Query 010206
Match_columns 515
No_of_seqs 553 out of 1895
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 22:12:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010206.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010206hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 2.1E-49 7.1E-54 397.6 45.5 440 15-515 42-609 (611)
2 3dw8_B Serine/threonine-protei 100.0 2.1E-49 7.1E-54 384.1 38.6 438 12-515 7-444 (447)
3 1nr0_A Actin interacting prote 100.0 7.8E-48 2.7E-52 386.1 43.2 418 32-515 15-565 (611)
4 2ymu_A WD-40 repeat protein; u 100.0 8.8E-46 3E-50 370.5 42.2 358 31-514 217-577 (577)
5 2ymu_A WD-40 repeat protein; u 100.0 3.6E-45 1.2E-49 366.1 43.0 370 31-514 12-454 (577)
6 3ow8_A WD repeat-containing pr 100.0 8.7E-44 3E-48 327.1 36.1 283 31-468 28-316 (321)
7 1vyh_C Platelet-activating fac 100.0 8.4E-44 2.9E-48 339.2 36.0 281 31-468 104-406 (410)
8 2ynn_A Coatomer subunit beta'; 100.0 1E-42 3.4E-47 318.1 37.3 284 31-468 9-298 (304)
9 1got_B GT-beta; complex (GTP-b 100.0 7.4E-43 2.5E-47 324.4 36.2 287 30-468 50-338 (340)
10 2oaj_A Protein SNI1; WD40 repe 100.0 5.5E-43 1.9E-47 363.2 36.6 404 31-514 13-658 (902)
11 4gqb_B Methylosome protein 50; 100.0 1.1E-42 3.9E-47 321.9 33.7 295 32-468 27-326 (344)
12 4g56_B MGC81050 protein; prote 100.0 1.3E-42 4.5E-47 324.3 32.5 289 32-468 39-338 (357)
13 3ow8_A WD repeat-containing pr 100.0 1E-41 3.6E-46 313.3 35.2 291 92-515 24-319 (321)
14 2pbi_B Guanine nucleotide-bind 100.0 1.9E-41 6.6E-46 316.2 37.0 290 30-468 59-352 (354)
15 3sfz_A APAF-1, apoptotic pepti 100.0 1.3E-41 4.5E-46 369.8 40.8 392 31-515 611-1156(1249)
16 3sfz_A APAF-1, apoptotic pepti 100.0 8.8E-42 3E-46 371.2 38.3 419 15-514 640-1204(1249)
17 1vyh_C Platelet-activating fac 100.0 3.1E-41 1E-45 321.5 36.0 285 93-514 101-408 (410)
18 2ynn_A Coatomer subunit beta'; 100.0 5.5E-41 1.9E-45 306.6 36.0 288 92-515 5-300 (304)
19 1pgu_A Actin interacting prote 100.0 1.1E-40 3.9E-45 336.2 40.7 386 31-514 14-611 (615)
20 3fm0_A Protein CIAO1; WDR39,SG 100.0 1E-40 3.5E-45 310.5 36.5 306 32-468 12-330 (345)
21 1got_B GT-beta; complex (GTP-b 100.0 4.8E-40 1.6E-44 305.4 37.1 290 91-514 46-340 (340)
22 2pm9_A Protein WEB1, protein t 100.0 1.7E-41 5.7E-46 325.3 28.1 344 32-515 9-412 (416)
23 4ery_A WD repeat-containing pr 100.0 8.6E-40 2.9E-44 300.5 38.3 285 31-468 19-307 (312)
24 3frx_A Guanine nucleotide-bind 100.0 2.3E-40 7.7E-45 304.6 34.0 298 31-431 13-318 (319)
25 3iz6_a 40S ribosomal protein R 100.0 1.9E-40 6.5E-45 313.0 30.9 307 31-431 62-376 (380)
26 1r5m_A SIR4-interacting protei 100.0 8.4E-40 2.9E-44 314.3 34.8 342 30-515 40-423 (425)
27 1erj_A Transcriptional repress 100.0 2.2E-39 7.4E-44 307.2 36.8 298 32-468 61-384 (393)
28 4g56_B MGC81050 protein; prote 100.0 4E-40 1.4E-44 307.5 30.2 245 231-515 91-341 (357)
29 2xzm_R RACK1; ribosome, transl 100.0 1.5E-39 5.1E-44 302.6 33.4 306 31-431 17-341 (343)
30 3iz6_a 40S ribosomal protein R 100.0 1.1E-39 3.6E-44 307.9 32.8 308 90-468 56-370 (380)
31 3fm0_A Protein CIAO1; WDR39,SG 100.0 7.2E-39 2.5E-43 298.0 36.5 299 91-514 6-332 (345)
32 2hes_X YDR267CP; beta-propelle 100.0 5.2E-39 1.8E-43 297.0 34.3 295 31-468 10-323 (330)
33 2pbi_B Guanine nucleotide-bind 100.0 1.1E-38 3.6E-43 297.7 36.0 292 92-514 56-354 (354)
34 3mkq_A Coatomer beta'-subunit; 100.0 5.1E-39 1.8E-43 334.8 37.6 362 31-514 9-420 (814)
35 3vl1_A 26S proteasome regulato 100.0 1.3E-39 4.6E-44 312.5 30.7 334 36-515 57-417 (420)
36 4gqb_B Methylosome protein 50; 100.0 5.8E-39 2E-43 297.0 33.1 242 232-514 80-328 (344)
37 4aow_A Guanine nucleotide-bind 100.0 2.1E-38 7.3E-43 295.1 35.1 302 31-432 34-339 (340)
38 4ery_A WD repeat-containing pr 100.0 4.5E-38 1.5E-42 289.0 36.7 294 86-515 9-310 (312)
39 2oaj_A Protein SNI1; WD40 repe 100.0 1E-38 3.6E-43 331.2 35.5 424 15-515 82-730 (902)
40 3frx_A Guanine nucleotide-bind 100.0 4.4E-38 1.5E-42 289.3 35.4 295 89-514 6-314 (319)
41 1gxr_A ESG1, transducin-like e 100.0 2.2E-38 7.7E-43 294.5 33.0 325 33-514 7-334 (337)
42 4e54_B DNA damage-binding prot 100.0 2.6E-38 8.9E-43 304.2 33.9 294 32-468 116-425 (435)
43 2j04_B YDR362CP, TAU91; beta p 100.0 6E-39 2.1E-43 311.5 28.1 338 32-514 130-514 (524)
44 2hes_X YDR267CP; beta-propelle 100.0 1.8E-37 6.2E-42 286.7 34.7 301 91-515 5-326 (330)
45 2xzm_R RACK1; ribosome, transl 100.0 3.9E-37 1.3E-41 286.3 35.7 301 89-514 10-337 (343)
46 3dm0_A Maltose-binding peripla 100.0 3.4E-37 1.2E-41 314.2 34.3 307 31-429 378-692 (694)
47 3zwl_B Eukaryotic translation 100.0 3.7E-36 1.3E-40 283.2 38.5 288 30-468 27-341 (369)
48 1pgu_A Actin interacting prote 100.0 7.4E-37 2.5E-41 308.4 35.3 385 30-468 58-609 (615)
49 2pm7_B Protein transport prote 100.0 8E-37 2.8E-41 278.0 31.8 258 31-430 5-285 (297)
50 1gxr_A ESG1, transducin-like e 100.0 5.4E-36 1.8E-40 278.4 37.9 285 30-468 46-332 (337)
51 1k8k_C P40, ARP2/3 complex 41 100.0 2.4E-36 8.3E-41 284.9 34.9 303 33-468 6-356 (372)
52 3mkq_A Coatomer beta'-subunit; 100.0 1.2E-36 4E-41 317.0 35.4 381 15-514 38-457 (814)
53 3ei3_B DNA damage-binding prot 100.0 4E-36 1.4E-40 284.5 35.5 301 31-468 69-377 (383)
54 3bg1_A Protein SEC13 homolog; 100.0 2.8E-37 9.7E-42 283.5 26.6 258 31-430 9-293 (316)
55 2ovr_B FBW7, F-BOX/WD repeat p 100.0 8E-36 2.7E-40 288.2 37.1 313 31-514 114-439 (445)
56 1erj_A Transcriptional repress 100.0 3.8E-36 1.3E-40 285.0 33.9 301 113-514 65-386 (393)
57 4h5i_A Guanine nucleotide-exch 100.0 3.1E-37 1.1E-41 288.7 25.9 305 35-431 14-344 (365)
58 3k26_A Polycomb protein EED; W 100.0 1.2E-35 4E-40 279.5 35.1 304 32-468 15-361 (366)
59 2pm9_A Protein WEB1, protein t 100.0 1.3E-36 4.3E-41 291.4 28.4 321 13-468 46-409 (416)
60 1sq9_A Antiviral protein SKI8; 100.0 3.2E-36 1.1E-40 286.7 30.2 330 31-431 12-396 (397)
61 3i2n_A WD repeat-containing pr 100.0 8.1E-36 2.8E-40 279.6 32.1 287 32-468 15-348 (357)
62 3gre_A Serine/threonine-protei 100.0 1.2E-35 4E-40 286.5 34.0 345 32-514 60-437 (437)
63 4a11_B DNA excision repair pro 100.0 4.2E-35 1.4E-39 280.0 37.2 316 31-468 39-360 (408)
64 3v7d_B Cell division control p 100.0 1.8E-35 6.1E-40 287.5 34.7 321 31-468 117-458 (464)
65 3dwl_C Actin-related protein 2 100.0 8.9E-37 3.1E-41 288.4 24.5 301 33-468 9-374 (377)
66 1r5m_A SIR4-interacting protei 100.0 3.6E-35 1.2E-39 282.1 31.9 291 34-468 107-420 (425)
67 2j04_A TAU60, YPL007P, hypothe 100.0 9.8E-37 3.4E-41 287.8 19.3 326 32-506 12-349 (588)
68 3jrp_A Fusion protein of prote 100.0 8.1E-35 2.8E-39 275.1 31.5 263 31-432 7-289 (379)
69 4gga_A P55CDC, cell division c 100.0 4.7E-34 1.6E-38 273.3 36.5 278 37-469 107-391 (420)
70 3zwl_B Eukaryotic translation 100.0 1.1E-33 3.8E-38 266.2 38.3 296 92-514 24-343 (369)
71 4aow_A Guanine nucleotide-bind 100.0 4E-34 1.4E-38 266.2 34.6 296 91-515 29-335 (340)
72 1yfq_A Cell cycle arrest prote 100.0 1.4E-34 4.7E-39 269.6 31.3 288 32-468 8-319 (342)
73 4ggc_A P55CDC, cell division c 100.0 4.9E-34 1.7E-38 262.9 33.0 283 38-431 28-316 (318)
74 3odt_A Protein DOA1; ubiquitin 100.0 6.8E-34 2.3E-38 261.3 33.7 274 31-468 14-291 (313)
75 3ei3_B DNA damage-binding prot 100.0 1.2E-33 4E-38 267.5 36.0 291 89-515 62-380 (383)
76 4e54_B DNA damage-binding prot 100.0 1.4E-34 4.8E-39 278.2 29.8 282 113-515 120-428 (435)
77 1sq9_A Antiviral protein SKI8; 100.0 3.4E-34 1.2E-38 272.7 31.9 305 92-514 8-392 (397)
78 3k26_A Polycomb protein EED; W 100.0 1.7E-34 5.8E-39 271.6 29.1 305 113-515 19-364 (366)
79 4h5i_A Guanine nucleotide-exch 100.0 6.4E-35 2.2E-39 273.0 25.8 298 113-468 15-338 (365)
80 3dm0_A Maltose-binding peripla 100.0 3.6E-34 1.2E-38 291.9 33.2 288 113-515 383-691 (694)
81 4aez_A CDC20, WD repeat-contai 100.0 3.3E-34 1.1E-38 272.7 30.1 286 33-435 89-385 (401)
82 2pm7_B Protein transport prote 100.0 1.4E-33 4.7E-38 256.7 32.8 241 113-468 10-280 (297)
83 1k8k_C P40, ARP2/3 complex 41 100.0 1.4E-33 4.7E-38 266.0 33.7 288 113-514 9-358 (372)
84 3vl1_A 26S proteasome regulato 100.0 3.7E-33 1.3E-37 267.7 36.6 282 36-468 98-414 (420)
85 3bg1_A Protein SEC13 homolog; 100.0 2.5E-34 8.5E-39 263.9 26.5 243 113-468 14-288 (316)
86 3odt_A Protein DOA1; ubiquitin 100.0 1.5E-32 5.1E-37 252.4 36.5 284 89-515 7-294 (313)
87 3f3f_A Nucleoporin SEH1; struc 100.0 3.3E-33 1.1E-37 260.9 32.4 273 31-433 7-340 (351)
88 3dwl_C Actin-related protein 2 100.0 1.7E-34 5.9E-39 272.7 23.7 243 113-468 12-277 (377)
89 3jro_A Fusion protein of prote 100.0 4E-34 1.4E-38 293.0 27.2 259 31-432 5-287 (753)
90 1p22_A F-BOX/WD-repeat protein 100.0 9.1E-33 3.1E-37 265.8 33.4 269 33-468 131-409 (435)
91 3v7d_B Cell division control p 100.0 1.6E-32 5.5E-37 266.7 35.4 323 94-513 115-458 (464)
92 3i2n_A WD repeat-containing pr 100.0 6.2E-33 2.1E-37 260.0 31.3 246 232-514 63-350 (357)
93 2j04_B YDR362CP, TAU91; beta p 100.0 5.2E-34 1.8E-38 276.9 24.3 293 32-468 204-512 (524)
94 3mmy_A MRNA export factor; mRN 100.0 1.7E-32 5.8E-37 258.1 33.7 294 31-468 35-341 (368)
95 1yfq_A Cell cycle arrest prote 100.0 7.5E-32 2.6E-36 251.0 32.6 271 113-510 12-315 (342)
96 4a11_B DNA excision repair pro 100.0 5.8E-32 2E-36 258.2 30.5 307 113-514 44-362 (408)
97 2aq5_A Coronin-1A; WD40 repeat 100.0 5.4E-32 1.8E-36 257.7 29.7 288 37-468 36-337 (402)
98 3lrv_A PRE-mRNA-splicing facto 100.0 2.6E-32 9E-37 253.8 26.8 279 41-468 42-328 (343)
99 4gga_A P55CDC, cell division c 100.0 2.7E-31 9.4E-36 254.1 33.3 247 32-431 144-396 (420)
100 4aez_A CDC20, WD repeat-contai 100.0 1.4E-31 4.6E-36 254.7 30.7 273 114-468 95-375 (401)
101 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.7E-31 1.6E-35 254.8 34.5 269 31-465 155-430 (445)
102 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.1E-30 3.9E-35 252.2 34.4 325 34-462 3-374 (450)
103 4gq1_A NUP37; propeller, trans 100.0 2.3E-31 7.7E-36 251.9 28.0 229 230-468 132-385 (393)
104 2j04_A TAU60, YPL007P, hypothe 100.0 1E-32 3.4E-37 260.6 18.1 282 111-505 14-310 (588)
105 3vu4_A KMHSV2; beta-propeller 100.0 1.5E-30 5.3E-35 242.6 32.2 285 32-468 16-331 (355)
106 3f3f_A Nucleoporin SEH1; struc 100.0 8.8E-31 3E-35 244.4 29.7 305 113-514 12-334 (351)
107 4ggc_A P55CDC, cell division c 100.0 5.9E-30 2E-34 235.6 34.7 276 115-468 28-310 (318)
108 3jrp_A Fusion protein of prote 100.0 1.3E-30 4.5E-35 246.2 30.6 249 93-468 4-282 (379)
109 4gq1_A NUP37; propeller, trans 100.0 1.8E-31 6.3E-36 252.5 24.1 259 231-514 86-386 (393)
110 2aq5_A Coronin-1A; WD40 repeat 100.0 2.7E-31 9.2E-36 252.9 25.3 280 199-514 51-339 (402)
111 3mmy_A MRNA export factor; mRN 100.0 2.8E-30 9.7E-35 242.8 31.3 284 92-509 31-337 (368)
112 2xyi_A Probable histone-bindin 100.0 4.5E-30 1.5E-34 246.3 32.8 264 107-468 123-405 (430)
113 2xyi_A Probable histone-bindin 100.0 1.2E-30 4.2E-35 250.2 28.1 269 30-431 123-411 (430)
114 1p22_A F-BOX/WD-repeat protein 100.0 1.1E-29 3.8E-34 244.2 31.1 269 113-514 134-411 (435)
115 3gre_A Serine/threonine-protei 100.0 3.6E-30 1.2E-34 248.1 26.6 318 14-468 88-435 (437)
116 2vdu_B TRNA (guanine-N(7)-)-me 100.0 6.1E-29 2.1E-33 240.1 34.6 238 231-506 99-373 (450)
117 3dw8_B Serine/threonine-protei 100.0 3.2E-29 1.1E-33 242.3 28.5 275 111-469 27-369 (447)
118 3jro_A Fusion protein of prote 100.0 5.4E-29 1.8E-33 255.0 28.3 242 113-468 10-280 (753)
119 3bws_A Protein LP49; two-domai 100.0 3.8E-28 1.3E-32 233.7 32.0 278 113-514 123-429 (433)
120 1l0q_A Surface layer protein; 100.0 1.3E-27 4.6E-32 226.6 34.4 280 47-445 2-289 (391)
121 3vu4_A KMHSV2; beta-propeller 100.0 6.4E-27 2.2E-31 218.1 34.0 227 237-514 61-333 (355)
122 3lrv_A PRE-mRNA-splicing facto 100.0 5.5E-28 1.9E-32 224.6 26.4 185 281-509 123-324 (343)
123 3bws_A Protein LP49; two-domai 100.0 3.4E-27 1.2E-31 227.0 32.8 280 33-468 120-427 (433)
124 2w18_A PALB2, fancn, partner a 100.0 2.9E-27 1E-31 209.7 27.8 185 244-468 143-352 (356)
125 1nir_A Nitrite reductase; hemo 100.0 3.8E-26 1.3E-30 223.7 34.1 327 42-515 144-512 (543)
126 1k32_A Tricorn protease; prote 100.0 3.4E-26 1.2E-30 243.2 33.1 374 31-507 48-491 (1045)
127 2hqs_A Protein TOLB; TOLB, PAL 100.0 4.4E-27 1.5E-31 223.6 22.8 217 231-500 175-410 (415)
128 1l0q_A Surface layer protein; 99.9 7.3E-25 2.5E-29 207.7 34.1 318 32-459 28-364 (391)
129 2w18_A PALB2, fancn, partner a 99.9 1.8E-26 6.2E-31 204.6 20.7 238 34-370 110-355 (356)
130 2ecf_A Dipeptidyl peptidase IV 99.9 2.6E-25 9E-30 228.8 32.3 335 35-506 36-443 (741)
131 1k32_A Tricorn protease; prote 99.9 1.2E-24 4.1E-29 231.3 31.0 363 32-515 200-635 (1045)
132 1xfd_A DIP, dipeptidyl aminope 99.9 1E-24 3.5E-29 223.8 28.8 336 36-506 17-428 (723)
133 1nir_A Nitrite reductase; hemo 99.9 1.7E-22 5.8E-27 197.9 33.3 291 38-470 181-511 (543)
134 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.3E-22 7.9E-27 191.1 32.2 260 31-454 113-409 (415)
135 2z3z_A Dipeptidyl aminopeptida 99.9 1E-22 3.6E-27 208.2 30.4 248 235-514 121-432 (706)
136 3u4y_A Uncharacterized protein 99.9 4E-21 1.4E-25 177.5 34.3 288 41-431 3-305 (331)
137 1ri6_A Putative isomerase YBHE 99.9 2.2E-21 7.5E-26 180.2 29.6 237 236-501 85-336 (343)
138 2ojh_A Uncharacterized protein 99.9 1.2E-21 4E-26 177.9 26.5 258 52-464 17-293 (297)
139 3vgz_A Uncharacterized protein 99.9 3.3E-21 1.1E-25 179.8 30.0 283 33-463 38-334 (353)
140 2ojh_A Uncharacterized protein 99.9 6.4E-22 2.2E-26 179.6 23.1 232 232-508 39-292 (297)
141 2ecf_A Dipeptidyl peptidase IV 99.9 1.9E-21 6.4E-26 200.2 28.9 306 113-514 37-410 (741)
142 1z68_A Fibroblast activation p 99.9 9.2E-22 3.1E-26 201.6 24.7 329 40-505 20-427 (719)
143 1ri6_A Putative isomerase YBHE 99.9 3.2E-20 1.1E-24 172.4 31.4 283 31-453 33-333 (343)
144 2z3z_A Dipeptidyl aminopeptida 99.9 9.6E-21 3.3E-25 193.7 27.2 307 36-432 82-437 (706)
145 3u4y_A Uncharacterized protein 99.9 8.6E-20 2.9E-24 168.6 30.2 272 126-470 10-301 (331)
146 1xfd_A DIP, dipeptidyl aminope 99.9 1.5E-20 5.3E-25 192.8 27.0 288 176-514 21-390 (723)
147 3vgz_A Uncharacterized protein 99.9 1.4E-19 4.6E-24 168.8 30.2 235 237-508 91-334 (353)
148 3o4h_A Acylamino-acid-releasin 99.9 5.1E-21 1.7E-25 191.0 21.8 271 33-465 19-304 (582)
149 3hfq_A Uncharacterized protein 99.9 1.3E-19 4.3E-24 168.6 29.7 266 32-429 36-316 (347)
150 1pby_B Quinohemoprotein amine 99.9 6.4E-20 2.2E-24 169.8 25.6 278 48-439 2-318 (337)
151 3hfq_A Uncharacterized protein 99.9 8.9E-19 3E-23 162.9 31.3 216 233-468 84-312 (347)
152 1pby_B Quinohemoprotein amine 99.9 5.5E-20 1.9E-24 170.3 22.5 234 237-515 36-308 (337)
153 3o4h_A Acylamino-acid-releasin 99.9 1.2E-19 4.1E-24 181.1 25.0 259 113-508 22-302 (582)
154 4a5s_A Dipeptidyl peptidase 4 99.8 1.6E-18 5.6E-23 177.5 33.1 333 37-506 18-434 (740)
155 3scy_A Hypothetical bacterial 99.8 1.5E-17 5.1E-22 155.5 36.8 206 235-468 100-332 (361)
156 3scy_A Hypothetical bacterial 99.8 7.5E-18 2.6E-22 157.5 33.5 290 34-451 48-360 (361)
157 2oit_A Nucleoporin 214KDA; NH2 99.8 4.6E-18 1.6E-22 162.0 31.5 231 32-372 89-333 (434)
158 2oit_A Nucleoporin 214KDA; NH2 99.8 3.8E-19 1.3E-23 169.5 22.8 230 34-372 35-278 (434)
159 1jmx_B Amine dehydrogenase; ox 99.8 1.8E-18 6.2E-23 160.9 26.2 292 40-431 4-326 (349)
160 1jof_A Carboxy-CIS,CIS-muconat 99.8 4.3E-17 1.5E-21 152.3 30.9 262 113-431 40-342 (365)
161 3pe7_A Oligogalacturonate lyas 99.8 5.2E-18 1.8E-22 160.3 23.9 292 41-468 41-377 (388)
162 1jmx_B Amine dehydrogenase; ox 99.8 4.6E-17 1.6E-21 151.4 23.6 250 236-515 44-323 (349)
163 1z68_A Fibroblast activation p 99.8 3.4E-17 1.1E-21 167.8 24.3 282 37-459 61-426 (719)
164 3azo_A Aminopeptidase; POP fam 99.8 1.7E-16 5.8E-21 161.0 26.1 205 233-468 128-362 (662)
165 4a5s_A Dipeptidyl peptidase 4 99.8 4.8E-16 1.6E-20 159.2 28.5 213 238-468 65-346 (740)
166 3c5m_A Oligogalacturonate lyas 99.7 6E-17 2E-21 153.5 19.9 292 34-468 34-377 (396)
167 2oiz_A Aromatic amine dehydrog 99.7 3.1E-15 1E-19 139.0 28.8 280 117-455 54-360 (361)
168 3pe7_A Oligogalacturonate lyas 99.7 1.8E-16 6.2E-21 149.7 20.9 222 238-506 84-369 (388)
169 1q7f_A NHL, brain tumor CG1071 99.7 1.1E-14 3.6E-19 131.3 30.8 268 14-431 10-281 (286)
170 1jof_A Carboxy-CIS,CIS-muconat 99.7 5.6E-16 1.9E-20 144.8 21.6 260 34-372 38-341 (365)
171 2oiz_A Aromatic amine dehydrog 99.7 7.2E-15 2.5E-19 136.5 26.5 309 134-500 29-360 (361)
172 2dg1_A DRP35, lactonase; beta 99.7 1.4E-14 4.8E-19 133.6 27.8 276 36-463 6-300 (333)
173 3azo_A Aminopeptidase; POP fam 99.7 9.9E-15 3.4E-19 148.0 27.8 182 243-468 87-318 (662)
174 1qks_A Cytochrome CD1 nitrite 99.7 2.7E-13 9.3E-18 132.3 36.3 323 45-514 165-535 (567)
175 2dg1_A DRP35, lactonase; beta 99.7 2.7E-13 9.2E-18 125.0 31.9 270 176-508 10-300 (333)
176 3fvz_A Peptidyl-glycine alpha- 99.7 6.9E-14 2.4E-18 128.5 27.2 260 35-430 23-322 (329)
177 1q7f_A NHL, brain tumor CG1071 99.7 1.3E-13 4.5E-18 124.0 28.1 244 232-514 27-277 (286)
178 3e5z_A Putative gluconolactona 99.7 1.2E-13 4.1E-18 124.9 27.7 238 231-514 24-283 (296)
179 3fvz_A Peptidyl-glycine alpha- 99.7 1.1E-13 3.7E-18 127.2 27.3 214 232-468 88-317 (329)
180 3e5z_A Putative gluconolactona 99.6 1.8E-13 6.1E-18 123.8 25.3 241 33-431 25-287 (296)
181 2z2n_A Virginiamycin B lyase; 99.6 7E-12 2.4E-16 113.4 35.1 277 34-468 13-291 (299)
182 3c5m_A Oligogalacturonate lyas 99.6 1.5E-14 5E-19 136.9 15.0 175 290-507 148-370 (396)
183 2z2n_A Virginiamycin B lyase; 99.6 2.4E-11 8.2E-16 109.9 35.6 233 235-514 57-292 (299)
184 2bkl_A Prolyl endopeptidase; m 99.6 2.1E-13 7.3E-18 138.6 24.2 250 33-432 118-399 (695)
185 2xdw_A Prolyl endopeptidase; a 99.6 6.2E-13 2.1E-17 135.6 26.7 161 233-432 231-416 (710)
186 2gop_A Trilobed protease; beta 99.6 7.9E-13 2.7E-17 122.6 25.2 281 32-465 11-322 (347)
187 2gop_A Trilobed protease; beta 99.6 1.5E-12 5.3E-17 120.6 25.9 210 236-507 60-319 (347)
188 1qks_A Cytochrome CD1 nitrite 99.6 1.8E-11 6.3E-16 119.4 33.7 297 34-470 195-535 (567)
189 1rwi_B Serine/threonine-protei 99.6 3E-12 1E-16 114.0 26.1 156 235-431 108-265 (270)
190 2xdw_A Prolyl endopeptidase; a 99.5 1E-12 3.5E-17 133.9 23.9 240 232-514 122-411 (710)
191 2bkl_A Prolyl endopeptidase; m 99.5 2E-12 7E-17 131.4 25.3 238 232-514 118-394 (695)
192 2qc5_A Streptogramin B lactona 99.5 1.9E-10 6.5E-15 103.9 34.5 270 35-461 19-290 (300)
193 3no2_A Uncharacterized protein 99.5 1.5E-11 5.1E-16 109.2 26.3 184 236-460 38-230 (276)
194 1rwi_B Serine/threonine-protei 99.5 2.2E-11 7.7E-16 108.3 26.8 233 236-514 25-261 (270)
195 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 2.4E-11 8E-16 110.8 26.9 159 235-431 117-300 (314)
196 3dsm_A Uncharacterized protein 99.5 6.6E-11 2.2E-15 108.4 27.5 232 236-514 45-299 (328)
197 3dsm_A Uncharacterized protein 99.5 1E-10 3.6E-15 107.0 28.5 195 235-468 84-297 (328)
198 2qc5_A Streptogramin B lactona 99.4 8.7E-10 3E-14 99.6 33.9 234 235-514 62-297 (300)
199 1yr2_A Prolyl oligopeptidase; 99.4 1.2E-11 4.1E-16 126.6 22.5 160 235-432 268-443 (741)
200 3no2_A Uncharacterized protein 99.4 1.1E-10 3.9E-15 103.5 25.5 218 245-505 4-230 (276)
201 3sjl_D Methylamine dehydrogena 99.4 6.2E-11 2.1E-15 108.4 24.2 281 122-472 40-362 (386)
202 1yr2_A Prolyl oligopeptidase; 99.4 2.5E-11 8.5E-16 124.3 23.9 237 233-514 161-438 (741)
203 3sjl_D Methylamine dehydrogena 99.4 4.6E-10 1.6E-14 102.6 27.9 314 40-453 37-384 (386)
204 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 7.8E-10 2.7E-14 100.7 28.8 242 234-514 17-296 (314)
205 3g4e_A Regucalcin; six bladed 99.4 7.6E-10 2.6E-14 99.8 27.1 232 37-418 14-260 (297)
206 2mad_H Methylamine dehydrogena 99.3 1.4E-08 4.7E-13 94.2 32.7 294 42-434 27-354 (373)
207 3dr2_A Exported gluconolactona 99.3 1.2E-09 4.1E-14 98.9 25.2 232 232-514 42-303 (305)
208 3g4e_A Regucalcin; six bladed 99.3 2E-09 6.9E-14 97.0 26.3 228 233-506 11-260 (297)
209 3c75_H MADH, methylamine dehyd 99.3 1.3E-09 4.3E-14 101.7 25.3 295 45-438 82-409 (426)
210 3hrp_A Uncharacterized protein 99.3 3.1E-09 1.1E-13 100.1 28.3 268 113-428 131-408 (409)
211 2qe8_A Uncharacterized protein 99.3 8.5E-10 2.9E-14 101.7 23.9 271 36-464 17-312 (343)
212 3dr2_A Exported gluconolactona 99.3 1.4E-09 4.8E-14 98.4 24.5 232 33-421 42-298 (305)
213 3iuj_A Prolyl endopeptidase; h 99.3 3.8E-10 1.3E-14 114.4 22.6 160 233-432 232-407 (693)
214 1xip_A Nucleoporin NUP159; bet 99.3 1.9E-10 6.6E-15 105.6 16.8 179 236-459 39-230 (388)
215 2mad_H Methylamine dehydrogena 99.2 2E-08 6.8E-13 93.1 30.5 294 123-470 29-347 (373)
216 2ghs_A AGR_C_1268P; regucalcin 99.2 7.4E-09 2.5E-13 94.6 25.9 144 235-418 134-290 (326)
217 2ghs_A AGR_C_1268P; regucalcin 99.2 2.6E-08 8.9E-13 90.9 29.1 225 236-506 50-290 (326)
218 1xip_A Nucleoporin NUP159; bet 99.2 3E-10 1E-14 104.3 15.9 184 285-505 39-231 (388)
219 3hrp_A Uncharacterized protein 99.2 1.1E-08 3.7E-13 96.4 26.5 260 36-370 131-408 (409)
220 3c75_H MADH, methylamine dehyd 99.2 5.7E-09 2E-13 97.3 23.6 282 121-471 79-400 (426)
221 1mda_H Methylamine dehydrogena 99.1 3.1E-08 1.1E-12 90.8 23.6 258 117-443 69-358 (368)
222 3iuj_A Prolyl endopeptidase; h 99.1 5.3E-09 1.8E-13 106.0 20.2 237 232-514 126-402 (693)
223 2ece_A 462AA long hypothetical 99.1 1.7E-07 5.7E-12 86.4 26.5 169 239-418 192-399 (462)
224 2qe8_A Uncharacterized protein 99.0 6.7E-08 2.3E-12 88.9 23.2 254 235-506 17-309 (343)
225 2ece_A 462AA long hypothetical 99.0 2.8E-07 9.5E-12 84.9 25.0 233 244-506 93-399 (462)
226 1kb0_A Quinohemoprotein alcoho 99.0 3E-07 1E-11 92.3 27.7 195 238-457 246-534 (677)
227 1yiq_A Quinohemoprotein alcoho 99.0 3.2E-07 1.1E-11 92.4 27.1 199 239-457 239-532 (689)
228 4a2l_A BT_4663, two-component 98.9 2.5E-05 8.5E-10 80.6 40.1 385 38-514 175-568 (795)
229 4a2l_A BT_4663, two-component 98.9 2.8E-05 9.6E-10 80.2 40.4 390 35-514 214-611 (795)
230 2hz6_A Endoplasmic reticulum t 98.9 1.6E-09 5.5E-14 100.7 6.7 149 244-439 47-200 (369)
231 3hxj_A Pyrrolo-quinoline quino 98.9 7.5E-08 2.6E-12 88.1 17.8 209 199-468 111-319 (330)
232 3q7m_A Lipoprotein YFGL, BAMB; 98.8 2.7E-06 9.2E-11 79.3 27.2 259 126-468 103-373 (376)
233 1mda_H Methylamine dehydrogena 98.8 1.9E-07 6.4E-12 85.6 17.6 255 40-385 69-358 (368)
234 1yiq_A Quinohemoprotein alcoho 98.8 1E-06 3.6E-11 88.6 24.3 334 126-503 70-533 (689)
235 1npe_A Nidogen, entactin; glyc 98.8 2.3E-05 7.8E-10 69.0 29.4 177 235-454 79-262 (267)
236 3v9f_A Two-component system se 98.8 0.00016 5.3E-09 74.5 39.5 393 35-514 257-653 (781)
237 1fwx_A Nitrous oxide reductase 98.8 8.5E-07 2.9E-11 84.8 20.3 200 235-462 134-407 (595)
238 3v9f_A Two-component system se 98.7 0.00025 8.6E-09 73.0 38.3 396 36-514 115-521 (781)
239 1kb0_A Quinohemoprotein alcoho 98.7 3E-06 1E-10 85.1 21.9 78 306-415 457-535 (677)
240 3hxj_A Pyrrolo-quinoline quino 98.6 2.8E-06 9.5E-11 77.6 19.5 212 246-513 107-319 (330)
241 1fwx_A Nitrous oxide reductase 98.6 3E-06 1E-10 81.1 19.3 261 45-371 99-430 (595)
242 2hz6_A Endoplasmic reticulum t 98.6 1.5E-08 5.2E-13 94.1 3.5 176 245-469 8-188 (369)
243 2fp8_A Strictosidine synthase; 98.6 3.2E-05 1.1E-09 70.2 25.3 156 237-431 128-314 (322)
244 3q7m_A Lipoprotein YFGL, BAMB; 98.6 4.7E-06 1.6E-10 77.7 20.2 275 126-469 53-333 (376)
245 2iwa_A Glutamine cyclotransfer 98.6 1.8E-05 6E-10 68.4 21.9 212 32-316 15-238 (266)
246 2iwa_A Glutamine cyclotransfer 98.6 1E-05 3.6E-10 69.9 20.3 194 235-468 21-232 (266)
247 1kv9_A Type II quinohemoprotei 98.6 5.1E-05 1.8E-09 76.1 27.5 177 239-440 234-497 (668)
248 3nol_A Glutamine cyclotransfer 98.5 1.2E-05 4.2E-10 68.5 19.0 184 235-460 43-242 (262)
249 3nol_A Glutamine cyclotransfer 98.5 3.4E-05 1.2E-09 65.8 20.5 194 32-302 37-243 (262)
250 2p4o_A Hypothetical protein; p 98.5 0.00043 1.5E-08 62.2 29.1 193 236-461 73-276 (306)
251 3nok_A Glutaminyl cyclase; bet 98.5 2.5E-05 8.4E-10 66.7 19.1 183 235-460 55-253 (268)
252 3qqz_A Putative uncharacterize 98.4 0.00042 1.4E-08 59.5 25.2 176 236-428 71-251 (255)
253 3mbr_X Glutamine cyclotransfer 98.4 0.00012 4.2E-09 61.8 21.4 192 226-459 12-220 (243)
254 2p4o_A Hypothetical protein; p 98.3 0.0014 4.7E-08 58.8 29.2 104 285-420 170-278 (306)
255 2fp8_A Strictosidine synthase; 98.3 0.00043 1.5E-08 62.7 24.6 194 235-462 19-248 (322)
256 2ad6_A Methanol dehydrogenase 98.3 0.0003 1E-08 69.0 24.2 29 126-154 115-143 (571)
257 3nok_A Glutaminyl cyclase; bet 98.3 0.00012 4.1E-09 62.5 18.3 190 38-303 57-254 (268)
258 1npe_A Nidogen, entactin; glyc 98.3 0.00088 3E-08 58.7 25.1 219 235-500 36-263 (267)
259 1k3i_A Galactose oxidase precu 98.2 8.8E-05 3E-09 74.5 20.4 59 404-462 460-530 (656)
260 3mbr_X Glutamine cyclotransfer 98.2 0.00035 1.2E-08 59.1 20.1 184 284-507 21-223 (243)
261 3v65_B Low-density lipoprotein 98.2 0.0038 1.3E-07 57.9 29.5 171 238-450 162-337 (386)
262 1kv9_A Type II quinohemoprotei 98.1 0.00037 1.3E-08 69.9 22.5 304 126-469 66-484 (668)
263 3v64_C Agrin; beta propeller, 98.1 0.0047 1.6E-07 56.4 31.5 157 237-434 118-279 (349)
264 1k3i_A Galactose oxidase precu 98.1 0.00098 3.3E-08 66.9 25.3 210 236-463 244-476 (656)
265 1flg_A Protein (quinoprotein e 98.1 0.00025 8.7E-09 69.6 19.8 75 363-455 466-541 (582)
266 1ijq_A LDL receptor, low-densi 98.1 0.0053 1.8E-07 55.2 28.3 234 129-434 4-242 (316)
267 1w6s_A Methanol dehydrogenase 98.1 0.0036 1.2E-07 61.4 27.6 80 240-320 246-347 (599)
268 3qqz_A Putative uncharacterize 98.1 0.0039 1.3E-07 53.5 24.6 213 279-514 22-250 (255)
269 2xe4_A Oligopeptidase B; hydro 98.0 0.00024 8.1E-09 72.5 18.9 193 236-468 175-393 (751)
270 2xe4_A Oligopeptidase B; hydro 98.0 0.0064 2.2E-07 62.0 28.9 73 236-315 272-354 (751)
271 3p5b_L Low density lipoprotein 98.0 0.012 4.2E-07 54.8 28.0 247 128-448 85-337 (400)
272 4hw6_A Hypothetical protein, I 98.0 0.0054 1.8E-07 57.8 25.3 268 114-429 140-432 (433)
273 3kya_A Putative phosphatase; s 97.9 0.013 4.3E-07 55.6 26.7 217 235-468 186-470 (496)
274 1w6s_A Methanol dehydrogenase 97.9 0.011 3.8E-07 58.0 27.1 29 127-155 63-93 (599)
275 2ad6_A Methanol dehydrogenase 97.9 0.0065 2.2E-07 59.6 25.5 49 420-470 443-491 (571)
276 3tc9_A Hypothetical hydrolase; 97.9 0.0065 2.2E-07 57.2 24.6 265 114-429 138-429 (430)
277 3ei3_A DNA damage-binding prot 97.9 0.044 1.5E-06 58.3 36.5 33 35-67 553-592 (1158)
278 3sre_A PON1, serum paraoxonase 97.8 0.0084 2.9E-07 54.3 23.2 199 236-463 51-287 (355)
279 3v65_B Low-density lipoprotein 97.8 0.016 5.6E-07 53.7 26.1 192 235-468 116-313 (386)
280 3m0c_C LDL receptor, low-densi 97.8 0.019 6.5E-07 58.3 27.7 162 233-434 469-636 (791)
281 3v64_C Agrin; beta propeller, 97.7 0.028 9.6E-07 51.2 27.8 192 235-468 73-270 (349)
282 2ism_A Putative oxidoreductase 97.7 0.027 9.3E-07 51.4 24.6 113 235-359 31-151 (352)
283 2xbg_A YCF48-like protein; pho 97.6 0.032 1.1E-06 50.3 31.9 231 235-511 80-316 (327)
284 1n7d_A LDL receptor, low-densi 97.6 0.00087 3E-08 67.4 14.6 175 236-450 454-633 (699)
285 1flg_A Protein (quinoprotein e 97.5 0.06 2E-06 52.8 26.0 79 420-505 465-547 (582)
286 1ijq_A LDL receptor, low-densi 97.5 0.048 1.6E-06 48.9 26.0 183 248-468 3-190 (316)
287 3m0c_C LDL receptor, low-densi 97.5 0.076 2.6E-06 54.0 26.3 183 248-468 397-584 (791)
288 2p9w_A MAL S 1 allergenic prot 97.5 0.053 1.8E-06 48.0 24.6 217 234-468 12-260 (334)
289 3s94_A LRP-6, low-density lipo 97.4 0.11 3.8E-06 51.3 37.2 370 35-506 39-453 (619)
290 3a9g_A Putative uncharacterize 97.4 0.083 2.8E-06 48.1 23.6 112 235-359 29-151 (354)
291 3tc9_A Hypothetical hydrolase; 97.4 0.017 5.7E-07 54.4 19.1 148 285-468 138-296 (430)
292 4hw6_A Hypothetical protein, I 97.3 0.1 3.6E-06 49.0 29.4 128 237-371 275-432 (433)
293 2p9w_A MAL S 1 allergenic prot 97.3 0.037 1.3E-06 49.0 19.5 174 283-470 12-212 (334)
294 3sov_A LRP-6, low-density lipo 97.3 0.096 3.3E-06 46.9 25.5 158 235-434 79-242 (318)
295 3p5b_L Low density lipoprotein 97.2 0.13 4.4E-06 47.8 26.1 184 247-468 84-272 (400)
296 3sov_A LRP-6, low-density lipo 97.2 0.11 3.7E-06 46.6 22.7 192 236-468 36-233 (318)
297 2xzh_A Clathrin heavy chain 1; 97.2 0.11 3.7E-06 45.7 20.6 172 235-434 107-294 (365)
298 2xbg_A YCF48-like protein; pho 97.1 0.14 4.7E-06 46.1 29.7 236 234-510 35-272 (327)
299 4a0p_A LRP6, LRP-6, low-densit 97.1 0.28 9.6E-06 48.5 40.4 100 402-507 391-496 (628)
300 3pbp_A Nucleoporin NUP82; beta 97.0 0.099 3.4E-06 47.9 19.1 164 241-425 27-207 (452)
301 3sre_A PON1, serum paraoxonase 96.8 0.27 9.2E-06 44.5 22.0 71 284-369 221-295 (355)
302 1n7d_A LDL receptor, low-densi 96.8 0.0094 3.2E-07 60.0 11.7 182 249-468 380-566 (699)
303 3amr_A 3-phytase; beta-propell 96.6 0.35 1.2E-05 43.2 23.9 159 254-438 98-271 (355)
304 3kya_A Putative phosphatase; s 96.6 0.24 8.3E-06 46.9 19.3 155 285-468 140-336 (496)
305 3s94_A LRP-6, low-density lipo 96.4 0.83 2.8E-05 45.1 36.9 143 344-508 350-499 (619)
306 1tl2_A L10, protein (tachylect 96.2 0.38 1.3E-05 39.7 15.5 114 235-365 41-156 (236)
307 1bpo_A Protein (clathrin); cla 96.2 0.78 2.7E-05 42.2 25.1 173 236-434 107-293 (494)
308 3pbp_A Nucleoporin NUP82; beta 96.2 0.18 6.2E-06 46.2 14.9 126 236-368 67-208 (452)
309 3das_A Putative oxidoreductase 95.9 0.9 3.1E-05 40.9 26.6 115 235-359 32-156 (347)
310 3amr_A 3-phytase; beta-propell 95.8 0.96 3.3E-05 40.5 22.0 111 199-314 147-262 (355)
311 3s25_A Hypothetical 7-bladed b 95.8 0.86 2.9E-05 40.2 17.7 124 348-505 109-240 (302)
312 2g8s_A Glucose/sorbosone dehyd 95.8 1.1 3.8E-05 40.6 28.5 29 36-64 18-46 (353)
313 2g8s_A Glucose/sorbosone dehyd 95.8 1.1 3.8E-05 40.6 27.3 118 235-360 18-147 (353)
314 4a0p_A LRP6, LRP-6, low-densit 95.7 1.8 6.2E-05 42.8 32.2 153 236-432 81-239 (628)
315 3a9g_A Putative uncharacterize 95.6 1.3 4.3E-05 40.3 28.0 27 36-63 29-55 (354)
316 1cru_A Protein (soluble quinop 95.5 0.78 2.7E-05 43.3 17.5 116 235-360 27-161 (454)
317 3das_A Putative oxidoreductase 95.3 1.5 5.3E-05 39.3 23.4 34 35-68 31-64 (347)
318 2ism_A Putative oxidoreductase 95.2 1.7 5.7E-05 39.4 25.5 30 114-148 32-61 (352)
319 1tl2_A L10, protein (tachylect 95.2 1.1 3.6E-05 37.1 16.3 154 284-468 41-205 (236)
320 3ei3_A DNA damage-binding prot 95.1 4.2 0.00014 43.4 33.2 41 112-152 553-598 (1158)
321 1cru_A Protein (soluble quinop 94.8 2 6.9E-05 40.4 17.8 67 284-359 27-96 (454)
322 1xi4_A Clathrin heavy chain; a 94.7 2.9 9.8E-05 44.9 19.6 173 236-434 107-293 (1630)
323 3ott_A Two-component system se 94.6 4.6 0.00016 41.0 38.1 247 235-514 324-583 (758)
324 2xzh_A Clathrin heavy chain 1; 93.3 4 0.00014 36.0 27.8 166 235-431 152-333 (365)
325 1bpo_A Protein (clathrin); cla 92.0 7.6 0.00026 35.9 29.0 167 234-431 150-332 (494)
326 3sbq_A Nitrous-oxide reductase 90.5 3.6 0.00012 39.3 12.2 106 344-461 324-453 (638)
327 1xi4_A Clathrin heavy chain; a 88.2 29 0.00099 37.7 18.0 153 254-450 47-206 (1630)
328 2wg3_C Hedgehog-interacting pr 86.6 21 0.00073 33.5 30.8 119 235-362 14-158 (463)
329 2vpj_A Kelch-like protein 12; 86.5 16 0.00053 31.8 20.0 23 294-317 159-186 (301)
330 3ott_A Two-component system se 86.0 32 0.0011 34.8 38.8 243 235-514 146-398 (758)
331 3q6k_A 43.2 kDa salivary prote 85.3 22 0.00074 32.3 20.3 133 283-430 151-306 (381)
332 3s25_A Hypothetical 7-bladed b 82.6 24 0.00083 30.8 23.2 106 240-381 150-262 (302)
333 2vpj_A Kelch-like protein 12; 78.8 31 0.0011 29.8 17.7 64 245-317 206-280 (301)
334 2xn4_A Kelch-like protein 2; s 78.0 33 0.0011 29.6 16.4 64 245-317 204-278 (302)
335 3sbq_A Nitrous-oxide reductase 77.8 5.1 0.00017 38.3 6.9 80 235-316 323-409 (638)
336 2be1_A Serine/threonine-protei 77.5 23 0.00078 31.6 10.9 25 297-321 11-35 (339)
337 2xn4_A Kelch-like protein 2; s 76.4 37 0.0013 29.3 17.1 22 410-431 251-277 (302)
338 3ii7_A Kelch-like protein 7; p 76.1 38 0.0013 29.3 18.3 64 245-317 200-274 (306)
339 4gq2_M Nucleoporin NUP120; bet 72.0 50 0.0017 34.5 13.4 40 114-155 237-276 (950)
340 2wg3_C Hedgehog-interacting pr 69.2 76 0.0026 29.8 13.3 31 284-314 14-44 (463)
341 1zgk_A Kelch-like ECH-associat 65.4 68 0.0023 27.8 15.1 64 245-317 215-289 (308)
342 2be1_A Serine/threonine-protei 63.5 81 0.0028 28.0 17.3 29 127-155 11-39 (339)
343 4gq2_M Nucleoporin NUP120; bet 60.1 46 0.0016 34.8 10.3 34 401-434 237-270 (950)
344 3ii7_A Kelch-like protein 7; p 59.0 88 0.003 26.9 23.5 23 410-432 247-274 (306)
345 2uvk_A YJHT; unknown function, 57.7 1E+02 0.0035 27.3 19.8 28 408-435 314-347 (357)
346 4hvt_A Ritya.17583.B, post-pro 57.2 1.6E+02 0.0055 29.4 21.0 222 238-503 132-411 (711)
347 3f7f_A Nucleoporin NUP120; nuc 57.2 1.1E+02 0.0038 30.4 11.7 39 113-155 222-260 (729)
348 1zgk_A Kelch-like ECH-associat 56.2 99 0.0034 26.7 20.6 64 245-317 168-242 (308)
349 2uvk_A YJHT; unknown function, 53.7 1.2E+02 0.0041 26.9 14.2 12 306-317 168-179 (357)
350 3l6v_A GYRA, DNA gyrase subuni 53.6 1.3E+02 0.0044 27.2 18.2 58 410-468 112-176 (370)
351 1zi0_A DNA gyrase subunit A; b 50.2 1.3E+02 0.0044 26.2 19.1 99 410-510 108-218 (307)
352 2zwa_A Leucine carboxyl methyl 48.4 2.2E+02 0.0075 28.4 22.6 24 293-317 499-524 (695)
353 4fhn_B Nucleoporin NUP120; pro 47.9 49 0.0017 35.4 8.4 33 402-434 240-272 (1139)
354 4fhn_B Nucleoporin NUP120; pro 47.7 39 0.0013 36.2 7.6 39 115-155 240-278 (1139)
355 4asc_A Kelch repeat and BTB do 45.7 1.5E+02 0.0051 25.6 16.0 26 126-151 99-132 (315)
356 1wp5_A Topoisomerase IV; broke 44.1 1.7E+02 0.0057 25.8 19.1 97 411-509 106-216 (323)
357 3q6k_A 43.2 kDa salivary prote 42.6 1.9E+02 0.0066 26.1 20.0 74 235-315 220-306 (381)
358 3zwu_A Alkaline phosphatase PH 37.6 85 0.0029 30.5 7.5 60 344-417 477-548 (592)
359 3uc1_A DNA gyrase subunit A; D 37.5 2.1E+02 0.0073 25.1 17.3 209 293-511 1-221 (327)
360 3zwu_A Alkaline phosphatase PH 36.9 1E+02 0.0035 29.9 7.9 56 404-460 480-548 (592)
361 3f7f_A Nucleoporin NUP120; nuc 36.0 1.1E+02 0.0038 30.4 8.0 25 408-432 228-252 (729)
362 4a9v_A PHOX; hydrolase, beta-p 35.3 1.4E+02 0.0047 28.9 8.3 61 343-418 476-549 (592)
363 4asc_A Kelch repeat and BTB do 34.1 2.3E+02 0.0077 24.4 15.3 54 409-464 147-207 (315)
364 4a9v_A PHOX; hydrolase, beta-p 31.4 2.5E+02 0.0086 27.1 9.4 61 399-460 475-548 (592)
365 1suu_A DNA gyrase subunit A; t 30.7 2.7E+02 0.0092 24.2 21.6 202 293-509 6-222 (312)
366 3b7f_A Glycosyl hydrolase, BNR 30.2 3E+02 0.01 24.7 20.8 70 443-512 177-257 (394)
367 2loj_A Putative cytoplasmic pr 27.5 1.2E+02 0.004 19.0 4.2 40 12-52 23-62 (63)
368 2zwa_A Leucine carboxyl methyl 26.1 4.9E+02 0.017 25.8 16.4 25 125-149 500-526 (695)
369 2woz_A Kelch repeat and BTB do 25.4 3.2E+02 0.011 23.4 19.8 226 49-431 18-288 (318)
370 3qhy_B Beta-lactamase inhibito 21.5 3.8E+02 0.013 22.8 21.9 178 236-468 25-202 (282)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.1e-49 Score=397.56 Aligned_cols=440 Identities=14% Similarity=0.116 Sum_probs=307.3
Q ss_pred cccchhhhhcccccccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCc-cccCcccccccccCCccceee
Q 010206 15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGG-QRRDLEMMDYSMSRHPEFRYK 93 (515)
Q Consensus 15 ~~w~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 93 (515)
..|++.. ........+|.+.|++++|+|||++||+|+.||.|+|||+.+++.... ...........++|+|+.+.+
T Consensus 42 ~l~~~~~---~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l 118 (611)
T 1nr0_A 42 YTVPVGS---LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRI 118 (611)
T ss_dssp EEEETTC---SSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEE
T ss_pred EEecCCC---cccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEE
Confidence 3476643 112223458999999999999999999999999999999865432110 011112333467888877665
Q ss_pred eecccCCC------ccc---cccc-ccccceeEEEEEeecCCCc-EEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCC
Q 010206 94 TEFQSHEP------EFD---YLKS-LEIEEKINKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAA 162 (515)
Q Consensus 94 ~~~~~h~~------~~~---~~~~-~~~~~~v~~l~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 162 (515)
........ .++ .+.. ..|...|++++|+| ++. .|++++.|++|++||..+++.......+
T Consensus 119 ~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p--~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H------- 189 (611)
T 1nr0_A 119 AAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKP--SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEH------- 189 (611)
T ss_dssp EEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECS--SSSCEEEEEETTSCEEEEETTTBEEEEEECCC-------
T ss_pred EEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECC--CCCeEEEEEeCCCeEEEEECCCCeEeeeeccc-------
Confidence 43221100 000 0011 13458899999965 444 6999999999999999887766554433
Q ss_pred CCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeee------ccCcCC
Q 010206 163 GNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYA------HAHDYH 236 (515)
Q Consensus 163 ~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~------~~~~~~ 236 (515)
.+.|. +++|+|+|+.+ ++++.|+.|++|| +...+ +...+. .+|...
T Consensus 190 -~~~V~-------~v~fspdg~~l------------as~s~D~~i~lwd--~~~g~------~~~~~~~~~~~~~~h~~~ 241 (611)
T 1nr0_A 190 -TKFVH-------SVRYNPDGSLF------------ASTGGDGTIVLYN--GVDGT------KTGVFEDDSLKNVAHSGS 241 (611)
T ss_dssp -SSCEE-------EEEECTTSSEE------------EEEETTSCEEEEE--TTTCC------EEEECBCTTSSSCSSSSC
T ss_pred -cCceE-------EEEECCCCCEE------------EEEECCCcEEEEE--CCCCc------EeeeeccccccccccCCC
Confidence 23444 88999999998 9999999999999 43322 222211 279999
Q ss_pred eEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccccee-------------------------------ccc----Ccccc
Q 010206 237 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV-------------------------------DVK----PANME 280 (515)
Q Consensus 237 v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~-------------------------------~~~----~~~~~ 280 (515)
|.+++|+|++++|+++ .|++|++||+++++....+. +.. ...+.
T Consensus 242 V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~ 321 (611)
T 1nr0_A 242 VFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRY 321 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEc
Confidence 9999999999999998 89999999998765332110 000 01346
Q ss_pred ccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccc---------------------------cceeeeccC--
Q 010206 281 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH---------------------------SKLFEEQEA-- 331 (515)
Q Consensus 281 ~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~---------------------------~~~~~~~~~-- 331 (515)
+|...|++++|+|++ ++|++++.|+.|++||+.++...... ++.++....
T Consensus 322 gh~~~v~~l~~spdg-~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~ 400 (611)
T 1nr0_A 322 GHNKAITALSSSADG-KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGV 400 (611)
T ss_dssp CCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSS
T ss_pred CCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccc
Confidence 799999999999999 89999999999999999876432110 000100000
Q ss_pred --------------------CCc-----------------cccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCC
Q 010206 332 --------------------PGT-----------------RSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMD 373 (515)
Q Consensus 332 --------------------~~~-----------------~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~ 373 (515)
+.. ......|...+.+++|+|+|++|++|+. ++|++||+..
T Consensus 401 ~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~- 479 (611)
T 1nr0_A 401 DSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG- 479 (611)
T ss_dssp CTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEET-
T ss_pred cccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccC-
Confidence 000 0000014456889999999999999875 9999999985
Q ss_pred CCC--eeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceee--eccCCCceeeEE
Q 010206 374 SGP--VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTT--LEASKNPMRRQV 449 (515)
Q Consensus 374 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~--~~~~~~~v~~~~ 449 (515)
... +.. ..|... |++++|+|||++|++++.|++|++|++.+....... +..|...|.+++
T Consensus 480 ~~~~~~~~-~~h~~~---------------v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~ 543 (611)
T 1nr0_A 480 ASVSEVKT-IVHPAE---------------ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVS 543 (611)
T ss_dssp TEEEEEEE-EECSSC---------------EEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEE
T ss_pred Cceeeeec-cCCCCc---------------eEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEE
Confidence 322 122 344433 569999999999999999999999999873333332 445999999999
Q ss_pred ECCCCCeeEeecCCCeEEEecCCCCCccccC-Cccccc-cCCeeEEEEcCCCCEEEEEcC-CcEEEEeC
Q 010206 450 QTPSRPSRPLGSLSGVVRRVKGADNSALDAN-GNAFDF-SMKLLHLAWHPSENSIACAAS-NSLYMYYA 515 (515)
Q Consensus 450 ~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~-~~~~~~-~~~i~~~~~s~~~~~la~~~~-~~~~i~~~ 515 (515)
|+|++++|++|+.|++|++++-.... ... ....+| ...|.+++|+|+++ |++++. ..+.+|+.
T Consensus 544 fspdg~~lasgs~D~~v~lW~~~~~~--~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 544 WSPDNVRLATGSLDNSVIVWNMNKPS--DHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTCTT--SCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred ECCCCCEEEEEECCCcEEEEECCCcc--cccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence 99999999999999999994322211 011 123357 78999999999998 776665 55999974
No 2
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.1e-49 Score=384.07 Aligned_cols=438 Identities=55% Similarity=0.918 Sum_probs=320.8
Q ss_pred ccccccchhhhhcccccccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccce
Q 010206 12 AQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR 91 (515)
Q Consensus 12 ~~~~~w~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (515)
..+.+|+|.|+|++. ..++.|.+.|++++|+|+|++||+|+.||.|+||++.+++... ....++++
T Consensus 7 ~~~~~w~~~q~~~~~--~~~~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~------------~~~~~~~~ 72 (447)
T 3dw8_B 7 GNDIQWCFSQVKGAV--DDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQ------------SHSRGEYN 72 (447)
T ss_dssp -CCCCCEEEECCSCS--SSCCCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----------------CCCCCCEE
T ss_pred CcceeEEEEEecccc--cccccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCC------------ccccccee
Confidence 467789999999974 3468899999999999999999999999999999998765310 01123556
Q ss_pred eeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCC
Q 010206 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (515)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (515)
....+.+|.++++++.++.+...|++++|+|..+..+|++++.|++|++||+.+++..... .....
T Consensus 73 ~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~-~~~~~------------- 138 (447)
T 3dw8_B 73 VYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEG-YNLKE------------- 138 (447)
T ss_dssp EEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEEC-CSCC--------------
T ss_pred EecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcce-ecccC-------------
Confidence 6788999999999999999999999999976543368999999999999999876543211 11000
Q ss_pred CcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEE
Q 010206 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 251 (515)
Q Consensus 172 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 251 (515)
.+|... .......+.+.. +...+......+.+.+..+|...|.+++|+|++++|++
T Consensus 139 ---------~~g~~~-------------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 194 (447)
T 3dw8_B 139 ---------EDGRYR-------------DPTTVTTLRVPV--FRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLS 194 (447)
T ss_dssp -----------------------------CCCCCSCCCCE--EEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEE
T ss_pred ---------cccccc-------------CcccccceEecc--ccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEE
Confidence 001000 000000001000 00011111123344445789999999999999999999
Q ss_pred eCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccC
Q 010206 252 ADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 331 (515)
Q Consensus 252 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 331 (515)
|.|+.|++||+++......++..++..+.+|...|.+++|+|+++.+|++|+.||.|++||+++++........+..+..
T Consensus 195 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 274 (447)
T 3dw8_B 195 ADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPED 274 (447)
T ss_dssp ECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC--
T ss_pred eCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCC
Confidence 99999999999866655555555666788899999999999997679999999999999999998765554566666655
Q ss_pred CCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCC
Q 010206 332 PGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 411 (515)
Q Consensus 332 ~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 411 (515)
+.....+.+|...|.+++|+|++++|++++++.|++||+++.++++..+..|......++..+..+++++++.++|+|++
T Consensus 275 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~ 354 (447)
T 3dw8_B 275 PSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSD 354 (447)
T ss_dssp ---CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTS
T ss_pred ccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCC
Confidence 55555667777899999999999999998779999999986578889999998776666667777777777789999999
Q ss_pred CEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCee
Q 010206 412 GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLL 491 (515)
Q Consensus 412 ~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~ 491 (515)
++|++|+.||.|++||+.+++. ..++.+..+.......+..+....+... ........+.+...|.
T Consensus 355 ~~l~s~s~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~i~ 420 (447)
T 3dw8_B 355 SVVMTGSYNNFFRMFDRNTKRD--ITLEASRENNKPRTVLKPRKVCASGKRK------------KDEISVDSLDFNKKIL 420 (447)
T ss_dssp SEEEEECSTTEEEEEETTTCCE--EEEECCSTTCCTTCBCCCCCEECSSCCC------------TTCEEGGGCCTTSCCC
T ss_pred CEEEEeccCCEEEEEEcCCCcc--eeeeecccccccccccCCccccccCCcc------------cccccccccccCCcee
Confidence 9999999999999999998733 3667776665544444433332222111 1112223445678999
Q ss_pred EEEEcCCCCEEEEEcCCcEEEEeC
Q 010206 492 HLAWHPSENSIACAASNSLYMYYA 515 (515)
Q Consensus 492 ~~~~s~~~~~la~~~~~~~~i~~~ 515 (515)
+++|+|++++||+++.+++++|++
T Consensus 421 ~~~~~p~~~~la~~~~~~~~~~~~ 444 (447)
T 3dw8_B 421 HTAWHPKENIIAVATTNNLYIFQD 444 (447)
T ss_dssp EEEECSSSSEEEEECSSCEEEEEC
T ss_pred EEEECCCCCEEEEEecceeeeecc
Confidence 999999999999999999999985
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=7.8e-48 Score=386.12 Aligned_cols=418 Identities=14% Similarity=0.145 Sum_probs=291.5
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
..+.+.+.+++|+|||++||+++ ++.|+||++.+++. ...+.+|.
T Consensus 15 ~~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~-----------------------~~~~~~h~----------- 59 (611)
T 1nr0_A 15 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTD-----------------------TEIYTEHS----------- 59 (611)
T ss_dssp CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSC-----------------------CEEECCCS-----------
T ss_pred CcccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCccc-----------------------CeEecCCC-----------
Confidence 35678889999999999999997 56999999876553 25678888
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
..|++++| ++++++|++++.|++|++||+.+++.........+ .+.|. .++|+|+|+.+.....
T Consensus 60 -~~v~~~~~--spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~------~~~v~-------~v~fs~dg~~l~~~~~ 123 (611)
T 1nr0_A 60 -HQTTVAKT--SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVF------SGPVK-------DISWDSESKRIAAVGE 123 (611)
T ss_dssp -SCEEEEEE--CTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECS------SSCEE-------EEEECTTSCEEEEEEC
T ss_pred -CceEEEEE--CCCCcEEEEEeCCCCEEEeECCCCcceeeEeeccc------CCceE-------EEEECCCCCEEEEEEC
Confidence 88999999 56788999999999999999975432221111111 12233 5566666554421100
Q ss_pred ----------------------c----------CCCC-CCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeE
Q 010206 192 ----------------------C----------ASND-SSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHIN 238 (515)
Q Consensus 192 ----------------------~----------~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~ 238 (515)
+ .... .+++++.|+.+++|| ... .++... +.+|...|.
T Consensus 124 ~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd--~~~------~~~~~~-l~~H~~~V~ 194 (611)
T 1nr0_A 124 GRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFE--GPP------FKFKST-FGEHTKFVH 194 (611)
T ss_dssp CSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEE--TTT------BEEEEE-ECCCSSCEE
T ss_pred CCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEE--CCC------CeEeee-eccccCceE
Confidence 0 0011 358899999999999 322 223333 478999999
Q ss_pred EEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCccc
Q 010206 239 SISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 317 (515)
Q Consensus 239 ~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~ 317 (515)
+++|+|++++|+++ .|++|++||+.+++....+.. ......+|.+.|.+++|+|++ .+|++++.|+.|++||+++++
T Consensus 195 ~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~-~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~ 272 (611)
T 1nr0_A 195 SVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFED-DSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLK 272 (611)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBC-TTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE
T ss_pred EEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecc-ccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCc
Confidence 99999999999998 899999999987654322100 001122799999999999999 899999999999999998876
Q ss_pred cccccc----------------------------ceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEE
Q 010206 318 LCDTHS----------------------------KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLW 368 (515)
Q Consensus 318 ~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iw 368 (515)
...... +.++.. .......+.+|...|.+++|+|+|++|++++. ++|++|
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~-~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~W 351 (611)
T 1nr0_A 273 VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE-LGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSW 351 (611)
T ss_dssp EEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT-TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCC-CCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEE
Confidence 432110 001100 00112345689999999999999999999875 999999
Q ss_pred EeeCCCCCeeeE-eeeccccccc-------------------------------------------cccccCC-------
Q 010206 369 DINMDSGPVATF-QVHEHLRPKL-------------------------------------------CDLYEND------- 397 (515)
Q Consensus 369 d~~~~~~~~~~~-~~~~~~~~~~-------------------------------------------~~~~~~~------- 397 (515)
|+.+ ++....+ ..|...+..+ ..+..++
T Consensus 352 d~~~-~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~ 430 (611)
T 1nr0_A 352 DIST-GISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC 430 (611)
T ss_dssp ETTT-CCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE
T ss_pred ECCC-CceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEe
Confidence 9875 3332221 1111000000 0000000
Q ss_pred ----------------CccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeec
Q 010206 398 ----------------SIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGS 461 (515)
Q Consensus 398 ----------------~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 461 (515)
.-..+.+++|+|||++|++|+.|++|++||+.++........+|...|.+++|+|++++|++++
T Consensus 431 ~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s 510 (611)
T 1nr0_A 431 YKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATD 510 (611)
T ss_dssp SSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred CceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEc
Confidence 0123568999999999999999999999999865322222368999999999999999999999
Q ss_pred CCCeEEEecCCCCCccccCCc-cc-cccCCeeEEEEcCCCCEEEEEcCCc-EEEEeC
Q 010206 462 LSGVVRRVKGADNSALDANGN-AF-DFSMKLLHLAWHPSENSIACAASNS-LYMYYA 515 (515)
Q Consensus 462 ~d~~v~l~~~~~~~~~~~~~~-~~-~~~~~i~~~~~s~~~~~la~~~~~~-~~i~~~ 515 (515)
.|++|++++..... +.... .. .|...|.+++|+||+++||+++.|+ +.+|+.
T Consensus 511 ~d~~v~~w~~~~~~--~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~ 565 (611)
T 1nr0_A 511 QSRKVIPYSVANNF--ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 565 (611)
T ss_dssp TTSCEEEEEGGGTT--EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CCCCEEEEEcCCCC--ceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEEC
Confidence 99999993322111 11111 22 3889999999999999999988655 899973
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=8.8e-46 Score=370.54 Aligned_cols=358 Identities=18% Similarity=0.293 Sum_probs=291.7
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|...|.+++|+|+|++|++++.|+.|++|+.... ....+.+|.
T Consensus 217 ~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~------------------------~~~~~~~~~---------- 262 (577)
T 2ymu_A 217 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ------------------------LLQTLTGHS---------- 262 (577)
T ss_dssp EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC------------------------EEEEECCCS----------
T ss_pred EecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCC------------------------EEEEEecCC----------
Confidence 4578999999999999999999999999999996422 334567787
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|++++| .+++..+++++.|+.|++|+..... ......+ .+.+. .++++|+++.+
T Consensus 263 --~~v~~v~~--~~d~~~l~~~~~d~~i~~w~~~~~~-~~~~~~h--------~~~v~-------~~~~~~~~~~l---- 318 (577)
T 2ymu_A 263 --SSVNGVAF--RPDGQTIASASDDKTVKLWNRNGQL-LQTLTGH--------SSSVW-------GVAFSPDGQTI---- 318 (577)
T ss_dssp --SCEEEEEE--CTTSSEEEEEETTSCEEEEETTSCE-EEEECCC--------SSCEE-------EEEECTTSSEE----
T ss_pred --CCEEEEEE--cCCCCEEEEEeCCCEEEEEeCCCcE-EEEEecC--------CCCeE-------EEEECCCCCEE----
Confidence 88999999 5567899999999999999976543 3332222 23344 78999999998
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
++++.++.+++|| .... .... +.+|...|.+++|+|+++.|+++ .|+.|++||.. .+..
T Consensus 319 --------~t~~~d~~i~~w~--~~~~-------~~~~-~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~- 378 (577)
T 2ymu_A 319 --------ASASDDKTVKLWN--RNGQ-------HLQT-LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLL- 378 (577)
T ss_dssp --------EEEETTSCEEEEE--TTSC-------EEEE-ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CCEE-
T ss_pred --------EEEeCCCeEEEEe--CCCC-------eeEE-EeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CCEE-
Confidence 9999999999999 3221 1122 46889999999999999999998 89999999964 3222
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
..+.+|...|.+++|+|++ ++|++++.|+.|++||.. ++.. . .+.+|...|.+++
T Consensus 379 -------~~~~~~~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~~-~~~~----~------------~~~~~~~~v~~~~ 433 (577)
T 2ymu_A 379 -------QTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRN-GQLL----Q------------TLTGHSSSVWGVA 433 (577)
T ss_dssp -------EEEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECTT-CCEE----E------------EEECCSSCEEEEE
T ss_pred -------EEecCCCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCC-CCEE----E------------EecCCCCCeEEEE
Confidence 1557799999999999999 899999999999999963 3221 1 1456778999999
Q ss_pred EccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEec
Q 010206 350 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 428 (515)
Q Consensus 350 ~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~ 428 (515)
|+|++++|++++. +.|++||.. ++.+..+.+|... |.+++|+|++++|++++.|+.|++||.
T Consensus 434 ~s~d~~~l~~~~~d~~v~~w~~~--~~~~~~~~~~~~~---------------v~~~~~spd~~~las~~~d~~i~iw~~ 496 (577)
T 2ymu_A 434 FSPDDQTIASASDDKTVKLWNRN--GQLLQTLTGHSSS---------------VRGVAFSPDGQTIASASDDKTVKLWNR 496 (577)
T ss_dssp ECTTSSEEEEEETTSEEEEEETT--SCEEEEEECCSSC---------------EEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred ECCCCCEEEEEcCCCEEEEEECC--CCEEEEEcCCCCC---------------EEEEEEcCCCCEEEEEeCCCEEEEEcC
Confidence 9999999999865 999999974 6777888777654 569999999999999999999999996
Q ss_pred CCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCC
Q 010206 429 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASN 508 (515)
Q Consensus 429 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~ 508 (515)
. + .....+.+|..+|++++|+|++++|++++.|+.|++++ ..+ +......+|...|++++|+||+++|++++.|
T Consensus 497 ~-~-~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd---~~~-~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D 570 (577)
T 2ymu_A 497 N-G-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN---RNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASSD 570 (577)
T ss_dssp T-S-CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC---TTS-CEEEEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred C-C-CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEe---CCC-CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence 4 3 56688999999999999999999999999999999943 221 2233445799999999999999999988865
Q ss_pred c-EEEEe
Q 010206 509 S-LYMYY 514 (515)
Q Consensus 509 ~-~~i~~ 514 (515)
+ +++|+
T Consensus 571 ~~i~~Wd 577 (577)
T 2ymu_A 571 KTVKLWN 577 (577)
T ss_dssp SCEEEEC
T ss_pred CEEEEeC
Confidence 5 88995
No 5
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.6e-45 Score=366.15 Aligned_cols=370 Identities=17% Similarity=0.271 Sum_probs=284.4
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.+.|+|++|||||++||+|+.|+.|+|||.. ++ .+..+.+|.
T Consensus 12 L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~-~~-----------------------~~~~l~gh~---------- 57 (577)
T 2ymu_A 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ-----------------------LLQTLTGHS---------- 57 (577)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SC-----------------------EEEEEECCS----------
T ss_pred ECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECC-CC-----------------------EEEEEeCCC----------
Confidence 45899999999999999999999999999999953 33 345688898
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc-
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN- 189 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~- 189 (515)
..|++++| ++++++|++++.|++|++||+... .......+. +.+. .++|+|+++.+...
T Consensus 58 --~~V~~l~f--spdg~~las~~~d~~i~vWd~~~~-~~~~~~~~~--------~~v~-------~~~~s~d~~~l~~~~ 117 (577)
T 2ymu_A 58 --SSVWGVAF--SPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHS--------SSVR-------GVAFSPDGQTIASAS 117 (577)
T ss_dssp --SCEEEEEE--CTTSSEEEEEETTSCEEEEETTSC-EEEEECCCS--------SCEE-------EEEECTTSSEEEEEE
T ss_pred --CCEEEEEE--CCCCCEEEEEeCCCEEEEEECCCC-EEEEEECCC--------CCEE-------EEEECCCCCEEEEEc
Confidence 88999999 557889999999999999997543 333322211 1121 33333333322110
Q ss_pred ---------------------------------------------------------------------cccCCCCCCCC
Q 010206 190 ---------------------------------------------------------------------FGCASNDSSFP 200 (515)
Q Consensus 190 ---------------------------------------------------------------------~~~~~~~~~~~ 200 (515)
.......++++
T Consensus 118 ~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 197 (577)
T 2ymu_A 118 DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIAS 197 (577)
T ss_dssp TTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred CCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEE
Confidence 00011234577
Q ss_pred CCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccc
Q 010206 201 PGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANM 279 (515)
Q Consensus 201 ~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 279 (515)
++.++.+++|| .. . +.... +.+|...|.+++|+|++++|+++ .|+.|++||... +.. ..+
T Consensus 198 ~~~d~~v~~w~--~~---~----~~~~~-~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~-~~~--------~~~ 258 (577)
T 2ymu_A 198 ASDDKTVKLWN--RN---G----QLLQT-LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLL--------QTL 258 (577)
T ss_dssp EETTSEEEEEC--TT---S----CEEEE-EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS-CEE--------EEE
T ss_pred EcCCCEEEEEe--CC---C----cEEEE-EecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC-CEE--------EEE
Confidence 88888888888 21 1 12222 46899999999999999999998 899999999753 222 155
Q ss_pred cccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEE
Q 010206 280 EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 359 (515)
Q Consensus 280 ~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 359 (515)
.+|...|.+++|+|++ ..|++++.|+.|++||.... .. ..+.+|...|.+++|+|++++|++
T Consensus 259 ~~~~~~v~~v~~~~d~-~~l~~~~~d~~i~~w~~~~~-~~----------------~~~~~h~~~v~~~~~~~~~~~l~t 320 (577)
T 2ymu_A 259 TGHSSSVNGVAFRPDG-QTIASASDDKTVKLWNRNGQ-LL----------------QTLTGHSSSVWGVAFSPDGQTIAS 320 (577)
T ss_dssp CCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSC-EE----------------EEECCCSSCEEEEEECTTSSEEEE
T ss_pred ecCCCCEEEEEEcCCC-CEEEEEeCCCEEEEEeCCCc-EE----------------EEEecCCCCeEEEEECCCCCEEEE
Confidence 7799999999999998 89999999999999996432 21 124567789999999999999999
Q ss_pred EcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeee
Q 010206 360 RDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL 438 (515)
Q Consensus 360 ~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~ 438 (515)
++. +.|++||+. ...+..+..|... +.+++|+|++++|++++.|+.|++|+.. + .....+
T Consensus 321 ~~~d~~i~~w~~~--~~~~~~~~~~~~~---------------v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~-~~~~~~ 381 (577)
T 2ymu_A 321 ASDDKTVKLWNRN--GQHLQTLTGHSSS---------------VWGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQTL 381 (577)
T ss_dssp EETTSCEEEEETT--SCEEEEECCCSSC---------------EEEEEECTTSSEEEEEETTSEEEEEETT-C-CEEEEE
T ss_pred EeCCCeEEEEeCC--CCeeEEEeCCCCC---------------EEEEEECCCCCEEEEEeCCCEEEEEcCC-C-CEEEEe
Confidence 875 999999976 5566666666544 5589999999999999999999999965 3 566788
Q ss_pred ccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCc-EEEEe
Q 010206 439 EASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS-LYMYY 514 (515)
Q Consensus 439 ~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~-~~i~~ 514 (515)
.+|..++.+++++|++++|++++.|+.|++++. . .+......+|...|++++|+||+++|++++.++ +.+|+
T Consensus 382 ~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~---~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~ 454 (577)
T 2ymu_A 382 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR---N-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN 454 (577)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSEEEEECT---T-CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC---C-CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 999999999999999999999999999999432 1 122223446889999999999999999888665 78886
No 6
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.7e-44 Score=327.15 Aligned_cols=283 Identities=14% Similarity=0.218 Sum_probs=240.4
Q ss_pred ccccccceEEEEECCC----CCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccc
Q 010206 31 EVQEVDIISAIEFDKS----GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~----g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 106 (515)
..+|.+.|.+++|+|+ +++|++|+.|+.|+||++.+++.. ....+.+|.
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~---------------------~~~~l~gh~------ 80 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD---------------------LQWSLEGHQ------ 80 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE---------------------EEEEECCCS------
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee---------------------eeeeeccCC------
Confidence 3589999999999985 679999999999999998765421 334578888
Q ss_pred ccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcc
Q 010206 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (515)
Q Consensus 107 ~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l 186 (515)
..|.+++|+ +++.++++++.|++|++||+.+++....
T Consensus 81 ------~~v~~~~~~--~~~~~l~s~s~D~~i~lWd~~~~~~~~~----------------------------------- 117 (321)
T 3ow8_A 81 ------LGVVSVDIS--HTLPIAASSSLDAHIRLWDLENGKQIKS----------------------------------- 117 (321)
T ss_dssp ------SCEEEEEEC--SSSSEEEEEETTSEEEEEETTTTEEEEE-----------------------------------
T ss_pred ------CCEEEEEEC--CCCCEEEEEeCCCcEEEEECCCCCEEEE-----------------------------------
Confidence 889999995 5567999999999999999988764332
Q ss_pred ccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCC
Q 010206 187 ERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS 265 (515)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~ 265 (515)
+..|...+.+++|+|++++|+++ .|+.|++||+++.
T Consensus 118 -------------------------------------------~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~ 154 (321)
T 3ow8_A 118 -------------------------------------------IDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG 154 (321)
T ss_dssp -------------------------------------------EECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC
T ss_pred -------------------------------------------EeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC
Confidence 12445667789999999999999 8999999999877
Q ss_pred CcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccce
Q 010206 266 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 345 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 345 (515)
+... .+..|...|.+++|+|++ ++|++|+.|+.|++||+++++... .+.+|..+|
T Consensus 155 ~~~~--------~~~~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~~~~----------------~~~~h~~~v 209 (321)
T 3ow8_A 155 KKEY--------SLDTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGKLLH----------------TLEGHAMPI 209 (321)
T ss_dssp SEEE--------EEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEE----------------EECCCSSCC
T ss_pred ceeE--------EecCCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEEE----------------EEcccCCce
Confidence 6543 445678889999999999 899999999999999999876532 145677899
Q ss_pred eEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEE
Q 010206 346 SDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 424 (515)
Q Consensus 346 ~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~ 424 (515)
.+++|+|++++|++|+. +.|++||++. .+....+.+|... |.+++|+|++++|++++.|++|+
T Consensus 210 ~~l~~spd~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~---------------v~~~~~sp~~~~l~s~s~D~~v~ 273 (321)
T 3ow8_A 210 RSLTFSPDSQLLVTASDDGYIKIYDVQH-ANLAGTLSGHASW---------------VLNVAFCPDDTHFVSSSSDKSVK 273 (321)
T ss_dssp CEEEECTTSCEEEEECTTSCEEEEETTT-CCEEEEECCCSSC---------------EEEEEECTTSSEEEEEETTSCEE
T ss_pred eEEEEcCCCCEEEEEcCCCeEEEEECCC-cceeEEEcCCCCc---------------eEEEEECCCCCEEEEEeCCCcEE
Confidence 99999999999999876 9999999986 7778888877755 56999999999999999999999
Q ss_pred EEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 425 VFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 425 iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+||+.++ ..+.++.+|...|.+++|+|+++.|++++.|+.|++
T Consensus 274 iwd~~~~-~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~v 316 (321)
T 3ow8_A 274 VWDVGTR-TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHI 316 (321)
T ss_dssp EEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred EEeCCCC-EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence 9999987 455788999999999999999999999999999999
No 7
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=8.4e-44 Score=339.17 Aligned_cols=281 Identities=17% Similarity=0.249 Sum_probs=245.0
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.++|++++|+|++++|++|+.||.|+|||+.+++. ...+.+|.
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~-----------------------~~~l~~h~---------- 150 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF-----------------------ERTLKGHT---------- 150 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC-----------------------CEEECCCS----------
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-----------------------EEEEeccC----------
Confidence 458999999999999999999999999999999987763 35678888
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|++++|+ +++.+|++|+.|++|++||+.+++....
T Consensus 151 --~~V~~v~~~--~~~~~l~sgs~D~~i~iwd~~~~~~~~~--------------------------------------- 187 (410)
T 1vyh_C 151 --DSVQDISFD--HSGKLLASCSADMTIKLWDFQGFECIRT--------------------------------------- 187 (410)
T ss_dssp --SCEEEEEEC--TTSSEEEEEETTSCCCEEETTSSCEEEC---------------------------------------
T ss_pred --CcEEEEEEc--CCCCEEEEEeCCCeEEEEeCCCCceeEE---------------------------------------
Confidence 889999995 5677999999999999999876542211
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
+.+|...|.+++|+|++++|++| .|++|++||++++....
T Consensus 188 ---------------------------------------~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~ 228 (410)
T 1vyh_C 188 ---------------------------------------MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK 228 (410)
T ss_dssp ---------------------------------------CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred ---------------------------------------EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 35788899999999999999998 89999999998776442
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
.+.+|...|.++.|+|++ .+|++|+.|+.|++||++++.... .+.+|...|.+++
T Consensus 229 --------~~~~h~~~v~~~~~~~~g-~~l~s~s~D~~v~vwd~~~~~~~~----------------~~~~h~~~v~~~~ 283 (410)
T 1vyh_C 229 --------TFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKA----------------ELREHRHVVECIS 283 (410)
T ss_dssp --------EEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEE----------------EECCCSSCEEEEE
T ss_pred --------EEeCCCccEEEEEECCCC-CEEEEEcCCCeEEEEECCCCceee----------------EecCCCceEEEEE
Confidence 567899999999999998 899999999999999998875421 2456778999999
Q ss_pred EccC--------------------CCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEc
Q 010206 350 FARN--------------------GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 408 (515)
Q Consensus 350 ~s~~--------------------~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 408 (515)
|+|+ +.+|++|+. +.|++||+++ +.++..+.+|... |.+++|+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~-~~~~~~~~~h~~~---------------v~~v~~~ 347 (410)
T 1vyh_C 284 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDNW---------------VRGVLFH 347 (410)
T ss_dssp ECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT-TEEEEEEECCSSC---------------EEEEEEC
T ss_pred EcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC-CceEEEEECCCCc---------------EEEEEEc
Confidence 9996 678999875 9999999986 7888888888765 5599999
Q ss_pred CCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 409 GDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 409 ~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
|++++|++|+.||.|++||+.++ .....+.+|...|.+++|+|++++|++|+.|++|++
T Consensus 348 ~~g~~l~s~s~D~~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~v 406 (410)
T 1vyh_C 348 SGGKFILSCADDKTLRVWDYKNK-RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 406 (410)
T ss_dssp SSSSCEEEEETTTEEEEECCTTS-CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCC-ceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Confidence 99999999999999999999877 455789999999999999999999999999999999
No 8
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1e-42 Score=318.13 Aligned_cols=284 Identities=17% Similarity=0.202 Sum_probs=238.0
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.+.|++++|+|+|++|++|+.||.|+|||+.+++. ...+..|.
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~-----------------------~~~~~~~~---------- 55 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE-----------------------VRSIQVTE---------- 55 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-----------------------EEEEECCS----------
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce-----------------------eEEeeccC----------
Confidence 458999999999999999999999999999999987653 35567777
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|.+++|+| ++++|++++.|++|++||+.+++....
T Consensus 56 --~~v~~~~~~~--~~~~l~s~s~d~~i~vwd~~~~~~~~~--------------------------------------- 92 (304)
T 2ynn_A 56 --TPVRAGKFIA--RKNWIIVGSDDFRIRVFNYNTGEKVVD--------------------------------------- 92 (304)
T ss_dssp --SCEEEEEEEG--GGTEEEEEETTSEEEEEETTTCCEEEE---------------------------------------
T ss_pred --CcEEEEEEeC--CCCEEEEECCCCEEEEEECCCCcEEEE---------------------------------------
Confidence 7899999965 567999999999999999987653221
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
+.+|...|.+++|+|++++|++| .|++|++||+++.....
T Consensus 93 ---------------------------------------~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~ 133 (304)
T 2ynn_A 93 ---------------------------------------FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE 133 (304)
T ss_dssp ---------------------------------------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEE
T ss_pred ---------------------------------------EeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchh
Confidence 35788999999999999999998 89999999998664432
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
. .+.+|...|.+++|+|+++.+|++|+.|+.|++||+++..... .+ ..+|...+..+.
T Consensus 134 ~-------~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~----~~-----------~~~~~~~v~~~~ 191 (304)
T 2ynn_A 134 Q-------TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF----TL-----------TTGQERGVNYVD 191 (304)
T ss_dssp E-------EECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSE----EE-----------ECCCTTCEEEEE
T ss_pred h-------hhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccc----ee-----------ccCCcCcEEEEE
Confidence 2 5678999999999999544899999999999999997764321 11 233446789999
Q ss_pred Ecc--CCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEE
Q 010206 350 FAR--NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 426 (515)
Q Consensus 350 ~s~--~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw 426 (515)
|+| ++++|++|+. ++|++||+++ ++++.++.+|... |..++|+|++++|++|+.||.|++|
T Consensus 192 ~~~~~~~~~l~s~s~D~~i~iWd~~~-~~~~~~~~~h~~~---------------v~~~~~~p~~~~l~s~s~Dg~i~iW 255 (304)
T 2ynn_A 192 YYPLPDKPYMITASDDLTIKIWDYQT-KSCVATLEGHMSN---------------VSFAVFHPTLPIIISGSEDGTLKIW 255 (304)
T ss_dssp ECCSTTCCEEEEEETTSEEEEEETTT-TEEEEEEECCSSC---------------EEEEEECSSSSEEEEEETTSCEEEE
T ss_pred EEEcCCCCEEEEEcCCCeEEEEeCCC-CccceeeCCCCCC---------------EEEEEECCCCCEEEEEcCCCeEEEE
Confidence 987 7789999875 9999999996 7888889888765 5589999999999999999999999
Q ss_pred ecCCCCcceeeeccCCCceeeEEECCCCC--eeEeecCCCeEEE
Q 010206 427 GCSEGSAESTTLEASKNPMRRQVQTPSRP--SRPLGSLSGVVRR 468 (515)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~v~l 468 (515)
|+.++ .....+..|...+.+++++|++. ++++|+.||.+.+
T Consensus 256 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~ 298 (304)
T 2ynn_A 256 NSSTY-KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL 298 (304)
T ss_dssp ETTTC-CEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEE
T ss_pred ECCCC-ceeeeccCCCccEEEEEECCCCCceEEEEecCCceEEE
Confidence 99987 55688999999999999999875 5888888887766
No 9
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=7.4e-43 Score=324.37 Aligned_cols=287 Identities=14% Similarity=0.200 Sum_probs=236.9
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
...+|.++|++++|+||+++|++|+.||.|+|||..+++. ...+..|.
