceeEEEEEEccCCceEEEEEccCeeeh
Confidence 3566677777888999999999999999999999875
No 166
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.86 E-value=3.8e-19 Score=146.14 Aligned_cols=208 Identities=13% Similarity=0.237 Sum_probs=152.7
Q ss_pred cCcCCeEEEEecC-CCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010206 232 AHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 309 (515)
Q Consensus 232 ~~~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~ 309 (515)
.+..+++++.|+. +.+++.++ -|-+..|||++++..-. + + ..+-.|...|+.|+|...+..+|++.+.||.+|
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~-v---k-TQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvR 222 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGT-V---K-TQLIAHDKEVYDIAFLKGSRDVFASVGADGSVR 222 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccc-e---e-eEEEecCcceeEEEeccCccceEEEecCCCcEE
Confidence 4567899999987 56666676 69999999999762210 0 0 155679999999999998778999999999999
Q ss_pred EEecCcccccccccceeeeccCCCccccccccccceeEEEEcc-CCCEEEE-EcC-CeEEEEEeeCCCCCeeeEeeeccc
Q 010206 310 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILS-RDY-MTLKLWDINMDSGPVATFQVHEHL 386 (515)
Q Consensus 310 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s-~~~-~~i~iwd~~~~~~~~~~~~~~~~~ 386 (515)
+||+|...-. .-.++.+.. ..+...++|++ |-+++|+ +-+ ..|.|.|++.+..++.++..|...
T Consensus 223 mFDLR~leHS---TIIYE~p~~----------~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~ 289 (364)
T KOG0290|consen 223 MFDLRSLEHS---TIIYEDPSP----------STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQAS 289 (364)
T ss_pred EEEecccccc---eEEecCCCC----------CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCccc
Confidence 9999986421 112232211 25788899997 5677887 445 899999999999999999999987
Q ss_pred cccccccccCCCccceeeEEEcCCC-CEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCe
Q 010206 387 RPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV 465 (515)
Q Consensus 387 ~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 465 (515)
+ ..++|.|.. ..|+|+++|..+.+||+..-.. +.-.+|+ |+
T Consensus 290 V---------------NgIaWaPhS~~hictaGDD~qaliWDl~q~~~-----~~~~dPi-----------la------- 331 (364)
T KOG0290|consen 290 V---------------NGIAWAPHSSSHICTAGDDCQALIWDLQQMPR-----ENGEDPI-----------LA------- 331 (364)
T ss_pred c---------------cceEecCCCCceeeecCCcceEEEEecccccc-----cCCCCch-----------hh-------
Confidence 4 489999965 5799999999999999985411 0001111 10
Q ss_pred EEEecCCCCCccccCCccccccCCeeEEEEcC-CCCEEEEEcCCcEEEE
Q 010206 466 VRRVKGADNSALDANGNAFDFSMKLLHLAWHP-SENSIACAASNSLYMY 513 (515)
Q Consensus 466 v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~la~~~~~~~~i~ 513 (515)
..-++.|+.+.|++ ...+|+++..+.+-+.
T Consensus 332 ------------------y~a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 332 ------------------YTAGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred ------------------hhccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 01257889999995 4678998888776553
No 167
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=7.3e-20 Score=158.94 Aligned_cols=269 Identities=16% Similarity=0.201 Sum_probs=178.5
Q ss_pred ceEEEEECC-------CCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 37 IISAIEFDK-------SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 37 ~v~~v~~s~-------~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
.-.|++|-. -|+++|.|+.|..|.|||+.-...+-++. .|........ ....+....-.+|.
T Consensus 175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~-~LGs~~sk~~-~k~~k~~~~~~gHT--------- 243 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCV-TLGSKASKKK-KKKGKRSNSASGHT--------- 243 (463)
T ss_pred cchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccce-eechhhhhhh-hhhcccccccccch---------
Confidence 336666643 36899999999999999986332210000 0000000000 00000001123455
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..|.++.|+. .....|++|+.|.+|++||+.+++....
T Consensus 244 ---davl~Ls~n~-~~~nVLaSgsaD~TV~lWD~~~g~p~~s-------------------------------------- 281 (463)
T KOG0270|consen 244 ---DAVLALSWNR-NFRNVLASGSADKTVKLWDVDTGKPKSS-------------------------------------- 281 (463)
T ss_pred ---HHHHHHHhcc-ccceeEEecCCCceEEEEEcCCCCccee--------------------------------------
Confidence 7888999864 3346899999999999999999875433
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC-CCEEEEe-CCCcEEEEeCCCCCc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
+..|...|.++.|+|. ...|++| .|++|.+.|.+....
T Consensus 282 ----------------------------------------~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~ 321 (463)
T KOG0270|consen 282 ----------------------------------------ITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN 321 (463)
T ss_pred ----------------------------------------hhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc
Confidence 2457789999999985 6677788 799999999996443
Q ss_pred ccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 347 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (515)
....+ ...+.|-.++|.|..+..++++..||+++-+|+|+.... ...+..|.++|.+
T Consensus 322 s~~~w--------k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~---------------vwt~~AHd~~ISg 378 (463)
T KOG0270|consen 322 SGKEW--------KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKP---------------VWTLKAHDDEISG 378 (463)
T ss_pred cCceE--------EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCc---------------eeEEEeccCCcce
Confidence 32211 136779999999988788999999999999999986421 1225778899999
Q ss_pred EEEccCCC-EEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCC-EEEEecCCCcEE
Q 010206 348 IKFARNGR-HILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSNLFR 424 (515)
Q Consensus 348 ~~~s~~~~-~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~s~dg~i~ 424 (515)
+++++.-. ++++++ ++.+++|++.. ..+ .....|.-...++ .+.++.|+-. +|+.|+..+.++
T Consensus 379 l~~n~~~p~~l~t~s~d~~Vklw~~~~-~~~-~~v~~~~~~~~rl------------~c~~~~~~~a~~la~GG~k~~~~ 444 (463)
T KOG0270|consen 379 LSVNIQTPGLLSTASTDKVVKLWKFDV-DSP-KSVKEHSFKLGRL------------HCFALDPDVAFTLAFGGEKAVLR 444 (463)
T ss_pred EEecCCCCcceeeccccceEEEEeecC-CCC-cccccccccccce------------eecccCCCcceEEEecCccceEE
Confidence 99998544 455555 59999999974 222 2222232222111 2566666544 577888888999
Q ss_pred EEecCCCCcce
Q 010206 425 VFGCSEGSAES 435 (515)
Q Consensus 425 iw~~~~~~~~~ 435 (515)
|||+.+.....
T Consensus 445 vwd~~~~~~V~ 455 (463)
T KOG0270|consen 445 VWDIFTNSPVR 455 (463)
T ss_pred EeecccChhHH
Confidence 99998775443
No 168
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.7e-20 Score=181.42 Aligned_cols=299 Identities=14% Similarity=0.112 Sum_probs=204.6
Q ss_pred CceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCE----EEE
Q 010206 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET----FIS 251 (515)
Q Consensus 176 ~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----l~s 251 (515)
.++|+|++..+ +..+...+.+-.+-+.+.++.||. +.........+.... ..-..+.+.++|.+.+.. |+.
T Consensus 11 ~~awSp~~~~~-laagt~aq~~D~sfst~~slEife--ld~~~~~~dlk~~~s--~~s~~rF~kL~W~~~g~~~~GlIaG 85 (1049)
T KOG0307|consen 11 TFAWSPASPPL-LAAGTAAQQFDASFSTSASLEIFE--LDFSDESSDLKPVGS--LQSSNRFNKLAWGSYGSHSHGLIAG 85 (1049)
T ss_pred eEEecCCCchh-hHHHhhhhccccccccccccceee--ecccCcccccccccc--ccccccceeeeecccCCCccceeec
Confidence 56889988522 222222223333335667777776 333322211111111 123466789999887665 666
Q ss_pred e-CCCcEEEEeCCCC--CcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeee
Q 010206 252 A-DDLRINLWNLEIS--NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 328 (515)
Q Consensus 252 ~-~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 328 (515)
| +||.|.+||.... .....++ .+...|.+.|..+.|++..+++||+|+.||.|.|||+.+.+.... +..
T Consensus 86 G~edG~I~ly~p~~~~~~~~~~~l----a~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~----~~~ 157 (1049)
T KOG0307|consen 86 GLEDGNIVLYDPASIIANASEEVL----ATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFT----PGS 157 (1049)
T ss_pred cccCCceEEecchhhccCcchHHH----hhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCC----CCC
Confidence 6 8999999998752 2222211 256779999999999999877999999999999999987543211 110
Q ss_pred ccCCCccccccccccceeEEEEcc-CCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEE
Q 010206 329 QEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC 406 (515)
Q Consensus 329 ~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 406 (515)
..-.+.|.+++|+. ....|++++. |++.|||++. .+++-.+..+.... .+..++
T Consensus 158 ----------~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~-~~pii~ls~~~~~~-------------~~S~l~ 213 (1049)
T KOG0307|consen 158 ----------QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK-KKPIIKLSDTPGRM-------------HCSVLA 213 (1049)
T ss_pred ----------CCCcccceEeccchhhhHHhhccCCCCCceeccccC-CCcccccccCCCcc-------------ceeeee
Confidence 11125799999997 4556777776 8999999997 67766666555421 133799
Q ss_pred EcCCCC-EEEEecCCC---cEEEEecCCCCcceeeeccCCCceeeEEECCCC-CeeEeecCCCeEEEecCCCCCccccCC
Q 010206 407 LSGDGG-RVATGSYSN---LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR-PSRPLGSLSGVVRRVKGADNSALDANG 481 (515)
Q Consensus 407 ~s~~~~-~l~s~s~dg---~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~l~~~~~~~~~~~~~ 481 (515)
|+|+.- .|++++.|. .|.+||++......+++++|...+.++.|.+.+ .+|+|++.|+.+.. |+....+...
T Consensus 214 WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~---wN~~tgEvl~ 290 (1049)
T KOG0307|consen 214 WHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIIC---WNPNTGEVLG 290 (1049)
T ss_pred eCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeE---ecCCCceEee
Confidence 999864 466666543 789999998777778999999999999999877 88999999999998 4444334444
Q ss_pred ccccccCCeeEEEEcCCCC-EEEEEc-CCcEEEEe
Q 010206 482 NAFDFSMKLLHLAWHPSEN-SIACAA-SNSLYMYY 514 (515)
Q Consensus 482 ~~~~~~~~i~~~~~s~~~~-~la~~~-~~~~~i~~ 514 (515)
+.-.....+..+.|.|... .+++++ ++.+-||+
T Consensus 291 ~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~s 325 (1049)
T KOG0307|consen 291 ELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYS 325 (1049)
T ss_pred ecCCCCcceeeeeecCCCcchhhhheeccceeeee
Confidence 4444467899999999987 666666 45566665
No 169
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.84 E-value=2.6e-19 Score=145.09 Aligned_cols=300 Identities=10% Similarity=0.123 Sum_probs=194.3
Q ss_pred ccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccc
Q 010206 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (515)
+|...|+|+.|..+++ |.+|..-|.|++|++.+.+.. ..++.+. .
T Consensus 12 p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~-----------------------~~~r~~g-----------~ 56 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDL-----------------------PLIRLFG-----------R 56 (323)
T ss_pred cccchheehhhccchh-hhcccccceEEEEEeecCccc-----------------------hhhhhhc-----------c
Confidence 7999999999998875 889999999999999887643 2334222 1
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcc-ccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG-ERNFG 191 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l-~~~~~ 191 (515)
..|+.+.-.| +..|.+-+.|..+.+|++..+....+...-.+.. .....++.+.++.. +.+..
T Consensus 57 ~~it~lq~~p---~d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nsl-------------gFCrfSl~~~~k~~eqll~y 120 (323)
T KOG0322|consen 57 LFITNLQSIP---NDSLDTQGRDPLLILWTIAYSAFISIHSIVVNSL-------------GFCRFSLVKKPKNSEQLLEY 120 (323)
T ss_pred ceeeceeecC---CcchhhcCCCceEEEEEccCcceEEEeeeecccc-------------ccccceeccCCCcchhheec
Confidence 5678777754 2479999999999999999876555443222110 00122233333322 00000
Q ss_pred c-C-CCCC-CCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC-CCC--EEEEe-CCCcEEEEeCCC
Q 010206 192 C-A-SNDS-SFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGE--TFISA-DDLRINLWNLEI 264 (515)
Q Consensus 192 ~-~-~~~~-~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~--~l~s~-~d~~i~iwd~~~ 264 (515)
. . +.+. .--++..-.+++-| . ...+..+.+.|..+.. ++. ++++| .+|.+.+||+.+
T Consensus 121 p~rgsde~h~~D~g~~tqv~i~d-----d-----------~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~ 184 (323)
T KOG0322|consen 121 PSRGSDETHKQDGGDTTQVQIAD-----D-----------SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLST 184 (323)
T ss_pred CCcccchhhhhccCccceeEccC-----c-----------hhccccCceeeeeccccccceEEEEEeccCCeEEEEEccC
Confidence 0 0 0000 00011111222211 0 0123446677776533 233 34456 899999999998
Q ss_pred CCcccceecccC--ccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccc
Q 010206 265 SNQSFNIVDVKP--ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 342 (515)
Q Consensus 265 ~~~~~~~~~~~~--~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (515)
+.....+....+ .....|.++|.++.|.+.- ..=++|+.+..+..|.+............... ..
T Consensus 185 ~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~gslq~~~e~~l------------kn 251 (323)
T KOG0322|consen 185 GDKIIQLPQSSKVESPNASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHSTGSLQIRKEITL------------KN 251 (323)
T ss_pred CceeeccccccccccchhhccCcceeeeechhh-cCCcCCCccccceeeeeccccCcccccceEEe------------cC
Confidence 744332211111 2345689999999998764 56678888889999988654211111111111 11
Q ss_pred cceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCC
Q 010206 343 ASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 421 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg 421 (515)
..|..+.+-||++.+|+++ |++|+||..++ .+++..++.|... |++++|+||...+|.++.|+
T Consensus 252 pGv~gvrIRpD~KIlATAGWD~RiRVyswrt-l~pLAVLkyHsag---------------vn~vAfspd~~lmAaaskD~ 315 (323)
T KOG0322|consen 252 PGVSGVRIRPDGKILATAGWDHRIRVYSWRT-LNPLAVLKYHSAG---------------VNAVAFSPDCELMAAASKDA 315 (323)
T ss_pred CCccceEEccCCcEEeecccCCcEEEEEecc-CCchhhhhhhhcc---------------eeEEEeCCCCchhhhccCCc
Confidence 4688899999999999976 49999999997 9999999999866 55999999999999999999
Q ss_pred cEEEEec
Q 010206 422 LFRVFGC 428 (515)
Q Consensus 422 ~i~iw~~ 428 (515)
+|.+|++
T Consensus 316 rISLWkL 322 (323)
T KOG0322|consen 316 RISLWKL 322 (323)
T ss_pred eEEeeec
Confidence 9999987
No 170
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.84 E-value=9.3e-20 Score=152.25 Aligned_cols=268 Identities=16% Similarity=0.220 Sum_probs=182.3
Q ss_pred ccccceEEEEECCC----CCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccc
Q 010206 33 QEVDIISAIEFDKS----GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (515)
Q Consensus 33 ~h~~~v~~v~~s~~----g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (515)
.|.+....++|+-| ..+||+|+.-|.|+|.|+..++. ...+.+|.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~-----------------------~~~~~ghG-------- 135 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQC-----------------------SKNYRGHG-------- 135 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhh-----------------------ccceeccC--------
Confidence 46777788888764 45899999999999999987764 35677887
Q ss_pred ccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccc
Q 010206 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (515)
Q Consensus 109 ~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~ 188 (515)
..|+.|.++|... ++++++|.|..|++|++++..+..++..
T Consensus 136 ----~sINeik~~p~~~-qlvls~SkD~svRlwnI~~~~Cv~VfGG---------------------------------- 176 (385)
T KOG1034|consen 136 ----GSINEIKFHPDRP-QLVLSASKDHSVRLWNIQTDVCVAVFGG---------------------------------- 176 (385)
T ss_pred ----ccchhhhcCCCCC-cEEEEecCCceEEEEeccCCeEEEEecc----------------------------------
Confidence 8899999998554 6999999999999999999876655321
Q ss_pred ccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCc
Q 010206 189 NFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
..+|...|.++.|++++.+|+++ -|.+|++|++...+.
T Consensus 177 -----------------------------------------~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f 215 (385)
T KOG1034|consen 177 -----------------------------------------VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEF 215 (385)
T ss_pred -----------------------------------------cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHH
Confidence 25899999999999999999998 799999999984321
Q ss_pred ccceec------------c------cC--ccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCc-cccccccccee
Q 010206 268 SFNIVD------------V------KP--ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ-SALCDTHSKLF 326 (515)
Q Consensus 268 ~~~~~~------------~------~~--~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~ 326 (515)
...+-. + -| .+-.-|...|-|+.|-- .++++=+-++.|..|..-. .+... .++.-
T Consensus 216 ~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~~~-~vkp~ 291 (385)
T KOG1034|consen 216 KNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEESIH-NVKPP 291 (385)
T ss_pred hhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh---hheeecccCceEEEEecchhhhhhh-ccCCC
Confidence 110000 0 00 02234667777777763 5788888888999998732 21110 00000
Q ss_pred eeccCCCccccccccccceeEE--EEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCcccee
Q 010206 327 EEQEAPGTRSFFTEIIASISDI--KFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF 403 (515)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~i~~~--~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 403 (515)
+.. ......+.--...|.-+ +|.|.++.||.|.. |.|.+||++....+..+-..|.... ..|.
T Consensus 292 es~--~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~------------~tVR 357 (385)
T KOG1034|consen 292 ESA--TTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSG------------STVR 357 (385)
T ss_pred ccc--eeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEecccc------------ceee
Confidence 000 00000011112344444 45577899999987 9999999996333222222222111 1245
Q ss_pred eEEEcCCCCEEEEecCCCcEEEEecC
Q 010206 404 ECCLSGDGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 404 ~~~~s~~~~~l~s~s~dg~i~iw~~~ 429 (515)
+.+|+.||.+|+...+|++|.-||.-
T Consensus 358 Q~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 358 QTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred eeeecccCcEEEEEeCCCcEEEEEee
Confidence 89999999999999999999999864
No 171
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.84 E-value=9.5e-19 Score=149.77 Aligned_cols=298 Identities=17% Similarity=0.272 Sum_probs=194.1
Q ss_pred cchhhhhcccccccccccccceEEEEECC-----CCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccce
Q 010206 17 WKFSQVFGERTAGEEVQEVDIISAIEFDK-----SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR 91 (515)
Q Consensus 17 w~~~~~~~~~~~~~~~~h~~~v~~v~~s~-----~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (515)
-+|..+||+....+..-..=.|+.++|.. +.++||. +|+...+... ....+...+. ..+
T Consensus 9 SKfRHVFgq~~K~e~CYddIrVs~~tWDS~fcavNPkfiAv--------i~easgGgaf--~ViPl~k~Gr---~d~--- 72 (472)
T KOG0303|consen 9 SKFRHVFGQPVKNDQCYDDIRVSRVTWDSSFCAVNPKFVAV--------IIEASGGGAF--LVIPLVKTGR---MDA--- 72 (472)
T ss_pred hhhHHHhccccchhhhhcceeeeeeeccccccccCCceEEE--------EEecCCCcce--eecccccccc---cCC---
Confidence 46778888877665555566777777754 3344443 4444433211 0011111110 000
Q ss_pred eeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCC
Q 010206 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (515)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (515)
.+-.+.+|. +.|..++|+|..| ..+++||.|.+|.+|++..+.+.....
T Consensus 73 ~~P~v~GHt------------~~vLDi~w~PfnD-~vIASgSeD~~v~vW~IPe~~l~~~lt------------------ 121 (472)
T KOG0303|consen 73 SYPLVCGHT------------APVLDIDWCPFND-CVIASGSEDTKVMVWQIPENGLTRDLT------------------ 121 (472)
T ss_pred CCCCccCcc------------ccccccccCccCC-ceeecCCCCceEEEEECCCcccccCcc------------------
Confidence 112367888 9999999999765 689999999999999987654222111
Q ss_pred CcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC-CCEEE
Q 010206 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFI 250 (515)
Q Consensus 172 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~ 250 (515)
.+. ..+.+|...|--++|+|. .+.|+
T Consensus 122 ----------------------------------------------------epv-v~L~gH~rrVg~V~wHPtA~NVLl 148 (472)
T KOG0303|consen 122 ----------------------------------------------------EPV-VELYGHQRRVGLVQWHPTAPNVLL 148 (472)
T ss_pred ----------------------------------------------------cce-EEEeecceeEEEEeecccchhhHh
Confidence 111 125799999999999996 44556
Q ss_pred Ee-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeec
Q 010206 251 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 329 (515)
Q Consensus 251 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 329 (515)
++ .|.+|.+|++.+++..+. +. |.+.|+++.|+.+| .+|++.+.|..||+||.++++.+.+- ...++
T Consensus 149 sag~Dn~v~iWnv~tgeali~--------l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v~e~-~~heG- 216 (472)
T KOG0303|consen 149 SAGSDNTVSIWNVGTGEALIT--------LD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVVSEG-VAHEG- 216 (472)
T ss_pred hccCCceEEEEeccCCceeee--------cC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEeeec-ccccC-
Confidence 65 899999999999887653 33 99999999999999 99999999999999999999875431 11111
Q ss_pred cCCCccccccccccceeEEEEccCCCEEEEE----cCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeE
Q 010206 330 EAPGTRSFFTEIIASISDIKFARNGRHILSR----DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 405 (515)
Q Consensus 330 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~----~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 405 (515)
..-..+.|-.+|..+.+| ++..+-+||..+-..++........ .+|.--
T Consensus 217 -------------~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS--------------nGvl~P 269 (472)
T KOG0303|consen 217 -------------AKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTS--------------NGVLLP 269 (472)
T ss_pred -------------CCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccC--------------CceEEe
Confidence 122345566788866565 3489999998764444322222111 113344
Q ss_pred EEcCCCCEEE-EecCCCcEEEEecCCCCcceeeecc--CCCceeeEEECCC
Q 010206 406 CLSGDGGRVA-TGSYSNLFRVFGCSEGSAESTTLEA--SKNPMRRQVQTPS 453 (515)
Q Consensus 406 ~~s~~~~~l~-s~s~dg~i~iw~~~~~~~~~~~~~~--~~~~v~~~~~~~~ 453 (515)
-|.+|.++|. .|-.|+.|+.|.+.+...-++.|.. ...|-+.+.+-|.
T Consensus 270 FyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 270 FYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred eecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccc
Confidence 5778888776 4558999999999876544444432 2345556666554
No 172
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=2.6e-19 Score=157.62 Aligned_cols=220 Identities=14% Similarity=0.223 Sum_probs=170.7
Q ss_pred EEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEE
Q 010206 39 SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 118 (515)
Q Consensus 39 ~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l 118 (515)
.|++......|+++|+..+.|+|||+.... +...+.+|. ..|+++
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl-----------------------~hr~lkdh~------------stvt~v 127 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSGCVKIWDLRAKL-----------------------IHRFLKDHQ------------STVTYV 127 (673)
T ss_pred HHHhhhhcceeeeccCcCceeeehhhHHHH-----------------------HhhhccCCc------------ceeEEE
Confidence 444444445799999999999999997433 234567787 889999
Q ss_pred EEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCC
Q 010206 119 RWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS 198 (515)
Q Consensus 119 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 198 (515)
.+ ...+.+|++++..|.|.+..+.++.....+.
T Consensus 128 ~Y--N~~DeyiAsvs~gGdiiih~~~t~~~tt~f~--------------------------------------------- 160 (673)
T KOG4378|consen 128 DY--NNTDEYIASVSDGGDIIIHGTKTKQKTTTFT--------------------------------------------- 160 (673)
T ss_pred Ee--cCCcceeEEeccCCcEEEEecccCcccccee---------------------------------------------
Confidence 99 4566799999999999999988764222111
Q ss_pred CCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEE-e-CCCcEEEEeCCCCCcccceecccC
Q 010206 199 FPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIVDVKP 276 (515)
Q Consensus 199 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~ 276 (515)
.+....|+-+.++|..+.+++ + ++|.|.+||+....+.+.
T Consensus 161 --------------------------------~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~------ 202 (673)
T KOG4378|consen 161 --------------------------------IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFH------ 202 (673)
T ss_pred --------------------------------cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccc------
Confidence 112244567888888777765 4 899999999987665543
Q ss_pred ccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCE
Q 010206 277 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH 356 (515)
Q Consensus 277 ~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 356 (515)
-.+.|..+...|+|+|..+.+|++-+.|..|.+||.+........ ....+...++|+++|.+
T Consensus 203 -~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l-----------------~y~~Plstvaf~~~G~~ 264 (673)
T KOG4378|consen 203 -ASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL-----------------TYSHPLSTVAFSECGTY 264 (673)
T ss_pred -hhhhccCCcCcceecCCccceEEEecccceEEEeeccccccccee-----------------eecCCcceeeecCCceE
Confidence 446799999999999998889999999999999999876543221 11257899999999999
Q ss_pred EEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCC
Q 010206 357 ILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 411 (515)
Q Consensus 357 l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 411 (515)
|++|+. |.|..||++....++.++..|... |++++|-|..
T Consensus 265 L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~s---------------Vt~vafq~s~ 305 (673)
T KOG4378|consen 265 LCAGNSKGELIAYDMRSTKAPVAVRSAHDAS---------------VTRVAFQPSP 305 (673)
T ss_pred EEeecCCceEEEEecccCCCCceEeeecccc---------------eeEEEeeecc
Confidence 999987 999999999878899999999876 5578887654
No 173
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=2.1e-18 Score=149.93 Aligned_cols=197 Identities=16% Similarity=0.271 Sum_probs=149.2
Q ss_pred ccCcCCeEEEEecCC-CCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010206 231 HAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 308 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i 308 (515)
.+|...|.+++|+.. .+.|++| .|.+|++||+.++++.. .+..|...|.+++|+|..+..|++|+.|+++
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~--------s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V 311 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKS--------SITHHGKKVQTLEWHPYEPSVLLSGSYDGTV 311 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcce--------ehhhcCCceeEEEecCCCceEEEeccccceE
Confidence 589999999999876 5566777 79999999999887653 5667999999999999988999999999999
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCC-EEEEEcC-CeEEEEEeeCCCCCeeeEeeeccc
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HILSRDY-MTLKLWDINMDSGPVATFQVHEHL 386 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~ 386 (515)
.+.|.|..... ...|.. .+.|..++|.|... .++++.+ |+|+-+|++..++++.++..|...
T Consensus 312 ~l~D~R~~~~s---~~~wk~-------------~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ 375 (463)
T KOG0270|consen 312 ALKDCRDPSNS---GKEWKF-------------DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDE 375 (463)
T ss_pred EeeeccCcccc---CceEEe-------------ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCC
Confidence 99999952211 112221 15789999999554 4444555 999999999988999999999976
Q ss_pred cccccccccCCCccceeeEEEcCCC-CEEEEecCCCcEEEEecCCCCcceeeeccCC---CceeeEEECCCCC-eeEeec
Q 010206 387 RPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCSEGSAESTTLEASK---NPMRRQVQTPSRP-SRPLGS 461 (515)
Q Consensus 387 ~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~-~l~s~~ 461 (515)
+ .++++++.- .+|+|++.|+.|++|++...... ....|. ....+.++.|+-. +++.|+
T Consensus 376 I---------------Sgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~--~v~~~~~~~~rl~c~~~~~~~a~~la~GG 438 (463)
T KOG0270|consen 376 I---------------SGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK--SVKEHSFKLGRLHCFALDPDVAFTLAFGG 438 (463)
T ss_pred c---------------ceEEecCCCCcceeeccccceEEEEeecCCCCc--ccccccccccceeecccCCCcceEEEecC
Confidence 3 378887754 46889999999999999754322 222222 2244556666655 567777
Q ss_pred CCCeEEE
Q 010206 462 LSGVVRR 468 (515)
Q Consensus 462 ~d~~v~l 468 (515)
..+.+++
T Consensus 439 ~k~~~~v 445 (463)
T KOG0270|consen 439 EKAVLRV 445 (463)
T ss_pred ccceEEE
Confidence 7777777
No 174
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=2.3e-18 Score=164.97 Aligned_cols=311 Identities=15% Similarity=0.237 Sum_probs=204.8
Q ss_pred ceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeE
Q 010206 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (515)
Q Consensus 37 ~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 116 (515)
+-..+.|+|-...+++++..-.|+|||.+.++.. ..|..+.+ ....|+
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l-----------------------~~F~n~~~---------~~t~Vs 1113 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLL-----------------------NGFDNGAF---------PDTRVS 1113 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCcee-----------------------ccccCCCC---------CCCccc
Confidence 5678899998889999987779999999877643 22222211 126699
Q ss_pred EEEEeecCCCcEEEeeeCCCeEEEEEccCC---eeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccC
Q 010206 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEK---KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (515)
Q Consensus 117 ~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~ 193 (515)
.+++....|..++++++.||.|+||+-... +...+.....-. +-...+.....-+.|-.....|
T Consensus 1114 ~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls------~~~~~~r~~~~v~dWqQ~~G~L------- 1180 (1387)
T KOG1517|consen 1114 DLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLS------DQLPGARGTGLVVDWQQQSGHL------- 1180 (1387)
T ss_pred eeeeecccchhheeeeccCceEEEecccccccCCceeEEeecccc------ccCccCCCCCeeeehhhhCCeE-------
Confidence 999988888889999999999999975432 222221111100 0000000000023344333333
Q ss_pred CCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC-CCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 194 SNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 194 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
++++.-..|+|||+ .. |. .......+....|+++.-+. .|+.+++| .||.|++||.+.......+
T Consensus 1181 -----l~tGd~r~IRIWDa--~~-E~-----~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v 1247 (1387)
T KOG1517|consen 1181 -----LVTGDVRSIRIWDA--HK-EQ-----VVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLV 1247 (1387)
T ss_pred -----EecCCeeEEEEEec--cc-ce-----eEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccc
Confidence 56666889999992 21 11 11111234455677776543 47899999 9999999999866543222
Q ss_pred ecccCccccccCCc--eEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 272 VDVKPANMEDLTEV--ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 272 ~~~~~~~~~~~~~~--i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
. ..+.|+.. |..+.+.+.|-..|++|+.+|.|++||+|.... .. .+..... ....+..+++.
T Consensus 1248 ~-----~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-e~---~~~iv~~-------~~yGs~lTal~ 1311 (1387)
T KOG1517|consen 1248 C-----VYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-ET---FLTIVAH-------WEYGSALTALT 1311 (1387)
T ss_pred e-----eecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-cc---cceeeec-------cccCccceeee
Confidence 1 34567766 999999998745699999999999999998521 11 1111000 00012589999
Q ss_pred EccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecC
Q 010206 350 FARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 350 ~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~ 429 (515)
.+++...+|+|+.+.|+||++. ++.+..++.+.... ...+..+.+++|+|-.-+||.|+.|..|.||...
T Consensus 1312 VH~hapiiAsGs~q~ikIy~~~--G~~l~~~k~n~~F~--------~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1312 VHEHAPIIASGSAQLIKIYSLS--GEQLNIIKYNPGFM--------GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred eccCCCeeeecCcceEEEEecC--hhhhcccccCcccc--------cCcCCCcceeeecchhHhhhhccCCceEEEeecC
Confidence 9999999999988999999997 66666665443322 2344456799999999999999999999999877
Q ss_pred CC
Q 010206 430 EG 431 (515)
Q Consensus 430 ~~ 431 (515)
..
T Consensus 1382 k~ 1383 (1387)
T KOG1517|consen 1382 KP 1383 (1387)
T ss_pred Cc
Confidence 54
No 175
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.83 E-value=7e-19 Score=156.40 Aligned_cols=205 Identities=17% Similarity=0.241 Sum_probs=159.3
Q ss_pred EEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceee
Q 010206 248 TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 327 (515)
Q Consensus 248 ~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 327 (515)
+++++.||.+.+.+-. ++.. .....|.+.+.+-.|+|+| .-|++.+.||.|++|.- +|-+...
T Consensus 78 ~~i~s~DGkf~il~k~-~rVE--------~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSr-sGMLRSt------ 140 (737)
T KOG1524|consen 78 LLICSNDGRFVILNKS-ARVE--------RSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSR-SGMLRST------ 140 (737)
T ss_pred EEEEcCCceEEEeccc-chhh--------hhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEec-cchHHHH------
Confidence 3444488988887643 2211 2567899999999999999 89999999999999984 4433111
Q ss_pred eccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEE
Q 010206 328 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 407 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 407 (515)
+.....+|+|++|.|+...++.+..+.+.|=.+.. ...+-.++.|++. |.++.|
T Consensus 141 ----------l~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~-n~k~i~WkAHDGi---------------iL~~~W 194 (737)
T KOG1524|consen 141 ----------VVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAA-NSKIIRWRAHDGL---------------VLSLSW 194 (737)
T ss_pred ----------HhhcCceeEEEEECCCCCceEEecCCeEEEeeccc-ccceeEEeccCcE---------------EEEeec
Confidence 11122579999999998888877767888888876 5566678889887 569999
Q ss_pred cCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCcccccc
Q 010206 408 SGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFS 487 (515)
Q Consensus 408 s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~ 487 (515)
++.++++++|++|-+.++||-. +..+..-..|..++++++|.|+ +.++.+|. .+.|+ .++. .
T Consensus 195 ~~~s~lI~sgGED~kfKvWD~~--G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~---~~p~-----------~ 256 (737)
T KOG1524|consen 195 STQSNIIASGGEDFRFKIWDAQ--GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARF---SSPR-----------V 256 (737)
T ss_pred CccccceeecCCceeEEeeccc--CcccccCChhccceeeeeeccc-cceeeeee-eeeee---cCCC-----------c
Confidence 9999999999999999999976 3455677789999999999999 66666653 34455 2222 5
Q ss_pred CCeeEEEEcCCCCEEEEEcCCcEEEE
Q 010206 488 MKLLHLAWHPSENSIACAASNSLYMY 513 (515)
Q Consensus 488 ~~i~~~~~s~~~~~la~~~~~~~~i~ 513 (515)
+.|..++||+||..+++|+.+|.+++
T Consensus 257 GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 257 GSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred cceEEEEEcCCCceeeccccCceEEE
Confidence 78999999999999999999987765
No 176
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.7e-17 Score=133.02 Aligned_cols=262 Identities=14% Similarity=0.154 Sum_probs=176.7
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccccee
Q 010206 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (515)
Q Consensus 36 ~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (515)
..|.+-+++|.+++|++|..+|.|.+..+...... -+..|.-.....+++|+ ++|
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~-------------sa~~~gk~~iv~eqahd------------gpi 65 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSG-------------SAEPPGKLKIVPEQAHD------------GPI 65 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcc-------------ccCCCCCcceeeccccC------------CCe
Confidence 34666789999999999999999999998643221 01122222334468888 999
Q ss_pred EEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCC
Q 010206 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (515)
Q Consensus 116 ~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 195 (515)
+.++|. +.+|++++ ||.|+-|..++.....-
T Consensus 66 y~~~f~----d~~Lls~g-dG~V~gw~W~E~~es~~-------------------------------------------- 96 (325)
T KOG0649|consen 66 YYLAFH----DDFLLSGG-DGLVYGWEWNEEEESLA-------------------------------------------- 96 (325)
T ss_pred eeeeee----hhheeecc-CceEEEeeehhhhhhcc--------------------------------------------
Confidence 999994 23666655 59999998775432100
Q ss_pred CCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecc
Q 010206 196 DSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 274 (515)
Q Consensus 196 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~ 274 (515)
.-++|. ... +.+. -.-.-..|+++...|..+-++.+ .|+.++.||+++++...
T Consensus 97 ----------~K~lwe-----~~~-----P~~~-~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r----- 150 (325)
T KOG0649|consen 97 ----------TKRLWE-----VKI-----PMQV-DAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR----- 150 (325)
T ss_pred ----------chhhhh-----hcC-----cccc-CcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE-----
Confidence 001111 000 0000 01112568899999876666655 89999999999887553
Q ss_pred cCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccc-cceeEEEEccC
Q 010206 275 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII-ASISDIKFARN 353 (515)
Q Consensus 275 ~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~ 353 (515)
.+++|++.|.+++-.... ..+++|+.||++|+||.++++.+. .++..+. ...+..|. ..|.+++.+
T Consensus 151 ---~~rGHtDYvH~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~v~----~ie~yk~---~~~lRp~~g~wigala~~-- 217 (325)
T KOG0649|consen 151 ---EYRGHTDYVHSVVGRNAN-GQILSGAEDGTVRVWDTKTQKHVS----MIEPYKN---PNLLRPDWGKWIGALAVN-- 217 (325)
T ss_pred ---EEcCCcceeeeeeecccC-cceeecCCCccEEEEeccccceeE----EeccccC---hhhcCcccCceeEEEecc--
Confidence 779999999999985544 589999999999999999987542 2222111 11233332 357777765
Q ss_pred CCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecC
Q 010206 354 GRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 354 ~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~ 429 (515)
..+|+.|....+.+|.++. ..+...+...... ..+.|- .+.+++++..+.|.-|.+.
T Consensus 218 edWlvCGgGp~lslwhLrs-se~t~vfpipa~v----------------~~v~F~--~d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 218 EDWLVCGGGPKLSLWHLRS-SESTCVFPIPARV----------------HLVDFV--DDCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred CceEEecCCCceeEEeccC-CCceEEEecccce----------------eEeeee--cceEEEeccccceeeeeec
Confidence 5599998888999999996 7777777644322 246664 3467788888899999886
No 177
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.82 E-value=2.6e-18 Score=141.16 Aligned_cols=257 Identities=13% Similarity=0.146 Sum_probs=176.7
Q ss_pred eccCcCCeEEEEecCC-CCEEEEe-C---C----CcEEEEeCCCCCcccceecccC-cccc-ccCCceEEEEEecCCCcE
Q 010206 230 AHAHDYHINSISNNSD-GETFISA-D---D----LRINLWNLEISNQSFNIVDVKP-ANME-DLTEVITSAEFHPTHCNM 298 (515)
Q Consensus 230 ~~~~~~~v~~~~~~~~-~~~l~s~-~---d----~~i~iwd~~~~~~~~~~~~~~~-~~~~-~~~~~i~~i~~~p~~~~~ 298 (515)
+..|.+.|..++-+|. .+.|+++ . | -.+.||.+.......+...+.. ..+. .+-+.|.|+.|.|++ ..
T Consensus 59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns-~k 137 (370)
T KOG1007|consen 59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS-DK 137 (370)
T ss_pred hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC-Ce
Confidence 3567889999999995 4455555 2 2 2467999875543311100000 1122 345689999999998 67
Q ss_pred EEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEcc--CCCEEEEEcCCeEEEEEeeCCCCC
Q 010206 299 LAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR--NGRHILSRDYMTLKLWDINMDSGP 376 (515)
Q Consensus 299 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~s~~~~~i~iwd~~~~~~~ 376 (515)
+++-. |..|.+|++..+..+...+..-. -.+|....++-+|+| +|..+++.+++++..||+++..+.
T Consensus 138 lasm~-dn~i~l~~l~ess~~vaev~ss~----------s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~ 206 (370)
T KOG1007|consen 138 LASMD-DNNIVLWSLDESSKIVAEVLSSE----------SAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKN 206 (370)
T ss_pred eEEec-cCceEEEEcccCcchheeecccc----------cccccceecccccCCCCccceEEEeCCCcEEEEEccchhhh
Confidence 77544 88999999988765322111111 122445688889998 899999999999999999973333
Q ss_pred eeeEeeeccccccccccccCCCccceeeEEEcCCCCE-EEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCC-
Q 010206 377 VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR-VATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR- 454 (515)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~- 454 (515)
...-..|... |..+.|.|+.++ |+++++||.|+|||.+..+..++++.+|...+.++.|.|.-
T Consensus 207 ~sI~dAHgq~---------------vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hd 271 (370)
T KOG1007|consen 207 NSIEDAHGQR---------------VRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHD 271 (370)
T ss_pred cchhhhhcce---------------eeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccc
Confidence 3333444433 458999998775 78999999999999998888889999999999999999875
Q ss_pred CeeEeecCCCeEEE-----ec-------CCC--------------CCccccCCccccccCCeeEEEEcCCCCEEE-EEcC
Q 010206 455 PSRPLGSLSGVVRR-----VK-------GAD--------------NSALDANGNAFDFSMKLLHLAWHPSENSIA-CAAS 507 (515)
Q Consensus 455 ~~l~s~~~d~~v~l-----~~-------~~~--------------~~~~~~~~~~~~~~~~i~~~~~s~~~~~la-~~~~ 507 (515)
+++++|+.|..|.| .. ..+ +.+.-.....-+|...|++++||.-..++. +-+-
T Consensus 272 qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSY 351 (370)
T KOG1007|consen 272 QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSY 351 (370)
T ss_pred eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEecc
Confidence 67899999999988 11 000 000000111226889999999999888866 5565
Q ss_pred CcEEEE
Q 010206 508 NSLYMY 513 (515)
Q Consensus 508 ~~~~i~ 513 (515)
||-.|.
T Consensus 352 DGRviI 357 (370)
T KOG1007|consen 352 DGRVII 357 (370)
T ss_pred CceEEe
Confidence 665443
No 178
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.82 E-value=4.6e-18 Score=139.70 Aligned_cols=203 Identities=18% Similarity=0.258 Sum_probs=156.8
Q ss_pred cCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEec--CCCcEEEEEecCCeEE
Q 010206 232 AHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP--THCNMLAYSSSKGSIR 309 (515)
Q Consensus 232 ~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p--~~~~~l~~~~~dg~i~ 309 (515)
.+-+.|.|+.|.|++..+++-.|..|.+|++.........+..+ ....+....++-+|+| ++ +.++ ...|+++.
T Consensus 121 eavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss--~s~e~~~~ftsg~WspHHdg-nqv~-tt~d~tl~ 196 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSS--ESAEMRHSFTSGAWSPHHDG-NQVA-TTSDSTLQ 196 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeeccc--ccccccceecccccCCCCcc-ceEE-EeCCCcEE
Confidence 55678999999999999998889999999998776532222111 1223567788999999 44 5555 46789999
Q ss_pred EEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCE-EEEEcC-CeEEEEEeeCCCCCeeeEeeecccc
Q 010206 310 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH-ILSRDY-MTLKLWDINMDSGPVATFQVHEHLR 387 (515)
Q Consensus 310 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~ 387 (515)
.||+|+.+.... +-..|...+..+.|+|+.++ |++++| |.|+|||.++...+++.+.+|..+
T Consensus 197 ~~D~RT~~~~~s---------------I~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHW- 260 (370)
T KOG1007|consen 197 FWDLRTMKKNNS---------------IEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHW- 260 (370)
T ss_pred EEEccchhhhcc---------------hhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceE-
Confidence 999998654321 12456678999999997665 556665 999999999988899999999988
Q ss_pred ccccccccCCCccceeeEEEcCCC-CEEEEecCCCcEEEEecCCCC------------------------c----ceeee
Q 010206 388 PKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCSEGS------------------------A----ESTTL 438 (515)
Q Consensus 388 ~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~s~dg~i~iw~~~~~~------------------------~----~~~~~ 438 (515)
|+++.|+|.- ++|.+|+.|..|.+|...+-. . ++.++
T Consensus 261 --------------vW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty 326 (370)
T KOG1007|consen 261 --------------VWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY 326 (370)
T ss_pred --------------EEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccc
Confidence 7899999964 567799999999999764321 0 12356
Q ss_pred ccCCCceeeEEECCCCCe-eEeecCCCeEEE
Q 010206 439 EASKNPMRRQVQTPSRPS-RPLGSLSGVVRR 468 (515)
Q Consensus 439 ~~~~~~v~~~~~~~~~~~-l~s~~~d~~v~l 468 (515)
..|.+.|.+++|+...++ +|+-|.||.+.+
T Consensus 327 dehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 327 DEHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred cccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 689999999999998887 577899999988
No 179
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.81 E-value=8.4e-18 Score=149.65 Aligned_cols=208 Identities=13% Similarity=0.180 Sum_probs=152.3
Q ss_pred cEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCccc
Q 010206 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS 206 (515)
Q Consensus 127 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~ 206 (515)
..|+.++.||.+.+.+-... .......+ .+.+. +-.|+|||..| ++.++||.
T Consensus 76 d~~~i~s~DGkf~il~k~~r-VE~sv~AH--------~~A~~-------~gRW~~dGtgL------------lt~GEDG~ 127 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSAR-VERSISAH--------AAAIS-------SGRWSPDGAGL------------LTAGEDGV 127 (737)
T ss_pred ceEEEEcCCceEEEecccch-hhhhhhhh--------hhhhh-------hcccCCCCcee------------eeecCCce
Confidence 47888999999988864432 11111111 23333 67899999999 99999999
Q ss_pred EEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCce
Q 010206 207 LRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVI 286 (515)
Q Consensus 207 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 286 (515)
|++|. ..++.... +......|.|++|.|+.+.++.+..+.+.+=-+....... ....|.+-|
T Consensus 128 iKiWS-----rsGMLRSt-----l~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i--------~WkAHDGii 189 (737)
T KOG1524|consen 128 IKIWS-----RSGMLRST-----VVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKII--------RWRAHDGLV 189 (737)
T ss_pred EEEEe-----ccchHHHH-----HhhcCceeEEEEECCCCCceEEecCCeEEEeeccccccee--------EEeccCcEE
Confidence 99998 33322211 2345578999999999999998877777776665443332 668899999
Q ss_pred EEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEE
Q 010206 287 TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLK 366 (515)
Q Consensus 287 ~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~ 366 (515)
.++.|+|.. +++++|+.|-..++||-....+.. -..|.-+|++++|.|+ +.++.++.++++
T Consensus 190 L~~~W~~~s-~lI~sgGED~kfKvWD~~G~~Lf~-----------------S~~~ey~ITSva~npd-~~~~v~S~nt~R 250 (737)
T KOG1524|consen 190 LSLSWSTQS-NIIASGGEDFRFKIWDAQGANLFT-----------------SAAEEYAITSVAFNPE-KDYLLWSYNTAR 250 (737)
T ss_pred EEeecCccc-cceeecCCceeEEeecccCccccc-----------------CChhccceeeeeeccc-cceeeeeeeeee
Confidence 999999998 999999999999999975543321 2446678999999999 777777776666
Q ss_pred EEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEE
Q 010206 367 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 426 (515)
Q Consensus 367 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw 426 (515)
+=..+. ..|+.++||+||..++.|...|.+.+=
T Consensus 251 ~~~p~~---------------------------GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 251 FSSPRV---------------------------GSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred ecCCCc---------------------------cceEEEEEcCCCceeeccccCceEEEe
Confidence 211111 115689999999999999988887653
No 180
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.81 E-value=1.5e-15 Score=147.10 Aligned_cols=368 Identities=21% Similarity=0.333 Sum_probs=244.8
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
...|...+.++.|.+.+..++.++.|+.+.+|+...... ....+.++..
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----------------------~~~~~~~~~~--------- 109 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK----------------------LIKSLEGLHD--------- 109 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCce----------------------eEEEEeccCC---------
Confidence 458999999999999999999999999999999876541 1123333220
Q ss_pred ccceeEEEEEeecCCCc-EEEeeeC-CCeEEEEEccC-CeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccc
Q 010206 111 IEEKINKIRWCQSANSA-LYLLSTN-DKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~-~l~~~~~-d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~ 187 (515)
..+..+.+. ..++. .++..+. |+.+.+|+... .........+. ..+. .+.++|+++.+
T Consensus 110 --~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--------~~v~-------~~~~~~~~~~~- 170 (466)
T COG2319 110 --SSVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHS--------ESVT-------SLAFSPDGKLL- 170 (466)
T ss_pred --CceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCc--------ccEE-------EEEECCCCCEE-
Confidence 246777775 45555 4555444 99999999997 44444433331 2222 67899999876
Q ss_pred cccccCCCCCCCCCCC-cccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCC-EEEEe-CCCcEEEEeCCC
Q 010206 188 RNFGCASNDSSFPPGG-VSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEI 264 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~ 264 (515)
+.++. ++.+++|+ ... ...... +.+|...|.+++|+|++. .++++ .|+.|++||...
T Consensus 171 -----------~~~~~~~~~~~~~~--~~~------~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~ 230 (466)
T COG2319 171 -----------ASGSSLDGTIKLWD--LRT------GKPLST-LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST 230 (466)
T ss_pred -----------EecCCCCCceEEEE--cCC------CceEEe-eccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCC
Confidence 77765 99999999 332 112222 356899999999999998 55554 799999998774
Q ss_pred CCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccc
Q 010206 265 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 344 (515)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (515)
...... .+..|.... -..|+|++ ..+++++.|+.+++|+++..... ... +.+|...
T Consensus 231 ~~~~~~-------~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~---~~~------------~~~~~~~ 286 (466)
T COG2319 231 GKLLRS-------TLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSL---LRT------------LSGHSSS 286 (466)
T ss_pred CcEEee-------ecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcE---EEE------------EecCCcc
Confidence 332211 245566664 33899998 88899999999999999876530 011 1344578
Q ss_pred eeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEe--eeccccccccccccCCCccceeeEEEcCCCCEEEEe-cCC
Q 010206 345 ISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQ--VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYS 420 (515)
Q Consensus 345 i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-s~d 420 (515)
+.++.|+|++..+++++ ++.+.+||... ........ .|... +..+.|.+++..++.+ ..|
T Consensus 287 v~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~d 350 (466)
T COG2319 287 VLSVAFSPDGKLLASGSSDGTVRLWDLET-GKLLSSLTLKGHEGP---------------VSSLSFSPDGSLLVSGGSDD 350 (466)
T ss_pred EEEEEECCCCCEEEEeeCCCcEEEEEcCC-CceEEEeeecccCCc---------------eEEEEECCCCCEEEEeecCC
Confidence 99999999888888865 47899998875 44444433 33321 3467774343555555 688
Q ss_pred CcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEe-ecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCC
Q 010206 421 NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPL-GSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSE 499 (515)
Q Consensus 421 g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 499 (515)
+.+.+|++.... ........ ..+..+.+.+ ...... +..++.+.+.+..... .......+...+....+++++
T Consensus 351 ~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 424 (466)
T COG2319 351 GTIRLWDLRTGK-PLKTLEGH-SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGS---LLRNLDGHTSRVTSLDFSPDG 424 (466)
T ss_pred CcEEeeecCCCc-eeEEecCC-ceEEEEEECC-CCCEEEEecCCCceEEEecccCe---eeeeccCCCCcEEEEEECCCC
Confidence 999999998764 22222222 2278888888 533444 6788888882222111 111111111689999999999
Q ss_pred CEEEEEc-CCcEEEEe
Q 010206 500 NSIACAA-SNSLYMYY 514 (515)
Q Consensus 500 ~~la~~~-~~~~~i~~ 514 (515)
..++.++ .+.+.+|.
T Consensus 425 ~~~~~~~~~~~~~~~~ 440 (466)
T COG2319 425 KSLASGSSDNTIRLWD 440 (466)
T ss_pred cEEEEecCCCcEEEEe
Confidence 9999754 45577664
No 181
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.80 E-value=7.8e-18 Score=158.55 Aligned_cols=287 Identities=14% Similarity=0.197 Sum_probs=187.4
Q ss_pred cccccchhhhhcccccccccccccceEEEEECC-CCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccce
Q 010206 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR 91 (515)
Q Consensus 13 ~~~~w~~~~~~~~~~~~~~~~h~~~v~~v~~s~-~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (515)
....|.+..- ..+.....-...|+|++|+| +..++|.|..+|.|.+||+..+... |...
T Consensus 223 ~~~vW~~~~p---~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~-----------------~~s~ 282 (555)
T KOG1587|consen 223 VLLVWSLKNP---NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDT-----------------PPSG 282 (555)
T ss_pred eEEEEecCCC---CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCC-----------------CCcc
Confidence 4567887753 22323345578999999999 6778889999999999999876542 0000
Q ss_pred eeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEE-EeeccCCcccCCCCCCccCC
Q 010206 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKK-VFDWNVHPEKAAGNGPIFGS 170 (515)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~ 170 (515)
.-.....|. .+|..+.|..++.+.-+++++.||.|..|+++.-.... ......... .+.-...
T Consensus 283 ls~~~~sh~------------~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~----~~~~~~~ 346 (555)
T KOG1587|consen 283 LSALEVSHS------------EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKH----KGQQSSK 346 (555)
T ss_pred cccccccCC------------cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccc----ccccccc
Confidence 111233455 88999999887766679999999999999877543211 111000000 0000111
Q ss_pred CCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeeccccccc--ccceeeeeeccCcCCeEEEEecCCCCE
Q 010206 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNL--VAGCRRIYAHAHDYHINSISNNSDGET 248 (515)
Q Consensus 171 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~ 248 (515)
....+.+.|.+.... .++.|+..|.|.--. ..+..... ..+.... ...|.+.|.++.++|-+..
T Consensus 347 ~~~~t~~~F~~~~p~-----------~FiVGTe~G~v~~~~--r~g~~~~~~~~~~~~~~-~~~h~g~v~~v~~nPF~~k 412 (555)
T KOG1587|consen 347 AVGATSLKFEPTDPN-----------HFIVGTEEGKVYKGC--RKGYTPAPEVSYKGHST-FITHIGPVYAVSRNPFYPK 412 (555)
T ss_pred ccceeeEeeccCCCc-----------eEEEEcCCcEEEEEe--ccCCccccccccccccc-ccccCcceEeeecCCCccc
Confidence 122225556554332 248888889887533 12222111 1111222 3578899999999997776
Q ss_pred EEEe-CCCcEEEEeCC-CCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCccccccccccee
Q 010206 249 FISA-DDLRINLWNLE-ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF 326 (515)
Q Consensus 249 l~s~-~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 326 (515)
++.+ .|-+++||.-. .....+ .+..+...+++++|||..+.+|+++..||.|.+||+........ ..
T Consensus 413 ~fls~gDW~vriWs~~~~~~Pl~--------~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv--~s- 481 (555)
T KOG1587|consen 413 NFLSVGDWTVRIWSEDVIASPLL--------SLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPV--LS- 481 (555)
T ss_pred eeeeeccceeEeccccCCCCcch--------hhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCc--cc-
Confidence 6654 89999999876 333222 34556777999999999989999999999999999976543111 00
Q ss_pred eeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEee
Q 010206 327 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDIN 371 (515)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~ 371 (515)
..-+....+.+.|+++|+.|+.|++ |++.+|++.
T Consensus 482 -----------~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 482 -----------QKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred -----------ccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 1111356778888999999999998 999999996
No 182
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=9.6e-18 Score=143.57 Aligned_cols=299 Identities=15% Similarity=0.125 Sum_probs=201.4
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
+.|++|.| +.++++|++|+.|..+++|++...-..++
T Consensus 57 GCiNAlqF--S~N~~~L~SGGDD~~~~~W~~de~~~~k~----------------------------------------- 93 (609)
T KOG4227|consen 57 GCINALQF--SHNDRFLASGGDDMHGRVWNVDELMVRKT----------------------------------------- 93 (609)
T ss_pred cccceeee--ccCCeEEeecCCcceeeeechHHHHhhcC-----------------------------------------
Confidence 99999999 56688999999999999999875321111
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
.++....-..|...|.|++|+....++.+| .+++|.+.|+++.+.+...
T Consensus 94 ------------------------------~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~ 143 (609)
T KOG4227|consen 94 ------------------------------PKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVA 143 (609)
T ss_pred ------------------------------CCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeee
Confidence 011111124577899999999999999998 8999999999987654321
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
.-....+.|+.+..+|.. +.|++.+.++.|.+||.+..... ...+... ........+.|+
T Consensus 144 ------~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~---~~~~~~A----------N~~~~F~t~~F~ 203 (609)
T KOG4227|consen 144 ------NENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNP---ISLVLPA----------NSGKNFYTAEFH 203 (609)
T ss_pred ------cccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCC---Cceeeec----------CCCccceeeeec
Confidence 112234589999999997 89999999999999999876421 1111111 122457888999
Q ss_pred cC-CCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecC
Q 010206 352 RN-GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 352 ~~-~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~ 429 (515)
|. ..+|++.+. +-+.+||.+++..++....+....... -..-+++.|+|.|+.+++--....-.+||+.
T Consensus 204 P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~---------~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~ 274 (609)
T KOG4227|consen 204 PETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQE---------NTEWMGSLWSPSGNQFMSIRRGKCPLYFDFI 274 (609)
T ss_pred CCCceeEEeccccCCCCceeeccccchHHhhhccccCccc---------chhhhheeeCCCCCeehhhhccCCCEEeeee
Confidence 95 456666766 889999999866666554433322110 0012378999999999887766667788887
Q ss_pred CCCcceeeeccC------CCceeeEEECCCCCeeEeecCCCeEEEec-------------CCCCC--ccc--cCC---cc
Q 010206 430 EGSAESTTLEAS------KNPMRRQVQTPSRPSRPLGSLSGVVRRVK-------------GADNS--ALD--ANG---NA 483 (515)
Q Consensus 430 ~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~s~~~d~~v~l~~-------------~~~~~--~~~--~~~---~~ 483 (515)
+..+.+...... ...+.+++|..+. .+++|+.+-.+.+++ |+... +.+ +.. .+
T Consensus 275 S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VL 353 (609)
T KOG4227|consen 275 SQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVL 353 (609)
T ss_pred cccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEE
Confidence 643333222211 1235566776554 499999998888711 11000 000 011 12
Q ss_pred ccccCCeeEEEEcCCCCEEEEEc-CCcEEEEe
Q 010206 484 FDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 514 (515)
Q Consensus 484 ~~~~~~i~~~~~s~~~~~la~~~-~~~~~i~~ 514 (515)
.+|...++.+.|+|-.++|++++ .+.+.||+
T Consensus 354 rGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 354 RGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred ecccccccceeecCCcceEeccchhhheeccc
Confidence 36788899999999998888554 77788986
No 183
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=1.8e-18 Score=154.89 Aligned_cols=273 Identities=15% Similarity=0.165 Sum_probs=186.8
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
...|.+.|+.++|.|....|++++.||.|++|++...... -..+...+.+|++|+
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s---------------~~~~~epi~tfraH~---------- 344 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS---------------AEKDVEPILTFRAHE---------- 344 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc---------------cccceeeeEEEeccc----------
Confidence 4578999999999999999999999999999999432110 011344566799998
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
++|.|++. ..++.++++|+.||+|+.|++.... ... ..
T Consensus 345 --gPVl~v~v--~~n~~~~ysgg~Dg~I~~w~~p~n~-dp~-------------------------------ds------ 382 (577)
T KOG0642|consen 345 --GPVLCVVV--PSNGEHCYSGGIDGTIRCWNLPPNQ-DPD-------------------------------DS------ 382 (577)
T ss_pred --CceEEEEe--cCCceEEEeeccCceeeeeccCCCC-Ccc-------------------------------cc------
Confidence 99999999 5678899999999999999976221 000 00
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
+| .......+.||...|+.+++++....|+++ .||++++|+......+
T Consensus 383 -------------------~d-----------p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~- 431 (577)
T KOG0642|consen 383 -------------------YD-----------PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPC- 431 (577)
T ss_pred -------------------cC-----------cchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCcc-
Confidence 00 000011147999999999999999899998 8999999998755441
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
++ ......+...++.+-...+.+.++...-+.-.++++..... ...++....+.+. -...+..+.
T Consensus 432 -~f-----~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~----~~~~~s~~~~~~~-----~~~~in~vV 496 (577)
T KOG0642|consen 432 -TF-----GEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSD----LLIFESSASPGPR-----RYPQINKVV 496 (577)
T ss_pred -cc-----CCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhh----eeeccccCCCccc-----ccCccceEE
Confidence 11 11112233456666443322333333333333444433321 2333322222111 113477788
Q ss_pred EccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEec
Q 010206 350 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 428 (515)
Q Consensus 350 ~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~ 428 (515)
++|.+.+.+++.+ +.|+++|..+ ++++.....|... ++++++.|+|-+|++++.|+.+++|.+
T Consensus 497 s~~~~~~~~~~hed~~Ir~~dn~~-~~~l~s~~a~~~s---------------vtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 497 SHPTADITFTAHEDRSIRFFDNKT-GKILHSMVAHKDS---------------VTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred ecCCCCeeEecccCCceecccccc-cccchheeeccce---------------ecceeecCCCceEEeecCCceeehhhc
Confidence 8998888888765 9999999997 8888888888765 559999999999999999999999999
Q ss_pred CCCC
Q 010206 429 SEGS 432 (515)
Q Consensus 429 ~~~~ 432 (515)
....
T Consensus 561 d~k~ 564 (577)
T KOG0642|consen 561 DVKT 564 (577)
T ss_pred cchh
Confidence 7653
No 184
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=3.1e-18 Score=153.45 Aligned_cols=258 Identities=19% Similarity=0.219 Sum_probs=175.3
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|+.++|.|+.. .|++++.|++|++|+++... ...
T Consensus 295 d~ir~l~~~~sep--~lit~sed~~lk~WnLqk~~--~s~---------------------------------------- 330 (577)
T KOG0642|consen 295 DCIRALAFHPSEP--VLITASEDGTLKLWNLQKAK--KSA---------------------------------------- 330 (577)
T ss_pred hhhhhhhcCCCCC--eEEEeccccchhhhhhcccC--Ccc----------------------------------------
Confidence 8899999987755 89999999999999994311 000
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
......+|. +.+|.++|.|+++.++++.+.+| -||+|+.|++....-....
T Consensus 331 ----------~~~~epi~t------------------fraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds 382 (577)
T KOG0642|consen 331 ----------EKDVEPILT------------------FRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDS 382 (577)
T ss_pred ----------ccceeeeEE------------------EecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccc
Confidence 000112222 47999999999999999999998 7999999976533222211
Q ss_pred ecc--cCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 272 VDV--KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 272 ~~~--~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
.+. -...+.+|.+.++.+++++.. ..|++++.||++++|+......+ +|..+... +.-.++.
T Consensus 383 ~dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~~-----~f~~~~e~----------g~Plsvd 446 (577)
T KOG0642|consen 383 YDPSVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESPC-----TFGEPKEH----------GYPLSVD 446 (577)
T ss_pred cCcchhccceeccccceeeeeecccc-cceeeecCCceEEeeccCCcCcc-----ccCCcccc----------CCcceEe
Confidence 110 013678999999999999987 88999999999999998765431 12221110 2233444
Q ss_pred EccCCCEEEEEcC--CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 350 FARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 350 ~s~~~~~l~s~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
+-.....+...+. +.--++++.. ...+..+........ .....+..+.++|.+.+.+++..|+.|+++|
T Consensus 447 ~~ss~~a~~~~s~~~~~~~~~~~ev-~s~~~~~~s~~~~~~--------~~~~~in~vVs~~~~~~~~~~hed~~Ir~~d 517 (577)
T KOG0642|consen 447 RTSSRPAHSLASFRFGYTSIDDMEV-VSDLLIFESSASPGP--------RRYPQINKVVSHPTADITFTAHEDRSIRFFD 517 (577)
T ss_pred eccchhHhhhhhcccccccchhhhh-hhheeeccccCCCcc--------cccCccceEEecCCCCeeEecccCCceeccc
Confidence 4322211222221 3333444443 222222222111100 0011234788999999999999999999999
Q ss_pred cCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 428 CSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
..++ .++.....|...++++++.|+|.+|++++.|+.+++
T Consensus 518 n~~~-~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l 557 (577)
T KOG0642|consen 518 NKTG-KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRL 557 (577)
T ss_pred cccc-ccchheeeccceecceeecCCCceEEeecCCceeeh
Confidence 9988 566888999999999999999999999999999999
No 185
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.79 E-value=9e-19 Score=163.63 Aligned_cols=277 Identities=15% Similarity=0.218 Sum_probs=206.5
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
...+|...|.|+.|...|.++++|+.|..|+||...++. +++...||+
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~-----------------------~lAs~rGhs--------- 232 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR-----------------------CLASCRGHS--------- 232 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchh-----------------------hhccCCCCc---------
Confidence 356899999999999999999999999999999988776 457889998
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
+.|+.++. +.+..+++++++|..|++|.+..+....+
T Consensus 233 ---~ditdlav--s~~n~~iaaaS~D~vIrvWrl~~~~pvsv-------------------------------------- 269 (1113)
T KOG0644|consen 233 ---GDITDLAV--SSNNTMIAAASNDKVIRVWRLPDGAPVSV-------------------------------------- 269 (1113)
T ss_pred ---cccchhcc--chhhhhhhhcccCceEEEEecCCCchHHH--------------------------------------
Confidence 88999998 45566889999999999999887652211
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCccc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSF 269 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~ 269 (515)
+.+|.+.|++++|+|-. .+++||++++||.+-.-
T Consensus 270 ----------------------------------------LrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~--- 303 (1113)
T KOG0644|consen 270 ----------------------------------------LRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEP--- 303 (1113)
T ss_pred ----------------------------------------HhccccceeeeccCccc---cCCCCCceEeccccccc---
Confidence 46899999999999976 34589999999988111
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
.+...+|..+. ...-+.++.|..++ .-+++|+.|+.-+.|.+..... +...+.-+.
T Consensus 304 ~~y~prp~~~~-~~~~~~s~~~~~~~-~~f~Tgs~d~ea~n~e~~~l~~----------------------~~~~lif~t 359 (1113)
T KOG0644|consen 304 RIYVPRPLKFT-EKDLVDSILFENNG-DRFLTGSRDGEARNHEFEQLAW----------------------RSNLLIFVT 359 (1113)
T ss_pred cccCCCCCCcc-cccceeeeeccccc-cccccccCCcccccchhhHhhh----------------------hccceEEEe
Confidence 11111222222 23556778888887 7899999999999888754321 111122222
Q ss_pred EccCC-CEEEEE-cCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCE-EEEecCCCcEEEE
Q 010206 350 FARNG-RHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR-VATGSYSNLFRVF 426 (515)
Q Consensus 350 ~s~~~-~~l~s~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~s~dg~i~iw 426 (515)
++.+- .+.+++ .+-.+++|++.. +.....+.+|... ++.+.++|-... ..+++.||...||
T Consensus 360 ~ssd~~~~~~~ar~~~~~~vwnl~~-g~l~H~l~ghsd~---------------~yvLd~Hpfn~ri~msag~dgst~iw 423 (1113)
T KOG0644|consen 360 RSSDLSSIVVTARNDHRLCVWNLYT-GQLLHNLMGHSDE---------------VYVLDVHPFNPRIAMSAGYDGSTIIW 423 (1113)
T ss_pred ccccccccceeeeeeeEeeeeeccc-chhhhhhcccccc---------------eeeeeecCCCcHhhhhccCCCceEee
Confidence 22222 233333 457899999986 8888888888766 347889995554 5589999999999
Q ss_pred ecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 427 GCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
|+-.+.+......+|. .+..-.|+++|..++....-|.+.+
T Consensus 424 di~eg~pik~y~~gh~-kl~d~kFSqdgts~~lsd~hgql~i 464 (1113)
T KOG0644|consen 424 DIWEGIPIKHYFIGHG-KLVDGKFSQDGTSIALSDDHGQLYI 464 (1113)
T ss_pred ecccCCcceeeecccc-eeeccccCCCCceEecCCCCCceEE
Confidence 9998876665556654 4446789999999988888888888
No 186
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.79 E-value=7.5e-17 Score=135.13 Aligned_cols=354 Identities=15% Similarity=0.163 Sum_probs=213.6
Q ss_pred EEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEE
Q 010206 40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (515)
Q Consensus 40 ~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~ 119 (515)
-++|||+|+++|+.+.- ++.|-|..+-+.. ..|.. -..|.-|.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~-----------------------qlf~c-------------ldki~yie 55 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLH-----------------------QLFLC-------------LDKIVYIE 55 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHH-----------------------HHHHH-------------HHHhhhee
Confidence 47899999999999765 7888887655432 11111 15688889
Q ss_pred EeecCCCcEEEee-eCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCC
Q 010206 120 WCQSANSALYLLS-TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS 198 (515)
Q Consensus 120 ~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 198 (515)
|. .+..+++.+ ..|+.|.+|++...+........ ...+. +..|||||+.+ +
T Consensus 56 W~--ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg--------~agls-------~~~WSPdgrhi-----------L 107 (447)
T KOG4497|consen 56 WK--ADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG--------QAGLS-------SISWSPDGRHI-----------L 107 (447)
T ss_pred ee--ccceeeeeeeeccceEEEEEeecceeEEEeccC--------CCcce-------eeeECCCcceE-----------e
Confidence 94 555555554 67889999999887654443322 12222 78999999765 2
Q ss_pred CCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccC
Q 010206 199 FPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKP 276 (515)
Q Consensus 199 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~ 276 (515)
.+...+-.|.+|. +.+..... +.-....+..++|+|||++.+.+ .|.. ....+..-+ ...++
T Consensus 108 ~tseF~lriTVWS--L~t~~~~~--------~~~pK~~~kg~~f~~dg~f~ai~sRrDCk-dyv~i~~c~-~W~ll---- 171 (447)
T KOG4497|consen 108 LTSEFDLRITVWS--LNTQKGYL--------LPHPKTNVKGYAFHPDGQFCAILSRRDCK-DYVQISSCK-AWILL---- 171 (447)
T ss_pred eeecceeEEEEEE--eccceeEE--------ecccccCceeEEECCCCceeeeeecccHH-HHHHHHhhH-HHHHH----
Confidence 5566777999998 44433311 22233456889999999998876 2321 011111000 00000
Q ss_pred ccccccCCceEEEEEecCCCcEEEEEec--CCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCC
Q 010206 277 ANMEDLTEVITSAEFHPTHCNMLAYSSS--KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 354 (515)
Q Consensus 277 ~~~~~~~~~i~~i~~~p~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 354 (515)
..+.-.+-..+.+.|+||| +.|++=.. +-.|..|.-. -.+..++|+|.+
T Consensus 172 ~~f~~dT~DltgieWsPdg-~~laVwd~~Leykv~aYe~~----------------------------lG~k~v~wsP~~ 222 (447)
T KOG4497|consen 172 KEFKLDTIDLTGIEWSPDG-NWLAVWDNVLEYKVYAYERG----------------------------LGLKFVEWSPCN 222 (447)
T ss_pred HhcCCCcccccCceECCCC-cEEEEecchhhheeeeeeec----------------------------cceeEEEecccc
Confidence 0222234456788999998 66664322 2222222211 247889999999
Q ss_pred CEEEEEcC-CeEEEEEeeCCCCCeee------------------------------------Eeeecccccccccccc--
Q 010206 355 RHILSRDY-MTLKLWDINMDSGPVAT------------------------------------FQVHEHLRPKLCDLYE-- 395 (515)
Q Consensus 355 ~~l~s~~~-~~i~iwd~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~-- 395 (515)
++|+.|+. +.+++.+--+ -++... +..|... .....|+
T Consensus 223 qflavGsyD~~lrvlnh~t-Wk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~--~se~~YE~~ 299 (447)
T KOG4497|consen 223 QFLAVGSYDQMLRVLNHFT-WKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWE--ESETIYEQQ 299 (447)
T ss_pred ceEEeeccchhhhhhceee-eeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccc--cchhhhhhh
Confidence 99999975 8888765321 000000 0000000 0000010
Q ss_pred ---------------CCCccceeeEEEcCCCCEEEEecC--CCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeE
Q 010206 396 ---------------NDSIFDKFECCLSGDGGRVATGSY--SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP 458 (515)
Q Consensus 396 ---------------~~~~~~v~~~~~s~~~~~l~s~s~--dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 458 (515)
.++..++--++|++|..|++|-.+ -+.+.+||++.. .+...-....+|++..|.|..+.|+
T Consensus 300 ~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l--~l~avLiQk~piraf~WdP~~prL~ 377 (447)
T KOG4497|consen 300 MTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL--KLHAVLIQKHPIRAFEWDPGRPRLV 377 (447)
T ss_pred hcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh--hhhhhhhhccceeEEEeCCCCceEE
Confidence 011123456899999999998653 468999999854 3344555678999999999999988
Q ss_pred eecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcEEE
Q 010206 459 LGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYM 512 (515)
Q Consensus 459 s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~i 512 (515)
.+.....+.+ |.+.+. +.+......-.|..+.|+.+|..|+..+.|...+
T Consensus 378 vctg~srLY~---W~psg~-~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDafc~ 427 (447)
T KOG4497|consen 378 VCTGKSRLYF---WAPSGP-RVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAFCV 427 (447)
T ss_pred EEcCCceEEE---EcCCCc-eEEecCCCCceeeeEEecCCCcEEEEEcCCceEE
Confidence 8876666666 333321 1111122246799999999999999888776543
No 187
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.78 E-value=3.2e-17 Score=149.78 Aligned_cols=230 Identities=12% Similarity=0.142 Sum_probs=167.9
Q ss_pred eccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010206 230 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 308 (515)
Q Consensus 230 ~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i 308 (515)
+++|...|.|++|+.||+.+++| .|..|.+|...-.... -..|.+.|.|+.|+|-. +.|++++-. ..
T Consensus 49 LKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L----------kYSH~D~IQCMsFNP~~-h~LasCsLs-dF 116 (1081)
T KOG1538|consen 49 LKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL----------KYSHNDAIQCMSFNPIT-HQLASCSLS-DF 116 (1081)
T ss_pred cccccceEEEEEEccCCceeccCCCceeEEEeccccccee----------eeccCCeeeEeecCchH-HHhhhcchh-hc
Confidence 57899999999999999999999 8999999987643322 14599999999999987 788887765 46
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccc
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLR 387 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~ 387 (515)
-+|......... ......+.+++|..||++++.|-. |+|.+=+-. +++...+..+.+..
T Consensus 117 glWS~~qK~V~K------------------~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~--gEek~~I~Rpgg~N 176 (1081)
T KOG1538|consen 117 GLWSPEQKSVSK------------------HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN--GEEKVKIERPGGSN 176 (1081)
T ss_pred cccChhhhhHHh------------------hhhheeEEEeeecCCCcEEEEeccCceEEeecCC--CCcceEEeCCCCCC
Confidence 788876543211 011246889999999999999965 999987654 44444444333221
Q ss_pred ccccccccCCCccceeeEEEcCCC-----CEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecC
Q 010206 388 PKLCDLYENDSIFDKFECCLSGDG-----GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL 462 (515)
Q Consensus 388 ~~~~~~~~~~~~~~v~~~~~s~~~-----~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 462 (515)
..|++++|+|.. ..++......++.+|.+.. +.+..-+.-.-...++.+.++|.+++.|+.
T Consensus 177 ------------spiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG--~~Igk~r~L~FdP~CisYf~NGEy~LiGGs 242 (1081)
T KOG1538|consen 177 ------------SPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG--KQIGKDRALNFDPCCISYFTNGEYILLGGS 242 (1081)
T ss_pred ------------CCceEEEecCCCCCCccceEEEEeccceeEEEEecc--eeecccccCCCCchhheeccCCcEEEEccC
Confidence 126799999964 4688888888999998873 232222222334458889999999999999
Q ss_pred CCeEEE--ecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcEE
Q 010206 463 SGVVRR--VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLY 511 (515)
Q Consensus 463 d~~v~l--~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~ 511 (515)
|+.+.+ .+|-.+ ++.-.+...|..++..|+++++++|+.||.+
T Consensus 243 dk~L~~fTR~GvrL------GTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTi 287 (1081)
T KOG1538|consen 243 DKQLSLFTRDGVRL------GTVGEQDSWIWTVQAKPNSQYVVVGCQDGTI 287 (1081)
T ss_pred CCceEEEeecCeEE------eeccccceeEEEEEEccCCceEEEEEccCee
Confidence 999998 222211 2223357789999999999999999988743
No 188
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.78 E-value=1.2e-15 Score=141.01 Aligned_cols=280 Identities=15% Similarity=0.132 Sum_probs=168.9
Q ss_pred EEeeeCCCeEEEEEccC-CeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCC-CCccc
Q 010206 129 YLLSTNDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPP-GGVSS 206 (515)
Q Consensus 129 l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~-~~~~~ 206 (515)
+++...++.|.+|++.+ +++......... +. +..++++|+++.| +.+ ..++.
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~-------~~-------~~~l~~spd~~~l------------yv~~~~~~~ 58 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDVP-------GQ-------VQPMVISPDKRHL------------YVGVRPEFR 58 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEecC-------CC-------CccEEECCCCCEE------------EEEECCCCc
Confidence 34447789999999964 443322222110 11 1178899999987 443 45688
Q ss_pred EEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCC
Q 010206 207 LRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTE 284 (515)
Q Consensus 207 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 284 (515)
|.+|+ +.. .+.. ..... .........++++|++++|+++ .++.|.+|++++......... .+. +..
T Consensus 59 i~~~~--~~~-~g~l--~~~~~--~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~----~~~-~~~ 126 (330)
T PRK11028 59 VLSYR--IAD-DGAL--TFAAE--SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQ----IIE-GLE 126 (330)
T ss_pred EEEEE--ECC-CCce--EEeee--ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCcee----ecc-CCC
Confidence 88898 431 1111 11111 1122356789999999998887 599999999974332211110 111 234
Q ss_pred ceEEEEEecCCCcEE-EEEecCCeEEEEecCcccccccc-cceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC
Q 010206 285 VITSAEFHPTHCNML-AYSSSKGSIRLIDMRQSALCDTH-SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY 362 (515)
Q Consensus 285 ~i~~i~~~p~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~ 362 (515)
...+++++|++ +++ ++...++.|.+||+.+...+... ....... . ......+.|+|+|+++++.+.
T Consensus 127 ~~~~~~~~p~g-~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~---------~--g~~p~~~~~~pdg~~lyv~~~ 194 (330)
T PRK11028 127 GCHSANIDPDN-RTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV---------E--GAGPRHMVFHPNQQYAYCVNE 194 (330)
T ss_pred cccEeEeCCCC-CEEEEeeCCCCEEEEEEECCCCcccccCCCceecC---------C--CCCCceEEECCCCCEEEEEec
Confidence 46788999998 555 55556799999999763322110 0000100 0 123567899999999988753
Q ss_pred --CeEEEEEeeCCCCC---eeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEec-CCCcEEEEecCCCCccee
Q 010206 363 --MTLKLWDINMDSGP---VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAEST 436 (515)
Q Consensus 363 --~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s-~dg~i~iw~~~~~~~~~~ 436 (515)
+.|.+|++...... +..+....... ... .....+.++|++++|+++. .++.|.+|++...+...
T Consensus 195 ~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~-------~~~--~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~- 264 (330)
T PRK11028 195 LNSSVDVWQLKDPHGEIECVQTLDMMPADF-------SDT--RWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVL- 264 (330)
T ss_pred CCCEEEEEEEeCCCCCEEEEEEEecCCCcC-------CCC--ccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeE-
Confidence 99999999742122 22221111000 000 0012588999999998875 47899999996543221
Q ss_pred eeccC---CCceeeEEECCCCCeeEeecC-CCeEEE
Q 010206 437 TLEAS---KNPMRRQVQTPSRPSRPLGSL-SGVVRR 468 (515)
Q Consensus 437 ~~~~~---~~~v~~~~~~~~~~~l~s~~~-d~~v~l 468 (515)
++..+ ......+.++|++++|++++. +++|.+
T Consensus 265 ~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v 300 (330)
T PRK11028 265 SFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISV 300 (330)
T ss_pred EEeEEEeccccCCceEECCCCCEEEEEEccCCcEEE
Confidence 22222 124568899999999987765 888888
No 189
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=5.1e-16 Score=146.78 Aligned_cols=304 Identities=17% Similarity=0.261 Sum_probs=205.8
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
...|+-.++|.++||+++++|+|..||+|.+|.--.... +---.+.++.|.
T Consensus 201 ~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-------------------~~~t~t~lHWH~---------- 251 (792)
T KOG1963|consen 201 TVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-------------------DSETCTLLHWHH---------- 251 (792)
T ss_pred hhhhcccceeEEeccccceEEEeccCCcEEEEecccccc-------------------ccccceEEEecc----------
Confidence 467888899999999999999999999999998543110 001224577887
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|+++.| +.+|.+|++|+.++.+-+|.+.+++...
T Consensus 252 --~~V~~L~f--S~~G~~LlSGG~E~VLv~Wq~~T~~kqf---------------------------------------- 287 (792)
T KOG1963|consen 252 --DEVNSLSF--SSDGAYLLSGGREGVLVLWQLETGKKQF---------------------------------------- 287 (792)
T ss_pred --cccceeEE--ecCCceEeecccceEEEEEeecCCCccc----------------------------------------
Confidence 77999999 5678899999999999999999876222
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
+..-...|..+.++||+.+.+.. .|..|.+....+.....
T Consensus 288 ---------------------------------------LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~ 328 (792)
T KOG1963|consen 288 ---------------------------------------LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKS 328 (792)
T ss_pred ---------------------------------------ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhh
Confidence 12223678899999999999887 89999999876555444
Q ss_pred ceecccCc---cccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccccee
Q 010206 270 NIVDVKPA---NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 346 (515)
Q Consensus 270 ~~~~~~~~---~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 346 (515)
.+..+.+. .-....+-.+.++++|.- +.++..+..|.|.+||+.+...+.+ ....+.+..... ..+.-.++
T Consensus 329 tIsgi~~~~~~~k~~~~~l~t~~~idpr~-~~~vln~~~g~vQ~ydl~td~~i~~-~~v~~~n~~~~~----~n~~v~it 402 (792)
T KOG1963|consen 329 TISGIKPPTPSTKTRPQSLTTGVSIDPRT-NSLVLNGHPGHVQFYDLYTDSTIYK-LQVCDENYSDGD----VNIQVGIT 402 (792)
T ss_pred hccCccCCCccccccccccceeEEEcCCC-CceeecCCCceEEEEeccccceeee-EEEEeecccCCc----ceeEEeee
Confidence 33333221 111234556788899954 6888899999999999988765422 222222222111 13445788
Q ss_pred EEEEccCCCEEEEEc---------C--CeEEEEEeeCCCCCeeeEe-----eeccccccccccccCCCccceeeEEEcCC
Q 010206 347 DIKFARNGRHILSRD---------Y--MTLKLWDINMDSGPVATFQ-----VHEHLRPKLCDLYENDSIFDKFECCLSGD 410 (515)
Q Consensus 347 ~~~~s~~~~~l~s~~---------~--~~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 410 (515)
+++.+..|.++++.. + -.+++|-... ...-..+. .|+.. . +..+..++.
T Consensus 403 av~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~-~~kt~~L~T~I~~PH~~~------------~--vat~~~~~~ 467 (792)
T KOG1963|consen 403 AVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNP-NSKTFILNTKINNPHGNA------------F--VATIFLNPT 467 (792)
T ss_pred eehhhccceEEEEeeeeehhhhccCceEEEEEEEEcC-CcceeEEEEEEecCCCce------------e--EEEEEecCc
Confidence 888888899999842 1 3578888764 22211211 12111 0 112233333
Q ss_pred CC-EEEEecCCCcEEEEecCCCCcce---------eeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 411 GG-RVATGSYSNLFRVFGCSEGSAES---------TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 411 ~~-~l~s~s~dg~i~iw~~~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.. ..++++.||.++||-+...+... ..-..|..++++.+|+.||..| +.+.|++|.+
T Consensus 468 rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGsll-a~s~~~~Iti 534 (792)
T KOG1963|consen 468 RSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLL-AVSFDDTITI 534 (792)
T ss_pred ccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEE-EEecCCEEEE
Confidence 33 78999999999999984432211 1112478999999999999555 5567888888
No 190
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.2e-17 Score=146.93 Aligned_cols=304 Identities=14% Similarity=0.191 Sum_probs=216.9
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
.-.|.+.|..|.|+..|..|++|+.|..|.+||+..+... +.-..+|.
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~----------------------l~f~SGH~---------- 185 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK----------------------LSFESGHC---------- 185 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCcc----------------------cccccccc----------
Confidence 4579999999999999999999999999999999877642 11234666
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|..-.|.|..+...+++++.||.+++=.+....
T Consensus 186 --~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~------------------------------------------- 220 (559)
T KOG1334|consen 186 --NNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETG------------------------------------------- 220 (559)
T ss_pred --cchhhhhccCCCCCcCceeccccCceeeeeecccc-------------------------------------------
Confidence 66888889998888899999999999876544321
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCC-EEEEe-CCCcEEEEeCCCCCcc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
...++.+ +..|.+.|.-++.-|+.. .|.++ .|+.+.-+|++.....
T Consensus 221 -----------~~e~t~r---------------------l~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa 268 (559)
T KOG1334|consen 221 -----------YVENTKR---------------------LAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPA 268 (559)
T ss_pred -----------ceeccee---------------------cccccCccceeeecCCCCCcccccccccceeeeeeccCCcc
Confidence 1111111 357888899999888644 45555 8999999999876544
Q ss_pred cceecccCccccccCC---ceEEEEEecCCCcEEEEEecCCeEEEEecCcccccc--cccceeeeccCCCcccccccccc
Q 010206 269 FNIVDVKPANMEDLTE---VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD--THSKLFEEQEAPGTRSFFTEIIA 343 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~---~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 343 (515)
..+. .-+.+.. ..+.++..|...+.+++|+.|-.+++||.+.-..-. ..+..+..+. ....-.-
T Consensus 269 ~~~~-----cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~h------l~~d~~v 337 (559)
T KOG1334|consen 269 EKFV-----CREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHH------LVEDDPV 337 (559)
T ss_pred ceee-----eeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCcc------ccccCcc
Confidence 3322 1112222 567899999887799999999999999988643211 0111121111 1112224
Q ss_pred ceeEEEEccC-CCEEEEEcCCeEEEEEeeCC-C----------CCee-eEeeeccccccccccccCCCccceeeE-EEcC
Q 010206 344 SISDIKFARN-GRHILSRDYMTLKLWDINMD-S----------GPVA-TFQVHEHLRPKLCDLYENDSIFDKFEC-CLSG 409 (515)
Q Consensus 344 ~i~~~~~s~~-~~~l~s~~~~~i~iwd~~~~-~----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~ 409 (515)
.|++++|+.+ +.+|++-.|-.|+++.-... + ..++ .+++|..... + -.+ -|.|
T Consensus 338 ~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~T----------V---KgVNFfGP 404 (559)
T KOG1334|consen 338 NITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRT----------V---KGVNFFGP 404 (559)
T ss_pred cceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccc----------c---ceeeeccC
Confidence 6999999965 45666666778888854431 1 1122 2566654321 1 133 3678
Q ss_pred CCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 410 DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 410 ~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
...|+++||.=|.|.||+-+++ +++..+++...-|+++.-+|--+.||+++-|.-|+|
T Consensus 405 rsEyVvSGSDCGhIFiW~K~t~-eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKI 462 (559)
T KOG1334|consen 405 RSEYVVSGSDCGHIFIWDKKTG-EIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKI 462 (559)
T ss_pred ccceEEecCccceEEEEecchh-HHHHHhhcccceEeccCCCCCCchhhccCCccceee
Confidence 8999999999999999999877 676888888889999999999999999999999999
No 191
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.76 E-value=6.8e-16 Score=145.59 Aligned_cols=260 Identities=13% Similarity=0.170 Sum_probs=177.6
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|.++.|+|... .+++.|+.+|+|.+||++.+........
T Consensus 243 s~v~~~~f~p~~p-~ll~gG~y~GqV~lWD~~~~~~~~~s~l-------------------------------------- 283 (555)
T KOG1587|consen 243 SEVTCLKFCPFDP-NLLAGGCYNGQVVLWDLRKGSDTPPSGL-------------------------------------- 283 (555)
T ss_pred CceeEEEeccCCc-ceEEeeccCceEEEEEccCCCCCCCccc--------------------------------------
Confidence 6799999998654 5888899999999999987652210000
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCC--CEEEEe-CCCcEEEEeCCCCCccc
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--ETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
......|..++..+.|..+. .-|+++ .||.|..|+++.-....
T Consensus 284 ----------------------------------s~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~ 329 (555)
T KOG1587|consen 284 ----------------------------------SALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPV 329 (555)
T ss_pred ----------------------------------ccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccch
Confidence 00024677888888886543 337776 89999999887554433
Q ss_pred ceecccCcc----ccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccce
Q 010206 270 NIVDVKPAN----MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 345 (515)
Q Consensus 270 ~~~~~~~~~----~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 345 (515)
......+.. -......+++++|.+..++.|+.|+.+|.|.--+....+... ...++. ...+..|.++|
T Consensus 330 e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~--~~~~~~------~~~~~~h~g~v 401 (555)
T KOG1587|consen 330 EGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAP--EVSYKG------HSTFITHIGPV 401 (555)
T ss_pred hhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccc--cccccc------cccccccCcce
Confidence 222111100 012245689999999988999999999998763332221111 011121 22356788999
Q ss_pred eEEEEccCCC-EEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCC-EEEEecCCCcE
Q 010206 346 SDIKFARNGR-HILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSNLF 423 (515)
Q Consensus 346 ~~~~~s~~~~-~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~s~dg~i 423 (515)
+++.++|-+. .+.+++|-+++||.......++..+..+... +++++|||... .++++..||.|
T Consensus 402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~---------------v~~vaWSptrpavF~~~d~~G~l 466 (555)
T KOG1587|consen 402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDY---------------VTDVAWSPTRPAVFATVDGDGNL 466 (555)
T ss_pred EeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccce---------------eeeeEEcCcCceEEEEEcCCCce
Confidence 9999999554 4445567899999987335666665544432 56999999875 56678889999
Q ss_pred EEEecCCCCcc-eeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 424 RVFGCSEGSAE-STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 424 ~iw~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.+||+...... ..+.+.+....+.+.+++.|+.|+.|+..|.+.+
T Consensus 467 ~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~ 512 (555)
T KOG1587|consen 467 DIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHI 512 (555)
T ss_pred ehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEE
Confidence 99999754322 2444455666778888999999999999999998
No 192
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.76 E-value=6.2e-17 Score=138.82 Aligned_cols=227 Identities=13% Similarity=0.214 Sum_probs=162.4
Q ss_pred cccccccceEEEEECC-CCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccc
Q 010206 30 EEVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~-~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (515)
.-.+|+++|..++|+| +...||+|+.|.+|.||++..+... .+-......+.+|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~----------------~~ltepvv~L~gH~-------- 131 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT----------------RDLTEPVVELYGHQ-------- 131 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccc----------------cCcccceEEEeecc--------
Confidence 3468999999999999 6678999999999999999776543 11223456788898
Q ss_pred ccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccc
Q 010206 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (515)
Q Consensus 109 ~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~ 188 (515)
.+|..++|+|... +.|++++.|.+|.+|++.+++......+ .+-++ ++.|+.||..+
T Consensus 132 ----rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~l~h---------pd~i~-------S~sfn~dGs~l-- 188 (472)
T KOG0303|consen 132 ----RRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALITLDH---------PDMVY-------SMSFNRDGSLL-- 188 (472)
T ss_pred ----eeEEEEeecccch-hhHhhccCCceEEEEeccCCceeeecCC---------CCeEE-------EEEeccCCcee--
Confidence 8999999999766 5899999999999999999986555442 23344 89999999999
Q ss_pred ccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcC-CeEEEEecCCCCEEEEe----CCCcEEEEeCC
Q 010206 189 NFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDY-HINSISNNSDGETFISA----DDLRINLWNLE 263 (515)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~----~d~~i~iwd~~ 263 (515)
++++.|..|++|| ....+. ...- .+|.+ .-.-+.|-.++..+.+| ++..+.+||..
T Consensus 189 ----------~TtckDKkvRv~d--pr~~~~------v~e~-~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~ 249 (472)
T KOG0303|consen 189 ----------CTTCKDKKVRVID--PRRGTV------VSEG-VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPN 249 (472)
T ss_pred ----------eeecccceeEEEc--CCCCcE------eeec-ccccCCCcceeEEeccCceeeeccccccccceeccCcc
Confidence 9999999999999 333222 1111 24433 23345577888877777 38999999988
Q ss_pred CCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeee
Q 010206 264 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 328 (515)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 328 (515)
..+....+. .+.. ...|.---|.|+..-+.++|-.|+.||.|.+.+......++.+|..