T Consensus 50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~-----------------------~~~~~~~~--------- 97 (340)
T 1got_B 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK-----------------------VHAIPLRS--------- 97 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE-----------------------EEEEECSS---------
T ss_pred eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc-----------------------ceEeecCC---------
Confidence 3458999999999999999999999999999999876653 34556676
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..|.+++|+ +++.+|++++.|+.|++|++.+.+....
T Consensus 98 ---~~v~~~~~s--~~~~~l~s~~~d~~v~iw~~~~~~~~~~-------------------------------------- 134 (340)
T 1got_B 98 ---SWVMTCAYA--PSGNYVACGGLDNICSIYNLKTREGNVR-------------------------------------- 134 (340)
T ss_dssp ---SCEEEEEEC--TTSSEEEEEETTCEEEEEETTTCSBSCE--------------------------------------
T ss_pred ---ccEEEEEEC--CCCCEEEEEeCCCeEEEEECccCCCcce--------------------------------------
Confidence 779999995 5677999999999999999876431000
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
.. ..+.+|...|.++.|++++. ++++ .|++|++||+++++..
T Consensus 135 -----------------------------------~~-~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~ 177 (340)
T 1got_B 135 -----------------------------------VS-RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQT 177 (340)
T ss_dssp -----------------------------------EE-EEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEE
T ss_pred -----------------------------------eE-EEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEE
Confidence 00 01357889999999999886 5555 8999999999876544
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
. .+.+|...|.+++|+|++ .+|++|+.|+.|++||++++.... .+.+|...|.++
T Consensus 178 ~--------~~~~h~~~v~~~~~~~~~-~~l~sg~~d~~v~~wd~~~~~~~~----------------~~~~h~~~v~~v 232 (340)
T 1got_B 178 T--------TFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCRQ----------------TFTGHESDINAI 232 (340)
T ss_dssp E--------EECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSEEE----------------EECCCSSCEEEE
T ss_pred E--------EEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCCeeEE----------------EEcCCcCCEEEE
Confidence 2 567899999999999998 899999999999999998875421 256677899999
Q ss_pred EEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 349 KFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 349 ~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
+|+|++++|++|+. +.|++||++. .+.+..+..+. ....|.+++|+|+|++|++|+.||.|++||
T Consensus 233 ~~~p~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~~~~-------------~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd 298 (340)
T 1got_B 233 CFFPNGNAFATGSDDATCRLFDLRA-DQELMTYSHDN-------------IICGITSVSFSKSGRLLLAGYDDFNCNVWD 298 (340)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCTT-------------CCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEcCCCCEEEEEcCCCcEEEEECCC-CcEEEEEccCC-------------cccceEEEEECCCCCEEEEECCCCeEEEEE
Confidence 99999999999875 9999999986 55554443211 112366999999999999999999999999
Q ss_pred cCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 428 CSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+.++ .....+.+|..+|.+++++|++++|++|+.|+.|++
T Consensus 299 ~~~~-~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~i 338 (340)
T 1got_B 299 ALKA-DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338 (340)
T ss_dssp TTTC-CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred cccC-cEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEe
Confidence 9877 455789999999999999999999999999999998
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-43 Score=363.18 Aligned_cols=404 Identities=12% Similarity=0.093 Sum_probs=279.5
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.+.|++++|+|+|++||+|+.||.|+||+..+.+.. .. ..|.
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~-----------------------~~-~~~~---------- 58 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVV-----------------------IK-LEDR---------- 58 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEE-----------------------EE-CSSC----------
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEE-----------------------EE-cCCC----------
Confidence 4589999999999999999999999999999997654321 11 2244
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|.+++|+| +++|++++.|++|++||+.+++........ +.+. +++|+|+++.+
T Consensus 59 --~~V~~l~fsp---g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~---------~~V~-------~v~~sp~g~~l---- 113 (902)
T 2oaj_A 59 --SAIKEMRFVK---GIYLVVINAKDTVYVLSLYSQKVLTTVFVP---------GKIT-------SIDTDASLDWM---- 113 (902)
T ss_dssp --CCEEEEEEET---TTEEEEEETTCEEEEEETTTCSEEEEEECS---------SCEE-------EEECCTTCSEE----
T ss_pred --CCEEEEEEcC---CCEEEEEECcCeEEEEECCCCcEEEEEcCC---------CCEE-------EEEECCCCCEE----
Confidence 7799999976 559999999999999999998766554321 3344 88999999999
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccce--ee---eeeccCcCCeEEEEecCC-CCEEEEe-CCCcEEEEeCC
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGC--RR---IYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLE 263 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~---~~~~~~~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~ 263 (515)
++++.+|.|++|| +....... ... .. ....+|...|.+++|+|+ +..|++| .|+.| +||++
T Consensus 114 --------~sgs~dg~V~lwd--~~~~~~~~-~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~ 181 (902)
T 2oaj_A 114 --------LIGLQNGSMIVYD--IDRDQLSS-FKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLV 181 (902)
T ss_dssp --------EEEETTSCEEEEE--TTTTEEEE-EEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETT
T ss_pred --------EEEcCCCcEEEEE--CCCCcccc-ceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECC
Confidence 9999999999999 44322110 000 00 123679999999999996 4678888 89999 99998
Q ss_pred CCCcccceecc-c---C------ccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCccccccc------------
Q 010206 264 ISNQSFNIVDV-K---P------ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT------------ 321 (515)
Q Consensus 264 ~~~~~~~~~~~-~---~------~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~------------ 321 (515)
+.+....+... . + .....|...|.+++|+|++ .+|++|+.||.|++||+++++.+..
T Consensus 182 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~ 260 (902)
T 2oaj_A 182 ENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQ 260 (902)
T ss_dssp TTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCC
T ss_pred CCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCC
Confidence 76543221100 0 0 0123456889999999998 8999999999999999977653210
Q ss_pred ----------c--cc-------------------------------eee-ec----------------------------
Q 010206 322 ----------H--SK-------------------------------LFE-EQ---------------------------- 329 (515)
Q Consensus 322 ----------~--~~-------------------------------~~~-~~---------------------------- 329 (515)
. +. .+. .+
T Consensus 261 ~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 340 (902)
T 2oaj_A 261 PDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP 340 (902)
T ss_dssp TTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS
T ss_pred CcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecC
Confidence 0 00 000 00
Q ss_pred -c------------CC-----------------Ccc------------------ccccccccceeE--------------
Q 010206 330 -E------------AP-----------------GTR------------------SFFTEIIASISD-------------- 347 (515)
Q Consensus 330 -~------------~~-----------------~~~------------------~~~~~~~~~i~~-------------- 347 (515)
. .+ ... ..+..|...|++
T Consensus 341 ~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~ 420 (902)
T 2oaj_A 341 TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGA 420 (902)
T ss_dssp SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHH
T ss_pred CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHH
Confidence 0 00 000 000111123333
Q ss_pred --------------------EEEccCCCEEEEEcC-CeEEEEEeeCCCCCe--eeEeeeccccccccccccCCCccceee
Q 010206 348 --------------------IKFARNGRHILSRDY-MTLKLWDINMDSGPV--ATFQVHEHLRPKLCDLYENDSIFDKFE 404 (515)
Q Consensus 348 --------------------~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~ 404 (515)
++|+|++++|++|+. ++|++||+.. +... ..+..... .......-..|++
T Consensus 421 ~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~-g~~~~~~~~~~~l~------~~~~~~h~~~V~s 493 (902)
T 2oaj_A 421 LSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASH-GDIQDNASFEVNLS------RTLNKAKELAVDK 493 (902)
T ss_dssp HHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSC-CTTTTTBCEEEEHH------HHTTCSSSCCEEE
T ss_pred HhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCC-ccccCCceEEeech------hhcCCCCCCceeE
Confidence 445688999999875 9999999986 3321 11211000 0000011123679
Q ss_pred EEEcCCCCEEEEecCCCcEEEEecCCCCc--------------------------------------------ceeeecc
Q 010206 405 CCLSGDGGRVATGSYSNLFRVFGCSEGSA--------------------------------------------ESTTLEA 440 (515)
Q Consensus 405 ~~~s~~~~~l~s~s~dg~i~iw~~~~~~~--------------------------------------------~~~~~~~ 440 (515)
++|+|||++||+|+.||+|++|++.+++. ...++.+
T Consensus 494 vafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 573 (902)
T 2oaj_A 494 ISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA 573 (902)
T ss_dssp EEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC
T ss_pred EEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEc
Confidence 99999999999999999999999986521 2467788
Q ss_pred CCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccc--cCCccc-cccCCeeEEEEc-----CCC---CEEEEEcCCc
Q 010206 441 SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALD--ANGNAF-DFSMKLLHLAWH-----PSE---NSIACAASNS 509 (515)
Q Consensus 441 ~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~--~~~~~~-~~~~~i~~~~~s-----~~~---~~la~~~~~~ 509 (515)
|..+|++++|+|+| +||+|+.|++|++++.....-.. ...... +|...|++++|+ ||| ++|++++.|+
T Consensus 574 h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~ 652 (902)
T 2oaj_A 574 NKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMG 652 (902)
T ss_dssp CSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTS
T ss_pred CCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCC
Confidence 99999999999999 99999999999994432211000 001222 688899999999 886 8999888665
Q ss_pred -EEEEe
Q 010206 510 -LYMYY 514 (515)
Q Consensus 510 -~~i~~ 514 (515)
+.+|+
T Consensus 653 tv~~wd 658 (902)
T 2oaj_A 653 EVITYK 658 (902)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 88886
No 11
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.1e-42 Score=321.94 Aligned_cols=295 Identities=15% Similarity=0.139 Sum_probs=225.9
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
..|...|.+++|+|||++|++++ |+++++||........... .|...... ....+
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~------------~~~~~~~~------------~~~~~ 81 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCA------------APNEGFCS------------AGVQT 81 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGG------------TTCGGGCS------------EEEEE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccc------------cCCcceee------------eeecc
Confidence 45778899999999999999887 6678888743211000000 00000001 11122
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
+..|++++|+| + ..|++++.||+|++||+.+++......
T Consensus 82 ~~~v~~~~~s~--d-~~l~~~s~dg~v~lWd~~~~~~~~~~~-------------------------------------- 120 (344)
T 4gqb_B 82 EAGVADLTWVG--E-RGILVASDSGAVELWELDENETLIVSK-------------------------------------- 120 (344)
T ss_dssp SSCEEEEEEET--T-TEEEEEETTSEEEEEEECTTSSCEEEE--------------------------------------
T ss_pred CCCEEEEEEeC--C-CeEEEEECCCEEEEEeccCCCceeEee--------------------------------------
Confidence 37799999965 3 479999999999999998875322211
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccc
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 270 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 270 (515)
....+|...|++++|+|++++|++| .|++|++||+++++...
T Consensus 121 ------------------------------------~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~- 163 (344)
T 4gqb_B 121 ------------------------------------FCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLS- 163 (344)
T ss_dssp ------------------------------------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-
T ss_pred ------------------------------------ccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE-
Confidence 0135899999999999999999998 89999999998776442
Q ss_pred eecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEE
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 350 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (515)
.+.+|...|++++|+|++..+|++++.|+.|++||+++++.... +. ...|...+.+++|
T Consensus 164 -------~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~----~~----------~~~~~~~~~~~~~ 222 (344)
T 4gqb_B 164 -------SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ----IG----------CSAPGYLPTSLAW 222 (344)
T ss_dssp -------EECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE----CC--------------CCCEEEEEE
T ss_pred -------EEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeee----ee----------cceeeccceeeee
Confidence 56789999999999999867899999999999999998764321 11 1233456899999
Q ss_pred cc-CCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCC-CEEEEecCCCcEEEEe
Q 010206 351 AR-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFG 427 (515)
Q Consensus 351 s~-~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~s~dg~i~iw~ 427 (515)
+| ++++|++|+. +.|++||+++ ++++.++.+|... |++++|+|++ ++|++|+.|++|++||
T Consensus 223 ~p~~~~~l~sg~~dg~v~~wd~~~-~~~~~~~~~h~~~---------------v~~v~fsp~g~~~lasgs~D~~i~vwd 286 (344)
T 4gqb_B 223 HPQQSEVFVFGDENGTVSLVDTKS-TSCVLSSAVHSQC---------------VTGLVFSPHSVPFLASLSEDCSLAVLD 286 (344)
T ss_dssp CSSCTTEEEEEETTSEEEEEESCC---CCEEEECCSSC---------------EEEEEECSSSSCCEEEEETTSCEEEEC
T ss_pred cCCCCcceEEeccCCcEEEEECCC-CcEEEEEcCCCCC---------------EEEEEEccCCCeEEEEEeCCCeEEEEE
Confidence 99 4667888765 9999999997 8889999988765 5699999998 5799999999999999
Q ss_pred cCCCCcceeeeccCCCceeeEEECCCCCe-eEeecCCCeEEE
Q 010206 428 CSEGSAESTTLEASKNPMRRQVQTPSRPS-RPLGSLSGVVRR 468 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~d~~v~l 468 (515)
+.++ . ...+.+|...|++++|+|+++. |++++.|++|++
T Consensus 287 ~~~~-~-~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~ 326 (344)
T 4gqb_B 287 SSLS-E-LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVH 326 (344)
T ss_dssp TTCC-E-EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred CCCC-c-EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEE
Confidence 9876 3 3567899999999999999875 679999999999
No 12
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.3e-42 Score=324.30 Aligned_cols=289 Identities=16% Similarity=0.183 Sum_probs=225.5
Q ss_pred cccccceEEEEECCCCCeEEeecC------CCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDR------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY 105 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 105 (515)
..|.+.|++++|||||++||+|+. |+.|++|+..++... ..+.....+|.
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~-------------------~~~~~~~~~~~----- 94 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN-------------------ESLCTAGVQTE----- 94 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C-------------------GGGCSEEEECS-----
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc-------------------eeEecccCCCC-----
Confidence 469999999999999999999987 788999987765432 11222334455
Q ss_pred cccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCc
Q 010206 106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (515)
Q Consensus 106 ~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 185 (515)
..|++++|+| ++ .+++++.||+|++||+.+++......
T Consensus 95 -------~~V~~~~~s~--d~-~~l~~s~dg~v~lWd~~~~~~~~~~~-------------------------------- 132 (357)
T 4g56_B 95 -------AGVTDVAWVS--EK-GILVASDSGAVELWEILEKESLLVNK-------------------------------- 132 (357)
T ss_dssp -------SCEEEEEEET--TT-EEEEEETTSCEEEC--------CCCC--------------------------------
T ss_pred -------CCEEEEEEcC--CC-CEEEEECCCEEEEeeccccceeEEEe--------------------------------
Confidence 7899999965 44 57788999999999998765221100
Q ss_pred cccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCC
Q 010206 186 GERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI 264 (515)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~ 264 (515)
....+|...|.+++|+|++++|+++ .|+.|++||+++
T Consensus 133 ------------------------------------------~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~ 170 (357)
T 4g56_B 133 ------------------------------------------FAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ 170 (357)
T ss_dssp ------------------------------------------EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred ------------------------------------------eccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 0025788999999999999999998 899999999987
Q ss_pred CCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccc
Q 010206 265 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 344 (515)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (515)
++... .+.+|...|++++|+|++..++++++.|+.|++||+++++.... + .+..|...
T Consensus 171 ~~~~~--------~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~----~----------~~~~~~~~ 228 (357)
T 4g56_B 171 KAVLK--------SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR----I----------DFCASDTI 228 (357)
T ss_dssp TEEEE--------EECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB----C----------CCTTCCSC
T ss_pred CcEEE--------EEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee----e----------eecccccc
Confidence 65442 56789999999999999856899999999999999988764321 1 12345578
Q ss_pred eeEEEEccC-CCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCC-CEEEEecCCC
Q 010206 345 ISDIKFARN-GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSN 421 (515)
Q Consensus 345 i~~~~~s~~-~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~s~dg 421 (515)
+.+++|+|+ +.+|++|+. +.|++||+++ ++++..+.+|... |++++|+|++ ++|++|+.|+
T Consensus 229 v~~v~~sp~~~~~la~g~~d~~i~~wd~~~-~~~~~~~~~~~~~---------------v~~l~~sp~~~~~lasgs~D~ 292 (357)
T 4g56_B 229 PTSVTWHPEKDDTFACGDETGNVSLVNIKN-PDSAQTSAVHSQN---------------ITGLAYSYHSSPFLASISEDC 292 (357)
T ss_dssp EEEEEECTTSTTEEEEEESSSCEEEEESSC-GGGCEEECCCSSC---------------EEEEEECSSSSCCEEEEETTS
T ss_pred ccchhhhhcccceEEEeecccceeEEECCC-CcEeEEEecccee---------------EEEEEEcCCCCCEEEEEeCCC
Confidence 999999997 567888765 9999999986 7888888877755 5699999987 5799999999
Q ss_pred cEEEEecCCCCcceeeeccCCCceeeEEECC-CCCeeEeecCCCeEEE
Q 010206 422 LFRVFGCSEGSAESTTLEASKNPMRRQVQTP-SRPSRPLGSLSGVVRR 468 (515)
Q Consensus 422 ~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~l 468 (515)
+|+|||++++ +.. ...+|..+|++++|+| ++++|++++.||+|++
T Consensus 293 ~i~iwd~~~~-~~~-~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~i 338 (357)
T 4g56_B 293 TVAVLDADFS-EVF-RDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLH 338 (357)
T ss_dssp CEEEECTTSC-EEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred EEEEEECCCC-cEe-EECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEE
Confidence 9999999977 333 4458999999999998 7899999999999999
No 13
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1e-41 Score=313.29 Aligned_cols=291 Identities=16% Similarity=0.202 Sum_probs=237.4
Q ss_pred eeeecccCCCcccccccccccceeEEEEEeec--CCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccC
Q 010206 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQS--ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (515)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 169 (515)
+...+.+|. +.|.+++|+|. .++.+|++|+.|++|++|++..++....
T Consensus 24 ~~~~~~~H~------------~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~------------------ 73 (321)
T 3ow8_A 24 LFKQEQAHD------------DAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQ------------------ 73 (321)
T ss_dssp EEEETTSSS------------SCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEE------------------
T ss_pred eeeecccCC------------CcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeee------------------
Confidence 334567787 89999999764 3467999999999999999876542111
Q ss_pred CCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEE
Q 010206 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF 249 (515)
Q Consensus 170 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 249 (515)
|. +.+|...|.+++|++++.++
T Consensus 74 ----------------------------------------~~------------------l~gh~~~v~~~~~~~~~~~l 95 (321)
T 3ow8_A 74 ----------------------------------------WS------------------LEGHQLGVVSVDISHTLPIA 95 (321)
T ss_dssp ----------------------------------------EE------------------ECCCSSCEEEEEECSSSSEE
T ss_pred ----------------------------------------ee------------------eccCCCCEEEEEECCCCCEE
Confidence 00 46889999999999999999
Q ss_pred EEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeee
Q 010206 250 ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 328 (515)
Q Consensus 250 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 328 (515)
+++ .|++|++||+++++... .+..|...+.+++|+|++ ++|++|+.|+.|++||+++++... .
T Consensus 96 ~s~s~D~~i~lWd~~~~~~~~--------~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~~----~--- 159 (321)
T 3ow8_A 96 ASSSLDAHIRLWDLENGKQIK--------SIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKEY----S--- 159 (321)
T ss_dssp EEEETTSEEEEEETTTTEEEE--------EEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEEE----E---
T ss_pred EEEeCCCcEEEEECCCCCEEE--------EEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCceeE----E---
Confidence 998 89999999998776443 445677889999999999 899999999999999998875421 1
Q ss_pred ccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEE
Q 010206 329 QEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 407 (515)
Q Consensus 329 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 407 (515)
+..|...|.+++|+|++++|++|+. +.|++||+++ ++++..+.+|... |.+++|
T Consensus 160 ---------~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~-~~~~~~~~~h~~~---------------v~~l~~ 214 (321)
T 3ow8_A 160 ---------LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT-GKLLHTLEGHAMP---------------IRSLTF 214 (321)
T ss_dssp ---------EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSC---------------CCEEEE
T ss_pred ---------ecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCC-CcEEEEEcccCCc---------------eeEEEE
Confidence 3345578999999999999999875 9999999986 7788888877654 459999
Q ss_pred cCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCcccccc
Q 010206 408 SGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFS 487 (515)
Q Consensus 408 s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~ 487 (515)
+|++++|++|+.|+.|++||++++ .....+.+|...|.+++|+|++++|++++.|++|++++ ....+......+|.
T Consensus 215 spd~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd---~~~~~~~~~~~~h~ 290 (321)
T 3ow8_A 215 SPDSQLLVTASDDGYIKIYDVQHA-NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWD---VGTRTCVHTFFDHQ 290 (321)
T ss_dssp CTTSCEEEEECTTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE---TTTTEEEEEECCCS
T ss_pred cCCCCEEEEEcCCCeEEEEECCCc-ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEe---CCCCEEEEEEcCCC
Confidence 999999999999999999999977 45578999999999999999999999999999999933 22222223344688
Q ss_pred CCeeEEEEcCCCCEEEEEcCCc-EEEEeC
Q 010206 488 MKLLHLAWHPSENSIACAASNS-LYMYYA 515 (515)
Q Consensus 488 ~~i~~~~~s~~~~~la~~~~~~-~~i~~~ 515 (515)
..|.+++|+|++++|++++.|+ +.+|+.
T Consensus 291 ~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 291 DQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp SCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 9999999999999999888665 889973
No 14
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.9e-41 Score=316.21 Aligned_cols=290 Identities=14% Similarity=0.202 Sum_probs=236.8
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
...+|.+.|++++|+|++++||+|+.||.|+|||..+++. ...+..|.
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~-----------------------~~~~~~~~--------- 106 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK-----------------------EHAVTMPC--------- 106 (354)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-----------------------EEEEECSS---------
T ss_pred EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc-----------------------ceEEecCC---------
Confidence 3568999999999999999999999999999999876553 23455565
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..|.+++|+ +++.++++++.|+.+++|++........
T Consensus 107 ---~~v~~~~~s--p~g~~lasg~~d~~i~v~~~~~~~~~~~-------------------------------------- 143 (354)
T 2pbi_B 107 ---TWVMACAYA--PSGCAIACGGLDNKCSVYPLTFDKNENM-------------------------------------- 143 (354)
T ss_dssp ---SCCCEEEEC--TTSSEEEEESTTSEEEEEECCCCTTCCS--------------------------------------
T ss_pred ---CCEEEEEEC--CCCCEEEEeeCCCCEEEEEEeccccccc--------------------------------------
Confidence 679999994 5677999999999999999864320000
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
..... .+.+|...|.+++|+|++..|+++ .|++|++||+++++..
T Consensus 144 ---------------------------------~~~~~-~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~ 189 (354)
T 2pbi_B 144 ---------------------------------AAKKK-SVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLL 189 (354)
T ss_dssp ---------------------------------GGGCE-EEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE
T ss_pred ---------------------------------cccce-eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEE
Confidence 00001 135788999999999999999998 8999999999877644
Q ss_pred cceecccCccccccCCceEEEEEecC--CCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccccee
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 346 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 346 (515)
. .+.+|...|.+++|+|+ + ++|++|+.||.|++||+++++... .+.+|...|.
T Consensus 190 ~--------~~~~h~~~v~~~~~~~~~~g-~~l~sgs~Dg~v~~wd~~~~~~~~----------------~~~~h~~~v~ 244 (354)
T 2pbi_B 190 Q--------SFHGHGADVLCLDLAPSETG-NTFVSGGCDKKAMVWDMRSGQCVQ----------------AFETHESDVN 244 (354)
T ss_dssp E--------EEECCSSCEEEEEECCCSSC-CEEEEEETTSCEEEEETTTCCEEE----------------EECCCSSCEE
T ss_pred E--------EEcCCCCCeEEEEEEeCCCC-CEEEEEeCCCeEEEEECCCCcEEE----------------EecCCCCCeE
Confidence 2 56789999999999884 4 799999999999999999876421 1456778999
Q ss_pred EEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEE
Q 010206 347 DIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 425 (515)
Q Consensus 347 ~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~i 425 (515)
+++|+|++++|++|+. ++|++||++. .+.+..+..+.. ...+.+++|+|++++|++|+.|+.|++
T Consensus 245 ~v~~~p~~~~l~s~s~D~~v~lwd~~~-~~~~~~~~~~~~-------------~~~~~~~~~s~~g~~l~~g~~d~~i~v 310 (354)
T 2pbi_B 245 SVRYYPSGDAFASGSDDATCRLYDLRA-DREVAIYSKESI-------------IFGASSVDFSLSGRLLFAGYNDYTINV 310 (354)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCTTC-------------CSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCC-CcEEEEEcCCCc-------------ccceeEEEEeCCCCEEEEEECCCcEEE
Confidence 9999999999999875 9999999985 544444432221 123568999999999999999999999
Q ss_pred EecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 426 FGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 426 w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
||+.++ .....+.+|..+|.+++|+|++++|++|+.|++|++
T Consensus 311 wd~~~~-~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~v 352 (354)
T 2pbi_B 311 WDVLKG-SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRV 352 (354)
T ss_dssp EETTTC-SEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred EECCCC-ceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEe
Confidence 999887 455788999999999999999999999999999998
No 15
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.3e-41 Score=369.82 Aligned_cols=392 Identities=13% Similarity=0.179 Sum_probs=284.6
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.+.|++++|+|+|++||+|+.||.|+|||+.+++. ...+.+|.
T Consensus 611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~-----------------------~~~~~~h~---------- 657 (1249)
T 3sfz_A 611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK-----------------------LLDIKAHE---------- 657 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----------------------EEEECCCS----------
T ss_pred EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCE-----------------------EEEeccCC----------
Confidence 347999999999999999999999999999999987763 35677888
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCC--cccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG--CGER 188 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~--~l~~ 188 (515)
..|.+++|+ +++.+|++++.|++|++||+.+++.......+ .+.+. .++|+|++. .+
T Consensus 658 --~~v~~~~~s--~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~--------~~~v~-------~~~~~~~~~~~~l-- 716 (1249)
T 3sfz_A 658 --DEVLCCAFS--SDDSYIATCSADKKVKIWDSATGKLVHTYDEH--------SEQVN-------CCHFTNKSNHLLL-- 716 (1249)
T ss_dssp --SCEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCEEEEEECC--------SSCEE-------EEEECSSSSCCEE--
T ss_pred --CCEEEEEEe--cCCCEEEEEeCCCeEEEEECCCCceEEEEcCC--------CCcEE-------EEEEecCCCceEE--
Confidence 889999994 56789999999999999999999877665543 23344 788888544 44
Q ss_pred ccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCc
Q 010206 189 NFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
++++.++.|++|| +... .+... +.+|...|.+++|+|+++.|+++ .|+.|++||+.+.+.
T Consensus 717 ----------~sg~~d~~v~vwd--~~~~------~~~~~-~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~ 777 (1249)
T 3sfz_A 717 ----------ATGSNDFFLKLWD--LNQK------ECRNT-MFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 777 (1249)
T ss_dssp ----------EEEETTSCEEEEE--TTSS------SEEEE-ECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEE
T ss_pred ----------EEEeCCCeEEEEE--CCCc------chhhe-ecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcc
Confidence 8899999999999 4332 23333 46899999999999999999998 899999999976543
Q ss_pred cccee------------------------------------------cccC-----ccccccCCceEEEEEecCCCcEEE
Q 010206 268 SFNIV------------------------------------------DVKP-----ANMEDLTEVITSAEFHPTHCNMLA 300 (515)
Q Consensus 268 ~~~~~------------------------------------------~~~~-----~~~~~~~~~i~~i~~~p~~~~~l~ 300 (515)
...+. +... ....+|...|.+++|+|++ .+++
T Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~ 856 (1249)
T 3sfz_A 778 RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAV 856 (1249)
T ss_dssp EEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST-TEEE
T ss_pred cceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEE
Confidence 22110 0000 0112678889999999998 8999
Q ss_pred EEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCC----
Q 010206 301 YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSG---- 375 (515)
Q Consensus 301 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~---- 375 (515)
+++.|+.|++||+.++.... .+.+|...|.+++|+|++++|++++. +.|++||+.....
T Consensus 857 ~~~~dg~v~vwd~~~~~~~~----------------~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~ 920 (1249)
T 3sfz_A 857 IALSQYCVELWNIDSRLKVA----------------DCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAI 920 (1249)
T ss_dssp EECSSSCEEEEETTTTEEEE----------------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSS
T ss_pred EEeCCCeEEEEEcCCCceee----------------ecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeee
Confidence 99999999999998875422 14566678888888888888888764 8888888542000
Q ss_pred ------------------------CeeeEee----------------------------eccccccccccc-------cC
Q 010206 376 ------------------------PVATFQV----------------------------HEHLRPKLCDLY-------EN 396 (515)
Q Consensus 376 ------------------------~~~~~~~----------------------------~~~~~~~~~~~~-------~~ 396 (515)
....... .....-.+.+.. ..
T Consensus 921 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~ 1000 (1249)
T 3sfz_A 921 VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV 1000 (1249)
T ss_dssp SEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECC
T ss_pred cccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecc
Confidence 0000000 000000000000 00
Q ss_pred CCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCC---------------------------------------cceee
Q 010206 397 DSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS---------------------------------------AESTT 437 (515)
Q Consensus 397 ~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~---------------------------------------~~~~~ 437 (515)
..-..|.+++|+|+|++|++++.||.|++||+.++. .....
T Consensus 1001 ~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~ 1080 (1249)
T 3sfz_A 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERD 1080 (1249)
T ss_dssp CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEE
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEE
Confidence 111235678888888888888888888888876541 12244
Q ss_pred eccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCc-EEEEeC
Q 010206 438 LEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS-LYMYYA 515 (515)
Q Consensus 438 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~-~~i~~~ 515 (515)
+.+|...+.+++++|+++++++++.|++|++++-. .........+|...|++++|+||+++||+++.++ +.+|+.
T Consensus 1081 ~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~---~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~ 1156 (1249)
T 3sfz_A 1081 FTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD---LLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1156 (1249)
T ss_dssp EECCSSCCCCEEECSSSSSCEEECCSSCCCEECSS---SSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEES
T ss_pred EcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECC---CcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 56788899999999999999999999999993322 1122233446889999999999999999998765 888863
No 16
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=8.8e-42 Score=371.17 Aligned_cols=419 Identities=14% Similarity=0.173 Sum_probs=305.8
Q ss_pred cccchhhhhcccccccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeee
Q 010206 15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKT 94 (515)
Q Consensus 15 ~~w~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (515)
..|++... .......+|.+.|++++|+|+|++||+|+.||.|+|||+.+++ ...
T Consensus 640 ~vw~~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~-----------------------~~~ 693 (1249)
T 3sfz_A 640 QVFKAETG---EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK-----------------------LVH 693 (1249)
T ss_dssp EEEETTTC---CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-----------------------EEE
T ss_pred EEEECCCC---CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc-----------------------eEE
Confidence 45666541 1122334799999999999999999999999999999998776 335
Q ss_pred ecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcC
Q 010206 95 EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (515)
Q Consensus 95 ~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 174 (515)
.+.+|. ..|.+++|+|..++.++++++.|+.|++||+.+++.......+ .+.+.
T Consensus 694 ~~~~~~------------~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h--------~~~v~------ 747 (1249)
T 3sfz_A 694 TYDEHS------------EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH--------TNSVN------ 747 (1249)
T ss_dssp EEECCS------------SCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCC--------SSCEE------
T ss_pred EEcCCC------------CcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCC--------CCCEE------
Confidence 677887 8899999987667778999999999999999998866655433 23344
Q ss_pred CCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeeccccccc---------------------------------
Q 010206 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNL--------------------------------- 221 (515)
Q Consensus 175 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~--------------------------------- 221 (515)
.++|+|+++.+ ++++.++.|++|| +.......
T Consensus 748 -~~~~sp~~~~l------------~s~s~dg~v~vwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 812 (1249)
T 3sfz_A 748 -HCRFSPDDELL------------ASCSADGTLRLWD--VRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDK 812 (1249)
T ss_dssp -EEEECSSTTEE------------EEEESSSEEEEEE--GGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSE
T ss_pred -EEEEecCCCEE------------EEEECCCeEEEEe--CCCCcccceecccccccccCCccccccceEEEEEECCCCCE
Confidence 78999999998 9999999999999 43321100
Q ss_pred ---------------ccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCc
Q 010206 222 ---------------VAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV 285 (515)
Q Consensus 222 ---------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 285 (515)
..........+|...|.+++|+|+++.++++ .|+.|++||+.+..... .+.+|...
T Consensus 813 l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~--------~~~~h~~~ 884 (1249)
T 3sfz_A 813 IIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVA--------DCRGHLSW 884 (1249)
T ss_dssp EEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEE--------EECCCSSC
T ss_pred EEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceee--------ecCCCccc
Confidence 0011122234788999999999999999999 89999999998765442 56789999
Q ss_pred eEEEEEecCCCcEEEEEecCCeEEEEecCcccccc---------------------------------------------
Q 010206 286 ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD--------------------------------------------- 320 (515)
Q Consensus 286 i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~--------------------------------------------- 320 (515)
|.+++|+|++ ..|++++.|+.|++||+.+.....
T Consensus 885 v~~v~~spdg-~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 963 (1249)
T 3sfz_A 885 VHGVMFSPDG-SSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQ 963 (1249)
T ss_dssp EEEEEECTTS-SEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSC
T ss_pred eEEEEECCCC-CEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCc
Confidence 9999999998 899999999999999976421100
Q ss_pred -------------------cccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeE
Q 010206 321 -------------------THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATF 380 (515)
Q Consensus 321 -------------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~ 380 (515)
..+..++... ......+.+|...|.+++|+|+|++|++++. +.|++||+.+ ++... +
T Consensus 964 i~~~~~sp~g~~l~~g~~~g~i~i~d~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~-~~~~~-~ 1040 (1249)
T 3sfz_A 964 VSCCCLSPHLEYVAFGDEDGAIKIIELPN-NRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT-GDYVF-L 1040 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSCCEEEETTT-TSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTT-TEEEC-C
T ss_pred EEEEEEcCCCCEEEEEcCCCCEEEEEcCC-CceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-CceEE-E
Confidence 0011111110 1112335678899999999999999999875 9999999875 32221 1
Q ss_pred eeeccccccc-------------------ccccc-------CCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc
Q 010206 381 QVHEHLRPKL-------------------CDLYE-------NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 381 ~~~~~~~~~~-------------------~~~~~-------~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
..|...+..+ .+... ......|++++|+|++++|++++.||.|++||+.++. .
T Consensus 1041 ~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~-~ 1119 (1249)
T 3sfz_A 1041 QAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS-P 1119 (1249)
T ss_dssp BCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSS-C
T ss_pred ecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcc-e
Confidence 1111111000 00000 0011236689999999999999999999999999874 5
Q ss_pred eeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecC--CCCCccc----cCCccccccCCeeEEEEcCCCCEEEEEcCC
Q 010206 435 STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKG--ADNSALD----ANGNAFDFSMKLLHLAWHPSENSIACAASN 508 (515)
Q Consensus 435 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~--~~~~~~~----~~~~~~~~~~~i~~~~~s~~~~~la~~~~~ 508 (515)
...+.+|..+|++++|+|++++|++++.||.|++++- .+..... .......|...|++++|+||+++|++++ +
T Consensus 1120 ~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~-g 1198 (1249)
T 3sfz_A 1120 LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG-G 1198 (1249)
T ss_dssp SBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES-S
T ss_pred eeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC-C
Confidence 5788999999999999999999999999999999332 2111100 0001135788999999999999999887 6
Q ss_pred cEEEEe
Q 010206 509 SLYMYY 514 (515)
Q Consensus 509 ~~~i~~ 514 (515)
.+.+|+
T Consensus 1199 ~v~vwd 1204 (1249)
T 3sfz_A 1199 YLKWWN 1204 (1249)
T ss_dssp SEEEBC
T ss_pred eEEEEE
Confidence 799986
No 17
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.1e-41 Score=321.49 Aligned_cols=285 Identities=15% Similarity=0.218 Sum_probs=238.7
Q ss_pred eeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCC
Q 010206 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (515)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (515)
...+.+|. ..|++++|+| ++.+|++++.|++|++||+.+++....
T Consensus 101 ~~~l~gh~------------~~V~~~~~~p--~~~~l~s~s~Dg~i~vwd~~~~~~~~~--------------------- 145 (410)
T 1vyh_C 101 KYALSGHR------------SPVTRVIFHP--VFSVMVSASEDATIKVWDYETGDFERT--------------------- 145 (410)
T ss_dssp SCEEECCS------------SCEEEEEECS--SSSEEEEEESSSCEEEEETTTCCCCEE---------------------
T ss_pred eEeecccC------------CcEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCcEEEE---------------------
Confidence 34566777 8999999954 567999999999999999987652211
Q ss_pred cCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe
Q 010206 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 252 (515)
Q Consensus 173 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 252 (515)
+.+|...|.+++|+|++++|++|
T Consensus 146 ---------------------------------------------------------l~~h~~~V~~v~~~~~~~~l~sg 168 (410)
T 1vyh_C 146 ---------------------------------------------------------LKGHTDSVQDISFDHSGKLLASC 168 (410)
T ss_dssp ---------------------------------------------------------ECCCSSCEEEEEECTTSSEEEEE
T ss_pred ---------------------------------------------------------EeccCCcEEEEEEcCCCCEEEEE
Confidence 35788999999999999999998
Q ss_pred -CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccC
Q 010206 253 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 331 (515)
Q Consensus 253 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 331 (515)
.|++|++||+.+.+... .+.+|...|.+++|+|++ .+|++|+.|+.|++||++++....
T Consensus 169 s~D~~i~iwd~~~~~~~~--------~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~~----------- 228 (410)
T 1vyh_C 169 SADMTIKLWDFQGFECIR--------TMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVK----------- 228 (410)
T ss_dssp ETTSCCCEEETTSSCEEE--------CCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEE-----------
T ss_pred eCCCeEEEEeCCCCceeE--------EEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEE-----------
Confidence 89999999998665432 567899999999999998 899999999999999999876421
Q ss_pred CCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCC
Q 010206 332 PGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 410 (515)
Q Consensus 332 ~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 410 (515)
.+.+|...|.++.++|++++|++|+. +.|++||+.+ ++....+..|... |.+++|+|+
T Consensus 229 -----~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~-~~~~~~~~~h~~~---------------v~~~~~~~~ 287 (410)
T 1vyh_C 229 -----TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT-KECKAELREHRHV---------------VECISWAPE 287 (410)
T ss_dssp -----EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSC---------------EEEEEECCS
T ss_pred -----EEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCC-CceeeEecCCCce---------------EEEEEEcCc
Confidence 24567789999999999999999875 9999999986 7777788777755 458899886
Q ss_pred --------------------CCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEec
Q 010206 411 --------------------GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK 470 (515)
Q Consensus 411 --------------------~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~ 470 (515)
+.+|++|+.|+.|++||+.++ .....+.+|...|.+++|+|++++|++|+.|+.|++++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd 366 (410)
T 1vyh_C 288 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD 366 (410)
T ss_dssp CGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEEC
T ss_pred ccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC-ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 679999999999999999987 45578899999999999999999999999999999943
Q ss_pred CCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCc-EEEEe
Q 010206 471 GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS-LYMYY 514 (515)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~-~~i~~ 514 (515)
. ...........|...|++++|+|++++|++++.|+ +.+|.
T Consensus 367 ~---~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 367 Y---KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp C---TTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred C---CCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 2 21122233446889999999999999999888665 88886
No 18
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5.5e-41 Score=306.62 Aligned_cols=288 Identities=17% Similarity=0.199 Sum_probs=233.4
Q ss_pred eeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCC
Q 010206 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (515)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (515)
....+.+|. +.|++++|+ +++.+|++++.||+|++||+.+++....
T Consensus 5 ~~~~~~~h~------------~~V~~~~fs--p~~~~l~s~~~dg~v~lWd~~~~~~~~~-------------------- 50 (304)
T 2ynn_A 5 IKKTFSNRS------------DRVKGIDFH--PTEPWVLTTLYSGRVELWNYETQVEVRS-------------------- 50 (304)
T ss_dssp CEEEEEEEC------------SCEEEEEEC--SSSSEEEEEETTSEEEEEETTTTEEEEE--------------------
T ss_pred eEEeecCCC------------CceEEEEEC--CCCCEEEEEcCCCcEEEEECCCCceeEE--------------------
Confidence 445677887 889999995 5677999999999999999987653221
Q ss_pred CcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEE
Q 010206 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 251 (515)
Q Consensus 172 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 251 (515)
+..|...|.+++|+|++++|++
T Consensus 51 ----------------------------------------------------------~~~~~~~v~~~~~~~~~~~l~s 72 (304)
T 2ynn_A 51 ----------------------------------------------------------IQVTETPVRAGKFIARKNWIIV 72 (304)
T ss_dssp ----------------------------------------------------------EECCSSCEEEEEEEGGGTEEEE
T ss_pred ----------------------------------------------------------eeccCCcEEEEEEeCCCCEEEE
Confidence 2456788999999999999999
Q ss_pred e-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeecc
Q 010206 252 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 330 (515)
Q Consensus 252 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 330 (515)
| .|++|++||+++++... .+.+|...|.+++|+|++ .+|++|+.|+.|++||++++....
T Consensus 73 ~s~d~~i~vwd~~~~~~~~--------~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~~---------- 133 (304)
T 2ynn_A 73 GSDDFRIRVFNYNTGEKVV--------DFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALE---------- 133 (304)
T ss_dssp EETTSEEEEEETTTCCEEE--------EEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEEE----------
T ss_pred ECCCCEEEEEECCCCcEEE--------EEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcchh----------
Confidence 8 89999999999876543 567899999999999998 899999999999999998763221
Q ss_pred CCCccccccccccceeEEEEcc-CCCEEEEEcC-CeEEEEEeeCCCCCeeeEee-eccccccccccccCCCccceeeEEE
Q 010206 331 APGTRSFFTEIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFDKFECCL 407 (515)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~ 407 (515)
..+.+|...|.+++|+| ++.+|++|+. ++|++||+.. ..+...+.. +... +..++|
T Consensus 134 -----~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~-~~~~~~~~~~~~~~---------------v~~~~~ 192 (304)
T 2ynn_A 134 -----QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ-STPNFTLTTGQERG---------------VNYVDY 192 (304)
T ss_dssp -----EEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTC-SSCSEEEECCCTTC---------------EEEEEE
T ss_pred -----hhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC-CCccceeccCCcCc---------------EEEEEE
Confidence 12567788999999999 6789999875 9999999986 444444432 2222 347788
Q ss_pred cC--CCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCcccc
Q 010206 408 SG--DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFD 485 (515)
Q Consensus 408 s~--~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~ 485 (515)
+| ++++|++|+.|+.|++||++++ ....++++|...+..++|+|++++|++|+.||+|++++.. ..+.......
T Consensus 193 ~~~~~~~~l~s~s~D~~i~iWd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~---~~~~~~~~~~ 268 (304)
T 2ynn_A 193 YPLPDKPYMITASDDLTIKIWDYQTK-SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS---TYKVEKTLNV 268 (304)
T ss_dssp CCSTTCCEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT---TCCEEEEECC
T ss_pred EEcCCCCEEEEEcCCCeEEEEeCCCC-ccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECC---CCceeeeccC
Confidence 76 7889999999999999999987 5568899999999999999999999999999999994322 2122223334
Q ss_pred ccCCeeEEEEcCCCC--EEEEEcCCcEEEEeC
Q 010206 486 FSMKLLHLAWHPSEN--SIACAASNSLYMYYA 515 (515)
Q Consensus 486 ~~~~i~~~~~s~~~~--~la~~~~~~~~i~~~ 515 (515)
+...+.+++|+|++. ++|++.++++.+|+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~ 300 (304)
T 2ynn_A 269 GLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300 (304)
T ss_dssp SSSSEEEEEECTTCGGGCEEEEETTEEEEEEC
T ss_pred CCccEEEEEECCCCCceEEEEecCCceEEEEe
Confidence 678899999999985 689999999999863
No 19
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.1e-40 Score=336.23 Aligned_cols=386 Identities=12% Similarity=0.121 Sum_probs=288.3
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
...|.+.|++++|+|+|++||+++ ++.|+||++.++.. .......+.+|.
T Consensus 14 ~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~-------------------~~~~~~~~~~h~---------- 63 (615)
T 1pgu_A 14 PSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDS-------------------KVPPVVQFTGHG---------- 63 (615)
T ss_dssp CCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCC-------------------SSCSEEEECTTT----------
T ss_pred CCCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCC-------------------ccccceEEecCC----------
Confidence 347899999999999999999998 78999999986610 001335678887
Q ss_pred ccce-eEEEEEeecCCCcEEEeeeCCCeEEEEEccCC------eeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCC
Q 010206 111 IEEK-INKIRWCQSANSALYLLSTNDKTIKLWKVQEK------KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (515)
Q Consensus 111 ~~~~-v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g 183 (515)
.. |++++|+|..++++|++++.|++|++||+.++ +.........+ .+.+. .++|+|++
T Consensus 64 --~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~------~~~v~-------~~~~s~~~ 128 (615)
T 1pgu_A 64 --SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVL------AGPIS-------DISWDFEG 128 (615)
T ss_dssp --TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECC------SSCEE-------EEEECTTS
T ss_pred --CceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcc------cccEE-------EEEEeCCC
Confidence 88 99999955226789999999999999999755 22222222211 23344 88999999
Q ss_pred CccccccccCCCCCCCCCCCc----ccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCC-EEEEe-CCCcE
Q 010206 184 GCGERNFGCASNDSSFPPGGV----SSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRI 257 (515)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~-~d~~i 257 (515)
+.+ ++++.+ +.+.+|| . ...... +.+|...|.+++|+|+++ .|+++ .|+.|
T Consensus 129 ~~l------------~~~~~~~~~~~~v~~~d--~--------~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v 185 (615)
T 1pgu_A 129 RRL------------CVVGEGRDNFGVFISWD--S--------GNSLGE-VSGHSQRINACHLKQSRPMRSMTVGDDGSV 185 (615)
T ss_dssp SEE------------EEEECCSSCSEEEEETT--T--------CCEEEE-CCSCSSCEEEEEECSSSSCEEEEEETTTEE
T ss_pred CEE------------EEeccCCCCccEEEEEE--C--------CCccee-eecCCccEEEEEECCCCCcEEEEEeCCCcE
Confidence 998 777666 7888887 1 112222 478999999999999998 78887 89999
Q ss_pred EEEeCCCCCcccceecccCccccccCC---ceEEEEEecC-CCcEEEEEecCCeEEEEecCcccccccccceeeeccCCC
Q 010206 258 NLWNLEISNQSFNIVDVKPANMEDLTE---VITSAEFHPT-HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 333 (515)
Q Consensus 258 ~iwd~~~~~~~~~~~~~~~~~~~~~~~---~i~~i~~~p~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 333 (515)
++||+.+.+... .+.+|.. .|.+++|+|+ + ++|++++.|+.|++||+++++.... +
T Consensus 186 ~vwd~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~----~------- 245 (615)
T 1pgu_A 186 VFYQGPPFKFSA--------SDRTHHKQGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGEFLKY----I------- 245 (615)
T ss_dssp EEEETTTBEEEE--------EECSSSCTTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCCEEEE----C-------
T ss_pred EEEeCCCcceee--------eecccCCCCceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCCEeEE----e-------
Confidence 999998665432 4567888 9999999999 8 8999999999999999988764321 1
Q ss_pred cccccc---ccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeee--------------------------
Q 010206 334 TRSFFT---EIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVH-------------------------- 383 (515)
Q Consensus 334 ~~~~~~---~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~-------------------------- 383 (515)
.. .|...|.+++|+ ++++|++++. +.|++||+.+ ++.+..+..+
T Consensus 246 ----~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 319 (615)
T 1pgu_A 246 ----EDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTT-SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 319 (615)
T ss_dssp ----CBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTT-TEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTS
T ss_pred ----cccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCC-CcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCC
Confidence 02 567889999999 9999998765 9999999874 3333332222
Q ss_pred -------------------cccc-----------------------------------------ccc-----------cc
Q 010206 384 -------------------EHLR-----------------------------------------PKL-----------CD 392 (515)
Q Consensus 384 -------------------~~~~-----------------------------------------~~~-----------~~ 392 (515)
...+ ..+ .+
T Consensus 320 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~ 399 (615)
T 1pgu_A 320 TLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNG 399 (615)
T ss_dssp CEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETT
T ss_pred CEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEE
Confidence 0000 000 00
Q ss_pred --------------------------------------------------------------------------------
Q 010206 393 -------------------------------------------------------------------------------- 392 (515)
Q Consensus 393 -------------------------------------------------------------------------------- 392 (515)
T Consensus 400 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~ 479 (615)
T 1pgu_A 400 ITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEV 479 (615)
T ss_dssp EEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEE
T ss_pred cccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccc
Confidence
Q ss_pred --cccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeecc-CCCceeeEEECC----------CCCeeEe
Q 010206 393 --LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA-SKNPMRRQVQTP----------SRPSRPL 459 (515)
Q Consensus 393 --~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~-~~~~v~~~~~~~----------~~~~l~s 459 (515)
.........|++++|+|++++|++++.||.|++||+.++ .....+.+ |..++++++|+| ++++|++
T Consensus 480 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~ 558 (615)
T 1pgu_A 480 SFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR-EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVAT 558 (615)
T ss_dssp EEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEECCSCCCSSCEEEEEECCCC------CCSCCEEEE
T ss_pred cccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC-cceeEeecCCCCceeEEEEcCccccccccccCCCEEEE
Confidence 000011225778999999999999999999999999987 44566777 999999999999 9999999
Q ss_pred ecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCc-EEEEe
Q 010206 460 GSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS-LYMYY 514 (515)
Q Consensus 460 ~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~-~~i~~ 514 (515)
++.||.|++++-.... .......+|...|++++|+|+++ |++++.++ +.+|+
T Consensus 559 ~~~dg~i~iw~~~~~~--~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 559 GSLDTNIFIYSVKRPM--KIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 611 (615)
T ss_dssp EETTSCEEEEESSCTT--CCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred EcCCCcEEEEECCCCc--eechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEe
Confidence 9999999994332211 12223446889999999999999 88777655 88996
No 20
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1e-40 Score=310.50 Aligned_cols=306 Identities=15% Similarity=0.219 Sum_probs=229.7
Q ss_pred ccccc-ceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 32 VQEVD-IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 32 ~~h~~-~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
.+|.+ .|.+++|+|+|++||+|+.|+.|+||++.++... .......+|.
T Consensus 12 ~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~--------------------~~~~~~~~h~---------- 61 (345)
T 3fm0_A 12 PAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI--------------------CKSVLSEGHQ---------- 61 (345)
T ss_dssp CCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE--------------------EEEEECSSCS----------
T ss_pred cCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce--------------------eeeeeccccC----------
Confidence 46777 9999999999999999999999999998765421 0111235777
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|++++|+ +++.+|++++.|+++++|++..+......
T Consensus 62 --~~v~~~~~s--p~g~~l~s~s~D~~v~iw~~~~~~~~~~~-------------------------------------- 99 (345)
T 3fm0_A 62 --RTVRKVAWS--PCGNYLASASFDATTCIWKKNQDDFECVT-------------------------------------- 99 (345)
T ss_dssp --SCEEEEEEC--TTSSEEEEEETTSCEEEEEECCC-EEEEE--------------------------------------
T ss_pred --CcEEEEEEC--CCCCEEEEEECCCcEEEEEccCCCeEEEE--------------------------------------
Confidence 889999995 56789999999999999998765321110
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
. +.+|...|.+++|+|++++|+++ .|++|++||++......
T Consensus 100 -------------------------------------~-~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~ 141 (345)
T 3fm0_A 100 -------------------------------------T-LEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141 (345)
T ss_dssp -------------------------------------E-ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEE
T ss_pred -------------------------------------E-ccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeE
Confidence 1 35788999999999999999998 89999999998654322
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
.+ ..+.+|...|.+++|+|++ .+|++|+.|+.|++||++.+.... ...+.+|...|.+++
T Consensus 142 ~~-----~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~~~--------------~~~~~~h~~~v~~l~ 201 (345)
T 3fm0_A 142 CV-----SVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWVC--------------CATLEGHESTVWSLA 201 (345)
T ss_dssp EE-----EEECCCCSCEEEEEECSSS-SCEEEEETTSCEEEEEEETTEEEE--------------EEEECCCSSCEEEEE
T ss_pred EE-----EEecCcCCCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCCEEE--------------EEEecCCCCceEEEE
Confidence 11 1456799999999999998 899999999999999987754210 112567889999999
Q ss_pred EccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeee-ccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 350 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVH-EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 350 ~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
|+|+|++|++++. ++|++||.............. ......+..+. ...-..|++++|+|++..|++++.|+.|++|+
T Consensus 202 ~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~ 280 (345)
T 3fm0_A 202 FDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLS-GFHSRTIYDIAWCQLTGALATACGDDAIRVFQ 280 (345)
T ss_dssp ECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEEC-SSCSSCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred ECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEec-CCCCCcEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence 9999999999875 999999986422211100000 00000000000 00111366999999999999999999999999
Q ss_pred cCCCCcc--------eeeeccCCCceeeEEECCCCC-eeEeecCCCeEEE
Q 010206 428 CSEGSAE--------STTLEASKNPMRRQVQTPSRP-SRPLGSLSGVVRR 468 (515)
Q Consensus 428 ~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v~l 468 (515)
....... ...+.+|...|++++|+|+++ +|++|+.||+|++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~ 330 (345)
T 3fm0_A 281 EDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAF 330 (345)
T ss_dssp ECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred eCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEE
Confidence 8764321 123468999999999999985 8999999999999
No 21
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.8e-40 Score=305.43 Aligned_cols=290 Identities=17% Similarity=0.210 Sum_probs=235.7
Q ss_pred eeeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCC
Q 010206 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (515)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (515)
+....+.+|. ..|++++| ++++.+|++++.|++|++||+.+++....
T Consensus 46 ~~~~~l~gH~------------~~v~~~~~--s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~------------------- 92 (340)
T 1got_B 46 RTRRTLRGHL------------AKIYAMHW--GTDSRLLLSASQDGKLIIWDSYTTNKVHA------------------- 92 (340)
T ss_dssp CEEEEECCCS------------SCEEEEEE--CTTSSEEEEEETTTEEEEEETTTCCEEEE-------------------
T ss_pred hhheeecCCC------------CceEEEEE--CCCCCEEEEEeCCCcEEEEECCCCCcceE-------------------
Confidence 3456688888 88999999 55678999999999999999887653221
Q ss_pred CCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEE
Q 010206 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 250 (515)
Q Consensus 171 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 250 (515)
+..|...|.+++|+|++++|+
T Consensus 93 -----------------------------------------------------------~~~~~~~v~~~~~s~~~~~l~ 113 (340)
T 1got_B 93 -----------------------------------------------------------IPLRSSWVMTCAYAPSGNYVA 113 (340)
T ss_dssp -----------------------------------------------------------EECSSSCEEEEEECTTSSEEE
T ss_pred -----------------------------------------------------------eecCCccEEEEEECCCCCEEE
Confidence 245678899999999999999
Q ss_pred Ee-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeec
Q 010206 251 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 329 (515)
Q Consensus 251 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 329 (515)
++ .|+.|++||+.+........ ..+.+|...|.++.|++++ .+++++.|+.|++||+++++...
T Consensus 114 s~~~d~~v~iw~~~~~~~~~~~~----~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~~--------- 178 (340)
T 1got_B 114 CGGLDNICSIYNLKTREGNVRVS----RELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQTT--------- 178 (340)
T ss_dssp EEETTCEEEEEETTTCSBSCEEE----EEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEEE---------
T ss_pred EEeCCCeEEEEECccCCCcceeE----EEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEEE---------
Confidence 98 89999999998654322211 2567899999999999986 58999999999999998876432
Q ss_pred cCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEc
Q 010206 330 EAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 408 (515)
Q Consensus 330 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 408 (515)
.+.+|...|.+++|+|+++++++|+. +.|++||+++ +.+...+.+|... |.+++|+
T Consensus 179 -------~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~-~~~~~~~~~h~~~---------------v~~v~~~ 235 (340)
T 1got_B 179 -------TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQTFTGHESD---------------INAICFF 235 (340)
T ss_dssp -------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CSEEEEECCCSSC---------------EEEEEEC
T ss_pred -------EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC-CeeEEEEcCCcCC---------------EEEEEEc
Confidence 25667789999999999999999875 9999999986 7788888877755 5699999
Q ss_pred CCCCEEEEecCCCcEEEEecCCCCcceeeec--cCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccc
Q 010206 409 GDGGRVATGSYSNLFRVFGCSEGSAESTTLE--ASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDF 486 (515)
Q Consensus 409 ~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~ 486 (515)
|++++|++|+.||.|++||++++.. ...+. .+...+.+++|+|++++|++|+.|+.|++++.... .......+|
T Consensus 236 p~~~~l~s~s~d~~v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~---~~~~~~~~h 311 (340)
T 1got_B 236 PNGNAFATGSDDATCRLFDLRADQE-LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---DRAGVLAGH 311 (340)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEE-EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEECC
T ss_pred CCCCEEEEEcCCCcEEEEECCCCcE-EEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC---cEeeEeecC
Confidence 9999999999999999999997643 33333 33457999999999999999999999999443221 222234468
Q ss_pred cCCeeEEEEcCCCCEEEEEcCCc-EEEEe
Q 010206 487 SMKLLHLAWHPSENSIACAASNS-LYMYY 514 (515)
Q Consensus 487 ~~~i~~~~~s~~~~~la~~~~~~-~~i~~ 514 (515)
...|.+++|+|++.+||+++.|+ +.||+
T Consensus 312 ~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 312 DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999999988665 88885
No 22
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-41 Score=325.33 Aligned_cols=344 Identities=10% Similarity=0.152 Sum_probs=260.0
Q ss_pred cccccceEEEEECCCCC-eEEee----------cCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCC
Q 010206 32 VQEVDIISAIEFDKSGD-HLATG----------DRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHE 100 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~-~lasg----------~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 100 (515)
+.+...|.+++|+|+|+ +||+| +.||.|+||++.++... +.... ..|.
T Consensus 9 l~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~--------------------~~~~~-~~~~ 67 (416)
T 2pm9_A 9 LAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE--------------------KPIAS-LQVD 67 (416)
T ss_dssp -CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC--------------------SCSCC-CCCS
T ss_pred HhhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC--------------------cEEEE-EecC
Confidence 45667899999999997 99999 88999999999876521 01111 1344
Q ss_pred CcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceee
Q 010206 101 PEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM 180 (515)
Q Consensus 101 ~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 180 (515)
..|++++| ++++.+|++++.|+.|++||+.+.....
T Consensus 68 ------------~~v~~~~~--s~~~~~l~~~~~dg~v~vw~~~~~~~~~------------------------------ 103 (416)
T 2pm9_A 68 ------------SKFNDLDW--SHNNKIIAGALDNGSLELYSTNEANNAI------------------------------ 103 (416)
T ss_dssp ------------SCEEEEEE--CSSSSCEEEEESSSCEEEECCSSTTSCC------------------------------
T ss_pred ------------CceEEEEE--CCCCCeEEEEccCCeEEEeecccccccc------------------------------
Confidence 78999999 4567799999999999999987631000
Q ss_pred cCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC-CCEEEEe-CCCcEE
Q 010206 181 ANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRIN 258 (515)
Q Consensus 181 ~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~-~d~~i~ 258 (515)
.... .+.+|...|.+++|+|+ +++|+++ .|+.|+
T Consensus 104 -------------------------------------------~~~~-~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 139 (416)
T 2pm9_A 104 -------------------------------------------NSMA-RFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF 139 (416)
T ss_dssp -------------------------------------------CEEE-ECCCSSSCCCEEEECSSSTTBEEEECSSSCEE
T ss_pred -------------------------------------------cchh-hccCCccceEEEEEcCCCCCEEEEEcCCCeEE
Confidence 0000 13578899999999998 8899998 899999
Q ss_pred EEeCCCCC------cccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCC
Q 010206 259 LWNLEISN------QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 332 (515)
Q Consensus 259 iwd~~~~~------~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 332 (515)
+||+++.+ .... ......|...|.+++|+|++..+|++++.|+.|++||+++++... .+..+.
T Consensus 140 iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~----~~~~~~-- 208 (416)
T 2pm9_A 140 IWDMNKCTESPSNYTPLT-----PGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVI----HLSYTS-- 208 (416)
T ss_dssp BCBTTTTSSCTTTCCCBC-----CCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEE----EECCCC--
T ss_pred EEECCCCccccccccccc-----cccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcce----EEeccc--
Confidence 99998776 2221 123467899999999999944899999999999999999876432 222111
Q ss_pred CccccccccccceeEEEEccCC-CEEEEEcC-C---eEEEEEeeCCCCCeeeEe-eeccccccccccccCCCccceeeEE
Q 010206 333 GTRSFFTEIIASISDIKFARNG-RHILSRDY-M---TLKLWDINMDSGPVATFQ-VHEHLRPKLCDLYENDSIFDKFECC 406 (515)
Q Consensus 333 ~~~~~~~~~~~~i~~~~~s~~~-~~l~s~~~-~---~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~ 406 (515)
...+|...|.+++|+|++ .+++++++ + .|++||++....++..+. +|... |.+++
T Consensus 209 ----~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~---------------v~~~~ 269 (416)
T 2pm9_A 209 ----PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKG---------------ILSLD 269 (416)
T ss_dssp ----CSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSC---------------EEEEE
T ss_pred ----cccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCc---------------eeEEE
Confidence 013346789999999997 57888765 6 999999997446677776 66544 56999
Q ss_pred EcC-CCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCC-CeeEeecCCCeEEEecCCCCCccccC----
Q 010206 407 LSG-DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR-PSRPLGSLSGVVRRVKGADNSALDAN---- 480 (515)
Q Consensus 407 ~s~-~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~l~~~~~~~~~~~~---- 480 (515)
|+| ++++|++++.||.|++||++++ .....+..|..++.+++|+|++ .+|++++.|+.|++++-.........
T Consensus 270 ~s~~~~~~l~s~~~dg~v~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~ 348 (416)
T 2pm9_A 270 WCHQDEHLLLSSGRDNTVLLWNPESA-EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETE 348 (416)
T ss_dssp ECSSCSSCEEEEESSSEEEEECSSSC-CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----
T ss_pred eCCCCCCeEEEEeCCCCEEEeeCCCC-ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCccccccc
Confidence 999 9999999999999999999987 4557889999999999999999 89999999999999332211100000
Q ss_pred ----------------------------CccccccCCeeEEEEcCCCCEEEEEcCCc-EEEEeC
Q 010206 481 ----------------------------GNAFDFSMKLLHLAWHPSENSIACAASNS-LYMYYA 515 (515)
Q Consensus 481 ----------------------------~~~~~~~~~i~~~~~s~~~~~la~~~~~~-~~i~~~ 515 (515)
.....+...+..++|+|||++||+++.++ +.||+.
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~ 412 (416)
T 2pm9_A 349 TKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNP 412 (416)
T ss_dssp ------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCC
T ss_pred ccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEe
Confidence 00001566788999999999999998655 888863
No 23
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=8.6e-40 Score=300.46 Aligned_cols=285 Identities=19% Similarity=0.334 Sum_probs=236.2
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.++|++++|+|+|++||+|+.||.|+||+..+++ ....+.+|.
T Consensus 19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-----------------------~~~~~~~h~---------- 65 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----------------------FEKTISGHK---------- 65 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----------------------EEEEECCCS----------
T ss_pred EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-----------------------cchhhccCC----------
Confidence 45899999999999999999999999999999987665 335567787
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|.+++|+ +++++|++++.|+.|++||+.+++....
T Consensus 66 --~~v~~~~~~--~~~~~l~s~~~d~~i~vwd~~~~~~~~~--------------------------------------- 102 (312)
T 4ery_A 66 --LGISDVAWS--SDSNLLVSASDDKTLKIWDVSSGKCLKT--------------------------------------- 102 (312)
T ss_dssp --SCEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCEEEE---------------------------------------
T ss_pred --CceEEEEEc--CCCCEEEEECCCCEEEEEECCCCcEEEE---------------------------------------
Confidence 889999995 5677999999999999999987653221
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
+.+|...|.+++|+|++++|+++ .|+.|++||+++.+...
T Consensus 103 ---------------------------------------~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 143 (312)
T 4ery_A 103 ---------------------------------------LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 143 (312)
T ss_dssp ---------------------------------------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred ---------------------------------------EcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEE
Confidence 24677889999999999999998 89999999998765442
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
.+..|...|.+++|+|++ .+|++++.|+.|++||+++++.... + ...+..++..++
T Consensus 144 --------~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~----~-----------~~~~~~~~~~~~ 199 (312)
T 4ery_A 144 --------TLPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKT----L-----------IDDDNPPVSFVK 199 (312)
T ss_dssp --------EECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEE----E-----------CCSSCCCEEEEE
T ss_pred --------EecCCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeE----E-----------eccCCCceEEEE
Confidence 456789999999999998 8999999999999999988754321 1 123346799999
Q ss_pred EccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEec
Q 010206 350 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 428 (515)
Q Consensus 350 ~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~ 428 (515)
|+|++++|++++. +.|++||+.+ ++.+..+.+|..... .+......+++++|++|+.||.|++||+
T Consensus 200 ~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~l~sg~~dg~i~vwd~ 266 (312)
T 4ery_A 200 FSPNGKYILAATLDNTLKLWDYSK-GKCLKTYTGHKNEKY------------CIFANFSVTGGKWIVSGSEDNLVYIWNL 266 (312)
T ss_dssp ECTTSSEEEEEETTTEEEEEETTT-TEEEEEECSSCCSSS------------CCCEEEECSSSCEEEECCTTSCEEEEET
T ss_pred ECCCCCEEEEEcCCCeEEEEECCC-CcEEEEEEecCCceE------------EEEEEEEeCCCcEEEEECCCCEEEEEEC
Confidence 9999999999875 9999999986 777777776654321 0112333468899999999999999999
Q ss_pred CCCCcceeeeccCCCceeeEEECCCCCeeEeec--CCCeEEE
Q 010206 429 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGS--LSGVVRR 468 (515)
Q Consensus 429 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~d~~v~l 468 (515)
.++ .....+.+|...+..++++|+++++++++ .|++|++
T Consensus 267 ~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~ 307 (312)
T 4ery_A 267 QTK-EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKL 307 (312)
T ss_dssp TTC-CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEE
T ss_pred CCc-hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEE
Confidence 987 56688999999999999999999999986 6999998
No 24
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.3e-40 Score=304.61 Aligned_cols=298 Identities=14% Similarity=0.188 Sum_probs=233.2
Q ss_pred ccccccceEEEEECCCC-CeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 31 EVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g-~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
..+|.++|++++|+|++ ++|++|+.|+.|++|++.+.... .......+.+|.
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~------------------~~~~~~~~~~h~--------- 65 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK------------------FGVPVRSFKGHS--------- 65 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE------------------EEEEEEEEECCS---------
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc------------------ccccceEEeCCc---------
Confidence 45899999999999965 89999999999999998654321 112345678888
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..|.+++| ++++.+|++++.|++|++||+.+++.......+ .+.+. +++|+|++..+
T Consensus 66 ---~~v~~~~~--s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h--------~~~v~-------~~~~~~~~~~l--- 122 (319)
T 3frx_A 66 ---HIVQDCTL--TADGAYALSASWDKTLRLWDVATGETYQRFVGH--------KSDVM-------SVDIDKKASMI--- 122 (319)
T ss_dssp ---SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECC--------SSCEE-------EEEECTTSCEE---
T ss_pred ---ccEEEEEE--CCCCCEEEEEeCCCEEEEEECCCCCeeEEEccC--------CCcEE-------EEEEcCCCCEE---
Confidence 88999999 566789999999999999999999876655433 23444 78999999998
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC------CCEEEEe-CCCcEEEEeC
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD------GETFISA-DDLRINLWNL 262 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~s~-~d~~i~iwd~ 262 (515)
++++.|+.|++|| +.. .+... +.+|...|.++.|.|. +..|+++ .|+.|++||+
T Consensus 123 ---------~s~s~D~~i~vwd--~~~-------~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~ 183 (319)
T 3frx_A 123 ---------ISGSRDKTIKVWT--IKG-------QCLAT-LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 183 (319)
T ss_dssp ---------EEEETTSCEEEEE--TTS-------CEEEE-ECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEET
T ss_pred ---------EEEeCCCeEEEEE--CCC-------CeEEE-EeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEEC
Confidence 9999999999999 332 22223 4689999999999985 4478887 8999999999
Q ss_pred CCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccc
Q 010206 263 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 342 (515)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (515)
++.+... .+.+|...|.+++|+|++ .+|++|+.||.|++||+++++... .+. +.
T Consensus 184 ~~~~~~~--------~~~~h~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~~~~----~~~-------------~~ 237 (319)
T 3frx_A 184 NQFQIEA--------DFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKKAMY----TLS-------------AQ 237 (319)
T ss_dssp TTTEEEE--------EECCCCSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEEE----EEE-------------CC
T ss_pred Ccchhhe--------eecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEE----Eec-------------CC
Confidence 8655332 567899999999999999 899999999999999998876432 222 12
Q ss_pred cceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCc
Q 010206 343 ASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 422 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~ 422 (515)
..|.+++|+|++.+|++++++.+++|++.. ...+..+..+..... ...-..+.+++|+|||++|++|+.||.
T Consensus 238 ~~v~~~~~sp~~~~la~~~~~~i~v~~~~~-~~~~~~~~~~~~~~~-------~~~~~~v~~~~~spdg~~l~sg~~Dg~ 309 (319)
T 3frx_A 238 DEVFSLAFSPNRYWLAAATATGIKVFSLDP-QYLVDDLRPEFAGYS-------KAAEPHAVSLAWSADGQTLFAGYTDNV 309 (319)
T ss_dssp SCEEEEEECSSSSEEEEEETTEEEEEEETT-EEEEEEECCCCTTCC-------GGGCCCEEEEEECTTSSEEEEEETTSC
T ss_pred CcEEEEEEcCCCCEEEEEcCCCcEEEEeCc-CeeeeccCccccccc-------cCcCcceeEEEECCCCCEEEEeecCce
Confidence 579999999999999999887899999975 444444432211000 000112568999999999999999999
Q ss_pred EEEEecCCC
Q 010206 423 FRVFGCSEG 431 (515)
Q Consensus 423 i~iw~~~~~ 431 (515)
|++||+.++
T Consensus 310 i~vWd~~t~ 318 (319)
T 3frx_A 310 IRVWQVMTA 318 (319)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEeec
Confidence 999999764
No 25
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.9e-40 Score=313.00 Aligned_cols=307 Identities=17% Similarity=0.265 Sum_probs=228.3
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.+.|++++|+|+|++||+|+.||+|+|||+.+++. ...+..|.
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~-----------------------~~~~~~h~---------- 108 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK-----------------------THAIKLHC---------- 108 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE-----------------------EEEEECCC----------
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc-----------------------ceEEecCC----------
Confidence 458999999999999999999999999999999877653 35567787
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCC-ccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG-CGERN 189 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~-~l~~~ 189 (515)
..|.+++| ++++++|++++.|+.+++|++.+...... ............+.+. .+.|.|++. .+
T Consensus 109 --~~v~~~~~--s~~g~~las~~~d~~v~iw~~~~~~~~~~-~~~~~~~~~gh~~~v~-------~~~~~~~~~~~l--- 173 (380)
T 3iz6_a 109 --PWVMECAF--APNGQSVACGGLDSACSIFNLSSQADRDG-NMPVSRVLTGHKGYAS-------SCQYVPDQETRL--- 173 (380)
T ss_dssp --TTCCCCEE--CTTSSEEEECCSSSCCEEEECCCCSSCCC-SSTTCCBCCCCSSCCC-------CCBCCSSSSSCE---
T ss_pred --CCEEEEEE--CCCCCEEEEeeCCCcEEEEECCCCccccC-CccceeeccCCCcceE-------EEEEecCCCCEE---
Confidence 77999999 55678999999999999999975421100 0000000001122232 667777643 45
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC-CCCEEEEe-CCCcEEEEeCCCCCc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
++++.|+.|++|| +...+... .....+..+|...|.+++|++ ++.+|++| .|++|++||++....
T Consensus 174 ---------~s~s~D~~i~~wd--~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~ 240 (380)
T 3iz6_a 174 ---------ITGSGDQTCVLWD--VTTGQRIS--IFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR 240 (380)
T ss_dssp ---------EEECTTSCEEEEC--TTTCCEEE--EECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC
T ss_pred ---------EEECCCCcEEEEE--cCCCcEEE--EeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc
Confidence 8999999999999 44322111 011111257899999999987 78899998 899999999985443
Q ss_pred ccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 347 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (515)
... .+.+|...|.+++|+|++ .+|++|+.|+.|++||++++.... .+...... ...+...|.+
T Consensus 241 ~~~-------~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~~~~----~~~~~~~~-----~~~~~~~v~~ 303 (380)
T 3iz6_a 241 AVR-------TYHGHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGHQLQ----VYNREPDR-----NDNELPIVTS 303 (380)
T ss_dssp CCE-------EECCCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTTEEEE----EECCCCSS-----SCCSSCSCSE
T ss_pred ceE-------EECCcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCCcEEE----Eecccccc-----cccccCceEE
Confidence 322 567899999999999998 899999999999999999876532 22211100 1123346899
Q ss_pred EEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeE----eeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCc
Q 010206 348 IKFARNGRHILSRDY-MTLKLWDINMDSGPVATF----QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 422 (515)
Q Consensus 348 ~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~ 422 (515)
++|+|+|++|++|+. |.|++||+.. ++.+..+ .+|... |.+++|+|+|++|++|+.|+.
T Consensus 304 ~~~s~~g~~l~~g~~dg~i~vwd~~~-~~~~~~~~~~~~~h~~~---------------v~~l~~s~dg~~l~sgs~D~~ 367 (380)
T 3iz6_a 304 VAFSISGRLLFAGYSNGDCYVWDTLL-AEMVLNLGTLQNSHEGR---------------ISCLGLSSDGSALCTGSWDKN 367 (380)
T ss_dssp EEECSSSSEEEEECTTSCEEEEETTT-CCEEEEECCSCSSCCCC---------------CCEEEECSSSSEEEEECTTSC
T ss_pred EEECCCCCEEEEEECCCCEEEEECCC-CceEEEEecccCCCCCc---------------eEEEEECCCCCEEEEeeCCCC
Confidence 999999999999875 9999999985 6655555 334433 559999999999999999999
Q ss_pred EEEEecCCC
Q 010206 423 FRVFGCSEG 431 (515)
Q Consensus 423 i~iw~~~~~ 431 (515)
|++|++...
T Consensus 368 i~iW~~~~~ 376 (380)
T 3iz6_a 368 LKIWAFSGH 376 (380)
T ss_dssp EEEEECCSS
T ss_pred EEEEecCCC
Confidence 999999855
No 26
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-40 Score=314.33 Aligned_cols=342 Identities=15% Similarity=0.180 Sum_probs=253.7
Q ss_pred cccccccceEEEEECCCCC-eEEeecCCCeEEEEEc----ccCcccCccccCcccccccccCCccceeeeecccCCCccc
Q 010206 30 EEVQEVDIISAIEFDKSGD-HLATGDRGGRVVLFER----TDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFD 104 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~-~lasg~~dg~v~vw~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 104 (515)
....|.++|++++|+|+|+ +||+|+.||.|++|++ .+++..-.+ .+...+...+.+|.
T Consensus 40 ~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~---- 102 (425)
T 1r5m_A 40 KEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKL-------------TIIAELRHPFALSA---- 102 (425)
T ss_dssp EEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEE-------------EEEEEEECCCCCC-----
T ss_pred eeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccc-------------cccccccccccccc----
Confidence 3456779999999999999 9999999999999999 665520000 00001111122210
Q ss_pred ccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCC
Q 010206 105 YLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (515)
Q Consensus 105 ~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~ 184 (515)
....+...|++++|+ +++.+|++++.|+.|++||. +++....
T Consensus 103 --~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~i~i~~~-~~~~~~~--------------------------------- 144 (425)
T 1r5m_A 103 --SSGKTTNQVTCLAWS--HDGNSIVTGVENGELRLWNK-TGALLNV--------------------------------- 144 (425)
T ss_dssp -------CBCEEEEEEC--TTSSEEEEEETTSCEEEEET-TSCEEEE---------------------------------
T ss_pred --cccCCCCceEEEEEc--CCCCEEEEEeCCCeEEEEeC-CCCeeee---------------------------------
Confidence 000112789999995 56789999999999999993 3221110
Q ss_pred ccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCC
Q 010206 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLE 263 (515)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~ 263 (515)
+..|...|.+++|+|++++|+++ .|+.|++||++
T Consensus 145 ---------------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 179 (425)
T 1r5m_A 145 ---------------------------------------------LNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVI 179 (425)
T ss_dssp ---------------------------------------------ECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred ---------------------------------------------ccCCCccEEEEEECCCCCEEEEEecCCeEEEEECC
Confidence 24677899999999999999998 89999999998
Q ss_pred CCCcccceecccCccccccCCc---------------eEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeee
Q 010206 264 ISNQSFNIVDVKPANMEDLTEV---------------ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 328 (515)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~---------------i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 328 (515)
+++... .+..+... +.+++|+|++ .+++++.++.|++||+++++...
T Consensus 180 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~-------- 241 (425)
T 1r5m_A 180 SGTVMQ--------HFELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTG-------- 241 (425)
T ss_dssp TTEEEE--------EECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSE--------
T ss_pred CCcEEE--------EeeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceee--------
Confidence 765443 22233333 8899999986 68899999999999998865421
Q ss_pred ccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEE
Q 010206 329 QEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 407 (515)
Q Consensus 329 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 407 (515)
.+..|...|.+++|+|++++|++++. +.|++||+.. ++.+..+..|... +.+++|
T Consensus 242 --------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~---------------i~~~~~ 297 (425)
T 1r5m_A 242 --------KLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN-GNSQNCFYGHSQS---------------IVSASW 297 (425)
T ss_dssp --------EECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS-BSCSEEECCCSSC---------------EEEEEE
T ss_pred --------eeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-CccceEecCCCcc---------------EEEEEE
Confidence 14456688999999999999999875 9999999986 7777777766544 569999
Q ss_pred cCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCC------------
Q 010206 408 SGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNS------------ 475 (515)
Q Consensus 408 s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~------------ 475 (515)
+|++ +|++++.|+.|++||+.++ .....+..|..++..++++|++++|++++.||.|++++-....
T Consensus 298 ~~~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 375 (425)
T 1r5m_A 298 VGDD-KVISCSMDGSVRLWSLKQN-TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDG 375 (425)
T ss_dssp ETTT-EEEEEETTSEEEEEETTTT-EEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-----------
T ss_pred CCCC-EEEEEeCCCcEEEEECCCC-cEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeeccccc
Confidence 9999 9999999999999999987 4557888999999999999999999999999999992221100
Q ss_pred -----ccccCCccccccC--CeeEEEEcCCCCEEEEEcCCc-EEEEeC
Q 010206 476 -----ALDANGNAFDFSM--KLLHLAWHPSENSIACAASNS-LYMYYA 515 (515)
Q Consensus 476 -----~~~~~~~~~~~~~--~i~~~~~s~~~~~la~~~~~~-~~i~~~ 515 (515)
..........|.. .|.+++|+|++++|++++.++ +.+|+.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 376 ILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI 423 (425)
T ss_dssp ---CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred ccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence 0001222334544 999999999999999888665 889863
No 27
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.2e-39 Score=307.22 Aligned_cols=298 Identities=16% Similarity=0.311 Sum_probs=227.1
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCc------ccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPE------FDY 105 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~------~~~ 105 (515)
.+|.+.|.|++|+|||++||+|+ ++.++||++.+++.. ..+..|... +..
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~-----------------------~~l~~~~~~~~~~~~~~~ 116 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLV-----------------------ARLSDDSAANKDPENLNT 116 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEE-----------------------EEECC-------------
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEE-----------------------EEecCccccccccccccc
Confidence 46999999999999999999987 678999999877643 111111100 000
Q ss_pred cccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCc
Q 010206 106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (515)
Q Consensus 106 ~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 185 (515)
.........|++++| ++++++|++++.|++|++||+.+++....
T Consensus 117 ~~~~~~~~~v~~v~~--s~dg~~l~s~~~d~~i~iwd~~~~~~~~~---------------------------------- 160 (393)
T 1erj_A 117 SSSPSSDLYIRSVCF--SPDGKFLATGAEDRLIRIWDIENRKIVMI---------------------------------- 160 (393)
T ss_dssp ----CCCCBEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEE----------------------------------
T ss_pred cccCCCceeEEEEEE--CCCCCEEEEEcCCCeEEEEECCCCcEEEE----------------------------------
Confidence 000011145999999 55778999999999999999987653221
Q ss_pred cccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCC
Q 010206 186 GERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI 264 (515)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~ 264 (515)
+.+|...|.+++|+|+++.|+++ .|++|++||+++
T Consensus 161 --------------------------------------------~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~ 196 (393)
T 1erj_A 161 --------------------------------------------LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT 196 (393)
T ss_dssp --------------------------------------------ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred --------------------------------------------EccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC
Confidence 35788999999999999999998 899999999987
Q ss_pred CCcccceecccCccccccCCceEEEEEec-CCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccc
Q 010206 265 SNQSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 343 (515)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (515)
++.... ..+...+.+++|+| ++ .+|++|+.|+.|++||++++..... +... .....+|..
T Consensus 197 ~~~~~~---------~~~~~~v~~~~~~~~~~-~~l~~~s~d~~v~iwd~~~~~~~~~----~~~~-----~~~~~~h~~ 257 (393)
T 1erj_A 197 GQCSLT---------LSIEDGVTTVAVSPGDG-KYIAAGSLDRAVRVWDSETGFLVER----LDSE-----NESGTGHKD 257 (393)
T ss_dssp TEEEEE---------EECSSCEEEEEECSTTC-CEEEEEETTSCEEEEETTTCCEEEE----EC-----------CCCSS
T ss_pred CeeEEE---------EEcCCCcEEEEEECCCC-CEEEEEcCCCcEEEEECCCCcEEEe----eccc-----ccCCCCCCC
Confidence 654322 12567799999999 66 8999999999999999988764321 1111 111356888
Q ss_pred ceeEEEEccCCCEEEEEcC-CeEEEEEeeCCC-----------CCeeeEeeeccccccccccccCCCccceeeEEEcCCC
Q 010206 344 SISDIKFARNGRHILSRDY-MTLKLWDINMDS-----------GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 411 (515)
Q Consensus 344 ~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 411 (515)
.|.+++|+|++++|++|+. +.|++||++... .+...+.+|... |.+++|+|++
T Consensus 258 ~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~---------------v~~~~~~~~~ 322 (393)
T 1erj_A 258 SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF---------------VLSVATTQND 322 (393)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSC---------------EEEEEECGGG
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCc---------------EEEEEECCCC
Confidence 9999999999999999875 999999997521 122344444433 5699999999
Q ss_pred CEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECC------CCCeeEeecCCCeEEE
Q 010206 412 GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTP------SRPSRPLGSLSGVVRR 468 (515)
Q Consensus 412 ~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~l~s~~~d~~v~l 468 (515)
++|++|+.|+.|++||+.++ .....+.+|...|.++++++ ++.+|++|+.||+|++
T Consensus 323 ~~l~sgs~D~~v~iwd~~~~-~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~i 384 (393)
T 1erj_A 323 EYILSGSKDRGVLFWDKKSG-NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 384 (393)
T ss_dssp CEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEE
T ss_pred CEEEEEeCCCeEEEEECCCC-eEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEE
Confidence 99999999999999999987 45578999999999999876 6889999999999999
No 28
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4e-40 Score=307.53 Aligned_cols=245 Identities=9% Similarity=0.094 Sum_probs=187.7
Q ss_pred ccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEE
Q 010206 231 HAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 310 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~ 310 (515)
.+|...|.+++|+|++.+++++.|++|++||+.+++..... .....+|...|++++|+|++ ++|++|+.|+.|++
T Consensus 91 ~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~----~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~i 165 (357)
T 4g56_B 91 VQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVN----KFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKV 165 (357)
T ss_dssp EECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCC----CEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEE
T ss_pred CCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEE----eeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEE
Confidence 46788899999999998777668999999999876543211 11345789999999999999 89999999999999
Q ss_pred EecCcccccccccceeeeccCCCccccccccccceeEEEEccCCC-EEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccc
Q 010206 311 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HILSRD-YMTLKLWDINMDSGPVATFQVHEHLRP 388 (515)
Q Consensus 311 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~ 388 (515)
||+++++... .+.+|...|.+++|+|++. ++++++ |+.|++||+++ +++...+..+...
T Consensus 166 wd~~~~~~~~----------------~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~-- 226 (357)
T 4g56_B 166 WDLSQKAVLK----------------SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK-PKPATRIDFCASD-- 226 (357)
T ss_dssp EETTTTEEEE----------------EECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS-SSCBCBCCCTTCC--
T ss_pred EECCCCcEEE----------------EEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCC-Cceeeeeeecccc--
Confidence 9999876532 2566778999999999875 666665 59999999986 5555544332211
Q ss_pred cccccccCCCccceeeEEEcCC-CCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCC-CeeEeecCCCeE
Q 010206 389 KLCDLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR-PSRPLGSLSGVV 466 (515)
Q Consensus 389 ~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v 466 (515)
..+++++|+|+ +.+|++|+.|+.|++||++++ .....+.+|..+|++++|+|++ ++|++|+.|++|
T Consensus 227 -----------~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i 294 (357)
T 4g56_B 227 -----------TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTV 294 (357)
T ss_dssp -----------SCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCE
T ss_pred -----------ccccchhhhhcccceEEEeecccceeEEECCCC-cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEE
Confidence 11568999997 568999999999999999987 4557899999999999999987 579999999999
Q ss_pred EEecCCCCCccccCCccccccCCeeEEEEcC-CCCEEEEEcCC-cEEEEeC
Q 010206 467 RRVKGADNSALDANGNAFDFSMKLLHLAWHP-SENSIACAASN-SLYMYYA 515 (515)
Q Consensus 467 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~la~~~~~-~~~i~~~ 515 (515)
++++.... +. ...++|...|++++|+| |+++||+++.| .+++|+.