T Consensus 250 nl~eP~~~~-----elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S 308 (472)
T KOG0303|consen 250 NLEEPIALQ-----ELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSS 308 (472)
T ss_pred cccCcceeE-----Eecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccccc
Confidence 766554332 2222 3345545567877334445556999999999877644444444443
No 193
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=5.1e-15 Score=126.30 Aligned_cols=158 Identities=11% Similarity=0.180 Sum_probs=119.1
Q ss_pred CCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEe--cCCeEEEE
Q 010206 235 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--SKGSIRLI 311 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~--~dg~i~~w 311 (515)
..|.++.++. +.|+++ .+. |+|||+++.+....+. ....+...+.++.+++.+ .+++.-+ ..|.|.+|
T Consensus 88 t~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~-----t~~~n~~gl~AlS~n~~n-~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 88 TSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIE-----TTPPNPKGLCALSPNNAN-CYLAYPGSTTSGDVVLF 158 (391)
T ss_pred CceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhh-----ccCCCccceEeeccCCCC-ceEEecCCCCCceEEEE
Confidence 5677777754 456776 433 9999999887665443 222345556677777666 5777543 36899999
Q ss_pred ecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-C-eEEEEEeeCCCCCeeeEeeecccccc
Q 010206 312 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-M-TLKLWDINMDSGPVATFQVHEHLRPK 389 (515)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~-~i~iwd~~~~~~~~~~~~~~~~~~~~ 389 (515)
|..+.+.. ..+..|.+++.+++|+++|.+||++++ | .|||+.+.. ++.+..|+.......
T Consensus 159 d~~nl~~v----------------~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~-G~kl~eFRRG~~~~~- 220 (391)
T KOG2110|consen 159 DTINLQPV----------------NTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-GQKLYEFRRGTYPVS- 220 (391)
T ss_pred Ecccceee----------------eEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC-ccEeeeeeCCceeeE-
Confidence 99876542 236778899999999999999999998 5 579999986 888888764433221
Q ss_pred ccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCC
Q 010206 390 LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 390 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
|.+++|+||+++|++.|+.++|++|.++..
T Consensus 221 ------------IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 221 ------------IYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred ------------EEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 559999999999999999999999999854
No 194
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=6e-17 Score=144.72 Aligned_cols=241 Identities=19% Similarity=0.235 Sum_probs=158.5
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
+..+|++.|+|++|+.||.+|++|+.|-++.|||....+. ....-.+|.
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl----------------------lhsI~TgHt--------- 93 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL----------------------LHSISTGHT--------- 93 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcce----------------------eeeeecccc---------
Confidence 4579999999999999999999999999999999764432 112235677
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..|.++.|.|..++..+++|+.|..|+++|+...+-......
T Consensus 94 ---aNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~----------------------------------- 135 (758)
T KOG1310|consen 94 ---ANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHG----------------------------------- 135 (758)
T ss_pred ---cceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccC-----------------------------------
Confidence 889999999999999999999999999999986431111000
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCC-CEEEEe-CCCcEEEEeCCCCCc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
..-++++ ...|...|..++..|++ +.+-++ .||+|+.+|++....
T Consensus 136 -------------~~~~~~~--------------------~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~ 182 (758)
T KOG1310|consen 136 -------------MEETTRC--------------------WSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHV 182 (758)
T ss_pred -------------ccchhhh--------------------hhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCcc
Confidence 0001111 14677888889999987 666676 899999999987543
Q ss_pred ccceecc--cCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccce--eeeccCCC-ccccccccc
Q 010206 268 SFNIVDV--KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL--FEEQEAPG-TRSFFTEII 342 (515)
Q Consensus 268 ~~~~~~~--~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~ 342 (515)
+..-.+. ....+...--...++.++|..+.+|+.|+.|-..++||.+..........+ ...+..-. ...+..+|.
T Consensus 183 c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl 262 (758)
T KOG1310|consen 183 CNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL 262 (758)
T ss_pred CCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc
Confidence 3210000 000111122346799999999899999999999999996432111000000 00000000 000111111
Q ss_pred -----------cceeEEEEccCCCEEEEE-cCCeEEEEEeeC
Q 010206 343 -----------ASISDIKFARNGRHILSR-DYMTLKLWDINM 372 (515)
Q Consensus 343 -----------~~i~~~~~s~~~~~l~s~-~~~~i~iwd~~~ 372 (515)
..++-+.|+|+|..|+.. +.-.|+++|+..
T Consensus 263 kn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 263 KNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred cCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecC
Confidence 236778899999877663 335899999975
No 195
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=5.1e-16 Score=134.78 Aligned_cols=193 Identities=15% Similarity=0.120 Sum_probs=135.2
Q ss_pred EEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEE
Q 010206 287 TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLK 366 (515)
Q Consensus 287 ~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~ 366 (515)
..++|+.+| ..+++|+.||++|+|+..+..... ....|...|.++.|+|||++|++-+....+
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~l----------------~e~~~~~eV~DL~FS~dgk~lasig~d~~~ 210 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTIL----------------EEIAHHAEVKDLDFSPDGKFLASIGADSAR 210 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCcchhhh----------------hhHhhcCccccceeCCCCcEEEEecCCceE
Confidence 789999998 899999999999999965544321 135577899999999999999984433899
Q ss_pred EEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCC---C--EEEEecCCCcEEEEecCCCCc----ceee
Q 010206 367 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG---G--RVATGSYSNLFRVFGCSEGSA----ESTT 437 (515)
Q Consensus 367 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~--~l~s~s~dg~i~iw~~~~~~~----~~~~ 437 (515)
||+..+ +..+......+.. . . .-.+.|+.|+ . ..+.-..-+.|+.|++..... +...
T Consensus 211 VW~~~~-g~~~a~~t~~~k~-~----------~--~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~ 276 (398)
T KOG0771|consen 211 VWSVNT-GAALARKTPFSKD-E----------M--FSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRK 276 (398)
T ss_pred EEEecc-CchhhhcCCcccc-h----------h--hhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhh
Confidence 999997 6555544321111 0 0 1267888777 2 333444566777777654332 1122
Q ss_pred eccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEE-EcCCcEEE
Q 010206 438 LEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIAC-AASNSLYM 512 (515)
Q Consensus 438 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~-~~~~~~~i 512 (515)
.-.....+++++++++|++++.|+.||.|-+++..+... .......|...|+.+.|+||.++++. ++++...+
T Consensus 277 ~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~--~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 277 KIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQR--LQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred hhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeee--eEeehhhheeeeeeEEEcCCcCcccccccCCceeE
Confidence 233456799999999999999999999999955554442 11112347889999999999999984 44554444
No 196
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.75 E-value=1.1e-16 Score=130.05 Aligned_cols=291 Identities=11% Similarity=0.064 Sum_probs=177.4
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
+.|+++.| ..+ .+|+++..-|.|++|++++.+.......... ..+. .+...|++.
T Consensus 15 ~~v~s~~f--qa~-~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~-------~~it-------~lq~~p~d~-------- 69 (323)
T KOG0322|consen 15 SSVTSVLF--QAN-ERLMSGLSVGIVKMWVLQTERDLPLIRLFGR-------LFIT-------NLQSIPNDS-------- 69 (323)
T ss_pred chheehhh--ccc-hhhhcccccceEEEEEeecCccchhhhhhcc-------ceee-------ceeecCCcc--------
Confidence 88999999 555 4799999999999999998775554442210 1111 333444433
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC-----C----CEEEEeCC--CcEEEEe
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-----G----ETFISADD--LRINLWN 261 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~----~~l~s~~d--~~i~iwd 261 (515)
+.+-+.|..+.+|++ ... .+...|.-.++++.|.+. + +.++.-.. ..+.+-|
T Consensus 70 -----l~tqgRd~~L~lw~i--a~s----------~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D 132 (323)
T KOG0322|consen 70 -----LDTQGRDPLLILWTI--AYS----------AFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQD 132 (323)
T ss_pred -----hhhcCCCceEEEEEc--cCc----------ceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhc
Confidence 278899999999993 211 112334444455555431 1 12222111 1112222
Q ss_pred CCCCCcccceecccCccccccCCceEEEEEecC-C-CcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccc
Q 010206 262 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPT-H-CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT 339 (515)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~-~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (515)
.- . ..++. +.+....+..+.+.+..+.-+ + .-+++.|..+|.+.+||+.++.........+. -..-..
T Consensus 133 ~g--~-~tqv~-i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~k------v~~~~a 202 (323)
T KOG0322|consen 133 GG--D-TTQVQ-IADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSK------VESPNA 202 (323)
T ss_pred cC--c-cceeE-ccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccc------cccchh
Confidence 11 1 11111 111122234566777664322 2 13567788899999999998743222111111 112245
Q ss_pred ccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEec
Q 010206 340 EIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 418 (515)
Q Consensus 340 ~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s 418 (515)
.|..+|.++.+.+.-..=++|+ +..+..|.+......++.-..+.-.. . +|..+.+-||++.+||++
T Consensus 203 sh~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lkn---------p---Gv~gvrIRpD~KIlATAG 270 (323)
T KOG0322|consen 203 SHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKN---------P---GVSGVRIRPDGKILATAG 270 (323)
T ss_pred hccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecC---------C---CccceEEccCCcEEeecc
Confidence 6889999999987443444444 36888898874211111111010000 0 133788999999999999
Q ss_pred CCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 419 YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 419 ~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.|++||||+.++. ..+..|+.|...+++++|+|+...+|.+|.|+.|.+
T Consensus 271 WD~RiRVyswrtl-~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISL 319 (323)
T KOG0322|consen 271 WDHRIRVYSWRTL-NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISL 319 (323)
T ss_pred cCCcEEEEEeccC-CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEe
Confidence 9999999999988 455899999999999999999999999999999998
No 197
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.75 E-value=1.9e-15 Score=139.69 Aligned_cols=274 Identities=9% Similarity=0.055 Sum_probs=164.2
Q ss_pred CCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccC
Q 010206 199 FPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKP 276 (515)
Q Consensus 199 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~ 276 (515)
++...++.|.+|+ +... +. ....+.. .+......++++|++++|+++ .++.|.+|++...... ....
T Consensus 6 ~~~~~~~~I~~~~--~~~~-g~--l~~~~~~--~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~--- 74 (330)
T PRK11028 6 IASPESQQIHVWN--LNHE-GA--LTLLQVV--DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-TFAA--- 74 (330)
T ss_pred EEcCCCCCEEEEE--ECCC-Cc--eeeeeEE--ecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-EEee---
Confidence 4556789999999 5321 11 1122221 233567789999999998775 5899999999732221 1110
Q ss_pred ccccccCCceEEEEEecCCCcEEEEEe-cCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCC
Q 010206 277 ANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 355 (515)
Q Consensus 277 ~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 355 (515)
.. ........++|+|++ +++++++ .++.|.+|++.......+....+. +......++++|+++
T Consensus 75 -~~-~~~~~p~~i~~~~~g-~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-------------~~~~~~~~~~~p~g~ 138 (330)
T PRK11028 75 -ES-PLPGSPTHISTDHQG-RFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-------------GLEGCHSANIDPDNR 138 (330)
T ss_pred -ee-cCCCCceEEEECCCC-CEEEEEEcCCCeEEEEEECCCCCCCCceeecc-------------CCCcccEeEeCCCCC
Confidence 11 122346789999999 6666655 489999999964322111111111 112356788999999
Q ss_pred EEEEEc-C-CeEEEEEeeCCCCCee----eEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecC-CCcEEEEec
Q 010206 356 HILSRD-Y-MTLKLWDINMDSGPVA----TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNLFRVFGC 428 (515)
Q Consensus 356 ~l~s~~-~-~~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~-dg~i~iw~~ 428 (515)
++++++ . +.|.+||+...+.... ......+. . ...++|+|+|++++++.. +++|.+|++
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~-----------~---p~~~~~~pdg~~lyv~~~~~~~v~v~~~ 204 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGA-----------G---PRHMVFHPNQQYAYCVNELNSSVDVWQL 204 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCC-----------C---CceEEECCCCCEEEEEecCCCEEEEEEE
Confidence 997754 3 9999999975232211 01111110 0 126899999999987775 899999999
Q ss_pred CCC-Ccc--eeeeccC------CCceeeEEECCCCCeeEeecC-CCeEEEecCCCCCc-cccCCccccccCCeeEEEEcC
Q 010206 429 SEG-SAE--STTLEAS------KNPMRRQVQTPSRPSRPLGSL-SGVVRRVKGADNSA-LDANGNAFDFSMKLLHLAWHP 497 (515)
Q Consensus 429 ~~~-~~~--~~~~~~~------~~~v~~~~~~~~~~~l~s~~~-d~~v~l~~~~~~~~-~~~~~~~~~~~~~i~~~~~s~ 497 (515)
+.. +.. ...+... ......+.++|++++++++.. ++.|.+++-..... .++.. ..........++|+|
T Consensus 205 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~-~~~~~~~p~~~~~~~ 283 (330)
T PRK11028 205 KDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEG-HQPTETQPRGFNIDH 283 (330)
T ss_pred eCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeE-EEeccccCCceEECC
Confidence 742 111 2233221 112235889999999888855 67888732111000 00111 111122456899999
Q ss_pred CCCEEEEEc--CCcEEEEe
Q 010206 498 SENSIACAA--SNSLYMYY 514 (515)
Q Consensus 498 ~~~~la~~~--~~~~~i~~ 514 (515)
||++|+++. ++.+.+|.
T Consensus 284 dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 284 SGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred CCCEEEEEEccCCcEEEEE
Confidence 999999876 55688874
No 198
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.74 E-value=8.1e-16 Score=150.12 Aligned_cols=288 Identities=17% Similarity=0.225 Sum_probs=179.9
Q ss_pred cCCccceeeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCC
Q 010206 85 SRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGN 164 (515)
Q Consensus 85 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 164 (515)
.|+|.+..++.++.|. ..|..++-++ +.+.+|++|+.||+|++|+.+.-.....
T Consensus 1033 gW~p~G~lVAhL~Ehs------------~~v~k~a~s~-~~~s~FvsgS~DGtVKvW~~~k~~~~~~------------- 1086 (1431)
T KOG1240|consen 1033 GWNPRGILVAHLHEHS------------SAVIKLAVSS-EHTSLFVSGSDDGTVKVWNLRKLEGEGG------------- 1086 (1431)
T ss_pred CCCccceEeehhhhcc------------ccccceeecC-CCCceEEEecCCceEEEeeehhhhcCcc-------------
Confidence 3677777778788887 7788888863 4557999999999999999875321100
Q ss_pred CCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeeccccc-ccccceeeeeeccCcCCe-EEEEe
Q 010206 165 GPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQET-NLVAGCRRIYAHAHDYHI-NSISN 242 (515)
Q Consensus 165 ~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~v-~~~~~ 242 (515)
...+.+.+++.+........+...+.++.++.||.|++.+ +...+. .....+.+..-....+.+ ..-++
T Consensus 1087 -------s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~--id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~ 1157 (1431)
T KOG1240|consen 1087 -------SARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLR--IDHYNVSKRVATQVRIPNLKKDGVVVSMHAF 1157 (1431)
T ss_pred -------eeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEE--ccccccccceeeeeecccccCCCceEEeecc
Confidence 0001345555555555555555566668889999999988 333111 111111111111122233 33344
Q ss_pred cC-CCC-EEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCccccc
Q 010206 243 NS-DGE-TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC 319 (515)
Q Consensus 243 ~~-~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~ 319 (515)
.. .+. .++.+ .-+.|..||+++......+ ......+.|++++.+|.+ ++++.|+..|.+.+||+|-+..+
T Consensus 1158 ~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l------k~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i 1230 (1431)
T KOG1240|consen 1158 TAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL------KNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPI 1230 (1431)
T ss_pred cccccceeEEEEEeccceEEecchhhhhHHhh------hcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCcee
Confidence 33 233 56666 7899999999876544322 223346789999999998 89999999999999999987654
Q ss_pred ccccceeeeccCCCccccccccccceeEEEEcc---CCCEEEE-Ec-C-CeEEEEEeeCCCCCeeeEeeecccccccccc
Q 010206 320 DTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR---NGRHILS-RD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDL 393 (515)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~s-~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 393 (515)
.. |+ .++..+|+.+..+| .....++ +. . +.|.+|++.+ +....++...... ..+...
T Consensus 1231 ~s----w~-----------~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~-g~~~~vl~~s~~~-p~ls~~ 1293 (1431)
T KOG1240|consen 1231 LS----WE-----------HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET-GLRQTVLWASDGA-PILSYA 1293 (1431)
T ss_pred ec----cc-----------CcccCCcceEEeeccCCCCceEEEecccCCCceeeeeccc-CcceEEEEcCCCC-cchhhh
Confidence 22 22 22336777777776 3345555 44 3 8999999997 5655555544221 111111
Q ss_pred c-cC----CCccceeeEEEcCCCCEEEEecCCCcEEEEecCCC
Q 010206 394 Y-EN----DSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 394 ~-~~----~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
. .+ ........+++..-+.++.+|+.|..|+.||....
T Consensus 1294 ~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1294 LPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred cccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 1 11 11111224455556678999999999999998764
No 199
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.73 E-value=1e-13 Score=134.28 Aligned_cols=321 Identities=21% Similarity=0.325 Sum_probs=209.2
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCe-eEEEeeccCCcccCCCCCCccCCCCcCCCcee-ecCCC-ccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSY-MANGG-CGERN 189 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~g~-~l~~~ 189 (515)
..+..+.+ ...+..++.++.|+.+.+|+...+. .......... ..+. .+.+ .+++. .+
T Consensus 66 ~~i~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-------~~~~~~~~~~~~~--- 126 (466)
T COG2319 66 DSITSIAF--SPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-------SSVS-------KLALSSPDGNSIL--- 126 (466)
T ss_pred ceEEEEEE--CCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-------Ccee-------eEEEECCCcceEE---
Confidence 78999999 4556688888899999999999885 2222222110 0111 2233 55555 22
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-C-CCcEEEEeCCCCCc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-DLRINLWNLEISNQ 267 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~-d~~i~iwd~~~~~~ 267 (515)
......++.+.+|+ ... ..........|...|..++|+|++..++++ . |+.+++|++.....
T Consensus 127 --------~~~~~~d~~~~~~~--~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (466)
T COG2319 127 --------LASSSLDGTVKLWD--LST------PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP 190 (466)
T ss_pred --------eccCCCCccEEEEE--ecC------CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCce
Confidence 13345588999999 332 011222247899999999999999988887 5 99999999986433
Q ss_pred ccceecccCccccccCCceEEEEEecCCCc-EEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccccee
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCN-MLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 346 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 346 (515)
.. .+.+|...+.+++|+|++ . .+++++.|+.|++||...+..... .+.+|....
T Consensus 191 ~~--------~~~~~~~~v~~~~~~~~~-~~~~~~~~~d~~i~~wd~~~~~~~~~---------------~~~~~~~~~- 245 (466)
T COG2319 191 LS--------TLAGHTDPVSSLAFSPDG-GLLIASGSSDGTIRLWDLSTGKLLRS---------------TLSGHSDSV- 245 (466)
T ss_pred EE--------eeccCCCceEEEEEcCCc-ceEEEEecCCCcEEEEECCCCcEEee---------------ecCCCCcce-
Confidence 32 445689999999999998 5 555559999999998875543211 133444443
Q ss_pred EEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEE
Q 010206 347 DIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 425 (515)
Q Consensus 347 ~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~i 425 (515)
...|+|++.++++++. +.+++|++......+..+..|... +.++.|+|++..+++++.|+.+.+
T Consensus 246 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~~~~~~~d~~~~~ 310 (466)
T COG2319 246 VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS---------------VLSVAFSPDGKLLASGSSDGTVRL 310 (466)
T ss_pred eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCcc---------------EEEEEECCCCCEEEEeeCCCcEEE
Confidence 3389999988887654 999999998633323333333222 458899999999888998999999
Q ss_pred EecCCCCcceeee--ccCCCceeeEEECCCCCeeEee-cCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEE
Q 010206 426 FGCSEGSAESTTL--EASKNPMRRQVQTPSRPSRPLG-SLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSI 502 (515)
Q Consensus 426 w~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~-~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 502 (515)
|+..+.... ... ..|...+..+.+.+++..++.+ ..|+.+.+....... ..........+..+.+++ ...+
T Consensus 311 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~ 384 (466)
T COG2319 311 WDLETGKLL-SSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK----PLKTLEGHSNVLSVSFSP-DGRV 384 (466)
T ss_pred EEcCCCceE-EEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc----eeEEecCCceEEEEEECC-CCCE
Confidence 988876433 333 3777788888884332455555 677777762111111 111111122288999999 5333
Q ss_pred EE--EcCCcEEEEe
Q 010206 503 AC--AASNSLYMYY 514 (515)
Q Consensus 503 a~--~~~~~~~i~~ 514 (515)
.. ..+..+.+|.
T Consensus 385 ~~~~~~~~~~~~~~ 398 (466)
T COG2319 385 VSSGSTDGTVRLWD 398 (466)
T ss_pred EEEecCCCceEEEe
Confidence 33 3455577764
No 200
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=1.8e-16 Score=137.58 Aligned_cols=196 Identities=15% Similarity=0.172 Sum_probs=144.8
Q ss_pred EEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcc
Q 010206 238 NSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 316 (515)
Q Consensus 238 ~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~ 316 (515)
..++|+.+|..|+++ .||++|+|+........ ....|...|.++.|+||+ .+|++-+.| ..++|+.+++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l--------~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g 217 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL--------EEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTG 217 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhh--------hhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccC
Confidence 689999999999998 89999999966554432 445688999999999999 899999999 9999999998
Q ss_pred cccccccceeeeccCCCccccccccccceeEEEEccCC---CEEEE--EcC-CeEEEEEeeCCCCCeeeEeeeccccccc
Q 010206 317 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG---RHILS--RDY-MTLKLWDINMDSGPVATFQVHEHLRPKL 390 (515)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~---~~l~s--~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 390 (515)
..+.+.. .++. ...+..+.|+.|+ .+.+. ... +.|+.||+.....- ..+......
T Consensus 218 ~~~a~~t-~~~k-------------~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~~~~---- 278 (398)
T KOG0771|consen 218 AALARKT-PFSK-------------DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLRKKI---- 278 (398)
T ss_pred chhhhcC-Cccc-------------chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccchhhhh----
Confidence 5433211 0111 1346677888766 33322 334 78888887642221 111111100
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 391 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 391 ~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.....|.+++.++||++++.|+.||.|-|++..+-+.....-+.|...|+.+.|+|+.+++++.+.|....+
T Consensus 279 ------~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 279 ------KRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred ------hccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeE
Confidence 001124599999999999999999999999999876666777899999999999999999999888887777
No 201
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.4e-15 Score=128.37 Aligned_cols=243 Identities=14% Similarity=0.157 Sum_probs=152.4
Q ss_pred cCcCCeEEEEecC--CCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccC-CceEEEEEecCCCcEEEEEec---
Q 010206 232 AHDYHINSISNNS--DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT-EVITSAEFHPTHCNMLAYSSS--- 304 (515)
Q Consensus 232 ~~~~~v~~~~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~i~~i~~~p~~~~~l~~~~~--- 304 (515)
++...++.+.|.. ....+.++ .||+|++||++...+...+ ....+. .+..+++.+..+ +++++|..
T Consensus 68 ~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~------~~~~~~~~~f~~ld~nck~-~ii~~GtE~~~ 140 (376)
T KOG1188|consen 68 GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARI------SWTQQSGTPFICLDLNCKK-NIIACGTELTR 140 (376)
T ss_pred CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhe------eccCCCCCcceEeeccCcC-CeEEecccccc
Confidence 3444455555544 45567777 8999999999987665432 334444 456777777666 78888764
Q ss_pred -CCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEcc-CCCEEEEEc-CCeEEEEEeeCCCC---Cee
Q 010206 305 -KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRD-YMTLKLWDINMDSG---PVA 378 (515)
Q Consensus 305 -dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~-~~~i~iwd~~~~~~---~~~ 378 (515)
+-.+.+||+|..+... ......|...|+++.|+| +.++|++|+ ||.|.+||+..+.. ++.
T Consensus 141 s~A~v~lwDvR~~qq~l--------------~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~ 206 (376)
T KOG1188|consen 141 SDASVVLWDVRSEQQLL--------------RQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLH 206 (376)
T ss_pred CceEEEEEEeccccchh--------------hhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHH
Confidence 6679999999876421 122456788999999999 667888887 59999999975311 111
Q ss_pred eEeeeccccccccccccCCCccceeeEEEcCCC-CEEEEecCCCcEEEEecCCCCcceeeeccC------------CCce
Q 010206 379 TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCSEGSAESTTLEAS------------KNPM 445 (515)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~------------~~~v 445 (515)
++ .+. ..|..+.|..++ +.|.+-+...+..+|+++.+.+.. .++.. .+.+
T Consensus 207 vi-N~~---------------sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~-~~~~~~~~~~d~r~~~~~dY~ 269 (376)
T KOG1188|consen 207 VI-NHG---------------SSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEET-WLENPDVSADDLRKEDNCDYV 269 (376)
T ss_pred hh-ccc---------------ceeeeeeeecCCcceEEEEEccCceeEEEccCCChhh-cccCccchhhhHHhhhhhhhe
Confidence 11 111 124588998877 358888899999999999886432 22211 0011
Q ss_pred eeEEECCCCCeeEeecC-CCeEEE---e--cCCCCCccccCCccc-cccCCeeEEEEcCCCCEEEEEcCCc-EEEEe
Q 010206 446 RRQVQTPSRPSRPLGSL-SGVVRR---V--KGADNSALDANGNAF-DFSMKLLHLAWHPSENSIACAASNS-LYMYY 514 (515)
Q Consensus 446 ~~~~~~~~~~~l~s~~~-d~~v~l---~--~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~la~~~~~~-~~i~~ 514 (515)
-......++.+.+.++. .++.++ . ...... .....+. +|...|+++.|...+..+.+|+++| +.+|-
T Consensus 270 I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~--~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 270 INEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLL--TEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred eecccCCCcceEEEeccccCceeEEEeeeccccccc--CccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 11111223334444444 555555 1 111111 1111222 4677889999999999999999887 66664
No 202
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=9.6e-16 Score=145.95 Aligned_cols=169 Identities=14% Similarity=0.109 Sum_probs=111.1
Q ss_pred EEEecCCCCEEEEe--CCCcEEEE--eCCCCCcccceecccCccccccCCceEEEEEecCCCcEEE-EEecCCeEEEEec
Q 010206 239 SISNNSDGETFISA--DDLRINLW--NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSKGSIRLIDM 313 (515)
Q Consensus 239 ~~~~~~~~~~l~s~--~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~-~~~~dg~i~~wd~ 313 (515)
.++|+|||+.|+.+ .++.+.|| |+.++.. . .+..+...+....|+||| +.|+ ++..++...+|++
T Consensus 252 ~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~--------~lt~~~~~~~~~~wSpDG-~~i~f~s~~~g~~~I~~~ 321 (429)
T PRK01742 252 APAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-S--------QLTSGAGNNTEPSWSPDG-QSILFTSDRSGSPQVYRM 321 (429)
T ss_pred ceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-E--------eeccCCCCcCCEEECCCC-CEEEEEECCCCCceEEEE
Confidence 57899999988875 47766655 5544331 1 334456667899999999 5555 4456788889987
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeecccccccccc
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDL 393 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 393 (515)
....... ..+ ++.. ....|+|||++|+..+...+.+||+.+ ++.. .+.... .
T Consensus 322 ~~~~~~~---~~l-------------~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~-g~~~-~lt~~~-~------- 373 (429)
T PRK01742 322 SASGGGA---SLV-------------GGRG--YSAQISADGKTLVMINGDNVVKQDLTS-GSTE-VLSSTF-L------- 373 (429)
T ss_pred ECCCCCe---EEe-------------cCCC--CCccCCCCCCEEEEEcCCCEEEEECCC-CCeE-EecCCC-C-------
Confidence 5432110 000 1112 356899999999886654567799875 4332 221111 0
Q ss_pred ccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCC-CCcceeeeccCCCceeeEEECCC
Q 010206 394 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE-GSAESTTLEASKNPMRRQVQTPS 453 (515)
Q Consensus 394 ~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~-~~~~~~~~~~~~~~v~~~~~~~~ 453 (515)
...+.|+|||++|+.++.++...+|++.+ .+.....+..|...+...+|+|-
T Consensus 374 --------~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 374 --------DESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred --------CCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 12678999999999999999888887632 12455677788887888888875
No 203
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1.8e-15 Score=145.58 Aligned_cols=295 Identities=14% Similarity=0.166 Sum_probs=183.4
Q ss_pred eEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCC
Q 010206 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (515)
Q Consensus 115 v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~ 194 (515)
-..+.|+|..+ .++++...-.|++||.+.++...-+.....+ ...|. .+.+. ....
T Consensus 1067 pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~-----~t~Vs-------~l~li----------Ne~D 1122 (1387)
T KOG1517|consen 1067 PKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFP-----DTRVS-------DLELI----------NEQD 1122 (1387)
T ss_pred CceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCC-----CCccc-------eeeee----------cccc
Confidence 45567777655 7888887789999999988764443322111 01111 22222 1122
Q ss_pred CCCCCCCCCcccEEeeeeeeccccccccc----ceeeeeeccCcCCeEEEEecCC-CCEEEEeCCCcEEEEeCCCCCccc
Q 010206 195 NDSSFPPGGVSSLRLPVVVVTSQETNLVA----GCRRIYAHAHDYHINSISNNSD-GETFISADDLRINLWNLEISNQSF 269 (515)
Q Consensus 195 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~d~~i~iwd~~~~~~~~ 269 (515)
..++++++.||.|+||+= +.+....... ......+.+..+.=.-+.|... |.++++|+-..|+|||........
T Consensus 1123 ~aLlLtas~dGvIRIwk~-y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~ 1201 (1387)
T KOG1517|consen 1123 DALLLTASSDGVIRIWKD-YADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVA 1201 (1387)
T ss_pred hhheeeeccCceEEEecc-cccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEe
Confidence 235599999999999981 1111111100 0000001111111133567665 445555688999999998665443
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccc--eeE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS--ISD 347 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~ 347 (515)
.+. .+....|+++.-+-.++++++.|..||.+++||.|....- . .....+.|... |..
T Consensus 1202 diP-------~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d-s------------~v~~~R~h~~~~~Iv~ 1261 (1387)
T KOG1517|consen 1202 DIP-------YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD-S------------LVCVYREHNDVEPIVH 1261 (1387)
T ss_pred ecc-------cCCCccceeecccccCCceEEEeecCCceEEeecccCCcc-c------------cceeecccCCccccee
Confidence 221 2234557777655444489999999999999999875421 1 12224445555 999
Q ss_pred EEEccCCCE-EEEEcC-CeEEEEEeeCC-CCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEE
Q 010206 348 IKFARNGRH-ILSRDY-MTLKLWDINMD-SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 424 (515)
Q Consensus 348 ~~~s~~~~~-l~s~~~-~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~ 424 (515)
+.+.+.|-- |++|+. |.|++||++++ .....+...|-.... ..+++..+++...+|+|+. +.|+
T Consensus 1262 ~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs------------~lTal~VH~hapiiAsGs~-q~ik 1328 (1387)
T KOG1517|consen 1262 LSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGS------------ALTALTVHEHAPIIASGSA-QLIK 1328 (1387)
T ss_pred EEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCc------------cceeeeeccCCCeeeecCc-ceEE
Confidence 999886654 888875 99999999973 222222222221100 1458999999999999998 9999
Q ss_pred EEecCCCCcceeeec-------cCCCceeeEEECCCCCeeEeecCCCeEEEe
Q 010206 425 VFGCSEGSAESTTLE-------ASKNPMRRQVQTPSRPSRPLGSLSGVVRRV 469 (515)
Q Consensus 425 iw~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~ 469 (515)
||++.. ..+..++ .....+.+++|+|-.-.+|.|+.|.+|.++
T Consensus 1329 Iy~~~G--~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1329 IYSLSG--EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred EEecCh--hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEe
Confidence 999973 3333333 223567899999999999999999999994
No 204
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.70 E-value=2.9e-15 Score=123.54 Aligned_cols=211 Identities=9% Similarity=0.183 Sum_probs=154.2
Q ss_pred cccccceEEEEECC-CCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 32 VQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 32 ~~h~~~v~~v~~s~-~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
.++..++++..|+. |-+++.+.+-|-+..|||++++.. +...+.+-+|+
T Consensus 147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~--------------------~~vkTQLIAHD---------- 196 (364)
T KOG0290|consen 147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS--------------------GTVKTQLIAHD---------- 196 (364)
T ss_pred cccCCcccccccccCCcceeEeecccCeEEEEEEeeccc--------------------cceeeEEEecC----------
Confidence 45778999999998 778999999999999999988732 22446678888
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|..|+|.. ...+.|++++.||.+|+||++..+-..+..
T Consensus 197 --KEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIY------------------------------------- 236 (364)
T KOG0290|consen 197 --KEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIY------------------------------------- 236 (364)
T ss_pred --cceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEe-------------------------------------
Confidence 7799999974 334589999999999999998764222211
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC-CCCEEEE-e-CCCcEEEEeCCCCCc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFIS-A-DDLRINLWNLEISNQ 267 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s-~-~d~~i~iwd~~~~~~ 267 (515)
. + .....+...++|++ |.+++++ + +...|.+.|++.+..
T Consensus 237 --------------------E----~--------------p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t 278 (364)
T KOG0290|consen 237 --------------------E----D--------------PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT 278 (364)
T ss_pred --------------------c----C--------------CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc
Confidence 0 0 01134566788887 4556666 4 688999999997765
Q ss_pred ccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 347 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (515)
... .+++|.+.|+.++|.|..+..|.+++.|..+.+||+.+... .....+...+. -.+.|..
T Consensus 279 pva-------~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~----------~~~~dPilay~-a~~EVNq 340 (364)
T KOG0290|consen 279 PVA-------RLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR----------ENGEDPILAYT-AGGEVNQ 340 (364)
T ss_pred cee-------hhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc----------cCCCCchhhhh-ccceeee
Confidence 542 78899999999999999889999999999999999976432 00001111111 3367999
Q ss_pred EEEcc-CCCEEEEEcCCeEEEE
Q 010206 348 IKFAR-NGRHILSRDYMTLKLW 368 (515)
Q Consensus 348 ~~~s~-~~~~l~s~~~~~i~iw 368 (515)
+.|++ .+..++.+..+++.+.
T Consensus 341 i~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 341 IQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred eeecccCCCEEEEEecCeeeEE
Confidence 99996 6778887766555543
No 205
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=2.9e-14 Score=121.35 Aligned_cols=266 Identities=12% Similarity=0.153 Sum_probs=166.5
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccccee
Q 010206 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (515)
Q Consensus 36 ~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (515)
-.+.-++|++.-..+|++..|-.|++|+-..... ..++... +..|
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~p------------------------t~Lks~s-----------Qrnv 143 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP------------------------TKLKSVS-----------QRNV 143 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCCC------------------------ceecchh-----------hcce
Confidence 4578899999777889999999999999665221 1122111 1559
Q ss_pred EEEEEeecCCCcEEEeeeCCCeEEEEEccCCee-EEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCC
Q 010206 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV-KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (515)
Q Consensus 116 ~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~ 194 (515)
++++|-|-.. +.|++|+.. -|.+|.....-. ...
T Consensus 144 tclawRPlsa-selavgCr~-gIciW~~s~tln~~r~------------------------------------------- 178 (445)
T KOG2139|consen 144 TCLAWRPLSA-SELAVGCRA-GICIWSDSRTLNANRN------------------------------------------- 178 (445)
T ss_pred eEEEeccCCc-ceeeeeecc-eeEEEEcCcccccccc-------------------------------------------
Confidence 9999977443 467777764 599998764211 000
Q ss_pred CCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCccccee
Q 010206 195 NDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIV 272 (515)
Q Consensus 195 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~ 272 (515)
..+...+...+.. -.+| ..|+++.|++||..++++ .|..|+|||+.++....-
T Consensus 179 ----~~~~s~~~~qvl~------------------~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL-- 233 (445)
T KOG2139|consen 179 ----IRMMSTHHLQVLQ------------------DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPL-- 233 (445)
T ss_pred ----cccccccchhhee------------------CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccc--
Confidence 0111111111111 1355 789999999999999997 799999999998765421
Q ss_pred cccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEcc
Q 010206 273 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 352 (515)
Q Consensus 273 ~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 352 (515)
+ ....+.+.-+.|+||+ ..|+.+.-|+..++|+....-...+ ..-..+.|...+|+|
T Consensus 234 --~----~~glgg~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt~er----------------w~lgsgrvqtacWsp 290 (445)
T KOG2139|consen 234 --I----PKGLGGFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWTKER----------------WILGSGRVQTACWSP 290 (445)
T ss_pred --c----ccCCCceeeEEEcCCC-CEEEEecccceeeeehhcccceecc----------------eeccCCceeeeeecC
Confidence 1 1235668899999999 8999999999999996544321111 011125799999999
Q ss_pred CCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccc--ccccccc-----C--CCccceeeEEEcCCCCEEEEecCCC--
Q 010206 353 NGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRP--KLCDLYE-----N--DSIFDKFECCLSGDGGRVATGSYSN-- 421 (515)
Q Consensus 353 ~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~--~~~~~v~~~~~s~~~~~l~s~s~dg-- 421 (515)
+|++|.....+.-++|.+...++..... ....... .+.++.+ . -+-.+..+++|+|.|.+||+.-..+
T Consensus 291 cGsfLLf~~sgsp~lysl~f~~~~~~~~-~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~ 369 (445)
T KOG2139|consen 291 CGSFLLFACSGSPRLYSLTFDGEDSVFL-RPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSF 369 (445)
T ss_pred CCCEEEEEEcCCceEEEEeecCCCcccc-CcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCch
Confidence 9999887766677788776533332211 1111000 0111111 0 0111345899999999999764432
Q ss_pred ------cEEEEecCC
Q 010206 422 ------LFRVFGCSE 430 (515)
Q Consensus 422 ------~i~iw~~~~ 430 (515)
.|.+||...
T Consensus 370 v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 370 VLLCKLHISRFDTRK 384 (445)
T ss_pred hhhhhhhhhhhcccc
Confidence 355566653
No 206
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=2.2e-15 Score=143.45 Aligned_cols=231 Identities=13% Similarity=0.161 Sum_probs=147.9
Q ss_pred cccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--C--CCcEEEEeCCCCCcccceecccCccc
Q 010206 204 VSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--D--DLRINLWNLEISNQSFNIVDVKPANM 279 (515)
Q Consensus 204 ~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~--d~~i~iwd~~~~~~~~~~~~~~~~~~ 279 (515)
+..|.+|| ..... .+. +..|...+.+..|+|||+.|+.. . +..|++||+.+++... +. .+
T Consensus 183 ~~~i~i~d--~dg~~-------~~~-lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~-----~~ 246 (429)
T PRK01742 183 PYEVRVAD--YDGFN-------QFI-VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VA-----SF 246 (429)
T ss_pred eEEEEEEC--CCCCC-------ceE-eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-Ee-----cC
Confidence 46788777 22211 111 35677789999999999999875 2 3479999998654321 11 22
Q ss_pred cccCCceEEEEEecCCCcEEEEE-ecCCeEEEE--ecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCE
Q 010206 280 EDLTEVITSAEFHPTHCNMLAYS-SSKGSIRLI--DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH 356 (515)
Q Consensus 280 ~~~~~~i~~i~~~p~~~~~l~~~-~~dg~i~~w--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 356 (515)
.++ ...++|+||| +.|+.+ +.+|.+.|| |+.++.. .. +..+...+....|+|||+.
T Consensus 247 ~g~---~~~~~wSPDG-~~La~~~~~~g~~~Iy~~d~~~~~~-----~~------------lt~~~~~~~~~~wSpDG~~ 305 (429)
T PRK01742 247 RGH---NGAPAFSPDG-SRLAFASSKDGVLNIYVMGANGGTP-----SQ------------LTSGAGNNTEPSWSPDGQS 305 (429)
T ss_pred CCc---cCceeECCCC-CEEEEEEecCCcEEEEEEECCCCCe-----Ee------------eccCCCCcCCEEECCCCCE
Confidence 223 3468999999 666665 468876665 5544432 11 2223356788999999998
Q ss_pred EEEEc-C-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc
Q 010206 357 ILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 357 l~s~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
|+..+ . +...||++...+.....+ .+.. ....|+|||++|+..+.++ +.+||+.++...
T Consensus 306 i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~-----------------~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~ 366 (429)
T PRK01742 306 ILFTSDRSGSPQVYRMSASGGGASLV-GGRG-----------------YSAQISADGKTLVMINGDN-VVKQDLTSGSTE 366 (429)
T ss_pred EEEEECCCCCceEEEEECCCCCeEEe-cCCC-----------------CCccCCCCCCEEEEEcCCC-EEEEECCCCCeE
Confidence 87654 3 788999887533333322 1211 1567999999998887765 566999887433
Q ss_pred eeeeccCCCceeeEEECCCCCeeEeecCCCeEEEe-----cCCCCCccccCCccccccCCeeEEEEcCCC
Q 010206 435 STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRV-----KGADNSALDANGNAFDFSMKLLHLAWHPSE 499 (515)
Q Consensus 435 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~-----~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 499 (515)
.. .... ....+.|+|+++.+++++.++...++ ++.... ....+.+.+..++|||-.
T Consensus 367 ~l-t~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~------~l~~~~g~~~~p~wsp~~ 427 (429)
T PRK01742 367 VL-SSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKA------RLPGSDGQVKFPAWSPYL 427 (429)
T ss_pred Ee-cCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceE------EccCCCCCCCCcccCCCC
Confidence 21 1221 23567899999999999988877651 222211 222456778999999853
No 207
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.69 E-value=5.1e-15 Score=144.70 Aligned_cols=240 Identities=12% Similarity=0.181 Sum_probs=142.8
Q ss_pred cccccchhhhhcccccccccccccceEEEEECCCC-CeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccce
Q 010206 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR 91 (515)
Q Consensus 13 ~~~~w~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g-~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (515)
.+..|++... ...+...|...|..++.++.. .+|++|+.||+|++|+...-...+ ..++
T Consensus 1030 p~~gW~p~G~----lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~----------------~s~r 1089 (1431)
T KOG1240|consen 1030 PPPGWNPRGI----LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG----------------GSAR 1089 (1431)
T ss_pred CCCCCCccce----EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc----------------ceee
Confidence 3445777643 334567899999999988855 999999999999999976433210 0111
Q ss_pred eeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCC
Q 010206 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (515)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (515)
...++..- ..++.++..++. +..+++++.||.|++.++.....................|.+..
T Consensus 1090 S~ltys~~------------~sr~~~vt~~~~--~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~-- 1153 (1431)
T KOG1240|consen 1090 SELTYSPE------------GSRVEKVTMCGN--GDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVS-- 1153 (1431)
T ss_pred eeEEEecc------------CCceEEEEeccC--CCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEE--
Confidence 11112211 266888888654 55899999999999999876321111100000000000111110
Q ss_pred CcCCCceeecCCCccccccccCCCC-CCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEE
Q 010206 172 VSAIPKSYMANGGCGERNFGCASND-SSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 250 (515)
Q Consensus 172 ~~~~~~~~~~~g~~l~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 250 (515)
.-++.. .... .++.+..-+.+..||+ ......-..+ .....+.|++++.+|.+.+++
T Consensus 1154 ----m~a~~~-----------~~~S~~lvy~T~~~~iv~~D~--r~~~~~w~lk-----~~~~hG~vTSi~idp~~~Wlv 1211 (1431)
T KOG1240|consen 1154 ----MHAFTA-----------IVQSHVLVYATDLSRIVSWDT--RMRHDAWRLK-----NQLRHGLVTSIVIDPWCNWLV 1211 (1431)
T ss_pred ----eecccc-----------cccceeEEEEEeccceEEecc--hhhhhHHhhh-----cCccccceeEEEecCCceEEE
Confidence 001111 1111 3366667778888883 2221110000 123447899999999999999
Q ss_pred Ee-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCC--cEEEEEe--cCCeEEEEecCccc
Q 010206 251 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC--NMLAYSS--SKGSIRLIDMRQSA 317 (515)
Q Consensus 251 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~--~~l~~~~--~dg~i~~wd~~~~~ 317 (515)
.| ..|.+.+||++-....... . ..+..+|+.+..+|..+ ...++++ ..+.+.+|++.+|.
T Consensus 1212 iGts~G~l~lWDLRF~~~i~sw------~-~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1212 IGTSRGQLVLWDLRFRVPILSW------E-HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred EecCCceEEEEEeecCceeecc------c-CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 99 8999999999855443221 2 22447788777776543 3444444 47889999999884
No 208
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.69 E-value=6.9e-15 Score=123.12 Aligned_cols=263 Identities=14% Similarity=0.204 Sum_probs=179.2
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccce
Q 010206 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (515)
Q Consensus 35 ~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (515)
..+|+|.+|++|+..+|++..+..|.||.....+. +....++..|. ..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~--------------------w~~~htls~Hd------------~~ 57 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL--------------------WEPAHTLSEHD------------KI 57 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCC--------------------ceeceehhhhC------------cc
Confidence 47899999999999999999999999999876551 33556788888 88
Q ss_pred eEEEEEeecCCCcEEEeeeCCCeEEEEEc-cCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccC
Q 010206 115 INKIRWCQSANSALYLLSTNDKTIKLWKV-QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (515)
Q Consensus 115 v~~l~~~~~~~~~~l~~~~~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~ 193 (515)
|+.|+|.|. .+.|++++.|+.-++|.. ..++.+....
T Consensus 58 vtgvdWap~--snrIvtcs~drnayVw~~~~~~~Wkptlv---------------------------------------- 95 (361)
T KOG1523|consen 58 VTGVDWAPK--SNRIVTCSHDRNAYVWTQPSGGTWKPTLV---------------------------------------- 95 (361)
T ss_pred eeEEeecCC--CCceeEccCCCCccccccCCCCeecccee----------------------------------------
Confidence 999999665 448999999999999987 3333222211
Q ss_pred CCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccccee
Q 010206 194 SNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 272 (515)
Q Consensus 194 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 272 (515)
+..+...++++.|+|.++.|++| ....|.+|-++..+.-.-
T Consensus 96 ------------------------------------LlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWV-- 137 (361)
T KOG1523|consen 96 ------------------------------------LLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWV-- 137 (361)
T ss_pred ------------------------------------EEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceeh--
Confidence 24566889999999999999999 688888988775432100
Q ss_pred cccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEcc
Q 010206 273 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 352 (515)
Q Consensus 273 ~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 352 (515)
....-..+...|.++.|+|++ -+++.|+.|+..|+|..-- +..+.+..+ +|
T Consensus 138 --sKhikkPirStv~sldWhpnn-VLlaaGs~D~k~rVfSayI--------K~Vdekpap------------------~p 188 (361)
T KOG1523|consen 138 --SKHIKKPIRSTVTSLDWHPNN-VLLAAGSTDGKCRVFSAYI--------KGVDEKPAP------------------TP 188 (361)
T ss_pred --hhhhCCccccceeeeeccCCc-ceecccccCcceeEEEEee--------eccccCCCC------------------CC
Confidence 000112357789999999998 8999999999999987522 111111100 11
Q ss_pred CCCEEEEEcCCeEEEEEeeCC-CCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCC
Q 010206 353 NGRHILSRDYMTLKLWDINMD-SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 353 ~~~~l~s~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
|+-+++ +..+..+....+. +..+.|+|+|..|+-.+.|..+.+-|....
T Consensus 189 ---------------Wgsk~PFG~lm~E~~~~ggw---------------vh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 189 ---------------WGSKMPFGQLMSEASSSGGW---------------VHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred ---------------CccCCcHHHHHHhhccCCCc---------------eeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 111111 2222233222222 458999999999999999999999998765
Q ss_pred CcceeeeccCCCceeeEEECCC----------CCeeEeecCCCeEEE
Q 010206 432 SAESTTLEASKNPMRRQVQTPS----------RPSRPLGSLSGVVRR 468 (515)
Q Consensus 432 ~~~~~~~~~~~~~v~~~~~~~~----------~~~l~s~~~d~~v~l 468 (515)
.+....+....-|..++.|-.+ ++.+.+.+++|....
T Consensus 239 ~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~c~P~lf~~~~~~~l~~ 285 (361)
T KOG1523|consen 239 SERVQSVATAQLPLLSVSWISENSVVAAGYDCGPVLFVTDEEGGLSF 285 (361)
T ss_pred chhccchhhccCCceeeEeecCCceeecCCCCCceEEEeccccceee
Confidence 4444454444456666655322 456666666654433
No 209
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.69 E-value=7.7e-15 Score=123.23 Aligned_cols=320 Identities=13% Similarity=0.139 Sum_probs=196.3
Q ss_pred ccceEEEEECCCCCeEEe-ecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccc
Q 010206 35 VDIISAIEFDKSGDHLAT-GDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (515)
Q Consensus 35 ~~~v~~v~~s~~g~~las-g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (515)
-+.|.-+.|+.|..+++. ...++.|.+|++...+ +. ..+.... .
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe---------------------w~--ckIdeg~------------a 92 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE---------------------WY--CKIDEGQ------------A 92 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecce---------------------eE--EEeccCC------------C
Confidence 366788999988776554 5688899999986543 22 2222222 6
Q ss_pred eeEEEEEeecCCCc-EEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 114 KINKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 114 ~v~~l~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
.+.+++|+ ++|+ .|.++..|-.|.+|.+.+.+...+.... ..+. ..+|.|||+....+...
T Consensus 93 gls~~~WS--PdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK---------~~~k-------g~~f~~dg~f~ai~sRr 154 (447)
T KOG4497|consen 93 GLSSISWS--PDGRHILLTSEFDLRITVWSLNTQKGYLLPHPK---------TNVK-------GYAFHPDGQFCAILSRR 154 (447)
T ss_pred cceeeeEC--CCcceEeeeecceeEEEEEEeccceeEEecccc---------cCce-------eEEECCCCceeeeeecc
Confidence 79999995 5564 5555677999999999987755443221 1111 77999999987433222
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeC---CCcEEEEeCCCCCccc
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISAD---DLRINLWNLEISNQSF 269 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~---d~~i~iwd~~~~~~~~ 269 (515)
...|++-..+. +-|. ..+. ..-.....+.+.|+|||..|++=+ +-.|..|.
T Consensus 155 DCkdyv~i~~c----~~W~-------------ll~~-f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-------- 208 (447)
T KOG4497|consen 155 DCKDYVQISSC----KAWI-------------LLKE-FKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-------- 208 (447)
T ss_pred cHHHHHHHHhh----HHHH-------------HHHh-cCCCcccccCceECCCCcEEEEecchhhheeeeee--------
Confidence 22221110000 0011 0111 122345567899999998877531 22222221
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCccccccccc--------------------------
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS-------------------------- 323 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-------------------------- 323 (515)
-.-.+..++|+|-+ ++|+.|+.|+.+|+.+--+-+...+..
T Consensus 209 ------------~~lG~k~v~wsP~~-qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~ 275 (447)
T KOG4497|consen 209 ------------RGLGLKFVEWSPCN-QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHH 275 (447)
T ss_pred ------------eccceeEEEecccc-ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccc
Confidence 13457889999988 899999999999886533221110000
Q ss_pred ------------------ceeeeccCCCcccc------ccccccceeEEEEccCCCEEEEEcC---CeEEEEEeeCCCCC
Q 010206 324 ------------------KLFEEQEAPGTRSF------FTEIIASISDIKFARNGRHILSRDY---MTLKLWDINMDSGP 376 (515)
Q Consensus 324 ------------------~~~~~~~~~~~~~~------~~~~~~~i~~~~~s~~~~~l~s~~~---~~i~iwd~~~~~~~ 376 (515)
..++....+....+ +..-...+.-++|++|..++++..| +.+.+||+++ .+.
T Consensus 276 cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~-l~l 354 (447)
T KOG4497|consen 276 CLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN-LKL 354 (447)
T ss_pred ccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh-hhh
Confidence 00000000000000 1112346778999999999999765 8999999985 443
Q ss_pred eeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCe
Q 010206 377 VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPS 456 (515)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 456 (515)
...+. .... |....|+|....|+.+....++++|.... +...-.....-.|..+.|..+|..
T Consensus 355 ~avLi-Qk~p---------------iraf~WdP~~prL~vctg~srLY~W~psg--~~~V~vP~~GF~i~~l~W~~~g~~ 416 (447)
T KOG4497|consen 355 HAVLI-QKHP---------------IRAFEWDPGRPRLVVCTGKSRLYFWAPSG--PRVVGVPKKGFNIQKLQWLQPGEF 416 (447)
T ss_pred hhhhh-hccc---------------eeEEEeCCCCceEEEEcCCceEEEEcCCC--ceEEecCCCCceeeeEEecCCCcE
Confidence 33332 2222 34889999998888887778899999873 343333444478889999999999
Q ss_pred eEeecCCCe
Q 010206 457 RPLGSLSGV 465 (515)
Q Consensus 457 l~s~~~d~~ 465 (515)
++..+.|..
T Consensus 417 i~l~~kDaf 425 (447)
T KOG4497|consen 417 IVLCGKDAF 425 (447)
T ss_pred EEEEcCCce
Confidence 888887753
No 210
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=2.2e-13 Score=116.46 Aligned_cols=117 Identities=15% Similarity=0.227 Sum_probs=93.4
Q ss_pred CcCCeEEEEecCCCCEEEE-e--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCe-E
Q 010206 233 HDYHINSISNNSDGETFIS-A--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS-I 308 (515)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~s-~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~-i 308 (515)
+...+.++++++.+.+++. + ..|.|.+||..+-+... .+..|.+.+.+++|+++| .+||+++..|+ |
T Consensus 128 n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~--------~I~aH~~~lAalafs~~G-~llATASeKGTVI 198 (391)
T KOG2110|consen 128 NPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVN--------TINAHKGPLAALAFSPDG-TLLATASEKGTVI 198 (391)
T ss_pred CccceEeeccCCCCceEEecCCCCCceEEEEEcccceeee--------EEEecCCceeEEEECCCC-CEEEEeccCceEE
Confidence 4456777778888888887 3 58999999998665443 557899999999999999 99999999987 7
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeC
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM 372 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~ 372 (515)
|+|.+.+|+...+ |.-.. ....|.+++|+|++++|++.++ ++|+||.+..
T Consensus 199 RVf~v~~G~kl~e----FRRG~----------~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 199 RVFSVPEGQKLYE----FRRGT----------YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEEcCCccEeee----eeCCc----------eeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 8999999876433 22111 1256999999999999999877 9999999874
No 211
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.67 E-value=2.9e-14 Score=119.40 Aligned_cols=238 Identities=12% Similarity=0.097 Sum_probs=166.9
Q ss_pred cCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEe
Q 010206 234 DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 312 (515)
Q Consensus 234 ~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd 312 (515)
..+|+|.+|++|+..++.+ ....|.||.....+.-.. ..++..|...|+.|+|+|.. +.|++++.|+.-++|.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~-----~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEP-----AHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWT 83 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCcee-----ceehhhhCcceeEEeecCCC-CceeEccCCCCccccc
Confidence 3789999999999999999 888999999875542211 13678899999999999998 8999999999999999
Q ss_pred cCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCC--eeeEe-eeccccc
Q 010206 313 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGP--VATFQ-VHEHLRP 388 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~--~~~~~-~~~~~~~ 388 (515)
...+..-. +..++..|....+++.|+|.++.+++|+. ..|.||=+..+..- .+.++ .+..
T Consensus 84 ~~~~~~Wk-------------ptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirS--- 147 (361)
T KOG1523|consen 84 QPSGGTWK-------------PTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRS--- 147 (361)
T ss_pred cCCCCeec-------------cceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCcccc---
Confidence 85443211 11224445678999999999999999987 88888887642111 00010 0011
Q ss_pred cccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCC-----------------CcceeeeccCCCceeeEEEC
Q 010206 389 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG-----------------SAESTTLEASKNPMRRQVQT 451 (515)
Q Consensus 389 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~-----------------~~~~~~~~~~~~~v~~~~~~ 451 (515)
.|+++.|+|++-+|++|+.|+..++|..--. +++..++......+..+.|+
T Consensus 148 ------------tv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs 215 (361)
T KOG1523|consen 148 ------------TVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFS 215 (361)
T ss_pred ------------ceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeC
Confidence 1569999999999999999999999865211 01112222345678899999
Q ss_pred CCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcC
Q 010206 452 PSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS 507 (515)
Q Consensus 452 ~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~ 507 (515)
|+|..|+-.+.|.++.+.+...+.+. ....... .-+.+++.|-.+...++.|-+
T Consensus 216 ~sG~~lawv~Hds~v~~~da~~p~~~-v~~~~~~-~lP~ls~~~ise~~vv~ag~~ 269 (361)
T KOG1523|consen 216 PSGNRLAWVGHDSTVSFVDAAGPSER-VQSVATA-QLPLLSVSWISENSVVAAGYD 269 (361)
T ss_pred CCCCEeeEecCCCceEEeecCCCchh-ccchhhc-cCCceeeEeecCCceeecCCC
Confidence 99999999999999999443333210 1111111 256678888766555544433
No 212
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=5.6e-14 Score=113.13 Aligned_cols=246 Identities=12% Similarity=0.133 Sum_probs=158.0
Q ss_pred CceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeeccccc---ccccceeeeeeccCcCCeEEEEecCCCCEEEEe
Q 010206 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQET---NLVAGCRRIYAHAHDYHINSISNNSDGETFISA 252 (515)
Q Consensus 176 ~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 252 (515)
.-+++|.++++ +.|+.+|.|-+.. +..... ...++.......+|.++|..++|. ..+|++|
T Consensus 15 ~qa~sp~~~~l------------~agn~~G~iav~s--l~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~ 78 (325)
T KOG0649|consen 15 AQAISPSKQYL------------FAGNLFGDIAVLS--LKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSG 78 (325)
T ss_pred HHhhCCcceEE------------EEecCCCeEEEEE--ehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeec
Confidence 55788888888 9999999999988 443322 222222222237999999999998 5578888
Q ss_pred CCCcEEEEeCCCCCc---ccceecccCcccc--ccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceee
Q 010206 253 DDLRINLWNLEISNQ---SFNIVDVKPANME--DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 327 (515)
Q Consensus 253 ~d~~i~iwd~~~~~~---~~~~~~~~~~~~~--~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 327 (515)
.||.|+=|..+...+ ...++.+++..-. ..-..|+++-..|.. +-++.++.|+.+.-||+++|+..
T Consensus 79 gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e-nSi~~AgGD~~~y~~dlE~G~i~-------- 149 (325)
T KOG0649|consen 79 GDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE-NSILFAGGDGVIYQVDLEDGRIQ-------- 149 (325)
T ss_pred cCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC-CcEEEecCCeEEEEEEecCCEEE--------
Confidence 889999998765433 1222222221101 112457888899987 56666779999999999999863
Q ss_pred eccCCCccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEE
Q 010206 328 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC 406 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 406 (515)
..+++|+..|.++.--.....+++|+ ||++++||.++ ++.++.+........ +.. +.. .+-.+
T Consensus 150 --------r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt-~k~v~~ie~yk~~~~-lRp--~~g----~wiga 213 (325)
T KOG0649|consen 150 --------REYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT-QKHVSMIEPYKNPNL-LRP--DWG----KWIGA 213 (325)
T ss_pred --------EEEcCCcceeeeeeecccCcceeecCCCccEEEEeccc-cceeEEeccccChhh-cCc--ccC----ceeEE
Confidence 34788999999999855445566665 59999999997 888777754433210 000 000 11244
Q ss_pred EcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEE
Q 010206 407 LSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVR 467 (515)
Q Consensus 407 ~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~ 467 (515)
..-+..+|+.|+. ..+.+|.+++.++. +++. -..++..+.|-. ..+++++....|.
T Consensus 214 la~~edWlvCGgG-p~lslwhLrsse~t-~vfp-ipa~v~~v~F~~--d~vl~~G~g~~v~ 269 (325)
T KOG0649|consen 214 LAVNEDWLVCGGG-PKLSLWHLRSSEST-CVFP-IPARVHLVDFVD--DCVLIGGEGNHVQ 269 (325)
T ss_pred EeccCceEEecCC-CceeEEeccCCCce-EEEe-cccceeEeeeec--ceEEEecccccee
Confidence 4556678887664 57899999976433 3332 123444555543 3556666544444
No 213
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.66 E-value=6.2e-16 Score=144.98 Aligned_cols=251 Identities=16% Similarity=0.176 Sum_probs=175.2
Q ss_pred eccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010206 230 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 308 (515)
Q Consensus 230 ~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i 308 (515)
+.+|...|.|+.|...|.++++| +|..++||..++.... ....+|.+.|+.++.+.+. .++++++.|..|
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~l--------As~rGhs~ditdlavs~~n-~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCL--------ASCRGHSGDITDLAVSSNN-TMIAAASNDKVI 256 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhh--------ccCCCCccccchhccchhh-hhhhhcccCceE
Confidence 47899999999999999999999 8999999998876654 3778999999999999987 899999999999
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCC-------------CC
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMD-------------SG 375 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~-------------~~ 375 (515)
++|.+..+..+ .++.+|++.|++++|+|-. .++.+|++++||.+-. +.
T Consensus 257 rvWrl~~~~pv----------------svLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~~~~~~ 317 (1113)
T KOG0644|consen 257 RVWRLPDGAPV----------------SVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLKFTEKD 317 (1113)
T ss_pred EEEecCCCchH----------------HHHhccccceeeeccCccc---cCCCCCceEeccccccccccCCCCCCccccc
Confidence 99999988653 3578999999999999965 4455699999998720 00
Q ss_pred CeeeEeeeccccccccccc--cCCCccceeeEEEcCCC-----------CEEEEecCCCcEEEEecCCCCcceeeeccCC
Q 010206 376 PVATFQVHEHLRPKLCDLY--ENDSIFDKFECCLSGDG-----------GRVATGSYSNLFRVFGCSEGSAESTTLEASK 442 (515)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~-----------~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~ 442 (515)
.+..+....... ...... ........-.++|...+ .+.+++-.+-.+.+|++.++ .+.+.+.+|.
T Consensus 318 ~~~s~~~~~~~~-~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g-~l~H~l~ghs 395 (1113)
T KOG0644|consen 318 LVDSILFENNGD-RFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG-QLLHNLMGHS 395 (1113)
T ss_pred ceeeeecccccc-ccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccc-hhhhhhcccc
Confidence 011111000000 000000 00000111122222222 23445556677889999988 6668999999
Q ss_pred CceeeEEECCCCCe-eEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcC-CcEEEE
Q 010206 443 NPMRRQVQTPSRPS-RPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS-NSLYMY 513 (515)
Q Consensus 443 ~~v~~~~~~~~~~~-l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~-~~~~i~ 513 (515)
.++..+.++|-... ..+++.||...+++-++-.+ +.....+ ...+...+||+||..+++..+ +.++|+
T Consensus 396 d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p--ik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 396 DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP--IKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred cceeeeeecCCCcHhhhhccCCCceEeeecccCCc--ceeeecc-cceeeccccCCCCceEecCCCCCceEEe
Confidence 99999999997765 57788999999944443321 2222233 466788999999999997765 446554
No 214
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=4e-14 Score=120.54 Aligned_cols=244 Identities=11% Similarity=0.141 Sum_probs=153.0
Q ss_pred CCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEec
Q 010206 235 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 313 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~ 313 (515)
..+..++|++.-..|+++ .|-.|++||-.. +....+. ...+..|++++|.|.+...|+.|+..| |.+|..
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lk-------s~sQrnvtclawRPlsaselavgCr~g-IciW~~ 169 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLK-------SVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSD 169 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceec-------chhhcceeEEEeccCCcceeeeeecce-eEEEEc
Confidence 457789999976667777 799999999775 2222110 113566999999999878888888765 789986
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--CeEEEEEeeCCCCCeeeE-eeeccccccc
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATF-QVHEHLRPKL 390 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~~~~~~~~~-~~~~~~~~~~ 390 (515)
.......+..+... ..........+| .+|++++|.+||..+++++. ..|.|||..+ +..+... .+..+
T Consensus 170 s~tln~~r~~~~~s--~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt-g~~~pL~~~glgg----- 240 (445)
T KOG2139|consen 170 SRTLNANRNIRMMS--THHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDT-GQKIPLIPKGLGG----- 240 (445)
T ss_pred Cccccccccccccc--ccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCC-CCcccccccCCCc-----
Confidence 54322221111000 000001112334 68999999999999999763 8999999987 3332222 22211
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEee-cCCCeEEE-
Q 010206 391 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG-SLSGVVRR- 468 (515)
Q Consensus 391 ~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~d~~v~l- 468 (515)
+.-+.|||||.+|+.++-|+..++|+.... .......-....+..-+|+|.|++|+.. +..-.+.-
T Consensus 241 -----------~slLkwSPdgd~lfaAt~davfrlw~e~q~-wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl 308 (445)
T KOG2139|consen 241 -----------FSLLKWSPDGDVLFAATCDAVFRLWQENQS-WTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSL 308 (445)
T ss_pred -----------eeeEEEcCCCCEEEEecccceeeeehhccc-ceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEE
Confidence 336899999999999999999999965533 1212222333488899999999976544 33333332
Q ss_pred -ecCCCCC--------ccccCCccc---------cccCCeeEEEEcCCCCEEEEEcCC
Q 010206 469 -VKGADNS--------ALDANGNAF---------DFSMKLLHLAWHPSENSIACAASN 508 (515)
Q Consensus 469 -~~~~~~~--------~~~~~~~~~---------~~~~~i~~~~~s~~~~~la~~~~~ 508 (515)
..+.... ...+..++. -..+.+.+++|.|.|++||+.-..
T Consensus 309 ~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 309 TFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred eecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 1111110 000111110 124678999999999999987543
No 215
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.64 E-value=1.3e-15 Score=133.50 Aligned_cols=229 Identities=14% Similarity=0.130 Sum_probs=165.1
Q ss_pred CCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecC
Q 010206 235 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 314 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~ 314 (515)
..|.++.|-.+.++||++....+++||-. +.... -+. ....|..+.|-|.. .+|++++..|.++.-|+.
T Consensus 171 Etv~Dv~~LHneq~~AVAQK~y~yvYD~~-GtElH--------Clk-~~~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS 239 (545)
T KOG1272|consen 171 ETVRDVTFLHNEQFFAVAQKKYVYVYDNN-GTELH--------CLK-RHIRVARLEFLPYH-FLLVAASEAGFLKYQDVS 239 (545)
T ss_pred hhhhhhhhhcchHHHHhhhhceEEEecCC-CcEEe--------ehh-hcCchhhhcccchh-heeeecccCCceEEEeec
Confidence 45677888888889999988999999965 33221 112 24568899999998 899999999999999999
Q ss_pred cccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccccccccc
Q 010206 315 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDL 393 (515)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 393 (515)
+|+++.. +....+.+..++-+|-.-.+-.|.. |+|.+|...+ ..++..+..|.+.+.
T Consensus 240 ~GklVa~----------------~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s-kePLvKiLcH~g~V~----- 297 (545)
T KOG1272|consen 240 TGKLVAS----------------IRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS-KEPLVKILCHRGPVS----- 297 (545)
T ss_pred hhhhhHH----------------HHccCCccchhhcCCccceEEEcCCCceEEecCCCC-cchHHHHHhcCCCcc-----
Confidence 9987643 2222356777888887778888866 9999999987 888888888887744
Q ss_pred ccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCC
Q 010206 394 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGAD 473 (515)
Q Consensus 394 ~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~ 473 (515)
++++.++|+|++|.+.|..++|||++....+ .++.. ..+...+.+|..| ++..+....|.++.+..
T Consensus 298 ----------siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql-~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~ 363 (545)
T KOG1272|consen 298 ----------SIAVDRGGRYMATTGLDRKVKIWDLRNFYQL-HTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWKDAL 363 (545)
T ss_pred ----------eEEECCCCcEEeecccccceeEeeecccccc-ceeec-CCCcccccccccc--ceeeecCCeeeeehhhh
Confidence 9999999999999999999999999977433 33333 3455666666543 44455556666622111
Q ss_pred CC--ccccCCccccccCCeeEEEEcCCCCEEEEEcCCcE
Q 010206 474 NS--ALDANGNAFDFSMKLLHLAWHPSENSIACAASNSL 510 (515)
Q Consensus 474 ~~--~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~ 510 (515)
.. ............+.|..+.|.|-...|-+|...|+
T Consensus 364 ~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 364 KGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGI 402 (545)
T ss_pred cCCCCCCcchhhhccCcccccceeccHHHeeeccccCCc
Confidence 10 00111111223568999999999999988876663
No 216
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.4e-14 Score=129.77 Aligned_cols=181 Identities=19% Similarity=0.197 Sum_probs=128.7
Q ss_pred eccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCC-CcEEEEEecCCe
Q 010206 230 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH-CNMLAYSSSKGS 307 (515)
Q Consensus 230 ~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~-~~~l~~~~~dg~ 307 (515)
+.+|.+-|+|+.|+.+|.+|++| +|-.+.|||.-..+.... --.+|...|.++.|-|.. .+++++|..|..
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs-------I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS-------ISTGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecchhcceeee-------eecccccceeEEeeeccCCCeEEEeccCcce
Confidence 58999999999999999999999 899999999985554433 236799999999999842 368999999999
Q ss_pred EEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCC-CEEEEEc-CCeEEEEEeeCCCCCeeeEeeecc
Q 010206 308 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILSRD-YMTLKLWDINMDSGPVATFQVHEH 385 (515)
Q Consensus 308 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~ 385 (515)
|++||+...+.-. ..+........+..|...|..++-.|++ ..+.+++ ||+|+-+|++.+..+......+..
T Consensus 119 i~lfdl~~~~~~~------~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~ 192 (758)
T KOG1310|consen 119 IKLFDLDSSKEGG------MDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSI 192 (758)
T ss_pred EEEEecccccccc------cccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHH
Confidence 9999997643211 0111112233456688899999999988 5566666 499999999853333322222221
Q ss_pred ccccccccccCCCccceeeEEEcCCC-CEEEEecCCCcEEEEecC
Q 010206 386 LRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 386 ~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~s~dg~i~iw~~~ 429 (515)
.+. |. .......++.++|.. .+|+.|+.|-..++||.+
T Consensus 193 l~n-----y~-~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 193 LVN-----YN-PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred HHH-----hc-hhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 111 11 111123478999965 578999999999999964
No 217
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=1.4e-13 Score=130.83 Aligned_cols=216 Identities=13% Similarity=0.146 Sum_probs=135.6
Q ss_pred cCcCCeEEEEecCCCCEEEEe----CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEE-EecCC
Q 010206 232 AHDYHINSISNNSDGETFISA----DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY-SSSKG 306 (515)
Q Consensus 232 ~~~~~v~~~~~~~~~~~l~s~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~-~~~dg 306 (515)
.+...+.+.+|+|||+.|+.. .+..|.+||+.+++.. .+....+.+..++|+||| +.|+. .+.+|
T Consensus 196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~---------~l~~~~~~~~~~~~SPDG-~~La~~~~~~g 265 (429)
T PRK03629 196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---------QVASFPRHNGAPAFSPDG-SKLAFALSKTG 265 (429)
T ss_pred cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE---------EccCCCCCcCCeEECCCC-CEEEEEEcCCC
Confidence 455678999999999998863 2457999999865432 111122334568999999 65554 34455
Q ss_pred --eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--CeEEEEEeeCCCCCeeeEee
Q 010206 307 --SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQV 382 (515)
Q Consensus 307 --~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~~~~~~~~~~~ 382 (515)
.|.+||+.+++... +..+...+....|+|||+.|+..++ +...||.+...+.....+..
T Consensus 266 ~~~I~~~d~~tg~~~~-----------------lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~ 328 (429)
T PRK03629 266 SLNLYVMDLASGQIRQ-----------------VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITW 328 (429)
T ss_pred CcEEEEEECCCCCEEE-----------------ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeec
Confidence 58889998765311 1111235678899999998877543 55556654432333334432
Q ss_pred eccccccccccccCCCccceeeEEEcCCCCEEEEecCC---CcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEe
Q 010206 383 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPL 459 (515)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d---g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 459 (515)
.... .....|+|||++|+..+.+ ..|++||+.++... .+... .......|+|||+.|+.
T Consensus 329 ~~~~---------------~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~--~Lt~~-~~~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 329 EGSQ---------------NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ--VLTDT-FLDETPSIAPNGTMVIY 390 (429)
T ss_pred CCCC---------------ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE--EeCCC-CCCCCceECCCCCEEEE
Confidence 2211 1268899999998876543 35888999877433 23221 12346789999999999
Q ss_pred ecCCCeE---EE--ecCCCCCccccCCccccccCCeeEEEEcCC
Q 010206 460 GSLSGVV---RR--VKGADNSALDANGNAFDFSMKLLHLAWHPS 498 (515)
Q Consensus 460 ~~~d~~v---~l--~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 498 (515)
.+.++.. .+ .+|.... ....+.+.+...+|+|-
T Consensus 391 ~s~~~~~~~l~~~~~~G~~~~------~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 391 SSSQGMGSVLNLVSTDGRFKA------RLPATDGQVKFPAWSPY 428 (429)
T ss_pred EEcCCCceEEEEEECCCCCeE------ECccCCCCcCCcccCCC
Confidence 9887653 33 2233222 12235678889999983
No 218
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=1.9e-13 Score=117.74 Aligned_cols=224 Identities=16% Similarity=0.194 Sum_probs=159.3
Q ss_pred CCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC--CeEEEEecCcccccccc
Q 010206 246 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--GSIRLIDMRQSALCDTH 322 (515)
Q Consensus 246 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d--g~i~~wd~~~~~~~~~~ 322 (515)
...|++| ++|.+.+|..+.+...-. ++..+.. ...+..+.-++..+.++++|+.. ..+.+||+.+.+.
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss----~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q---- 185 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSS----KLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ---- 185 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCccccc----cceeeec-CCceeeeccCCCCCceEecCchhcccceeeeeccccee----
Confidence 3366777 899999999874431100 0012222 34566777777777788889998 8899999988743
Q ss_pred cceeeeccCCCccccccccccceeEEEEccC--CCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCc
Q 010206 323 SKLFEEQEAPGTRSFFTEIIASISDIKFARN--GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSI 399 (515)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (515)
.|...+.+...--+ .-.-.++++.|-+. ...|++++. +.+++||.+.+.+|+..+......
T Consensus 186 --iw~aKNvpnD~L~L-rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~------------- 249 (412)
T KOG3881|consen 186 --IWSAKNVPNDRLGL-RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENP------------- 249 (412)
T ss_pred --eeeccCCCCccccc-eeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCc-------------
Confidence 33333222111000 01135788899886 788999987 999999999888888888766554
Q ss_pred cceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCcccc
Q 010206 400 FDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDA 479 (515)
Q Consensus 400 ~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~ 479 (515)
++++...|++++|++|..-|.+..||++.+......+++-...++.+..+|.++++|+++-|+.+|+.+.... .+
T Consensus 250 --is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr---kl 324 (412)
T KOG3881|consen 250 --ISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR---KL 324 (412)
T ss_pred --ceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc---hh
Confidence 4589999999999999999999999999885555668999999999999999999999999999999332220 11
Q ss_pred CCccccccCCeeEEEEcCCCC
Q 010206 480 NGNAFDFSMKLLHLAWHPSEN 500 (515)
Q Consensus 480 ~~~~~~~~~~i~~~~~s~~~~ 500 (515)
..+ ...+..++.+-+.++-+
T Consensus 325 l~k-vYvKs~lt~il~~~~~n 344 (412)
T KOG3881|consen 325 LHK-VYVKSRLTFILLRDDVN 344 (412)
T ss_pred hhh-hhhhccccEEEecCCcc
Confidence 111 11255667777766543
No 219
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=9.8e-13 Score=125.05 Aligned_cols=168 Identities=15% Similarity=0.175 Sum_probs=106.4
Q ss_pred EEEecCCCCEEEEe--CCC--cEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEec-CCeEEEE--
Q 010206 239 SISNNSDGETFISA--DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLI-- 311 (515)
Q Consensus 239 ~~~~~~~~~~l~s~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~-dg~i~~w-- 311 (515)
.+.|+|||+.|+.. .++ .|++||+++++.. .+..+...+....|+|+| +.|+..+. ++...+|
T Consensus 247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~---------~lt~~~~~~~~~~wSPDG-~~I~f~s~~~g~~~Iy~~ 316 (429)
T PRK03629 247 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR---------QVTDGRSNNTEPTWFPDS-QNLAYTSDQAGRPQVYKV 316 (429)
T ss_pred CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE---------EccCCCCCcCceEECCCC-CEEEEEeCCCCCceEEEE
Confidence 46899999988764 344 5888999765432 222334557789999999 66665554 4444555
Q ss_pred ecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-C---CeEEEEEeeCCCCCeeeEeeecccc
Q 010206 312 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHEHLR 387 (515)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~---~~i~iwd~~~~~~~~~~~~~~~~~~ 387 (515)
|+.++.. ..+. ..........|+|||++|+... + ..|.+||+.+ +. ...+.... .
T Consensus 317 d~~~g~~-----~~lt------------~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~-g~-~~~Lt~~~-~- 375 (429)
T PRK03629 317 NINGGAP-----QRIT------------WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-GG-VQVLTDTF-L- 375 (429)
T ss_pred ECCCCCe-----EEee------------cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCC-CC-eEEeCCCC-C-
Confidence 5554432 1111 1112356788999999988743 2 4688888875 33 33332111 0
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEecCCCc---EEEEecCCCCcceeeeccCCCceeeEEECCC
Q 010206 388 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL---FRVFGCSEGSAESTTLEASKNPMRRQVQTPS 453 (515)
Q Consensus 388 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~---i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~ 453 (515)
.....|+|||++|+..+.++. +.++++.. .....+..|...+...+|+|-
T Consensus 376 --------------~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G--~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 376 --------------DETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG--RFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred --------------CCCceECCCCCEEEEEEcCCCceEEEEEECCC--CCeEECccCCCCcCCcccCCC
Confidence 115789999999998887764 67777753 333567777777778888763
No 220
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.59 E-value=8.4e-12 Score=104.88 Aligned_cols=163 Identities=10% Similarity=0.201 Sum_probs=112.7
Q ss_pred CcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEE-EecCCeEEEE
Q 010206 233 HDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY-SSSKGSIRLI 311 (515)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~-~~~dg~i~~w 311 (515)
...+|.++.+.++ .|++.-.+.|++|.....-+....++. ........+++-..+. .+||. |-.-|.|++-
T Consensus 93 f~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~et-----~~NPkGlC~~~~~~~k-~~LafPg~k~GqvQi~ 164 (346)
T KOG2111|consen 93 FNSEIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVIET-----RSNPKGLCSLCPTSNK-SLLAFPGFKTGQVQIV 164 (346)
T ss_pred eccceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeeeec-----ccCCCceEeecCCCCc-eEEEcCCCccceEEEE
Confidence 3467888888765 566677788999998743322222111 1112223333333232 34444 3346899999
Q ss_pred ecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-C-eEEEEEeeCCCCCeeeEeeecccccc
Q 010206 312 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-M-TLKLWDINMDSGPVATFQVHEHLRPK 389 (515)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~-~i~iwd~~~~~~~~~~~~~~~~~~~~ 389 (515)
|+...+.- +..++.+|.+.|.|++++.+|..+|+++. | -|||||..+ +.+++.++......
T Consensus 165 dL~~~~~~--------------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~-g~~l~E~RRG~d~A-- 227 (346)
T KOG2111|consen 165 DLASTKPN--------------APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED-GTLLQELRRGVDRA-- 227 (346)
T ss_pred EhhhcCcC--------------CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC-CcEeeeeecCCchh--
Confidence 98765421 23457889999999999999999999986 4 579999997 88887776433221
Q ss_pred ccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCC
Q 010206 390 LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 390 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
.+.+++|||++.+|+.+|+.|+|+||.++..
T Consensus 228 -----------~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 228 -----------DIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred -----------eEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 2569999999999999999999999999864
No 221
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.58 E-value=4.2e-14 Score=124.28 Aligned_cols=298 Identities=10% Similarity=0.128 Sum_probs=198.4
Q ss_pred CCCccccccccccchhhhhcccccccccc----c------ccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccc
Q 010206 5 GGSSEAAAQPLEWKFSQVFGERTAGEEVQ----E------VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQR 74 (515)
Q Consensus 5 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~----h------~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~ 74 (515)
.|.-++...+.+|++.|- +-....++. | .-.-..+.++.+|++|+.|+..|.|-.+|+.+....
T Consensus 91 ~G~le~e~~EkT~~v~Q~--~Ia~~Vdi~sa~k~f~L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~---- 164 (545)
T KOG1272|consen 91 AGYLEAEGLEKTYKVRQD--DIAENVDIASATKHFDLSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLH---- 164 (545)
T ss_pred CCcccccCCcceeeeEHh--hhhhhccHHhHHhhccccccccCCeeeeecCCccEEEecCCccceeeeecccceee----
Confidence 466667778889988773 111111111 1 223456889999999999999999999999887753
Q ss_pred cCcccccccccCCccceeeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeec
Q 010206 75 RDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDW 154 (515)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 154 (515)
.++.-. +.|.++.|... . .+++....+.+.+||-..-++.++...
T Consensus 165 -------------------~Ei~v~-------------Etv~Dv~~LHn--e-q~~AVAQK~y~yvYD~~GtElHClk~~ 209 (545)
T KOG1272|consen 165 -------------------FEINVM-------------ETVRDVTFLHN--E-QFFAVAQKKYVYVYDNNGTELHCLKRH 209 (545)
T ss_pred -------------------eeeehh-------------hhhhhhhhhcc--h-HHHHhhhhceEEEecCCCcEEeehhhc
Confidence 222222 67999999643 3 355556678899999887776655443
Q ss_pred cCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCc
Q 010206 155 NVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHD 234 (515)
Q Consensus 155 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 234 (515)
. .+. .+.|.|.--.| ++++..|.++--|| ...+. ... +....
T Consensus 210 ~----------~v~-------rLeFLPyHfLL------------~~~~~~G~L~Y~DV--S~Gkl------Va~-~~t~~ 251 (545)
T KOG1272|consen 210 I----------RVA-------RLEFLPYHFLL------------VAASEAGFLKYQDV--STGKL------VAS-IRTGA 251 (545)
T ss_pred C----------chh-------hhcccchhhee------------eecccCCceEEEee--chhhh------hHH-HHccC
Confidence 2 222 56777776666 88899999997773 22221 111 13344
Q ss_pred CCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEec
Q 010206 235 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 313 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~ 313 (515)
+.+..++-+|-.-.+-+| ..|+|.+|.....+.+. .+..|.++|.+|++.++| +++++.+.|+.++|||+
T Consensus 252 G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLv--------KiLcH~g~V~siAv~~~G-~YMaTtG~Dr~~kIWDl 322 (545)
T KOG1272|consen 252 GRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLV--------KILCHRGPVSSIAVDRGG-RYMATTGLDRKVKIWDL 322 (545)
T ss_pred CccchhhcCCccceEEEcCCCceEEecCCCCcchHH--------HHHhcCCCcceEEECCCC-cEEeecccccceeEeee
Confidence 677788889999899999 89999999998777664 456799999999999999 99999999999999999
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCC--CCeeeEeeecccccccc
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDS--GPVATFQVHEHLRPKLC 391 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~ 391 (515)
++..... ++.. .-+...+++|..| +||.+-...+.||.-...+ .....+..|...
T Consensus 323 R~~~ql~----t~~t-------------p~~a~~ls~Sqkg-lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~----- 379 (545)
T KOG1272|consen 323 RNFYQLH----TYRT-------------PHPASNLSLSQKG-LLALSYGDHVQIWKDALKGSGHGETPYMNHRCG----- 379 (545)
T ss_pred ccccccc----eeec-------------CCCcccccccccc-ceeeecCCeeeeehhhhcCCCCCCcchhhhccC-----
Confidence 9865322 1111 1356778888655 4444433589999643211 111222222211
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEecCCC
Q 010206 392 DLYENDSIFDKFECCLSGDGGRVATGSYSN 421 (515)
Q Consensus 392 ~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg 421 (515)
..|..+.|.|-...|-.|-..|
T Consensus 380 --------~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 380 --------GPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred --------cccccceeccHHHeeeccccCC
Confidence 1245777877666555554444
No 222
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.57 E-value=1.3e-12 Score=120.27 Aligned_cols=320 Identities=10% Similarity=0.083 Sum_probs=178.2
Q ss_pred CeE-EeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEEEeecCCC
Q 010206 48 DHL-ATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS 126 (515)
Q Consensus 48 ~~l-asg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~ 126 (515)
+++ ++-..+|.|.|.|..+.+.. ..+.... ..-..+.| ++|+
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~-----------------------~~i~~~~------------~~h~~~~~--s~Dg 48 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVV-----------------------ARIPTGG------------APHAGLKF--SPDG 48 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEE-----------------------EEEE-ST------------TEEEEEE---TT-S
T ss_pred cEEEEEecCCCEEEEEECCCCeEE-----------------------EEEcCCC------------CceeEEEe--cCCC
Confidence 444 34556889999998876632 3333221 22334566 6778
Q ss_pred cEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCC-Ccc
Q 010206 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPG-GVS 205 (515)
Q Consensus 127 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~-~~~ 205 (515)
+++++++.|+.|.++|+.+.+..........+. .+++++||+++ ++++ ..+
T Consensus 49 r~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~----------------~i~~s~DG~~~------------~v~n~~~~ 100 (369)
T PF02239_consen 49 RYLYVANRDGTVSVIDLATGKVVATIKVGGNPR----------------GIAVSPDGKYV------------YVANYEPG 100 (369)
T ss_dssp SEEEEEETTSEEEEEETTSSSEEEEEE-SSEEE----------------EEEE--TTTEE------------EEEEEETT
T ss_pred CEEEEEcCCCeEEEEECCcccEEEEEecCCCcc----------------eEEEcCCCCEE------------EEEecCCC
Confidence 899999999999999999998776665543322 78999999998 5554 678
Q ss_pred cEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccC
Q 010206 206 SLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLT 283 (515)
Q Consensus 206 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 283 (515)
.+.++| ..+.+.................++..+..+|....++.. +.+.|.+.|....+.... ......
T Consensus 101 ~v~v~D--~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~-------~~i~~g 171 (369)
T PF02239_consen 101 TVSVID--AETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV-------TTIKVG 171 (369)
T ss_dssp EEEEEE--TTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE-------EEEE--
T ss_pred ceeEec--cccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce-------eeeccc
Confidence 999888 333322111000000001134577888888988866665 568888888776543321 112234
Q ss_pred CceEEEEEecCCCcEEE-EEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE-------EEc--cC
Q 010206 284 EVITSAEFHPTHCNMLA-YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI-------KFA--RN 353 (515)
Q Consensus 284 ~~i~~i~~~p~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------~~s--~~ 353 (515)
.......|+|++ ++++ ....+..|-++|..+++... .++.... .|..++..+ .|. ..
T Consensus 172 ~~~~D~~~dpdg-ry~~va~~~sn~i~viD~~~~k~v~----~i~~g~~--------p~~~~~~~~php~~g~vw~~~~~ 238 (369)
T PF02239_consen 172 RFPHDGGFDPDG-RYFLVAANGSNKIAVIDTKTGKLVA----LIDTGKK--------PHPGPGANFPHPGFGPVWATSGL 238 (369)
T ss_dssp TTEEEEEE-TTS-SEEEEEEGGGTEEEEEETTTTEEEE----EEE-SSS--------BEETTEEEEEETTTEEEEEEEBS
T ss_pred ccccccccCccc-ceeeecccccceeEEEeeccceEEE----Eeecccc--------ccccccccccCCCcceEEeeccc
Confidence 456788999999 5554 45567899999998876532 1221111 111222221 121 12
Q ss_pred CCEEEE-EcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEe----cCCCcEEEEec
Q 010206 354 GRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG----SYSNLFRVFGC 428 (515)
Q Consensus 354 ~~~l~s-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~----s~dg~i~iw~~ 428 (515)
+...++ -+...+.+||... .+.++++...... ..+..+|++++|... ...+.|.++|.
T Consensus 239 ~~~~~~~ig~~~v~v~d~~~-wkvv~~I~~~G~g----------------lFi~thP~s~~vwvd~~~~~~~~~v~viD~ 301 (369)
T PF02239_consen 239 GYFAIPLIGTDPVSVHDDYA-WKVVKTIPTQGGG----------------LFIKTHPDSRYVWVDTFLNPDADTVQVIDK 301 (369)
T ss_dssp SSSEEEEEE--TTT-STTTB-TSEEEEEE-SSSS------------------EE--TT-SEEEEE-TT-SSHT-EEEEEC
T ss_pred cceecccccCCccccchhhc-CeEEEEEECCCCc----------------ceeecCCCCccEEeeccCCCCCceEEEEEC
Confidence 333322 1223445677665 6777777765433 168889999999987 45689999999
Q ss_pred CCCCcceeeec-cCCCceeeEEECCCCCeeEeecCCC--eEEEecCC
Q 010206 429 SEGSAESTTLE-ASKNPMRRQVQTPSRPSRPLGSLSG--VVRRVKGA 472 (515)
Q Consensus 429 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~--~v~l~~~~ 472 (515)
++. ....++. .....+..+.|+++|+.+..+.+++ .|.+++..
T Consensus 302 ~tl-~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~ 347 (369)
T PF02239_consen 302 KTL-KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAK 347 (369)
T ss_dssp CGT-EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETT
T ss_pred cCc-ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECC
Confidence 976 3334443 2233578999999999765555543 57775444
No 223
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.57 E-value=2.3e-13 Score=113.54 Aligned_cols=148 Identities=19% Similarity=0.340 Sum_probs=102.3
Q ss_pred EEEEecCCCCEEEEe-C---C-------CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEE--Eec
Q 010206 238 NSISNNSDGETFISA-D---D-------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY--SSS 304 (515)
Q Consensus 238 ~~~~~~~~~~~l~s~-~---d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~--~~~ 304 (515)
..+.|+++|..|+.- . | +...+|.++........+ .+. ..++|.+++|+|++ +.|++ |..
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i-----~l~-~~~~I~~~~WsP~g-~~favi~g~~ 81 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESI-----ELK-KEGPIHDVAWSPNG-NEFAVIYGSM 81 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCcccee-----ecc-CCCceEEEEECcCC-CEEEEEEccC
Confidence 367899999988763 2 1 345666664444333322 111 24569999999999 55543 446
Q ss_pred CCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc---C-CeEEEEEeeCCCCCeeeE
Q 010206 305 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD---Y-MTLKLWDINMDSGPVATF 380 (515)
Q Consensus 305 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~---~-~~i~iwd~~~~~~~~~~~ 380 (515)
++.|.+||++... +..+. ...+..+.|+|+|++|+.++ - |.|.+||.+. .+.+...
T Consensus 82 ~~~v~lyd~~~~~-----i~~~~--------------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-~~~i~~~ 141 (194)
T PF08662_consen 82 PAKVTLYDVKGKK-----IFSFG--------------TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-KKKISTF 141 (194)
T ss_pred CcccEEEcCcccE-----eEeec--------------CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-CEEeecc
Confidence 7899999996322 12221 24678899999999999864 2 7899999985 5555554
Q ss_pred eeeccccccccccccCCCccceeeEEEcCCCCEEEEecC------CCcEEEEecC
Q 010206 381 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY------SNLFRVFGCS 429 (515)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~------dg~i~iw~~~ 429 (515)
.... ++.++|+|||++|++++. |+.++||+..
T Consensus 142 ~~~~-----------------~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 142 EHSD-----------------ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred ccCc-----------------EEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 3222 348999999999998764 7899999986
No 224
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=1.5e-12 Score=117.76 Aligned_cols=164 Identities=17% Similarity=0.259 Sum_probs=122.8
Q ss_pred CcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCC-----ceEEEEEecCCCcEEEEEecCC
Q 010206 233 HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTE-----VITSAEFHPTHCNMLAYSSSKG 306 (515)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-----~i~~i~~~p~~~~~l~~~~~dg 306 (515)
....++++..++-..+|++| .+|.|..||.++...... ++... ....|.+ .|+++.|+.+| -.+++|+.+|
T Consensus 174 ~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~-l~~~~-~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G 250 (703)
T KOG2321|consen 174 DSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGT-LDAAS-SVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTG 250 (703)
T ss_pred ccccceeeeecCccceEEecccCceEEEecchhhhhhee-eeccc-ccCCCccccccCcceEEEecCCc-eeEEeeccCC
Confidence 44789999999999999999 799999999987654432 22111 2233333 49999999998 8999999999
Q ss_pred eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccC--CCEEEEEcCCeEEEEEeeCCCCCeeeEeeec
Q 010206 307 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN--GRHILSRDYMTLKLWDINMDSGPVATFQVHE 384 (515)
Q Consensus 307 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~ 384 (515)
.+.|||+++.+.....- .+..-+|..+.|.+. +..+++.+...++|||-.+ +++...+....
T Consensus 251 ~v~iyDLRa~~pl~~kd---------------h~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~-Gk~~asiEpt~ 314 (703)
T KOG2321|consen 251 SVLIYDLRASKPLLVKD---------------HGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECT-GKPMASIEPTS 314 (703)
T ss_pred cEEEEEcccCCceeecc---------------cCCccceeeecccccCCCceEEecchHHhhhccccc-CCceeeccccC
Confidence 99999999876532111 112257889999774 5677777779999999987 77766654332
Q ss_pred cccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCC
Q 010206 385 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
. +..+|+-|++.+++++-.++.+..|=+..-
T Consensus 315 ~----------------lND~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 315 D----------------LNDFCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred C----------------cCceeeecCCceEEEecCCCcceeEEcccc
Confidence 2 337899999999999999998888776654
No 225
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=5.2e-13 Score=127.07 Aligned_cols=217 Identities=14% Similarity=0.134 Sum_probs=134.4
Q ss_pred ccCcCCeEEEEecCCCCEEEEe--C--CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEE-EEecC
Q 010206 231 HAHDYHINSISNNSDGETFISA--D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSK 305 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~s~--~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~-~~~~d 305 (515)
..+...+.+.+|+||++.|+.. . ...|.+||+.+++.. .+....+.+...+|+||| +.|+ +.+.+
T Consensus 192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~---------~l~~~~g~~~~~~~SPDG-~~la~~~~~~ 261 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR---------VVANFKGSNSAPAWSPDG-RTLAVALSRD 261 (427)
T ss_pred ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE---------EeecCCCCccceEECCCC-CEEEEEEccC
Confidence 3566778899999999998875 2 346999999876532 122233455688999999 5554 56778
Q ss_pred CeEEEEecC--cccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--CeEEEEEeeCCCCCeeeEe
Q 010206 306 GSIRLIDMR--QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQ 381 (515)
Q Consensus 306 g~i~~wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~~~~~~~~~~ 381 (515)
+...+|.+. .+.. .. +..+........|+|||+.|+..++ +...||.+...+.....+.
T Consensus 262 g~~~Iy~~d~~~~~~-----~~------------lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt 324 (427)
T PRK02889 262 GNSQIYTVNADGSGL-----RR------------LTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT 324 (427)
T ss_pred CCceEEEEECCCCCc-----EE------------CCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe
Confidence 876776553 3321 11 1222234566789999998886543 6777777654333333332
Q ss_pred eeccccccccccccCCCccceeeEEEcCCCCEEEEecCCC---cEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeE
Q 010206 382 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP 458 (515)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg---~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 458 (515)
..... ....+|+|||++|+..+.++ .|.+||+.++... .+... .......|+|+++.|+
T Consensus 325 ~~g~~---------------~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~--~lt~~-~~~~~p~~spdg~~l~ 386 (427)
T PRK02889 325 FTGSY---------------NTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT--ALTDT-TRDESPSFAPNGRYIL 386 (427)
T ss_pred cCCCC---------------cCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE--EccCC-CCccCceECCCCCEEE
Confidence 22111 12578999999998776554 6999999877433 22222 2345789999999988
Q ss_pred eecCCCe-EEE----ecCCCCCccccCCccccccCCeeEEEEcCC
Q 010206 459 LGSLSGV-VRR----VKGADNSALDANGNAFDFSMKLLHLAWHPS 498 (515)
Q Consensus 459 s~~~d~~-v~l----~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 498 (515)
..+.++. -.+ .++.... ....+.+.+...+|+|-
T Consensus 387 ~~~~~~g~~~l~~~~~~g~~~~------~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 387 YATQQGGRSVLAAVSSDGRIKQ------RLSVQGGDVREPSWGPF 425 (427)
T ss_pred EEEecCCCEEEEEEECCCCceE------EeecCCCCCCCCccCCC
Confidence 8776542 222 2222111 11123566788888874
No 226
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.56 E-value=1.5e-13 Score=122.99 Aligned_cols=189 Identities=13% Similarity=0.166 Sum_probs=129.6
Q ss_pred cCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccc-
Q 010206 243 NSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD- 320 (515)
Q Consensus 243 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~- 320 (515)
.+.+--++.| .-|.|.+.|.... ...++++. ...-.+..++++.|-|.+..+|+.+..+|.+.+||........
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~-~~sklfne---~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~ 257 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINF-EVSKLFNE---ERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATA 257 (636)
T ss_pred CCCCcceEEeeccCceEEecchhh-HHHHhhhh---cccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCC
Confidence 3566677788 8899999988752 22121111 1111357899999999877889999999999999874321000
Q ss_pred ---cc---ccee-----eeccCCCccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccc
Q 010206 321 ---TH---SKLF-----EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRP 388 (515)
Q Consensus 321 ---~~---~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~ 388 (515)
.. ...| ..+....+...+.--.+.|...+|+|||++||+-+ ||.++|||+.+ .+++..++.--+
T Consensus 258 p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt-~eLlg~mkSYFG--- 333 (636)
T KOG2394|consen 258 PSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDT-QELLGVMKSYFG--- 333 (636)
T ss_pred CcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccH-HHHHHHHHhhcc---
Confidence 00 0011 11111111111222345899999999999999966 59999999986 444443322111
Q ss_pred cccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECC
Q 010206 389 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTP 452 (515)
Q Consensus 389 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~ 452 (515)
...+++|||||+||++|++|-.|.||.+..+ .++..-++|.+.|..++|.|
T Consensus 334 ------------GLLCvcWSPDGKyIvtGGEDDLVtVwSf~er-RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 334 ------------GLLCVCWSPDGKYIVTGGEDDLVTVWSFEER-RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ------------ceEEEEEcCCccEEEecCCcceEEEEEeccc-eEEEeccccccceeeEeecc
Confidence 1349999999999999999999999999976 56678899999999999987
No 227
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=1e-12 Score=125.60 Aligned_cols=215 Identities=16% Similarity=0.181 Sum_probs=131.4
Q ss_pred ccCcCCeEEEEecCCCCEEEEe--C--CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCC
Q 010206 231 HAHDYHINSISNNSDGETFISA--D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG 306 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~s~--~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg 306 (515)
..+...+.+.+|+||++.|+.. . +..|.+||+.+++.. .+....+...+++|+|+|..++++.+.+|
T Consensus 200 t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~---------~l~~~~g~~~~~~~SpDG~~l~~~~s~~g 270 (433)
T PRK04922 200 LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE---------LVASFRGINGAPSFSPDGRRLALTLSRDG 270 (433)
T ss_pred ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE---------EeccCCCCccCceECCCCCEEEEEEeCCC
Confidence 4556778899999999998875 2 346999999765432 12223344457899999943444555555
Q ss_pred --eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--Ce--EEEEEeeCCCCCeeeE
Q 010206 307 --SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MT--LKLWDINMDSGPVATF 380 (515)
Q Consensus 307 --~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~~--i~iwd~~~~~~~~~~~ 380 (515)
.|.+||+.+++... +..+.......+|+|||+.|+..++ +. |.++|+.. + ....+
T Consensus 271 ~~~Iy~~d~~~g~~~~-----------------lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~-g-~~~~l 331 (433)
T PRK04922 271 NPEIYVMDLGSRQLTR-----------------LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG-G-SAERL 331 (433)
T ss_pred CceEEEEECCCCCeEE-----------------CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-C-CeEEe
Confidence 58999998765311 1122233467899999999887653 44 55555543 2 23333
Q ss_pred eeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCC---cEEEEecCCCCcceeeeccCCCceeeEEECCCCCee
Q 010206 381 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSR 457 (515)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg---~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 457 (515)
..+... ....+|+|||++|+..+.++ .|.+||+.++... .+. +........|+|+|+++
T Consensus 332 t~~g~~---------------~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~--~Lt-~~~~~~~p~~spdG~~i 393 (433)
T PRK04922 332 TFQGNY---------------NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR--TLT-PGSLDESPSFAPNGSMV 393 (433)
T ss_pred ecCCCC---------------ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE--ECC-CCCCCCCceECCCCCEE
Confidence 222111 12689999999988665432 6899999876433 232 22234567899999988
Q ss_pred EeecCC-Ce--EEEe--cCCCCCccccCCccccccCCeeEEEEcC
Q 010206 458 PLGSLS-GV--VRRV--KGADNSALDANGNAFDFSMKLLHLAWHP 497 (515)
Q Consensus 458 ~s~~~d-~~--v~l~--~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 497 (515)
+..+.+ +. +.++ ++.... ....+.+.+..++|+|
T Consensus 394 ~~~s~~~g~~~L~~~~~~g~~~~------~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 394 LYATREGGRGVLAAVSTDGRVRQ------RLVSADGEVREPAWSP 432 (433)
T ss_pred EEEEecCCceEEEEEECCCCceE------EcccCCCCCCCCccCC
Confidence 776654 33 3332 222111 1112345677788887
No 228
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=1.3e-13 Score=122.07 Aligned_cols=296 Identities=12% Similarity=0.106 Sum_probs=193.5
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
+.|+.+.|+ ..|..|++++.|..|.+||...++.+..
T Consensus 143 GcVntV~FN--~~Gd~l~SgSDD~~vv~WdW~~~~~~l~----------------------------------------- 179 (559)
T KOG1334|consen 143 GCVNTVHFN--QRGDVLASGSDDLQVVVWDWVSGSPKLS----------------------------------------- 179 (559)
T ss_pred Cccceeeec--ccCceeeccCccceEEeehhhccCcccc-----------------------------------------
Confidence 999999994 5677999999999999999987653221
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC--CCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
|..+|...|....|-| +.+.++++ .||.+++=.+...+...
T Consensus 180 ------------------------------------f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e 223 (559)
T KOG1334|consen 180 ------------------------------------FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVE 223 (559)
T ss_pred ------------------------------------cccccccchhhhhccCCCCCcCceeccccCceeeeeecccccee
Confidence 1235555555555555 34456665 89999988775444332
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
.. ..+..|.++|+.++.-|+.+..|.+++.|+.+.-+|++.+....... ..+...+. .-....++
T Consensus 224 ~t-----~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~----cr~~~~~~------~v~L~~Ia 288 (559)
T KOG1334|consen 224 NT-----KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV----CREADEKE------RVGLYTIA 288 (559)
T ss_pred cc-----eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee----eeccCCcc------ceeeeeEe
Confidence 22 25567999999999999998999999999999999998875422211 11100000 02467888
Q ss_pred EccCCC-EEEEE-cCCeEEEEEeeCCCCC-----eeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCc
Q 010206 350 FARNGR-HILSR-DYMTLKLWDINMDSGP-----VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 422 (515)
Q Consensus 350 ~s~~~~-~l~s~-~~~~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~ 422 (515)
..|... ++++| .+..+++||.+.-.+. +..+..|.- ..+....|++++|+.++.-|.+.=.|-.
T Consensus 289 ~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl---------~~d~~v~ITgl~Ysh~~sElLaSYnDe~ 359 (559)
T KOG1334|consen 289 VDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHL---------VEDDPVNITGLVYSHDGSELLASYNDED 359 (559)
T ss_pred cCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccc---------cccCcccceeEEecCCccceeeeecccc
Confidence 888555 55665 4589999998752111 222221111 0133344789999977665555556778
Q ss_pred EEEEecCCCC------------cceeeeccCCCc--eeeEE-ECCCCCeeEeecCCCeEEEecCCCCCccccCCcccccc
Q 010206 423 FRVFGCSEGS------------AESTTLEASKNP--MRRQV-QTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFS 487 (515)
Q Consensus 423 i~iw~~~~~~------------~~~~~~~~~~~~--v~~~~-~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~ 487 (515)
|+++.-.-+. ...+.+++|.+. |..+- |-|...|++|||..|.|.+ |+....++....-+-.
T Consensus 360 IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFi---W~K~t~eii~~MegDr 436 (559)
T KOG1334|consen 360 IYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFI---WDKKTGEIIRFMEGDR 436 (559)
T ss_pred eEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEE---EecchhHHHHHhhccc
Confidence 8998543221 112347788654 44454 4688899999999999999 3222212211111123
Q ss_pred CCeeEEEEcCCCCEEEEEc-CCcEEEEe
Q 010206 488 MKLLHLAWHPSENSIACAA-SNSLYMYY 514 (515)
Q Consensus 488 ~~i~~~~~s~~~~~la~~~-~~~~~i~~ 514 (515)
..|+++.=+|--..||+++ +..+.||.
T Consensus 437 ~VVNCLEpHP~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 437 HVVNCLEPHPHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred ceEeccCCCCCCchhhccCCccceeeec
Confidence 3789999999999999776 55699996
No 229
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=4e-12 Score=121.71 Aligned_cols=185 Identities=12% Similarity=0.079 Sum_probs=121.2
Q ss_pred cCcCCeEEEEecCCCCEEEEe----CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCe
Q 010206 232 AHDYHINSISNNSDGETFISA----DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 307 (515)
Q Consensus 232 ~~~~~v~~~~~~~~~~~l~s~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~ 307 (515)
.|...+.+.+|+|||+.|+.. .+..|.+||+.++... .+..+.+.+...+|+|||..++++.+.++.
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~---------~l~~~~g~~~~~~~SPDG~~la~~~~~~g~ 269 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE---------LVGNFPGMTFAPRFSPDGRKVVMSLSQGGN 269 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE---------EeecCCCcccCcEECCCCCEEEEEEecCCC
Confidence 455678899999999988875 2578999999866532 233355667788999999434456666655
Q ss_pred --EEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--C--eEEEEEeeCCCCCeeeEe
Q 010206 308 --IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--M--TLKLWDINMDSGPVATFQ 381 (515)
Q Consensus 308 --i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~--~i~iwd~~~~~~~~~~~~ 381 (515)
|.+||+.++... . +..+........|+|||+.|+..++ + .|+++|+. +.....+.
T Consensus 270 ~~Iy~~d~~~~~~~-----~------------Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~--g~~~~~lt 330 (435)
T PRK05137 270 TDIYTMDLRSGTTT-----R------------LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD--GSNPRRIS 330 (435)
T ss_pred ceEEEEECCCCceE-----E------------ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECC--CCCeEEee
Confidence 677788766431 1 1222244567899999998887553 3 67777765 33344443
Q ss_pred eeccccccccccccCCCccceeeEEEcCCCCEEEEecCC---CcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeE
Q 010206 382 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP 458 (515)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d---g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 458 (515)
..... +....|+|||++|+..+.+ ..|.+||+..+... .+.. ...+....|+|+|+.|+
T Consensus 331 ~~~~~---------------~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~--~lt~-~~~~~~p~~spDG~~i~ 392 (435)
T PRK05137 331 FGGGR---------------YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER--ILTS-GFLVEGPTWAPNGRVIM 392 (435)
T ss_pred cCCCc---------------ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE--eccC-CCCCCCCeECCCCCEEE
Confidence 22211 1267899999999876543 36888888654322 2221 22466789999999887
Q ss_pred eecC
Q 010206 459 LGSL 462 (515)
Q Consensus 459 s~~~ 462 (515)
..+.
T Consensus 393 ~~~~ 396 (435)
T PRK05137 393 FFRQ 396 (435)
T ss_pred EEEc
Confidence 6554
No 230
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=5.5e-11 Score=107.68 Aligned_cols=312 Identities=11% Similarity=0.127 Sum_probs=179.8
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccce
Q 010206 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (515)
Q Consensus 35 ~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (515)
..+.+..++|++|+++|.+. +..++|++....... . .... ..
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~---l-------------------t~~~---------------~~ 75 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVV---L-------------------CVEL---------------KK 75 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEE---E-------------------Eecc---------------ce
Confidence 45578899999999999875 558999998776421 1 1011 12
Q ss_pred eEEEEEeecCCCcEEEee-----e-----CCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCC
Q 010206 115 INKIRWCQSANSALYLLS-----T-----NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (515)
Q Consensus 115 v~~l~~~~~~~~~~l~~~-----~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~ 184 (515)
+.++.|+| -+.+|.+- . ..-.+++|+++++.......... +.+ + .+.|++|..
T Consensus 76 ~~~L~fSP--~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~------Q~~--W-------~~qfs~dEs 138 (566)
T KOG2315|consen 76 TYDLLFSP--KGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKM------QNG--W-------VPQFSIDES 138 (566)
T ss_pred eeeeeecc--cccccccccccccccCCCCCCCceeeeeeccceehhheehhh------hcC--c-------ccccccchh
Confidence 55555533 23344331 1 13457799998854332222111 011 1 456666665
Q ss_pred ccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC--CCEEEEe---C---CCc
Q 010206 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA---D---DLR 256 (515)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~---~---d~~ 256 (515)
. +.--..+.+.+|+ ..+..+ ....-|...|..+.++|. ...+++= . -..
T Consensus 139 l-------------~arlv~nev~f~~--~~~f~~--------~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~ 195 (566)
T KOG2315|consen 139 L-------------AARLVSNEVQFYD--LGSFKT--------IQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPAS 195 (566)
T ss_pred h-------------hhhhhcceEEEEe--cCCccc--------eeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcE
Confidence 4 3334556788887 333111 111346688999999886 3345441 2 357
Q ss_pred EEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEec--C---------CeEEEEecCcccccccccce
Q 010206 257 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS--K---------GSIRLIDMRQSALCDTHSKL 325 (515)
Q Consensus 257 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~--d---------g~i~~wd~~~~~~~~~~~~~ 325 (515)
|+||........ ..+.. .++ ....=..+.|++-|..+|+..+. | .++++.++..... .
T Consensus 196 vri~~~~~~~~~-~~~a~--ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~------~ 264 (566)
T KOG2315|consen 196 VRIYKYPEEGQH-QPVAN--KSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV------S 264 (566)
T ss_pred EEEecccccccc-chhhh--ccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceE------E
Confidence 999987632211 11100 011 12223467788776445554443 2 2466666652211 1
Q ss_pred eeeccCCCccccccccccceeEEEEccCCCEEEEE-c-C-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccce
Q 010206 326 FEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-D-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 402 (515)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 402 (515)
+... ..++|.++.|+|+++.+++. + - ..+.|||++ +.++..+... ..+
T Consensus 265 V~L~-----------k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df~eg--pRN-------------- 315 (566)
T KOG2315|consen 265 VPLL-----------KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDFPEG--PRN-------------- 315 (566)
T ss_pred EecC-----------CCCCceEEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeCCCC--Ccc--------------
Confidence 1111 13799999999999888874 3 3 899999998 6776666432 222
Q ss_pred eeEEEcCCCCEEEEecC---CCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 403 FECCLSGDGGRVATGSY---SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 403 ~~~~~s~~~~~l~s~s~---dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.+-|+|.|++|+.++- -|.+-|||+.+. +++..++.... +-..|+|||++++++...=.+|+
T Consensus 316 -~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~-K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrv 380 (566)
T KOG2315|consen 316 -TAFFNPHGNIILLAGFGNLPGDMEVWDVPNR-KLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRV 380 (566)
T ss_pred -ceEECCCCCEEEEeecCCCCCceEEEeccch-hhccccccCCc--eEEEEcCCCcEEEEEeccccEEe
Confidence 7899999999987764 478999999985 34334433222 34566666666666654444444
No 231
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.51 E-value=1e-11 Score=114.45 Aligned_cols=325 Identities=11% Similarity=0.056 Sum_probs=177.5
Q ss_pred cEEEe-eeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcc
Q 010206 127 ALYLL-STNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (515)
Q Consensus 127 ~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 205 (515)
+++++ -..++.|.+.|..+.+........... ...+.++|||+++ ++.+.+|
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~---------------h~~~~~s~Dgr~~------------yv~~rdg 58 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAP---------------HAGLKFSPDGRYL------------YVANRDG 58 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTE---------------EEEEE-TT-SSEE------------EEEETTS
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCc---------------eeEEEecCCCCEE------------EEEcCCC
Confidence 35544 467899999999998877665543211 0156789999998 7778899
Q ss_pred cEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccC
Q 010206 206 SLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLT 283 (515)
Q Consensus 206 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 283 (515)
.+.++| +...+. .... .-.....++++++||++++++ ..+.+.++|.++.+....+- ..........
T Consensus 59 ~vsviD--~~~~~~------v~~i--~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~-~~~~~~~~~~ 127 (369)
T PF02239_consen 59 TVSVID--LATGKV------VATI--KVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP-TGGMPVDGPE 127 (369)
T ss_dssp EEEEEE--TTSSSE------EEEE--E-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE---EE-TTTS-
T ss_pred eEEEEE--CCcccE------EEEE--ecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecc-cccccccccC
Confidence 999999 444332 2221 122456789999999999987 69999999998876554331 1000111134
Q ss_pred CceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-C
Q 010206 284 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y 362 (515)
Q Consensus 284 ~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~ 362 (515)
..+..+..+|..+.+++.--..+.|.+-|....+... ...++. ........|+|++++++.+. .
T Consensus 128 ~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~--~~~i~~-------------g~~~~D~~~dpdgry~~va~~~ 192 (369)
T PF02239_consen 128 SRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK--VTTIKV-------------GRFPHDGGFDPDGRYFLVAANG 192 (369)
T ss_dssp --EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE--EEEEE---------------TTEEEEEE-TTSSEEEEEEGG
T ss_pred CCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc--eeeecc-------------cccccccccCcccceeeecccc
Confidence 5678888888873344444445888888876643211 111111 13466789999999988753 3
Q ss_pred -CeEEEEEeeCCCCCeeeEeeecc-ccccccccccCCCccceeeEEE--cCCCCEEEEecCCCcEEEEecCCCCcceeee
Q 010206 363 -MTLKLWDINMDSGPVATFQVHEH-LRPKLCDLYENDSIFDKFECCL--SGDGGRVATGSYSNLFRVFGCSEGSAESTTL 438 (515)
Q Consensus 363 -~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~ 438 (515)
+.|-++|..+ ++.+..+..... .......+.+... ...| ...+...++.-....+.+||..+. +....+
T Consensus 193 sn~i~viD~~~-~k~v~~i~~g~~p~~~~~~~~php~~-----g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w-kvv~~I 265 (369)
T PF02239_consen 193 SNKIAVIDTKT-GKLVALIDTGKKPHPGPGANFPHPGF-----GPVWATSGLGYFAIPLIGTDPVSVHDDYAW-KVVKTI 265 (369)
T ss_dssp GTEEEEEETTT-TEEEEEEE-SSSBEETTEEEEEETTT-----EEEEEEEBSSSSEEEEEE--TTT-STTTBT-SEEEEE
T ss_pred cceeEEEeecc-ceEEEEeeccccccccccccccCCCc-----ceEEeeccccceecccccCCccccchhhcC-eEEEEE
Confidence 8999999885 544444322111 0111111111110 1122 223333333323345667888876 455677
Q ss_pred ccCCCceeeEEECCCCCeeEee----cCCCeEEEecCCCCCccccCCcc-ccccCCeeEEEEcCCCCEEEEEc--CC-cE
Q 010206 439 EASKNPMRRQVQTPSRPSRPLG----SLSGVVRRVKGADNSALDANGNA-FDFSMKLLHLAWHPSENSIACAA--SN-SL 510 (515)
Q Consensus 439 ~~~~~~v~~~~~~~~~~~l~s~----~~d~~v~l~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~la~~~--~~-~~ 510 (515)
+....+ --+..+|+++++... ...++|.+++...+. ..... ......+.++.|++||+.+.++. .+ .+
T Consensus 266 ~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~---~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i 341 (369)
T PF02239_consen 266 PTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK---VVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAI 341 (369)
T ss_dssp E-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE---EEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEE
T ss_pred ECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcc---eeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEE
Confidence 776666 677889999999887 445788886555442 11111 11223599999999999877654 44 68
Q ss_pred EEEeC
Q 010206 511 YMYYA 515 (515)
Q Consensus 511 ~i~~~ 515 (515)
.+|++
T Consensus 342 ~v~D~ 346 (369)
T PF02239_consen 342 VVYDA 346 (369)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 88864
No 232
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.50 E-value=1.5e-12 Score=116.75 Aligned_cols=237 Identities=16% Similarity=0.150 Sum_probs=147.0
Q ss_pred eEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEE-----ecCCCcEEEEEecCCeEEEE
Q 010206 237 INSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF-----HPTHCNMLAYSSSKGSIRLI 311 (515)
Q Consensus 237 v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~-----~p~~~~~l~~~~~dg~i~~w 311 (515)
+.....+-.|..|+..-...+++|+.+.......-++. ..+.+ ....|=+| .|.+ --++.|-.-|.+.+.
T Consensus 126 ~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k--~~y~g--t~P~cHdfn~~~a~~~g-~dllIGf~tGqvq~i 200 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDK--REYKG--TSPTCHDFNSFTATPKG-LDLLIGFTTGQVQLI 200 (636)
T ss_pred eeeccccCCCCEEEEecCCeEEEEEccCcchhccchhh--hcccC--CCCceecccccccCCCC-cceEEeeccCceEEe
Confidence 44555556778888776667889988743322211111 01111 11222233 3455 556778888999999
Q ss_pred ecCcccccccccceeeeccCCCccccccccccceeEEEEccCC--CEEEEEcCCeEEEEEeeCCC----------CCeee
Q 010206 312 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG--RHILSRDYMTLKLWDINMDS----------GPVAT 379 (515)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~s~~~~~i~iwd~~~~~----------~~~~~ 379 (515)
|....+. .+.|...... ....++++.|-|.+ .+|++-..|.+++||..... +.-..
T Consensus 201 dp~~~~~----sklfne~r~i--------~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~ 268 (636)
T KOG2394|consen 201 DPINFEV----SKLFNEERLI--------NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQ 268 (636)
T ss_pred cchhhHH----HHhhhhcccc--------cccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCe
Confidence 8876322 1222221110 12579999999844 34444345899999864210 00011
Q ss_pred Eeeec-----cccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCC
Q 010206 380 FQVHE-----HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR 454 (515)
Q Consensus 380 ~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 454 (515)
+..+. ...+..+...... .|...+|+|||++||+.+.||.+||||..+. .++..++.......+++|+|||
T Consensus 269 f~i~t~ksk~~rNPv~~w~~~~g---~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~-eLlg~mkSYFGGLLCvcWSPDG 344 (636)
T KOG2394|consen 269 FAILTSKSKKTRNPVARWHIGEG---SINEFAFSPDGKYLATVSQDGFLRIFDFDTQ-ELLGVMKSYFGGLLCVCWSPDG 344 (636)
T ss_pred eEEeeeeccccCCccceeEeccc---cccceeEcCCCceEEEEecCceEEEeeccHH-HHHHHHHhhccceEEEEEcCCc
Confidence 11111 1011111111122 3458999999999999999999999999875 5556777778888999999999
Q ss_pred CeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcC
Q 010206 455 PSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHP 497 (515)
Q Consensus 455 ~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 497 (515)
+++++|++|.-|.+ |......+...-.+|+..|..++|.|
T Consensus 345 KyIvtGGEDDLVtV---wSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 345 KYIVTGGEDDLVTV---WSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cEEEecCCcceEEE---EEeccceEEEeccccccceeeEeecc
Confidence 99999999999999 33333234445567999999999995
No 233
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=4.3e-10 Score=96.95 Aligned_cols=206 Identities=17% Similarity=0.157 Sum_probs=138.5
Q ss_pred EEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCc----------eEEEEEecCCCcEEEEEec-
Q 010206 238 NSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV----------ITSAEFHPTHCNMLAYSSS- 304 (515)
Q Consensus 238 ~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----------i~~i~~~p~~~~~l~~~~~- 304 (515)
..+++++++++++++ ..|.|.++-++....+...+ .+..|.+. +....+.|++ ++|++.+-
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v-----~~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG 165 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVV-----QVVKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLG 165 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccce-----eeeecCCCCCCccccCCccceeeeCCCC-CEEEEeecC
Confidence 778999999999998 68999999997654443332 12223333 7899999999 77776654
Q ss_pred CCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--CeEEEEEeeCCCCCeeeEee
Q 010206 305 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQV 382 (515)
Q Consensus 305 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~~~~~~~~~~~ 382 (515)
-..|.+|++..+.+.......+. . ...-+-|.|+|++++.....+ ++|.+|........+..++.
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~--~-----------G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~ 232 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVK--P-----------GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQT 232 (346)
T ss_pred CceEEEEEcccCccccccccccC--C-----------CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeee
Confidence 45799999998776443222221 1 145678999999999998765 99999999864455555554
Q ss_pred eccccccccccccCCCccceeeEEEcCCCCEEEEec-CCCcEEEEecCCCCccee---eeccCCCceeeEEECCCCCeeE
Q 010206 383 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAEST---TLEASKNPMRRQVQTPSRPSRP 458 (515)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s-~dg~i~iw~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~ 458 (515)
+...... +..+. ..-.+.+++||++|.++. ....|-+|.+...+..+. ....+....+...+.+++++|+
T Consensus 233 i~tlP~d----F~g~~--~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Li 306 (346)
T COG2706 233 IDTLPED----FTGTN--WAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLI 306 (346)
T ss_pred eccCccc----cCCCC--ceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEE
Confidence 4332211 11111 123788999999998765 344788888865533322 2223444467889999999998
Q ss_pred eecCCC-eEEE
Q 010206 459 LGSLSG-VVRR 468 (515)
Q Consensus 459 s~~~d~-~v~l 468 (515)
.+..++ .+.+
T Consensus 307 aa~q~sd~i~v 317 (346)
T COG2706 307 AANQKSDNITV 317 (346)
T ss_pred EEccCCCcEEE
Confidence 887764 4554
No 234
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=6.4e-12 Score=120.12 Aligned_cols=168 Identities=13% Similarity=0.171 Sum_probs=100.5
Q ss_pred EEEEecCCCCEEEEe--CC--CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEe-cCCe--EEE
Q 010206 238 NSISNNSDGETFISA--DD--LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGS--IRL 310 (515)
Q Consensus 238 ~~~~~~~~~~~l~s~--~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg~--i~~ 310 (515)
.+..|+|||+.|+.. .+ ..|++||+.+++.. .+..+.......+|+||+ +.|+..+ .+|. |.+
T Consensus 251 ~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~---------~lt~~~~~~~~~~~spDG-~~l~f~sd~~g~~~iy~ 320 (433)
T PRK04922 251 GAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT---------RLTNHFGIDTEPTWAPDG-KSIYFTSDRGGRPQIYR 320 (433)
T ss_pred cCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE---------ECccCCCCccceEECCCC-CEEEEEECCCCCceEEE
Confidence 356889999877643 33 36999999865422 233344455678999999 6666555 4454 555
Q ss_pred EecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-C---CeEEEEEeeCCCCCeeeEeeeccc
Q 010206 311 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHEHL 386 (515)
Q Consensus 311 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~---~~i~iwd~~~~~~~~~~~~~~~~~ 386 (515)
+|+.+++.. .+. + +.......+|+|||++|+..+ + ..|.+||+.. ++.. .+. +...
T Consensus 321 ~dl~~g~~~-----~lt----------~--~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~-g~~~-~Lt-~~~~ 380 (433)
T PRK04922 321 VAASGGSAE-----RLT----------F--QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST-GSVR-TLT-PGSL 380 (433)
T ss_pred EECCCCCeE-----Eee----------c--CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCC-CCeE-ECC-CCCC
Confidence 566554321 110 0 012244689999999998743 2 3689999874 4332 332 1111
Q ss_pred cccccccccCCCccceeeEEEcCCCCEEEEecCC---CcEEEEecCCCCcceeeeccCCCceeeEEECC
Q 010206 387 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTP 452 (515)
Q Consensus 387 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d---g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~ 452 (515)
.....|+|||++|+..+.+ +.|+++++..+ ....+..+...+...+|+|
T Consensus 381 ---------------~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~--~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 381 ---------------DESPSFAPNGSMVLYATREGGRGVLAAVSTDGR--VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ---------------CCCceECCCCCEEEEEEecCCceEEEEEECCCC--ceEEcccCCCCCCCCccCC
Confidence 1257899999988766543 35777777533 3344444444555555654
No 235
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1.2e-11 Score=117.73 Aligned_cols=172 Identities=12% Similarity=0.179 Sum_probs=98.4
Q ss_pred eEEEEecCCCCEEEE-e-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEe-cCCeEEEEec
Q 010206 237 INSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDM 313 (515)
Q Consensus 237 v~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg~i~~wd~ 313 (515)
+.+..|+|||+.|+. . .++...+|.++....... .+..+........|+||| +.|+..+ .++...+|.+
T Consensus 242 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-------~lt~~~~~~~~~~wSpDG-~~l~f~s~~~g~~~Iy~~ 313 (427)
T PRK02889 242 NSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLR-------RLTQSSGIDTEPFFSPDG-RSIYFTSDRGGAPQIYRM 313 (427)
T ss_pred ccceEECCCCCEEEEEEccCCCceEEEEECCCCCcE-------ECCCCCCCCcCeEEcCCC-CEEEEEecCCCCcEEEEE
Confidence 346789999988875 3 577666665432211111 233344455678899999 6665444 4566677765
Q ss_pred C--cccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC----CeEEEEEeeCCCCCeeeEeeecccc
Q 010206 314 R--QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY----MTLKLWDINMDSGPVATFQVHEHLR 387 (515)
Q Consensus 314 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~----~~i~iwd~~~~~~~~~~~~~~~~~~ 387 (515)
. ++.. ..+. +.+ .......|||||++|+..+. ..|.+||+.. ++. ..+.... .
T Consensus 314 ~~~~g~~-----~~lt----------~~g--~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~-g~~-~~lt~~~-~- 372 (427)
T PRK02889 314 PASGGAA-----QRVT----------FTG--SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT-GQV-TALTDTT-R- 372 (427)
T ss_pred ECCCCce-----EEEe----------cCC--CCcCceEECCCCCEEEEEEccCCcEEEEEEECCC-CCe-EEccCCC-C-
Confidence 3 3221 0000 000 12345789999999987542 2699999875 432 2332111 1
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEecCCC---cEEEEecCCCCcceeeeccCCCceeeEEECCC
Q 010206 388 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCSEGSAESTTLEASKNPMRRQVQTPS 453 (515)
Q Consensus 388 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg---~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~ 453 (515)
.....|+|||++|+..+.++ .+++.++. + .....+..+...+...+|+|-
T Consensus 373 --------------~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g-~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 373 --------------DESPSFAPNGRYILYATQQGGRSVLAAVSSD-G-RIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred --------------ccCceECCCCCEEEEEEecCCCEEEEEEECC-C-CceEEeecCCCCCCCCccCCC
Confidence 12679999999988776443 34455553 2 333445445555555666653
No 236
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=5.4e-11 Score=113.99 Aligned_cols=151 Identities=11% Similarity=0.065 Sum_probs=92.8
Q ss_pred CeEEEEecCCCCEEEEe--CCC--cEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEec-CC--eE
Q 010206 236 HINSISNNSDGETFISA--DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KG--SI 308 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~-dg--~i 308 (515)
.+...+|+|||+.|+.. .++ .|.+||+.++... .+..+........|+||+ +.|+..+. +| .|
T Consensus 247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~---------~Lt~~~~~~~~~~~spDG-~~i~f~s~~~g~~~I 316 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT---------RLTDSPAIDTSPSYSPDG-SQIVFESDRSGSPQL 316 (435)
T ss_pred cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE---------EccCCCCccCceeEcCCC-CEEEEEECCCCCCeE
Confidence 44567899999887643 344 4777788765422 333455556778999999 66665553 33 57
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-C---CeEEEEEeeCCCCCeeeEeeec
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHE 384 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~---~~i~iwd~~~~~~~~~~~~~~~ 384 (515)
.++|+..+... .+ ..+...+....|+|+|+.|+... + ..|.+||+.. .....+.. .
T Consensus 317 y~~d~~g~~~~-----~l------------t~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~--~~~~~lt~-~ 376 (435)
T PRK05137 317 YVMNADGSNPR-----RI------------SFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG--SGERILTS-G 376 (435)
T ss_pred EEEECCCCCeE-----Ee------------ecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCC--CceEeccC-C
Confidence 77787654321 11 11113456688999999998743 2 3677788753 22333321 1
Q ss_pred cccccccccccCCCccceeeEEEcCCCCEEEEecCC------CcEEEEecCCC
Q 010206 385 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS------NLFRVFGCSEG 431 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d------g~i~iw~~~~~ 431 (515)
.. +....|+|||++|+..+.+ ..++++|+..+
T Consensus 377 ~~---------------~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 377 FL---------------VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred CC---------------CCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 11 2268999999998765432 25778888654
No 237
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.46 E-value=6.3e-12 Score=104.96 Aligned_cols=98 Identities=13% Similarity=0.243 Sum_probs=68.4
Q ss_pred cceeEEEEccCCCEEEE--EcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecC
Q 010206 343 ASISDIKFARNGRHILS--RDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 419 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s--~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~ 419 (515)
++|.+++|+|+|+.++. |.. ..|.+||++ .+.+..+.... +..+.|+|+|++|++++.
T Consensus 60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~--~~~i~~~~~~~-----------------~n~i~wsP~G~~l~~~g~ 120 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK--GKKIFSFGTQP-----------------RNTISWSPDGRFLVLAGF 120 (194)
T ss_pred CceEEEEECcCCCEEEEEEccCCcccEEEcCc--ccEeEeecCCC-----------------ceEEEECCCCCEEEEEEc
Confidence 57999999999998775 333 899999996 56665554222 237999999999998874
Q ss_pred ---CCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecC
Q 010206 420 ---SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL 462 (515)
Q Consensus 420 ---dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 462 (515)
.|.|.+||+++. ..+...+ | ..+..++|+|+|++++++..
T Consensus 121 ~n~~G~l~~wd~~~~-~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 121 GNLNGDLEFWDVRKK-KKISTFE-H-SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCCCcEEEEEECCCC-EEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence 467999999955 2222222 2 23456667777776666643
No 238
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.46 E-value=7e-10 Score=102.64 Aligned_cols=291 Identities=12% Similarity=0.094 Sum_probs=167.2
Q ss_pred EEeeeCC----CeEEEEEc--cCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCC
Q 010206 129 YLLSTND----KTIKLWKV--QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPG 202 (515)
Q Consensus 129 l~~~~~d----~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~ 202 (515)
+++|+.. +.|..|++ .++++......... ..++.++++|+++.| ++..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~--------------~~Ps~l~~~~~~~~L------------Y~~~ 55 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEG--------------ENPSWLAVSPDGRRL------------YVVN 55 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEES--------------SSECCEEE-TTSSEE------------EEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCC--------------CCCceEEEEeCCCEE------------EEEE
Confidence 4555554 68999988 45555444332111 122278899999988 3333
Q ss_pred ----CcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecc--
Q 010206 203 ----GVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDV-- 274 (515)
Q Consensus 203 ----~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~-- 274 (515)
..+.|..|+ +....+... ..... .........++++|++++|+++ .+|.|.++++............
T Consensus 56 e~~~~~g~v~~~~--i~~~~g~L~--~~~~~-~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~ 130 (345)
T PF10282_consen 56 EGSGDSGGVSSYR--IDPDTGTLT--LLNSV-PSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVR 130 (345)
T ss_dssp TTSSTTTEEEEEE--EETTTTEEE--EEEEE-EESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEE
T ss_pred ccccCCCCEEEEE--ECCCcceeE--Eeeee-ccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecc
Confidence 467888887 333212111 11111 1133456789999999999998 6999999999875433322110
Q ss_pred ----cCccccccCCceEEEEEecCCCcEEEEEe-cCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 275 ----KPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 275 ----~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
.|..........+++.|+|++ +++++.. ....|.+|++............+..+. ...-+.+.
T Consensus 131 ~~g~g~~~~rq~~~h~H~v~~~pdg-~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~-----------G~GPRh~~ 198 (345)
T PF10282_consen 131 HEGSGPNPDRQEGPHPHQVVFSPDG-RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP-----------GSGPRHLA 198 (345)
T ss_dssp SEEEESSTTTTSSTCEEEEEE-TTS-SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST-----------TSSEEEEE
T ss_pred cCCCCCcccccccccceeEEECCCC-CEEEEEecCCCEEEEEEEeCCCceEEEeecccccc-----------CCCCcEEE
Confidence 011111234557899999999 6555544 456899999976542111111111111 14578899
Q ss_pred EccCCCEEEEEcC--CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEec-CCCcEEEE
Q 010206 350 FARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVF 426 (515)
Q Consensus 350 ~s~~~~~l~s~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s-~dg~i~iw 426 (515)
|+|++++++.... +.|.++++......+.....-.... .-+... .....++++|||++|+++. .++.|.+|
T Consensus 199 f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~----~~~~~~--~~~~~i~ispdg~~lyvsnr~~~sI~vf 272 (345)
T PF10282_consen 199 FSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLP----EGFTGE--NAPAEIAISPDGRFLYVSNRGSNSISVF 272 (345)
T ss_dssp E-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCE----TTSCSS--SSEEEEEE-TTSSEEEEEECTTTEEEEE
T ss_pred EcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecc----cccccc--CCceeEEEecCCCEEEEEeccCCEEEEE
Confidence 9999999988654 9999999983222222222111100 000000 0133799999999987654 67789999
Q ss_pred ecCC-CCcce--eeeccCCCceeeEEECCCCCeeEeecC-CCeEEE
Q 010206 427 GCSE-GSAES--TTLEASKNPMRRQVQTPSRPSRPLGSL-SGVVRR 468 (515)
Q Consensus 427 ~~~~-~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~v~l 468 (515)
++.. .+.+. ..+.......+.++++|+|++|+.++. ++.|.+
T Consensus 273 ~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~v 318 (345)
T PF10282_consen 273 DLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSV 318 (345)
T ss_dssp EECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred EEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEE
Confidence 9942 22232 333333455789999999999987764 456655
No 239
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=8.2e-12 Score=107.81 Aligned_cols=265 Identities=14% Similarity=0.127 Sum_probs=169.6
Q ss_pred ccccccceEEEEECCCCC--eEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccc
Q 010206 31 EVQEVDIISAIEFDKSGD--HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~--~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (515)
.....+.|+.++|.-|++ .|...+.+-.+..+.+...... +...-........
T Consensus 51 ~~~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~-----------------s~~~~~~~~~l~~-------- 105 (412)
T KOG3881|consen 51 GVDELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEIS-----------------SSLDDAKTVSLGT-------- 105 (412)
T ss_pred ccchhhhhhhheeecCCceeEeeccccCcccccccccCCccc-----------------ccccccccccccc--------
Confidence 345567888888887664 3443335556666666554432 1100011112222
Q ss_pred ccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccc
Q 010206 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (515)
Q Consensus 109 ~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~ 188 (515)
.+|..++. .+ ..|++|-.+|.+.+|....+..... .+.....|..+..
T Consensus 106 ----~~I~gl~~---~d-g~Litc~~sG~l~~~~~k~~d~hss------------------------~l~~la~g~g~~~ 153 (412)
T KOG3881|consen 106 ----KSIKGLKL---AD-GTLITCVSSGNLQVRHDKSGDLHSS------------------------KLIKLATGPGLYD 153 (412)
T ss_pred ----ccccchhh---cC-CEEEEEecCCcEEEEeccCCccccc------------------------cceeeecCCceee
Confidence 56777766 23 3788889999999999885432100 0001111111111
Q ss_pred -ccccCCCCCCCCCCCc--ccEEeeeeeecccccccccceeeeeec--cCcCCeEEEEecCC--CCEEEEe-CCCcEEEE
Q 010206 189 -NFGCASNDSSFPPGGV--SSLRLPVVVVTSQETNLVAGCRRIYAH--AHDYHINSISNNSD--GETFISA-DDLRINLW 260 (515)
Q Consensus 189 -~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~--~~~l~s~-~d~~i~iw 260 (515)
-.......++++|+.. ..+++|| +.........++.+.-.. .-.-.++++.|-+. ...|+++ .-+.+++|
T Consensus 154 ~r~~~~~p~Iva~GGke~~n~lkiwd--le~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~Y 231 (412)
T KOG3881|consen 154 VRQTDTDPYIVATGGKENINELKIWD--LEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLY 231 (412)
T ss_pred eccCCCCCceEecCchhcccceeeee--cccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEe
Confidence 1122233455778888 8999999 444333222222111000 11234567888877 8889998 89999999
Q ss_pred eCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccc
Q 010206 261 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 340 (515)
Q Consensus 261 d~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (515)
|.+.++.+.. .+.-...+++++...|.+ +++++|...+.+..||++.+++.. +.+.+
T Consensus 232 Dt~~qRRPV~-------~fd~~E~~is~~~l~p~g-n~Iy~gn~~g~l~~FD~r~~kl~g---------------~~~kg 288 (412)
T KOG3881|consen 232 DTRHQRRPVA-------QFDFLENPISSTGLTPSG-NFIYTGNTKGQLAKFDLRGGKLLG---------------CGLKG 288 (412)
T ss_pred cCcccCccee-------EeccccCcceeeeecCCC-cEEEEecccchhheecccCceeec---------------cccCC
Confidence 9997776654 333357789999999999 999999999999999999987642 22556
Q ss_pred cccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCee
Q 010206 341 IIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVA 378 (515)
Q Consensus 341 ~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~ 378 (515)
..+.|+++..+|.++++++++ |..++|+|+.+ .+++.
T Consensus 289 ~tGsirsih~hp~~~~las~GLDRyvRIhD~kt-rkll~ 326 (412)
T KOG3881|consen 289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT-RKLLH 326 (412)
T ss_pred ccCCcceEEEcCCCceEEeeccceeEEEeeccc-chhhh
Confidence 668999999999999999977 59999999997 55443
No 240
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.44 E-value=1.5e-11 Score=117.96 Aligned_cols=185 Identities=16% Similarity=0.153 Sum_probs=118.1
Q ss_pred CcCCeEEEEecCCCCEEEEe-C---CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEE-EEecCC-
Q 010206 233 HDYHINSISNNSDGETFISA-D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSKG- 306 (515)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~s~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~-~~~~dg- 306 (515)
+...+.+..|+|+++.|+.. . ...|++||+.+++.. .+..+...+.+++|+|++ +.|+ +.+.++
T Consensus 188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~---------~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~ 257 (417)
T TIGR02800 188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE---------KVASFPGMNGAPAFSPDG-SKLAVSLSKDGN 257 (417)
T ss_pred CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE---------EeecCCCCccceEECCCC-CEEEEEECCCCC
Confidence 33457778899999999876 2 357999999866432 122344556778999999 5554 555444
Q ss_pred -eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--C--eEEEEEeeCCCCCeeeEe
Q 010206 307 -SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--M--TLKLWDINMDSGPVATFQ 381 (515)
Q Consensus 307 -~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~--~i~iwd~~~~~~~~~~~~ 381 (515)
.|.+||+.++.... +..+........|+|||+.|+..++ + .|.++|+.. ++ ...+.
T Consensus 258 ~~i~~~d~~~~~~~~-----------------l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~-~~-~~~l~ 318 (417)
T TIGR02800 258 PDIYVMDLDGKQLTR-----------------LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG-GE-VRRLT 318 (417)
T ss_pred ccEEEEECCCCCEEE-----------------CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEEee
Confidence 58888887664211 1111123456789999998876543 3 567777653 32 33333
Q ss_pred eeccccccccccccCCCccceeeEEEcCCCCEEEEecCCC---cEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeE
Q 010206 382 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP 458 (515)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg---~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 458 (515)
.+... .....|+|+|++|+.++.++ .|.+||+.++... .+... .......|+|+++.|+
T Consensus 319 ~~~~~---------------~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~--~l~~~-~~~~~p~~spdg~~l~ 380 (417)
T TIGR02800 319 FRGGY---------------NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER--VLTDT-GLDESPSFAPNGRMIL 380 (417)
T ss_pred cCCCC---------------ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE--EccCC-CCCCCceECCCCCEEE
Confidence 22211 23689999999999887765 7889998875322 22222 1234568999999888
Q ss_pred eecCCC
Q 010206 459 LGSLSG 464 (515)
Q Consensus 459 s~~~d~ 464 (515)
..+.++
T Consensus 381 ~~~~~~ 386 (417)
T TIGR02800 381 YATTRG 386 (417)
T ss_pred EEEeCC
Confidence 777654
No 241
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.44 E-value=6.4e-11 Score=99.69 Aligned_cols=235 Identities=13% Similarity=0.152 Sum_probs=150.4
Q ss_pred CeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC------CeEE
Q 010206 236 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK------GSIR 309 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d------g~i~ 309 (515)
...+++|+.|...+++|.|.-.++|+.+--++..+ +......-.+..+-|..+ .+.+.|+.+ ..+.
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~------r~~~~~G~~~veMLfR~N--~laLVGGg~~pky~pNkvi 78 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESAS------RQFIDGGFKIVEMLFRSN--YLALVGGGSRPKYPPNKVI 78 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCchhhhhh------hccccCchhhhhHhhhhc--eEEEecCCCCCCCCCceEE
Confidence 44569999999999999666689999875332211 011111122333334332 233344443 4799
Q ss_pred EEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeecccccc
Q 010206 310 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPK 389 (515)
Q Consensus 310 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~ 389 (515)
|||=..... +..+. -..+|.++.++++ .|++.-.+.|+||.+..+.+.+..+.....+..
T Consensus 79 IWDD~k~~~----i~el~-------------f~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~et~~NPkG- 138 (346)
T KOG2111|consen 79 IWDDLKERC----IIELS-------------FNSEIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKG- 138 (346)
T ss_pred EEecccCcE----EEEEE-------------eccceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeeeecccCCCc-
Confidence 999332222 11222 1267999999865 677777789999999865666666655443322
Q ss_pred ccccccCCCccceeeEEEcCCCCEEEEec-CCCcEEEEecCCCCc-ceeeeccCCCceeeEEECCCCCeeEeecCCCeE-
Q 010206 390 LCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSA-ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVV- 466 (515)
Q Consensus 390 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~s-~dg~i~iw~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v- 466 (515)
++ +++-+.+..+||.-+ .-|.|+|-|+..... ....+++|.+.|.+++...+|..+|++|..|++
T Consensus 139 lC------------~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLI 206 (346)
T KOG2111|consen 139 LC------------SLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLI 206 (346)
T ss_pred eE------------eecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEE
Confidence 11 222222344566444 569999999986643 236789999999999999999999999999975
Q ss_pred EEec---CCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCc-EEEEe
Q 010206 467 RRVK---GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS-LYMYY 514 (515)
Q Consensus 467 ~l~~---~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~-~~i~~ 514 (515)
|+++ |..+. ++.. -.-.+.|.+++|||+..+||++++.| +-||+
T Consensus 207 RIFdt~~g~~l~--E~RR--G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 207 RIFDTEDGTLLQ--ELRR--GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred EEEEcCCCcEee--eeec--CCchheEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence 5532 22222 1110 01246899999999999999999877 66664
No 242
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=1.9e-09 Score=93.06 Aligned_cols=288 Identities=13% Similarity=0.191 Sum_probs=174.2
Q ss_pred ccchhhhhcccccccccccccceEEEEECCCCCeEEeecC---CCeEEEEEccc--CcccCccccCcccccccccCCccc
Q 010206 16 EWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDR---GGRVVLFERTD--TRDNGGQRRDLEMMDYSMSRHPEF 90 (515)
Q Consensus 16 ~w~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~lasg~~---dg~v~vw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 90 (515)
+|++-.--|+........+.+.++-++|+|+++.|.++.. +|.|..|.++. ++..
T Consensus 20 v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt-------------------- 79 (346)
T COG2706 20 VFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT-------------------- 79 (346)
T ss_pred EEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE--------------------
Confidence 4555432344445556778889999999999999998854 47788888764 3321
Q ss_pred eeee--ecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeC-CCeEEEEEccC-CeeEEEeeccCCcccCCCCCC
Q 010206 91 RYKT--EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTN-DKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGP 166 (515)
Q Consensus 91 ~~~~--~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~-d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~ 166 (515)
++. ...++ +-..++. ++++++++++.. -|.|.++-++. |.+........+
T Consensus 80 -~ln~~~~~g~--------------~p~yvsv--d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h--------- 133 (346)
T COG2706 80 -FLNRQTLPGS--------------PPCYVSV--DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKH--------- 133 (346)
T ss_pred -EeeccccCCC--------------CCeEEEE--CCCCCEEEEEEccCceEEEEEcccCCccccceeeeec---------
Confidence 111 11222 2366777 677888888854 47888888765 332222111100
Q ss_pred ccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCC
Q 010206 167 IFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG 246 (515)
Q Consensus 167 v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 246 (515)
.+.. ...+ .....+.+..+.|++
T Consensus 134 --------------------------------------------------~g~~--p~~r-----Q~~~h~H~a~~tP~~ 156 (346)
T COG2706 134 --------------------------------------------------TGSG--PHER-----QESPHVHSANFTPDG 156 (346)
T ss_pred --------------------------------------------------CCCC--CCcc-----ccCCccceeeeCCCC
Confidence 0000 0000 112336678899999
Q ss_pred CEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEe-cCCeEEEEecCccccccccc
Q 010206 247 ETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHS 323 (515)
Q Consensus 247 ~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~ 323 (515)
++|++. .--.|.+|++..++.... .+..+ .-....+-|.|+|++ ++...-+ -+++|.+|.........+.+
T Consensus 157 ~~l~v~DLG~Dri~~y~~~dg~L~~~----~~~~v-~~G~GPRHi~FHpn~-k~aY~v~EL~stV~v~~y~~~~g~~~~l 230 (346)
T COG2706 157 RYLVVPDLGTDRIFLYDLDDGKLTPA----DPAEV-KPGAGPRHIVFHPNG-KYAYLVNELNSTVDVLEYNPAVGKFEEL 230 (346)
T ss_pred CEEEEeecCCceEEEEEcccCccccc----ccccc-CCCCCcceEEEcCCC-cEEEEEeccCCEEEEEEEcCCCceEEEe
Confidence 999987 456799999985543221 11122 234557899999999 5555544 49999999987741111111
Q ss_pred ceeee-ccCCCccccccccccceeEEEEccCCCEEEEEcC--CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCcc
Q 010206 324 KLFEE-QEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIF 400 (515)
Q Consensus 324 ~~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (515)
..... ++. +. ......+|.+++||++|.++.. ..|.+|.+...+..+..+...... .. ..
T Consensus 231 Q~i~tlP~d------F~-g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te-g~--------~P- 293 (346)
T COG2706 231 QTIDTLPED------FT-GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE-GQ--------FP- 293 (346)
T ss_pred eeeccCccc------cC-CCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC-Cc--------CC-
Confidence 11111 000 11 1245788999999999999865 789999988644444433322211 00 00
Q ss_pred ceeeEEEcCCCCEEEEecC-CCcEEEEecCCC
Q 010206 401 DKFECCLSGDGGRVATGSY-SNLFRVFGCSEG 431 (515)
Q Consensus 401 ~v~~~~~s~~~~~l~s~s~-dg~i~iw~~~~~ 431 (515)
....|+++|++|+.+.. +..|.+|.+...
T Consensus 294 --R~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 294 --RDFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred --ccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 16889999999988875 457888877643
No 243
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=3.7e-11 Score=108.92 Aligned_cols=290 Identities=12% Similarity=0.150 Sum_probs=176.8
Q ss_pred cccccccceeEEEEEeecCCCcEEEe-eeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCC
Q 010206 106 LKSLEIEEKINKIRWCQSANSALYLL-STNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (515)
Q Consensus 106 ~~~~~~~~~v~~l~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~ 184 (515)
+..++++..-+.|.. ++||+|+++ |...-.|++||+.+-.++......... |. -..++.|-.
T Consensus 45 iQdfe~p~ast~ik~--s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~--------V~-------feiLsDD~S 107 (703)
T KOG2321|consen 45 IQDFEMPTASTRIKV--SPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEV--------VD-------FEILSDDYS 107 (703)
T ss_pred HHhcCCccccceeEe--cCCCcEEEEecccCCceEEEEcccceeeeeecccccc--------ee-------EEEeccchh
Confidence 445566688888888 667888766 567789999999987655444333211 10 001111111
Q ss_pred ccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEec-CCCCEEEEeCCCcEEEEeCC
Q 010206 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNN-SDGETFISADDLRINLWNLE 263 (515)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~~d~~i~iwd~~ 263 (515)
.+ +.-..|.+|.+-. .-+. .+...-...-.+++++ |...+++.|....|+-++++
T Consensus 108 K~------------v~L~~DR~IefHa-----k~G~-------hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLE 163 (703)
T KOG2321|consen 108 KS------------VFLQNDRTIEFHA-----KYGR-------HYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLE 163 (703)
T ss_pred hh------------eEeecCceeeehh-----hcCe-------eeeeecCcCCccccccCCCccEEEeecCcceEEEEcc
Confidence 11 1122233333211 0000 0000001122345554 34556666677888889998
Q ss_pred CCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccc
Q 010206 264 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 343 (515)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (515)
.+..+. .+....+.++++..++-. .+|++|+.+|.+..||.+....+.. ++...... .........
T Consensus 164 qGrfL~--------P~~~~~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv~~----l~~~~~v~-s~pg~~~~~ 229 (703)
T KOG2321|consen 164 QGRFLN--------PFETDSGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRVGT----LDAASSVN-SHPGGDAAP 229 (703)
T ss_pred cccccc--------ccccccccceeeeecCcc-ceEEecccCceEEEecchhhhhhee----eecccccC-CCccccccC
Confidence 776442 344456889999999987 7999999999999999998765432 22211100 000111123
Q ss_pred ceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCC--CCEEEEecCC
Q 010206 344 SISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD--GGRVATGSYS 420 (515)
Q Consensus 344 ~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~s~s~d 420 (515)
.|+++.|+.+|-.+++|+. |.+.|||++. .+++.. ..|....+ |..+.|.+. ++.|+|. +.
T Consensus 230 svTal~F~d~gL~~aVGts~G~v~iyDLRa-~~pl~~-kdh~~e~p-------------i~~l~~~~~~~q~~v~S~-Dk 293 (703)
T KOG2321|consen 230 SVTALKFRDDGLHVAVGTSTGSVLIYDLRA-SKPLLV-KDHGYELP-------------IKKLDWQDTDQQNKVVSM-DK 293 (703)
T ss_pred cceEEEecCCceeEEeeccCCcEEEEEccc-CCceee-cccCCccc-------------eeeecccccCCCceEEec-ch
Confidence 5999999999999999976 9999999996 555543 33443321 446778664 4455554 45
Q ss_pred CcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 421 NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 421 g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
..++|||-.+|+.. ..++. ...++.+++-|++..++++..+..+..
T Consensus 294 ~~~kiWd~~~Gk~~-asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 294 RILKIWDECTGKPM-ASIEP-TSDLNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred HHhhhcccccCCce-eeccc-cCCcCceeeecCCceEEEecCCCccee
Confidence 68999999988443 34433 344889999999999988887765543
No 244
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.42 E-value=1.8e-09 Score=99.92 Aligned_cols=273 Identities=12% Similarity=0.139 Sum_probs=156.2
Q ss_pred cccceEEEEECCCCCeEEeecC----CCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 34 EVDIISAIEFDKSGDHLATGDR----GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~----dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
-....+.++++|++++|.+... +|.|..|++..... ....+.......
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g-------------------~L~~~~~~~~~g--------- 86 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG-------------------TLTLLNSVPSGG--------- 86 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT-------------------EEEEEEEEEESS---------
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc-------------------eeEEeeeeccCC---------
Confidence 3455677899999999988865 57899999876410 001111111111
Q ss_pred cccceeEEEEEeecCCCcEEEeee-CCCeEEEEEccC-CeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~ 187 (515)
..-..+++ ++++++|+++. .+|.|.++++.. +.+............. .........++-.+.++|+|+.+.
T Consensus 87 ---~~p~~i~~--~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g--~~~~rq~~~h~H~v~~~pdg~~v~ 159 (345)
T PF10282_consen 87 ---SSPCHIAV--DPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSG--PNPDRQEGPHPHQVVFSPDGRFVY 159 (345)
T ss_dssp ---SCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEE--SSTTTTSSTCEEEEEE-TTSSEEE
T ss_pred ---CCcEEEEE--ecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCC--CcccccccccceeEEECCCCCEEE
Confidence 33456777 66777888886 489999999987 5544432211110000 000001112222789999999871
Q ss_pred cccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCC
Q 010206 188 RNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEIS 265 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~ 265 (515)
++.-....|.+|+ +......... ............+.+.|+|+++++... .+++|.++++...
T Consensus 160 -----------v~dlG~D~v~~~~--~~~~~~~l~~--~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~ 224 (345)
T PF10282_consen 160 -----------VPDLGADRVYVYD--IDDDTGKLTP--VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS 224 (345)
T ss_dssp -----------EEETTTTEEEEEE--E-TTS-TEEE--EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred -----------EEecCCCEEEEEE--EeCCCceEEE--eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc
Confidence 2223345788887 4333322211 112123445678899999999988775 5999999998833
Q ss_pred Cccccee---cccCccccccCCceEEEEEecCCCcEEEE-EecCCeEEEEecCc--ccccccccceeeeccCCCcccccc
Q 010206 266 NQSFNIV---DVKPANMEDLTEVITSAEFHPTHCNMLAY-SSSKGSIRLIDMRQ--SALCDTHSKLFEEQEAPGTRSFFT 339 (515)
Q Consensus 266 ~~~~~~~---~~~~~~~~~~~~~i~~i~~~p~~~~~l~~-~~~dg~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 339 (515)
......+ ...+.... .......|+++||+ ++|++ .-..+.|.+|++.. +.+. .+..+...
T Consensus 225 ~g~~~~~~~~~~~~~~~~-~~~~~~~i~ispdg-~~lyvsnr~~~sI~vf~~d~~~g~l~--~~~~~~~~---------- 290 (345)
T PF10282_consen 225 DGSLTEIQTISTLPEGFT-GENAPAEIAISPDG-RFLYVSNRGSNSISVFDLDPATGTLT--LVQTVPTG---------- 290 (345)
T ss_dssp TTEEEEEEEEESCETTSC-SSSSEEEEEE-TTS-SEEEEEECTTTEEEEEEECTTTTTEE--EEEEEEES----------
T ss_pred CCceeEEEEeeecccccc-ccCCceeEEEecCC-CEEEEEeccCCEEEEEEEecCCCceE--EEEEEeCC----------
Confidence 2222111 11111111 12367899999999 55554 44578899999943 3321 11122111
Q ss_pred ccccceeEEEEccCCCEEEEEc-C-CeEEEEEeeC
Q 010206 340 EIIASISDIKFARNGRHILSRD-Y-MTLKLWDINM 372 (515)
Q Consensus 340 ~~~~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~ 372 (515)
....+.+.++|+|++|+++. + +.|.+|++..
T Consensus 291 --G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 291 --GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp --SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred --CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 12368899999999999875 3 8999999874
No 245
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.41 E-value=2.1e-10 Score=102.76 Aligned_cols=142 Identities=18% Similarity=0.167 Sum_probs=97.0
Q ss_pred ccCCceEEEEEecCCCcEEEE--EecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEE
Q 010206 281 DLTEVITSAEFHPTHCNMLAY--SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL 358 (515)
Q Consensus 281 ~~~~~i~~i~~~p~~~~~l~~--~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 358 (515)
...++|...+|.|.+ +.|++ |-.+-.+.++|++..-. +..++ +.=..+.|+|.+++++
T Consensus 272 ~~~~pVhdf~W~p~S-~~F~vi~g~~pa~~s~~~lr~Nl~-------~~~Pe------------~~rNT~~fsp~~r~il 331 (561)
T COG5354 272 DLKDPVHDFTWEPLS-SRFAVISGYMPASVSVFDLRGNLR-------FYFPE------------QKRNTIFFSPHERYIL 331 (561)
T ss_pred cccccceeeeecccC-CceeEEecccccceeecccccceE-------EecCC------------cccccccccCcccEEE
Confidence 457899999999987 55443 45688899999987521 11111 3345678999999998
Q ss_pred EEc--C--CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEec------CCCcEEEEec
Q 010206 359 SRD--Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS------YSNLFRVFGC 428 (515)
Q Consensus 359 s~~--~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s------~dg~i~iw~~ 428 (515)
.++ . |.+.+||..........+.+.... -+.|+||++++.+.. .|+.+.|||+
T Consensus 332 ~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s-----------------~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 332 FAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTS-----------------YCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred EecCCccccceEEeccCCceEEEEEeecCCce-----------------EeeccCCceEEEecCCCcccccCcceEEEEe
Confidence 843 2 999999987422333344443322 578999999987654 4789999999
Q ss_pred CCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 429 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 429 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
... .. ...+.+.|.|.+++..+.|.+..-.+
T Consensus 395 ~g~-~~--------fel~~~~W~p~~~~~ttsSs~~~h~~ 425 (561)
T COG5354 395 YGA-KV--------FELTNITWDPSGQYVTTSSSCPKHKV 425 (561)
T ss_pred cCc-hh--------hhhhhccccCCcccceeeccCCCCcc
Confidence 743 12 14557788888888877777764443
No 246
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.40 E-value=2.4e-11 Score=103.23 Aligned_cols=222 Identities=16% Similarity=0.179 Sum_probs=133.1
Q ss_pred CCeEEEEecCCCC---EEEEeCCCcEEEEeCCCCCcccc-----------------e---------ecccCcc--ccccC
Q 010206 235 YHINSISNNSDGE---TFISADDLRINLWNLEISNQSFN-----------------I---------VDVKPAN--MEDLT 283 (515)
Q Consensus 235 ~~v~~~~~~~~~~---~l~s~~d~~i~iwd~~~~~~~~~-----------------~---------~~~~~~~--~~~~~ 283 (515)
..|+.+.|.++++ +|+++.|.+|++|.+........ + +...|+. -.+|.
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt 164 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT 164 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence 4566777776543 34445888888888764332210 0 0011111 13577
Q ss_pred CceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCC-CEEE-EEc
Q 010206 284 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHIL-SRD 361 (515)
Q Consensus 284 ~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~-s~~ 361 (515)
--|.+|.++.|. ..+++ ..|=.|.+|++.-.... ....+... .-+...+.-|++..|+|.. ..++ +.+
T Consensus 165 yhiNSIS~NsD~-Et~lS-ADdLRINLWnlei~d~s---FnIVDIKP-----~nmEeLteVITsaEFhp~~cn~f~YSSS 234 (433)
T KOG1354|consen 165 YHINSISVNSDK-ETFLS-ADDLRINLWNLEIIDQS---FNIVDIKP-----ANMEELTEVITSAEFHPHHCNVFVYSSS 234 (433)
T ss_pred eEeeeeeecCcc-ceEee-ccceeeeeccccccCCc---eeEEEccc-----cCHHHHHHHHhhhccCHhHccEEEEecC
Confidence 778999999997 56554 56778999998643221 11122111 1133344678999999943 3444 445
Q ss_pred CCeEEEEEeeCCCCCe---eeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeee
Q 010206 362 YMTLKLWDINMDSGPV---ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL 438 (515)
Q Consensus 362 ~~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~ 438 (515)
.|+|++.|++...-+. +.+....... ..-.-..-|..|..+.|+++|+|+++-+. -+|++||++.....+.+.
T Consensus 235 KGtIrLcDmR~~aLCd~hsKlfEepedp~---~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~ 310 (433)
T KOG1354|consen 235 KGTIRLCDMRQSALCDAHSKLFEEPEDPS---SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETY 310 (433)
T ss_pred CCcEEEeechhhhhhcchhhhhccccCCc---chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEE
Confidence 5999999998421111 1111111111 00111122335668999999999998655 589999996655555565
Q ss_pred ccCCC---------------ceeeEEECCCCCeeEeecCCCeEEEec
Q 010206 439 EASKN---------------PMRRQVQTPSRPSRPLGSLSGVVRRVK 470 (515)
Q Consensus 439 ~~~~~---------------~v~~~~~~~~~~~l~s~~~d~~v~l~~ 470 (515)
+.|.. .--.++|+.++.++++|+....++++.
T Consensus 311 ~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 311 PVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred eehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEec
Confidence 55532 123568889999999999999999943
No 247
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=8e-11 Score=106.38 Aligned_cols=314 Identities=11% Similarity=0.092 Sum_probs=185.2
Q ss_pred eEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEE
Q 010206 38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117 (515)
Q Consensus 38 v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~ 117 (515)
=+-+.|||-|.||+|--.-| |.+|--.+-. ....|. | ..|.-
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~-----------------------r~~RF~-H-------------p~Vq~ 254 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFD-----------------------RIQRFY-H-------------PGVQF 254 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHH-----------------------HHHhcc-C-------------CCcee
Confidence 36789999999999988777 8899733221 112222 2 34888
Q ss_pred EEEeecCCCcEEEeeeC-----------CCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcc
Q 010206 118 IRWCQSANSALYLLSTN-----------DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (515)
Q Consensus 118 l~~~~~~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l 186 (515)
+.|+| +.++|++-+. ...++|||+.+|.++..+... ..+...+.-..||.|++++
T Consensus 255 idfSP--~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~------------~~~~~~WP~frWS~DdKy~ 320 (698)
T KOG2314|consen 255 IDFSP--NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVI------------KSPYLKWPIFRWSHDDKYF 320 (698)
T ss_pred eecCC--ccceEEEecCCccccCcccCCCceEEEEEccccchhcceecc------------CCCccccceEEeccCCcee
Confidence 88854 4558888542 257999999999877655432 1222344467899999987
Q ss_pred ccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--C----CCcEEEE
Q 010206 187 ERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--D----DLRINLW 260 (515)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~----d~~i~iw 260 (515)
.+ - ...+|.||+ ...... ...+ .-....|..+.|+|.+++||.= . -..+.+.
T Consensus 321 Ar------------m-~~~sisIyE--tpsf~l-ld~K------slki~gIr~FswsP~~~llAYwtpe~~~~parvtL~ 378 (698)
T KOG2314|consen 321 AR------------M-TGNSISIYE--TPSFML-LDKK------SLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLM 378 (698)
T ss_pred EE------------e-ccceEEEEe--cCceee-eccc------ccCCccccCcccCCCcceEEEEcccccCCcceEEEE
Confidence 33 1 225677776 211110 0011 1123678889999999888852 1 2344555
Q ss_pred eCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEE----------ecCCeEEEEecCcccccccccceeeecc
Q 010206 261 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS----------SSKGSIRLIDMRQSALCDTHSKLFEEQE 330 (515)
Q Consensus 261 d~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~----------~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 330 (515)
.+.+.+.... ..-+.-.-..+-|..+| .+|..- +.-..+.|+.++...... ...+
T Consensus 379 evPs~~~iRt--------~nlfnVsDckLhWQk~g-dyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpv---e~ve--- 443 (698)
T KOG2314|consen 379 EVPSKREIRT--------KNLFNVSDCKLHWQKSG-DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPV---EVVE--- 443 (698)
T ss_pred ecCccceeee--------ccceeeeccEEEeccCC-cEEEEEEEeeccccccceEeeEEEEEeeccCCCc---eeee---
Confidence 5544332211 11122222344455555 444421 111234455554433211 1111
Q ss_pred CCCccccccccccceeEEEEccCCCEEEE--EcC--CeEEEEEeeCCCC---CeeeEeeeccccccccccccCCCcccee
Q 010206 331 APGTRSFFTEIIASISDIKFARNGRHILS--RDY--MTLKLWDINMDSG---PVATFQVHEHLRPKLCDLYENDSIFDKF 403 (515)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~s--~~~--~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 403 (515)
....|...+|-|.|..+++ |.. .++.+|.+.+... .+..+.... .+
T Consensus 444 ----------lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~-----------------~N 496 (698)
T KOG2314|consen 444 ----------LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKF-----------------AN 496 (698)
T ss_pred ----------cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccc-----------------cc
Confidence 2357899999999988776 444 7899998873221 222222211 23
Q ss_pred eEEEcCCCCEEEEe---cCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 404 ECCLSGDGGRVATG---SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 404 ~~~~s~~~~~l~s~---s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.+.|+|.|++++.+ |..|.+.++|+............| ...+.+.|.|.|+|+.+++.....++
T Consensus 497 ~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wrhk~ 563 (698)
T KOG2314|consen 497 TVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWRHKV 563 (698)
T ss_pred eEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeehhhhcc
Confidence 79999999998865 457899999987532222222223 34568899999999999988776655
No 248
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=1.7e-10 Score=107.41 Aligned_cols=303 Identities=11% Similarity=0.144 Sum_probs=196.2
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
++......|++|+....++|.|+.||.++|-.+.+.....+.. .++--.....-.++.||.
T Consensus 11 iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~--------glaa~snLsmNQtLeGH~----------- 71 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKS--------GLAAASNLSMNQTLEGHN----------- 71 (1189)
T ss_pred CCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCccccc--------ccccccccchhhhhccCc-----------
Confidence 4566778999999999999999999999999987665321111 111222334446788998
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
+.|..+.| ..+.+.|-++..+|.|.+|-+..+....
T Consensus 72 -~sV~vvTW--Ne~~QKLTtSDt~GlIiVWmlykgsW~E----------------------------------------- 107 (1189)
T KOG2041|consen 72 -ASVMVVTW--NENNQKLTTSDTSGLIIVWMLYKGSWCE----------------------------------------- 107 (1189)
T ss_pred -ceEEEEEe--ccccccccccCCCceEEEEeeecccHHH-----------------------------------------
Confidence 89999999 5666788888999999999987764211
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccc
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 270 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 270 (515)
+.. -....+-|.+++|+.||..++.. .||.|.+=.++..+ ...
T Consensus 108 --------------------------EMi---------NnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-Iwg 151 (1189)
T KOG2041|consen 108 --------------------------EMI---------NNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-IWG 151 (1189)
T ss_pred --------------------------HHh---------hCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-ecc
Confidence 000 01233668899999999999998 89999887776332 211
Q ss_pred eecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCccccccccc-ceeeeccCCCccccccccccceeEEE
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS-KLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
..++ ......+.|++|. ..++.+-.+|.+.+||....-...-.. ........ +......|..+.
T Consensus 152 ------KeLk--g~~l~hv~ws~D~-~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~------~s~~~~kia~i~ 216 (1189)
T KOG2041|consen 152 ------KELK--GQLLAHVLWSEDL-EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGI------FSNFPTKIAEIE 216 (1189)
T ss_pred ------hhcc--hheccceeecccH-HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeee------ecCCCcccccee
Confidence 0111 1223478899998 788888889999999976432211000 00111000 000011244444
Q ss_pred Ec--------cCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCC
Q 010206 350 FA--------RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 420 (515)
Q Consensus 350 ~s--------~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d 420 (515)
|. ||...|+.+-+ |.+.|..-.+...++-.-.+. .+....|+++|..|+.++.+
T Consensus 217 w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm-----------------~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 217 WNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGM-----------------KIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred eccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEeccc-----------------EeecceecCCCcEEEEccCc
Confidence 42 47778888765 887776655433333222211 14478999999999988764
Q ss_pred ---------CcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 421 ---------NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 421 ---------g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+.|.+|..- +....+++.....|+.+.|-..|-.+|.+ .|+.+.+
T Consensus 280 ~da~~~~d~n~v~Fysp~--G~i~gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyf 333 (1189)
T KOG2041|consen 280 SDADEPTDSNKVHFYSPY--GHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYF 333 (1189)
T ss_pred ccccCccccceEEEeccc--hhheEEEecCCceeeeeEEcCCceEEEEE-ecceEEE
Confidence 367777654 45667888888899999997666555444 4666655
No 249
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.36 E-value=4.5e-11 Score=116.00 Aligned_cols=148 Identities=15% Similarity=0.140 Sum_probs=120.7
Q ss_pred ecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccc
Q 010206 242 NNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD 320 (515)
Q Consensus 242 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~ 320 (515)
++++.-++++| .-+.|.+|+....+.. ..+.+|.+.|.++.++.|| +++++.+.|+++|+|++.+.+...
T Consensus 141 ~s~~~~~i~~gsv~~~iivW~~~~dn~p--------~~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~~~ 211 (967)
T KOG0974|consen 141 DSAEELYIASGSVFGEIIVWKPHEDNKP--------IRLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREVLG 211 (967)
T ss_pred ccCcEEEEEeccccccEEEEeccccCCc--------ceecccCCceEEEEEccCC-cEEEEEecCcceeeeecccccccC
Confidence 46677778888 7899999999833322 2578999999999999999 999999999999999999876432
Q ss_pred cccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCc
Q 010206 321 THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSI 399 (515)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (515)
.+.-+|+..+..+.|.|. .+++++ |.+.++|+.. +..+..+..|...
T Consensus 212 ---------------~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~--~~~l~~y~~h~g~------------- 259 (967)
T KOG0974|consen 212 ---------------CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN--GTQLEVYDEHSGK------------- 259 (967)
T ss_pred ---------------cccccccceeEEEEeccc--eeEEeccceEEEEEecc--cceehhhhhhhhc-------------
Confidence 235678999999999988 777765 5999999776 6666677777643
Q ss_pred cceeeEEEcCCCCEEEEecCCCcEEEEecCCC
Q 010206 400 FDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 400 ~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
.++.++..++.-.++|++.|+.+++|++...
T Consensus 260 -~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 260 -GIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred -ceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 2568999999999999999999999998754
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=7.8e-10 Score=105.78 Aligned_cols=167 Identities=14% Similarity=0.223 Sum_probs=94.4
Q ss_pred EEEecCCCCEEEEe--CCCc--EEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEe-cCC--eEEEE
Q 010206 239 SISNNSDGETFISA--DDLR--INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKG--SIRLI 311 (515)
Q Consensus 239 ~~~~~~~~~~l~s~--~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg--~i~~w 311 (515)
...|+||++.|+.. .++. |+++|+.+++.. .+..+.......+|+||+ +.|+..+ .++ .|.++
T Consensus 266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~---------~lt~~~~~~~~p~wSpDG-~~I~f~s~~~g~~~Iy~~ 335 (448)
T PRK04792 266 APRFSPDGKKLALVLSKDGQPEIYVVDIATKALT---------RITRHRAIDTEPSWHPDG-KSLIFTSERGGKPQIYRV 335 (448)
T ss_pred CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE---------ECccCCCCccceEECCCC-CEEEEEECCCCCceEEEE
Confidence 46789999988753 4554 777788755422 223344456778999999 5555444 344 45556
Q ss_pred ecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-C-C--eEEEEEeeCCCCCeeeEeeecccc
Q 010206 312 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-M--TLKLWDINMDSGPVATFQVHEHLR 387 (515)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~-~--~i~iwd~~~~~~~~~~~~~~~~~~ 387 (515)
|+.+++... + ++.. .......|+|||++|+..+ . + .|.++|+.. ++ ...+.... .
T Consensus 336 dl~~g~~~~--L-t~~g--------------~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~-g~-~~~lt~~~-~- 394 (448)
T PRK04792 336 NLASGKVSR--L-TFEG--------------EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET-GA-MQVLTSTR-L- 394 (448)
T ss_pred ECCCCCEEE--E-ecCC--------------CCCcCeeECCCCCEEEEEEecCCceEEEEEECCC-CC-eEEccCCC-C-
Confidence 766554210 0 0111 1223468999999988743 2 4 455566653 32 23332111 1
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEecC-CC--cEEEEecCCCCcceeeeccCCCceeeEEECC
Q 010206 388 PKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SN--LFRVFGCSEGSAESTTLEASKNPMRRQVQTP 452 (515)
Q Consensus 388 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~-dg--~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~ 452 (515)
.....|+|||++|+..+. ++ .+++++.. + .....+..+...+...+|+|
T Consensus 395 --------------d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G-~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 395 --------------DESPSVAPNGTMVIYSTTYQGKQVLAAVSID-G-RFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred --------------CCCceECCCCCEEEEEEecCCceEEEEEECC-C-CceEECcCCCCCcCCCccCC
Confidence 014589999998876553 33 36677764 3 33344544444555666665
No 251
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=1.8e-10 Score=110.09 Aligned_cols=214 Identities=13% Similarity=0.159 Sum_probs=123.3
Q ss_pred cCcCCeEEEEecCCCCEEEEe--CC--CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEE-EEecCC
Q 010206 232 AHDYHINSISNNSDGETFISA--DD--LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSKG 306 (515)
Q Consensus 232 ~~~~~v~~~~~~~~~~~l~s~--~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~-~~~~dg 306 (515)
.+...+.+..|+|||+.|+.. .+ ..|.+||+.+++.. . +....+.....+|+||| +.|+ +.+.++
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-~--------lt~~~g~~~~~~wSPDG-~~La~~~~~~g 284 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-K--------VTSFPGINGAPRFSPDG-KKLALVLSKDG 284 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-E--------ecCCCCCcCCeeECCCC-CEEEEEEeCCC
Confidence 445678889999999998875 33 35888898765432 1 11112233467999999 5554 556666
Q ss_pred e--EEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--C--eEEEEEeeCCCCCeeeE
Q 010206 307 S--IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--M--TLKLWDINMDSGPVATF 380 (515)
Q Consensus 307 ~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~--~i~iwd~~~~~~~~~~~ 380 (515)
. |.++|+.+++.. . +..+........|+|||+.|+..++ + .|.++|+.. ++ ...+
T Consensus 285 ~~~Iy~~dl~tg~~~-----~------------lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~-g~-~~~L 345 (448)
T PRK04792 285 QPEIYVVDIATKALT-----R------------ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS-GK-VSRL 345 (448)
T ss_pred CeEEEEEECCCCCeE-----E------------CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEEE
Confidence 5 777787765431 1 1112234567899999998876442 4 455556553 32 3333
Q ss_pred eeeccccccccccccCCCccceeeEEEcCCCCEEEEecC-CC--cEEEEecCCCCcceeeeccCCCceeeEEECCCCCee
Q 010206 381 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SN--LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSR 457 (515)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~-dg--~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 457 (515)
...... ....+|+|||++|+..+. ++ .|.++|+.++... .+.... ......|+|+++.|
T Consensus 346 t~~g~~---------------~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~--~lt~~~-~d~~ps~spdG~~I 407 (448)
T PRK04792 346 TFEGEQ---------------NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ--VLTSTR-LDESPSVAPNGTMV 407 (448)
T ss_pred ecCCCC---------------CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE--EccCCC-CCCCceECCCCCEE
Confidence 211111 125789999999876554 34 4555777766322 222221 12245799999987
Q ss_pred EeecCC-Ce--EEE--ecCCCCCccccCCccccccCCeeEEEEcCC
Q 010206 458 PLGSLS-GV--VRR--VKGADNSALDANGNAFDFSMKLLHLAWHPS 498 (515)
Q Consensus 458 ~s~~~d-~~--v~l--~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 498 (515)
+..+.+ +. +.+ .++.... ......+.+...+|+|-
T Consensus 408 ~~~~~~~g~~~l~~~~~~G~~~~------~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 408 IYSTTYQGKQVLAAVSIDGRFKA------RLPAGQGEVKSPAWSPF 447 (448)
T ss_pred EEEEecCCceEEEEEECCCCceE------ECcCCCCCcCCCccCCC
Confidence 766543 33 333 2222211 11123456778888873
No 252
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=4.4e-10 Score=107.97 Aligned_cols=215 Identities=15% Similarity=0.140 Sum_probs=128.0
Q ss_pred ccCcCCeEEEEecCCCCEEEEe--CC--CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEE-EEecC
Q 010206 231 HAHDYHINSISNNSDGETFISA--DD--LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSK 305 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~s~--~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~-~~~~d 305 (515)
..+...+....|+|||+.|+.. .+ ..|.+||+.+++.. .+....+.+...+|+||| +.|+ +...+
T Consensus 195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~---------~l~~~~g~~~~~~~SpDG-~~la~~~~~~ 264 (430)
T PRK00178 195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE---------QITNFEGLNGAPAWSPDG-SKLAFVLSKD 264 (430)
T ss_pred ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE---------EccCCCCCcCCeEECCCC-CEEEEEEccC
Confidence 3455678899999999998764 33 46889999866432 112223345578999999 5555 55555
Q ss_pred C--eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--C--eEEEEEeeCCCCCeee
Q 010206 306 G--SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--M--TLKLWDINMDSGPVAT 379 (515)
Q Consensus 306 g--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~--~i~iwd~~~~~~~~~~ 379 (515)
+ .|.+||+.++... . +..+........|+|||+.|+..++ + .|+++|+.. ++ ...
T Consensus 265 g~~~Iy~~d~~~~~~~-----~------------lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~-g~-~~~ 325 (430)
T PRK00178 265 GNPEIYVMDLASRQLS-----R------------VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG-GR-AER 325 (430)
T ss_pred CCceEEEEECCCCCeE-----E------------cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEE
Confidence 5 5888898876531 1 1112234556789999998876543 3 566667653 33 333
Q ss_pred EeeeccccccccccccCCCccceeeEEEcCCCCEEEEecC-CC--cEEEEecCCCCcceeeeccCCCceeeEEECCCCCe
Q 010206 380 FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SN--LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPS 456 (515)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~-dg--~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 456 (515)
+...... .....|+|||++|+..+. ++ .|.+||+.++.... +.. ........|+|+|+.
T Consensus 326 lt~~~~~---------------~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~--lt~-~~~~~~p~~spdg~~ 387 (430)
T PRK00178 326 VTFVGNY---------------NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI--LTD-TSLDESPSVAPNGTM 387 (430)
T ss_pred eecCCCC---------------ccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE--ccC-CCCCCCceECCCCCE
Confidence 3211110 115789999999886654 33 58889998764332 221 112235689999999
Q ss_pred eEeecCC-CeEEE----ecCCCCCccccCCccccccCCeeEEEEcCC
Q 010206 457 RPLGSLS-GVVRR----VKGADNSALDANGNAFDFSMKLLHLAWHPS 498 (515)
Q Consensus 457 l~s~~~d-~~v~l----~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 498 (515)
++..+.+ +.-++ .++.... .+ ....+.+...+|+|-
T Consensus 388 i~~~~~~~g~~~l~~~~~~g~~~~--~l----~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 388 LIYATRQQGRGVLMLVSINGRVRL--PL----PTAQGEVREPSWSPY 428 (430)
T ss_pred EEEEEecCCceEEEEEECCCCceE--EC----cCCCCCcCCCccCCC
Confidence 8776654 33333 2222111 11 113456777888874
No 253
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.29 E-value=9.6e-08 Score=98.26 Aligned_cols=354 Identities=12% Similarity=0.139 Sum_probs=191.4
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEE----EcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 34 EVDIISAIEFDKSGDHLATGDRGGRVVLF----ERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~dg~v~vw----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
..+.|.++.|-++...++.+..+|.|.+. +..+.... ....
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E---------------------~VG~-------------- 118 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIE---------------------IVGS-------------- 118 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE---------------------EEEE--------------
Confidence 44789999999999999999999999998 33322210 1111
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccC-------------CeeEE--------EeeccCCcccC-------
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQE-------------KKVKK--------VFDWNVHPEKA------- 161 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~-------------~~~~~--------~~~~~~~~~~~------- 161 (515)
++..|.+++|+ ||++.|+.++.++++.+..-.= +..+. ..+++....+.
T Consensus 119 -vd~GI~a~~WS--PD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~ 195 (928)
T PF04762_consen 119 -VDSGILAASWS--PDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRD 195 (928)
T ss_pred -EcCcEEEEEEC--CCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccC
Confidence 12679999994 5677999999899888764221 00000 01111111110
Q ss_pred -----CCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCC
Q 010206 162 -----AGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYH 236 (515)
Q Consensus 162 -----~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (515)
...+.+. .......+.|..||+++.+..... ..+....+++|+ .++...... ..-.+-
T Consensus 196 p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~------~~~~~R~iRVy~-----ReG~L~stS-----E~v~gL 258 (928)
T PF04762_consen 196 PTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEP------ETGSRRVIRVYS-----REGELQSTS-----EPVDGL 258 (928)
T ss_pred CCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEc------CCCceeEEEEEC-----CCceEEecc-----ccCCCc
Confidence 0011111 122333778899999874332210 011346788887 443221111 111222
Q ss_pred eEEEEecCCCCEEEEe-C---CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEe
Q 010206 237 INSISNNSDGETFISA-D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 312 (515)
Q Consensus 237 v~~~~~~~~~~~l~s~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd 312 (515)
-.+++|.|.|++||+. . ...|.+|.-+ + ....-+.+ .+......|..+.|++++ .+||.-..|. |.+|-
T Consensus 259 e~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-G-LrhgeF~l---~~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt 331 (928)
T PF04762_consen 259 EGALSWRPSGNLIASSQRLPDRHDVVFFERN-G-LRHGEFTL---RFDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWT 331 (928)
T ss_pred cCCccCCCCCCEEEEEEEcCCCcEEEEEecC-C-cEeeeEec---CCCCCCceeeEEEECCCC-CEEEEEecCC-ceEEE
Confidence 3478999999999987 2 4566666654 2 22211111 112346678999999998 8888877655 99999
Q ss_pred cCcccccccccceeeeccCCCccccccccccceeEEEEccC-CCEEEEEcC-CeEEEEEee----CCC-------CCeee
Q 010206 313 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-GRHILSRDY-MTLKLWDIN----MDS-------GPVAT 379 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~s~~~-~~i~iwd~~----~~~-------~~~~~ 379 (515)
..+-.-..+..-.+... ..+..+.|+|. ...|..... +.+..+++. ... ..+..
T Consensus 332 ~~NYHWYLKqei~~~~~-------------~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaV 398 (928)
T PF04762_consen 332 RSNYHWYLKQEIRFSSS-------------ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAV 398 (928)
T ss_pred eeCCEEEEEEEEEccCC-------------CCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEE
Confidence 87754332211111111 23444788873 334444433 555544432 100 01111
Q ss_pred Eeeec---------cccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc-------eeeec----
Q 010206 380 FQVHE---------HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE-------STTLE---- 439 (515)
Q Consensus 380 ~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~-------~~~~~---- 439 (515)
+.+.. ...+.++ .+.-..-..|.+++|++++..+++-..||.|.+|........ ...+.