T Consensus 295 ~iwd~~~~---~~-~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~ 341 (357)
T 4g56_B 295 AVLDADFS---EV-FRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHL 341 (357)
T ss_dssp EEECTTSC---EE-EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred EEEECCCC---cE-eEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEEC
Confidence 99432211 11 13347899999999999 79999988755 5899973
No 29
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.5e-39 Score=302.61 Aligned_cols=306 Identities=13% Similarity=0.191 Sum_probs=228.3
Q ss_pred ccccccceEEEEE-----CC-CCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccc
Q 010206 31 EVQEVDIISAIEF-----DK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFD 104 (515)
Q Consensus 31 ~~~h~~~v~~v~~-----s~-~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 104 (515)
..+|.+.|++++| ++ ++++||+|+.|++|+|||+.+.+..+ ........+.+|.
T Consensus 17 l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~----------------~~~~~~~~l~~h~---- 76 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG----------------YFGIPHKALTGHN---- 76 (343)
T ss_dssp EECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS----------------BSEEEEEEECCCS----
T ss_pred eccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc----------------ccccccchhccCC----
Confidence 4589999999999 77 99999999999999999987654210 0112345677888
Q ss_pred ccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCC
Q 010206 105 YLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (515)
Q Consensus 105 ~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~ 184 (515)
..|++++|+ +++.++++++.|++|++||+++++.......+ .+.+. +++|+|+++
T Consensus 77 --------~~V~~~~~~--~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h--------~~~v~-------~v~~sp~~~ 131 (343)
T 2xzm_R 77 --------HFVSDLALS--QENCFAISSSWDKTLRLWDLRTGTTYKRFVGH--------QSEVY-------SVAFSPDNR 131 (343)
T ss_dssp --------SCEEEEEEC--SSTTEEEEEETTSEEEEEETTSSCEEEEEECC--------CSCEE-------EEEECSSTT
T ss_pred --------CceEEEEEC--CCCCEEEEEcCCCcEEEEECCCCcEEEEEcCC--------CCcEE-------EEEECCCCC
Confidence 889999995 56779999999999999999998766555433 23444 889999999
Q ss_pred ccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCC----------CEEEEe-C
Q 010206 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG----------ETFISA-D 253 (515)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~l~s~-~ 253 (515)
.+ ++++.|+.|++|| +..... .......+|...|.+++|+|++ .+|+++ .
T Consensus 132 ~l------------~s~~~d~~i~~wd--~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~ 192 (343)
T 2xzm_R 132 QI------------LSAGAEREIKLWN--ILGECK-----FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGW 192 (343)
T ss_dssp EE------------EEEETTSCEEEEE--SSSCEE-----EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEET
T ss_pred EE------------EEEcCCCEEEEEe--ccCCce-----eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcC
Confidence 98 9999999999999 331110 0001123788999999999987 688888 8
Q ss_pred CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCC
Q 010206 254 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 333 (515)
Q Consensus 254 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 333 (515)
|+.|++||.. .+.. ..+.+|...|.+++|+|++ ++|++|+.|+.|++||++...... ..+
T Consensus 193 d~~i~iwd~~-~~~~--------~~~~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~~~~~---~~~------- 252 (343)
T 2xzm_R 193 DGRLKVWNTN-FQIR--------YTFKAHESNVNHLSISPNG-KYIATGGKDKKLLIWDILNLTYPQ---REF------- 252 (343)
T ss_dssp TSEEEEEETT-TEEE--------EEEECCSSCEEEEEECTTS-SEEEEEETTCEEEEEESSCCSSCS---EEE-------
T ss_pred CCEEEEEcCC-Ccee--------EEEcCccccceEEEECCCC-CEEEEEcCCCeEEEEECCCCcccc---eee-------
Confidence 9999999953 2211 1557799999999999999 899999999999999995433211 111
Q ss_pred ccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCee--eEeeeccccccccccccCCCccceeeEEEcCCC
Q 010206 334 TRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVA--TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 411 (515)
Q Consensus 334 ~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 411 (515)
.+...|.+++|+|++++++++.++.|++||+.+ .+... .+..+.. ...... ......+++++|+|+|
T Consensus 253 ------~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~-~~~~~~~~~~~~~~--~~~~~~--~~~~~~v~~~~~sp~g 321 (343)
T 2xzm_R 253 ------DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMT-QSKAPVCTIEAEPI--TKAEGQ--KGKNPQCTSLAWNALG 321 (343)
T ss_dssp ------ECSSCEEEEEECSSSCEEEEEESSCEEEEESSS-CCSCSEEECCCCSG--GGBTTB--CCSCCCEEEEEECSSS
T ss_pred ------cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCC-CCCCceEEeecCcc--hhhhhh--cCCCCceEEEEECCCC
Confidence 123569999999999999988888899999986 44433 3321110 000000 0111236699999999
Q ss_pred CEEEEecCCCcEEEEecCCC
Q 010206 412 GRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 412 ~~l~s~s~dg~i~iw~~~~~ 431 (515)
++|++|+.||.|++|+++++
T Consensus 322 ~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 322 KKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CCEEEEETTSEEEEEEEEEE
T ss_pred CeEEEecCCceEEEEEEEcc
Confidence 99999999999999998764
No 30
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.1e-39 Score=307.91 Aligned_cols=308 Identities=14% Similarity=0.138 Sum_probs=238.9
Q ss_pred ceeeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccC
Q 010206 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (515)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 169 (515)
..+...+.+|. +.|++++|+ +++.+|++|+.|++|++||+.+++.......+ ...+.
T Consensus 56 ~~~~~~l~gH~------------~~V~~~~~s--p~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h--------~~~v~- 112 (380)
T 3iz6_a 56 LVCCRTLQGHS------------GKVYSLDWT--PEKNWIVSASQDGRLIVWNALTSQKTHAIKLH--------CPWVM- 112 (380)
T ss_dssp CEEEEEECCCS------------SCEEEEEEC--TTSSCEEEEETTSEEEEEETTTTEEEEEEECC--------CTTCC-
T ss_pred eEEeecccccc------------cEEEEEEEc--CCCCEEEEEeCCCeEEEEECCCCccceEEecC--------CCCEE-
Confidence 34556788998 899999995 56779999999999999999998876665544 23344
Q ss_pred CCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC-CCE
Q 010206 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GET 248 (515)
Q Consensus 170 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~ 248 (515)
.++|+|+|+.+ ++++.|+.+++|+ +...............+.+|...|.++.|.|+ +..
T Consensus 113 ------~~~~s~~g~~l------------as~~~d~~v~iw~--~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~ 172 (380)
T 3iz6_a 113 ------ECAFAPNGQSV------------ACGGLDSACSIFN--LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETR 172 (380)
T ss_dssp ------CCEECTTSSEE------------EECCSSSCCEEEE--CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSC
T ss_pred ------EEEECCCCCEE------------EEeeCCCcEEEEE--CCCCccccCCccceeeccCCCcceEEEEEecCCCCE
Confidence 78999999999 9999999999999 44322111111112225789999999999997 456
Q ss_pred EEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceee
Q 010206 249 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 327 (515)
Q Consensus 249 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 327 (515)
|++| .|++|++||+++++....+ ......+|...|.+++|+|.+.++|++|+.|+.|++||++.....
T Consensus 173 l~s~s~D~~i~~wd~~~~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~-------- 241 (380)
T 3iz6_a 173 LITGSGDQTCVLWDVTTGQRISIF---GSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRA-------- 241 (380)
T ss_dssp EEEECTTSCEEEECTTTCCEEEEE---CCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCC--------
T ss_pred EEEECCCCcEEEEEcCCCcEEEEe---ecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcc--------
Confidence 8887 8999999999977644221 111225789999999998733389999999999999999754211
Q ss_pred eccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEE
Q 010206 328 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC 406 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 406 (515)
...+.+|...|.+++|+|++++|++|++ ++|++||+++ ++.+..+..+..... .....+++++
T Consensus 242 -------~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~-~~~~~~~~~~~~~~~--------~~~~~v~~~~ 305 (380)
T 3iz6_a 242 -------VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT-GHQLQVYNREPDRND--------NELPIVTSVA 305 (380)
T ss_dssp -------CEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTT-TEEEEEECCCCSSSC--------CSSCSCSEEE
T ss_pred -------eEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCC-CcEEEEecccccccc--------cccCceEEEE
Confidence 1225678899999999999999999875 9999999996 666666654432110 1112256899
Q ss_pred EcCCCCEEEEecCCCcEEEEecCCCCcceeee----ccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 407 LSGDGGRVATGSYSNLFRVFGCSEGSAESTTL----EASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 407 ~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
|+|+|++|++|+.||.|++||+.+++.. ..+ .+|...|.+++|+|++++|++|+.|++|++
T Consensus 306 ~s~~g~~l~~g~~dg~i~vwd~~~~~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~i 370 (380)
T 3iz6_a 306 FSISGRLLFAGYSNGDCYVWDTLLAEMV-LNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKI 370 (380)
T ss_dssp ECSSSSEEEEECTTSCEEEEETTTCCEE-EEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEE
T ss_pred ECCCCCEEEEEECCCCEEEEECCCCceE-EEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEE
Confidence 9999999999999999999999877433 344 689999999999999999999999999999
No 31
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=7.2e-39 Score=298.01 Aligned_cols=299 Identities=15% Similarity=0.220 Sum_probs=229.6
Q ss_pred eeeeecccCCCcccccccccccc-eeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccC
Q 010206 91 RYKTEFQSHEPEFDYLKSLEIEE-KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (515)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~-~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 169 (515)
..+..+.+|. . .|.+++|+ +++.+|++++.|++|++||+.+++.....
T Consensus 6 ~~~~~~~~h~------------~~~v~~l~~s--p~g~~las~~~D~~i~iw~~~~~~~~~~~----------------- 54 (345)
T 3fm0_A 6 VLLGRVPAHP------------DSRCWFLAWN--PAGTLLASCGGDRRIRIWGTEGDSWICKS----------------- 54 (345)
T ss_dssp EEEEEECCST------------TSCEEEEEEC--TTSSCEEEEETTSCEEEEEEETTEEEEEE-----------------
T ss_pred EEeeeecCCC------------CCcEEEEEEC--CCCCEEEEEcCCCeEEEEEcCCCcceeee-----------------
Confidence 4556778887 5 89999994 56789999999999999998876422110
Q ss_pred CCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEE
Q 010206 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF 249 (515)
Q Consensus 170 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 249 (515)
....+|...|.+++|+|++++|
T Consensus 55 ----------------------------------------------------------~~~~~h~~~v~~~~~sp~g~~l 76 (345)
T 3fm0_A 55 ----------------------------------------------------------VLSEGHQRTVRKVAWSPCGNYL 76 (345)
T ss_dssp ----------------------------------------------------------EECSSCSSCEEEEEECTTSSEE
T ss_pred ----------------------------------------------------------eeccccCCcEEEEEECCCCCEE
Confidence 0125788999999999999999
Q ss_pred EEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeee
Q 010206 250 ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 328 (515)
Q Consensus 250 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 328 (515)
+++ .|++|++||+........ ..+.+|...|.+++|+|++ ++|++|+.|+.|++||++.+.... .
T Consensus 77 ~s~s~D~~v~iw~~~~~~~~~~------~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~----~--- 142 (345)
T 3fm0_A 77 ASASFDATTCIWKKNQDDFECV------TTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYE----C--- 142 (345)
T ss_dssp EEEETTSCEEEEEECCC-EEEE------EEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCEE----E---
T ss_pred EEEECCCcEEEEEccCCCeEEE------EEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCeE----E---
Confidence 998 899999999876542211 2567899999999999998 899999999999999998753210 0
Q ss_pred ccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCC--CeeeEeeeccccccccccccCCCccceeeE
Q 010206 329 QEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSG--PVATFQVHEHLRPKLCDLYENDSIFDKFEC 405 (515)
Q Consensus 329 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 405 (515)
...+.+|...|.+++|+|++++|++++. +.|++||... .. +...+.+|... |+++
T Consensus 143 ------~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~-~~~~~~~~~~~h~~~---------------v~~l 200 (345)
T 3fm0_A 143 ------VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE-DDWVCCATLEGHEST---------------VWSL 200 (345)
T ss_dssp ------EEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEET-TEEEEEEEECCCSSC---------------EEEE
T ss_pred ------EEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecC-CCEEEEEEecCCCCc---------------eEEE
Confidence 1124567789999999999999999875 9999999985 43 34566666654 5699
Q ss_pred EEcCCCCEEEEecCCCcEEEEecCCCCcc--------------eeeecc-CCCceeeEEECCCCCeeEeecCCCeEEEec
Q 010206 406 CLSGDGGRVATGSYSNLFRVFGCSEGSAE--------------STTLEA-SKNPMRRQVQTPSRPSRPLGSLSGVVRRVK 470 (515)
Q Consensus 406 ~~s~~~~~l~s~s~dg~i~iw~~~~~~~~--------------~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~ 470 (515)
+|+|+|++|++|+.|++|++|+....... ...+.+ |...|..++|+|++..|++++.|+.|++++
T Consensus 201 ~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~ 280 (345)
T 3fm0_A 201 AFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQ 280 (345)
T ss_dssp EECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred EECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence 99999999999999999999997432211 123333 888999999999999999999999999932
Q ss_pred CCCC---Cccc--cCC-ccccccCCeeEEEEcCCCC-EEEEEcCCc-EEEEe
Q 010206 471 GADN---SALD--ANG-NAFDFSMKLLHLAWHPSEN-SIACAASNS-LYMYY 514 (515)
Q Consensus 471 ~~~~---~~~~--~~~-~~~~~~~~i~~~~~s~~~~-~la~~~~~~-~~i~~ 514 (515)
.... .... +.. ...+|...|++++|+|++. +||+++.|+ +.+|.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~ 332 (345)
T 3fm0_A 281 EDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWK 332 (345)
T ss_dssp ECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred eCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEE
Confidence 2111 1000 000 1235889999999999984 898887655 88986
No 32
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-39 Score=296.99 Aligned_cols=295 Identities=15% Similarity=0.238 Sum_probs=214.6
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeec-cc-CCCccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-QS-HEPEFDYLKS 108 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~~~~~~~ 108 (515)
..+|.++|.+++|+|+ +||+|+.|+.|+||++..+.. .....+ .+ |.
T Consensus 10 ~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~---------------------~~~~~~~~~~h~-------- 58 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF---------------------TLIDVLDETAHK-------- 58 (330)
T ss_dssp EECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC---------------------EEEEEECTTCCC--------
T ss_pred eccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe---------------------EEEEEEecCCcc--------
Confidence 4579999999999988 999999999999999875431 122233 23 76
Q ss_pred ccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccc
Q 010206 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (515)
Q Consensus 109 ~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~ 188 (515)
..|++++|+ +++.+|++++.|++|++||+........ .
T Consensus 59 ----~~v~~v~~s--p~~~~las~s~D~~v~iw~~~~~~~~~~---~--------------------------------- 96 (330)
T 2hes_X 59 ----KAIRSVAWR--PHTSLLAAGSFDSTVSIWAKEESADRTF---E--------------------------------- 96 (330)
T ss_dssp ----SCEEEEEEC--TTSSEEEEEETTSCEEEEEC-------C---C---------------------------------
T ss_pred ----CCEEEEEEC--CCCCEEEEEeCCCcEEEEEcccCcCccc---c---------------------------------
Confidence 889999995 5677999999999999999864320000 0
Q ss_pred ccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCc
Q 010206 189 NFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
..+... +.+|...|.+++|+|++++|+++ .|++|++||++....
T Consensus 97 ----------------------------------~~~~~~-~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~ 141 (330)
T 2hes_X 97 ----------------------------------MDLLAI-IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE 141 (330)
T ss_dssp ----------------------------------CEEEEE-EC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCC
T ss_pred ----------------------------------ceeEEE-EcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCC
Confidence 001111 46899999999999999999998 899999999954332
Q ss_pred ccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 347 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (515)
....+ ..+.+|...|.+++|+|++ .+|++|+.|+.|++||.+++... . ...+.+|...|.+
T Consensus 142 ~~~~~----~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~~--~------------~~~~~~h~~~v~~ 202 (330)
T 2hes_X 142 EYECI----SVLQEHSQDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDWE--C------------VAVLNGHEGTVWS 202 (330)
T ss_dssp CCEEE----EEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEEE--E------------EEEECCCSSCEEE
T ss_pred CeEEE----EEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCee--E------------EEEccCCCCcEEE
Confidence 21111 1567899999999999998 89999999999999998764210 0 1125678899999
Q ss_pred EEEccC--CCEEEEEcC-CeEEEEEeeCCCC-------CeeeEee-eccccccccccccCCCccceeeEEEcCCCCEEEE
Q 010206 348 IKFARN--GRHILSRDY-MTLKLWDINMDSG-------PVATFQV-HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT 416 (515)
Q Consensus 348 ~~~s~~--~~~l~s~~~-~~i~iwd~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 416 (515)
++|+|+ +.+|++|+. ++|++||+..... ....+.. |. ..|++++|++++ +|++
T Consensus 203 ~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~---------------~~v~~v~~s~~~-~l~s 266 (330)
T 2hes_X 203 SDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK---------------RQVYNVAWGFNG-LIAS 266 (330)
T ss_dssp EEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCS---------------SCEEEEEECTTS-CEEE
T ss_pred EEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccc---------------cceEEEEEcCCC-EEEE
Confidence 999998 778888765 9999999975211 1111111 22 126699999665 7999
Q ss_pred ecCCCcEEEEecCCCCc--ceeeeccCCC-ceeeEEECC--CCCeeEeecCCCeEEE
Q 010206 417 GSYSNLFRVFGCSEGSA--ESTTLEASKN-PMRRQVQTP--SRPSRPLGSLSGVVRR 468 (515)
Q Consensus 417 ~s~dg~i~iw~~~~~~~--~~~~~~~~~~-~v~~~~~~~--~~~~l~s~~~d~~v~l 468 (515)
++.||.|++|+..++.. ....+.+|.. .+..++|+| ++++|++|+.||+|++
T Consensus 267 ~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~ 323 (330)
T 2hes_X 267 VGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNF 323 (330)
T ss_dssp EETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEE
T ss_pred EeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEE
Confidence 99999999999986632 2233467876 899999999 7899999999999999
No 33
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.1e-38 Score=297.70 Aligned_cols=292 Identities=14% Similarity=0.175 Sum_probs=232.6
Q ss_pred eeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCC
Q 010206 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (515)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (515)
....+.+|. ..|++++|+ +++.+|++++.|++|++||..+++....
T Consensus 56 ~~~~l~gH~------------~~V~~~~~s--~d~~~l~s~s~Dg~v~vWd~~~~~~~~~-------------------- 101 (354)
T 2pbi_B 56 TRRTLKGHG------------NKVLCMDWC--KDKRRIVSSSQDGKVIVWDSFTTNKEHA-------------------- 101 (354)
T ss_dssp EEEEEECCS------------SCEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCEEEE--------------------
T ss_pred EEEEecCCC------------CeEEEEEEC--CCCCEEEEEeCCCeEEEEECCCCCcceE--------------------
Confidence 445678888 899999995 5678999999999999999877653221
Q ss_pred CcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEE
Q 010206 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 251 (515)
Q Consensus 172 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 251 (515)
+..|...|.+++|+|++..|++
T Consensus 102 ----------------------------------------------------------~~~~~~~v~~~~~sp~g~~las 123 (354)
T 2pbi_B 102 ----------------------------------------------------------VTMPCTWVMACAYAPSGCAIAC 123 (354)
T ss_dssp ----------------------------------------------------------EECSSSCCCEEEECTTSSEEEE
T ss_pred ----------------------------------------------------------EecCCCCEEEEEECCCCCEEEE
Confidence 1345577899999999999999
Q ss_pred e-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeecc
Q 010206 252 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 330 (515)
Q Consensus 252 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 330 (515)
+ .|+.+++|++......... .....+.+|...|.+++|+|++ ..|++++.|+.|++||+++++...
T Consensus 124 g~~d~~i~v~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~~~---------- 190 (354)
T 2pbi_B 124 GGLDNKCSVYPLTFDKNENMA--AKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQLLQ---------- 190 (354)
T ss_dssp ESTTSEEEEEECCCCTTCCSG--GGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEE----------
T ss_pred eeCCCCEEEEEEecccccccc--ccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeEEE----------
Confidence 8 8999999998754221100 0112556799999999999998 899999999999999999876432
Q ss_pred CCCccccccccccceeEEEEcc--CCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEE
Q 010206 331 APGTRSFFTEIIASISDIKFAR--NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 407 (515)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~~~s~--~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 407 (515)
.+.+|...|.+++|+| ++++|++|+. +.|++||+++ ++++..+..|... |.+++|
T Consensus 191 ------~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~-~~~~~~~~~h~~~---------------v~~v~~ 248 (354)
T 2pbi_B 191 ------SFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS-GQCVQAFETHESD---------------VNSVRY 248 (354)
T ss_dssp ------EEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT-CCEEEEECCCSSC---------------EEEEEE
T ss_pred ------EEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC-CcEEEEecCCCCC---------------eEEEEE
Confidence 2566778999999987 5789999875 9999999996 7888888877755 569999
Q ss_pred cCCCCEEEEecCCCcEEEEecCCCCcceeeec--cCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCcccc
Q 010206 408 SGDGGRVATGSYSNLFRVFGCSEGSAESTTLE--ASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFD 485 (515)
Q Consensus 408 s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~ 485 (515)
+|++++|++|+.|++|++||++++. ....+. .+...+..++|+|++++|++|+.|+.|++++.... .......+
T Consensus 249 ~p~~~~l~s~s~D~~v~lwd~~~~~-~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~---~~~~~l~~ 324 (354)
T 2pbi_B 249 YPSGDAFASGSDDATCRLYDLRADR-EVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG---SRVSILFG 324 (354)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTE-EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---SEEEEECC
T ss_pred eCCCCEEEEEeCCCeEEEEECCCCc-EEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC---ceEEEEEC
Confidence 9999999999999999999998763 333333 33457889999999999999999999999432211 12223446
Q ss_pred ccCCeeEEEEcCCCCEEEEEcCCc-EEEEe
Q 010206 486 FSMKLLHLAWHPSENSIACAASNS-LYMYY 514 (515)
Q Consensus 486 ~~~~i~~~~~s~~~~~la~~~~~~-~~i~~ 514 (515)
|...|.+++|+||+++|++++.|+ +.+|+
T Consensus 325 h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 325 HENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 899999999999999999998665 88884
No 34
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.1e-39 Score=334.79 Aligned_cols=362 Identities=15% Similarity=0.168 Sum_probs=281.4
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.+.|++++|+|+|++||+|+.||.|+|||+.+++. ...+.+|.
T Consensus 9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~-----------------------~~~~~~~~---------- 55 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE-----------------------VRSIQVTE---------- 55 (814)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-----------------------EEEEECCS----------
T ss_pred eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCce-----------------------EEEEecCC----------
Confidence 457999999999999999999999999999999877653 35667787
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|++++|+| ++.+|++++.||.|++||+.+++.......+ .+.+. .++|+|+++.+
T Consensus 56 --~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~--------~~~v~-------~~~~s~~~~~l---- 112 (814)
T 3mkq_A 56 --TPVRAGKFIA--RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH--------PDYIR-------SIAVHPTKPYV---- 112 (814)
T ss_dssp --SCEEEEEEEG--GGTEEEEEETTSEEEEEETTTCCEEEEEECC--------SSCEE-------EEEECSSSSEE----
T ss_pred --CcEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEecC--------CCCEE-------EEEEeCCCCEE----
Confidence 8899999965 5679999999999999999998876655433 23344 88999999998
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC-CCCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
++++.++.+++|+ +... ......+.+|...|.+++|+| ++..|+++ .|+.|++||+......
T Consensus 113 --------~~~~~dg~i~vw~--~~~~------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~ 176 (814)
T 3mkq_A 113 --------LSGSDDLTVKLWN--WENN------WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176 (814)
T ss_dssp --------EEEETTSEEEEEE--GGGT------SEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCS
T ss_pred --------EEEcCCCEEEEEE--CCCC------ceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcce
Confidence 9999999999999 3321 111222468999999999999 88899998 8999999999876554
Q ss_pred cceecccCccccccCCceEEEEEec--CCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccccee
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHP--THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 346 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p--~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 346 (515)
..+ ...+...+.+++|+| ++ .+|++++.||.|++||+++++... .+.+|...|.
T Consensus 177 ~~~-------~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~----------------~~~~~~~~v~ 232 (814)
T 3mkq_A 177 FTL-------TTGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKSCVA----------------TLEGHMSNVS 232 (814)
T ss_dssp EEE-------ECCCTTCCCEEEECCSTTC-CEEEEECTTSEEEEEETTTTEEEE----------------EEECCSSCEE
T ss_pred eEE-------ecCCCCCEEEEEEEECCCC-CEEEEEeCCCEEEEEECCCCcEEE----------------EEcCCCCCEE
Confidence 321 123448899999999 87 899999999999999998876422 1455678899
Q ss_pred EEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCC--EEEEecCCCcE
Q 010206 347 DIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG--RVATGSYSNLF 423 (515)
Q Consensus 347 ~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~s~dg~i 423 (515)
+++|+|++++|++++. |.|++||+.+ ++.+..+..+... +++++|+|+++ ++++++ ++.+
T Consensus 233 ~~~~~~~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~~~~~---------------v~~~~~~~~~~~~~~~~~~-~~~~ 295 (814)
T 3mkq_A 233 FAVFHPTLPIIISGSEDGTLKIWNSST-YKVEKTLNVGLER---------------SWCIATHPTGRKNYIASGF-DNGF 295 (814)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTT-CSEEEEECCSSSS---------------EEEEEECTTCGGGEEEEEE-TTEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCC-CcEEEEeecCCCc---------------EEEEEEccCCCceEEEEEe-CCCE
Confidence 9999999999999875 9999999986 7777777666543 56899999987 455554 6668
Q ss_pred EEEecCCCCcce------------------------------------------eeeccCCCceeeEEECCCCCeeEeec
Q 010206 424 RVFGCSEGSAES------------------------------------------TTLEASKNPMRRQVQTPSRPSRPLGS 461 (515)
Q Consensus 424 ~iw~~~~~~~~~------------------------------------------~~~~~~~~~v~~~~~~~~~~~l~s~~ 461 (515)
.+|++....... ..+..+...+..++++|+++++++++
T Consensus 296 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~ 375 (814)
T 3mkq_A 296 TVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG 375 (814)
T ss_dssp EEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE
T ss_pred EEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec
Confidence 888876432110 11123455678999999999999998
Q ss_pred CCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCc-EEEEe
Q 010206 462 LSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS-LYMYY 514 (515)
Q Consensus 462 ~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~-~~i~~ 514 (515)
|+.+.+++... ....+.+.+.+++|+||+++||+++.++ +.+|.
T Consensus 376 -~~~~~i~~~~~--------~~~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~ 420 (814)
T 3mkq_A 376 -DGEYVIYTALA--------WRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYK 420 (814)
T ss_dssp -TTEEEEEETTT--------TEEEEEEECSEEEECTTSSCEEEECTTCCEEEEE
T ss_pred -CCEEEEEECcc--------ccccCCCceEEEEEeCCCCeEEEEeCCCcEEEEE
Confidence 88888833111 1112356788999999999999887655 77774
No 35
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.3e-39 Score=312.48 Aligned_cols=334 Identities=12% Similarity=0.176 Sum_probs=250.5
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccccee
Q 010206 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (515)
Q Consensus 36 ~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (515)
+.+++++|+|+|++|++|+.||.|++||+.+.+.. ..+..|. .+
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~-----------------------~~~~~~~-------------~~ 100 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGS-----------------------KMLKRAD-------------YT 100 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETT-----------------------TTSCSCC-------------EE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEeccccee-----------------------eEEecCC-------------ce
Confidence 44568999999999999999999999998766532 1223332 23
Q ss_pred EEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCC
Q 010206 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (515)
Q Consensus 116 ~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 195 (515)
....| ++++.+|++++.|+.|++||+.+++....
T Consensus 101 ~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------------------------------------------- 134 (420)
T 3vl1_A 101 AVDTA--KLQMRRFILGTTEGDIKVLDSNFNLQREI-------------------------------------------- 134 (420)
T ss_dssp EEEEE--CSSSCEEEEEETTSCEEEECTTSCEEEEE--------------------------------------------
T ss_pred EEEEE--ecCCCEEEEEECCCCEEEEeCCCcceeee--------------------------------------------
Confidence 44455 45677999999999999999886643221
Q ss_pred CCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecc
Q 010206 196 DSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 274 (515)
Q Consensus 196 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~ 274 (515)
+.+|...|.+++|+|++++|+++ .|+.|++||+++.+...
T Consensus 135 ----------------------------------~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~----- 175 (420)
T 3vl1_A 135 ----------------------------------DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR----- 175 (420)
T ss_dssp ----------------------------------TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCE-----
T ss_pred ----------------------------------cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCce-----
Confidence 24788999999999999999998 89999999998776543
Q ss_pred cCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCC------------Cccccccccc
Q 010206 275 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP------------GTRSFFTEII 342 (515)
Q Consensus 275 ~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ 342 (515)
.+.+|...|.+++|+|++ .+|++++.|+.|++||+++++... .+..+... ........+.
T Consensus 176 ---~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 247 (420)
T 3vl1_A 176 ---TLIGHRATVTDIAIIDRG-RNVLSASLDGTIRLWECGTGTTIH----TFNRKENPHDGVNSIALFVGTDRQLHEIST 247 (420)
T ss_dssp ---EEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEEE----EECBTTBTTCCEEEEEEEECCCSSCGGGCC
T ss_pred ---EEcCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEeECCCCceeE----EeecCCCCCCCccEEEEecCCcceeeeccc
Confidence 567899999999999998 899999999999999999876532 22211100 0011122345
Q ss_pred cceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEee-eccccccccccccCCCccceeeEEEcCCCC-EEEEecC
Q 010206 343 ASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSY 419 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~s~ 419 (515)
..+.+++|+|++++|++|+. |.|++||+++ ++.+..+.. |... +.+++|+|+++ +|++|+.
T Consensus 248 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~---------------v~~~~~~~~~~~~l~~g~~ 311 (420)
T 3vl1_A 248 SKKNNLEFGTYGKYVIAGHVSGVITVHNVFS-KEQTIQLPSKFTCS---------------CNSLTVDGNNANYIYAGYE 311 (420)
T ss_dssp CCCCTTCSSCTTEEEEEEETTSCEEEEETTT-CCEEEEECCTTSSC---------------EEEEEECSSCTTEEEEEET
T ss_pred CcccceEEcCCCCEEEEEcCCCeEEEEECCC-CceeEEcccccCCC---------------ceeEEEeCCCCCEEEEEeC
Confidence 67777888999999999875 9999999986 555554432 3322 56999999999 9999999
Q ss_pred CCcEEEEecCCCCcceeeecc-CCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCcc------ccCCccccccCCeeE
Q 010206 420 SNLFRVFGCSEGSAESTTLEA-SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSAL------DANGNAFDFSMKLLH 492 (515)
Q Consensus 420 dg~i~iw~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~------~~~~~~~~~~~~i~~ 492 (515)
||.|++||++++......+.. |..++..+.+ +++++|++++.|+.|++++-...... ........+...|.+
T Consensus 312 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 390 (420)
T 3vl1_A 312 NGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQ 390 (420)
T ss_dssp TSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCE
T ss_pred CCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEE
Confidence 999999999987665667776 6777877755 57889999999999999332221100 011123357789999
Q ss_pred EEEcCCCC----EEEEEcCCcEEEEeC
Q 010206 493 LAWHPSEN----SIACAASNSLYMYYA 515 (515)
Q Consensus 493 ~~~s~~~~----~la~~~~~~~~i~~~ 515 (515)
++|+|+++ +++++..+.+.+|+.
T Consensus 391 ~~~s~~~~~~g~l~a~g~~g~~~~~~~ 417 (420)
T 3vl1_A 391 FCYVSDDESNGEVLEVGKNNFCALYNL 417 (420)
T ss_dssp EEEECCSSSSCEEEEEETTTEEEEEES
T ss_pred EEEccCCCCcceEEEEcCCceEEEEec
Confidence 99999999 666777777888863
No 36
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.8e-39 Score=297.04 Aligned_cols=242 Identities=10% Similarity=0.097 Sum_probs=189.4
Q ss_pred cCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEE
Q 010206 232 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 310 (515)
Q Consensus 232 ~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~ 310 (515)
.+...|.+++|+|++. |++| .||+|++||+++++...... ..+.+|...|++++|+|++ ++|++|+.|+.|++
T Consensus 80 ~~~~~v~~~~~s~d~~-l~~~s~dg~v~lWd~~~~~~~~~~~----~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~i 153 (344)
T 4gqb_B 80 QTEAGVADLTWVGERG-ILVASDSGAVELWELDENETLIVSK----FCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKV 153 (344)
T ss_dssp EESSCEEEEEEETTTE-EEEEETTSEEEEEEECTTSSCEEEE----EEEECCSSCEEEEEECTTS-SEEEEEETTSCEEE
T ss_pred ccCCCEEEEEEeCCCe-EEEEECCCEEEEEeccCCCceeEee----ccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEE
Confidence 4567899999999975 5555 89999999998776543211 1346799999999999999 89999999999999
Q ss_pred EecCcccccccccceeeeccCCCccccccccccceeEEEEccCCC-EEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccc
Q 010206 311 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRP 388 (515)
Q Consensus 311 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~ 388 (515)
||+++++... .+.+|...|.+++|+|++. +|++++. ++|++||+++ +++...+..+....
T Consensus 154 wd~~~~~~~~----------------~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~~~- 215 (344)
T 4gqb_B 154 WDLAQQVVLS----------------SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC-PKPASQIGCSAPGY- 215 (344)
T ss_dssp EETTTTEEEE----------------EECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS-SSCEEECC----CC-
T ss_pred EECCCCcEEE----------------EEcCcCCceEEEEecCCCCCceeeeccccccccccccc-cceeeeeecceeec-
Confidence 9999876532 2567889999999999875 6777764 9999999986 77766664332211
Q ss_pred cccccccCCCccceeeEEEcCC-CCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCC-CeeEeecCCCeE
Q 010206 389 KLCDLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR-PSRPLGSLSGVV 466 (515)
Q Consensus 389 ~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v 466 (515)
.+.+++|+|+ +++|++|+.||.|++||++++ ..+.++.+|...|++++|+|++ ++|++|+.|++|
T Consensus 216 ------------~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~-~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i 282 (344)
T 4gqb_B 216 ------------LPTSLAWHPQQSEVFVFGDENGTVSLVDTKST-SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSL 282 (344)
T ss_dssp ------------CEEEEEECSSCTTEEEEEETTSEEEEEESCC---CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCE
T ss_pred ------------cceeeeecCCCCcceEEeccCCcEEEEECCCC-cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeE
Confidence 1458999985 578999999999999999987 4557899999999999999998 579999999999
Q ss_pred EEecCCCCCccccCCccccccCCeeEEEEcCCCCE-EEEEc-CCcEEEEe
Q 010206 467 RRVKGADNSALDANGNAFDFSMKLLHLAWHPSENS-IACAA-SNSLYMYY 514 (515)
Q Consensus 467 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-la~~~-~~~~~i~~ 514 (515)
++++.... ++ ....+|...|++++|+|+++. |++++ +..+++|.
T Consensus 283 ~vwd~~~~---~~-~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 283 AVLDSSLS---EL-FRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV 328 (344)
T ss_dssp EEECTTCC---EE-EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEEECCCC---cE-EEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence 99432211 11 234578999999999999875 56666 55688886
No 37
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.1e-38 Score=295.08 Aligned_cols=302 Identities=14% Similarity=0.185 Sum_probs=230.6
Q ss_pred ccccccceEEEEECCC-CCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 31 EVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~-g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
..+|.+.|++|+|+|+ +++||||+.||+|+|||+.+.+.. .......+.+|.
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~------------------~~~~~~~l~~h~--------- 86 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN------------------YGIPQRALRGHS--------- 86 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC------------------SEEEEEEECCCS---------
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc------------------cceeeEEEeCCC---------
Confidence 4589999999999997 689999999999999999876532 122445678888
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..|.+++| ++++.+|++++.|+.|++|+............... .+. ...+++++..+
T Consensus 87 ---~~V~~~~~--s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~--------~~~-------~~~~~~~~~~l--- 143 (340)
T 4aow_A 87 ---HFVSDVVI--SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTK--------DVL-------SVAFSSDNRQI--- 143 (340)
T ss_dssp ---SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS--------CEE-------EEEECTTSSCE---
T ss_pred ---CCEEEEEE--CCCCCEEEEEcccccceEEeecccceeeeecCCCC--------cee-------EEEEeecCccc---
Confidence 88999999 56788999999999999999998876655543321 111 55677888877
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCC--CEEEEe-CCCcEEEEeCCCCC
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--ETFISA-DDLRINLWNLEISN 266 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~-~d~~i~iwd~~~~~ 266 (515)
++++.|+.+++|| .... ........+|...+..++|++++ .+++++ .|+.|++||+++.+
T Consensus 144 ---------~s~s~d~~~~~~d--~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~ 206 (340)
T 4aow_A 144 ---------VSGSRDKTIKLWN--TLGV------CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK 206 (340)
T ss_dssp ---------EEEETTSCEEEEC--TTSC------EEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE
T ss_pred ---------eeecCCCeEEEEE--eCCC------ceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc
Confidence 9999999999999 3321 11222246889999999998764 466777 89999999998765
Q ss_pred cccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccccee
Q 010206 267 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 346 (515)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 346 (515)
... .+.+|...|++++|+|++ ++|++|+.|+.|++||+++.+... .+. +...|.
T Consensus 207 ~~~--------~~~~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~~----~~~-------------~~~~v~ 260 (340)
T 4aow_A 207 LKT--------NHIGHTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEGKHLY----TLD-------------GGDIIN 260 (340)
T ss_dssp EEE--------EECCCSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEEE----EEE-------------CSSCEE
T ss_pred eee--------EecCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEeccCceee----eec-------------CCceEE
Confidence 442 557799999999999998 899999999999999998876432 222 225799
Q ss_pred EEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEE
Q 010206 347 DIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 426 (515)
Q Consensus 347 ~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw 426 (515)
++.|+|++.+++++.++.|++||++. ...+..+..+.... ........|++++|+|||++|++|+.||.|+||
T Consensus 261 ~~~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~------~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW 333 (340)
T 4aow_A 261 ALCFSPNRYWLCAATGPSIKIWDLEG-KIIVDELKQEVIST------SSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 333 (340)
T ss_dssp EEEECSSSSEEEEEETTEEEEEETTT-TEEEEEECCC-------------CCCCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeecCCCCceeeccCCCEEEEEECCC-CeEEEeccccceee------eccCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 99999999888888889999999985 55554443321110 001112236799999999999999999999999
Q ss_pred ecCCCC
Q 010206 427 GCSEGS 432 (515)
Q Consensus 427 ~~~~~~ 432 (515)
|+++|+
T Consensus 334 ~~~tGt 339 (340)
T 4aow_A 334 QVTIGT 339 (340)
T ss_dssp EEEC--
T ss_pred eCCCcC
Confidence 999874
No 38
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.5e-38 Score=288.96 Aligned_cols=294 Identities=20% Similarity=0.319 Sum_probs=235.4
Q ss_pred CCccceeeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCC
Q 010206 86 RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNG 165 (515)
Q Consensus 86 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 165 (515)
..|.+.....+.+|. ..|++++|+ +++++|++++.|+.|++|++.+++....
T Consensus 9 ~~~~~~~~~~~~gh~------------~~v~~~~~s--~~~~~l~s~~~dg~i~iw~~~~~~~~~~-------------- 60 (312)
T 4ery_A 9 VKPNYALKFTLAGHT------------KAVSSVKFS--PNGEWLASSSADKLIKIWGAYDGKFEKT-------------- 60 (312)
T ss_dssp CCCCCEEEEEECCCS------------SCEEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEE--------------
T ss_pred CCCCceeEEEEcccC------------CcEEEEEEC--CCCCEEEEeeCCCeEEEEeCCCcccchh--------------
Confidence 456777788899998 889999995 5677999999999999999877653221
Q ss_pred CccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC
Q 010206 166 PIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD 245 (515)
Q Consensus 166 ~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 245 (515)
+.+|...|.+++|+|+
T Consensus 61 ----------------------------------------------------------------~~~h~~~v~~~~~~~~ 76 (312)
T 4ery_A 61 ----------------------------------------------------------------ISGHKLGISDVAWSSD 76 (312)
T ss_dssp ----------------------------------------------------------------ECCCSSCEEEEEECTT
T ss_pred ----------------------------------------------------------------hccCCCceEEEEEcCC
Confidence 3467789999999999
Q ss_pred CCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccc
Q 010206 246 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK 324 (515)
Q Consensus 246 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 324 (515)
+++|+++ .|+.|++||+++.+... .+.+|...|.+++|+|++ .+|++|+.|+.|++||+++++...
T Consensus 77 ~~~l~s~~~d~~i~vwd~~~~~~~~--------~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~---- 143 (312)
T 4ery_A 77 SNLLVSASDDKTLKIWDVSSGKCLK--------TLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLK---- 143 (312)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEE--------EEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEE----
T ss_pred CCEEEEECCCCEEEEEECCCCcEEE--------EEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEEEE----
Confidence 9999998 89999999998766442 557799999999999998 899999999999999998875421
Q ss_pred eeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCcccee
Q 010206 325 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF 403 (515)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 403 (515)
.+..|..+|.+++|+|++++|++++. +.|++||+++ ++.+..+..+... .+.
T Consensus 144 ------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~--------------~~~ 196 (312)
T 4ery_A 144 ------------TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNP--------------PVS 196 (312)
T ss_dssp ------------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECCSSCC--------------CEE
T ss_pred ------------EecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeeEEeccCCC--------------ceE
Confidence 14556688999999999999999875 9999999986 6665555332211 145
Q ss_pred eEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceee---EEECCCCCeeEeecCCCeEEEecCCCCCccccC
Q 010206 404 ECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRR---QVQTPSRPSRPLGSLSGVVRRVKGADNSALDAN 480 (515)
Q Consensus 404 ~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~---~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~ 480 (515)
.++|+|++++|++++.||.|++||+.++ .....+.+|...... ....+++.+|++|+.||.|++++- ...+..
T Consensus 197 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~---~~~~~~ 272 (312)
T 4ery_A 197 FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL---QTKEIV 272 (312)
T ss_dssp EEEECTTSSEEEEEETTTEEEEEETTTT-EEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEET---TTCCEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCC-cEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEEC---CCchhh
Confidence 8999999999999999999999999987 445677777665433 234578899999999999999332 222233
Q ss_pred CccccccCCeeEEEEcCCCCEEEEEc---CCcEEEEeC
Q 010206 481 GNAFDFSMKLLHLAWHPSENSIACAA---SNSLYMYYA 515 (515)
Q Consensus 481 ~~~~~~~~~i~~~~~s~~~~~la~~~---~~~~~i~~~ 515 (515)
....+|...|.+++|+|++++|++++ +..+.+|..
T Consensus 273 ~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 273 QKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp EEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred hhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 34456889999999999999999885 556999974
No 39
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-38 Score=331.16 Aligned_cols=424 Identities=12% Similarity=0.043 Sum_probs=263.4
Q ss_pred cccchhhhhcccccccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceee-
Q 010206 15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK- 93 (515)
Q Consensus 15 ~~w~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 93 (515)
..|++... .......|.+.|++++|+|++++|++|+.||.|++||+.+++.. .+. . +.....
T Consensus 82 ~lWd~~~~----~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-----~~~--i------~~~~~~~ 144 (902)
T 2oaj_A 82 YVLSLYSQ----KVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-----SFK--L------DNLQKSS 144 (902)
T ss_dssp EEEETTTC----SEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-----EEE--E------CCHHHHH
T ss_pred EEEECCCC----cEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-----cce--e------ccccccc
Confidence 45776531 11223357789999999999999999999999999999876531 000 0 000000
Q ss_pred eecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccC----------CC
Q 010206 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKA----------AG 163 (515)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----------~~ 163 (515)
..+.+|. ..|++++|+|. ++..+++++.|+.| +||+++++.......+..+... ..
T Consensus 145 ~~~~~h~------------~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h 210 (902)
T 2oaj_A 145 FFPAARL------------SPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKR 210 (902)
T ss_dssp TCSSSCC------------CCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCB
T ss_pred cccccCC------------CCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCccccccccccc
Confidence 2245666 88999999763 23589999999999 9999998876655443111000 00
Q ss_pred CCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeec-----------c
Q 010206 164 NGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAH-----------A 232 (515)
Q Consensus 164 ~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~-----------~ 232 (515)
.+.+. +++|+|+|+.+ ++++.|+.|++|| +...+............. .
T Consensus 211 ~~~V~-------~v~fspdg~~l------------asgs~Dg~i~lWd--~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~ 269 (902)
T 2oaj_A 211 TPKVI-------QSLYHPNSLHI------------ITIHEDNSLVFWD--ANSGHMIMARTVFETEINVPQPDYIRDSST 269 (902)
T ss_dssp CCCEE-------EEEECTTSSEE------------EEEETTCCEEEEE--TTTCCEEEEECSSCSCTTSCCTTCCCCCSS
T ss_pred CCCeE-------EEEEcCCCCEE------------EEEECCCeEEEEE--CCCCcEEEEEeecccccCCCCCcCCCCCcc
Confidence 12343 89999999998 9999999999999 433221100000000000 1
Q ss_pred CcCCeEEEEec----CCC-CEEEEe-------------------------------------------------------
Q 010206 233 HDYHINSISNN----SDG-ETFISA------------------------------------------------------- 252 (515)
Q Consensus 233 ~~~~v~~~~~~----~~~-~~l~s~------------------------------------------------------- 252 (515)
|...|.+++|+ |++ .+|++|
T Consensus 270 ~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 349 (902)
T 2oaj_A 270 NAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNIL 349 (902)
T ss_dssp CCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEE
T ss_pred ccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEE
Confidence 23346666663 222 233333
Q ss_pred ----------------------CCCcEEEEeCCCCCccccee---------------------------------cccCc
Q 010206 253 ----------------------DDLRINLWNLEISNQSFNIV---------------------------------DVKPA 277 (515)
Q Consensus 253 ----------------------~d~~i~iwd~~~~~~~~~~~---------------------------------~~~~~ 277 (515)
.|+.|++||+.++....... .....
T Consensus 350 ~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~ 429 (902)
T 2oaj_A 350 PIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDY 429 (902)
T ss_dssp ECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCC
T ss_pred ECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCC
Confidence 33444444443221110000 00001
Q ss_pred cccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEE
Q 010206 278 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI 357 (515)
Q Consensus 278 ~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 357 (515)
.+.+|...+.+++|+|++ ++|++|+.|++|++||+.++.... ...+...- .+....+|...|.+++|+|++++|
T Consensus 430 ~l~G~~~~v~sv~~spdg-~~laSgs~DgtVrlWd~~~g~~~~--~~~~~~~l---~~~~~~~h~~~V~svafspdg~~L 503 (902)
T 2oaj_A 430 LLKGGVRTKRQKLPAEYG-TAFITGHSNGSVRIYDASHGDIQD--NASFEVNL---SRTLNKAKELAVDKISFAAETLEL 503 (902)
T ss_dssp SCCCSBCCCCCCCCCSEE-EEEEEEETTSEEEEEESSCCTTTT--TBCEEEEH---HHHTTCSSSCCEEEEEEETTTTEE
T ss_pred cccCCcCCCCcccccccC-cEEEEecCCCcEEEEECCCccccC--CceEEeec---hhhcCCCCCCceeEEEecCCCCeE
Confidence 123344444555667888 899999999999999998874311 11111100 000012677899999999999999
Q ss_pred EEEcC-CeEEEEEeeCCCCC---------------------------------------------eeeEeeecccccccc
Q 010206 358 LSRDY-MTLKLWDINMDSGP---------------------------------------------VATFQVHEHLRPKLC 391 (515)
Q Consensus 358 ~s~~~-~~i~iwd~~~~~~~---------------------------------------------~~~~~~~~~~~~~~~ 391 (515)
|+|+. ++|+|||+.. ++. +..+.+|..
T Consensus 504 Asgs~DgtV~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~------ 576 (902)
T 2oaj_A 504 AVSIETGDVVLFKYEV-NQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKG------ 576 (902)
T ss_dssp EEEETTSCEEEEEEEE-CCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSC------
T ss_pred EEEecCcEEEEEEecC-ccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCC------
Confidence 99875 9999999985 321 222333332
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcce----eeec-cCCCceeeEEEC-----CCC---CeeE
Q 010206 392 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES----TTLE-ASKNPMRRQVQT-----PSR---PSRP 458 (515)
Q Consensus 392 ~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~----~~~~-~~~~~v~~~~~~-----~~~---~~l~ 458 (515)
.|++++||||| +||+|+.|++|++||+++...+. ..+. +|...|++++|+ ||| ++|+
T Consensus 577 ---------~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~ 646 (902)
T 2oaj_A 577 ---------KTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMV 646 (902)
T ss_dssp ---------SEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEE
T ss_pred ---------cEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEE
Confidence 36799999999 99999999999999998653221 2343 899999999999 885 8999
Q ss_pred eecCCCeEEEecC-----CCCCccccCCc-cccccCCeeEEE-Ec----------------------CCCCEEEEEcCCc
Q 010206 459 LGSLSGVVRRVKG-----ADNSALDANGN-AFDFSMKLLHLA-WH----------------------PSENSIACAASNS 509 (515)
Q Consensus 459 s~~~d~~v~l~~~-----~~~~~~~~~~~-~~~~~~~i~~~~-~s----------------------~~~~~la~~~~~~ 509 (515)
+|+.|++|++++- ++.. ..+... ...+.+.|.+++ |+ +++..|+++ ++.
T Consensus 647 sgs~D~tv~~wd~~p~~~g~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~-~~~ 724 (902)
T 2oaj_A 647 CGTDMGEVITYKILPASGGKFD-VQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG-FDD 724 (902)
T ss_dssp EEETTSEEEEEEEEECGGGCEE-EEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC-SSE
T ss_pred EEecCCcEEEEEEecCCCCcEE-EEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe-ccc
Confidence 9999999999321 1110 011110 112346777777 76 455555554 788
Q ss_pred EEEEeC
Q 010206 510 LYMYYA 515 (515)
Q Consensus 510 ~~i~~~ 515 (515)
+.||+.
T Consensus 725 ir~~~~ 730 (902)
T 2oaj_A 725 IRLITL 730 (902)
T ss_dssp EEEECT
T ss_pred eEEEeC
Confidence 999963
No 40
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.4e-38 Score=289.35 Aligned_cols=295 Identities=16% Similarity=0.216 Sum_probs=228.1
Q ss_pred cceeeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCcc
Q 010206 89 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF 168 (515)
Q Consensus 89 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 168 (515)
.+.+..++.+|. +.|++++|+|. ++.+|++++.|++|++|++.......
T Consensus 6 ~~~l~~~l~gH~------------~~V~~l~~~~~-~~~~l~s~s~D~~v~~W~~~~~~~~~------------------ 54 (319)
T 3frx_A 6 VLVLRGTLEGHN------------GWVTSLATSAG-QPNLLLSASRDKTLISWKLTGDDQKF------------------ 54 (319)
T ss_dssp EEEEEEEECCCS------------SCEEEEEECSS-CTTEEEEEETTSEEEEEEEEEETTEE------------------
T ss_pred EEEEEEEEcccc------------ceEEEEEccCC-CccEEEEecCCccEEEecCCCCCccc------------------
Confidence 344667789998 89999999653 23699999999999999986432110
Q ss_pred CCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCE
Q 010206 169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET 248 (515)
Q Consensus 169 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 248 (515)
..+... +.+|...|.+++|+|++++
T Consensus 55 ------------------------------------------------------~~~~~~-~~~h~~~v~~~~~s~dg~~ 79 (319)
T 3frx_A 55 ------------------------------------------------------GVPVRS-FKGHSHIVQDCTLTADGAY 79 (319)
T ss_dssp ------------------------------------------------------EEEEEE-EECCSSCEEEEEECTTSSE
T ss_pred ------------------------------------------------------cccceE-EeCCcccEEEEEECCCCCE
Confidence 001111 4689999999999999999
Q ss_pred EEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceee
Q 010206 249 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 327 (515)
Q Consensus 249 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 327 (515)
|+++ .|++|++||+++++... .+.+|...|.+++|+|++ .+|++|+.|+.|++||++....
T Consensus 80 l~s~s~D~~v~~wd~~~~~~~~--------~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~~~~--------- 141 (319)
T 3frx_A 80 ALSASWDKTLRLWDVATGETYQ--------RFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKGQCL--------- 141 (319)
T ss_dssp EEEEETTSEEEEEETTTTEEEE--------EEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTSCEE---------
T ss_pred EEEEeCCCEEEEEECCCCCeeE--------EEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeE---------
Confidence 9998 89999999998776442 567899999999999998 8999999999999999965321
Q ss_pred eccCCCccccccccccceeEEEEccC------CCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCcc
Q 010206 328 EQEAPGTRSFFTEIIASISDIKFARN------GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIF 400 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~s~~------~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (515)
..+.+|...|.++.|+|. +..+++++. +.|++||+.. .+....+.+|...
T Consensus 142 --------~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~h~~~-------------- 198 (319)
T 3frx_A 142 --------ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ-FQIEADFIGHNSN-------------- 198 (319)
T ss_dssp --------EEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT-TEEEEEECCCCSC--------------
T ss_pred --------EEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc-chhheeecCCCCc--------------
Confidence 124567789999999985 447888765 9999999986 6677777777655
Q ss_pred ceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE--ecCCCCCc--
Q 010206 401 DKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR--VKGADNSA-- 476 (515)
Q Consensus 401 ~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l--~~~~~~~~-- 476 (515)
|.+++|+|++++|++|+.||.|++||+.++ .....+.. ..++.+++|+|++.++++++.++ +++ ++......
T Consensus 199 -v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~-~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~ 274 (319)
T 3frx_A 199 -INTLTASPDGTLIASAGKDGEIMLWNLAAK-KAMYTLSA-QDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDL 274 (319)
T ss_dssp -EEEEEECTTSSEEEEEETTCEEEEEETTTT-EEEEEEEC-CSCEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEEEE
T ss_pred -EEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEecC-CCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeecc
Confidence 569999999999999999999999999987 44456654 46899999999999999988665 565 22111110
Q ss_pred -cccCCccccccCCeeEEEEcCCCCEEEEEcCCc-EEEEe
Q 010206 477 -LDANGNAFDFSMKLLHLAWHPSENSIACAASNS-LYMYY 514 (515)
Q Consensus 477 -~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~-~~i~~ 514 (515)
.........+...+.+++|+|||++|++++.|+ +.+|+
T Consensus 275 ~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 275 RPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp CCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence 011111223567899999999999999888665 88996
No 41
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.2e-38 Score=294.50 Aligned_cols=325 Identities=12% Similarity=0.131 Sum_probs=252.4
Q ss_pred ccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccc
Q 010206 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (515)
.|.++|.+++|+|||++++++..++.+.+|...... ......+|.
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~h~------------ 51 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHA-----------------------RQINTLNHG------------ 51 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEE-----------------------EEEEEECCS------------
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccCCcc-----------------------ccceeccCC------------
Confidence 466789999999999999998877766555433221 112233566
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|++++|+ ++++++++++ |+.|++||+.+++.....
T Consensus 52 ~~v~~~~~~--~~~~~l~~~~-dg~i~iw~~~~~~~~~~~---------------------------------------- 88 (337)
T 1gxr_A 52 EVVCAVTIS--NPTRHVYTGG-KGCVKVWDISHPGNKSPV---------------------------------------- 88 (337)
T ss_dssp SCCCEEEEC--SSSSEEEEEC-BSEEEEEETTSTTCCSCS----------------------------------------
T ss_pred CceEEEEEe--cCCcEEEEcC-CCeEEEEECCCCCceeee----------------------------------------
Confidence 889999995 5677898888 999999999875411100
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
. .....+|...|.+++|+|++++|+++ .|+.|++||+++.+....
T Consensus 89 ---------------~------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~- 134 (337)
T 1gxr_A 89 ---------------S------------------QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK- 134 (337)
T ss_dssp ---------------E------------------EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEE-
T ss_pred ---------------e------------------cccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCccee-
Confidence 0 00013677899999999999999998 899999999987653221
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
..+..|...|.+++|+|++ ++|++++.|+.|++||+++++... .+..|...|.+++|+
T Consensus 135 -----~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~~~----------------~~~~~~~~i~~~~~~ 192 (337)
T 1gxr_A 135 -----AELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVR----------------QFQGHTDGASCIDIS 192 (337)
T ss_dssp -----EEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEE----------------EECCCSSCEEEEEEC
T ss_pred -----eecccCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCceee----------------eeecccCceEEEEEC
Confidence 1456788999999999998 899999999999999998875422 144566889999999
Q ss_pred cCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCC
Q 010206 352 RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 352 ~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~ 430 (515)
|++++|++++. +.|++||+++ ++.+..+. +... +.+++|+|++++|++++.|+.|++||+.+
T Consensus 193 ~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~-~~~~---------------v~~~~~s~~~~~l~~~~~~~~i~~~~~~~ 255 (337)
T 1gxr_A 193 NDGTKLWTGGLDNTVRSWDLRE-GRQLQQHD-FTSQ---------------IFSLGYCPTGEWLAVGMESSNVEVLHVNK 255 (337)
T ss_dssp TTSSEEEEEETTSEEEEEETTT-TEEEEEEE-CSSC---------------EEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred CCCCEEEEEecCCcEEEEECCC-CceEeeec-CCCc---------------eEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence 99999999875 9999999986 55555543 2221 45899999999999999999999999997
Q ss_pred CCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCc-
Q 010206 431 GSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS- 509 (515)
Q Consensus 431 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~- 509 (515)
+. ...+..|..++..++++|++++|++++.||.+++++-.... .. ....+...|.+++|+|++++|++++.++
T Consensus 256 ~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~---~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 329 (337)
T 1gxr_A 256 PD--KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA---SI-FQSKESSSVLSCDISVDDKYIVTGSGDKK 329 (337)
T ss_dssp SC--EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---EE-EEEECSSCEEEEEECTTSCEEEEEETTSC
T ss_pred CC--eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCe---EE-EEecCCCcEEEEEECCCCCEEEEecCCCe
Confidence 63 35778999999999999999999999999999994322211 11 2234678999999999999999888665
Q ss_pred EEEEe
Q 010206 510 LYMYY 514 (515)
Q Consensus 510 ~~i~~ 514 (515)
+.+|+
T Consensus 330 i~iw~ 334 (337)
T 1gxr_A 330 ATVYE 334 (337)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88886
No 42
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.6e-38 Score=304.20 Aligned_cols=294 Identities=11% Similarity=0.118 Sum_probs=224.0
Q ss_pred cccccceEEEEECC-CCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 32 VQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 32 ~~h~~~v~~v~~s~-~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
.+|.+.|+||+|+| ++++||+|+.||.|+|||+.+++.. ....+.+|.
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~---------------------~~~~~~gH~---------- 164 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP---------------------TFIKGIGAG---------- 164 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC---------------------EEECCCSSS----------
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce---------------------eEEEccCCC----------
Confidence 46888999999999 5679999999999999999766532 334566787
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
+.|++|+|+|. ++.+|++++.|++|++||++++........
T Consensus 165 --~~V~~l~f~p~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~------------------------------------ 205 (435)
T 4e54_B 165 --GSITGLKFNPL-NTNQFYASSMEGTTRLQDFKGNILRVFASS------------------------------------ 205 (435)
T ss_dssp --CCCCEEEECSS-CTTEEEEECSSSCEEEEETTSCEEEEEECC------------------------------------
T ss_pred --CCEEEEEEeCC-CCCEEEEEeCCCEEEEeeccCCceeEEecc------------------------------------
Confidence 88999999653 457999999999999999986543222110
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
..+...+.+++|+|++++|++| .|+.|++||++.. ..
T Consensus 206 ----------------------------------------~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~- 243 (435)
T 4e54_B 206 ----------------------------------------DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-EL- 243 (435)
T ss_dssp ----------------------------------------SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BC-
T ss_pred ----------------------------------------CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-ee-
Confidence 1233457789999999999999 8999999998743 22
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
..+.+|...|.+++|+|++..+|++|+.|+.|++||+++.+.... .....+|..+|++++
T Consensus 244 -------~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~-------------~~~~~~h~~~v~~~~ 303 (435)
T 4e54_B 244 -------WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKAS-------------FLYSLPHRHPVNAAC 303 (435)
T ss_dssp -------CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSC-------------CSBCCBCSSCEEECC
T ss_pred -------EEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccce-------------EEEeeecccccccee
Confidence 256789999999999999867899999999999999988653221 111356788999999
Q ss_pred EccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEec----------
Q 010206 350 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS---------- 418 (515)
Q Consensus 350 ~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s---------- 418 (515)
|+|+|++|++++. +.|+|||+.. +.....+..|........ .+..+.|+|++.++++++
T Consensus 304 ~spdg~~l~s~~~D~~i~iwd~~~-~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 373 (435)
T 4e54_B 304 FSPDGARLLTTDQKSEIRVYSASQ-WDCPLGLIPHPHRHFQHL---------TPIKAAWHPRYNLIVVGRYPDPNFKSCT 373 (435)
T ss_dssp BCTTSSEEEEEESSSCEEEEESSS-SSSEEEECCCCCCCCSSS---------CCCBCEECSSSSCEEEECCCCTTSCCSS
T ss_pred ECCCCCeeEEEcCCCEEEEEECCC-CccceEEecccccccccc---------eeEEEEEcCCCCEEEEEEcCCCCeEEEE
Confidence 9999999999875 9999999986 666666665543211100 012445666655555443
Q ss_pred --CCCcEEEEecCCCCcceeeeccCCCceeeE-EECCCCCeeEeecCCCeEEE
Q 010206 419 --YSNLFRVFGCSEGSAESTTLEASKNPMRRQ-VQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 419 --~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~s~~~d~~v~l 468 (515)
.++.|++||..++..+.....+|...|.++ +|+|++++|++|+ |+.|++
T Consensus 374 ~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~i 425 (435)
T 4e54_B 374 PYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILI 425 (435)
T ss_dssp TTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEE
T ss_pred ecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEE
Confidence 346799999998855444456788889887 6999999999987 788999
No 43
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-39 Score=311.54 Aligned_cols=338 Identities=9% Similarity=0.033 Sum_probs=231.5
Q ss_pred cccccceEEEEECCCC---------CeEEe-------------------ecCCCeEEEEEcccCcccCccccCccccccc
Q 010206 32 VQEVDIISAIEFDKSG---------DHLAT-------------------GDRGGRVVLFERTDTRDNGGQRRDLEMMDYS 83 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g---------~~las-------------------g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~ 83 (515)
..+.+.|.+++|+|++ ++||+ ++.|++|+||++.+++..
T Consensus 130 ~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~------------- 196 (524)
T 2j04_B 130 YNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLH------------- 196 (524)
T ss_dssp EECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCC-------------
T ss_pred EECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCC-------------
Confidence 3456778888888876 56665 557889999998765521
Q ss_pred ccCCccceeeeecccCCCcccccccccccceeEEEEEeec----CCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcc
Q 010206 84 MSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQS----ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPE 159 (515)
Q Consensus 84 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~----~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 159 (515)
......+.+|. +.|.+++|+|. +++.+|++++.||+|++||+..++........
T Consensus 197 ------~~~~~~l~~~~------------~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~---- 254 (524)
T 2j04_B 197 ------CVKVQTIVHSF------------GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM---- 254 (524)
T ss_dssp ------EEEEEEEEECC------------CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC----
T ss_pred ------ceEEEEEEecC------------CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee----
Confidence 01112345555 77999999875 34579999999999999999765311000000
Q ss_pred cCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEE
Q 010206 160 KAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINS 239 (515)
Q Consensus 160 ~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 239 (515)
+ ..+... +.+|...|.+
T Consensus 255 ------------------------------------------------------~--------~~p~~~-l~~h~~~v~s 271 (524)
T 2j04_B 255 ------------------------------------------------------C--------EKPSLT-LSLADSLITT 271 (524)
T ss_dssp ------------------------------------------------------C--------CSCSEE-ECCTTTCEEE
T ss_pred ------------------------------------------------------e--------cCceEE-EEcCCCCEEE
Confidence 0 000011 3678899999
Q ss_pred EEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEE--EEecCCCcEEEEEecCCeEEEEecCcc
Q 010206 240 ISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSA--EFHPTHCNMLAYSSSKGSIRLIDMRQS 316 (515)
Q Consensus 240 ~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i--~~~p~~~~~l~~~~~dg~i~~wd~~~~ 316 (515)
++|++++ .|++| .||+|++||++++..... .+.+|...|.++ +|+|++.++|++|+.|++|+|||++++
T Consensus 272 v~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~-------~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~ 343 (524)
T 2j04_B 272 FDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSF-------YDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI 343 (524)
T ss_dssp EEESSSS-EEEEEETTSEEEEEETTBCSSCSE-------EEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH
T ss_pred EEecCCC-eEEEEeCCCEEEEEECCCCCCceE-------EeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC
Confidence 9999865 78888 899999999986643321 457899999999 567764368999999999999999987
Q ss_pred cccccccceeeeccCCCccccccccc--cceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccccccccc
Q 010206 317 ALCDTHSKLFEEQEAPGTRSFFTEII--ASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDL 393 (515)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 393 (515)
+... . +.+|. ..|.+++|+|+++.++++++ ++|++||++. +.++.++.+|...
T Consensus 344 ~~~~----~------------~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~-~~~~~~l~gH~~~------- 399 (524)
T 2j04_B 344 ATTK----T------------TVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA-AFAVHPLVSRETT------- 399 (524)
T ss_dssp HHHC----E------------EEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTC-TTCCEEEEECSSC-------
T ss_pred Cccc----c------------cccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcc-cccceeeecCCCc-------
Confidence 6432 1 22232 24789999999999998765 9999999986 7777888888765
Q ss_pred ccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeecc-----CCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 394 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA-----SKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 394 ~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
|++++|+|+|++|++|+.||+|++||+..+ ....++. +...+..++++|++..+.. ..+..+..
T Consensus 400 --------V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~--~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~~~~~~~~ 468 (524)
T 2j04_B 400 --------ITAIGVSRLHPMVLAGSADGSLIITNAARR--LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI-DSSYEVYP 468 (524)
T ss_dssp --------EEEEECCSSCCBCEEEETTTEEECCBSCSS--TTTCC------CCCCEEEECBCCSSSCEEEE-CCCCCCCC
T ss_pred --------eEEEEeCCCCCeEEEEECCCEEEEEechHh--hccccccCccceeeeEEEEeccCCCCCeEEc-cCCceecc
Confidence 669999999999999999999999998743 2222221 1225678999999885532 11111111
Q ss_pred ecCCCCCccccCCccccccCCeeEEEEcCCCC---EEEEEcCCc-EEEEe
Q 010206 469 VKGADNSALDANGNAFDFSMKLLHLAWHPSEN---SIACAASNS-LYMYY 514 (515)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~---~la~~~~~~-~~i~~ 514 (515)
.+ . .........+|...|.+++|+|+++ .||+|+.+| +.||.
T Consensus 469 ~~---~-~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~ 514 (524)
T 2j04_B 469 LT---V-NDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY 514 (524)
T ss_dssp -----------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred cc---c-CCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence 00 0 0112223456889999999999965 999999865 88886
No 44
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-37 Score=286.67 Aligned_cols=301 Identities=16% Similarity=0.180 Sum_probs=216.9
Q ss_pred eeeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCC
Q 010206 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (515)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (515)
+....+.+|. +.|.+++|+| + +|++++.|++|++||+..+......
T Consensus 5 ~~~~~~~~h~------------~~v~~~~~s~--~--~las~~~D~~i~lw~~~~~~~~~~~------------------ 50 (330)
T 2hes_X 5 NLIKSLKLYK------------EKIWSFDFSQ--G--ILATGSTDRKIKLVSVKYDDFTLID------------------ 50 (330)
T ss_dssp EEEEEEECCS------------SCEEEEEEET--T--EEEEEESSSCEEEEECSSSCCEEEE------------------
T ss_pred ccceeeccCC------------CceeeeccCC--C--EEEEEcCCCEEEEEEecCCCeEEEE------------------
Confidence 3556788888 8899999953 3 8999999999999998764311110
Q ss_pred CCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeee-eccCcCCeEEEEecCCCCEE
Q 010206 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIY-AHAHDYHINSISNNSDGETF 249 (515)
Q Consensus 171 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l 249 (515)
.+ ..+|...|.+++|+|++++|
T Consensus 51 ---------------------------------------------------------~~~~~~h~~~v~~v~~sp~~~~l 73 (330)
T 2hes_X 51 ---------------------------------------------------------VLDETAHKKAIRSVAWRPHTSLL 73 (330)
T ss_dssp ---------------------------------------------------------EECTTCCCSCEEEEEECTTSSEE
T ss_pred ---------------------------------------------------------EEecCCccCCEEEEEECCCCCEE
Confidence 00 12488999999999999999
Q ss_pred EEe-CCCcEEEEeCCCCCcc---cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccce
Q 010206 250 ISA-DDLRINLWNLEISNQS---FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL 325 (515)
Q Consensus 250 ~s~-~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 325 (515)
+++ .|++|++||++..... .... ..+.+|...|.+++|+|++ ++|++|+.|+.|++||++......+.
T Consensus 74 as~s~D~~v~iw~~~~~~~~~~~~~~~----~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~--- 145 (330)
T 2hes_X 74 AAGSFDSTVSIWAKEESADRTFEMDLL----AIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEYEC--- 145 (330)
T ss_dssp EEEETTSCEEEEEC-------CCCEEE----EEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEE---
T ss_pred EEEeCCCcEEEEEcccCcCccccceeE----EEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEE---
Confidence 998 8999999998643210 0100 2567899999999999998 89999999999999999543211010
Q ss_pred eeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCC-CCCeeeEeeeccccccccccccCCCcccee
Q 010206 326 FEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMD-SGPVATFQVHEHLRPKLCDLYENDSIFDKF 403 (515)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 403 (515)
...+.+|...|.+++|+|++++|++++. ++|++||.... .+++..+.+|... |+
T Consensus 146 ---------~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~---------------v~ 201 (330)
T 2hes_X 146 ---------ISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGT---------------VW 201 (330)
T ss_dssp ---------EEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC---------------EE
T ss_pred ---------EEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCc---------------EE
Confidence 1125667889999999999999999875 99999999852 1466777777655 56
Q ss_pred eEEEcCC--CCEEEEecCCCcEEEEecCCCC-------cceeeecc-CCCceeeEEECCCCCeeEeecCCCeEEEecCCC
Q 010206 404 ECCLSGD--GGRVATGSYSNLFRVFGCSEGS-------AESTTLEA-SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGAD 473 (515)
Q Consensus 404 ~~~~s~~--~~~l~s~s~dg~i~iw~~~~~~-------~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~ 473 (515)
+++|+|+ +.+|++|+.|++|++||+..+. .....+.. |..+|.+++|++++ +|++++.||.|++++...
T Consensus 202 ~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~ 280 (330)
T 2hes_X 202 SSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVD 280 (330)
T ss_dssp EEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEET
T ss_pred EEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCC
Confidence 9999998 7799999999999999997542 11234444 89999999999665 899999999999933211
Q ss_pred CCccccCCccccccC-CeeEEEEcC--CCCEEEEEcCCc-EEEEeC
Q 010206 474 NSALDANGNAFDFSM-KLLHLAWHP--SENSIACAASNS-LYMYYA 515 (515)
Q Consensus 474 ~~~~~~~~~~~~~~~-~i~~~~~s~--~~~~la~~~~~~-~~i~~~ 515 (515)
............|.. .|.+++|+| ++++||+++.|+ +.+|+.
T Consensus 281 ~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 281 GEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp TEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred CceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence 000001111234665 899999999 789999888665 888863
No 45
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.9e-37 Score=286.29 Aligned_cols=301 Identities=14% Similarity=0.195 Sum_probs=226.0
Q ss_pred cceeeeecccCCCcccccccccccceeEEEEEee----cCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCC
Q 010206 89 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQ----SANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGN 164 (515)
Q Consensus 89 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~----~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 164 (515)
.+.....+.+|. ..|++++|.+ .+++.+|++|+.|++|++||+.+.+.....
T Consensus 10 ~~~~~~~l~gH~------------~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~------------ 65 (343)
T 2xzm_R 10 QVVKRGILEGHS------------DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYF------------ 65 (343)
T ss_dssp EEEEEEEEECCS------------SCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBS------------
T ss_pred Eeeeeeeeccch------------hhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccccc------------
Confidence 344566788998 8899999932 136779999999999999998764310000
Q ss_pred CCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC
Q 010206 165 GPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS 244 (515)
Q Consensus 165 ~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 244 (515)
..+... +.+|...|.+++|+|
T Consensus 66 ----------------------------------------------------------~~~~~~-l~~h~~~V~~~~~~~ 86 (343)
T 2xzm_R 66 ----------------------------------------------------------GIPHKA-LTGHNHFVSDLALSQ 86 (343)
T ss_dssp ----------------------------------------------------------EEEEEE-ECCCSSCEEEEEECS
T ss_pred ----------------------------------------------------------ccccch-hccCCCceEEEEECC
Confidence 001111 468999999999999
Q ss_pred CCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCccccccccc
Q 010206 245 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS 323 (515)
Q Consensus 245 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 323 (515)
++.+|+++ .|++|++||+++++... .+.+|...|.+++|+|++ ++|++++.|+.|++||+......
T Consensus 87 ~~~~l~s~s~D~~v~lwd~~~~~~~~--------~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~~~---- 153 (343)
T 2xzm_R 87 ENCFAISSSWDKTLRLWDLRTGTTYK--------RFVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGECKF---- 153 (343)
T ss_dssp STTEEEEEETTSEEEEEETTSSCEEE--------EEECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCEEE----
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEE--------EEcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCcee----
Confidence 99999998 89999999998776442 567899999999999998 89999999999999999743211
Q ss_pred ceeeeccCCCccccccccccceeEEEEccCC----------CEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccc
Q 010206 324 KLFEEQEAPGTRSFFTEIIASISDIKFARNG----------RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD 392 (515)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~----------~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 392 (515)
.. ....+|...|.+++|+|++ .+|++++. +.|++||.. .+....+.+|...
T Consensus 154 -~~---------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~------ 215 (343)
T 2xzm_R 154 -SS---------AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESN------ 215 (343)
T ss_dssp -EC---------CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--TEEEEEEECCSSC------
T ss_pred -ee---------ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--CceeEEEcCcccc------
Confidence 00 0123577889999999987 68888765 999999943 5666677777654
Q ss_pred cccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCC
Q 010206 393 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGA 472 (515)
Q Consensus 393 ~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~ 472 (515)
|.+++|+|+|++|++|+.||.|++||+.........+ .+...+.+++|+|++++++++ .|+.+++++..
T Consensus 216 ---------v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~ 284 (343)
T 2xzm_R 216 ---------VNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLM 284 (343)
T ss_dssp ---------EEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESS
T ss_pred ---------ceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeC
Confidence 5699999999999999999999999996543443333 345679999999999888755 57788983321
Q ss_pred --CCCc-cccCC-------ccccccCCeeEEEEcCCCCEEEEEcCCc-EEEEe
Q 010206 473 --DNSA-LDANG-------NAFDFSMKLLHLAWHPSENSIACAASNS-LYMYY 514 (515)
Q Consensus 473 --~~~~-~~~~~-------~~~~~~~~i~~~~~s~~~~~la~~~~~~-~~i~~ 514 (515)
+... ..+.. ...+|...|.+++|+|++++|++|+.|+ +.+|+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 285 TQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFS 337 (343)
T ss_dssp SCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEE
T ss_pred CCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEE
Confidence 1110 00110 0125678899999999999999988666 77886
No 46
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.4e-37 Score=314.19 Aligned_cols=307 Identities=15% Similarity=0.227 Sum_probs=233.2
Q ss_pred ccccccceEEEEECCCC-CeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 31 EVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g-~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
..+|.+.|++++|+|++ ++|++|+.||.|+||++.+.... .......+.+|.
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~------------------~~~~~~~~~~h~--------- 430 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA------------------YGVAQRRLTGHS--------- 430 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC------------------SCEEEEEEECCS---------
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc------------------cccccceecCCC---------
Confidence 45899999999999864 79999999999999998765421 112335577888
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..|.+++| ++++++|++++.|++|++||+.+++.......+ .+.|. +++|+|+++.+
T Consensus 431 ---~~v~~v~~--s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h--------~~~v~-------~~~~s~~~~~l--- 487 (694)
T 3dm0_A 431 ---HFVEDVVL--SSDGQFALSGSWDGELRLWDLAAGVSTRRFVGH--------TKDVL-------SVAFSLDNRQI--- 487 (694)
T ss_dssp ---SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECC--------SSCEE-------EEEECTTSSCE---
T ss_pred ---CcEEEEEE--CCCCCEEEEEeCCCcEEEEECCCCcceeEEeCC--------CCCEE-------EEEEeCCCCEE---
Confidence 88999999 456789999999999999999998766655433 23444 88999999998
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCC--CEEEEe-CCCcEEEEeCCCCC
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--ETFISA-DDLRINLWNLEISN 266 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~-~d~~i~iwd~~~~~ 266 (515)
++++.|+.|++|| ...... . .......+|...|.+++|+|++ ..|+++ .|++|++||+++.+
T Consensus 488 ---------~s~s~D~~i~iwd--~~~~~~---~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~ 552 (694)
T 3dm0_A 488 ---------VSASRDRTIKLWN--TLGECK---Y-TISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK 552 (694)
T ss_dssp ---------EEEETTSCEEEEC--TTSCEE---E-EECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC
T ss_pred ---------EEEeCCCEEEEEE--CCCCcc---e-eeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc
Confidence 9999999999999 322111 0 0011125788999999999986 578887 89999999998665
Q ss_pred cccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccccee
Q 010206 267 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 346 (515)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 346 (515)
... .+.+|...|++++|+|++ ++|++|+.||.|++||+++++.... +. +...|.
T Consensus 553 ~~~--------~~~~h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~~~~~----~~-------------~~~~v~ 606 (694)
T 3dm0_A 553 LRS--------TLAGHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAEGKKLYS----LE-------------ANSVIH 606 (694)
T ss_dssp EEE--------EECCCSSCEEEEEECTTS-SEEEEEETTSBCEEEETTTTEEEEC----CB-------------CSSCEE
T ss_pred EEE--------EEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceEEE----ec-------------CCCcEE
Confidence 432 567899999999999998 8999999999999999998865321 11 225799
Q ss_pred EEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccc----cccCCCccceeeEEEcCCCCEEEEecCCCc
Q 010206 347 DIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCD----LYENDSIFDKFECCLSGDGGRVATGSYSNL 422 (515)
Q Consensus 347 ~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~ 422 (515)
+++|+|++.+|++++++.|++||+.+ +..+..+..+......... .........+++++|+|+|++|++|+.||.
T Consensus 607 ~~~~sp~~~~l~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~ 685 (694)
T 3dm0_A 607 ALCFSPNRYWLCAATEHGIKIWDLES-KSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV 685 (694)
T ss_dssp EEEECSSSSEEEEEETTEEEEEETTT-TEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEcCCCcEEEEEcCCCEEEEECCC-CCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe
Confidence 99999999999999888899999986 6666665543221100000 000111223568999999999999999999
Q ss_pred EEEEecC
Q 010206 423 FRVFGCS 429 (515)
Q Consensus 423 i~iw~~~ 429 (515)
|++|++.
T Consensus 686 i~iW~i~ 692 (694)
T 3dm0_A 686 IRVWGIG 692 (694)
T ss_dssp EEEEEC-
T ss_pred EEEEecc
Confidence 9999986
No 47
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-36 Score=283.18 Aligned_cols=288 Identities=14% Similarity=0.198 Sum_probs=236.5
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
...+|.+.|++++|+|+|++|++|+.||.|+|||+.+++ ....+.+|.
T Consensus 27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-----------------------~~~~~~~h~--------- 74 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE-----------------------RLGTLDGHT--------- 74 (369)
T ss_dssp EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC-----------------------EEEEECCCS---------
T ss_pred EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch-----------------------hhhhhhhcC---------
Confidence 356899999999999999999999999999999988765 335677787
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..|.+++|+ +++++|++++.|+.|++||+.+++.....
T Consensus 75 ---~~v~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------------------------------------- 112 (369)
T 3zwl_B 75 ---GTIWSIDVD--CFTKYCVTGSADYSIKLWDVSNGQCVATW------------------------------------- 112 (369)
T ss_dssp ---SCEEEEEEC--TTSSEEEEEETTTEEEEEETTTCCEEEEE-------------------------------------
T ss_pred ---CcEEEEEEc--CCCCEEEEEeCCCeEEEEECCCCcEEEEe-------------------------------------
Confidence 889999995 56779999999999999999876533321
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CC-----CcEEEEeCC
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD-----LRINLWNLE 263 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d-----~~i~iwd~~ 263 (515)
.+...|.+++|+|++++|+++ .+ +.|++||+.
T Consensus 113 ------------------------------------------~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~ 150 (369)
T 3zwl_B 113 ------------------------------------------KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIE 150 (369)
T ss_dssp ------------------------------------------ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEE
T ss_pred ------------------------------------------ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEec
Confidence 144678999999999999998 77 999999998
Q ss_pred CCCcccceeccc---CccccccCC--ceEEEEEecCCCcEEEEEecCCeEEEEecCcc-cccccccceeeeccCCCcccc
Q 010206 264 ISNQSFNIVDVK---PANMEDLTE--VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS-ALCDTHSKLFEEQEAPGTRSF 337 (515)
Q Consensus 264 ~~~~~~~~~~~~---~~~~~~~~~--~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~ 337 (515)
.......+.... ...+..|.. .+.+++|+|++ ++|++++.||.|++||+++. ... . .
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~----~------------~ 213 (369)
T 3zwl_B 151 RDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYEYV----D------------S 213 (369)
T ss_dssp ECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTTTEEE----E------------E
T ss_pred CCccceeecccccceeeeccCCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcEeE----E------------E
Confidence 765433222111 123344555 89999999998 89999999999999999873 321 1 1
Q ss_pred ccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEE
Q 010206 338 FTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT 416 (515)
Q Consensus 338 ~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 416 (515)
+..|...|.+++|+|++++|++++. +.|++||+.+ .+.+..+. +... +..++|+|+++++++
T Consensus 214 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~-~~~~---------------~~~~~~~~~~~~l~~ 276 (369)
T 3zwl_B 214 IDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST-LQVLKKYE-TDCP---------------LNTAVITPLKEFIIL 276 (369)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEE-CSSC---------------EEEEEECSSSSEEEE
T ss_pred EecCCCceeEEEECCCCCEEEEecCCceEEEEECCC-Cceeeeec-CCCC---------------ceeEEecCCCceEEE
Confidence 4456688999999999999999875 9999999986 77776665 2222 458999999999999
Q ss_pred ecCCC--------------cEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 417 GSYSN--------------LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 417 ~s~dg--------------~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
++.++ .+++||+.++ .....+.+|...+..++|+|++++|++++.||.|++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i 341 (369)
T 3zwl_B 277 GGGQEAKDVTTTSANEGKFEARFYHKIFE-EEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRL 341 (369)
T ss_dssp EECCC-------------CEEEEEETTTC-CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred eecCCCceEEEEecCCCcceeEEEecCCC-cchhheecccCcEEEEEECCCCCEEEEEcCCCeEEE
Confidence 99888 8999999987 455788999999999999999999999999999999
No 48
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=7.4e-37 Score=308.38 Aligned_cols=385 Identities=13% Similarity=0.106 Sum_probs=262.9
Q ss_pred cccccccc-eEEEEECC--CCCeEEeecCCCeEEEEEcccCccc----CccccCc---ccccccccCCccceeeeecccC
Q 010206 30 EEVQEVDI-ISAIEFDK--SGDHLATGDRGGRVVLFERTDTRDN----GGQRRDL---EMMDYSMSRHPEFRYKTEFQSH 99 (515)
Q Consensus 30 ~~~~h~~~-v~~v~~s~--~g~~lasg~~dg~v~vw~~~~~~~~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~h 99 (515)
...+|.+. |++++|+| ++++||+|+.||.|+|||+.+++.. ......+ ......+.|+|+.+++......
T Consensus 58 ~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 137 (615)
T 1pgu_A 58 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG 137 (615)
T ss_dssp EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC
T ss_pred EEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccC
Confidence 34579999 99999999 9999999999999999999755110 0111111 2223456777776554432211
Q ss_pred CC------ccc---cccc-ccccceeEEEEEeecCCCc-EEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCcc
Q 010206 100 EP------EFD---YLKS-LEIEEKINKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF 168 (515)
Q Consensus 100 ~~------~~~---~~~~-~~~~~~v~~l~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 168 (515)
.. .++ .+.. ..+...|.+++|+| ++. .+++++.|+.|++||+.+++.......+... ...+.
T Consensus 138 ~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~-----~~~v~ 210 (615)
T 1pgu_A 138 RDNFGVFISWDSGNSLGEVSGHSQRINACHLKQ--SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ-----GSFVR 210 (615)
T ss_dssp SSCSEEEEETTTCCEEEECCSCSSCEEEEEECS--SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCT-----TCCEE
T ss_pred CCCccEEEEEECCCcceeeecCCccEEEEEECC--CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCC-----CceEE
Confidence 00 000 0001 13458899999954 455 7999999999999999988776655433110 00344
Q ss_pred CCCCcCCCceeecC-CCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeec---cCcCCeEEEEecC
Q 010206 169 GSHVSAIPKSYMAN-GGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAH---AHDYHINSISNNS 244 (515)
Q Consensus 169 ~~~~~~~~~~~~~~-g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~ 244 (515)
.++|+|+ ++.+ ++++.++.|++|| +... +....+.. .|...|.+++|+
T Consensus 211 -------~~~~~~~~~~~l------------~~~~~dg~i~vwd--~~~~------~~~~~~~~~~~~~~~~v~~~~~~- 262 (615)
T 1pgu_A 211 -------DVEFSPDSGEFV------------ITVGSDRKISCFD--GKSG------EFLKYIEDDQEPVQGGIFALSWL- 262 (615)
T ss_dssp -------EEEECSTTCCEE------------EEEETTCCEEEEE--TTTC------CEEEECCBTTBCCCSCEEEEEES-
T ss_pred -------EEEECCCCCCEE------------EEEeCCCeEEEEE--CCCC------CEeEEecccccccCCceEEEEEc-
Confidence 7899999 9988 9999999999999 4332 23333224 899999999999
Q ss_pred CCCEEEEe-CCCcEEEEeCCCCCcccceecc---------------------------------cCccc----cccC---
Q 010206 245 DGETFISA-DDLRINLWNLEISNQSFNIVDV---------------------------------KPANM----EDLT--- 283 (515)
Q Consensus 245 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~---------------------------------~~~~~----~~~~--- 283 (515)
++++|+++ .|+.|++||+++.+....+... ..... .+|.