T Consensus 399 IDG~~lllTpf~~a~VPPPMs-~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (928)
T PF04762_consen 399 IDGNKLLLTPFRRAVVPPPMS-SYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSM 477 (928)
T ss_pred EeCCeEEEecccccCCCchHh-ceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccc
Confidence 11111 0011110 111111224668999999988999999999999986543211 01111
Q ss_pred ------cCCCceeeEEECCCCCeeEeecCC
Q 010206 440 ------ASKNPMRRQVQTPSRPSRPLGSLS 463 (515)
Q Consensus 440 ------~~~~~v~~~~~~~~~~~l~s~~~d 463 (515)
.....+..++|..+...++..+.+
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (928)
T PF04762_consen 478 DISDSELPLGSLRQLAWLNDDTLLVLSDSD 507 (928)
T ss_pred cccccccccccEEEEEEeCCCEEEEEEecC
Confidence 123446777887777766555554
No 254
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=1.9e-09 Score=103.56 Aligned_cols=168 Identities=12% Similarity=0.155 Sum_probs=96.2
Q ss_pred EEEEecCCCCEEEEe--CCC--cEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEe-cCC--eEEE
Q 010206 238 NSISNNSDGETFISA--DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKG--SIRL 310 (515)
Q Consensus 238 ~~~~~~~~~~~l~s~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg--~i~~ 310 (515)
....|+|||+.|+.. .++ .|++||+.++... .+..+........|+||+ +.|+..+ .++ .|.+
T Consensus 246 ~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~---------~lt~~~~~~~~~~~spDg-~~i~f~s~~~g~~~iy~ 315 (430)
T PRK00178 246 GAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS---------RVTNHPAIDTEPFWGKDG-RTLYFTSDRGGKPQIYK 315 (430)
T ss_pred CCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE---------EcccCCCCcCCeEECCCC-CEEEEEECCCCCceEEE
Confidence 357789999888753 343 6888898865422 223344455678899999 5555444 344 4666
Q ss_pred EecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC----CeEEEEEeeCCCCCeeeEeeeccc
Q 010206 311 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY----MTLKLWDINMDSGPVATFQVHEHL 386 (515)
Q Consensus 311 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~----~~i~iwd~~~~~~~~~~~~~~~~~ 386 (515)
+|+.+++... + .+.. .......|+|+|+.|+.... ..|.+||+.+ ++ ...+.. ...
T Consensus 316 ~d~~~g~~~~--l-t~~~--------------~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t-g~-~~~lt~-~~~ 375 (430)
T PRK00178 316 VNVNGGRAER--V-TFVG--------------NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR-GS-VRILTD-TSL 375 (430)
T ss_pred EECCCCCEEE--e-ecCC--------------CCccceEECCCCCEEEEEEccCCceEEEEEECCC-CC-EEEccC-CCC
Confidence 7776654210 0 0110 12335689999999987532 3578888875 33 233321 111
Q ss_pred cccccccccCCCccceeeEEEcCCCCEEEEecCC-C--cEEEEecCCCCcceeeeccCCCceeeEEECC
Q 010206 387 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-N--LFRVFGCSEGSAESTTLEASKNPMRRQVQTP 452 (515)
Q Consensus 387 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d-g--~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~ 452 (515)
.....|+|||++|+..+.+ | .|+++++..+ ....+..+...+....|+|
T Consensus 376 ---------------~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~--~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 376 ---------------DESPSVAPNGTMLIYATRQQGRGVLMLVSINGR--VRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred ---------------CCCceECCCCCEEEEEEecCCceEEEEEECCCC--ceEECcCCCCCcCCCccCC
Confidence 0156899999998866543 3 4666676532 2233443444445555554
No 255
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.28 E-value=7.7e-10 Score=106.27 Aligned_cols=203 Identities=13% Similarity=0.108 Sum_probs=125.2
Q ss_pred CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC---CeEEEEecCcccccccccceeeecc
Q 010206 254 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSALCDTHSKLFEEQE 330 (515)
Q Consensus 254 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~ 330 (515)
...|.++|...... . .+..+...+.+.+|+|++ +.|+....+ ..|.+||+.+++...
T Consensus 169 ~~~l~~~d~~g~~~-~--------~l~~~~~~~~~p~~Spdg-~~la~~~~~~~~~~i~v~d~~~g~~~~---------- 228 (417)
T TIGR02800 169 RYELQVADYDGANP-Q--------TITRSREPILSPAWSPDG-QKLAYVSFESGKPEIYVQDLATGQREK---------- 228 (417)
T ss_pred cceEEEEcCCCCCC-E--------EeecCCCceecccCCCCC-CEEEEEEcCCCCcEEEEEECCCCCEEE----------
Confidence 34577777753322 1 333456678899999999 777776654 479999998764311
Q ss_pred CCCccccccccccceeEEEEccCCCEEEE-EcC---CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEE
Q 010206 331 APGTRSFFTEIIASISDIKFARNGRHILS-RDY---MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC 406 (515)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~s-~~~---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 406 (515)
+..+...+.++.|+|||+.|+. .+. ..|++||+.+ + ....+..+... .....
T Consensus 229 -------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~-~-~~~~l~~~~~~---------------~~~~~ 284 (417)
T TIGR02800 229 -------VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG-K-QLTRLTNGPGI---------------DTEPS 284 (417)
T ss_pred -------eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCC-C-CEEECCCCCCC---------------CCCEE
Confidence 1112234567899999997765 332 4688888874 3 33333322211 12578
Q ss_pred EcCCCCEEEEecC-CC--cEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCC---eEEEecCCCCCccccC
Q 010206 407 LSGDGGRVATGSY-SN--LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSG---VVRRVKGADNSALDAN 480 (515)
Q Consensus 407 ~s~~~~~l~s~s~-dg--~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~---~v~l~~~~~~~~~~~~ 480 (515)
|+|||+.|+..+. ++ .|+++++.+++. ..+..+........++|++++++..+.++ .|.+++-.....
T Consensus 285 ~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~--~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~---- 358 (417)
T TIGR02800 285 WSPDGKSIAFTSDRGGSPQIYMMDADGGEV--RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE---- 358 (417)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCE--EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe----
Confidence 9999998876554 33 577888876532 34444455667889999999998887765 444432211110
Q ss_pred CccccccCCeeEEEEcCCCCEEEEEcC
Q 010206 481 GNAFDFSMKLLHLAWHPSENSIACAAS 507 (515)
Q Consensus 481 ~~~~~~~~~i~~~~~s~~~~~la~~~~ 507 (515)
..+.........+|+||+++|+.++.
T Consensus 359 -~~l~~~~~~~~p~~spdg~~l~~~~~ 384 (417)
T TIGR02800 359 -RVLTDTGLDESPSFAPNGRMILYATT 384 (417)
T ss_pred -EEccCCCCCCCceECCCCCEEEEEEe
Confidence 11111223456789999999987654
No 256
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.28 E-value=1.2e-09 Score=91.14 Aligned_cols=210 Identities=16% Similarity=0.120 Sum_probs=131.0
Q ss_pred ceeEEEEEeecCCCc--EEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 113 EKINKIRWCQSANSA--LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..+..+.|+..+.+. .++-+-.+|.|.++..........+..-. .-.+.. ..+.++.|++.+..+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls-------~~ki~~--~~~lslD~~~~~~~i---- 136 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLS-------SKKISV--VEALSLDISTSGTKI---- 136 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccc-------hhhhhh--eeeeEEEeeccCceE----
Confidence 557788887544332 35556778999999876544322221110 000000 011256677777776
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC-CCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
++...+|.+.+-+ . .+... +.. ...+.|..++....|+.. .+++.+| +|+.+..||++.++..
T Consensus 137 --------~vs~s~G~~~~v~--~--t~~~l--e~v-q~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~ 201 (339)
T KOG0280|consen 137 --------FVSDSRGSISGVY--E--TEMVL--EKV-QTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF 201 (339)
T ss_pred --------EEEcCCCcEEEEe--c--ceeee--eec-ccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce
Confidence 7777778777433 1 11110 111 124789999999999764 4566677 8999999999955432
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
.- ...+-|...|.+|.-+|..+..+++|+.|-.|++||.|+-.... ++ ....+.|..+
T Consensus 202 i~------~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl-----~~-----------~~v~GGVWRi 259 (339)
T KOG0280|consen 202 IW------HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPL-----FK-----------AKVGGGVWRI 259 (339)
T ss_pred ee------ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcc-----cc-----------CccccceEEE
Confidence 11 12345888999999998767899999999999999999643211 11 1122689999
Q ss_pred EEccC--CCEEEEEcCCeEEEEEeeC
Q 010206 349 KFARN--GRHILSRDYMTLKLWDINM 372 (515)
Q Consensus 349 ~~s~~--~~~l~s~~~~~i~iwd~~~ 372 (515)
..+|. +++|+++-.+-.+|-+...
T Consensus 260 ~~~p~~~~~lL~~CMh~G~ki~~~~~ 285 (339)
T KOG0280|consen 260 KHHPEIFHRLLAACMHNGAKILDSSD 285 (339)
T ss_pred EecchhhhHHHHHHHhcCceEEEecc
Confidence 99983 4455555445567777664
No 257
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=2.5e-09 Score=101.46 Aligned_cols=221 Identities=13% Similarity=0.094 Sum_probs=122.2
Q ss_pred CcCCeEEEEecCCCCE--E-EEe-C--CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEec-C
Q 010206 233 HDYHINSISNNSDGET--F-ISA-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-K 305 (515)
Q Consensus 233 ~~~~v~~~~~~~~~~~--l-~s~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~-d 305 (515)
......+-.|+|||+. + .++ . ...|.+.++..++.. .+....+.....+|+||| +.|+..+. +
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~---------~lt~~~g~~~~p~wSPDG-~~Laf~s~~~ 252 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK---------KILALQGNQLMPTFSPRK-KLLAFISDRY 252 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce---------EeecCCCCccceEECCCC-CEEEEEECCC
Confidence 3345567799999875 3 234 3 346777788765432 222234445568999999 66665442 2
Q ss_pred C----eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--CeEEEEEeeC--CCCCe
Q 010206 306 G----SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINM--DSGPV 377 (515)
Q Consensus 306 g----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~--~~~~~ 377 (515)
| .+.+|++..+... . ...+ ..+.........|+|||+.|+..++ +...+|.+.. .+...
T Consensus 253 g~~di~~~~~~~~~g~~g-~-~~~l-----------t~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~ 319 (428)
T PRK01029 253 GNPDLFIQSFSLETGAIG-K-PRRL-----------LNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP 319 (428)
T ss_pred CCcceeEEEeecccCCCC-c-ceEe-----------ecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce
Confidence 3 3444666543110 0 0000 1111123456799999998887543 5555555432 12223
Q ss_pred eeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCC---CcEEEEecCCCCcceeeeccCCCceeeEEECCCC
Q 010206 378 ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR 454 (515)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d---g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 454 (515)
..+...... +....|||||+.|+..+.+ ..|++||+.+++.. .+......+....|+|++
T Consensus 320 ~~lt~~~~~---------------~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~--~Lt~~~~~~~~p~wSpDG 382 (428)
T PRK01029 320 RLLTKKYRN---------------SSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY--QLTTSPENKESPSWAIDS 382 (428)
T ss_pred EEeccCCCC---------------ccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE--EccCCCCCccceEECCCC
Confidence 333222111 2368999999998866543 46899999877433 333223355678999999
Q ss_pred CeeEeec-CC--CeEEE--ecCCCCCccccCCccccccCCeeEEEEcCCC
Q 010206 455 PSRPLGS-LS--GVVRR--VKGADNSALDANGNAFDFSMKLLHLAWHPSE 499 (515)
Q Consensus 455 ~~l~s~~-~d--~~v~l--~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 499 (515)
+.|+... .. ..+.+ +++.+.. ......+.+...+|+|-.
T Consensus 383 ~~L~f~~~~~g~~~L~~vdl~~g~~~------~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 383 LHLVYSAGNSNESELYLISLITKKTR------KIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred CEEEEEECCCCCceEEEEECCCCCEE------EeecCCCcccCceecCCC
Confidence 9876443 33 33444 2222221 111123456788888754
No 258
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.23 E-value=2.2e-09 Score=98.26 Aligned_cols=180 Identities=16% Similarity=0.200 Sum_probs=131.8
Q ss_pred CCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEE------ec-------------CCCcEEEEEe
Q 010206 244 SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF------HP-------------THCNMLAYSS 303 (515)
Q Consensus 244 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~------~p-------------~~~~~l~~~~ 303 (515)
|...++|.. .||.+++||....+....+... .. ..+.-++..| +| .+...++-|.
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~--~~---~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt 77 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPI--AS---LSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT 77 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccc--hh---ccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence 456678887 8999999999877654433211 01 1222233333 22 1125788899
Q ss_pred cCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEee
Q 010206 304 SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV 382 (515)
Q Consensus 304 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~ 382 (515)
..|.|.+|++..+++..+ +. -..|.+.|.++.++.+-..|.+++. +.+..|+... .+.+..+..
T Consensus 78 ~~g~v~~ys~~~g~it~~----~s----------t~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~-~~~~~~~~~ 142 (541)
T KOG4547|consen 78 PQGSVLLYSVAGGEITAK----LS----------TDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE-KVIIRIWKE 142 (541)
T ss_pred CCccEEEEEecCCeEEEE----Ee----------cCCCCCcceeeecccccCceEecCCceeEEEEeccc-ceeeeeecc
Confidence 999999999988875322 11 1347789999999998889999765 9999999985 777777766
Q ss_pred eccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCC-----CCee
Q 010206 383 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS-----RPSR 457 (515)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l 457 (515)
....+ .+++.+|||..|++++ +.|++||++++ +.+.++.+|.++|+.+.|.-+ |.++
T Consensus 143 ~~~~~---------------~sl~is~D~~~l~~as--~~ik~~~~~~k-evv~~ftgh~s~v~t~~f~~~~~g~~G~~v 204 (541)
T KOG4547|consen 143 QKPLV---------------SSLCISPDGKILLTAS--RQIKVLDIETK-EVVITFTGHGSPVRTLSFTTLIDGIIGKYV 204 (541)
T ss_pred CCCcc---------------ceEEEcCCCCEEEecc--ceEEEEEccCc-eEEEEecCCCcceEEEEEEEecccccccee
Confidence 55442 3899999999999887 58999999987 677899999999999999766 6666
Q ss_pred Eeec
Q 010206 458 PLGS 461 (515)
Q Consensus 458 ~s~~ 461 (515)
+++.
T Consensus 205 Lssa 208 (541)
T KOG4547|consen 205 LSSA 208 (541)
T ss_pred eecc
Confidence 5543
No 259
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.21 E-value=2.2e-09 Score=98.25 Aligned_cols=207 Identities=12% Similarity=0.161 Sum_probs=145.0
Q ss_pred CCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCc
Q 010206 125 NSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGV 204 (515)
Q Consensus 125 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~ 204 (515)
...+++....||.+++|+...+++...+... +..+..
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~-------------------------------------------~~~s~t 40 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPI-------------------------------------------ASLSGT 40 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccc-------------------------------------------hhccCc
Confidence 3468999999999999999998765543322 333444
Q ss_pred ccEEeeeeeecccccccccceeeeeeccCcCCeEEEEe----cCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccc
Q 010206 205 SSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISN----NSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANM 279 (515)
Q Consensus 205 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 279 (515)
++-..|.+ ..... .....++.+ +-+...++-| ..|.|.+|++..++....+ .-
T Consensus 41 ~~~~~w~L--~~~~s--------------~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~------st 98 (541)
T KOG4547|consen 41 CTYTKWGL--SADYS--------------PMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKL------ST 98 (541)
T ss_pred ceeEEEEE--Eeccc--------------hHHHHhHHHHhhccCCceEEEeecCCccEEEEEecCCeEEEEE------ec
Confidence 44455552 11111 111112111 2244456667 7999999999877654432 33
Q ss_pred cccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEE
Q 010206 280 EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 359 (515)
Q Consensus 280 ~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 359 (515)
..|.+.|.++.++.+- ..|.+++.|+.+..|+....... +.+.. -...+.+++.+|||..+++
T Consensus 99 ~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~~----~~~~~------------~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 99 DKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVII----RIWKE------------QKPLVSSLCISPDGKILLT 161 (541)
T ss_pred CCCCCcceeeeccccc-CceEecCCceeEEEEecccceee----eeecc------------CCCccceEEEcCCCCEEEe
Confidence 5689999999999887 79999999999999999887653 22332 2256889999999999999
Q ss_pred EcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCC-----CCEEEE-ecCCCcEEEEecCC
Q 010206 360 RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD-----GGRVAT-GSYSNLFRVFGCSE 430 (515)
Q Consensus 360 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~s-~s~dg~i~iw~~~~ 430 (515)
++. .|++||+.+ ++.+.+|.+|...++ ++.|..+ |.++.+ ...+..+.+|-+..
T Consensus 162 as~-~ik~~~~~~-kevv~~ftgh~s~v~---------------t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 162 ASR-QIKVLDIET-KEVVITFTGHGSPVR---------------TLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ccc-eEEEEEccC-ceEEEEecCCCcceE---------------EEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 885 999999997 999999999998754 6666665 666654 44566677887654
No 260
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.20 E-value=5.2e-07 Score=92.96 Aligned_cols=387 Identities=11% Similarity=0.108 Sum_probs=195.9
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccC--cc-cccccccCCccceeeeecccCCCcc------cc
Q 010206 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRD--LE-MMDYSMSRHPEFRYKTEFQSHEPEF------DY 105 (515)
Q Consensus 35 ~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~h~~~~------~~ 105 (515)
...|.|++||||+..||..+.+|+|.+....=.......... +. ....++.|.. -.+.|+|..... ++
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGk---KeTQF~Gs~gK~aa~~~~~p 196 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGK---KETQFHGSAGKAAARQLRDP 196 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCc---ccCccCcchhhhhhhhccCC
Confidence 458999999999999999999998887653211100000000 00 0000111111 111222221110 00
Q ss_pred c------ccccccceeEEEEEeecCCCcEEEeeeC------CCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCc
Q 010206 106 L------KSLEIEEKINKIRWCQSANSALYLLSTN------DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS 173 (515)
Q Consensus 106 ~------~~~~~~~~v~~l~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (515)
. ..+.....-..|+| ..||.++++.+. -+.+++|+-+ |.+....+.. .|-
T Consensus 197 ~~~~~d~~~~s~dd~~~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v--------~gL------- 258 (928)
T PF04762_consen 197 TVPKVDEGKLSWDDGRVRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPV--------DGL------- 258 (928)
T ss_pred CCCccccCccccCCCceEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccC--------CCc-------
Confidence 0 00112345678999 889999999764 2689999876 5544433311 011
Q ss_pred CCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-
Q 010206 174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA- 252 (515)
Q Consensus 174 ~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~- 252 (515)
...++|.|.|..+...... .....|.+|. ..+-.-++.... .......|..+.|++|+..|+..
T Consensus 259 e~~l~WrPsG~lIA~~q~~---------~~~~~VvFfE-----rNGLrhgeF~l~-~~~~~~~v~~l~Wn~ds~iLAv~~ 323 (928)
T PF04762_consen 259 EGALSWRPSGNLIASSQRL---------PDRHDVVFFE-----RNGLRHGEFTLR-FDPEEEKVIELAWNSDSEILAVWL 323 (928)
T ss_pred cCCccCCCCCCEEEEEEEc---------CCCcEEEEEe-----cCCcEeeeEecC-CCCCCceeeEEEECCCCCEEEEEe
Confidence 1178999999987322110 1123444444 222111111111 12345678999999999999997
Q ss_pred CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccc--------ccc-
Q 010206 253 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD--------THS- 323 (515)
Q Consensus 253 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~--------~~~- 323 (515)
.|. |.+|-...-....+.. + .+. ....+..+.|+|..+..|...+.+|.+..+++.-..... ...
T Consensus 324 ~~~-vqLWt~~NYHWYLKqe-i---~~~-~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~va 397 (928)
T PF04762_consen 324 EDR-VQLWTRSNYHWYLKQE-I---RFS-SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVA 397 (928)
T ss_pred cCC-ceEEEeeCCEEEEEEE-E---Ecc-CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEE
Confidence 444 9999876433221100 0 111 233345599999877788888887777665543211100 001
Q ss_pred ---------ceeeeccCCCcccc-ccccccceeEEEEccCCCEEEE-EcCCeEEEEEeeCCCCC-------eeeEeeecc
Q 010206 324 ---------KLFEEQEAPGTRSF-FTEIIASISDIKFARNGRHILS-RDYMTLKLWDINMDSGP-------VATFQVHEH 385 (515)
Q Consensus 324 ---------~~~~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~s-~~~~~i~iwd~~~~~~~-------~~~~~~~~~ 385 (515)
..|.....|.+... --....+|.+++|++++..+++ -++|.|.+|........ ...+.....
T Consensus 398 VIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (928)
T PF04762_consen 398 VIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSM 477 (928)
T ss_pred EEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccc
Confidence 11111111111111 0112468999999998876666 45699999986542111 011111000
Q ss_pred ccccccccccCCCccceeeEEEcCCCCEEEEecCC---CcEEEEecCCCCcc--eeeeccCCCceeeEEECCCCCeeEee
Q 010206 386 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAE--STTLEASKNPMRRQVQTPSRPSRPLG 460 (515)
Q Consensus 386 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d---g~i~iw~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~ 460 (515)
. .. ...........++|..+..+++....+ ..+.++++...... ......-...+..+...+....++.-
T Consensus 478 ~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 552 (928)
T PF04762_consen 478 D---IS--DSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQ 552 (928)
T ss_pred c---cc--ccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEE
Confidence 0 00 000011123478888777776655543 67888887433211 12222233444444445554434555
Q ss_pred cCCCeEEE
Q 010206 461 SLSGVVRR 468 (515)
Q Consensus 461 ~~d~~v~l 468 (515)
..+|.+..
T Consensus 553 ~~~G~v~~ 560 (928)
T PF04762_consen 553 TNDGKVFQ 560 (928)
T ss_pred ECCCEEEE
Confidence 55776665
No 261
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.20 E-value=1.6e-09 Score=90.38 Aligned_cols=158 Identities=12% Similarity=0.064 Sum_probs=112.5
Q ss_pred eEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCc
Q 010206 237 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 315 (515)
Q Consensus 237 v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~ 315 (515)
..++.|++.+..++++ ++|.+.+-+....... +-+..+.|..++....|+...++++.+|+.|+.+..||+|.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le------~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~ 197 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLE------KVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRI 197 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeee------ecccccccceeeeeeecccCCCceEEecCCCceEEEEEecC
Confidence 4577889999999999 8999885544322211 11256789999999999988889999999999999999993
Q ss_pred ccccccccceeeeccCCCccccccccccceeEEEEcc-CCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccccccccc
Q 010206 316 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDL 393 (515)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 393 (515)
.+. ..|.. .+-|...|.++.-+| .+.++++|++ ..|++||.++-++++..-....
T Consensus 198 p~~-----~i~~n---------~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~G--------- 254 (339)
T KOG0280|consen 198 PKT-----FIWHN---------SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGG--------- 254 (339)
T ss_pred Ccc-----eeeec---------ceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcccc---------
Confidence 221 11111 244778899999886 6889999987 8999999996577765543332
Q ss_pred ccCCCccceeeEEEcCCC--CEEEEecCCCcEEEEecCCC
Q 010206 394 YENDSIFDKFECCLSGDG--GRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 394 ~~~~~~~~v~~~~~s~~~--~~l~s~s~dg~i~iw~~~~~ 431 (515)
+|+.+.++|.- +.|+++-.+| .+|-+.+.+
T Consensus 255 -------GVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~ 286 (339)
T KOG0280|consen 255 -------GVWRIKHHPEIFHRLLAACMHNG-AKILDSSDK 286 (339)
T ss_pred -------ceEEEEecchhhhHHHHHHHhcC-ceEEEeccc
Confidence 26788888853 3455555544 566666554
No 262
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=4.1e-09 Score=95.81 Aligned_cols=128 Identities=16% Similarity=0.235 Sum_probs=93.8
Q ss_pred CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEE--EEecCCeEEEEecCcccccccccceeeeccCC
Q 010206 255 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA--YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 332 (515)
Q Consensus 255 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~--~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 332 (515)
.++++.+++...... .+ ...++|+++.|+|++ +.|+ .|-.--.+.+||++-.-. ++-
T Consensus 251 q~Lyll~t~g~s~~V--------~L-~k~GPVhdv~W~~s~-~EF~VvyGfMPAkvtifnlr~~~v-------~df---- 309 (566)
T KOG2315|consen 251 QTLYLLATQGESVSV--------PL-LKEGPVHDVTWSPSG-REFAVVYGFMPAKVTIFNLRGKPV-------FDF---- 309 (566)
T ss_pred ceEEEEEecCceEEE--------ec-CCCCCceEEEECCCC-CEEEEEEecccceEEEEcCCCCEe-------EeC----
Confidence 467777776222221 11 137899999999998 5544 455578899999875422 121
Q ss_pred CccccccccccceeEEEEccCCCEEEEEc---C-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEc
Q 010206 333 GTRSFFTEIIASISDIKFARNGRHILSRD---Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 408 (515)
Q Consensus 333 ~~~~~~~~~~~~i~~~~~s~~~~~l~s~~---~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 408 (515)
..++-+++-|+|.|++|+.++ - |.+.|||+.+ .+++..+...... -+.|+
T Consensus 310 --------~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~~~a~~tt-----------------~~eW~ 363 (566)
T KOG2315|consen 310 --------PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN-RKLIAKFKAANTT-----------------VFEWS 363 (566)
T ss_pred --------CCCCccceEECCCCCEEEEeecCCCCCceEEEeccc-hhhccccccCCce-----------------EEEEc
Confidence 126778899999999988753 2 9999999997 8888877765533 68999
Q ss_pred CCCCEEEEecC------CCcEEEEecC
Q 010206 409 GDGGRVATGSY------SNLFRVFGCS 429 (515)
Q Consensus 409 ~~~~~l~s~s~------dg~i~iw~~~ 429 (515)
|||++++|++. |+.++||+..
T Consensus 364 PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 364 PDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred CCCcEEEEEeccccEEecCCeEEEEec
Confidence 99999998874 7899999986
No 263
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.19 E-value=2.1e-09 Score=91.71 Aligned_cols=206 Identities=12% Similarity=0.200 Sum_probs=138.7
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccc
Q 010206 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (515)
-..+++++++.++-..|+.|-.+|++.-+.+...-. ...+...+..|. .
T Consensus 67 mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfn-------------------km~~~r~~~~h~------------~ 115 (404)
T KOG1409|consen 67 MPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFN-------------------KMTFLKDYLAHQ------------A 115 (404)
T ss_pred CCCCceEeeeeccceEEEEEEecceEEEEEhhhhhh-------------------hcchhhhhhhhh------------c
Confidence 456889999999999999999999998887653211 111333455565 8
Q ss_pred eeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccC
Q 010206 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (515)
Q Consensus 114 ~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~ 193 (515)
.|..+-|+ ...+.+++.+.|..+.---.+.+....-..+... ++.+.+.-.
T Consensus 116 ~v~~~if~--~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~----------------~t~~~~d~~----------- 166 (404)
T KOG1409|consen 116 RVSAIVFS--LTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP----------------ASALQFDAL----------- 166 (404)
T ss_pred ceeeEEec--CCceeEEEeccccceEEEeeccCCcccceEeecc----------------CCCCceeeE-----------
Confidence 89999994 4556899999998775444444432211111100 001111111
Q ss_pred CCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccccee
Q 010206 194 SNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 272 (515)
Q Consensus 194 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 272 (515)
+.+.|...|.+.+..+ ..... .......+|.+.+.+++|.+....|.+| .|..+.+||+--.+...
T Consensus 167 ---~~fvGd~~gqvt~lr~--~~~~~-----~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~--- 233 (404)
T KOG1409|consen 167 ---YAFVGDHSGQITMLKL--EQNGC-----QLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTA--- 233 (404)
T ss_pred ---EEEecccccceEEEEE--eecCC-----ceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCccee---
Confidence 2266777777766542 11111 1112247999999999999999999999 89999999996433221
Q ss_pred cccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCccc
Q 010206 273 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 317 (515)
Q Consensus 273 ~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~ 317 (515)
..+.+|...|..+...+.- +.+.+++.||.|.+||+....
T Consensus 234 ----~el~gh~~kV~~l~~~~~t-~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 234 ----YELQGHNDKVQALSYAQHT-RQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred ----eeeccchhhhhhhhhhhhh-eeeeeccCCCeEEEEecccee
Confidence 1567889999999888776 899999999999999997643
No 264
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.19 E-value=1.4e-09 Score=105.96 Aligned_cols=184 Identities=14% Similarity=0.024 Sum_probs=133.5
Q ss_pred cEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCC
Q 010206 297 NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSG 375 (515)
Q Consensus 297 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~ 375 (515)
..++.++.+..+-+||...+....+....... .-....-+.++++.-++++|+- +.|.+|+... .+
T Consensus 100 k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~------------~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~-dn 166 (967)
T KOG0974|consen 100 KKIALVTSRNSLLIRDSKNSSVLSKIQSDERC------------TLYSSLIIGDSAEELYIASGSVFGEIIVWKPHE-DN 166 (967)
T ss_pred ceEEEEEcCceEEEEecccCceehhcCCCceE------------EEEeEEEEeccCcEEEEEeccccccEEEEeccc-cC
Confidence 57888888889999998776543321111000 0012333445667778888887 9999999984 33
Q ss_pred CeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCC
Q 010206 376 PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP 455 (515)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 455 (515)
....+.+|++. ++++.++.||+++++.|+|.++++|++.+.+....+.=+|...+.++.+.|+
T Consensus 167 ~p~~l~GHeG~---------------iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-- 229 (967)
T KOG0974|consen 167 KPIRLKGHEGS---------------IFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-- 229 (967)
T ss_pred CcceecccCCc---------------eEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--
Confidence 33368888876 5699999999999999999999999999987666677899999999999999
Q ss_pred eeEeecCCCeEEEecCCCCCccccCCccccc-cCCeeEEEEcCCCCEEEEEcCCc-EEEEe
Q 010206 456 SRPLGSLSGVVRRVKGADNSALDANGNAFDF-SMKLLHLAWHPSENSIACAASNS-LYMYY 514 (515)
Q Consensus 456 ~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~la~~~~~~-~~i~~ 514 (515)
.+++++.|.+.+++ .....++. ...+| ...|..++.+++...+++++.|+ +.+|+
T Consensus 230 ~i~t~gedctcrvW---~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 230 RIITVGEDCTCRVW---GVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred eeEEeccceEEEEE---ecccceeh-hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 99999999999993 11111111 22223 45789999999888888777554 66653
No 265
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=1.2e-08 Score=96.86 Aligned_cols=204 Identities=11% Similarity=0.036 Sum_probs=112.4
Q ss_pred cEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCc--EEEEEecCC--eEEEEecCcccccccccceeeeccC
Q 010206 256 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCN--MLAYSSSKG--SIRLIDMRQSALCDTHSKLFEEQEA 331 (515)
Q Consensus 256 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~--~l~~~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~ 331 (515)
.|.+.|....+.. .+......+.+-+|+|||.. ++++...+| .|.+.++..++.. .+
T Consensus 166 ~l~~~d~dG~~~~---------~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~--~l-------- 226 (428)
T PRK01029 166 ELWSVDYDGQNLR---------PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK--KI-------- 226 (428)
T ss_pred eEEEEcCCCCCce---------EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce--Ee--------
Confidence 5666666533321 23334555678899999833 222444444 5777787766421 01
Q ss_pred CCccccccccccceeEEEEccCCCEEEEEcC--C--eE--EEEEeeCC--CCCeeeEeeeccccccccccccCCCcccee
Q 010206 332 PGTRSFFTEIIASISDIKFARNGRHILSRDY--M--TL--KLWDINMD--SGPVATFQVHEHLRPKLCDLYENDSIFDKF 403 (515)
Q Consensus 332 ~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~--~i--~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 403 (515)
....+......|||||+.|+...+ | .+ .+|++... +.+.......... ..
T Consensus 227 -------t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~---------------~~ 284 (428)
T PRK01029 227 -------LALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGT---------------QG 284 (428)
T ss_pred -------ecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCC---------------cC
Confidence 111133456799999998886432 2 33 33665531 1222211111111 12
Q ss_pred eEEEcCCCCEEEEec-CCCcEEEE--ecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCC-C--eEEE--ecCCCCC
Q 010206 404 ECCLSGDGGRVATGS-YSNLFRVF--GCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS-G--VVRR--VKGADNS 475 (515)
Q Consensus 404 ~~~~s~~~~~l~s~s-~dg~i~iw--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-~--~v~l--~~~~~~~ 475 (515)
..+|+|||+.|+..+ .+|...+| ++...+.....+..+...+....|+|+|+.|+..+.+ + .+.+ .++.+..
T Consensus 285 ~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~ 364 (428)
T PRK01029 285 NPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY 364 (428)
T ss_pred CeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE
Confidence 679999999887655 46655555 4432222223444444566788999999998876543 3 3444 2222221
Q ss_pred ccccCCccccccCCeeEEEEcCCCCEEEEEc
Q 010206 476 ALDANGNAFDFSMKLLHLAWHPSENSIACAA 506 (515)
Q Consensus 476 ~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~ 506 (515)
.+ ......+...+|+|||+.|+..+
T Consensus 365 --~L----t~~~~~~~~p~wSpDG~~L~f~~ 389 (428)
T PRK01029 365 --QL----TTSPENKESPSWAIDSLHLVYSA 389 (428)
T ss_pred --Ec----cCCCCCccceEECCCCCEEEEEE
Confidence 11 11123567899999999988543
No 266
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.16 E-value=3.8e-07 Score=81.68 Aligned_cols=223 Identities=12% Similarity=0.069 Sum_probs=140.1
Q ss_pred EecCCCCEEEEeCCCcEEEEeCCCCCcccceecccC---ccccccCCceEEEE-EecCCCcEEEEEecCCeEEEEecCcc
Q 010206 241 SNNSDGETFISADDLRINLWNLEISNQSFNIVDVKP---ANMEDLTEVITSAE-FHPTHCNMLAYSSSKGSIRLIDMRQS 316 (515)
Q Consensus 241 ~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~i~~i~-~~p~~~~~l~~~~~dg~i~~wd~~~~ 316 (515)
..+.||+.++-...|.|.+||..+.+...--+++.. ..+.....+..-+. |++-.+.+++..+. |...+.+.-.+
T Consensus 273 ~~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~ 351 (668)
T COG4946 273 NANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG 351 (668)
T ss_pred ccCCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC
Confidence 346799999998889999999986653321111110 00111111111111 33332266666554 55666655443
Q ss_pred cccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-C-CeEEEEEeeCCCCCeeeEeeeccccccccccc
Q 010206 317 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLY 394 (515)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (515)
..+ --+|.+.|.-..+..+++-++.|. | ..+-|+|... ..++.+...-+.
T Consensus 352 ~~i------------------qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~--~e~kr~e~~lg~-------- 403 (668)
T COG4946 352 YSI------------------QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDG--GEVKRIEKDLGN-------- 403 (668)
T ss_pred eeE------------------EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCC--ceEEEeeCCccc--------
Confidence 321 123446688888887777777775 4 4999999984 444444433322
Q ss_pred cCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCe----EEE--
Q 010206 395 ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV----VRR-- 468 (515)
Q Consensus 395 ~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~----v~l-- 468 (515)
|.++..+++|++++.+.....+.+.|+.++... ..-+....-+....|+|+++++|.+--+|. |++
T Consensus 404 -------I~av~vs~dGK~~vvaNdr~el~vididngnv~-~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklyd 475 (668)
T COG4946 404 -------IEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR-LIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYD 475 (668)
T ss_pred -------eEEEEEcCCCcEEEEEcCceEEEEEEecCCCee-EecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEe
Confidence 559999999999999999999999999998433 333445567899999999999999887764 444
Q ss_pred ecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEc
Q 010206 469 VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 506 (515)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~ 506 (515)
..+.+.... ....+.=.+-||.||+++|..-+
T Consensus 476 m~~~Kiy~v------TT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 476 MDGGKIYDV------TTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred cCCCeEEEe------cCCcccccCcccCCCCcEEEEEe
Confidence 334333311 01123336789999999987544
No 267
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.15 E-value=4e-09 Score=90.02 Aligned_cols=195 Identities=9% Similarity=0.038 Sum_probs=142.3
Q ss_pred CCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEec
Q 010206 235 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 313 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~ 313 (515)
.+++++.+.++...|+.| +.|++.-+.+...-.... .++....|...+..+-|+-.. ..+++.+.|..+.---.
T Consensus 69 ~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~----~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~ 143 (404)
T KOG1409|consen 69 SPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMT----FLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCT 143 (404)
T ss_pred CCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcc----hhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEee
Confidence 567889999999999999 899999887653322211 113556799999999999876 79999999988776555
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeC-CCCCeeeEeeecccccccc
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM-DSGPVATFQVHEHLRPKLC 391 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~ 391 (515)
+.+..+.. +.++. .-+++.+.-. +...|+. |.|.+-.+.. .-.++.++.+|...
T Consensus 144 e~~~~lg~--Y~~~~---------------~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~----- 199 (404)
T KOG1409|consen 144 ESGNRLGG--YNFET---------------PASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGE----- 199 (404)
T ss_pred ccCCcccc--eEeec---------------cCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccc-----
Confidence 55543321 11111 1112222111 4445654 7777766643 24456777777655
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 392 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 392 ~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+.+++|.+..+.|++|..|..+.+||+.-.......+.+|...|..+...+--+.+.+++.||.|.+
T Consensus 200 ----------~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~ 266 (404)
T KOG1409|consen 200 ----------VTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVV 266 (404)
T ss_pred ----------eEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEE
Confidence 5599999999999999999999999998776667899999999999999888899999999999988
No 268
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=1.6e-09 Score=101.17 Aligned_cols=236 Identities=10% Similarity=0.125 Sum_probs=158.8
Q ss_pred cCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecc-------cCccccccCCceEEEEEecCCCcEEEEEecC
Q 010206 234 DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV-------KPANMEDLTEVITSAEFHPTHCNMLAYSSSK 305 (515)
Q Consensus 234 ~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d 305 (515)
.....|++|+....++++| .||.+++..+.+...-.+...+ -.+++++|++.|.-+.|+.+. +.|.+...+
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-QKLTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN-QKLTTSDTS 92 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-ccccccCCC
Confidence 4567899999999999998 8999999988765432221110 014689999999999999987 889999999
Q ss_pred CeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEE-cCCeEEEEEeeCCCCCeeeEeeec
Q 010206 306 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHE 384 (515)
Q Consensus 306 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~~~~i~iwd~~~~~~~~~~~~~~~ 384 (515)
|.|.+|-+-.+.-+.+.+.. . ..+.|.+++|..||..+... .||.|.+=.++-+.---+.+++..
T Consensus 93 GlIiVWmlykgsW~EEMiNn---R-----------nKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~ 158 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINN---R-----------NKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQL 158 (1189)
T ss_pred ceEEEEeeecccHHHHHhhC---c-----------CccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchhe
Confidence 99999999888755331111 0 12568999999999988875 457777666652111112222222
Q ss_pred cccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcce----eeec--c----CCCceeeEEE----
Q 010206 385 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES----TTLE--A----SKNPMRRQVQ---- 450 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~----~~~~--~----~~~~v~~~~~---- 450 (515)
- ..+.|++|.+.+..+-..|.+++||....-... .... + ....+..+.|
T Consensus 159 l-----------------~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~ 221 (1189)
T KOG2041|consen 159 L-----------------AHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGP 221 (1189)
T ss_pred c-----------------cceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCc
Confidence 1 157899999988888889999999976421100 1010 0 0011223332
Q ss_pred ----CCCCCeeEeecCCCeEEEec-CCCCCccccCCccccccCCeeEEEEcCCCCEEEEEc
Q 010206 451 ----TPSRPSRPLGSLSGVVRRVK-GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 506 (515)
Q Consensus 451 ----~~~~~~l~s~~~d~~v~l~~-~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~ 506 (515)
.|+.+.|+.+-..|.+.+.. -..+.+ ..++..-.|....|+++|..||+++
T Consensus 222 ~~~v~pdrP~lavcy~nGr~QiMR~eND~~P-----vv~dtgm~~vgakWnh~G~vLAvcG 277 (1189)
T KOG2041|consen 222 YQPVPPDRPRLAVCYANGRMQIMRSENDPEP-----VVVDTGMKIVGAKWNHNGAVLAVCG 277 (1189)
T ss_pred cccCCCCCCEEEEEEcCceehhhhhcCCCCC-----eEEecccEeecceecCCCcEEEEcc
Confidence 46899999999999999822 222221 1223346789999999999999776
No 269
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.13 E-value=6.4e-10 Score=104.11 Aligned_cols=290 Identities=14% Similarity=0.225 Sum_probs=182.9
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
+.-.+++.++.++|.|+-+|.++.-| +.+-|+...-. ..+++..+..
T Consensus 21 l~v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~-------------------ppr~l~h~tp------------- 67 (1081)
T KOG0309|consen 21 LKVDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFT-------------------PPRWLHHITP------------- 67 (1081)
T ss_pred EEecCcccceeeccccchhhhhhhcC-eEEEeccCCCC-------------------CceeeeccCc-------------
Confidence 45567899999999999999999887 55667654321 1112222222
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
-.|-.+.|+|.+...+-++......-.+|++...
T Consensus 68 -w~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s--------------------------------------------- 101 (1081)
T KOG0309|consen 68 -WQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS--------------------------------------------- 101 (1081)
T ss_pred -chhcceecccCCCCceeEEecCcchhhhhhhhcC---------------------------------------------
Confidence 2377788888766556666555555567775432
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCC-EEEEe-CCCcEEEEeCCCCCccc
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
.+..|.+ ++.+|...|+.+.|+|+.. .++++ -|-.+..||+++....+
T Consensus 102 -----------s~~aIef-------------------~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ 151 (1081)
T KOG0309|consen 102 -----------SSNAIEF-------------------VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPF 151 (1081)
T ss_pred -----------CccceEE-------------------EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcce
Confidence 1222221 2478999999999998654 56667 69999999999887665
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
... ..-......++|+-..+..+| .+..+.|++||++.+... ...+++|...|..+.
T Consensus 152 ys~-------~~w~s~asqVkwnyk~p~vla-sshg~~i~vwd~r~gs~p---------------l~s~K~~vs~vn~~~ 208 (1081)
T KOG0309|consen 152 YST-------SSWRSAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTP---------------LCSLKGHVSSVNSID 208 (1081)
T ss_pred eee-------ecccccCceeeecccCcchhh-hccCCceEEEeccCCCcc---------------eEEecccceeeehHH
Confidence 432 222445678999887755555 566778999999987632 223566778899998
Q ss_pred Ecc--CCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCC--EEE---------E
Q 010206 350 FAR--NGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG--RVA---------T 416 (515)
Q Consensus 350 ~s~--~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~---------s 416 (515)
|.. .+..+-+..|++|+.||..+..+.-....... +.++.-++-|-|+ ++. -
T Consensus 209 fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~---------------~piw~~r~~Pfg~g~~~mp~~G~n~v~~ 273 (1081)
T KOG0309|consen 209 FNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTN---------------FPIWRGRYLPFGEGYCIMPMVGGNMVPQ 273 (1081)
T ss_pred HhhhhhhhhcccCCCCceeeecccccccccceecccc---------------CcceeccccccCceeEeccccCCeeeee
Confidence 875 33344445679999999875322211111111 1123334444322 222 1
Q ss_pred ecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCC----------CCeeEeecCCCeEEE
Q 010206 417 GSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS----------RPSRPLGSLSGVVRR 468 (515)
Q Consensus 417 ~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~l~s~~~d~~v~l 468 (515)
---++....|+..++...+.++.+|.+.|....|-.. .-.|++=|.|.++|+
T Consensus 274 ~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrl 335 (1081)
T KOG0309|consen 274 LRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRL 335 (1081)
T ss_pred ccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEe
Confidence 1122334456666666667899999998876665322 126889999999998
No 270
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.13 E-value=4.6e-07 Score=81.14 Aligned_cols=144 Identities=15% Similarity=0.212 Sum_probs=103.4
Q ss_pred cCcCCeEEEEecCCCCEEEEe-CCC-cEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010206 232 AHDYHINSISNNSDGETFISA-DDL-RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 309 (515)
Q Consensus 232 ~~~~~v~~~~~~~~~~~l~s~-~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~ 309 (515)
+|...|.-..+..+++-++.| .|| .+-++|.++++.. .+...-+.|.++..+|+| +.++.+.....|.
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k---------r~e~~lg~I~av~vs~dG-K~~vvaNdr~el~ 426 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK---------RIEKDLGNIEAVKVSPDG-KKVVVANDRFELW 426 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE---------EeeCCccceEEEEEcCCC-cEEEEEcCceEEE
Confidence 455667777777777778888 666 8999999877533 334556889999999999 8899899999999
Q ss_pred EEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEE---cC--CeEEEEEeeCCCCCeeeEeeec
Q 010206 310 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR---DY--MTLKLWDINMDSGPVATFQVHE 384 (515)
Q Consensus 310 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~---~~--~~i~iwd~~~~~~~~~~~~~~~ 384 (515)
+.|+.++... ..+.. -.+-|+.+.|||+++++|-+ +. ..|+++|+.. ++... .....
T Consensus 427 vididngnv~-----~idkS-----------~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~-~Kiy~-vTT~t 488 (668)
T COG4946 427 VIDIDNGNVR-----LIDKS-----------EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG-GKIYD-VTTPT 488 (668)
T ss_pred EEEecCCCee-----Eeccc-----------ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC-CeEEE-ecCCc
Confidence 9999998742 22211 12579999999999999975 22 7899999984 44332 22221
Q ss_pred cccccccccccCCCccceeeEEEcCCCCEEEEec
Q 010206 385 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 418 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s 418 (515)
... ++-+|.||+++|.--+
T Consensus 489 a~D---------------fsPaFD~d~ryLYfLs 507 (668)
T COG4946 489 AYD---------------FSPAFDPDGRYLYFLS 507 (668)
T ss_pred ccc---------------cCcccCCCCcEEEEEe
Confidence 110 2678999999877443
No 271
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.13 E-value=1.3e-09 Score=91.63 Aligned_cols=223 Identities=16% Similarity=0.152 Sum_probs=127.0
Q ss_pred CCeEEEEecCC---CCEEEEeCCCcEEEEeCCCCCcc---------------------------------cceecccCcc
Q 010206 235 YHINSISNNSD---GETFISADDLRINLWNLEISNQS---------------------------------FNIVDVKPAN 278 (515)
Q Consensus 235 ~~v~~~~~~~~---~~~l~s~~d~~i~iwd~~~~~~~---------------------------------~~~~~~~~~~ 278 (515)
..|..+.|..+ ..+|+++.|.+|++|.+...... ..++..+|..
T Consensus 86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r 165 (460)
T COG5170 86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR 165 (460)
T ss_pred HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence 45666776543 44677779999999998654100 0011112211
Q ss_pred --ccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccC--C
Q 010206 279 --MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN--G 354 (515)
Q Consensus 279 --~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~ 354 (515)
...|.--|.++.|+.|. ..++ ...|=.|.+|++.-.... ....+... .-+.....-|++..|+|. .
T Consensus 166 vyaNaH~yhiNSiS~NsD~-et~l-SaDdLrINLWnl~i~D~s---FnIVDiKP-----~nmeeLteVItSaeFhp~~cn 235 (460)
T COG5170 166 VYANAHPYHINSISFNSDK-ETLL-SADDLRINLWNLEIIDGS---FNIVDIKP-----HNMEELTEVITSAEFHPEMCN 235 (460)
T ss_pred eccccceeEeeeeeecCch-heee-eccceeeeeccccccCCc---eEEEeccC-----ccHHHHHHHHhhcccCHhHcc
Confidence 13566778899999886 4555 456778999998653221 11111111 012334457899999994 3
Q ss_pred CEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc
Q 010206 355 RHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 355 ~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
-++++.+.|.|++-|++...-+................-.-...+..|..+.|+++|+++++-+. .+|+|||++..+..
T Consensus 236 ~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~p 314 (460)
T COG5170 236 VFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNP 314 (460)
T ss_pred eEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCC
Confidence 34445566999999998421111111000000000000000111223458999999999998765 58999999987766
Q ss_pred eeeeccCCC------------ce---eeEEECCCCCeeEeecCCCeEEE
Q 010206 435 STTLEASKN------------PM---RRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 435 ~~~~~~~~~------------~v---~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+.+..-|.. .| -.+.++.+.+.+++|+.....-+
T Consensus 315 ikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgi 363 (460)
T COG5170 315 IKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGI 363 (460)
T ss_pred ceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceee
Confidence 666654321 11 25567777777777776544333
No 272
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.12 E-value=5e-07 Score=81.63 Aligned_cols=249 Identities=9% Similarity=0.035 Sum_probs=132.6
Q ss_pred cCCCcEEEeee----------CCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 123 SANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 123 ~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
+++++.++++. .+..|.+||..+.+..........+..... ..+..++++|||+.+
T Consensus 54 spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~--------~~~~~~~ls~dgk~l------ 119 (352)
T TIGR02658 54 ASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG--------TYPWMTSLTPDNKTL------ 119 (352)
T ss_pred CCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc--------CccceEEECCCCCEE------
Confidence 56677777764 478999999999988776665433211110 111167999999988
Q ss_pred CCCCCCCCCC--CcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccc
Q 010206 193 ASNDSSFPPG--GVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFN 270 (515)
Q Consensus 193 ~~~~~~~~~~--~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~ 270 (515)
+... .++.+.+.| +...+. .....- .....-.. .++...++-+.||......+.+.....
T Consensus 120 ------~V~n~~p~~~V~VvD--~~~~kv------v~ei~v--p~~~~vy~-t~e~~~~~~~~Dg~~~~v~~d~~g~~~- 181 (352)
T TIGR02658 120 ------LFYQFSPSPAVGVVD--LEGKAF------VRMMDV--PDCYHIFP-TANDTFFMHCRDGSLAKVGYGTKGNPK- 181 (352)
T ss_pred ------EEecCCCCCEEEEEE--CCCCcE------EEEEeC--CCCcEEEE-ecCCccEEEeecCceEEEEecCCCceE-
Confidence 5333 367888888 332211 111000 01111111 112222222333333333222222110
Q ss_pred eecccCccccc-----cCCceEEEEEec-CCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccc
Q 010206 271 IVDVKPANMED-----LTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 344 (515)
Q Consensus 271 ~~~~~~~~~~~-----~~~~i~~i~~~p-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (515)
.... ..+.. ...+ .|.+ ++ ..+..... |.|.+.|+........ ..+......... -.-..+.
T Consensus 182 ~~~~--~vf~~~~~~v~~rP----~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~--~~~~~~~~~~~~--~~wrP~g 249 (352)
T TIGR02658 182 IKPT--EVFHPEDEYLINHP----AYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFL--PAIEAFTEAEKA--DGWRPGG 249 (352)
T ss_pred Eeee--eeecCCccccccCC----ceEcCCC-cEEEEecC-CeEEEEecCCCcceec--ceeeeccccccc--cccCCCc
Confidence 0000 00000 0111 4566 66 56655555 9999999765432211 111110000000 0001234
Q ss_pred eeEEEEccCCCEEEEEc---------C--CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCC-
Q 010206 345 ISDIKFARNGRHILSRD---------Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG- 412 (515)
Q Consensus 345 i~~~~~s~~~~~l~s~~---------~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~- 412 (515)
+.-++++|+++.++... + +.|.++|..+ .+.+..+..... ++.++++||++
T Consensus 250 ~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t-~kvi~~i~vG~~----------------~~~iavS~Dgkp 312 (352)
T TIGR02658 250 WQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT-GKRLRKIELGHE----------------IDSINVSQDAKP 312 (352)
T ss_pred ceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC-CeEEEEEeCCCc----------------eeeEEECCCCCe
Confidence 45599999999888732 1 5899999987 777776653322 34899999999
Q ss_pred EEEEec-CCCcEEEEecCCCC
Q 010206 413 RVATGS-YSNLFRVFGCSEGS 432 (515)
Q Consensus 413 ~l~s~s-~dg~i~iw~~~~~~ 432 (515)
+|++.. .++.|.++|..+++
T Consensus 313 ~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 313 LLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred EEEEeCCCCCcEEEEECcCCe
Confidence 777665 67889999999874
No 273
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.12 E-value=9.7e-10 Score=112.59 Aligned_cols=202 Identities=18% Similarity=0.307 Sum_probs=143.4
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
....+-..|.++.=+|...+-+||+.||.|++|....++.+ ..++.-.
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v-----------------------~~~rt~g--------- 2250 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQV-----------------------VCFRTAG--------- 2250 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeE-----------------------EEeeccC---------
Confidence 34556788999999999999999999999999999877643 1222111
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..+|+.+.|+ ..|..+..+..||.+.+|.+.... ...
T Consensus 2251 --~s~vtr~~f~--~qGnk~~i~d~dg~l~l~q~~pk~---~~s------------------------------------ 2287 (2439)
T KOG1064|consen 2251 --NSRVTRSRFN--HQGNKFGIVDGDGDLSLWQASPKP---YTS------------------------------------ 2287 (2439)
T ss_pred --cchhhhhhhc--ccCCceeeeccCCceeecccCCcc---eec------------------------------------
Confidence 1568899995 556689999999999999876211 000
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe----CCCcEEEEeCCCC
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA----DDLRINLWNLEIS 265 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~----~d~~i~iwd~~~~ 265 (515)
-+.|.....++.|-. ..++++ +++.+.+||....
T Consensus 2288 ----------------------------------------~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~ 2325 (2439)
T KOG1064|consen 2288 ----------------------------------------WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLP 2325 (2439)
T ss_pred ----------------------------------------cccCCccccceeeee--hhhhccccCCCCCcccchhcccC
Confidence 123445555555544 445553 4889999997543
Q ss_pred CcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccce
Q 010206 266 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 345 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 345 (515)
.... . .-..|.+.++++++.|.. ++|++|+.+|.|++||++..++... .
T Consensus 2326 ~~~s-~------v~~~H~~gaT~l~~~P~~-qllisggr~G~v~l~D~rqrql~h~-----------------------~ 2374 (2439)
T KOG1064|consen 2326 PMNS-L------VHTCHDGGATVLAYAPKH-QLLISGGRKGEVCLFDIRQRQLRHT-----------------------F 2374 (2439)
T ss_pred cccc-e------eeeecCCCceEEEEcCcc-eEEEecCCcCcEEEeehHHHHHHHH-----------------------h
Confidence 3221 1 116799999999999998 8999999999999999998876432 1
Q ss_pred eEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeee
Q 010206 346 SDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVH 383 (515)
Q Consensus 346 ~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~ 383 (515)
.. +. ...++++|+. |.++||++.. ...+.++...
T Consensus 2375 ~~--~~-~~~~f~~~ss~g~ikIw~~s~-~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2375 QA--LD-TREYFVTGSSEGNIKIWRLSE-FGLLHTFPSE 2409 (2439)
T ss_pred hh--hh-hhheeeccCcccceEEEEccc-cchhhcCchh
Confidence 11 33 4568888876 9999999986 5666666543
No 274
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=1.1e-07 Score=86.60 Aligned_cols=288 Identities=15% Similarity=0.196 Sum_probs=158.8
Q ss_pred cceEEEEECCCCCeEEeecC-----------CCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccc
Q 010206 36 DIISAIEFDKSGDHLATGDR-----------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFD 104 (515)
Q Consensus 36 ~~v~~v~~s~~g~~lasg~~-----------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 104 (515)
-.|.-+.|||..+||+|=+. ...++|||+.+|.....+ ..+.+..
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF--------------------~~~~~~~---- 305 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSF--------------------PVIKSPY---- 305 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcce--------------------eccCCCc----
Confidence 35788999999999998652 247999999998754111 0011111
Q ss_pred ccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCC
Q 010206 105 YLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (515)
Q Consensus 105 ~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~ 184 (515)
..-.-..| +.|+++++--.. ..|.||+...-.+........ ..|. ...|+|.+.
T Consensus 306 --------~~WP~frW--S~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki--------~gIr-------~FswsP~~~ 359 (698)
T KOG2314|consen 306 --------LKWPIFRW--SHDDKYFARMTG-NSISIYETPSFMLLDKKSLKI--------SGIR-------DFSWSPTSN 359 (698)
T ss_pred --------cccceEEe--ccCCceeEEecc-ceEEEEecCceeeecccccCC--------cccc-------CcccCCCcc
Confidence 11223567 566777777665 568999876643322222221 1222 567777776
Q ss_pred ccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-C----C-----
Q 010206 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D----D----- 254 (515)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~----d----- 254 (515)
.|.. +..+.-.....-+.+.+.. .+..+.. .-|.-.=..+.|-.+|.+|+.- + .
T Consensus 360 llAY----wtpe~~~~parvtL~evPs-----------~~~iRt~-nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~ 423 (698)
T KOG2314|consen 360 LLAY----WTPETNNIPARVTLMEVPS-----------KREIRTK-NLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQ 423 (698)
T ss_pred eEEE----EcccccCCcceEEEEecCc-----------cceeeec-cceeeeccEEEeccCCcEEEEEEEeeccccccce
Confidence 6521 0000000000001111100 0111110 0111111245677788888863 1 1
Q ss_pred -CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEec---CCeEEEEecCcccccccccceeeecc
Q 010206 255 -LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS---KGSIRLIDMRQSALCDTHSKLFEEQE 330 (515)
Q Consensus 255 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~ 330 (515)
..+.|+.++........+ .....|...+|-|.| +.+++-+. ..++.+|.+++.....+.++.++.
T Consensus 424 f~n~eIfrireKdIpve~v--------elke~vi~FaWEP~g-dkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-- 492 (698)
T KOG2314|consen 424 FSNLEIFRIREKDIPVEVV--------ELKESVIAFAWEPHG-DKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-- 492 (698)
T ss_pred EeeEEEEEeeccCCCceee--------ecchheeeeeeccCC-CeEEEEEccccccceeEEEeecCCCchhhhhhhcc--
Confidence 134566666444433322 246778999999999 55544332 457888988753322233333332
Q ss_pred CCCccccccccccceeEEEEccCCCEEEEE---cC-CeEEEEEeeCCCCCeeeE-eeeccccccccccccCCCccceeeE
Q 010206 331 APGTRSFFTEIIASISDIKFARNGRHILSR---DY-MTLKLWDINMDSGPVATF-QVHEHLRPKLCDLYENDSIFDKFEC 405 (515)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~---~~-~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~ 405 (515)
...+.+.|+|.|++++.+ +. |.+.++|+.. .....+- ..|.. .+.+
T Consensus 493 ------------~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~-a~~k~~~~~eh~~----------------at~v 543 (698)
T KOG2314|consen 493 ------------KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY-ADLKDTASPEHFA----------------ATEV 543 (698)
T ss_pred ------------cccceEEEcCCCcEEEEEEecccccceEEEecch-hhhhhccCccccc----------------cccc
Confidence 246789999999999975 33 8999999874 1111111 11111 2378
Q ss_pred EEcCCCCEEEEecC------CCcEEEEecC
Q 010206 406 CLSGDGGRVATGSY------SNLFRVFGCS 429 (515)
Q Consensus 406 ~~s~~~~~l~s~s~------dg~i~iw~~~ 429 (515)
.|.|.|+|++|++. |..-++|+..
T Consensus 544 eWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 544 EWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred eECCCCCEEEEeeehhhhccccceEEEEee
Confidence 99999999999875 4456677776
No 275
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.11 E-value=3.2e-08 Score=93.57 Aligned_cols=407 Identities=12% Similarity=0.053 Sum_probs=196.3
Q ss_pred ccccceEEEEECCC------C------CeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCC
Q 010206 33 QEVDIISAIEFDKS------G------DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHE 100 (515)
Q Consensus 33 ~h~~~v~~v~~s~~------g------~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 100 (515)
.|+..|+.+.|+|- + -+||+++..|.|.+||...+..+ ..++.|.
T Consensus 53 ~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~-----------------------~~l~~~~ 109 (1062)
T KOG1912|consen 53 LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVI-----------------------NWLSHSN 109 (1062)
T ss_pred cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhh-----------------------hhhcCCC
Confidence 57899999999982 1 26888999999999998766532 3355555
Q ss_pred CcccccccccccceeEEEEEeecCCCc--EEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCce
Q 010206 101 PEFDYLKSLEIEEKINKIRWCQSANSA--LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS 178 (515)
Q Consensus 101 ~~~~~~~~~~~~~~v~~l~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 178 (515)
.++..++|.+..+.. .|++-....++.+|+..+|+............. .+.
T Consensus 110 ------------~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs---------------~f~ 162 (1062)
T KOG1912|consen 110 ------------DSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILS---------------CFR 162 (1062)
T ss_pred ------------cchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCccee---------------eee
Confidence 779999998865543 455557778999999999986655443322111 111
Q ss_pred eec-CCCccccc--ccc-CCCCCCCCCCCcccEEeeeeeecccccccccceeeeee--ccCcC---------CeEEEEec
Q 010206 179 YMA-NGGCGERN--FGC-ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYA--HAHDY---------HINSISNN 243 (515)
Q Consensus 179 ~~~-~g~~l~~~--~~~-~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~---------~v~~~~~~ 243 (515)
+.| |.+.+.++ .+. .+-+++...-.++..+.+. +........ ...+... ..+.. ....++|+
T Consensus 163 ~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~q--I~sd~Sdl~-~lere~at~ns~ts~~~sa~fity~a~faf~ 239 (1062)
T KOG1912|consen 163 VDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQ--ITSDHSDLA-HLERETATGNSTTSTPASAYFITYCAQFAFS 239 (1062)
T ss_pred eCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEE--EecCccchh-hhhhhhhccccccCCCcchhHHHHHHhhhcC
Confidence 222 11111000 000 0000111111222222222 111100000 0000000 00000 01235667
Q ss_pred CCCCEEEE-eCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCC-cEEEEEecCCeEEEEecCccccccc
Q 010206 244 SDGETFIS-ADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC-NMLAYSSSKGSIRLIDMRQSALCDT 321 (515)
Q Consensus 244 ~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~-~~l~~~~~dg~i~~wd~~~~~~~~~ 321 (515)
|.-+.++. .--..+.++|++-......+ .++ .+.+.-+.+-|+.. ..|++...||.+.+|-.+......+
T Consensus 240 p~~rn~lfi~~prellv~dle~~~~l~vv------pie--r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~ 311 (1062)
T KOG1912|consen 240 PHWRNILFITFPRELLVFDLEYECCLAVV------PIE--RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFK 311 (1062)
T ss_pred hhhhceEEEEeccceEEEcchhhceeEEE------Eec--cCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCcccc
Confidence 76444433 46677999999855443321 122 33344455656542 5788899999999997654221110
Q ss_pred c-ccee--eeccCCCccccccccccceeEEEEccC-CCEEEE-EcCCeEEEEEeeCCCCCeeeEee-----------ec-
Q 010206 322 H-SKLF--EEQEAPGTRSFFTEIIASISDIKFARN-GRHILS-RDYMTLKLWDINMDSGPVATFQV-----------HE- 384 (515)
Q Consensus 322 ~-~~~~--~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~s-~~~~~i~iwd~~~~~~~~~~~~~-----------~~- 384 (515)
. ...+ +...+....+.+.. ..+......|. ...++. -++|.+.+|.+.+ ++.-..... ..
T Consensus 312 ~~~~~l~~dl~~Q~~~vr~m~~--~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~-~ri~~~~~s~~iel~~pf~f~~~ 388 (1062)
T KOG1912|consen 312 KPNASLSMDLGEQVHVVRPMEE--FRPVIGASCPSTPSALAVLYSSGDSTFWQLSN-GRIHLDYRSSSIELVLPFDFNLS 388 (1062)
T ss_pred ccchhhccccccceEEEeechh--cccceeecCCCChhhhhhhhhcchhHHHhhhc-CCcCcccccccccccccccccCc
Confidence 0 0000 00000000000000 01112222333 222222 2446777887764 221100000 00
Q ss_pred -cc--cccccccccCC-Ccccee-----------eEEEcCCC-------CEEEEecCCCcEEEEecCCCCcceeeeccCC
Q 010206 385 -HL--RPKLCDLYEND-SIFDKF-----------ECCLSGDG-------GRVATGSYSNLFRVFGCSEGSAESTTLEASK 442 (515)
Q Consensus 385 -~~--~~~~~~~~~~~-~~~~v~-----------~~~~s~~~-------~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~ 442 (515)
.. ...+..+...+ .-.+.+ -..-.|.+ .++|.|.+.|+|.++|+.++ .+...+..|.
T Consensus 389 ~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~-~v~~~fsvht 467 (1062)
T KOG1912|consen 389 TKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTN-AVAASFSVHT 467 (1062)
T ss_pred eeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecch-hhhhhhcccc
Confidence 00 00000000000 000000 11112222 26789999999999999987 5668889999
Q ss_pred CceeeEEECCCCCeeEeecC-----CCeEE----E---ecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcC
Q 010206 443 NPMRRQVQTPSRPSRPLGSL-----SGVVR----R---VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS 507 (515)
Q Consensus 443 ~~v~~~~~~~~~~~l~s~~~-----d~~v~----l---~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~ 507 (515)
..|..+.|....+++-.+.. .|.++ + ..|-... +.+..-.-..+|+.+..|..++||++.-.
T Consensus 468 ~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~---fR~l~~~despI~~irvS~~~~yLai~Fr 541 (1062)
T KOG1912|consen 468 SLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKR---FRGLQKPDESPIRAIRVSSSGRYLAILFR 541 (1062)
T ss_pred cceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccc---cccCCCCCcCcceeeeecccCceEEEEec
Confidence 99999999776655422211 11111 1 1121111 11112223578999999999999997753
No 276
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.06 E-value=3.1e-08 Score=81.83 Aligned_cols=254 Identities=12% Similarity=0.094 Sum_probs=153.7
Q ss_pred EEEEECC-----CCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccc
Q 010206 39 SAIEFDK-----SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (515)
Q Consensus 39 ~~v~~s~-----~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (515)
+-+.|-| .-.+||.|+.-|...+|...+.+.. ......|.. .++
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h----------------------~~~cd~snn------~v~--- 119 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGH----------------------LYQCDVSNN------DVT--- 119 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccc----------------------eeeeccccc------chh---
Confidence 3445655 2348999999999999998765532 111111210 000
Q ss_pred eeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccC
Q 010206 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (515)
Q Consensus 114 ~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~ 193 (515)
-+...+- . ...+..++.|.++++.+++.+.......... ....++++++|++.+
T Consensus 120 ~~~r~cd--~--~~~~~i~sndht~k~~~~~~~s~~~~~h~~~---------------~~~ns~~~snd~~~~------- 173 (344)
T KOG4532|consen 120 LVKRYCD--L--KFPLNIASNDHTGKTMVVSGDSNKFAVHNQN---------------LTQNSLHYSNDPSWG------- 173 (344)
T ss_pred hhhhhcc--c--ccceeeccCCcceeEEEEecCcccceeeccc---------------cceeeeEEcCCCceE-------
Confidence 0111111 1 1247778999999999998765443332221 001178899999988
Q ss_pred CCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccccee
Q 010206 194 SNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 272 (515)
Q Consensus 194 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 272 (515)
++.+....|-.|. +.+..... .+++.......=.+..|+.....+|++ .||++.|||++....+....
T Consensus 174 -----~~Vgds~~Vf~y~--id~~sey~----~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ 242 (344)
T KOG4532|consen 174 -----SSVGDSRRVFRYA--IDDESEYI----ENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI 242 (344)
T ss_pred -----EEecCCCcceEEE--eCCcccee----eeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence 7777788888777 33322211 112233444555688899999999999 89999999999776554322
Q ss_pred cccCccccccCCceEEEEEecCCC-cEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 273 DVKPANMEDLTEVITSAEFHPTHC-NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 273 ~~~~~~~~~~~~~i~~i~~~p~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
. .+-..|.+.++.+.|++-|. .+|+..-.-+.+.+-|+|++.-+.. +...+.. .+...+..|..-.|+
T Consensus 243 s---strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~-I~i~~d~-------~~~~~tq~ifgt~f~ 311 (344)
T KOG4532|consen 243 S---STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV-IVIPDDV-------ERKHNTQHIFGTNFN 311 (344)
T ss_pred c---ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE-EecCccc-------ccccccccccccccc
Confidence 1 23355899999999998653 2455555567899999999864322 1111111 111122347777788
Q ss_pred cCCCEEEEEcCCeEEEEEee
Q 010206 352 RNGRHILSRDYMTLKLWDIN 371 (515)
Q Consensus 352 ~~~~~l~s~~~~~i~iwd~~ 371 (515)
.++.-+.+.+.-.+.=|++.
T Consensus 312 ~~n~s~~v~~e~~~ae~ni~ 331 (344)
T KOG4532|consen 312 NENESNDVKNELQGAEYNIL 331 (344)
T ss_pred CCCcccccccchhhheeecc
Confidence 77766666554344455554
No 277
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.03 E-value=5.3e-07 Score=81.46 Aligned_cols=255 Identities=10% Similarity=0.106 Sum_probs=138.0
Q ss_pred ECCCCCeEEeecC----------CCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccc
Q 010206 43 FDKSGDHLATGDR----------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (515)
Q Consensus 43 ~s~~g~~lasg~~----------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (515)
+||||+.|+++.. +..|.+||..+.+....+... -.|++. .+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p---------~~p~~~-----~~-------------- 104 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP---------EGPRFL-----VG-------------- 104 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccC---------CCchhh-----cc--------------
Confidence 9999998887765 679999999988754221110 000000 00
Q ss_pred ceeEEEEEeecCCCcEEEeee-C-CCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 113 EKINKIRWCQSANSALYLLST-N-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..-..+++ +++|++|++.. . +..|.+.|+.+++.......... ..++... -...+....||+.+.
T Consensus 105 ~~~~~~~l--s~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-------~~vy~t~-e~~~~~~~~Dg~~~~--- 171 (352)
T TIGR02658 105 TYPWMTSL--TPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-------YHIFPTA-NDTFFMHCRDGSLAK--- 171 (352)
T ss_pred CccceEEE--CCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-------cEEEEec-CCccEEEeecCceEE---
Confidence 12335566 67788888764 3 79999999999987775554210 0000000 000112233333321
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEE-EEecC-CCCEEEEeCCCcEEEEeCCCCCcc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINS-ISNNS-DGETFISADDLRINLWNLEISNQS 268 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~~~l~s~~d~~i~iwd~~~~~~~ 268 (515)
++-..+|... ......+ ......+.. -.|.+ +++++..+..|+|.+.|+......
T Consensus 172 --------v~~d~~g~~~--------------~~~~~vf-~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~ 228 (352)
T TIGR02658 172 --------VGYGTKGNPK--------------IKPTEVF-HPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAK 228 (352)
T ss_pred --------EEecCCCceE--------------Eeeeeee-cCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcce
Confidence 1111111111 0011110 110000000 03345 888888875599999997543321
Q ss_pred c----ceecccCccccccCCceEEEEEecCCCcEEEE-Ee---------cCCeEEEEecCcccccccccceeeeccCCCc
Q 010206 269 F----NIVDVKPANMEDLTEVITSAEFHPTHCNMLAY-SS---------SKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 334 (515)
Q Consensus 269 ~----~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~-~~---------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 334 (515)
. .++......-....+.+.-++++|++ +.++. .. ..+.|.++|..+++...+ +...
T Consensus 229 ~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg-~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~----i~vG----- 298 (352)
T TIGR02658 229 FLPAIEAFTEAEKADGWRPGGWQQVAYHRAR-DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRK----IELG----- 298 (352)
T ss_pred ecceeeeccccccccccCCCcceeEEEcCCC-CEEEEEecCCccccccCCCCEEEEEECCCCeEEEE----EeCC-----
Confidence 1 11111000001133445559999998 55554 32 125799999988875432 1111
Q ss_pred cccccccccceeEEEEccCCC-EEEEEc--CCeEEEEEeeCCCCCeeeE
Q 010206 335 RSFFTEIIASISDIKFARNGR-HILSRD--YMTLKLWDINMDSGPVATF 380 (515)
Q Consensus 335 ~~~~~~~~~~i~~~~~s~~~~-~l~s~~--~~~i~iwd~~~~~~~~~~~ 380 (515)
..+..++++||++ +|++.+ .+.|.++|..+ .+.++++
T Consensus 299 --------~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t-~k~i~~i 338 (352)
T TIGR02658 299 --------HEIDSINVSQDAKPLLYALSTGDKTLYIFDAET-GKELSSV 338 (352)
T ss_pred --------CceeeEEECCCCCeEEEEeCCCCCcEEEEECcC-CeEEeee
Confidence 3688999999999 777655 38899999986 7777766
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.03 E-value=4.7e-07 Score=95.13 Aligned_cols=188 Identities=13% Similarity=0.146 Sum_probs=106.8
Q ss_pred eEEEEecCC-CCEEEEe-CCCcEEEEeCCCCCcccceec-ccCcccc------ccCCceEEEEEecCCCcEEEEEecCCe
Q 010206 237 INSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVD-VKPANME------DLTEVITSAEFHPTHCNMLAYSSSKGS 307 (515)
Q Consensus 237 v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~-~~~~~~~------~~~~~i~~i~~~p~~~~~l~~~~~dg~ 307 (515)
...++++|+ +.++++. .++.|++||..++.... +.. -...... ..-.....++++|++..++++-+.++.
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~ 763 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS 763 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence 457899994 5555554 68899999987543210 000 0000000 112345789999998346667777899
Q ss_pred EEEEecCccccccc---------ccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCe
Q 010206 308 IRLIDMRQSALCDT---------HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPV 377 (515)
Q Consensus 308 i~~wd~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~ 377 (515)
|++||+.++..... ....+........ ...-.....++++++|+.+++-.. ++|++||..+ + .+
T Consensus 764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~----~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t-g-~v 837 (1057)
T PLN02919 764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGS----EVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT-K-RV 837 (1057)
T ss_pred EEEEECCCCcEEEEEecccccCcccccccCCCCchh----hhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC-C-eE
Confidence 99999987642100 0000000000000 001123468899999987777555 9999999874 3 33
Q ss_pred eeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCC
Q 010206 378 ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 432 (515)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~ 432 (515)
.++.+....... ..............++++++|+++++-+.++.|++||+.++.
T Consensus 838 ~tiaG~G~~G~~-dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 838 TTLAGTGKAGFK-DGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EEEeccCCcCCC-CCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 333332210000 000000111123479999999999998999999999998864
No 279
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.02 E-value=1e-07 Score=85.98 Aligned_cols=306 Identities=13% Similarity=0.118 Sum_probs=175.1
Q ss_pred cceEEEEECCCCCeEEeecCCC---------------eEEEEEcccCcccCccccCccc-ccc-cccCCccceeeeeccc
Q 010206 36 DIISAIEFDKSGDHLATGDRGG---------------RVVLFERTDTRDNGGQRRDLEM-MDY-SMSRHPEFRYKTEFQS 98 (515)
Q Consensus 36 ~~v~~v~~s~~g~~lasg~~dg---------------~v~vw~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~ 98 (515)
..|..+.|||.++||.+=+..+ .+.|||..++..+......... ..- -+.|+-+-.+...+-+
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~ 151 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG 151 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc
Confidence 4678899999999999865433 4999999988765322211111 000 0111111111111111
Q ss_pred -----CC--Ccc--cccccccccceeEEEEEeecCCCcEEEe-----eeCCCeEEEEEccCCeeEEEeeccCCcccCCCC
Q 010206 99 -----HE--PEF--DYLKSLEIEEKINKIRWCQSANSALYLL-----STNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGN 164 (515)
Q Consensus 99 -----h~--~~~--~~~~~~~~~~~v~~l~~~~~~~~~~l~~-----~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 164 (515)
|+ +.+ -+.+.+. ...|....|+|..+...|+. ...+.++++|.+..++......+-.-.
T Consensus 152 ~sl~i~e~t~n~~~~p~~~lr-~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~------ 224 (561)
T COG5354 152 SSLYIHEITDNIEEHPFKNLR-PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVS------ 224 (561)
T ss_pred CeEEEEecCCccccCchhhcc-ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeec------
Confidence 11 000 0111111 26688888988766555555 356889999999866544332222100
Q ss_pred CCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC
Q 010206 165 GPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS 244 (515)
Q Consensus 165 ~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 244 (515)
-..+.|.+.|+++.++..... ..-=+--....+.+++ +.... +. . ...-.++|..++|.|
T Consensus 225 ---------~~qLkW~~~g~~ll~l~~t~~-ksnKsyfgesnLyl~~--~~e~~------i~-V-~~~~~~pVhdf~W~p 284 (561)
T COG5354 225 ---------GVQLKWQVLGKYLLVLVMTHT-KSNKSYFGESNLYLLR--ITERS------IP-V-EKDLKDPVHDFTWEP 284 (561)
T ss_pred ---------ccEEEEecCCceEEEEEEEee-ecccceeccceEEEEe--ecccc------cc-e-eccccccceeeeecc
Confidence 016788888888755422111 0000111234566666 22111 11 1 124468999999999
Q ss_pred CCCEEEE--e-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC---CeEEEEecCcccc
Q 010206 245 DGETFIS--A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSAL 318 (515)
Q Consensus 245 ~~~~l~s--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d---g~i~~wd~~~~~~ 318 (515)
.++.+++ | ....+.++|++.. ..+ ......=..+.|+|.+ ++++.++.| |.|.+||......
T Consensus 285 ~S~~F~vi~g~~pa~~s~~~lr~N-l~~----------~~Pe~~rNT~~fsp~~-r~il~agF~nl~gni~i~~~~~rf~ 352 (561)
T COG5354 285 LSSRFAVISGYMPASVSVFDLRGN-LRF----------YFPEQKRNTIFFSPHE-RYILFAGFDNLQGNIEIFDPAGRFK 352 (561)
T ss_pred cCCceeEEecccccceeecccccc-eEE----------ecCCcccccccccCcc-cEEEEecCCccccceEEeccCCceE
Confidence 9888876 4 5899999999854 221 1123334567899998 788776664 7899999876654
Q ss_pred cccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-------CCeEEEEEeeCCCCCeeeEeeecccccccc
Q 010206 319 CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-------YMTLKLWDINMDSGPVATFQVHEHLRPKLC 391 (515)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 391 (515)
+. ..+.+ ....-+.|+||++++.+.. |..|+|||+. +..+..
T Consensus 353 ~~---~~~~~--------------~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~--g~~~fe------------ 401 (561)
T COG5354 353 VA---GAFNG--------------LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY--GAKVFE------------ 401 (561)
T ss_pred EE---EEeec--------------CCceEeeccCCceEEEecCCCcccccCcceEEEEec--Cchhhh------------
Confidence 32 12222 2356678999999998742 3789999997 333321
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEecCCC
Q 010206 392 DLYENDSIFDKFECCLSGDGGRVATGSYSN 421 (515)
Q Consensus 392 ~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg 421 (515)
.+.+.|.|.|++.-+.+.+.
T Consensus 402 ----------l~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 402 ----------LTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred ----------hhhccccCCcccceeeccCC
Confidence 12566777777666555443
No 280
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.99 E-value=1.4e-06 Score=91.73 Aligned_cols=227 Identities=10% Similarity=0.091 Sum_probs=131.4
Q ss_pred CCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecc--cCccccc-------cCCceEEEEEecCCCcEEEEEe
Q 010206 235 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDV--KPANMED-------LTEVITSAEFHPTHCNMLAYSS 303 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~-------~~~~i~~i~~~p~~~~~l~~~~ 303 (515)
.....++++++++.|..+ ..+.|+.+|+.++.. ..+... ......+ .-.....++++|++..++++.+
T Consensus 624 ~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~ 702 (1057)
T PLN02919 624 NRPQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA 702 (1057)
T ss_pred CCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC
Confidence 446788999988876665 467899999865431 111000 0000000 0123468999995437778888
Q ss_pred cCCeEEEEecCcccccccccceeeeccCCCcc---ccccccccceeEEEEccCCCEEEEEc-C-CeEEEEEeeCCCCCee
Q 010206 304 SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR---SFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVA 378 (515)
Q Consensus 304 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~~~~ 378 (515)
.++.|++||..++... .+.+....... ......-.....++++|+++.|+.++ + +.|++||+.+ +.. .
T Consensus 703 ~~~~I~v~d~~~g~v~-----~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t-g~~-~ 775 (1057)
T PLN02919 703 GQHQIWEYNISDGVTR-----VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKT-GGS-R 775 (1057)
T ss_pred CCCeEEEEECCCCeEE-----EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCC-CcE-E
Confidence 8999999999776431 12111000000 00000113457799999998666553 3 8999999975 322 1
Q ss_pred eEeeecc-ccccccccccC------CCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCccee------------eec
Q 010206 379 TFQVHEH-LRPKLCDLYEN------DSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAEST------------TLE 439 (515)
Q Consensus 379 ~~~~~~~-~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~------------~~~ 439 (515)
.+.+... .......+-.. .....-..++++++|+++++-+.+++|++||..++..... ...
T Consensus 776 ~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~ 855 (1057)
T PLN02919 776 LLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALK 855 (1057)
T ss_pred EEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccc
Confidence 1111000 00000000000 0011123789999999988889999999999986522110 011
Q ss_pred cCCCceeeEEECCCCCeeEeecCCCeEEEe
Q 010206 440 ASKNPMRRQVQTPSRPSRPLGSLSGVVRRV 469 (515)
Q Consensus 440 ~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~ 469 (515)
+.......++++++|+.+++-+.++.|+++
T Consensus 856 a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 856 AQLSEPAGLALGENGRLFVADTNNSLIRYL 885 (1057)
T ss_pred cccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence 223456789999999999999999999983
No 281
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=7.3e-09 Score=94.04 Aligned_cols=243 Identities=16% Similarity=0.138 Sum_probs=136.5
Q ss_pred ccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEE
Q 010206 231 HAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 310 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~ 310 (515)
..|..+|.++.|-.+-+.++++ |+.|.+||.-.+....++.+. .-.+..+.|.++.- -+.+-+++.++...++++
T Consensus 781 ~aHkk~i~~igfL~~lr~i~Sc-D~giHlWDPFigr~Laq~~da---pk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl 855 (1034)
T KOG4190|consen 781 QAHKKPIHDIGFLADLRSIASC-DGGIHLWDPFIGRLLAQMEDA---PKEGAGGNIKCLEN-VDRHILIAGCSAESTVKL 855 (1034)
T ss_pred hhccCcccceeeeeccceeeec-cCcceeecccccchhHhhhcC---cccCCCceeEeccc-Ccchheeeeccchhhhee
Confidence 6899999999999988887765 567999998766554333221 11122333444422 123133444477899999
Q ss_pred EecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeecccccc
Q 010206 311 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPK 389 (515)
Q Consensus 311 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~ 389 (515)
+|.+...... .+...+. .+-.+.+++++..+.|+.++++- .|.|.+.|.++ ++.+..+...+...
T Consensus 856 ~DaRsce~~~----E~kVcna-------~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~-G~vINswrpmecdl-- 921 (1034)
T KOG4190|consen 856 FDARSCEWTC----ELKVCNA-------PGPNALTRAIAVADKGNKLAAALSNGCIAILDARN-GKVINSWRPMECDL-- 921 (1034)
T ss_pred eeccccccee----eEEeccC-------CCCchheeEEEeccCcchhhHHhcCCcEEEEecCC-CceeccCCcccchh--
Confidence 9999876432 2222211 11225689999999999999984 59999999997 77665554332111
Q ss_pred ccccccCCCccceeeEEEcCCCCEEEEecCCCcEEE-EecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 390 LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV-FGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 390 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~i-w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
..++ .|..+.|+....|.++.+ |..-.+... ...+....|.. -...-|+.|++......+.+
T Consensus 922 -------------lqla-apsdq~L~~saldHslaVnWhaldgimh-~q~kpppepah--flqsvgpSLV~a~~Gn~lgV 984 (1034)
T KOG4190|consen 922 -------------LQLA-APSDQALAQSALDHSLAVNWHALDGIMH-LQDKPPPEPAH--FLQSVGPSLVTAQNGNILGV 984 (1034)
T ss_pred -------------hhhc-CchhHHHHhhcccceeEeeehhcCCeee-eccCCCCcchh--hhhccCceeEEeccCcEEEE
Confidence 1222 345567777777888888 876655222 22221111111 11123455555555555555
Q ss_pred e-cCCCCCccccC--CccccccCCeeEEEEcCCCCEEEEEcCCc
Q 010206 469 V-KGADNSALDAN--GNAFDFSMKLLHLAWHPSENSIACAASNS 509 (515)
Q Consensus 469 ~-~~~~~~~~~~~--~~~~~~~~~i~~~~~s~~~~~la~~~~~~ 509 (515)
+ +..+....... ...-.+.+..++++--|=..-+..|...|
T Consensus 985 Yad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G 1028 (1034)
T KOG4190|consen 985 YADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHG 1028 (1034)
T ss_pred EecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCC
Confidence 1 11111100000 01113456677888777666555555443
No 282
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.96 E-value=1.5e-07 Score=88.84 Aligned_cols=180 Identities=11% Similarity=0.042 Sum_probs=108.5
Q ss_pred CeEEEEecCCCCE-EEE-e-C--CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC--CeE
Q 010206 236 HINSISNNSDGET-FIS-A-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--GSI 308 (515)
Q Consensus 236 ~v~~~~~~~~~~~-l~s-~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d--g~i 308 (515)
......|+|||+. ++. . . +..|.++|+.+++.. .+....+......|+|||..++++.+.+ ..|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~---------~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 259 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE---------KIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDI 259 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE---------EEecCCCcEEeeEECCCCCEEEEEEccCCCcEE
Confidence 6678999999984 553 3 3 467899999766533 2222345556778999994444454444 457
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--C--eEEEEEeeCCCCCeeeEeeec
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--M--TLKLWDINMDSGPVATFQVHE 384 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~--~i~iwd~~~~~~~~~~~~~~~ 384 (515)
.++|+.++... .+ ..+........|+|||+.|+..++ + .|.+.|+.. ++. ..+....
T Consensus 260 y~~dl~~g~~~-----~L------------T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-g~~-~rlt~~g 320 (419)
T PRK04043 260 YLYDTNTKTLT-----QI------------TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-GSV-EQVVFHG 320 (419)
T ss_pred EEEECCCCcEE-----Ec------------ccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC-CCe-EeCccCC
Confidence 77787666421 11 111112234579999998886543 3 667777763 332 2222111
Q ss_pred cccccccccccCCCccceeeEEEcCCCCEEEEecCC---------CcEEEEecCCCCcceeeeccCCCceeeEEECCCCC
Q 010206 385 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---------NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP 455 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d---------g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 455 (515)
.. ...|||||++|+..+.. ..|.+.|+.++... .+... .......|+|||+
T Consensus 321 ~~-----------------~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~--~LT~~-~~~~~p~~SPDG~ 380 (419)
T PRK04043 321 KN-----------------NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR--RLTAN-GVNQFPRFSSDGG 380 (419)
T ss_pred Cc-----------------CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE--ECCCC-CCcCCeEECCCCC
Confidence 11 24899999998765533 36788888877433 23222 1233578999999
Q ss_pred eeEeecCC
Q 010206 456 SRPLGSLS 463 (515)
Q Consensus 456 ~l~s~~~d 463 (515)
.++..+.+
T Consensus 381 ~I~f~~~~ 388 (419)
T PRK04043 381 SIMFIKYL 388 (419)
T ss_pred EEEEEEcc
Confidence 87666543
No 283
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.94 E-value=7.6e-07 Score=74.98 Aligned_cols=186 Identities=16% Similarity=0.199 Sum_probs=112.3
Q ss_pred cCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCcc-c-cccCCceEEEEEecCC-----CcEEEEEe
Q 010206 232 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN-M-EDLTEVITSAEFHPTH-----CNMLAYSS 303 (515)
Q Consensus 232 ~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~-~-~~~~~~i~~i~~~p~~-----~~~l~~~~ 303 (515)
.....-+-++|+||+.+||.+ +.|+|+++|+.. ...+. ++|.. . ......|..+.|.+.. ...|++-.
T Consensus 41 D~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~---I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~ 116 (282)
T PF15492_consen 41 DPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFV---IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVIN 116 (282)
T ss_pred CCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEE---cCcccccCCccccceeeeEeeccccccccceeEEEEe
Confidence 334456789999999999999 899999999974 33332 22211 1 1124567777775432 13667777
Q ss_pred cCCeEEEEecCccccc-ccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-C--C---------eEEEEEe
Q 010206 304 SKGSIRLIDMRQSALC-DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y--M---------TLKLWDI 370 (515)
Q Consensus 304 ~dg~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~--~---------~i~iwd~ 370 (515)
.+|.++-|-+..+... .+....|. +...+...|.++.++|..++|+.|+ . . -+..|.+
T Consensus 117 Y~G~L~Sy~vs~gt~q~y~e~hsfs---------f~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRi 187 (282)
T PF15492_consen 117 YRGQLRSYLVSVGTNQGYQENHSFS---------FSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRI 187 (282)
T ss_pred ccceeeeEEEEcccCCcceeeEEEE---------ecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEE
Confidence 8888887776432110 00011111 1122346899999999988888753 1 1 3677887
Q ss_pred eCCCCCeeeEeee--cccc--c---c---ccc--cc--cCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCC
Q 010206 371 NMDSGPVATFQVH--EHLR--P---K---LCD--LY--ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 371 ~~~~~~~~~~~~~--~~~~--~---~---~~~--~~--~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
-. +.+....... +... . . +.. ++ .....-.|+.|..||||+.||+...+|.|.+|++.+-
T Consensus 188 L~-~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 188 LS-DSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred cC-CCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 64 4333221111 1100 0 0 010 11 1122334679999999999999999999999999875
No 284
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.91 E-value=7e-07 Score=84.37 Aligned_cols=301 Identities=11% Similarity=0.118 Sum_probs=158.0
Q ss_pred CCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEEEeecCC
Q 010206 46 SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSAN 125 (515)
Q Consensus 46 ~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~ 125 (515)
.+..+++++.+|.|..+|..+++.. ....+.. .+.. .|..+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~---------------------W~~~~~~---------------~~~~---~p~v~ 104 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRL---------------------WRVDLDE---------------RLSG---GVGAD 104 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEe---------------------eeecCCC---------------Cccc---ceEEc
Confidence 3567888888999999998887743 0011111 1110 11123
Q ss_pred CcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcc
Q 010206 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (515)
Q Consensus 126 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 205 (515)
+..+++++.++.+..+|..+++.......... +.. .... .++ .+ +.+..++
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~---------~~~------~p~v-~~~-~v------------~v~~~~g 155 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSE---------VLS------PPLV-ANG-LV------------VVRTNDG 155 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCce---------eec------CCEE-ECC-EE------------EEECCCC
Confidence 45788888999999999999987765443211 100 1111 122 22 5556678
Q ss_pred cEEeeeeeecccccccccceeeeeeccCcCCe-----EEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccc
Q 010206 206 SLRLPVVVVTSQETNLVAGCRRIYAHAHDYHI-----NSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANM 279 (515)
Q Consensus 206 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 279 (515)
.+..+| ..+.+. +..+ ......+ .+.... + ..++.+ .++.+..+|+++++...+.....+..
T Consensus 156 ~l~a~d--~~tG~~------~W~~-~~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g- 223 (377)
T TIGR03300 156 RLTALD--AATGER------LWTY-SRVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKG- 223 (377)
T ss_pred eEEEEE--cCCCce------eeEE-ccCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCC-
Confidence 888887 333221 1110 0000000 011111 2 355566 78899999998776543210000000
Q ss_pred cccCCc---e-EEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCC
Q 010206 280 EDLTEV---I-TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 355 (515)
Q Consensus 280 ~~~~~~---i-~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 355 (515)
...... + .+..+. + ..++.++.+|.+..||..+++...+. .. ........ .+.
T Consensus 224 ~~~~~~~~~~~~~p~~~--~-~~vy~~~~~g~l~a~d~~tG~~~W~~------~~------------~~~~~p~~--~~~ 280 (377)
T TIGR03300 224 RTELERLVDVDGDPVVD--G-GQVYAVSYQGRVAALDLRSGRVLWKR------DA------------SSYQGPAV--DDN 280 (377)
T ss_pred CCchhhhhccCCccEEE--C-CEEEEEEcCCEEEEEECCCCcEEEee------cc------------CCccCceE--eCC
Confidence 000000 0 111122 3 46777888999999999988754321 10 01111222 345
Q ss_pred EEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc
Q 010206 356 HILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 356 ~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
.++.++ +|.+..+|..+ ++.+-......... ..+... .+..|++++.+|.|+++|..++ ++
T Consensus 281 ~vyv~~~~G~l~~~d~~t-G~~~W~~~~~~~~~--------------~ssp~i--~g~~l~~~~~~G~l~~~d~~tG-~~ 342 (377)
T TIGR03300 281 RLYVTDADGVVVALDRRS-GSELWKNDELKYRQ--------------LTAPAV--VGGYLVVGDFEGYLHWLSREDG-SF 342 (377)
T ss_pred EEEEECCCCeEEEEECCC-CcEEEccccccCCc--------------cccCEE--ECCEEEEEeCCCEEEEEECCCC-CE
Confidence 666655 59999999986 55443321111000 002222 4568889999999999999887 45
Q ss_pred eeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 435 STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 435 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+..++.+..++..--...++ .|..++.||.+..
T Consensus 343 ~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~l~~ 375 (377)
T TIGR03300 343 VARLKTDGSGIASPPVVVGD-GLLVQTRDGDLYA 375 (377)
T ss_pred EEEEEcCCCccccCCEEECC-EEEEEeCCceEEE
Confidence 45666555433222122233 4667777877653
No 285
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.89 E-value=2.1e-08 Score=94.31 Aligned_cols=184 Identities=17% Similarity=0.227 Sum_probs=129.3
Q ss_pred CeEEEEecCC---CCEEEEeCCCcEEEEeCCCCCcc-cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEE
Q 010206 236 HINSISNNSD---GETFISADDLRINLWNLEISNQS-FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 311 (515)
Q Consensus 236 ~v~~~~~~~~---~~~l~s~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~w 311 (515)
.|-.+.|+|. ..++++-....-.+|++...... +.+ .+.+|...|+.+.|+|+.+..+++++.|-.+..|
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef------~lhghsraitd~n~~~q~pdVlatcsvdt~vh~w 142 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEF------VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAW 142 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEE------EEecCccceeccccCCCCCcceeeccccccceee
Confidence 4566778764 33444446666778988654322 222 4578999999999999998999999999999999
Q ss_pred ecCcccccccccceeeeccCCCccccccccccceeEEEEcc-CCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccc
Q 010206 312 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKL 390 (515)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 390 (515)
|++..... ++.+..- ...-..|+|+- ++..+|+...+.|++||++.+..++..+++|...+
T Consensus 143 d~rSp~~p---~ys~~~w------------~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~v--- 204 (1081)
T KOG0309|consen 143 DMRSPHRP---FYSTSSW------------RSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSV--- 204 (1081)
T ss_pred eccCCCcc---eeeeecc------------cccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceee---
Confidence 99875422 2222221 13457788986 66667766668999999999888999998865442
Q ss_pred cccccCCCccceeeEEEcCC-CCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCC
Q 010206 391 CDLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP 455 (515)
Q Consensus 391 ~~~~~~~~~~~v~~~~~s~~-~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 455 (515)
..+.|..- -..+.+.+.|++|++||................++..-.+.|-|.
T Consensus 205 ------------n~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 205 ------------NSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGE 258 (1081)
T ss_pred ------------ehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCc
Confidence 24555431 235778999999999998865444445555667787777877665
No 286
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.89 E-value=3.9e-08 Score=86.02 Aligned_cols=159 Identities=11% Similarity=0.149 Sum_probs=99.8
Q ss_pred eEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCC---eEEEEe
Q 010206 237 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLID 312 (515)
Q Consensus 237 v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg---~i~~wd 312 (515)
+..+..++.+++++.+ .+....++++....+..++++. .......+++.|..+. .....+..-| .+.+|.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~-----~~v~~~~~ai~~~~~~-~sv~v~dkagD~~~~di~s 138 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDV-----SCVPKRPTAISFIRED-TSVLVADKAGDVYSFDILS 138 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeE-----eecccCcceeeeeecc-ceEEEEeecCCceeeeeec
Confidence 3445667888888888 6777767777654432222211 1112223444444443 3333333333 344444
Q ss_pred cCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccccccc
Q 010206 313 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLC 391 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 391 (515)
...+. ...+-||.+.++.++|+||++++++++. ..|++-........-.-+.+|...+.
T Consensus 139 ~~~~~-----------------~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS--- 198 (390)
T KOG3914|consen 139 ADSGR-----------------CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVS--- 198 (390)
T ss_pred ccccC-----------------cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhhee---
Confidence 33222 1225788899999999999999999986 99999877642222233456777644
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc
Q 010206 392 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 392 ~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
.++.- +++.|++||.|++|++||+.+++.+
T Consensus 199 ------------~isl~-~~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 199 ------------TISLT-DNYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred ------------eeeec-cCceeeecCCCCcEEEEecccCCcc
Confidence 56655 4566899999999999999999665
No 287
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.89 E-value=4.8e-08 Score=100.70 Aligned_cols=185 Identities=12% Similarity=0.160 Sum_probs=137.5
Q ss_pred ccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010206 231 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 309 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~ 309 (515)
..+-..|.++.-+|...+.++| .||.+++|....+.+.... . ......|+.+.|+.+| +.+..+..||.+.
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~------r-t~g~s~vtr~~f~~qG-nk~~i~d~dg~l~ 2276 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCF------R-TAGNSRVTRSRFNHQG-NKFGIVDGDGDLS 2276 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEe------e-ccCcchhhhhhhcccC-CceeeeccCCcee
Confidence 4455778888889999999998 8999999998766654322 1 1234788999999999 8999999999999
Q ss_pred EEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEE---cC-CeEEEEEeeCCCCCeeeEeeecc
Q 010206 310 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR---DY-MTLKLWDINMDSGPVATFQVHEH 385 (515)
Q Consensus 310 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~---~~-~~i~iwd~~~~~~~~~~~~~~~~ 385 (515)
+|...... ... .+.|......+.|-. ..++++ ++ +.+.+||...+...-..-..|.+
T Consensus 2277 l~q~~pk~-----~~s------------~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~ 2337 (2439)
T KOG1064|consen 2277 LWQASPKP-----YTS------------WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDG 2337 (2439)
T ss_pred ecccCCcc-----eec------------cccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCC
Confidence 99986221 112 233556677777764 566663 35 99999997654333333356655
Q ss_pred ccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCe
Q 010206 386 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV 465 (515)
Q Consensus 386 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 465 (515)
. ++.+++-|..+.|++|+.+|.|++||++.. +++++++. +. ...++++|+..|.
T Consensus 2338 g---------------aT~l~~~P~~qllisggr~G~v~l~D~rqr-ql~h~~~~---------~~-~~~~f~~~ss~g~ 2391 (2439)
T KOG1064|consen 2338 G---------------ATVLAYAPKHQLLISGGRKGEVCLFDIRQR-QLRHTFQA---------LD-TREYFVTGSSEGN 2391 (2439)
T ss_pred C---------------ceEEEEcCcceEEEecCCcCcEEEeehHHH-HHHHHhhh---------hh-hhheeeccCcccc
Confidence 4 568999999999999999999999999865 45455544 33 5678999999999
Q ss_pred EEE
Q 010206 466 VRR 468 (515)
Q Consensus 466 v~l 468 (515)
+++
T Consensus 2392 ikI 2394 (2439)
T KOG1064|consen 2392 IKI 2394 (2439)
T ss_pred eEE
Confidence 999
No 288
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.87 E-value=6.6e-07 Score=74.15 Aligned_cols=232 Identities=9% Similarity=-0.022 Sum_probs=141.6
Q ss_pred CCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCccccccccc
Q 010206 245 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS 323 (515)
Q Consensus 245 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 323 (515)
...+|+.| ..|...+|...+.+....+.+. |...|.-+.=..+...-+..++.|.++++.++..+...
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~-------snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~---- 151 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDV-------SNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK---- 151 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecc-------cccchhhhhhhcccccceeeccCCcceeEEEEecCccc----
Confidence 34467777 7899999999876654433322 22222111111111134566788889998888655321
Q ss_pred ceeeeccCCCcccccccccc--ceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCcc
Q 010206 324 KLFEEQEAPGTRSFFTEIIA--SISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIF 400 (515)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (515)
+..|.. .+.++++++|++++++-+| ..|..|.+...+.-+......... +.
T Consensus 152 --------------~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~----------D~-- 205 (344)
T KOG4532|consen 152 --------------FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS----------DH-- 205 (344)
T ss_pred --------------ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC----------CC--
Confidence 111212 2788999999999999766 999999998644333222111111 11
Q ss_pred ceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcce----eeeccCCCceeeEEECCCCCe--eEeecCCCeEEEecCCCC
Q 010206 401 DKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES----TTLEASKNPMRRQVQTPSRPS--RPLGSLSGVVRRVKGADN 474 (515)
Q Consensus 401 ~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~--l~s~~~d~~v~l~~~~~~ 474 (515)
-++..|+.....+|++..||++.|||++....+. .+-..|...++.+.|++.|.. |...-.=+.+.+.+....
T Consensus 206 -gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 206 -GFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY 284 (344)
T ss_pred -ceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence 1378999999999999999999999998754332 223468899999999987653 332222344444333332
Q ss_pred CccccCCc----ccccc-CCeeEEEEcCCCCEEEEEcCCcEEEEe
Q 010206 475 SALDANGN----AFDFS-MKLLHLAWHPSENSIACAASNSLYMYY 514 (515)
Q Consensus 475 ~~~~~~~~----~~~~~-~~i~~~~~s~~~~~la~~~~~~~~i~~ 514 (515)
..-++... ...|. ..|..-.|+.++..+-++++..+.-|+
T Consensus 285 ~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~n 329 (344)
T KOG4532|consen 285 VNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQGAEYN 329 (344)
T ss_pred ceeeEEecCccccccccccccccccccCCCcccccccchhhheee
Confidence 22111111 11233 348888899988888888877776665
No 289
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.87 E-value=1.2e-06 Score=82.73 Aligned_cols=177 Identities=9% Similarity=0.024 Sum_probs=105.2
Q ss_pred ceEEEEEecCCCcEEEEEecC---CeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEE-
Q 010206 285 VITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR- 360 (515)
Q Consensus 285 ~i~~i~~~p~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~- 360 (515)
......|+|++...++..+.+ ..|.++|+.+++.. .+. ...+......|+|||+.|+..
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~-----~lt------------~~~g~~~~~~~SPDG~~la~~~ 251 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE-----KIA------------SSQGMLVVSDVSKDGSKLLLTM 251 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE-----EEe------------cCCCcEEeeEECCCCCEEEEEE
Confidence 677899999993345544443 46888898877531 111 111345567899999877753
Q ss_pred c-C--CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecC-CC--cEEEEecCCCCcc
Q 010206 361 D-Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SN--LFRVFGCSEGSAE 434 (515)
Q Consensus 361 ~-~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~-dg--~i~iw~~~~~~~~ 434 (515)
+ . ..|.++|+.. + ....+..+... .....|+|||+.|+-.+. .+ .|++.|+.++...
T Consensus 252 ~~~g~~~Iy~~dl~~-g-~~~~LT~~~~~---------------d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~ 314 (419)
T PRK04043 252 APKGQPDIYLYDTNT-K-TLTQITNYPGI---------------DVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE 314 (419)
T ss_pred ccCCCcEEEEEECCC-C-cEEEcccCCCc---------------cCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 2 2 5777888764 3 33444333211 015689999998775553 33 6777888876443
Q ss_pred eeeeccCCCceeeEEECCCCCeeEeecCCC---------eEEEe--cCCCCCccccCCccccccCCeeEEEEcCCCCEEE
Q 010206 435 STTLEASKNPMRRQVQTPSRPSRPLGSLSG---------VVRRV--KGADNSALDANGNAFDFSMKLLHLAWHPSENSIA 503 (515)
Q Consensus 435 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~---------~v~l~--~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la 503 (515)
..+..+.. ...++|+|+.++..+... .+.++ ++.... .+. ........+|+|||+.|+
T Consensus 315 rlt~~g~~----~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~--~LT-----~~~~~~~p~~SPDG~~I~ 383 (419)
T PRK04043 315 QVVFHGKN----NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR--RLT-----ANGVNQFPRFSSDGGSIM 383 (419)
T ss_pred eCccCCCc----CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE--ECC-----CCCCcCCeEECCCCCEEE
Confidence 33332221 248999999887766542 34442 233221 111 112334689999999998
Q ss_pred EEc
Q 010206 504 CAA 506 (515)
Q Consensus 504 ~~~ 506 (515)
..+
T Consensus 384 f~~ 386 (419)
T PRK04043 384 FIK 386 (419)
T ss_pred EEE
Confidence 665
No 290
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=2.2e-08 Score=91.04 Aligned_cols=294 Identities=14% Similarity=0.185 Sum_probs=170.3
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
...+|+..|.+++--.+.+-+++++.|.+|++|.+...... . ....+.-+++.|.
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~---------~-------~tsaCQfTY~aHk--------- 784 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE---------I-------GTSACQFTYQAHK--------- 784 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc---------c-------ccceeeeEhhhcc---------
Confidence 46789999999987778888999999999999998644321 0 0112445677888
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
.+|+++.|.. +- -..++.|+.|++||.--++........ |
T Consensus 785 ---k~i~~igfL~--~l--r~i~ScD~giHlWDPFigr~Laq~~da-------------------------p-------- 824 (1034)
T KOG4190|consen 785 ---KPIHDIGFLA--DL--RSIASCDGGIHLWDPFIGRLLAQMEDA-------------------------P-------- 824 (1034)
T ss_pred ---Ccccceeeee--cc--ceeeeccCcceeecccccchhHhhhcC-------------------------c--------
Confidence 8899999953 32 234567899999997655432211100 0
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQ 267 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~ 267 (515)
..+..+.|.|+. +-+...++++ ...+|+++|.+..+.
T Consensus 825 ----------------------------------------k~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~ 863 (1034)
T KOG4190|consen 825 ----------------------------------------KEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEW 863 (1034)
T ss_pred ----------------------------------------ccCCCceeEecc-cCcchheeeeccchhhheeeecccccc
Confidence 001112233331 1244455554 588999999987664
Q ss_pred ccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 347 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (515)
..++. --.-.+...-+++++..+.| +.++.+-.+|.|.+.|.++|+.+.. |...+ .....
T Consensus 864 ~~E~k---Vcna~~Pna~~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~vINs----wrpme------------cdllq 923 (1034)
T KOG4190|consen 864 TCELK---VCNAPGPNALTRAIAVADKG-NKLAAALSNGCIAILDARNGKVINS----WRPME------------CDLLQ 923 (1034)
T ss_pred eeeEE---eccCCCCchheeEEEeccCc-chhhHHhcCCcEEEEecCCCceecc----CCccc------------chhhh
Confidence 43321 01223445678999999999 9999999999999999999986422 22111 11222
Q ss_pred EEEccCCCEEEE-EcCCeEEE-EEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEE
Q 010206 348 IKFARNGRHILS-RDYMTLKL-WDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 425 (515)
Q Consensus 348 ~~~s~~~~~l~s-~~~~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~i 425 (515)
++ .|..+.|+. +.+.++.+ |-... +......+..... .--...-|.-|+++...+.+.+
T Consensus 924 la-apsdq~L~~saldHslaVnWhald-gimh~q~kpppep-----------------ahflqsvgpSLV~a~~Gn~lgV 984 (1034)
T KOG4190|consen 924 LA-APSDQALAQSALDHSLAVNWHALD-GIMHLQDKPPPEP-----------------AHFLQSVGPSLVTAQNGNILGV 984 (1034)
T ss_pred hc-CchhHHHHhhcccceeEeeehhcC-CeeeeccCCCCcc-----------------hhhhhccCceeEEeccCcEEEE
Confidence 22 234445554 44566666 65442 2221111111110 0001113445666666667777
Q ss_pred EecCCCCcc---eeee--ccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 426 FGCSEGSAE---STTL--EASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 426 w~~~~~~~~---~~~~--~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
|.-...... +..+ +.-....++++..|-..-++.|+..|.|.+
T Consensus 985 Yad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 985 YADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred EecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 742211000 0111 122344567888887777788888887776
No 291
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2.1e-07 Score=82.66 Aligned_cols=327 Identities=14% Similarity=0.162 Sum_probs=196.2
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
.-|.+.|+-+.-+. .+++.+++.||.++.|.-..-. ...+...+..|.
T Consensus 6 ymhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~is--------------------GvEfVKhFraHL----------- 53 (558)
T KOG0882|consen 6 YMHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRIS--------------------GVEFVKHFRAHL----------- 53 (558)
T ss_pred hcccceeeeEeeeh-hheEEeeecchhhhhcCCCCcc--------------------ceeehhhhHHHH-----------
Confidence 35888888877654 5699999999999999854311 112556677787
Q ss_pred cceeEEEEEeecCCCcEEEeeeC-CCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCcee-ecCCCccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTN-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSY-MANGGCGERN 189 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~g~~l~~~ 189 (515)
..|.+++- +.++..+.+.+. |..++++|+.+-.+....+....+. ...| ...|..+
T Consensus 54 -~~I~sl~~--S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg----------------~a~wv~skGd~~--- 111 (558)
T KOG0882|consen 54 -GVILSLAV--SYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPG----------------FAEWVTSKGDKI--- 111 (558)
T ss_pred -HHHHhhhc--cccceeEeeccCcccceeEEEeeccchhhhcccccCCC----------------ceEEecCCCCee---
Confidence 67888877 556767778777 9999999999876655444443331 0011 1111100
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCc-
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ- 267 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~- 267 (515)
..+.++.-.++.+.++| .... ..+...+..-|..+|..+.+++.+..+++. ..|.|..|..+..-+
T Consensus 112 -----s~IAVs~~~sg~i~VvD-----~~~d--~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qf 179 (558)
T KOG0882|consen 112 -----SLIAVSLFKSGKIFVVD-----GFGD--FCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQF 179 (558)
T ss_pred -----eeEEeecccCCCcEEEC-----CcCC--cCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccC
Confidence 01124455667788777 1111 111222235688999999999999999998 699999999873111
Q ss_pred ccc--eecccC----ccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeec-cCCCcc-----
Q 010206 268 SFN--IVDVKP----ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ-EAPGTR----- 335 (515)
Q Consensus 268 ~~~--~~~~~~----~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~-~~~~~~----- 335 (515)
+.. .+.++. ..+...+....++.|+|++ ..+.+-+.|..|++++++++++........... ..+...
T Consensus 180 Pr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~ 258 (558)
T KOG0882|consen 180 PRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMH 258 (558)
T ss_pred ccccccccccccchhhcccccccCccceEEcccc-CcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccce
Confidence 111 011111 0122335667899999999 899999999999999999998754322211110 000000
Q ss_pred ----------ccccccc-cceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCC------
Q 010206 336 ----------SFFTEII-ASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDS------ 398 (515)
Q Consensus 336 ----------~~~~~~~-~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 398 (515)
.-+..|. ..-+.+.|...|++|+.|+-=-|++.++.+ +...+.+...+..+.....+|....
T Consensus 259 VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~t-n~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~ 337 (558)
T KOG0882|consen 259 VELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDT-NTVVRILGKDEAIRFTRLSLYQGAQKSNLAA 337 (558)
T ss_pred eehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeec-CeEEEEeccchhhhhhhHHHHhhhhhccchh
Confidence 0011121 234567888899999999875689999986 5555444332211111111110000
Q ss_pred c---c-ceeeEEEcCCCCEEEEecCCCcEEEE
Q 010206 399 I---F-DKFECCLSGDGGRVATGSYSNLFRVF 426 (515)
Q Consensus 399 ~---~-~v~~~~~s~~~~~l~s~s~dg~i~iw 426 (515)
+ . .--.+.+.+|..+++++-..+++++|
T Consensus 338 ~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 338 LEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred hhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 0 0 00023467777788888888888888
No 292
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.76 E-value=2.8e-05 Score=68.56 Aligned_cols=146 Identities=11% Similarity=0.130 Sum_probs=87.7
Q ss_pred CCeEEEEecCCCCEEEEe-CC--------CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC
Q 010206 235 YHINSISNNSDGETFISA-DD--------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK 305 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d 305 (515)
...+.+++.++|++.++. .. +.|..++.. ++ .. .+...-...+.|+|+|++..++++-+..
T Consensus 86 ~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~--------~~~~~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 86 NRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-VT--------VVADGLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp EEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-EE--------EEEEEESSEEEEEEETTSSEEEEEETTT
T ss_pred CCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce-EE--------EEecCcccccceEECCcchheeeccccc
Confidence 457789999999977774 22 456667766 22 21 1122345578999999993344566778
Q ss_pred CeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeec
Q 010206 306 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHE 384 (515)
Q Consensus 306 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~ 384 (515)
+.|..|++..........+.+... ....+....+++..+|++.++.-. +.|.++|.. ++.+..+....
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~---------~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~--G~~~~~i~~p~ 224 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDF---------PGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD--GKLLREIELPV 224 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE----------SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT--SCEEEEEE-SS
T ss_pred ceeEEEeccccccceeeeeeEEEc---------CCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC--ccEEEEEcCCC
Confidence 899999986433211111112110 111134778999999988777544 899999976 77777776552
Q ss_pred cccccccccccCCCccceeeEEEc-CCCCEEEE
Q 010206 385 HLRPKLCDLYENDSIFDKFECCLS-GDGGRVAT 416 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s 416 (515)
.. +++++|. ++.+.|+.
T Consensus 225 ~~---------------~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 225 PR---------------PTNCAFGGPDGKTLYV 242 (246)
T ss_dssp SS---------------EEEEEEESTTSSEEEE
T ss_pred CC---------------EEEEEEECCCCCEEEE
Confidence 22 4589994 56565543
No 293
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.73 E-value=1e-05 Score=76.58 Aligned_cols=267 Identities=10% Similarity=0.048 Sum_probs=137.5
Q ss_pred CcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcc
Q 010206 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (515)
Q Consensus 126 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 205 (515)
+..+++++.++.|..+|..+++........... .. .+ ..++..+ +.++.++
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~---------~~------~p--~v~~~~v------------~v~~~~g 115 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERL---------SG------GV--GADGGLV------------FVGTEKG 115 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCc---------cc------ce--EEcCCEE------------EEEcCCC
Confidence 458888899999999999999877665544211 00 11 1123333 6667778
Q ss_pred cEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCC
Q 010206 206 SLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTE 284 (515)
Q Consensus 206 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 284 (515)
.+..+| ..+.+ ...... -...+.+.-.- .+..++.+ .++.+..||.++++...+.....+ .+. ...
T Consensus 116 ~l~ald--~~tG~------~~W~~~--~~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~-~~~-~~~ 182 (377)
T TIGR03300 116 EVIALD--AEDGK------ELWRAK--LSSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTP-ALT-LRG 182 (377)
T ss_pred EEEEEE--CCCCc------Eeeeec--cCceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCC-cee-ecC
Confidence 888777 32221 111110 01112111111 23345555 799999999988775443210000 000 000
Q ss_pred ceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccce-eEEEEccCCCEEEEEc-C
Q 010206 285 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI-SDIKFARNGRHILSRD-Y 362 (515)
Q Consensus 285 ~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~s~~~~~l~s~~-~ 362 (515)
. .+.... + ..++.+..++.+..+|.++++...+.. +...... .. .. ....+ ....+ .+..++.++ +
T Consensus 183 ~-~sp~~~-~--~~v~~~~~~g~v~ald~~tG~~~W~~~--~~~~~g~--~~-~~-~~~~~~~~p~~--~~~~vy~~~~~ 250 (377)
T TIGR03300 183 S-ASPVIA-D--GGVLVGFAGGKLVALDLQTGQPLWEQR--VALPKGR--TE-LE-RLVDVDGDPVV--DGGQVYAVSYQ 250 (377)
T ss_pred C-CCCEEE-C--CEEEEECCCCEEEEEEccCCCEeeeec--cccCCCC--Cc-hh-hhhccCCccEE--ECCEEEEEEcC
Confidence 0 111122 2 356778889999999999987543211 0000000 00 00 00000 01111 234555544 5
Q ss_pred CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeecc-C
Q 010206 363 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA-S 441 (515)
Q Consensus 363 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~-~ 441 (515)
+.+..||..+ ++.+-...... . .... .++..|+.++.||.++.+|..+++.+ ..... .
T Consensus 251 g~l~a~d~~t-G~~~W~~~~~~-~----------------~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~-W~~~~~~ 309 (377)
T TIGR03300 251 GRVAALDLRS-GRVLWKRDASS-Y----------------QGPA--VDDNRLYVTDADGVVVALDRRSGSEL-WKNDELK 309 (377)
T ss_pred CEEEEEECCC-CcEEEeeccCC-c----------------cCce--EeCCEEEEECCCCeEEEEECCCCcEE-Ecccccc
Confidence 9999999986 55443332110 0 0222 24667888889999999999887433 22211 1
Q ss_pred CCceeeEEECCCCCeeEeecCCCeEEEe
Q 010206 442 KNPMRRQVQTPSRPSRPLGSLSGVVRRV 469 (515)
Q Consensus 442 ~~~v~~~~~~~~~~~l~s~~~d~~v~l~ 469 (515)
......... .+..++.++.+|.+.++
T Consensus 310 ~~~~ssp~i--~g~~l~~~~~~G~l~~~ 335 (377)
T TIGR03300 310 YRQLTAPAV--VGGYLVVGDFEGYLHWL 335 (377)
T ss_pred CCccccCEE--ECCEEEEEeCCCEEEEE
Confidence 111122222 35688888999999883
No 294
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.72 E-value=5.4e-08 Score=83.37 Aligned_cols=154 Identities=16% Similarity=0.232 Sum_probs=110.4
Q ss_pred EEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceee
Q 010206 248 TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 327 (515)
Q Consensus 248 ~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 327 (515)
.+.+|-+..|-+-|++++-+. .+. .++.|.++.|...+ +++..|+.+|.|..+|+|.+..- ..+
T Consensus 227 hfs~G~sqqv~L~nvetg~~q---------sf~-sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG----~~~- 290 (425)
T KOG2695|consen 227 HFSVGLSQQVLLTNVETGHQQ---------SFQ-SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQG----NGW- 290 (425)
T ss_pred eecccccceeEEEEeeccccc---------ccc-cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccC----CCc-
Confidence 344566778888899877543 233 46778889999877 89999999999999999876211 000
Q ss_pred eccCCCccccccccccceeEEEEcc-CCCEEEEEc-CCeEEEEEeeCCCCC---eeeEeeeccccccccccccCCCccce
Q 010206 328 EQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRD-YMTLKLWDINMDSGP---VATFQVHEHLRPKLCDLYENDSIFDK 402 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~-~~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v 402 (515)
....--|.+.|+++..-. ++++|.+.+ +|+|++||++. .++ +..+.+|...-..+
T Consensus 291 -------~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~l------------ 350 (425)
T KOG2695|consen 291 -------CAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAYL------------ 350 (425)
T ss_pred -------ceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh-hhcccceeeeeccccccccc------------
Confidence 011233667888888766 677777765 49999999986 555 78888886542211
Q ss_pred eeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeec
Q 010206 403 FECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE 439 (515)
Q Consensus 403 ~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 439 (515)
-+-..+....++++++|...+||.++.+ .+..+++
T Consensus 351 -~~~v~~eeg~I~s~GdDcytRiWsl~~g-hLl~tip 385 (425)
T KOG2695|consen 351 -PAHVKEEEGSIFSVGDDCYTRIWSLDSG-HLLCTIP 385 (425)
T ss_pred -ccccccccceEEEccCeeEEEEEecccC-ceeeccC
Confidence 2455677788999999999999999988 4545544
No 295
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.72 E-value=3.8e-05 Score=65.01 Aligned_cols=154 Identities=18% Similarity=0.186 Sum_probs=88.2
Q ss_pred EEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCccccc
Q 010206 240 ISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC 319 (515)
Q Consensus 240 ~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~ 319 (515)
++.+.+|++||.-.|..|.+-..+..-... ..+...-+.....-+.++|+||+ .+||.+...|+|++||+....+.
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si---~~kcqVpkD~~PQWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~lf 78 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSI---IGKCQVPKDPNPQWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSELF 78 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchhe---eEEEecCCCCCchheEEEECCCC-cEEEEEcCCCeEEEEecccceeE
Confidence 567789999988888888877665432111 01111111123345789999998 99999999999999999754332
Q ss_pred ccccceeeeccCCCccccccccccceeEEEEccCC-------CEEEEEcCCeEEEEEeeC----CCCCeeeEeeeccccc
Q 010206 320 DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-------RHILSRDYMTLKLWDINM----DSGPVATFQVHEHLRP 388 (515)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-------~~l~s~~~~~i~iwd~~~----~~~~~~~~~~~~~~~~ 388 (515)
. .... ..........|..+.|-+-. .+|+..-.|.++=|-+.. ..+...++.....
T Consensus 79 ~-----I~p~-----~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~--- 145 (282)
T PF15492_consen 79 V-----IPPA-----MSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSH--- 145 (282)
T ss_pred E-----cCcc-----cccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEeccc---
Confidence 1 1110 00111223567777776421 233333346676666532 1222223322111
Q ss_pred cccccccCCCccceeeEEEcCCCCEEEEecC
Q 010206 389 KLCDLYENDSIFDKFECCLSGDGGRVATGSY 419 (515)
Q Consensus 389 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~ 419 (515)
...+|.++.++|..++|+.|+.
T Consensus 146 ---------yp~Gi~~~vy~p~h~LLlVgG~ 167 (282)
T PF15492_consen 146 ---------YPHGINSAVYHPKHRLLLVGGC 167 (282)
T ss_pred ---------CCCceeEEEEcCCCCEEEEecc
Confidence 1123669999999998877663
No 296
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.72 E-value=6.8e-07 Score=73.76 Aligned_cols=142 Identities=18% Similarity=0.214 Sum_probs=89.0
Q ss_pred CCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeC------CCcEEEEeCCCCCccccee
Q 010206 199 FPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISAD------DLRINLWNLEISNQSFNIV 272 (515)
Q Consensus 199 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~------d~~i~iwd~~~~~~~~~~~ 272 (515)
+.+..||.+.+.+ ... .. ...+.....|.+ -.+.+....++.+.++. -+..+.|+++..+...
T Consensus 105 ~~~~~dg~~~v~s--~~~---~~--~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~--- 173 (319)
T KOG4714|consen 105 CIGYADGSLAVFS--TDK---DL--ALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLI--- 173 (319)
T ss_pred EecCCCceEEEEe--chH---HH--hhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeeccccccccc---
Confidence 7788888888776 221 10 011110011111 12233334555665543 3445566665333221
Q ss_pred cccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEcc
Q 010206 273 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 352 (515)
Q Consensus 273 ~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 352 (515)
+.. . ....|.+++-+|..++++++|+.||.+-+||.++.... ...+..|+.+|..+.|+|
T Consensus 174 ---~~~-~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p---------------~S~l~ahk~~i~eV~FHp 233 (319)
T KOG4714|consen 174 ---PSK-K-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP---------------VSLLKAHKAEIWEVHFHP 233 (319)
T ss_pred ---ccc-c-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccch---------------HHHHHHhhhhhhheeccC
Confidence 111 1 12338999999987688999999999999999987432 234677889999999999
Q ss_pred -CCCEEEEEcC-CeEEEEEee
Q 010206 353 -NGRHILSRDY-MTLKLWDIN 371 (515)
Q Consensus 353 -~~~~l~s~~~-~~i~iwd~~ 371 (515)
++..|++++. |.+.-||..
T Consensus 234 k~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 234 KNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred CCchheeEecCCCcEEEEcCC
Confidence 6778888765 999999986
No 297
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.70 E-value=6.7e-05 Score=66.18 Aligned_cols=184 Identities=15% Similarity=0.160 Sum_probs=107.4
Q ss_pred eEEEEec-CCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccc-cCCceEEEEEecCCCcEEEEEecC--------C
Q 010206 237 INSISNN-SDGETFISADDLRINLWNLEISNQSFNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSK--------G 306 (515)
Q Consensus 237 v~~~~~~-~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~l~~~~~d--------g 306 (515)
...+++. +++.++++.. +.+.++|+.+++.. .+... .... .....+.+++.|+| ++.++.... |
T Consensus 42 ~~G~~~~~~~g~l~v~~~-~~~~~~d~~~g~~~-~~~~~---~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g 115 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADS-GGIAVVDPDTGKVT-VLADL---PDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPG 115 (246)
T ss_dssp EEEEEEECTTSEEEEEET-TCEEEEETTTTEEE-EEEEE---ETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSE
T ss_pred CceEEEEccCCEEEEEEc-CceEEEecCCCcEE-EEeec---cCCCcccCCCceEEEcCCC-CEEEEecCCCcccccccc
Confidence 5667777 5654444444 44556688766432 12111 0011 34567899999999 776665543 4
Q ss_pred eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-C-CeEEEEEeeCCCCCee---eEe
Q 010206 307 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVA---TFQ 381 (515)
Q Consensus 307 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~~~~---~~~ 381 (515)
.+..++.. ++.. .... .-...+.++|+|+++.|+..+ . +.|..+++......+. .+.
T Consensus 116 ~v~~~~~~-~~~~----~~~~-------------~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~ 177 (246)
T PF08450_consen 116 SVYRIDPD-GKVT----VVAD-------------GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFI 177 (246)
T ss_dssp EEEEEETT-SEEE----EEEE-------------EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEE
T ss_pred ceEEECCC-CeEE----EEec-------------CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEE
Confidence 56666665 3311 1111 113468999999999887654 3 8999999975343222 121
Q ss_pred eeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEE-CCCCCeeE
Q 010206 382 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ-TPSRPSRP 458 (515)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~ 458 (515)
....... ..-.++++.+|++.++.-..+.|.+++.+ + .++..+......+++++| .++.+.|.
T Consensus 178 ~~~~~~g------------~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G-~~~~~i~~p~~~~t~~~fgg~~~~~L~ 241 (246)
T PF08450_consen 178 DFPGGPG------------YPDGLAVDSDGNLWVADWGGGRIVVFDPD-G-KLLREIELPVPRPTNCAFGGPDGKTLY 241 (246)
T ss_dssp E-SSSSC------------EEEEEEEBTTS-EEEEEETTTEEEEEETT-S-CEEEEEE-SSSSEEEEEEESTTSSEEE
T ss_pred EcCCCCc------------CCCcceEcCCCCEEEEEcCCCEEEEECCC-c-cEEEEEcCCCCCEEEEEEECCCCCEEE
Confidence 1111100 01269999999988887788999999987 4 455555555557888888 45655443
No 298
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.68 E-value=5.1e-06 Score=79.26 Aligned_cols=258 Identities=14% Similarity=0.157 Sum_probs=158.6
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccc
Q 010206 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (515)
|...-.++.|+|.| +||.|+.. .|.|-|..+-+ .+..+.-|. .
T Consensus 14 ~~sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q-----------------------~iqsie~h~------------s 56 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQ-----------------------LIQSIELHQ------------S 56 (1062)
T ss_pred CcccccccccCccc-eEEEecCc-eEEEEehhhhh-----------------------hhhccccCc------------c
Confidence 33446789999988 78888754 68888876544 335556666 7
Q ss_pred eeEEEEEeecCC----------CcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCC
Q 010206 114 KINKIRWCQSAN----------SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (515)
Q Consensus 114 ~v~~l~~~~~~~----------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g 183 (515)
.|+.+.|.|-+- .-.++++...|.|.+||...+.....
T Consensus 57 ~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~-------------------------------- 104 (1062)
T KOG1912|consen 57 AVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINW-------------------------------- 104 (1062)
T ss_pred ceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhh--------------------------------
Confidence 799999976321 12345555667788887765432111
Q ss_pred CccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC---CCC-EEEEe-CCCcEE
Q 010206 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS---DGE-TFISA-DDLRIN 258 (515)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~-~l~s~-~d~~i~ 258 (515)
+..|..++..++|-+ +.+ .|++- ...++.
T Consensus 105 ----------------------------------------------l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lv 138 (1062)
T KOG1912|consen 105 ----------------------------------------------LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLV 138 (1062)
T ss_pred ----------------------------------------------hcCCCcchhheeeeeccCcchheeEEecCCcEEE
Confidence 244556667777754 443 34443 688999
Q ss_pred EEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCc----
Q 010206 259 LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT---- 334 (515)
Q Consensus 259 iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~---- 334 (515)
+|+..+++... +.........|+.+.|-+.+.+..-+..|.+.+-+.-.........+.+.....-..
T Consensus 139 LwntdtG~k~W--------k~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~l 210 (1062)
T KOG1912|consen 139 LWNTDTGEKFW--------KYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHL 210 (1062)
T ss_pred EEEccCCceee--------ccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhh
Confidence 99999887654 223334556779999977677777788888877766443332222222222111000
Q ss_pred -cccccc--ccc---------ceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccc
Q 010206 335 -RSFFTE--IIA---------SISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD 401 (515)
Q Consensus 335 -~~~~~~--~~~---------~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (515)
..+..+ ++. ....++|+|.-+.++-... ..+.++|++. ..++.+.....+...
T Consensus 211 ere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~-~~~l~vvpier~~ak------------- 276 (1062)
T KOG1912|consen 211 ERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEY-ECCLAVVPIERGGAK------------- 276 (1062)
T ss_pred hhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchh-hceeEEEEeccCCcc-------------
Confidence 000000 000 1234567886554444443 6899999986 777777766554322
Q ss_pred eeeEEEcCCCC--EEEEecCCCcEEEEecCC
Q 010206 402 KFECCLSGDGG--RVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 402 v~~~~~s~~~~--~l~s~s~dg~i~iw~~~~ 430 (515)
-+.+-|+++ .|+..-.||.+.+|-.+.
T Consensus 277 --fv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 277 --FVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred --eeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 466777655 688999999999998765
No 299
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.68 E-value=6.9e-07 Score=73.72 Aligned_cols=74 Identities=18% Similarity=0.290 Sum_probs=61.5
Q ss_pred CCeEEEEecCCCCEEEE-e-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEe
Q 010206 235 YHINSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 312 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd 312 (515)
..|.+++-+|..+.++. | +||.+.+||.+....+. ..+..|+.+|..+-|+|..+..|++++.||.+.-||
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~-------S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPV-------SLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchH-------HHHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence 34899999997665554 5 89999999998764333 256789999999999999889999999999999999
Q ss_pred cCc
Q 010206 313 MRQ 315 (515)
Q Consensus 313 ~~~ 315 (515)
-.+
T Consensus 253 as~ 255 (319)
T KOG4714|consen 253 AST 255 (319)
T ss_pred CCC
Confidence 874
No 300
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.61 E-value=6e-08 Score=93.23 Aligned_cols=218 Identities=14% Similarity=0.252 Sum_probs=137.2
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
..|....+|++|+-+.+.|++|+..|.|++|++.+|... ....+|.
T Consensus 1098 rd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e-----------------------~s~ncH~----------- 1143 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME-----------------------ESVNCHQ----------- 1143 (1516)
T ss_pred hccccceeeEEeecCCceEEeeeccceEEEEEccCcccc-----------------------ccccccc-----------
Confidence 467789999999999999999999999999999988743 4567787
Q ss_pred cceeEEEEEeecCCCcEEEeeeCC-C-eEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTND-K-TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d-~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..|+.+.- +.+|..+++.+.- . -..+|++.+--
T Consensus 1144 -SavT~veP--s~dgs~~Ltsss~S~PlsaLW~~~s~~------------------------------------------ 1178 (1516)
T KOG1832|consen 1144 -SAVTLVEP--SVDGSTQLTSSSSSSPLSALWDASSTG------------------------------------------ 1178 (1516)
T ss_pred -cccccccc--cCCcceeeeeccccCchHHHhcccccc------------------------------------------
Confidence 77888876 5667677665432 2 45677765410
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
.++..| ..-.++.|+...+.-+.| ......+||+.+...+
T Consensus 1179 ----------------------------------~~~Hsf-----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1179 ----------------------------------GPRHSF-----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPL 1219 (1516)
T ss_pred ----------------------------------Cccccc-----cccceeehhhhHHHHHhcccccceEEEecccCcHH
Confidence 011111 122345565543333334 4456788999988766
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
...+.- ..+.+..-.+..|+|++ .+++ .|| .+||++..+.+ +.|+.-. .-..=
T Consensus 1220 ~tylt~----~~~~~y~~n~a~FsP~D-~LIl---ndG--vLWDvR~~~aI----h~FD~ft-------------~~~~G 1272 (1516)
T KOG1832|consen 1220 QTYLTD----TVTSSYSNNLAHFSPCD-TLIL---NDG--VLWDVRIPEAI----HRFDQFT-------------DYGGG 1272 (1516)
T ss_pred HHhcCc----chhhhhhccccccCCCc-ceEe---eCc--eeeeeccHHHH----hhhhhhe-------------ecccc
Confidence 442210 01112222678899998 6766 566 47999886543 2233211 11223
Q ss_pred EEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEE
Q 010206 349 KFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT 416 (515)
Q Consensus 349 ~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 416 (515)
.|+|.|..++.-+. |||+++ .+.+.....-.. ..+.|+..|..++.
T Consensus 1273 ~FHP~g~eVIINSE----IwD~RT-F~lLh~VP~Ldq-----------------c~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1273 GFHPSGNEVIINSE----IWDMRT-FKLLHSVPSLDQ-----------------CAVTFNSTGDVMYA 1318 (1516)
T ss_pred cccCCCceEEeech----hhhhHH-HHHHhcCccccc-----------------eEEEeccCccchhh
Confidence 58999998888664 999997 555554433322 16788888876553
No 301
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.60 E-value=6.2e-05 Score=65.77 Aligned_cols=60 Identities=17% Similarity=0.276 Sum_probs=43.2
Q ss_pred cccceeEEEEccCCCEEEEEc-C-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEec
Q 010206 341 IIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 418 (515)
Q Consensus 341 ~~~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s 418 (515)
..+.+-+|++++++.++++.+ . +.+.+||..+ ++.+......+.. .++-.+++ +++|.+
T Consensus 215 l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t-g~~~~~~~l~D~c-----------------Gva~~~~~-f~~ssG 275 (305)
T PF07433_consen 215 LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT-GRLLGSVPLPDAC-----------------GVAPTDDG-FLVSSG 275 (305)
T ss_pred hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC-CCEeeccccCcee-----------------eeeecCCc-eEEeCC
Confidence 346799999999999888765 3 9999999986 7766665544422 56666666 666555
Q ss_pred C
Q 010206 419 Y 419 (515)
Q Consensus 419 ~ 419 (515)
.
T Consensus 276 ~ 276 (305)
T PF07433_consen 276 Q 276 (305)
T ss_pred C
Confidence 4
No 302
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=2.7e-06 Score=75.87 Aligned_cols=246 Identities=18% Similarity=0.187 Sum_probs=138.7
Q ss_pred ccCcCCeEEEEecCCCCEEEEe-C-CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCC-cEEEEE-ecCC
Q 010206 231 HAHDYHINSISNNSDGETFISA-D-DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC-NMLAYS-SSKG 306 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~s~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~-~~l~~~-~~dg 306 (515)
..|-..|.+++.+.++-++.+. + |..++++|++.-... +.+ .+.-..+.+. ...+|... ..++.+ -.++
T Consensus 50 raHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dmi-nmi-----KL~~lPg~a~-wv~skGd~~s~IAVs~~~sg 122 (558)
T KOG0882|consen 50 RAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMI-NMI-----KLVDLPGFAE-WVTSKGDKISLIAVSLFKSG 122 (558)
T ss_pred HHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchh-hhc-----ccccCCCceE-EecCCCCeeeeEEeecccCC
Confidence 4677888899999999999996 5 999999999865432 111 1111122222 22233211 134433 3478
Q ss_pred eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecc
Q 010206 307 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEH 385 (515)
Q Consensus 307 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~ 385 (515)
.|.++|-....... ..+-.-|.++|.++.+.+-+..+++.+. |.|.-|.... +.+.......
T Consensus 123 ~i~VvD~~~d~~q~--------------~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~---~~qfPr~~l~ 185 (558)
T KOG0882|consen 123 KIFVVDGFGDFCQD--------------GYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG---PFQFPRTNLN 185 (558)
T ss_pred CcEEECCcCCcCcc--------------ceecccccCceEEEEeeccccceeeccccceeEeecCCC---cccCcccccc
Confidence 89999976543211 0112346789999999999999999876 9999998862 1111111000
Q ss_pred ccccc-cccccC-CCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCC
Q 010206 386 LRPKL-CDLYEN-DSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS 463 (515)
Q Consensus 386 ~~~~~-~~~~~~-~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 463 (515)
...+. ..+|.. ++-.-..++.|+|+|..+.+-+.|..|++++.+++ .+.+.+......-... |..++-+++
T Consensus 186 ~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG-klvqeiDE~~t~~~~q---~ks~y~l~~--- 258 (558)
T KOG0882|consen 186 FELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG-KLVQEIDEVLTDAQYQ---PKSPYGLMH--- 258 (558)
T ss_pred ccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc-hhhhhhhccchhhhhc---cccccccce---
Confidence 00000 001110 11111248999999999999999999999999988 4444444322211111 111111110
Q ss_pred CeEEEecCCCCCccccCCcccccc-CCeeEEEEcCCCCEEEEEcCCcEEEEe
Q 010206 464 GVVRRVKGADNSALDANGNAFDFS-MKLLHLAWHPSENSIACAASNSLYMYY 514 (515)
Q Consensus 464 ~~v~l~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~~~~~i~~ 514 (515)
+.+ +.+.. ...+.-.+. ..-+.+.|...+++|.-++-=|+.+++
T Consensus 259 --Vel--gRRma---verelek~~~~~~~~~~fdes~~flly~t~~gikvin 303 (558)
T KOG0882|consen 259 --VEL--GRRMA---VERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVIN 303 (558)
T ss_pred --eeh--hhhhh---HHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEE
Confidence 111 01100 000111122 234678899999999999888887775
No 303
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.54 E-value=1.9e-07 Score=55.21 Aligned_cols=33 Identities=21% Similarity=0.450 Sum_probs=31.4
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEE
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFE 63 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~ 63 (515)
..+|.++|++++|+|++.+|++|+.|+.|++||
T Consensus 7 ~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 7 FRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 458999999999999999999999999999997
No 304
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.52 E-value=0.00012 Score=64.03 Aligned_cols=191 Identities=14% Similarity=0.117 Sum_probs=112.3
Q ss_pred EecCCCCEEEEe-C-----CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEec----------
Q 010206 241 SNNSDGETFISA-D-----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS---------- 304 (515)
Q Consensus 241 ~~~~~~~~l~s~-~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~---------- 304 (515)
.|++||++|.+. . .|.|-|||....-... ..+..|.-....+.+.||+ ..|+.+..
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri-------~E~~s~GIGPHel~l~pDG-~tLvVANGGI~Thpd~GR 128 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRI-------GEFPSHGIGPHELLLMPDG-ETLVVANGGIETHPDSGR 128 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEE-------eEecCCCcChhhEEEcCCC-CEEEEEcCCCccCcccCc
Confidence 589999999986 2 5889999998332221 2455566667888999998 55555421
Q ss_pred --------CCeEEEEecCcccccccccceeeeccCCCccccc--cccccceeEEEEccCCCEEEEEcC-C-------eEE
Q 010206 305 --------KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF--TEIIASISDIKFARNGRHILSRDY-M-------TLK 366 (515)
Q Consensus 305 --------dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~s~~~-~-------~i~ 366 (515)
+..+.+-|.++++++.+ . .+ .-|.-.|.-+++.++|..++..-+ | -|-
T Consensus 129 ~kLNl~tM~psL~~ld~~sG~ll~q-------~-------~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva 194 (305)
T PF07433_consen 129 AKLNLDTMQPSLVYLDARSGALLEQ-------V-------ELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVA 194 (305)
T ss_pred eecChhhcCCceEEEecCCCceeee-------e-------ecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEE
Confidence 12233344444443221 1 12 225567999999999988887532 2 223
Q ss_pred EEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEec-CCCcEEEEecCCCCcceeeeccCCCce
Q 010206 367 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAESTTLEASKNPM 445 (515)
Q Consensus 367 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s-~dg~i~iw~~~~~~~~~~~~~~~~~~v 445 (515)
+++. +..+..+.........+ . .. +-++++++++.+++..+ ..|.+.+||..++..+ .. .....+
T Consensus 195 ~~~~---g~~~~~~~~p~~~~~~l-~----~Y---~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~-~~--~~l~D~ 260 (305)
T PF07433_consen 195 LHRR---GGALRLLPAPEEQWRRL-N----GY---IGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLL-GS--VPLPDA 260 (305)
T ss_pred EEcC---CCcceeccCChHHHHhh-C----Cc---eEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEe-ec--cccCce
Confidence 3332 23333333222111000 0 11 33899999999886555 7789999999988322 11 223345
Q ss_pred eeEEECCCCCeeEeecCCCeEEE
Q 010206 446 RRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 446 ~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
..++..+++ +++|.+....+.+
T Consensus 261 cGva~~~~~-f~~ssG~G~~~~~ 282 (305)
T PF07433_consen 261 CGVAPTDDG-FLVSSGQGQLIRL 282 (305)
T ss_pred eeeeecCCc-eEEeCCCccEEEc
Confidence 667777776 6666665555554
No 305
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.51 E-value=2.9e-06 Score=74.65 Aligned_cols=150 Identities=7% Similarity=0.033 Sum_probs=101.1
Q ss_pred eeEEEEccCCCEEEEEcC-CeEEEEEeeCCCC---CeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEE---Ee
Q 010206 345 ISDIKFARNGRHILSRDY-MTLKLWDINMDSG---PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA---TG 417 (515)
Q Consensus 345 i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~---s~ 417 (515)
...+..++.++++|.+.. ....++++....+ +.......... +.+.|-.+...+. ..
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~----------------~ai~~~~~~~sv~v~dka 128 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRP----------------TAISFIREDTSVLVADKA 128 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCc----------------ceeeeeeccceEEEEeec
Confidence 445567788999998865 6767777764232 12222211111 1444544444433 34
Q ss_pred cCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcC
Q 010206 418 SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHP 497 (515)
Q Consensus 418 s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 497 (515)
++...+.+|....+ ....+-+|-+-+..++++||.++++++..|..||+ .+-+....+..-.++|+..|..++.-+
T Consensus 129 gD~~~~di~s~~~~--~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRv--s~ypa~f~IesfclGH~eFVS~isl~~ 204 (390)
T KOG3914|consen 129 GDVYSFDILSADSG--RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRV--SRYPATFVIESFCLGHKEFVSTISLTD 204 (390)
T ss_pred CCceeeeeeccccc--CcchhhhhhhhhheeeecCCCCEEEEecCCceEEE--EecCcccchhhhccccHhheeeeeecc
Confidence 45566667776643 22456699999999999999999999999999999 333332233444568999999999988
Q ss_pred CCCEEEEEcCCcEEEEe
Q 010206 498 SENSIACAASNSLYMYY 514 (515)
Q Consensus 498 ~~~~la~~~~~~~~i~~ 514 (515)
+..++-.++++.+++|+
T Consensus 205 ~~~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 205 NYLLLSGSGDKTLRLWD 221 (390)
T ss_pred CceeeecCCCCcEEEEe
Confidence 87766677788899996
No 306
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.49 E-value=5.4e-07 Score=77.39 Aligned_cols=162 Identities=10% Similarity=0.123 Sum_probs=106.2
Q ss_pred EEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCC
Q 010206 119 RWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS 198 (515)
Q Consensus 119 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 198 (515)
+|+-..-+-+ ++.+.+..+-+-|++++-...... .+.|+ ++.|...+..+
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~~qsf~s----------ksDVf-------AlQf~~s~nLv------------ 267 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQQSFQS----------KSDVF-------ALQFAGSDNLV------------ 267 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeeccccccccc----------chhHH-------HHHhcccCCee------------
Confidence 5543333334 556667788888888875433321 34444 55555555555
Q ss_pred CCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC-CCCEEEEe-CCCcEEEEeCCCCCcccceecccC
Q 010206 199 FPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVKP 276 (515)
Q Consensus 199 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~ 276 (515)
+.|+..|.|-..|+ ....... +.+... ..|...|+++..-. ++++|+++ -+|+|.+||.+.-+....+.
T Consensus 268 ~~GcRngeI~~iDL--R~rnqG~-~~~a~r--lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~---- 338 (425)
T KOG2695|consen 268 FNGCRNGEIFVIDL--RCRNQGN-GWCAQR--LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVM---- 338 (425)
T ss_pred EecccCCcEEEEEe--eecccCC-CcceEE--EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhccccee----
Confidence 99999999999994 3321111 122222 36889999998766 67777777 69999999998766533332
Q ss_pred ccccccCCceEEEE--EecCCCcEEEEEecCCeEEEEecCccccccc
Q 010206 277 ANMEDLTEVITSAE--FHPTHCNMLAYSSSKGSIRLIDMRQSALCDT 321 (515)
Q Consensus 277 ~~~~~~~~~i~~i~--~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 321 (515)
++++|...-.-+- ..+.. ..+++++.|...|+|.++.+.+..+
T Consensus 339 -qYeGHvN~~a~l~~~v~~ee-g~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 339 -QYEGHVNLSAYLPAHVKEEE-GSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred -eeeccccccccccccccccc-ceEEEccCeeEEEEEecccCceeec
Confidence 6677754433332 34555 6888899999999999999887543
No 307
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.45 E-value=5e-05 Score=76.60 Aligned_cols=240 Identities=14% Similarity=0.114 Sum_probs=133.6
Q ss_pred cCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEe
Q 010206 234 DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 312 (515)
Q Consensus 234 ~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd 312 (515)
...|.++.|..+...++.+ .+|.|.+-|..+.... ....-...|.+++|+||+ ..++..+.++++.+-.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e---------ivg~vd~GI~aaswS~De-e~l~liT~~~tll~mT 137 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE---------IVGNVDNGISAASWSPDE-ELLALITGRQTLLFMT 137 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee---------eeeeccCceEEEeecCCC-cEEEEEeCCcEEEEEe
Confidence 3689999999999888888 8999999988765432 112246789999999998 8888888888776644
Q ss_pred cCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccc
Q 010206 313 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCD 392 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 392 (515)
- +...+.. +.++.... -.+..-.+-|-... .=+-|+.|+....+.....+.......+..
T Consensus 138 ~-~f~~i~E--~~L~~d~~---------~~sk~v~VGwGrke-Tqfrgs~gr~~~~~~~~~ek~~~~~~~~~~------- 197 (1265)
T KOG1920|consen 138 K-DFEPIAE--KPLDADDE---------RKSKFVNVGWGRKE-TQFRGSEGRQAARQKIEKEKALEQIEQDDH------- 197 (1265)
T ss_pred c-cccchhc--cccccccc---------cccccceecccccc-eeeecchhhhcccccccccccccchhhccC-------
Confidence 2 2222211 00000000 00112223332111 111122222222111110110000011111
Q ss_pred cccCCCccceeeEEEcCCCCEEEEe-----cCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeec---CCC
Q 010206 393 LYENDSIFDKFECCLSGDGGRVATG-----SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGS---LSG 464 (515)
Q Consensus 393 ~~~~~~~~~v~~~~~s~~~~~l~s~-----s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~---~d~ 464 (515)
-+++.|-.||+++|+. ..-..|++||.+ + .+..+-+....--.+++|-|.|..+++-. .|+
T Consensus 198 ---------~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g-~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~ 266 (1265)
T KOG1920|consen 198 ---------KTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-G-ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDS 266 (1265)
T ss_pred ---------CceEEEccCCcEEEEEEEeccCCceeEEEeccc-c-hhhcccCcccccccceeecCCCCeEeeeeecCCCC
Confidence 1379999999999873 233799999987 3 34333333334445889999999888763 345
Q ss_pred eEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEE---EcCCc-EEEEe
Q 010206 465 VVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIAC---AASNS-LYMYY 514 (515)
Q Consensus 465 ~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~---~~~~~-~~i~~ 514 (515)
.|.+++-+-+...++......-...+..++|+.++..||+ ...+. +.+|.
T Consensus 267 ~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt 320 (1265)
T KOG1920|consen 267 DIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWT 320 (1265)
T ss_pred cEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEE
Confidence 5666332222221222211112334899999999999997 44444 88885
No 308
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.43 E-value=6.8e-07 Score=52.76 Aligned_cols=34 Identities=35% Similarity=0.526 Sum_probs=32.3
Q ss_pred cccccCCceEEEEEecCCCcEEEEEecCCeEEEEe
Q 010206 278 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 312 (515)
Q Consensus 278 ~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd 312 (515)
.+.+|...|++++|+|++ .+|++++.|+.|++||
T Consensus 6 ~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 6 TFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred EEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence 678899999999999998 9999999999999997
No 309
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.41 E-value=0.00012 Score=64.24 Aligned_cols=153 Identities=14% Similarity=0.130 Sum_probs=78.0
Q ss_pred EEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeee
Q 010206 249 FISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 328 (515)
Q Consensus 249 l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 328 (515)
++...++.++.+|..+++...+..... .+... ..........+ ..++.+..++.|..+|+++|+...+. ..
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~---~~~~~-~~~~~~~~~~~-~~~~~~~~~g~l~~~d~~tG~~~w~~----~~ 150 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTS---SPPAG-VRSSSSPAVDG-DRLYVGTSSGKLVALDPKTGKLLWKY----PV 150 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-S---SCTCS-TB--SEEEEET-TEEEEEETCSEEEEEETTTTEEEEEE----ES
T ss_pred ccccceeeeEecccCCcceeeeecccc---ccccc-cccccCceEec-CEEEEEeccCcEEEEecCCCcEEEEe----ec
Confidence 333367788888888777655421000 00011 11222222225 67888888999999999999865431 11
Q ss_pred ccCCCccccccccccceeEEEEccCCCEEEEEcCCe-EEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEE
Q 010206 329 QEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMT-LKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 407 (515)
Q Consensus 329 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 407 (515)
........ +. ....+..-....++..+++..++. +.+ |+.+ ++.+ +...... . ....
T Consensus 151 ~~~~~~~~-~~-~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~t-g~~~--w~~~~~~---------------~-~~~~ 208 (238)
T PF13360_consen 151 GEPRGSSP-IS-SFSDINGSPVISDGRVYVSSGDGRVVAV-DLAT-GEKL--WSKPISG---------------I-YSLP 208 (238)
T ss_dssp STT-SS---EE-EETTEEEEEECCTTEEEEECCTSSEEEE-ETTT-TEEE--EEECSS----------------E-CECE
T ss_pred CCCCCCcc-ee-eecccccceEEECCEEEEEcCCCeEEEE-ECCC-CCEE--EEecCCC---------------c-cCCc
Confidence 11000000 00 001122222223453333444554 555 8886 4422 2211111 0 1224
Q ss_pred cCCCCEEEEecCCCcEEEEecCCCC
Q 010206 408 SGDGGRVATGSYSNLFRVFGCSEGS 432 (515)
Q Consensus 408 s~~~~~l~s~s~dg~i~iw~~~~~~ 432 (515)
..++..|+.++.++.|..||+++++
T Consensus 209 ~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 209 SVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp ECCCTEEEEEETTTEEEEEETTTTE
T ss_pred eeeCCEEEEEeCCCEEEEEECCCCC
Confidence 5677888888899999999999984
No 310
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=1.5e-05 Score=76.54 Aligned_cols=192 Identities=14% Similarity=0.158 Sum_probs=120.7
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
+-..+.++|++++ +++|+-|+-+|.|++++...... ..-.|.
T Consensus 36 ~~~~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~~-------------------------~~~~~s----------- 77 (846)
T KOG2066|consen 36 FLQNDAISCCAVH--DKFFALGTHRGAVYLTTCQGNPK-------------------------TNFDHS----------- 77 (846)
T ss_pred HHhhhHHHHHHhh--cceeeeccccceEEEEecCCccc-------------------------cccccc-----------
Confidence 4456788999987 67999999999999999754321 011121
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
.. ..+|.++++|+.||+|.|-.+.+.+......+
T Consensus 78 -~~--------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df------------------------------------- 111 (846)
T KOG2066|consen 78 -SS--------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDF------------------------------------- 111 (846)
T ss_pred -cc--------ccCCceEEEecCCCcEEEeeccCCccceeEec-------------------------------------
Confidence 11 34688999999999999988776653332222
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC-----CCEEEEe-CCCcEEEEeCCCC
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-----GETFISA-DDLRINLWNLEIS 265 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~s~-~d~~i~iwd~~~~ 265 (515)
..++.+++++|+ .+.+++| .-| +.++.-+-.
T Consensus 112 ------------------------------------------~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wl 148 (846)
T KOG2066|consen 112 ------------------------------------------KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWL 148 (846)
T ss_pred ------------------------------------------CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhh
Confidence 245677888886 5567776 455 777654322
Q ss_pred CcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccce
Q 010206 266 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 345 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 345 (515)
+.... ..+....++|.++.|. | +++|.++.+| |++||+.+++.+......-. .+. .. .--
T Consensus 149 gnk~~------v~l~~~eG~I~~i~W~--g-~lIAWand~G-v~vyd~~~~~~l~~i~~p~~---~~R-~e------~fp 208 (846)
T KOG2066|consen 149 GNKDS------VVLSEGEGPIHSIKWR--G-NLIAWANDDG-VKVYDTPTRQRLTNIPPPSQ---SVR-PE------LFP 208 (846)
T ss_pred cCccc------eeeecCccceEEEEec--C-cEEEEecCCC-cEEEeccccceeeccCCCCC---CCC-cc------cCC
Confidence 22211 1344567899999997 3 6888887776 79999988765432111100 000 00 123
Q ss_pred eEEEEccCCCEEEEEcCCeEEEEEee
Q 010206 346 SDIKFARNGRHILSRDYMTLKLWDIN 371 (515)
Q Consensus 346 ~~~~~s~~~~~l~s~~~~~i~iwd~~ 371 (515)
..+.|.++.+ |+.|-..+|+|..++
T Consensus 209 phl~W~~~~~-LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 209 PHLHWQDEDR-LVIGWGDSVKICSIK 233 (846)
T ss_pred CceEecCCCe-EEEecCCeEEEEEEe
Confidence 4577876654 444433488888887
No 311
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.35 E-value=6.1e-07 Score=86.59 Aligned_cols=191 Identities=14% Similarity=0.182 Sum_probs=127.4
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
+....++++|+ .+.++|++|+..|.|+++++.+|.....
T Consensus 1100 ~~~~fTc~afs--~~~~hL~vG~~~Geik~~nv~sG~~e~s--------------------------------------- 1138 (1516)
T KOG1832|consen 1100 ETALFTCIAFS--GGTNHLAVGSHAGEIKIFNVSSGSMEES--------------------------------------- 1138 (1516)
T ss_pred cccceeeEEee--cCCceEEeeeccceEEEEEccCcccccc---------------------------------------
Confidence 34789999994 5567999999999999999988752111
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe---CCCcEEEEeCCCCCc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA---DDLRINLWNLEISNQ 267 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~---~d~~i~iwd~~~~~~ 267 (515)
...|...|+-+.-+.+|..+++. +.--..+|++.....
T Consensus 1139 ---------------------------------------~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~ 1179 (1516)
T KOG1832|consen 1139 ---------------------------------------VNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGG 1179 (1516)
T ss_pred ---------------------------------------ccccccccccccccCCcceeeeeccccCchHHHhccccccC
Confidence 24677888888888888888775 234678899875322
Q ss_pred ccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 347 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (515)
... + -..-.++.|+... ..-+.|+......+||+.++..+.+........ ...-++
T Consensus 1180 ~~H-------s----f~ed~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~------------~y~~n~ 1235 (1516)
T KOG1832|consen 1180 PRH-------S----FDEDKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQTYLTDTVTS------------SYSNNL 1235 (1516)
T ss_pred ccc-------c----ccccceeehhhhH-HHHHhcccccceEEEecccCcHHHHhcCcchhh------------hhhccc
Confidence 211 1 2334678898765 455556666788999999987665432211111 112367
Q ss_pred EEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 348 IKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 348 ~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
..|+|+..+++-- | .+||++. .+.+..|..-... ..-.|+|.|..++..+. |||
T Consensus 1236 a~FsP~D~LIlnd--G--vLWDvR~-~~aIh~FD~ft~~----------------~~G~FHP~g~eVIINSE-----IwD 1289 (1516)
T KOG1832|consen 1236 AHFSPCDTLILND--G--VLWDVRI-PEAIHRFDQFTDY----------------GGGGFHPSGNEVIINSE-----IWD 1289 (1516)
T ss_pred cccCCCcceEeeC--c--eeeeecc-HHHHhhhhhheec----------------ccccccCCCceEEeech-----hhh
Confidence 8899988777642 2 5899986 4545444322211 14579999999888664 899
Q ss_pred cCCC
Q 010206 428 CSEG 431 (515)
Q Consensus 428 ~~~~ 431 (515)
+++-
T Consensus 1290 ~RTF 1293 (1516)
T KOG1832|consen 1290 MRTF 1293 (1516)
T ss_pred hHHH
Confidence 9986
No 312
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.32 E-value=0.0011 Score=67.28 Aligned_cols=222 Identities=13% Similarity=0.157 Sum_probs=128.1
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccccee
Q 010206 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (515)
Q Consensus 36 ~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (515)
+.|.++.|-.+++.++.+...|.|.+-|..+.... ..+. ++..|
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-------------------------ivg~-----------vd~GI 112 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-------------------------IVGN-----------VDNGI 112 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee-------------------------eeee-----------ccCce
Confidence 57899999999998999999999988887665431 1121 12679
Q ss_pred EEEEEeecCCCcEEEeeeCCCeEEEEEcc----CCeeEE-----------------EeeccCCcccCCCC-----CCcc-
Q 010206 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQ----EKKVKK-----------------VFDWNVHPEKAAGN-----GPIF- 168 (515)
Q Consensus 116 ~~l~~~~~~~~~~l~~~~~d~~i~iwd~~----~~~~~~-----------------~~~~~~~~~~~~~~-----~~v~- 168 (515)
.+++| ++|++.++..+..+++.+-+-. ..+... ...++......... ....
T Consensus 113 ~aasw--S~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~ 190 (1265)
T KOG1920|consen 113 SAASW--SPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALE 190 (1265)
T ss_pred EEEee--cCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccccccc
Confidence 99999 4566788888888887765421 111110 00011000000000 0000
Q ss_pred --CCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCC
Q 010206 169 --GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG 246 (515)
Q Consensus 169 --~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 246 (515)
.....-+++.|.-||++..+... ........|++|| .++...... ....+.=.+++|-|.|
T Consensus 191 ~~~~~~~~~~IsWRgDg~~fAVs~~-------~~~~~~RkirV~d-----rEg~Lns~s-----e~~~~l~~~LsWkPsg 253 (1265)
T KOG1920|consen 191 QIEQDDHKTSISWRGDGEYFAVSFV-------ESETGTRKIRVYD-----REGALNSTS-----EPVEGLQHSLSWKPSG 253 (1265)
T ss_pred chhhccCCceEEEccCCcEEEEEEE-------eccCCceeEEEec-----ccchhhccc-----CcccccccceeecCCC
Confidence 01222235778888877632211 1133337999998 332211111 1112333579999999
Q ss_pred CEEEEe----CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEE---EecCCeEEEEecCcccc
Q 010206 247 ETFISA----DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY---SSSKGSIRLIDMRQSAL 318 (515)
Q Consensus 247 ~~l~s~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~---~~~dg~i~~wd~~~~~~ 318 (515)
.++++- +|+.|.++..+.-..- .+ .+ .+......+..++|+.++ .+|+. ......|++|-+.+-.-
T Consensus 254 s~iA~iq~~~sd~~IvffErNGL~hg-~f-~l---~~p~de~~ve~L~Wns~s-diLAv~~~~~e~~~v~lwt~~NyhW 326 (1265)
T KOG1920|consen 254 SLIAAIQCKTSDSDIVFFERNGLRHG-EF-VL---PFPLDEKEVEELAWNSNS-DILAVVTSNLENSLVQLWTTGNYHW 326 (1265)
T ss_pred CeEeeeeecCCCCcEEEEecCCcccc-cc-cc---CCcccccchheeeecCCC-CceeeeecccccceEEEEEecCeEE
Confidence 999983 4778999986532211 10 00 122233448999999998 78887 55566699999877543
No 313
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=0.00032 Score=68.42 Aligned_cols=125 Identities=13% Similarity=0.137 Sum_probs=80.4
Q ss_pred cCCeEEEEecCCCCEEEEe-CCCcEEEEe--CCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEE
Q 010206 234 DYHINSISNNSDGETFISA-DDLRINLWN--LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 310 (515)
Q Consensus 234 ~~~v~~~~~~~~~~~l~s~-~d~~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~ 310 (515)
..++.+++.+.+-+.+++| .+|.|..+. +...+.... .-.....++|+.+++..++ ..++-...-..|.+
T Consensus 125 ~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~------~~~~~~~~pITgL~~~~d~-~s~lFv~Tt~~V~~ 197 (933)
T KOG2114|consen 125 PSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQ------DYSHRGKEPITGLALRSDG-KSVLFVATTEQVML 197 (933)
T ss_pred CCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccce------eeeccCCCCceeeEEecCC-ceeEEEEecceeEE
Confidence 4678899999999999999 999999884 221111110 0112347889999999888 44233344457899
Q ss_pred EecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEe
Q 010206 311 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQ 381 (515)
Q Consensus 311 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~ 381 (515)
|.+.... .. .+ ++..|..++.|..+++....++.+....+.+||... .++...+.
T Consensus 198 y~l~gr~-p~--~~------------~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~-~~~cfaf~ 252 (933)
T KOG2114|consen 198 YSLSGRT-PS--LK------------VLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDG-RGPCFAFE 252 (933)
T ss_pred EEecCCC-cc--ee------------eeccCCccceeeecCCCCccEEEecCceEEEEcCCC-cceeeeec
Confidence 9987432 10 11 133444678999998755545555556899999873 44444444
No 314
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.29 E-value=0.0014 Score=63.29 Aligned_cols=107 Identities=8% Similarity=0.074 Sum_probs=69.1
Q ss_pred ceeEEEEccCCCEEEEEcC--CeEEEEEeeCCCCCe-------eeEeeeccccccccccccCCCccceeeEEEcCCCCEE
Q 010206 344 SISDIKFARNGRHILSRDY--MTLKLWDINMDSGPV-------ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 414 (515)
Q Consensus 344 ~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 414 (515)
....+.++|||+++++++. .++.|.|+.+....+ ..+...... .-.+ ...+|+++|+..
T Consensus 322 sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev--------GlGP----LHTaFDg~G~ay 389 (635)
T PRK02888 322 NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL--------GLGP----LHTAFDGRGNAY 389 (635)
T ss_pred CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc--------CCCc----ceEEECCCCCEE
Confidence 4678999999999998754 999999998622110 111111100 0011 157899999988
Q ss_pred EEecCCCcEEEEecCCC---------CcceeeeccCCCceeeE-----EECCCCCeeEeecC
Q 010206 415 ATGSYSNLFRVFGCSEG---------SAESTTLEASKNPMRRQ-----VQTPSRPSRPLGSL 462 (515)
Q Consensus 415 ~s~s~dg~i~iw~~~~~---------~~~~~~~~~~~~~v~~~-----~~~~~~~~l~s~~~ 462 (515)
.|-.-|..|-.|++... ...+..+..|..+-.-. .-.|+|+||++.+.
T Consensus 390 tslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 390 TTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred EeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 88889999999999861 12334455555444322 23689999988754
No 315
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.27 E-value=0.00029 Score=65.67 Aligned_cols=281 Identities=15% Similarity=0.123 Sum_probs=133.6
Q ss_pred ceEEEEECCCCCeEEeecCCCeEEEEEcccCcccC--ccccCcccc---------cc---cc------cCCccceeeeec
Q 010206 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNG--GQRRDLEMM---------DY---SM------SRHPEFRYKTEF 96 (515)
Q Consensus 37 ~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~--~~~~~~~~~---------~~---~~------~~~~~~~~~~~~ 96 (515)
.|+.+.|+++.-.||+|...|.|.||.+...+..+ .....++.. .. ++ .....+.....+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58999999998899999999999999987765432 000011000 00 00 000111111222
Q ss_pred ccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCC
Q 010206 97 QSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIP 176 (515)
Q Consensus 97 ~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 176 (515)
+.. .+.|++++.+ . =.++++|..+|.+.|.|++...+........+.........+. .
T Consensus 83 ~~~------------~g~vtal~~S--~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt-------~ 140 (395)
T PF08596_consen 83 DAK------------QGPVTALKNS--D-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVT-------S 140 (395)
T ss_dssp ---------------S-SEEEEEE---B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EE-------E
T ss_pred ecc------------CCcEeEEecC--C-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCee-------E
Confidence 222 3889999994 2 3489999999999999999888776644443111111112222 2
Q ss_pred ceee-----cCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEE-ecCC-----
Q 010206 177 KSYM-----ANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSIS-NNSD----- 245 (515)
Q Consensus 177 ~~~~-----~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~----- 245 (515)
+.|. .|+.. .-.++.|...|.+.+|.| +-...+.......... ..+...|..+. ++.+
T Consensus 141 ieF~vm~~~~D~yS---------Si~L~vGTn~G~v~~fkI-lp~~~g~f~v~~~~~~-~~~~~~i~~I~~i~~~~G~~a 209 (395)
T PF08596_consen 141 IEFSVMTLGGDGYS---------SICLLVGTNSGNVLTFKI-LPSSNGRFSVQFAGAT-TNHDSPILSIIPINADTGESA 209 (395)
T ss_dssp EEEEEEE-TTSSSE---------EEEEEEEETTSEEEEEEE-EE-GGG-EEEEEEEEE---SS----EEEEEETTT--B-
T ss_pred EEEEEEecCCCccc---------ceEEEEEeCCCCEEEEEE-ecCCCCceEEEEeecc-ccCCCceEEEEEEECCCCCcc
Confidence 3333 12210 012277788899998884 2222222222222221 24555555554 3221
Q ss_pred ----------------CCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEe-----cCCCcEEEEEec
Q 010206 246 ----------------GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-----PTHCNMLAYSSS 304 (515)
Q Consensus 246 ----------------~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~-----p~~~~~l~~~~~ 304 (515)
..+++.+.+..++++...+.+...+.+ ........+.+- ..+ ..|++-..
T Consensus 210 ~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~--------~~~~~~~~~~vv~~~~~~~~-~~Lv~l~~ 280 (395)
T PF08596_consen 210 LATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF--------DDPFLCSSASVVPTISRNGG-YCLVCLFN 280 (395)
T ss_dssp B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE---------SS-EEEEEEEEEEEE-EEEE-EEEEEEET
T ss_pred cCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceee--------ccccccceEEEEeecccCCc-eEEEEEEC
Confidence 124555578889999887666543321 111122233342 244 68888899
Q ss_pred CCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEee
Q 010206 305 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN 371 (515)
Q Consensus 305 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~ 371 (515)
+|.|++|.+...+.+.. ...+. ......+....++++|..++-.+...+.++.+-
T Consensus 281 ~G~i~i~SLP~Lkei~~----~~l~~--------~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv~ 335 (395)
T PF08596_consen 281 NGSIRIYSLPSLKEIKS----VSLPP--------PLDSRRLSSSSISRNGDIFYWTGPSEIQLFSVW 335 (395)
T ss_dssp TSEEEEEETTT--EEEE----EE-SS-----------HHHHTT-EE-TTS-EEEE-SSSEEEEEEEE
T ss_pred CCcEEEEECCCchHhhc----ccCCC--------ccccccccccEECCCCCEEEEeCcccEEEEEEE
Confidence 99999999987654321 11111 011134556778899998776554455544443
No 316
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.27 E-value=0.00082 Score=63.93 Aligned_cols=258 Identities=10% Similarity=0.074 Sum_probs=127.4
Q ss_pred CcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcc
Q 010206 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (515)
Q Consensus 126 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 205 (515)
+..++.++.++.+..+|.++++.......... +.. +... .++. + +.+..++
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~---------~~s------sP~v-~~~~-v------------~v~~~~g 170 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGE---------ALS------RPVV-SDGL-V------------LVHTSNG 170 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCc---------eec------CCEE-ECCE-E------------EEECCCC
Confidence 34778888899999999999987766554311 100 1111 1222 2 4455566
Q ss_pred cEEeeeeeecccccccccceeeeeec--------cCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccC
Q 010206 206 SLRLPVVVVTSQETNLVAGCRRIYAH--------AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 276 (515)
Q Consensus 206 ~i~i~d~~~~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~ 276 (515)
.+..+| ..+.+. ...+.. +...++ .. ++ .++.+ .++.+..+|..+++...+.....+
T Consensus 171 ~l~ald--~~tG~~------~W~~~~~~~~~~~~~~~sP~----v~-~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~ 236 (394)
T PRK11138 171 MLQALN--ESDGAV------KWTVNLDVPSLTLRGESAPA----TA-FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQP 236 (394)
T ss_pred EEEEEE--ccCCCE------eeeecCCCCcccccCCCCCE----EE-CC-EEEEEcCCCEEEEEEccCChhhheeccccC
Confidence 666666 222211 111100 001111 11 23 34444 788898889887765432110000
Q ss_pred ccccccCCceEEEEEec--CCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCC
Q 010206 277 ANMEDLTEVITSAEFHP--THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 354 (515)
Q Consensus 277 ~~~~~~~~~i~~i~~~p--~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 354 (515)
.. .........+..+| .+ ..++.++.+|.+..+|..+++...+.. + .....+.. .+
T Consensus 237 ~~-~~~~~~~~~~~~sP~v~~-~~vy~~~~~g~l~ald~~tG~~~W~~~--~----------------~~~~~~~~--~~ 294 (394)
T PRK11138 237 TG-ATEIDRLVDVDTTPVVVG-GVVYALAYNGNLVALDLRSGQIVWKRE--Y----------------GSVNDFAV--DG 294 (394)
T ss_pred CC-ccchhcccccCCCcEEEC-CEEEEEEcCCeEEEEECCCCCEEEeec--C----------------CCccCcEE--EC
Confidence 00 00000001111111 13 356667789999999999987543210 0 01111222 34
Q ss_pred CEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCc
Q 010206 355 RHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 433 (515)
Q Consensus 355 ~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~ 433 (515)
..++.++ ++.+..+|..+ ++.+-......... ..+... .+.+|+.++.||.|+..|..+++
T Consensus 295 ~~vy~~~~~g~l~ald~~t-G~~~W~~~~~~~~~--------------~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~- 356 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRG-GVELWSQSDLLHRL--------------LTAPVL--YNGYLVVGDSEGYLHWINREDGR- 356 (394)
T ss_pred CEEEEEcCCCeEEEEECCC-CcEEEcccccCCCc--------------ccCCEE--ECCEEEEEeCCCEEEEEECCCCC-
Confidence 4555544 58999999876 54322211100000 001222 24567888999999999999884
Q ss_pred ceeeeccCCCcee-eEEECCCCCeeEeecCCCeEEE
Q 010206 434 ESTTLEASKNPMR-RQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 434 ~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.+...+.....+. ...+ .+..|..++.||.+..
T Consensus 357 ~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~ 390 (394)
T PRK11138 357 FVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYA 390 (394)
T ss_pred EEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEE
Confidence 4333333222221 1122 2346677777877665
No 317
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.24 E-value=0.00035 Score=65.56 Aligned_cols=76 Identities=14% Similarity=0.225 Sum_probs=62.4
Q ss_pred ccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010206 231 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 309 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~ 309 (515)
-.....|.+.+++|+.+.|+.| .||+|.+||...+... +....-.++.++|+|+| .++++|+..|.+.
T Consensus 256 ipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~----------~~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ 324 (545)
T PF11768_consen 256 IPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL----------LAKAEFIPTLIAWHPDG-AIFVVGSEQGELQ 324 (545)
T ss_pred EecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee----------eeeecccceEEEEcCCC-cEEEEEcCCceEE
Confidence 3566789999999999999998 9999999998755322 12234557899999999 8999999999999
Q ss_pred EEecCccc
Q 010206 310 LIDMRQSA 317 (515)
Q Consensus 310 ~wd~~~~~ 317 (515)
+||+.-..
T Consensus 325 ~FD~ALsp 332 (545)
T PF11768_consen 325 CFDMALSP 332 (545)
T ss_pred EEEeecCc
Confidence 99987654
No 318
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.20 E-value=2.3e-06 Score=79.79 Aligned_cols=211 Identities=15% Similarity=0.211 Sum_probs=124.0
Q ss_pred cccceEEEEECCC--CCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 34 EVDIISAIEFDKS--GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 34 h~~~v~~v~~s~~--g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
....+.|+++.-+ ..++++|..+|.|.+-.+...... -.....+|.
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS---------------------s~E~tp~~a----------- 102 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS---------------------SAEVTPGYA----------- 102 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc---------------------cceeccccc-----------
Confidence 3456788887664 458999999999988876533210 001112233
Q ss_pred cceeEEEEEeecCCCcEEEee----eCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccc
Q 010206 112 EEKINKIRWCQSANSALYLLS----TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~ 187 (515)
...++++|++- |.+.|++| -.|..+.|||+.++-...... ..
T Consensus 103 -r~Ct~lAwneL-Dtn~LAagldkhrnds~~~Iwdi~s~ltvPke~-----------------------~~--------- 148 (783)
T KOG1008|consen 103 -RPCTSLAWNEL-DTNHLAAGLDKHRNDSSLKIWDINSLLTVPKES-----------------------PL--------- 148 (783)
T ss_pred -ccccccccccc-cHHHHHhhhhhhcccCCccceecccccCCCccc-----------------------cc---------
Confidence 67899999753 44567776 346789999988753211000 00
Q ss_pred cccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCC
Q 010206 188 RNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 266 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~ 266 (515)
+++ +......+++|..+.+++.+| ....+.++|++...
T Consensus 149 -----------fs~------------------------------~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~ 187 (783)
T KOG1008|consen 149 -----------FSS------------------------------STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL 187 (783)
T ss_pred -----------ccc------------------------------ccccCccccccccCcchhhcccccchhhhhhhhhhh
Confidence 100 011233478888889999999 78899999998432
Q ss_pred cccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEe-cCcccccccccceeeeccCCCccccccccccce
Q 010206 267 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID-MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 345 (515)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 345 (515)
.... .-.+..+..+...|-.+.++++- .||.|.+|| .++-+.. .......+.+.+ ..+
T Consensus 188 ~~~~---------svnTk~vqG~tVdp~~~nY~cs~-~dg~iAiwD~~rnienp---l~~i~~~~N~~~--------~~l 246 (783)
T KOG1008|consen 188 DSVS---------SVNTKYVQGITVDPFSPNYFCSN-SDGDIAIWDTYRNIENP---LQIILRNENKKP--------KQL 246 (783)
T ss_pred hhhh---------hhhhhhcccceecCCCCCceecc-ccCceeeccchhhhccH---HHHHhhCCCCcc--------cce
Confidence 2211 11233466777888433676654 499999999 3332211 111111111101 248
Q ss_pred eEEEEccCCC-EEEEE-cC-CeEEEEEeeC
Q 010206 346 SDIKFARNGR-HILSR-DY-MTLKLWDINM 372 (515)
Q Consensus 346 ~~~~~s~~~~-~l~s~-~~-~~i~iwd~~~ 372 (515)
..++|+|... .+++. -+ ++|+++|+..
T Consensus 247 ~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 247 FALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred eeEEeccCCcchhhhhccCcceEEEecccc
Confidence 8899999433 33333 34 9999999864
No 319
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.17 E-value=7.2e-07 Score=83.08 Aligned_cols=194 Identities=13% Similarity=0.127 Sum_probs=126.1
Q ss_pred CCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC-CCCEEEEe-C----CCcEEEEeCCCCCc-c
Q 010206 196 DSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-D----DLRINLWNLEISNQ-S 268 (515)
Q Consensus 196 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~-~----d~~i~iwd~~~~~~-~ 268 (515)
.+++.|..+|.|-+-. +...... ...+..++....++++|++ |...||+| + |..+.|||+.+.-. +
T Consensus 71 cIlavG~atG~I~l~s--~r~~hdS-----s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvP 143 (783)
T KOG1008|consen 71 CILAVGSATGNISLLS--VRHPHDS-----SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVP 143 (783)
T ss_pred hhhhhccccCceEEee--cCCcccc-----cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCC
Confidence 3458888889998766 3322221 2334577888999999988 67788887 3 78899999986522 1
Q ss_pred cceecccCccccc-cCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE
Q 010206 269 FNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 347 (515)
Q Consensus 269 ~~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (515)
.+. ..+.+ ......+++|..+. +++.+|...+.+.++|+|....... .+ .+..+..
T Consensus 144 ke~-----~~fs~~~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~~~~---sv--------------nTk~vqG 200 (783)
T KOG1008|consen 144 KES-----PLFSSSTLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLDSVS---SV--------------NTKYVQG 200 (783)
T ss_pred ccc-----cccccccccCccccccccCc-chhhcccccchhhhhhhhhhhhhhh---hh--------------hhhhccc
Confidence 111 12222 33445688999776 8999999999999999985432111 00 1134677
Q ss_pred EEEcc-CCCEEEEEcCCeEEEEE-eeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCC-EEEEec-CCCcE
Q 010206 348 IKFAR-NGRHILSRDYMTLKLWD-INMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGS-YSNLF 423 (515)
Q Consensus 348 ~~~s~-~~~~l~s~~~~~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~s-~dg~i 423 (515)
+.++| .+.++++-.+|.|.+|| .++-..++..+.......+ ..++.++|.|... .+++.+ +.++|
T Consensus 201 ~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~-----------~~l~~~aycPtrtglla~l~RdS~tI 269 (783)
T KOG1008|consen 201 ITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKP-----------KQLFALAYCPTRTGLLAVLSRDSITI 269 (783)
T ss_pred ceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcc-----------cceeeEEeccCCcchhhhhccCcceE
Confidence 88888 78899998899999999 4433444444332222111 1245899999643 345554 55789
Q ss_pred EEEecCC
Q 010206 424 RVFGCSE 430 (515)
Q Consensus 424 ~iw~~~~ 430 (515)
+++++..
T Consensus 270 rlydi~~ 276 (783)
T KOG1008|consen 270 RLYDICV 276 (783)
T ss_pred EEecccc
Confidence 9999864
No 320
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=0.00016 Score=69.85 Aligned_cols=179 Identities=16% Similarity=0.141 Sum_probs=114.2
Q ss_pred CCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecc
Q 010206 196 DSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 274 (515)
Q Consensus 196 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~ 274 (515)
.+++.|+..|.+.+.+ .++.. .. ...|... ..+|.++++| .||+|.|-.+-+.+....
T Consensus 50 ~~~~~GtH~g~v~~~~-----~~~~~----~~--~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~---- 108 (846)
T KOG2066|consen 50 KFFALGTHRGAVYLTT-----CQGNP----KT--NFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ---- 108 (846)
T ss_pred ceeeeccccceEEEEe-----cCCcc----cc--ccccccc------ccCCceEEEecCCCcEEEeeccCCcccee----
Confidence 4458888999999877 11110 00 1122222 5689999999 899999998877665432
Q ss_pred cCccccccCCceEEEEEecC----CCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEE
Q 010206 275 KPANMEDLTEVITSAEFHPT----HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 350 (515)
Q Consensus 275 ~~~~~~~~~~~i~~i~~~p~----~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (515)
....-++.+++++|+ ..+.+++|+..| +.++.-+-...... . .+....++|.++.|
T Consensus 109 -----~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~----v----------~l~~~eG~I~~i~W 168 (846)
T KOG2066|consen 109 -----YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDS----V----------VLSEGEGPIHSIKW 168 (846)
T ss_pred -----EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccc----e----------eeecCccceEEEEe
Confidence 224677899999997 236899999988 77776433221100 0 13334489999999
Q ss_pred ccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecC
Q 010206 351 ARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 351 s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~ 429 (515)
. |.++|=++|--|++||+.. ++.+..+......++ .+.+. ..+.|.++.++++ |-. .+|+|..++
T Consensus 169 ~--g~lIAWand~Gv~vyd~~~-~~~l~~i~~p~~~~R--~e~fp-------phl~W~~~~~LVI-GW~-d~v~i~~I~ 233 (846)
T KOG2066|consen 169 R--GNLIAWANDDGVKVYDTPT-RQRLTNIPPPSQSVR--PELFP-------PHLHWQDEDRLVI-GWG-DSVKICSIK 233 (846)
T ss_pred c--CcEEEEecCCCcEEEeccc-cceeeccCCCCCCCC--cccCC-------CceEecCCCeEEE-ecC-CeEEEEEEe
Confidence 7 7899989886799999986 555555443332111 11111 1688987766444 433 478888887
No 321
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.16 E-value=0.0023 Score=59.75 Aligned_cols=222 Identities=7% Similarity=0.042 Sum_probs=102.4
Q ss_pred EEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCc
Q 010206 238 NSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 315 (515)
Q Consensus 238 ~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~ 315 (515)
..+-|+||++.|+.. ++..|..+.+....... .....+..+.+-.-| .-. ..-.+.++|+.+
T Consensus 104 ~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~-----------~~yp~~~~~~YPk~G-~~n----p~v~l~v~~~~~ 167 (353)
T PF00930_consen 104 SAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPD-----------SQYPEVESIRYPKAG-DPN----PRVSLFVVDLAS 167 (353)
T ss_dssp BSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSST-----------ESS-EEEEEE--BTT-S-------EEEEEEEESSS
T ss_pred cceEECCCCCEEEEEEECCcCCceEEeeccCCcc-----------ccCCcccccccCCCC-CcC----CceEEEEEECCC
Confidence 468899999999986 67777766553221100 001123444442222 111 112456678877
Q ss_pred ccccccccceeeeccCCCccccccccccceeEEEEccCCC-EEEE-EcC----CeEEEEEeeCCCCCeeeEeeec-cccc
Q 010206 316 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HILS-RDY----MTLKLWDINMDSGPVATFQVHE-HLRP 388 (515)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s-~~~----~~i~iwd~~~~~~~~~~~~~~~-~~~~ 388 (515)
++... +.... .+..-...+..+.|.++++ +++. .+. ..+.++|..+ +.......... ....
T Consensus 168 ~~~~~-----~~~~~------~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~t-g~~~~~~~e~~~~Wv~ 235 (353)
T PF00930_consen 168 GKTTE-----LDPPN------SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDAST-GETRVVLEETSDGWVD 235 (353)
T ss_dssp TCCCE-----E---H------HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECT-TTCEEEEEEESSSSSS
T ss_pred CcEEE-----eeecc------ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCC-CceeEEEEecCCccee
Confidence 65321 11000 0011125688999999998 4443 221 4566677765 33332232221 1111
Q ss_pred cccccccCCCccceeeEEEc-CCCC-EEEEecCCCcEEEEecCCCCcceeeeccCCCceee-EEECCCCCee-EeecCCC
Q 010206 389 KLCDLYENDSIFDKFECCLS-GDGG-RVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRR-QVQTPSRPSR-PLGSLSG 464 (515)
Q Consensus 389 ~~~~~~~~~~~~~v~~~~~s-~~~~-~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l-~s~~~d~ 464 (515)
. -....|. +++. +|.....||.-+||-+...+.....+....-.|.. +.+.++++.+ .++..+.
T Consensus 236 ----~--------~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~ 303 (353)
T PF00930_consen 236 ----V--------YDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDN 303 (353)
T ss_dssp ----S--------SSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGG
T ss_pred ----e--------ecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCC
Confidence 0 0144554 5555 44455577765555444333333444444455544 5667766543 4444432
Q ss_pred ----eEEE--ec-CCCCCccccCCccccccCCe-eEEEEcCCCCEEEEEc
Q 010206 465 ----VVRR--VK-GADNSALDANGNAFDFSMKL-LHLAWHPSENSIACAA 506 (515)
Q Consensus 465 ----~v~l--~~-~~~~~~~~~~~~~~~~~~~i-~~~~~s~~~~~la~~~ 506 (515)
.+.. ++ +..+. .+...... ..++|||++++++...
T Consensus 304 p~~r~lY~v~~~~~~~~~-------~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 304 PGERHLYRVSLDSGGEPK-------CLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TTSBEEEEEETTETTEEE-------ESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred CCceEEEEEEeCCCCCeE-------eccCCCCCceEEEECCCCCEEEEEE
Confidence 3333 22 12111 11122222 6999999999998543
No 322
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.10 E-value=0.00016 Score=68.04 Aligned_cols=185 Identities=16% Similarity=0.169 Sum_probs=108.0
Q ss_pred cCCeEEEEecCCCCEEEEe--C--C-CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCe-
Q 010206 234 DYHINSISNNSDGETFISA--D--D-LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS- 307 (515)
Q Consensus 234 ~~~v~~~~~~~~~~~l~s~--~--d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~- 307 (515)
...+..-.|+|+++.++.. . . ..+.++|+++++....+ .+. +.-...+|+|||.+++++...||.