T Consensus 263 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v 342 (615)
T 1pgu_A 263 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGI 342 (615)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCE
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCE
Confidence 99999998 8999999999876543221100 00000 0122
Q ss_pred ------------------------------CceEEEEEecCCCcEEEEEecCCeEEEEecCccccc--------------
Q 010206 284 ------------------------------EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC-------------- 319 (515)
Q Consensus 284 ------------------------------~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~-------------- 319 (515)
..|.+++| +++ ..|++++.|+.|++||+++++..
T Consensus 343 ~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~-~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~ 420 (615)
T 1pgu_A 343 TALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKA-QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFT 420 (615)
T ss_dssp EEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CST-TCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEE
T ss_pred EEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCC-cEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCE
Confidence 23333333 223 45555666666666655432210
Q ss_pred ---------------------------------------------ccccceeeeccCCCccccccccccceeEEEEccCC
Q 010206 320 ---------------------------------------------DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 354 (515)
Q Consensus 320 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 354 (515)
...++.++..........+.+|...|.+++|+|++
T Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 500 (615)
T 1pgu_A 421 AVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE 500 (615)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTS
T ss_pred EEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCC
Confidence 00001111000000003456788999999999999
Q ss_pred CEEEEEcC-CeEEEEEeeCCCCCeeeEee-eccccccccccccCCCccceeeEEEcC----------CCCEEEEecCCCc
Q 010206 355 RHILSRDY-MTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFDKFECCLSG----------DGGRVATGSYSNL 422 (515)
Q Consensus 355 ~~l~s~~~-~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~----------~~~~l~s~s~dg~ 422 (515)
++|++++. +.|++||+.+ ++.+..+.+ |... |++++|+| ++++|++++.||.
T Consensus 501 ~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~h~~~---------------v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~ 564 (615)
T 1pgu_A 501 TYIAAGDVMGKILLYDLQS-REVKTSRWAFRTSK---------------INAISWKPAEKGANEEEIEEDLVATGSLDTN 564 (615)
T ss_dssp SEEEEEETTSCEEEEETTT-TEEEECCSCCCSSC---------------EEEEEECCCC------CCSCCEEEEEETTSC
T ss_pred CEEEEcCCCCeEEEeeCCC-CcceeEeecCCCCc---------------eeEEEEcCccccccccccCCCEEEEEcCCCc
Confidence 99999875 9999999986 777666665 5543 56999999 9999999999999
Q ss_pred EEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 423 FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 423 i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
|++||+.++......+.+|..+|.+++|+|+++ |++++.|+.|++
T Consensus 565 i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~i 609 (615)
T 1pgu_A 565 IFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKR 609 (615)
T ss_dssp EEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEE
T ss_pred EEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEE
Confidence 999999987566688999999999999999999 999999999998
No 49
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=8e-37 Score=278.00 Aligned_cols=258 Identities=13% Similarity=0.226 Sum_probs=199.9
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.+.|++++|+|+|++||+|+.|+.|+||++.+... +....+.+|.
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~---------------------~~~~~l~gH~---------- 53 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH---------------------KLIDTLTGHE---------- 53 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB---------------------CCCEEECCCS----------
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc---------------------EEEEEEcccc----------
Confidence 457999999999999999999999999999999865321 1345678898
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
+.|++++|++..++.+|++++.|++|++||+.+++....
T Consensus 54 --~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~--------------------------------------- 92 (297)
T 2pm7_B 54 --GPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQI--------------------------------------- 92 (297)
T ss_dssp --SCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCC---------------------------------------
T ss_pred --CCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEE---------------------------------------
Confidence 889999997644567999999999999999876531110
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC--CCEEEEe-CCCcEEEEeCCCCCc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
.. +.+|...|.+++|+|+ +.+|+++ .|++|++||++....
T Consensus 93 ------------------------------------~~-~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~ 135 (297)
T 2pm7_B 93 ------------------------------------AV-HAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT 135 (297)
T ss_dssp ------------------------------------EE-ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC
T ss_pred ------------------------------------EE-eecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc
Confidence 00 2468889999999997 8899998 899999999986542
Q ss_pred ccceecccCccccccCCceEEEEEecCC------------CcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcc
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTH------------CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 335 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~------------~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 335 (515)
... ..+.+|...|.+++|+|++ .++|++|+.|+.|++||++++...... .
T Consensus 136 ~~~------~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~------------~ 197 (297)
T 2pm7_B 136 TSP------IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL------------E 197 (297)
T ss_dssp BCC------EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEE------------E
T ss_pred eee------eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEE------------E
Confidence 211 1457799999999999972 268999999999999999875421100 1
Q ss_pred ccccccccceeEEEEccCC---CEEEEEcC-CeEEEEEeeCCCCCe--eeE--eeeccccccccccccCCCccceeeEEE
Q 010206 336 SFFTEIIASISDIKFARNG---RHILSRDY-MTLKLWDINMDSGPV--ATF--QVHEHLRPKLCDLYENDSIFDKFECCL 407 (515)
Q Consensus 336 ~~~~~~~~~i~~~~~s~~~---~~l~s~~~-~~i~iwd~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~ 407 (515)
..+.+|...|.+++|+|++ ++|++++. ++|++||+....... ..+ ..|.. .|++++|
T Consensus 198 ~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~---------------~v~~~~~ 262 (297)
T 2pm7_B 198 STLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD---------------VLWRASW 262 (297)
T ss_dssp EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSS---------------CEEEEEE
T ss_pred EEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCC---------------cEEEEEE
Confidence 1256788999999999984 78999875 999999998522211 111 11211 2569999
Q ss_pred cCCCCEEEEecCCCcEEEEecCC
Q 010206 408 SGDGGRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 408 s~~~~~l~s~s~dg~i~iw~~~~ 430 (515)
+|+|++|++++.||.|++|+...
T Consensus 263 s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 263 SLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp CSSSCCEEEEETTSCEEEEEECT
T ss_pred CCCCCEEEEEcCCCcEEEEEECC
Confidence 99999999999999999999864
No 50
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5.4e-36 Score=278.42 Aligned_cols=285 Identities=11% Similarity=0.172 Sum_probs=229.4
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
...+|.+.|++++|+|++++|++++ ||.|++|++.+++..... ......+|.
T Consensus 46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~------------------~~~~~~~~~--------- 97 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPV------------------SQLDCLNRD--------- 97 (337)
T ss_dssp EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCS------------------EEEECSCTT---------
T ss_pred eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeee------------------ecccccCCC---------
Confidence 3458999999999999999999999 999999999876532000 111122555
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..|.+++|+ +++++|++++.|+.|++||+.+++......
T Consensus 98 ---~~v~~~~~~--~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~------------------------------------ 136 (337)
T 1gxr_A 98 ---NYIRSCKLL--PDGCTLIVGGEASTLSIWDLAAPTPRIKAE------------------------------------ 136 (337)
T ss_dssp ---SBEEEEEEC--TTSSEEEEEESSSEEEEEECCCC--EEEEE------------------------------------
T ss_pred ---CcEEEEEEc--CCCCEEEEEcCCCcEEEEECCCCCcceeee------------------------------------
Confidence 789999995 567799999999999999998764211110
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
+..|...|.+++|+|++++|+++ .|+.|++||+++.+..
T Consensus 137 ----------------------------------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~ 176 (337)
T 1gxr_A 137 ----------------------------------------LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLV 176 (337)
T ss_dssp ----------------------------------------EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred ----------------------------------------cccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCcee
Confidence 24677889999999999999998 8999999999876543
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
. .+..|...|.+++|+|++ ..|++++.|+.|++||+++++.... ..+...+.++
T Consensus 177 ~--------~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~-----------------~~~~~~v~~~ 230 (337)
T 1gxr_A 177 R--------QFQGHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQLQQ-----------------HDFTSQIFSL 230 (337)
T ss_dssp E--------EECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEE-----------------EECSSCEEEE
T ss_pred e--------eeecccCceEEEEECCCC-CEEEEEecCCcEEEEECCCCceEee-----------------ecCCCceEEE
Confidence 2 456789999999999998 8999999999999999998764321 1234679999
Q ss_pred EEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 349 KFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 349 ~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
+|+|+++++++++. +.|++||+.. .+ ...+..|... +.+++|+|++++|++++.||.|++||
T Consensus 231 ~~s~~~~~l~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~---------------v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 231 GYCPTGEWLAVGMESSNVEVLHVNK-PD-KYQLHLHESC---------------VLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTS-SC-EEEECCCSSC---------------EEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EECCCCCEEEEEcCCCcEEEEECCC-CC-eEEEcCCccc---------------eeEEEECCCCCEEEEecCCCcEEEEE
Confidence 99999999999875 9999999985 33 3344444433 56999999999999999999999999
Q ss_pred cCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 428 CSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+.+++.. ....|..++.+++++|++++|++++.||.+++
T Consensus 294 ~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 332 (337)
T 1gxr_A 294 TPYGASI--FQSKESSSVLSCDISVDDKYIVTGSGDKKATV 332 (337)
T ss_dssp TTTCCEE--EEEECSSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred CCCCeEE--EEecCCCcEEEEEECCCCCEEEEecCCCeEEE
Confidence 9987433 34568889999999999999999999999998
No 51
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.4e-36 Score=284.88 Aligned_cols=303 Identities=14% Similarity=0.165 Sum_probs=234.3
Q ss_pred ccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccc
Q 010206 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (515)
.|.++|++++|+|+|++||+|+.||.|++|++.+++. .....+.+|.
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~---------------------~~~~~~~~h~------------ 52 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW---------------------VQVHELKEHN------------ 52 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE---------------------EEEEEEECCS------------
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE---------------------EeeeeecCCC------------
Confidence 4889999999999999999999999999999876641 1345677787
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|++++|+| ++.+|++++.|+.|++||+.+++......
T Consensus 53 ~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------------------------------------- 91 (372)
T 1k8k_C 53 GQVTGVDWAP--DSNRIVTCGTDRNAYVWTLKGRTWKPTLV--------------------------------------- 91 (372)
T ss_dssp SCEEEEEEET--TTTEEEEEETTSCEEEEEEETTEEEEEEE---------------------------------------
T ss_pred CcccEEEEeC--CCCEEEEEcCCCeEEEEECCCCeeeeeEE---------------------------------------
Confidence 8899999965 67799999999999999998775332211
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
...|...|.+++|+|++++|+++ .|+.|++||++........
T Consensus 92 -------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~ 134 (372)
T 1k8k_C 92 -------------------------------------ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC 134 (372)
T ss_dssp -------------------------------------CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE
T ss_pred -------------------------------------eecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceee
Confidence 23567889999999999999998 8999999999876532111
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccc-eeee-ccCCCccccccccccceeEEE
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK-LFEE-QEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~i~~~~ 349 (515)
. .....|...|.+++|+|++ .+|++++.|+.|++||++.......... .+.. .........+.+|...|.+++
T Consensus 135 ~----~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 209 (372)
T 1k8k_C 135 K----HIKKPIRSTVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVC 209 (372)
T ss_dssp E----EECTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEE
T ss_pred e----eeecccCCCeeEEEEcCCC-CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEE
Confidence 1 1235688999999999998 8999999999999999864322110000 0000 000111223456788999999
Q ss_pred EccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEec
Q 010206 350 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 428 (515)
Q Consensus 350 ~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~ 428 (515)
|+|++++|++++. +.|++||+++ ++++..+..|... +.+++|+|++++|++| .|+.|++|++
T Consensus 210 ~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~---------------v~~~~~~~~~~~l~~~-~d~~i~i~~~ 272 (372)
T 1k8k_C 210 FSANGSRVAWVSHDSTVCLADADK-KMAVATLASETLP---------------LLAVTFITESSLVAAG-HDCFPVLFTY 272 (372)
T ss_dssp ECSSSSEEEEEETTTEEEEEEGGG-TTEEEEEECSSCC---------------EEEEEEEETTEEEEEE-TTSSCEEEEE
T ss_pred ECCCCCEEEEEeCCCEEEEEECCC-CceeEEEccCCCC---------------eEEEEEecCCCEEEEE-eCCeEEEEEc
Confidence 9999999999875 9999999996 7888888777544 5599999999999888 8999999999
Q ss_pred CC--CCc-------------------------------ce------eee-ccCCCceeeEEEC-CCC---CeeEeecCCC
Q 010206 429 SE--GSA-------------------------------ES------TTL-EASKNPMRRQVQT-PSR---PSRPLGSLSG 464 (515)
Q Consensus 429 ~~--~~~-------------------------------~~------~~~-~~~~~~v~~~~~~-~~~---~~l~s~~~d~ 464 (515)
.+ +.. .. ..+ .+|..+|+++++. +++ .+|++|+.||
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg 352 (372)
T 1k8k_C 273 DSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDG 352 (372)
T ss_dssp ETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTS
T ss_pred cCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCC
Confidence 87 310 00 223 4899999999865 676 9999999999
Q ss_pred eEEE
Q 010206 465 VVRR 468 (515)
Q Consensus 465 ~v~l 468 (515)
.|++
T Consensus 353 ~i~~ 356 (372)
T 1k8k_C 353 GMSI 356 (372)
T ss_dssp EEEE
T ss_pred ceEE
Confidence 9999
No 52
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.2e-36 Score=317.05 Aligned_cols=381 Identities=14% Similarity=0.157 Sum_probs=281.3
Q ss_pred cccchhhhhcccccccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeee
Q 010206 15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKT 94 (515)
Q Consensus 15 ~~w~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (515)
..|++... .......+|..+|++++|+|+|++||+|+.||.|+||++.+++. ..
T Consensus 38 ~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~-----------------------~~ 91 (814)
T 3mkq_A 38 EIWNYETQ---VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK-----------------------VV 91 (814)
T ss_dssp EEEETTTT---EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE-----------------------EE
T ss_pred EEEECCCC---ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-----------------------EE
Confidence 45776541 11223347999999999999999999999999999999987763 35
Q ss_pred ecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCC-eeEEEeeccCCcccCCCCCCccCCCCc
Q 010206 95 EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGSHVS 173 (515)
Q Consensus 95 ~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (515)
.+.+|. ..|++++|+ +++.+|++++.|++|++||+.++ ........+ .+.+.
T Consensus 92 ~~~~~~------------~~v~~~~~s--~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~--------~~~v~----- 144 (814)
T 3mkq_A 92 DFEAHP------------DYIRSIAVH--PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGH--------EHFVM----- 144 (814)
T ss_dssp EEECCS------------SCEEEEEEC--SSSSEEEEEETTSEEEEEEGGGTSEEEEEEECC--------SSCEE-----
T ss_pred EEecCC------------CCEEEEEEe--CCCCEEEEEcCCCEEEEEECCCCceEEEEEcCC--------CCcEE-----
Confidence 567787 889999995 56779999999999999999987 444443322 23333
Q ss_pred CCCceeec-CCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC--CCCEEE
Q 010206 174 AIPKSYMA-NGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFI 250 (515)
Q Consensus 174 ~~~~~~~~-~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~ 250 (515)
.++|+| ++..+ ++++.++.|++|| +.... ........+...+.+++|+| ++.+|+
T Consensus 145 --~~~~~p~~~~~l------------~~~~~dg~v~vwd--~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 202 (814)
T 3mkq_A 145 --CVAFNPKDPSTF------------ASGCLDRTVKVWS--LGQST------PNFTLTTGQERGVNYVDYYPLPDKPYMI 202 (814)
T ss_dssp --EEEEETTEEEEE------------EEEETTSEEEEEE--TTCSS------CSEEEECCCTTCCCEEEECCSTTCCEEE
T ss_pred --EEEEEcCCCCEE------------EEEeCCCeEEEEE--CCCCc------ceeEEecCCCCCEEEEEEEECCCCCEEE
Confidence 789999 88888 9999999999999 43322 22232345558899999999 999999
Q ss_pred Ee-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeec
Q 010206 251 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 329 (515)
Q Consensus 251 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 329 (515)
++ .|+.|++||+.+++... .+.+|...|.+++|+|++ .+|++++.||.|++||+.+++... .
T Consensus 203 ~~~~dg~i~~~d~~~~~~~~--------~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~~~~----~---- 265 (814)
T 3mkq_A 203 TASDDLTIKIWDYQTKSCVA--------TLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYKVEK----T---- 265 (814)
T ss_dssp EECTTSEEEEEETTTTEEEE--------EEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCSEEE----E----
T ss_pred EEeCCCEEEEEECCCCcEEE--------EEcCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEE----E----
Confidence 98 89999999998765432 556789999999999999 899999999999999998875432 1
Q ss_pred cCCCccccccccccceeEEEEccCCC--EEEEEcCCeEEEEEeeCCCCCeeeEeeecccc------cc-----------c
Q 010206 330 EAPGTRSFFTEIIASISDIKFARNGR--HILSRDYMTLKLWDINMDSGPVATFQVHEHLR------PK-----------L 390 (515)
Q Consensus 330 ~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~------~~-----------~ 390 (515)
+..|...+.+++|+|+++ +++++.++.+.+|++.. ..+...+....... .. .
T Consensus 266 --------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 336 (814)
T 3mkq_A 266 --------LNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN-DEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGN 336 (814)
T ss_dssp --------ECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSC-CSCCEEECSSSEEEEECCTTSCTTCEEEEECCSC
T ss_pred --------eecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC-CCceeEECCCCCEEEECcccccceeeeeeecccc
Confidence 344557899999999987 57778888899999875 33322221100000 00 0
Q ss_pred cccc-----------cCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEe
Q 010206 391 CDLY-----------ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPL 459 (515)
Q Consensus 391 ~~~~-----------~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 459 (515)
.... ....-..+.+++|+|+|++|++++ |+.+.+|++.... ..+..++..++|+|+++++++
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~------~~~~~~i~~~~~spdg~~la~ 409 (814)
T 3mkq_A 337 EEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWR------NKAFGKCQDFVWGPDSNSYAL 409 (814)
T ss_dssp CCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTE------EEEEEECSEEEECTTSSCEEE
T ss_pred cccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcccc------ccCCCceEEEEEeCCCCeEEE
Confidence 0000 001111356899999999999988 8999999986431 123457889999999999999
Q ss_pred ecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCC---CEEEE-EcCCcEEEEe
Q 010206 460 GSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSE---NSIAC-AASNSLYMYY 514 (515)
Q Consensus 460 ~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~---~~la~-~~~~~~~i~~ 514 (515)
++.++.+++++ ...+|...+.+++|+|++ .+|++ +.++.+.+|+
T Consensus 410 ~~~~g~v~l~~-----------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d 457 (814)
T 3mkq_A 410 IDETGQIKYYK-----------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFD 457 (814)
T ss_dssp ECTTCCEEEEE-----------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEEC
T ss_pred EeCCCcEEEEE-----------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEE
Confidence 99999999932 112356788999999998 45555 5566688886
No 53
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4e-36 Score=284.50 Aligned_cols=301 Identities=13% Similarity=0.163 Sum_probs=228.6
Q ss_pred ccccccceEEEEECCCC-CeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 31 EVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g-~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
..+|.+.|++++|+|++ ++||+|+.||.|+|||+.+++.. ......+|.
T Consensus 69 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---------------------~~~~~~~h~--------- 118 (383)
T 3ei3_B 69 ASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT---------------------SFIQGMGPG--------- 118 (383)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE---------------------EEECCCSTT---------
T ss_pred ccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc---------------------eeeecCCcC---------
Confidence 35799999999999999 99999999999999999876532 222234676
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..|.+++|+|. ++.+|++++.|+.|++||+.+........
T Consensus 119 ---~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------------------------------------ 158 (383)
T 3ei3_B 119 ---DAITGMKFNQF-NTNQLFVSSIRGATTLRDFSGSVIQVFAK------------------------------------ 158 (383)
T ss_dssp ---CBEEEEEEETT-EEEEEEEEETTTEEEEEETTSCEEEEEEC------------------------------------
T ss_pred ---CceeEEEeCCC-CCCEEEEEeCCCEEEEEECCCCceEEEec------------------------------------
Confidence 88999999652 45799999999999999998643221110
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
...|...|.+++|+|++++|+++ .|+.|++||++ .+..
T Consensus 159 ----------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~ 197 (383)
T 3ei3_B 159 ----------------------------------------TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEI 197 (383)
T ss_dssp ----------------------------------------CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEE
T ss_pred ----------------------------------------cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEE
Confidence 13456789999999999999998 89999999995 3322
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
. .+.+|...|.+++|+|++..+|++++.|+.|++||+++.+....... ..+|...|.++
T Consensus 198 ~--------~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------------~~~~~~~v~~~ 256 (383)
T 3ei3_B 198 F--------KEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIA-------------EMPHEKPVNAA 256 (383)
T ss_dssp E--------EEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEE-------------EEECSSCEEEE
T ss_pred E--------EeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEE-------------EecCCCceEEE
Confidence 2 56779999999999999833999999999999999988542211111 12466899999
Q ss_pred EEcc-CCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccccccc-cccc-CCCccceeeEEEcCCCCEEEEecCCCcEE
Q 010206 349 KFAR-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLC-DLYE-NDSIFDKFECCLSGDGGRVATGSYSNLFR 424 (515)
Q Consensus 349 ~~s~-~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~v~~~~~s~~~~~l~s~s~dg~i~ 424 (515)
+|+| ++++|++++. +.|++||+++ .+....+..|......-. .+.. -.....+..++|+|++++ +++.||.|+
T Consensus 257 ~~s~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~ 333 (383)
T 3ei3_B 257 YFNPTDSTKLLTTDQRNEIRVYSSYD-WSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTID 333 (383)
T ss_dssp EECTTTSCEEEEEESSSEEEEEETTB-TTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEE
T ss_pred EEcCCCCCEEEEEcCCCcEEEEECCC-CccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEE
Confidence 9999 9999999875 9999999997 777777776653211000 0000 000012335777888877 888999999
Q ss_pred EEecCCCCcceeeecc--CCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 425 VFGCSEGSAESTTLEA--SKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 425 iw~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+||+.+++ ....+.+ |...+..++|+|++++|++++ |+.|++
T Consensus 334 iwd~~~~~-~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~i 377 (383)
T 3ei3_B 334 IYDANSGG-LVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILI 377 (383)
T ss_dssp EEETTTCC-EEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEE
T ss_pred EEecCCCc-eeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEE
Confidence 99999874 4567766 567777889999999999997 999999
No 54
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.8e-37 Score=283.53 Aligned_cols=258 Identities=16% Similarity=0.180 Sum_probs=196.9
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.+.|++++|+|+|++||+|+.|+.|+|||+.++... ....+.+|.
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~---------------------~~~~l~gH~---------- 57 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI---------------------LIADLRGHE---------- 57 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE---------------------EEEEEECCS----------
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE---------------------EEEEEcCCC----------
Confidence 3589999999999999999999999999999998765421 345678898
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|.+++|++..++.+|++++.|++|++||+++++.....
T Consensus 58 --~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~-------------------------------------- 97 (316)
T 3bg1_A 58 --GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSH-------------------------------------- 97 (316)
T ss_dssp --SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEE--------------------------------------
T ss_pred --ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEE--------------------------------------
Confidence 8899999975445679999999999999998765311110
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC--CCEEEEe-CCCcEEEEeCCCCCc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
. +.+|...|.+++|+|+ +.+|+++ .|++|++||++....
T Consensus 98 -------------------------------------~-~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~ 139 (316)
T 3bg1_A 98 -------------------------------------E-HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ 139 (316)
T ss_dssp -------------------------------------E-ECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC
T ss_pred -------------------------------------E-ccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC
Confidence 0 3578889999999998 7899998 899999999986532
Q ss_pred ccceecccCccccccCCceEEEEEecCC----------------CcEEEEEecCCeEEEEecCcccccccccceeeeccC
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTH----------------CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 331 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~----------------~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 331 (515)
.... ..+.+|...+.+++|+|+. ..+|++|+.|+.|++||++..... ..
T Consensus 140 ~~~~-----~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~----~~------ 204 (316)
T 3bg1_A 140 WEVK-----KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW----KE------ 204 (316)
T ss_dssp EEEC-----CBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE----EE------
T ss_pred ccee-----eeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc----ce------
Confidence 1100 1456789999999999972 158999999999999999654210 00
Q ss_pred CCccccccccccceeEEEEccCC----CEEEEEcC-CeEEEEEeeCCC---CCeeeEeeeccccccccccccCCCcccee
Q 010206 332 PGTRSFFTEIIASISDIKFARNG----RHILSRDY-MTLKLWDINMDS---GPVATFQVHEHLRPKLCDLYENDSIFDKF 403 (515)
Q Consensus 332 ~~~~~~~~~~~~~i~~~~~s~~~----~~l~s~~~-~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 403 (515)
...+.+|...|.+++|+|++ ++|++++. ++|++||+.... .....+..|... |+
T Consensus 205 ---~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~---------------v~ 266 (316)
T 3bg1_A 205 ---EQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDV---------------VW 266 (316)
T ss_dssp ---EECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSC---------------EE
T ss_pred ---eeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCc---------------EE
Confidence 11256788999999999986 78999875 999999997521 122334444332 56
Q ss_pred eEEEcCCCCEEEEecCCCcEEEEecCC
Q 010206 404 ECCLSGDGGRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 404 ~~~~s~~~~~l~s~s~dg~i~iw~~~~ 430 (515)
+++|+|++++|++++.|+.|++|+...
T Consensus 267 ~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 267 HVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred EEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 999999999999999999999999864
No 55
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=8e-36 Score=288.16 Aligned_cols=313 Identities=11% Similarity=0.192 Sum_probs=245.4
Q ss_pred ccccccce-EEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 31 EVQEVDII-SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 31 ~~~h~~~v-~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
..+|.+.| +|+ +++|++|++|+.||.|++||+.+++ ....+.+|.
T Consensus 114 l~~h~~~v~~~~--~~~g~~l~sg~~dg~i~vwd~~~~~-----------------------~~~~~~~h~--------- 159 (445)
T 2ovr_B 114 LKGHDDHVITCL--QFCGNRIVSGSDDNTLKVWSAVTGK-----------------------CLRTLVGHT--------- 159 (445)
T ss_dssp EECSTTSCEEEE--EEETTEEEEEETTSCEEEEETTTCC-----------------------EEEECCCCS---------
T ss_pred ecccCCCcEEEE--EEcCCEEEEEECCCcEEEEECCCCc-----------------------EEEEEcCCC---------
Confidence 45788875 554 4568999999999999999998765 335677888
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..|.+++|. +..+++++.|++|++||+.+++....
T Consensus 160 ---~~v~~~~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~-------------------------------------- 194 (445)
T 2ovr_B 160 ---GGVWSSQMR----DNIIISGSTDRTLKVWNAETGECIHT-------------------------------------- 194 (445)
T ss_dssp ---SCEEEEEEE----TTEEEEEETTSCEEEEETTTTEEEEE--------------------------------------
T ss_pred ---CCEEEEEec----CCEEEEEeCCCeEEEEECCcCcEEEE--------------------------------------
Confidence 889999994 35999999999999999988753221
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
+.+|...|.+++|+ ++.|+++ .|+.|++||+++++..
T Consensus 195 ----------------------------------------~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~ 232 (445)
T 2ovr_B 195 ----------------------------------------LYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCL 232 (445)
T ss_dssp ----------------------------------------ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEE
T ss_pred ----------------------------------------ECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEE
Confidence 24677889999985 5678887 8999999999876644
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
. .+.+|...|.+++| ++ ..+++|+.||.|++||+++++... .+.+|...|.++
T Consensus 233 ~--------~~~~~~~~v~~~~~--~~-~~l~~~~~dg~i~iwd~~~~~~~~----------------~~~~~~~~v~~~ 285 (445)
T 2ovr_B 233 H--------VLMGHVAAVRCVQY--DG-RRVVSGAYDFMVKVWDPETETCLH----------------TLQGHTNRVYSL 285 (445)
T ss_dssp E--------EEECCSSCEEEEEE--CS-SCEEEEETTSCEEEEEGGGTEEEE----------------EECCCSSCEEEE
T ss_pred E--------EEcCCcccEEEEEE--CC-CEEEEEcCCCEEEEEECCCCcEeE----------------EecCCCCceEEE
Confidence 3 45679999999999 55 789999999999999998876432 145567889999
Q ss_pred EEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 349 KFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 349 ~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
.| ++.++++++. +.|++||+.+ ++++..+..|... +.++. +++++|++|+.||.|++||
T Consensus 286 ~~--~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~---------------v~~~~--~~~~~l~~~~~dg~i~vwd 345 (445)
T 2ovr_B 286 QF--DGIHVVSGSLDTSIRVWDVET-GNCIHTLTGHQSL---------------TSGME--LKDNILVSGNADSTVKIWD 345 (445)
T ss_dssp EE--CSSEEEEEETTSCEEEEETTT-CCEEEEECCCCSC---------------EEEEE--EETTEEEEEETTSCEEEEE
T ss_pred EE--CCCEEEEEeCCCeEEEEECCC-CCEEEEEcCCccc---------------EEEEE--EeCCEEEEEeCCCeEEEEE
Confidence 99 7889999865 9999999986 7888888777654 22444 4678999999999999999
Q ss_pred cCCCCcceeeecc---CCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCcc-cc-CCccccccCCeeEEEEcCCCCEE
Q 010206 428 CSEGSAESTTLEA---SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSAL-DA-NGNAFDFSMKLLHLAWHPSENSI 502 (515)
Q Consensus 428 ~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~-~~-~~~~~~~~~~i~~~~~s~~~~~l 502 (515)
+.++. ....+.. |..++.+++++ ++++++|+.||.|++++-...... .+ ......+.+.|.+++|+|++.+|
T Consensus 346 ~~~~~-~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 422 (445)
T 2ovr_B 346 IKTGQ-CLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVC 422 (445)
T ss_dssp TTTCC-EEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEE
T ss_pred CCCCc-EEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEE
Confidence 98874 4466665 88899999995 579999999999999432211100 01 01113567889999999999999
Q ss_pred EEEcCCc-----EEEEe
Q 010206 503 ACAASNS-----LYMYY 514 (515)
Q Consensus 503 a~~~~~~-----~~i~~ 514 (515)
|+++.|+ +.+|+
T Consensus 423 a~~~~dg~~~~~l~v~d 439 (445)
T 2ovr_B 423 AVGSRNGTEETKLLVLD 439 (445)
T ss_dssp EEECSSSSSCCEEEEEE
T ss_pred EEcccCCCCccEEEEEE
Confidence 9999887 77775
No 56
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.8e-36 Score=284.97 Aligned_cols=301 Identities=14% Similarity=0.196 Sum_probs=220.0
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|++++| ++++++|++++ ++++++|++.+++............ .+...+
T Consensus 65 ~~V~~v~f--spdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~---------------------~~~~~~------ 114 (393)
T 1erj_A 65 SVVCCVKF--SNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN---------------------KDPENL------ 114 (393)
T ss_dssp SCCCEEEE--CTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------------------------------------
T ss_pred CEEEEEEE--CCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccc---------------------cccccc------
Confidence 88999999 55677888876 6899999999887655433221000 000000
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
.......+...|.+++|+|++++|++| .|+.|++||+++.+...
T Consensus 115 ---------------------------------~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~-- 159 (393)
T 1erj_A 115 ---------------------------------NTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM-- 159 (393)
T ss_dssp ---------------------------------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--
T ss_pred ---------------------------------cccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE--
Confidence 000012344569999999999999998 89999999998765432
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
.+.+|...|.+++|+|++ ..|++++.|+.|++||+++++... .+ .+...+.+++|+
T Consensus 160 ------~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~----~~-------------~~~~~v~~~~~~ 215 (393)
T 1erj_A 160 ------ILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSL----TL-------------SIEDGVTTVAVS 215 (393)
T ss_dssp ------EECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEE----EE-------------ECSSCEEEEEEC
T ss_pred ------EEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCeeEE----EE-------------EcCCCcEEEEEE
Confidence 567899999999999998 899999999999999999876421 11 123579999999
Q ss_pred c-CCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecC
Q 010206 352 R-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 352 ~-~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~ 429 (515)
| ++++|++|+. +.|++||+.+ +..+..+....... ...-..|++++|+|++++|++|+.|+.|++||+.
T Consensus 216 ~~~~~~l~~~s~d~~v~iwd~~~-~~~~~~~~~~~~~~--------~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~ 286 (393)
T 1erj_A 216 PGDGKYIAAGSLDRAVRVWDSET-GFLVERLDSENESG--------TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ 286 (393)
T ss_dssp STTCCEEEEEETTSCEEEEETTT-CCEEEEEC--------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCCCCEEEEEcCCCcEEEEECCC-CcEEEeecccccCC--------CCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 9 8999999875 9999999986 66665552211000 0011126699999999999999999999999997
Q ss_pred CCC-----------cceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcC-
Q 010206 430 EGS-----------AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHP- 497 (515)
Q Consensus 430 ~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~- 497 (515)
+.. .....+.+|...|.+++++|++++|++|+.|+.|++++.... .......+|...|.+++|+|
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~---~~~~~l~~h~~~v~~v~~~~~ 363 (393)
T 1erj_A 287 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---NPLLMLQGHRNSVISVAVANG 363 (393)
T ss_dssp --------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECSS
T ss_pred CCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC---eEEEEECCCCCCEEEEEecCC
Confidence 642 123567799999999999999999999999999999432211 12223346889999999986
Q ss_pred -----CCCEEEEEcCCc-EEEEe
Q 010206 498 -----SENSIACAASNS-LYMYY 514 (515)
Q Consensus 498 -----~~~~la~~~~~~-~~i~~ 514 (515)
++++||+++.|+ +.+|+
T Consensus 364 ~~~~p~~~~l~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 364 SSLGPEYNVFATGSGDCKARIWK 386 (393)
T ss_dssp CTTCTTCEEEEEEETTSEEEEEE
T ss_pred cCcCCCCCEEEEECCCCcEEECc
Confidence 688999888665 88986
No 57
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3.1e-37 Score=288.69 Aligned_cols=305 Identities=11% Similarity=0.085 Sum_probs=214.8
Q ss_pred ccceEEEEECCCCCeEEeecC-------CCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccc
Q 010206 35 VDIISAIEFDKSGDHLATGDR-------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (515)
Q Consensus 35 ~~~v~~v~~s~~g~~lasg~~-------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (515)
.-||.|++|+|||++||+|+. ++.|++|++........ ..+ .......+.+|+
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~--~~~-----------~~~~~~~l~~~~------- 73 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEK--EQF-----------HILSEFALEDND------- 73 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHH--HHE-----------EEEEEEECCTTS-------
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCccee--eee-----------eeeeEEEccCCC-------
Confidence 358999999999999999864 33699999876543200 000 000112355666
Q ss_pred cccccceeEEEEEeecCCCcEEEe-----------eeCCCeEEEEEccCCee--EEEeeccCCcccCCCCCCccCCCCcC
Q 010206 108 SLEIEEKINKIRWCQSANSALYLL-----------STNDKTIKLWKVQEKKV--KKVFDWNVHPEKAAGNGPIFGSHVSA 174 (515)
Q Consensus 108 ~~~~~~~v~~l~~~~~~~~~~l~~-----------~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~ 174 (515)
..|.++++. . ..+++ ++.|+.+++|++..... ........... ......+.
T Consensus 74 -----~~v~s~~~~--~--~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------ 137 (365)
T 4h5i_A 74 -----DSPTAIDAS--K--GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDAS-TNADDYTK------ 137 (365)
T ss_dssp -----CCCCEEEEE--T--TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCC-CCTTCCEE------
T ss_pred -----CceEEEEeC--C--CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeec-CCcccCEE------
Confidence 678888773 2 24444 45688899999876432 22211111110 00011122
Q ss_pred CCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCC
Q 010206 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADD 254 (515)
Q Consensus 175 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d 254 (515)
.++|+|||+.+.+ ++++.|+.|++|| +.. .++... ..|...|.+++|+|++++|+++.+
T Consensus 138 -~v~fSpDg~~la~----------as~~~d~~i~iwd--~~~------~~~~~~--~~~~~~V~~v~fspdg~~l~s~s~ 196 (365)
T 4h5i_A 138 -LVYISREGTVAAI----------ASSKVPAIMRIID--PSD------LTEKFE--IETRGEVKDLHFSTDGKVVAYITG 196 (365)
T ss_dssp -EEEECTTSSCEEE----------EESCSSCEEEEEE--TTT------TEEEEE--EECSSCCCEEEECTTSSEEEEECS
T ss_pred -EEEEcCCCCEEEE----------EECCCCCEEEEeE--CCC------CcEEEE--eCCCCceEEEEEccCCceEEeccc
Confidence 6899999998722 4677899999999 333 222223 257788999999999999999966
Q ss_pred CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCC----eEEEEecCcccccccccceeeecc
Q 010206 255 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG----SIRLIDMRQSALCDTHSKLFEEQE 330 (515)
Q Consensus 255 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg----~i~~wd~~~~~~~~~~~~~~~~~~ 330 (515)
+.+.+|+..+++..... ....|...|.+++|+|++ ..+++++.|+ .+++|++..........
T Consensus 197 ~~~~~~~~~~~~~~~~~------~~~~~~~~v~~v~fspdg-~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~------- 262 (365)
T 4h5i_A 197 SSLEVISTVTGSCIARK------TDFDKNWSLSKINFIADD-TVLIAASLKKGKGIVLTKISIKSGNTSVLRS------- 262 (365)
T ss_dssp SCEEEEETTTCCEEEEE------CCCCTTEEEEEEEEEETT-EEEEEEEESSSCCEEEEEEEEETTEEEEEEE-------
T ss_pred eeEEEEEeccCcceeee------ecCCCCCCEEEEEEcCCC-CEEEEEecCCcceeEEeecccccceecceee-------
Confidence 66777777766544321 345688899999999999 8999998887 68889987654211101
Q ss_pred CCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeE-eeeccccccccccccCCCccceeeEEEc
Q 010206 331 APGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATF-QVHEHLRPKLCDLYENDSIFDKFECCLS 408 (515)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s 408 (515)
..+.+|..+|++++|+|+|++||+|+. ++|+|||+.+ ++++..+ .+|... |++++|+
T Consensus 263 -----~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~-~~~~~~~~~gH~~~---------------V~~v~fS 321 (365)
T 4h5i_A 263 -----KQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD-LSMSKIFKQAHSFA---------------ITEVTIS 321 (365)
T ss_dssp -----EEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT-TEEEEEETTSSSSC---------------EEEEEEC
T ss_pred -----eeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC-CcEEEEecCcccCC---------------EEEEEEC
Confidence 124567789999999999999999875 9999999986 7777765 567755 6699999
Q ss_pred CCCCEEEEecCCCcEEEEecCCC
Q 010206 409 GDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 409 ~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
|||++||+||.|++|+||++...
T Consensus 322 pdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 322 PDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TTSCEEEEEETTSEEEEEECCTT
T ss_pred CCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999999999999754
No 58
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.2e-35 Score=279.53 Aligned_cols=304 Identities=14% Similarity=0.173 Sum_probs=228.0
Q ss_pred cccccceEEEEECCC----CCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeec--ccCCCcccc
Q 010206 32 VQEVDIISAIEFDKS----GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF--QSHEPEFDY 105 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~----g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~~~~ 105 (515)
.+|.++|++++|+|+ ...+++++.++.|+||++.+++.. ..+..+ ..|.
T Consensus 15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~--------------------~~~~~~~~~~~~----- 69 (366)
T 3k26_A 15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI--------------------RLLQSYVDADAD----- 69 (366)
T ss_dssp CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE--------------------EEEEEEECSCTT-----
T ss_pred cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE--------------------EeeeeccccCCC-----
Confidence 479999999999984 445666666779999999866532 011111 1233
Q ss_pred cccccccceeEEEEEeecCC--CcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCC
Q 010206 106 LKSLEIEEKINKIRWCQSAN--SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (515)
Q Consensus 106 ~~~~~~~~~v~~l~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g 183 (515)
..|++++|+|... +.+|++++.|+.|++||+.+++....
T Consensus 70 -------~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~-------------------------------- 110 (366)
T 3k26_A 70 -------ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKH-------------------------------- 110 (366)
T ss_dssp -------CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEE--------------------------------
T ss_pred -------CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeee--------------------------------
Confidence 7799999987644 67999999999999999987653221
Q ss_pred CccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC-CCCEEEEe-CCCcEEEEe
Q 010206 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWN 261 (515)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd 261 (515)
+.+|...|.+++|+| ++++|+++ .|+.|++||
T Consensus 111 ----------------------------------------------~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd 144 (366)
T 3k26_A 111 ----------------------------------------------YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWN 144 (366)
T ss_dssp ----------------------------------------------EESCCSCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred ----------------------------------------------ecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence 246788999999999 89999998 899999999
Q ss_pred CCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccce--ee----------ec
Q 010206 262 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL--FE----------EQ 329 (515)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~--~~----------~~ 329 (515)
+++++....+. .+..|...|.+++|+|++ .+|++++.||.|++||+++++........ +. ..
T Consensus 145 ~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (366)
T 3k26_A 145 IQTDTLVAIFG-----GVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQK 218 (366)
T ss_dssp TTTTEEEEEEC-----STTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEE
T ss_pred eecCeEEEEec-----ccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCccccccee
Confidence 98765443211 236799999999999998 89999999999999999987543211000 00 00
Q ss_pred cCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCC-------------eeeEeeecccccccccccc
Q 010206 330 EAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGP-------------VATFQVHEHLRPKLCDLYE 395 (515)
Q Consensus 330 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~-------------~~~~~~~~~~~~~~~~~~~ 395 (515)
..........+|...|.+++|+ +++|++++. +.|++||+.+.... +..+..|...
T Consensus 219 ~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 287 (366)
T 3k26_A 219 IHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCD--------- 287 (366)
T ss_dssp ECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCC---------
T ss_pred eccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCc---------
Confidence 0000111234488999999999 778998875 99999999863221 3333333322
Q ss_pred CCCccceeeEEEcCC--CCEEEEecCCCcEEEEecCCCCcc---eeeeccC--CCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 396 NDSIFDKFECCLSGD--GGRVATGSYSNLFRVFGCSEGSAE---STTLEAS--KNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 396 ~~~~~~v~~~~~s~~--~~~l~s~s~dg~i~iw~~~~~~~~---~~~~~~~--~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
|++++|+|+ +++|++|+.||.|++||+.++... ...+..| ..++..++|+|++++|++++.||.|++
T Consensus 288 ------v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 361 (366)
T 3k26_A 288 ------IWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWR 361 (366)
T ss_dssp ------SSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ------EEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEE
Confidence 458899999 999999999999999999987432 2467777 799999999999999999999999998
No 59
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-36 Score=291.42 Aligned_cols=321 Identities=12% Similarity=0.180 Sum_probs=242.5
Q ss_pred cccccchhhhhcccccccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCcccee
Q 010206 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY 92 (515)
Q Consensus 13 ~~~~w~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (515)
....|++...-. ........|...|++++|+|++++|++|+.||.|++|++.+... ....
T Consensus 46 ~v~iw~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~-------------------~~~~ 105 (416)
T 2pm9_A 46 SLELWSLLAADS-EKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN-------------------AINS 105 (416)
T ss_dssp CCEEEESSSGGG-CSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS-------------------CCCE
T ss_pred eEEEEEccCCCC-CcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccc-------------------cccc
Confidence 345687764211 11334467999999999999999999999999999999876321 0113
Q ss_pred eeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCC
Q 010206 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (515)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (515)
...+.+|. ..|++++|+|. ++.+|++++.|+.|++||+.+++...... .
T Consensus 106 ~~~~~~h~------------~~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~----------------- 154 (416)
T 2pm9_A 106 MARFSNHS------------SSVKTVKFNAK-QDNVLASGGNNGEIFIWDMNKCTESPSNY-T----------------- 154 (416)
T ss_dssp EEECCCSS------------SCCCEEEECSS-STTBEEEECSSSCEEBCBTTTTSSCTTTC-C-----------------
T ss_pred hhhccCCc------------cceEEEEEcCC-CCCEEEEEcCCCeEEEEECCCCccccccc-c-----------------
Confidence 45677787 88999999653 25699999999999999998764100000 0
Q ss_pred cCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC-CCEEEE
Q 010206 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFIS 251 (515)
Q Consensus 173 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s 251 (515)
.... .....|...|.+++|+|+ +.+|++
T Consensus 155 -----------------------------------------~~~~----------~~~~~~~~~v~~~~~~~~~~~~l~~ 183 (416)
T 2pm9_A 155 -----------------------------------------PLTP----------GQSMSSVDEVISLAWNQSLAHVFAS 183 (416)
T ss_dssp -----------------------------------------CBCC----------CCSCCSSCCCCEEEECSSCTTEEEE
T ss_pred -----------------------------------------cccc----------ccccCCCCCeeEEEeCCCCCcEEEE
Confidence 0000 002467889999999999 788999
Q ss_pred e-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCC---eEEEEecCcccccccccceee
Q 010206 252 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLIDMRQSALCDTHSKLFE 327 (515)
Q Consensus 252 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~ 327 (515)
+ .|+.|++||+++.+....+. . .....+|...|.+++|+|++..++++++.|+ .|++||++++....
T Consensus 184 ~~~dg~v~iwd~~~~~~~~~~~-~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~------- 254 (416)
T 2pm9_A 184 AGSSNFASIWDLKAKKEVIHLS-Y-TSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPL------- 254 (416)
T ss_dssp ESSSSCEEEEETTTTEEEEEEC-C-CCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCS-------
T ss_pred EcCCCCEEEEECCCCCcceEEe-c-cccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCc-------
Confidence 8 89999999998765443221 0 0111234788999999999757999999999 99999998863211
Q ss_pred eccCCCcccccc-ccccceeEEEEcc-CCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceee
Q 010206 328 EQEAPGTRSFFT-EIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE 404 (515)
Q Consensus 328 ~~~~~~~~~~~~-~~~~~i~~~~~s~-~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 404 (515)
..+. +|...|.+++|+| ++++|++++. +.|++||+.+ ++++..+..|... |++
T Consensus 255 --------~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~---------------v~~ 310 (416)
T 2pm9_A 255 --------QTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES-AEQLSQFPARGNW---------------CFK 310 (416)
T ss_dssp --------BCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS-CCEEEEEECSSSC---------------CCC
T ss_pred --------EEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC-CccceeecCCCCc---------------eEE
Confidence 1234 6778999999999 9999999875 9999999996 7888888877755 458
Q ss_pred EEEcCCC-CEEEEecCCCcEEEEecCCCCcceee----------------------------------eccCCCceeeEE
Q 010206 405 CCLSGDG-GRVATGSYSNLFRVFGCSEGSAESTT----------------------------------LEASKNPMRRQV 449 (515)
Q Consensus 405 ~~~s~~~-~~l~s~s~dg~i~iw~~~~~~~~~~~----------------------------------~~~~~~~v~~~~ 449 (515)
++|+|++ ++|++++.||.|++|++.+....... ...|..++..++
T Consensus 311 ~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (416)
T 2pm9_A 311 TKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAH 390 (416)
T ss_dssp EEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCE
T ss_pred EEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceE
Confidence 9999999 89999999999999999876433211 111677888999
Q ss_pred ECCCCCeeEeecCCCeEEE
Q 010206 450 QTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 450 ~~~~~~~l~s~~~d~~v~l 468 (515)
|+|+|++|++++.|+.|++
T Consensus 391 ~s~dg~~la~~~~d~~v~~ 409 (416)
T 2pm9_A 391 WAFGGKLVQITPDGKGVSI 409 (416)
T ss_dssp EETTTEEECBCTTSSCBCC
T ss_pred EeeCCeEEEEeCCCCeEEE
Confidence 9999999999999999998
No 60
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.2e-36 Score=286.72 Aligned_cols=330 Identities=10% Similarity=0.090 Sum_probs=230.8
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.++|++++|+| ++|++|+.||.|+||++.+++.. ..+.....+.+|.
T Consensus 12 ~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~-----------------~~~~~~~~~~~h~---------- 62 (397)
T 1sq9_A 12 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE-----------------NPKDKSYSHFVHK---------- 62 (397)
T ss_dssp SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC-----------------CGGGGEEEEECCT----------
T ss_pred hhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccc-----------------cCCCcceEEecCC----------
Confidence 458999999999999 79999999999999999876521 1122345566787
Q ss_pred ccceeEEEEEeec--CCC---cEEEeeeCCCeEEEEEccCCee-----EEEeeccCCcccCCCCCCccCCCCcCCCceee
Q 010206 111 IEEKINKIRWCQS--ANS---ALYLLSTNDKTIKLWKVQEKKV-----KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM 180 (515)
Q Consensus 111 ~~~~v~~l~~~~~--~~~---~~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 180 (515)
..|++++|+|. .++ .+|++++.|+.|++|++.+++. .......... ...+.+. .+.|+
T Consensus 63 --~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~-------~~~~~ 130 (397)
T 1sq9_A 63 --SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSD---MKKHSFW-------ALKWG 130 (397)
T ss_dssp --TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTT---GGGSCEE-------EEEEE
T ss_pred --CcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccc---cCCCcEE-------EEEEe
Confidence 88999999764 125 6999999999999999998763 3322221000 0013333 78999
Q ss_pred ----cCCCc-cccccccCCCCCCCCCCCcccEEeeeeeecc------cccccccceeeeee------ccCcCCeEEEEec
Q 010206 181 ----ANGGC-GERNFGCASNDSSFPPGGVSSLRLPVVVVTS------QETNLVAGCRRIYA------HAHDYHINSISNN 243 (515)
Q Consensus 181 ----~~g~~-l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~------~~~~~~~~~~~~~~------~~~~~~v~~~~~~ 243 (515)
|+++. + ++++.++.|++|| +.. .+... ..+...+. ..|...|.+++|+
T Consensus 131 ~~~~~~~~~~l------------~~~~~dg~i~iwd--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~ 195 (397)
T 1sq9_A 131 ASNDRLLSHRL------------VATDVKGTTYIWK--FHPFADESNSLTLN-WSPTLELQGTVESPMTPSQFATSVDIS 195 (397)
T ss_dssp CCC----CEEE------------EEEETTSCEEEEE--EESSSSHHHHTTTC-CCCEEEEEEEECCSSSSCCCCCEEEEC
T ss_pred eccCCCCceEE------------EEEeCCCcEEEEe--CCccccccccceee-ccCcceeeeeeccccCCCCCceEEEEC
Confidence 99998 8 9999999999999 444 22111 01110211 4588899999999
Q ss_pred CCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccc---c---CCceEEEEEecCCCcEEEEEecC---CeEEEEec
Q 010206 244 SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMED---L---TEVITSAEFHPTHCNMLAYSSSK---GSIRLIDM 313 (515)
Q Consensus 244 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~---~~~i~~i~~~p~~~~~l~~~~~d---g~i~~wd~ 313 (515)
|++ .|+++ .|+.|++||+++.+... .+.. | ...|.+++|+|++ .+|++++.| +.|++||+
T Consensus 196 ~~~-~l~~~~~dg~i~i~d~~~~~~~~--------~~~~~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~ 265 (397)
T 1sq9_A 196 ERG-LIATGFNNGTVQISELSTLRPLY--------NFESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYET 265 (397)
T ss_dssp TTS-EEEEECTTSEEEEEETTTTEEEE--------EEECCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEET
T ss_pred CCc-eEEEEeCCCcEEEEECCCCceeE--------EEeccccccccCCccceEEECCCC-CEEEEEecCCCCceEEEEEC
Confidence 999 99988 89999999998765443 3455 7 8999999999998 899999999 99999999
Q ss_pred CcccccccccceeeeccCCC-ccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEe------eecc
Q 010206 314 RQSALCDTHSKLFEEQEAPG-TRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQ------VHEH 385 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~------~~~~ 385 (515)
++++... .+.....+. .......|...|.+++|+|++++|++++. +.|++||+.+ ++++..+. .|..
T Consensus 266 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~ 340 (397)
T 1sq9_A 266 EFGERIG----SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT-KERITTLNMHCDDIEIEE 340 (397)
T ss_dssp TTCCEEE----EECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-TEEEEEEECCGGGCSSGG
T ss_pred CCCcccc----eeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC-CceeEEEecccCcccchh
Confidence 8876432 222100000 00001117789999999999999999875 9999999986 77778877 4410
Q ss_pred ccccccccccCCCccceeeEEEcCCC----------CEEEEecCCCcEEEEecCCC
Q 010206 386 LRPKLCDLYENDSIFDKFECCLSGDG----------GRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 386 ~~~~~~~~~~~~~~~~v~~~~~s~~~----------~~l~s~s~dg~i~iw~~~~~ 431 (515)
....-........-..|++++|+|++ ++|++++.||.|++|+++++
T Consensus 341 ~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 341 DILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp GCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred hhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 00000000000001236799999998 79999999999999999875
No 61
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=8.1e-36 Score=279.61 Aligned_cols=287 Identities=12% Similarity=0.177 Sum_probs=221.3
Q ss_pred cccccceEEEEECCCCC-eEEeecC---CCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccc
Q 010206 32 VQEVDIISAIEFDKSGD-HLATGDR---GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~-~lasg~~---dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (515)
.+|.+.|++++|+|+++ ++++|+. ||.|+||++.+++.. . ....+|.
T Consensus 15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~---------------------~-~~~~~~~------- 65 (357)
T 3i2n_A 15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK---------------------L-LREIEKA------- 65 (357)
T ss_dssp EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE---------------------E-EEEEEES-------
T ss_pred cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc---------------------c-eeeeccc-------
Confidence 46999999999999996 4556666 999999999876532 1 1122455
Q ss_pred cccccceeEEEEEeecC-CCcEEEeeeCCCeEEEEEccCCe-eEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCc
Q 010206 108 SLEIEEKINKIRWCQSA-NSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (515)
Q Consensus 108 ~~~~~~~v~~l~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 185 (515)
..|.+++|+|.. ++.+|++++.|+.|++||+.+++ ....
T Consensus 66 -----~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---------------------------------- 106 (357)
T 3i2n_A 66 -----KPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYS---------------------------------- 106 (357)
T ss_dssp -----SCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEE----------------------------------
T ss_pred -----CcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEE----------------------------------
Confidence 789999996542 25799999999999999998754 1100
Q ss_pred cccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEE------EecCCCCEEEEe-CCCcEE
Q 010206 186 GERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSI------SNNSDGETFISA-DDLRIN 258 (515)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------~~~~~~~~l~s~-~d~~i~ 258 (515)
+.+|...|.++ +|+|++++|+++ .|+.|+
T Consensus 107 --------------------------------------------~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 142 (357)
T 3i2n_A 107 --------------------------------------------VKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK 142 (357)
T ss_dssp --------------------------------------------ECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred --------------------------------------------EEecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence 34677888888 467899999998 899999
Q ss_pred EEeCCCCCcccceecccCccccc-cCCceEEEE----EecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCC
Q 010206 259 LWNLEISNQSFNIVDVKPANMED-LTEVITSAE----FHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 333 (515)
Q Consensus 259 iwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~i~----~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 333 (515)
+||+++.+.....+. ...+ +...+.+++ |+|++ .+|++++.|+.|++||+++++...
T Consensus 143 vwd~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~------------- 204 (357)
T 3i2n_A 143 VWDPRQKDDPVANME----PVQGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMALRW------------- 204 (357)
T ss_dssp EECTTSCSSCSEEEC----CCTTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTEEEE-------------
T ss_pred EEeCCCCCCcceecc----ccCCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCceee-------------
Confidence 999987763332211 1111 234789998 67888 899999999999999999876421
Q ss_pred ccccccccccceeEEEEcc---CCCEEEEEcC-CeEEEEEeeCCCCCeeeEe-----eeccccccccccccCCCccceee
Q 010206 334 TRSFFTEIIASISDIKFAR---NGRHILSRDY-MTLKLWDINMDSGPVATFQ-----VHEHLRPKLCDLYENDSIFDKFE 404 (515)
Q Consensus 334 ~~~~~~~~~~~i~~~~~s~---~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~ 404 (515)
...|...|.+++|+| ++.+|++++. +.|++||++. .++...+. .|... |++
T Consensus 205 ----~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~---------------v~~ 264 (357)
T 3i2n_A 205 ----ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT-QHPTKGFASVSEKAHKST---------------VWQ 264 (357)
T ss_dssp ----EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE-EETTTEEEEEEEECCSSC---------------EEE
T ss_pred ----ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC-CCcccceeeeccCCCcCC---------------EEE
Confidence 234557899999999 8999999875 9999999986 55555444 44433 569
Q ss_pred EEEcCCCC-EEEEecCCCcEEEEecCCCCc------------------ceeeeccCCCceeeEEECCCCCeeE-eecCCC
Q 010206 405 CCLSGDGG-RVATGSYSNLFRVFGCSEGSA------------------ESTTLEASKNPMRRQVQTPSRPSRP-LGSLSG 464 (515)
Q Consensus 405 ~~~s~~~~-~l~s~s~dg~i~iw~~~~~~~------------------~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~d~ 464 (515)
++|+|+++ +|++++.||.|++||++++.. ....+..|..+|.+++|+|++++|+ +++.|+
T Consensus 265 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~ 344 (357)
T 3i2n_A 265 VRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQ 344 (357)
T ss_dssp EEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred EEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCC
Confidence 99999999 899999999999999986532 3467789999999999999999998 899999
Q ss_pred eEEE
Q 010206 465 VVRR 468 (515)
Q Consensus 465 ~v~l 468 (515)
.|++
T Consensus 345 ~i~i 348 (357)
T 3i2n_A 345 TVRV 348 (357)
T ss_dssp EEEE
T ss_pred cEEE
Confidence 9999
No 62
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-35 Score=286.47 Aligned_cols=345 Identities=12% Similarity=0.127 Sum_probs=238.2
Q ss_pred cccccceEEEEECC-CCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 32 VQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 32 ~~h~~~v~~v~~s~-~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
.+|.+.|++++|+| ++++||+|+.||.|+|||+.+.+... .++....+ .|.
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~-----------------~~~~~~~~-~h~---------- 111 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE-----------------VYSSSLTY-DCS---------- 111 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC-----------------CCSCSEEE-ECS----------
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc-----------------ccceeeec-cCC----------
Confidence 57899999999999 99999999999999999987622110 00011111 355
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEcc---CCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQ---EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~ 187 (515)
..|++++|+ +++.+|++++.|++|++||+. .++.......+
T Consensus 112 --~~v~~~~~~--~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-------------------------------- 155 (437)
T 3gre_A 112 --STVTQITMI--PNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE-------------------------------- 155 (437)
T ss_dssp --SCEEEEEEC--TTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE--------------------------------
T ss_pred --CCEEEEEEe--CCCCEEEEEeCCCEEEEEEeccccCCceeeccccc--------------------------------
Confidence 889999995 467799999999999999995 44332222111
Q ss_pred cccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeecc--CcCCeEEEE--ecCCCCEEEEe-CCCcEEEEeC
Q 010206 188 RNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHA--HDYHINSIS--NNSDGETFISA-DDLRINLWNL 262 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~--~~~~~~~l~s~-~d~~i~iwd~ 262 (515)
.++-.. ... +...+.++. +++++.+|+++ .|+.|++||+
T Consensus 156 ------------------~i~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 199 (437)
T 3gre_A 156 ------------------CIRKIN------------------LKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDI 199 (437)
T ss_dssp ------------------EEEEEE------------------GGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEET
T ss_pred ------------------eeEEEE------------------ccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence 000000 111 556677777 67899999998 8999999999
Q ss_pred CCCCcccceecccCccccc--cCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccc
Q 010206 263 EISNQSFNIVDVKPANMED--LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 340 (515)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~--~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (515)
++.+... .+.. |...|++++|+|++ .+|++|+.||.|++||+++++... .+. ..
T Consensus 200 ~~~~~~~--------~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~----~~~-----------~~ 255 (437)
T 3gre_A 200 RTLERLQ--------IIENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVLIR----SWS-----------FG 255 (437)
T ss_dssp TTCCEEE--------EEECCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEEEE----EEB-----------CT
T ss_pred CCCeeeE--------EEccCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCccEEE----EEe-----------cC
Confidence 8776543 3344 78999999999998 999999999999999999876432 111 14
Q ss_pred cccceeEEEEcc----CCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccccccccc-----------ccCCCccceee
Q 010206 341 IIASISDIKFAR----NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDL-----------YENDSIFDKFE 404 (515)
Q Consensus 341 ~~~~i~~~~~s~----~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~v~~ 404 (515)
|..+|.+++|+| ++++|++|+. +.|++||+.+ ++.+..+.+|........-. ........|++
T Consensus 256 ~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~ 334 (437)
T 3gre_A 256 DHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK-GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALST 334 (437)
T ss_dssp TCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT-TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCC
T ss_pred CCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC-CcEEEEEEcCCCCCccceecccccccccceecccccCCceEE
Confidence 557899996654 6789999875 9999999986 78888888775433221110 00112334679
Q ss_pred EEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCC---CceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCC
Q 010206 405 CCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASK---NPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANG 481 (515)
Q Consensus 405 ~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~ 481 (515)
++|+ ++++|++|+.||.|++||+.+++ ....+.+|. ..+....+++...+++... + .... ....
T Consensus 335 l~~~-~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~-~~~~ 401 (437)
T 3gre_A 335 ISVS-NDKILLTDEATSSIVMFSLNELS-SSKAVISPSRFSDVFIPTQVTANLTMLLRKM-K---------RTST-HSVD 401 (437)
T ss_dssp EEEE-TTEEEEEEGGGTEEEEEETTCGG-GCEEEECC--CCCEEEEEEEETTEEEEEEEC-C------------------
T ss_pred EEEC-CceEEEecCCCCeEEEEECCCcc-cceEEecccccCceEEEEEeecceEEEEEec-c---------cccc-cccC
Confidence 9999 88999999999999999999874 446666653 3344455555544443330 0 0000 0111
Q ss_pred ccccccCCeeEEEEcCC--CCEEEEEcCCc-EEEEe
Q 010206 482 NAFDFSMKLLHLAWHPS--ENSIACAASNS-LYMYY 514 (515)
Q Consensus 482 ~~~~~~~~i~~~~~s~~--~~~la~~~~~~-~~i~~ 514 (515)
....|...|++++|+++ +.+|++++.+| +.||+
T Consensus 402 ~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 402 DSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp -----CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 22347899999999998 77899888766 88884
No 63
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=4.2e-35 Score=279.99 Aligned_cols=316 Identities=15% Similarity=0.193 Sum_probs=228.1
Q ss_pred ccccccceEEEEECC-CCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 31 EVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~-~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
..+|.++|++++|+| ++++||+|+.||.|+||++.+++......... . .........+|.
T Consensus 39 ~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~~--------- 99 (408)
T 4a11_B 39 ERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKA---V-------CSIGRDHPDVHR--------- 99 (408)
T ss_dssp CCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECE---E-------EEECTTCTTCCS---------
T ss_pred eeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccc---c-------ccccccccccCC---------
Confidence 456999999999999 99999999999999999998776431100000 0 000000113455
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..|.+++|+|. ++.+|++++.|+.|++||+.+++.....
T Consensus 100 ---~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~------------------------------------- 138 (408)
T 4a11_B 100 ---YSVETVQWYPH-DTGMFTSSSFDKTLKVWDTNTLQTADVF------------------------------------- 138 (408)
T ss_dssp ---SCEEEEEECTT-CTTCEEEEETTSEEEEEETTTTEEEEEE-------------------------------------
T ss_pred ---CcEEEEEEccC-CCcEEEEEeCCCeEEEeeCCCCccceec-------------------------------------
Confidence 88999999652 4568999999999999999887643322
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC---CCCEEEEe-CCCcEEEEeCCCC
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS---DGETFISA-DDLRINLWNLEIS 265 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~s~-~d~~i~iwd~~~~ 265 (515)
.+...+.++.+++ ++.+++++ .|+.|++||++++
T Consensus 139 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 176 (408)
T 4a11_B 139 ------------------------------------------NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG 176 (408)
T ss_dssp ------------------------------------------ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS
T ss_pred ------------------------------------------cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc
Confidence 1335567777777 45588888 8999999999876
Q ss_pred CcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccce
Q 010206 266 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 345 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 345 (515)
+... .+..|...|.+++|+|++..+|++|+.||.|++||++++.......................+|...|
T Consensus 177 ~~~~--------~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 248 (408)
T 4a11_B 177 SCSH--------ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKV 248 (408)
T ss_dssp CCCE--------EECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCE
T ss_pred ceee--------eecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCce
Confidence 5442 55679999999999999844799999999999999988753322111111111122233456788999
Q ss_pred eEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEE
Q 010206 346 SDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 424 (515)
Q Consensus 346 ~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~ 424 (515)
.+++|+|++++|++++. +.|++||+.+ ++....+..+..... ...+........+..+++++.|+.|+
T Consensus 249 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~ 317 (408)
T 4a11_B 249 NGLCFTSDGLHLLTVGTDNRMRLWNSSN-GENTLVNYGKVCNNS----------KKGLKFTVSCGCSSEFVFVPYGSTIA 317 (408)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTT-CCBCCCCCCCCCCCC----------SSCCCCEECCSSSSCEEEEEETTEEE
T ss_pred eEEEEcCCCCEEEEecCCCeEEEEECCC-Cccceeccccccccc----------cccceeEEecCCCceEEEEecCCEEE
Confidence 99999999999999865 9999999986 554443332221100 00011222233455667778899999
Q ss_pred EEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 425 VFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 425 iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+||+.++ .....+.+|..+|.+++|+|++++|++++.||.|++
T Consensus 318 v~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 360 (408)
T 4a11_B 318 VYTVYSG-EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILA 360 (408)
T ss_dssp EEETTTC-CEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred EEECcCC-cceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEE
Confidence 9999987 556889999999999999999999999999999999
No 64
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.8e-35 Score=287.54 Aligned_cols=321 Identities=12% Similarity=0.216 Sum_probs=244.6
Q ss_pred ccccccce-EEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 31 EVQEVDII-SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 31 ~~~h~~~v-~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
..+|.+.| +|+.+ ++++|++|+.||.|++||+.+++ ....+.+|.
T Consensus 117 l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~-----------------------~~~~~~~h~--------- 162 (464)
T 3v7d_B 117 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK-----------------------FLLQLSGHD--------- 162 (464)
T ss_dssp EECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTE-----------------------EEEEECCCS---------
T ss_pred EcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCc-----------------------EEEEEeCCC---------
Confidence 45788775 66666 56799999999999999987765 346677888
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceee--cCCCccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM--ANGGCGE 187 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~g~~l~ 187 (515)
..|.+++|+ +++ .+++++.||+|++||+.+++.......+ .+.+. .+.++ ++++.+
T Consensus 163 ---~~V~~l~~~--~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h--------~~~v~-------~l~~~~~~~~~~l- 220 (464)
T 3v7d_B 163 ---GGVWALKYA--HGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGH--------NSTVR-------CLDIVEYKNIKYI- 220 (464)
T ss_dssp ---SCEEEEEEC--STT-EEEEEETTSCEEEEETTTTEEEEEECCC--------SSCEE-------EEEEEESSSCEEE-
T ss_pred ---cCEEEEEEc--CCC-EEEEEeCCCCEEEEECCCCcEEEEECCC--------CCccE-------EEEEecCCCCCEE-
Confidence 889999995 444 8999999999999999998866655433 23333 66676 577777
Q ss_pred cccccCCCCCCCCCCCcccEEeeeeeecccccccccc----------------eeeeeeccCcCCeEEEEecCCCCEEEE
Q 010206 188 RNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAG----------------CRRIYAHAHDYHINSISNNSDGETFIS 251 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~----------------~~~~~~~~~~~~v~~~~~~~~~~~l~s 251 (515)
++++.++.+++|| +.......... .......+|...|.++ ++++++|++
T Consensus 221 -----------~s~s~d~~i~vwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~ 285 (464)
T 3v7d_B 221 -----------VTGSRDNTLHVWK--LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVS 285 (464)
T ss_dssp -----------EEEETTSCEEEEE--CCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEE
T ss_pred -----------EEEcCCCcEEEee--CCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEE
Confidence 9999999999999 44332211000 0122246788888877 577889999
Q ss_pred e-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeecc
Q 010206 252 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 330 (515)
Q Consensus 252 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 330 (515)
+ .|+.|++||+++.+... .+.+|...|.+++|+|++ ..+++|+.||.|++||+++++...
T Consensus 286 ~~~d~~i~vwd~~~~~~~~--------~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~---------- 346 (464)
T 3v7d_B 286 GSYDNTLIVWDVAQMKCLY--------ILSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGELMY---------- 346 (464)
T ss_dssp EETTSCEEEEETTTTEEEE--------EECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEEE----------
T ss_pred EeCCCeEEEEECCCCcEEE--------EecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEE----------
Confidence 8 89999999998765443 556799999999999998 899999999999999999876532
Q ss_pred CCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcC
Q 010206 331 APGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 409 (515)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 409 (515)
.+.+|...|.++.|+ +++|++++. |.|++||+.+ ........ +... +..++|++
T Consensus 347 ------~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~-~~~~~~~~-~~~~---------------~~~~~~~~ 401 (464)
T 3v7d_B 347 ------TLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDAND-YSRKFSYH-HTNL---------------SAITTFYV 401 (464)
T ss_dssp ------EECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT-CCEEEEEE-CTTC---------------CCEEEEEE
T ss_pred ------EEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCC-Cceeeeec-CCCC---------------ccEEEEEe
Confidence 145677899999998 578888765 9999999986 44333332 2211 23789999
Q ss_pred CCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 410 DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 410 ~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
++++|++|+ ||.|++||+++++.+...+..|..++.+++++ .+..+++++.|+.+.+
T Consensus 402 ~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i 458 (464)
T 3v7d_B 402 SDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFL 458 (464)
T ss_dssp CSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEE
T ss_pred CCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEE
Confidence 999999998 89999999999855544577889999999997 4455666667776665
No 65
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.9e-37 Score=288.38 Aligned_cols=301 Identities=11% Similarity=0.125 Sum_probs=215.9
Q ss_pred ccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccc
Q 010206 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (515)
.|.++|++++|+|+|++||+|+.||.|+||++.++.. .....+.+|.
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~---------------------~~~~~~~~h~------------ 55 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW---------------------KHARTFSDHD------------ 55 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE---------------------EECCCBCCCS------------
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce---------------------EEEEEEecCC------------
Confidence 3567999999999999999999999999999986521 1345677887
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCe-eEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
..|.+++|+ +++++|++++.|++|++||+.+++ ....
T Consensus 56 ~~v~~~~~s--~~~~~l~s~s~d~~v~vwd~~~~~~~~~~---------------------------------------- 93 (377)
T 3dwl_C 56 KIVTCVDWA--PKSNRIVTCSQDRNAYVYEKRPDGTWKQT---------------------------------------- 93 (377)
T ss_dssp SCEEEEEEC--TTTCCEEEEETTSSEEEC------CCCCE----------------------------------------
T ss_pred ceEEEEEEe--CCCCEEEEEeCCCeEEEEEcCCCCceeee----------------------------------------
Confidence 889999995 557799999999999999998764 0000
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccc
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 270 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 270 (515)
..+.+|...|.+++|+|++++|+++ .|+.|++||+++.+....
T Consensus 94 ------------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 137 (377)
T 3dwl_C 94 ------------------------------------LVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWV 137 (377)
T ss_dssp ------------------------------------EECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCC
T ss_pred ------------------------------------eEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccccee
Confidence 0034688899999999999999998 899999999987653111
Q ss_pred eecccCccccc-cCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccC--CCccccccccccceeE
Q 010206 271 IVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA--PGTRSFFTEIIASISD 347 (515)
Q Consensus 271 ~~~~~~~~~~~-~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~ 347 (515)
. ..+.. |...|.+++|+|++ ++|++++.|+.|++||++................. ......+ +|...|.+
T Consensus 138 ~-----~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~ 210 (377)
T 3dwl_C 138 S-----KHLKRPLRSTILSLDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHA 210 (377)
T ss_dssp C-----EEECSSCCSCEEEEEECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEE
T ss_pred e-----eEeecccCCCeEEEEEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEE
Confidence 1 14455 89999999999998 89999999999999999754422111000000000 0011123 78899999
Q ss_pred EEEccCCCEEEEEcC-CeEEEEEeeCCCCC----eeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCc
Q 010206 348 IKFARNGRHILSRDY-MTLKLWDINMDSGP----VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 422 (515)
Q Consensus 348 ~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~ 422 (515)
++|+|++++|++++. +.|++||+.+ ++. +..+..|... |.+++|+|++++|++|+.|+.
T Consensus 211 ~~~sp~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~---------------v~~~~~s~~~~~l~~~~~~~~ 274 (377)
T 3dwl_C 211 VGFSPSGNALAYAGHDSSVTIAYPSA-PEQPPRALITVKLSQLP---------------LRSLLWANESAIVAAGYNYSP 274 (377)
T ss_dssp EEECTTSSCEEEEETTTEEC-CEECS-TTSCEEECCCEECSSSC---------------EEEEEEEETTEEEEEESSSSE
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCC-CCCcceeeEeecCCCCc---------------eEEEEEcCCCCEEEEEcCCcE
Confidence 999999999999875 9999999997 555 6677766654 569999999999999987766
Q ss_pred EEEEecCCCC-ccee--------------------------------------------------eeccCCCceeeEEEC
Q 010206 423 FRVFGCSEGS-AEST--------------------------------------------------TLEASKNPMRRQVQT 451 (515)
Q Consensus 423 i~iw~~~~~~-~~~~--------------------------------------------------~~~~~~~~v~~~~~~ 451 (515)
+ +|+....+ .... ....|...|+++.+.
T Consensus 275 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~ 353 (377)
T 3dwl_C 275 I-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPY 353 (377)
T ss_dssp E-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEE
T ss_pred E-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEecc
Confidence 6 66654221 0000 011388999999876
Q ss_pred CCCC----eeEeecCCCeEEE
Q 010206 452 PSRP----SRPLGSLSGVVRR 468 (515)
Q Consensus 452 ~~~~----~l~s~~~d~~v~l 468 (515)
+... .++|++.||.|++
T Consensus 354 ~~~~~~~~~~~s~g~Dg~i~i 374 (377)
T 3dwl_C 354 AGTPGNITAFTSSGTDGRVVL 374 (377)
T ss_dssp EEETTEEEEEEEEETTSEEEE
T ss_pred CCCCCceEEEEeecCCCcEEE
Confidence 5443 5999999999998
No 66
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-35 Score=282.05 Aligned_cols=291 Identities=14% Similarity=0.194 Sum_probs=229.0
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccc
Q 010206 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (515)
|.+.|++++|+|++++|++|+.||.|++|+. +++ ....+.+|. .
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~-~~~-----------------------~~~~~~~~~------------~ 150 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNK-TGA-----------------------LLNVLNFHR------------A 150 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEET-TSC-----------------------EEEEECCCC------------S
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEeC-CCC-----------------------eeeeccCCC------------c
Confidence 6889999999999999999999999999993 322 335567777 8
Q ss_pred eeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccC
Q 010206 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (515)
Q Consensus 114 ~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~ 193 (515)
.|.+++|+ +++.+|++++.|+.|++||+.+++............
T Consensus 151 ~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---------------------------------- 194 (425)
T 1r5m_A 151 PIVSVKWN--KDGTHIISMDVENVTILWNVISGTVMQHFELKETGG---------------------------------- 194 (425)
T ss_dssp CEEEEEEC--TTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------------------------------------
T ss_pred cEEEEEEC--CCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCc----------------------------------
Confidence 89999995 567799999999999999999887655443321100
Q ss_pred CCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccccee
Q 010206 194 SNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 272 (515)
Q Consensus 194 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 272 (515)
..+.. .........+.+++|++++. ++++ .++.|++||+++.+...
T Consensus 195 -----------~~~~~------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~d~~~~~~~~--- 241 (425)
T 1r5m_A 195 -----------SSINA------------------ENHSGDGSLGVDVEWVDDDK-FVIPGPKGAIFVYQITEKTPTG--- 241 (425)
T ss_dssp ----------------------------------------CCCBSCCEEEETTE-EEEECGGGCEEEEETTCSSCSE---
T ss_pred -----------cceee------------------ccccCCcceeeEEEEcCCCE-EEEEcCCCeEEEEEcCCCceee---
Confidence 00000 00122334478889998875 5555 89999999998765432
Q ss_pred cccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEcc
Q 010206 273 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 352 (515)
Q Consensus 273 ~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 352 (515)
.+..|...|.+++|+|++ .+|++++.|+.|++||+++++... .+.+|...|.+++|+|
T Consensus 242 -----~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~----------------~~~~~~~~i~~~~~~~ 299 (425)
T 1r5m_A 242 -----KLIGHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNSQN----------------CFYGHSQSIVSASWVG 299 (425)
T ss_dssp -----EECCCSSCEEEEEEETTT-TEEEEEETTSCEEEECSSSBSCSE----------------EECCCSSCEEEEEEET
T ss_pred -----eeccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCccce----------------EecCCCccEEEEEECC
Confidence 456789999999999998 899999999999999998875421 1345668899999999
Q ss_pred CCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCC
Q 010206 353 NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 353 ~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
++ ++++++. +.|++||+.+ ++.+..+..|... +.+++|+|++++|++++.||.|++||+.++
T Consensus 300 ~~-~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~---------------i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~ 362 (425)
T 1r5m_A 300 DD-KVISCSMDGSVRLWSLKQ-NTLLALSIVDGVP---------------IFAGRISQDGQKYAVAFMDGQVNVYDLKKL 362 (425)
T ss_dssp TT-EEEEEETTSEEEEEETTT-TEEEEEEECTTCC---------------EEEEEECTTSSEEEEEETTSCEEEEECHHH
T ss_pred CC-EEEEEeCCCcEEEEECCC-CcEeEecccCCcc---------------EEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence 99 7777664 9999999986 7777777766544 569999999999999999999999999876
Q ss_pred C-------------------cceeeeccCCC--ceeeEEECCCCCeeEeecCCCeEEE
Q 010206 432 S-------------------AESTTLEASKN--PMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 432 ~-------------------~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
. .....+..|.. ++..++|+|++++|++++.||.|++
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 420 (425)
T 1r5m_A 363 NSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSV 420 (425)
T ss_dssp HC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEE
T ss_pred ccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEE
Confidence 3 05578888876 9999999999999999999999998
No 67
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-37 Score=287.79 Aligned_cols=326 Identities=8% Similarity=-0.014 Sum_probs=234.3
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
..-...|.+|+|||||+++|+++.|++|+ |.... ..+.+|.
T Consensus 12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~--------------------------~~l~gh~----------- 52 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA--------------------------KDINCNS----------- 52 (588)
T ss_dssp CCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCC--------------------------SCCSSBG-----------
T ss_pred hHhhccEEEEEECCCCCEEEEEcCCceee--ccccc--------------------------ceecCCC-----------
Confidence 34568999999999999999999999999 63322 2345777
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
..|.+++|+| +| .++.+.+|+.+... ...... ...|. .++|||+|+.+
T Consensus 53 -~~v~~V~FsP--dg-------~~~~~~~~~~~~~~---~~~~~~-------~~~V~-------~vawSPdG~~L----- 100 (588)
T 2j04_A 53 -KNLFHVKEFP--LE-------FENKLDFELAQQNG---LLNSQP-------VCYPR-------VCKPSPIDDWM----- 100 (588)
T ss_dssp -GGTEEEEEEC--CC-------CCCTTTTSCCCSSC---SSTTSC-------SCCEE-------EEEECSSSSCE-----
T ss_pred -ccEEEEEECC--CC-------CcceEEEEeCCCce---EeecCC-------CCcEE-------EEEECCCCCEE-----
Confidence 7899999965 44 45555555543222 111110 23344 88999999999
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcC-----CeEEEEecCCCCEEEEe-CCCcEEEEeCCCC
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDY-----HINSISNNSDGETFISA-DDLRINLWNLEIS 265 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~ 265 (515)
++++.+|.+++|| .. . +... +. |.. .|.+++|+|||++|++| .||+|++||+.++
T Consensus 101 -------As~s~dg~V~iwd--~~---~-----~l~~-l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~ 161 (588)
T 2j04_A 101 -------AVLSNNGNVSVFK--DN---K-----MLTN-LD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKN 161 (588)
T ss_dssp -------EEEETTSCEEEEE--TT---E-----EEEE-CC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCC
T ss_pred -------EEEeCCCcEEEEe--CC---c-----eeee-cc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCC
Confidence 9999999999998 21 1 2222 23 444 59999999999999999 8999999999875
Q ss_pred Ccc-c---ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccc
Q 010206 266 NQS-F---NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 341 (515)
Q Consensus 266 ~~~-~---~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (515)
... . .+..++ ....+|...|.+++|+|++ +++++.|+.|++||+..+... +....+ ..+|
T Consensus 162 ~l~~~~~i~l~ti~-~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~-~~~~tL-----------~~~h 225 (588)
T 2j04_A 162 SENTPEFYFESSIR-LSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQ-PVSRMI-----------QNAS 225 (588)
T ss_dssp TTTCCCCEEEEEEE-CSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSC-CCEEEE-----------ECCC
T ss_pred ccccccceeeeeee-cccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccc-cceeee-----------cccc
Confidence 420 0 011000 1236688999999999986 888999999999999776521 000111 1346
Q ss_pred ccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEE--cCCCCEEEEecC
Q 010206 342 IASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL--SGDGGRVATGSY 419 (515)
Q Consensus 342 ~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~s~ 419 (515)
...|.+++|+ |+.|+++++++|++||+.. ++......+|... +..++| +||+..|++++.
T Consensus 226 ~~~V~svaFs--g~~LASa~~~tIkLWd~~~-~~~~~~~~gh~~~---------------V~~va~~~s~d~~~La~a~e 287 (588)
T 2j04_A 226 RRKITDLKIV--DYKVVLTCPGYVHKIDLKN-YSISSLKTGSLEN---------------FHIIPLNHEKESTILLMSNK 287 (588)
T ss_dssp SSCCCCEEEE--TTEEEEECSSEEEEEETTT-TEEEEEECSCCSC---------------CCEEEETTCSSCEEEEECSS
T ss_pred cCcEEEEEEE--CCEEEEEeCCeEEEEECCC-CeEEEEEcCCCce---------------EEEEEeeeCCCCCEEEEEcC
Confidence 6789999999 6899998889999999984 4332223256654 458999 999999999999
Q ss_pred CCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCC
Q 010206 420 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSE 499 (515)
Q Consensus 420 dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 499 (515)
||+ ++|... .+.++|++..+++. |+++++ |+....++ ..++....|.+++|||||
T Consensus 288 dG~-klw~~d-----------------~~~~spd~~l~a~~--d~~v~l---W~~~g~~l--~~~~~~~~I~~va~SPdG 342 (588)
T 2j04_A 288 TSY-KVLLED-----------------ELHVTADNIIAPYL--EKKFKK---WSTIWNEF--NNYETTLVIHGISLSPDG 342 (588)
T ss_dssp CEE-EEEESS-----------------SEEEECCCSSHHHH--HHHHHH---TTTTTTSS--SSSCCEEEEEEEEECTTS
T ss_pred CCC-EEEeec-----------------cEEECCCceEEEEc--CCEEEE---EECCCCce--eeeccceEEEEEEECCCC
Confidence 999 999987 25699999988886 888888 33321111 122335679999999999
Q ss_pred CEEEEEc
Q 010206 500 NSIACAA 506 (515)
Q Consensus 500 ~~la~~~ 506 (515)
+.+|+++
T Consensus 343 ~~lA~~~ 349 (588)
T 2j04_A 343 YSIAIVY 349 (588)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999876
No 68
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-35 Score=275.14 Aligned_cols=263 Identities=14% Similarity=0.210 Sum_probs=205.0
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.+.|++++|+|++++||+|+.||.|+||++..... .....+.+|.
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~---------------------~~~~~~~~h~---------- 55 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH---------------------KLIDTLTGHE---------- 55 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE---------------------EEEEEECCCS----------
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc---------------------eeeeEecCCC----------
Confidence 458999999999999999999999999999999874321 2445677887
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|++++|++..++.+|++++.|+.|++||+.+++......
T Consensus 56 --~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~------------------------------------- 96 (379)
T 3jrp_A 56 --GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV------------------------------------- 96 (379)
T ss_dssp --SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEE-------------------------------------
T ss_pred --CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeee-------------------------------------
Confidence 88999999765557899999999999999998875222211
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC--CCEEEEe-CCCcEEEEeCCCCCc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
...|...|.+++|+|+ +.+|+++ .|+.|++||++....
T Consensus 97 ---------------------------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 137 (379)
T 3jrp_A 97 ---------------------------------------HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 137 (379)
T ss_dssp ---------------------------------------ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC
T ss_pred ---------------------------------------ecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc
Confidence 2467789999999999 9999998 899999999987643
Q ss_pred ccceecccCccccccCCceEEEEEec-------------CCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCc
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHP-------------THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 334 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p-------------~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 334 (515)
.... .+..|...|.+++|+| ++ .+|++++.|+.|++||++++.......
T Consensus 138 ~~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~----------- 199 (379)
T 3jrp_A 138 TSPI------IIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLE----------- 199 (379)
T ss_dssp CCEE------EEECCTTCEEEEEECCCC----------CTT-CEEEEEETTSCEEEEEEETTTTEEEEE-----------
T ss_pred eeeE------EecCCCCceEEEEEcCccccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCcceeeE-----------
Confidence 3221 4567899999999999 56 899999999999999998764321111
Q ss_pred cccccccccceeEEEEccC---CCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCC
Q 010206 335 RSFFTEIIASISDIKFARN---GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 410 (515)
Q Consensus 335 ~~~~~~~~~~i~~~~~s~~---~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 410 (515)
..+.+|...|.+++|+|+ +++|++++. +.|++||+............... .....+++++|+|+
T Consensus 200 -~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------~~~~~v~~~~~s~~ 267 (379)
T 3jrp_A 200 -STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEE-----------KFPDVLWRASWSLS 267 (379)
T ss_dssp -EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSS-----------CCSSCEEEEEECSS
T ss_pred -EEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccc-----------cCCCcEEEEEEcCC
Confidence 124567789999999999 899999875 99999999863222111111000 01112569999999
Q ss_pred CCEEEEecCCCcEEEEecCCCC
Q 010206 411 GGRVATGSYSNLFRVFGCSEGS 432 (515)
Q Consensus 411 ~~~l~s~s~dg~i~iw~~~~~~ 432 (515)
+++|++++.||.|++|++....
T Consensus 268 g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 268 GNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp SCCEEEEESSSSEEEEEEEETT
T ss_pred CCEEEEecCCCcEEEEeCCCCC
Confidence 9999999999999999998653
No 69
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4.7e-34 Score=273.31 Aligned_cols=278 Identities=12% Similarity=0.195 Sum_probs=222.7
Q ss_pred ceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeE
Q 010206 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (515)
Q Consensus 37 ~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 116 (515)
.++.|+||++ ++||+|. |++|+|||..+++.. ....+.+|. ..|+
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~---------------------~~~~~~~~~------------~~V~ 151 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDIL---------------------QLLQMEQPG------------EYIS 151 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEE---------------------EEEECCSTT------------CCEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEE---------------------EEEEecCCC------------CcEE
Confidence 4678999986 5888875 899999999887643 223345666 7899
Q ss_pred EEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCC
Q 010206 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND 196 (515)
Q Consensus 117 ~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 196 (515)
+|+| ++++.+|++|+.|++|++||+.+++....