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~------~~~---g~~~~P~fspDG~~l~f~~~rdg~~ 262 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL------NFN---GNNGAPAFSPDGSKLAFSSSRDGSP 262 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee------ccC---CccCCccCCCCCCEEEEEECCCCCc
Confidence 3456677899999987764 2 3 35999999877654321 222 233456799999666667777776
Q ss_pred -EEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--CeEEEEEeeCCCCCeeeEeeec
Q 010206 308 -IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHE 384 (515)
Q Consensus 308 -i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~~~~~~~~~~~~~ 384 (515)
|.++|+..+.... +.. -.+.-..-.|+|||+.++-.+| |.-.||-+..++.....+....
T Consensus 263 ~iy~~dl~~~~~~~-----Lt~------------~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~ 325 (425)
T COG0823 263 DIYLMDLDGKNLPR-----LTN------------GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSG 325 (425)
T ss_pred cEEEEcCCCCccee-----ccc------------CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccC
Confidence 5555666654211 111 0112235578999999998765 6666665554455445544333
Q ss_pred cccccccccccCCCccceeeEEEcCCCCEEEEecC-CCc--EEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeec
Q 010206 385 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNL--FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGS 461 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~-dg~--i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 461 (515)
.... .-.|+|||++|+..+. +|. |.+.++.++.. ...+ .+........+.++++.+...+
T Consensus 326 ~~~~---------------~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~l-t~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 326 GGNS---------------NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRIL-TSTYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred CCCc---------------CccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEc-cccccCCCCCcCCCCceEEEec
Confidence 2211 4679999999886653 344 66677766642 1111 1112222345566666554443
No 323
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=0.0009 Score=59.48 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=28.8
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCe
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK 147 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 147 (515)
..|..++|+|...| ++..++.+.+|++.|+++..
T Consensus 194 ~~IrdlafSp~~~G-Ll~~asl~nkiki~dlet~~ 227 (463)
T KOG1645|consen 194 SFIRDLAFSPFNEG-LLGLASLGNKIKIMDLETSC 227 (463)
T ss_pred hhhhhhccCccccc-eeeeeccCceEEEEecccce
Confidence 67999999887654 78888999999999998764
No 324
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.00087 Score=65.51 Aligned_cols=203 Identities=9% Similarity=0.066 Sum_probs=113.9
Q ss_pred CCCCCcccEEeeeeeecccccccccceeeeeeccCcCC-eEEEEecCCCCEEEE-e-CCC----cEEEEeCCCCCccc--
Q 010206 199 FPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYH-INSISNNSDGETFIS-A-DDL----RINLWNLEISNQSF-- 269 (515)
Q Consensus 199 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~s-~-~d~----~i~iwd~~~~~~~~-- 269 (515)
+.|+.+|.|.+.+ ... +..+. ...+... |..+....+..+|++ | +++ .+++|+++..+...
T Consensus 39 vigt~~G~V~~Ln-----~s~----~~~~~-fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 39 VIGTADGRVVILN-----SSF----QLIRG-FQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEeeccccEEEec-----ccc----eeeeh-heecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 8889999888776 110 01011 2344444 444443344456666 4 444 69999997542111
Q ss_pred ce---ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccccee
Q 010206 270 NI---VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 346 (515)
Q Consensus 270 ~~---~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 346 (515)
.. ..+-+........++.+++.+.+- ..+|+|-.+|.|..+.=.-.. .+..+.- .......+|+
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~R--Drgsr~~----------~~~~~~~pIT 175 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILR--DRGSRQD----------YSHRGKEPIT 175 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchh--cccccee----------eeccCCCCce
Confidence 10 011111222245678899999987 899999999999887422111 0000100 0111236899
Q ss_pred EEEEccCCCE-EEEEcCCeEEEEEeeCCCCCe-eeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEE
Q 010206 347 DIKFARNGRH-ILSRDYMTLKLWDINMDSGPV-ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 424 (515)
Q Consensus 347 ~~~~s~~~~~-l~s~~~~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~ 424 (515)
.+++..+++. +++++-..|.+|.+.. ..+. ..+..++.. ..+..+++....++.++. ..+.
T Consensus 176 gL~~~~d~~s~lFv~Tt~~V~~y~l~g-r~p~~~~ld~~G~~---------------lnCss~~~~t~qfIca~~-e~l~ 238 (933)
T KOG2114|consen 176 GLALRSDGKSVLFVATTEQVMLYSLSG-RTPSLKVLDNNGIS---------------LNCSSFSDGTYQFICAGS-EFLY 238 (933)
T ss_pred eeEEecCCceeEEEEecceeEEEEecC-CCcceeeeccCCcc---------------ceeeecCCCCccEEEecC-ceEE
Confidence 9999988887 4555556899999983 3333 334444433 236677765543444433 4799
Q ss_pred EEecCCCCcceeeec-cCC
Q 010206 425 VFGCSEGSAESTTLE-ASK 442 (515)
Q Consensus 425 iw~~~~~~~~~~~~~-~~~ 442 (515)
+|+.... .....+. +|.
T Consensus 239 fY~sd~~-~~cfaf~~g~k 256 (933)
T KOG2114|consen 239 FYDSDGR-GPCFAFEVGEK 256 (933)
T ss_pred EEcCCCc-ceeeeecCCCe
Confidence 9998744 3333444 443
No 325
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.04 E-value=0.0016 Score=62.02 Aligned_cols=137 Identities=9% Similarity=-0.004 Sum_probs=76.8
Q ss_pred CCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccc
Q 010206 245 DGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK 324 (515)
Q Consensus 245 ~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 324 (515)
++..++++.++.+..+|+.+++...+. .+ .....+.. .+ ..++.++.+|.+..+|..+++...+...
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~------~~----~~~~~~~~--~~-~~vy~~~~~g~l~ald~~tG~~~W~~~~ 322 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKR------EY----GSVNDFAV--DG-GRIYLVDQNDRVYALDTRGGVELWSQSD 322 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEee------cC----CCccCcEE--EC-CEEEEEcCCCeEEEEECCCCcEEEcccc
Confidence 344444447899999999887654321 11 11112222 23 4677788899999999998875432110
Q ss_pred eeeeccCCCccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCcccee
Q 010206 325 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF 403 (515)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 403 (515)
... ....+..+. +..|+.++ +|.|.+.|..+ ++.+........... .
T Consensus 323 -~~~--------------~~~~sp~v~--~g~l~v~~~~G~l~~ld~~t-G~~~~~~~~~~~~~~--------------s 370 (394)
T PRK11138 323 -LLH--------------RLLTAPVLY--NGYLVVGDSEGYLHWINRED-GRFVAQQKVDSSGFL--------------S 370 (394)
T ss_pred -cCC--------------CcccCCEEE--CCEEEEEeCCCEEEEEECCC-CCEEEEEEcCCCcce--------------e
Confidence 000 011111121 34555555 49999999986 776655543221100 0
Q ss_pred eEEEcCCCCEEEEecCCCcEEEEec
Q 010206 404 ECCLSGDGGRVATGSYSNLFRVFGC 428 (515)
Q Consensus 404 ~~~~s~~~~~l~s~s~dg~i~iw~~ 428 (515)
...+ .+..|+.++.||.|+.+++
T Consensus 371 ~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 371 EPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEE--ECCEEEEEeCCceEEEEeC
Confidence 1122 2446888899999988764
No 326
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.03 E-value=0.00014 Score=71.26 Aligned_cols=180 Identities=17% Similarity=0.164 Sum_probs=119.4
Q ss_pred cEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCC
Q 010206 297 NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSG 375 (515)
Q Consensus 297 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~ 375 (515)
..++.|+....+..+|+++.+.... .... .+.+.-+. .+++++.+|+. |+|.+-|.++ .+
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~----~~v~------------a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s-~~ 208 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRT----TNVS------------ASGVTIMR--YNNRNLFCGDTRGTVFLRDPNS-FE 208 (1118)
T ss_pred cceeecchhhheeeeecccceeeee----eecc------------CCceEEEE--ecCcEEEeecccceEEeecCCc-Cc
Confidence 4577788888888899988764321 1110 02244333 46889999987 9999999997 89
Q ss_pred CeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecC---------CCcEEEEecCCCCcceeeeccCCCcee
Q 010206 376 PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY---------SNLFRVFGCSEGSAESTTLEASKNPMR 446 (515)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~---------dg~i~iw~~~~~~~~~~~~~~~~~~v~ 446 (515)
.+.++..|.+. -.+|+-.|+.|++++. |.-|+|||++.-..+ ..+..+..| .
T Consensus 209 ~iht~~aHs~s-----------------iSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral-~PI~~~~~P-~ 269 (1118)
T KOG1275|consen 209 TIHTFDAHSGS-----------------ISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL-SPIQFPYGP-Q 269 (1118)
T ss_pred eeeeeeccccc-----------------eeeeeccCCeEEEeecccccccccccchhhhhhhhhhhcc-CCcccccCc-h
Confidence 99999999876 3467778999999885 456789999875332 344444444 3
Q ss_pred eEEECCCC-CeeEeecCCCeEEEecCCCCCccccCCcccc-ccCCeeEEEEcCCCCEEEEEcCCc-EEEEe
Q 010206 447 RQVQTPSR-PSRPLGSLSGVVRRVKGADNSALDANGNAFD-FSMKLLHLAWHPSENSIACAASNS-LYMYY 514 (515)
Q Consensus 447 ~~~~~~~~-~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~la~~~~~~-~~i~~ 514 (515)
-+.|.|.- ..++..+..|.+.+.+............... .+..+..+.+|+.++.||++..+| +-+|.
T Consensus 270 flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 270 FLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred hhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 44566654 3577788888888844221211111111111 234599999999999999998554 66764
No 327
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.02 E-value=0.00018 Score=69.88 Aligned_cols=106 Identities=15% Similarity=0.238 Sum_probs=79.4
Q ss_pred EEEecCCCCEEEEe-----CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEec
Q 010206 239 SISNNSDGETFISA-----DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 313 (515)
Q Consensus 239 ~~~~~~~~~~l~s~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~ 313 (515)
-.+|+|...+|+++ ..|+|.||- +++++...+ + ..-.+++++|+|.. -.|+.|-.-|.+.+|..
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V------t---~P~hatSLCWHpe~-~vLa~gwe~g~~~v~~~ 88 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV------T---YPVHATSLCWHPEE-FVLAQGWEMGVSDVQKT 88 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc------c---cceehhhhccChHH-HHHhhccccceeEEEec
Confidence 35799999999875 378999884 334432211 1 12335679999987 78889999999999987
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEee
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDIN 371 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~ 371 (515)
.+.+.- .+...|..+|..+.||++|..+++++. |.+.+|...
T Consensus 89 ~~~e~h----------------tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 89 NTTETH----------------TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CCceee----------------eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 665421 113457789999999999999999998 999999886
No 328
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.01 E-value=9.6e-05 Score=69.15 Aligned_cols=73 Identities=16% Similarity=0.199 Sum_probs=59.6
Q ss_pred ccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEE
Q 010206 281 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 360 (515)
Q Consensus 281 ~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 360 (515)
.....+.+++++|+. ..++.|+.||.|.+||...+.... ....-..+.++|+|+|..+++|
T Consensus 257 pL~s~v~~ca~sp~E-~kLvlGC~DgSiiLyD~~~~~t~~------------------~ka~~~P~~iaWHp~gai~~V~ 317 (545)
T PF11768_consen 257 PLPSQVICCARSPSE-DKLVLGCEDGSIILYDTTRGVTLL------------------AKAEFIPTLIAWHPDGAIFVVG 317 (545)
T ss_pred ecCCcceEEecCccc-ceEEEEecCCeEEEEEcCCCeeee------------------eeecccceEEEEcCCCcEEEEE
Confidence 357789999999998 899999999999999987653211 0111346889999999999999
Q ss_pred cC-CeEEEEEeeC
Q 010206 361 DY-MTLKLWDINM 372 (515)
Q Consensus 361 ~~-~~i~iwd~~~ 372 (515)
++ |.+.+||+..
T Consensus 318 s~qGelQ~FD~AL 330 (545)
T PF11768_consen 318 SEQGELQCFDMAL 330 (545)
T ss_pred cCCceEEEEEeec
Confidence 98 9999999975
No 329
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.98 E-value=0.00012 Score=71.60 Aligned_cols=184 Identities=16% Similarity=0.170 Sum_probs=122.5
Q ss_pred CcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcc
Q 010206 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (515)
Q Consensus 126 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 205 (515)
+..++-|+....+..+|+.+.+........... ......+++.+ +.|...|
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~-----------------v~imR~Nnr~l------------f~G~t~G 197 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG-----------------VTIMRYNNRNL------------FCGDTRG 197 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCc-----------------eEEEEecCcEE------------Eeecccc
Confidence 346777777778888999888766555443211 22445667777 9999999
Q ss_pred cEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--C--------CCcEEEEeCCCCCcccceeccc
Q 010206 206 SLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--D--------DLRINLWNLEISNQSFNIVDVK 275 (515)
Q Consensus 206 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~--------d~~i~iwd~~~~~~~~~~~~~~ 275 (515)
+|.+-| ..+.+ ...+ +..|.+.|.++.. .|++|+++ + |.-|++||++..+....+
T Consensus 198 ~V~LrD--~~s~~------~iht-~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI---- 262 (1118)
T KOG1275|consen 198 TVFLRD--PNSFE------TIHT-FDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI---- 262 (1118)
T ss_pred eEEeec--CCcCc------eeee-eeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCc----
Confidence 999877 33332 3333 4789998877655 67888875 3 445889999976654211
Q ss_pred CccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCC
Q 010206 276 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 355 (515)
Q Consensus 276 ~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 355 (515)
.+ +.++ .=+.|.|.-+..+++++..|...+-|..+........+.+ ....+.+..+.+|++++
T Consensus 263 --~~--~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v------------~p~~s~i~~fDiSsn~~ 325 (1118)
T KOG1275|consen 263 --QF--PYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMV------------NPNGSGISAFDISSNGD 325 (1118)
T ss_pred --cc--ccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEE------------ccCCCcceeEEecCCCc
Confidence 22 2222 4567888877889999999999998843321110001111 11124599999999999
Q ss_pred EEEEEcC-CeEEEEEe
Q 010206 356 HILSRDY-MTLKLWDI 370 (515)
Q Consensus 356 ~l~s~~~-~~i~iwd~ 370 (515)
.++.|+. |.|.+|.-
T Consensus 326 alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 326 ALAFGDHEGHVNLWAD 341 (1118)
T ss_pred eEEEecccCcEeeecC
Confidence 9999986 99999983
No 330
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.97 E-value=0.00034 Score=68.02 Aligned_cols=70 Identities=11% Similarity=0.127 Sum_probs=58.9
Q ss_pred CeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecC
Q 010206 236 HINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 314 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~ 314 (515)
.+.+++|+|..-.|+.| .-|.+.+|...+.+.- . ....|..+|..+.|+++| ..++++..-|.+.+|...
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h-t-------v~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH-T-------VVETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCceee-e-------eccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEee
Confidence 45679999999899999 8999999998755432 1 224589999999999999 899999999999999875
No 331
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.91 E-value=0.0034 Score=59.50 Aligned_cols=213 Identities=12% Similarity=0.091 Sum_probs=110.5
Q ss_pred cCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEE
Q 010206 232 AHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 311 (515)
Q Consensus 232 ~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~w 311 (515)
.....+..+.++|+++.++.++||...++.....+.. ..+.-...+|.+.+ .+|+-...+.|.++
T Consensus 30 ~~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k-------------~~G~g~~~vw~~~n--~yAv~~~~~~I~I~ 94 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNK-------------AFGSGLSFVWSSRN--RYAVLESSSTIKIY 94 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEE-------------EEEE-SEEEE-TSS--EEEEE-TTS-EEEE
T ss_pred CCCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccc-------------ccCceeEEEEecCc--cEEEEECCCeEEEE
Confidence 3445578999999999999998999989884322211 23445678899854 57777778899996
Q ss_pred -ecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccc
Q 010206 312 -DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKL 390 (515)
Q Consensus 312 -d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 390 (515)
++.... .+.+..+ ..+..+-. |.+|...+++.|.+||+.+ ++.+.++....
T Consensus 95 kn~~~~~-----~k~i~~~-------------~~~~~If~---G~LL~~~~~~~i~~yDw~~-~~~i~~i~v~~------ 146 (443)
T PF04053_consen 95 KNFKNEV-----VKSIKLP-------------FSVEKIFG---GNLLGVKSSDFICFYDWET-GKLIRRIDVSA------ 146 (443)
T ss_dssp ETTEE-T-----T-----S-------------S-EEEEE----SSSEEEEETTEEEEE-TTT---EEEEESS-E------
T ss_pred EcCcccc-----ceEEcCC-------------cccceEEc---CcEEEEECCCCEEEEEhhH-cceeeEEecCC------
Confidence 332221 0111110 11233322 8888887777899999996 77777776443
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCC---------Cc-ceeeeccCCCceeeEEECCCCCeeEee
Q 010206 391 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG---------SA-ESTTLEASKNPMRRQVQTPSRPSRPLG 460 (515)
Q Consensus 391 ~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~---------~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~ 460 (515)
|..+.|+++|++++..+.+ .+.|++.+.. -. ....+..-...|.+.+|..+ .++..
T Consensus 147 -----------vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYt 212 (443)
T PF04053_consen 147 -----------VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYT 212 (443)
T ss_dssp ------------EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE
T ss_pred -----------CcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEE
Confidence 2379999999999988765 6777665421 00 22333333566777777655 33333
Q ss_pred cCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCC
Q 010206 461 SLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASN 508 (515)
Q Consensus 461 ~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~ 508 (515)
+.. .++-+-+++.. .......++.=+...|+.+.|.+...+
T Consensus 213 T~~-~lkYl~~Ge~~------~i~~ld~~~yllgy~~~~~~ly~~Dr~ 253 (443)
T PF04053_consen 213 TSN-HLKYLVNGETG------IIAHLDKPLYLLGYLPKENRLYLIDRD 253 (443)
T ss_dssp -TT-EEEEEETTEEE------EEEE-SS--EEEEEETTTTEEEEE-TT
T ss_pred cCC-eEEEEEcCCcc------eEEEcCCceEEEEEEccCCEEEEEECC
Confidence 333 33331111111 001124556667777776776666543
No 332
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.89 E-value=0.012 Score=50.96 Aligned_cols=128 Identities=10% Similarity=0.148 Sum_probs=62.6
Q ss_pred CcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCC--CCcccceecccC-ccccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010206 233 HDYHINSISNNSDGETFISA-DDLRINLWNLEI--SNQSFNIVDVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 308 (515)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~--~~~~~~~~~~~~-~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i 308 (515)
+...+-.++|++.++.|+.+ ...-..+|.+.. ............ .........+.+++++|...++++.+..+..+
T Consensus 116 ~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l 195 (248)
T PF06977_consen 116 GNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLL 195 (248)
T ss_dssp -SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEE
T ss_pred CCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeE
Confidence 44668899999987777777 555566666553 111111110000 00112334578999999876888888889999
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEE
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLW 368 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iw 368 (515)
..+| .+|+... .+...... .-+...-...-.|+|.++|++.++..-+..++|
T Consensus 196 ~~~d-~~G~~~~----~~~L~~g~---~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 196 LELD-RQGRVVS----SLSLDRGF---HGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp EEE--TT--EEE----EEE-STTG---GG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred EEEC-CCCCEEE----EEEeCCcc---cCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 9999 4554321 11111100 000001124678999999987777654655544
No 333
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.87 E-value=9.2e-05 Score=70.41 Aligned_cols=110 Identities=12% Similarity=0.094 Sum_probs=84.4
Q ss_pred eEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCC-CccccCCc
Q 010206 404 ECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADN-SALDANGN 482 (515)
Q Consensus 404 ~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~-~~~~~~~~ 482 (515)
--+++..+++++.|+.-|.+++|+...+..+....++....+..+..+++..++|.|+..|.|.+....+- .+......
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t 117 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVT 117 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeec
Confidence 34677789999999999999999999886665666666677778889999999999999999998222221 11112222
Q ss_pred --cccccCCeeEEEEcCCCCEEEEEcCCcEEEE
Q 010206 483 --AFDFSMKLLHLAWHPSENSIACAASNSLYMY 513 (515)
Q Consensus 483 --~~~~~~~i~~~~~s~~~~~la~~~~~~~~i~ 513 (515)
...|+..|++++|++++..+.+|...|.++.
T Consensus 118 ~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~ 150 (726)
T KOG3621|consen 118 PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVL 150 (726)
T ss_pred cccccCCceEEEEEecccccEEeecCCCceEEE
Confidence 2246889999999999999999998886654
No 334
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.0006 Score=60.55 Aligned_cols=99 Identities=16% Similarity=0.254 Sum_probs=72.4
Q ss_pred cccccccceeEEEEccCCC-EEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCC-E
Q 010206 337 FFTEIIASISDIKFARNGR-HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-R 413 (515)
Q Consensus 337 ~~~~~~~~i~~~~~s~~~~-~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~ 413 (515)
++.++...|.+++|||..+ ++..++- ..|+|.|+.+ ...+..+..+.. +++++|.-|.. +
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet-~~~vssy~a~~~----------------~wSC~wDlde~h~ 250 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-SCVVSSYIAYNQ----------------IWSCCWDLDERHV 250 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEeccc-ceeeeheeccCC----------------ceeeeeccCCcce
Confidence 5677788999999999777 4555664 8999999997 666666665532 46999998765 5
Q ss_pred EEEecCCCcEEEEecCCCCcceeeecc--CCCceeeEEECC
Q 010206 414 VATGSYSNLFRVFGCSEGSAESTTLEA--SKNPMRRQVQTP 452 (515)
Q Consensus 414 l~s~s~dg~i~iw~~~~~~~~~~~~~~--~~~~v~~~~~~~ 452 (515)
|..|-..|.|.|||++..+.....+.+ ...||..++.-+
T Consensus 251 IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~ 291 (463)
T KOG1645|consen 251 IYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQ 291 (463)
T ss_pred eEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccC
Confidence 777889999999999976555555443 355666655533
No 335
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.85 E-value=0.0074 Score=56.45 Aligned_cols=209 Identities=11% Similarity=0.048 Sum_probs=103.7
Q ss_pred ccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCc-cccccCCceEEEEEec-----CC--CcEEEE
Q 010206 231 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA-NMEDLTEVITSAEFHP-----TH--CNMLAY 301 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~i~~i~~~p-----~~--~~~l~~ 301 (515)
....++|++++.+.-| +++.| .+|.+.|.|++.+...++. .+... ........++++.|.. |+ .-.+++
T Consensus 83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~-~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNE-NIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEE-EGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeec-cccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 4558999999997444 88888 8999999999866554431 11110 1112355688888862 11 137888
Q ss_pred EecCCeEEEEecCc-ccccccccceeeeccCCCccccccccccceeEEE-EccC---------------------CCEEE
Q 010206 302 SSSKGSIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK-FARN---------------------GRHIL 358 (515)
Q Consensus 302 ~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~s~~---------------------~~~l~ 358 (515)
|+..|.+.+|.+.- ..- .....+.... ..+.++|..+. |+.+ ..+++
T Consensus 161 GTn~G~v~~fkIlp~~~g--~f~v~~~~~~--------~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV 230 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNG--RFSVQFAGAT--------TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV 230 (395)
T ss_dssp EETTSEEEEEEEEE-GGG---EEEEEEEEE----------SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE
T ss_pred EeCCCCEEEEEEecCCCC--ceEEEEeecc--------ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE
Confidence 99999999998742 110 0011111110 11223333333 2110 12566
Q ss_pred EEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEE-----cCCCCEEEEecCCCcEEEEecCCCCc
Q 010206 359 SRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL-----SGDGGRVATGSYSNLFRVFGCSEGSA 433 (515)
Q Consensus 359 s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----s~~~~~l~s~s~dg~i~iw~~~~~~~ 433 (515)
..++..++++...+ .+........... ...+++ ...+..|++-..+|.+++|.+..-+.
T Consensus 231 vvSe~~irv~~~~~-~k~~~K~~~~~~~---------------~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke 294 (395)
T PF08596_consen 231 VVSESDIRVFKPPK-SKGAHKSFDDPFL---------------CSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE 294 (395)
T ss_dssp EE-SSEEEEE-TT----EEEEE-SS-EE---------------EEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E
T ss_pred EEcccceEEEeCCC-Ccccceeeccccc---------------cceEEEEeecccCCceEEEEEECCCcEEEEECCCchH
Confidence 67778999998875 4433322211111 112333 23566788888999999999997533
Q ss_pred ceeeeccC----CCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 434 ESTTLEAS----KNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 434 ~~~~~~~~----~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+ ..++.. ........++++|..+.-.+..-..++
T Consensus 295 i-~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~ 332 (395)
T PF08596_consen 295 I-KSVSLPPPLDSRRLSSSSISRNGDIFYWTGPSEIQLF 332 (395)
T ss_dssp E-EEEE-SS---HHHHTT-EE-TTS-EEEE-SSSEEEEE
T ss_pred h-hcccCCCccccccccccEECCCCCEEEEeCcccEEEE
Confidence 3 333322 233456677888887766655544443
No 336
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.84 E-value=0.0032 Score=55.23 Aligned_cols=149 Identities=12% Similarity=0.104 Sum_probs=82.5
Q ss_pred CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCC
Q 010206 253 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 332 (515)
Q Consensus 253 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 332 (515)
++++|..||.++++...+. .+..-.....+..+.. + ..+++++.++.+..||..+|+...+ ++...
T Consensus 1 ~~g~l~~~d~~tG~~~W~~------~~~~~~~~~~~~~~~~-~-~~v~~~~~~~~l~~~d~~tG~~~W~----~~~~~-- 66 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSY------DLGPGIGGPVATAVPD-G-GRVYVASGDGNLYALDAKTGKVLWR----FDLPG-- 66 (238)
T ss_dssp -TSEEEEEETTTTEEEEEE------ECSSSCSSEEETEEEE-T-TEEEEEETTSEEEEEETTTSEEEEE----EECSS--
T ss_pred CCCEEEEEECCCCCEEEEE------ECCCCCCCccceEEEe-C-CEEEEEcCCCEEEEEECCCCCEEEE----eeccc--
Confidence 4688999999887765542 1111112222223323 3 4677778999999999999986433 11110
Q ss_pred CccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeE-eeeccccccccccccCCCccceeeEEEcCCC
Q 010206 333 GTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATF-QVHEHLRPKLCDLYENDSIFDKFECCLSGDG 411 (515)
Q Consensus 333 ~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 411 (515)
.+.......++..++...++.|..+|..+ ++.+-.. ........ . ........++
T Consensus 67 -----------~~~~~~~~~~~~v~v~~~~~~l~~~d~~t-G~~~W~~~~~~~~~~~----------~--~~~~~~~~~~ 122 (238)
T PF13360_consen 67 -----------PISGAPVVDGGRVYVGTSDGSLYALDAKT-GKVLWSIYLTSSPPAG----------V--RSSSSPAVDG 122 (238)
T ss_dssp -----------CGGSGEEEETTEEEEEETTSEEEEEETTT-SCEEEEEEE-SSCTCS----------T--B--SEEEEET
T ss_pred -----------cccceeeecccccccccceeeeEecccCC-cceeeeeccccccccc----------c--ccccCceEec
Confidence 11111122244444444558999999876 7766553 32211100 0 0022233347
Q ss_pred CEEEEecCCCcEEEEecCCCCcceeeecc
Q 010206 412 GRVATGSYSNLFRVFGCSEGSAESTTLEA 440 (515)
Q Consensus 412 ~~l~s~s~dg~i~iw~~~~~~~~~~~~~~ 440 (515)
..++.+..++.|..+|+++|+ ++.....
T Consensus 123 ~~~~~~~~~g~l~~~d~~tG~-~~w~~~~ 150 (238)
T PF13360_consen 123 DRLYVGTSSGKLVALDPKTGK-LLWKYPV 150 (238)
T ss_dssp TEEEEEETCSEEEEEETTTTE-EEEEEES
T ss_pred CEEEEEeccCcEEEEecCCCc-EEEEeec
Confidence 788888889999999999984 4444433
No 337
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.84 E-value=0.0063 Score=56.69 Aligned_cols=93 Identities=13% Similarity=0.012 Sum_probs=53.4
Q ss_pred cccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccc--eeeEEEcC-CCCE-
Q 010206 339 TEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD--KFECCLSG-DGGR- 413 (515)
Q Consensus 339 ~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~s~-~~~~- 413 (515)
......+.+++.+|++++.++.+. |+|.++|+.+ +..++.+++-....-..........-.. .....-.+ ...+
T Consensus 304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCC-ChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 334456889999999998888766 9999999986 7777777765543110000000000000 00000000 0112
Q ss_pred EEEecCCCcEEEEecCCCC
Q 010206 414 VATGSYSNLFRVFGCSEGS 432 (515)
Q Consensus 414 l~s~s~dg~i~iw~~~~~~ 432 (515)
++-+-.-|.|.||.++++.
T Consensus 383 vIyaprRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGP 401 (415)
T ss_pred EEEeccCCeEEEEecCCCC
Confidence 3456678999999999873
No 338
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.82 E-value=0.0012 Score=62.37 Aligned_cols=185 Identities=15% Similarity=0.133 Sum_probs=101.7
Q ss_pred CCceEEEEEecCCCcEEEEE-ecC---CeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEE
Q 010206 283 TEVITSAEFHPTHCNMLAYS-SSK---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL 358 (515)
Q Consensus 283 ~~~i~~i~~~p~~~~~l~~~-~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 358 (515)
...+..-+|+|++ ..++.- -.. ..+.++|+.+++... +..+. +.-..-+|+|||+.|+
T Consensus 192 ~~~~~~p~ws~~~-~~~~y~~f~~~~~~~i~~~~l~~g~~~~--i~~~~---------------g~~~~P~fspDG~~l~ 253 (425)
T COG0823 192 GSLILTPAWSPDG-KKLAYVSFELGGCPRIYYLDLNTGKRPV--ILNFN---------------GNNGAPAFSPDGSKLA 253 (425)
T ss_pred CcceeccccCcCC-CceEEEEEecCCCceEEEEeccCCccce--eeccC---------------CccCCccCCCCCCEEE
Confidence 4456677899998 444433 222 358889998875321 11111 2334568999999988
Q ss_pred EEc--C--CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEec-CCCc--EEEEecCCC
Q 010206 359 SRD--Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNL--FRVFGCSEG 431 (515)
Q Consensus 359 s~~--~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s-~dg~--i~iw~~~~~ 431 (515)
-.. + -.|.++|+.. +.+..+....+.. ..-.|+|||++|+-.+ ..|. |.+++++.+
T Consensus 254 f~~~rdg~~~iy~~dl~~--~~~~~Lt~~~gi~---------------~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~ 316 (425)
T COG0823 254 FSSSRDGSPDIYLMDLDG--KNLPRLTNGFGIN---------------TSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS 316 (425)
T ss_pred EEECCCCCccEEEEcCCC--CcceecccCCccc---------------cCccCCCCCCEEEEEeCCCCCcceEEECCCCC
Confidence 643 2 4566667764 3333333222110 1467999999988555 4554 555566654
Q ss_pred CcceeeeccCCCceeeEEECCCCCeeEeecCC-CeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEc
Q 010206 432 SAESTTLEASKNPMRRQVQTPSRPSRPLGSLS-GVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 506 (515)
Q Consensus 432 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~ 506 (515)
.....+....... .-.++|+|++++..+.. |...+. ...+..... ...+.........+|.|++..+...+
T Consensus 317 ~~~riT~~~~~~~--~p~~SpdG~~i~~~~~~~g~~~i~-~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 317 QVTRLTFSGGGNS--NPVWSPDGDKIVFESSSGGQWDID-KNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred ceeEeeccCCCCc--CccCCCCCCEEEEEeccCCceeeE-EeccCCCCc-EEEccccccCCCCCcCCCCceEEEec
Confidence 3333344333332 77889999998887753 332220 011100000 11122334456777888888777544
No 339
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.74 E-value=0.064 Score=54.11 Aligned_cols=226 Identities=12% Similarity=0.098 Sum_probs=127.1
Q ss_pred CCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC--------------CeEEEE
Q 010206 246 GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--------------GSIRLI 311 (515)
Q Consensus 246 ~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d--------------g~i~~w 311 (515)
...|+++..+.+++.-++.-++... ++.. -....+.+++.+.. ..+++.+.. ..++++
T Consensus 684 ~d~l~~~~~~~l~i~tid~iqkl~i------rtvp-l~~~prrI~~q~~s-l~~~v~s~r~e~~~~~~~ee~~~s~l~vl 755 (1096)
T KOG1897|consen 684 PDSLASANGGALTIGTIDEIQKLHI------RTVP-LGESPRRICYQESS-LTFGVLSNRIESSAEYYGEEYEVSFLRVL 755 (1096)
T ss_pred CceEEEecCCceEEEEecchhhcce------eeec-CCCChhheEecccc-eEEEEEecccccchhhcCCcceEEEEEEe
Confidence 4567777778888887764433221 1211 23445677777743 444444332 135556
Q ss_pred ecCcccccccccceeeeccCCCccccccccccceeEEEEccC-CCEEEEEc----------C-CeEEEEEeeCCCCCeee
Q 010206 312 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-GRHILSRD----------Y-MTLKLWDINMDSGPVAT 379 (515)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~s~~----------~-~~i~iwd~~~~~~~~~~ 379 (515)
|-.+.+.... ..++..+ ..-.|.++.|..| +.++++|. . |+|.+|.+.. .+.++.
T Consensus 756 D~nTf~vl~~--hef~~~E----------~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e-~~~L~~ 822 (1096)
T KOG1897|consen 756 DQNTFEVLSS--HEFERNE----------TALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE-LNSLEL 822 (1096)
T ss_pred cCCceeEEee--ccccccc----------eeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec-CCceee
Confidence 6555432211 1111100 0134666678876 67777653 2 7888888874 444444
Q ss_pred EeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEe
Q 010206 380 FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPL 459 (515)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 459 (515)
...+.-... +.++.. -+|++||. -...|++|+..++ .++..-..+..++..+...-.+..++.
T Consensus 823 v~e~~v~Ga-------------v~aL~~-fngkllA~--In~~vrLye~t~~-~eLr~e~~~~~~~~aL~l~v~gdeI~V 885 (1096)
T KOG1897|consen 823 VAETVVKGA-------------VYALVE-FNGKLLAG--INQSVRLYEWTTE-RELRIECNISNPIIALDLQVKGDEIAV 885 (1096)
T ss_pred eeeeeeccc-------------eeehhh-hCCeEEEe--cCcEEEEEEcccc-ceehhhhcccCCeEEEEEEecCcEEEE
Confidence 433321100 112221 16777764 4468999999876 344555677888999999999999999
Q ss_pred ecCCCeEEE--ecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcEE
Q 010206 460 GSLSGVVRR--VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLY 511 (515)
Q Consensus 460 ~~~d~~v~l--~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~ 511 (515)
|..-+.+.+ +++.+-. -.....--+...++++.+-.+..++.+-...+++
T Consensus 886 gDlm~Sitll~y~~~eg~--f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf 937 (1096)
T KOG1897|consen 886 GDLMRSITLLQYKGDEGN--FEEVARDYNPNWMTAVEILDDDTYLGAENSGNLF 937 (1096)
T ss_pred eeccceEEEEEEeccCCc--eEEeehhhCccceeeEEEecCceEEeecccccEE
Confidence 999898888 2222210 0011111235677888887777776655444444
No 340
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.69 E-value=0.0072 Score=60.79 Aligned_cols=144 Identities=15% Similarity=0.163 Sum_probs=87.8
Q ss_pred cEEEEE-ecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEcc------CCCEEEEEcCCeEEEEE
Q 010206 297 NMLAYS-SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR------NGRHILSRDYMTLKLWD 369 (515)
Q Consensus 297 ~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~------~~~~l~s~~~~~i~iwd 369 (515)
++|+.. .....++-.|+..|+.+. .|..+.. .+|..++-.. ..+.++.-+++.+..||
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~----eW~~~~~-----------~~v~~~~p~~K~aqlt~e~tflGls~n~lfriD 558 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVE----EWKVHDD-----------IPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRID 558 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEE----EeecCCC-----------cceeEecccccccccCCCceEEEECCCceEEec
Confidence 444433 346788889999998753 3443321 1243332211 22344444668999999
Q ss_pred eeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEE
Q 010206 370 INMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQV 449 (515)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~ 449 (515)
.+..+..+..-..+. |..+.- ..+++-+.+| +||.|+.+|.||+||- .+..-...+.+-..||..+.
T Consensus 559 pR~~~~k~v~~~~k~---------Y~~~~~--Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iD 625 (794)
T PF08553_consen 559 PRLSGNKLVDSQSKQ---------YSSKNN--FSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGID 625 (794)
T ss_pred cCCCCCceeeccccc---------cccCCC--ceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEE
Confidence 986432221111111 111111 2356655554 6889999999999994 34333356778889999999
Q ss_pred ECCCCCeeEeecCCCeEEE
Q 010206 450 QTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 450 ~~~~~~~l~s~~~d~~v~l 468 (515)
.+.||+|++..+...-+-+
T Consensus 626 vt~DGkwilaTc~tyLlLi 644 (794)
T PF08553_consen 626 VTADGKWILATCKTYLLLI 644 (794)
T ss_pred ecCCCcEEEEeecceEEEE
Confidence 9999999888777666555
No 341
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.66 E-value=0.021 Score=55.45 Aligned_cols=119 Identities=13% Similarity=0.125 Sum_probs=72.4
Q ss_pred cCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccC-----ccccccCCceEEEEEecCCCcEEEEEecCC
Q 010206 234 DYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKP-----ANMEDLTEVITSAEFHPTHCNMLAYSSSKG 306 (515)
Q Consensus 234 ~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg 306 (515)
......+.++|||++++++ -+.+|.+.|+.+.+..+.-- +++ ...+ -.......+|.++| +.+.+-..|.
T Consensus 320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~-~~~~~~vvaeve-vGlGPLHTaFDg~G-~aytslf~ds 396 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK-IKPRDAVVAEPE-LGLGPLHTAFDGRG-NAYTTLFLDS 396 (635)
T ss_pred CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc-CCccceEEEeec-cCCCcceEEECCCC-CEEEeEeecc
Confidence 3556789999999999986 59999999998765422100 011 0111 12334567899998 7888888899
Q ss_pred eEEEEecCcc------cccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC
Q 010206 307 SIRLIDMRQS------ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY 362 (515)
Q Consensus 307 ~i~~wd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~ 362 (515)
.|..||+... +.....+..++.+.. .+|......=.-.|||++|++...
T Consensus 397 qv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~-------pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 397 QIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQ-------PGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred eeEEEehHHHHHHhccccCCcceecccCCCc-------cceeeecCCCcCCCCCCEEEEccc
Confidence 9999998762 111111222222221 233333333334678999998653
No 342
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.64 E-value=0.018 Score=58.01 Aligned_cols=212 Identities=16% Similarity=0.189 Sum_probs=114.3
Q ss_pred CcEEEee-eCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCc
Q 010206 126 SALYLLS-TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGV 204 (515)
Q Consensus 126 ~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~ 204 (515)
..+|+.. .....|+-.|++.|++......+.... ...+.|+.+.-. ...+-.+.|-.+
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~----------------v~~~~p~~K~aq-----lt~e~tflGls~ 551 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIP----------------VVDIAPDSKFAQ-----LTNEQTFLGLSD 551 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcc----------------eeEecccccccc-----cCCCceEEEECC
Confidence 3344443 355778888999998877666553210 123334333210 011222667777
Q ss_pred ccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCC
Q 010206 205 SSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTE 284 (515)
Q Consensus 205 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 284 (515)
+.+..||.|+.. ........+.| .......|++-+.+|.+.+.+.+|.||+||-- ++.... .+.+...
T Consensus 552 n~lfriDpR~~~--~k~v~~~~k~Y--~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~~AKT-------~lp~lG~ 619 (794)
T PF08553_consen 552 NSLFRIDPRLSG--NKLVDSQSKQY--SSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GKRAKT-------ALPGLGD 619 (794)
T ss_pred CceEEeccCCCC--Cceeecccccc--ccCCCceEEEecCCceEEEEeCCCcEEeeccc-chhhhh-------cCCCCCC
Confidence 888888832211 11111111111 34456788888888855444489999999943 332221 4567789
Q ss_pred ceEEEEEecCCCcEEEEEecCCeEEEEecCc--ccc--cccccceeeeccCCCccc--ccccccc----------ceeEE
Q 010206 285 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ--SAL--CDTHSKLFEEQEAPGTRS--FFTEIIA----------SISDI 348 (515)
Q Consensus 285 ~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~--~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~----------~i~~~ 348 (515)
+|..|..+.|| ++++.. -+..+.|++..- ++. .....+.+.....|.++. .-..|.. ..+..
T Consensus 620 pI~~iDvt~DG-kwilaT-c~tyLlLi~t~~~~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a 697 (794)
T PF08553_consen 620 PIIGIDVTADG-KWILAT-CKTYLLLIDTLIKDGKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPA 697 (794)
T ss_pred CeeEEEecCCC-cEEEEe-ecceEEEEEEeeecCCccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeece
Confidence 99999999999 666643 455778887632 110 001112222212222211 1112221 12234
Q ss_pred EEcc----CCCEEEEEcCCeEEEEEeeC
Q 010206 349 KFAR----NGRHILSRDYMTLKLWDINM 372 (515)
Q Consensus 349 ~~s~----~~~~l~s~~~~~i~iwd~~~ 372 (515)
.|+. ..+.|+++....+.+|+++.
T Consensus 698 ~Fnt~~~~~E~~IvtstG~f~v~Wnf~k 725 (794)
T PF08553_consen 698 KFNTGIGKQETSIVTSTGPFVVTWNFKK 725 (794)
T ss_pred EEecCCCCccceEEEeccCEEEEEEHHH
Confidence 4432 35678887778999999863
No 343
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.62 E-value=0.00051 Score=65.54 Aligned_cols=123 Identities=10% Similarity=0.121 Sum_probs=89.0
Q ss_pred cCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEE
Q 010206 232 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 310 (515)
Q Consensus 232 ~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~ 310 (515)
.+...|.--+++..+++++.| +-|.+++|+-..+..... +..+..+.+..+..+++. .++|.|+..|.|.+
T Consensus 31 ~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~-------~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v 102 (726)
T KOG3621|consen 31 FFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL-------KNEGATGITCVRSVSSVE-YLVAAGTASGRVSV 102 (726)
T ss_pred cCcceEEEEEeecCCceEEEecccceEEEEecCchhhhcc-------cccCccceEEEEEecchh-HhhhhhcCCceEEe
Confidence 344556666778889999999 899999999876554321 233345556677788887 89999999999999
Q ss_pred EecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeC
Q 010206 311 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM 372 (515)
Q Consensus 311 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~ 372 (515)
+-+..... ......-.. -..|...|++++|++++..+++|++ |+|.+-.+..
T Consensus 103 ~ql~~~~p-~~~~~~t~~---------d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 103 FQLNKELP-RDLDYVTPC---------DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ehhhccCC-Ccceeeccc---------cccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 98877332 111111111 1236789999999999999999998 9998887764
No 344
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.61 E-value=0.023 Score=49.18 Aligned_cols=177 Identities=7% Similarity=0.043 Sum_probs=87.7
Q ss_pred eccCcCCeEEEEecCCCCEEEE-e-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCe
Q 010206 230 AHAHDYHINSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 307 (515)
Q Consensus 230 ~~~~~~~v~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~ 307 (515)
+.+-...+..++|+|+...|++ . ..+.|..++.+ ++ ..+.+ .+.+ .+-.-.|++..++ .++++.-.++.
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~-vlr~i-----~l~g-~~D~EgI~y~g~~-~~vl~~Er~~~ 87 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GK-VLRRI-----PLDG-FGDYEGITYLGNG-RYVLSEERDQR 87 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEE-----E-SS--SSEEEEEE-STT-EEEEEETTTTE
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CC-EEEEE-----eCCC-CCCceeEEEECCC-EEEEEEcCCCc
Confidence 3455567999999998776665 4 57888777764 33 33222 3333 3456788898777 66665556899
Q ss_pred EEEEecCccccccc--ccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeC--CCCCeeeEee
Q 010206 308 IRLIDMRQSALCDT--HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM--DSGPVATFQV 382 (515)
Q Consensus 308 i~~wd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~--~~~~~~~~~~ 382 (515)
+.++++........ ....+... +...+...+-.++|+|.++.|+.+.+ .-..+|.+.. ....+.....
T Consensus 88 L~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~ 160 (248)
T PF06977_consen 88 LYIFTIDDDTTSLDRADVQKISLG-------FPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDD 160 (248)
T ss_dssp EEEEEE----TT--EEEEEEEE----------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-
T ss_pred EEEEEEeccccccchhhceEEecc-------cccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccc
Confidence 99998854321111 01111110 01123356899999997666666543 5556666653 1111111110
Q ss_pred eccccccccccccCCCccceeeEEEcCCC-CEEEEecCCCcEEEEecC
Q 010206 383 HEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~s~dg~i~iw~~~ 429 (515)
.. ... ....+.+..+++++|.. .+++....+..|.++|..
T Consensus 161 ~~-~~~------~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~ 201 (248)
T PF06977_consen 161 QD-LDD------DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ 201 (248)
T ss_dssp HH-HH-------HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT
T ss_pred cc-ccc------ccceeccccceEEcCCCCeEEEEECCCCeEEEECCC
Confidence 00 000 11122334588999865 456666777888888844
No 345
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.50 E-value=0.027 Score=47.47 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=77.2
Q ss_pred EecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEE
Q 010206 291 FHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWD 369 (515)
Q Consensus 291 ~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd 369 (515)
..++...+++.|+..+.+.--|..+|++..+.+.. ..|.+-+.- -|.+++.|.. |.+++.+
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg-----------------~RiE~sa~v-vgdfVV~GCy~g~lYfl~ 79 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILG-----------------VRIECSAIV-VGDFVVLGCYSGGLYFLC 79 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehhhC-----------------ceeeeeeEE-ECCEEEEEEccCcEEEEE
Confidence 34454478889999999999999999876542111 112222221 4678888877 9999999
Q ss_pred eeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc
Q 010206 370 INMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
..+ +.....+...+.... +....+++..+..|+.|+..+.-|.++.++.
T Consensus 80 ~~t-Gs~~w~f~~~~~vk~---------------~a~~d~~~glIycgshd~~~yalD~~~~~cV 128 (354)
T KOG4649|consen 80 VKT-GSQIWNFVILETVKV---------------RAQCDFDGGLIYCGSHDGNFYALDPKTYGCV 128 (354)
T ss_pred ecc-hhheeeeeehhhhcc---------------ceEEcCCCceEEEecCCCcEEEecccccceE
Confidence 997 666666554443321 4566789999999999999999999987554
No 346
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.50 E-value=0.067 Score=47.96 Aligned_cols=262 Identities=9% Similarity=0.028 Sum_probs=125.6
Q ss_pred cCCCcEEEeee----------CCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 123 SANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 123 ~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
+++++.+++++ ....|.+||..+........+...+.... . ......+++.||+.+-+
T Consensus 44 spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~--~------~~~~~~~ls~dgk~~~V---- 111 (342)
T PF06433_consen 44 SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV--V------PYKNMFALSADGKFLYV---- 111 (342)
T ss_dssp -TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B--S--------GGGEEE-TTSSEEEE----
T ss_pred CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee--c------ccccceEEccCCcEEEE----
Confidence 44566666542 34579999999987766555543211100 0 01115678888887722
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCccccee
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIV 272 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~ 272 (515)
.-.+-..+|.+-| +... +..... ....+..+--.++..+...|.||++.-..+....+.....
T Consensus 112 ------~N~TPa~SVtVVD--l~~~------kvv~ei---~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 112 ------QNFTPATSVTVVD--LAAK------KVVGEI---DTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp ------EEESSSEEEEEEE--TTTT------EEEEEE---EGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred ------EccCCCCeEEEEE--CCCC------ceeeee---cCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence 2223334555544 1111 111111 0011111211223334444688888888777444332111
Q ss_pred cccCccccccCCceE-EEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 273 DVKPANMEDLTEVIT-SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 273 ~~~~~~~~~~~~~i~-~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
...+....+++. .-++...+ ..++--+.+|.|+--|+....... ...+......... -.--.+...-++++
T Consensus 175 ---t~~F~~~~dp~f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~~--~~~~~~~t~~e~~--~~WrPGG~Q~~A~~ 246 (342)
T PF06433_consen 175 ---TKVFDPDDDPLFEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSAKF--GKPWSLLTDAEKA--DGWRPGGWQLIAYH 246 (342)
T ss_dssp ---EEESSTTTS-B-S--EEETTT-TEEEEEBTTSEEEEEEETTSSEEE--EEEEESS-HHHHH--TTEEE-SSS-EEEE
T ss_pred ---ccccCCCCcccccccceECCC-CeEEEEecCCEEEEEeccCCcccc--cCcccccCccccc--cCcCCcceeeeeec
Confidence 011222222222 33444444 455557889999888886654211 1222110000000 00011445567888
Q ss_pred cCCCEEEE----Ec-----C--CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCC-EEEEe-c
Q 010206 352 RNGRHILS----RD-----Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATG-S 418 (515)
Q Consensus 352 ~~~~~l~s----~~-----~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~-s 418 (515)
+....|+. |. + ..|.++|+.+ ++.+.++..... +.++..+.|.+ +|++. .
T Consensus 247 ~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l~~~----------------~~Si~Vsqd~~P~L~~~~~ 309 (342)
T PF06433_consen 247 AASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT-HKRVARIPLEHP----------------IDSIAVSQDDKPLLYALSA 309 (342)
T ss_dssp TTTTEEEEEEEE--TT-TTS-EEEEEEEETTT-TEEEEEEEEEEE----------------ESEEEEESSSS-EEEEEET
T ss_pred cccCeEEEEecCCCCCCccCCceEEEEEECCC-CeEEEEEeCCCc----------------cceEEEccCCCcEEEEEcC
Confidence 75555543 21 2 3577777776 777777765432 23788888776 56544 4
Q ss_pred CCCcEEEEecCCCCcceeeec
Q 010206 419 YSNLFRVFGCSEGSAESTTLE 439 (515)
Q Consensus 419 ~dg~i~iw~~~~~~~~~~~~~ 439 (515)
.++.+.+||..+++ ++.+++
T Consensus 310 ~~~~l~v~D~~tGk-~~~~~~ 329 (342)
T PF06433_consen 310 GDGTLDVYDAATGK-LVRSIE 329 (342)
T ss_dssp TTTEEEEEETTT---EEEEE-
T ss_pred CCCeEEEEeCcCCc-EEeehh
Confidence 68999999999984 444443
No 347
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.49 E-value=0.1 Score=49.68 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=29.5
Q ss_pred cceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEee
Q 010206 343 ASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV 382 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~ 382 (515)
+++..+++||+|+++|.-.+ |.+.+...+. .+.+..+..
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf-~~~~~e~~~ 256 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDF-SEKLCEFDT 256 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcc-cceeEEeec
Confidence 57999999999999998766 8988887664 444444443
No 348
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.49 E-value=0.035 Score=51.14 Aligned_cols=175 Identities=11% Similarity=0.111 Sum_probs=97.4
Q ss_pred CcEEEEeCCCC-C--cccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCccc-ccccccceeeecc
Q 010206 255 LRINLWNLEIS-N--QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA-LCDTHSKLFEEQE 330 (515)
Q Consensus 255 ~~i~iwd~~~~-~--~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~~~ 330 (515)
|.|.++++... . ...+.+ ......++|++++-- ++ + |+. +..+.|.+|++...+ +... ..++
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i-----~~~~~~g~V~ai~~~-~~-~-lv~-~~g~~l~v~~l~~~~~l~~~--~~~~--- 127 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLI-----HSTEVKGPVTAICSF-NG-R-LVV-AVGNKLYVYDLDNSKTLLKK--AFYD--- 127 (321)
T ss_dssp EEEEEEEECSS-----EEEEE-----EEEEESS-EEEEEEE-TT-E-EEE-EETTEEEEEEEETTSSEEEE--EEE----
T ss_pred cEEEEEEEEcccccceEEEEE-----EEEeecCcceEhhhh-CC-E-EEE-eecCEEEEEEccCcccchhh--heec---
Confidence 88999999874 1 111111 223357889999877 44 4 443 345799999998776 2211 0000
Q ss_pred CCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcC
Q 010206 331 APGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 409 (515)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 409 (515)
....+.++... +.+++.|+- ..+.++.++.....+..+...... ..++++.|-+
T Consensus 128 ----------~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~-------------~~v~~~~~l~ 182 (321)
T PF03178_consen 128 ----------SPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQP-------------RWVTAAEFLV 182 (321)
T ss_dssp ----------BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS--------------BEEEEEEEE-
T ss_pred ----------ceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCC-------------ccEEEEEEec
Confidence 11245555544 669999886 889988777433334433322211 1256788886
Q ss_pred CCCEEEEecCCCcEEEEecCCC------C--cceeeeccC-CCceeeE---EECCC--C------CeeEeecCCCeEEE
Q 010206 410 DGGRVATGSYSNLFRVFGCSEG------S--AESTTLEAS-KNPMRRQ---VQTPS--R------PSRPLGSLSGVVRR 468 (515)
Q Consensus 410 ~~~~l~s~s~dg~i~iw~~~~~------~--~~~~~~~~~-~~~v~~~---~~~~~--~------~~l~s~~~d~~v~l 468 (515)
+++.++.+..+|.+.++..... + .+......| .+.++++ ...|. + +.++.++.+|.|-.
T Consensus 183 d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 183 DEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred CCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 6678999999999999987631 1 121222222 3556666 33441 1 24777888888774
No 349
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.39 E-value=0.13 Score=48.85 Aligned_cols=57 Identities=12% Similarity=0.065 Sum_probs=39.0
Q ss_pred eeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccC-CCceeeEEECCCCCeeEe
Q 010206 402 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS-KNPMRRQVQTPSRPSRPL 459 (515)
Q Consensus 402 v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s 459 (515)
+..+++||+|++||.-..+|.+.+.+..-. .....+... ..+...+.|..+...++.
T Consensus 219 i~~iavSpng~~iAl~t~~g~l~v~ssDf~-~~~~e~~~~~~~~p~~~~WCG~dav~l~ 276 (410)
T PF04841_consen 219 IIKIAVSPNGKFIALFTDSGNLWVVSSDFS-EKLCEFDTDSKSPPKQMAWCGNDAVVLS 276 (410)
T ss_pred eEEEEECCCCCEEEEEECCCCEEEEECccc-ceeEEeecCcCCCCcEEEEECCCcEEEE
Confidence 458999999999999999999998875433 222333333 445668888766544433
No 350
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.0072 Score=56.13 Aligned_cols=141 Identities=11% Similarity=0.128 Sum_probs=91.1
Q ss_pred EEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCC--------CEEEEEcCCeEEEEE
Q 010206 298 MLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG--------RHILSRDYMTLKLWD 369 (515)
Q Consensus 298 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--------~~l~s~~~~~i~iwd 369 (515)
+|.++.....++-.|++.|+.+. .|..+. .|.-+.+.|+. +.|+.-++..|.-||
T Consensus 348 il~~~~~~~~l~klDIE~GKIVe----EWk~~~-------------di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriD 410 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVE----EWKFED-------------DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRID 410 (644)
T ss_pred EeeCCCCcCcceeeecccceeee----EeeccC-------------CcceeeccCCcchhcccccccEEeecCCceEEec
Confidence 45566666778888999888753 233221 25556666643 234444668899999
Q ss_pred eeCCCC-CeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeE
Q 010206 370 INMDSG-PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQ 448 (515)
Q Consensus 370 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~ 448 (515)
.+-.++ .+....+|.... +.-+ .|.+-. ...+|+.||.+|.|++||. .+..-...+++-..+|..+
T Consensus 411 pRv~~~~kl~~~q~kqy~~---------k~nF--sc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hV 477 (644)
T KOG2395|consen 411 PRVQGKNKLAVVQSKQYST---------KNNF--SCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHV 477 (644)
T ss_pred ccccCcceeeeeecccccc---------cccc--ceeeec-CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeE
Confidence 986444 233333333221 1111 133333 4457999999999999998 4544446788999999999
Q ss_pred EECCCCCeeEeecCCCeEEE
Q 010206 449 VQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 449 ~~~~~~~~l~s~~~d~~v~l 468 (515)
..+.+|++++..+...-+.+
T Consensus 478 dvtadGKwil~Tc~tyLlLi 497 (644)
T KOG2395|consen 478 DVTADGKWILATCKTYLLLI 497 (644)
T ss_pred EeeccCcEEEEecccEEEEE
Confidence 99999999888776655554
No 351
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.36 E-value=0.0084 Score=56.93 Aligned_cols=136 Identities=10% Similarity=0.079 Sum_probs=73.0
Q ss_pred cceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCc
Q 010206 343 ASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 422 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~ 422 (515)
.....+.++|+|++++.+++|...|+.... .+ ....+.. ...+|.+.++ +|+-...++
T Consensus 33 ~~p~~ls~npngr~v~V~g~geY~iyt~~~-~r--~k~~G~g------------------~~~vw~~~n~-yAv~~~~~~ 90 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVCGDGEYEIYTALA-WR--NKAFGSG------------------LSFVWSSRNR-YAVLESSST 90 (443)
T ss_dssp S--SEEEE-TTSSEEEEEETTEEEEEETTT-TE--EEEEEE-------------------SEEEE-TSSE-EEEE-TTS-
T ss_pred cCCeeEEECCCCCEEEEEcCCEEEEEEccC-Cc--ccccCce------------------eEEEEecCcc-EEEEECCCe
Confidence 457889999999999999889988988331 11 1122221 1789999665 555555788
Q ss_pred EEEE-ecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEec--CCCCCccccCCccccccCCeeEEEEcCCC
Q 010206 423 FRVF-GCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK--GADNSALDANGNAFDFSMKLLHLAWHPSE 499 (515)
Q Consensus 423 i~iw-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~--~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 499 (515)
|.|+ +++.. ....++... .+..+-. |..|...+.+ .|.+++ ..+.. ..+.. ..|..+.|++++
T Consensus 91 I~I~kn~~~~--~~k~i~~~~-~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i------~~i~v-~~vk~V~Ws~~g 156 (443)
T PF04053_consen 91 IKIYKNFKNE--VVKSIKLPF-SVEKIFG---GNLLGVKSSD-FICFYDWETGKLI------RRIDV-SAVKYVIWSDDG 156 (443)
T ss_dssp EEEEETTEE---TT-----SS--EEEEE----SSSEEEEETT-EEEEE-TTT--EE------EEESS--E-EEEEE-TTS
T ss_pred EEEEEcCccc--cceEEcCCc-ccceEEc---CcEEEEECCC-CEEEEEhhHccee------eEEec-CCCcEEEEECCC
Confidence 9996 44322 111222211 2222322 7777777655 666632 22221 11111 238999999999
Q ss_pred CEEEEEcCCcEEEEe
Q 010206 500 NSIACAASNSLYMYY 514 (515)
Q Consensus 500 ~~la~~~~~~~~i~~ 514 (515)
+++|..+.+.++|+.
T Consensus 157 ~~val~t~~~i~il~ 171 (443)
T PF04053_consen 157 ELVALVTKDSIYILK 171 (443)
T ss_dssp SEEEEE-S-SEEEEE
T ss_pred CEEEEEeCCeEEEEE
Confidence 999999999998864
No 352
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.33 E-value=0.049 Score=48.79 Aligned_cols=264 Identities=11% Similarity=0.100 Sum_probs=125.2
Q ss_pred eEEEEECCCCCeEEeec----------CCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccc
Q 010206 38 ISAIEFDKSGDHLATGD----------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (515)
Q Consensus 38 v~~v~~s~~g~~lasg~----------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (515)
.-.+..||||+.+++++ +.-.|.+||..+-...+.+..+.. .+....
T Consensus 38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k-----------~R~~~~------------ 94 (342)
T PF06433_consen 38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPK-----------PRAQVV------------ 94 (342)
T ss_dssp SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS------------B--BS------------
T ss_pred CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCc-----------chheec------------
Confidence 34467899999988753 234699999887654321111000 000000
Q ss_pred cccccceeEEEEEeecCCCcEEEee--eCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCC-C
Q 010206 108 SLEIEEKINKIRWCQSANSALYLLS--TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG-G 184 (515)
Q Consensus 108 ~~~~~~~v~~l~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g-~ 184 (515)
...+.+++ +.+++++++. +--..|.+-|+..++......... +...-|.+ .
T Consensus 95 -----~~~~~~~l--s~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG-------------------C~~iyP~~~~ 148 (342)
T PF06433_consen 95 -----PYKNMFAL--SADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG-------------------CWLIYPSGNR 148 (342)
T ss_dssp -------GGGEEE---TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS-------------------EEEEEEEETT
T ss_pred -----ccccceEE--ccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC-------------------EEEEEecCCC
Confidence 01122233 4556666663 445567778888777665544331 11111211 1
Q ss_pred ccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC-CCEEEEeCCCcEEEEeCC
Q 010206 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISADDLRINLWNLE 263 (515)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~d~~i~iwd~~ 263 (515)
.+ .+.|.||.+.-.. +.. ++....+....|.......+..-++... +.++...-+|.|+--|+.
T Consensus 149 ~F------------~~lC~DGsl~~v~--Ld~-~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dls 213 (342)
T PF06433_consen 149 GF------------SMLCGDGSLLTVT--LDA-DGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLS 213 (342)
T ss_dssp EE------------EEEETTSCEEEEE--ETS-TSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEET
T ss_pred ce------------EEEecCCceEEEE--ECC-CCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEecc
Confidence 12 5667777776655 332 2222222222222222222223334333 445555678888888876
Q ss_pred CCCcccc-eecccC---ccccccCCceEEEEEecCCCcEEEEEec-------CC--eEEEEecCcccccccccceeeecc
Q 010206 264 ISNQSFN-IVDVKP---ANMEDLTEVITSAEFHPTHCNMLAYSSS-------KG--SIRLIDMRQSALCDTHSKLFEEQE 330 (515)
Q Consensus 264 ~~~~~~~-~~~~~~---~~~~~~~~~i~~i~~~p~~~~~l~~~~~-------dg--~i~~wd~~~~~~~~~~~~~~~~~~ 330 (515)
....... -+.+-. ..-..-.+.-.-+++++...++++.-.. |+ .|-++|+.+++.+.+ ++.
T Consensus 214 g~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~R----i~l-- 287 (342)
T PF06433_consen 214 GDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVAR----IPL-- 287 (342)
T ss_dssp TSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEE----EEE--
T ss_pred CCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEE----EeC--
Confidence 5432211 010000 0001112333456777655233332221 11 477778887765432 221
Q ss_pred CCCccccccccccceeEEEEccCCC-EEEEEc--CCeEEEEEeeCCCCCeeeEeee
Q 010206 331 APGTRSFFTEIIASISDIKFARNGR-HILSRD--YMTLKLWDINMDSGPVATFQVH 383 (515)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~--~~~i~iwd~~~~~~~~~~~~~~ 383 (515)
..++.+|.++.+.+ +|++.+ ++.|.+||..+ ++.+.++..-
T Consensus 288 -----------~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t-Gk~~~~~~~l 331 (342)
T PF06433_consen 288 -----------EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT-GKLVRSIEQL 331 (342)
T ss_dssp -----------EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT---EEEEE---
T ss_pred -----------CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcC-CcEEeehhcc
Confidence 14588999998766 554433 48999999997 7877777643
No 353
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.30 E-value=0.00045 Score=39.93 Aligned_cols=31 Identities=19% Similarity=0.483 Sum_probs=28.9
Q ss_pred ccccceEEEEECCCCCeEEeecCCCeEEEEE
Q 010206 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFE 63 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~ 63 (515)
.|...|.+++|++++.++++++.|+.+++|+
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 5788999999999999999999999999996
No 354
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.24 E-value=0.09 Score=49.15 Aligned_cols=148 Identities=15% Similarity=0.250 Sum_probs=76.7
Q ss_pred CcCCeEEEEecCCCCEEEE-e--C---CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEe-cCCCcEEEEEecC
Q 010206 233 HDYHINSISNNSDGETFIS-A--D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-PTHCNMLAYSSSK 305 (515)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~s-~--~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~-p~~~~~l~~~~~d 305 (515)
....+..+.|.++++.|+. - . ...+.+.|..++.......... .+--..-....|. +++..++.....+
T Consensus 182 ~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~----~~Wv~~~~~~~~~~~~~~~~l~~s~~~ 257 (353)
T PF00930_consen 182 QDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETS----DGWVDVYDPPHFLGPDGNEFLWISERD 257 (353)
T ss_dssp SSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEES----SSSSSSSSEEEE-TTTSSEEEEEEETT
T ss_pred CccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecC----CcceeeecccccccCCCCEEEEEEEcC
Confidence 3566889999999984443 2 2 2345566776554332211111 1111222345554 6664666666677
Q ss_pred CeEEEE--ecCcccccccccceeeeccCCCcccccccccccee-EEEEccCCCEEE-EEc--C-CeEEEEEeeCC-CCCe
Q 010206 306 GSIRLI--DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS-DIKFARNGRHIL-SRD--Y-MTLKLWDINMD-SGPV 377 (515)
Q Consensus 306 g~i~~w--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~-s~~--~-~~i~iwd~~~~-~~~~ 377 (515)
|.-+|| +...+.. +. +....-.|. -+.++++++.|+ ++. . ..-.||.+... +..+
T Consensus 258 G~~hly~~~~~~~~~-----~~------------lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~ 320 (353)
T PF00930_consen 258 GYRHLYLYDLDGGKP-----RQ------------LTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP 320 (353)
T ss_dssp SSEEEEEEETTSSEE-----EE------------SS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE
T ss_pred CCcEEEEEcccccce-----ec------------cccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe
Confidence 765554 4444331 11 111223453 467788777655 343 2 56667776653 4444
Q ss_pred eeEeeeccccccccccccCCCccceeeEEEcCCCCEEEE
Q 010206 378 ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT 416 (515)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 416 (515)
..+....... ..+.|||++++++-
T Consensus 321 ~~LT~~~~~~---------------~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 321 KCLTCEDGDH---------------YSASFSPDGKYYVD 344 (353)
T ss_dssp EESSTTSSTT---------------EEEEE-TTSSEEEE
T ss_pred EeccCCCCCc---------------eEEEECCCCCEEEE
Confidence 5554333221 27999999998773
No 355
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=0.11 Score=48.97 Aligned_cols=194 Identities=15% Similarity=0.164 Sum_probs=119.5
Q ss_pred CeEEEEecCCCCEEEE-e-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEe--cCCeEEEE
Q 010206 236 HINSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--SKGSIRLI 311 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~--~dg~i~~w 311 (515)
....+++++.+..+.. . ++..|.+.|..+.+....+ .-......++++|++..+.++-. .++.+.+.
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~---------~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvi 145 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSI---------PVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVI 145 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEe---------eeccCCceEEECCCCCEEEEEecccCCceEEEE
Confidence 3456778888885554 4 6899999997655443221 11225678999999844444444 26888888
Q ss_pred ecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc--CCeEEEEEeeCCCCCee-----eEeeec
Q 010206 312 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVA-----TFQVHE 384 (515)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~~~i~iwd~~~~~~~~~-----~~~~~~ 384 (515)
|-.+.+.... ...+ ..+ ..++++|+|..++... ++.|.+.|... ..... ......
T Consensus 146 d~~t~~~~~~---~~vG-------------~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~-~~v~~~~~~~~~~~~~ 207 (381)
T COG3391 146 DAATNKVTAT---IPVG-------------NTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSG-NSVVRGSVGSLVGVGT 207 (381)
T ss_pred eCCCCeEEEE---EecC-------------CCc-ceEEECCCCCeEEEEecCCCeEEEEeCCC-cceeccccccccccCC
Confidence 8877765322 0110 023 7899999999888765 49999999764 22221 011111
Q ss_pred cccccccccccCCCccceeeEEEcCCCCEEEEecC---CCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEee-
Q 010206 385 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY---SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG- 460 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~---dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~- 460 (515)
. -..+.++|+|+++..... ++.+...|..++................+...|+++.+...
T Consensus 208 ~----------------P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~ 271 (381)
T COG3391 208 G----------------PAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVAN 271 (381)
T ss_pred C----------------CceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEe
Confidence 1 126899999997665443 26888889887633322122221145578899999987766
Q ss_pred cCCCeEEEecCC
Q 010206 461 SLSGVVRRVKGA 472 (515)
Q Consensus 461 ~~d~~v~l~~~~ 472 (515)
+..+.+.++++.
T Consensus 272 ~~~~~V~vid~~ 283 (381)
T COG3391 272 SQGGTVSVIDGA 283 (381)
T ss_pred cCCCeEEEEeCC
Confidence 334677774433
No 356
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.22 E-value=0.031 Score=40.85 Aligned_cols=64 Identities=14% Similarity=0.205 Sum_probs=38.7
Q ss_pred CCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEe---cCCCcEEEEEecCCeEEE
Q 010206 235 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH---PTHCNMLAYSSSKGSIRL 310 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~---p~~~~~l~~~~~dg~i~~ 310 (515)
..|.+++-... ..|+.+ .+|+|-+|+-... ..+ . . .+..+.++.+. -+|...|++|-.+|.|-+
T Consensus 43 ~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R--lWR---i-----K-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 43 DKVTSLCSLGG-GRFAYALANGTVGVYDRSQR--LWR---I-----K-SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred cceEEEEEcCC-CEEEEEecCCEEEEEeCcce--eee---e-----c-cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 45566665555 457777 8999999875422 211 1 1 23335666553 345458999999998753
No 357
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.21 E-value=0.15 Score=45.76 Aligned_cols=229 Identities=14% Similarity=0.128 Sum_probs=120.9
Q ss_pred CCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccc
Q 010206 244 SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH 322 (515)
Q Consensus 244 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 322 (515)
..++.|+.| ++| +.++++.......++. +...|..+...|+- +.+++- .|+.+.++++.........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~---------~~~~I~ql~vl~~~-~~llvL-sd~~l~~~~L~~l~~~~~~ 72 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL---------KLSSITQLSVLPEL-NLLLVL-SDGQLYVYDLDSLEPVSTS 72 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe---------ecceEEEEEEeccc-CEEEEE-cCCccEEEEchhhcccccc
Confidence 457788888 777 8999983333322221 23349999999986 455444 3599999999875543211
Q ss_pred cceeeeccCCCccccccccccceeEEE---EccCCCEEEEEcCCeEEEEEeeCCC----CCeeeEeeecccccccccccc
Q 010206 323 SKLFEEQEAPGTRSFFTEIIASISDIK---FARNGRHILSRDYMTLKLWDINMDS----GPVATFQVHEHLRPKLCDLYE 395 (515)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~i~~~~---~s~~~~~l~s~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~ 395 (515)
. ......... ..........+..++ -...+..|+.+...+|.+|...... +..+.+.....
T Consensus 73 ~-~~~~~~~~~-~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~---------- 140 (275)
T PF00780_consen 73 A-PLAFPKSRS-LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDP---------- 140 (275)
T ss_pred c-ccccccccc-ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCC----------
Confidence 0 000000000 000000112333333 1224556666766799999987521 23344433322
Q ss_pred CCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeec--c----------CCCceeeEEECCCCCeeEeecCC
Q 010206 396 NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE--A----------SKNPMRRQVQTPSRPSRPLGSLS 463 (515)
Q Consensus 396 ~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~--~----------~~~~v~~~~~~~~~~~l~s~~~d 463 (515)
+..++|. ++.|+.|..+ ...+.|+.++... ..+. . ...++..+. .+++.+|++. .+
T Consensus 141 ------~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Ll~~-~~ 208 (275)
T PF00780_consen 141 ------PSSIAFL--GNKICVGTSK-GFYLIDLNTGSPS-ELLDPSDSSSSFKSRNSSSKPLGIFQ-LSDNEFLLCY-DN 208 (275)
T ss_pred ------cEEEEEe--CCEEEEEeCC-ceEEEecCCCCce-EEeCccCCcchhhhcccCCCceEEEE-eCCceEEEEe-cc
Confidence 2378887 5577777654 4778899866332 1111 1 112333333 3445666554 34
Q ss_pred CeEEE-ecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcEEEEeC
Q 010206 464 GVVRR-VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 515 (515)
Q Consensus 464 ~~v~l-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~i~~~ 515 (515)
-.+.+ ..|..... ..+.......++++ ...+|.+-.++.+-||+.
T Consensus 209 ~g~fv~~~G~~~r~-----~~i~W~~~p~~~~~--~~pyli~~~~~~iEV~~~ 254 (275)
T PF00780_consen 209 IGVFVNKNGEPSRK-----STIQWSSAPQSVAY--SSPYLIAFSSNSIEVRSL 254 (275)
T ss_pred eEEEEcCCCCcCcc-----cEEEcCCchhEEEE--ECCEEEEECCCEEEEEEC
Confidence 44444 32322111 12223556677777 456888888888888863
No 358
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0018 Score=61.23 Aligned_cols=77 Identities=19% Similarity=0.219 Sum_probs=61.6
Q ss_pred CCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceE-EEEEecCCCcEEEEEecCCeEEEEe
Q 010206 235 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT-SAEFHPTHCNMLAYSSSKGSIRLID 312 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~-~i~~~p~~~~~l~~~~~dg~i~~wd 312 (515)
..+.-+.|+|.-.++|.+ .+|.|.+..++ .+.. + ++.-+...++ +++|.||| ++|+.|-.||+|++.|
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRl---w-----tip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~D 90 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRL---W-----TIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHD 90 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-ccee---E-----eccCCCCccceeeeecCCC-CEEEEEecCCeEEEEE
Confidence 456778999999999999 89999988887 3322 2 3343455555 99999999 9999999999999999
Q ss_pred cCccccccc
Q 010206 313 MRQSALCDT 321 (515)
Q Consensus 313 ~~~~~~~~~ 321 (515)
+.++..+..
T Consensus 91 ve~~~~l~~ 99 (665)
T KOG4640|consen 91 VEKGGRLVS 99 (665)
T ss_pred ccCCCceec
Confidence 999876543
No 359
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.10 E-value=0.16 Score=45.81 Aligned_cols=98 Identities=10% Similarity=0.093 Sum_probs=60.7
Q ss_pred cceeEEEEccCCCEEEEEcC--CeEEEEEeeC-CCCCe----eeEe-eeccccccccccccCCCccceeeEEEcCCCCEE
Q 010206 343 ASISDIKFARNGRHILSRDY--MTLKLWDINM-DSGPV----ATFQ-VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 414 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~-~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 414 (515)
..-+.++||||++.|+..+. +.|.-|++.. ....- .... ...+... .++...+|.+.
T Consensus 163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PD---------------G~~vDadG~lw 227 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPD---------------GMAVDADGNLW 227 (307)
T ss_pred EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCC---------------ceEEeCCCCEE
Confidence 45678999999998888754 8888887762 11111 1111 1111111 67888899987
Q ss_pred EEecCCC-cEEEEecCCCCcceeeeccCCCceeeEEE-CCCCCee
Q 010206 415 ATGSYSN-LFRVFGCSEGSAESTTLEASKNPMRRQVQ-TPSRPSR 457 (515)
Q Consensus 415 ~s~s~dg-~i~iw~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l 457 (515)
+++-.+| .|..|+.. + .++...+.....+++++| .|+.+.|
T Consensus 228 ~~a~~~g~~v~~~~pd-G-~l~~~i~lP~~~~t~~~FgG~~~~~L 270 (307)
T COG3386 228 VAAVWGGGRVVRFNPD-G-KLLGEIKLPVKRPTNPAFGGPDLNTL 270 (307)
T ss_pred EecccCCceEEEECCC-C-cEEEEEECCCCCCccceEeCCCcCEE
Confidence 6554444 99999988 5 555666665556666666 3444444
No 360
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.08 E-value=0.0022 Score=38.83 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=30.0
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERT 65 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~ 65 (515)
......|.+++|+|..++||.|+.+|.|.||.+.
T Consensus 8 k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 8 KNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred cCCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3445679999999999999999999999999983
No 361
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.07 E-value=0.079 Score=45.56 Aligned_cols=201 Identities=17% Similarity=0.162 Sum_probs=108.6
Q ss_pred eEEEEEecCCCcEEEEEecCCe-EEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc---
Q 010206 286 ITSAEFHPTHCNMLAYSSSKGS-IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--- 361 (515)
Q Consensus 286 i~~i~~~p~~~~~l~~~~~dg~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--- 361 (515)
-..++|+|..+.-++.+-.-|+ ..++|....+.... ....+ ...+.+| =.|||||++|++..
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~----~~s~~----~RHfyGH------Gvfs~dG~~LYATEndf 135 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVT----LVSQE----GRHFYGH------GVFSPDGRLLYATENDF 135 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEE----Eeccc----Cceeecc------cccCCCCcEEEeecCCC
Confidence 4567788877666776666665 56788877654321 11100 1113333 25899999999741
Q ss_pred ---CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCC-------C----------
Q 010206 362 ---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-------N---------- 421 (515)
Q Consensus 362 ---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d-------g---------- 421 (515)
.|.|-|||.+...+.+..+..|.--. ..+.+.+||+.|+.+... |
T Consensus 136 d~~rGViGvYd~r~~fqrvgE~~t~GiGp---------------Hev~lm~DGrtlvvanGGIethpdfgR~~lNldsMe 200 (366)
T COG3490 136 DPNRGVIGVYDAREGFQRVGEFSTHGIGP---------------HEVTLMADGRTLVVANGGIETHPDFGRTELNLDSME 200 (366)
T ss_pred CCCCceEEEEecccccceecccccCCcCc---------------ceeEEecCCcEEEEeCCceecccccCccccchhhcC
Confidence 28999999986556666666654321 278999999998865421 1
Q ss_pred -cEEEEecCCCCcce-eeec--cCCCceeeEEECCCCCeeEeecCCCe-----EEE---ecCCCCCccccCCc-cccccC
Q 010206 422 -LFRVFGCSEGSAES-TTLE--ASKNPMRRQVQTPSRPSRPLGSLSGV-----VRR---VKGADNSALDANGN-AFDFSM 488 (515)
Q Consensus 422 -~i~iw~~~~~~~~~-~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~-----v~l---~~~~~~~~~~~~~~-~~~~~~ 488 (515)
++.+-|..++..+. .+|. .+...++.++..+||...+-+-.-|. -.+ .++..+.-..+..+ ...+..
T Consensus 201 PSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~an 280 (366)
T COG3490 201 PSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFAN 280 (366)
T ss_pred ccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHh
Confidence 22233433332111 2333 34456777777777765544322211 001 11111110001101 112334
Q ss_pred CeeEEEEcCCCCEEEEEc--CCcEEEEeC
Q 010206 489 KLLHLAWHPSENSIACAA--SNSLYMYYA 515 (515)
Q Consensus 489 ~i~~~~~s~~~~~la~~~--~~~~~i~~~ 515 (515)
-|-+++-+-+..+++..+ .|..++|++
T Consensus 281 YigsiA~n~~~glV~lTSP~GN~~vi~da 309 (366)
T COG3490 281 YIGSIAANRRDGLVALTSPRGNRAVIWDA 309 (366)
T ss_pred hhhheeecccCCeEEEecCCCCeEEEEEc
Confidence 567777777777776555 455777764
No 362
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0033 Score=59.51 Aligned_cols=93 Identities=16% Similarity=0.173 Sum_probs=68.6
Q ss_pred cceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCC
Q 010206 343 ASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 421 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg 421 (515)
..+.-+.|+|.-.++|.+.. |.|-+..+. .+.+-++..+...+ ..+++|.|||+.||.|-.||
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v--------------~~sL~W~~DGkllaVg~kdG 84 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIPGENV--------------TASLCWRPDGKLLAVGFKDG 84 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCCCCcc--------------ceeeeecCCCCEEEEEecCC
Confidence 46888999999999999876 888888876 45555555444321 12899999999999999999
Q ss_pred cEEEEecCCCCcceeeeccCCCceeeEEEC
Q 010206 422 LFRVFGCSEGSAESTTLEASKNPMRRQVQT 451 (515)
Q Consensus 422 ~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~ 451 (515)
+|++-|..++..+...+-....++..+.|.
T Consensus 85 ~I~L~Dve~~~~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 85 TIRLHDVEKGGRLVSFLFSVETDISKGIWD 114 (665)
T ss_pred eEEEEEccCCCceeccccccccchheeecc
Confidence 999999998854433333344556666664
No 363
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.02 E-value=0.05 Score=50.18 Aligned_cols=137 Identities=12% Similarity=0.140 Sum_probs=62.3
Q ss_pred CeEEEEecCCCCEEEEe-C--------------------CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEe--
Q 010206 236 HINSISNNSDGETFISA-D--------------------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-- 292 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~-~--------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~-- 292 (515)
.-..+-|.|..+.++++ . ..++.+||+.+.+.. +.+++ ......+..|.|.
T Consensus 182 ~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~-Q~idL-----g~~g~~pLEvRflH~ 255 (461)
T PF05694_consen 182 FGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLL-QTIDL-----GEEGQMPLEVRFLHD 255 (461)
T ss_dssp ----EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEE-EEEES------TTEEEEEEEEE-SS
T ss_pred CCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEe-eEEec-----CCCCCceEEEEecCC
Confidence 34567778887777765 1 257999999876543 33322 1112335567774
Q ss_pred cCCCcEEEEEecCCeEEEEec-CcccccccccceeeeccCC-------CccccccccccceeEEEEccCCCEEEEEcC--
Q 010206 293 PTHCNMLAYSSSKGSIRLIDM-RQSALCDTHSKLFEEQEAP-------GTRSFFTEIIASISDIKFARNGRHILSRDY-- 362 (515)
Q Consensus 293 p~~~~~l~~~~~dg~i~~wd~-~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-- 362 (515)
|+...-++.+...++|..|-- ..+.-..+ ++.+.+..+ .-..-+..-..-|+.+.+|.|.++|.....
T Consensus 256 P~~~~gFvg~aLss~i~~~~k~~~g~W~a~--kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~ 333 (461)
T PF05694_consen 256 PDANYGFVGCALSSSIWRFYKDDDGEWAAE--KVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLH 333 (461)
T ss_dssp TT--EEEEEEE--EEEEEEEE-ETTEEEEE--EEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTT
T ss_pred CCccceEEEEeccceEEEEEEcCCCCeeee--EEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccC
Confidence 444233444444555554433 33332111 222221110 000111222356899999999999998764
Q ss_pred CeEEEEEeeCCCCCeeeE
Q 010206 363 MTLKLWDINMDSGPVATF 380 (515)
Q Consensus 363 ~~i~iwd~~~~~~~~~~~ 380 (515)
|.|+.||+..+.++..+-
T Consensus 334 GdvrqYDISDP~~Pkl~g 351 (461)
T PF05694_consen 334 GDVRQYDISDPFNPKLVG 351 (461)
T ss_dssp TEEEEEE-SSTTS-EEEE
T ss_pred CcEEEEecCCCCCCcEEe
Confidence 999999998755555443
No 364
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.89 E-value=0.51 Score=46.35 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=20.8
Q ss_pred CCCEEEEecCCCcEEEEecCCCCcc
Q 010206 410 DGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 410 ~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
.+..|+.++.||.|+.+|.++|+.+
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG~~l 429 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTGKEL 429 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCCcee
Confidence 4578888999999999999998433
No 365
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.88 E-value=0.002 Score=37.02 Aligned_cols=34 Identities=35% Similarity=0.536 Sum_probs=29.9
Q ss_pred cccccCCceEEEEEecCCCcEEEEEecCCeEEEEe
Q 010206 278 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 312 (515)
Q Consensus 278 ~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd 312 (515)
.+..|...|.++.|.+++ .++++++.|+.+++||
T Consensus 7 ~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 7 TLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred EEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 345678899999999988 8999999999999996
No 366
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.86 E-value=0.033 Score=55.20 Aligned_cols=145 Identities=12% Similarity=0.097 Sum_probs=80.8
Q ss_pred ceeEEEEccCCCEEEEEc-------C--CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEE
Q 010206 344 SISDIKFARNGRHILSRD-------Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 414 (515)
Q Consensus 344 ~i~~~~~s~~~~~l~s~~-------~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 414 (515)
.+.+.+++|+|+.++.-. + ..|.+++.. +.......+.. .+.-.|+|||+.|
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~~lt~g~~-----------------~t~PsWspDG~~l 411 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAVQVLEGHS-----------------LTRPSWSLDADAV 411 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--CcceeeecCCC-----------------CCCceECCCCCce
Confidence 578899999999887632 3 355555542 33222222221 1267899998877
Q ss_pred EEecCC------------CcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE---e--cCCCCCcc
Q 010206 415 ATGSYS------------NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR---V--KGADNSAL 477 (515)
Q Consensus 415 ~s~s~d------------g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l---~--~~~~~~~~ 477 (515)
++.+.. +.+.+.++..+. ... .....|..+.++|||..++... ++.|.+ . .++. ...
T Consensus 412 w~v~dg~~~~~v~~~~~~gql~~~~vd~ge-~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l 485 (591)
T PRK13616 412 WVVVDGNTVVRVIRDPATGQLARTPVDASA-VAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YAL 485 (591)
T ss_pred EEEecCcceEEEeccCCCceEEEEeccCch-hhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eee
Confidence 776532 233333443321 111 2245799999999999887765 467777 2 2222 100
Q ss_pred ccCCcc-ccccCCeeEEEEcCCCCEEEEEcCCcEEEE
Q 010206 478 DANGNA-FDFSMKLLHLAWHPSENSIACAASNSLYMY 513 (515)
Q Consensus 478 ~~~~~~-~~~~~~i~~~~~s~~~~~la~~~~~~~~i~ 513 (515)
...... .+....+.+++|.+++.+++........+|
T Consensus 486 ~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~ 522 (591)
T PRK13616 486 TNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVW 522 (591)
T ss_pred cccEEeecccCCccccceEecCCEEEEEecCCCCceE
Confidence 000001 123344689999999996644333333344
No 367
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.82 E-value=0.12 Score=45.61 Aligned_cols=147 Identities=12% Similarity=0.095 Sum_probs=87.6
Q ss_pred ceeEEEEccCCCEEEEEc--C--CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecC
Q 010206 344 SISDIKFARNGRHILSRD--Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 419 (515)
Q Consensus 344 ~i~~~~~s~~~~~l~s~~--~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~ 419 (515)
.+.+.+++++++.++.-. + ..+.++... +.....+.+.. +....|++++...+....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~~-----------------l~~PS~d~~g~~W~v~~~ 85 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGGS-----------------LTRPSWDPDGWVWTVDDG 85 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCCc-----------------cccccccCCCCEEEEEcC
Confidence 588899999999887643 3 555555443 22222222221 236789999887777776
Q ss_pred CCcEEEEe-cCCCCcceeeeccC--CCceeeEEECCCCCeeEeec---CCCeEEE----ecCCC-CCccccCCccc-ccc
Q 010206 420 SNLFRVFG-CSEGSAESTTLEAS--KNPMRRQVQTPSRPSRPLGS---LSGVVRR----VKGAD-NSALDANGNAF-DFS 487 (515)
Q Consensus 420 dg~i~iw~-~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~---~d~~v~l----~~~~~-~~~~~~~~~~~-~~~ 487 (515)
+...+++. ..++......+... ...|..+.++|||..+|... .++.+.+ .+... +.......... ...
T Consensus 86 ~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~ 165 (253)
T PF10647_consen 86 SGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLL 165 (253)
T ss_pred CCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccccc
Confidence 67777764 33332222223222 12899999999999876665 3577776 22222 11000011111 224
Q ss_pred CCeeEEEEcCCCCEEEEEcCCc
Q 010206 488 MKLLHLAWHPSENSIACAASNS 509 (515)
Q Consensus 488 ~~i~~~~~s~~~~~la~~~~~~ 509 (515)
..+.+++|.+++.+++.+...+
T Consensus 166 ~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 166 SDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred CcceeeeecCCCEEEEEeCCCC
Confidence 6889999999999888766443
No 368
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=0.098 Score=49.03 Aligned_cols=98 Identities=17% Similarity=0.215 Sum_probs=66.3
Q ss_pred CCCcEEEEeCCCCCcc-cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccC
Q 010206 253 DDLRINLWNLEISNQS-FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 331 (515)
Q Consensus 253 ~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 331 (515)
++..|.-||++-.... ......+ .+ .......|.+-..+| +++.|+.+|.||+||- .+...
T Consensus 402 s~n~vfriDpRv~~~~kl~~~q~k--qy-~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~A------------ 463 (644)
T KOG2395|consen 402 SDNSVFRIDPRVQGKNKLAVVQSK--QY-STKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRA------------ 463 (644)
T ss_pred cCCceEEecccccCcceeeeeecc--cc-ccccccceeeecCCc--eEEEeecCCcEEeehh-hhhhh------------
Confidence 8888999998854431 1111000 11 113345666666666 8999999999999996 43321
Q ss_pred CCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEee
Q 010206 332 PGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN 371 (515)
Q Consensus 332 ~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~ 371 (515)
+..+.+...+|..|..+.+|++|++..+..+-+-++.
T Consensus 464 ---KTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 464 ---KTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred ---hhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 2235556689999999999999998877788887764
No 369
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.77 E-value=0.12 Score=44.50 Aligned_cols=191 Identities=16% Similarity=0.150 Sum_probs=103.8
Q ss_pred EecCCCCEEEEe-C-----CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEE-----
Q 010206 241 SNNSDGETFISA-D-----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR----- 309 (515)
Q Consensus 241 ~~~~~~~~l~s~-~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~----- 309 (515)
.|+|||.+|.+. . -|.|-+||.+..-+.. ..+..|.-....+.+.+|| +.++.+. |-|.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrv-------gE~~t~GiGpHev~lm~DG-rtlvvan--GGIethpdf 189 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRV-------GEFSTHGIGPHEVTLMADG-RTLVVAN--GGIETHPDF 189 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEeccccccee-------cccccCCcCcceeEEecCC-cEEEEeC--Cceeccccc
Confidence 489999999886 3 3789999998443222 2556677778899999999 6666543 2233
Q ss_pred ---------------EEecCcccccccccceeeeccCCCcccccc--ccccceeEEEEccCCCEEEEEcC-Ce----EEE
Q 010206 310 ---------------LIDMRQSALCDTHSKLFEEQEAPGTRSFFT--EIIASISDIKFARNGRHILSRDY-MT----LKL 367 (515)
Q Consensus 310 ---------------~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~s~~~-~~----i~i 367 (515)
+.|-.++.++.++ ++. .+.-.|..++..+||..++.+-. |. --+
T Consensus 190 gR~~lNldsMePSlvlld~atG~liekh--------------~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppL 255 (366)
T COG3490 190 GRTELNLDSMEPSLVLLDAATGNLIEKH--------------TLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPL 255 (366)
T ss_pred CccccchhhcCccEEEEeccccchhhhc--------------cCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcc
Confidence 3333333332221 111 23346888888888887776532 21 111
Q ss_pred EEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEec-CCCcEEEEecCCCCcceeeeccCCCcee
Q 010206 368 WDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAESTTLEASKNPMR 446 (515)
Q Consensus 368 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s-~dg~i~iw~~~~~~~~~~~~~~~~~~v~ 446 (515)
--....+++++.+...+.....+. +. |-+++.+.+..+++..+ ..+...+||..++..+. +..-....