T Consensus 152 sv~f--spdg~~lasgs~Dg~v~iWd~~~~~~~~~--------------------------------------------- 184 (420)
T 4gga_A 152 SVAW--IKEGNYLAVGTSSAEVQLWDVQQQKRLRN--------------------------------------------- 184 (420)
T ss_dssp EEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEE---------------------------------------------
T ss_pred EEEE--CCCCCEEEEEECCCeEEEEEcCCCcEEEE---------------------------------------------
Confidence 9999 55788999999999999999988764322
Q ss_pred CCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceeccc
Q 010206 197 SSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 275 (515)
Q Consensus 197 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~ 275 (515)
..+|...+.++++ ++..|++| .|+.+++||.........
T Consensus 185 ---------------------------------~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~----- 224 (420)
T 4gga_A 185 ---------------------------------MTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVA----- 224 (420)
T ss_dssp ---------------------------------ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEE-----
T ss_pred ---------------------------------EeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeE-----
Confidence 2467778888777 46789998 899999999986654432
Q ss_pred CccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCC
Q 010206 276 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 355 (515)
Q Consensus 276 ~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 355 (515)
.+.+|...+..+.++|++ .++++++.|+.+++||..+++....... ....|...|.+++|+|++.
T Consensus 225 --~~~~h~~~~~~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~------------~~~~~~~~V~~~~~~p~~~ 289 (420)
T 4gga_A 225 --TLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQ------------TFTQHQGAVKAVAWCPWQS 289 (420)
T ss_dssp --EEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCCSSCSCCSE------------EECCCSSCEEEEEECTTCT
T ss_pred --EecccccceeeeeecCCC-CeeeeeeccccceEEeeccccccceeee------------eecccCCceeeeeeCCCcc
Confidence 567899999999999999 8999999999999999988754322111 2345668999999999654
Q ss_pred -EEEEE--c-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEec--CCCcEEEEecC
Q 010206 356 -HILSR--D-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS--YSNLFRVFGCS 429 (515)
Q Consensus 356 -~l~s~--~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s--~dg~i~iw~~~ 429 (515)
+++++ + |++|++||+.+ +++...+..+.. +.++.|+|+++.+++++ .|+.|++||+.
T Consensus 290 ~~la~~~gs~D~~I~iwd~~t-~~~~~~~~~~~~----------------v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~ 352 (420)
T 4gga_A 290 NVLATGGGTSDRHIRIWNVCS-GACLSAVDAHSQ----------------VCSILWSPHYKELISGHGFAQNQLVIWKYP 352 (420)
T ss_dssp TEEEEEECTTTCEEEEEETTT-TEEEEEEECSSC----------------EEEEEEETTTTEEEEEECTTTCCEEEEETT
T ss_pred cEEEEEeecCCCEEEEEeCCc-cccceeeccccc----------------eeeeeecCCCCeEEEEEecCCCEEEEEECC
Confidence 55543 3 49999999986 777766665442 45899999999988754 79999999999
Q ss_pred CCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEe
Q 010206 430 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRV 469 (515)
Q Consensus 430 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~ 469 (515)
++ ..+.++.+|..+|.+++|+|++++|+||+.|++|+++
T Consensus 353 ~~-~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriW 391 (420)
T 4gga_A 353 TM-AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391 (420)
T ss_dssp TC-CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred CC-cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 87 5568999999999999999999999999999999993
No 70
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-33 Score=266.23 Aligned_cols=296 Identities=15% Similarity=0.174 Sum_probs=231.1
Q ss_pred eeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCC
Q 010206 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (515)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (515)
....+.+|. ..|++++|+ +++.+|++++.|+.|++||+.+++....
T Consensus 24 ~~~~l~~h~------------~~v~~~~~s--~~~~~l~~~~~dg~i~vwd~~~~~~~~~-------------------- 69 (369)
T 3zwl_B 24 KAIKLTGHE------------RPLTQVKYN--KEGDLLFSCSKDSSASVWYSLNGERLGT-------------------- 69 (369)
T ss_dssp EEEEEECCS------------SCEEEEEEC--TTSCEEEEEESSSCEEEEETTTCCEEEE--------------------
T ss_pred ccEEEEEee------------ceEEEEEEc--CCCCEEEEEeCCCEEEEEeCCCchhhhh--------------------
Confidence 344577787 899999995 5677999999999999999887653221
Q ss_pred CcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEE
Q 010206 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 251 (515)
Q Consensus 172 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 251 (515)
+.+|...|.+++|+|++++|++
T Consensus 70 ----------------------------------------------------------~~~h~~~v~~~~~~~~~~~l~s 91 (369)
T 3zwl_B 70 ----------------------------------------------------------LDGHTGTIWSIDVDCFTKYCVT 91 (369)
T ss_dssp ----------------------------------------------------------ECCCSSCEEEEEECTTSSEEEE
T ss_pred ----------------------------------------------------------hhhcCCcEEEEEEcCCCCEEEE
Confidence 3467889999999999999999
Q ss_pred e-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC-----CeEEEEecCcccccccccce
Q 010206 252 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-----GSIRLIDMRQSALCDTHSKL 325 (515)
Q Consensus 252 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~ 325 (515)
+ .|+.|++||+.+++... .+. +...+.+++|+|++ ..+++++.+ +.|++||++.......
T Consensus 92 ~~~dg~i~iwd~~~~~~~~--------~~~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~---- 157 (369)
T 3zwl_B 92 GSADYSIKLWDVSNGQCVA--------TWK-SPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATHE---- 157 (369)
T ss_dssp EETTTEEEEEETTTCCEEE--------EEE-CSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTCC----
T ss_pred EeCCCeEEEEECCCCcEEE--------Eee-cCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCcccee----
Confidence 8 89999999998776543 222 78889999999998 899999998 9999999987654321
Q ss_pred eeeccCCCcccccccccc--ceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccce
Q 010206 326 FEEQEAPGTRSFFTEIIA--SISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 402 (515)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 402 (515)
+.... ......+..|.. .+.+++|+|++++|++++. +.|++||+.+..+.+..+..|... |
T Consensus 158 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---------------v 221 (369)
T 3zwl_B 158 LTKVS-EEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKS---------------I 221 (369)
T ss_dssp EEEEC-SSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSC---------------E
T ss_pred ecccc-cceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCc---------------e
Confidence 11100 111122344445 8999999999999999875 999999998645667777766654 5
Q ss_pred eeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCC--------------eEEE
Q 010206 403 FECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSG--------------VVRR 468 (515)
Q Consensus 403 ~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~--------------~v~l 468 (515)
.+++|+|++++|++++.||.|++||+.++. ....+. +..++..++++|+++++++++.++ .+++
T Consensus 222 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 299 (369)
T 3zwl_B 222 SDMQFSPDLTYFITSSRDTNSFLVDVSTLQ-VLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARF 299 (369)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCC-EEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEE
T ss_pred eEEEECCCCCEEEEecCCceEEEEECCCCc-eeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEE
Confidence 699999999999999999999999999874 434554 778899999999999999999988 5666
Q ss_pred ecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCc-EEEEe
Q 010206 469 VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS-LYMYY 514 (515)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~-~~i~~ 514 (515)
++.... +.......|...|.+++|+|++++|++++.++ +.+|+
T Consensus 300 ~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 343 (369)
T 3zwl_B 300 YHKIFE---EEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHH 343 (369)
T ss_dssp EETTTC---CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EecCCC---cchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 222111 12223345789999999999999999888655 88886
No 71
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4e-34 Score=266.16 Aligned_cols=296 Identities=16% Similarity=0.192 Sum_probs=224.7
Q ss_pred eeeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCC
Q 010206 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (515)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (515)
.+..++++|. +.|++|+|+|. ++++|++|+.|++|++||+.+.+....
T Consensus 29 ~l~~tL~GH~------------~~V~~v~~sp~-~~~~l~S~s~D~~i~vWd~~~~~~~~~------------------- 76 (340)
T 4aow_A 29 TLRGTLKGHN------------GWVTQIATTPQ-FPDMILSASRDKTIIMWKLTRDETNYG------------------- 76 (340)
T ss_dssp EEEEEECCCS------------SCEEEEEECTT-CTTEEEEEETTSCEEEEEECCSSSCSE-------------------
T ss_pred EEEEEECCcc------------CCEEEEEEeCC-CCCEEEEEcCCCeEEEEECCCCCcccc-------------------
Confidence 3556789999 99999999653 246999999999999999876531110
Q ss_pred CCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEE
Q 010206 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 250 (515)
Q Consensus 171 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 250 (515)
.+.+. +.+|...|.+++|+|++++|+
T Consensus 77 -----------------------------------------------------~~~~~-l~~h~~~V~~~~~s~dg~~l~ 102 (340)
T 4aow_A 77 -----------------------------------------------------IPQRA-LRGHSHFVSDVVISSDGQFAL 102 (340)
T ss_dssp -----------------------------------------------------EEEEE-ECCCSSCEEEEEECTTSSEEE
T ss_pred -----------------------------------------------------eeeEE-EeCCCCCEEEEEECCCCCEEE
Confidence 01111 468999999999999999999
Q ss_pred Ee-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeec
Q 010206 251 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 329 (515)
Q Consensus 251 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 329 (515)
++ .|+.|++|+........ ....+...+..+.+++++ ..|++++.|+.+++||+.......
T Consensus 103 s~~~d~~i~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~~~--------- 164 (340)
T 4aow_A 103 SGSWDGTLRLWDLTTGTTTR--------RFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKYT--------- 164 (340)
T ss_dssp EEETTSEEEEEETTTTEEEE--------EEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEE---------
T ss_pred EEcccccceEEeecccceee--------eecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCceEE---------
Confidence 98 89999999998665432 334567788899999998 899999999999999987654211
Q ss_pred cCCCccccccccccceeEEEEccCC--CEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEE
Q 010206 330 EAPGTRSFFTEIIASISDIKFARNG--RHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC 406 (515)
Q Consensus 330 ~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 406 (515)
....+|...+..++|++++ .++++++ ++.|++||+.+ .+.+..+.+|... |++++
T Consensus 165 ------~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-~~~~~~~~~h~~~---------------v~~~~ 222 (340)
T 4aow_A 165 ------VQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN-CKLKTNHIGHTGY---------------LNTVT 222 (340)
T ss_dssp ------ECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT-TEEEEEECCCSSC---------------EEEEE
T ss_pred ------EEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC-CceeeEecCCCCc---------------EEEEE
Confidence 1135577889999999864 4667765 49999999986 7777888777654 56999
Q ss_pred EcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCC--CC----ccccC
Q 010206 407 LSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGAD--NS----ALDAN 480 (515)
Q Consensus 407 ~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~--~~----~~~~~ 480 (515)
|+|++++|++|+.||.|++||+.+. .....+.. ...+..+.++|++.+ ++++.|+.|++++-.. .. .....
T Consensus 223 ~s~~~~~l~s~s~Dg~i~iwd~~~~-~~~~~~~~-~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 299 (340)
T 4aow_A 223 VSPDGSLCASGGKDGQAMLWDLNEG-KHLYTLDG-GDIINALCFSPNRYW-LCAATGPSIKIWDLEGKIIVDELKQEVIS 299 (340)
T ss_dssp ECTTSSEEEEEETTCEEEEEETTTT-EEEEEEEC-SSCEEEEEECSSSSE-EEEEETTEEEEEETTTTEEEEEECCC---
T ss_pred ECCCCCEEEEEeCCCeEEEEEeccC-ceeeeecC-CceEEeeecCCCCce-eeccCCCEEEEEECCCCeEEEecccccee
Confidence 9999999999999999999999976 34345544 468999999998755 4566799999933211 10 00111
Q ss_pred CccccccCCeeEEEEcCCCCEEEEEcCCc-EEEEeC
Q 010206 481 GNAFDFSMKLLHLAWHPSENSIACAASNS-LYMYYA 515 (515)
Q Consensus 481 ~~~~~~~~~i~~~~~s~~~~~la~~~~~~-~~i~~~ 515 (515)
.....|...|++++|+||+++|++++.|+ +.||++
T Consensus 300 ~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~ 335 (340)
T 4aow_A 300 TSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335 (340)
T ss_dssp ----CCCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred eeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 12235788999999999999999988665 899973
No 72
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.4e-34 Score=269.58 Aligned_cols=288 Identities=11% Similarity=0.040 Sum_probs=227.9
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
.+|.+.|++++|+|++++|++|+.||.|+||++.++... .....+.+|.
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~--------------------~~~~~~~~~~----------- 56 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN--------------------VDLLQSLRYK----------- 56 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE--------------------EEEEEEEECS-----------
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc--------------------ccceeeeecC-----------
Confidence 379999999999999999999999999999999866511 0112344666
Q ss_pred cceeEEEEEeecCCCc-EEEeeeCCCeEEEEEc-cCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 112 EEKINKIRWCQSANSA-LYLLSTNDKTIKLWKV-QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~-~l~~~~~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..|++++|+| ++. +|++++.|+.|++||+ .+++...
T Consensus 57 -~~v~~~~~~~--~~~~~l~~~~~dg~i~~wd~~~~~~~~~--------------------------------------- 94 (342)
T 1yfq_A 57 -HPLLCCNFID--NTDLQIYVGTVQGEILKVDLIGSPSFQA--------------------------------------- 94 (342)
T ss_dssp -SCEEEEEEEE--SSSEEEEEEETTSCEEEECSSSSSSEEE---------------------------------------
T ss_pred -CceEEEEECC--CCCcEEEEEcCCCeEEEEEeccCCceEe---------------------------------------
Confidence 8899999965 578 8999999999999999 7654211
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeecc--CcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCC--
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHA--HDYHINSISNNSDGETFISA-DDLRINLWNLEI-- 264 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~-- 264 (515)
+.+ |...|.+++|+| +..|+++ .|+.|++||+++
T Consensus 95 ----------------------------------------~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~ 133 (342)
T 1yfq_A 95 ----------------------------------------LTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYG 133 (342)
T ss_dssp ----------------------------------------CBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHT
T ss_pred ----------------------------------------ccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccc
Confidence 234 788999999999 9999998 899999999985
Q ss_pred -------CCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCc-ccccccccceeeeccCCCccc
Q 010206 265 -------SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ-SALCDTHSKLFEEQEAPGTRS 336 (515)
Q Consensus 265 -------~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~ 336 (515)
.+... .+. |...|.+++|+|++ +++++.|+.|++||+++ +..... .
T Consensus 134 ~~~~~~~~~~~~--------~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~--------------~ 187 (342)
T 1yfq_A 134 DGVIAVKNLNSN--------NTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGT--------------I 187 (342)
T ss_dssp TBCEEEEESCSS--------SSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCE--------------E
T ss_pred cccccccCCeee--------EEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccce--------------e
Confidence 33221 233 78899999999874 89999999999999987 442110 0
Q ss_pred cccccccceeEEEEcc-CCCEEEEEcC-CeEEEEEeeCC-----CCCeeeEeeeccccccccccccCCCccceeeEEEcC
Q 010206 337 FFTEIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMD-----SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 409 (515)
Q Consensus 337 ~~~~~~~~i~~~~~s~-~~~~l~s~~~-~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 409 (515)
....|...+.+++|+| +++++++++. |.|++|+++.. .+....+..|..... ..+....|.+++|+|
T Consensus 188 ~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~~~s~ 261 (342)
T 1yfq_A 188 EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK------DTNLAYPVNSIEFSP 261 (342)
T ss_dssp EECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTT------CCSSCCCEEEEEECT
T ss_pred eecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccccc------ccccceeEEEEEEcC
Confidence 1234557899999999 9999999876 99999999874 277778877754210 001112367999999
Q ss_pred CCCEEEEecCCCcEEEEecCCCCcceeeeccC-CCceeeEEECCCCCeeEeecCCCe-EEE
Q 010206 410 DGGRVATGSYSNLFRVFGCSEGSAESTTLEAS-KNPMRRQVQTPSRPSRPLGSLSGV-VRR 468 (515)
Q Consensus 410 ~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d~~-v~l 468 (515)
++++|++++.||.|++||+.++ .....+..| ..+|.+++ |++++|++++.||. .+.
T Consensus 262 ~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~ 319 (342)
T 1yfq_A 262 RHKFLYTAGSDGIISCWNLQTR-KKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTN 319 (342)
T ss_dssp TTCCEEEEETTSCEEEEETTTT-EEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHC
T ss_pred CCCEEEEecCCceEEEEcCccH-hHhhhhhcccCCCceEec--CCCCeEEEEecCCccccc
Confidence 9999999999999999999987 455788888 99999999 99999999999998 443
No 73
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=4.9e-34 Score=262.91 Aligned_cols=283 Identities=16% Similarity=0.241 Sum_probs=220.7
Q ss_pred eEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEE
Q 010206 38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117 (515)
Q Consensus 38 v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~ 117 (515)
.++|+||+++ +||+|. |++|+|||+.+++.. ....+.+|. ..|++
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~---------------------~~~~~~~~~------------~~V~~ 72 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDIL---------------------QLLQMEQPG------------EYISS 72 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEE---------------------EEEECCSTT------------CCEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEE---------------------EEEEecCCC------------CeEEE
Confidence 5789999986 788774 899999999887643 122345666 78999
Q ss_pred EEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCC
Q 010206 118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS 197 (515)
Q Consensus 118 l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 197 (515)
++| ++++++|++|+.|++|++||+++++.......+... ...+++++..+
T Consensus 73 v~~--~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~-----------------~~~~~~~~~~l----------- 122 (318)
T 4ggc_A 73 VAW--IKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR-----------------VGSLSWNSYIL----------- 122 (318)
T ss_dssp EEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC-----------------EEEEEEETTEE-----------
T ss_pred EEE--CCCCCEEEEEECCCcEEEeecCCceeEEEecCccce-----------------EEEeecCCCEE-----------
Confidence 999 556789999999999999999999877665544221 34566777777
Q ss_pred CCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccC
Q 010206 198 SFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 276 (515)
Q Consensus 198 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~ 276 (515)
++++.++.+++|+ ..... .....+.+|...+..+.+++++++|+++ .|+.|++||+++++......
T Consensus 123 -~s~~~~~~~~~~~--~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---- 189 (318)
T 4ggc_A 123 -SSGSRSGHIHHHD--VRVAE------HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL---- 189 (318)
T ss_dssp -EEEETTSEEEEEE--TTSSS------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCS----
T ss_pred -EEEecCCceEeee--cCCCc------eeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccce----
Confidence 8999999999988 22211 1222247899999999999999999998 89999999998765433211
Q ss_pred ccccccCCceEEEEEecCCCcEE--EEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCC
Q 010206 277 ANMEDLTEVITSAEFHPTHCNML--AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 354 (515)
Q Consensus 277 ~~~~~~~~~i~~i~~~p~~~~~l--~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 354 (515)
.....+...|.+++++|++...+ ++++.++.|++||.+...... ...+...+..+.|+|++
T Consensus 190 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~-----------------~~~~~~~v~~~~~~~~~ 252 (318)
T 4ggc_A 190 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS-----------------AVDAHSQVCSILWSPHY 252 (318)
T ss_dssp EEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE-----------------EEECSSCEEEEEEETTT
T ss_pred eeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc-----------------cccceeeeeeeeecccc
Confidence 13455788899999999875554 356678999999998765321 12234679999999999
Q ss_pred CEEEEEc---CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCC
Q 010206 355 RHILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 355 ~~l~s~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
..+++++ ++.|++||+.+ ++++.++.+|... |++++|+|||++|+||+.||+|+|||+.+.
T Consensus 253 ~~~~~~sg~~d~~i~iwd~~~-~~~~~~l~gH~~~---------------V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 253 KELISGHGFAQNQLVIWKYPT-MAKVAELKGHTSR---------------VLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp TEEEEEECTTTCCEEEEETTT-CCEEEEECCCSSC---------------EEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred cceEEEEEcCCCEEEEEECCC-CcEEEEEcCCCCC---------------EEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 9887643 49999999997 8899999988765 669999999999999999999999999754
No 74
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-34 Score=261.32 Aligned_cols=274 Identities=16% Similarity=0.185 Sum_probs=222.0
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.+.|++++| |++++|++|+.||.|++||+.+++ ....+..|.
T Consensus 14 l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~-----------------------~~~~~~~~~---------- 59 (313)
T 3odt_A 14 LKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW-----------------------LGTVVYTGQ---------- 59 (313)
T ss_dssp ECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE-----------------------EEEEEEECS----------
T ss_pred hhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE-----------------------EEEEeecCC----------
Confidence 4589999999999 999999999999999999987654 234556676
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|.+++|+| ++.++++++.|+.|++|++.......
T Consensus 60 --~~v~~~~~~~--~~~~l~~~~~dg~i~~~~~~~~~~~~---------------------------------------- 95 (313)
T 3odt_A 60 --GFLNSVCYDS--EKELLLFGGKDTMINGVPLFATSGED---------------------------------------- 95 (313)
T ss_dssp --SCEEEEEEET--TTTEEEEEETTSCEEEEETTCCTTSC----------------------------------------
T ss_pred --ccEEEEEECC--CCCEEEEecCCCeEEEEEeeecCCCC----------------------------------------
Confidence 8899999954 67799999999999999987532000
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
.... +.+|...|.+++| +++.|+++ .|+.|++||. .+...
T Consensus 96 ----------------------------------~~~~-~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~--~~~~~ 136 (313)
T 3odt_A 96 ----------------------------------PLYT-LIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE--GSLVY 136 (313)
T ss_dssp ----------------------------------C-CE-ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET--TEEEE
T ss_pred ----------------------------------cccc-hhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC--CcEEE
Confidence 0001 3578889999999 57788888 8999999992 22221
Q ss_pred ceecccCccccccCCceEEEEEec-CCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccc-cccceeE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE-IIASISD 347 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~ 347 (515)
.+..|...+.+++|.| ++ ..+++++.|+.|++||..... .. +.. |...+.+
T Consensus 137 --------~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~------~~------------~~~~~~~~i~~ 189 (313)
T 3odt_A 137 --------NLQAHNASVWDAKVVSFSE-NKFLTASADKTIKLWQNDKVI------KT------------FSGIHNDVVRH 189 (313)
T ss_dssp --------EEECCSSCEEEEEEEETTT-TEEEEEETTSCEEEEETTEEE------EE------------ECSSCSSCEEE
T ss_pred --------ecccCCCceeEEEEccCCC-CEEEEEECCCCEEEEecCceE------EE------------EeccCcccEEE
Confidence 4567899999999998 66 899999999999999943321 11 222 5678999
Q ss_pred EEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEE
Q 010206 348 IKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 426 (515)
Q Consensus 348 ~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw 426 (515)
++|+|+++ +++++ ++.|++||+++ ++++..+..|... +++++|+|++ .|++++.||.|++|
T Consensus 190 ~~~~~~~~-~~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~---------------i~~~~~~~~~-~l~~~~~dg~v~iw 251 (313)
T 3odt_A 190 LAVVDDGH-FISCSNDGLIKLVDMHT-GDVLRTYEGHESF---------------VYCIKLLPNG-DIVSCGEDRTVRIW 251 (313)
T ss_dssp EEEEETTE-EEEEETTSEEEEEETTT-CCEEEEEECCSSC---------------EEEEEECTTS-CEEEEETTSEEEEE
T ss_pred EEEcCCCe-EEEccCCCeEEEEECCc-hhhhhhhhcCCce---------------EEEEEEecCC-CEEEEecCCEEEEE
Confidence 99999998 66655 59999999986 7888888877654 5699999999 58899999999999
Q ss_pred ecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 427 GCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
|+.++ .....+..|..++..++++|+++ +++++.||.|++
T Consensus 252 d~~~~-~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i 291 (313)
T 3odt_A 252 SKENG-SLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRI 291 (313)
T ss_dssp CTTTC-CEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEE
T ss_pred ECCCC-ceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEE
Confidence 99987 45578899999999999999998 667899999999
No 75
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.2e-33 Score=267.51 Aligned_cols=291 Identities=11% Similarity=0.143 Sum_probs=217.2
Q ss_pred cceeeeecccCCCcccccccccccceeEEEEEeecCCC-cEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCc
Q 010206 89 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS-ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPI 167 (515)
Q Consensus 89 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 167 (515)
.+.....+.+|. ..|++++|+| ++ .+|++++.|+.|++||+.+++......
T Consensus 62 ~~~~~~~~~~h~------------~~v~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------- 113 (383)
T 3ei3_B 62 SYKLHRTASPFD------------RRVTSLEWHP--THPTTVAVGSKGGDIILWDYDVQNKTSFIQ-------------- 113 (383)
T ss_dssp TCEEEEEECCCS------------SCEEEEEECS--SCTTEEEEEEBTSCEEEEETTSTTCEEEEC--------------
T ss_pred ccceEEeccCCC------------CCEEEEEECC--CCCCEEEEEcCCCeEEEEeCCCcccceeee--------------
Confidence 344556677787 8899999965 45 699999999999999998765322211
Q ss_pred cCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC-CC
Q 010206 168 FGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DG 246 (515)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 246 (515)
..+|...|.+++|+| ++
T Consensus 114 --------------------------------------------------------------~~~h~~~v~~~~~~~~~~ 131 (383)
T 3ei3_B 114 --------------------------------------------------------------GMGPGDAITGMKFNQFNT 131 (383)
T ss_dssp --------------------------------------------------------------CCSTTCBEEEEEEETTEE
T ss_pred --------------------------------------------------------------cCCcCCceeEEEeCCCCC
Confidence 236889999999999 77
Q ss_pred CEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccce
Q 010206 247 ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL 325 (515)
Q Consensus 247 ~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 325 (515)
++|+++ .|+.|++||++. .....+. ....|...|.+++|+|++ .+|++|+.|+.|++||++. +.. .
T Consensus 132 ~~l~s~~~d~~i~iwd~~~-~~~~~~~-----~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~-~~~----~- 198 (383)
T 3ei3_B 132 NQLFVSSIRGATTLRDFSG-SVIQVFA-----KTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGLDG-HEI----F- 198 (383)
T ss_dssp EEEEEEETTTEEEEEETTS-CEEEEEE-----CCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEETTS-CEE----E-
T ss_pred CEEEEEeCCCEEEEEECCC-CceEEEe-----ccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEECCC-CEE----E-
Confidence 899988 899999999985 2222111 223456889999999998 8999999999999999943 221 1
Q ss_pred eeeccCCCccccccccccceeEEEEccCCC-EEEEEcC-CeEEEEEeeCC---CCCeeeEeeeccccccccccccCCCcc
Q 010206 326 FEEQEAPGTRSFFTEIIASISDIKFARNGR-HILSRDY-MTLKLWDINMD---SGPVATFQVHEHLRPKLCDLYENDSIF 400 (515)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~~-~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (515)
.+.+|...|.+++|+|+++ +|++++. +.|++||+++. ..++..+ .|...
T Consensus 199 -----------~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~-------------- 252 (383)
T 3ei3_B 199 -----------KEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKP-------------- 252 (383)
T ss_dssp -----------EEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSC--------------
T ss_pred -----------EeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCc--------------
Confidence 1456778999999999999 8888765 99999999862 2233333 44433
Q ss_pred ceeeEEEcC-CCCEEEEecCCCcEEEEecCCCCcceeeeccCC-------C----------ceeeEEECCCCCeeEeecC
Q 010206 401 DKFECCLSG-DGGRVATGSYSNLFRVFGCSEGSAESTTLEASK-------N----------PMRRQVQTPSRPSRPLGSL 462 (515)
Q Consensus 401 ~v~~~~~s~-~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~-------~----------~v~~~~~~~~~~~l~s~~~ 462 (515)
|.+++|+| ++++|++++.|+.|++||++++... ..+..|. . .+..++++|++++ +++.
T Consensus 253 -v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~ 328 (383)
T 3ei3_B 253 -VNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKP-DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLND 328 (383)
T ss_dssp -EEEEEECTTTSCEEEEEESSSEEEEEETTBTTSC-SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTC
T ss_pred -eEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccc-cccccccccccccccceEEeccCCCCceEEEecCCccc--ccCC
Confidence 56999999 9999999999999999999987443 4444332 2 2334677788877 8889
Q ss_pred CCeEEEecCCCCCccccCCccc--cccCCeeEEEEcCCCCEEEEEcCCcEEEEeC
Q 010206 463 SGVVRRVKGADNSALDANGNAF--DFSMKLLHLAWHPSENSIACAASNSLYMYYA 515 (515)
Q Consensus 463 d~~v~l~~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~la~~~~~~~~i~~~ 515 (515)
|+.|++++-... +...... .+...+..++|+|++++|++++++.+.+|+.
T Consensus 329 d~~i~iwd~~~~---~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~ 380 (383)
T 3ei3_B 329 KRTIDIYDANSG---GLVHQLRDPNAAGIISLNKFSPTGDVLASGMGFNILIWNR 380 (383)
T ss_dssp CCCEEEEETTTC---CEEEEECBTTBCSCCCEEEECTTSSEEEEEETTEEEEEEC
T ss_pred CCeEEEEecCCC---ceeeeecCCCCCceEEEEEEecCccEEEEecCCcEEEEec
Confidence 999999432211 1111222 2456788889999999999999888999974
No 76
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.4e-34 Score=278.16 Aligned_cols=282 Identities=15% Similarity=0.214 Sum_probs=202.5
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|++|+|+|.. +.+|++|+.||+|+|||+.+++......
T Consensus 120 ~~V~~l~~~P~~-~~~lasGs~dg~i~lWd~~~~~~~~~~~--------------------------------------- 159 (435)
T 4e54_B 120 RRATSLAWHPTH-PSTVAVGSKGGDIMLWNFGIKDKPTFIK--------------------------------------- 159 (435)
T ss_dssp SCEEEEEECSSC-TTCEEEEETTSCEEEECSSCCSCCEEEC---------------------------------------
T ss_pred CCEEEEEEeCCC-CCEEEEEeCCCEEEEEECCCCCceeEEE---------------------------------------
Confidence 789999998743 4589999999999999987654211110
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC-CCCEEEEe-CCCcEEEEeCCCCCcccc
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFN 270 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~ 270 (515)
..+|...|++++|+| ++++|+++ .|++|++||+++.... .
T Consensus 160 -------------------------------------~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~-~ 201 (435)
T 4e54_B 160 -------------------------------------GIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR-V 201 (435)
T ss_dssp -------------------------------------CCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE-E
T ss_pred -------------------------------------ccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee-E
Confidence 257899999999998 68899998 8999999999754321 1
Q ss_pred eecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEE
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 350 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (515)
+. ....+...+.+++|+|++ .+|++|+.||.|++||++.... ..+.+|...|.+++|
T Consensus 202 ~~-----~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~~~-----------------~~~~~h~~~v~~v~~ 258 (435)
T 4e54_B 202 FA-----SSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGKEL-----------------WNLRMHKKKVTHVAL 258 (435)
T ss_dssp EE-----CCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSCBC-----------------CCSBCCSSCEEEEEE
T ss_pred Ee-----ccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCccee-----------------EEEecccceEEeeee
Confidence 11 223345567899999998 8999999999999999865432 125677889999999
Q ss_pred ccCCC-EEEEEc-CCeEEEEEeeCCCCCeeeE---eeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEE
Q 010206 351 ARNGR-HILSRD-YMTLKLWDINMDSGPVATF---QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 425 (515)
Q Consensus 351 s~~~~-~l~s~~-~~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~i 425 (515)
+|++. ++++|+ |+.|++||+++ .+....+ .+|... |++++|+|+|++|++++.||.|++
T Consensus 259 ~p~~~~~~~s~s~d~~v~iwd~~~-~~~~~~~~~~~~h~~~---------------v~~~~~spdg~~l~s~~~D~~i~i 322 (435)
T 4e54_B 259 NPCCDWFLATASVDQTVKIWDLRQ-VRGKASFLYSLPHRHP---------------VNAACFSPDGARLLTTDQKSEIRV 322 (435)
T ss_dssp CTTCSSEEEEEETTSBCCEEETTT-CCSSSCCSBCCBCSSC---------------EEECCBCTTSSEEEEEESSSCEEE
T ss_pred cCCCceEEEEecCcceeeEEeccc-ccccceEEEeeecccc---------------ccceeECCCCCeeEEEcCCCEEEE
Confidence 99876 566776 59999999986 4333222 234332 569999999999999999999999
Q ss_pred EecCCCCcceeeeccCCC------ceeeEEECCCCCeeEeec------------CCCeEEEecCCCCCccccCCcc-ccc
Q 010206 426 FGCSEGSAESTTLEASKN------PMRRQVQTPSRPSRPLGS------------LSGVVRRVKGADNSALDANGNA-FDF 486 (515)
Q Consensus 426 w~~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~s~~------------~d~~v~l~~~~~~~~~~~~~~~-~~~ 486 (515)
||+.++... ..+..|.. ......++|++..+++++ .++.|++++.... ...... ..|
T Consensus 323 wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g---~~~~~l~~~~ 398 (435)
T 4e54_B 323 YSASQWDCP-LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG---KMMCQLYDPE 398 (435)
T ss_dssp EESSSSSSE-EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC---CEEEEECCSS
T ss_pred EECCCCccc-eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC---cEEEEEeCCC
Confidence 999987443 34443322 122344555555544443 3356777432221 111121 246
Q ss_pred cCCeeEE-EEcCCCCEEEEEcCCcEEEEeC
Q 010206 487 SMKLLHL-AWHPSENSIACAASNSLYMYYA 515 (515)
Q Consensus 487 ~~~i~~~-~~s~~~~~la~~~~~~~~i~~~ 515 (515)
...|.++ +|+|+|++||+|+++.+.||+.
T Consensus 399 ~~~v~s~~~fspdg~~lasg~d~~i~iW~~ 428 (435)
T 4e54_B 399 SSGISSLNEFNPMGDTLASAMGYHILIWSQ 428 (435)
T ss_dssp CCCCCCEEEECTTSSCEEEECSSEEEECCC
T ss_pred CCcEEEEEEECCCCCEEEEEcCCcEEEEEC
Confidence 7778887 6999999999999999999974
No 77
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.4e-34 Score=272.72 Aligned_cols=305 Identities=10% Similarity=0.099 Sum_probs=227.3
Q ss_pred eeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCC
Q 010206 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (515)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (515)
....+.+|. ..|++++|+| .+|++++.||+|++|++.+++....
T Consensus 8 ~~~~~~~h~------------~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~-------------------- 51 (397)
T 1sq9_A 8 TANAGKAHD------------ADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENP-------------------- 51 (397)
T ss_dssp EEEESSCSS------------SCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCG--------------------
T ss_pred hhhhhhhhh------------cCeEEEEecC----CeEEEEcCCCEEEEEECCCcccccC--------------------
Confidence 345677888 8999999954 4999999999999999987541000
Q ss_pred CcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC----C-
Q 010206 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD----G- 246 (515)
Q Consensus 172 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~- 246 (515)
...... +.+|...|.+++|+|+ +
T Consensus 52 ---------------------------------------------------~~~~~~-~~~h~~~v~~~~~~~~~~~~g~ 79 (397)
T 1sq9_A 52 ---------------------------------------------------KDKSYS-HFVHKSGLHHVDVLQAIERDAF 79 (397)
T ss_dssp ---------------------------------------------------GGGEEE-EECCTTCEEEEEEEEEEETTTE
T ss_pred ---------------------------------------------------CCcceE-EecCCCcEEEEEEecccccCCc
Confidence 000111 3578899999999999 9
Q ss_pred --CEEEEe-CCCcEEEEeCCCCCcccceecccCcccccc-----CCceEEEEEe----cCCCcE-EEEEecCCeEEEEec
Q 010206 247 --ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDL-----TEVITSAEFH----PTHCNM-LAYSSSKGSIRLIDM 313 (515)
Q Consensus 247 --~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~~~i~~i~~~----p~~~~~-l~~~~~dg~i~~wd~ 313 (515)
++|+++ .|+.|++||+.+.+...... ...+..| ...|.+++|+ |++ .. |++++.||.|++||+
T Consensus 80 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~ 155 (397)
T 1sq9_A 80 ELCLVATTSFSGDLLFYRITREDETKKVI---FEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWKF 155 (397)
T ss_dssp EEEEEEEEETTSCEEEEEEEECTTTCCEE---EEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEE
T ss_pred cccEEEEEcCCCCEEEEEccCCccccccc---ceeecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeC
Confidence 999998 89999999998766411100 0144556 5899999999 998 78 999999999999999
Q ss_pred Cc------cccccc-ccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEee---
Q 010206 314 RQ------SALCDT-HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV--- 382 (515)
Q Consensus 314 ~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~--- 382 (515)
++ ++...- ....+... ......|...|.+++|+|++ ++++++. +.|++||+++ .+++..+..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~ 228 (397)
T 1sq9_A 156 HPFADESNSLTLNWSPTLELQGT-----VESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST-LRPLYNFESQHS 228 (397)
T ss_dssp ESSSSHHHHTTTCCCCEEEEEEE-----ECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT-TEEEEEEECCC-
T ss_pred CccccccccceeeccCcceeeee-----eccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCC-CceeEEEecccc
Confidence 88 543220 00011110 00013366889999999999 9998876 9999999986 777777776
Q ss_pred e---ccccccccccccCCCccceeeEEEcCCCCEEEEecCC---CcEEEEecCCCCcceeeecc-------------CCC
Q 010206 383 H---EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEA-------------SKN 443 (515)
Q Consensus 383 ~---~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d---g~i~iw~~~~~~~~~~~~~~-------------~~~ 443 (515)
| ... +.+++|+|++++|++++.| |.|++||+.++ .....+.. |..
T Consensus 229 h~~~~~~---------------i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 292 (397)
T 1sq9_A 229 MINNSNS---------------IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG-ERIGSLSVPTHSSQASLGEFAHSS 292 (397)
T ss_dssp --CCCCC---------------EEEEEECSSTTEEEEEEEETTEEEEEEEETTTC-CEEEEECBC--------CCBSBSS
T ss_pred ccccCCc---------------cceEEECCCCCEEEEEecCCCCceEEEEECCCC-cccceeccCcccccccccccccCC
Confidence 5 433 5699999999999999999 99999999987 45577887 999
Q ss_pred ceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccc------cc---------------cCCeeEEEEcCCC---
Q 010206 444 PMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAF------DF---------------SMKLLHLAWHPSE--- 499 (515)
Q Consensus 444 ~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~------~~---------------~~~i~~~~~s~~~--- 499 (515)
++.+++|+|++++|++++.|+.|++++-... +...... .| ...|.+++|+|++
T Consensus 293 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~ 369 (397)
T 1sq9_A 293 WVMSLSFNDSGETLCSAGWDGKLRFWDVKTK---ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRS 369 (397)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSB
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEcCCC---ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccc
Confidence 9999999999999999999999999332211 1111112 34 8899999999998
Q ss_pred -------CEEEEEcCC-cEEEEe
Q 010206 500 -------NSIACAASN-SLYMYY 514 (515)
Q Consensus 500 -------~~la~~~~~-~~~i~~ 514 (515)
++|++++.+ .+.+|+
T Consensus 370 ~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 370 GMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp STTCTTSCEEEEEETTTEEEEEE
T ss_pred cccccccceEEEecCCCcEEEEE
Confidence 789988755 488886
No 78
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.7e-34 Score=271.58 Aligned_cols=305 Identities=12% Similarity=0.111 Sum_probs=220.3
Q ss_pred ceeEEEEEeec--CCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 113 EKINKIRWCQS--ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 113 ~~v~~l~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|++++|+|. .....+++++.++.|++||+.+++........
T Consensus 19 ~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~----------------------------------- 63 (366)
T 3k26_A 19 QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSY----------------------------------- 63 (366)
T ss_dssp SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEE-----------------------------------
T ss_pred CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeec-----------------------------------
Confidence 88999999763 12446777777889999999876533221110
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC----CCEEEEe-CCCcEEEEeCCCC
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD----GETFISA-DDLRINLWNLEIS 265 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~s~-~d~~i~iwd~~~~ 265 (515)
....|...|.+++|+|+ +++|+++ .|+.|++||+.+.
T Consensus 64 --------------------------------------~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~ 105 (366)
T 3k26_A 64 --------------------------------------VDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM 105 (366)
T ss_dssp --------------------------------------ECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC
T ss_pred --------------------------------------cccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc
Confidence 01246788999999998 6689988 8999999999876
Q ss_pred CcccceecccCccccccCCceEEEEEec-CCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccc
Q 010206 266 NQSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 344 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (515)
+... .+.+|...|.+++|+| ++ .+|++++.||.|++||+++++.... +. .+.+|...
T Consensus 106 ~~~~--------~~~~~~~~i~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~----~~---------~~~~~~~~ 163 (366)
T 3k26_A 106 QCIK--------HYVGHGNAINELKFHPRDP-NLLLSVSKDHALRLWNIQTDTLVAI----FG---------GVEGHRDE 163 (366)
T ss_dssp CEEE--------EEESCCSCEEEEEECSSCT-TEEEEEETTSCEEEEETTTTEEEEE----EC---------STTSCSSC
T ss_pred eEee--------eecCCCCcEEEEEECCCCC-CEEEEEeCCCeEEEEEeecCeEEEE----ec---------ccccccCc
Confidence 5442 4567999999999999 66 8999999999999999988764321 11 02467789
Q ss_pred eeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccccc------------ccccc-cCCCccceeeEEEcCC
Q 010206 345 ISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPK------------LCDLY-ENDSIFDKFECCLSGD 410 (515)
Q Consensus 345 i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~------------~~~~~-~~~~~~~v~~~~~s~~ 410 (515)
|.+++|+|++++|++++. +.|++||+++ ++....+..+...... ..... ....-..|.+++|+
T Consensus 164 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 240 (366)
T 3k26_A 164 VLSADYDLLGEKIMSCGMDHSLKLWRINS-KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-- 240 (366)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEESCS-HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--
T ss_pred eeEEEECCCCCEEEEecCCCCEEEEECCC-CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--
Confidence 999999999999999875 9999999985 4333322210000000 00000 00011135689998
Q ss_pred CCEEEEecCCCcEEEEecCCCCc-------------ceeeeccCCCceeeEEECCC--CCeeEeecCCCeEEEecCCCCC
Q 010206 411 GGRVATGSYSNLFRVFGCSEGSA-------------ESTTLEASKNPMRRQVQTPS--RPSRPLGSLSGVVRRVKGADNS 475 (515)
Q Consensus 411 ~~~l~s~s~dg~i~iw~~~~~~~-------------~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~d~~v~l~~~~~~~ 475 (515)
+++|++++.|+.|++||+.++.. ....+..|..++..++++|+ +++|++++.||.|++++-....
T Consensus 241 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~ 320 (366)
T 3k26_A 241 GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED 320 (366)
T ss_dssp TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence 77999999999999999987643 24667789999999999999 9999999999999993322211
Q ss_pred ccc-cCCccccc--cCCeeEEEEcCCCCEEEEEcCCc-EEEEeC
Q 010206 476 ALD-ANGNAFDF--SMKLLHLAWHPSENSIACAASNS-LYMYYA 515 (515)
Q Consensus 476 ~~~-~~~~~~~~--~~~i~~~~~s~~~~~la~~~~~~-~~i~~~ 515 (515)
... .......| ...|.+++|+|++++|++++.++ +.+|+.
T Consensus 321 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 321 PHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp GGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred CccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 000 11122234 68999999999999999888664 888873
No 79
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=6.4e-35 Score=273.01 Aligned_cols=298 Identities=11% Similarity=0.057 Sum_probs=204.3
Q ss_pred ceeEEEEEeecCCCcEEEeeeCC-------CeEEEEEccCCeeE------EEeeccCCcccCCCCCCccCCCCcCCCcee
Q 010206 113 EKINKIRWCQSANSALYLLSTND-------KTIKLWKVQEKKVK------KVFDWNVHPEKAAGNGPIFGSHVSAIPKSY 179 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d-------~~i~iwd~~~~~~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 179 (515)
.+|++++|+| ++++|++|+.| +.|++|++...... .......... ... .+++
T Consensus 15 ~PV~sv~fs~--dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~----~~~---------v~s~ 79 (365)
T 4h5i_A 15 YPAYGAKFLN--NDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDN----DDS---------PTAI 79 (365)
T ss_dssp SCEEEEEEEE--TTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTT----SCC---------CCEE
T ss_pred CCEEEEEEeC--CCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCC----CCc---------eEEE
Confidence 5799999964 67789888653 36999998765321 1111111100 111 2345
Q ss_pred ecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeee--eccCcCCeEEEEecCCCCEEEEe---CC
Q 010206 180 MANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIY--AHAHDYHINSISNNSDGETFISA---DD 254 (515)
Q Consensus 180 ~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~---~d 254 (515)
++++..+.. ........+++++.++.+++|+ +...+..........+ ...+...+.+++|+|||++++++ .|
T Consensus 80 ~~~~~~~~~-g~~~~~~~l~s~~~d~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d 156 (365)
T 4h5i_A 80 DASKGIILV-GCNENSTKITQGKGNKHLRKFK--YDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVP 156 (365)
T ss_dssp EEETTEEEE-ECCCCHHHHHHTSCCCCEEEEE--EETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSS
T ss_pred EeCCCEEEE-EECCCccEEEEecCCCcEEEEE--ecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCC
Confidence 555554311 1111223446778899999999 4433322111111111 13455678999999999998753 58
Q ss_pred CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCc
Q 010206 255 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 334 (515)
Q Consensus 255 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 334 (515)
++|++||+++.+.... + .|...|.+++|+|++ +++++++.+ .+++|+..++.....
T Consensus 157 ~~i~iwd~~~~~~~~~--------~-~~~~~V~~v~fspdg-~~l~s~s~~-~~~~~~~~~~~~~~~------------- 212 (365)
T 4h5i_A 157 AIMRIIDPSDLTEKFE--------I-ETRGEVKDLHFSTDG-KVVAYITGS-SLEVISTVTGSCIAR------------- 212 (365)
T ss_dssp CEEEEEETTTTEEEEE--------E-ECSSCCCEEEECTTS-SEEEEECSS-CEEEEETTTCCEEEE-------------
T ss_pred CEEEEeECCCCcEEEE--------e-CCCCceEEEEEccCC-ceEEeccce-eEEEEEeccCcceee-------------
Confidence 9999999997765432 2 367889999999999 899988855 566666666543211
Q ss_pred cccccccccceeEEEEccCCCEEEEEc-CC----eEEEEEeeCCCCC---eeeEeeeccccccccccccCCCccceeeEE
Q 010206 335 RSFFTEIIASISDIKFARNGRHILSRD-YM----TLKLWDINMDSGP---VATFQVHEHLRPKLCDLYENDSIFDKFECC 406 (515)
Q Consensus 335 ~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~----~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 406 (515)
....+|...|.+++|+|+++++++++ ++ .+++|++...... ...+..|... |++++
T Consensus 213 -~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---------------V~~~~ 276 (365)
T 4h5i_A 213 -KTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKG---------------ITSMD 276 (365)
T ss_dssp -ECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSC---------------EEEEE
T ss_pred -eecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCC---------------eEeEE
Confidence 11345668899999999999999875 33 6888888752111 1223333322 66999
Q ss_pred EcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 407 LSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 407 ~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
|+|||++||+|+.|++|+|||+++++.+...+++|..+|++++|+|++++|+|||.|++||+
T Consensus 277 ~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrv 338 (365)
T 4h5i_A 277 VDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHI 338 (365)
T ss_dssp ECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEE
T ss_pred ECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 99999999999999999999999885444456899999999999999999999999999999
No 80
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.6e-34 Score=291.92 Aligned_cols=288 Identities=17% Similarity=0.228 Sum_probs=217.4
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|++++|+|. ++.+|++++.|++|++|++.......
T Consensus 383 ~~V~~v~~~~~-~~~~l~s~s~D~~i~~W~~~~~~~~~------------------------------------------ 419 (694)
T 3dm0_A 383 DMVTAIATPID-NADIIVSASRDKSIILWKLTKDDKAY------------------------------------------ 419 (694)
T ss_dssp SCEEEEECCTT-CCSEEEEEETTSEEEEEECCCSTTCS------------------------------------------
T ss_pred ceeEEEEecCC-CCCEEEEEeCCCcEEEEEccCCCccc------------------------------------------
Confidence 89999999653 34689999999999999987542100
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
....+ .+.+|...|.+++|+|++++|++| .|++|++||+.++....
T Consensus 420 ------------------------------~~~~~-~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~-- 466 (694)
T 3dm0_A 420 ------------------------------GVAQR-RLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTR-- 466 (694)
T ss_dssp ------------------------------CEEEE-EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE--
T ss_pred ------------------------------ccccc-eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCccee--
Confidence 00011 146899999999999999999998 89999999998765432
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
.+.+|...|.+++|+|++ ++|++|+.|+.|++||+...... .+. ....+|...|.+++|+
T Consensus 467 ------~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~~-----~~~--------~~~~~h~~~v~~~~~~ 526 (694)
T 3dm0_A 467 ------RFVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECKY-----TIS--------EGGEGHRDWVSCVRFS 526 (694)
T ss_dssp ------EEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEE-----EEC--------SSTTSCSSCEEEEEEC
T ss_pred ------EEeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCcce-----eec--------cCCCCCCCcEEEEEEe
Confidence 567899999999999998 89999999999999998654211 010 0124677899999999
Q ss_pred cCC--CEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEec
Q 010206 352 RNG--RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 428 (515)
Q Consensus 352 ~~~--~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~ 428 (515)
|++ ..|++++. +.|++||++. .+....+.+|... |++++|+|++++|++|+.||.|++||+
T Consensus 527 ~~~~~~~l~s~s~d~~v~vwd~~~-~~~~~~~~~h~~~---------------v~~v~~spdg~~l~sg~~Dg~i~iwd~ 590 (694)
T 3dm0_A 527 PNTLQPTIVSASWDKTVKVWNLSN-CKLRSTLAGHTGY---------------VSTVAVSPDGSLCASGGKDGVVLLWDL 590 (694)
T ss_dssp SCSSSCEEEEEETTSCEEEEETTT-CCEEEEECCCSSC---------------EEEEEECTTSSEEEEEETTSBCEEEET
T ss_pred CCCCcceEEEEeCCCeEEEEECCC-CcEEEEEcCCCCC---------------EEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 986 57888765 9999999986 7778888888765 569999999999999999999999999
Q ss_pred CCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCc-cccCCc---------------cccccCCeeE
Q 010206 429 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSA-LDANGN---------------AFDFSMKLLH 492 (515)
Q Consensus 429 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~-~~~~~~---------------~~~~~~~i~~ 492 (515)
.++. .+..+.. ...+.+++|+|++.++++++ |+.|++++-..... ..+... ...+...+++
T Consensus 591 ~~~~-~~~~~~~-~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (694)
T 3dm0_A 591 AEGK-KLYSLEA-NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTS 667 (694)
T ss_dssp TTTE-EEECCBC-SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEE
T ss_pred CCCc-eEEEecC-CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeee
Confidence 9874 3345543 46799999999998887775 55588832211100 000000 0011123789
Q ss_pred EEEcCCCCEEEEEcCCc-EEEEeC
Q 010206 493 LAWHPSENSIACAASNS-LYMYYA 515 (515)
Q Consensus 493 ~~~s~~~~~la~~~~~~-~~i~~~ 515 (515)
++|||||++|++++.|+ +.+|+.
T Consensus 668 l~~spdg~~l~sgs~Dg~i~iW~i 691 (694)
T 3dm0_A 668 LNWSADGSTLFSGYTDGVIRVWGI 691 (694)
T ss_dssp EEECTTSSEEEEEETTSEEEEEEC
T ss_pred EEEcCCCCEEEEEcCCCeEEEEec
Confidence 99999999999998666 788863
No 81
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.3e-34 Score=272.71 Aligned_cols=286 Identities=12% Similarity=0.220 Sum_probs=214.7
Q ss_pred ccccc--eEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeeccc-CCCcccccccc
Q 010206 33 QEVDI--ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQS-HEPEFDYLKSL 109 (515)
Q Consensus 33 ~h~~~--v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~ 109 (515)
+|.+. +.+++|++ ..+++++.||.|++|++.+++.. ..+.. |.
T Consensus 89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~-----------------------~~~~~~~~--------- 134 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVS-----------------------ALAETDES--------- 134 (401)
T ss_dssp TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEE-----------------------EEEECCTT---------
T ss_pred CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEe-----------------------EeeecCCC---------
Confidence 34443 45566665 55778889999999999877632 22222 55
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..|.+++|+ +++.+|++++.||.|++||+.+++.......+ .+.+. .+.| ++..+
T Consensus 135 ---~~v~~v~~s--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------~~~v~-------~~~~--~~~~l--- 189 (401)
T 4aez_A 135 ---TYVASVKWS--HDGSFLSVGLGNGLVDIYDVESQTKLRTMAGH--------QARVG-------CLSW--NRHVL--- 189 (401)
T ss_dssp ---CCEEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECCC--------SSCEE-------EEEE--ETTEE---
T ss_pred ---CCEEEEEEC--CCCCEEEEECCCCeEEEEECcCCeEEEEecCC--------CCceE-------EEEE--CCCEE---
Confidence 789999995 46779999999999999999988766655433 22232 4455 55666
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
++++.++.|++|| +.... ..... +.+|...|.+++|+|++++|+++ .|+.|++||+++.+..
T Consensus 190 ---------~~~~~dg~i~i~d--~~~~~-----~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 252 (401)
T 4aez_A 190 ---------SSGSRSGAIHHHD--VRIAN-----HQIGT-LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPK 252 (401)
T ss_dssp ---------EEEETTSEEEEEE--TTSSS-----CEEEE-EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEE
T ss_pred ---------EEEcCCCCEEEEe--cccCc-----ceeeE-EcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCcc
Confidence 9999999999999 33211 12222 46899999999999999999998 8999999999876544
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEe--cCCeEEEEecCcccccccccceeeeccCCCcccccccccccee
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 346 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 346 (515)
. .+..|...|.+++|+|++..++++++ .|+.|++||+++++... .+. +...|.
T Consensus 253 ~--------~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~----~~~-------------~~~~v~ 307 (401)
T 4aez_A 253 F--------TKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVN----TVD-------------AGSQVT 307 (401)
T ss_dssp E--------EECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEE----EEE-------------CSSCEE
T ss_pred E--------EecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEE----EEe-------------CCCcEE
Confidence 3 45678999999999998867888876 79999999999876432 221 336799
Q ss_pred EEEEccCCCEEEE--Ec-CCeEEEEEeeCCCCCeee--EeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCC
Q 010206 347 DIKFARNGRHILS--RD-YMTLKLWDINMDSGPVAT--FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 421 (515)
Q Consensus 347 ~~~~s~~~~~l~s--~~-~~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg 421 (515)
+++|+|+++++++ |. ++.|++||+.+ ++.... +.+|... |.+++|+|++++|++++.||
T Consensus 308 ~~~~s~~~~~l~~~~g~~dg~i~v~~~~~-~~~~~~~~~~~h~~~---------------v~~~~~s~dg~~l~s~~~dg 371 (401)
T 4aez_A 308 SLIWSPHSKEIMSTHGFPDNNLSIWSYSS-SGLTKQVDIPAHDTR---------------VLYSALSPDGRILSTAASDE 371 (401)
T ss_dssp EEEECSSSSEEEEEECTTTCEEEEEEEET-TEEEEEEEEECCSSC---------------CCEEEECTTSSEEEEECTTS
T ss_pred EEEECCCCCeEEEEeecCCCcEEEEecCC-ccceeEEEecCCCCC---------------EEEEEECCCCCEEEEEeCCC
Confidence 9999999999998 43 49999999986 444433 3445433 45899999999999999999
Q ss_pred cEEEEecCCCCcce
Q 010206 422 LFRVFGCSEGSAES 435 (515)
Q Consensus 422 ~i~iw~~~~~~~~~ 435 (515)
.|++|++.+++.+.
T Consensus 372 ~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 372 NLKFWRVYDGDHVK 385 (401)
T ss_dssp EEEEEECCC-----
T ss_pred cEEEEECCCCcccc
Confidence 99999999875443
No 82
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.4e-33 Score=256.66 Aligned_cols=241 Identities=17% Similarity=0.188 Sum_probs=191.7
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|++++| ++++++|++++.|++|++||+.......
T Consensus 10 ~~V~~~~~--s~~g~~las~s~D~~v~iw~~~~~~~~~------------------------------------------ 45 (297)
T 2pm7_B 10 EMIHDAVM--DYYGKRMATCSSDKTIKIFEVEGETHKL------------------------------------------ 45 (297)
T ss_dssp SCEEEEEE--CTTSSEEEEEETTSCEEEEEBCSSCBCC------------------------------------------
T ss_pred CceEEEEE--CCCCCEEEEEeCCCEEEEEecCCCCcEE------------------------------------------
Confidence 88999999 5678899999999999999986432000
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC--CCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
... +.+|...|.+++|+++ +++|+++ .|++|++||+++++...
T Consensus 46 ---------------------------------~~~-l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~ 91 (297)
T 2pm7_B 46 ---------------------------------IDT-LTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQ 91 (297)
T ss_dssp ---------------------------------CEE-ECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCC
T ss_pred ---------------------------------EEE-EccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEE
Confidence 001 4689999999999864 8899998 89999999998654211
Q ss_pred ceecccCccccccCCceEEEEEecC--CCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 347 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (515)
. ..+.+|...|.+++|+|+ + .+|++++.|+.|++||++++.... ...+.+|...|.+
T Consensus 92 ~------~~~~~h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~~~~~~--------------~~~~~~h~~~v~~ 150 (297)
T 2pm7_B 92 I------AVHAVHSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKENGTTS--------------PIIIDAHAIGVNS 150 (297)
T ss_dssp C------EEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCSSSCBC--------------CEEEECCSSCEEE
T ss_pred E------EEeecCCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecCCCcee--------------eeeeecccCccce
Confidence 1 145678999999999997 6 799999999999999998753211 1124567789999
Q ss_pred EEEccC-------------CCEEEEEcC-CeEEEEEeeCCCC----CeeeEeeeccccccccccccCCCccceeeEEEcC
Q 010206 348 IKFARN-------------GRHILSRDY-MTLKLWDINMDSG----PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 409 (515)
Q Consensus 348 ~~~s~~-------------~~~l~s~~~-~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 409 (515)
++|+|+ +++|++|+. ++|++||++. .+ ....+.+|... |.+++|+|
T Consensus 151 ~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~-~~~~~~~~~~l~~H~~~---------------V~~v~~sp 214 (297)
T 2pm7_B 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS-DAQTYVLESTLEGHSDW---------------VRDVAWSP 214 (297)
T ss_dssp EEECCCC------------CCEEEEEETTSCEEEEEEET-TTTEEEEEEEECCCSSC---------------EEEEEECC
T ss_pred EeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcC-CCceEEEEEEecCCCCc---------------eEEEEECC
Confidence 999997 578998865 9999999986 44 34566667654 56999999
Q ss_pred CC---CEEEEecCCCcEEEEecCCCCc--ceeee--ccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 410 DG---GRVATGSYSNLFRVFGCSEGSA--ESTTL--EASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 410 ~~---~~l~s~s~dg~i~iw~~~~~~~--~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
++ ++|++++.|++|++||+++... ....+ ..|...+.+++|+|++++|++++.|+.|++
T Consensus 215 ~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~l 280 (297)
T 2pm7_B 215 TVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 280 (297)
T ss_dssp CCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEE
T ss_pred CCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEE
Confidence 95 8999999999999999986431 11233 567889999999999999999999999999
No 83
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.4e-33 Score=266.01 Aligned_cols=288 Identities=10% Similarity=0.138 Sum_probs=222.5
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|++++|+ +++++|++++.|+.|++||+.+++......
T Consensus 9 ~~i~~~~~s--~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~--------------------------------------- 47 (372)
T 1k8k_C 9 EPISCHAWN--KDRTQIAICPNNHEVHIYEKSGNKWVQVHE--------------------------------------- 47 (372)
T ss_dssp SCCCEEEEC--TTSSEEEEECSSSEEEEEEEETTEEEEEEE---------------------------------------
T ss_pred CCeEEEEEC--CCCCEEEEEeCCCEEEEEeCCCCcEEeeee---------------------------------------
Confidence 789999995 567799999999999999998765211111
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
+.+|...|.+++|+|++++|+++ .|+.|++||+++.+.....
T Consensus 48 -------------------------------------~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 90 (372)
T 1k8k_C 48 -------------------------------------LKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL 90 (372)
T ss_dssp -------------------------------------EECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEE
T ss_pred -------------------------------------ecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeE
Confidence 34688899999999999999998 8999999999766432211
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
.+..|...|.+++|+|++ ++|++++.|+.|++||++.+.... .. .....+|...|.+++|+
T Consensus 91 ------~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~----~~--------~~~~~~~~~~i~~~~~~ 151 (372)
T 1k8k_C 91 ------VILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWW----VC--------KHIKKPIRSTVLSLDWH 151 (372)
T ss_dssp ------ECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEE----EE--------EEECTTCCSCEEEEEEC
T ss_pred ------EeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcce----ee--------eeeecccCCCeeEEEEc
Confidence 345688999999999998 899999999999999998765210 00 01124567899999999
Q ss_pred cCCCEEEEEcC-CeEEEEEeeC-----------------CCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCE
Q 010206 352 RNGRHILSRDY-MTLKLWDINM-----------------DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 413 (515)
Q Consensus 352 ~~~~~l~s~~~-~~i~iwd~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 413 (515)
|++++|++++. +.|++||+.. .++++..+..|... +.+++|+|++++
T Consensus 152 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~ 216 (372)
T 1k8k_C 152 PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW---------------VHGVCFSANGSR 216 (372)
T ss_dssp TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC---------------EEEEEECSSSSE
T ss_pred CCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCe---------------EEEEEECCCCCE
Confidence 99999999875 9999999742 13445555444433 569999999999
Q ss_pred EEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCC--C-----------------
Q 010206 414 VATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGAD--N----------------- 474 (515)
Q Consensus 414 l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~--~----------------- 474 (515)
|++++.||.|++||++++ .....+..|..++..++++|++++++++ .|+.+++++... .
T Consensus 217 l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (372)
T 1k8k_C 217 VAWVSHDSTVCLADADKK-MAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQR 294 (372)
T ss_dssp EEEEETTTEEEEEEGGGT-TEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC------
T ss_pred EEEEeCCCEEEEEECCCC-ceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhh
Confidence 999999999999999987 4557889999999999999999999888 899999833221 0
Q ss_pred ------------CccccC------Ccc-ccccCCeeEEEEc-CCC---CEEEEEcCCc-EEEEe
Q 010206 475 ------------SALDAN------GNA-FDFSMKLLHLAWH-PSE---NSIACAASNS-LYMYY 514 (515)
Q Consensus 475 ------------~~~~~~------~~~-~~~~~~i~~~~~s-~~~---~~la~~~~~~-~~i~~ 514 (515)
...... ... .+|...|++++|+ ++| ++|++++.|+ +.+|+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 295 GLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp --CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred hcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 000000 122 3789999999977 666 8999888665 88886
No 84
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.7e-33 Score=267.65 Aligned_cols=282 Identities=15% Similarity=0.183 Sum_probs=218.3
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccccee
Q 010206 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (515)
Q Consensus 36 ~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (515)
..+....|+|++++||+|+.||.|++||+.+++ ....+.+|. ..|
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------------~~~~~~~h~------------~~v 142 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL-----------------------QREIDQAHV------------SEI 142 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE-----------------------EEEETTSSS------------SCE
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc-----------------------eeeeccccc------------Ccc
Confidence 556666889999999999999999999987655 334567787 889
Q ss_pred EEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCC
Q 010206 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (515)
Q Consensus 116 ~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 195 (515)
++++|+ +++.+|++++.|++|++||+.+++....
T Consensus 143 ~~~~~~--~~~~~l~s~s~d~~i~iwd~~~~~~~~~-------------------------------------------- 176 (420)
T 3vl1_A 143 TKLKFF--PSGEALISSSQDMQLKIWSVKDGSNPRT-------------------------------------------- 176 (420)
T ss_dssp EEEEEC--TTSSEEEEEETTSEEEEEETTTCCCCEE--------------------------------------------
T ss_pred EEEEEC--CCCCEEEEEeCCCeEEEEeCCCCcCceE--------------------------------------------
Confidence 999995 4677999999999999999987642111
Q ss_pred CCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecc
Q 010206 196 DSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 274 (515)
Q Consensus 196 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~ 274 (515)
+.+|...|.+++|+|++++|+++ .|+.|++||+++++....+.
T Consensus 177 ----------------------------------~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-- 220 (420)
T 3vl1_A 177 ----------------------------------LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN-- 220 (420)
T ss_dssp ----------------------------------EECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC--
T ss_pred ----------------------------------EcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEee--
Confidence 34788999999999999999998 89999999998776443221
Q ss_pred cCccccccCC---------------------ceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCC
Q 010206 275 KPANMEDLTE---------------------VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 333 (515)
Q Consensus 275 ~~~~~~~~~~---------------------~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 333 (515)
....+.. .+.+++|+|++ .+|++|+.||.|++||+++++....
T Consensus 221 ---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~------------ 284 (420)
T 3vl1_A 221 ---RKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQTIQ------------ 284 (420)
T ss_dssp ---BTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEEEE------------
T ss_pred ---cCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCceeEE------------
Confidence 1112334 44445557888 8999999999999999988764321
Q ss_pred ccccccccccceeEEEEccCCC-EEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCC
Q 010206 334 TRSFFTEIIASISDIKFARNGR-HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 411 (515)
Q Consensus 334 ~~~~~~~~~~~i~~~~~s~~~~-~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 411 (515)
....|...|.+++|+|+++ +|++|+. |.|++||+++...++..+..|.... +..+ +.+++
T Consensus 285 ---~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~--------------v~~~-~~~~~ 346 (420)
T 3vl1_A 285 ---LPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTP--------------INNV-YFAAG 346 (420)
T ss_dssp ---ECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSC--------------EEEE-EEETT
T ss_pred ---cccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCC--------------ceEE-EeCCC
Confidence 1234668899999999998 8888875 9999999997455677777754321 3355 45588
Q ss_pred CEEEEecCCCcEEEEecCCCCcc--------eeeeccCCCceeeEEECCCCC---eeEeecCCCeEEE
Q 010206 412 GRVATGSYSNLFRVFGCSEGSAE--------STTLEASKNPMRRQVQTPSRP---SRPLGSLSGVVRR 468 (515)
Q Consensus 412 ~~l~s~s~dg~i~iw~~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~---~l~s~~~d~~v~l 468 (515)
++|++++.||.|++|++...... ...+..|...+..++|+|+++ .+++.+.+|.+.+
T Consensus 347 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~ 414 (420)
T 3vl1_A 347 ALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCAL 414 (420)
T ss_dssp EEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEE
T ss_pred CEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEE
Confidence 89999999999999999864221 234567889999999999999 6777777888877
No 85
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.5e-34 Score=263.93 Aligned_cols=243 Identities=13% Similarity=0.154 Sum_probs=193.1
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|++++|+ +++++|++++.|++|++||+.+++.....
T Consensus 14 ~~V~~v~~s--~~g~~lasgs~D~~v~lwd~~~~~~~~~~---------------------------------------- 51 (316)
T 3bg1_A 14 DMIHDAQMD--YYGTRLATCSSDRSVKIFDVRNGGQILIA---------------------------------------- 51 (316)
T ss_dssp CCEEEEEEC--GGGCEEEEEETTTEEEEEEEETTEEEEEE----------------------------------------
T ss_pred CeEEEeeEc--CCCCEEEEEeCCCeEEEEEecCCCcEEEE----------------------------------------
Confidence 889999995 56779999999999999999876421110
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC--CCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
. +.+|...|.+++|++ ++++|+++ .|++|++||++++....
T Consensus 52 -----------------------------------~-l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~ 95 (316)
T 3bg1_A 52 -----------------------------------D-LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEK 95 (316)
T ss_dssp -----------------------------------E-EECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCE
T ss_pred -----------------------------------E-EcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceE
Confidence 0 368999999999986 48899998 89999999998653211
Q ss_pred ceecccCccccccCCceEEEEEecC--CCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 347 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (515)
+ ..+.+|...|.+++|+|+ + .+|++|+.|+.|++||++.+... .. ...+.+|...+.+
T Consensus 96 -~-----~~~~~h~~~V~~v~~~p~~~g-~~lasgs~D~~i~lwd~~~~~~~-------~~------~~~~~~h~~~v~~ 155 (316)
T 3bg1_A 96 -S-----HEHAGHDSSVNSVCWAPHDYG-LILACGSSDGAISLLTYTGEGQW-------EV------KKINNAHTIGCNA 155 (316)
T ss_dssp -E-----EEECCCSSCCCEEEECCTTTC-SCEEEECSSSCEEEEEECSSSCE-------EE------CCBTTSSSSCBCC
T ss_pred -E-----EEccCCCCceEEEEECCCCCC-cEEEEEcCCCCEEEEecCCCCCc-------ce------eeeeccccCCcce
Confidence 1 145679999999999998 5 79999999999999999865311 00 1124567788999
Q ss_pred EEEccC-----------------CCEEEEEcC-CeEEEEEeeCCC--CCeeeEeeeccccccccccccCCCccceeeEEE
Q 010206 348 IKFARN-----------------GRHILSRDY-MTLKLWDINMDS--GPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 407 (515)
Q Consensus 348 ~~~s~~-----------------~~~l~s~~~-~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 407 (515)
++|+|+ +++|++|+. +.|++||+.... +++..+.+|... |.+++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~---------------V~~v~~ 220 (316)
T 3bg1_A 156 VSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDW---------------VRDVAW 220 (316)
T ss_dssp CEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSC---------------EEEEEC
T ss_pred EEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCc---------------eEEEEe
Confidence 999997 468888765 999999997422 245566666654 569999
Q ss_pred cCCC----CEEEEecCCCcEEEEecCCC---CcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 408 SGDG----GRVATGSYSNLFRVFGCSEG---SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 408 s~~~----~~l~s~s~dg~i~iw~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+|++ ++|++++.|++|++|++.+. ......+..|...+.+++|+|++++|++++.|++|++
T Consensus 221 sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~l 288 (316)
T 3bg1_A 221 APSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTL 288 (316)
T ss_dssp CCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEE
T ss_pred cCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEE
Confidence 9987 89999999999999999863 1223456788999999999999999999999999999
No 86
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-32 Score=252.38 Aligned_cols=284 Identities=15% Similarity=0.168 Sum_probs=223.4
Q ss_pred cceeeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCcc
Q 010206 89 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF 168 (515)
Q Consensus 89 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 168 (515)
.++....+.+|. ..|++++| |. +.+|++++.||.|++||+.+++....
T Consensus 7 ~~~~~~~l~~h~------------~~v~~~~~-~~--~~~l~s~~~dg~v~vw~~~~~~~~~~----------------- 54 (313)
T 3odt_A 7 GYQLSATLKGHD------------QDVRDVVA-VD--DSKVASVSRDGTVRLWSKDDQWLGTV----------------- 54 (313)
T ss_dssp CCEEEEEECCCS------------SCEEEEEE-EE--TTEEEEEETTSEEEEEEESSSEEEEE-----------------
T ss_pred cHHHHHHhhCCC------------CCcEEEEe-cC--CCEEEEEEcCCcEEEEECCCCEEEEE-----------------
Confidence 445667889998 89999999 54 56899999999999999977643221
Q ss_pred CCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCE
Q 010206 169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET 248 (515)
Q Consensus 169 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 248 (515)
...|...|.+++|+|++++
T Consensus 55 -------------------------------------------------------------~~~~~~~v~~~~~~~~~~~ 73 (313)
T 3odt_A 55 -------------------------------------------------------------VYTGQGFLNSVCYDSEKEL 73 (313)
T ss_dssp -------------------------------------------------------------EEECSSCEEEEEEETTTTE
T ss_pred -------------------------------------------------------------eecCCccEEEEEECCCCCE
Confidence 2456788999999999999
Q ss_pred EEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceee
Q 010206 249 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 327 (515)
Q Consensus 249 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 327 (515)
|+++ .|+.|++|++........+ ..+.+|...|.+++|+ + .++++++.|+.|++||. +... .
T Consensus 74 l~~~~~dg~i~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~--~-~~l~~~~~d~~i~~~d~--~~~~----~--- 136 (313)
T 3odt_A 74 LLFGGKDTMINGVPLFATSGEDPL-----YTLIGHQGNVCSLSFQ--D-GVVISGSWDKTAKVWKE--GSLV----Y--- 136 (313)
T ss_dssp EEEEETTSCEEEEETTCCTTSCC------CEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEET--TEEE----E---
T ss_pred EEEecCCCeEEEEEeeecCCCCcc-----cchhhcccCEEEEEec--C-CEEEEEeCCCCEEEEcC--CcEE----E---
Confidence 9998 8999999999765432211 2567799999999994 4 68999999999999992 2211 1
Q ss_pred eccCCCccccccccccceeEEEEcc-CCCEEEEEcC-CeEEEEEeeCCCCCeeeEee-eccccccccccccCCCccceee
Q 010206 328 EQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFDKFE 404 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~ 404 (515)
.+..|...+.++.|+| ++.++++++. +.|++||. .+....+.. +... +.+
T Consensus 137 ---------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~---~~~~~~~~~~~~~~---------------i~~ 189 (313)
T 3odt_A 137 ---------NLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN---DKVIKTFSGIHNDV---------------VRH 189 (313)
T ss_dssp ---------EEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET---TEEEEEECSSCSSC---------------EEE
T ss_pred ---------ecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec---CceEEEEeccCccc---------------EEE
Confidence 1455668899999998 8999999875 99999993 445555554 3332 568
Q ss_pred EEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccc
Q 010206 405 CCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAF 484 (515)
Q Consensus 405 ~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~ 484 (515)
++|+|++. +++++.||.|++||++++ .....+..|..++.+++++|++ .+++++.||.|++++-.. .+......
T Consensus 190 ~~~~~~~~-~~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~---~~~~~~~~ 263 (313)
T 3odt_A 190 LAVVDDGH-FISCSNDGLIKLVDMHTG-DVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKEN---GSLKQVIT 263 (313)
T ss_dssp EEEEETTE-EEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTT---CCEEEEEE
T ss_pred EEEcCCCe-EEEccCCCeEEEEECCch-hhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCC---CceeEEEe
Confidence 99999998 899999999999999987 4557889999999999999999 689999999999933221 12222333
Q ss_pred cccCCeeEEEEcCCCCEEEEEcCCcEEEEeC
Q 010206 485 DFSMKLLHLAWHPSENSIACAASNSLYMYYA 515 (515)
Q Consensus 485 ~~~~~i~~~~~s~~~~~la~~~~~~~~i~~~ 515 (515)
.|...|.+++|+|++++++.+.++.+.+|+.
T Consensus 264 ~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~ 294 (313)
T 3odt_A 264 LPAISIWSVDCMSNGDIIVGSSDNLVRIFSQ 294 (313)
T ss_dssp CSSSCEEEEEECTTSCEEEEETTSCEEEEES
T ss_pred ccCceEEEEEEccCCCEEEEeCCCcEEEEeC
Confidence 5678999999999999777777778999973
No 87
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.3e-33 Score=260.88 Aligned_cols=273 Identities=14% Similarity=0.174 Sum_probs=205.5
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.+.|++++|+|++++||+|+.||.|+||++.++.. ..+....+.+|.
T Consensus 7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-------------------~~~~~~~~~~~~---------- 57 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS-------------------NWELSDSWRAHD---------- 57 (351)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSC-------------------CEEEEEEEECCS----------
T ss_pred CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC-------------------cceecceeccCC----------
Confidence 458999999999999999999999999999999986542 223455677887
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|++++|+|..++.+|++++.|++|++||+.+++.... ++
T Consensus 58 --~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~-------------------------------~~------ 98 (351)
T 3f3f_A 58 --SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECS-------------------------------GR------ 98 (351)
T ss_dssp --SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTS-------------------------------SC------
T ss_pred --CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccc-------------------------------cc------
Confidence 889999997654577999999999999999987642000 00
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC--CCEEEEe-CCCcEEEEeCCCCCc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
. ...... +..|...|.+++|+|+ +++|+++ .|+.|++||+++.+.
T Consensus 99 ---------------~----------------~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 146 (351)
T 3f3f_A 99 ---------------R----------------WNKLCT-LNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSD 146 (351)
T ss_dssp ---------------S----------------EEEEEE-ECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTC
T ss_pred ---------------C----------------cceeee-ecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHH
Confidence 0 001111 3578899999999999 9999998 899999999987764
Q ss_pred ccceec-----ccCccccccCCceEEEEEecC---CCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccc
Q 010206 268 SFNIVD-----VKPANMEDLTEVITSAEFHPT---HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT 339 (515)
Q Consensus 268 ~~~~~~-----~~~~~~~~~~~~i~~i~~~p~---~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (515)
...+.. ........|...+.+++|+|+ + ..+++++.++.+.+|+...+.... ...+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~--------------~~~~~ 211 (351)
T 3f3f_A 147 LRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSP-EKLAVSALEQAIIYQRGKDGKLHV--------------AAKLP 211 (351)
T ss_dssp TTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSC-CEEEEEETTEEEEEEECTTSCEEE--------------EEECC
T ss_pred hccccccccccccccccCCcccceeEEEeccCCCCC-cEEEEecCCCcEEEEccCCCceee--------------eeecC
Confidence 432110 000112357889999999997 6 899999999999888876654310 11245
Q ss_pred ccccceeEEEEccCC----CEEEEEcC-CeEEEEEeeCCC----------------------------------------
Q 010206 340 EIIASISDIKFARNG----RHILSRDY-MTLKLWDINMDS---------------------------------------- 374 (515)
Q Consensus 340 ~~~~~i~~~~~s~~~----~~l~s~~~-~~i~iwd~~~~~---------------------------------------- 374 (515)
+|...|.+++|+|++ ++|++++. +.|++||++...
T Consensus 212 ~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (351)
T 3f3f_A 212 GHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQ 291 (351)
T ss_dssp CCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------C
T ss_pred CCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeec
Confidence 677899999999998 78998765 999999998521
Q ss_pred -----CCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCc
Q 010206 375 -----GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 433 (515)
Q Consensus 375 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~ 433 (515)
+++..+.+|. ..|++++|+|++++|++++.||.|++|++.+++.
T Consensus 292 ~~~~~~~~~~~~~h~---------------~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 292 SNLQVELLSEHDDHN---------------GEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp CSEEEEEEEEECTTS---------------SCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred ccccccEEEEEeccc---------------ccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 1112222222 2367999999999999999999999999998743
No 88
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-34 Score=272.69 Aligned_cols=243 Identities=11% Similarity=0.080 Sum_probs=183.9
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|++++|+ +++++|++++.|+.|++||+.++......
T Consensus 12 ~~v~~~~~s--~~g~~l~~~~~d~~i~iw~~~~~~~~~~~---------------------------------------- 49 (377)
T 3dwl_C 12 KPSYEHAFN--SQRTEFVTTTATNQVELYEQDGNGWKHAR---------------------------------------- 49 (377)
T ss_dssp SCCSCCEEC--SSSSEEECCCSSSCBCEEEEETTEEEECC----------------------------------------
T ss_pred CcEEEEEEC--CCCCEEEEecCCCEEEEEEccCCceEEEE----------------------------------------
Confidence 679999995 46779999999999999998876311110
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
. +.+|...|.+++|+|++++|+++ .|+.|++||+.+.+.....
T Consensus 50 -----------------------------------~-~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~ 93 (377)
T 3dwl_C 50 -----------------------------------T-FSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQT 93 (377)
T ss_dssp -----------------------------------C-BCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCE
T ss_pred -----------------------------------E-EecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeee
Confidence 0 35788999999999999999998 8999999999876511111
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccc-cccceeEEEE
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE-IIASISDIKF 350 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~ 350 (515)
..+..|...|.+++|+|++ ++|++++.|+.|++||+++++.... .. .+.+ |...|.+++|
T Consensus 94 -----~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~-~~------------~~~~~h~~~v~~~~~ 154 (377)
T 3dwl_C 94 -----LVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWWV-SK------------HLKRPLRSTILSLDW 154 (377)
T ss_dssp -----EECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----CCC-CE------------EECSSCCSCEEEEEE
T ss_pred -----eEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCccccee-ee------------EeecccCCCeEEEEE
Confidence 1456799999999999998 8999999999999999988652100 11 1333 7789999999
Q ss_pred ccCCCEEEEEcC-CeEEEEEeeCCC-----------------CCeeeEeeeccccccccccccCCCccceeeEEEcCCCC
Q 010206 351 ARNGRHILSRDY-MTLKLWDINMDS-----------------GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 412 (515)
Q Consensus 351 s~~~~~l~s~~~-~~i~iwd~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 412 (515)
+|++++|++++. +.|++||+.... +++..+ .|.. .|.+++|+|+++
T Consensus 155 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---------------~v~~~~~sp~~~ 218 (377)
T 3dwl_C 155 HPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG---------------WVHAVGFSPSGN 218 (377)
T ss_dssp CTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS---------------SEEEEEECTTSS
T ss_pred cCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc---------------eEEEEEECCCCC
Confidence 999999999875 999999996311 111222 2222 266999999999
Q ss_pred EEEEecCCCcEEEEecCCCCcc---eeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 413 RVATGSYSNLFRVFGCSEGSAE---STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 413 ~l~s~s~dg~i~iw~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+|++++.||.|++||+.++... ...+..|..++.+++|+|++++|++++.++.+.+
T Consensus 219 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 277 (377)
T 3dwl_C 219 ALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILL 277 (377)
T ss_dssp CEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEE
T ss_pred EEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEE
Confidence 9999999999999999988541 5788999999999999999999999998888866
No 89
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-34 Score=293.02 Aligned_cols=259 Identities=14% Similarity=0.216 Sum_probs=203.6
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.++|++++|+|+|++|++|+.||.|+||++.++.. .....+.+|.
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~---------------------~~~~~l~~h~---------- 53 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH---------------------KLIDTLTGHE---------- 53 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE---------------------EEEEEECCCS----------
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC---------------------ccceeccCCc----------
Confidence 458999999999999999999999999999999874322 2456678888
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|++++|+|..++.+|++++.||+|++||+.+++......
T Consensus 54 --~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~------------------------------------- 94 (753)
T 3jro_A 54 --GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV------------------------------------- 94 (753)
T ss_dssp --SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEE-------------------------------------
T ss_pred --CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccccccc-------------------------------------
Confidence 88999999766557899999999999999998765222111
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC--CCEEEEe-CCCcEEEEeCCCCCc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
..+|...|.+++|+|+ ++.|+++ .||.|++||+++...
T Consensus 95 ---------------------------------------~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~ 135 (753)
T 3jro_A 95 ---------------------------------------HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 135 (753)
T ss_dssp ---------------------------------------ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC
T ss_pred ---------------------------------------ccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC
Confidence 3468889999999999 9999998 899999999987643
Q ss_pred ccceecccCccccccCCceEEEEEecC-------------CCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCc
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPT-------------HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 334 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~-------------~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 334 (515)
... ..+.+|...|.+++|+|. + ..|++|+.||.|++||++++.......
T Consensus 136 ~~~------~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~~~~----------- 197 (753)
T 3jro_A 136 TSP------IIIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLE----------- 197 (753)
T ss_dssp CCC------EEEECCSSCEEEEEECCCC---------CGGG-CCEEEEETTSCEEEEEEETTTTEEEEE-----------
T ss_pred cce------eEeecCCCceEEEEecCcccccccccccCCCC-CEEEEEECCCeEEEEeccCCcccceee-----------
Confidence 322 145678999999999994 6 899999999999999998764221111
Q ss_pred cccccccccceeEEEEccC---CCEEEEEcC-CeEEEEEeeCCCCC----eeeEeeeccccccccccccCCCccceeeEE
Q 010206 335 RSFFTEIIASISDIKFARN---GRHILSRDY-MTLKLWDINMDSGP----VATFQVHEHLRPKLCDLYENDSIFDKFECC 406 (515)
Q Consensus 335 ~~~~~~~~~~i~~~~~s~~---~~~l~s~~~-~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 406 (515)
..+.+|..+|.+++|+|+ +++|++++. |.|++||+...... ......|.. .|++++
T Consensus 198 -~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~---------------~v~~l~ 261 (753)
T 3jro_A 198 -STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD---------------VLWRAS 261 (753)
T ss_dssp -EEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSS---------------CCCCEE
T ss_pred -eeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCC---------------ceEEEE
Confidence 124667789999999999 899999875 99999999863211 111111221 255899
Q ss_pred EcCCCCEEEEecCCCcEEEEecCCCC
Q 010206 407 LSGDGGRVATGSYSNLFRVFGCSEGS 432 (515)
Q Consensus 407 ~s~~~~~l~s~s~dg~i~iw~~~~~~ 432 (515)
|+|+|++|++|+.||.|++|++..+.
T Consensus 262 ~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 262 WSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp ECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred EcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 99999999999999999999998653
No 90
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=9.1e-33 Score=265.75 Aligned_cols=269 Identities=13% Similarity=0.261 Sum_probs=220.4
Q ss_pred ccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccc
Q 010206 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (515)
+|...|.|++| ++++|++|+.||.|++||+.+++ ....+.+|.
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~-----------------------~~~~~~~h~------------ 173 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE-----------------------CKRILTGHT------------ 173 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC-----------------------EEEEECCCS------------
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCe-----------------------EEEEEcCCC------------
Confidence 56778999887 78999999999999999987765 335677887
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|.+++| ++.+|++|+.||+|++||+.+++....
T Consensus 174 ~~v~~l~~----~~~~l~sg~~dg~i~vwd~~~~~~~~~----------------------------------------- 208 (435)
T 1p22_A 174 GSVLCLQY----DERVIITGSSDSTVRVWDVNTGEMLNT----------------------------------------- 208 (435)
T ss_dssp SCEEEEEC----CSSEEEEEETTSCEEEEESSSCCEEEE-----------------------------------------
T ss_pred CcEEEEEE----CCCEEEEEcCCCeEEEEECCCCcEEEE-----------------------------------------
Confidence 88999998 356999999999999999987753221
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
+.+|...|.+++|++ ..|+++ .|+.|++||+++.......