T Consensus 256 vg~~~~g~~l~~~~~pee~~~~~a-----nY---igsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~---~a~l~daa 324 (366)
T COG3490 256 VGHFRKGEPLEFLDLPEEQTAAFA-----NY---IGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVS---EAALPDAA 324 (366)
T ss_pred eeeccCCCcCcccCCCHHHHHHHH-----hh---hhheeecccCCeEEEecCCCCeEEEEEcCCCcEEe---cccccccc
Confidence 111222444444443332211111 11 22677776666655444 56678899999984321 11111111
Q ss_pred eEEECCCCCeeEeecCCCeEEE
Q 010206 447 RQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 447 ~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.++ +.+.-++..+.+|.+++
T Consensus 325 Gva--~~~~gf~vssg~G~~~~ 344 (366)
T COG3490 325 GVA--AAKGGFAVSSGQGRIIF 344 (366)
T ss_pred cce--eccCceEEecCCceEEe
Confidence 222 33344555666777776
No 370
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.74 E-value=0.42 Score=43.20 Aligned_cols=224 Identities=13% Similarity=0.068 Sum_probs=109.4
Q ss_pred EEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcc
Q 010206 239 SISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 316 (515)
Q Consensus 239 ~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~ 316 (515)
+-.|.++...|+-+ ..+.|.-|+..+++.. .+. +.+.+.++..-..+ ..|+++.. .+.++++.++
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~---------~~~-~p~~~~~~~~~d~~-g~Lv~~~~--g~~~~~~~~~ 95 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKR---------VFP-SPGGFSSGALIDAG-GRLIACEH--GVRLLDPDTG 95 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceE---------EEE-CCCCcccceeecCC-CeEEEEcc--ccEEEeccCC
Confidence 34577777766655 6899999998755432 111 23333444433333 34443333 3455666554
Q ss_pred cccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEE-c---------CCeEEEEEeeCCCCCeeeEeeeccc
Q 010206 317 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-D---------YMTLKLWDINMDSGPVATFQVHEHL 386 (515)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~---------~~~i~iwd~~~~~~~~~~~~~~~~~ 386 (515)
.............. ....+.+...|+|.+.++. . ...-.+|-+...+...+.+..+-..
T Consensus 96 ~~~t~~~~~~~~~~-----------~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~ 164 (307)
T COG3386 96 GKITLLAEPEDGLP-----------LNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTI 164 (307)
T ss_pred ceeEEeccccCCCC-----------cCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEe
Confidence 43111111111110 0346778888999888762 2 1111344444213333333322111
Q ss_pred cccccccccCCCccceeeEEEcCCCCEEEEec-CCCcEEEEecCC-CCcce-----eeeccCCCceeeEEECCCCCeeEe
Q 010206 387 RPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSE-GSAES-----TTLEASKNPMRRQVQTPSRPSRPL 459 (515)
Q Consensus 387 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s-~dg~i~iw~~~~-~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~s 459 (515)
-..++||||++.|+.+. ..+.|+-|++.. ..... ..........-.++...+|.+-++
T Consensus 165 ---------------~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~ 229 (307)
T COG3386 165 ---------------PNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVA 229 (307)
T ss_pred ---------------cCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEe
Confidence 13799999998777654 458888887762 11111 111122233335555566666544
Q ss_pred ecCCC-eEEE--ecCCCCCccccCCccccccCCeeEEEEc-CCCCEEEEEcC
Q 010206 460 GSLSG-VVRR--VKGADNSALDANGNAFDFSMKLLHLAWH-PSENSIACAAS 507 (515)
Q Consensus 460 ~~~d~-~v~l--~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~la~~~~ 507 (515)
+-.+| .|.. .++..... .. -....+++++|- |+.+.|.+.+.
T Consensus 230 a~~~g~~v~~~~pdG~l~~~--i~----lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 230 AVWGGGRVVRFNPDGKLLGE--IK----LPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred cccCCceEEEECCCCcEEEE--EE----CCCCCCccceEeCCCcCEEEEEec
Confidence 44442 3333 22221111 11 112566777775 56676665543
No 371
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.72 E-value=0.48 Score=43.59 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=20.7
Q ss_pred cCCceEEEEEecCCCcEEEEEec---CCe-EEEEecCc
Q 010206 282 LTEVITSAEFHPTHCNMLAYSSS---KGS-IRLIDMRQ 315 (515)
Q Consensus 282 ~~~~i~~i~~~p~~~~~l~~~~~---dg~-i~~wd~~~ 315 (515)
-...+.-+.|+|..+.+|+.|.. +.. -|+|-+++
T Consensus 186 ~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~ 223 (386)
T PF14583_consen 186 DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT 223 (386)
T ss_dssp ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET
T ss_pred cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc
Confidence 35567788999998777777655 221 35665544
No 372
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.71 E-value=0.0057 Score=37.03 Aligned_cols=30 Identities=20% Similarity=0.671 Sum_probs=26.7
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEcc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQ 144 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~ 144 (515)
..|..++|||..| +++.++.||.|.++++.
T Consensus 12 ~~v~~~~w~P~md--LiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSWCPTMD--LIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEECCCCC--EEEEEECCCeEEEEECC
Confidence 6799999988766 99999999999999984
No 373
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.64 E-value=0.55 Score=43.27 Aligned_cols=144 Identities=12% Similarity=0.076 Sum_probs=83.6
Q ss_pred cEEEEEec---------C-CeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEE
Q 010206 297 NMLAYSSS---------K-GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLK 366 (515)
Q Consensus 297 ~~l~~~~~---------d-g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~ 366 (515)
.+|+.|+. . |.|.+|++..........+.... ....++|++++-- ++ .|+++..+.|.
T Consensus 43 ~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~----------~~~~g~V~ai~~~-~~-~lv~~~g~~l~ 110 (321)
T PF03178_consen 43 EYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS----------TEVKGPVTAICSF-NG-RLVVAVGNKLY 110 (321)
T ss_dssp EEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE----------EEESS-EEEEEEE-TT-EEEEEETTEEE
T ss_pred CEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE----------EeecCcceEhhhh-CC-EEEEeecCEEE
Confidence 67777764 2 88999999874100000111111 1233678888766 44 46666668999
Q ss_pred EEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeec--cCCCc
Q 010206 367 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE--ASKNP 444 (515)
Q Consensus 367 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~--~~~~~ 444 (515)
+|++.. .+.+.......... -++++. ..+++|+.|.....+.++...........+. .....
T Consensus 111 v~~l~~-~~~l~~~~~~~~~~-------------~i~sl~--~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~ 174 (321)
T PF03178_consen 111 VYDLDN-SKTLLKKAFYDSPF-------------YITSLS--VFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRW 174 (321)
T ss_dssp EEEEET-TSSEEEEEEE-BSS-------------SEEEEE--EETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BE
T ss_pred EEEccC-cccchhhheecceE-------------EEEEEe--ccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCcc
Confidence 999996 44222222222111 023443 3466999999888888876554322222222 23445
Q ss_pred eeeEEECCCCCeeEeecCCCeEEE
Q 010206 445 MRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 445 v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+.++.+-+++..++.++.+|.+.+
T Consensus 175 v~~~~~l~d~~~~i~~D~~gnl~~ 198 (321)
T PF03178_consen 175 VTAAEFLVDEDTIIVGDKDGNLFV 198 (321)
T ss_dssp EEEEEEE-SSSEEEEEETTSEEEE
T ss_pred EEEEEEecCCcEEEEEcCCCeEEE
Confidence 777778766679999999999988
No 374
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.60 E-value=0.29 Score=48.79 Aligned_cols=201 Identities=13% Similarity=0.134 Sum_probs=102.6
Q ss_pred CCeEEEEecCCCCEEEEeC-------CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC-C
Q 010206 235 YHINSISNNSDGETFISAD-------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-G 306 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~~-------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-g 306 (515)
..+.+.+++|+++.++... |..-.||-...+.....+ ..+ .....-.|+|+| ..+.+.... .
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l-------t~g--~~~t~PsWspDG-~~lw~v~dg~~ 419 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV-------LEG--HSLTRPSWSLDA-DAVWVVVDGNT 419 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee-------ecC--CCCCCceECCCC-CceEEEecCcc
Confidence 4677889999999987642 433344433222222111 111 236778899997 666655433 2
Q ss_pred eEEEEecCc-ccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeC--CCCCeeeEeee
Q 010206 307 SIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM--DSGPVATFQVH 383 (515)
Q Consensus 307 ~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~--~~~~~~~~~~~ 383 (515)
.+++.+-.. +++ .......... . ......|..+.|||||..++.-.+++|.+=-+.. .+. ..+...
T Consensus 420 ~~~v~~~~~~gql-----~~~~vd~ge~-~---~~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~--~~l~~~ 488 (591)
T PRK13616 420 VVRVIRDPATGQL-----ARTPVDASAV-A---SRVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ--YALTNP 488 (591)
T ss_pred eEEEeccCCCceE-----EEEeccCchh-h---hccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc--eeeccc
Confidence 233332211 111 1011100000 0 0122579999999999999876567777633322 122 222111
Q ss_pred ccccccccccccCCCccc-eeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccC--CCceeeEEECCCCCeeEee
Q 010206 384 EHLRPKLCDLYENDSIFD-KFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS--KNPMRRQVQTPSRPSRPLG 460 (515)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~ 460 (515)
.... ..+.+ +.++.|..++.++ .+..++...+|.+.-.+.....+... ..++.+++-.++ .+...
T Consensus 489 ~~l~---------~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~ 556 (591)
T PRK13616 489 REVG---------PGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVT 556 (591)
T ss_pred EEee---------cccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEE
Confidence 0000 00001 2378999999865 44544544555554333332222332 566777777764 45556
Q ss_pred cCCCeEEE
Q 010206 461 SLSGVVRR 468 (515)
Q Consensus 461 ~~d~~v~l 468 (515)
..++.+.+
T Consensus 557 ~~~g~~~l 564 (591)
T PRK13616 557 DARAVLQL 564 (591)
T ss_pred cCCceEEe
Confidence 77787777
No 375
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.45 E-value=0.48 Score=40.34 Aligned_cols=70 Identities=13% Similarity=0.144 Sum_probs=46.5
Q ss_pred CCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEEEeecCCC
Q 010206 47 GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS 126 (515)
Q Consensus 47 g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~ 126 (515)
|++++.|...|.+++-+..++.+. +. +..- +.|-+-+-+ ..++
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~-------------------w~----f~~~-------------~~vk~~a~~-d~~~ 105 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQI-------------------WN----FVIL-------------ETVKVRAQC-DFDG 105 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhhe-------------------ee----eeeh-------------hhhccceEE-cCCC
Confidence 567888889999999888887642 00 1110 122222222 3457
Q ss_pred cEEEeeeCCCeEEEEEccCCeeEEEee
Q 010206 127 ALYLLSTNDKTIKLWKVQEKKVKKVFD 153 (515)
Q Consensus 127 ~~l~~~~~d~~i~iwd~~~~~~~~~~~ 153 (515)
..+..++.|++....|.++.......+
T Consensus 106 glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 106 GLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred ceEEEecCCCcEEEecccccceEEecc
Confidence 799999999999999999877665543
No 376
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.41 E-value=0.24 Score=36.38 Aligned_cols=101 Identities=15% Similarity=0.200 Sum_probs=58.7
Q ss_pred eeEEEEcc---CC-CEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecC
Q 010206 345 ISDIKFAR---NG-RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 419 (515)
Q Consensus 345 i~~~~~s~---~~-~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~ 419 (515)
|+++++.. || ..|++|++ ..|++|+- ...+..+..... +++++-... ..++.+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~---~e~~~Ei~e~~~----------------v~~L~~~~~-~~F~Y~l~ 61 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG---DEIVAEITETDK----------------VTSLCSLGG-GRFAYALA 61 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC---CcEEEEEecccc----------------eEEEEEcCC-CEEEEEec
Confidence 45555554 33 46666665 99999985 345555544432 235555544 56888889
Q ss_pred CCcEEEEecCCCCcceeeeccCCCceeeEEECCCC---CeeEeecCCCeEEE
Q 010206 420 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR---PSRPLGSLSGVVRR 468 (515)
Q Consensus 420 dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~s~~~d~~v~l 468 (515)
+|+|-+|+.... +...+....++.-..+..++ +-|++|-.+|.|.+
T Consensus 62 NGTVGvY~~~~R---lWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 62 NGTVGVYDRSQR---LWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred CCEEEEEeCcce---eeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 999999886533 23333333333333343332 35777777776653
No 377
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.20 E-value=1 Score=41.53 Aligned_cols=166 Identities=15% Similarity=0.133 Sum_probs=67.7
Q ss_pred cCCeEEEEecCCCCEEE-Ee-C---CCc-EEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEe----
Q 010206 234 DYHINSISNNSDGETFI-SA-D---DLR-INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---- 303 (515)
Q Consensus 234 ~~~v~~~~~~~~~~~l~-s~-~---d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~---- 303 (515)
...+.-+.|+|....++ -| . +.. -++|-+++.......+ .+ ..-...+.-=-|.|||..+...+.
T Consensus 187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v--~~---~~~~e~~gHEfw~~DG~~i~y~~~~~~~ 261 (386)
T PF14583_consen 187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKV--HR---RMEGESVGHEFWVPDGSTIWYDSYTPGG 261 (386)
T ss_dssp SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EES--S------TTEEEEEEEE-TTSS-EEEEEEETTT
T ss_pred CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceee--ec---CCCCcccccccccCCCCEEEEEeecCCC
Confidence 45567788898655444 45 2 432 3677666544332211 10 111233344458899844444333
Q ss_pred cCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEE-EcC--C--------------eEE
Q 010206 304 SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-RDY--M--------------TLK 366 (515)
Q Consensus 304 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s-~~~--~--------------~i~ 366 (515)
.+..|.-+|+.+++.. ...+. ....-+-.++||++++. |++ . -|.
T Consensus 262 ~~~~i~~~d~~t~~~~----~~~~~--------------p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~ 323 (386)
T PF14583_consen 262 QDFWIAGYDPDTGERR----RLMEM--------------PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIY 323 (386)
T ss_dssp --EEEEEE-TTT--EE----EEEEE---------------SEEEEEE-TTSSEEEEEE-------------------EEE
T ss_pred CceEEEeeCCCCCCce----EEEeC--------------CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEE
Confidence 2345666777765421 01111 12334555689988876 443 1 344
Q ss_pred EEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEE-EecCCCcEEEEec
Q 010206 367 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGC 428 (515)
Q Consensus 367 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~s~dg~i~iw~~ 428 (515)
++++. ......+..|......+.--..... --..|+|||++|+ +....|...||=+
T Consensus 324 ~~~~~--~~~~~~l~~h~~sw~v~~~~~q~~h----Php~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 324 LFDVE--AGRFRKLARHDTSWKVLDGDRQVTH----PHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEETT--TTEEEEEEE-------BTTBSSTT--------EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred Eeccc--cCceeeeeeccCcceeecCCCccCC----CCCccCCCCCEEEEECCCCCCccEEEE
Confidence 55554 2233334444321110000000000 1579999999866 4456777666643
No 378
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.03 E-value=0.93 Score=39.61 Aligned_cols=205 Identities=10% Similarity=0.109 Sum_probs=108.3
Q ss_pred CCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-C
Q 010206 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D 253 (515)
Q Consensus 175 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~ 253 (515)
+++.|+|+.+.| ++......--++= +.+ +...+......-...-.+.+..++++.++- .
T Consensus 89 S~LTynp~~rtL------------Fav~n~p~~iVEl----t~~----GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER 148 (316)
T COG3204 89 SSLTYNPDTRTL------------FAVTNKPAAIVEL----TKE----GDLIRTIPLTGFSDPETIEYIGGNQFVIVDER 148 (316)
T ss_pred cceeeCCCcceE------------EEecCCCceEEEE----ecC----CceEEEecccccCChhHeEEecCCEEEEEehh
Confidence 389999999988 5555444443321 111 222222211112334567777778777776 6
Q ss_pred CCcEEEEeCCCCCcccceec--ccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccC
Q 010206 254 DLRINLWNLEISNQSFNIVD--VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 331 (515)
Q Consensus 254 d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 331 (515)
++.+.++.+........... ++.......+...-.++|.|.+ ..|..+-...=+.||.+..... .+..+..
T Consensus 149 ~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~------~l~~~~~ 221 (316)
T COG3204 149 DRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPS------SLSVHAS 221 (316)
T ss_pred cceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCc------ccccccc
Confidence 99999988775543322211 1111222225567899999998 6777777777777777653321 0111100
Q ss_pred CCccccccccccceeEEEEcc-CCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcC
Q 010206 332 PGTRSFFTEIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 409 (515)
Q Consensus 332 ~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 409 (515)
..+.....---..|.++.|++ .+.+|+-+.+ +.+.-.|.. +.++..+..+.+...-..++. ..-.++..+
T Consensus 222 ~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~--G~~~~~lsL~~g~~gL~~dip------qaEGiamDd 293 (316)
T COG3204 222 LDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS--GEVIELLSLTKGNHGLSSDIP------QAEGIAMDD 293 (316)
T ss_pred cCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC--CCeeeeEEeccCCCCCcccCC------CcceeEECC
Confidence 000000000113578888987 4555555655 777777765 666666665554322111111 112567776
Q ss_pred CCCEE
Q 010206 410 DGGRV 414 (515)
Q Consensus 410 ~~~~l 414 (515)
+|.+.
T Consensus 294 ~g~lY 298 (316)
T COG3204 294 DGNLY 298 (316)
T ss_pred CCCEE
Confidence 66643
No 379
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.87 E-value=0.058 Score=54.89 Aligned_cols=102 Identities=14% Similarity=0.237 Sum_probs=71.9
Q ss_pred cEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCC
Q 010206 297 NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSG 375 (515)
Q Consensus 297 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~ 375 (515)
..++.|+..|.+-..|+... +.. ...+ ..-.++|++++|+.+|+.++.|- +|.|.+||+.. ++
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~n-L~~----~~~n----------e~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k 163 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGN-LGP----LHQN----------ERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AK 163 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcc-cch----hhcC----------CccCCcceeeEecCCCceeccccCCCcEEEEEccC-Cc
Confidence 57888999999998887653 210 0000 01126899999999999999985 49999999996 78
Q ss_pred CeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEec
Q 010206 376 PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 428 (515)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~ 428 (515)
+++.+..+..... .+..+.+..++..+.++...|. +|.+
T Consensus 164 ~l~~i~e~~ap~t------------~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 164 ILKVITEHGAPVT------------GVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ceeeeeecCCccc------------eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 8888877664422 2345666667777888877776 5554
No 380
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.73 E-value=0.14 Score=49.23 Aligned_cols=100 Identities=12% Similarity=0.170 Sum_probs=62.9
Q ss_pred ceeEEEEccCCCEEEEE-----cC-CeEEEEEeeCCCCCeee-EeeeccccccccccccCCCccceeeEEEcCCCCEEEE
Q 010206 344 SISDIKFARNGRHILSR-----DY-MTLKLWDINMDSGPVAT-FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT 416 (515)
Q Consensus 344 ~i~~~~~s~~~~~l~s~-----~~-~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 416 (515)
.+....+||+|++++.+ ++ ..|+++|+.+ ++.+.. +..... ..+.|.+|++.|+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t-g~~l~d~i~~~~~-----------------~~~~W~~d~~~~~y 186 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLET-GKFLPDGIENPKF-----------------SSVSWSDDGKGFFY 186 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTT-TEEEEEEEEEEES-----------------EEEEECTTSSEEEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCC-CcCcCCccccccc-----------------ceEEEeCCCCEEEE
Confidence 35578899999999853 44 6799999987 544332 222211 14999999988765
Q ss_pred ecCC-----------CcEEEEecCCCCcc-eeeeccCCCc--eeeEEECCCCCeeEeec
Q 010206 417 GSYS-----------NLFRVFGCSEGSAE-STTLEASKNP--MRRQVQTPSRPSRPLGS 461 (515)
Q Consensus 417 ~s~d-----------g~i~iw~~~~~~~~-~~~~~~~~~~--v~~~~~~~~~~~l~s~~ 461 (515)
...+ ..|+.|++.+.... ...++....+ ...+..++++++++..+
T Consensus 187 ~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~ 245 (414)
T PF02897_consen 187 TRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISS 245 (414)
T ss_dssp EECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEE
T ss_pred EEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEE
Confidence 5432 34788888876433 2344544443 45778899999876443
No 381
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.55 E-value=0.74 Score=45.64 Aligned_cols=116 Identities=10% Similarity=0.132 Sum_probs=69.9
Q ss_pred eEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEe--cCCCcEEEEEecCCeEEEEec
Q 010206 237 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH--PTHCNMLAYSSSKGSIRLIDM 313 (515)
Q Consensus 237 v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~--p~~~~~l~~~~~dg~i~~wd~ 313 (515)
+.-+.-+.-++.-++- +..++.|||.+.....++. .+ ...+.|..+.|. |++ +.+++-+..+.|.+|--
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~------~f-~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEE------SF-SEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQ 103 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEee------ee-cCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEc
Confidence 3334444444443344 5778999999876543321 22 347789999985 677 67777888888988864
Q ss_pred Cccc-----ccccccceeeeccCCCccccccccc-cceeEEEEccCCCEEEEEcCCeEEEEEee
Q 010206 314 RQSA-----LCDTHSKLFEEQEAPGTRSFFTEII-ASISDIKFARNGRHILSRDYMTLKLWDIN 371 (515)
Q Consensus 314 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~s~~~~~i~iwd~~ 371 (515)
.... .....++.++ +..|+ .+|.+..|.++|.++++ +.+.+.|+|-.
T Consensus 104 ~R~dy~~~~p~w~~i~~i~----------i~~~T~h~Igds~Wl~~G~LvV~-sGNqlfv~dk~ 156 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKID----------ISSHTPHPIGDSIWLKDGTLVVG-SGNQLFVFDKW 156 (631)
T ss_pred cchhhhcCCcccceeEEEE----------eecCCCCCccceeEecCCeEEEE-eCCEEEEECCC
Confidence 2211 1111112222 22233 57899999999866554 44588888754
No 382
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.44 E-value=0.43 Score=47.20 Aligned_cols=73 Identities=11% Similarity=0.200 Sum_probs=51.2
Q ss_pred ceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeE
Q 010206 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (515)
Q Consensus 37 ~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 116 (515)
..+-+.-|.-++.-++-+....+.|||...+... +...|.. .+.|.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE---------------------~~~~f~~-------------~~~I~ 76 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLE---------------------YEESFSE-------------DDPIR 76 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEE---------------------EeeeecC-------------CCcee
Confidence 3444555555555555445568999998766532 2233322 27799
Q ss_pred EEEEeecCCCcEEEeeeCCCeEEEEEc
Q 010206 117 KIRWCQSANSALYLLSTNDKTIKLWKV 143 (515)
Q Consensus 117 ~l~~~~~~~~~~l~~~~~d~~i~iwd~ 143 (515)
++.|...++++.+++.+..+.|.+|.-
T Consensus 77 dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 77 DLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred eceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 999999999999999999999999864
No 383
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.43 E-value=0.05 Score=55.33 Aligned_cols=98 Identities=13% Similarity=0.101 Sum_probs=68.7
Q ss_pred CCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCC
Q 010206 353 NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 353 ~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
.+-.++.|++ |.+-..|+..+-.+ .|.+. ....+|++++|+.+|..++.|-.+|.|.+||+..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~-----~~~ne----------~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGP-----LHQNE----------RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccch-----hhcCC----------ccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence 3557778877 88888888742111 12111 11234779999999999999999999999999987
Q ss_pred CcceeeeccCCCceeeEEE---CCCCCeeEeecCCCeE
Q 010206 432 SAESTTLEASKNPMRRQVQ---TPSRPSRPLGSLSGVV 466 (515)
Q Consensus 432 ~~~~~~~~~~~~~v~~~~~---~~~~~~l~s~~~d~~v 466 (515)
...+.+..|..|...+.+ ..++..++++..-|.+
T Consensus 163 -k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gsf 199 (1206)
T KOG2079|consen 163 -KILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGSF 199 (1206)
T ss_pred -cceeeeeecCCccceEEEEEEeCCCcEEEEccCCCce
Confidence 555777777777766654 3455567777777743
No 384
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.36 E-value=0.024 Score=56.37 Aligned_cols=98 Identities=13% Similarity=0.107 Sum_probs=60.3
Q ss_pred ccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC---CCCEEEEe-CCCcEEEEeCCCCCcccceecccCcccc
Q 010206 205 SSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS---DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME 280 (515)
Q Consensus 205 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 280 (515)
|.+-+|+ +.-.++.................+.-+.|.| +..++..+ ++++|++..+++.... -+.
T Consensus 153 g~lfVy~--vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~---------l~r 221 (1283)
T KOG1916|consen 153 GELFVYD--VDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRS---------LFR 221 (1283)
T ss_pred hhhheee--hHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHH---------HHH
Confidence 5677888 4444444333333332233334445566655 56667777 7899998887654331 223
Q ss_pred ccCCceEEE-----------EEecCCCcEEEEEecCCeEEEEecC
Q 010206 281 DLTEVITSA-----------EFHPTHCNMLAYSSSKGSIRLIDMR 314 (515)
Q Consensus 281 ~~~~~i~~i-----------~~~p~~~~~l~~~~~dg~i~~wd~~ 314 (515)
+|...+..+ ..+||| ..|++.+.||.+++|.+.
T Consensus 222 sHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 222 SHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred hcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecCCccceeeee
Confidence 354444332 268999 899999999999999874
No 385
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.32 E-value=1.3 Score=41.79 Aligned_cols=144 Identities=14% Similarity=0.160 Sum_probs=90.2
Q ss_pred eeEEEEccCCCEEEEEc--CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecC---
Q 010206 345 ISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY--- 419 (515)
Q Consensus 345 i~~~~~s~~~~~l~s~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~--- 419 (515)
-..+++++.+..++... ++.|.+.|... .+........... ..++++++++.+..+..
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~-~~~~~~~~vG~~P----------------~~~~~~~~~~~vYV~n~~~~ 138 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTAT-NTVLGSIPVGLGP----------------VGLAVDPDGKYVYVANAGNG 138 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcc-cceeeEeeeccCC----------------ceEEECCCCCEEEEEecccC
Confidence 45678888888666543 48999999775 4444443322211 27999999987776554
Q ss_pred CCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeec-CCCeEEEecCCCCCcc-ccCCccccccCCeeEEEEcC
Q 010206 420 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGS-LSGVVRRVKGADNSAL-DANGNAFDFSMKLLHLAWHP 497 (515)
Q Consensus 420 dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~v~l~~~~~~~~~-~~~~~~~~~~~~i~~~~~s~ 497 (515)
++.+.+.|-.+.+ +..+...-..| ..+++.|++..+.... .++.+.+++....... ............-..++++|
T Consensus 139 ~~~vsvid~~t~~-~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~ 216 (381)
T COG3391 139 NNTVSVIDAATNK-VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDP 216 (381)
T ss_pred CceEEEEeCCCCe-EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECC
Confidence 6888898888764 33444444445 8999999999655554 6777777442222100 00000122234457899999
Q ss_pred CCCEEEEEcC
Q 010206 498 SENSIACAAS 507 (515)
Q Consensus 498 ~~~~la~~~~ 507 (515)
+|+++.+...
T Consensus 217 ~g~~~yV~~~ 226 (381)
T COG3391 217 DGNRVYVAND 226 (381)
T ss_pred CCCEEEEEec
Confidence 9997776553
No 386
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.20 E-value=0.076 Score=44.13 Aligned_cols=143 Identities=10% Similarity=-0.004 Sum_probs=78.1
Q ss_pred EEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceee
Q 010206 248 TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 327 (515)
Q Consensus 248 ~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 327 (515)
++++.+|+.|+-++++..+...+ ...-+... .. -+....-+++|+.+|.|.+|......... ..+.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~r-------se~~~~e~-~~---v~~~~~~~~vG~~dg~v~~~n~n~~g~~~---d~~~ 98 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCR-------SERFIDEG-QR---VVTASAKLMVGTSDGAVYVFNWNLEGAHS---DRVC 98 (238)
T ss_pred hccccCCcccccchhhhhhhhhh-------hhhhhhcc-ee---ecccCceEEeecccceEEEecCCccchHH---Hhhh
Confidence 44555788888888775443221 11112222 11 11222678999999999999876221100 0000
Q ss_pred eccCCCccccccccccceeEEEE-ccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeE
Q 010206 328 EQEAPGTRSFFTEIIASISDIKF-ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 405 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~-s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 405 (515)
.....|.++.- -.++.+..++. +|.|+.|++.. .+.+.....|.... ....
T Consensus 99 ------------s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p-~k~~g~~g~h~~~~--------------~e~~ 151 (238)
T KOG2444|consen 99 ------------SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP-NKVLGYVGQHNFES--------------GEEL 151 (238)
T ss_pred ------------cccccceeccccccccceeEEeccCCceeeecccc-CceeeeeccccCCC--------------ccee
Confidence 00122322221 22444555554 59999999984 66665555554210 1244
Q ss_pred EEcCCCCEEEEe--cCCCcEEEEecCCC
Q 010206 406 CLSGDGGRVATG--SYSNLFRVFGCSEG 431 (515)
Q Consensus 406 ~~s~~~~~l~s~--s~dg~i~iw~~~~~ 431 (515)
..+..+++|+.. |.|..++.|++..-
T Consensus 152 ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 152 IVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred EEecCCceEEeeccccchhhhhcchhhh
Confidence 555566777777 78888888888743
No 387
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.17 E-value=3.2 Score=39.90 Aligned_cols=195 Identities=12% Similarity=0.101 Sum_probs=97.1
Q ss_pred CeEEEEecCCCCEEEEe-C-CC----cEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCC---
Q 010206 236 HINSISNNSDGETFISA-D-DL----RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG--- 306 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~-~-d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg--- 306 (515)
.+..+.++|++++++.+ + .| .++++|+++++..... +.. .....+.|.+++ +.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-------i~~--~~~~~~~W~~d~-~~~~y~~~~~~~~ 194 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-------IEN--PKFSSVSWSDDG-KGFFYTRFDEDQR 194 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-------EEE--EESEEEEECTTS-SEEEEEECSTTTS
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-------ccc--cccceEEEeCCC-CEEEEEEeCcccc
Confidence 34467899999999976 2 33 5999999987543221 111 112249999998 5555544332
Q ss_pred --------eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEE--c--C-CeEEEEEeeCC
Q 010206 307 --------SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--D--Y-MTLKLWDINMD 373 (515)
Q Consensus 307 --------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~--~--~-~~i~iwd~~~~ 373 (515)
.|..|.+.+...-. ...|+..... .....+..++|+++|+.. + . ..+.+.|+...
T Consensus 195 ~~~~~~~~~v~~~~~gt~~~~d--~lvfe~~~~~----------~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 195 TSDSGYPRQVYRHKLGTPQSED--ELVFEEPDEP----------FWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp S-CCGCCEEEEEEETTS-GGG---EEEEC-TTCT----------TSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred cccCCCCcEEEEEECCCChHhC--eeEEeecCCC----------cEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 36667766543211 1233332211 125678889999998863 2 2 45777777642
Q ss_pred ---CCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEE-Ee--cCCCcEEEEecCCCCc--ceeeeccCCC--
Q 010206 374 ---SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA-TG--SYSNLFRVFGCSEGSA--ESTTLEASKN-- 443 (515)
Q Consensus 374 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~--s~dg~i~iw~~~~~~~--~~~~~~~~~~-- 443 (515)
......+....... ...+... .+.+++ |. ...+.|.-.++..... -...+..+..
T Consensus 263 ~~~~~~~~~l~~~~~~~--------------~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~ 327 (414)
T PF02897_consen 263 GSPDAKPKLLSPREDGV--------------EYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDV 327 (414)
T ss_dssp TTSS-SEEEEEESSSS---------------EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSE
T ss_pred CCCcCCcEEEeCCCCce--------------EEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCce
Confidence 12333333222110 0122222 333433 32 2346777777776542 1124444444
Q ss_pred ceeeEEECCCCCeeEeecCCCeEEE
Q 010206 444 PMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 444 ~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.+..+... .+.+++....++.-+|
T Consensus 328 ~l~~~~~~-~~~Lvl~~~~~~~~~l 351 (414)
T PF02897_consen 328 SLEDVSLF-KDYLVLSYRENGSSRL 351 (414)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEE
T ss_pred eEEEEEEE-CCEEEEEEEECCccEE
Confidence 33333332 2234555566666555
No 388
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.10 E-value=1.8 Score=36.52 Aligned_cols=144 Identities=12% Similarity=0.156 Sum_probs=81.8
Q ss_pred cCCeEEEEecCCCCEEEEe-CC---------CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEe
Q 010206 234 DYHINSISNNSDGETFISA-DD---------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS 303 (515)
Q Consensus 234 ~~~v~~~~~~~~~~~l~s~-~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~ 303 (515)
..+.+.-..+|+|++++.. .| |.++.|-+. .+.. .+...-.--+.++|+.+...+.+.-+
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~--------~i~~~v~IsNgl~Wd~d~K~fY~iDs 177 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVE--------LIWNCVGISNGLAWDSDAKKFYYIDS 177 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCce--------eeehhccCCccccccccCcEEEEEcc
Confidence 4556677789999996643 22 344444432 1111 11111223357889888745555666
Q ss_pred cCCeEEEEe--cCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeE
Q 010206 304 SKGSIRLID--MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATF 380 (515)
Q Consensus 304 ~dg~i~~wd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~ 380 (515)
.+-.|.-|| ..+|.+..+ -..++..+... +. + -.--.++..-+|.+.++.- .++|...|..+ ++.+.++
T Consensus 178 ln~~V~a~dyd~~tG~~snr-~~i~dlrk~~~----~e-~-~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~t-GK~L~ei 249 (310)
T KOG4499|consen 178 LNYEVDAYDYDCPTGDLSNR-KVIFDLRKSQP----FE-S-LEPDGMTIDTEGNLYVATFNGGTVQKVDPTT-GKILLEI 249 (310)
T ss_pred CceEEeeeecCCCcccccCc-ceeEEeccCCC----cC-C-CCCCcceEccCCcEEEEEecCcEEEEECCCC-CcEEEEE
Confidence 678887787 666654322 12222222100 00 0 0122344455777777654 48999999997 8999888
Q ss_pred eeeccccccccccccCCCccceeeEEEcCC
Q 010206 381 QVHEHLRPKLCDLYENDSIFDKFECCLSGD 410 (515)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 410 (515)
..+... ++++||-..
T Consensus 250 klPt~q---------------itsccFgGk 264 (310)
T KOG4499|consen 250 KLPTPQ---------------ITSCCFGGK 264 (310)
T ss_pred EcCCCc---------------eEEEEecCC
Confidence 876533 568998643
No 389
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.03 E-value=2.3 Score=37.49 Aligned_cols=154 Identities=11% Similarity=0.108 Sum_probs=86.6
Q ss_pred CeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEe-
Q 010206 236 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID- 312 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd- 312 (515)
.+.+.+++++++.++.. .++.-.+|-.......... + ....+....|++++ .+.+....+...+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~-------~--~g~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~ 94 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV-------L--TGGSLTRPSWDPDG-WVWTVDDGSGGVRVVRD 94 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee-------c--cCCccccccccCCC-CEEEEEcCCCceEEEEe
Confidence 67889999999988764 2444444444433332211 1 22367788899997 6777666666666664
Q ss_pred cCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc----CCeEEEEEeeCCCCC-eeeEeeecccc
Q 010206 313 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----YMTLKLWDINMDSGP-VATFQVHEHLR 387 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~----~~~i~iwd~~~~~~~-~~~~~~~~~~~ 387 (515)
...+..... ..+.. .-...|..+.+||||..++.-. ++.|.+--+.....- ...+.......
T Consensus 95 ~~~g~~~~~---~v~~~----------~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~ 161 (253)
T PF10647_consen 95 SASGTGEPV---EVDWP----------GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVA 161 (253)
T ss_pred cCCCcceeE---Eeccc----------ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEec
Confidence 333322110 01110 0012799999999999888632 478888776542222 11111111000
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEecCC
Q 010206 388 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 420 (515)
Q Consensus 388 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d 420 (515)
......+.++.|.+++.+++.+...
T Consensus 162 --------~~~~~~v~~v~W~~~~~L~V~~~~~ 186 (253)
T PF10647_consen 162 --------PPLLSDVTDVAWSDDSTLVVLGRSA 186 (253)
T ss_pred --------ccccCcceeeeecCCCEEEEEeCCC
Confidence 0111235689999999987766543
No 390
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=95.01 E-value=5.4 Score=41.73 Aligned_cols=75 Identities=15% Similarity=0.119 Sum_probs=50.9
Q ss_pred CCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecC
Q 010206 235 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 314 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~ 314 (515)
..-..+.|.++.+.|+.++-..+.++|+++......+ ........|..+.-+|..+.+++.-+ ...|...|+.
T Consensus 204 s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l------~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~ 276 (765)
T PF10214_consen 204 SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYL------VTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVK 276 (765)
T ss_pred CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchh------ccCCChhheeeEEecCCccceEEEEe-cCeEEEEEcc
Confidence 4456788999988999998888999999876543212 12234577899998887433333333 3577777877
Q ss_pred cc
Q 010206 315 QS 316 (515)
Q Consensus 315 ~~ 316 (515)
..
T Consensus 277 ~~ 278 (765)
T PF10214_consen 277 SS 278 (765)
T ss_pred CC
Confidence 63
No 391
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.00 E-value=0.11 Score=30.49 Aligned_cols=33 Identities=21% Similarity=0.598 Sum_probs=27.5
Q ss_pred CceEEEEEecCCC--cEEEEEecCCeEEEEecCcc
Q 010206 284 EVITSAEFHPTHC--NMLAYSSSKGSIRLIDMRQS 316 (515)
Q Consensus 284 ~~i~~i~~~p~~~--~~l~~~~~dg~i~~wd~~~~ 316 (515)
+.+++++|+|... .+|+.+-..|.|.++|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4689999998663 58888888999999999963
No 392
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.94 E-value=0.15 Score=29.93 Aligned_cols=29 Identities=14% Similarity=0.180 Sum_probs=24.0
Q ss_pred ceeEEEEccC-C--CEEEEEcC-CeEEEEEeeC
Q 010206 344 SISDIKFARN-G--RHILSRDY-MTLKLWDINM 372 (515)
Q Consensus 344 ~i~~~~~s~~-~--~~l~s~~~-~~i~iwd~~~ 372 (515)
.++++.|||. + .+|+-..+ +.|.|+|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 5899999984 3 57877777 9999999984
No 393
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.90 E-value=2.5 Score=42.52 Aligned_cols=74 Identities=7% Similarity=0.156 Sum_probs=50.1
Q ss_pred CCeEEEEec--CCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCC--Cc---EEEEEecCC
Q 010206 235 YHINSISNN--SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH--CN---MLAYSSSKG 306 (515)
Q Consensus 235 ~~v~~~~~~--~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~--~~---~l~~~~~dg 306 (515)
..+++++++ ...++||++ ....|.||-.......... .....+...|.+|.|-++. +. .+++++-.|
T Consensus 164 ~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~-----~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G 238 (717)
T PF08728_consen 164 ASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYH-----VPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISG 238 (717)
T ss_pred CceeEEEEEecCcceEEEEecCCceEEEEEEecccccccc-----ccccccccCCCeeEeecCCCCCccceEEEEEeccC
Confidence 478889988 788888888 6777777755432211110 0112366779999997754 12 778889999
Q ss_pred eEEEEec
Q 010206 307 SIRLIDM 313 (515)
Q Consensus 307 ~i~~wd~ 313 (515)
.+.+|++
T Consensus 239 ~v~~~~I 245 (717)
T PF08728_consen 239 EVWTFKI 245 (717)
T ss_pred cEEEEEE
Confidence 9998887
No 394
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.88 E-value=4 Score=39.55 Aligned_cols=154 Identities=15% Similarity=0.206 Sum_probs=77.4
Q ss_pred ceeEEEEEeec--CCCcEEEeeeCCCeEEEEEccCC-----eeE--EEeeccCCcccCCCCCCccCCCCcCCCceeecCC
Q 010206 113 EKINKIRWCQS--ANSALYLLSTNDKTIKLWKVQEK-----KVK--KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (515)
Q Consensus 113 ~~v~~l~~~~~--~~~~~l~~~~~d~~i~iwd~~~~-----~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g 183 (515)
+.|..+.|.|- .+...|++....+.|.+|.+... +.. +..+... +.. ..+....|.|..
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e-~~p-----------vLpQGCVWHPk~ 124 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIRE-PFP-----------VLPQGCVWHPKK 124 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccC-Ccc-----------cCCCcccccCCC
Confidence 56999999873 22336777788899999998622 211 1111111 000 111245667766
Q ss_pred CccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEe
Q 010206 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWN 261 (515)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd 261 (515)
..|.++. ....--++++ .... ...+. --...+.|.|.+|.+||+.|+.+ +.-.-++||
T Consensus 125 ~iL~VLT------------~~dvSV~~sV--~~d~-----srVka-Di~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 125 AILTVLT------------ARDVSVLPSV--HCDS-----SRVKA-DIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWD 184 (671)
T ss_pred ceEEEEe------------cCceeEeeee--eeCC-----ceEEE-eccCCceEEEEEecCcCCEEEEEeCCeEEEEEec
Confidence 6663321 1111111221 0000 01111 12345789999999999999988 344567787
Q ss_pred CCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEec
Q 010206 262 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS 304 (515)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~ 304 (515)
-... ...-..+. ....-.+.|.++.-.-+ ..+|.+..
T Consensus 185 ~~qK--tL~~Csfc--PVFdv~~~Icsi~AT~d--sqVAvaTE 221 (671)
T PF15390_consen 185 SAQK--TLHRCSFC--PVFDVGGYICSIEATVD--SQVAVATE 221 (671)
T ss_pred Cchh--hhhhCCcc--eeecCCCceEEEEEecc--ceEEEEec
Confidence 5422 11111111 11123456666665544 35565554
No 395
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.83 E-value=0.73 Score=46.97 Aligned_cols=96 Identities=9% Similarity=0.083 Sum_probs=56.2
Q ss_pred cceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeecccc----ccc-cccccCCCccceeeEEEcCC---CCEE
Q 010206 343 ASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLR----PKL-CDLYENDSIFDKFECCLSGD---GGRV 414 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~v~~~~~s~~---~~~l 414 (515)
-.|..+.++|+|++|+..+...|.|-.+.........+.+..... ..+ ..++....-..|..+.|+|. +..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 468999999999999986665666666642100001111000000 000 01122222234678999996 4789
Q ss_pred EEecCCCcEEEEecCCCCcceeee
Q 010206 415 ATGSYSNLFRVFGCSEGSAESTTL 438 (515)
Q Consensus 415 ~s~s~dg~i~iw~~~~~~~~~~~~ 438 (515)
+.-..|+++|+||+.......+++
T Consensus 165 ~vLtsdn~lR~y~~~~~~~p~~v~ 188 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQHPWQVL 188 (717)
T ss_pred EEEecCCEEEEEecCCCCCCeEEE
Confidence 989999999999998654443333
No 396
>PRK13684 Ycf48-like protein; Provisional
Probab=94.79 E-value=3.4 Score=38.25 Aligned_cols=151 Identities=9% Similarity=0.029 Sum_probs=83.8
Q ss_pred cceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCc
Q 010206 343 ASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 422 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~ 422 (515)
..+.++.+.|++.+++++..|.+..- .+..++.-........ ..++.+.+.++++.++.| ..|.
T Consensus 173 g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~tW~~~~~~~~--------------~~l~~i~~~~~g~~~~vg-~~G~ 236 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQTAWTPHQRNSS--------------RRLQSMGFQPDGNLWMLA-RGGQ 236 (334)
T ss_pred ceEEEEEECCCCeEEEEeCCceEEEE-cCCCCCeEEEeeCCCc--------------ccceeeeEcCCCCEEEEe-cCCE
Confidence 56888999999988888877655431 1111222222211110 113488899999877765 4566
Q ss_pred EEEEecCCCCcceeeecc----CCCceeeEEECCCCCeeEeecCCCeEEE-ecCCCCCccccCCccccccCCeeEEEEcC
Q 010206 423 FRVFGCSEGSAESTTLEA----SKNPMRRQVQTPSRPSRPLGSLSGVVRR-VKGADNSALDANGNAFDFSMKLLHLAWHP 497 (515)
Q Consensus 423 i~iw~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~d~~v~l-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 497 (515)
+++=....+. .-..... ....+..+.+.+++..++.+ .+|.+.. .++.+.+....... ......+.+.|..
T Consensus 237 ~~~~s~d~G~-sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~S~d~G~tW~~~~~~~--~~~~~~~~~~~~~ 312 (334)
T PRK13684 237 IRFNDPDDLE-SWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLVSKDGGKTWEKDPVGE--EVPSNFYKIVFLD 312 (334)
T ss_pred EEEccCCCCC-ccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEEEeCCCCCCCeECCcCC--CCCcceEEEEEeC
Confidence 5432233321 1111111 12346778888887765554 5676666 45444442111101 1234688899988
Q ss_pred CCCEEEEEcCCcEEEE
Q 010206 498 SENSIACAASNSLYMY 513 (515)
Q Consensus 498 ~~~~la~~~~~~~~i~ 513 (515)
+++.+++|....|.-|
T Consensus 313 ~~~~~~~G~~G~il~~ 328 (334)
T PRK13684 313 PEKGFVLGQRGVLLRY 328 (334)
T ss_pred CCceEEECCCceEEEe
Confidence 8888887776655544
No 397
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.77 E-value=4.6 Score=39.73 Aligned_cols=28 Identities=14% Similarity=0.026 Sum_probs=23.1
Q ss_pred cEEEeeeCCCeEEEEEccCCeeEEEeec
Q 010206 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDW 154 (515)
Q Consensus 127 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 154 (515)
..++.++.++.|..+|.++++.......
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 4788888999999999999987766543
No 398
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.70 E-value=3.1 Score=37.32 Aligned_cols=124 Identities=15% Similarity=0.080 Sum_probs=70.8
Q ss_pred CeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecc-cCc-----cccccCCceEEEE--EecCCCcEEEEEecCCe
Q 010206 236 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDV-KPA-----NMEDLTEVITSAE--FHPTHCNMLAYSSSKGS 307 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~-~~~-----~~~~~~~~i~~i~--~~p~~~~~l~~~~~dg~ 307 (515)
.|..+...++-+.|++-.|+.+.++++..-......... .+. ........+...+ -...+ ...+.....+.
T Consensus 37 ~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~-~~~L~va~kk~ 115 (275)
T PF00780_consen 37 SITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEG-SRRLCVAVKKK 115 (275)
T ss_pred eEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeecccccc-ceEEEEEECCE
Confidence 388888888888888777799999998765433210000 000 0001122333333 12333 34444555569
Q ss_pred EEEEecCcccccc-cccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCC
Q 010206 308 IRLIDMRQSALCD-THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGP 376 (515)
Q Consensus 308 i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~ 376 (515)
|.+|......... ...+.+..+ ..+.+++|. ++.++.|......+.|+.+ +..
T Consensus 116 i~i~~~~~~~~~f~~~~ke~~lp-------------~~~~~i~~~--~~~i~v~~~~~f~~idl~~-~~~ 169 (275)
T PF00780_consen 116 ILIYEWNDPRNSFSKLLKEISLP-------------DPPSSIAFL--GNKICVGTSKGFYLIDLNT-GSP 169 (275)
T ss_pred EEEEEEECCcccccceeEEEEcC-------------CCcEEEEEe--CCEEEEEeCCceEEEecCC-CCc
Confidence 9999887642211 222333322 468889998 5677777666788999985 443
No 399
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.69 E-value=6 Score=40.64 Aligned_cols=84 Identities=18% Similarity=0.246 Sum_probs=54.1
Q ss_pred cCCeEEEEecCCCCEEEEeCCCcEEEEeCCCC-C---------c--ccceecccCccc-cccCCceEEEEEecCC--CcE
Q 010206 234 DYHINSISNNSDGETFISADDLRINLWNLEIS-N---------Q--SFNIVDVKPANM-EDLTEVITSAEFHPTH--CNM 298 (515)
Q Consensus 234 ~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~-~---------~--~~~~~~~~~~~~-~~~~~~i~~i~~~p~~--~~~ 298 (515)
...|..+.++|+|++++......|.|..+... . . ..+.+.+....+ ..+...|..+.|+|.+ ...
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 35788999999999999874455555555321 0 0 111111111111 2345678999999973 268
Q ss_pred EEEEecCCeEEEEecCccc
Q 010206 299 LAYSSSKGSIRLIDMRQSA 317 (515)
Q Consensus 299 l~~~~~dg~i~~wd~~~~~ 317 (515)
|+.-..|+.+|+||+....
T Consensus 164 l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEEecCCEEEEEecCCCC
Confidence 8888999999999997544
No 400
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=94.51 E-value=0.32 Score=44.84 Aligned_cols=157 Identities=8% Similarity=0.042 Sum_probs=90.1
Q ss_pred cceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCcccee-eEEEcCCCCEEEEecCCC
Q 010206 343 ASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF-ECCLSGDGGRVATGSYSN 421 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~s~dg 421 (515)
..+..+-..|||+.++.-+...+.++++.+ +.+..-+.-+... ++....|+ ++..-..|.-|..++.||
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~--r~l~~rkl~~dsp--------g~~~~~Vte~l~lL~Gg~SLLv~~~dG 290 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTGSELVVALLDK--RSLQIRKLVDDSP--------GDSRHQVTEQLYLLSGGFSLLVVHEDG 290 (733)
T ss_pred cchHhhEECCCCCEEEEecCCeEEEEeecc--cccchhhhhhcCC--------CchHHHHHHHHHHHhCceeEEEEcCCC
Confidence 578888999999999987778899999974 2221111111100 01111111 122223456678889999
Q ss_pred cEEEE-ecCCCCcc-e---eeeccCCCceeeEEECCCCCeeEeecCCCeEEEec-CCCCCccccCCccccccCCeeEEEE
Q 010206 422 LFRVF-GCSEGSAE-S---TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK-GADNSALDANGNAFDFSMKLLHLAW 495 (515)
Q Consensus 422 ~i~iw-~~~~~~~~-~---~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~-~~~~~~~~~~~~~~~~~~~i~~~~~ 495 (515)
.|.-| |.+.+... . ..++-...++..+.-....+.+++-+..|++.+.. ..+.. +..+ ..-..+..+++
T Consensus 291 ~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~---lL~~--~~~~~~~~~~~ 365 (733)
T COG4590 291 LVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKL---LLFE--RAYQAPQLVAM 365 (733)
T ss_pred ceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcc---eehh--hhhcCcceeee
Confidence 99887 55443222 1 11222234444444455566777777788777721 11111 1110 01236678999
Q ss_pred cCCCCEEEEEcCCcEEEEe
Q 010206 496 HPSENSIACAASNSLYMYY 514 (515)
Q Consensus 496 s~~~~~la~~~~~~~~i~~ 514 (515)
||.+.+|++-...++.++.
T Consensus 366 Sp~~~~Ll~e~~gki~~~~ 384 (733)
T COG4590 366 SPNQAYLLSEDQGKIRLAQ 384 (733)
T ss_pred CcccchheeecCCceEEEE
Confidence 9999999998888777764
No 401
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.28 E-value=2 Score=41.44 Aligned_cols=156 Identities=12% Similarity=0.081 Sum_probs=84.2
Q ss_pred cCCeEEEEecCCCCEEEEe---CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecC----CCcEEEEEecCC
Q 010206 234 DYHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT----HCNMLAYSSSKG 306 (515)
Q Consensus 234 ~~~v~~~~~~~~~~~l~s~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~----~~~~l~~~~~dg 306 (515)
-.++..++|..-.+.+.+. .+|.+++=|... -+.-+.|..+.|.|- .+.+|| --...
T Consensus 19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGds~v---------------iGqFEhV~GlsW~P~~~~~~paLLA-VQHkk 82 (671)
T PF15390_consen 19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGDSKV---------------IGQFEHVHGLSWAPPCTADTPALLA-VQHKK 82 (671)
T ss_pred hccccceEecCCCEEEEEeeeeeCCccccCCccE---------------eeccceeeeeeecCcccCCCCceEE-Eeccc
Confidence 3678889996544445554 355555444321 223455899999885 223444 55677
Q ss_pred eEEEEecCcccccccc---cceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEee
Q 010206 307 SIRLIDMRQSALCDTH---SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV 382 (515)
Q Consensus 307 ~i~~wd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~ 382 (515)
.|.+|.+.....-... .++.+..+ +.. ---..+.|+|....|+.-.. ..-.+++++.+...++.=..
T Consensus 83 hVtVWqL~~s~~e~~K~l~sQtcEi~e---~~p------vLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~ 153 (671)
T PF15390_consen 83 HVTVWQLCPSTTERNKLLMSQTCEIRE---PFP------VLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK 153 (671)
T ss_pred eEEEEEeccCccccccceeeeeeeccC---Ccc------cCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc
Confidence 8999998632211100 01111111 000 01245779998888876433 23345566543333322111
Q ss_pred eccccccccccccCCCccceeeEEEcCCCCEEEEe-cCCCcEEEEecC
Q 010206 383 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCS 429 (515)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-s~dg~i~iw~~~ 429 (515)
..+. |.+.||.+||+.|+.+ +..=.-++||-.
T Consensus 154 ~~G~---------------IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 154 TSGL---------------IHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CCce---------------EEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 1211 5599999999987754 333456788754
No 402
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.90 E-value=5.9 Score=37.48 Aligned_cols=146 Identities=12% Similarity=0.123 Sum_probs=80.9
Q ss_pred ceeEEEEccCCCEEEEEcCCeEE-EEEeeCCCCCe-eeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCC
Q 010206 344 SISDIKFARNGRHILSRDYMTLK-LWDINMDSGPV-ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 421 (515)
Q Consensus 344 ~i~~~~~s~~~~~l~s~~~~~i~-iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg 421 (515)
....+..+++|.+++.+..|.+. -||- +... ........ ..++.+.+.+++.+++++ .+|
T Consensus 240 sf~~v~~~~dG~~~~vg~~G~~~~s~d~---G~~~W~~~~~~~~--------------~~l~~v~~~~dg~l~l~g-~~G 301 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSSRGNFYLTWEP---GQPYWQPHNRASA--------------RRIQNMGWRADGGLWLLT-RGG 301 (398)
T ss_pred ceeeEEEcCCCCEEEEECCccEEEecCC---CCcceEEecCCCc--------------cceeeeeEcCCCCEEEEe-CCc
Confidence 35556778899999888876443 3332 2211 11111111 013478899999987765 455
Q ss_pred cEEEEecCCCCc----ceeeecc--CCCceeeEEECCCCCeeEeecCCCeEEE-ecCCCCCccccCCccccccCCeeEEE
Q 010206 422 LFRVFGCSEGSA----ESTTLEA--SKNPMRRQVQTPSRPSRPLGSLSGVVRR-VKGADNSALDANGNAFDFSMKLLHLA 494 (515)
Q Consensus 422 ~i~iw~~~~~~~----~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~v~l-~~~~~~~~~~~~~~~~~~~~~i~~~~ 494 (515)
.+. +....+.. ....+.. ....+..+.+.+++..+++| ..|.+.. .++.+.+..... .-.....++.+.
T Consensus 302 ~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~D~G~tW~~~~~--~~~~~~~ly~v~ 377 (398)
T PLN00033 302 GLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRSTDGGKSWKRDKG--ADNIAANLYSVK 377 (398)
T ss_pred eEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeCCCCcceeEccc--cCCCCcceeEEE
Confidence 543 33333321 1112211 22347788898887776666 4565555 556666532110 112245788999
Q ss_pred EcCCCCEEEEEcCCcEE
Q 010206 495 WHPSENSIACAASNSLY 511 (515)
Q Consensus 495 ~s~~~~~la~~~~~~~~ 511 (515)
|.++++.+++|...-++
T Consensus 378 f~~~~~g~~~G~~G~il 394 (398)
T PLN00033 378 FFDDKKGFVLGNDGVLL 394 (398)
T ss_pred EcCCCceEEEeCCcEEE
Confidence 98887777776654443
No 403
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.89 E-value=4.7 Score=36.35 Aligned_cols=238 Identities=13% Similarity=0.115 Sum_probs=107.0
Q ss_pred CcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccc-cCCceEEEEEecCCCcEEEEEecCCeEEEE
Q 010206 233 HDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLI 311 (515)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~l~~~~~dg~i~~w 311 (515)
-...+.+|.|..+.+-+++|..+.| +....+...-+.... .... ......+|.|..+ ..+++| ..+.| +.
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~~g~i--l~T~DGG~tW~~~~~---~~~~~~~~~l~~I~f~~~--~g~ivG-~~g~l-l~ 85 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGAYGTI--LKTTDGGKTWQPVSL---DLDNPFDYHLNSISFDGN--EGWIVG-EPGLL-LH 85 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEETTTEE--EEESSTTSS-EE--------S-----EEEEEEEETT--EEEEEE-ETTEE-EE
T ss_pred CCCceEEEEEecCCEEEEEecCCEE--EEECCCCcccccccc---CCCccceeeEEEEEecCC--ceEEEc-CCceE-EE
Confidence 3457889999877778888876654 334334333221110 0110 1233667888653 345544 44532 22
Q ss_pred ecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeecccccccc
Q 010206 312 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLC 391 (515)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 391 (515)
-...++. ++.-..+ ....+....+....++..++++..|. ||.....++.=+.+.....
T Consensus 86 T~DgG~t-------W~~v~l~------~~lpgs~~~i~~l~~~~~~l~~~~G~--iy~T~DgG~tW~~~~~~~~------ 144 (302)
T PF14870_consen 86 TTDGGKT-------WERVPLS------SKLPGSPFGITALGDGSAELAGDRGA--IYRTTDGGKTWQAVVSETS------ 144 (302)
T ss_dssp ESSTTSS--------EE----------TT-SS-EEEEEEEETTEEEEEETT----EEEESSTTSSEEEEE-S--------
T ss_pred ecCCCCC-------cEEeecC------CCCCCCeeEEEEcCCCcEEEEcCCCc--EEEeCCCCCCeeEcccCCc------
Confidence 2222321 1110000 00001223333334444444444343 4444433433322221110
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEec-
Q 010206 392 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK- 470 (515)
Q Consensus 392 ~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~- 470 (515)
..+..+..++||+++++++....+.-||-...... ..-......+..+.|.|++...+.+ ..|.+++-+
T Consensus 145 --------gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~-~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~ 214 (302)
T PF14870_consen 145 --------GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQ-PHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDD 214 (302)
T ss_dssp ----------EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-E-EEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-
T ss_pred --------ceeEeEEECCCCcEEEEECcccEEEEecCCCccce-EEccCccceehhceecCCCCEEEEe-CCcEEEEccC
Confidence 11347788899999998877666667875432122 1222346789999999997765544 888888832
Q ss_pred --CCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcEE
Q 010206 471 --GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLY 511 (515)
Q Consensus 471 --~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~ 511 (515)
..+.+...... ...-.-.+.+++|.+++...|+++...++
T Consensus 215 ~~~~~~w~~~~~~-~~~~~~~~ld~a~~~~~~~wa~gg~G~l~ 256 (302)
T PF14870_consen 215 PDDGETWSEPIIP-IKTNGYGILDLAYRPPNEIWAVGGSGTLL 256 (302)
T ss_dssp TTEEEEE---B-T-TSS--S-EEEEEESSSS-EEEEESTT-EE
T ss_pred CCCccccccccCC-cccCceeeEEEEecCCCCEEEEeCCccEE
Confidence 11111100111 11113348999999999988888776544
No 404
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.48 E-value=6.3 Score=36.44 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=36.6
Q ss_pred CeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecC
Q 010206 236 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT 294 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~ 294 (515)
..++|+|.|++++|++-..|.|++++.. +.....+..+. ............++++|+
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~-g~~~~~v~~~~-~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKD-GSLKTPVADLP-EVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETT-TEECEEEEE-T-TTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCC-CcCcceecccc-cccccccCCcccceeccc
Confidence 4678999999988887789999999933 33211121111 122334567899999994
No 405
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.42 E-value=5.1 Score=35.25 Aligned_cols=212 Identities=12% Similarity=0.086 Sum_probs=110.8
Q ss_pred cccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEE
Q 010206 280 EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 359 (515)
Q Consensus 280 ~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 359 (515)
.+-...+.++.|+|+. +.|++......-.++=...|+++.+..-. + -.....+.+..+|++.++
T Consensus 82 ~g~~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~GdlirtiPL~--------------g-~~DpE~Ieyig~n~fvi~ 145 (316)
T COG3204 82 LGETANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGDLIRTIPLT--------------G-FSDPETIEYIGGNQFVIV 145 (316)
T ss_pred ccccccccceeeCCCc-ceEEEecCCCceEEEEecCCceEEEeccc--------------c-cCChhHeEEecCCEEEEE
Confidence 3445559999999998 66666666555555555566654321111 1 022345677777777777
Q ss_pred EcC-CeEEEEEeeCCCCCeeeEeeecccccccccccc-CCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcce--
Q 010206 360 RDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYE-NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES-- 435 (515)
Q Consensus 360 ~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~-- 435 (515)
-.. +.+.++.+.. ...+....... -.+..... |.. .-.++|+|....|+.+-+-.=+.||..+......
T Consensus 146 dER~~~l~~~~vd~-~t~~~~~~~~~---i~L~~~~k~N~G---fEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~ 218 (316)
T COG3204 146 DERDRALYLFTVDA-DTTVISAKVQK---IPLGTTNKKNKG---FEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSV 218 (316)
T ss_pred ehhcceEEEEEEcC-CccEEeccceE---EeccccCCCCcC---ceeeecCCCCceEEEEEccCCcEEEEEecCCccccc
Confidence 654 8888888875 32221111100 00000000 111 2379999999998888877777777665332111
Q ss_pred eeeccC-------CCceeeEEECCC-CCeeEeecCCCeEEE--ecCCCCCccccCCcccccc---CCeeEEEEcCCCCEE
Q 010206 436 TTLEAS-------KNPMRRQVQTPS-RPSRPLGSLSGVVRR--VKGADNSALDANGNAFDFS---MKLLHLAWHPSENSI 502 (515)
Q Consensus 436 ~~~~~~-------~~~v~~~~~~~~-~~~l~s~~~d~~v~l--~~~~~~~~~~~~~~~~~~~---~~i~~~~~s~~~~~l 502 (515)
.....+ -..+..+.+.+. +..|+-+.+++.+.- .+|.-.....+.....+.. ..-..++..++|+.-
T Consensus 219 ~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lY 298 (316)
T COG3204 219 HASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLY 298 (316)
T ss_pred ccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEE
Confidence 111111 123455666543 445555555554433 1111111001111111112 234678888999888
Q ss_pred EEEcCCcEEEEe
Q 010206 503 ACAASNSLYMYY 514 (515)
Q Consensus 503 a~~~~~~~~i~~ 514 (515)
+++-.|.++.|.
T Consensus 299 IvSEPnlfy~F~ 310 (316)
T COG3204 299 IVSEPNLFYRFT 310 (316)
T ss_pred EEecCCcceecc
Confidence 777777766653
No 406
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.42 E-value=0.39 Score=40.10 Aligned_cols=65 Identities=11% Similarity=0.154 Sum_probs=39.4
Q ss_pred CCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEE-ecCCCcEEEEEecCCeEEEEecCcccc
Q 010206 246 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF-HPTHCNMLAYSSSKGSIRLIDMRQSAL 318 (515)
Q Consensus 246 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~-~p~~~~~l~~~~~dg~i~~wd~~~~~~ 318 (515)
+..+++| .+|.|.+|........... .......|-++-- -.++ .+..+++.||.|+.|++.-.+.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~-------~~s~~e~i~~~Ip~~~~~-~~~c~~~~dg~ir~~n~~p~k~ 136 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDR-------VCSGEESIDLGIPNGRDS-SLGCVGAQDGRIRACNIKPNKV 136 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHh-------hhcccccceecccccccc-ceeEEeccCCceeeeccccCce
Confidence 4456677 8999999998733322211 1111233333222 2233 5888999999999999876553
No 407
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.42 E-value=0.64 Score=48.18 Aligned_cols=154 Identities=12% Similarity=0.017 Sum_probs=91.8
Q ss_pred CCeEEEEecCCCCEEEEe---CCCcEEEEeCCCCCcccceec--ccC-ccccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010206 235 YHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVD--VKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 308 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~---~d~~i~iwd~~~~~~~~~~~~--~~~-~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i 308 (515)
..+..+...+|+...++. .+-.|..||+++-........ ++. +..........++.|+|.-+...+....|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 345555666776665553 455788899875432211100 000 01111233456788998766677888889999
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccc
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLR 387 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~ 387 (515)
++..+....... ..+. -....++++|+|.|+.++.|.. |++.-|... .+....+......
T Consensus 181 ~V~~~~~~~~~v---~s~p-------------~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~--leik~~ip~Pp~~- 241 (1405)
T KOG3630|consen 181 RVKSTKQLAQNV---TSFP-------------VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS--LEIKSEIPEPPVE- 241 (1405)
T ss_pred hhhhhhhhhhhh---cccC-------------cccceeeEEeccccceeeEecCCCeEEEeecc--cceeecccCCCcC-
Confidence 988765433211 1111 1146899999999999999987 999888765 3333333322211
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEe
Q 010206 388 PKLCDLYENDSIFDKFECCLSGDGGRVATG 417 (515)
Q Consensus 388 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 417 (515)
+ .+.|.+++|-....+++.-
T Consensus 242 -------e---~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 242 -------E---NYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred -------C---CcceeEEEEecceeEEEEe
Confidence 1 2346789998887777643
No 408
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.05 E-value=7.3 Score=39.44 Aligned_cols=121 Identities=16% Similarity=0.210 Sum_probs=70.5
Q ss_pred CeEEEEec--CCCCEEEEe-CCCcEEEEeCCCCCcc-----------cceecccCccccccCCceEEEEEe--cCCCcEE
Q 010206 236 HINSISNN--SDGETFISA-DDLRINLWNLEISNQS-----------FNIVDVKPANMEDLTEVITSAEFH--PTHCNML 299 (515)
Q Consensus 236 ~v~~~~~~--~~~~~l~s~-~d~~i~iwd~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~i~~~--p~~~~~l 299 (515)
.|+.|... -....|+.+ +||.|.+|.+++--.. ......+|.-.......+++++++ ... ++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~-rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKS-RLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcc-eEE
Confidence 34444433 245566667 9999999976321000 000112332222345678999998 666 899
Q ss_pred EEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccC-----CC-EEEEEcC-CeEEEEEe
Q 010206 300 AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-----GR-HILSRDY-MTLKLWDI 370 (515)
Q Consensus 300 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-----~~-~l~s~~~-~~i~iwd~ 370 (515)
|+++....|.||-+....... .... -..|...|.+|.|-++ |. .+++++- |.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~-----~~~~--------s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERF-----YHVP--------SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEecccccc-----cccc--------ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 999999999988765531110 0000 0114456889999763 22 4555554 89988888
No 409
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.94 E-value=7.6 Score=35.85 Aligned_cols=169 Identities=12% Similarity=0.100 Sum_probs=84.6
Q ss_pred CCeEEEEecC-CCCEEEEeCCCc------EEEEeCCCCC-cccceecccCccccccC--------CceEEEEEecCCCcE
Q 010206 235 YHINSISNNS-DGETFISADDLR------INLWNLEISN-QSFNIVDVKPANMEDLT--------EVITSAEFHPTHCNM 298 (515)
Q Consensus 235 ~~v~~~~~~~-~~~~l~s~~d~~------i~iwd~~~~~-~~~~~~~~~~~~~~~~~--------~~i~~i~~~p~~~~~ 298 (515)
+.+..+.+.+ ++.+++.++++. +..+++.... ....+.......+..-. .-.-+|++.+++ .+
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g-~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG-SF 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC-CE
Confidence 6678899985 555555567776 6666655311 11111000001111111 133478887777 67
Q ss_pred EEEEecC------CeEEEEecCcccccccccceeeeccCCCcc---ccccccccceeEEEEccCCCEEEEEc------CC
Q 010206 299 LAYSSSK------GSIRLIDMRQSALCDTHSKLFEEQEAPGTR---SFFTEIIASISDIKFARNGRHILSRD------YM 363 (515)
Q Consensus 299 l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~s~~~~~l~s~~------~~ 363 (515)
+++.-.+ ..|..++.. +..... +..+...... ..-......+.+++++|+|+.|+++. ++
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~----~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~ 173 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRR----FPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDG 173 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-Ccccce----EccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCC
Confidence 7766666 788888866 544221 1111100000 01122346799999999999655431 21
Q ss_pred --e-------EEEEEeeC--CCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEE
Q 010206 364 --T-------LKLWDINM--DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA 415 (515)
Q Consensus 364 --~-------i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 415 (515)
. ++++.+.. .+++...+......... ......+..+.+-+++++|+
T Consensus 174 ~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~------~~~~~~isd~~al~d~~lLv 230 (326)
T PF13449_consen 174 PRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPT------APGDNGISDIAALPDGRLLV 230 (326)
T ss_pred cccccccCceEEEEEecCCCCCccceEEEEeCCcccc------ccCCCCceeEEEECCCcEEE
Confidence 2 55655543 13334444333221000 00223456888888998776
No 410
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.92 E-value=7.5 Score=36.62 Aligned_cols=58 Identities=5% Similarity=-0.161 Sum_probs=34.8
Q ss_pred eEEEcCCCCEEEEecCC-------------------CcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCC
Q 010206 404 ECCLSGDGGRVATGSYS-------------------NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS 463 (515)
Q Consensus 404 ~~~~s~~~~~l~s~s~d-------------------g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 463 (515)
.++|.|||.+.++-+.. |.|.-++...+ .. ..+.........+++++++.++++-..+
T Consensus 128 ~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~-~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 128 SLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGG-KL-RVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCC-eE-EEEecCcCCCccceECCCCCEEEEccCC
Confidence 78999999876654421 34555555433 22 2222223334588999999888775544
No 411
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=92.91 E-value=13 Score=38.57 Aligned_cols=120 Identities=10% Similarity=0.036 Sum_probs=65.9
Q ss_pred CceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccC--CC----EE
Q 010206 284 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN--GR----HI 357 (515)
Q Consensus 284 ~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~----~l 357 (515)
+.++..+.+.+. ..++.++.++.+...++..+.+.....+.++ ..|.|+.++|- ++ ++
T Consensus 488 ~~~ti~~~~~n~-sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e---------------~evaCLDisp~~d~~~~s~~~ 551 (1096)
T KOG1897|consen 488 GKITIGVVSANA-SQVVVAGGGLALFYLEIEDGGLREVSHKEFE---------------YEVACLDISPLGDAPNKSRLL 551 (1096)
T ss_pred CceEEEEEeecc-eEEEEecCccEEEEEEeeccceeeeeeheec---------------ceeEEEecccCCCCCCcceEE
Confidence 344444555554 5777777778887777766553222222222 57999999973 32 66
Q ss_pred EEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCC
Q 010206 358 LSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 358 ~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~ 430 (515)
+.|.. ..+.+.-...+...+..........+ ..+.-.+|-.|..+|.++..||.+..|-+..
T Consensus 552 aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iP-----------RSIl~~~~e~d~~yLlvalgdG~l~~fv~d~ 614 (1096)
T KOG1897|consen 552 AVGLWSDISMILTFLPDLILITHEQLSGEIIP-----------RSILLTTFEGDIHYLLVALGDGALLYFVLDI 614 (1096)
T ss_pred EEEeecceEEEEEECCCcceeeeeccCCCccc-----------hheeeEEeeccceEEEEEcCCceEEEEEEEc
Confidence 67754 33333322211222211111111111 1133567777788999999999988765543
No 412
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.72 E-value=8.9 Score=36.11 Aligned_cols=234 Identities=13% Similarity=0.108 Sum_probs=95.4
Q ss_pred CCCEEEE-e-CCCcEEEEeCCCCCcccceecc-cCcccc--ccCCceEEEEEecCCCcEEEEEec------CCeEEEEec
Q 010206 245 DGETFIS-A-DDLRINLWNLEISNQSFNIVDV-KPANME--DLTEVITSAEFHPTHCNMLAYSSS------KGSIRLIDM 313 (515)
Q Consensus 245 ~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~-~~~~~~--~~~~~i~~i~~~p~~~~~l~~~~~------dg~i~~wd~ 313 (515)
+.++|+. | ..+.|++.|+.+.-...++... .+..+. ..-.....+-.-|+| .+++++-. .|.+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G-~imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDG-RIMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCc-cEEEEeccCCCCCCCCcEEEEcC
Confidence 4666776 5 7999999999854433332211 110111 111334455566787 67776532 245777776
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc--------------------C-CeEEEEEeeC
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--------------------Y-MTLKLWDINM 372 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--------------------~-~~i~iwd~~~ 372 (515)
++.+.. ..++..... ..--..+-+.|..+.+++.+ . .++.+||+.+
T Consensus 165 ~tf~v~----g~We~~~~~---------~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~ 231 (461)
T PF05694_consen 165 ETFEVK----GRWEKDRGP---------QPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWST 231 (461)
T ss_dssp TT--EE----EE--SB-TT---------------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTT
T ss_pred cccccc----ceeccCCCC---------CCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCC
Confidence 654432 222221110 01234455556555555421 2 5899999996
Q ss_pred CCCCeeeEeeeccccccccccccCCCccceeeEEE--cCCCCEEEE-ecCCCcEEEEec-CCCCcce---eeec-----c
Q 010206 373 DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL--SGDGGRVAT-GSYSNLFRVFGC-SEGSAES---TTLE-----A 440 (515)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s-~s~dg~i~iw~~-~~~~~~~---~~~~-----~ 440 (515)
.+.++++.......- ...+.| .|+..+=++ +.-..+|..|-. ..+.... ..+. +
T Consensus 232 -r~~~Q~idLg~~g~~-------------pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 232 -RKLLQTIDLGEEGQM-------------PLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG 297 (461)
T ss_dssp -TEEEEEEES-TTEEE-------------EEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred -CcEeeEEecCCCCCc-------------eEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence 888888875432110 123444 444554333 333444544433 3332111 1111 0
Q ss_pred C------------CCceeeEEECCCCCeeEe-ecCCCeEEEecCCCCCccccCCcc----------------ccccCCee
Q 010206 441 S------------KNPMRRQVQTPSRPSRPL-GSLSGVVRRVKGADNSALDANGNA----------------FDFSMKLL 491 (515)
Q Consensus 441 ~------------~~~v~~~~~~~~~~~l~s-~~~d~~v~l~~~~~~~~~~~~~~~----------------~~~~~~i~ 491 (515)
- ..-++.+.+|.|.++|.. +-.+|.+|.++-..+....+.++. ....+...
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPq 377 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQ 377 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S---
T ss_pred ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCC
Confidence 1 233678899999998754 455899988333332222222110 01123347
Q ss_pred EEEEcCCCCEEEEEc
Q 010206 492 HLAWHPSENSIACAA 506 (515)
Q Consensus 492 ~~~~s~~~~~la~~~ 506 (515)
-+..|-||++|.+.+
T Consensus 378 MvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 378 MVQLSLDGKRLYVTN 392 (461)
T ss_dssp -EEE-TTSSEEEEE-
T ss_pred eEEEccCCeEEEEEe
Confidence 788999999998764
No 413
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.50 E-value=2.5 Score=40.20 Aligned_cols=89 Identities=20% Similarity=0.271 Sum_probs=53.6
Q ss_pred cceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCcccc
Q 010206 400 FDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDA 479 (515)
Q Consensus 400 ~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~ 479 (515)
+.|..+..++.|..++-.+.+|.+.++=.+..+.- ..++.....|++..++-+.+++.+.
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~-s~~eDgk~~v~CRt~~i~~~~ftss------------------- 163 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKN-SEFEDGKSTVNCRTTPVAERFFTSS------------------- 163 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCcc-ceecCCCceEEEEeecccceeeccC-------------------
Confidence 45678889999999998888886655432222111 2344444445555555443333221
Q ss_pred CCccccccCCeeEEEEcCCC----CEEEEEcCCcEEEEe
Q 010206 480 NGNAFDFSMKLLHLAWHPSE----NSIACAASNSLYMYY 514 (515)
Q Consensus 480 ~~~~~~~~~~i~~~~~s~~~----~~la~~~~~~~~i~~ 514 (515)
..-.+..++|+|+. ..++-.+++-+.+|+
T Consensus 164 ------~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~ 196 (741)
T KOG4460|consen 164 ------TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYS 196 (741)
T ss_pred ------CceeeeeccccCCccCCceEEEEecCcEEEEEe
Confidence 12356888999976 345566677788876
No 414
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.35 E-value=8.3 Score=36.33 Aligned_cols=113 Identities=9% Similarity=0.107 Sum_probs=55.8
Q ss_pred CCeEEEEecCCCCEEEEeC------------CC-cEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEE
Q 010206 235 YHINSISNNSDGETFISAD------------DL-RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY 301 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~~------------d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~ 301 (515)
.....|+|.++|+++++-. .+ .|.+++-..+.-..... ..+...-.....+++.+++ +++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~----~vfa~~l~~p~Gi~~~~~G--lyV- 86 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKS----NVFAEELSMVTGLAVAVGG--VYV- 86 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCccee----EEeecCCCCccceeEecCC--EEE-
Confidence 4567899999999888741 12 67666543322111100 0111123345789999886 444
Q ss_pred EecCCeEEEEecCcccccc-cccceeeeccCCCccccccccccceeEEEEccCCCEEEE
Q 010206 302 SSSKGSIRLIDMRQSALCD-THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 359 (515)
Q Consensus 302 ~~~dg~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 359 (515)
+......++.|........ +....+..-... -..+......++|.|||.+.++
T Consensus 87 ~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~-----~~~~~~~~~~l~~gpDG~LYv~ 140 (367)
T TIGR02604 87 ATPPDILFLRDKDGDDKADGEREVLLSGFGGQ-----INNHHHSLNSLAWGPDGWLYFN 140 (367)
T ss_pred eCCCeEEEEeCCCCCCCCCCccEEEEEccCCC-----CCcccccccCceECCCCCEEEe
Confidence 4444433344543221111 111111111000 0001234778999999987776
No 415
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.26 E-value=8.5 Score=34.78 Aligned_cols=147 Identities=14% Similarity=0.176 Sum_probs=76.6
Q ss_pred cceeEEEEccCCCEEEEEcCCeE-EEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCC
Q 010206 343 ASISDIKFARNGRHILSRDYMTL-KLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 421 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~~~~~i-~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg 421 (515)
+.+..+..++||++++++..|.+ .-||-. +. ....|.... -..+.++.|+|++.+.+.+ ..|
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G---~~--~w~~~~r~~-----------~~riq~~gf~~~~~lw~~~-~Gg 207 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPG---QT--TWQPHNRNS-----------SRRIQSMGFSPDGNLWMLA-RGG 207 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT----S--S-EEEE--S-----------SS-EEEEEE-TTS-EEEEE-TTT
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCC---Cc--cceEEccCc-----------cceehhceecCCCCEEEEe-CCc
Confidence 67888889999999999988544 466643 11 122222110 0124589999998876654 778
Q ss_pred cEEEEecCCCCcceeeecc-------CCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEE
Q 010206 422 LFRVFGCSEGSAESTTLEA-------SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLA 494 (515)
Q Consensus 422 ~i~iw~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 494 (515)
.|++=+.... ..++.. ....+-.+++.+++...++|+....++=.++.+.++..... ......++.+.
T Consensus 208 ~~~~s~~~~~---~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~~--~~~~~n~~~i~ 282 (302)
T PF14870_consen 208 QIQFSDDPDD---GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRVG--ENVPSNLYRIV 282 (302)
T ss_dssp EEEEEE-TTE---EEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE-GGG--TTSSS---EEE
T ss_pred EEEEccCCCC---ccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeCCCCccceECccc--cCCCCceEEEE
Confidence 8887662211 122222 22335688999988888877655444447777776422221 12356789999
Q ss_pred EcCCCCEEEEEcCCcEEE
Q 010206 495 WHPSENSIACAASNSLYM 512 (515)
Q Consensus 495 ~s~~~~~la~~~~~~~~i 512 (515)
|.++.+-++.|.+ |++|
T Consensus 283 f~~~~~gf~lG~~-G~ll 299 (302)
T PF14870_consen 283 FVNPDKGFVLGQD-GVLL 299 (302)
T ss_dssp EEETTEEEEE-ST-TEEE
T ss_pred EcCCCceEEECCC-cEEE
Confidence 9887777777764 4444
No 416
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.16 E-value=1 Score=38.57 Aligned_cols=79 Identities=9% Similarity=0.066 Sum_probs=52.2
Q ss_pred EecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEe
Q 010206 291 FHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDI 370 (515)
Q Consensus 291 ~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~ 370 (515)
+..++ .++++-+.+|.+++||+.+++...........-...... -......|..+.++.+|.-+++-+.|..+.|+.
T Consensus 18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~--~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVS--DKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSP 94 (219)
T ss_pred EEeCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccc--cCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecc
Confidence 44455 789999999999999999987654432111110000000 002346788999999999888877788888887
Q ss_pred eC
Q 010206 371 NM 372 (515)
Q Consensus 371 ~~ 372 (515)
..
T Consensus 95 ~L 96 (219)
T PF07569_consen 95 DL 96 (219)
T ss_pred cc
Confidence 64
No 417
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.05 E-value=3.7 Score=43.01 Aligned_cols=153 Identities=8% Similarity=0.025 Sum_probs=86.7
Q ss_pred cceeEEEEccCCCEEEEEc---CCeEEEEEeeCCCCC----eeeEeeeccccccccccccCCCccceeeEEEcCCCCE-E
Q 010206 343 ASISDIKFARNGRHILSRD---YMTLKLWDINMDSGP----VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR-V 414 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~~---~~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l 414 (515)
-+|..+...+|+...+... +-.|..||++..... ...+..+.-.. +.+.-..++.|.|.-.. .
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~---------ek~vf~~~~~wnP~vp~n~ 171 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSF---------EKPVFQLKNVWNPLVPLNS 171 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchh---------ccccccccccccCCccchh
Confidence 3566677777877666532 247889998741111 11111111100 00011236778775433 4
Q ss_pred EEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEE
Q 010206 415 ATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLA 494 (515)
Q Consensus 415 ~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 494 (515)
+....|+.|++..+.........+ .-....++++|+|.|+.++.|-..|++.-+.-.-.....+..........|.++.
T Consensus 172 av~l~dlsl~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~ 250 (1405)
T KOG3630|consen 172 AVDLSDLSLRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVT 250 (1405)
T ss_pred hhhccccchhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEE
Confidence 556688999988776443332222 2345678999999999999999999876511000000011111111257899999
Q ss_pred EcCCCCEEEEE
Q 010206 495 WHPSENSIACA 505 (515)
Q Consensus 495 ~s~~~~~la~~ 505 (515)
|-....++++-
T Consensus 251 Wl~t~eflvvy 261 (1405)
T KOG3630|consen 251 WLSTQEFLVVY 261 (1405)
T ss_pred EecceeEEEEe
Confidence 99888888754
No 418
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.78 E-value=6.7 Score=36.75 Aligned_cols=128 Identities=9% Similarity=0.050 Sum_probs=74.8
Q ss_pred EEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCccc
Q 010206 238 NSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 317 (515)
Q Consensus 238 ~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~ 317 (515)
+.+-|+...+.|++...|.+.=|.+.....-. .+.--....++|.++.|++|. +.+|.--.+..|.+++....+
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpndDV-----piSfdm~d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~ 99 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDV-----PISFDMDDKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDN 99 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCCCCC-----CceeeecCCCceeEEEeccCc-ceEEEEecCceEEEEecCCCc
Confidence 44556555666665555556666665443211 111112246799999999998 899999999999999984332
Q ss_pred ccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeec
Q 010206 318 LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHE 384 (515)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~ 384 (515)
......... +..+..|....|+.. .-+|.-++..+.+|......+.++..+.+.
T Consensus 100 ~~l~~~~~c------------k~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~ 153 (657)
T KOG2377|consen 100 SQLEYTQEC------------KTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHN 153 (657)
T ss_pred hhhHHHHHh------------ccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcc
Confidence 211111111 112245888899854 566665554577777664344444444433
No 419
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.77 E-value=16 Score=36.83 Aligned_cols=55 Identities=16% Similarity=0.145 Sum_probs=36.7
Q ss_pred CeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCC
Q 010206 236 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH 295 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~ 295 (515)
.+-.+.|+.+..+|+...+|++++|++-.......-+ ..+.....|..+.+..+|
T Consensus 85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~sv-----g~e~~~~~I~ec~~f~~G 139 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSV-----GFESQMSDIVECRFFHNG 139 (829)
T ss_pred CeeeecccCCceEEEEeccceEEEeecchhhhccccc-----ccccccCceeEEEEecCc
Confidence 7789999999988888899999999986332221000 112234456666666676
No 420
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=91.77 E-value=8.4 Score=33.70 Aligned_cols=187 Identities=14% Similarity=0.095 Sum_probs=101.1
Q ss_pred CcCCeEEEEecCCCCEEEE-e--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010206 233 HDYHINSISNNSDGETFIS-A--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 309 (515)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~s-~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~ 309 (515)
...-...+.|..++.++-+ | ....|+.+|+.+++.... ..+.+ ...--.++...+ .+....-.++...
T Consensus 43 ~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~-~~l~~------~~FgEGit~~~d--~l~qLTWk~~~~f 113 (264)
T PF05096_consen 43 PTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQS-VPLPP------RYFGEGITILGD--KLYQLTWKEGTGF 113 (264)
T ss_dssp TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEE-EE-TT------T--EEEEEEETT--EEEEEESSSSEEE
T ss_pred CcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEE-EECCc------cccceeEEEECC--EEEEEEecCCeEE
Confidence 3344567888778877776 4 366899999998764422 11111 112234555543 5666677899999
Q ss_pred EEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccc
Q 010206 310 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRP 388 (515)
Q Consensus 310 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~ 388 (515)
+||..+.+...+ +.-. +.=..++ .|++.|+..+. ..|+++|..+ .+....+.......
T Consensus 114 ~yd~~tl~~~~~----~~y~-------------~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~-f~~~~~i~V~~~g~- 172 (264)
T PF05096_consen 114 VYDPNTLKKIGT----FPYP-------------GEGWGLT--SDGKRLIMSDGSSRLYFLDPET-FKEVRTIQVTDNGR- 172 (264)
T ss_dssp EEETTTTEEEEE----EE-S-------------SS--EEE--ECSSCEEEE-SSSEEEEE-TTT--SEEEEEE-EETTE-
T ss_pred EEccccceEEEE----EecC-------------CcceEEE--cCCCEEEEECCccceEEECCcc-cceEEEEEEEECCE-
Confidence 999987665322 2211 2234455 45666666544 7999999875 56666665443221
Q ss_pred cccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeec---------------cCCCceeeEEECCC
Q 010206 389 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE---------------ASKNPMRRQVQTPS 453 (515)
Q Consensus 389 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~---------------~~~~~v~~~~~~~~ 453 (515)
.+..+..+.+- +|...|=.=....|...|..+|... ..+. ...+-.+.+|+.|.
T Consensus 173 ---------pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~-~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~ 241 (264)
T PF05096_consen 173 ---------PVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVV-GWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPE 241 (264)
T ss_dssp ---------E---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEE-EEEE-HHHHHHHTSTTST--TTS-EEEEEEETT
T ss_pred ---------ECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEE-EEEEhhHhhhcccccccccccCCeeEeEeEeCC
Confidence 11112355554 5655554445566777777776322 2111 11345788999876
Q ss_pred CCe-eEee
Q 010206 454 RPS-RPLG 460 (515)
Q Consensus 454 ~~~-l~s~ 460 (515)
... +++|
T Consensus 242 ~~~l~vTG 249 (264)
T PF05096_consen 242 TDRLFVTG 249 (264)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEe
Confidence 554 4443
No 421
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=90.20 E-value=18 Score=34.82 Aligned_cols=59 Identities=10% Similarity=0.088 Sum_probs=38.3
Q ss_pred CCeEEEEecCCCCEEEEeC-CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecC
Q 010206 235 YHINSISNNSDGETFISAD-DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT 294 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~ 294 (515)
...+.|+|.|++++|++-. .|.|++++....... .+..+..............|+++|+
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~-~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVK-VVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCcee-eeecCCceeccCCCCceeeEEECCC
Confidence 5678999999999888875 699999986543321 1111111111113567899999987
No 422
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.98 E-value=2 Score=36.80 Aligned_cols=72 Identities=15% Similarity=0.209 Sum_probs=48.6
Q ss_pred ecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCcccc-------ccCCceEEEEEecCCCcEEEEEecCCeEEEEec
Q 010206 242 NNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME-------DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 313 (515)
Q Consensus 242 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~-------~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~ 313 (515)
+..++++|++- .+|.+++||+.+.+....-..+.| -+. .....|..+.++.+| .-+++- .+|....|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~p-ll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~l-sng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAP-LLNSSPVSDKSSSPNITSCSLTSNG-VPIVTL-SNGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHH-HhcccccccCCCCCcEEEEEEcCCC-CEEEEE-eCCCEEEecc
Confidence 34567777776 899999999998776544322222 111 356778899999888 555544 4578888887
Q ss_pred Ccc
Q 010206 314 RQS 316 (515)
Q Consensus 314 ~~~ 316 (515)
.-+
T Consensus 95 ~L~ 97 (219)
T PF07569_consen 95 DLG 97 (219)
T ss_pred ccc
Confidence 654
No 423
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=89.55 E-value=20 Score=34.34 Aligned_cols=98 Identities=22% Similarity=0.279 Sum_probs=59.4
Q ss_pred CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCC
Q 010206 253 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 332 (515)
Q Consensus 253 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 332 (515)
++..|.-.|.+.......+...+ .+. ......+..-..+| +++.++..|-|++||.-.-..
T Consensus 535 S~~svFrIDPR~~gNKi~v~esK--dY~-tKn~Fss~~tTesG--yIa~as~kGDirLyDRig~rA-------------- 595 (776)
T COG5167 535 SDYSVFRIDPRARGNKIKVVESK--DYK-TKNKFSSGMTTESG--YIAAASRKGDIRLYDRIGKRA-------------- 595 (776)
T ss_pred cccceEEecccccCCceeeeeeh--hcc-ccccccccccccCc--eEEEecCCCceeeehhhcchh--------------
Confidence 66666666766544322221111 000 12222333333444 899999999999999532211
Q ss_pred CccccccccccceeEEEEccCCCEEEEEcCCeEEEEEee
Q 010206 333 GTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN 371 (515)
Q Consensus 333 ~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~ 371 (515)
+..+.+....|..+..+.+|+++++.....+-+-|+.
T Consensus 596 --KtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 596 --KTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred --hhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 1123444468999999999999988777788888875
No 424
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=89.08 E-value=4.3 Score=33.28 Aligned_cols=30 Identities=13% Similarity=0.153 Sum_probs=24.4
Q ss_pred ceeeEEEcCCC------CEEEEecCCCcEEEEecCC
Q 010206 401 DKFECCLSGDG------GRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 401 ~v~~~~~s~~~------~~l~s~s~dg~i~iw~~~~ 430 (515)
.+.+++|||-| .+|++.+.++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 46689999954 3788999999999998763
No 425
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=89.04 E-value=2.3 Score=39.56 Aligned_cols=107 Identities=12% Similarity=0.166 Sum_probs=58.0
Q ss_pred CCCEEEEe-CCCcEEEE-eCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccc
Q 010206 245 DGETFISA-DDLRINLW-NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH 322 (515)
Q Consensus 245 ~~~~l~s~-~d~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 322 (515)
.+.-|..+ .||.|.-| |++..... .+.-.+ .+.-...++.-+.-..+. +-+++-+..|++.++.....+...
T Consensus 279 Gg~SLLv~~~dG~vsQWFdvr~~~~p-~l~h~R--~f~l~pa~~~~l~pe~~r-kgF~~l~~~G~L~~f~st~~~~lL-- 352 (733)
T COG4590 279 GGFSLLVVHEDGLVSQWFDVRRDGQP-HLNHIR--NFKLAPAEVQFLLPETNR-KGFYSLYRNGTLQSFYSTSEKLLL-- 352 (733)
T ss_pred CceeEEEEcCCCceeeeeeeecCCCC-cceeee--ccccCcccceeecccccc-ceEEEEcCCCceeeeecccCccee--
Confidence 34456666 78888877 66544332 110000 111111222222222222 456666777777766543332211
Q ss_pred cceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeC
Q 010206 323 SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM 372 (515)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~ 372 (515)
+..--..+.-+++||.+.++++-+.|.++++.+++
T Consensus 353 ---------------~~~~~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~N 387 (733)
T COG4590 353 ---------------FERAYQAPQLVAMSPNQAYLLSEDQGKIRLAQLEN 387 (733)
T ss_pred ---------------hhhhhcCcceeeeCcccchheeecCCceEEEEecC
Confidence 01111346678999999999998779999999985
No 426
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=88.78 E-value=27 Score=34.79 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=22.0
Q ss_pred cCCC--cEEEEEecCCeEEEEecCccccc
Q 010206 293 PTHC--NMLAYSSSKGSIRLIDMRQSALC 319 (515)
Q Consensus 293 p~~~--~~l~~~~~dg~i~~wd~~~~~~~ 319 (515)
.+|. ..++.+..+|.+.+.|.++++.+
T Consensus 310 ~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 310 KDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 4552 37889999999999999999865
No 427
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.65 E-value=18 Score=39.01 Aligned_cols=81 Identities=17% Similarity=0.290 Sum_probs=52.9
Q ss_pred cCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCC-----ccccee-------cccC--cccc-ccCCceEEEEEecCCCcE
Q 010206 234 DYHINSISNNSDGETFISADDLRINLWNLEISN-----QSFNIV-------DVKP--ANME-DLTEVITSAEFHPTHCNM 298 (515)
Q Consensus 234 ~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~-----~~~~~~-------~~~~--~~~~-~~~~~i~~i~~~p~~~~~ 298 (515)
...|+|+....+|+.|.+|.||.|.-.-..... .+.++. .+-| .++. .+.++|..++....- .+
T Consensus 178 g~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR-~I 256 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR-NI 256 (1311)
T ss_pred CceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc-ce
Confidence 356788888889999999966644322222111 010000 0011 1223 567899999998876 78
Q ss_pred EEEEecCCeEEEEecCc
Q 010206 299 LAYSSSKGSIRLIDMRQ 315 (515)
Q Consensus 299 l~~~~~dg~i~~wd~~~ 315 (515)
+.+-+..|.|..||+..
T Consensus 257 lY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 257 LYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeeeccCceEEEEEccC
Confidence 99999999999999976
No 428
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.19 E-value=8.3 Score=32.42 Aligned_cols=102 Identities=12% Similarity=0.095 Sum_probs=63.7
Q ss_pred CEEEEecCCCcEEEEecCCCC-cceeeeccCCCceeeEEECCCCCeeEeecCC---C---eEEEecCCCCC-------cc
Q 010206 412 GRVATGSYSNLFRVFGCSEGS-AESTTLEASKNPMRRQVQTPSRPSRPLGSLS---G---VVRRVKGADNS-------AL 477 (515)
Q Consensus 412 ~~l~s~s~dg~i~iw~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---~---~v~l~~~~~~~-------~~ 477 (515)
+.|+.+...+.|.+|++.... .+..++..- +.|..+.++..|.+|++-=.+ . .+|++-.|... ..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455444666789999998433 333444433 788899999999999876333 2 45551122111 10
Q ss_pred ccCC---------------c--cccccCCeeEEEEcCCCCEEEEEcCCcEEEEe
Q 010206 478 DANG---------------N--AFDFSMKLLHLAWHPSENSIACAASNSLYMYY 514 (515)
Q Consensus 478 ~~~~---------------~--~~~~~~~i~~~~~s~~~~~la~~~~~~~~i~~ 514 (515)
.+.+ . -+.....+.+++-.|-..-|++|+.+.+.||.
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~ 161 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFT 161 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEE
Confidence 0011 0 01124577899999988888999999999986
No 429
>PHA02713 hypothetical protein; Provisional
Probab=88.14 E-value=17 Score=36.54 Aligned_cols=64 Identities=6% Similarity=0.091 Sum_probs=35.0
Q ss_pred CCCEEEEe-CC------CcEEEEeCCC-CCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCC--eEEEEecC
Q 010206 245 DGETFISA-DD------LRINLWNLEI-SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG--SIRLIDMR 314 (515)
Q Consensus 245 ~~~~l~s~-~d------~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg--~i~~wd~~ 314 (515)
+++..+.| .+ ..+..||+++ .+... + ..+.........+++ ++ .+.+.|+.++ .+..||..
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~-~-----~~m~~~r~~~~~~~~--~~-~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWEL-I-----TTTESRLSALHTILH--DN-TIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeE-c-----cccCcccccceeEEE--CC-EEEEEeeecceeehhhcCcc
Confidence 45666665 32 2467889886 33221 1 022222222222222 45 7899999888 67777777
Q ss_pred ccc
Q 010206 315 QSA 317 (515)
Q Consensus 315 ~~~ 317 (515)
+.+
T Consensus 534 ~~~ 536 (557)
T PHA02713 534 TYE 536 (557)
T ss_pred ccc
Confidence 654
No 430
>PRK10115 protease 2; Provisional
Probab=88.03 E-value=5.9 Score=40.84 Aligned_cols=100 Identities=4% Similarity=-0.029 Sum_probs=57.0
Q ss_pred ceeEEEEccCCCEEEEE-----cC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEe
Q 010206 344 SISDIKFARNGRHILSR-----DY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 417 (515)
Q Consensus 344 ~i~~~~~s~~~~~l~s~-----~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 417 (515)
.+..+.+||||++|+.+ ++ ..|++.|+.+ +..+........ ..++|++|++.|+..
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~t-g~~l~~~i~~~~-----------------~~~~w~~D~~~~~y~ 189 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLET-GNWYPELLDNVE-----------------PSFVWANDSWTFYYV 189 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCC-CCCCCccccCcc-----------------eEEEEeeCCCEEEEE
Confidence 46778899999999864 33 5788888875 432211111100 268999999877655
Q ss_pred cCC------CcEEEEecCCCCcc-eeeeccCCCcee-eEEECCCCCeeEeec
Q 010206 418 SYS------NLFRVFGCSEGSAE-STTLEASKNPMR-RQVQTPSRPSRPLGS 461 (515)
Q Consensus 418 s~d------g~i~iw~~~~~~~~-~~~~~~~~~~v~-~~~~~~~~~~l~s~~ 461 (515)
..+ ..|+.+++.++... ...++....... ....+.++++++..+
T Consensus 190 ~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~ 241 (686)
T PRK10115 190 RKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHL 241 (686)
T ss_pred EecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEE
Confidence 432 36788888876322 233333222232 333344676654433
No 431
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=87.93 E-value=20 Score=32.31 Aligned_cols=154 Identities=10% Similarity=0.115 Sum_probs=79.3
Q ss_pred cEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCC-----cEEEEEecCCeEEEEecCcccccccccceeeecc
Q 010206 256 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC-----NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 330 (515)
Q Consensus 256 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~-----~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 330 (515)
.|.+||+.+.+. .+.+.+.+.... ..+.+..+++....+ ...++=...+.|.++|+.+++...- ....-
T Consensus 35 KLv~~Dl~t~~l-i~~~~~p~~~~~-~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv----~~~~~ 108 (287)
T PF03022_consen 35 KLVAFDLKTNQL-IRRYPFPPDIAP-PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRV----LHNSF 108 (287)
T ss_dssp EEEEEETTTTCE-EEEEE--CCCS--TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEE----ETCGC
T ss_pred EEEEEECCCCcE-EEEEECChHHcc-cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEE----ecCCc
Confidence 566777776653 333333322222 356678888876321 2333444456899999998764211 11111
Q ss_pred CCCc--ccc-c----cccccceeEEEEcc---CCCEEEEEcCCeEEEEEeeCC----CC---------CeeeEeeecccc
Q 010206 331 APGT--RSF-F----TEIIASISDIKFAR---NGRHILSRDYMTLKLWDINMD----SG---------PVATFQVHEHLR 387 (515)
Q Consensus 331 ~~~~--~~~-~----~~~~~~i~~~~~s~---~~~~l~s~~~~~i~iwd~~~~----~~---------~~~~~~~~~~~~ 387 (515)
.+.+ ..+ . -.....+..++.+| +++.|+-..-..-++|.+.+. .. .++.+ +....
T Consensus 109 ~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~- 186 (287)
T PF03022_consen 109 SPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGS- 186 (287)
T ss_dssp TTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE----
T ss_pred ceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceec-cccCC-
Confidence 1110 000 0 01123477778876 777777654333455555430 00 01111 11000
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCC
Q 010206 388 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 388 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~ 430 (515)
..-.++++++|.++++--..+.|..|+...
T Consensus 187 -------------~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 187 -------------QSDGMAIDPNGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp -------------SECEEEEETTTEEEEEECCCTEEEEEETTT
T ss_pred -------------CCceEEECCCCcEEEecCCCCeEEEEeCCC
Confidence 012688999999999988999999999885
No 432
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=87.85 E-value=26 Score=35.26 Aligned_cols=57 Identities=7% Similarity=0.129 Sum_probs=34.4
Q ss_pred CCCEEEEecCCC-----cEEEEecCCCCcceee-eccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 410 DGGRVATGSYSN-----LFRVFGCSEGSAESTT-LEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 410 ~~~~l~s~s~dg-----~i~iw~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
++.+.+.|+.|+ +|..||..+.+..... +......+... .-+++..+.|+.||.-++
T Consensus 475 ~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~--~~~~~ly~vGG~~~~~~l 537 (571)
T KOG4441|consen 475 NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV--VLGGKLYAVGGFDGNNNL 537 (571)
T ss_pred CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE--EECCEEEEEecccCcccc
Confidence 677777888776 3677888876544321 22222222222 236677888888887776
No 433
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=87.78 E-value=23 Score=32.80 Aligned_cols=70 Identities=11% Similarity=0.022 Sum_probs=38.2
Q ss_pred cceeEEEEcc-------CCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEE
Q 010206 343 ASISDIKFAR-------NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 414 (515)
Q Consensus 343 ~~i~~~~~s~-------~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 414 (515)
..+..+.|.. +|.++++.-. +.|....+...+........-. +.-..+..+++.|||.++
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------------~~~~r~~~v~~~pDG~Ly 320 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLG------------GFGGRPRDVAQGPDGALY 320 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECT------------TSSS-EEEEEEETTSEEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccc------------cCCCCceEEEEcCCCeEE
Confidence 5666777763 4556665543 7777777764222111111001 111124589999999998
Q ss_pred EEecCCCcEE
Q 010206 415 ATGSYSNLFR 424 (515)
Q Consensus 415 ~s~s~dg~i~ 424 (515)
++-+.+|.|+
T Consensus 321 v~~d~~G~iy 330 (331)
T PF07995_consen 321 VSDDSDGKIY 330 (331)
T ss_dssp EEE-TTTTEE
T ss_pred EEECCCCeEe
Confidence 8888888774
No 434
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=87.71 E-value=17 Score=34.73 Aligned_cols=139 Identities=13% Similarity=0.056 Sum_probs=82.4
Q ss_pred cCCCEEEE-EcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCC--------CCEEEEecCCC
Q 010206 352 RNGRHILS-RDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD--------GGRVATGSYSN 421 (515)
Q Consensus 352 ~~~~~l~s-~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--------~~~l~s~s~dg 421 (515)
.+..+|+. |.. ..++-.|+.. ++.+..+..+... -+.|.|+ .+.|+.-|. .
T Consensus 477 ~dssli~~dg~~~~kLykmDIEr-GkvveeW~~~ddv-----------------vVqy~p~~kf~qmt~eqtlvGlS~-~ 537 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIER-GKVVEEWDLKDDV-----------------VVQYNPYFKFQQMTDEQTLVGLSD-Y 537 (776)
T ss_pred CCcceEEecCCCcccceeeeccc-ceeeeEeecCCcc-----------------eeecCCchhHHhcCccceEEeecc-c
Confidence 35556665 444 7788888886 8888888877654 3455554 234554444 4
Q ss_pred cEEEEecCCCCcceeeec----cCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcC
Q 010206 422 LFRVFGCSEGSAESTTLE----ASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHP 497 (515)
Q Consensus 422 ~i~iw~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 497 (515)
.|.-.|.+..+..+...+ .......+.. .-...++|.+|.-|-|||++--... ....+.+....|..+..+.
T Consensus 538 svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~-tTesGyIa~as~kGDirLyDRig~r---AKtalP~lG~aIk~idvta 613 (776)
T COG5167 538 SVFRIDPRARGNKIKVVESKDYKTKNKFSSGM-TTESGYIAAASRKGDIRLYDRIGKR---AKTALPGLGDAIKHIDVTA 613 (776)
T ss_pred ceEEecccccCCceeeeeehhccccccccccc-cccCceEEEecCCCceeeehhhcch---hhhcCcccccceeeeEeec
Confidence 444445554433322221 1112222222 2345689999999999992211110 1112234678999999999
Q ss_pred CCCEEEEEcCCcEEEE
Q 010206 498 SENSIACAASNSLYMY 513 (515)
Q Consensus 498 ~~~~la~~~~~~~~i~ 513 (515)
+|++|.+.+.+-+.+-
T Consensus 614 ~Gk~ilaTCk~yllL~ 629 (776)
T COG5167 614 NGKHILATCKNYLLLT 629 (776)
T ss_pred CCcEEEEeecceEEEE
Confidence 9999999988776653
No 435
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=87.18 E-value=9.2 Score=36.27 Aligned_cols=37 Identities=24% Similarity=0.173 Sum_probs=31.8
Q ss_pred ccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcc
Q 010206 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRD 69 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~ 69 (515)
.....+.+++.+|++++.|+.+.-|+|.|+|+.++..
T Consensus 305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v 341 (415)
T PF14655_consen 305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIV 341 (415)
T ss_pred cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh
Confidence 3456789999999999999988889999999987764
No 436
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=86.76 E-value=9.9 Score=31.18 Aligned_cols=34 Identities=18% Similarity=0.363 Sum_probs=25.7
Q ss_pred ceeEEEEEeecC---C-CcEEEeeeCCCeEEEEEccCC
Q 010206 113 EKINKIRWCQSA---N-SALYLLSTNDKTIKLWKVQEK 146 (515)
Q Consensus 113 ~~v~~l~~~~~~---~-~~~l~~~~~d~~i~iwd~~~~ 146 (515)
..|.+++|+|.. + +-+|++.+.++.|.+|.....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 379999998832 2 346777799999999987743
No 437
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=86.75 E-value=26 Score=32.35 Aligned_cols=171 Identities=12% Similarity=0.128 Sum_probs=82.4
Q ss_pred CCceEEEEEecCCCcEEEEEecCCe------EEEEecCcccccccccceeeeccCCCc-cccccccccceeEEEEccCCC
Q 010206 283 TEVITSAEFHPTHCNMLAYSSSKGS------IRLIDMRQSALCDTHSKLFEEQEAPGT-RSFFTEIIASISDIKFARNGR 355 (515)
Q Consensus 283 ~~~i~~i~~~p~~~~~l~~~~~dg~------i~~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~ 355 (515)
-+.+..+.+.|++ ..+++-+.+|. +..+++.........+........... -..+..-.-...+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~-~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDD-GRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCC-CEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 4567889998765 45566666666 555554431100000000000000000 000111112455778877888
Q ss_pred EEEEEcC-------CeEEEEEeeCCCCCeeeEeeeccccccc---cccccCCCccceeeEEEcCCCCEEEEecC-----C
Q 010206 356 HILSRDY-------MTLKLWDINMDSGPVATFQVHEHLRPKL---CDLYENDSIFDKFECCLSGDGGRVATGSY-----S 420 (515)
Q Consensus 356 ~l~s~~~-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~s~s~-----d 420 (515)
++++... ..|.-++.. ++....+..+....... .....|.. .-+++++|||+.|+++.+ |
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G---~E~la~~~dG~~l~~~~E~~l~~d 172 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRG---FEGLAVSPDGRTLFAAMESPLKQD 172 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCC---eEEEEECCCCCEEEEEECccccCC
Confidence 8777432 345555543 66666554333221111 11222333 338999999996665432 2
Q ss_pred C--c-------EEE--EecCCCCcce----eeecc-----CCCceeeEEECCCCCeeEe
Q 010206 421 N--L-------FRV--FGCSEGSAES----TTLEA-----SKNPMRRQVQTPSRPSRPL 459 (515)
Q Consensus 421 g--~-------i~i--w~~~~~~~~~----~~~~~-----~~~~v~~~~~~~~~~~l~s 459 (515)
+ . +++ ||..+.+... ..+.. ....+..+.+.+++++|+.
T Consensus 173 ~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 173 GPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred CcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 2 1 444 5555422111 22222 3566788888899887654
No 438
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=86.25 E-value=0.12 Score=47.97 Aligned_cols=138 Identities=9% Similarity=0.053 Sum_probs=90.1
Q ss_pred CceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEE-EcC
Q 010206 284 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-RDY 362 (515)
Q Consensus 284 ~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s-~~~ 362 (515)
...-...|.|.+ .-++.++.+..+..||-..... .+ .. .++....++|..++..++. +..
T Consensus 35 v~pi~~~w~~e~-~nlavaca~tiv~~YD~agq~~-le------~n-----------~tg~aldm~wDkegdvlavlAek 95 (615)
T KOG2247|consen 35 VGPIIHRWRPEG-HNLAVACANTIVIYYDKAGQVI-LE------LN-----------PTGKALDMAWDKEGDVLAVLAEK 95 (615)
T ss_pred cccceeeEecCC-CceehhhhhhHHHhhhhhccee-cc------cC-----------CchhHhhhhhccccchhhhhhhc
Confidence 334566788887 5588888888899998544321 11 00 1134566788888877766 343
Q ss_pred -CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccC
Q 010206 363 -MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS 441 (515)
Q Consensus 363 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~ 441 (515)
+.+.+||+.+.....-.+.+.... .-+.|++....++.|...|.+.|++..+. ........|
T Consensus 96 ~~piylwd~n~eytqqLE~gg~~s~----------------sll~wsKg~~el~ig~~~gn~viynhgts-R~iiv~Gkh 158 (615)
T KOG2247|consen 96 TGPIYLWDVNSEYTQQLESGGTSSK----------------SLLAWSKGTPELVIGNNAGNIVIYNHGTS-RRIIVMGKH 158 (615)
T ss_pred CCCeeechhhhhhHHHHhccCcchH----------------HHHhhccCCccccccccccceEEEeccch-hhhhhhccc
Confidence 899999998522211111111110 03678998888999989999999998875 333445558
Q ss_pred CCceeeEEECCCCCee
Q 010206 442 KNPMRRQVQTPSRPSR 457 (515)
Q Consensus 442 ~~~v~~~~~~~~~~~l 457 (515)
...+.++++.+.+..+
T Consensus 159 ~RRgtq~av~lEd~vi 174 (615)
T KOG2247|consen 159 QRRGTQIAVTLEDYVI 174 (615)
T ss_pred ccceeEEEecccceee
Confidence 8889999998876544
No 439
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=86.24 E-value=20 Score=30.55 Aligned_cols=97 Identities=6% Similarity=0.094 Sum_probs=63.1
Q ss_pred eeEEEEccCCCEEEEEcC--CeEEEEEeeCC-C-----CCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEE
Q 010206 345 ISDIKFARNGRHILSRDY--MTLKLWDINMD-S-----GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT 416 (515)
Q Consensus 345 i~~~~~s~~~~~l~s~~~--~~i~iwd~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 416 (515)
-+.++|+.+.+.+..-+. -.|.-||..-+ + +.+..++....... ...+ .+++..+|++.++
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~-----~~PD------Gm~ID~eG~L~Va 228 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFES-----LEPD------GMTIDTEGNLYVA 228 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCC-----CCCC------cceEccCCcEEEE
Confidence 467889888887776543 56767884321 1 22222222111100 0001 5677889998888
Q ss_pred ecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCC
Q 010206 417 GSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS 453 (515)
Q Consensus 417 ~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~ 453 (515)
.-+.++|...|..+| +++++++-....+++.+|-..
T Consensus 229 ~~ng~~V~~~dp~tG-K~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 229 TFNGGTVQKVDPTTG-KILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred EecCcEEEEECCCCC-cEEEEEEcCCCceEEEEecCC
Confidence 888899999999998 565777777888999999543
No 440
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.47 E-value=21 Score=33.72 Aligned_cols=103 Identities=11% Similarity=0.145 Sum_probs=63.3
Q ss_pred cceeEEEEccCCCEEEEE-cCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCC
Q 010206 343 ASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 421 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg 421 (515)
++|.++.||+|.+.||.- ++..|.+++... .++...+. |..... + ..|...+|+.. .-+|.-+..|
T Consensus 67 G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~-d~~~l~~~-~~ck~k-------~---~~IlGF~W~~s-~e~A~i~~~G 133 (657)
T KOG2377|consen 67 GEIKSIKFSLDNKILAVQRTSKTVDFCNFIP-DNSQLEYT-QECKTK-------N---ANILGFCWTSS-TEIAFITDQG 133 (657)
T ss_pred CceeEEEeccCcceEEEEecCceEEEEecCC-CchhhHHH-HHhccC-------c---ceeEEEEEecC-eeEEEEecCC
Confidence 689999999999999984 569999999853 22222111 110000 0 01447888855 4455544433
Q ss_pred cEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEe
Q 010206 422 LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPL 459 (515)
Q Consensus 422 ~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 459 (515)
+-+|.....+..+...+.|.-.|+--++.++-+.++-
T Consensus 134 -~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL 170 (657)
T KOG2377|consen 134 -IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILL 170 (657)
T ss_pred -eEEEEEchhhhhhhhhhhcccCccEEEEccccceEee
Confidence 5666665444444556677777777788887765433
No 441
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.86 E-value=48 Score=33.68 Aligned_cols=38 Identities=18% Similarity=0.228 Sum_probs=29.5
Q ss_pred cceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEe
Q 010206 343 ASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQ 381 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~ 381 (515)
+.+..+..||+.++|+--.+ |.|.+-+.+. .+.+..+.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~-~~~lce~~ 255 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDL-SQILCEFN 255 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecch-hhhhhccC
Confidence 56788999999999998665 8888888875 55555554
No 442
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=84.27 E-value=58 Score=34.20 Aligned_cols=75 Identities=13% Similarity=0.100 Sum_probs=48.8
Q ss_pred cCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce----ecccC-ccc--cc----cCCceEEEEEecCCCcEEEE
Q 010206 234 DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI----VDVKP-ANM--ED----LTEVITSAEFHPTHCNMLAY 301 (515)
Q Consensus 234 ~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~----~~~~~-~~~--~~----~~~~i~~i~~~p~~~~~l~~ 301 (515)
...|.+++...-+..++.. +||+|.++|..+.+..... ..... .++ .+ .-..+..++|||++ ..++.
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~-c~~v~ 337 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTM-CSLVQ 337 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECccc-ceEEE
Confidence 4668888877777788888 9999999998877554332 00000 000 00 11234468899998 67777
Q ss_pred EecCCeEE
Q 010206 302 SSSKGSIR 309 (515)
Q Consensus 302 ~~~dg~i~ 309 (515)
-..+|.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 88888866
No 443
>PRK13684 Ycf48-like protein; Provisional
Probab=84.10 E-value=36 Score=31.59 Aligned_cols=103 Identities=17% Similarity=0.063 Sum_probs=58.0
Q ss_pred eeeEEEcCCCCEEEEecCCCcEEEEecCCCCcce-eeeccCCCceeeEEECCCCCeeEeecCCCeEEE--ecCCCCCccc
Q 010206 402 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES-TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR--VKGADNSALD 478 (515)
Q Consensus 402 v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l--~~~~~~~~~~ 478 (515)
+..+.+.|++.+++++.. |.+.. ....+...- .........++.+.+.++++.++.+ ..|.+++ .++...+...
T Consensus 175 ~~~i~~~~~g~~v~~g~~-G~i~~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~ 251 (334)
T PRK13684 175 VRNLRRSPDGKYVAVSSR-GNFYS-TWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKP 251 (334)
T ss_pred EEEEEECCCCeEEEEeCC-ceEEE-EcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccc
Confidence 347888999877766554 54432 111221111 1122334677889999999877665 4677766 2344444211
Q ss_pred cCCccccccCCeeEEEEcCCCCEEEEEcCC
Q 010206 479 ANGNAFDFSMKLLHLAWHPSENSIACAASN 508 (515)
Q Consensus 479 ~~~~~~~~~~~i~~~~~s~~~~~la~~~~~ 508 (515)
......-...+.++++.|++..++++...
T Consensus 252 -~~~~~~~~~~l~~v~~~~~~~~~~~G~~G 280 (334)
T PRK13684 252 -IIPEITNGYGYLDLAYRTPGEIWAGGGNG 280 (334)
T ss_pred -cCCccccccceeeEEEcCCCCEEEEcCCC
Confidence 10001112457899999988877766543
No 444
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=84.07 E-value=70 Score=34.95 Aligned_cols=38 Identities=11% Similarity=0.284 Sum_probs=22.1
Q ss_pred eEEEEccCCCEEEEEcC-CeE-EEEEeeCCCCCeeeEeeec
Q 010206 346 SDIKFARNGRHILSRDY-MTL-KLWDINMDSGPVATFQVHE 384 (515)
Q Consensus 346 ~~~~~s~~~~~l~s~~~-~~i-~iwd~~~~~~~~~~~~~~~ 384 (515)
.+++++++|.+.++-+| ..| ++=.+.+ ...+..+.+..
T Consensus 596 r~Iavg~~G~lyvaEsD~rriNrvr~~~t-dg~i~ilaGa~ 635 (1899)
T KOG4659|consen 596 RDIAVGTDGALYVAESDGRRINRVRKLST-DGTISILAGAK 635 (1899)
T ss_pred hceeecCCceEEEEeccchhhhheEEecc-CceEEEecCCC
Confidence 78899999988887555 322 2223333 23555555443
No 445
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=84.06 E-value=29 Score=30.51 Aligned_cols=193 Identities=12% Similarity=0.104 Sum_probs=96.7
Q ss_pred ceEEEEECCCCCeEEeecCCC--eEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccce
Q 010206 37 IISAIEFDKSGDHLATGDRGG--RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (515)
Q Consensus 37 ~v~~v~~s~~g~~lasg~~dg--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (515)
-...+.|..+|.++-+.+.-| .|+.+|+.+++... ...+... --
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~---------------------~~~l~~~-------------~F 91 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQ---------------------SVPLPPR-------------YF 91 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEE---------------------EEE-TTT---------------
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEE---------------------EEECCcc-------------cc
Confidence 456678877888777777665 78999998876431 0111110 00
Q ss_pred eEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCC
Q 010206 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (515)
Q Consensus 115 v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~ 194 (515)
=..++.. . +..+...=.++...+||..+-+......+... .=-...||+.|
T Consensus 92 gEGit~~--~-d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~E------------------GWGLt~dg~~L-------- 142 (264)
T PF05096_consen 92 GEGITIL--G-DKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGE------------------GWGLTSDGKRL-------- 142 (264)
T ss_dssp EEEEEEE--T-TEEEEEESSSSEEEEEETTTTEEEEEEE-SSS--------------------EEEECSSCE--------
T ss_pred ceeEEEE--C-CEEEEEEecCCeEEEEccccceEEEEEecCCc------------------ceEEEcCCCEE--------
Confidence 1112221 1 23333344678899999998776666554421 11223566666
Q ss_pred CCCCCCCCCcccEEeeeeeecccccccccceeeeee-ccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccccee
Q 010206 195 NDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYA-HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 272 (515)
Q Consensus 195 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 272 (515)
+....+..+.++| ..+.+. ........ ...-..++.+.+- +|...|=. ....|...|..++... ..+
T Consensus 143 ----i~SDGS~~L~~~d--P~~f~~---~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~-~~i 211 (264)
T PF05096_consen 143 ----IMSDGSSRLYFLD--PETFKE---VRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVV-GWI 211 (264)
T ss_dssp ----EEE-SSSEEEEE---TTT-SE---EEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEE-EEE
T ss_pred ----EEECCccceEEEC--Ccccce---EEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEE-EEE
Confidence 6666667777766 221111 11111111 1112345566664 55544445 5667777788776532 222
Q ss_pred cccC---c-----cccccCCceEEEEEecCCCcEEEEEe
Q 010206 273 DVKP---A-----NMEDLTEVITSAEFHPTHCNMLAYSS 303 (515)
Q Consensus 273 ~~~~---~-----~~~~~~~~i~~i~~~p~~~~~l~~~~ 303 (515)
++.. . ......+-.+.||+.|...+++++|=
T Consensus 212 Dls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 212 DLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp E-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 2211 0 00111456789999998856666653
No 446
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=83.90 E-value=32 Score=30.84 Aligned_cols=222 Identities=10% Similarity=0.075 Sum_probs=109.0
Q ss_pred CceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeecc-----CcCCeEEEEecCCCC---
Q 010206 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHA-----HDYHINSISNNSDGE--- 247 (515)
Q Consensus 176 ~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~--- 247 (515)
.++++|.+..- ++....+...+|| .......-........+.. .....+.+.|+....
T Consensus 27 Gia~~p~~~~W------------VadngT~~~TlYd--g~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~v 92 (336)
T TIGR03118 27 GLSYRPGGPFW------------VANTGTGTATLYV--GNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVV 92 (336)
T ss_pred eeEecCCCCEE------------EecCCcceEEeec--CCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEE
Confidence 56777777554 6666777888888 3211000011111111111 123466666664322
Q ss_pred ----------EEEEeCCCcEEEEeCCCCCcc--cceecccCcccc-ccCCce-EEEEEecC--CCcEEEEEecCCeEEEE
Q 010206 248 ----------TFISADDLRINLWNLEISNQS--FNIVDVKPANME-DLTEVI-TSAEFHPT--HCNMLAYSSSKGSIRLI 311 (515)
Q Consensus 248 ----------~l~s~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~-~~~~~i-~~i~~~p~--~~~~l~~~~~dg~i~~w 311 (515)
+|.+.+||+|.-|...-.... ...+ .+. .....| ..+++... +..+.++--..++|.+|
T Consensus 93 t~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~-----~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVF 167 (336)
T TIGR03118 93 SGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEI-----VVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVF 167 (336)
T ss_pred cCCCcccceeEEEEeCCceEEeecCcCCcccccccEE-----EEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEe
Confidence 233448999999986432220 1111 111 112333 35565543 32344444558999999
Q ss_pred ecCcccccccccceeeeccCCC---cccccccccc--ceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecc
Q 010206 312 DMRQSALCDTHSKLFEEQEAPG---TRSFFTEIIA--SISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEH 385 (515)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~ 385 (515)
|-.-.+... ...|..+..+. +..+ ....+ .|+-..-.++++.=+.|.. |.|.+||+. ++.++++.....
T Consensus 168 d~~f~~~~~--~g~F~DP~iPagyAPFnI-qnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~--G~l~~r~as~g~ 242 (336)
T TIGR03118 168 KGSFRPPPL--PGSFIDPALPAGYAPFNV-QNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN--GQLLRRVASSGR 242 (336)
T ss_pred cCccccccC--CCCccCCCCCCCCCCcce-EEECCeEEEEEEecCCcccccccCCCcceEEEEcCC--CcEEEEeccCCc
Confidence 865443211 11222221111 0000 00000 1122222233333333434 899999997 888888753332
Q ss_pred ccccccccccCCCccceeeEEEcC------CCCEEEEecCCCcEEEEecCCCCcc
Q 010206 386 LRPKLCDLYENDSIFDKFECCLSG------DGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 386 ~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
. ..-+.++..| .|.+|+---.||+|..||..++..+
T Consensus 243 L-------------NaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~ 284 (336)
T TIGR03118 243 L-------------NAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQL 284 (336)
T ss_pred c-------------cCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCcee
Confidence 1 1123566544 4677777668999999999887544
No 447
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=83.49 E-value=42 Score=31.93 Aligned_cols=155 Identities=9% Similarity=0.089 Sum_probs=80.6
Q ss_pred eEEEEecCCCCEEEEeCCCcEE-EEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCc
Q 010206 237 INSISNNSDGETFISADDLRIN-LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 315 (515)
Q Consensus 237 v~~~~~~~~~~~l~s~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~ 315 (515)
...+..++++.+++.+..|.+. -||-- ....+.. . ......+.++.+.+++ .+++++ ..|.+.. ....
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G--~~~W~~~-----~-~~~~~~l~~v~~~~dg-~l~l~g-~~G~l~~-S~d~ 309 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPG--QPYWQPH-----N-RASARRIQNMGWRADG-GLWLLT-RGGGLYV-SKGT 309 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCC--CcceEEe-----c-CCCccceeeeeEcCCC-CEEEEe-CCceEEE-ecCC
Confidence 4456677888888888555543 34432 1110100 1 1124567899999988 666544 5566433 3333
Q ss_pred ccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeecccccccccccc
Q 010206 316 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYE 395 (515)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (515)
+..- + ...|..... ..-...+.++.|.+++..+++|..|.+....- .++.-..........
T Consensus 310 G~~~-~-~~~f~~~~~-------~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D--~G~tW~~~~~~~~~~-------- 370 (398)
T PLN00033 310 GLTE-E-DFDFEEADI-------KSRGFGILDVGYRSKKEAWAAGGSGILLRSTD--GGKSWKRDKGADNIA-------- 370 (398)
T ss_pred CCcc-c-ccceeeccc-------CCCCcceEEEEEcCCCcEEEEECCCcEEEeCC--CCcceeEccccCCCC--------
Confidence 3210 0 001111110 00113588999999999999998886665532 244333322111100
Q ss_pred CCCccceeeEEEcCCCCEEEEecCCCcEEEE
Q 010206 396 NDSIFDKFECCLSGDGGRVATGSYSNLFRVF 426 (515)
Q Consensus 396 ~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw 426 (515)
.. .+.+.|.++++.+++| .+|.|.-|
T Consensus 371 -~~---ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 371 -AN---LYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred -cc---eeEEEEcCCCceEEEe-CCcEEEEe
Confidence 11 2378888777766654 55766544
No 448
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=83.05 E-value=0.34 Score=45.24 Aligned_cols=134 Identities=12% Similarity=0.071 Sum_probs=84.5
Q ss_pred CceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEE-e-C
Q 010206 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS-A-D 253 (515)
Q Consensus 176 ~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~-~ 253 (515)
...|.+.+..+ +.++.+..+..|| ..+ .........+....++|+-++..++. + .
T Consensus 39 ~~~w~~e~~nl------------avaca~tiv~~YD-----~ag------q~~le~n~tg~aldm~wDkegdvlavlAek 95 (615)
T KOG2247|consen 39 IHRWRPEGHNL------------AVACANTIVIYYD-----KAG------QVILELNPTGKALDMAWDKEGDVLAVLAEK 95 (615)
T ss_pred eeeEecCCCce------------ehhhhhhHHHhhh-----hhc------ceecccCCchhHhhhhhccccchhhhhhhc
Confidence 45666777766 7788888888777 111 00001123355667888888887776 4 6
Q ss_pred CCcEEEEeCCCCCcccceecccCccccc-cCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCC
Q 010206 254 DLRINLWNLEISNQSFNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 332 (515)
Q Consensus 254 d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 332 (515)
.+.+.+||+.+.... .++. ....-.=+.|++.. ..++.|...|.+.+|+..+.+....
T Consensus 96 ~~piylwd~n~eytq---------qLE~gg~~s~sll~wsKg~-~el~ig~~~gn~viynhgtsR~iiv----------- 154 (615)
T KOG2247|consen 96 TGPIYLWDVNSEYTQ---------QLESGGTSSKSLLAWSKGT-PELVIGNNAGNIVIYNHGTSRRIIV----------- 154 (615)
T ss_pred CCCeeechhhhhhHH---------HHhccCcchHHHHhhccCC-ccccccccccceEEEeccchhhhhh-----------
Confidence 899999999865432 1111 11111126788877 7788888999999999877543211
Q ss_pred CccccccccccceeEEEEccCCCEEE
Q 010206 333 GTRSFFTEIIASISDIKFARNGRHIL 358 (515)
Q Consensus 333 ~~~~~~~~~~~~i~~~~~s~~~~~l~ 358 (515)
...|...+.++++.+.+..+.
T Consensus 155 -----~Gkh~RRgtq~av~lEd~vil 175 (615)
T KOG2247|consen 155 -----MGKHQRRGTQIAVTLEDYVIL 175 (615)
T ss_pred -----hcccccceeEEEecccceeee
Confidence 122667788888888665544
No 449
>PHA02713 hypothetical protein; Provisional
Probab=82.01 E-value=40 Score=33.97 Aligned_cols=54 Identities=9% Similarity=0.023 Sum_probs=30.8
Q ss_pred CCCEEEEecCC------CcEEEEecCC-CCcce-eeeccCCCceeeEEECCCCCeeEeecCCCe
Q 010206 410 DGGRVATGSYS------NLFRVFGCSE-GSAES-TTLEASKNPMRRQVQTPSRPSRPLGSLSGV 465 (515)
Q Consensus 410 ~~~~l~s~s~d------g~i~iw~~~~-~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 465 (515)
++++.+.|+.+ ..+..||..+ .+... ..+..........++ +++..+.|+.|+.
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~ 524 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESY 524 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecce
Confidence 56666667654 2467899886 43332 333333333333333 6788888888873
No 450
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.96 E-value=31 Score=37.32 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=29.6
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEcccCcc
Q 010206 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRD 69 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~ 69 (515)
-......++|+|...++|.|...|.|++|-...-+.
T Consensus 34 ~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~ 69 (993)
T KOG1983|consen 34 FPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEF 69 (993)
T ss_pred CCCCCcceeeccccceEEEEEecccEEEecccceEE
Confidence 334567899999999999999999999998765443
No 451
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=81.12 E-value=4.9 Score=41.05 Aligned_cols=178 Identities=11% Similarity=0.128 Sum_probs=88.4
Q ss_pred eccCcCCeEEEEecC-CCCEEEEeCCCcEEEEeCCC--CCcccceecccCccccccCCceEEEEEe---cCCCcEEEEEe
Q 010206 230 AHAHDYHINSISNNS-DGETFISADDLRINLWNLEI--SNQSFNIVDVKPANMEDLTEVITSAEFH---PTHCNMLAYSS 303 (515)
Q Consensus 230 ~~~~~~~v~~~~~~~-~~~~l~s~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~i~~i~~~---p~~~~~l~~~~ 303 (515)
.++..+.|-.+.|-. +...+. -.-|.+.+||+.- ++...++. +.+. ......+.-+.|. ++. .++-.+-
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~-~~vg~lfVy~vd~l~G~iq~~l~-v~~~--~p~gs~~~~V~wcp~~~~~-~~ic~~~ 202 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR-RLVGELFVYDVDVLQGEIQPQLE-VTPI--TPYGSDPQLVSWCPIAVNK-VYICYGL 202 (1283)
T ss_pred HhcCCCCcccccccccCChHHH-HHhhhhheeehHhhccccccceE-Eeec--CcCCCCcceeeeccccccc-ceeeecc
Confidence 356667777777732 111111 1236778888753 22221111 1111 1112223444444 444 5666677
Q ss_pred cCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE-----------EEEccCCCEEEEE-cCCeEEEEEee
Q 010206 304 SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD-----------IKFARNGRHILSR-DYMTLKLWDIN 371 (515)
Q Consensus 304 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-----------~~~s~~~~~l~s~-~~~~i~iwd~~ 371 (515)
.++.|++........ .. +.+|...+.. -.+||||..++.+ +||.++.|.+.
T Consensus 203 ~~~~i~lL~~~ra~~-----~l------------~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 203 KGGEIRLLNINRALR-----SL------------FRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred CCCceeEeeechHHH-----HH------------HHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 788888876654321 11 2223222222 2378999999986 46888888775
Q ss_pred CCC----CCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEec-CCCcEEEEecCCCCcc
Q 010206 372 MDS----GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAE 434 (515)
Q Consensus 372 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s-~dg~i~iw~~~~~~~~ 434 (515)
-.+ +++...+.|+.. ++.|.+.++..+..| ++.+ -.++++++ .+..+++|.....+++
T Consensus 266 i~g~~~~rclhewkphd~~-p~vC~lc~~~~~~~v-~i~~---w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 266 ITGKIVHRCLHEWKPHDKH-PRVCWLCHKQEILVV-SIGK---WVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeccccHhhhhccCCCCCC-CceeeeeccccccCC-ccce---eEEEEecccCCcceeEeeccchhhh
Confidence 433 344555555532 233333332222211 1111 12455554 4567899987766555
No 452
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=80.41 E-value=71 Score=32.48 Aligned_cols=36 Identities=22% Similarity=0.440 Sum_probs=30.3
Q ss_pred ccccceEEEEECCCCCeEEeecCCCeEEEEEcccCc
Q 010206 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTR 68 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~ 68 (515)
....-++++.-+|.|.-++.+..||.|++|++...+
T Consensus 12 k~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~ 47 (1636)
T KOG3616|consen 12 KEDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRR 47 (1636)
T ss_pred cccceeeeeeecCCCceEEEEecCCcEEEEeecccc
Confidence 345668899999999999999999999999986544
No 453
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=80.20 E-value=57 Score=31.23 Aligned_cols=58 Identities=12% Similarity=0.055 Sum_probs=36.0
Q ss_pred EEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCc
Q 010206 248 TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 315 (515)
Q Consensus 248 ~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~ 315 (515)
+++.- -||.+.+++-+.---.. .+.. .--.-.+.|.+.. ..|++++.+..+.-|....
T Consensus 147 ~IcVQS~DG~L~~feqe~~~f~~--------~lp~-~llPgPl~Y~~~t-Dsfvt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 147 FICVQSMDGSLSFFEQESFAFSR--------FLPD-FLLPGPLCYCPRT-DSFVTASSSWTLECYKYQD 205 (418)
T ss_pred EEEEEecCceEEEEeCCcEEEEE--------EcCC-CCCCcCeEEeecC-CEEEEecCceeEEEecHHH
Confidence 34443 69999999876332111 1111 1112346777776 7899999999999887643
No 454
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=80.01 E-value=41 Score=29.57 Aligned_cols=178 Identities=14% Similarity=0.024 Sum_probs=98.4
Q ss_pred CCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC---------
Q 010206 235 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--------- 305 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d--------- 305 (515)
.....+...||+..-++-....|.-.|.++.+.. .+.+ ..+.-........|.+.| ++-+++...
T Consensus 104 a~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt--~f~l---p~~~a~~nlet~vfD~~G-~lWFt~q~G~yGrLdPa~ 177 (353)
T COG4257 104 ASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVT--RFPL---PLEHADANLETAVFDPWG-NLWFTGQIGAYGRLDPAR 177 (353)
T ss_pred CCCceEEECCCCCeeEecCcceeEEecCcccceE--Eeec---ccccCCCcccceeeCCCc-cEEEeeccccceecCccc
Confidence 3344566667766555532224444454433211 1111 122335567788899998 777776531
Q ss_pred CeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeec
Q 010206 306 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHE 384 (515)
Q Consensus 306 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~ 384 (515)
+.|++|+...+ ..-+.|+..|+|..-++.-. +.|-..|... + .-..+....
T Consensus 178 ~~i~vfpaPqG--------------------------~gpyGi~atpdGsvwyaslagnaiaridp~~-~-~aev~p~P~ 229 (353)
T COG4257 178 NVISVFPAPQG--------------------------GGPYGICATPDGSVWYASLAGNAIARIDPFA-G-HAEVVPQPN 229 (353)
T ss_pred CceeeeccCCC--------------------------CCCcceEECCCCcEEEEeccccceEEccccc-C-CcceecCCC
Confidence 33444444333 24577889999998877432 4555556543 2 222222222
Q ss_pred cccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeE
Q 010206 385 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP 458 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 458 (515)
..... ...+-.+|.|+.-+|-...+.++.||..+.......|.+....-.++.+...++.-.
T Consensus 230 ~~~~g------------sRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~ 291 (353)
T COG4257 230 ALKAG------------SRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWL 291 (353)
T ss_pred ccccc------------ccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEe
Confidence 11110 114556778888888778889999988876655566666655555666655554433
No 455
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=79.90 E-value=8.3 Score=22.28 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=21.4
Q ss_pred cCCCEEEEEc-C-CeEEEEEeeCCCCCeeeEee
Q 010206 352 RNGRHILSRD-Y-MTLKLWDINMDSGPVATFQV 382 (515)
Q Consensus 352 ~~~~~l~s~~-~-~~i~iwd~~~~~~~~~~~~~ 382 (515)
|+++.|++++ . +.|.++|..+ .+.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~-~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTAT-NKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCC-CeEEEEEEC
Confidence 5777777754 3 8999999975 666666554
No 456
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=79.74 E-value=26 Score=33.84 Aligned_cols=30 Identities=10% Similarity=0.090 Sum_probs=25.2
Q ss_pred eeeEEEcCCCCEEEEecCCCcEEEEecCCC
Q 010206 402 KFECCLSGDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 402 v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
+.+++..+..+.|++.+.+|.|.+|++..+
T Consensus 192 I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 192 IVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred eeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 568999999999999999999999999853
No 457
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.66 E-value=33 Score=37.16 Aligned_cols=86 Identities=13% Similarity=0.117 Sum_probs=51.6
Q ss_pred cceeEEEEccCCCEEEEEcCCeEEEEEeeCC------CC-CeeeEeeec---cccccccccccCCCccceeeEEEcCCCC
Q 010206 343 ASISDIKFARNGRHILSRDYMTLKLWDINMD------SG-PVATFQVHE---HLRPKLCDLYENDSIFDKFECCLSGDGG 412 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~------~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 412 (515)
..|.++....+|+.+++|.+| .+|.+... ++ +-+...... ...+.+..+. .....+|..+.+....+
T Consensus 179 ~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~-~~~~dpI~qi~ID~SR~ 255 (1311)
T KOG1900|consen 179 VSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP-GSSKDPIRQITIDNSRN 255 (1311)
T ss_pred ceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC-CCCCCcceeeEeccccc
Confidence 468899988899999999887 66666421 01 110000000 0011111111 01111345888888888
Q ss_pred EEEEecCCCcEEEEecCCC
Q 010206 413 RVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 413 ~l~s~s~dg~i~iw~~~~~ 431 (515)
.+.+-+..|+|.+|++...
T Consensus 256 IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 256 ILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred eeeeeccCceEEEEEccCC
Confidence 8999999999999999873
No 458
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=79.17 E-value=61 Score=31.01 Aligned_cols=149 Identities=15% Similarity=0.127 Sum_probs=88.2
Q ss_pred cCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEcc-----CCCEEEEEcCCeEEE
Q 010206 293 PTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-----NGRHILSRDYMTLKL 367 (515)
Q Consensus 293 p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-----~~~~l~s~~~~~i~i 367 (515)
+++...|++|+..|.++||+......... ...++ .....||..+..-+ +...||.-.-..+.|
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~-~lllE-----------~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~v 101 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPE-DLLLE-----------TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSV 101 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCc-cEEEE-----------EecCCcEEEEEeccccCCCCcceEEEecCCEEEE
Confidence 34446899999999999999855432111 11111 11225677776542 344666656578888
Q ss_pred EEeeCCCC--------CeeeEeeeccccccccccccCCCccceeeEEEcCC-----CCEEEEecCCCcEEEEecCCCCcc
Q 010206 368 WDINMDSG--------PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD-----GGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 368 wd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
|.+..... .+..+..|.-. ...+.++.-|= ..+|..=+-||.+.+|+-+.- ..
T Consensus 102 Y~v~~~~g~~~~g~~~~L~~~yeh~l~-------------~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~-~f 167 (418)
T PF14727_consen 102 YSVSLVDGTVEHGNQYQLELIYEHSLQ-------------RTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF-AF 167 (418)
T ss_pred EEEEecCCCcccCcEEEEEEEEEEecc-------------cceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE-EE
Confidence 88843111 12222222211 11224554442 257888899999999997743 11
Q ss_pred eeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 435 STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 435 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
...+.. .--...+.+.+....+++++.+..+.-
T Consensus 168 ~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~ 200 (418)
T PF14727_consen 168 SRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLEC 200 (418)
T ss_pred EEEcCC-CCCCcCeEEeecCCEEEEecCceeEEE
Confidence 233333 445567888888888888888877765
No 459
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=79.12 E-value=27 Score=26.91 Aligned_cols=112 Identities=10% Similarity=0.087 Sum_probs=63.2
Q ss_pred EecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEec----CCCcEEEEEecCCeEEEEecCc
Q 010206 241 SNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP----THCNMLAYSSSKGSIRLIDMRQ 315 (515)
Q Consensus 241 ~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p----~~~~~l~~~~~dg~i~~wd~~~ 315 (515)
.|......|+++ ..+.|.|++.......... .-.+..+-.-...|++++-.+ ++...|+.|+. ..+..||+.+
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~-~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~ 82 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGR-QDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVEN 82 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCcccccccc-ccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEccc
Confidence 455556677777 7899999987654322100 000012222356677776544 23346665554 5788999987
Q ss_pred ccccccccceeeeccCCCccccccccccceeEEEEcc----CCCEEEEEcCCeEEEEEee
Q 010206 316 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR----NGRHILSRDYMTLKLWDIN 371 (515)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~----~~~~l~s~~~~~i~iwd~~ 371 (515)
...+. ++.-...+.++.+-. +..+++.|+...|.-||..
T Consensus 83 N~d~F-----------------yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~ 125 (136)
T PF14781_consen 83 NSDLF-----------------YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYE 125 (136)
T ss_pred Cchhh-----------------hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCC
Confidence 65321 222225677776642 4556666665666666654
No 460
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=78.56 E-value=8.3 Score=21.96 Aligned_cols=30 Identities=17% Similarity=0.123 Sum_probs=18.7
Q ss_pred cCCceEEEEEecCCCcEEEEEecC--CeEEEE
Q 010206 282 LTEVITSAEFHPTHCNMLAYSSSK--GSIRLI 311 (515)
Q Consensus 282 ~~~~i~~i~~~p~~~~~l~~~~~d--g~i~~w 311 (515)
.........|+|||..++.++..+ |...||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 345677889999994444455555 665555
No 461
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=78.28 E-value=39 Score=28.33 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=17.4
Q ss_pred CCCeEEeecC--CCeEEEEEcccCccc
Q 010206 46 SGDHLATGDR--GGRVVLFERTDTRDN 70 (515)
Q Consensus 46 ~g~~lasg~~--dg~v~vw~~~~~~~~ 70 (515)
+|.++.+.+. ...|++||+.+++..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~ 81 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEI 81 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEE
Confidence 5566666654 347999999987753
No 462
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=78.28 E-value=77 Score=31.67 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=21.9
Q ss_pred EcCCCC---EEEEecCCCcEEEEecCCCCc
Q 010206 407 LSGDGG---RVATGSYSNLFRVFGCSEGSA 433 (515)
Q Consensus 407 ~s~~~~---~l~s~s~dg~i~iw~~~~~~~ 433 (515)
+..+|+ .++.+..+|.+++.|..+++.
T Consensus 308 ~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 308 LKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred eccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 334676 788999999999999999854
No 463
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=78.12 E-value=81 Score=31.86 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=16.9
Q ss_pred CCCCCeEEeecCCC------eEEEEEcccCc
Q 010206 44 DKSGDHLATGDRGG------RVVLFERTDTR 68 (515)
Q Consensus 44 s~~g~~lasg~~dg------~v~vw~~~~~~ 68 (515)
+..+.+++.|+.++ .+..||..+++
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~ 312 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNE 312 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCc
Confidence 44567788888763 57778876654
No 464
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=77.97 E-value=50 Score=29.39 Aligned_cols=144 Identities=8% Similarity=0.071 Sum_probs=85.6
Q ss_pred cceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCC
Q 010206 343 ASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 421 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg 421 (515)
+-+..+.++ +++...+++ .-++|.|+.++.++...-...... ..-.|.-.|++...+..|.
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~g----------------yaygv~vsGn~aYVadldd 148 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDG----------------YAYGVYVSGNYAYVADLDD 148 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCc----------------eEEEEEecCCEEEEeeccC
Confidence 456677777 457777665 789999998766554332222100 0334555688988888677
Q ss_pred cEEEEecCCCCcce--eeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCC
Q 010206 422 LFRVFGCSEGSAES--TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSE 499 (515)
Q Consensus 422 ~i~iw~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 499 (515)
-+.+.|+.+.+... ..+.........++++.+ +-..+..|+.+.+++-.++....+. ........+.++..+++-
T Consensus 149 gfLivdvsdpssP~lagrya~~~~d~~~v~ISGn--~AYvA~~d~GL~ivDVSnp~sPvli-~~~n~g~g~~sv~vsdnr 225 (370)
T COG5276 149 GFLIVDVSDPSSPQLAGRYALPGGDTHDVAISGN--YAYVAWRDGGLTIVDVSNPHSPVLI-GSYNTGPGTYSVSVSDNR 225 (370)
T ss_pred cEEEEECCCCCCceeeeeeccCCCCceeEEEecC--eEEEEEeCCCeEEEEccCCCCCeEE-EEEecCCceEEEEecCCe
Confidence 78899998764443 222233333345666544 5555567887777444444322222 122234478888888888
Q ss_pred CEEEEEcC
Q 010206 500 NSIACAAS 507 (515)
Q Consensus 500 ~~la~~~~ 507 (515)
-+++..++
T Consensus 226 ~y~vvy~e 233 (370)
T COG5276 226 AYLVVYDE 233 (370)
T ss_pred eEEEEccc
Confidence 77777654
No 465
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=77.60 E-value=6.2 Score=20.56 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=20.6
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEE
Q 010206 36 DIISAIEFDKSGDHLATGDRGGRVVLFE 63 (515)
Q Consensus 36 ~~v~~v~~s~~g~~lasg~~dg~v~vw~ 63 (515)
+.|.+++..+. +++++...+.+|||.
T Consensus 2 E~i~aia~g~~--~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGDS--WVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccCC--EEEEEeCCCeEEecC
Confidence 45788887754 899998889999974
No 466
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=77.49 E-value=42 Score=28.19 Aligned_cols=68 Identities=18% Similarity=0.152 Sum_probs=37.0
Q ss_pred CCCEEEE-e--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccc
Q 010206 245 DGETFIS-A--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD 320 (515)
Q Consensus 245 ~~~~l~s-~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~ 320 (515)
++.++.+ | ....|++||+.+++...... +.+..+ ..+.++.+ +..+....-.+|.-..||.++.+...
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~-l~~~~~--FgEGit~~-----gd~~y~LTw~egvaf~~d~~t~~~lg 125 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEK-LAPDTV--FGEGITKL-----GDYFYQLTWKEGVAFKYDADTLEELG 125 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEee-cCCccc--cccceeec-----cceEEEEEeccceeEEEChHHhhhhc
Confidence 4455555 4 47789999999777554321 111011 11222221 21344445667888889988766543
No 467
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.09 E-value=18 Score=34.72 Aligned_cols=91 Identities=18% Similarity=0.228 Sum_probs=53.5
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEcc---------cCcccCccccCcccccccccCCccceeeeecccCCCccc
Q 010206 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERT---------DTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFD 104 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 104 (515)
-.-.|..+..++.|..+|-.+.+|.+.++=.. +++..-.+|... -.-++... ..|
T Consensus 102 V~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~----------i~~~~fts-s~~----- 165 (741)
T KOG4460|consen 102 VLFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTP----------VAERFFTS-STS----- 165 (741)
T ss_pred ceEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeec----------ccceeecc-CCc-----
Confidence 34568889999999999999999855443311 111110111000 00000000 011
Q ss_pred ccccccccceeEEEEEeecC-CCcEEEeeeCCCeEEEEEccCCee
Q 010206 105 YLKSLEIEEKINKIRWCQSA-NSALYLLSTNDKTIKLWKVQEKKV 148 (515)
Q Consensus 105 ~~~~~~~~~~v~~l~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~ 148 (515)
-.+...+|+|+. -+..|+.-+.|.+||+||+....-
T Consensus 166 --------ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 166 --------LTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred --------eeeeeccccCCccCCceEEEEecCcEEEEEecCCcch
Confidence 347788998866 135788888999999999987543
No 468
>PRK13615 lipoprotein LpqB; Provisional
Probab=75.70 E-value=91 Score=31.20 Aligned_cols=138 Identities=9% Similarity=-0.006 Sum_probs=75.2
Q ss_pred eEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEE
Q 010206 346 SDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 424 (515)
Q Consensus 346 ~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~ 424 (515)
.+++.+++++.++.-+. +.+.++... +.....+.+.. .+.-.|+++| .+-+.-.+...+
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~--~~~~~~~~~~~-----------------Lt~PS~d~~g-~vWtv~~g~~~~ 396 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGD--RDAVLLDTRPG-----------------LVAPSLDAQG-YVWSTPASDPRG 396 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCC--CcceeeccCCc-----------------cccCcCcCCC-CEEEEeCCCceE
Confidence 67899999999887654 777777554 22222222221 1245666766 444444333344
Q ss_pred EEecCCCCcce-eeecc-CCCceeeEEECCCCCeeEeec---CCCeEEE----ecCCCCCcccc--C-CccccccCCeeE
Q 010206 425 VFGCSEGSAES-TTLEA-SKNPMRRQVQTPSRPSRPLGS---LSGVVRR----VKGADNSALDA--N-GNAFDFSMKLLH 492 (515)
Q Consensus 425 iw~~~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~s~~---~d~~v~l----~~~~~~~~~~~--~-~~~~~~~~~i~~ 492 (515)
+......+... ..... ...+|..+..|+||-.++.-. ..+.|.+ ..+..+. .+ . .....-...+.+
T Consensus 397 l~~~~~~G~~~~v~v~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~--~L~~~p~~l~~~l~~v~s 474 (557)
T PRK13615 397 LVAWGPDGVGHPVAVSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPT--SLTTTPLELLASPGTPLD 474 (557)
T ss_pred EEEecCCCceEEeeccccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcce--EeeeccEEcccCcCccee
Confidence 44433211121 11121 235799999999998765543 2456776 3222111 12 1 111111338899
Q ss_pred EEEcCCCCEEEEE
Q 010206 493 LAWHPSENSIACA 505 (515)
Q Consensus 493 ~~~s~~~~~la~~ 505 (515)
++|..++.+.+.+
T Consensus 475 l~W~~~~~laVl~ 487 (557)
T PRK13615 475 ATWVDELDVATLT 487 (557)
T ss_pred eEEcCCCEEEEEe
Confidence 9999999987765
No 469
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=75.11 E-value=9 Score=20.04 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=18.7
Q ss_pred eEEEEECCCCCeEEeecCCCeEEEE
Q 010206 38 ISAIEFDKSGDHLATGDRGGRVVLF 62 (515)
Q Consensus 38 v~~v~~s~~g~~lasg~~dg~v~vw 62 (515)
...++++++|+++++=..+.+|+++
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 3578888888887777777777764
No 470
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=72.60 E-value=1.8e+02 Score=33.14 Aligned_cols=64 Identities=8% Similarity=0.030 Sum_probs=42.3
Q ss_pred eeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 402 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 402 v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
|..++.-.+ +.+++....|.+.... +.+......-.+-...|..++......++|.- .+|.+.-
T Consensus 705 i~a~Avv~~-~~fvald~qg~lt~h~-k~g~p~~l~~~gl~G~ik~l~lD~~~nL~Alt-~~G~Lf~ 768 (1774)
T PF11725_consen 705 ITAFAVVND-NKFVALDDQGDLTAHQ-KPGRPVPLSRPGLSGEIKDLALDEKQNLYALT-STGELFR 768 (1774)
T ss_pred ceeEEEEcC-CceEEeccCCcccccc-CCCCCccCCCCCCCcchhheeeccccceeEec-CCCceee
Confidence 446666644 5566778889999988 66644444445557788899988776655554 4555444
No 471
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=72.13 E-value=99 Score=30.01 Aligned_cols=61 Identities=7% Similarity=0.011 Sum_probs=36.2
Q ss_pred CceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCC
Q 010206 284 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 354 (515)
Q Consensus 284 ~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 354 (515)
...+.++|.|++ ++|++--..|.|++++..++... ....+... ....-......|+++|+-
T Consensus 30 ~~Pw~maflPDG-~llVtER~~G~I~~v~~~~~~~~--~~~~l~~v-------~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDN-QLWVTERATGKILRVNPETGEVK--VVFTLPEI-------VNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCC-eEEEEEecCCEEEEEeCCCCcee--eeecCCce-------eccCCCCceeeEEECCCc
Confidence 446899999998 77765554699999876544211 01011000 000113678899999874
No 472
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=71.71 E-value=69 Score=27.99 Aligned_cols=122 Identities=12% Similarity=0.165 Sum_probs=60.6
Q ss_pred EEEecCCCcEEEEEec-C--CeEEEEecCc-ccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--
Q 010206 289 AEFHPTHCNMLAYSSS-K--GSIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-- 362 (515)
Q Consensus 289 i~~~p~~~~~l~~~~~-d--g~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-- 362 (515)
-.+.||| +++.+|+. + ..+++++... ...+ .+...... -.....-.++..-|||+.|+.|+.
T Consensus 72 g~~L~dG-~ll~tGG~~~G~~~ir~~~p~~~~~~~-----~w~e~~~~------m~~~RWYpT~~~L~DG~vlIvGG~~~ 139 (243)
T PF07250_consen 72 GAFLPDG-RLLQTGGDNDGNKAIRIFTPCTSDGTC-----DWTESPND------MQSGRWYPTATTLPDGRVLIVGGSNN 139 (243)
T ss_pred cCCCCCC-CEEEeCCCCccccceEEEecCCCCCCC-----CceECccc------ccCCCccccceECCCCCEEEEeCcCC
Confidence 3577898 88888876 3 3577877644 1100 11110000 001123445556689999998754
Q ss_pred CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCC
Q 010206 363 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 363 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
....+|.-.........+..-..... ......++ .+-..|||++++.+..+. .|||..+.
T Consensus 140 ~t~E~~P~~~~~~~~~~~~~l~~~~~-----~~~~nlYP--~~~llPdG~lFi~an~~s--~i~d~~~n 199 (243)
T PF07250_consen 140 PTYEFWPPKGPGPGPVTLPFLSQTSD-----TLPNNLYP--FVHLLPDGNLFIFANRGS--IIYDYKTN 199 (243)
T ss_pred CcccccCCccCCCCceeeecchhhhc-----cCccccCc--eEEEcCCCCEEEEEcCCc--EEEeCCCC
Confidence 45556654321111111110000000 00011111 467789999998887654 46677765
No 473
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=71.69 E-value=1.4e+02 Score=31.58 Aligned_cols=138 Identities=14% Similarity=0.147 Sum_probs=77.0
Q ss_pred cCCeEEEEec---C----CCCEEEEeCCCcEEEEeCCCCCc------ccceecccC-cccc---ccCCceEEEEEecCCC
Q 010206 234 DYHINSISNN---S----DGETFISADDLRINLWNLEISNQ------SFNIVDVKP-ANME---DLTEVITSAEFHPTHC 296 (515)
Q Consensus 234 ~~~v~~~~~~---~----~~~~l~s~~d~~i~iwd~~~~~~------~~~~~~~~~-~~~~---~~~~~i~~i~~~p~~~ 296 (515)
..+|..|+|. . ...+|++-....+.|+...-.+. ....++..+ ..+. ....+...++|+|...
T Consensus 79 ~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~ 158 (765)
T PF10214_consen 79 GSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQ 158 (765)
T ss_pred CCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCcc
Confidence 3667777776 2 23455555667777777322211 111111111 0111 1234567999999877
Q ss_pred cEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeC
Q 010206 297 NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM 372 (515)
Q Consensus 297 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~ 372 (515)
..||.-...|.-.|||+.................. +....-....+.-..+.|.++...|+.++...+.++|+..
T Consensus 159 ~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~-gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~ 233 (765)
T PF10214_consen 159 RQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNIS-GSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFES 233 (765)
T ss_pred ceEEEEeccCcEEEEEeccccccCCcceeeccCCC-ccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCC
Confidence 89999999999999999322211110000000000 0000000111455688999888899999888999999985
No 474
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=69.91 E-value=19 Score=36.18 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=25.2
Q ss_pred CceEEEEEec----CCCcEEEEEecCCeEEEEecCcccc
Q 010206 284 EVITSAEFHP----THCNMLAYSSSKGSIRLIDMRQSAL 318 (515)
Q Consensus 284 ~~i~~i~~~p----~~~~~l~~~~~dg~i~~wd~~~~~~ 318 (515)
..+..+++++ +. .++++-+.|+.+|+||+.++++
T Consensus 215 ~~~~~~~~~~~~~~~~-~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 215 SVAASLAVSSSEINDD-TFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp --EEEEEE-----ETT-TEEEEEETTSEEEEEETTTTCE
T ss_pred CccceEEEecceeCCC-CEEEEEeCCCeEEEEECCCCeE
Confidence 3455666665 44 7999999999999999999886
No 475
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=69.16 E-value=1e+02 Score=28.99 Aligned_cols=111 Identities=12% Similarity=0.112 Sum_probs=64.4
Q ss_pred CCCCCcccEEeeeeeec-ccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcc-cceeccc
Q 010206 199 FPPGGVSSLRLPVVVVT-SQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS-FNIVDVK 275 (515)
Q Consensus 199 ~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~-~~~~~~~ 275 (515)
+....+|.+..|. +. ...+....+..+.|. -...+..+........|..+ .+.-|.-|+.+..... ..++..-
T Consensus 175 ~v~~k~G~~~Qy~--L~~~~~g~v~~~lVR~f~--~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~ 250 (381)
T PF02333_consen 175 FVNGKDGRVEQYE--LTDDGDGKVSATLVREFK--VGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASA 250 (381)
T ss_dssp EEEETTSEEEEEE--EEE-TTSSEEEEEEEEEE---SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEB
T ss_pred EEecCCceEEEEE--EEeCCCCcEeeEEEEEec--CCCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecc
Confidence 5667778888888 44 334445556666653 23478888898888888888 7877777777633221 1222110
Q ss_pred CccccccCCceEEEEEe--cCCCcE-EEEEecCCeEEEEecCc
Q 010206 276 PANMEDLTEVITSAEFH--PTHCNM-LAYSSSKGSIRLIDMRQ 315 (515)
Q Consensus 276 ~~~~~~~~~~i~~i~~~--p~~~~~-l~~~~~dg~i~~wd~~~ 315 (515)
.-......|-.|++- +++..+ |++.=.++...+|+.+.
T Consensus 251 --~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 251 --DGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp --SSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred --cccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 012234567777764 333234 44444578999999765
No 476
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=69.10 E-value=23 Score=35.53 Aligned_cols=31 Identities=13% Similarity=0.425 Sum_probs=25.4
Q ss_pred CCcEEEeeeCCCeEEEEEccCCeeEEEeecc
Q 010206 125 NSALYLLSTNDKTIKLWKVQEKKVKKVFDWN 155 (515)
Q Consensus 125 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 155 (515)
+..++++.+.|+++|+||+.++++.......
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 4568999999999999999999986655443
No 477
>PRK10115 protease 2; Provisional
Probab=68.49 E-value=1.6e+02 Score=30.78 Aligned_cols=112 Identities=16% Similarity=0.182 Sum_probs=62.8
Q ss_pred CCeEEEEecCCCCEEEEe-C-C----CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC---
Q 010206 235 YHINSISNNSDGETFISA-D-D----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--- 305 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~-d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d--- 305 (515)
-.+..+.++|++++|+.+ + + ..|++.|+.++..... .+.+ .-..++|.+|+ +.|+....+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~-------~i~~---~~~~~~w~~D~-~~~~y~~~~~~~ 195 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE-------LLDN---VEPSFVWANDS-WTFYYVRKHPVT 195 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc-------cccC---cceEEEEeeCC-CEEEEEEecCCC
Confidence 346678899999999976 3 2 3577888876642221 1111 11569999998 555444332
Q ss_pred ---CeEEEEecCcccccccccceeeeccCCCcccccccccccee-EEEEccCCCEEEEE--c--CCeEEEEEee
Q 010206 306 ---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS-DIKFARNGRHILSR--D--YMTLKLWDIN 371 (515)
Q Consensus 306 ---g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~s~--~--~~~i~iwd~~ 371 (515)
..|..+++.++.... ...++... .... .+..+.++++++.. + ++.+.+++..
T Consensus 196 ~~~~~v~~h~lgt~~~~d--~lv~~e~~------------~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 196 LLPYQVWRHTIGTPASQD--ELVYEEKD------------DTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred CCCCEEEEEECCCChhHC--eEEEeeCC------------CCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 356667776652111 12233211 1122 33344588877652 2 2688888854
No 478
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=67.41 E-value=97 Score=28.00 Aligned_cols=30 Identities=13% Similarity=0.117 Sum_probs=25.6
Q ss_pred ceEEEEEecCCCcEEEEEecCCeEEEEecCc
Q 010206 285 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 315 (515)
Q Consensus 285 ~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~ 315 (515)
....++++++| .++++--..+.|..|+..+
T Consensus 187 ~s~g~~~D~~G-~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 187 QSDGMAIDPNG-NLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp SECEEEEETTT-EEEEEECCCTEEEEEETTT
T ss_pred CCceEEECCCC-cEEEecCCCCeEEEEeCCC
Confidence 55678899988 8888888899999999876
No 479
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=67.34 E-value=56 Score=25.26 Aligned_cols=71 Identities=14% Similarity=0.229 Sum_probs=46.5
Q ss_pred EEEecCCCcEEEEEecCCeEEEEecCccccccc----ccceeeeccCCCccccccccccceeEEEEcc-----CCCEEEE
Q 010206 289 AEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT----HSKLFEEQEAPGTRSFFTEIIASISDIKFAR-----NGRHILS 359 (515)
Q Consensus 289 i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-----~~~~l~s 359 (515)
-+|.... ..|++++.-|+|.|++......... .+..+.. ...|++++-.+ +...|+.
T Consensus 4 GkfDG~~-pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi-------------n~~italaaG~l~~~~~~D~Lli 69 (136)
T PF14781_consen 4 GKFDGVH-PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI-------------NQEITALAAGRLKPDDGRDCLLI 69 (136)
T ss_pred EEeCCCc-eeEEEEecCCEEEEECCCccccccccccCceeEEEC-------------CCceEEEEEEecCCCCCcCEEEE
Confidence 3566666 5788888999999998765432211 1122221 24567765443 4568888
Q ss_pred EcCCeEEEEEeeCC
Q 010206 360 RDYMTLKLWDINMD 373 (515)
Q Consensus 360 ~~~~~i~iwd~~~~ 373 (515)
|+...|-.||+..+
T Consensus 70 Gt~t~llaYDV~~N 83 (136)
T PF14781_consen 70 GTQTSLLAYDVENN 83 (136)
T ss_pred eccceEEEEEcccC
Confidence 99899999999863
No 480
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=66.96 E-value=41 Score=35.23 Aligned_cols=55 Identities=15% Similarity=0.096 Sum_probs=40.4
Q ss_pred eeeEEEcCCCCEEEE-ecCCC-----cEEEEecCCCCcceeeeccCCCceeeEEECCCCCe
Q 010206 402 KFECCLSGDGGRVAT-GSYSN-----LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPS 456 (515)
Q Consensus 402 v~~~~~s~~~~~l~s-~s~dg-----~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 456 (515)
+.+-+|||||+.|+- .+.++ .|++-++.+....+..|......|....+..+|-.
T Consensus 352 i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~e~gdt 412 (912)
T TIGR02171 352 VYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVLENGDT 412 (912)
T ss_pred eecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEecCCCCe
Confidence 457899999999997 44443 58888998876665677777777777777776653
No 481
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=65.84 E-value=97 Score=27.44 Aligned_cols=195 Identities=14% Similarity=0.089 Sum_probs=111.0
Q ss_pred CCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEec
Q 010206 235 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 313 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~ 313 (515)
.....++-.|||..-.++ ..+.|--.|..+++...- . -+.......|...||+ ..-++-+.. -|.-.|-
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~y-------p-Lg~Ga~Phgiv~gpdg-~~Witd~~~-aI~R~dp 131 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETY-------P-LGSGASPHGIVVGPDG-SAWITDTGL-AIGRLDP 131 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEE-------e-cCCCCCCceEEECCCC-CeeEecCcc-eeEEecC
Confidence 445678888899777777 677777788877764321 1 1223445778888998 444433222 5555666
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeecccccccccc
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDL 393 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 393 (515)
++... +.|.... ..-........|.+.|++-+++..|.---.|-. ...++.+....+...
T Consensus 132 kt~ev-----t~f~lp~--------~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa--~~~i~vfpaPqG~gp----- 191 (353)
T COG4257 132 KTLEV-----TRFPLPL--------EHADANLETAVFDPWGNLWFTGQIGAYGRLDPA--RNVISVFPAPQGGGP----- 191 (353)
T ss_pred cccce-----EEeeccc--------ccCCCcccceeeCCCccEEEeeccccceecCcc--cCceeeeccCCCCCC-----
Confidence 55542 2232221 111246778889999999998753211111221 334455544433211
Q ss_pred ccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeee-ccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 394 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL-EASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 394 ~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
..+|..|||..-++.-.++.|-..|..++....... +.....-+.+-.+|.++.-++-...+.+..
T Consensus 192 ---------yGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~r 258 (353)
T COG4257 192 ---------YGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHR 258 (353)
T ss_pred ---------cceEECCCCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeE
Confidence 278999999988776667777777776663222111 121223344555667776666555555554
No 482
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=65.07 E-value=2.3e+02 Score=31.46 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=11.5
Q ss_pred eEEEcCCCCEEEEecC
Q 010206 404 ECCLSGDGGRVATGSY 419 (515)
Q Consensus 404 ~~~~s~~~~~l~s~s~ 419 (515)
+++++++|.+.++-++
T Consensus 597 ~Iavg~~G~lyvaEsD 612 (1899)
T KOG4659|consen 597 DIAVGTDGALYVAESD 612 (1899)
T ss_pred ceeecCCceEEEEecc
Confidence 6888888877665544
No 483
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=65.01 E-value=19 Score=19.32 Aligned_cols=24 Identities=8% Similarity=0.090 Sum_probs=20.0
Q ss_pred EEEeeeCCCeEEEEEccCCeeEEE
Q 010206 128 LYLLSTNDKTIKLWKVQEKKVKKV 151 (515)
Q Consensus 128 ~l~~~~~d~~i~iwd~~~~~~~~~ 151 (515)
.+++++.++.+..+|.++++....
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 678888899999999998876543
No 484
>PRK13613 lipoprotein LpqB; Provisional
Probab=64.63 E-value=1.7e+02 Score=29.80 Aligned_cols=144 Identities=5% Similarity=-0.007 Sum_probs=72.6
Q ss_pred ceeEEEEccCCCEEEEEc-C-CeEEEEEeeCCCC----CeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEe
Q 010206 344 SISDIKFARNGRHILSRD-Y-MTLKLWDINMDSG----PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 417 (515)
Q Consensus 344 ~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 417 (515)
.+.+++.++++..++.-+ + ..+.+..+..... ....+.+.. .+.-.|.++|. +-+.
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~~-----------------Lt~PS~d~~g~-vWtv 425 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADGR-----------------LTSPSWDGRGD-LWVV 425 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeeccCc-----------------ccCCcCcCCCC-EEEe
Confidence 578899999998888754 3 4666665532122 111222211 12456666663 3333
Q ss_pred cC--CC--cEEEEecCCCCcceeeeccC-CCceeeEEECCCCCeeEeecC---CCeEEE----ecCCCCCccccCCcccc
Q 010206 418 SY--SN--LFRVFGCSEGSAESTTLEAS-KNPMRRQVQTPSRPSRPLGSL---SGVVRR----VKGADNSALDANGNAFD 485 (515)
Q Consensus 418 s~--dg--~i~iw~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~---d~~v~l----~~~~~~~~~~~~~~~~~ 485 (515)
.. ++ .+++..- ++.......... ...|..+..++||-.++.-.. .+.+.+ .................
T Consensus 426 d~~~~~~~vl~v~~~-~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~ 504 (599)
T PRK13613 426 DRDPADPRLLWLLQG-DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAP 504 (599)
T ss_pred cCCCCCceEEEEEcC-CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEecc
Confidence 21 22 2555542 332211111112 237999999999987655433 356666 21111110000001111
Q ss_pred ccCCeeEEEEcCCCCEEEEEc
Q 010206 486 FSMKLLHLAWHPSENSIACAA 506 (515)
Q Consensus 486 ~~~~i~~~~~s~~~~~la~~~ 506 (515)
-...+.+++|..++.+++.+.
T Consensus 505 ~l~~v~~~~W~~~~sL~Vlg~ 525 (599)
T PRK13613 505 ELEDVTDMSWAGDSQLVVLGR 525 (599)
T ss_pred CCCccceeEEcCCCEEEEEec
Confidence 123489999999999877563
No 485
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=61.99 E-value=51 Score=23.42 Aligned_cols=42 Identities=12% Similarity=0.003 Sum_probs=26.6
Q ss_pred ecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEee
Q 010206 417 GSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG 460 (515)
Q Consensus 417 ~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 460 (515)
+..+|++.-||..+++ . ..+...-.-.+.++.++++.+++.+
T Consensus 33 ~~~~GRll~ydp~t~~-~-~vl~~~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKE-T-TVLLDGLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp T---EEEEEEETTTTE-E-EEEEEEESSEEEEEE-TTSSEEEEE
T ss_pred CCCCcCEEEEECCCCe-E-EEehhCCCccCeEEEcCCCCEEEEE
Confidence 3446889999998763 2 3333334566799999999876554
No 486
>PHA03098 kelch-like protein; Provisional
Probab=61.18 E-value=1.8e+02 Score=29.09 Aligned_cols=23 Identities=4% Similarity=0.044 Sum_probs=14.9
Q ss_pred CCCcEEEEEecC-----CeEEEEecCccc
Q 010206 294 THCNMLAYSSSK-----GSIRLIDMRQSA 317 (515)
Q Consensus 294 ~~~~~l~~~~~d-----g~i~~wd~~~~~ 317 (515)
++ .+++.|+.+ ..+..||..+.+
T Consensus 342 ~~-~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 342 NN-RIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred CC-EEEEEeCCCCCEecceEEEEcCCCCc
Confidence 45 788888865 246677776543
No 487
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=60.75 E-value=1.5e+02 Score=27.95 Aligned_cols=126 Identities=12% Similarity=0.103 Sum_probs=66.2
Q ss_pred CceEEEEEe--c-CCCcEEEEEecCCeEEEEecCc---ccccccccceeeeccCCCccccccccccceeEEEEccCCCEE
Q 010206 284 EVITSAEFH--P-THCNMLAYSSSKGSIRLIDMRQ---SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI 357 (515)
Q Consensus 284 ~~i~~i~~~--p-~~~~~l~~~~~dg~i~~wd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 357 (515)
..++.+++- | ++..+.+....+|.+..|.+.. +....+.++.|... +.+..|........|
T Consensus 156 ~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~-------------sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 156 SEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG-------------SQPEGCVVDDETGRL 222 (381)
T ss_dssp SSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S-------------S-EEEEEEETTTTEE
T ss_pred ccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC-------------CcceEEEEecccCCE
Confidence 347778773 3 3434666778899988887752 33333334444432 357888888877888
Q ss_pred EEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEE--cCCCC-EEE-EecCCCcEEEEecCCC
Q 010206 358 LSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL--SGDGG-RVA-TGSYSNLFRVFGCSEG 431 (515)
Q Consensus 358 ~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~-~l~-s~s~dg~i~iw~~~~~ 431 (515)
+.+.+ .-|.-|+.+........+...... . .-..++-.+++ .++++ ||+ |.-.+++..+|+.+..
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g-~--------~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADG-D--------GLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSS-S--------SB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccc-c--------ccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 88876 555556655322221122111000 0 00112334554 33443 444 4446789999998754
No 488
>PHA03098 kelch-like protein; Provisional
Probab=60.64 E-value=1.9e+02 Score=29.02 Aligned_cols=23 Identities=13% Similarity=0.299 Sum_probs=15.4
Q ss_pred CCCcEEEEEecC-----CeEEEEecCccc
Q 010206 294 THCNMLAYSSSK-----GSIRLIDMRQSA 317 (515)
Q Consensus 294 ~~~~~l~~~~~d-----g~i~~wd~~~~~ 317 (515)
++ .+++.|+.+ ..+.+||..+.+
T Consensus 487 ~~-~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 487 NN-KIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CC-EEEEEcCCcCCcccceeEEEeCCCCE
Confidence 45 677777764 467788877653
No 489
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=59.70 E-value=1.1e+02 Score=26.01 Aligned_cols=76 Identities=11% Similarity=0.146 Sum_probs=42.2
Q ss_pred cCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCc---ccceecccCccccccCC-ceEEEEEecCCCcEEEEEecCCeEE
Q 010206 234 DYHINSISNNSDGETFISADDLRINLWNLEISNQ---SFNIVDVKPANMEDLTE-VITSAEFHPTHCNMLAYSSSKGSIR 309 (515)
Q Consensus 234 ~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~-~i~~i~~~p~~~~~l~~~~~dg~i~ 309 (515)
...+.+++-.|-..-|+.|.++.+.+|.+..... ...++++....+.-|.+ .+..+++.. .++|..+ +-.++
T Consensus 134 ~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~ic~---~yiA~~s-~~ev~ 209 (215)
T PF14761_consen 134 SEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDNFKPTQVAICE---GYIAVMS-DLEVL 209 (215)
T ss_pred CCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheecCceEEEEEEEe---eEEEEec-CCEEE
Confidence 4567888888865566677778899998764332 12333333222222222 255666663 3555443 44566
Q ss_pred EEec
Q 010206 310 LIDM 313 (515)
Q Consensus 310 ~wd~ 313 (515)
++.+
T Consensus 210 Vlkl 213 (215)
T PF14761_consen 210 VLKL 213 (215)
T ss_pred EEEE
Confidence 6544
No 490
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=58.53 E-value=2.7e+02 Score=30.08 Aligned_cols=34 Identities=9% Similarity=0.065 Sum_probs=28.6
Q ss_pred ccccceEEEEECCCC------CeEEeecCCCeEEEEEccc
Q 010206 33 QEVDIISAIEFDKSG------DHLATGDRGGRVVLFERTD 66 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g------~~lasg~~dg~v~vw~~~~ 66 (515)
.-...|.|+++.+++ ++++.|+.|+.+++..+..
T Consensus 580 tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p 619 (1205)
T KOG1898|consen 580 TLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDP 619 (1205)
T ss_pred eeceeehhhccCCCCcchhhcceeeeeccccceeEEEecC
Confidence 445789999999876 5799999999999999863
No 491
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=57.42 E-value=40 Score=23.75 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=23.3
Q ss_pred CceEEEEEecCCCcEEEEEecCCeEEEEecCc
Q 010206 284 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 315 (515)
Q Consensus 284 ~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~ 315 (515)
.....|.++|++..+.++....+.|++|..+.
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 44578999999844555555688999998653
No 492
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=56.65 E-value=40 Score=21.33 Aligned_cols=17 Identities=18% Similarity=0.430 Sum_probs=14.3
Q ss_pred eeEEEcCCCCEEEEecC
Q 010206 403 FECCLSGDGGRVATGSY 419 (515)
Q Consensus 403 ~~~~~s~~~~~l~s~s~ 419 (515)
.+++..|||++|+.|..
T Consensus 4 ~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 4 YAVAVQSDGKILVAGYV 20 (55)
T ss_pred EEEEECCCCcEEEEEEe
Confidence 47899999999998853
No 493
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=55.16 E-value=1.7e+02 Score=30.32 Aligned_cols=30 Identities=13% Similarity=0.235 Sum_probs=24.1
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEc
Q 010206 35 VDIISAIEFDKSGDHLATGDRGGRVVLFER 64 (515)
Q Consensus 35 ~~~v~~v~~s~~g~~lasg~~dg~v~vw~~ 64 (515)
.+.|-+.+||.|.+.++.-..+..|.+++-
T Consensus 112 ~nGIvaa~wS~DE~~~cvvt~~r~il~~~k 141 (1243)
T COG5290 112 SNGIVAASWSADEKTWCVVTSTREILLFDK 141 (1243)
T ss_pred cCceEEEeeccCCceEEEEEcCceEEEEec
Confidence 568899999999997777767778888773
No 494
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=54.94 E-value=62 Score=22.82 Aligned_cols=28 Identities=4% Similarity=0.150 Sum_probs=23.3
Q ss_pred ceeEEEEccCCCEEEEEcC--CeEEEEEee
Q 010206 344 SISDIKFARNGRHILSRDY--MTLKLWDIN 371 (515)
Q Consensus 344 ~i~~~~~s~~~~~l~s~~~--~~i~iwd~~ 371 (515)
.-+.+.++|++++|+.++- +.|++|..+
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 3578899999999998763 899999875
No 495
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=54.75 E-value=38 Score=19.17 Aligned_cols=28 Identities=18% Similarity=0.074 Sum_probs=22.9
Q ss_pred EEEeeeCCCeEEEEEccCCeeEEEeecc
Q 010206 128 LYLLSTNDKTIKLWKVQEKKVKKVFDWN 155 (515)
Q Consensus 128 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 155 (515)
.++.++.||.|.-.|.++|+.+......
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 4566689999999999999988776654
No 496
>PRK13614 lipoprotein LpqB; Provisional
Probab=54.34 E-value=2.5e+02 Score=28.43 Aligned_cols=143 Identities=8% Similarity=-0.039 Sum_probs=74.3
Q ss_pred ceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCC--
Q 010206 344 SISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN-- 421 (515)
Q Consensus 344 ~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg-- 421 (515)
.+.+++.+++++.++..+...-.+|-...++.....+.+.. .+.-.|+++| .+-+...+.
T Consensus 344 ~~~s~avS~~g~~~A~~~~~~~~l~~~~~g~~~~~~~~g~~-----------------Lt~PS~d~~g-~vWtv~~g~~~ 405 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGSRTTLYTVSPGQPARALTSGST-----------------LTRPSFSPQD-WVWTAGPGGNG 405 (573)
T ss_pred cccceeecCCCceEEEecCCCcEEEEecCCCcceeeecCCC-----------------ccCCcccCCC-CEEEeeCCCCc
Confidence 57788999999998886541223443332222222233222 1245677776 555544333
Q ss_pred cEEEEecC-CCCc---c--eeeeccCC-CceeeEEECCCCCeeEee-cCCCe--EEE----ec-CCCCCccccC-Ccccc
Q 010206 422 LFRVFGCS-EGSA---E--STTLEASK-NPMRRQVQTPSRPSRPLG-SLSGV--VRR----VK-GADNSALDAN-GNAFD 485 (515)
Q Consensus 422 ~i~iw~~~-~~~~---~--~~~~~~~~-~~v~~~~~~~~~~~l~s~-~~d~~--v~l----~~-~~~~~~~~~~-~~~~~ 485 (515)
.|..+.-. ++.. . ........ ..|..+..|+||-.++.- ..+|. |.+ .. ...+. .+. ...+.
T Consensus 406 ~vv~~~~~g~~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~--~L~~~~~~~ 483 (573)
T PRK13614 406 RIVAYRPTGVAEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPR--ELTAPITLA 483 (573)
T ss_pred eEEEEecCCCcccccccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeE--EccCceecc
Confidence 44443321 1100 0 01112222 349999999999866553 34555 666 21 11111 111 11112
Q ss_pred ccCCeeEEEEcCCCCEEEEEc
Q 010206 486 FSMKLLHLAWHPSENSIACAA 506 (515)
Q Consensus 486 ~~~~i~~~~~s~~~~~la~~~ 506 (515)
....+.+++|..++.+++.+.
T Consensus 484 ~~~~~~sl~W~~~~sl~V~~~ 504 (573)
T PRK13614 484 ADSDADTGAWVGDSTVVVTKA 504 (573)
T ss_pred cCCCcceeEEcCCCEEEEEec
Confidence 346889999999999877654
No 497
>PRK13615 lipoprotein LpqB; Provisional
Probab=54.08 E-value=1.6e+02 Score=29.63 Aligned_cols=96 Identities=10% Similarity=-0.046 Sum_probs=53.2
Q ss_pred eeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecC---CCCCcccc
Q 010206 403 FECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKG---ADNSALDA 479 (515)
Q Consensus 403 ~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~---~~~~~~~~ 479 (515)
.+++.+++++.++....++.++++..... ....+.+ .....-.|.+++ ++-+.-.+...++... +... +.
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~~--~~~~~~~--~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~--~v 409 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGDRD--AVLLDTR--PGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGH--PV 409 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCCCc--ceeeccC--CccccCcCcCCC-CEEEEeCCCceEEEEecCCCceE--Ee
Confidence 37899999999988877888888866522 2122221 123344444544 4444333223333110 1111 11
Q ss_pred CCccccccCCeeEEEEcCCCCEEEEEc
Q 010206 480 NGNAFDFSMKLLHLAWHPSENSIACAA 506 (515)
Q Consensus 480 ~~~~~~~~~~i~~~~~s~~~~~la~~~ 506 (515)
... ......|..+..|+||-++|+-.
T Consensus 410 ~v~-~~~~~~I~~lrvSrDG~R~Avi~ 435 (557)
T PRK13615 410 AVS-WTATGRVVSLEVARDGARVLVQL 435 (557)
T ss_pred ecc-ccCCCeeEEEEeCCCccEEEEEE
Confidence 111 11346899999999999988543
No 498
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.68 E-value=1e+02 Score=33.53 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=22.4
Q ss_pred cCCCCEEEEecCCCcEEEEecCCC
Q 010206 408 SGDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 408 s~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
++++..++++-.||.+.+||...+
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g 266 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSG 266 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCC
Confidence 778999999999999999999986
No 499
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=52.50 E-value=3e+02 Score=28.86 Aligned_cols=74 Identities=11% Similarity=0.107 Sum_probs=45.1
Q ss_pred CcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEe
Q 010206 233 HDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 312 (515)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd 312 (515)
...+|.+.++..| .+.++.+|.|.++...+....... .....|...|+++.+..++ -+++ -.....+++++
T Consensus 625 g~lPvrsla~~ed--~~was~gG~V~vi~~tt~~~~~~l-----eahqee~~~Vthm~~~~~g-Vwva-fasG~~~rlfh 695 (925)
T KOG3522|consen 625 GSLPVRSLAFQED--FVWASEGGCVHVIPSTTFIRSWDL-----EAHQEEAHSVTHMLYLDNG-VWVA-FASGDEERLFH 695 (925)
T ss_pred CCccccchhhhhc--eeeeecCCceEEEechhccccchh-----HHHHhhcceEEEEEeeCCc-eEEE-EcCCCEEEEec
Confidence 3456777776544 455568999999988765433211 1223456778999988776 3443 33444566665
Q ss_pred cCc
Q 010206 313 MRQ 315 (515)
Q Consensus 313 ~~~ 315 (515)
..+
T Consensus 696 tet 698 (925)
T KOG3522|consen 696 TET 698 (925)
T ss_pred ccc
Confidence 544
No 500
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=52.50 E-value=1.8e+02 Score=26.22 Aligned_cols=54 Identities=11% Similarity=0.222 Sum_probs=36.8
Q ss_pred CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEe------cCCeEEEEecCccc
Q 010206 255 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS------SKGSIRLIDMRQSA 317 (515)
Q Consensus 255 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~------~dg~i~~wd~~~~~ 317 (515)
..|++||....+... .-.+-.+.|+++.|..+. ++++.|. ....+..||+.+..
T Consensus 16 ~~lC~yd~~~~qW~~--------~g~~i~G~V~~l~~~~~~-~Llv~G~ft~~~~~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSS--------PGNGISGTVTDLQWASNN-QLLVGGNFTLNGTNSSNLATYDFKNQT 75 (281)
T ss_pred CEEEEEECCCCEeec--------CCCCceEEEEEEEEecCC-EEEEEEeeEECCCCceeEEEEecCCCe
Confidence 458899987554321 112346789999998665 6777775 35578889987764
Done!