T Consensus 209 -------------------------------------~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~ 249 (435)
T 1p22_A 209 -------------------------------------LIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLR 249 (435)
T ss_dssp -------------------------------------ECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEE
T ss_pred -------------------------------------EcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceee
Confidence 246778899999974 488887 8999999999876543211
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
..+.+|...|.+++| ++ .++++|+.||.|++||+++++... . +.+|...|.++.++
T Consensus 250 -----~~~~~~~~~v~~~~~--~~-~~l~s~~~dg~i~vwd~~~~~~~~----~------------~~~~~~~v~~~~~~ 305 (435)
T 1p22_A 250 -----RVLVGHRAAVNVVDF--DD-KYIVSASGDRTIKVWNTSTCEFVR----T------------LNGHKRGIACLQYR 305 (435)
T ss_dssp -----EEECCCSSCEEEEEE--ET-TEEEEEETTSEEEEEETTTCCEEE----E------------EECCSSCEEEEEEE
T ss_pred -----eEecCCCCcEEEEEe--CC-CEEEEEeCCCeEEEEECCcCcEEE----E------------EcCCCCcEEEEEeC
Confidence 145679999999999 45 799999999999999999876432 1 45567889999985
Q ss_pred cCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCC
Q 010206 352 RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 352 ~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~ 430 (515)
++++++|+. +.|++||+++ ++++..+.+|... |.+++| ++++|++|+.||.|++||+.+
T Consensus 306 --~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~h~~~---------------v~~~~~--~~~~l~sg~~dg~i~vwd~~~ 365 (435)
T 1p22_A 306 --DRLVVSGSSDNTIRLWDIEC-GACLRVLEGHEEL---------------VRCIRF--DNKRIVSGAYDGKIKVWDLVA 365 (435)
T ss_dssp --TTEEEEEETTSCEEEEETTT-CCEEEEECCCSSC---------------EEEEEC--CSSEEEEEETTSCEEEEEHHH
T ss_pred --CCEEEEEeCCCeEEEEECCC-CCEEEEEeCCcCc---------------EEEEEe--cCCEEEEEeCCCcEEEEECCC
Confidence 678888765 9999999997 8888888877755 447777 789999999999999999976
Q ss_pred CCc--------ceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 431 GSA--------ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 431 ~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+.. ....+.+|..+|.++++ ++.+|++++.||.|++
T Consensus 366 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~i 409 (435)
T 1p22_A 366 ALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILI 409 (435)
T ss_dssp HTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEE
T ss_pred CCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEE
Confidence 531 45778899999999999 7889999999999999
No 91
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.6e-32 Score=266.72 Aligned_cols=323 Identities=12% Similarity=0.159 Sum_probs=240.6
Q ss_pred eecccCCCcccccccccccce-eEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCC
Q 010206 94 TEFQSHEPEFDYLKSLEIEEK-INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (515)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~-v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (515)
..+.+|. .. +.++.+ + +.++++++.||+|++||+.+++.......+ .+.|.
T Consensus 115 ~~l~~h~------------~~v~~~~~~--~--~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h--------~~~V~---- 166 (464)
T 3v7d_B 115 TTLRGHM------------TSVITCLQF--E--DNYVITGADDKMIRVYDSINKKFLLQLSGH--------DGGVW---- 166 (464)
T ss_dssp EEEECCS------------SSCEEEEEE--E--TTEEEEEETTSCEEEEETTTTEEEEEECCC--------SSCEE----
T ss_pred EEEcCCC------------CCcEEEEEE--C--CCEEEEEcCCCcEEEEECCCCcEEEEEeCC--------CcCEE----
Confidence 4567776 44 566666 3 459999999999999999999876665533 34444
Q ss_pred cCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEec--CCCCEEE
Q 010206 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNN--SDGETFI 250 (515)
Q Consensus 173 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~ 250 (515)
.++|+|++ .+ ++++.|+.|++|| +.. ..+... +.+|...|.+++|+ +++++|+
T Consensus 167 ---~l~~~~~~-~l------------~s~s~dg~i~vwd--~~~------~~~~~~-~~~h~~~v~~l~~~~~~~~~~l~ 221 (464)
T 3v7d_B 167 ---ALKYAHGG-IL------------VSGSTDRTVRVWD--IKK------GCCTHV-FEGHNSTVRCLDIVEYKNIKYIV 221 (464)
T ss_dssp ---EEEECSTT-EE------------EEEETTSCEEEEE--TTT------TEEEEE-ECCCSSCEEEEEEEESSSCEEEE
T ss_pred ---EEEEcCCC-EE------------EEEeCCCCEEEEE--CCC------CcEEEE-ECCCCCccEEEEEecCCCCCEEE
Confidence 78888888 66 9999999999999 433 223333 46899999999998 5778899
Q ss_pred Ee-CCCcEEEEeCCCCCcccceecc---------------cCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecC
Q 010206 251 SA-DDLRINLWNLEISNQSFNIVDV---------------KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 314 (515)
Q Consensus 251 s~-~d~~i~iwd~~~~~~~~~~~~~---------------~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~ 314 (515)
++ .|+.|++||+++.......... ....+.+|...+.++ ++++ .++++|+.|+.|++||++
T Consensus 222 s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~-~~l~~~~~d~~i~vwd~~ 298 (464)
T 3v7d_B 222 TGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHG-NIVVSGSYDNTLIVWDVA 298 (464)
T ss_dssp EEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEET-TEEEEEETTSCEEEEETT
T ss_pred EEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCC-CEEEEEeCCCeEEEEECC
Confidence 98 8999999999876533211000 001456788888877 5666 799999999999999998
Q ss_pred cccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccccccccc
Q 010206 315 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDL 393 (515)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 393 (515)
+++... .+.+|...|.+++|+|+++++++|+. +.|++||+.+ ++++..+.+|...
T Consensus 299 ~~~~~~----------------~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~------- 354 (464)
T 3v7d_B 299 QMKCLY----------------ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN-GELMYTLQGHTAL------- 354 (464)
T ss_dssp TTEEEE----------------EECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-TEEEEEECCCSSC-------
T ss_pred CCcEEE----------------EecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEEeCCCCc-------
Confidence 876432 14567789999999999999999875 9999999986 8888888887755
Q ss_pred ccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCC
Q 010206 394 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGAD 473 (515)
Q Consensus 394 ~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~ 473 (515)
|.+++|+ +++|++++.||.|++||+.++... .. ..+...+..++++|+++++++++ |+.|++++-..
T Consensus 355 --------v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~-~~-~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~ 421 (464)
T 3v7d_B 355 --------VGLLRLS--DKFLVSAAADGSIRGWDANDYSRK-FS-YHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRS 421 (464)
T ss_dssp --------EEEEEEC--SSEEEEEETTSEEEEEETTTCCEE-EE-EECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTT
T ss_pred --------EEEEEEc--CCEEEEEeCCCcEEEEECCCCcee-ee-ecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCC
Confidence 4578886 589999999999999999976433 22 24667788889999999999998 89999933221
Q ss_pred CCccccCC-ccccccCCeeEEEEcCCCCEEEEEcCCcEEEE
Q 010206 474 NSALDANG-NAFDFSMKLLHLAWHPSENSIACAASNSLYMY 513 (515)
Q Consensus 474 ~~~~~~~~-~~~~~~~~i~~~~~s~~~~~la~~~~~~~~i~ 513 (515)
. +... ....+...|.+++|+ ...+++++++++..+|
T Consensus 422 g---~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i 458 (464)
T 3v7d_B 422 G---KLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFL 458 (464)
T ss_dssp C---CEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEE
T ss_pred C---cEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEE
Confidence 1 1221 234578899999997 3344445556665544
No 92
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=6.2e-33 Score=259.96 Aligned_cols=246 Identities=13% Similarity=0.119 Sum_probs=185.2
Q ss_pred cCcCCeEEEEecCC---CCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEE------ecCCCcEEEE
Q 010206 232 AHDYHINSISNNSD---GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF------HPTHCNMLAY 301 (515)
Q Consensus 232 ~~~~~v~~~~~~~~---~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~------~p~~~~~l~~ 301 (515)
+|...|.+++|+|+ +++|+++ .|+.|++||+.+.+.... .+.+|...|.+++| +|++ .+|++
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~s~~~-~~l~~ 134 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY-------SVKGHKEIINAIDGIGGLGIGEGA-PEIVT 134 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSE-------EECCCSSCEEEEEEESGGGCC-CC-CEEEE
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEE-------EEEecccceEEEeeccccccCCCc-cEEEE
Confidence 57789999999998 6899998 899999999987762322 56789999999965 6787 89999
Q ss_pred EecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE----EccCCCEEEEEcC-CeEEEEEeeCCCCC
Q 010206 302 SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK----FARNGRHILSRDY-MTLKLWDINMDSGP 376 (515)
Q Consensus 302 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~s~~~~~l~s~~~-~~i~iwd~~~~~~~ 376 (515)
++.|+.|++||++++... ...+..+. ..+...+.+++ |+|++++|++++. +.|++||+++ .+.
T Consensus 135 ~~~d~~i~vwd~~~~~~~---~~~~~~~~--------~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~ 202 (357)
T 3i2n_A 135 GSRDGTVKVWDPRQKDDP---VANMEPVQ--------GENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRN-MAL 202 (357)
T ss_dssp EETTSCEEEECTTSCSSC---SEEECCCT--------TSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTT-TEE
T ss_pred EeCCCeEEEEeCCCCCCc---ceeccccC--------CCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECcc-Cce
Confidence 999999999999887522 12222211 11124788888 7889999999876 9999999985 443
Q ss_pred eeeEeeeccccccccccccCCCccceeeEEEcC---CCCEEEEecCCCcEEEEecCCCCcceeee-----ccCCCceeeE
Q 010206 377 VATFQVHEHLRPKLCDLYENDSIFDKFECCLSG---DGGRVATGSYSNLFRVFGCSEGSAESTTL-----EASKNPMRRQ 448 (515)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~s~s~dg~i~iw~~~~~~~~~~~~-----~~~~~~v~~~ 448 (515)
. ....|... +.+++|+| ++++|++++.||.|++||++++... ..+ .+|..++..+
T Consensus 203 ~-~~~~~~~~---------------v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~v~~~ 265 (357)
T 3i2n_A 203 R-WETNIKNG---------------VCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT-KGFASVSEKAHKSTVWQV 265 (357)
T ss_dssp E-EEEECSSC---------------EEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT-TEEEEEEEECCSSCEEEE
T ss_pred e-eecCCCCc---------------eEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc-cceeeeccCCCcCCEEEE
Confidence 2 23334332 56999999 9999999999999999999876333 333 4899999999
Q ss_pred EECCCCC-eeEeecCCCeEEEecCCCCCcc----------------ccCCccccccCCeeEEEEcCCCCEEE-EEcC-Cc
Q 010206 449 VQTPSRP-SRPLGSLSGVVRRVKGADNSAL----------------DANGNAFDFSMKLLHLAWHPSENSIA-CAAS-NS 509 (515)
Q Consensus 449 ~~~~~~~-~l~s~~~d~~v~l~~~~~~~~~----------------~~~~~~~~~~~~i~~~~~s~~~~~la-~~~~-~~ 509 (515)
+++|+++ ++++++.||.|++++-...... ........|...|.+++|+|++++|+ +++. ..
T Consensus 266 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~ 345 (357)
T 3i2n_A 266 RHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQT 345 (357)
T ss_dssp EEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSE
T ss_pred EECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCc
Confidence 9999998 8999999999999332211100 11122335788999999999999998 5764 55
Q ss_pred EEEEe
Q 010206 510 LYMYY 514 (515)
Q Consensus 510 ~~i~~ 514 (515)
+.+|+
T Consensus 346 i~iw~ 350 (357)
T 3i2n_A 346 VRVLI 350 (357)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88886
No 93
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-34 Score=276.93 Aligned_cols=293 Identities=10% Similarity=0.088 Sum_probs=205.0
Q ss_pred cccccceEEEEECCC------CCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccc
Q 010206 32 VQEVDIISAIEFDKS------GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY 105 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~------g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 105 (515)
.+|.+.|.+++|+|+ +.+||+|+.||+|+|||+.++....... + . .......+.+|.
T Consensus 204 ~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~--~---------~-~~~p~~~l~~h~----- 266 (524)
T 2j04_B 204 VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF--K---------M-CEKPSLTLSLAD----- 266 (524)
T ss_dssp EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE--E---------C-CCSCSEEECCTT-----
T ss_pred EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc--e---------e-ecCceEEEEcCC-----
Confidence 357789999999997 5799999999999999997654210000 0 0 000123466777
Q ss_pred cccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCc
Q 010206 106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (515)
Q Consensus 106 ~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 185 (515)
..|++++|++ + ..|++|+.||+|++||++++...
T Consensus 267 -------~~v~sv~~s~--~-~~lasgs~DgtV~lWD~~~~~~~------------------------------------ 300 (524)
T 2j04_B 267 -------SLITTFDFLS--P-TTVVCGFKNGFVAEFDLTDPEVP------------------------------------ 300 (524)
T ss_dssp -------TCEEEEEESS--S-SEEEEEETTSEEEEEETTBCSSC------------------------------------
T ss_pred -------CCEEEEEecC--C-CeEEEEeCCCEEEEEECCCCCCc------------------------------------
Confidence 8899999964 3 48999999999999999864200
Q ss_pred cccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEE--EecCCC-CEEEEe-CCCcEEEEe
Q 010206 186 GERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSI--SNNSDG-ETFISA-DDLRINLWN 261 (515)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~s~-~d~~i~iwd 261 (515)
...+.+|...|.++ +|+|++ ++|+++ .|++|++||
T Consensus 301 -----------------------------------------~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD 339 (524)
T 2j04_B 301 -----------------------------------------SFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFN 339 (524)
T ss_dssp -----------------------------------------SEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEEC
T ss_pred -----------------------------------------eEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEE
Confidence 00035788999999 578887 899998 899999999
Q ss_pred CCCCCcccceecccCccccccC--CceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccc
Q 010206 262 LEISNQSFNIVDVKPANMEDLT--EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT 339 (515)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~--~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (515)
+++.+... .+.+|. ..|.+++|+|++ ..+++++.|+.|++||++++.... .+.
T Consensus 340 ~~~~~~~~--------~~~~~~~~~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~~~~~~~~----------------~l~ 394 (524)
T 2j04_B 340 PKDIATTK--------TTVSRFRGSNLVPVVYCPQI-YSYIYSDGASSLRAVPSRAAFAVH----------------PLV 394 (524)
T ss_dssp GGGHHHHC--------EEEEECSCCSCCCEEEETTT-TEEEEECSSSEEEEEETTCTTCCE----------------EEE
T ss_pred CCCCCccc--------ccccccccCcccceEeCCCc-CeEEEeCCCCcEEEEECcccccce----------------eee
Confidence 98665432 233443 357899999998 789999999999999998865421 245
Q ss_pred ccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEec
Q 010206 340 EIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 418 (515)
Q Consensus 340 ~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s 418 (515)
+|.+.|++++|+|+|++|++|+. ++|++||+.. +.+.......... ....+++++|+|+++.+. ..
T Consensus 395 gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~--~~~~~~~~~~~~~----------~~~~v~~v~~sp~g~~~~-~~ 461 (524)
T 2j04_B 395 SRETTITAIGVSRLHPMVLAGSADGSLIITNAAR--RLLHGIKNSSATQ----------KSLRLWKWDYSIKDDKYR-ID 461 (524)
T ss_dssp ECSSCEEEEECCSSCCBCEEEETTTEEECCBSCS--STTTCC------C----------CCCEEEECBCCSSSCEEE-EC
T ss_pred cCCCceEEEEeCCCCCeEEEEECCCEEEEEechH--hhccccccCccce----------eeeEEEEeccCCCCCeEE-cc
Confidence 68899999999999999999875 9999999863 3333221111000 001245889999999553 22
Q ss_pred CCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCC---eeEeecCCCeEEE
Q 010206 419 YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP---SRPLGSLSGVVRR 468 (515)
Q Consensus 419 ~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~s~~~d~~v~l 468 (515)
.+ +.+|+....+....++.+|..+|.+++|+|+++ ++|+|+.||.|+|
T Consensus 462 ~~--~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrl 512 (524)
T 2j04_B 462 SS--YEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTL 512 (524)
T ss_dssp CC--CCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEE
T ss_pred CC--ceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEE
Confidence 22 334443322245578899999999999999965 9999999999999
No 94
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.7e-32 Score=258.06 Aligned_cols=294 Identities=14% Similarity=0.170 Sum_probs=220.6
Q ss_pred ccccccceEEEEECCC---CCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccc
Q 010206 31 EVQEVDIISAIEFDKS---GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~---g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (515)
..+|.+.|++++|+|+ |++|++|+.||.|+||++.+.... ....+.+|.
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~---------------------~~~~~~~h~------- 86 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT---------------------IPKAQQMHT------- 86 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE---------------------EEEEEEECS-------
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce---------------------eEEEecccc-------
Confidence 4589999999999999 699999999999999999863221 334567787
Q ss_pred cccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccc
Q 010206 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (515)
Q Consensus 108 ~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~ 187 (515)
..|++++|+ +++.+|++++.|+.|++||+.+++...
T Consensus 87 -----~~v~~~~~~--~~~~~l~s~~~dg~v~iwd~~~~~~~~------------------------------------- 122 (368)
T 3mmy_A 87 -----GPVLDVCWS--DDGSKVFTASCDKTAKMWDLSSNQAIQ------------------------------------- 122 (368)
T ss_dssp -----SCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEE-------------------------------------
T ss_pred -----CCEEEEEEC--cCCCEEEEEcCCCcEEEEEcCCCCcee-------------------------------------
Confidence 889999995 467799999999999999998765322
Q ss_pred cccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEe--cCCCCEEEEe-CCCcEEEEeCCC
Q 010206 188 RNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISN--NSDGETFISA-DDLRINLWNLEI 264 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~s~-~d~~i~iwd~~~ 264 (515)
...|...|.+++| ++++++|+++ .|+.|++||+++
T Consensus 123 ------------------------------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 160 (368)
T 3mmy_A 123 ------------------------------------------IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS 160 (368)
T ss_dssp ------------------------------------------EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSC
T ss_pred ------------------------------------------eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCC
Confidence 1357788999999 8999999998 899999999987
Q ss_pred CCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccc
Q 010206 265 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 344 (515)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (515)
.+... .+.. ...+.++.+.+ ..+++++.++.+++|+++....... .. ...+...
T Consensus 161 ~~~~~--------~~~~-~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~---~~-----------~~~~~~~ 214 (368)
T 3mmy_A 161 SNPMM--------VLQL-PERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFR---RI-----------ESPLKHQ 214 (368)
T ss_dssp SSCSE--------EEEC-SSCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEE---EC-----------CCSCSSC
T ss_pred CcEEE--------EEec-CCCceEEEecC---CeeEEEeCCCcEEEEEeccccchhh---hc-----------cccccCC
Confidence 76443 2232 34567777765 4688899999999999987543211 00 0112234
Q ss_pred eeEEEEccCCCE----EEEEcC-CeEEEEEeeCCC--CCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEe
Q 010206 345 ISDIKFARNGRH----ILSRDY-MTLKLWDINMDS--GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 417 (515)
Q Consensus 345 i~~~~~s~~~~~----l~s~~~-~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 417 (515)
+.++.+.++... +++++. +.|++||+.... ..+..+..|......... ......|++++|+|++++|+++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~s~ 291 (368)
T 3mmy_A 215 HRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSA---PQDIYAVNGIAFHPVHGTLATV 291 (368)
T ss_dssp EEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CC---CEEECCEEEEEECTTTCCEEEE
T ss_pred CceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccc---cccccceEEEEEecCCCEEEEE
Confidence 566666655543 777765 999999998621 445666666532110000 0011136699999999999999
Q ss_pred cCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 418 SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 418 s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+.||.|++||+.++ .....+..|..++..++|+|++++|++++.|+..+.
T Consensus 292 ~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~ 341 (368)
T 3mmy_A 292 GSDGRFSFWDKDAR-TKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKG 341 (368)
T ss_dssp ETTSCEEEEETTTT-EEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTC
T ss_pred ccCCeEEEEECCCC-cEEEEecCCCCCceEEEECCCCCeEEEEeccccccc
Confidence 99999999999987 556888999999999999999999999999886555
No 95
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=7.5e-32 Score=251.04 Aligned_cols=271 Identities=12% Similarity=0.070 Sum_probs=210.8
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
+.|++++|+| ++.+|++++.|+.|++|++.+++.....
T Consensus 12 ~~v~~~~~s~--~~~~l~~~~~d~~v~iw~~~~~~~~~~~---------------------------------------- 49 (342)
T 1yfq_A 12 DYISDIKIIP--SKSLLLITSWDGSLTVYKFDIQAKNVDL---------------------------------------- 49 (342)
T ss_dssp SCEEEEEEEG--GGTEEEEEETTSEEEEEEEETTTTEEEE----------------------------------------
T ss_pred CcEEEEEEcC--CCCEEEEEcCCCeEEEEEeCCCCccccc----------------------------------------
Confidence 8899999965 5679999999999999998865411100
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCC-EEEEe-CCCcEEEEeC-CCCCccc
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNL-EISNQSF 269 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~-~~~~~~~ 269 (515)
.. ..+|...|.+++|+|+++ +|+++ .|+.|++||+ .+....
T Consensus 50 ----------------------------------~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~- 93 (342)
T 1yfq_A 50 ----------------------------------LQ-SLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQ- 93 (342)
T ss_dssp ----------------------------------EE-EEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEE-
T ss_pred ----------------------------------ee-eeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceE-
Confidence 00 236778999999999999 99998 8999999999 765431
Q ss_pred ceecccCccccc--cCCceEEEEEecCCCcEEEEEecCCeEEEEecCc---------ccccccccceeeeccCCCccccc
Q 010206 270 NIVDVKPANMED--LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ---------SALCDTHSKLFEEQEAPGTRSFF 338 (515)
Q Consensus 270 ~~~~~~~~~~~~--~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 338 (515)
.+.+ |...|.+++|+| + ..|++++.|+.|++||+++ ++.... +
T Consensus 94 --------~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~----------------~ 147 (342)
T 1yfq_A 94 --------ALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN----------------T 147 (342)
T ss_dssp --------ECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS----------------S
T ss_pred --------eccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCeeeE----------------E
Confidence 5566 999999999999 7 8999999999999999986 432211 2
Q ss_pred cccccceeEEEEccCCCEEEEEc-CCeEEEEEeeC-CCCCeeeEe-eeccccccccccccCCCccceeeEEEcC-CCCEE
Q 010206 339 TEIIASISDIKFARNGRHILSRD-YMTLKLWDINM-DSGPVATFQ-VHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRV 414 (515)
Q Consensus 339 ~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l 414 (515)
. |...|.+++|+|++ +++++ ++.|++||++. ......... .+.. .+.+++|+| ++++|
T Consensus 148 ~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---------------~i~~i~~~~~~~~~l 209 (342)
T 1yfq_A 148 K-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKY---------------QIRDVALLPKEQEGY 209 (342)
T ss_dssp S-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSS---------------CEEEEEECSGGGCEE
T ss_pred e-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCC---------------ceeEEEECCCCCCEE
Confidence 2 55789999999987 66655 59999999985 333222222 2222 256999999 99999
Q ss_pred EEecCCCcEEEEecCCC-----CcceeeeccCCC---------ceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccC
Q 010206 415 ATGSYSNLFRVFGCSEG-----SAESTTLEASKN---------PMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDAN 480 (515)
Q Consensus 415 ~s~s~dg~i~iw~~~~~-----~~~~~~~~~~~~---------~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~ 480 (515)
++++.||.|++|++... ......+..|.. ++.+++++|++++|++++.||.|++++-.. .+..
T Consensus 210 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~---~~~~ 286 (342)
T 1yfq_A 210 ACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT---RKKI 286 (342)
T ss_dssp EEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT---TEEE
T ss_pred EEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCcc---HhHh
Confidence 99999999999999876 355577888765 999999999999999999999999943221 1222
Q ss_pred Cccccc-cCCeeEEEEcCCCCEEEEEcCCcE
Q 010206 481 GNAFDF-SMKLLHLAWHPSENSIACAASNSL 510 (515)
Q Consensus 481 ~~~~~~-~~~i~~~~~s~~~~~la~~~~~~~ 510 (515)
.....| ...|.+++ |++++|++++.|+.
T Consensus 287 ~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 287 KNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp EECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred hhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 234456 88999999 99999999987764
No 96
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=5.8e-32 Score=258.23 Aligned_cols=307 Identities=13% Similarity=0.190 Sum_probs=215.3
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
+.|++++|+|. ++.+|++++.||.|++||+.+++.........
T Consensus 44 ~~v~~~~~s~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~------------------------------------ 86 (408)
T 4a11_B 44 GGINTLDIEPV-EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKA------------------------------------ 86 (408)
T ss_dssp SCEEEEEECTT-TCCEEEEEETTSCEEEEECCCCSSSSCEEECE------------------------------------
T ss_pred CcEEEEEEecC-CCCEEEEEcCCCeEEEEECCCCcccceEeccc------------------------------------
Confidence 88999999541 57799999999999999998765322211100
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC-CCCEEEEe-CCCcEEEEeCCCCCcccc
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFN 270 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~ 270 (515)
.. ........+|...|.+++|+| ++.+|+++ .|+.|++||+.+.+...
T Consensus 87 ---------------------~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~- 136 (408)
T 4a11_B 87 ---------------------VC--------SIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTAD- 136 (408)
T ss_dssp ---------------------EE--------EECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEE-
T ss_pred ---------------------cc--------cccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccce-
Confidence 00 000000246889999999999 77788888 89999999998765442
Q ss_pred eecccCccccccCCceEEEEEecCCC--cEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTHC--NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~~--~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
...+...+.++.++|.+. .++++++.|+.|++||+++++... .+.+|...|.++
T Consensus 137 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~----------------~~~~~~~~v~~~ 192 (408)
T 4a11_B 137 --------VFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH----------------ILQGHRQEILAV 192 (408)
T ss_dssp --------EEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCE----------------EECCCCSCEEEE
T ss_pred --------eccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceee----------------eecCCCCcEEEE
Confidence 123678899999998541 499999999999999998875421 245677899999
Q ss_pred EEccCCCE-EEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEE
Q 010206 349 KFARNGRH-ILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 426 (515)
Q Consensus 349 ~~s~~~~~-l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw 426 (515)
+|+|++++ +++++. +.|++||++....++..+..+...............-..|.+++|+|++++|++++.||.|++|
T Consensus 193 ~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 272 (408)
T 4a11_B 193 SWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272 (408)
T ss_dssp EECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEE
Confidence 99999984 777765 9999999987554555554333221111111111222346799999999999999999999999
Q ss_pred ecCCCCcceeeecc-----CCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCE
Q 010206 427 GCSEGSAESTTLEA-----SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENS 501 (515)
Q Consensus 427 ~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 501 (515)
|+.++.... .+.. ................++.++.|+.+++++.... +......+|...|.+++|+|++++
T Consensus 273 d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~ 348 (408)
T 4a11_B 273 NSSNGENTL-VNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG---EQITMLKGHYKTVDCCVFQSNFQE 348 (408)
T ss_dssp ETTTCCBCC-CCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC---CEEEEECCCSSCEEEEEEETTTTE
T ss_pred ECCCCccce-eccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCC---cceeeeccCCCeEEEEEEcCCCCE
Confidence 999875432 2221 1222333333445667778888999999432221 222233458899999999999999
Q ss_pred EEEEcCCc-EEEEe
Q 010206 502 IACAASNS-LYMYY 514 (515)
Q Consensus 502 la~~~~~~-~~i~~ 514 (515)
|++++.++ +.+|+
T Consensus 349 l~s~~~dg~i~iw~ 362 (408)
T 4a11_B 349 LYSGSRDCNILAWV 362 (408)
T ss_dssp EEEEETTSCEEEEE
T ss_pred EEEECCCCeEEEEe
Confidence 99888665 88886
No 97
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=5.4e-32 Score=257.71 Aligned_cols=288 Identities=15% Similarity=0.188 Sum_probs=214.9
Q ss_pred ceEEEEECCCCCeE-EeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccccee
Q 010206 37 IISAIEFDKSGDHL-ATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (515)
Q Consensus 37 ~v~~v~~s~~g~~l-asg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (515)
....++++|+...+ ++|+.||.|+||++...... ......+.+|. ..|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-------------------~~~~~~~~~h~------------~~V 84 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV-------------------DKNVPLVCGHT------------APV 84 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC-------------------CTTCCCBCCCS------------SCE
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC-------------------CCCCceEecCC------------CCE
Confidence 34568899887544 45788999999998654221 01223467787 889
Q ss_pred EEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCC
Q 010206 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (515)
Q Consensus 116 ~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 195 (515)
++++|+|. ++.+|++++.|++|++||+.++.......
T Consensus 85 ~~~~~~p~-~~~~l~s~s~dg~v~vw~~~~~~~~~~~~------------------------------------------ 121 (402)
T 2aq5_A 85 LDIAWCPH-NDNVIASGSEDCTVMVWEIPDGGLVLPLR------------------------------------------ 121 (402)
T ss_dssp EEEEECTT-CTTEEEEEETTSEEEEEECCTTCCSSCBC------------------------------------------
T ss_pred EEEEeCCC-CCCEEEEEeCCCeEEEEEccCCCCccccC------------------------------------------
Confidence 99999642 56799999999999999998764211000
Q ss_pred CCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCC-CEEEEe-CCCcEEEEeCCCCCcccceec
Q 010206 196 DSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVD 273 (515)
Q Consensus 196 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~ 273 (515)
.+... +.+|...|.+++|+|++ .+|+++ .|+.|++||+++++...
T Consensus 122 ----------------------------~~~~~-~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~---- 168 (402)
T 2aq5_A 122 ----------------------------EPVIT-LEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVL---- 168 (402)
T ss_dssp ----------------------------SCSEE-EECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEE----
T ss_pred ----------------------------CceEE-ecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccE----
Confidence 00111 36889999999999998 688888 89999999999765443
Q ss_pred ccCccc--cccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccc-eeEEEE
Q 010206 274 VKPANM--EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS-ISDIKF 350 (515)
Q Consensus 274 ~~~~~~--~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~ 350 (515)
.+ ..|...|.+++|+|++ .+|++++.|+.|++||+++++... .+. .+|.+. +.++.|
T Consensus 169 ----~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~----~~~-----------~~~~~~~~~~~~~ 228 (402)
T 2aq5_A 169 ----TLGPDVHPDTIYSVDWSRDG-ALICTSCRDKRVRVIEPRKGTVVA----EKD-----------RPHEGTRPVHAVF 228 (402)
T ss_dssp ----EECTTTCCSCEEEEEECTTS-SCEEEEETTSEEEEEETTTTEEEE----EEE-----------CSSCSSSCCEEEE
T ss_pred ----EEecCCCCCceEEEEECCCC-CEEEEEecCCcEEEEeCCCCceee----eec-----------cCCCCCcceEEEE
Confidence 34 5689999999999998 899999999999999999876432 110 234444 899999
Q ss_pred ccCCCEEEEE---c-CCeEEEEEeeCCCCCeeeEee-eccccccccccccCCCccceeeEEEcCCCCEEE-EecCCCcEE
Q 010206 351 ARNGRHILSR---D-YMTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFR 424 (515)
Q Consensus 351 s~~~~~l~s~---~-~~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~s~dg~i~ 424 (515)
+|++++|++| + ++.|++||++....++..... +... +..++|+|++++|+ +|+.||.|+
T Consensus 229 ~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---------------v~~~~~s~~~~~l~~~g~~dg~i~ 293 (402)
T 2aq5_A 229 VSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSG---------------VLLPFFDPDTNIVYLCGKGDSSIR 293 (402)
T ss_dssp CSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSS---------------CEEEEEETTTTEEEEEETTCSCEE
T ss_pred cCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCc---------------eeEEEEcCCCCEEEEEEcCCCeEE
Confidence 9999999998 4 499999999864433444332 2211 45899999999986 566899999
Q ss_pred EEecCCCCcceeeecc--CCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 425 VFGCSEGSAESTTLEA--SKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 425 iw~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+||+.+++.....+.. |..++..++|+|++.+++++ ++.+++
T Consensus 294 i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~--~~~~~~ 337 (402)
T 2aq5_A 294 YFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNK--CEIARF 337 (402)
T ss_dssp EEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGG--TEEEEE
T ss_pred EEEecCCCcceEeecccccCCcccceEEecccccceec--ceeEEE
Confidence 9999987543444544 45899999999999998764 557777
No 98
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-32 Score=253.81 Aligned_cols=279 Identities=13% Similarity=0.060 Sum_probs=202.4
Q ss_pred EEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEEE
Q 010206 41 IEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 120 (515)
Q Consensus 41 v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~ 120 (515)
..+.+++.+|++|+.||.|++||+.+++.. ..+. . ..|.++.|
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~-----------------------~~~~--~------------~~v~~~~~ 84 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTI-----------------------TTIT--T------------PNPRTGGE 84 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCE-----------------------EEEE--E------------ECCCTTCC
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEE-----------------------EEEe--c------------CCceeeee
Confidence 345568899999999999999999877643 1111 1 45777778
Q ss_pred eecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCC
Q 010206 121 CQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFP 200 (515)
Q Consensus 121 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~ 200 (515)
+|. +++++.|++|++|+.....
T Consensus 85 ~~~-----~~s~s~D~~i~~w~~~~~~----------------------------------------------------- 106 (343)
T 3lrv_A 85 HPA-----IISRGPCNRLLLLYPGNQI----------------------------------------------------- 106 (343)
T ss_dssp CCS-----EEEECSTTEEEEEETTTEE-----------------------------------------------------
T ss_pred CCc-----eEEecCCCeEEEEEccCce-----------------------------------------------------
Confidence 543 9999999999999987521
Q ss_pred CCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC--CCCEEEEe-CCCcEEEEeCCCCCcccceecccCc
Q 010206 201 PGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISA-DDLRINLWNLEISNQSFNIVDVKPA 277 (515)
Q Consensus 201 ~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~ 277 (515)
.+|+ +.. ....+....+|...|.+++|+| ++++|+++ .|++|++||+++++... +
T Consensus 107 -------~~~~--~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~------ 164 (343)
T 3lrv_A 107 -------TILD--SKT------NKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYI-V------ 164 (343)
T ss_dssp -------EEEE--TTT------CCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEE-E------
T ss_pred -------EEee--cCC------cceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEE-E------
Confidence 1111 000 1111222346778999999999 99999998 89999999999776531 1
Q ss_pred cccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccc-cccceeEEEEccCCCE
Q 010206 278 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE-IIASISDIKFARNGRH 356 (515)
Q Consensus 278 ~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~ 356 (515)
....+...+.+++|+|++ .+|++|+.||.|++||+++++... . .+.. |..+|.+++|+|++.+
T Consensus 165 ~~~~~~~~i~~~~~~pdg-~~lasg~~dg~i~iwd~~~~~~~~---~------------~~~~~h~~~v~~l~fs~~g~~ 228 (343)
T 3lrv_A 165 HSAKSDVEYSSGVLHKDS-LLLALYSPDGILDVYNLSSPDQAS---S------------RFPVDEEAKIKEVKFADNGYW 228 (343)
T ss_dssp ECCCSSCCCCEEEECTTS-CEEEEECTTSCEEEEESSCTTSCC---E------------ECCCCTTSCEEEEEECTTSSE
T ss_pred EecCCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCCCCc---c------------EEeccCCCCEEEEEEeCCCCE
Confidence 112356679999999998 899999999999999999876431 1 1344 7789999999999999
Q ss_pred EEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecC-CCcEEEEecCCCCcce
Q 010206 357 ILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNLFRVFGCSEGSAES 435 (515)
Q Consensus 357 l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~-dg~i~iw~~~~~~~~~ 435 (515)
|++++++.|++||+++ .+.+..+......... +. ..+++|+|+|++|++++. |+.+++|++.......
T Consensus 229 l~s~~~~~v~iwd~~~-~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~ 297 (343)
T 3lrv_A 229 MVVECDQTVVCFDLRK-DVGTLAYPTYTIPEFK---------TG-TVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNW 297 (343)
T ss_dssp EEEEESSBEEEEETTS-STTCBSSCCCBC--------------C-CEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSE
T ss_pred EEEEeCCeEEEEEcCC-CCcceeeccccccccc---------cc-ceEEEECCCCCEEEEecCCCCcEEEEEEcccccce
Confidence 9998888999999986 5555444332111000 00 025999999999999988 9999999997653322
Q ss_pred eeeccCCCceeeEEECC---CCCeeEeecCCCeEEE
Q 010206 436 TTLEASKNPMRRQVQTP---SRPSRPLGSLSGVVRR 468 (515)
Q Consensus 436 ~~~~~~~~~v~~~~~~~---~~~~l~s~~~d~~v~l 468 (515)
.. .++..+.+.+ +.+.+++++.|+.+++
T Consensus 298 -~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 328 (343)
T 3lrv_A 298 -TK----DEESALCLQSDTADFTDMDVVCGDGGIAA 328 (343)
T ss_dssp -EE----EEEEECCC----CCCCEEEEEEETTEEEE
T ss_pred -Ee----cCceeEecCccccccceeEEEecCCceEE
Confidence 11 5677888888 8889999999999888
No 99
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.7e-31 Score=254.12 Aligned_cols=247 Identities=19% Similarity=0.316 Sum_probs=202.1
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
.+|.+.|+||+|+|+|++||+|+.||.|+|||+.+++ .+..+.+|.
T Consensus 144 ~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~-----------------------~~~~~~~h~----------- 189 (420)
T 4gga_A 144 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-----------------------RLRNMTSHS----------- 189 (420)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----------------------EEEEECCCS-----------
T ss_pred cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc-----------------------EEEEEeCCC-----------
Confidence 3688899999999999999999999999999998766 345677887
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
..|.++.|. +..|++++.|+.+++||........
T Consensus 190 -~~v~~~s~~----~~~l~sgs~d~~i~~~d~~~~~~~~----------------------------------------- 223 (420)
T 4gga_A 190 -ARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHV----------------------------------------- 223 (420)
T ss_dssp -SCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEE-----------------------------------------
T ss_pred -CceEEEeeC----CCEEEEEeCCCceeEeeecccceee-----------------------------------------
Confidence 779998883 4589999999999999987543110
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccc
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 270 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 270 (515)
..+.+|...+..+.++|++++++++ .|+.+++|+..+.+....
T Consensus 224 ------------------------------------~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~ 267 (420)
T 4gga_A 224 ------------------------------------ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV 267 (420)
T ss_dssp ------------------------------------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSC
T ss_pred ------------------------------------EEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccce
Confidence 0035788999999999999999998 899999999987654322
Q ss_pred eecccCccccccCCceEEEEEecCCCcEEEEE--ecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYS--SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~--~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
.. .....|...|.+++|+|++..+++++ +.|+.|++||++++..... +. +...+.++
T Consensus 268 ~~----~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~----~~-------------~~~~v~~~ 326 (420)
T 4gga_A 268 PL----QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA----VD-------------AHSQVCSI 326 (420)
T ss_dssp CS----EEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE----EE-------------CSSCEEEE
T ss_pred ee----eeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee----ec-------------cccceeee
Confidence 11 24567889999999999886777764 4799999999998865321 11 12568999
Q ss_pred EEccCCCEEEEEc---CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEE
Q 010206 349 KFARNGRHILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 425 (515)
Q Consensus 349 ~~s~~~~~l~s~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~i 425 (515)
.|+|+++.+++++ ++.|+|||+.+ ++++.++.+|... |++++|+|||++|+||+.|++|+|
T Consensus 327 ~~~~~~~~lv~~sg~~d~~I~iwd~~~-~~~v~~l~gH~~~---------------V~~l~~spdg~~l~S~s~D~tvri 390 (420)
T 4gga_A 327 LWSPHYKELISGHGFAQNQLVIWKYPT-MAKVAELKGHTSR---------------VLSLTMSPDGATVASAAADETLRL 390 (420)
T ss_dssp EEETTTTEEEEEECTTTCCEEEEETTT-CCEEEEECCCSSC---------------EEEEEECTTSSCEEEEETTTEEEE
T ss_pred eecCCCCeEEEEEecCCCEEEEEECCC-CcEEEEEcCCCCC---------------EEEEEEcCCCCEEEEEecCCeEEE
Confidence 9999999988753 49999999996 8899999998765 669999999999999999999999
Q ss_pred EecCCC
Q 010206 426 FGCSEG 431 (515)
Q Consensus 426 w~~~~~ 431 (515)
||+...
T Consensus 391 Wdv~~~ 396 (420)
T 4gga_A 391 WRCFEL 396 (420)
T ss_dssp ECCSCS
T ss_pred EECCCC
Confidence 999765
No 100
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-31 Score=254.68 Aligned_cols=273 Identities=12% Similarity=0.142 Sum_probs=217.8
Q ss_pred eeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccC
Q 010206 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (515)
Q Consensus 114 ~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~ 193 (515)
.+.++.| ++ ..+++++.|+.|++||+.+++......... .+.+. .++|+|+++.+
T Consensus 95 ~~~~~~~--s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~-------~~~v~-------~v~~s~~~~~l------- 149 (401)
T 4aez_A 95 YLNLLDW--SN--LNVVAVALERNVYVWNADSGSVSALAETDE-------STYVA-------SVKWSHDGSFL------- 149 (401)
T ss_dssp TCBCEEE--CT--TSEEEEEETTEEEEEETTTCCEEEEEECCT-------TCCEE-------EEEECTTSSEE-------
T ss_pred eEEEEee--cC--CCEEEEECCCeEEEeeCCCCcEeEeeecCC-------CCCEE-------EEEECCCCCEE-------
Confidence 3566777 33 368889999999999999998776655421 23344 88999999998
Q ss_pred CCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccccee
Q 010206 194 SNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 272 (515)
Q Consensus 194 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 272 (515)
++++.+|.|++|| +... +.... +.+|...|.+++| +++.|+++ .|+.|++||++.......
T Consensus 150 -----~~~~~dg~i~iwd--~~~~------~~~~~-~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~-- 211 (401)
T 4aez_A 150 -----SVGLGNGLVDIYD--VESQ------TKLRT-MAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIG-- 211 (401)
T ss_dssp -----EEEETTSCEEEEE--TTTC------CEEEE-ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEE--
T ss_pred -----EEECCCCeEEEEE--CcCC------eEEEE-ecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceee--
Confidence 9999999999999 3332 22333 4689999999999 45788888 899999999985544332
Q ss_pred cccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEcc
Q 010206 273 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 352 (515)
Q Consensus 273 ~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 352 (515)
.+.+|...|.+++|+|++ .+|++|+.|+.|++||+++++... .+..|...|.+++|+|
T Consensus 212 -----~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~----------------~~~~~~~~v~~~~~~p 269 (401)
T 4aez_A 212 -----TLQGHSSEVCGLAWRSDG-LQLASGGNDNVVQIWDARSSIPKF----------------TKTNHNAAVKAVAWCP 269 (401)
T ss_dssp -----EEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCSSEEE----------------EECCCSSCCCEEEECT
T ss_pred -----EEcCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEccCCCCCccE----------------EecCCcceEEEEEECC
Confidence 557799999999999998 899999999999999998865421 1445678999999999
Q ss_pred CCC-EEEEEc---CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEE--ecCCCcEEEE
Q 010206 353 NGR-HILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT--GSYSNLFRVF 426 (515)
Q Consensus 353 ~~~-~l~s~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s--~s~dg~i~iw 426 (515)
++. ++++++ ++.|++||+.+ ++++..+..+. . +.+++|+|++++|++ |+.||.|++|
T Consensus 270 ~~~~ll~~~~gs~d~~i~i~d~~~-~~~~~~~~~~~-~---------------v~~~~~s~~~~~l~~~~g~~dg~i~v~ 332 (401)
T 4aez_A 270 WQSNLLATGGGTMDKQIHFWNAAT-GARVNTVDAGS-Q---------------VTSLIWSPHSKEIMSTHGFPDNNLSIW 332 (401)
T ss_dssp TSTTEEEEECCTTTCEEEEEETTT-CCEEEEEECSS-C---------------EEEEEECSSSSEEEEEECTTTCEEEEE
T ss_pred CCCCEEEEecCCCCCEEEEEECCC-CCEEEEEeCCC-c---------------EEEEEECCCCCeEEEEeecCCCcEEEE
Confidence 764 555654 59999999986 77777665322 1 559999999999998 5589999999
Q ss_pred ecCCCCcce-eeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 427 GCSEGSAES-TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 427 ~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
++.++.... ..+.+|...+..++++|++++|++++.||.|++
T Consensus 333 ~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~i 375 (401)
T 4aez_A 333 SYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKF 375 (401)
T ss_dssp EEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEE
T ss_pred ecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 999763332 457799999999999999999999999999999
No 101
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.7e-31 Score=254.79 Aligned_cols=269 Identities=16% Similarity=0.223 Sum_probs=216.8
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.+.|.+++|+ +++|++|+.||.|++||+.+++ ....+.+|.
T Consensus 155 ~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~-----------------------~~~~~~~h~---------- 199 (445)
T 2ovr_B 155 LVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGE-----------------------CIHTLYGHT---------- 199 (445)
T ss_dssp CCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTE-----------------------EEEEECCCS----------
T ss_pred EcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCc-----------------------EEEEECCCC----------
Confidence 45799999999998 5699999999999999998765 335677887
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|.++.|. +..+++++.|++|++||+.+++....
T Consensus 200 --~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~--------------------------------------- 234 (445)
T 2ovr_B 200 --STVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHV--------------------------------------- 234 (445)
T ss_dssp --SCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEE---------------------------------------
T ss_pred --CcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEE---------------------------------------
Confidence 889999993 34899999999999999987653221
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
+.+|...|.+++| +++.|+++ .|+.|++||+++.+...
T Consensus 235 ---------------------------------------~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~ 273 (445)
T 2ovr_B 235 ---------------------------------------LMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLH 273 (445)
T ss_dssp ---------------------------------------EECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEE
T ss_pred ---------------------------------------EcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeE
Confidence 2467788999998 67888888 89999999998765442
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
.+.+|...|.+++| ++ ..+++|+.|+.|++||+++++... . +.+|...+.++.
T Consensus 274 --------~~~~~~~~v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~~~~----~------------~~~~~~~v~~~~ 326 (445)
T 2ovr_B 274 --------TLQGHTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGNCIH----T------------LTGHQSLTSGME 326 (445)
T ss_dssp --------EECCCSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTCCEEE----E------------ECCCCSCEEEEE
T ss_pred --------EecCCCCceEEEEE--CC-CEEEEEeCCCeEEEEECCCCCEEE----E------------EcCCcccEEEEE
Confidence 55678999999999 55 799999999999999999876432 1 345667788887
Q ss_pred EccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEec
Q 010206 350 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 428 (515)
Q Consensus 350 ~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~ 428 (515)
++ ++++++|+. |.|++||+.+ ++++..+..+.... ..|++++|+ +++|++|+.||.|++||+
T Consensus 327 ~~--~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~------------~~v~~~~~~--~~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 327 LK--DNILVSGNADSTVKIWDIKT-GQCLQTLQGPNKHQ------------SAVTCLQFN--KNFVITSSDDGTVKLWDL 389 (445)
T ss_dssp EE--TTEEEEEETTSCEEEEETTT-CCEEEEECSTTSCS------------SCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred Ee--CCEEEEEeCCCeEEEEECCC-CcEEEEEccCCCCC------------CCEEEEEEC--CCEEEEEeCCCeEEEEEC
Confidence 75 668888765 9999999986 77777776532111 125578885 689999999999999999
Q ss_pred CCCCcceeee-----ccCCCceeeEEECCCCCeeEeecCCCe
Q 010206 429 SEGSAESTTL-----EASKNPMRRQVQTPSRPSRPLGSLSGV 465 (515)
Q Consensus 429 ~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~s~~~d~~ 465 (515)
.+++ ....+ ..|..++.+++++|++.++++|+.||+
T Consensus 390 ~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~ 430 (445)
T 2ovr_B 390 KTGE-FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 430 (445)
T ss_dssp TTCC-EEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred CCCc-eeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCC
Confidence 9884 44455 478899999999999999999999997
No 102
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-30 Score=252.21 Aligned_cols=325 Identities=14% Similarity=0.095 Sum_probs=214.5
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEcccCc---ccCccccCcccccccccCCccceeeeecccCCCc--------
Q 010206 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTR---DNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPE-------- 102 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-------- 102 (515)
...++.+++|+|||++|+++ .++.|++||+.+++ ........... .....+.....-...+.....+
T Consensus 3 ~~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (450)
T 2vdu_B 3 VIHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDK-IQESRNTTAKEQQGQSSENENENKKLKSNK 80 (450)
T ss_dssp EECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred ccccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCcccc-ccccccccchhhccccccccccccccccCc
Confidence 34688999999999977766 57799999998887 32111100000 0000000000000000000000
Q ss_pred --------cc---c-cccccccceeEEEEEeecCCCcEE-EeeeCCCeEEEEEcc--CCeeEEEeeccCCcccCCCCCCc
Q 010206 103 --------FD---Y-LKSLEIEEKINKIRWCQSANSALY-LLSTNDKTIKLWKVQ--EKKVKKVFDWNVHPEKAAGNGPI 167 (515)
Q Consensus 103 --------~~---~-~~~~~~~~~v~~l~~~~~~~~~~l-~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v 167 (515)
.. . ...-.+...|++++|+ +++.+| ++++.|+.|++||+. +++......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-------------- 144 (450)
T 2vdu_B 81 GDSIKRTAAKVPSPGLGAPPIYSYIRNLRLT--SDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-------------- 144 (450)
T ss_dssp -------------------CCCCCEEEEEEC--TTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE--------------
T ss_pred CccccccCccccCCCCCCCccCCceEEEEEc--CCCCEEEEEECCCCeEEEEECcCCCCceeeeee--------------
Confidence 00 0 0000122579999994 567786 888899999999987 544222111
Q ss_pred cCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCC
Q 010206 168 FGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE 247 (515)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 247 (515)
...|...|.+++|+|+++
T Consensus 145 --------------------------------------------------------------~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 145 --------------------------------------------------------------RFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp --------------------------------------------------------------EEECSSCEEEEEECTTSS
T ss_pred --------------------------------------------------------------cccCCCCceEEEEcCCCC
Confidence 124567899999999999
Q ss_pred EEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecC---CCcEEEEEecCCeEEEEecCccccccccc
Q 010206 248 TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSSKGSIRLIDMRQSALCDTHS 323 (515)
Q Consensus 248 ~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~---~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 323 (515)
+|+++ .++.|++|++.+....... ...+.+|...|++++|+|+ + .+|++|+.|+.|++||+++++....
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~~----~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~-- 235 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKFT----QEPILGHVSMLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQCFIVDK-- 235 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSCC----CCCSEECSSCEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCTTCEEE--
T ss_pred EEEEEeCCCcEEEEecCCccccccc----ceeeecccCceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCCceeee--
Confidence 99998 8999999999866543200 0255679999999999999 7 8999999999999999987754211
Q ss_pred ceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccc--------
Q 010206 324 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLY-------- 394 (515)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-------- 394 (515)
++.+|...|.+++|+ ++++|++++. +.|++||+.+ ++++..+..+..... .....
T Consensus 236 -------------~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 299 (450)
T 2vdu_B 236 -------------WLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKT-GKNLSTFDYNSLIKP-YLNDQHLAPPRFQ 299 (450)
T ss_dssp -------------ECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTT-CCEEEEEECHHHHGG-GCCTTSBC-----
T ss_pred -------------eecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCC-CcEeeeecchhhhhh-hhhhccccccccc
Confidence 134677899999999 9999999875 9999999996 777777765431100 00000
Q ss_pred ---cCCCccceeeEEEcCCCCEEEEec-CCCcEEEEec--CCCC--cceeeeccCCCceeeEEECCCCCeeEeecC
Q 010206 395 ---ENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGC--SEGS--AESTTLEASKNPMRRQVQTPSRPSRPLGSL 462 (515)
Q Consensus 395 ---~~~~~~~v~~~~~s~~~~~l~s~s-~dg~i~iw~~--~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 462 (515)
....-..+..++|+|++++|++++ .|+.|++|++ .++. .....+..| ..+..++++|++.+++.++.
T Consensus 300 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~ 374 (450)
T 2vdu_B 300 NENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNK 374 (450)
T ss_dssp -----CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCT
T ss_pred ccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecc
Confidence 001112366899999999999998 8999999999 4432 233567777 88999999996555555554
No 103
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=2.3e-31 Score=251.88 Aligned_cols=229 Identities=14% Similarity=0.136 Sum_probs=151.9
Q ss_pred eccCcCCeEEEEecC--------CCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEE
Q 010206 230 AHAHDYHINSISNNS--------DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA 300 (515)
Q Consensus 230 ~~~~~~~v~~~~~~~--------~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~ 300 (515)
+.+|...|++++|+| ++++|+++ .|++|++||+++..... .+..|...+.+++|+|++.++|+
T Consensus 132 ~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~--------~~~~~~~~v~~v~~~p~~~~~l~ 203 (393)
T 4gq1_A 132 KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL--------AGYPLSSPGISVQFRPSNPNQLI 203 (393)
T ss_dssp TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE--------EEEECSSCEEEEEEETTEEEEEE
T ss_pred cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceee--------eecCCCCCcEEEEECCCCCceEE
Confidence 468999999999998 78999998 89999999998765443 44568899999999999756899
Q ss_pred EEecCCeEEEEecCcccccccccceeeecc---------CCCccccccccccceeEEEEc-cCCCEEEEEcC-CeEEEEE
Q 010206 301 YSSSKGSIRLIDMRQSALCDTHSKLFEEQE---------APGTRSFFTEIIASISDIKFA-RNGRHILSRDY-MTLKLWD 369 (515)
Q Consensus 301 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~i~~~~~s-~~~~~l~s~~~-~~i~iwd 369 (515)
+|+.|+.|++||+++++............. .........+|...+.++.|+ |+++.|++++. +++++||
T Consensus 204 ~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd 283 (393)
T 4gq1_A 204 VGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWN 283 (393)
T ss_dssp EEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEE
T ss_pred ecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEE
Confidence 999999999999998764332111110000 001112245688899999997 79999999875 9999999
Q ss_pred eeCCCCCeeeEeeecccccccccc---ccCCCccceeeEEEcC--CCCEEEEecCCCcEEEEecCCCCcceeeeccCCCc
Q 010206 370 INMDSGPVATFQVHEHLRPKLCDL---YENDSIFDKFECCLSG--DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNP 444 (515)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~--~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~ 444 (515)
+.. .+....+..+.......... .............|+| ++.++++|+.||.|++||+.++.. ...+..|..+
T Consensus 284 ~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~-~~~~~~~~~~ 361 (393)
T 4gq1_A 284 LFA-NNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDS-NSIPIQLGMP 361 (393)
T ss_dssp C--------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTC-CEEEEECSSC
T ss_pred Ccc-CCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcE-EEEecCCCCc
Confidence 986 55555555444322211100 0000000112344554 445678899999999999998744 4667788899
Q ss_pred eeeEEECCCCCeeEeecCCCeEEE
Q 010206 445 MRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 445 v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
|.+++|+|+|++||+++.+|.+.+
T Consensus 362 V~svafspdG~~LA~as~~Gv~lv 385 (393)
T 4gq1_A 362 IVDFCWHQDGSHLAIATEGSVLLT 385 (393)
T ss_dssp EEEEEECTTSSEEEEEESSEEEEE
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEE
Confidence 999999999999999998887555
No 104
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-32 Score=260.60 Aligned_cols=282 Identities=9% Similarity=0.046 Sum_probs=202.1
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
....|.+++| ++||+++++++.|++|+ |...++.. . .+ ...++ .++|+|+|.
T Consensus 14 ~~~~v~sv~~--SpDG~~iASas~D~TV~--d~~~~~~l---~--gh------~~~v~-------~V~FsPdg~------ 65 (588)
T 2j04_A 14 FEDWKNNLTW--ARDGTLYLTTFPDISIG--QPKYAKDI---N--CN------SKNLF-------HVKEFPLEF------ 65 (588)
T ss_dssp CSSSSCCEEE--CTTSCEEEECSSSEEEE--EECCCSCC---S--SB------GGGTE-------EEEEECCCC------
T ss_pred hhccEEEEEE--CCCCCEEEEEcCCceee--ccccccee---c--CC------CccEE-------EEEECCCCC------
Confidence 3478999999 67899999999999999 65444322 1 11 23455 889999883
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
+ +.|+ +++.+... .+...|...|.+++|+|+|+.|+++ .||.|++||.+. ..
T Consensus 66 -------------~---~~~~--~~~~~~~~------~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---~l 118 (588)
T 2j04_A 66 -------------E---NKLD--FELAQQNG------LLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---ML 118 (588)
T ss_dssp -------------C---CTTT--TSCCCSSC------SSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---EE
T ss_pred -------------c---ceEE--EEeCCCce------EeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---ee
Confidence 1 2233 23222211 1112557889999999999999998 899999999643 21
Q ss_pred ceecccCccccccCC-----ceEEEEEecCCCcEEEEEecCCeEEEEecCccccccc---ccceeeeccCCCcccccccc
Q 010206 270 NIVDVKPANMEDLTE-----VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT---HSKLFEEQEAPGTRSFFTEI 341 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~-----~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 341 (515)
. .+. |.. .+.+++|+|+| ++|++|+.||+|++||+..+..... ....+..+ ..+|
T Consensus 119 ~-------~l~-~~~~~~~~sv~svafSPDG-~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~--------~~gh 181 (588)
T 2j04_A 119 T-------NLD-SKGNLSSRTYHCFEWNPIE-SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLS--------DAGS 181 (588)
T ss_dssp E-------ECC-CSSCSTTTCEEEEEECSSS-SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECS--------CTTC
T ss_pred e-------ecc-CCCccccccEEEEEEcCCC-CEEEEEcCCCEEEEEECCCCccccccceeeeeeecc--------cccc
Confidence 1 233 443 59999999999 9999999999999999988643110 01222211 2567
Q ss_pred ccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCC---eeeEe-eeccccccccccccCCCccceeeEEEcCCCCEEEEe
Q 010206 342 IASISDIKFARNGRHILSRDYMTLKLWDINMDSGP---VATFQ-VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 417 (515)
Q Consensus 342 ~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 417 (515)
...|.+++|+|+| +++++.|++|++||+.. +.. ..++. +|... |.+++|+ |++||++
T Consensus 182 ~~~V~sVawSPdg-Laass~D~tVrlWd~~~-~~~~~~~~tL~~~h~~~---------------V~svaFs--g~~LASa 242 (588)
T 2j04_A 182 KDWVTHIVWYEDV-LVAALSNNSVFSMTVSA-SSHQPVSRMIQNASRRK---------------ITDLKIV--DYKVVLT 242 (588)
T ss_dssp CCCEEEEEEETTE-EEEEETTCCEEEECCCS-SSSCCCEEEEECCCSSC---------------CCCEEEE--TTEEEEE
T ss_pred cccEEEEEEcCCc-EEEEeCCCeEEEEECCC-CccccceeeecccccCc---------------EEEEEEE--CCEEEEE
Confidence 7899999999999 55556679999999985 442 24453 45433 4589999 6899988
Q ss_pred cCCCcEEEEecCCCCcceeeeccCCCceeeEEE--CCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEE
Q 010206 418 SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ--TPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAW 495 (515)
Q Consensus 418 s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 495 (515)
+ +++|++||+.++. ......+|...+..+++ +|+++.++++++||+ +++.. . .+++
T Consensus 243 ~-~~tIkLWd~~~~~-~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~---------------d----~~~~ 300 (588)
T 2j04_A 243 C-PGYVHKIDLKNYS-ISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLE---------------D----ELHV 300 (588)
T ss_dssp C-SSEEEEEETTTTE-EEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEES---------------S----SEEE
T ss_pred e-CCeEEEEECCCCe-EEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEee---------------c----cEEE
Confidence 7 6999999999763 32223389999999999 999999999999999 77211 1 2558
Q ss_pred cCCCCEEEEE
Q 010206 496 HPSENSIACA 505 (515)
Q Consensus 496 s~~~~~la~~ 505 (515)
+||+..++..
T Consensus 301 spd~~l~a~~ 310 (588)
T 2j04_A 301 TADNIIAPYL 310 (588)
T ss_dssp ECCCSSHHHH
T ss_pred CCCceEEEEc
Confidence 8888776654
No 105
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.5e-30 Score=242.59 Aligned_cols=285 Identities=11% Similarity=0.124 Sum_probs=197.4
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
..|.+.|++++|+|||++||+|+.+| ++||++.+.+.. . ..+.
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~-----------------------~--~~~~----------- 58 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHI-----------------------M--SQEM----------- 58 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEE-----------------------E--EEEC-----------
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCccee-----------------------e--eeec-----------
Confidence 56899999999999999999998776 789998755421 1 1111
Q ss_pred cceeEEEEEeecCCCcEE-EeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 112 EEKINKIRWCQSANSALY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..+..+++.+.. +.+ ++++.|++|++||+.+++.....
T Consensus 59 -~~~~~~~~~~~~--~~~~~~~~~d~~v~iWd~~~~~~~~~~-------------------------------------- 97 (355)
T 3vu4_A 59 -RHLSKVRMLHRT--NYVAFVTGVKEVVHIWDDVKKQDVSRI-------------------------------------- 97 (355)
T ss_dssp -SCCCEEEECTTS--SEEEEECSSTTEEEEEETTTTEEEEEE--------------------------------------
T ss_pred -CCeEEEEEcCCC--CEEEEEECCccEEEEEECCCCcEEEEE--------------------------------------
Confidence 236777775443 355 56788899999999887643321
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCC-Cccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEIS-NQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~-~~~~ 269 (515)
.+...|.+++++++. ++++.|+.|++||+.+. +...
T Consensus 98 -----------------------------------------~~~~~v~~v~~~~~~--~~~~~~~~i~i~d~~~~~~~~~ 134 (355)
T 3vu4_A 98 -----------------------------------------KVDAPVKDLFLSREF--IVVSYGDVISVFKFGNPWKRIT 134 (355)
T ss_dssp -----------------------------------------ECSSCEEEEEECSSE--EEEEETTEEEEEESSTTCCBSS
T ss_pred -----------------------------------------ECCCceEEEEEcCCE--EEEEEcCEEEEEECCCCceeeE
Confidence 133578889988764 55566889999999876 3332
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEE--EecCCeEEEEecCcccccccccceeeeccCCCc-ccccccccccee
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAY--SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT-RSFFTEIIASIS 346 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~--~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~ 346 (515)
.+.. +...+++++ . .+++ |+.||.|++||++++............. ...+ ...+.+|..+|.
T Consensus 135 --------~~~~---~~~~~~~s~-~--~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~-~~~p~~~~~~~h~~~v~ 199 (355)
T 3vu4_A 135 --------DDIR---FGGVCEFSN-G--LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQK-AILGKGVLIKAHTNPIK 199 (355)
T ss_dssp --------CCEE---EEEEEEEET-T--EEEEEESSCTTCEEEEECCC-------------------CCEEECCCSSCEE
T ss_pred --------Eecc---CCceEEEEc-c--EEEEeCCCcCcEEEEEECCCCCcccccccccccc-ccCcccEEEEccCCceE
Confidence 2222 445566777 3 4444 6889999999998765211100000000 0001 234678999999
Q ss_pred EEEEccCCCEEEEEcC-Ce-EEEEEeeCCCCCeeeEe-e-eccccccccccccCCCccceeeEEEcCCCCEEEEecCCCc
Q 010206 347 DIKFARNGRHILSRDY-MT-LKLWDINMDSGPVATFQ-V-HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 422 (515)
Q Consensus 347 ~~~~s~~~~~l~s~~~-~~-i~iwd~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~ 422 (515)
+++|+|+|++|++|+. ++ |++||+++ ++++..+. + |... |.+++|+|++++|++++.|++
T Consensus 200 ~~~~s~~g~~l~s~s~d~~~v~iwd~~~-~~~~~~~~~g~h~~~---------------v~~~~~s~~~~~l~s~s~d~~ 263 (355)
T 3vu4_A 200 MVRLNRKSDMVATCSQDGTIIRVFKTED-GVLVREFRRGLDRAD---------------VVDMKWSTDGSKLAVVSDKWT 263 (355)
T ss_dssp EEEECTTSSEEEEEETTCSEEEEEETTT-CCEEEEEECTTCCSC---------------EEEEEECTTSCEEEEEETTCE
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEECCC-CcEEEEEEcCCCCCc---------------EEEEEECCCCCEEEEEECCCE
Confidence 9999999999999875 98 99999996 88888887 3 5544 569999999999999999999
Q ss_pred EEEEecCCCCcce-eeec---------------------cCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 423 FRVFGCSEGSAES-TTLE---------------------ASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 423 i~iw~~~~~~~~~-~~~~---------------------~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
|++||++...... ..+. .+..+...++|+++++.+++++.||.+++
T Consensus 264 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~ 331 (355)
T 3vu4_A 264 LHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIET 331 (355)
T ss_dssp EEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEE
T ss_pred EEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEE
Confidence 9999998653211 1111 11223467899999999999999999988
No 106
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=8.8e-31 Score=244.37 Aligned_cols=305 Identities=15% Similarity=0.127 Sum_probs=193.5
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
+.|++++|+ +++.+|++++.||.|++||+.++.....
T Consensus 12 ~~v~~~~~~--~~~~~l~~~~~dg~i~iw~~~~~~~~~~----------------------------------------- 48 (351)
T 3f3f_A 12 DLVHDVVYD--FYGRHVATCSSDQHIKVFKLDKDTSNWE----------------------------------------- 48 (351)
T ss_dssp SCEEEEEEC--SSSSEEEEEETTSEEEEEEECSSSCCEE-----------------------------------------
T ss_pred cceeEEEEc--CCCCEEEEeeCCCeEEEEECCCCCCcce-----------------------------------------
Confidence 889999995 5677999999999999999986531110
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC--CCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
.... +.+|...|.+++|+| ++++|+++ .|+.|++||+++.....
T Consensus 49 --------------------------------~~~~-~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~ 95 (351)
T 3f3f_A 49 --------------------------------LSDS-WRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEEC 95 (351)
T ss_dssp --------------------------------EEEE-EECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTT
T ss_pred --------------------------------ecce-eccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccc
Confidence 0001 357889999999999 69999998 89999999998764321
Q ss_pred ceecc-cCccccccCCceEEEEEecC--CCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccccee
Q 010206 270 NIVDV-KPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 346 (515)
Q Consensus 270 ~~~~~-~~~~~~~~~~~i~~i~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 346 (515)
..... ....+..|...|.+++|+|+ + .+|++++.||.|++||+++++........-... ........|...+.
T Consensus 96 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 171 (351)
T 3f3f_A 96 SGRRWNKLCTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDLRSWTLTSEMK---VLSIPPANHLQSDF 171 (351)
T ss_dssp SSCSEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEE---SCSCCCSSCSCCCE
T ss_pred cccCcceeeeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHhcccccccccc---ccccccCCccccee
Confidence 00000 00255679999999999999 8 899999999999999999876543211100000 00111235678899
Q ss_pred EEEEccC---CCEEEEEcC-CeEEEEEeeCCCCC--eeeEeeeccccccccccccCCCccceeeEEEcCCC----CEEEE
Q 010206 347 DIKFARN---GRHILSRDY-MTLKLWDINMDSGP--VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG----GRVAT 416 (515)
Q Consensus 347 ~~~~s~~---~~~l~s~~~-~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~s 416 (515)
+++|+|+ +.++++++. +.+.+|+... ++. +..+.+|... |++++|+|++ ++|++
T Consensus 172 ~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~---------------i~~~~~~p~~~~~~~~l~s 235 (351)
T 3f3f_A 172 CLSWCPSRFSPEKLAVSALEQAIIYQRGKD-GKLHVAAKLPGHKSL---------------IRSISWAPSIGRWYQLIAT 235 (351)
T ss_dssp EEEECCCSSSCCEEEEEETTEEEEEEECTT-SCEEEEEECCCCCSC---------------EEEEEECCCSSCSSEEEEE
T ss_pred EEEeccCCCCCcEEEEecCCCcEEEEccCC-CceeeeeecCCCCcc---------------eeEEEECCCCCCcceEEEE
Confidence 9999997 889998875 7776666653 443 4445555443 5699999998 89999
Q ss_pred ecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE-ecCCCCCccccCCccccccCCeeEEEE
Q 010206 417 GSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR-VKGADNSALDANGNAFDFSMKLLHLAW 495 (515)
Q Consensus 417 ~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l-~~~~~~~~~~~~~~~~~~~~~i~~~~~ 495 (515)
++.||.|++||+.++... .....+..........+....++.+..++.... ..-+............+|...|++++|
T Consensus 236 ~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 314 (351)
T 3f3f_A 236 GCKDGRIRIFKITEKLSP-LASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSW 314 (351)
T ss_dssp EETTSCEEEEEEEECC----------------------------------------CCSEEEEEEEEECTTSSCEEEEEE
T ss_pred EcCCCeEEEEeCCCCcCc-cccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEE
Confidence 999999999999876333 233333333444444455444444444333221 111111111222233458889999999
Q ss_pred cCCCCEEEEEcCCc-EEEEe
Q 010206 496 HPSENSIACAASNS-LYMYY 514 (515)
Q Consensus 496 s~~~~~la~~~~~~-~~i~~ 514 (515)
+|++++|++++.|+ +.+|+
T Consensus 315 s~~~~~l~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 315 NLTGTILSSAGDDGKVRLWK 334 (351)
T ss_dssp CSSSCCEEEEETTSCEEEEE
T ss_pred cCCCCEEEEecCCCcEEEEe
Confidence 99999999888665 89996
No 107
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=5.9e-30 Score=235.61 Aligned_cols=276 Identities=11% Similarity=0.168 Sum_probs=213.0
Q ss_pred eEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCC
Q 010206 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (515)
Q Consensus 115 v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~ 194 (515)
.+.|+|+ +++ +|++ +.|++|++||+.+++.......+.+. ..|. +++|+|+|+.+
T Consensus 28 ~~~l~WS--~~~-~lAv-g~D~tV~iWd~~tg~~~~~~~~~~~~------~~V~-------~v~~~~~~~~l-------- 82 (318)
T 4ggc_A 28 LNLVDWS--SGN-VLAV-ALDNSVYLWSASSGDILQLLQMEQPG------EYIS-------SVAWIKEGNYL-------- 82 (318)
T ss_dssp CBCEEEC--TTS-EEEE-EETTEEEEEETTTCCEEEEEECCSTT------CCEE-------EEEECTTSSEE--------
T ss_pred ceEEEEC--CCC-EEEE-EeCCEEEEEECCCCCEEEEEEecCCC------CeEE-------EEEECCCCCEE--------
Confidence 5779995 443 5555 56999999999999888776654332 3344 88999999999
Q ss_pred CCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceec
Q 010206 195 NDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 273 (515)
Q Consensus 195 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~ 273 (515)
++|+.|+.|++|+ +.. .++.+. ..+|...+.++.+ ++..++++ .++.+++|+.........
T Consensus 83 ----~sgs~Dg~v~iw~--~~~------~~~~~~-~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~--- 144 (318)
T 4ggc_A 83 ----AVGTSSAEVQLWD--VQQ------QKRLRN-MTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVA--- 144 (318)
T ss_dssp ----EEEETTSEEEEEE--TTT------TEEEEE-EECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEE---
T ss_pred ----EEEECCCcEEEee--cCC------ceeEEE-ecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEE---
Confidence 9999999999999 333 233333 4688888776654 56789988 899999999886654432
Q ss_pred ccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccC
Q 010206 274 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 353 (515)
Q Consensus 274 ~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 353 (515)
.+.+|...+..+.+.+++ .+|++++.|+.|++||+++++........ ...|.+.|.++.++|+
T Consensus 145 ----~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------------~~~~~~~v~~~~~~~~ 207 (318)
T 4ggc_A 145 ----TLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQT------------FTQHQGAVKAVAWCPW 207 (318)
T ss_dssp ----EEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCSEE------------ECCCCSCEEEEEECTT
T ss_pred ----EEcCccCceEEEEEcCCC-CEEEEEecCcceeEEECCCCcccccceee------------ecccCCceEEEEecCC
Confidence 557799999999999998 89999999999999999987643221111 2345578999999997
Q ss_pred CCEEE---EEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEe--cCCCcEEEEe
Q 010206 354 GRHIL---SRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG--SYSNLFRVFG 427 (515)
Q Consensus 354 ~~~l~---s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~--s~dg~i~iw~ 427 (515)
+..++ +++. +.|++||... ........ +... +..++|+|+++.++++ +.|+.|++||
T Consensus 208 ~~~~~~~~~~~~~~~i~lwd~~~-~~~~~~~~-~~~~---------------v~~~~~~~~~~~~~~~sg~~d~~i~iwd 270 (318)
T 4ggc_A 208 QSNVLATGGGTSDRHIRIWNVCS-GACLSAVD-AHSQ---------------VCSILWSPHYKELISGHGFAQNQLVIWK 270 (318)
T ss_dssp STTEEEEEECTTTCEEEEEETTT-CCEEEEEE-CSSC---------------EEEEEEETTTTEEEEEECTTTCCEEEEE
T ss_pred CCcEEEEEecCCCCEEEEEeccc-cccccccc-ceee---------------eeeeeecccccceEEEEEcCCCEEEEEE
Confidence 65443 3444 9999999985 44433332 2222 4589999999988765 4899999999
Q ss_pred cCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 428 CSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
++++ ..+.++++|..+|++++|+|++++|+||+.||+|++
T Consensus 271 ~~~~-~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~i 310 (318)
T 4ggc_A 271 YPTM-AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 310 (318)
T ss_dssp TTTC-CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEE
T ss_pred CCCC-cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEE
Confidence 9987 556899999999999999999999999999999999
No 108
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-30 Score=246.22 Aligned_cols=249 Identities=16% Similarity=0.168 Sum_probs=197.9
Q ss_pred eeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCC
Q 010206 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (515)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (515)
...+.+|. ..|++++|+ +++.+|++++.|+.|++||+.........
T Consensus 4 ~~~~~~h~------------~~v~~~~~s--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-------------------- 49 (379)
T 3jrp_A 4 VVIANAHN------------ELIHDAVLD--YYGKRLATCSSDKTIKIFEVEGETHKLID-------------------- 49 (379)
T ss_dssp -CCEEECC------------CCEEEEEEC--SSSSEEEEEETTSCEEEEEEETTEEEEEE--------------------
T ss_pred cEEecCCc------------ccEEEEEEc--CCCCEEEEEECCCcEEEEecCCCcceeee--------------------
Confidence 34577887 889999995 56779999999999999999754321110
Q ss_pred cCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC--CCEEE
Q 010206 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFI 250 (515)
Q Consensus 173 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~ 250 (515)
. +.+|...|.+++|+++ +++|+
T Consensus 50 -------------------------------------------------------~-~~~h~~~v~~~~~~~~~~~~~l~ 73 (379)
T 3jrp_A 50 -------------------------------------------------------T-LTGHEGPVWRVDWAHPKFGTILA 73 (379)
T ss_dssp -------------------------------------------------------E-ECCCSSCEEEEEECCGGGCSEEE
T ss_pred -------------------------------------------------------E-ecCCCCcEEEEEeCCCCCCCEEE
Confidence 0 3578899999999987 89999
Q ss_pred Ee-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecC--CCcEEEEEecCCeEEEEecCcccccccccceee
Q 010206 251 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 327 (515)
Q Consensus 251 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 327 (515)
++ .|+.|++||+++.+.... ..+..|...|.+++|+|+ + .+|++++.|+.|++||+++.....
T Consensus 74 s~~~dg~v~iwd~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~------- 139 (379)
T 3jrp_A 74 SCSYDGKVLIWKEENGRWSQI------AVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTS------- 139 (379)
T ss_dssp EEETTSCEEEEEEETTEEEEE------EEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCCC-------
T ss_pred EeccCCEEEEEEcCCCceeEe------eeecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCcee-------
Confidence 98 899999999987642111 145678999999999999 7 899999999999999998764321
Q ss_pred eccCCCccccccccccceeEEEEcc-------------CCCEEEEEcC-CeEEEEEeeCCCCC----eeeEeeecccccc
Q 010206 328 EQEAPGTRSFFTEIIASISDIKFAR-------------NGRHILSRDY-MTLKLWDINMDSGP----VATFQVHEHLRPK 389 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~s~-------------~~~~l~s~~~-~~i~iwd~~~~~~~----~~~~~~~~~~~~~ 389 (515)
...+.+|...|.+++|+| ++.+|++++. +.|++||++. ... ...+.+|...
T Consensus 140 -------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~h~~~--- 208 (379)
T 3jrp_A 140 -------PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS-DAQTYVLESTLEGHSDW--- 208 (379)
T ss_dssp -------EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEET-TTTEEEEEEEECCCSSC---
T ss_pred -------eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecC-CCcceeeEEEEecccCc---
Confidence 112455778999999999 6999999875 9999999986 432 2344445433
Q ss_pred ccccccCCCccceeeEEEcCC---CCEEEEecCCCcEEEEecCCCCcc----eeeeccCCCceeeEEECCCCCeeEeecC
Q 010206 390 LCDLYENDSIFDKFECCLSGD---GGRVATGSYSNLFRVFGCSEGSAE----STTLEASKNPMRRQVQTPSRPSRPLGSL 462 (515)
Q Consensus 390 ~~~~~~~~~~~~v~~~~~s~~---~~~l~s~s~dg~i~iw~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 462 (515)
|.+++|+|+ +++|++++.||.|++||+.++... ......|...+.+++|+|++++|++++.
T Consensus 209 ------------v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 276 (379)
T 3jrp_A 209 ------------VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG 276 (379)
T ss_dssp ------------EEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEES
T ss_pred ------------EeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecC
Confidence 569999999 899999999999999999976322 2233458899999999999999999999
Q ss_pred CCeEEE
Q 010206 463 SGVVRR 468 (515)
Q Consensus 463 d~~v~l 468 (515)
||.|++
T Consensus 277 dg~i~i 282 (379)
T 3jrp_A 277 DNKVTL 282 (379)
T ss_dssp SSSEEE
T ss_pred CCcEEE
Confidence 999999
No 109
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.8e-31 Score=252.50 Aligned_cols=259 Identities=10% Similarity=0.104 Sum_probs=163.1
Q ss_pred ccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEec--------CCCcEEEE
Q 010206 231 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP--------THCNMLAY 301 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p--------~~~~~l~~ 301 (515)
..|........+.+++.+|+++ .|++|++||++.+....... ...+.+|.+.|.+++|+| ++ ++|++
T Consensus 86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~---~~~~~gH~~~v~~v~~~p~~~~~~~~d~-~~las 161 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHV---LGGKSGHHNFVNDIDIADVYSADNRLAE-QVIAS 161 (393)
T ss_dssp C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEE---ECTTTSCSSCEEEEEEEEEECTTCSEEE-EEEEE
T ss_pred cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeee---ecccCCCCCceEEEEEccccccccCCCC-CEEEE
Confidence 3455555666677788889998 89999999998765332110 025789999999999998 66 89999
Q ss_pred EecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCC-EEEEEcC-CeEEEEEeeCCCCCeee
Q 010206 302 SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HILSRDY-MTLKLWDINMDSGPVAT 379 (515)
Q Consensus 302 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~~-~~i~iwd~~~~~~~~~~ 379 (515)
|+.|++|+|||++++.... .+.+|..++.+++|+|++. +|++++. ++|++||+++ ++....
T Consensus 162 ~s~D~tv~~Wd~~~~~~~~----------------~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t-~~~~~~ 224 (393)
T 4gq1_A 162 VGDDCTLIIWRLTDEGPIL----------------AGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTL-NLSAEE 224 (393)
T ss_dssp EETTSEEEEEEEETTEEEE----------------EEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC-CC----
T ss_pred EECCCeEEEEECCCCceee----------------eecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCC-Cccccc
Confidence 9999999999998765321 1345668899999999874 7888765 9999999986 444333
Q ss_pred Eeeeccccccc----------cccccCCCccceeeEEEc-CCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeE
Q 010206 380 FQVHEHLRPKL----------CDLYENDSIFDKFECCLS-GDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQ 448 (515)
Q Consensus 380 ~~~~~~~~~~~----------~~~~~~~~~~~v~~~~~s-~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~ 448 (515)
...+....... ...........+.++.|+ +|++.|++++.|+.+++||+..+. ....+..|...+..+
T Consensus 225 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~-~~~~l~~~~~~~~~~ 303 (393)
T 4gq1_A 225 NSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANN-DYNEISDSTMKLGPK 303 (393)
T ss_dssp ------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------
T ss_pred ccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCC-CCceEeeecCccccE
Confidence 32221111000 000001112235578876 799999999999999999998763 334444444333333
Q ss_pred E------------------ECC--CCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCC
Q 010206 449 V------------------QTP--SRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASN 508 (515)
Q Consensus 449 ~------------------~~~--~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~ 508 (515)
. +.| ++.++++|+.||.|++++.... ........|...|.+++|||||++||+++++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~---~~~~~~~~~~~~V~svafspdG~~LA~as~~ 380 (393)
T 4gq1_A 304 NLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEK---DSNSIPIQLGMPIVDFCWHQDGSHLAIATEG 380 (393)
T ss_dssp CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCT---TCCEEEEECSSCEEEEEECTTSSEEEEEESS
T ss_pred EEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCC---cEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 2 222 4456788999999999432221 2233445678899999999999999999999
Q ss_pred cEEEEe
Q 010206 509 SLYMYY 514 (515)
Q Consensus 509 ~~~i~~ 514 (515)
++++|.
T Consensus 381 Gv~lvr 386 (393)
T 4gq1_A 381 SVLLTR 386 (393)
T ss_dssp EEEEEE
T ss_pred CeEEEE
Confidence 999885
No 110
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2.7e-31 Score=252.86 Aligned_cols=280 Identities=13% Similarity=0.126 Sum_probs=206.2
Q ss_pred CCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC-CCCEEEEe-CCCcEEEEeCCCCCcccceecccC
Q 010206 199 FPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVKP 276 (515)
Q Consensus 199 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~ 276 (515)
++++.+|.|++|+ +...... ...... +.+|...|.+++|+| ++++|+++ .|+.|++||+.+........ ...
T Consensus 51 ~~~~~~g~i~v~~--~~~~~~~--~~~~~~-~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~-~~~ 124 (402)
T 2aq5_A 51 CEASGGGAFLVLP--LGKTGRV--DKNVPL-VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR-EPV 124 (402)
T ss_dssp BCCSSSCCEEEEE--TTCCEEC--CTTCCC-BCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBC-SCS
T ss_pred EEEcCCCEEEEEE--CccCCCC--CCCCce-EecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccC-Cce
Confidence 5688999999999 4322111 011112 468999999999999 99999998 89999999998764221100 011
Q ss_pred ccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCE
Q 010206 277 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH 356 (515)
Q Consensus 277 ~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 356 (515)
..+.+|...|.+++|+|++.++|++++.|+.|++||+++++.... +. ..+|...|.+++|+|++++
T Consensus 125 ~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~----------~~~~~~~v~~~~~~~~~~~ 190 (402)
T 2aq5_A 125 ITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLT----LG----------PDVHPDTIYSVDWSRDGAL 190 (402)
T ss_dssp EEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEE----EC----------TTTCCSCEEEEEECTTSSC
T ss_pred EEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEE----Ee----------cCCCCCceEEEEECCCCCE
Confidence 256789999999999999756999999999999999998764321 10 0457789999999999999
Q ss_pred EEEEcC-CeEEEEEeeCCCCCeeeE-eeeccccccccccccCCCccceeeEEEcCCCCEEEEe---cCCCcEEEEecCCC
Q 010206 357 ILSRDY-MTLKLWDINMDSGPVATF-QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG---SYSNLFRVFGCSEG 431 (515)
Q Consensus 357 l~s~~~-~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~---s~dg~i~iw~~~~~ 431 (515)
|++++. +.|++||+++ ++.+..+ ..|.... +..++|+|++++|++| +.|+.|++||+.++
T Consensus 191 l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 191 ICTSCRDKRVRVIEPRK-GTVVAEKDRPHEGTR--------------PVHAVFVSEGKILTTGFSRMSERQVALWDTKHL 255 (402)
T ss_dssp EEEEETTSEEEEEETTT-TEEEEEEECSSCSSS--------------CCEEEECSTTEEEEEEECTTCCEEEEEEETTBC
T ss_pred EEEEecCCcEEEEeCCC-CceeeeeccCCCCCc--------------ceEEEEcCCCcEEEEeccCCCCceEEEEcCccc
Confidence 999865 9999999986 6666666 4554321 3489999999999999 89999999999987
Q ss_pred Ccceeeec-cCCCceeeEEECCCCCeeE-eecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCc
Q 010206 432 SAESTTLE-ASKNPMRRQVQTPSRPSRP-LGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS 509 (515)
Q Consensus 432 ~~~~~~~~-~~~~~v~~~~~~~~~~~l~-s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~ 509 (515)
........ .|...+..++++|++++|+ +|+.|+.|++++-..............+...|.+++|+|++.+++++ ++.
T Consensus 256 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~-~~~ 334 (402)
T 2aq5_A 256 EEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNK-CEI 334 (402)
T ss_dssp SSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGG-TEE
T ss_pred cCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceec-cee
Confidence 55333333 5778899999999999986 56689999993322111000011112256899999999999988754 346
Q ss_pred EEEEe
Q 010206 510 LYMYY 514 (515)
Q Consensus 510 ~~i~~ 514 (515)
+.+|.
T Consensus 335 ~~~~~ 339 (402)
T 2aq5_A 335 ARFYK 339 (402)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77775
No 111
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.8e-30 Score=242.84 Aligned_cols=284 Identities=10% Similarity=0.112 Sum_probs=208.6
Q ss_pred eeeecccCCCcccccccccccceeEEEEEeecC-CCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCC
Q 010206 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSA-NSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (515)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (515)
....+.+|. +.|++++|+|.. ++.+|++++.|+.|++||+.+......
T Consensus 31 ~~~~~~~h~------------~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~------------------- 79 (368)
T 3mmy_A 31 DIEVTSSPD------------DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP------------------- 79 (368)
T ss_dssp CEECSSCCS------------SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE-------------------
T ss_pred eeEeccCCC------------CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE-------------------
Confidence 345577887 889999996542 157999999999999999986221100
Q ss_pred CCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEE
Q 010206 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 250 (515)
Q Consensus 171 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 250 (515)
..+.+|...|.+++|+|++++|+
T Consensus 80 ---------------------------------------------------------~~~~~h~~~v~~~~~~~~~~~l~ 102 (368)
T 3mmy_A 80 ---------------------------------------------------------KAQQMHTGPVLDVCWSDDGSKVF 102 (368)
T ss_dssp ---------------------------------------------------------EEEEECSSCEEEEEECTTSSEEE
T ss_pred ---------------------------------------------------------EEeccccCCEEEEEECcCCCEEE
Confidence 01357889999999999999999
Q ss_pred Ee-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEE--ecCCCcEEEEEecCCeEEEEecCcccccccccceee
Q 010206 251 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF--HPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 327 (515)
Q Consensus 251 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~--~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 327 (515)
++ .|+.|++||+++.+.. .+..|...|.+++| +|++ .+|++++.|+.|++||+++++.. ..+.
T Consensus 103 s~~~dg~v~iwd~~~~~~~---------~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~----~~~~ 168 (368)
T 3mmy_A 103 TASCDKTAKMWDLSSNQAI---------QIAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPM----MVLQ 168 (368)
T ss_dssp EEETTSEEEEEETTTTEEE---------EEEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCS----EEEE
T ss_pred EEcCCCcEEEEEcCCCCce---------eeccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEE----EEEe
Confidence 98 8999999999876533 34568999999999 8888 89999999999999999987643 2222
Q ss_pred eccCCCccccccccccceeEEEEccCCCEEEEE-cCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEE
Q 010206 328 EQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC 406 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 406 (515)
.+ ..+.++.+.+ ..++++ .++.+.+|++................ .+..++
T Consensus 169 ~~-------------~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 219 (368)
T 3mmy_A 169 LP-------------ERCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKH--------------QHRCVA 219 (368)
T ss_dssp CS-------------SCEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSS--------------CEEEEE
T ss_pred cC-------------CCceEEEecC--CeeEEEeCCCcEEEEEeccccchhhhccccccC--------------CCceEE
Confidence 21 3466666664 355555 45999999998532222222111110 122555
Q ss_pred EcCCCCE----EEEecCCCcEEEEecCCCC--cceeeeccCCC------------ceeeEEECCCCCeeEeecCCCeEEE
Q 010206 407 LSGDGGR----VATGSYSNLFRVFGCSEGS--AESTTLEASKN------------PMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 407 ~s~~~~~----l~s~s~dg~i~iw~~~~~~--~~~~~~~~~~~------------~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+.++... +++++.||.|++|++.... .....+..|.. ++.+++++|++++|++++.||.|++
T Consensus 220 ~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~i 299 (368)
T 3mmy_A 220 IFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSF 299 (368)
T ss_dssp EEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEE
T ss_pred EcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEE
Confidence 5555544 9999999999999998764 23366777765 7999999999999999999999999
Q ss_pred ecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCc
Q 010206 469 VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS 509 (515)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~ 509 (515)
++-.. .+.......|...|.+++|+|++++|++++.++
T Consensus 300 wd~~~---~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~ 337 (368)
T 3mmy_A 300 WDKDA---RTKLKTSEQLDQPISACCFNHNGNIFAYASSYD 337 (368)
T ss_dssp EETTT---TEEEEECCCCSSCEEEEEECTTSSCEEEEECCC
T ss_pred EECCC---CcEEEEecCCCCCceEEEECCCCCeEEEEeccc
Confidence 43222 122223446789999999999999999988653
No 112
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=4.5e-30 Score=246.27 Aligned_cols=264 Identities=15% Similarity=0.205 Sum_probs=201.0
Q ss_pred ccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcc
Q 010206 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (515)
Q Consensus 107 ~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l 186 (515)
..+.|.+.|++++|+|. ++.+|++++.||.|++|++........ +.+.
T Consensus 123 ~~~~h~~~v~~l~~~p~-~~~~lat~~~dg~V~vwd~~~~~~~~~-----------------------------~~~~-- 170 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQ-NACVIATKTPSSDVLVFDYTKHPSKPE-----------------------------PSGE-- 170 (430)
T ss_dssp EEEEESSCCSEEEEETT-EEEEEEEECSSSCEEEEEGGGSCSSCC-----------------------------TTCC--
T ss_pred EEEcCCCcEEEEEECCC-CCcEEEEECCCCcEEEEECCCcccccC-----------------------------cccc--
Confidence 33445589999999763 246899999999999999976421000 0000
Q ss_pred ccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCC-EEEEe-CCCcEEEEeCCC
Q 010206 187 ERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEI 264 (515)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~ 264 (515)
...... +.+|...|.+++|+|++. +|+++ .||.|++||+..
T Consensus 171 ------------------------------------~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~ 213 (430)
T 2xyi_A 171 ------------------------------------CQPDLR-LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINA 213 (430)
T ss_dssp ------------------------------------CCCSEE-EECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTS
T ss_pred ------------------------------------CCCcEE-ecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCC
Confidence 000111 357889999999999988 89988 899999999987
Q ss_pred CCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccc
Q 010206 265 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 344 (515)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (515)
......... ....+.+|...|.+++|+|++..+|++++.|+.|++||++++.... . ...+..|...
T Consensus 214 ~~~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~-~------------~~~~~~~~~~ 279 (430)
T 2xyi_A 214 TPKEHRVID-AKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK-P------------SHTVDAHTAE 279 (430)
T ss_dssp CCBGGGEEE-CSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSS-C------------SEEEECCSSC
T ss_pred CCCCCceec-cceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCc-c------------eeEeecCCCC
Confidence 443222111 0124567999999999999555899999999999999999763110 0 1123457789
Q ss_pred eeEEEEccCCC-EEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCC-EEEEecCCC
Q 010206 345 ISDIKFARNGR-HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSN 421 (515)
Q Consensus 345 i~~~~~s~~~~-~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~s~dg 421 (515)
|++++|+|+++ ++++|+. |.|++||++....++..+..|... |++++|+|+++ +|++++.||
T Consensus 280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~---------------v~~i~~sp~~~~~l~s~~~d~ 344 (430)
T 2xyi_A 280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE---------------IFQVQWSPHNETILASSGTDR 344 (430)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSC---------------EEEEEECSSCTTEEEEEETTS
T ss_pred eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCC---------------EEEEEECCCCCCEEEEEeCCC
Confidence 99999999887 5777765 999999999756778888877654 56999999995 699999999
Q ss_pred cEEEEecCCCC-------------cceeeeccCCCceeeEEECCCCC-eeEeecCCCeEEE
Q 010206 422 LFRVFGCSEGS-------------AESTTLEASKNPMRRQVQTPSRP-SRPLGSLSGVVRR 468 (515)
Q Consensus 422 ~i~iw~~~~~~-------------~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v~l 468 (515)
.|++||+.... .+...+.+|...++.++|+|+++ ++++++.|+.|++
T Consensus 345 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~i 405 (430)
T 2xyi_A 345 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQV 405 (430)
T ss_dssp CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEE
T ss_pred cEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEE
Confidence 99999998732 34466778999999999999999 8999999999999
No 113
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.98 E-value=1.2e-30 Score=250.24 Aligned_cols=269 Identities=17% Similarity=0.254 Sum_probs=199.9
Q ss_pred cccccccceEEEEECCC-CCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccc
Q 010206 30 EEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~-g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (515)
....|.+.|++++|+|+ +.+||+|+.+|.|+||++........ ..........+.+|.
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-------------~~~~~~~~~~~~~h~-------- 181 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-------------PSGECQPDLRLRGHQ-------- 181 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-------------TTCCCCCSEEEECCS--------
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-------------ccccCCCcEEecCCC--------
Confidence 35689999999999997 78999999999999999976321100 001123445567787
Q ss_pred ccccceeEEEEEeecCCCc-EEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccc
Q 010206 109 LEIEEKINKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (515)
Q Consensus 109 ~~~~~~v~~l~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~ 187 (515)
..|.+++|+| ++. +|++++.||+|++|++..+......
T Consensus 182 ----~~v~~l~~~~--~~~~~l~s~~~dg~i~vwd~~~~~~~~~~----------------------------------- 220 (430)
T 2xyi_A 182 ----KEGYGLSWNP--NLNGYLLSASDDHTICLWDINATPKEHRV----------------------------------- 220 (430)
T ss_dssp ----SCCCCEEECT--TSTTEEEEECTTSCEEEEETTSCCBGGGE-----------------------------------
T ss_pred ----CCeEEEEeCC--CCCCeEEEEeCCCeEEEEeCCCCCCCCce-----------------------------------
Confidence 7899999965 445 8999999999999999874210000
Q ss_pred cccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC-CCCEEEEe-CCCcEEEEeCCCC
Q 010206 188 RNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEIS 265 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~ 265 (515)
+ ..... ..+|...|.+++|+| ++.+|+++ .|+.|++||+++.
T Consensus 221 --------------------------~---------~~~~~-~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~ 264 (430)
T 2xyi_A 221 --------------------------I---------DAKNI-FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNN 264 (430)
T ss_dssp --------------------------E---------ECSEE-ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCS
T ss_pred --------------------------e---------cccee-ecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence 0 00011 357889999999999 67888888 8999999999976
Q ss_pred CcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccce
Q 010206 266 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 345 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 345 (515)
.....+ ..+..|...|++++|+|++..+|++|+.||.|++||+++.... . ..+..|...|
T Consensus 265 ~~~~~~-----~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~---~------------~~~~~h~~~v 324 (430)
T 2xyi_A 265 NTSKPS-----HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK---L------------HSFESHKDEI 324 (430)
T ss_dssp CSSSCS-----EEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC---S------------EEEECCSSCE
T ss_pred CCCcce-----eEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC---e------------EEeecCCCCE
Confidence 421111 1446789999999999998558999999999999999874321 1 1245577899
Q ss_pred eEEEEccCCC-EEEEEc-CCeEEEEEeeCCC-------------CCeeeEeeeccccccccccccCCCccceeeEEEcCC
Q 010206 346 SDIKFARNGR-HILSRD-YMTLKLWDINMDS-------------GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 410 (515)
Q Consensus 346 ~~~~~s~~~~-~l~s~~-~~~i~iwd~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 410 (515)
.+++|+|+++ +|++++ ++.|++||+...+ ..+..+.+|... |.+++|+|+
T Consensus 325 ~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~---------------v~~~~~~p~ 389 (430)
T 2xyi_A 325 FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK---------------ISDFSWNPN 389 (430)
T ss_dssp EEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSC---------------EEEEEECSS
T ss_pred EEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCC---------------ceEEEECCC
Confidence 9999999985 577765 5999999998522 233333344332 569999999
Q ss_pred CC-EEEEecCCCcEEEEecCCC
Q 010206 411 GG-RVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 411 ~~-~l~s~s~dg~i~iw~~~~~ 431 (515)
++ +|++++.||.|++|++...
T Consensus 390 ~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 390 EPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp STTEEEEEETTSEEEEEEECHH
T ss_pred CCCEEEEEECCCCEEEeEcccc
Confidence 99 8999999999999999753
No 114
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=1.1e-29 Score=244.20 Aligned_cols=269 Identities=17% Similarity=0.249 Sum_probs=212.7
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|.++.| ++.++++|+.||+|++||+.+++....
T Consensus 134 ~~v~~~~~----d~~~l~~g~~dg~i~iwd~~~~~~~~~----------------------------------------- 168 (435)
T 1p22_A 134 KGVYCLQY----DDQKIVSGLRDNTIKIWDKNTLECKRI----------------------------------------- 168 (435)
T ss_dssp CCEEEEEC----CSSEEEEEESSSCEEEEESSSCCEEEE-----------------------------------------
T ss_pred CcEEEEEE----CCCEEEEEeCCCeEEEEeCCCCeEEEE-----------------------------------------
Confidence 67888887 467999999999999999887653221
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
+.+|...|.+++| +++.|++| .||.|++||+++++...
T Consensus 169 -------------------------------------~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~-- 207 (435)
T 1p22_A 169 -------------------------------------LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLN-- 207 (435)
T ss_dssp -------------------------------------ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEE--
T ss_pred -------------------------------------EcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEE--
Confidence 3568889999998 78899998 89999999999776442
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
.+.+|...|.+++|++ ..+++|+.||.|++||++++..... ...+.+|...|.+++|
T Consensus 208 ------~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~-------------~~~~~~~~~~v~~~~~- 264 (435)
T 1p22_A 208 ------TLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITL-------------RRVLVGHRAAVNVVDF- 264 (435)
T ss_dssp ------EECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEE-------------EEEECCCSSCEEEEEE-
T ss_pred ------EEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCcee-------------eeEecCCCCcEEEEEe-
Confidence 5567999999999974 5899999999999999987653210 1124667789999999
Q ss_pred cCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCC
Q 010206 352 RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 352 ~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~ 430 (515)
+++++++|+. +.|++||+.+ ++.+..+.+|... +.+++| ++++|++|+.||.|++||+++
T Consensus 265 -~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~---------------v~~~~~--~~~~l~~g~~dg~i~iwd~~~ 325 (435)
T 1p22_A 265 -DDKYIVSASGDRTIKVWNTST-CEFVRTLNGHKRG---------------IACLQY--RDRLVVSGSSDNTIRLWDIEC 325 (435)
T ss_dssp -ETTEEEEEETTSEEEEEETTT-CCEEEEEECCSSC---------------EEEEEE--ETTEEEEEETTSCEEEEETTT
T ss_pred -CCCEEEEEeCCCeEEEEECCc-CcEEEEEcCCCCc---------------EEEEEe--CCCEEEEEeCCCeEEEEECCC
Confidence 6789999865 9999999996 7888888877654 447777 578999999999999999998
Q ss_pred CCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCC--C-CC---ccccCCccccccCCeeEEEEcCCCCEEEE
Q 010206 431 GSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGA--D-NS---ALDANGNAFDFSMKLLHLAWHPSENSIAC 504 (515)
Q Consensus 431 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~--~-~~---~~~~~~~~~~~~~~i~~~~~s~~~~~la~ 504 (515)
+ .....+.+|..++.++++ ++.++++|+.||.|++++-. . .. ..........|...|.+++| ++++|++
T Consensus 326 ~-~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s 400 (435)
T 1p22_A 326 G-ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVS 400 (435)
T ss_dssp C-CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEE
T ss_pred C-CEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEE
Confidence 7 455789999999999999 78899999999999993211 1 10 00011223468899999999 7888998
Q ss_pred EcCC-cEEEEe
Q 010206 505 AASN-SLYMYY 514 (515)
Q Consensus 505 ~~~~-~~~i~~ 514 (515)
++.| .+.+|+
T Consensus 401 ~s~Dg~i~iwd 411 (435)
T 1p22_A 401 SSHDDTILIWD 411 (435)
T ss_dssp CCSSSEEEEEC
T ss_pred EeCCCEEEEEE
Confidence 8855 488886
No 115
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.6e-30 Score=248.12 Aligned_cols=318 Identities=11% Similarity=0.145 Sum_probs=215.3
Q ss_pred ccccchhhhh-cc-cccccccccccceEEEEECCCCCeEEeecCCCeEEEEEcc---cCcccCccccCcccccccccCCc
Q 010206 14 PLEWKFSQVF-GE-RTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERT---DTRDNGGQRRDLEMMDYSMSRHP 88 (515)
Q Consensus 14 ~~~w~~~~~~-~~-~~~~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~---~~~~~~~~~~~~~~~~~~~~~~~ 88 (515)
-..|++...- +. .......+|..+|++++|+|++++|++|+.||.|++||+. +++.. ..+..
T Consensus 88 v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~----~~~~~--------- 154 (437)
T 3gre_A 88 IKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEV----KFLNC--------- 154 (437)
T ss_dssp EEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEE----EEEEE---------
T ss_pred EEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCcee----ecccc---------
Confidence 3458776421 11 1112234799999999999999999999999999999985 33211 00000
Q ss_pred cceeeee--cccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCC
Q 010206 89 EFRYKTE--FQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGP 166 (515)
Q Consensus 89 ~~~~~~~--~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 166 (515)
..... +.. ......+.++.+...+++.+|++++.|+.|++||+++++......
T Consensus 155 --~~i~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------------- 209 (437)
T 3gre_A 155 --ECIRKINLKN----------FGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIE------------- 209 (437)
T ss_dssp --EEEEEEEGGG----------GSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEE-------------
T ss_pred --ceeEEEEccC----------cccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEc-------------
Confidence 00011 111 002267889998777888999999999999999998865433211
Q ss_pred ccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCC
Q 010206 167 IFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG 246 (515)
Q Consensus 167 v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 246 (515)
...|...|.+++|+|++
T Consensus 210 ---------------------------------------------------------------~~~h~~~v~~~~~s~~~ 226 (437)
T 3gre_A 210 ---------------------------------------------------------------NSPRHGAVSSICIDEEC 226 (437)
T ss_dssp ---------------------------------------------------------------CCGGGCCEEEEEECTTS
T ss_pred ---------------------------------------------------------------cCCCCCceEEEEECCCC
Confidence 01267899999999999
Q ss_pred CEEEEe-CCCcEEEEeCCCCCcccceecccCcccc-ccCCceEEEEEec----CCCcEEEEEecCCeEEEEecCcccccc
Q 010206 247 ETFISA-DDLRINLWNLEISNQSFNIVDVKPANME-DLTEVITSAEFHP----THCNMLAYSSSKGSIRLIDMRQSALCD 320 (515)
Q Consensus 247 ~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~p----~~~~~l~~~~~dg~i~~wd~~~~~~~~ 320 (515)
++|++| .|+.|++||+++.+... .+. .|...|.+++|+| ++ .+|++|+.||.|++||+++++..
T Consensus 227 ~~l~s~~~dg~i~iwd~~~~~~~~--------~~~~~~~~~v~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~- 296 (437)
T 3gre_A 227 CVLILGTTRGIIDIWDIRFNVLIR--------SWSFGDHAPITHVEVCQFYGKNS-VIVVGGSSKTFLTIWNFVKGHCQ- 296 (437)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEE--------EEBCTTCEEEEEEEECTTTCTTE-EEEEEESTTEEEEEEETTTTEEE-
T ss_pred CEEEEEcCCCeEEEEEcCCccEEE--------EEecCCCCceEEEEeccccCCCc-cEEEEEcCCCcEEEEEcCCCcEE-
Confidence 999998 89999999998755432 222 5677899996665 55 79999999999999999987643
Q ss_pred cccceeeeccCCCc------------cccccc--cccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecc
Q 010206 321 THSKLFEEQEAPGT------------RSFFTE--IIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEH 385 (515)
Q Consensus 321 ~~~~~~~~~~~~~~------------~~~~~~--~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~ 385 (515)
..+..+..... ...+.+ |...|.+++|+ ++++|++|+. +.|++||+.+ ++....+.+|..
T Consensus 297 ---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~ 371 (437)
T 3gre_A 297 ---YAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNE-LSSSKAVISPSR 371 (437)
T ss_dssp ---EEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTC-GGGCEEEECC--
T ss_pred ---EEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCC-cccceEEecccc
Confidence 22222211100 011333 88899999999 7889999874 9999999996 778888877653
Q ss_pred ccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCC--CCeeEeecCC
Q 010206 386 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS--RPSRPLGSLS 463 (515)
Q Consensus 386 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~d 463 (515)
... ......++++..+++.. |+.... ........|...|+++++.++ +.+|++|+.|
T Consensus 372 ~~~------------~~~~~~~~~~~~~~~~~--------~~~~~~-~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~d 430 (437)
T 3gre_A 372 FSD------------VFIPTQVTANLTMLLRK--------MKRTST-HSVDDSLYHHDIINSISTCEVDETPLLVACDNS 430 (437)
T ss_dssp CCC------------EEEEEEEETTEEEEEEE--------CC--------------CCCEEEEEEEESSSSEEEEEEETT
T ss_pred cCc------------eEEEEEeecceEEEEEe--------cccccc-cccCcccccccceeeEeeeccCCceEEEEEcCC
Confidence 321 12255666666555544 333332 233556779999999999988 7899999999
Q ss_pred CeEEE
Q 010206 464 GVVRR 468 (515)
Q Consensus 464 ~~v~l 468 (515)
|.|++
T Consensus 431 G~I~i 435 (437)
T 3gre_A 431 GLIGI 435 (437)
T ss_dssp SCEEE
T ss_pred ceEEE
Confidence 99998
No 116
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.1e-29 Score=240.08 Aligned_cols=238 Identities=10% Similarity=0.086 Sum_probs=179.0
Q ss_pred ccCcCCeEEEEecCCCCEE-EEe-CCCcEEEEeCC--CCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCC
Q 010206 231 HAHDYHINSISNNSDGETF-ISA-DDLRINLWNLE--ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG 306 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l-~s~-~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg 306 (515)
.+|...|.+++|+|++++| +++ .|+.|++||+. +++....+ ....|...|.+++|+|++ .+|++|+.+|
T Consensus 99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~------~~~~~~~~v~~~~~sp~~-~~l~~~~~~g 171 (450)
T 2vdu_B 99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLR------KRFCFSKRPNAISIAEDD-TTVIIADKFG 171 (450)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEE------EEEECSSCEEEEEECTTS-SEEEEEETTS
T ss_pred CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeee------ecccCCCCceEEEEcCCC-CEEEEEeCCC
Confidence 4677889999999999996 777 79999999998 55433211 112567889999999998 8999999999
Q ss_pred eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccC---CCEEEEEcC-CeEEEEEeeCCCCCeee-Ee
Q 010206 307 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN---GRHILSRDY-MTLKLWDINMDSGPVAT-FQ 381 (515)
Q Consensus 307 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~s~~~-~~i~iwd~~~~~~~~~~-~~ 381 (515)
.+++|++.++...... ...+.+|...|.+++|+|+ +++|++++. +.|++||+.+ ++.+.. +.
T Consensus 172 ~v~~~~~~~~~~~~~~------------~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~ 238 (450)
T 2vdu_B 172 DVYSIDINSIPEEKFT------------QEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ-CFIVDKWLF 238 (450)
T ss_dssp EEEEEETTSCCCSSCC------------CCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC-TTCEEEECC
T ss_pred cEEEEecCCccccccc------------ceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC-Cceeeeeec
Confidence 9999999877543210 1135667789999999999 999999875 9999999986 666666 44
Q ss_pred eeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeec----------------------
Q 010206 382 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE---------------------- 439 (515)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~---------------------- 439 (515)
+|... |.+++|+ ++++|++++.|+.|++||+.++.. ...+.
T Consensus 239 ~h~~~---------------v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (450)
T 2vdu_B 239 GHKHF---------------VSSICCG-KDYLLLSAGGDDKIFAWDWKTGKN-LSTFDYNSLIKPYLNDQHLAPPRFQNE 301 (450)
T ss_dssp CCSSC---------------EEEEEEC-STTEEEEEESSSEEEEEETTTCCE-EEEEECHHHHGGGCCTTSBC-------
T ss_pred CCCCc---------------eEEEEEC-CCCEEEEEeCCCeEEEEECCCCcE-eeeecchhhhhhhhhhccccccccccc
Confidence 56544 5699999 999999999999999999998743 34443
Q ss_pred ---cCCCceeeEEECCCCCeeEeec-CCCeEEEecC--CCCCccccCCccccccCCeeEEEEcCCCCEEEEEc
Q 010206 440 ---ASKNPMRRQVQTPSRPSRPLGS-LSGVVRRVKG--ADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 506 (515)
Q Consensus 440 ---~~~~~v~~~~~~~~~~~l~s~~-~d~~v~l~~~--~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~ 506 (515)
.....+..++++|+++++++++ .|+.|++++- ..............+ ..|.+++|+|++.++++++
T Consensus 302 ~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~ 373 (450)
T 2vdu_B 302 NNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDN 373 (450)
T ss_dssp ---CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECC
T ss_pred ccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEec
Confidence 2245688999999999999998 8999999433 111100111112223 7899999999654444444
No 117
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=3.2e-29 Score=242.33 Aligned_cols=275 Identities=14% Similarity=0.159 Sum_probs=191.8
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
+.+.|++++|+ +++.+|++|+.||.|++||+.+++......
T Consensus 27 ~~~~V~~v~~s--~~g~~la~g~~dg~v~iw~~~~~~~~~~~~------------------------------------- 67 (447)
T 3dw8_B 27 EADIISTVEFN--HSGELLATGDKGGRVVIFQQEQENKIQSHS------------------------------------- 67 (447)
T ss_dssp GGGSEEEEEEC--SSSSEEEEEETTSEEEEEEECC-----CCC-------------------------------------
T ss_pred ccCcEEEEEEC--CCCCEEEEEcCCCeEEEEEecCCCCCCccc-------------------------------------
Confidence 34889999995 567899999999999999998765211000
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCc------------CCeEEEEecCCC--CEEEEe-CCC
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHD------------YHINSISNNSDG--ETFISA-DDL 255 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~~~~~--~~l~s~-~d~ 255 (515)
.+..+ .... +.+|. ..|.+++|+|++ ..|+++ .|+
T Consensus 68 -------------~~~~~----------------~~~~-~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~ 117 (447)
T 3dw8_B 68 -------------RGEYN----------------VYST-FQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDK 117 (447)
T ss_dssp -------------CCCEE----------------EEEE-EECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSS
T ss_pred -------------cccee----------------Eecc-cccccccccccccccccCceEEEEEcCCCCcceEEEeCCCC
Confidence 00000 0011 24555 789999999998 788887 899
Q ss_pred cEEEEeCCCCCcccceeccc------------------------------C--ccccccCCceEEEEEecCCCcEEEEEe
Q 010206 256 RINLWNLEISNQSFNIVDVK------------------------------P--ANMEDLTEVITSAEFHPTHCNMLAYSS 303 (515)
Q Consensus 256 ~i~iwd~~~~~~~~~~~~~~------------------------------~--~~~~~~~~~i~~i~~~p~~~~~l~~~~ 303 (515)
+|++||+.+........... + ....+|...|.+++|+|++ .+|++|
T Consensus 118 ~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~- 195 (447)
T 3dw8_B 118 TIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDY-ETYLSA- 195 (447)
T ss_dssp CEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTS-SEEEEE-
T ss_pred eEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCC-CEEEEe-
Confidence 99999997543210000000 0 0135799999999999998 899998
Q ss_pred cCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCC-CEEEEEcC-CeEEEEEeeCCCCC----e
Q 010206 304 SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILSRDY-MTLKLWDINMDSGP----V 377 (515)
Q Consensus 304 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~s~~~-~~i~iwd~~~~~~~----~ 377 (515)
.|+.|++||+++.... ...+... ...+.+|...|.+++|+|++ ++|++|+. +.|++||+++ ++. +
T Consensus 196 ~d~~i~iwd~~~~~~~---~~~~~~~-----~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~ 266 (447)
T 3dw8_B 196 DDLRINLWHLEITDRS---FNIVDIK-----PANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA-SALCDRHS 266 (447)
T ss_dssp CSSEEEEEETTEEEEE---EEEEECC-----CSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT-CSSSCTTC
T ss_pred CCCeEEEEECCCCCce---eeeeecc-----cccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC-Ccccccee
Confidence 8999999999854321 1111111 11256788999999999998 89999875 9999999986 554 5
Q ss_pred eeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCcee-----------
Q 010206 378 ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMR----------- 446 (515)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~----------- 446 (515)
..+..|........ .......|.+++|+|++++|++++. +.|++||+++.......+.+|...+.
T Consensus 267 ~~~~~~~~~~~~~~---~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 342 (447)
T 3dw8_B 267 KLFEEPEDPSNRSF---FSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 342 (447)
T ss_dssp EEECCC-----CCH---HHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred eEeccCCCcccccc---ccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccc
Confidence 66766653100000 0000012669999999999999999 99999999974456678888864322
Q ss_pred ----eEEECCCCCeeEeecCCCeEEEe
Q 010206 447 ----RQVQTPSRPSRPLGSLSGVVRRV 469 (515)
Q Consensus 447 ----~~~~~~~~~~l~s~~~d~~v~l~ 469 (515)
.++|+|++++|++|+.||.|+++
T Consensus 343 ~~~~~~~~s~~~~~l~s~s~dg~v~iw 369 (447)
T 3dw8_B 343 FDKFECCWNGSDSVVMTGSYNNFFRMF 369 (447)
T ss_dssp GCCCCEEECTTSSEEEEECSTTEEEEE
T ss_pred ccceEEEECCCCCEEEEeccCCEEEEE
Confidence 38999999999999999999993
No 118
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.4e-29 Score=255.05 Aligned_cols=242 Identities=16% Similarity=0.171 Sum_probs=194.6
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
+.|++++|+ +++++|++++.||+|++||+.++......
T Consensus 10 ~~V~~l~~s--~dg~~latg~~dg~I~vwd~~~~~~~~~~---------------------------------------- 47 (753)
T 3jro_A 10 ELIHDAVLD--YYGKRLATCSSDKTIKIFEVEGETHKLID---------------------------------------- 47 (753)
T ss_dssp CCEEEECCC--SSSCCEEEEETTTEEEEEEEETTEEEEEE----------------------------------------
T ss_pred ceeEEEEEC--CCCCeEEEEECCCcEEEEecCCCCCccce----------------------------------------
Confidence 899999995 56779999999999999998754321110
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC--CCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
. +.+|...|.+++|+|+ +++|++| .||.|++||+.+++...
T Consensus 48 -----------------------------------~-l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~ 91 (753)
T 3jro_A 48 -----------------------------------T-LTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQ 91 (753)
T ss_dssp -----------------------------------E-ECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEE
T ss_pred -----------------------------------e-ccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccc
Confidence 1 3578899999999988 9999998 89999999998764211
Q ss_pred ceecccCccccccCCceEEEEEecC--CCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 347 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (515)
. ..+.+|...|.+++|+|+ + ..+++|+.||.|++||++++..... ..+.+|...|.+
T Consensus 92 ~------~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~~~--------------~~~~~~~~~v~~ 150 (753)
T 3jro_A 92 I------AVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSP--------------IIIDAHAIGVNS 150 (753)
T ss_dssp E------EEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCCCC--------------EEEECCSSCEEE
T ss_pred c------ccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCcce--------------eEeecCCCceEE
Confidence 1 155679999999999999 7 8999999999999999988643211 124567789999
Q ss_pred EEEcc-------------CCCEEEEEcC-CeEEEEEeeCCC---CCeeeEeeeccccccccccccCCCccceeeEEEcCC
Q 010206 348 IKFAR-------------NGRHILSRDY-MTLKLWDINMDS---GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 410 (515)
Q Consensus 348 ~~~s~-------------~~~~l~s~~~-~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 410 (515)
++|+| ++.++++|+. |.|++||++... .+...+.+|... |++++|+|+
T Consensus 151 l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~---------------V~~l~~sp~ 215 (753)
T 3jro_A 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW---------------VRDVAWSPT 215 (753)
T ss_dssp EEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC---------------EEEEEECCC
T ss_pred EEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCc---------------EEEEEeccC
Confidence 99999 5889998865 999999998632 233445555543 569999999
Q ss_pred ---CCEEEEecCCCcEEEEecCCCCc----ceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 411 ---GGRVATGSYSNLFRVFGCSEGSA----ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 411 ---~~~l~s~s~dg~i~iw~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+++|++++.||.|++||+.++.. .......|...+.+++|+|+++++++++.||.|++
T Consensus 216 ~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~v 280 (753)
T 3jro_A 216 VLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 280 (753)
T ss_dssp CSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEEC
T ss_pred CCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEE
Confidence 89999999999999999987632 22344568899999999999999999999999999
No 119
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=3.8e-28 Score=233.69 Aligned_cols=278 Identities=9% Similarity=0.127 Sum_probs=205.2
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..+.+++|+| ++.++++++.|+.|++||+.+++........
T Consensus 123 ~~~~~~~~s~--~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~------------------------------------- 163 (433)
T 3bws_A 123 FQPKSVRFID--NTRLAIPLLEDEGMDVLDINSGQTVRLSPPE------------------------------------- 163 (433)
T ss_dssp SCBCCCEESS--SSEEEEEBTTSSSEEEEETTTCCEEEECCCH-------------------------------------
T ss_pred CCceEEEEeC--CCeEEEEeCCCCeEEEEECCCCeEeeecCcc-------------------------------------
Confidence 4467899965 5667788888999999999987654321100
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
...+|...|.+++|++++++++++ .|+.|++||+++.+...
T Consensus 164 ------------------------------------~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~-- 205 (433)
T 3bws_A 164 ------------------------------------KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA-- 205 (433)
T ss_dssp ------------------------------------HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE--
T ss_pred ------------------------------------cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE--
Confidence 024677889999999999999998 89999999998765442
Q ss_pred ecccCccccccCCceEEEEEecCCCcEE-EEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEE
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNML-AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 350 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (515)
.+..|...+.+++|+|++ ..+ ++++.|+.|++||+++++... .+. +...+.+++|
T Consensus 206 ------~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~i~~~d~~~~~~~~----~~~-------------~~~~~~~~~~ 261 (433)
T 3bws_A 206 ------TVDLTGKWSKILLYDPIR-DLVYCSNWISEDISVIDRKTKLEIR----KTD-------------KIGLPRGLLL 261 (433)
T ss_dssp ------EEECSSSSEEEEEEETTT-TEEEEEETTTTEEEEEETTTTEEEE----ECC-------------CCSEEEEEEE
T ss_pred ------EEcCCCCCeeEEEEcCCC-CEEEEEecCCCcEEEEECCCCcEEE----Eec-------------CCCCceEEEE
Confidence 345678899999999998 555 566689999999998876422 111 1145899999
Q ss_pred ccCCCEEEEEc---------CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEE-EEecCC
Q 010206 351 ARNGRHILSRD---------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV-ATGSYS 420 (515)
Q Consensus 351 s~~~~~l~s~~---------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~s~d 420 (515)
+|+++++++++ ++.|++||+.+ ++.+..+. +... +..++|+|+++.+ ++++.|
T Consensus 262 ~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~-~~~~~~~~-~~~~---------------~~~~~~~~~g~~l~~~~~~~ 324 (433)
T 3bws_A 262 SKDGKELYIAQFSASNQESGGGRLGIYSMDK-EKLIDTIG-PPGN---------------KRHIVSGNTENKIYVSDMCC 324 (433)
T ss_dssp CTTSSEEEEEEEESCTTCSCCEEEEEEETTT-TEEEEEEE-EEEC---------------EEEEEECSSTTEEEEEETTT
T ss_pred cCCCCEEEEEECCCCccccCCCeEEEEECCC-CcEEeecc-CCCC---------------cceEEECCCCCEEEEEecCC
Confidence 99999998865 47999999985 55554442 2222 3489999999755 677899
Q ss_pred CcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecC---------------CCeEEEecCCCCCccccCCcccc
Q 010206 421 NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL---------------SGVVRRVKGADNSALDANGNAFD 485 (515)
Q Consensus 421 g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---------------d~~v~l~~~~~~~~~~~~~~~~~ 485 (515)
+.|++||+.++ .....+. +...+..++++|+++++++++. ||.|++++..... .. ..+.
T Consensus 325 ~~v~v~d~~~~-~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~---~~-~~~~ 398 (433)
T 3bws_A 325 SKIEVYDLKEK-KVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT---VK-EFWE 398 (433)
T ss_dssp TEEEEEETTTT-EEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE---EE-EEEE
T ss_pred CEEEEEECCCC-cEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc---EE-EEec
Confidence 99999999976 3434444 6677889999999998888776 5689984332211 11 1122
Q ss_pred ccCCeeEEEEcCCCCEEEEEc--CCcEEEEe
Q 010206 486 FSMKLLHLAWHPSENSIACAA--SNSLYMYY 514 (515)
Q Consensus 486 ~~~~i~~~~~s~~~~~la~~~--~~~~~i~~ 514 (515)
....+.+++|+|++++|++++ ++.+.+|.
T Consensus 399 ~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~ 429 (433)
T 3bws_A 399 AGNQPTGLDVSPDNRYLVISDFLDHQIRVYR 429 (433)
T ss_dssp CSSSEEEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred CCCCCceEEEcCCCCEEEEEECCCCeEEEEE
Confidence 356789999999999998764 56788886
No 120
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1.3e-27 Score=226.61 Aligned_cols=280 Identities=13% Similarity=0.119 Sum_probs=205.1
Q ss_pred CCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEEEeecCCC
Q 010206 47 GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS 126 (515)
Q Consensus 47 g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~ 126 (515)
+.++++++.|+.|++||+.+++. ...+..| ..+.+++| ++++
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~-----------------------~~~~~~~-------------~~~~~~~~--s~dg 43 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKV-----------------------TATIPVG-------------SNPMGAVI--SPDG 43 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEE-----------------------EEEEECS-------------SSEEEEEE--CTTS
T ss_pred CEEEEEcCCCCEEEEEECCCCeE-----------------------EEEeecC-------------CCcceEEE--CCCC
Confidence 34688899999999999987653 2344555 34899999 4566
Q ss_pred cEE-EeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcc
Q 010206 127 ALY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (515)
Q Consensus 127 ~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 205 (515)
+++ ++++.|++|++||+.+++......... .+. .++|+|+|+.+ ++++..++
T Consensus 44 ~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~---------~v~-------~~~~spdg~~l-----------~~~~~~~~ 96 (391)
T 1l0q_A 44 TKVYVANAHSNDVSIIDTATNNVIATVPAGS---------SPQ-------GVAVSPDGKQV-----------YVTNMASS 96 (391)
T ss_dssp SEEEEEEGGGTEEEEEETTTTEEEEEEECSS---------SEE-------EEEECTTSSEE-----------EEEETTTT
T ss_pred CEEEEECCCCCeEEEEECCCCeEEEEEECCC---------Ccc-------ceEECCCCCEE-----------EEEECCCC
Confidence 666 566789999999999998776655432 222 78999999976 13455679
Q ss_pred cEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEE-EEe-CCCcEEEEeCCCCCcccceecccCccccccC
Q 010206 206 SLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF-ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT 283 (515)
Q Consensus 206 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 283 (515)
.|++|| +... +....+ .+...+.+++|+|+++.| +++ .++.|++||+.+++... .+.. .
T Consensus 97 ~v~v~d--~~~~------~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~--------~~~~-~ 157 (391)
T 1l0q_A 97 TLSVID--TTSN------TVAGTV--KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN--------TVSV-G 157 (391)
T ss_dssp EEEEEE--TTTT------EEEEEE--ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE--------EEEC-C
T ss_pred EEEEEE--CCCC------eEEEEE--eCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE--------EEec-C
Confidence 999999 3332 222221 234578999999999987 566 79999999998765432 2222 3
Q ss_pred CceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc--
Q 010206 284 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-- 361 (515)
Q Consensus 284 ~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-- 361 (515)
..+.+++|+|++..++++++.++.|++||+++++... .+ .+...+.+++|+|++++|++++
T Consensus 158 ~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~----~~-------------~~~~~~~~~~~~~~g~~l~~~~~~ 220 (391)
T 1l0q_A 158 RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID----TV-------------KVEAAPSGIAVNPEGTKAYVTNVD 220 (391)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE----EE-------------ECSSEEEEEEECTTSSEEEEEEEC
T ss_pred CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEE----EE-------------ecCCCccceEECCCCCEEEEEecC
Confidence 4579999999993344678889999999998876421 11 1235688999999999988864
Q ss_pred --CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEE-EEecCCCcEEEEecCCCCcceeee
Q 010206 362 --YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV-ATGSYSNLFRVFGCSEGSAESTTL 438 (515)
Q Consensus 362 --~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~s~dg~i~iw~~~~~~~~~~~~ 438 (515)
++.|++||+.+ ++.+..+..+.. +.+++|+|++++| ++++.|+.|++||+.++ .+...+
T Consensus 221 ~~~~~v~~~d~~~-~~~~~~~~~~~~----------------~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~-~~~~~~ 282 (391)
T 1l0q_A 221 KYFNTVSMIDTGT-NKITARIPVGPD----------------PAGIAVTPDGKKVYVALSFXNTVSVIDTATN-TITATM 282 (391)
T ss_dssp SSCCEEEEEETTT-TEEEEEEECCSS----------------EEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEE
T ss_pred cCCCcEEEEECCC-CeEEEEEecCCC----------------ccEEEEccCCCEEEEEcCCCCEEEEEECCCC-cEEEEE
Confidence 49999999986 666666655432 3479999999987 67789999999999987 455677
Q ss_pred ccCCCce
Q 010206 439 EASKNPM 445 (515)
Q Consensus 439 ~~~~~~v 445 (515)
..+..+.
T Consensus 283 ~~~~~~~ 289 (391)
T 1l0q_A 283 AVGKNPY 289 (391)
T ss_dssp ECSSSEE
T ss_pred ECCcCCC
Confidence 7666553
No 121
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=6.4e-27 Score=218.13 Aligned_cols=227 Identities=9% Similarity=0.067 Sum_probs=160.7
Q ss_pred eEEEEecCCCCEEEE-e-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecC
Q 010206 237 INSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 314 (515)
Q Consensus 237 v~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~ 314 (515)
+..+++.++++.++. + .|++|++||+.+++.... +. +...|.+++|+++. ++++ .++.|++||+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~--------~~-~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~ 127 (355)
T 3vu4_A 61 LSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSR--------IK-VDAPVKDLFLSREF---IVVS-YGDVISVFKFG 127 (355)
T ss_dssp CCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEE--------EE-CSSCEEEEEECSSE---EEEE-ETTEEEEEESS
T ss_pred eEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEE--------EE-CCCceEEEEEcCCE---EEEE-EcCEEEEEECC
Confidence 556777787777754 5 689999999987765432 22 56789999999864 3333 47899999998
Q ss_pred cc-cccccccceeeeccCCCccccccccccceeEEEEccCCCEEEE--EcC-CeEEEEEeeCCCC---------------
Q 010206 315 QS-ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS--RDY-MTLKLWDINMDSG--------------- 375 (515)
Q Consensus 315 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s--~~~-~~i~iwd~~~~~~--------------- 375 (515)
++ +.... +.. +...+++++ .+++. |+. |.|++||+.+ +.
T Consensus 128 ~~~~~~~~----~~~---------------~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~-~~~~~~~~~~~~~~~~~ 185 (355)
T 3vu4_A 128 NPWKRITD----DIR---------------FGGVCEFSN--GLLVYSNEFNLGQIHITKLQS-SGSATTQDQGVQQKAIL 185 (355)
T ss_dssp TTCCBSSC----CEE---------------EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------
T ss_pred CCceeeEE----ecc---------------CCceEEEEc--cEEEEeCCCcCcEEEEEECCC-CCccccccccccccccC
Confidence 87 43221 111 234456676 56665 444 9999999986 33
Q ss_pred C-eeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCc-EEEEecCCCCcceeeec-c-CCCceeeEEEC
Q 010206 376 P-VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL-FRVFGCSEGSAESTTLE-A-SKNPMRRQVQT 451 (515)
Q Consensus 376 ~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~-i~iw~~~~~~~~~~~~~-~-~~~~v~~~~~~ 451 (515)
+ +..+.+|... |.+++|+|+|++|++|+.|++ |++||++++. ....+. + |..+|.+++|+
T Consensus 186 p~~~~~~~h~~~---------------v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~-~~~~~~~g~h~~~v~~~~~s 249 (355)
T 3vu4_A 186 GKGVLIKAHTNP---------------IKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV-LVREFRRGLDRADVVDMKWS 249 (355)
T ss_dssp -CCEEECCCSSC---------------EEEEEECTTSSEEEEEETTCSEEEEEETTTCC-EEEEEECTTCCSCEEEEEEC
T ss_pred cccEEEEccCCc---------------eEEEEECCCCCEEEEEeCCCCEEEEEECCCCc-EEEEEEcCCCCCcEEEEEEC
Confidence 2 5666667654 569999999999999999998 9999999884 446776 5 99999999999
Q ss_pred CCCCeeEeecCCCeEEEecCCCCC--c-cccCC----c-------------cccccCCeeEEEEcCCCCEEEEEcCCc-E
Q 010206 452 PSRPSRPLGSLSGVVRRVKGADNS--A-LDANG----N-------------AFDFSMKLLHLAWHPSENSIACAASNS-L 510 (515)
Q Consensus 452 ~~~~~l~s~~~d~~v~l~~~~~~~--~-~~~~~----~-------------~~~~~~~i~~~~~s~~~~~la~~~~~~-~ 510 (515)
|++++|++++.|++|++++-.... . ..+.. . ..........++|+||+++|++++.++ +
T Consensus 250 ~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~ 329 (355)
T 3vu4_A 250 TDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMI 329 (355)
T ss_dssp TTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEE
T ss_pred CCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeE
Confidence 999999999999999993322111 0 00000 0 000122347799999999999998766 5
Q ss_pred EEEe
Q 010206 511 YMYY 514 (515)
Q Consensus 511 ~i~~ 514 (515)
.+|.
T Consensus 330 ~~~~ 333 (355)
T 3vu4_A 330 ETFK 333 (355)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5553
No 122
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.5e-28 Score=224.63 Aligned_cols=185 Identities=10% Similarity=0.035 Sum_probs=134.9
Q ss_pred ccCCceEEEEEec--CCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEE
Q 010206 281 DLTEVITSAEFHP--THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL 358 (515)
Q Consensus 281 ~~~~~i~~i~~~p--~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 358 (515)
+|...|.+++|+| ++ .+|++++.||.|++||+++++... ... ..|...+.+++|+|++++|+
T Consensus 123 ~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~----~~~-----------~~~~~~i~~~~~~pdg~~la 186 (343)
T 3lrv_A 123 DSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQYI----VHS-----------AKSDVEYSSGVLHKDSLLLA 186 (343)
T ss_dssp CCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEEE----EEC-----------CCSSCCCCEEEECTTSCEEE
T ss_pred CCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEEE----EEe-----------cCCCCceEEEEECCCCCEEE
Confidence 4668899999999 88 899999999999999999876421 111 12335799999999999999
Q ss_pred EEcC-CeEEEEEeeCCCCCe-eeEee-eccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcce
Q 010206 359 SRDY-MTLKLWDINMDSGPV-ATFQV-HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES 435 (515)
Q Consensus 359 s~~~-~~i~iwd~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~ 435 (515)
+|+. +.|++||+++ ++.+ ..+.. |... |.+++|+|++.+|++++. +.|++||++++...
T Consensus 187 sg~~dg~i~iwd~~~-~~~~~~~~~~~h~~~---------------v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~- 248 (343)
T 3lrv_A 187 LYSPDGILDVYNLSS-PDQASSRFPVDEEAK---------------IKEVKFADNGYWMVVECD-QTVVCFDLRKDVGT- 248 (343)
T ss_dssp EECTTSCEEEEESSC-TTSCCEECCCCTTSC---------------EEEEEECTTSSEEEEEES-SBEEEEETTSSTTC-
T ss_pred EEcCCCEEEEEECCC-CCCCccEEeccCCCC---------------EEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcc-
Confidence 9865 9999999997 5555 66766 6544 569999999999999994 59999999987433
Q ss_pred eeec---cCCCcee--eEEECCCCCeeEeecC-CCeEEEecC---CCCCccccCCccccccCCeeEEEEcC---CCCEEE
Q 010206 436 TTLE---ASKNPMR--RQVQTPSRPSRPLGSL-SGVVRRVKG---ADNSALDANGNAFDFSMKLLHLAWHP---SENSIA 503 (515)
Q Consensus 436 ~~~~---~~~~~v~--~~~~~~~~~~l~s~~~-d~~v~l~~~---~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~la 503 (515)
..+. .|..++. +++|+|++++|++++. |+.+++++- .+.+. ...+..++|+| +.+.|+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~ 318 (343)
T 3lrv_A 249 LAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWT----------KDEESALCLQSDTADFTDMD 318 (343)
T ss_dssp BSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEE----------EEEEEECCC----CCCCEEE
T ss_pred eeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceE----------ecCceeEecCccccccceeE
Confidence 3333 3445555 5999999999999988 999999321 11121 14566777877 777777
Q ss_pred EEcCCc
Q 010206 504 CAASNS 509 (515)
Q Consensus 504 ~~~~~~ 509 (515)
+++.++
T Consensus 319 ~~~~d~ 324 (343)
T 3lrv_A 319 VVCGDG 324 (343)
T ss_dssp EEEETT
T ss_pred EEecCC
Confidence 666444
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=3.4e-27 Score=227.02 Aligned_cols=280 Identities=9% Similarity=0.035 Sum_probs=210.0
Q ss_pred ccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccc
Q 010206 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (515)
.....+.+++|+|++.++++++.++.|++||+.+++..... ....+.+|.
T Consensus 120 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~------------------~~~~~~~~~------------ 169 (433)
T 3bws_A 120 KTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLS------------------PPEKYKKKL------------ 169 (433)
T ss_dssp ECSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEEC------------------CCHHHHTTC------------
T ss_pred cCCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeec------------------CcccccccC------------
Confidence 34456779999998888889989999999999877642000 001345666
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|.+++| ++++.++++++.|+.|++||+.+++....
T Consensus 170 ~~v~~~~~--~~~~~~~~s~~~d~~v~~~d~~~~~~~~~----------------------------------------- 206 (433)
T 3bws_A 170 GFVETISI--PEHNELWVSQMQANAVHVFDLKTLAYKAT----------------------------------------- 206 (433)
T ss_dssp CEEEEEEE--GGGTEEEEEEGGGTEEEEEETTTCCEEEE-----------------------------------------
T ss_pred CceeEEEE--cCCCEEEEEECCCCEEEEEECCCceEEEE-----------------------------------------
Confidence 78999999 55677999999999999999987653222
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEE-Ee-CCCcEEEEeCCCCCcccc
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI-SA-DDLRINLWNLEISNQSFN 270 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~-~d~~i~iwd~~~~~~~~~ 270 (515)
+..|...+.+++|+|+++.++ ++ .|+.|++||+++++...
T Consensus 207 -------------------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~- 248 (433)
T 3bws_A 207 -------------------------------------VDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIR- 248 (433)
T ss_dssp -------------------------------------EECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-
T ss_pred -------------------------------------EcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEE-
Confidence 134567789999999999885 45 69999999998765432
Q ss_pred eecccCccccccCCceEEEEEecCCCcEEEEEe--------cCCeEEEEecCcccccccccceeeeccCCCccccccccc
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--------SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 342 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~--------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (515)
.+. +...+.+++|+|++ ..+++++ .|+.|++||+++++.... ..|.
T Consensus 249 -------~~~-~~~~~~~~~~~~~g-~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~-----------------~~~~ 302 (433)
T 3bws_A 249 -------KTD-KIGLPRGLLLSKDG-KELYIAQFSASNQESGGGRLGIYSMDKEKLIDT-----------------IGPP 302 (433)
T ss_dssp -------ECC-CCSEEEEEEECTTS-SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE-----------------EEEE
T ss_pred -------Eec-CCCCceEEEEcCCC-CEEEEEECCCCccccCCCeEEEEECCCCcEEee-----------------ccCC
Confidence 222 24458999999998 7888777 488999999988764321 1233
Q ss_pred cceeEEEEccCCCEEEE-EcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecC-
Q 010206 343 ASISDIKFARNGRHILS-RDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY- 419 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s-~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~- 419 (515)
..+.+++|+|+++.++. ++. +.|++||+.+ ++.+..+. +... +.+++|+|+|++|++++.
T Consensus 303 ~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~-~~~~~~~~-~~~~---------------~~~~~~s~dg~~l~~~~~~ 365 (433)
T 3bws_A 303 GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE-KKVQKSIP-VFDK---------------PNTIALSPDGKYLYVSCRG 365 (433)
T ss_dssp ECEEEEEECSSTTEEEEEETTTTEEEEEETTT-TEEEEEEE-CSSS---------------EEEEEECTTSSEEEEEECC
T ss_pred CCcceEEECCCCCEEEEEecCCCEEEEEECCC-CcEEEEec-CCCC---------------CCeEEEcCCCCEEEEEecC
Confidence 57889999999986654 454 9999999985 66655554 2221 348999999999888775
Q ss_pred --------------CCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecC-CCeEEE
Q 010206 420 --------------SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL-SGVVRR 468 (515)
Q Consensus 420 --------------dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~v~l 468 (515)
||.|++||+.++ .....+.. ...+..++++|++++|++++. |+.|++
T Consensus 366 ~~~~~~~~~~~g~~dg~v~~~d~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v 427 (433)
T 3bws_A 366 PNHPTEGYLKKGLVLGKVYVIDTTTD-TVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRV 427 (433)
T ss_dssp CCCTTTCTTSCCSSCCEEEEEETTTT-EEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEE
T ss_pred CCccccccccccccceEEEEEECCCC-cEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEE
Confidence 579999999887 44455555 456889999999999987764 999998
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=2.9e-27 Score=209.69 Aligned_cols=185 Identities=11% Similarity=0.032 Sum_probs=135.4
Q ss_pred CCCCEEEEe---CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEec---CCCcEEEEEecCCeEEEEecCccc
Q 010206 244 SDGETFISA---DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP---THCNMLAYSSSKGSIRLIDMRQSA 317 (515)
Q Consensus 244 ~~~~~l~s~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p---~~~~~l~~~~~dg~i~~wd~~~~~ 317 (515)
++++++.++ .|+.|++|++....+... .+..|...++.++|+| ++ .+|++|+.|++|++||+++++
T Consensus 143 ~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~-------s~~~~~~~v~~l~fs~~~g~~-~~LaSgS~D~TIkIWDl~TGk 214 (356)
T 2w18_A 143 TKRRLVSSSGTLSDQQVEVMTFAEDGGGKE-------NQFLMPPEETILTFAEVQGMQ-EALLGTTIMNNIVIWNLKTGQ 214 (356)
T ss_dssp TTTEEEEEESSSTTCEEEEEEECTTSCEEE-------EEEECCCSSCEEEEEEEETST-TEEEEEETTSEEEEEETTTCC
T ss_pred CCCcEEEecccCCCCcEEEEEECCCCceee-------eeccCCCceeeEEeeccCCCC-ceEEEecCCCcEEEEECCCCc
Confidence 567777774 399999999955333321 4567888889999998 66 899999999999999999987
Q ss_pred ccccccceeeeccCCCccccccccccceeEEEEccCCCEEE------------EEcC-CeEEEEEeeCCCCCeeeEe---
Q 010206 318 LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL------------SRDY-MTLKLWDINMDSGPVATFQ--- 381 (515)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~------------s~~~-~~i~iwd~~~~~~~~~~~~--- 381 (515)
.. +++..+. .+...+.+++|+|+|++++ +|+. ++|++||..+ ++.+..+.
T Consensus 215 ~l----~tL~g~~---------~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t-gk~l~v~~~~~ 280 (356)
T 2w18_A 215 LL----KKMHIDD---------SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT-TLSVGVMLYCL 280 (356)
T ss_dssp EE----EEEECCC------------CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT-TEEEEEEEECC
T ss_pred EE----EEEcCCC---------cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC-CEEEEEEEeec
Confidence 63 3333211 1224678889999999874 4554 8999999986 66655442
Q ss_pred --eeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCcee-eEEECCCCCeeE
Q 010206 382 --VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMR-RQVQTPSRPSRP 458 (515)
Q Consensus 382 --~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~ 458 (515)
+|... .+..+.++.++++++.|++|+|||+.++ +...++++|...+. .++|+|++++|+
T Consensus 281 p~Gh~~~-----------------~lsg~~sg~~lASgS~DgTIkIWDl~tG-k~l~tL~gH~~~vvs~vafSPDG~~La 342 (356)
T 2w18_A 281 PPGQAGR-----------------FLEGDVKDHCAAAILTSGTIAIWDLLLG-QCTALLPPVSDQHWSFVKWSGTDSHLL 342 (356)
T ss_dssp CTTCCCC-----------------EEEEEEETTEEEEEETTSCEEEEETTTC-SEEEEECCC--CCCCEEEECSSSSEEE
T ss_pred cCCCcce-----------------eEccccCCCEEEEEcCCCcEEEEECCCC-cEEEEecCCCCCeEEEEEECCCCCEEE
Confidence 22111 1233334789999999999999999988 45588999987665 589999999999
Q ss_pred eecCCCeEEE
Q 010206 459 LGSLSGVVRR 468 (515)
Q Consensus 459 s~~~d~~v~l 468 (515)
+|+.|++|++
T Consensus 343 SGS~D~TIkl 352 (356)
T 2w18_A 343 AGQKDGNIFV 352 (356)
T ss_dssp EECTTSCEEE
T ss_pred EEECCCcEEE
Confidence 9999999999
No 125
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=3.8e-26 Score=223.71 Aligned_cols=327 Identities=10% Similarity=0.071 Sum_probs=230.0
Q ss_pred EECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEEEe
Q 010206 42 EFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWC 121 (515)
Q Consensus 42 ~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~ 121 (515)
+|+|++.++++++.++.|.+||..+++.. ..+..+. . +..++|
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~-----------------------~~i~~g~------------~-~~~v~~- 186 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIV-----------------------KVIDTGY------------A-VHISRM- 186 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEE-----------------------EEEECST------------T-EEEEEE-
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEE-----------------------EEEecCc------------c-cceEEE-
Confidence 48999999999999999999998877632 3344222 2 888999
Q ss_pred ecCCCcEEEeeeCCCeEEEEEc--cCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCC
Q 010206 122 QSANSALYLLSTNDKTIKLWKV--QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSF 199 (515)
Q Consensus 122 ~~~~~~~l~~~~~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~ 199 (515)
++++++|++++.|++|++||+ .+++.....
T Consensus 187 -spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i----------------------------------------------- 218 (543)
T 1nir_A 187 -SASGRYLLVIGRDARIDMIDLWAKEPTKVAEI----------------------------------------------- 218 (543)
T ss_dssp -CTTSCEEEEEETTSEEEEEETTSSSCEEEEEE-----------------------------------------------
T ss_pred -CCCCCEEEEECCCCeEEEEECcCCCCcEEEEE-----------------------------------------------
Confidence 567889999999999999999 554432211
Q ss_pred CCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC----CCCEEEEe--CCCcEEEEeCCCCCcccceec
Q 010206 200 PPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS----DGETFISA--DDLRINLWNLEISNQSFNIVD 273 (515)
Q Consensus 200 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~ 273 (515)
. +...+..++|+| ++++++++ .+++|.+||..+.+....+ .
T Consensus 219 -------------------------------~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i-~ 265 (543)
T 1nir_A 219 -------------------------------K-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIV-S 265 (543)
T ss_dssp -------------------------------E-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEE-E
T ss_pred -------------------------------e-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceee-c
Confidence 1 124568899999 99999887 4899999999876654322 1
Q ss_pred ccCccc---cccC-CceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 274 VKPANM---EDLT-EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 274 ~~~~~~---~~~~-~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
...... ..|. ..+.++.++|+++.++++...++.|.+||+.+.+.+. ...+. +...+..+.
T Consensus 266 ~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~--~~~i~-------------~~~~~~~~~ 330 (543)
T 1nir_A 266 TRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT--VTSIG-------------AAPFLHDGG 330 (543)
T ss_dssp CCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE--EEEEE-------------CCSSCCCEE
T ss_pred ccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce--eEEec-------------cCcCccCce
Confidence 110000 1133 3789999999886778888889999999998765321 01111 224577899
Q ss_pred EccCCCEEEEE-cC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEE-EcCC-CCEEEEec-CCCcEE
Q 010206 350 FARNGRHILSR-DY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC-LSGD-GGRVATGS-YSNLFR 424 (515)
Q Consensus 350 ~s~~~~~l~s~-~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~-~~~l~s~s-~dg~i~ 424 (515)
|+|+|++++++ .. ++|.+||+.+ ++++..+......-. . . ... ++|+ +.+++++. .|++|.
T Consensus 331 ~spdg~~l~va~~~~~~v~v~D~~t-g~l~~~i~~g~~ph~--------g--~---g~~~~~p~~g~~~~s~~~~d~~V~ 396 (543)
T 1nir_A 331 WDSSHRYFMTAANNSNKVAVIDSKD-RRLSALVDVGKTPHP--------G--R---GANFVHPKYGPVWSTSHLGDGSIS 396 (543)
T ss_dssp ECTTSCEEEEEEGGGTEEEEEETTT-TEEEEEEECSSSBCC--------T--T---CEEEEETTTEEEEEEEBSSSSEEE
T ss_pred ECCCCCEEEEEecCCCeEEEEECCC-CeEEEeeccCCCCCC--------C--C---CcccCCCCCccEEEeccCCCceEE
Confidence 99999987764 33 8999999996 777777654211000 0 0 122 4677 66677775 689999
Q ss_pred EEecCCC------CcceeeeccCCCceeeEEECCCCCeeEeec-------CCCeEEEecCCCCCcc-cc-CC----cccc
Q 010206 425 VFGCSEG------SAESTTLEASKNPMRRQVQTPSRPSRPLGS-------LSGVVRRVKGADNSAL-DA-NG----NAFD 485 (515)
Q Consensus 425 iw~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-------~d~~v~l~~~~~~~~~-~~-~~----~~~~ 485 (515)
+||+.+. .+.+++++.|...+..+.++|++++|++++ .+++|.+++....... +. .. .+.+
T Consensus 397 v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~ 476 (543)
T 1nir_A 397 LIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGE 476 (543)
T ss_dssp EEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCS
T ss_pred EEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCC
Confidence 9999872 245588899988889999999999999987 3779999544432211 11 00 0123
Q ss_pred ccCCeeEEEEcCCCCEEEEEc------CCcEEEEeC
Q 010206 486 FSMKLLHLAWHPSENSIACAA------SNSLYMYYA 515 (515)
Q Consensus 486 ~~~~i~~~~~s~~~~~la~~~------~~~~~i~~~ 515 (515)
+...+.+++|+|||+.|+++. ++.|.||+.
T Consensus 477 ~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 477 GAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD 512 (543)
T ss_dssp SCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEET
T ss_pred CCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEEC
Confidence 467899999999999999762 467888863
No 126
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.95 E-value=3.4e-26 Score=243.15 Aligned_cols=374 Identities=9% Similarity=0.019 Sum_probs=242.4
Q ss_pred ccccccceEEEEECCCCCeEEeecCC------CeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRG------GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFD 104 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~d------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 104 (515)
...|...|.+++|||||++||+++.+ ..|++|++.+++. ..+..|.
T Consensus 48 lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~------------------------~~lt~~~---- 99 (1045)
T 1k32_A 48 IVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI------------------------KRITYFS---- 99 (1045)
T ss_dssp EECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE------------------------EECCCCC----
T ss_pred eeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCe------------------------EEcccCC----
Confidence 45788999999999999999987543 4799999876642 2345555
Q ss_pred cccccccccee-------EEEEEeecCCCcEEEeeeCC------CeEEEEEccCCeeEEEeeccCCccc-----------
Q 010206 105 YLKSLEIEEKI-------NKIRWCQSANSALYLLSTND------KTIKLWKVQEKKVKKVFDWNVHPEK----------- 160 (515)
Q Consensus 105 ~~~~~~~~~~v-------~~l~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~----------- 160 (515)
..+ ..++| +++++.+++++.+ ..|.+|++.+++...+.........
T Consensus 100 --------~~~~~~~~~~~~~~~--SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~ 169 (1045)
T 1k32_A 100 --------GKSTGRRMFTDVAGF--DPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRN 169 (1045)
T ss_dssp --------EEEETTEECSEEEEE--CTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEES
T ss_pred --------CcccccccccccccC--CCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEecc
Confidence 556 89999 4567667776644 4688888888765443321100000
Q ss_pred -------C----CCCCCcc------------CCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeeccc
Q 010206 161 -------A----AGNGPIF------------GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQ 217 (515)
Q Consensus 161 -------~----~~~~~v~------------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~ 217 (515)
. .....++ .-......+.|+++ .+++++..++.+++|. +...
T Consensus 170 ~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-------------~l~~~~~~dg~~~l~~--~~~~ 234 (1045)
T 1k32_A 170 TFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-------------RIYFITDIDGFGQIYS--TDLD 234 (1045)
T ss_dssp CSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-------------EEEEEECTTSSCEEEE--EETT
T ss_pred CCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-------------EEEEEEeccCceEEEE--EeCC
Confidence 0 0000000 00000001222222 1235566778889988 3221
Q ss_pred ccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecc---cCccccccCCceEEEEEe-c
Q 010206 218 ETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDV---KPANMEDLTEVITSAEFH-P 293 (515)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~i~~i~~~-p 293 (515)
.. ..+. +..|. .+...+|+|+|+.|+++.++.|.+||+.. .....+..- .......|...+.+++|+ |
T Consensus 235 g~-----~~~~-l~~~~-~~~~~~~SpDG~~la~~~~~~i~~~d~~~-~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p 306 (1045)
T 1k32_A 235 GK-----DLRK-HTSFT-DYYPRHLNTDGRRILFSKGGSIYIFNPDT-EKIEKIEIGDLESPEDRIISIPSKFAEDFSPL 306 (1045)
T ss_dssp SC-----SCEE-CCCCC-SSCEEEEEESSSCEEEEETTEEEEECTTT-CCEEECCCCCCCBCCSEEEECGGGGEEEEEEC
T ss_pred CC-----cceE-ecCCC-CcceeeEcCCCCEEEEEeCCEEEEecCCc-eEeeeeccCcccccccccccccccceeeecCC
Confidence 11 1111 23333 45677999999999998889999999843 222111000 000111244578999999 9
Q ss_pred CCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccc-ceeEEEEccCCCEEEEEcC-CeEE-EEEe
Q 010206 294 THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA-SISDIKFARNGRHILSRDY-MTLK-LWDI 370 (515)
Q Consensus 294 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~s~~~-~~i~-iwd~ 370 (515)
+| +.|++++ ++.+.+|++..+.... +..|.. .+..++|+ ||+.|+.+++ +.+. +||+
T Consensus 307 dG-~~la~~~-~~~i~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~ 366 (1045)
T 1k32_A 307 DG-DLIAFVS-RGQAFIQDVSGTYVLK-----------------VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDY 366 (1045)
T ss_dssp GG-GCEEEEE-TTEEEEECTTSSBEEE-----------------CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEET
T ss_pred CC-CEEEEEE-cCEEEEEcCCCCceEE-----------------ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEEC
Confidence 99 7888777 8899999987765311 223334 78999999 9999998776 7777 8888
Q ss_pred eCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEE
Q 010206 371 NMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ 450 (515)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~ 450 (515)
.. ++ ...+..+... +..++|+|||++|++++.++.|++||+.++ .....+..|...+..++|
T Consensus 367 ~~-~~-~~~l~~~~~~---------------~~~~~~SpDG~~la~~~~~~~v~~~d~~tg-~~~~~~~~~~~~v~~~~~ 428 (1045)
T 1k32_A 367 RT-GK-AEKFEENLGN---------------VFAMGVDRNGKFAVVANDRFEIMTVDLETG-KPTVIERSREAMITDFTI 428 (1045)
T ss_dssp TT-CC-EEECCCCCCS---------------EEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEEECSSSCCCCEEE
T ss_pred CC-CC-ceEecCCccc---------------eeeeEECCCCCEEEEECCCCeEEEEECCCC-ceEEeccCCCCCccceEE
Confidence 64 33 3333333222 458999999999999999999999999987 444566688899999999
Q ss_pred CCCCCeeEeecCCC----------eEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcC
Q 010206 451 TPSRPSRPLGSLSG----------VVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS 507 (515)
Q Consensus 451 ~~~~~~l~s~~~d~----------~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~ 507 (515)
+|+|++|++++.++ .+++++.... + ......+...+..++|+|||++|++++.
T Consensus 429 SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g---~-~~~l~~~~~~~~~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 429 SDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR---K-IFAATTENSHDYAPAFDADSKNLYYLSY 491 (1045)
T ss_dssp CTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT---E-EEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred CCCCCeEEEEecCccccccCCCCCeEEEEECCCC---c-EEEeeCCCcccCCceEcCCCCEEEEEec
Confidence 99999998887654 7887332211 1 1123345677889999999999997775
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=4.4e-27 Score=223.63 Aligned_cols=217 Identities=14% Similarity=0.117 Sum_probs=159.3
Q ss_pred ccCcCCeEEEEecCCCCEEEEe-CC---CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEE-EEecC
Q 010206 231 HAHDYHINSISNNSDGETFISA-DD---LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSK 305 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~s~-~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~-~~~~d 305 (515)
.+|...+.+++|+|+++.|+++ .+ ..|++||+++++.. .+..|...+.+++|+|++ +.|+ +++.+
T Consensus 175 ~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~---------~l~~~~~~~~~~~~spdg-~~la~~~~~~ 244 (415)
T 2hqs_A 175 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---------QVASFPRHNGAPAFSPDG-SKLAFALSKT 244 (415)
T ss_dssp EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---------EEECCSSCEEEEEECTTS-SEEEEEECTT
T ss_pred eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE---------EeecCCCcccCEEEcCCC-CEEEEEEecC
Confidence 3566789999999999999987 55 49999999876543 345577889999999999 6666 66665
Q ss_pred Ce--EEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--C--eEEEEEeeCCCCCeee
Q 010206 306 GS--IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--M--TLKLWDINMDSGPVAT 379 (515)
Q Consensus 306 g~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~--~i~iwd~~~~~~~~~~ 379 (515)
+. |++||+++++.. . +..|...+.+++|+|||++|+.+++ + .|.+||+.. ++ ...
T Consensus 245 g~~~i~~~d~~~~~~~-----~------------l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~-~~-~~~ 305 (415)
T 2hqs_A 245 GSLNLYVMDLASGQIR-----Q------------VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING-GA-PQR 305 (415)
T ss_dssp SSCEEEEEETTTCCEE-----E------------CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-SC-CEE
T ss_pred CCceEEEEECCCCCEE-----e------------CcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC-CC-EEE
Confidence 54 999999876531 1 3345567999999999998887653 4 677778764 33 333
Q ss_pred EeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCC---CcEEEEecCCCCcceeeeccCCCceeeEEECCCCCe
Q 010206 380 FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPS 456 (515)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d---g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 456 (515)
+..+... +..++|+|||++|++++.+ ..|++||+.++.. ..+..+. .+..++|+|++++
T Consensus 306 l~~~~~~---------------~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~--~~l~~~~-~~~~~~~spdg~~ 367 (415)
T 2hqs_A 306 ITWEGSQ---------------NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTF-LDETPSLAPNGTM 367 (415)
T ss_dssp CCCSSSE---------------EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSS-SCEEEEECTTSSE
T ss_pred EecCCCc---------------ccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE--EEecCCC-CcCCeEEcCCCCE
Confidence 3333222 4489999999999988764 5899999997743 3455554 8899999999999
Q ss_pred eEeecCCC---eEEEec--CCCCCccccCCccccccCCeeEEEEcCCCC
Q 010206 457 RPLGSLSG---VVRRVK--GADNSALDANGNAFDFSMKLLHLAWHPSEN 500 (515)
Q Consensus 457 l~s~~~d~---~v~l~~--~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 500 (515)
|++++.++ .+.+++ +.... ....+.+.|.+++|+|...
T Consensus 368 l~~~s~~~~~~~l~~~d~~g~~~~------~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 368 VIYSSSQGMGSVLNLVSTDGRFKA------RLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EEEEEEETTEEEEEEEETTSCCEE------ECCCSSSEEEEEEECCCCC
T ss_pred EEEEEcCCCccEEEEEECCCCcEE------EeeCCCCCCcCCccccccc
Confidence 99988876 566633 22211 2335778999999999754
No 128
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=7.3e-25 Score=207.74 Aligned_cols=318 Identities=8% Similarity=0.067 Sum_probs=211.9
Q ss_pred cccccceEEEEECCCCCeE-EeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHL-ATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~l-asg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
+.+...+.+++|+|+|++| ++++.|+.|++||+.+++.. ..+..+
T Consensus 28 ~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~-----------------------~~~~~~----------- 73 (391)
T 1l0q_A 28 IPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI-----------------------ATVPAG----------- 73 (391)
T ss_dssp EECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEE-----------------------EEEECS-----------
T ss_pred eecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEE-----------------------EEEECC-----------
Confidence 3445568999999999976 67778999999999776532 223322
Q ss_pred ccceeEEEEEeecCCCcEEEee-eCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLS-TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..+.+++|+ +++++++++ +.|+.|++||+.+++......... .+. .++|+|+|+.+
T Consensus 74 --~~v~~~~~s--pdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~---------~~~-------~~~~s~dg~~l--- 130 (391)
T 1l0q_A 74 --SSPQGVAVS--PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK---------SPL-------GLALSPDGKKL--- 130 (391)
T ss_dssp --SSEEEEEEC--TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS---------SEE-------EEEECTTSSEE---
T ss_pred --CCccceEEC--CCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC---------Ccc-------eEEECCCCCEE---
Confidence 459999994 566677554 567999999999988766554331 122 78999999865
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEE-Ee-CCCcEEEEeCCCCCc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI-SA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~-~d~~i~iwd~~~~~~ 267 (515)
+++++.++.|++|| +... +....+ .. ...+.+++|+|+++.|+ ++ .++.|++||+++.+.
T Consensus 131 --------~~~~~~~~~v~~~d--~~~~------~~~~~~-~~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~ 192 (391)
T 1l0q_A 131 --------YVTNNGDKTVSVIN--TVTK------AVINTV-SV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV 192 (391)
T ss_dssp --------EEEETTTTEEEEEE--TTTT------EEEEEE-EC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred --------EEEeCCCCEEEEEE--CCCC------cEEEEE-ec-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE
Confidence 14667789999999 3322 222222 22 35679999999999884 55 789999999987654
Q ss_pred ccceecccCccccccCCceEEEEEecCCCcEEEEEe---cCCeEEEEecCcccccccccceeeeccCCCccccccccccc
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 344 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~---~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (515)
... ..+...+.+++|+|++ ..|++++ .++.|++||+++++.. ..+. .| ..
T Consensus 193 ~~~---------~~~~~~~~~~~~~~~g-~~l~~~~~~~~~~~v~~~d~~~~~~~----~~~~------------~~-~~ 245 (391)
T 1l0q_A 193 IDT---------VKVEAAPSGIAVNPEG-TKAYVTNVDKYFNTVSMIDTGTNKIT----ARIP------------VG-PD 245 (391)
T ss_dssp EEE---------EECSSEEEEEEECTTS-SEEEEEEECSSCCEEEEEETTTTEEE----EEEE------------CC-SS
T ss_pred EEE---------EecCCCccceEECCCC-CEEEEEecCcCCCcEEEEECCCCeEE----EEEe------------cC-CC
Confidence 321 2245678999999998 7777777 6899999999887542 1222 12 34
Q ss_pred eeEEEEccCCCEEE-EEcC-CeEEEEEeeCCCCCeeeEeeeccccccc--cccccCCCccceeeEEEcCC------C--C
Q 010206 345 ISDIKFARNGRHIL-SRDY-MTLKLWDINMDSGPVATFQVHEHLRPKL--CDLYENDSIFDKFECCLSGD------G--G 412 (515)
Q Consensus 345 i~~~~~s~~~~~l~-s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~------~--~ 412 (515)
+.+++|+|++++|+ +++. +.|++||+.+ ++.+..+..+....... ...........+......+. . .
T Consensus 246 ~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~ 324 (391)
T 1l0q_A 246 PAGIAVTPDGKKVYVALSFXNTVSVIDTAT-NTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPV 324 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCE
T ss_pred ccEEEEccCCCEEEEEcCCCCEEEEEECCC-CcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceE
Confidence 78999999999884 5554 9999999986 77777776554321100 00000111111111222111 1 3
Q ss_pred EEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEe
Q 010206 413 RVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPL 459 (515)
Q Consensus 413 ~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 459 (515)
.+...+.|..+++|++.++... .+..+ ...|+++|.+.++
T Consensus 325 ~~~~~~~~~~~~~W~~~~g~~~-----~~~~~--~~~~~~~g~y~~~ 364 (391)
T 1l0q_A 325 QFTDLSKDATEWKWDFGDGSSS-----KKQNP--THTYSETGIYTVR 364 (391)
T ss_dssp EEEECCBSCSEEEEECSSSCEE-----CSSSC--EECCSSCEEEEEE
T ss_pred EEEeCCCCceEEEEECCCCccc-----CcCCC--eEEeCCCceEEEE
Confidence 4566678899999999877321 22223 3578888877644
No 129
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=1.8e-26 Score=204.63 Aligned_cols=238 Identities=11% Similarity=0.040 Sum_probs=152.9
Q ss_pred cccceEEEEECCC----CCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 34 EVDIISAIEFDKS----GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 34 h~~~v~~v~~s~~----g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
|...|.+++|+|| ++++++++. .++||++.+++.........+.....+.++|+.+.+..+.+|.
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~--~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~--------- 178 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGN--IKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMP--------- 178 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEE--EEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECC---------
T ss_pred cccceEEEEECCCccccccEEEeCCC--eEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCC---------
Confidence 4568999999999 999999874 4888998766543111111233444667788888888888887
Q ss_pred cccceeEEEEEee-cCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccc
Q 010206 110 EIEEKINKIRWCQ-SANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (515)
Q Consensus 110 ~~~~~v~~l~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~ 188 (515)
..++.++|++ ..++.+|++++.|++|++||+.+++....+..+... ...+. .++|+|+|+.+
T Consensus 179 ---~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~-----v~~v~-------~vafSpdG~~l-- 241 (356)
T 2w18_A 179 ---PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSY-----QASVC-------HKAYSEMGLLF-- 241 (356)
T ss_dssp ---CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC--------CCCE-------EEEEEETTEEE--
T ss_pred ---CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcc-----eeeeE-------EEEECCCCCEE--
Confidence 6688999987 556789999999999999999999876665422100 00011 33455555443
Q ss_pred ccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCc
Q 010206 189 NFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
+++ .+.. ....+++| .|++|++||+.+++.
T Consensus 242 ----------vs~------------------------------s~~~---------~~w~laSGs~D~tIklWd~~tgk~ 272 (356)
T 2w18_A 242 ----------IVL------------------------------SHPC---------AKESESLRSPVFQLIVINPKTTLS 272 (356)
T ss_dssp ----------EEE------------------------------C---------------------CCEEEEEEETTTTEE
T ss_pred ----------EEe------------------------------ccCC---------CcceeeccCCCcEEEEEECCCCEE
Confidence 000 0000 00134667 799999999987754
Q ss_pred ccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccccee-
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS- 346 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~- 346 (515)
...+. .. .-.+|...+.+..++ + .++++|+.|++|+|||+.+++.... +.+|...+.
T Consensus 273 l~v~~-~~--~p~Gh~~~~lsg~~s--g-~~lASgS~DgTIkIWDl~tGk~l~t----------------L~gH~~~vvs 330 (356)
T 2w18_A 273 VGVML-YC--LPPGQAGRFLEGDVK--D-HCAAAILTSGTIAIWDLLLGQCTAL----------------LPPVSDQHWS 330 (356)
T ss_dssp EEEEE-EC--CCTTCCCCEEEEEEE--T-TEEEEEETTSCEEEEETTTCSEEEE----------------ECCC--CCCC
T ss_pred EEEEE-ee--ccCCCcceeEccccC--C-CEEEEEcCCCcEEEEECCCCcEEEE----------------ecCCCCCeEE
Confidence 32110 00 013566555555554 5 7899999999999999999876422 445555544
Q ss_pred EEEEccCCCEEEEEcC-CeEEEEEe
Q 010206 347 DIKFARNGRHILSRDY-MTLKLWDI 370 (515)
Q Consensus 347 ~~~~s~~~~~l~s~~~-~~i~iwd~ 370 (515)
+++|+|||++|++|+. ++|+|||+
T Consensus 331 ~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 331 FVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEECCCCCEEEEEECCCcEEEecC
Confidence 6899999999999975 99999996
No 130
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=2.6e-25 Score=228.85 Aligned_cols=335 Identities=8% Similarity=0.047 Sum_probs=212.3
Q ss_pred ccceEEEEECCCCCeEEeecC-CC-----eEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccc
Q 010206 35 VDIISAIEFDKSGDHLATGDR-GG-----RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (515)
Q Consensus 35 ~~~v~~v~~s~~g~~lasg~~-dg-----~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (515)
...|.+++|||||++|++++. |+ .|++||+.+++.... +..... .|....+.. ... .......
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~----~~~~~~----~~~~~~~~~-~~~--~~~~~~~ 104 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLL----VDSKVV----LPGTETLSD-EEK--ARRERQR 104 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEE----ECGGGT----C---------------------
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEc----cchhhc----ccccccccc-hhh--hhhhhhh
Confidence 467999999999999999987 88 899999987764200 000000 000000000 000 0000000
Q ss_pred ccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCC---eeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCc
Q 010206 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK---KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (515)
Q Consensus 109 ~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 185 (515)
......|.+++| ++|+++|++++. +.|.+||+.++ +...
T Consensus 105 ~~~~~~v~~~~~--SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~----------------------------------- 146 (741)
T 2ecf_A 105 IAAMTGIVDYQW--SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQ----------------------------------- 146 (741)
T ss_dssp --CCEESCCCEE--CTTSSEEEEEET-TEEEEEESSSCSTTSCCB-----------------------------------
T ss_pred hccccCcceeEE--CCCCCEEEEEeC-CcEEEEECCCCCcceEEE-----------------------------------
Confidence 000023667777 456667777665 77777777654 2100
Q ss_pred cccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCC
Q 010206 186 GERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEIS 265 (515)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~ 265 (515)
+..|...+.+++|+|||+.|+++.++.|++||+.++
T Consensus 147 --------------------------------------------l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g 182 (741)
T 2ecf_A 147 --------------------------------------------LTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASG 182 (741)
T ss_dssp --------------------------------------------CCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTT
T ss_pred --------------------------------------------cccCCcccccccCCCCCCEEEEEeCCcEEEEecCCC
Confidence 234556789999999999999987779999999865
Q ss_pred CcccceecccCccccccCC----------------ceEEEEEecCCCcEEEEEecCC-----------------------
Q 010206 266 NQSFNIVDVKPANMEDLTE----------------VITSAEFHPTHCNMLAYSSSKG----------------------- 306 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~----------------~i~~i~~~p~~~~~l~~~~~dg----------------------- 306 (515)
+... + ...+.. .+.+++|+||| +.|++++.|+
T Consensus 183 ~~~~-~-------~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~ 253 (741)
T 2ecf_A 183 RQMQ-L-------TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRY 253 (741)
T ss_dssp EEEE-C-------CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEEC
T ss_pred CEEE-e-------ccCCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeec
Confidence 4321 1 111111 24789999999 7888887665
Q ss_pred ----------eEEEEecCc-ccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-----C-CeEEEEE
Q 010206 307 ----------SIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-----Y-MTLKLWD 369 (515)
Q Consensus 307 ----------~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-----~-~~i~iwd 369 (515)
.|.+||+.+ ++... +.. ...|...+..++| |||++|+.+. . ..|++||
T Consensus 254 ~~~g~~~~~~~l~~~d~~~~~~~~~-----~~~---------~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d 318 (741)
T 2ecf_A 254 PAAGDANVQVKLGVISPAEQAQTQW-----IDL---------GKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVT 318 (741)
T ss_dssp CBTTSCCCEEEEEEECSSTTCCCEE-----ECC---------CSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEE
T ss_pred CCCCCCCCeeEEEEEECCCCCceEE-----ecC---------CCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEE
Confidence 788888877 65311 100 0134567999999 9999998642 2 6899999
Q ss_pred eeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeE-
Q 010206 370 INMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQ- 448 (515)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~- 448 (515)
+.+ ++....+..+.... +..+..++|+|||+++++++.||.++||.+...+. ...+..+...+..+
T Consensus 319 ~~~-g~~~~~~~~~~~~~-----------~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~ 385 (741)
T 2ecf_A 319 LAS-NQQRVLAHETSPTW-----------VPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELL 385 (741)
T ss_dssp TTT-CCEEEEEEEECSSC-----------CCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEE
T ss_pred CCC-CceEEEEEcCCCCc-----------CCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEe
Confidence 986 66555555443210 00123789999999999999999888887763333 56777777788777
Q ss_pred EECCCCCeeE-eecCCC--eEEE--ec--CCCCCccccCCccccccCCeeEEEEcCCCCEEEEEc
Q 010206 449 VQTPSRPSRP-LGSLSG--VVRR--VK--GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 506 (515)
Q Consensus 449 ~~~~~~~~l~-s~~~d~--~v~l--~~--~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~ 506 (515)
.|+|+++.++ +++.++ .++| .+ +.... .+.....+..++||||+++|++..
T Consensus 386 ~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~-------~l~~~~~~~~~~~spdg~~l~~~~ 443 (741)
T 2ecf_A 386 AVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQ-------RLSKAPGMHSASFARNASVYVDSW 443 (741)
T ss_dssp EEETTTTEEEEEECSSCTTCBEEEEEETTCCCCE-------ECCCSCSEEEEEECTTSSEEEEEE
T ss_pred EEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCee-------ecccCCCceEEEECCCCCEEEEEe
Confidence 5999998764 555555 6776 21 21111 112256688999999999998654
No 131
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.94 E-value=1.2e-24 Score=231.30 Aligned_cols=363 Identities=10% Similarity=0.047 Sum_probs=244.1
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
.+|...+.+++|+++ .++++++.+|.+.||.+..... ....+..|.
T Consensus 200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~----------------------~~~~l~~~~----------- 245 (1045)
T 1k32_A 200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGK----------------------DLRKHTSFT----------- 245 (1045)
T ss_dssp ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSC----------------------SCEECCCCC-----------
T ss_pred cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCC----------------------cceEecCCC-----------
Confidence 478899999999998 6777888889999998753211 011223332
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccC---CCCCCccCCCCcCCCceee-cCCCccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKA---AGNGPIFGSHVSAIPKSYM-ANGGCGE 187 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~-~~g~~l~ 187 (515)
.+..++|+| +++.++.+ .++.|.+|++...++. ........... ...+.+. .++|+ |||+.+
T Consensus 246 --~~~~~~~Sp--DG~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~-------~~~~S~pdG~~l- 311 (1045)
T 1k32_A 246 --DYYPRHLNT--DGRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKF-------AEDFSPLDGDLI- 311 (1045)
T ss_dssp --SSCEEEEEE--SSSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGG-------EEEEEECGGGCE-
T ss_pred --CcceeeEcC--CCCEEEEE-eCCEEEEecCCceEee-eeccCcccccccccccccccc-------eeeecCCCCCEE-
Confidence 256678854 56678777 5899999999554433 21111000000 0001122 78999 999987
Q ss_pred cccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcC-CeEEEEecCCCCEEEEe-CCCcEE-EEeCCC
Q 010206 188 RNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDY-HINSISNNSDGETFISA-DDLRIN-LWNLEI 264 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~-~d~~i~-iwd~~~ 264 (515)
+.+. ++.+.+|+ ....+ .. . +..|.. .+..++|+ +++.|+++ .+..+. +||+..
T Consensus 312 -----------a~~~-~~~i~~~~--~~~~~------~~-~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~ 368 (1045)
T 1k32_A 312 -----------AFVS-RGQAFIQD--VSGTY------VL-K-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT 368 (1045)
T ss_dssp -----------EEEE-TTEEEEEC--TTSSB------EE-E-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT
T ss_pred -----------EEEE-cCEEEEEc--CCCCc------eE-E-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC
Confidence 5444 67888887 33221 11 1 345666 89999999 99999987 777788 889875
Q ss_pred CCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccc
Q 010206 265 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 344 (515)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (515)
.+.. .+..|...+..++|+|++ +.|++++.++.|++||+.+++... ...+|...
T Consensus 369 ~~~~---------~l~~~~~~~~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~~~~----------------~~~~~~~~ 422 (1045)
T 1k32_A 369 GKAE---------KFEENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPTV----------------IERSREAM 422 (1045)
T ss_dssp CCEE---------ECCCCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEE----------------EEECSSSC
T ss_pred CCce---------EecCCccceeeeEECCCC-CEEEEECCCCeEEEEECCCCceEE----------------eccCCCCC
Confidence 5422 233677889999999999 899999999999999998876421 12345577
Q ss_pred eeEEEEccCCCEEEEEcC-----------CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCE
Q 010206 345 ISDIKFARNGRHILSRDY-----------MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 413 (515)
Q Consensus 345 i~~~~~s~~~~~l~s~~~-----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 413 (515)
+.+++|||||++|++++. +.|++||+.. ++ ...+..+... +..++|+|||++
T Consensus 423 v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~-g~-~~~l~~~~~~---------------~~~~~~spdG~~ 485 (1045)
T 1k32_A 423 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG-RK-IFAATTENSH---------------DYAPAFDADSKN 485 (1045)
T ss_dssp CCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT-TE-EEECSCSSSB---------------EEEEEECTTSCE
T ss_pred ccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC-Cc-EEEeeCCCcc---------------cCCceEcCCCCE
Confidence 899999999999987543 3899999985 43 4444444322 347899999999
Q ss_pred EEEecCCCcEEEEecCCCC------------------------------------------cceeeeccCCCceeeEEEC
Q 010206 414 VATGSYSNLFRVFGCSEGS------------------------------------------AESTTLEASKNPMRRQVQT 451 (515)
Q Consensus 414 l~s~s~dg~i~iw~~~~~~------------------------------------------~~~~~~~~~~~~v~~~~~~ 451 (515)
|++++.++...+|+..... .....+..|...+..+.++
T Consensus 486 l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s 565 (1045)
T 1k32_A 486 LYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPL 565 (1045)
T ss_dssp EEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEEC
T ss_pred EEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEc
Confidence 9999887776666532210 0112334466778889999
Q ss_pred CCCCeeEe-----------ecCC--CeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcEEEEeC
Q 010206 452 PSRPSRPL-----------GSLS--GVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 515 (515)
Q Consensus 452 ~~~~~l~s-----------~~~d--~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~i~~~ 515 (515)
|+++++++ .+.+ ..+.+++..... . .. ....+..++|||||++|++++.+.+.+|++
T Consensus 566 ~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~---~--~~--l~~~v~~~~~S~DG~~l~~~~~~~i~~~d~ 635 (1045)
T 1k32_A 566 ESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK---V--TE--VKNNLTDLRLSADRKTVMVRKDDGKIYTFP 635 (1045)
T ss_dssp SSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC---E--EE--EEEEEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred CCCeEEEEecccCcccccccccCCCceEEEEECCCCc---E--EE--eecCcceEEECCCCCEEEEEcCCcEEEEeC
Confidence 99987775 1233 344443221111 0 00 125688999999999999999889999863
No 132
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.94 E-value=1e-24 Score=223.83 Aligned_cols=336 Identities=11% Similarity=0.022 Sum_probs=206.5
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccccee
Q 010206 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (515)
Q Consensus 36 ~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (515)
..+.+++|+|||+++++ +.||.|++||+.+++.. ..+..|... ...|
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~-----------------------~~~~~~~~~---------~~~v 63 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTST-----------------------VLIEGKKIE---------SLRA 63 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE-----------------------EEECTTTTT---------TTTC
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEE-----------------------EEecccccc---------cccc
Confidence 34678999999998876 68999999999887642 223333300 0148
Q ss_pred EEEEEeecCCCcEEEeeeCC---------CeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcc
Q 010206 116 NKIRWCQSANSALYLLSTND---------KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (515)
Q Consensus 116 ~~l~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l 186 (515)
.+++| ++|+++|++++.+ +.+.+||+.+++...+..
T Consensus 64 ~~~~~--SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~--------------------------------- 108 (723)
T 1xfd_A 64 IRYEI--SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDP--------------------------------- 108 (723)
T ss_dssp SEEEE--CTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCC---------------------------------
T ss_pred ceEEE--CCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccC---------------------------------
Confidence 99999 5678899998764 677788887765311100
Q ss_pred ccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCC
Q 010206 187 ERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISN 266 (515)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~ 266 (515)
..+|...+..++|+|||+.|+.+.++.|++||+.+++
T Consensus 109 -------------------------------------------~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~ 145 (723)
T 1xfd_A 109 -------------------------------------------PEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQ 145 (723)
T ss_dssp -------------------------------------------TTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSC
T ss_pred -------------------------------------------CccccccccccEECCCCCEEEEEECCeEEEEECCCCc
Confidence 1234455778899999999999866899999998765
Q ss_pred cccceecccCc--cccccC---------CceEEEEEecCCCcEEEEEecCC-----------------------------
Q 010206 267 QSFNIVDVKPA--NMEDLT---------EVITSAEFHPTHCNMLAYSSSKG----------------------------- 306 (515)
Q Consensus 267 ~~~~~~~~~~~--~~~~~~---------~~i~~i~~~p~~~~~l~~~~~dg----------------------------- 306 (515)
... +...... .+.++. ..+.+++|+||| +.|++++.++
T Consensus 146 ~~~-~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 223 (723)
T 1xfd_A 146 AIR-VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGS 223 (723)
T ss_dssp CEE-EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTS
T ss_pred eEE-EecCCCCCceECcccceeEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCC
Confidence 331 1100000 000111 133789999999 8888877543
Q ss_pred -----eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc----C-CeEEEEEeeCCCCC
Q 010206 307 -----SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----Y-MTLKLWDINMDSGP 376 (515)
Q Consensus 307 -----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~----~-~~i~iwd~~~~~~~ 376 (515)
.|++||+.+++.. ..+..+. .+..+...+..++|||||++|++.. . ..|++||+.+ ++.
T Consensus 224 ~~~~~~l~~~d~~~~~~~----~~l~~~~------~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~-g~~ 292 (723)
T 1xfd_A 224 ENPSISLHVIGLNGPTHD----LEMMPPD------DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT-GVC 292 (723)
T ss_dssp CCCEEEEEEEESSSSCCC----EECCCCC------CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT-CCE
T ss_pred CCCeeEEEEEECCCCcee----EEeeCCc------cCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC-Ccc
Confidence 6788888766521 1111100 0122346789999999999887642 2 6899999985 665
Q ss_pred eeeEeeec-cccccccccccCCCccceeeEEEcCCCCEEEE--ecCCC------cEEEEecCCCCcc--eeeeccCCCce
Q 010206 377 VATFQVHE-HLRPKLCDLYENDSIFDKFECCLSGDGGRVAT--GSYSN------LFRVFGCSEGSAE--STTLEASKNPM 445 (515)
Q Consensus 377 ~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s--~s~dg------~i~iw~~~~~~~~--~~~~~~~~~~v 445 (515)
...+..+. ..... . ...++|+|||+.|+. +..++ .|++||+.+++.. ...+..+...+
T Consensus 293 ~~~~~~~~~~~~~~---------~--~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~ 361 (723)
T 1xfd_A 293 TKKHEDESEAWLHR---------Q--NEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDV 361 (723)
T ss_dssp EEEEEEECSSCCCC---------C--CCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCE
T ss_pred eEEEEeccCCEEec---------c--CCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEE
Confidence 55444332 11100 0 016899999997774 44666 5777773233230 23444333334
Q ss_pred e-eEEECCCCCeeEeecCC---CeEEE--ecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEc
Q 010206 446 R-RQVQTPSRPSRPLGSLS---GVVRR--VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 506 (515)
Q Consensus 446 ~-~~~~~~~~~~l~s~~~d---~~v~l--~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~ 506 (515)
. .++|+|+++.|+..+.+ +.++| ++...............+...+..++|+|||++|++..
T Consensus 362 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 362 TKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp EEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred EeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence 4 46899999998765544 66776 22111000000000011456789999999999998654
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.92 E-value=1.7e-22 Score=197.87 Aligned_cols=291 Identities=11% Similarity=0.098 Sum_probs=205.0
Q ss_pred eEEEEECCCCCeEEeecCCCeEEEEEc--ccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccccee
Q 010206 38 ISAIEFDKSGDHLATGDRGGRVVLFER--TDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (515)
Q Consensus 38 v~~v~~s~~g~~lasg~~dg~v~vw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (515)
+.+++|+|||++|++++.|+.|.+||+ .+++. ...+..+ ..+
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~-----------------------~~~i~~g-------------~~p 224 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK-----------------------VAEIKIG-------------IEA 224 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE-----------------------EEEEECC-------------SEE
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcE-----------------------EEEEecC-------------CCc
Confidence 889999999999999999999999998 54432 2233322 558
Q ss_pred EEEEEeecC----CCcEEEeee-CCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 116 NKIRWCQSA----NSALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 116 ~~l~~~~~~----~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..++| ++ +++++++++ .+++|.+||..+++...........
T Consensus 225 ~~va~--sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~-------------------------------- 270 (543)
T 1nir_A 225 RSVES--SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT-------------------------------- 270 (543)
T ss_dssp EEEEE--CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEEC--------------------------------
T ss_pred ceEEe--CCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcc--------------------------------
Confidence 99999 45 688998887 4899999999888765543321000
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccC-cCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAH-DYHINSISNNSDGETFISA--DDLRINLWNLEISNQ 267 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~ 267 (515)
... ...| ...+.++.++|++..++++ .++.|.+||+.+.+.
T Consensus 271 --------------------------~~~----------~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~ 314 (543)
T 1nir_A 271 --------------------------VDT----------QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN 314 (543)
T ss_dssp --------------------------SSS----------CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSS
T ss_pred --------------------------cCc----------cccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCc
Confidence 000 0012 2378899999987776654 799999999987653
Q ss_pred ccceecccCccccccCCceEEEEEecCCCcEEE-EEecCCeEEEEecCcccccccccceeeeccCCCcccccccccccee
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 346 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 346 (515)
.. +. .+ .+...+..+.|+|++ ++|+ ++..+++|.+||+.++++.. .+.... ..|.+...
T Consensus 315 l~-~~-----~i-~~~~~~~~~~~spdg-~~l~va~~~~~~v~v~D~~tg~l~~----~i~~g~--------~ph~g~g~ 374 (543)
T 1nir_A 315 LT-VT-----SI-GAAPFLHDGGWDSSH-RYFMTAANNSNKVAVIDSKDRRLSA----LVDVGK--------TPHPGRGA 374 (543)
T ss_dssp CE-EE-----EE-ECCSSCCCEEECTTS-CEEEEEEGGGTEEEEEETTTTEEEE----EEECSS--------SBCCTTCE
T ss_pred ce-eE-----Ee-ccCcCccCceECCCC-CEEEEEecCCCeEEEEECCCCeEEE----eeccCC--------CCCCCCCc
Confidence 32 10 11 245567889999999 6555 55568999999999987532 222211 11323233
Q ss_pred EEEEccC-CCEEEEEc--CCeEEEEEeeCC------CCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEe
Q 010206 347 DIKFARN-GRHILSRD--YMTLKLWDINMD------SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 417 (515)
Q Consensus 347 ~~~~s~~-~~~l~s~~--~~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 417 (515)
.+ ++|+ ++.++++. +++|.+||+.+. .+.++++..|... +..++++|+|++|+++
T Consensus 375 ~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~---------------~~~v~~~pdg~~l~v~ 438 (543)
T 1nir_A 375 NF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG---------------SLFIKTHPKSSHLYVD 438 (543)
T ss_dssp EE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC---------------CCCEECCTTCCEEEEC
T ss_pred cc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCC---------------ceEEEcCCCCCcEEEe
Confidence 33 4676 66677764 489999999852 5677888777543 2379999999999998
Q ss_pred c-------CCCcEEEEecCCCCcceeee--------ccCCCceeeEEECCCCCeeEeec-----CCCeEEEec
Q 010206 418 S-------YSNLFRVFGCSEGSAESTTL--------EASKNPMRRQVQTPSRPSRPLGS-----LSGVVRRVK 470 (515)
Q Consensus 418 s-------~dg~i~iw~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~s~~-----~d~~v~l~~ 470 (515)
+ .+++|.+||+.+++.....+ ..+...+..++|+|+|+.++.+. .|+.|.+++
T Consensus 439 ~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D 511 (543)
T 1nir_A 439 TTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD 511 (543)
T ss_dssp CTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEE
T ss_pred cCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEE
Confidence 7 27899999999886553443 45678899999999999988663 478999844
No 134
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=2.3e-22 Score=191.13 Aligned_cols=260 Identities=12% Similarity=0.113 Sum_probs=189.2
Q ss_pred ccccccceEEEEECC--------------CCCeEEeecCC------CeEEEEEcccCcccCccccCcccccccccCCccc
Q 010206 31 EVQEVDIISAIEFDK--------------SGDHLATGDRG------GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF 90 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~--------------~g~~lasg~~d------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (515)
..+|...+..+++++ .+..++.++.+ +.|++||+.+...
T Consensus 113 ~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~--------------------- 171 (415)
T 2hqs_A 113 YKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ--------------------- 171 (415)
T ss_dssp EEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC---------------------
T ss_pred EEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCC---------------------
Confidence 346666677666664 25566665543 7999999864332
Q ss_pred eeeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCC---eEEEEEccCCeeEEEeeccCCcccCCCCCCc
Q 010206 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDK---TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPI 167 (515)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 167 (515)
..+.+|. ..|.+++| ++++++|++++.|+ .|++||+.+++...
T Consensus 172 ---~~l~~~~------------~~v~~~~~--Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~----------------- 217 (415)
T 2hqs_A 172 ---FVVHRSP------------QPLMSPAW--SPDGSKLAYVTFESGRSALVIQTLANGAVRQ----------------- 217 (415)
T ss_dssp ---EEEEEES------------SCEEEEEE--CTTSSEEEEEECTTSSCEEEEEETTTCCEEE-----------------
T ss_pred ---EEEeCCC------------CcceeeEE--cCCCCEEEEEEecCCCcEEEEEECCCCcEEE-----------------
Confidence 3345565 77999999 56788999998875 99999998775322
Q ss_pred cCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCC
Q 010206 168 FGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE 247 (515)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 247 (515)
+..|...+.+++|+|+++
T Consensus 218 --------------------------------------------------------------l~~~~~~~~~~~~spdg~ 235 (415)
T 2hqs_A 218 --------------------------------------------------------------VASFPRHNGAPAFSPDGS 235 (415)
T ss_dssp --------------------------------------------------------------EECCSSCEEEEEECTTSS
T ss_pred --------------------------------------------------------------eecCCCcccCEEEcCCCC
Confidence 123446788999999999
Q ss_pred EEE-Ee-CCC--cEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEec-CC--eEEEEecCcccccc
Q 010206 248 TFI-SA-DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KG--SIRLIDMRQSALCD 320 (515)
Q Consensus 248 ~l~-s~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~-dg--~i~~wd~~~~~~~~ 320 (515)
.|+ ++ .++ .|++||+.+++.. .+..|...+.+++|+|++ +.|++++. ++ .|.+||+.+++..
T Consensus 236 ~la~~~~~~g~~~i~~~d~~~~~~~---------~l~~~~~~~~~~~~spdg-~~l~~~s~~~g~~~i~~~d~~~~~~~- 304 (415)
T 2hqs_A 236 KLAFALSKTGSLNLYVMDLASGQIR---------QVTDGRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGAPQ- 304 (415)
T ss_dssp EEEEEECTTSSCEEEEEETTTCCEE---------ECCCCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCCE-
T ss_pred EEEEEEecCCCceEEEEECCCCCEE---------eCcCCCCcccceEECCCC-CEEEEEECCCCCcEEEEEECCCCCEE-
Confidence 888 44 444 5999999865432 445677889999999999 77777775 45 6777788776521
Q ss_pred cccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-C---CeEEEEEeeCCCCCeeeEeeeccccccccccccC
Q 010206 321 THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEN 396 (515)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (515)
. +..+...+.+++|+|+|++|++++ + ..|.+||+.+ ++. ..+..+. .
T Consensus 305 ----~------------l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~-~~~-~~l~~~~-~---------- 355 (415)
T 2hqs_A 305 ----R------------ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-GGV-QVLSSTF-L---------- 355 (415)
T ss_dssp ----E------------CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT-CCE-EECCCSS-S----------
T ss_pred ----E------------EecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC-CCE-EEecCCC-C----------
Confidence 1 122335688999999999998754 2 5899999985 443 3333332 1
Q ss_pred CCccceeeEEEcCCCCEEEEecCCC---cEEEEecCCCCcceeeeccCCCceeeEEECCCC
Q 010206 397 DSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR 454 (515)
Q Consensus 397 ~~~~~v~~~~~s~~~~~l~s~s~dg---~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 454 (515)
+.+++|+|||++|++++.++ .|++||+..+ ....+..|...+..++|+|.-
T Consensus 356 -----~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~--~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 356 -----DETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR--FKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp -----CEEEEECTTSSEEEEEEEETTEEEEEEEETTSC--CEEECCCSSSEEEEEEECCCC
T ss_pred -----cCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC--cEEEeeCCCCCCcCCcccccc
Confidence 44899999999999888777 7999999743 446888999999999999974
No 135
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.92 E-value=1e-22 Score=208.23 Aligned_cols=248 Identities=6% Similarity=-0.020 Sum_probs=161.1
Q ss_pred CCeEEEEecCCCCEEEEeCCCcEEEEeCCC-----CCcccceecccCc-------cccccCCceEEEEEecCCCcEEEEE
Q 010206 235 YHINSISNNSDGETFISADDLRINLWNLEI-----SNQSFNIVDVKPA-------NMEDLTEVITSAEFHPTHCNMLAYS 302 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~-----~~~~~~~~~~~~~-------~~~~~~~~i~~i~~~p~~~~~l~~~ 302 (515)
..+.+++|+|||+.|+++.++.|++||+.+ ++... +...... ..+.+...+.+++|+||| +.|+++
T Consensus 121 ~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~-~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg-~~la~~ 198 (706)
T 2z3z_A 121 EETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIA-VTIDGTETLVYGQAVHQREFGIEKGTFWSPKG-SCLAFY 198 (706)
T ss_dssp TCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEE-SCSCCBTTEEESSCCGGGCTTCCCSEEECTTS-SEEEEE
T ss_pred ccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEE-eccCCCCCeEcccchhhhhcCCCceEEECCCC-CEEEEE
Confidence 345667899999999988789999999986 44321 1100000 000111225889999999 888888
Q ss_pred e---------------------------------cCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 303 S---------------------------------SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 303 ~---------------------------------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
+ .+..|.+||+.+++.... .. ...|...+.+++
T Consensus 199 ~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~----~~----------~~~~~~~~~~~~ 264 (706)
T 2z3z_A 199 RMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYL----QT----------GEPKEKFLTNLS 264 (706)
T ss_dssp EEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEEC----CC----------CSCTTCEEEEEE
T ss_pred EECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEee----cc----------CCCCceeEeeEE
Confidence 7 346799999987753210 00 113446789999
Q ss_pred EccCCCEEEEEc-CC-----eEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcC--CCCEEEEecCCC
Q 010206 350 FARNGRHILSRD-YM-----TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG--DGGRVATGSYSN 421 (515)
Q Consensus 350 ~s~~~~~l~s~~-~~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~s~s~dg 421 (515)
|+|||+.|++++ ++ .|.+||+.+ ++....+....... .+..+..++|+| ||++|++++.|+
T Consensus 265 ~spdg~~l~~~~~~~~~~~~~v~~~d~~~-g~~~~~~~~~~~~~----------~~~~~~~~~~sp~~dg~~l~~~~~~g 333 (706)
T 2z3z_A 265 WSPDENILYVAEVNRAQNECKVNAYDAET-GRFVRTLFVETDKH----------YVEPLHPLTFLPGSNNQFIWQSRRDG 333 (706)
T ss_dssp ECTTSSEEEEEEECTTSCEEEEEEEETTT-CCEEEEEEEEECSS----------CCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred EECCCCEEEEEEeCCCCCeeEEEEEECCC-CceeeEEEEccCCC----------eECccCCceeecCCCCEEEEEEccCC
Confidence 999999888753 23 899999986 53333333221110 000023689999 999999999999
Q ss_pred cEEEEecCCCCcceeeeccCCCceee-EEECCCCCeeEeecC-CC----eEEEecCCCCCccccCCccccccCCeeEEEE
Q 010206 422 LFRVFGCSEGSAESTTLEASKNPMRR-QVQTPSRPSRPLGSL-SG----VVRRVKGADNSALDANGNAFDFSMKLLHLAW 495 (515)
Q Consensus 422 ~i~iw~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~-d~----~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 495 (515)
.+++|.+.........+..+...+.. ++++|+++.|+.++. ++ .+..++..... ...+.+...+.+++|
T Consensus 334 ~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-----~~~l~~~~~~~~~~~ 408 (706)
T 2z3z_A 334 WNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-----TKDLTPESGMHRTQL 408 (706)
T ss_dssp SCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-----CEESCCSSSEEEEEE
T ss_pred ccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-----ceeccCCCceEEEEE
Confidence 99999886333445667777777776 799999998765544 44 34443211110 122235667899999
Q ss_pred cCCCCEEEEEcC-----CcEEEEe
Q 010206 496 HPSENSIACAAS-----NSLYMYY 514 (515)
Q Consensus 496 s~~~~~la~~~~-----~~~~i~~ 514 (515)
||||++|+++.. ..+++|+
T Consensus 409 spdg~~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 409 SPDGSAIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp CTTSSEEEEEEECSSCSCEEEEEE
T ss_pred CCCCCEEEEEecCCCCCcEEEEEE
Confidence 999999986643 2388886
No 136
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=4e-21 Score=177.52 Aligned_cols=288 Identities=9% Similarity=0.098 Sum_probs=181.6
Q ss_pred EEECCCCC-eEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEE
Q 010206 41 IEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (515)
Q Consensus 41 v~~s~~g~-~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~ 119 (515)
..|.++++ .+++++.++.|.+||..+++.. ..+..+. ..+ .++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~-----------------------~~~~~~~------------~~~-~~~ 46 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEIL-----------------------NQITLGY------------DFV-DTA 46 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEE-----------------------EEEECCC------------CEE-EEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCccccee-----------------------eeEEccC------------Ccc-eEE
Confidence 45666555 4777788999999999877642 2222222 446 899
Q ss_pred EeecCCCcEEEeeeC-CCeEEEEEccCCee-EEEeeccCCcccCCCCCCccCCCCcCCC-ceeecCCCccccccccCCCC
Q 010206 120 WCQSANSALYLLSTN-DKTIKLWKVQEKKV-KKVFDWNVHPEKAAGNGPIFGSHVSAIP-KSYMANGGCGERNFGCASND 196 (515)
Q Consensus 120 ~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~g~~l~~~~~~~~~~ 196 (515)
| +++++++++++. ++.|.+||+.+++. .........+ . . ++++|+|+.+
T Consensus 47 ~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~--------~--------~~~~~s~dg~~l---------- 98 (331)
T 3u4y_A 47 I--TSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSS--------M--------ADVDITPDDQFA---------- 98 (331)
T ss_dssp E--CSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSC--------C--------CCEEECTTSSEE----------
T ss_pred E--cCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCC--------c--------cceEECCCCCEE----------
Confidence 9 556776766655 89999999998876 4433332111 1 4 8999999988
Q ss_pred CCCCCCCc-c--cEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCc-EEEEeCCCCCcccc
Q 010206 197 SSFPPGGV-S--SLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLR-INLWNLEISNQSFN 270 (515)
Q Consensus 197 ~~~~~~~~-~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~-i~iwd~~~~~~~~~ 270 (515)
++...+ + .|.+|| +...+ ....+ .....+.+++|+|++++|+++ .++. |.+|++........
T Consensus 99 --~~~~~~~~~~~i~v~d--~~~~~------~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~ 166 (331)
T 3u4y_A 99 --VTVTGLNHPFNMQSYS--FLKNK------FISTI--PIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFD 166 (331)
T ss_dssp --EECCCSSSSCEEEEEE--TTTTE------EEEEE--ECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEE
T ss_pred --EEecCCCCcccEEEEE--CCCCC------eEEEE--ECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEee
Confidence 544444 3 899999 33221 22221 233456899999999866554 5678 99999985443321
Q ss_pred eecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEE
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 350 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (515)
.. .........+..++|+|++..+++++..++.|.+||+.+++... ....+.. ...+..++|
T Consensus 167 ~~----~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~-~~~~~~~-------------~~~~~~~~~ 228 (331)
T 3u4y_A 167 TG----QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT-LLNAVGT-------------NNLPGTIVV 228 (331)
T ss_dssp EE----EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE-EEEEEEC-------------SSCCCCEEE
T ss_pred cC----CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc-eeeeccC-------------CCCCceEEE
Confidence 10 01112345579999999993355555678999999998876411 0111211 145688999
Q ss_pred ccCCCEEEEEc-C-CeEEEEEeeCCCCC--eeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEe-cCCCcEEE
Q 010206 351 ARNGRHILSRD-Y-MTLKLWDINMDSGP--VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRV 425 (515)
Q Consensus 351 s~~~~~l~s~~-~-~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-s~dg~i~i 425 (515)
+|+|++++.+. . +.|.+||+.+ ++. +..+..+-.... ........++|+|||++|+++ ..++.|.+
T Consensus 229 spdg~~l~v~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~spdg~~l~v~~~~~~~v~v 299 (331)
T 3u4y_A 229 SRDGSTVYVLTESTVDVFNFNQLS-GTLSFVKSFGHGLLIDP--------RPLFGANQMALNKTETKLFISANISRELKV 299 (331)
T ss_dssp CTTSSEEEEECSSEEEEEEEETTT-TEEEEEEEEECCCCCCC--------GGGTTCCCEEECTTSSEEEEEETTTTEEEE
T ss_pred CCCCCEEEEEEcCCCEEEEEECCC-CceeeecccccccccCC--------CCcccccceEECCCCCEEEEecCCCCcEEE
Confidence 99999877654 3 8899999985 444 222221100000 111112368999999988654 55679999
Q ss_pred EecCCC
Q 010206 426 FGCSEG 431 (515)
Q Consensus 426 w~~~~~ 431 (515)
||+...
T Consensus 300 ~d~~~~ 305 (331)
T 3u4y_A 300 FTISGK 305 (331)
T ss_dssp EETTSC
T ss_pred EEecCC
Confidence 999854
No 137
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=2.2e-21 Score=180.21 Aligned_cols=237 Identities=14% Similarity=0.125 Sum_probs=143.4
Q ss_pred CeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEe-cCCeEEEEe
Q 010206 236 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLID 312 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg~i~~wd 312 (515)
.+..++|+|+++.|+++ .++.|.+||+..+. ..... ..+. ....+.+++|+|++ +.+++++ .++.|.+||
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~-~~~~~----~~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d 157 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL-PVGVV----DVVE-GLDGCHSANISPDN-RTLWVPALKQDRICLFT 157 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTE-EEEEE----EEEC-CCTTBCCCEECTTS-SEEEEEEGGGTEEEEEE
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCc-ccccc----cccc-CCCCceEEEECCCC-CEEEEecCCCCEEEEEE
Confidence 56789999999988765 58999999995221 11111 0122 23458899999998 6666666 899999999
Q ss_pred cCc-ccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-C-CeEEEEEeeCCCCCeeeEeeecccccc
Q 010206 313 MRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPK 389 (515)
Q Consensus 313 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~ 389 (515)
+.+ ++........+... ....+..++|+|+++++++++ . +.|.+||+......+...........
T Consensus 158 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~- 225 (343)
T 1ri6_A 158 VSDDGHLVAQDPAEVTTV-----------EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPE- 225 (343)
T ss_dssp ECTTSCEEEEEEEEEECS-----------TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCT-
T ss_pred ecCCCceeeecccccccC-----------CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCc-
Confidence 987 43211000011110 113578899999999776643 3 99999999632222221111110000
Q ss_pred ccccccCCCccceeeEEEcCCCCEEE-EecCCCcEEEEecCC--CC-cceeeeccCCCceeeEEECCCCCeeEeec-CCC
Q 010206 390 LCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGCSE--GS-AESTTLEASKNPMRRQVQTPSRPSRPLGS-LSG 464 (515)
Q Consensus 390 ~~~~~~~~~~~~v~~~~~s~~~~~l~-s~s~dg~i~iw~~~~--~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~ 464 (515)
. ......+..++|+|+|++|+ ++..++.|++|++.. +. .....+..+.. +..++++|++++|++++ .++
T Consensus 226 ---~--~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~ 299 (343)
T 1ri6_A 226 ---N--FSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSH 299 (343)
T ss_dssp ---T--CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTC
T ss_pred ---c--ccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCC
Confidence 0 00011234799999999877 555899999999983 22 22234444444 88999999999888777 579
Q ss_pred eEEEe--cC--CCCCccccCCccccccCCeeEEEEcCCCCE
Q 010206 465 VVRRV--KG--ADNSALDANGNAFDFSMKLLHLAWHPSENS 501 (515)
Q Consensus 465 ~v~l~--~~--~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 501 (515)
.+.++ +. .+.. . ...+.......+++|.|+.+.
T Consensus 300 ~v~v~~~d~~~g~~~---~-~~~~~~g~~p~~i~~~~~~~~ 336 (343)
T 1ri6_A 300 HISVYEIVGEQGLLH---E-KGRYAVGQGPMWVVVNAHEGG 336 (343)
T ss_dssp EEEEEEEETTTTEEE---E-EEEEECSSSCCEEEEEEEC--
T ss_pred eEEEEEEcCCCceee---E-ccccccCCCCeeEEEEcccCC
Confidence 99883 21 1111 0 011112345667777776543
No 138
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=1.2e-21 Score=177.93 Aligned_cols=258 Identities=13% Similarity=0.118 Sum_probs=177.8
Q ss_pred eecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEEEeecCCCcEEEe
Q 010206 52 TGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLL 131 (515)
Q Consensus 52 sg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~ 131 (515)
.++.++.|++||+.+++.. .+..|. ..|.+++| ++++++|++
T Consensus 17 ~~~~~~~i~~~d~~~~~~~------------------------~~~~~~------------~~v~~~~~--spdg~~l~~ 58 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR------------------------VVWQTP------------ELFEAPNW--SPDGKYLLL 58 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE------------------------EEEEES------------SCCEEEEE--CTTSSEEEE
T ss_pred CCCcceeEEEEeCCCCcee------------------------eeccCC------------cceEeeEE--CCCCCEEEE
Confidence 4567899999998876532 233344 77999999 556778888
Q ss_pred eeCCCeEEEEEccC-CeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEee
Q 010206 132 STNDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLP 210 (515)
Q Consensus 132 ~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~ 210 (515)
++ ++.|.+||+.+ ++......
T Consensus 59 ~~-~~~i~~~d~~~~~~~~~~~~--------------------------------------------------------- 80 (297)
T 2ojh_A 59 NS-EGLLYRLSLAGDPSPEKVDT--------------------------------------------------------- 80 (297)
T ss_dssp EE-TTEEEEEESSSCCSCEECCC---------------------------------------------------------
T ss_pred Ec-CCeEEEEeCCCCCCceEecc---------------------------------------------------------
Confidence 76 78999999987 64322110
Q ss_pred eeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-C--CCcEEEEeCCCCCcccceecccCccccccCCceE
Q 010206 211 VVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT 287 (515)
Q Consensus 211 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 287 (515)
..+...+.+++|+|++++|+++ . ++...+|.++....... .+.. ...+.
T Consensus 81 --------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~-------~~~~-~~~~~ 132 (297)
T 2ojh_A 81 --------------------GFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPR-------LMTK-NLPSY 132 (297)
T ss_dssp --------------------TTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCE-------ECCS-SSSEE
T ss_pred --------------------ccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceE-------Eeec-CCCcc
Confidence 1122557788999999999886 2 34555555432221111 2222 33488
Q ss_pred EEEEecCCCcEEE-EEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc--CCe
Q 010206 288 SAEFHPTHCNMLA-YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMT 364 (515)
Q Consensus 288 ~i~~~p~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~~~ 364 (515)
.++|+|++ +.|+ ++..++.+++|++...... .. .+..+...+.++.|+|++++|+.++ ++.
T Consensus 133 ~~~~spdg-~~l~~~~~~~~~~~l~~~~~~~~~---~~------------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 196 (297)
T 2ojh_A 133 WHGWSPDG-KSFTYCGIRDQVFDIYSMDIDSGV---ET------------RLTHGEGRNDGPDYSPDGRWIYFNSSRTGQ 196 (297)
T ss_dssp EEEECTTS-SEEEEEEEETTEEEEEEEETTTCC---EE------------ECCCSSSCEEEEEECTTSSEEEEEECTTSS
T ss_pred ceEECCCC-CEEEEEECCCCceEEEEEECCCCc---ce------------EcccCCCccccceECCCCCEEEEEecCCCC
Confidence 99999999 5555 7888999999986432110 01 1233446789999999999888643 489
Q ss_pred EEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCC-----------CcEEEEecCCCCc
Q 010206 365 LKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-----------NLFRVFGCSEGSA 433 (515)
Q Consensus 365 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d-----------g~i~iw~~~~~~~ 433 (515)
+++|++.........+..+... +..++|+|+|++|++++.+ +.|++||+.+++.
T Consensus 197 ~~i~~~~~~~~~~~~~~~~~~~---------------~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 197 MQIWRVRVDGSSVERITDSAYG---------------DWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp CEEEEEETTSSCEEECCCCSEE---------------EEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred ccEEEECCCCCCcEEEecCCcc---------------cCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 9999998545555555544322 4589999999999988765 5699999987743
Q ss_pred c-eeeeccCCCceeeEEECCCCCeeEeecCCC
Q 010206 434 E-STTLEASKNPMRRQVQTPSRPSRPLGSLSG 464 (515)
Q Consensus 434 ~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 464 (515)
. +..+..|...+..+.|+|++++|++++.+.
T Consensus 262 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 262 ETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred eeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 3 234557888999999999999998886653
No 139
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=3.3e-21 Score=179.81 Aligned_cols=283 Identities=8% Similarity=0.031 Sum_probs=196.1
Q ss_pred ccccceEEEEECCCCCeEEeecC-------CCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccc
Q 010206 33 QEVDIISAIEFDKSGDHLATGDR-------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY 105 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~lasg~~-------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 105 (515)
.....+..++|+|+|++|++++. ++.|.+||..+++.. ..+...
T Consensus 38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~-----------------------~~~~~~------ 88 (353)
T 3vgz_A 38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVT-----------------------QAIHND------ 88 (353)
T ss_dssp EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEE-----------------------EEEEES------
T ss_pred hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEE-----------------------EEEecC------
Confidence 44567889999999998888763 568999998876632 112211
Q ss_pred cccccccceeEEEEEeecCCCcEEEe-eeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCC
Q 010206 106 LKSLEIEEKINKIRWCQSANSALYLL-STNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (515)
Q Consensus 106 ~~~~~~~~~v~~l~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~ 184 (515)
..+..++|+ ++++++++ ...++.|.+||..+++...........
T Consensus 89 -------~~~~~~~~s--~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~-------------------------- 133 (353)
T 3vgz_A 89 -------LKPFGATIN--NTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRK-------------------------- 133 (353)
T ss_dssp -------SCCCSEEEE--TTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCC--------------------------
T ss_pred -------CCcceEEEC--CCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCc--------------------------
Confidence 346778884 55665555 455799999999988765543321000
Q ss_pred ccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe---CCCcEEEEe
Q 010206 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA---DDLRINLWN 261 (515)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~---~d~~i~iwd 261 (515)
.. .......+.+++|+|+++.++++ .++.|.+||
T Consensus 134 -------------------------------~~------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d 170 (353)
T 3vgz_A 134 -------------------------------RT------------EEVRPLQPRELVADDATNTVYISGIGKESVIWVVD 170 (353)
T ss_dssp -------------------------------CC------------SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEE
T ss_pred -------------------------------cc------------cccCCCCCceEEECCCCCEEEEEecCCCceEEEEc
Confidence 00 00111236789999999977765 378999999
Q ss_pred CCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccc
Q 010206 262 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 341 (515)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (515)
+.+.+... .+..+...+.+++|+|++ +.+++++.++.|.+||+.+++.... +.... .++
T Consensus 171 ~~~~~~~~--------~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~~~~~~----~~~~~--------~~~ 229 (353)
T 3vgz_A 171 GGNIKLKT--------AIQNTGKMSTGLALDSEG-KRLYTTNADGELITIDTADNKILSR----KKLLD--------DGK 229 (353)
T ss_dssp TTTTEEEE--------EECCCCTTCCCCEEETTT-TEEEEECTTSEEEEEETTTTEEEEE----EECCC--------SSS
T ss_pred CCCCceEE--------EecCCCCccceEEECCCC-CEEEEEcCCCeEEEEECCCCeEEEE----EEcCC--------CCC
Confidence 98765432 222244557889999999 8888889999999999988765321 11110 112
Q ss_pred ccceeEEEEccCCCEEEEEc-C-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEE-ec
Q 010206 342 IASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT-GS 418 (515)
Q Consensus 342 ~~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s-~s 418 (515)
...+..++|+|++++++.++ . +.|.+||+.+ ++.+..+..... ..++|+|+|++++. ..
T Consensus 230 ~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~~~~-----------------~~~~~s~dg~~l~v~~~ 291 (353)
T 3vgz_A 230 EHFFINISLDTARQRAFITDSKAAEVLVVDTRN-GNILAKVAAPES-----------------LAVLFNPARNEAYVTHR 291 (353)
T ss_dssp CCCEEEEEEETTTTEEEEEESSSSEEEEEETTT-CCEEEEEECSSC-----------------CCEEEETTTTEEEEEET
T ss_pred CcccceEEECCCCCEEEEEeCCCCEEEEEECCC-CcEEEEEEcCCC-----------------ceEEECCCCCEEEEEEC
Confidence 34678899999999887754 4 8999999986 666666654332 17899999996554 45
Q ss_pred CCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCC
Q 010206 419 YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS 463 (515)
Q Consensus 419 ~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 463 (515)
.++.|.+||+.++ .....+... ..+..++++|++++|+.+..+
T Consensus 292 ~~~~v~~~d~~~~-~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 292 QAGKVSVIDAKSY-KVVKTFDTP-THPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp TTTEEEEEETTTT-EEEEEEECC-SEEEEEEECTTSCEEEEEEEC
T ss_pred CCCeEEEEECCCC-eEEEEEecC-CCCCeEEEcCCCCEEEEEEcc
Confidence 7899999999887 444455443 367899999999977666544
No 140
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=6.4e-22 Score=179.64 Aligned_cols=232 Identities=13% Similarity=0.082 Sum_probs=163.0
Q ss_pred cCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCC-CCcccceecccCcccccc-CCceEEEEEecCCCcEEEEEe--cCCe
Q 010206 232 AHDYHINSISNNSDGETFISADDLRINLWNLEI-SNQSFNIVDVKPANMEDL-TEVITSAEFHPTHCNMLAYSS--SKGS 307 (515)
Q Consensus 232 ~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~-~~~i~~i~~~p~~~~~l~~~~--~dg~ 307 (515)
.|...|.+++|+|++++|+++.++.|++||+.+ ++... ....+ ...+.+++|+|++ +.|++++ .++.
T Consensus 39 ~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~--------~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~ 109 (297)
T 2ojh_A 39 QTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEK--------VDTGFATICNNDHGISPDG-ALYAISDKVEFGK 109 (297)
T ss_dssp EESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEE--------CCCTTCCCBCSCCEECTTS-SEEEEEECTTTSS
T ss_pred cCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceE--------eccccccccccceEECCCC-CEEEEEEeCCCCc
Confidence 466789999999999999998888999999987 54321 12223 4678899999999 8888888 3345
Q ss_pred EEEEec--CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEE-EEc-CCeEEEEEeeCCCCCeeeEeee
Q 010206 308 IRLIDM--RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL-SRD-YMTLKLWDINMDSGPVATFQVH 383 (515)
Q Consensus 308 i~~wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-s~~-~~~i~iwd~~~~~~~~~~~~~~ 383 (515)
.++|.+ .++.. ..+ ..+ ..+..++|+|++++|+ ++. ++.++||++.........+..+
T Consensus 110 ~~l~~~~~~~~~~-----~~~------------~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 171 (297)
T 2ojh_A 110 SAIYLLPSTGGTP-----RLM------------TKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHG 171 (297)
T ss_dssp CEEEEEETTCCCC-----EEC------------CSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCS
T ss_pred ceEEEEECCCCce-----EEe------------ecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccC
Confidence 555554 43321 111 111 2488899999999887 454 4899999987534444444433
Q ss_pred ccccccccccccCCCccceeeEEEcCCCCEEEEec-CCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecC
Q 010206 384 EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL 462 (515)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s-~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 462 (515)
... +..++|+|++++|+.++ .++.+++|++.........+..|...+..+.|+|++++|++++.
T Consensus 172 ~~~---------------~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 236 (297)
T 2ojh_A 172 EGR---------------NDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSY 236 (297)
T ss_dssp SSC---------------EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEE
T ss_pred CCc---------------cccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEc
Confidence 322 45899999999887665 58999999987433455677788888999999999999988887
Q ss_pred C-----------CeEEEec--CCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCC
Q 010206 463 S-----------GVVRRVK--GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASN 508 (515)
Q Consensus 463 d-----------~~v~l~~--~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~ 508 (515)
+ +.+.+++ +.+.. .......+...+..++|+||+++|++++.+
T Consensus 237 ~~~~~~~~~~~~~~l~~~d~~~~~~~---~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 237 DADVFDHPRDLDVRVQLMDMDGGNVE---TLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp ETTCCSCCSSEEEEEEEEETTSCSCE---EEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred CCCCCcccccCceEEEEEecCCCCce---eeeccCCCCcccccceECCCCCEEEEEEec
Confidence 6 3466533 22211 111122456789999999999999977643
No 141
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.90 E-value=1.9e-21 Score=200.16 Aligned_cols=306 Identities=8% Similarity=-0.015 Sum_probs=193.9
Q ss_pred ceeEEEEEeecCCCcEEEeeeC-CC-----eEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcc
Q 010206 113 EKINKIRWCQSANSALYLLSTN-DK-----TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~-d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l 186 (515)
..+.+++| ++||++|++++. |+ .|++||+.+++.......... .|+|+.+
T Consensus 37 ~~~~~~~~--SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~----------------------~~~~~~~ 92 (741)
T 2ecf_A 37 PTLMKPKV--APDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVV----------------------LPGTETL 92 (741)
T ss_dssp CCCEEEEE--CTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGT----------------------C------
T ss_pred CCCCCceE--ecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhc----------------------ccccccc
Confidence 56999999 667889999988 88 999999999886665543311 0223222
Q ss_pred ccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCC
Q 010206 187 ERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISN 266 (515)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~ 266 (515)
.. +.... ..... ......+.+++|+|||++|+++.++.|++||+.++.
T Consensus 93 ------------~~-----------------~~~~~-~~~~~--~~~~~~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~ 140 (741)
T 2ecf_A 93 ------------SD-----------------EEKAR-RERQR--IAAMTGIVDYQWSPDAQRLLFPLGGELYLYDLKQEG 140 (741)
T ss_dssp ----------------------------------------------CCEESCCCEECTTSSEEEEEETTEEEEEESSSCS
T ss_pred ------------cc-----------------hhhhh-hhhhh--hccccCcceeEECCCCCEEEEEeCCcEEEEECCCCC
Confidence 00 00000 00000 011234778999999999999866999999998762
Q ss_pred --cccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccc----
Q 010206 267 --QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE---- 340 (515)
Q Consensus 267 --~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 340 (515)
... .+..|...+.+++|+||| +.|++++ ++.|++||+.+++.... ..... .....+
T Consensus 141 ~~~~~--------~l~~~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d~~~g~~~~~----~~~~~----~~~~~g~~~~ 202 (741)
T 2ecf_A 141 KAAVR--------QLTHGEGFATDAKLSPKG-GFVSFIR-GRNLWVIDLASGRQMQL----TADGS----TTIGNGIAEF 202 (741)
T ss_dssp TTSCC--------BCCCSSSCEEEEEECTTS-SEEEEEE-TTEEEEEETTTTEEEEC----CCCCC----SSEEESCCCH
T ss_pred cceEE--------EcccCCcccccccCCCCC-CEEEEEe-CCcEEEEecCCCCEEEe----ccCCc----cceeccccce
Confidence 221 445577889999999999 8888776 56999999988654211 00000 000000
Q ss_pred ----cccceeEEEEccCCCEEEEEc-CC---------------------------------eEEEEEeeCCCCCeeeEee
Q 010206 341 ----IIASISDIKFARNGRHILSRD-YM---------------------------------TLKLWDINMDSGPVATFQV 382 (515)
Q Consensus 341 ----~~~~i~~~~~s~~~~~l~s~~-~~---------------------------------~i~iwd~~~~~~~~~~~~~ 382 (515)
....+..+.|||||++|++++ ++ .|.+||+.+.++.......
T Consensus 203 v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 282 (741)
T 2ecf_A 203 VADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLG 282 (741)
T ss_dssp HHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCC
T ss_pred eeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCC
Confidence 012257899999999998864 23 7788887630222222111
Q ss_pred --eccccccccccccCCCccceeeEEEcCCCCEEEEecC-----CCcEEEEecCCCCcceeeeccCCC----ceeeEEEC
Q 010206 383 --HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-----SNLFRVFGCSEGSAESTTLEASKN----PMRRQVQT 451 (515)
Q Consensus 383 --~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~-----dg~i~iw~~~~~~~~~~~~~~~~~----~v~~~~~~ 451 (515)
+.. .+..++| |||++|++++. +..|++||+.+++. ...+..+.. .+..++|+
T Consensus 283 ~~~~~---------------~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 283 KEQDI---------------YLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ-RVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp SCSSE---------------EEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE-EEEEEEECSSCCCCCSCCEEC
T ss_pred CCcce---------------EEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce-EEEEEcCCCCcCCcCCceEEC
Confidence 111 1458999 99999986653 67899999998743 344444433 45689999
Q ss_pred CCCCeeEeecCCCeEEE--ecCCCCCccccCCccccccCCeeEE-EEcCCCCEEEE-EcCC---cEEEEe
Q 010206 452 PSRPSRPLGSLSGVVRR--VKGADNSALDANGNAFDFSMKLLHL-AWHPSENSIAC-AASN---SLYMYY 514 (515)
Q Consensus 452 ~~~~~l~s~~~d~~v~l--~~~~~~~~~~~~~~~~~~~~~i~~~-~~s~~~~~la~-~~~~---~~~i~~ 514 (515)
|+++++++++.|+.++| ++... . ......+...|..+ +|+||++.|++ ++.+ .+.||.
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~~~~----~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRIDSKG----K-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEECSSS----C-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred CCCeEEEEecCCCccEEEEEcCCC----C-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 99999999999997777 22110 0 11223356678787 59999998874 4444 466774
No 142
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.89 E-value=9.2e-22 Score=201.61 Aligned_cols=329 Identities=11% Similarity=0.021 Sum_probs=197.8
Q ss_pred EEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEE
Q 010206 40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (515)
Q Consensus 40 ~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~ 119 (515)
.++|+|||++++++ .|+.|++||+.+++.. ..+..|.. . ...+.+++
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~-----------------------~~~~~~~~-----~----~~~~~~~~ 66 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSY-----------------------TILSNRTM-----K----SVNASNYG 66 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEE-----------------------EEECHHHH-----H----TTTCSEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEE-----------------------EEEccccc-----c----ccceeeEE
Confidence 78999999766655 5999999999877632 12222210 0 01388999
Q ss_pred EeecCCCcEEEeeeC---------CCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 120 WCQSANSALYLLSTN---------DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 120 ~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
| ++||++|++++. ++.|++||+.+++......
T Consensus 67 ~--SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~------------------------------------- 107 (719)
T 1z68_A 67 L--SPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE------------------------------------- 107 (719)
T ss_dssp E--CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-------------------------------------
T ss_pred E--CCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee-------------------------------------
Confidence 9 567889998876 6889999988876311000
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFN 270 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~ 270 (515)
+ ...+..++|+|||+.|+.+.++.|++||+.+++....
T Consensus 108 ---------------------------------------l---~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l 145 (719)
T 1z68_A 108 ---------------------------------------L---PRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQI 145 (719)
T ss_dssp ---------------------------------------C---CSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEEC
T ss_pred ---------------------------------------c---CcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEE
Confidence 0 1346678999999999998788999999986654211
Q ss_pred eecccC-ccccccCC---------ceEEEEEecCCCcEEEEEecCC----------------------------------
Q 010206 271 IVDVKP-ANMEDLTE---------VITSAEFHPTHCNMLAYSSSKG---------------------------------- 306 (515)
Q Consensus 271 ~~~~~~-~~~~~~~~---------~i~~i~~~p~~~~~l~~~~~dg---------------------------------- 306 (515)
...... ..+.++.. ...+++|+||| +.|++++.|.
T Consensus 146 ~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~ 224 (719)
T 1z68_A 146 TFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVV 224 (719)
T ss_dssp CCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEE
T ss_pred ecCCCcCCeEcccccceeeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCee
Confidence 000000 00111211 12489999999 8888887652
Q ss_pred eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-----CeEEEEE----eeCCCCCe
Q 010206 307 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-----MTLKLWD----INMDSGPV 377 (515)
Q Consensus 307 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-----~~i~iwd----~~~~~~~~ 377 (515)
.|++||+.+++.... . .+.. ...+.+|...+..++||||++++++..+ ..|.+|| +.+ ++..
T Consensus 225 ~l~~~d~~~~~~~~~-~-~~~~------~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~-g~~~ 295 (719)
T 1z68_A 225 RIFIIDTTYPAYVGP-Q-EVPV------PAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT-WDCP 295 (719)
T ss_dssp EEEEEESSCHHHHCC-E-ECCC------CHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS-EECC
T ss_pred EEEEEECCCCCccce-e-EccC------CccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC-CceE
Confidence 788899887653100 0 0000 0113456678999999999887777432 3588888 554 3333
Q ss_pred eeE----eeeccccccccccccCCCccceeeEEEcCCCCEEEE--ecCCC--cEEEEecCCCCcceeeeccCCCceeeEE
Q 010206 378 ATF----QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT--GSYSN--LFRVFGCSEGSAESTTLEASKNPMRRQV 449 (515)
Q Consensus 378 ~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s--~s~dg--~i~iw~~~~~~~~~~~~~~~~~~v~~~~ 449 (515)
..+ ..+...... .....+.|+|||+.|+. ...+| .|++|++.++. ...+..+...+..+.
T Consensus 296 ~~~~~~~~~~~~~~~~----------~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~--~~~lt~~~~~v~~~~ 363 (719)
T 1z68_A 296 KTQEHIEESRTGWAGG----------FFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN--AIQITSGKWEAINIF 363 (719)
T ss_dssp GGGEEEEECSSSCSSS----------SSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT--CEECSCSSSCEEEEE
T ss_pred EEEecccccCCceEcc----------ccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc--eEecccCceEEEEEE
Confidence 333 223222100 00015789999996553 44555 56777877653 345555556677777
Q ss_pred ECCCCCeeEeecCC-----CeEEE--ec--CCCCCccccCCccccccCCeeEEEEcCCCCEEEEE
Q 010206 450 QTPSRPSRPLGSLS-----GVVRR--VK--GADNSALDANGNAFDFSMKLLHLAWHPSENSIACA 505 (515)
Q Consensus 450 ~~~~~~~l~s~~~d-----~~v~l--~~--~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~ 505 (515)
+. +++.++..+.+ +..++ ++ +.......+.....++...+..++|+||+++++..
T Consensus 364 ~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~ 427 (719)
T 1z68_A 364 RV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALV 427 (719)
T ss_dssp EE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEE
T ss_pred EE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEE
Confidence 67 77766555544 66666 22 12110001111111245678899999999988854
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.89 E-value=3.2e-20 Score=172.37 Aligned_cols=283 Identities=11% Similarity=0.108 Sum_probs=173.8
Q ss_pred ccccccceEEEEECCCCCeEEeecCC-CeEEEEEcc--cCcccCccccCcccccccccCCccceeeeecccCCCcccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRG-GRVVLFERT--DTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~d-g~v~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (515)
...|...+.+++|+|+|++|++++.+ +.|.+|++. +++.. ....+..+
T Consensus 33 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~---------------------~~~~~~~~-------- 83 (343)
T 1ri6_A 33 VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT---------------------FAAESALP-------- 83 (343)
T ss_dssp EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE---------------------EEEEEECS--------
T ss_pred eEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCcee---------------------eccccccC--------
Confidence 45677889999999999988888876 899999987 33311 11222221
Q ss_pred cccccceeEEEEEeecCCCcEEEeeeC-CCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcc
Q 010206 108 SLEIEEKINKIRWCQSANSALYLLSTN-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (515)
Q Consensus 108 ~~~~~~~v~~l~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l 186 (515)
..+..++| +++++++++++. ++.|.+||+..+.......
T Consensus 84 -----~~~~~~~~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~--------------------------------- 123 (343)
T 1ri6_A 84 -----GSLTHIST--DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVD--------------------------------- 123 (343)
T ss_dssp -----SCCSEEEE--CTTSSEEEEEETTTTEEEEEEEETTEEEEEEE---------------------------------
T ss_pred -----CCCcEEEE--cCCCCEEEEEecCCCeEEEEECCCCccccccc---------------------------------
Confidence 35788999 556777777654 8899999986332111100
Q ss_pred ccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCC
Q 010206 187 ERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEI 264 (515)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~ 264 (515)
. . .....+.+++|+|+++.|+++ .++.|.+||+.+
T Consensus 124 -----------------------------------------~-~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 160 (343)
T 1ri6_A 124 -----------------------------------------V-V-EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSD 160 (343)
T ss_dssp -----------------------------------------E-E-CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred -----------------------------------------c-c-cCCCCceEEEECCCCCEEEEecCCCCEEEEEEecC
Confidence 0 0 111346788999999977765 699999999986
Q ss_pred CCcccceecccCccccccCCceEEEEEecCCCcEE-EEEecCCeEEEEecCc--ccccccccceeeeccCCCcccccccc
Q 010206 265 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML-AYSSSKGSIRLIDMRQ--SALCDTHSKLFEEQEAPGTRSFFTEI 341 (515)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l-~~~~~dg~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (515)
.......... . ........+..++|+|++ +.+ +++..++.|.+||+.. +... .......... -...
T Consensus 161 ~~~~~~~~~~-~-~~~~~~~~~~~~~~~pdg-~~l~~~~~~~~~i~~~~~~~~~g~~~--~~~~~~~~~~------~~~~ 229 (343)
T 1ri6_A 161 DGHLVAQDPA-E-VTTVEGAGPRHMVFHPNE-QYAYCVNELNSSVDVWELKDPHGNIE--CVQTLDMMPE------NFSD 229 (343)
T ss_dssp TSCEEEEEEE-E-EECSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEESSCTTSCCE--EEEEEECSCT------TCCS
T ss_pred CCceeeeccc-c-cccCCCCCcceEEECCCC-CEEEEEeCCCCEEEEEEecCCCCcEE--EEeeccccCc------cccc
Confidence 3322111000 0 011123568899999999 655 4555899999999954 3211 0111110000 0011
Q ss_pred ccceeEEEEccCCCEEEE-Ec-CCeEEEEEeeCCCCCe---eeEeeeccccccccccccCCCccceeeEEEcCCCCEEEE
Q 010206 342 IASISDIKFARNGRHILS-RD-YMTLKLWDINMDSGPV---ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT 416 (515)
Q Consensus 342 ~~~i~~~~~s~~~~~l~s-~~-~~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 416 (515)
...+..++|+|+|++|++ +. ++.|.+||+....... ..+..+.. +..++|+|+|++|++
T Consensus 230 ~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~----------------~~~~~~s~dg~~l~~ 293 (343)
T 1ri6_A 230 TRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ----------------PRGFNVDHSGKYLIA 293 (343)
T ss_dssp CCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS----------------CCCEEECTTSSEEEE
T ss_pred cCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc----------------cceEEECCCCCEEEE
Confidence 235678999999998875 43 4999999998322222 22222111 238999999998887
Q ss_pred ec-CCCcEEEEecC--CCCcc-eeeeccCCCceeeEEECCC
Q 010206 417 GS-YSNLFRVFGCS--EGSAE-STTLEASKNPMRRQVQTPS 453 (515)
Q Consensus 417 ~s-~dg~i~iw~~~--~~~~~-~~~~~~~~~~v~~~~~~~~ 453 (515)
++ .++.|.+|++. ++... +..+... .....+++.|+
T Consensus 294 ~~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~ 333 (343)
T 1ri6_A 294 AGQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNAH 333 (343)
T ss_dssp ECTTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEEE
T ss_pred ecCCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEcc
Confidence 77 68999999554 44211 2233332 33446666554
No 144
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.88 E-value=9.6e-21 Score=193.69 Aligned_cols=307 Identities=12% Similarity=0.054 Sum_probs=186.0
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccccee
Q 010206 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (515)
Q Consensus 36 ~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (515)
..|.+++|||| +.++.+ .++.|++||+.+++.. .+..+. ..+
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~------------------------~l~~~~------------~~~ 123 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVT------------------------YLFDTN------------EET 123 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEE------------------------EEECCT------------TCC
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceE------------------------EccCCc------------ccc
Confidence 57999999999 555555 3589999999776531 122233 557
Q ss_pred EEEEEeecCCCcEEEeeeCCCeEEEEEccC-----CeeEEEeeccCCcccCCCCCC-ccC-CCCcCCCceeecCCCcccc
Q 010206 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQE-----KKVKKVFDWNVHPEKAAGNGP-IFG-SHVSAIPKSYMANGGCGER 188 (515)
Q Consensus 116 ~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~-v~~-~~~~~~~~~~~~~g~~l~~ 188 (515)
.+++| +++|+.|+++ .|+.|++|++.+ ++............ ..+. +.. .......+.|+|||+.|..
T Consensus 124 ~~~~~--SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~---~~g~~~~~ee~~~~~~~~~SpDg~~la~ 197 (706)
T 2z3z_A 124 ASLDF--SPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETL---VYGQAVHQREFGIEKGTFWSPKGSCLAF 197 (706)
T ss_dssp TTCEE--CTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTE---EESSCCGGGCTTCCCSEEECTTSSEEEE
T ss_pred cCCcC--CCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCe---EcccchhhhhcCCCceEEECCCCCEEEE
Confidence 88999 5677788884 689999999998 76554332221100 0000 000 0001127899999998843
Q ss_pred ccccCCC-------------------CCCC--CCCCcccEEeeeeeecccccccccceeeeee-ccCcCCeEEEEecCCC
Q 010206 189 NFGCASN-------------------DSSF--PPGGVSSLRLPVVVVTSQETNLVAGCRRIYA-HAHDYHINSISNNSDG 246 (515)
Q Consensus 189 ~~~~~~~-------------------~~~~--~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~ 246 (515)
....... .+-. ....+..|.+|| +...+ ...... ..|...+.+++|+||+
T Consensus 198 ~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d--~~~~~------~~~~~~~~~~~~~~~~~~~spdg 269 (706)
T 2z3z_A 198 YRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYH--LATGK------TVYLQTGEPKEKFLTNLSWSPDE 269 (706)
T ss_dssp EEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEE--TTTTE------EEECCCCSCTTCEEEEEEECTTS
T ss_pred EEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEE--CCCCc------eEeeccCCCCceeEeeEEEECCC
Confidence 2210000 0000 012456788888 33221 111111 2566789999999999
Q ss_pred CEEEEe-CCC-----cEEEEeCCCCCcccceecccCccccccCCceEEEEEec--CCCcEEEEEecCCeEEEEecC-ccc
Q 010206 247 ETFISA-DDL-----RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP--THCNMLAYSSSKGSIRLIDMR-QSA 317 (515)
Q Consensus 247 ~~l~s~-~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p--~~~~~l~~~~~dg~i~~wd~~-~~~ 317 (515)
+.|+++ .++ .|++||+.+++....+... ........+.+++|+| ++ ++++++..++.+++|++. ++.
T Consensus 270 ~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~---~~~~~~~~~~~~~~sp~~dg-~~l~~~~~~g~~~l~~~~~~~~ 345 (706)
T 2z3z_A 270 NILYVAEVNRAQNECKVNAYDAETGRFVRTLFVE---TDKHYVEPLHPLTFLPGSNN-QFIWQSRRDGWNHLYLYDTTGR 345 (706)
T ss_dssp SEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEE---ECSSCCCCCSCCEECTTCSS-EEEEEECTTSSCEEEEEETTSC
T ss_pred CEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEc---cCCCeECccCCceeecCCCC-EEEEEEccCCccEEEEEECCCC
Confidence 998886 444 8999999876333222100 0001112346789999 98 799999999999999876 332
Q ss_pred ccccccceeeeccCCCccccccccccceeE-EEEccCCCEEEEE-cC-C----eEEEEEeeCCCCCeeeEeeeccccccc
Q 010206 318 LCDTHSKLFEEQEAPGTRSFFTEIIASISD-IKFARNGRHILSR-DY-M----TLKLWDINMDSGPVATFQVHEHLRPKL 390 (515)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~s~-~~-~----~i~iwd~~~~~~~~~~~~~~~~~~~~~ 390 (515)
.. .. +..|...+.. ++|+|+|+.|+.+ .+ + .|..||+.. ++ ...+. +...
T Consensus 346 ~~----~~------------l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-~~-~~~l~-~~~~---- 402 (706)
T 2z3z_A 346 LI----RQ------------VTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG-GK-TKDLT-PESG---- 402 (706)
T ss_dssp EE----EE------------CCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC-CC-CEESC-CSSS----
T ss_pred EE----Ee------------cCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC-CC-ceecc-CCCc----
Confidence 21 11 2334456766 7999999988764 33 4 455555543 22 33332 2211
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEecCC----CcEEEEecCCCC
Q 010206 391 CDLYENDSIFDKFECCLSGDGGRVATGSYS----NLFRVFGCSEGS 432 (515)
Q Consensus 391 ~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d----g~i~iw~~~~~~ 432 (515)
+.+++|+|||++|+....+ +.|++||+.+++
T Consensus 403 -----------~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 403 -----------MHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp -----------EEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred -----------eEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 4589999999988866433 569999998764
No 145
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=8.6e-20 Score=168.58 Aligned_cols=272 Identities=7% Similarity=0.034 Sum_probs=177.3
Q ss_pred CcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcc
Q 010206 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (515)
Q Consensus 126 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 205 (515)
+..+++.+.++.|.+||+.+++........... + .++++|+|+.+ +++...++
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~---------------~-~~~~s~dg~~l-----------~~~~~~~~ 62 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQITLGYDF---------------V-DTAITSDCSNV-----------VVTSDFCQ 62 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEECCCCE---------------E-EEEECSSSCEE-----------EEEESTTC
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEEccCCc---------------c-eEEEcCCCCEE-----------EEEeCCCC
Confidence 345777788999999999999876665533111 1 67899999966 13344478
Q ss_pred cEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CC-C--cEEEEeCCCCCcccceecccCccccc
Q 010206 206 SLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD-L--RINLWNLEISNQSFNIVDVKPANMED 281 (515)
Q Consensus 206 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~ 281 (515)
.|.+|| ....+. .... ...+.....+++|+|++++|+++ .+ + .|.+||+.+.+.... +.
T Consensus 63 ~i~~~d--~~~~~~-----~~~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~--------~~- 125 (331)
T 3u4y_A 63 TLVQIE--TQLEPP-----KVVA-IQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIST--------IP- 125 (331)
T ss_dssp EEEEEE--CSSSSC-----EEEE-EEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEE--------EE-
T ss_pred eEEEEE--CCCCce-----eEEe-cccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEE--------EE-
Confidence 999998 333221 0112 23444555459999999999966 44 3 999999987654321 12
Q ss_pred cCCceEEEEEecCCCcEEEEEecCCe-EEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEE
Q 010206 282 LTEVITSAEFHPTHCNMLAYSSSKGS-IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 360 (515)
Q Consensus 282 ~~~~i~~i~~~p~~~~~l~~~~~dg~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 360 (515)
....+.+++|+|++..+++++..++. |.+|++.......... ... + ........++|+|+|++++.+
T Consensus 126 ~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~--~~~---------~-~~~~~~~~~~~spdg~~l~v~ 193 (331)
T 3u4y_A 126 IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG--QEF---------I-SGGTRPFNITFTPDGNFAFVA 193 (331)
T ss_dssp CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE--EEE---------E-CSSSSEEEEEECTTSSEEEEE
T ss_pred CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC--Ccc---------c-cCCCCccceEECCCCCEEEEE
Confidence 23456899999999445555566688 9999987543211100 000 0 112357899999999977654
Q ss_pred -cC-CeEEEEEeeCCCCC---eeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEe-cCCCcEEEEecCCCCcc
Q 010206 361 -DY-MTLKLWDINMDSGP---VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 361 -~~-~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-s~dg~i~iw~~~~~~~~ 434 (515)
.. +.|.+||+.+ ++. +..+..... +..++|+|||++|+.+ ..++.|.+||+.+++..
T Consensus 194 ~~~~~~v~v~d~~~-~~~~~~~~~~~~~~~----------------~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~ 256 (331)
T 3u4y_A 194 NLIGNSIGILETQN-PENITLLNAVGTNNL----------------PGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLS 256 (331)
T ss_dssp ETTTTEEEEEECSS-TTSCEEEEEEECSSC----------------CCCEEECTTSSEEEEECSSEEEEEEEETTTTEEE
T ss_pred eCCCCeEEEEECCC-CcccceeeeccCCCC----------------CceEEECCCCCEEEEEEcCCCEEEEEECCCCcee
Confidence 33 8999999986 666 555543221 2379999999977655 46789999999887431
Q ss_pred -eeeeccC----CCce---eeEEECCCCCeeEee-cCCCeEEEec
Q 010206 435 -STTLEAS----KNPM---RRQVQTPSRPSRPLG-SLSGVVRRVK 470 (515)
Q Consensus 435 -~~~~~~~----~~~v---~~~~~~~~~~~l~s~-~~d~~v~l~~ 470 (515)
...+..+ ..+. ..++++|++++|+.+ ..++.+.+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d 301 (331)
T 3u4y_A 257 FVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT 301 (331)
T ss_dssp EEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred eecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence 1222221 2222 458999999987555 4567898833
No 146
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.87 E-value=1.5e-20 Score=192.82 Aligned_cols=288 Identities=9% Similarity=0.047 Sum_probs=179.0
Q ss_pred CceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcC---CeEEEEecCCCCEEEEe
Q 010206 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDY---HINSISNNSDGETFISA 252 (515)
Q Consensus 176 ~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~s~ 252 (515)
.++|+|||+.+ ++ +.++.|++|| ..+.+ .... +..|.. .|.+++|+|||++|+++
T Consensus 21 ~~~~spdg~~~------------~~-~~dg~i~~~d--~~~g~------~~~~-~~~~~~~~~~v~~~~~SpDg~~l~~~ 78 (723)
T 1xfd_A 21 EAKWISDTEFI------------YR-EQKGTVRLWN--VETNT------STVL-IEGKKIESLRAIRYEISPDREYALFS 78 (723)
T ss_dssp CCCBSSSSCBC------------CC-CSSSCEEEBC--GGGCC------CEEE-ECTTTTTTTTCSEEEECTTSSEEEEE
T ss_pred ccEEcCCCcEE------------EE-eCCCCEEEEE--CCCCc------EEEE-eccccccccccceEEECCCCCEEEEE
Confidence 78999999965 55 6889999999 43322 2222 344443 48999999999999987
Q ss_pred -CC---------CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccc
Q 010206 253 -DD---------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH 322 (515)
Q Consensus 253 -~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 322 (515)
.+ +.+.+||+.+++.. .+ .....|...+..++|+||| +.|++++. +.|++||+.+++...
T Consensus 79 ~~~~~~~~~~~~~~i~~~d~~~~~~~-~l-----~~~~~~~~~~~~~~~SPdG-~~la~~~~-~~i~~~~~~~g~~~~-- 148 (723)
T 1xfd_A 79 YNVEPIYQHSYTGYYVLSKIPHGDPQ-SL-----DPPEVSNAKLQYAGWGPKG-QQLIFIFE-NNIYYCAHVGKQAIR-- 148 (723)
T ss_dssp ESCCCCSSSCCCSEEEEEESSSCCCE-EC-----CCTTCCSCCCSBCCBCSST-TCEEEEET-TEEEEESSSSSCCEE--
T ss_pred ecCccceeecceeeEEEEECCCCceE-ec-----cCCccccccccccEECCCC-CEEEEEEC-CeEEEEECCCCceEE--
Confidence 43 78899999876541 11 1223455568899999999 88888776 799999998875421
Q ss_pred cceeeeccCCCccccccccc---------cceeEEEEccCCCEEEEEcC-C-----------------------------
Q 010206 323 SKLFEEQEAPGTRSFFTEII---------ASISDIKFARNGRHILSRDY-M----------------------------- 363 (515)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~s~~~~~l~s~~~-~----------------------------- 363 (515)
....... ...+.++. +.+.+++|||||+.|++++. +
T Consensus 149 --~~~~~~~---~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 223 (723)
T 1xfd_A 149 --VVSTGKE---GVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGS 223 (723)
T ss_dssp --EECCCBT---TTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTS
T ss_pred --EecCCCC---CceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCC
Confidence 1111000 00011111 13478999999999998642 2
Q ss_pred -----eEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecC----CCcEEEEecCCCCcc
Q 010206 364 -----TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY----SNLFRVFGCSEGSAE 434 (515)
Q Consensus 364 -----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~----dg~i~iw~~~~~~~~ 434 (515)
.|++||+.+ ++....+..+.... ..-..+..++|||||++|++.+. +..|++||+.+++..
T Consensus 224 ~~~~~~l~~~d~~~-~~~~~~l~~~~~~~---------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~ 293 (723)
T 1xfd_A 224 ENPSISLHVIGLNG-PTHDLEMMPPDDPR---------MREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT 293 (723)
T ss_dssp CCCEEEEEEEESSS-SCCCEECCCCCCGG---------GSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE
T ss_pred CCCeeEEEEEECCC-CceeEEeeCCccCC---------CccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcce
Confidence 677888775 44334443321100 00112458999999999876643 468999999987433
Q ss_pred eeeec-cCCCce----eeEEECCCCCeeEe--ecCCC----e--EEEec---CCCCCccccCCccccccCCeeE-EEEcC
Q 010206 435 STTLE-ASKNPM----RRQVQTPSRPSRPL--GSLSG----V--VRRVK---GADNSALDANGNAFDFSMKLLH-LAWHP 497 (515)
Q Consensus 435 ~~~~~-~~~~~v----~~~~~~~~~~~l~s--~~~d~----~--v~l~~---~~~~~~~~~~~~~~~~~~~i~~-~~~s~ 497 (515)
..+. .+...+ ..++|+|+|+.|+. +..++ . +.+++ +.... ...........+.. ++|+|
T Consensus 294 -~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---~~~~l~~~~~~~~~~~~~sp 369 (723)
T 1xfd_A 294 -KKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND---NIQSITSGDWDVTKILAYDE 369 (723)
T ss_dssp -EEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC---CCCBSCCSSSCEEEEEEEET
T ss_pred -EEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcc---ceeEeecCCeEEEeeeEEcC
Confidence 3333 333333 37899999998775 45566 4 44433 11100 01111112334544 69999
Q ss_pred CCCEEEEEcC----CcEEEEe
Q 010206 498 SENSIACAAS----NSLYMYY 514 (515)
Q Consensus 498 ~~~~la~~~~----~~~~i~~ 514 (515)
||+.|++.+. ....||.
T Consensus 370 dg~~l~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 370 KGNKIYFLSTEDLPRRRQLYS 390 (723)
T ss_dssp TTTEEEEEESSSCTTCCEEEE
T ss_pred CCCEEEEEEcCCCCcceEEEE
Confidence 9999986543 3466764
No 147
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=1.4e-19 Score=168.85 Aligned_cols=235 Identities=11% Similarity=0.046 Sum_probs=154.3
Q ss_pred eEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCc-cc-cccCCceEEEEEecCCCcEEEEEe--cCCeEEE
Q 010206 237 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPA-NM-EDLTEVITSAEFHPTHCNMLAYSS--SKGSIRL 310 (515)
Q Consensus 237 v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~-~~-~~~~~~i~~i~~~p~~~~~l~~~~--~dg~i~~ 310 (515)
+..++|+|+++.++.+ .++.|.+||+.+++....+. .... .. ......+.+++|+|++ +.+++++ .++.|.+
T Consensus 91 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~i~~ 168 (353)
T 3vgz_A 91 PFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLV-LDDRKRTEEVRPLQPRELVADDAT-NTVYISGIGKESVIWV 168 (353)
T ss_dssp CCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEE-SCCCCCCSSCCCCEEEEEEEETTT-TEEEEEEESSSCEEEE
T ss_pred cceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEe-cCCCccccccCCCCCceEEECCCC-CEEEEEecCCCceEEE
Confidence 4568899999866554 58999999998776433211 1000 00 0001137899999998 6555555 4789999
Q ss_pred EecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccccc
Q 010206 311 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPK 389 (515)
Q Consensus 311 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~ 389 (515)
||+.+++... .+. .+...+.+++|+|+|+++++++. +.|.+||+.+ ++....+.......
T Consensus 169 ~d~~~~~~~~----~~~------------~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~-- 229 (353)
T 3vgz_A 169 VDGGNIKLKT----AIQ------------NTGKMSTGLALDSEGKRLYTTNADGELITIDTAD-NKILSRKKLLDDGK-- 229 (353)
T ss_dssp EETTTTEEEE----EEC------------CCCTTCCCCEEETTTTEEEEECTTSEEEEEETTT-TEEEEEEECCCSSS--
T ss_pred EcCCCCceEE----Eec------------CCCCccceEEECCCCCEEEEEcCCCeEEEEECCC-CeEEEEEEcCCCCC--
Confidence 9998876532 111 11234778999999999988765 9999999986 66665554322100
Q ss_pred ccccccCCCccceeeEEEcCCCCEEEEec-CCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCee-EeecCCCeEE
Q 010206 390 LCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSR-PLGSLSGVVR 467 (515)
Q Consensus 390 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~s-~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~d~~v~ 467 (515)
...+..++|+|++++|+.++ .++.|.+||+.+++ ....+.... ...++++|+++++ ++...++.|.
T Consensus 230 ---------~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~ 297 (353)
T 3vgz_A 230 ---------EHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN-ILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVS 297 (353)
T ss_dssp ---------CCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC-EEEEEECSS--CCCEEEETTTTEEEEEETTTTEEE
T ss_pred ---------CcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc-EEEEEEcCC--CceEEECCCCCEEEEEECCCCeEE
Confidence 01134799999999877665 45999999998874 334444333 2579999999965 4555789999
Q ss_pred EecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCC
Q 010206 468 RVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASN 508 (515)
Q Consensus 468 l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~ 508 (515)
+++..... .. ..+.....+..++|+|||++|+++..+
T Consensus 298 ~~d~~~~~---~~-~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 298 VIDAKSYK---VV-KTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEETTTTE---EE-EEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred EEECCCCe---EE-EEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 84432211 11 112234578999999999988876543
No 148
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.87 E-value=5.1e-21 Score=190.98 Aligned_cols=271 Identities=13% Similarity=0.024 Sum_probs=178.4
Q ss_pred ccccceEEEEECCCCCeEEeecC-CCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 33 QEVDIISAIEFDKSGDHLATGDR-GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~lasg~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
.+..+|.+++|+|||++||+++. ||+++||++.+++.. .+..|.
T Consensus 19 ~~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~------------------------~lt~~~----------- 63 (582)
T 3o4h_A 19 LIAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV------------------------KLNREP----------- 63 (582)
T ss_dssp HHHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE------------------------ECCSSC-----------
T ss_pred HhccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE------------------------eeeccc-----------
Confidence 34678999999999999999876 999999998655421 122222
Q ss_pred cceeEEEEEeecCCCcEEEeeeC---CCeEEEEEccC--CeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcc
Q 010206 112 EEKINKIRWCQSANSALYLLSTN---DKTIKLWKVQE--KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~---d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l 186 (515)
...+..+.|+ ++ +.+++++. +...++|.+.. ......
T Consensus 64 ~~~~~~~~~s--pd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~----------------------------------- 105 (582)
T 3o4h_A 64 INSVLDPHYG--VG-RVILVRDVSKGAEQHALFKVNTSRPGEEQR----------------------------------- 105 (582)
T ss_dssp CSEECEECTT--CS-EEEEEEECSTTSCCEEEEEEETTSTTCCEE-----------------------------------
T ss_pred ccccccccCC--CC-eEEEEeccCCCCcceEEEEEeccCCCcccc-----------------------------------
Confidence 0468899995 44 56666654 45566665543 110000
Q ss_pred ccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCC--EEEEeCCCcEEEEeCCC
Q 010206 187 ERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE--TFISADDLRINLWNLEI 264 (515)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~d~~i~iwd~~~ 264 (515)
+ ... ..+...+|+|+++ .++++.++.+.+||+.+
T Consensus 106 ---------------------------l---------------~~~--~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~ 141 (582)
T 3o4h_A 106 ---------------------------L---------------EAV--KPMRILSGVDTGEAVVFTGATEDRVALYALDG 141 (582)
T ss_dssp ---------------------------C---------------TTS--CSBEEEEEEECSSCEEEEEECSSCEEEEEEET
T ss_pred ---------------------------c---------------cCC--CCceeeeeCCCCCeEEEEecCCCCceEEEccC
Confidence 0 001 1122456777765 44445555566999986
Q ss_pred CCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC----CeEEEEecCcccccccccceeeeccCCCccccccc
Q 010206 265 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK----GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 340 (515)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d----g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (515)
++.. .+..+.. .+++|+||| +.|++++.+ +.|++||+.+++.. . +..
T Consensus 142 g~~~---------~l~~~~~--~~~~~spDG-~~la~~~~~~~~~~~i~~~d~~~g~~~-----~------------l~~ 192 (582)
T 3o4h_A 142 GGLR---------ELARLPG--FGFVSDIRG-DLIAGLGFFGGGRVSLFTSNLSSGGLR-----V------------FDS 192 (582)
T ss_dssp TEEE---------EEEEESS--CEEEEEEET-TEEEEEEEEETTEEEEEEEETTTCCCE-----E------------ECC
T ss_pred CcEE---------EeecCCC--ceEEECCCC-CEEEEEEEcCCCCeEEEEEcCCCCCce-----E------------eec
Confidence 6432 1222223 789999999 899988777 78999999887632 1 344
Q ss_pred cccceeEEEEccCCCEEEEEcC-C--eEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEe
Q 010206 341 IIASISDIKFARNGRHILSRDY-M--TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 417 (515)
Q Consensus 341 ~~~~i~~~~~s~~~~~l~s~~~-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 417 (515)
|...+..++|||||+.|++++. + .|++||+.+ ++.. .+..+........ ..+....+|+|||.+++++
T Consensus 193 ~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~-~~~~-~~~~~~~~~~~~~-------~~~~~~~~~spdg~~~~~~ 263 (582)
T 3o4h_A 193 GEGSFSSASISPGMKVTAGLETAREARLVTVDPRD-GSVE-DLELPSKDFSSYR-------PTAITWLGYLPDGRLAVVA 263 (582)
T ss_dssp SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT-CCEE-ECCCSCSHHHHHC-------CSEEEEEEECTTSCEEEEE
T ss_pred CCCccccceECCCCCEEEEccCCCeeEEEEEcCCC-CcEE-EccCCCcChhhhh-------hccccceeEcCCCcEEEEE
Confidence 5567899999999999997654 6 899999985 5544 4444433211000 0001123399999999999
Q ss_pred cCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCe
Q 010206 418 SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV 465 (515)
Q Consensus 418 s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 465 (515)
+.|+.+++|++ + .... .....+..++++ +++++++++.+.+
T Consensus 264 ~~~g~~~l~~~--g-~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~ 304 (582)
T 3o4h_A 264 RREGRSAVFID--G-ERVE---APQGNHGRVVLW-RGKLVTSHTSLST 304 (582)
T ss_dssp EETTEEEEEET--T-EEEC---CCSSEEEEEEEE-TTEEEEEEEETTE
T ss_pred EcCCcEEEEEE--C-Ceec---cCCCceEEEEec-CCEEEEEEcCCCC
Confidence 99999999999 4 2222 334678889999 9999988887754
No 149
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.87 E-value=1.3e-19 Score=168.63 Aligned_cols=266 Identities=9% Similarity=0.101 Sum_probs=164.9
Q ss_pred cccccceEEEEECCCCCeEEeecC---CCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDR---GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~---dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (515)
..+...+..++|+|||+ |++++. ++.|.+|++.+++.. .+..+..+.
T Consensus 36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~---------------------~~~~~~~~~-------- 85 (347)
T 3hfq_A 36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH---------------------KLNTVVAPG-------- 85 (347)
T ss_dssp EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE---------------------EEEEEEEES--------
T ss_pred eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE---------------------EeeeeecCC--------
Confidence 45667788999999999 555443 689999999665421 222223333
Q ss_pred ccccceeEEEEEeecCCCcEEEeee-CCCeEEEEEcc-CCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcc
Q 010206 109 LEIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQ-EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (515)
Q Consensus 109 ~~~~~~v~~l~~~~~~~~~~l~~~~-~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l 186 (515)
..+..++| ++++++|++++ .++.|.+|++. ++........... +.
T Consensus 86 ----~~p~~~a~--spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~-------------------------~~-- 132 (347)
T 3hfq_A 86 ----TPPAYVAV--DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHS-------------------------GH-- 132 (347)
T ss_dssp ----CCCSEEEE--ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECC-------------------------CC--
T ss_pred ----CCCEEEEE--CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecC-------------------------CC--
Confidence 56889999 55677888887 78999999995 3333222211100 00
Q ss_pred ccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCC
Q 010206 187 ERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS 265 (515)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~ 265 (515)
.. . ...+...+.+++|+|+++++++. .++.|.+|++...
T Consensus 133 -------------------------------~p----~-----~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~ 172 (347)
T 3hfq_A 133 -------------------------------GP----R-----PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDA 172 (347)
T ss_dssp -------------------------------CS----S-----TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTT
T ss_pred -------------------------------CC----C-----ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCC
Confidence 00 0 01233568899999999966556 6899999999833
Q ss_pred CcccceecccCccccc-cCCceEEEEEecCCCc-EEEEEecCCeEEEEecCc--ccccccccceeeeccCCCcccccccc
Q 010206 266 NQSFNIVDVKPANMED-LTEVITSAEFHPTHCN-MLAYSSSKGSIRLIDMRQ--SALCDTHSKLFEEQEAPGTRSFFTEI 341 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~-~~~~i~~i~~~p~~~~-~l~~~~~dg~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (515)
....... .+.. ....+..++|+|++ + +++++..++.|.+|++.. ++.. ....+...... + ..
T Consensus 173 g~~~~~~-----~~~~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~--~~~~~~~~~~~-----~-~~ 238 (347)
T 3hfq_A 173 GQLSEQS-----VLTMEAGFGPRHLVFSPDG-QYAFLAGELSSQIASLKYDTQTGAFT--QLGIVKTIPAD-----Y-TA 238 (347)
T ss_dssp SCEEEEE-----EEECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEEETTTTEEE--EEEEEESSCTT-----C-CS
T ss_pred CcEEEee-----eEEcCCCCCCceEEECCCC-CEEEEEeCCCCEEEEEEecCCCCceE--EeeeeeecCCC-----C-CC
Confidence 3221111 1111 23357889999999 6 455566789999999874 3321 01111110000 0 01
Q ss_pred ccceeEEEEccCCCEEEE-Ec-CCeEEEEEeeCCCC--CeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEe
Q 010206 342 IASISDIKFARNGRHILS-RD-YMTLKLWDINMDSG--PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 417 (515)
Q Consensus 342 ~~~i~~~~~s~~~~~l~s-~~-~~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 417 (515)
...+..++|+|||++|++ .. ++.|.+|++...+. .+..+..+... +..++|+|||++|+++
T Consensus 239 ~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~spdg~~l~v~ 303 (347)
T 3hfq_A 239 HNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDF---------------PRDFDLDPTEAFVVVV 303 (347)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSC---------------CCEEEECTTSSEEEEE
T ss_pred CCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCC---------------cCeEEECCCCCEEEEE
Confidence 135788999999998865 44 49999999974222 22223222211 2389999999988877
Q ss_pred cC-CCcEEEEecC
Q 010206 418 SY-SNLFRVFGCS 429 (515)
Q Consensus 418 s~-dg~i~iw~~~ 429 (515)
+. ++.|.+|++.
T Consensus 304 ~~~~~~v~v~~~d 316 (347)
T 3hfq_A 304 NQNTDNATLYARD 316 (347)
T ss_dssp ETTTTEEEEEEEC
T ss_pred EcCCCcEEEEEEe
Confidence 65 5899999553
No 150
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=6.4e-20 Score=169.83 Aligned_cols=278 Identities=9% Similarity=0.095 Sum_probs=182.1
Q ss_pred CeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecc-cCCCcccccccccccc-eeEEEEEeecCC
Q 010206 48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ-SHEPEFDYLKSLEIEE-KINKIRWCQSAN 125 (515)
Q Consensus 48 ~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~-~v~~l~~~~~~~ 125 (515)
++|++++.++.|.+||..+++.. ..+. ++. . .+..++| +++
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~-----------------------~~~~~~~~------------~~~~~~~~~--s~d 44 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVD-----------------------KVITIADA------------GPTPMVPMV--APG 44 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEE-----------------------EEEECTTC------------TTCCCCEEE--CTT
T ss_pred cEEEEcCCCCeEEEEECCCCcEE-----------------------EEEEcCCC------------CCCccceEE--cCC
Confidence 57899999999999998876532 2222 110 1 3778899 456
Q ss_pred CcEEE-eeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCC--
Q 010206 126 SALYL-LSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPG-- 202 (515)
Q Consensus 126 ~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~-- 202 (515)
++.++ ++..++.|.+||+.+++............ ....+ ..++++|+|+.+ +++.
T Consensus 45 g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~---~~~~~-------~~~~~s~dg~~l------------~~~~~~ 102 (337)
T 1pby_B 45 GRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE---RVKSL-------FGAALSPDGKTL------------AIYESP 102 (337)
T ss_dssp SSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE---EEECT-------TCEEECTTSSEE------------EEEEEE
T ss_pred CCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc---ccccc-------cceEECCCCCEE------------EEEecc
Confidence 65654 45667899999999988665544321000 00011 178999999887 5543
Q ss_pred ----------CcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCccccee
Q 010206 203 ----------GVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIV 272 (515)
Q Consensus 203 ----------~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~ 272 (515)
.++.|.+|| +... +....+ .....+.+++|+|++++|+++ ++.|.+||+.+++....+
T Consensus 103 ~~~~~~~~~~~~~~i~v~d--~~~~------~~~~~~--~~~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~~~- 170 (337)
T 1pby_B 103 VRLELTHFEVQPTRVALYD--AETL------SRRKAF--EAPRQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDK- 170 (337)
T ss_dssp EEECSSCEEECCCEEEEEE--TTTT------EEEEEE--ECCSSCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEEEE-
T ss_pred cccccccccccCceEEEEE--CCCC------cEEEEE--eCCCCcceeEECCCCCEEEEe-CCeEEEEECCCCcEeeee-
Confidence 468999999 3321 122221 123457889999999988887 688999999876543211
Q ss_pred cccCccccccCCceEEEEEecCCCcEEEEEe-cCC-----------------------eEEEEecCcccccccccceeee
Q 010206 273 DVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKG-----------------------SIRLIDMRQSALCDTHSKLFEE 328 (515)
Q Consensus 273 ~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg-----------------------~i~~wd~~~~~~~~~~~~~~~~ 328 (515)
....+..+ +.|+|++ ..++..+ .++ .|.+||+.+++.. ...
T Consensus 171 -----~~~~~~~~---~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-----~~~- 235 (337)
T 1pby_B 171 -----PIQSWEAE---TYAQPDV-LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-----MRE- 235 (337)
T ss_dssp -----CSTTTTTT---TBCCCBC-CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-----EEE-
T ss_pred -----eccccCCC---ceeCCCc-cEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-----Eee-
Confidence 11111122 2678888 4443333 233 4688999887642 111
Q ss_pred ccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEc
Q 010206 329 QEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 408 (515)
Q Consensus 329 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 408 (515)
+..+...+.+++|+|+|++++++ ++.|.+||+.+ ++.+..+..+.. +.+++|+
T Consensus 236 ---------~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~-~~~~~~~~~~~~----------------~~~~~~s 288 (337)
T 1pby_B 236 ---------VRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEK-NASIKRVPLPHS----------------YYSVNVS 288 (337)
T ss_dssp ---------EEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTT-TEEEEEEECSSC----------------CCEEEEC
T ss_pred ---------cCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCC-CcCcceecCCCc----------------eeeEEEC
Confidence 12233567889999999999988 68999999985 665555543321 2389999
Q ss_pred CCCCEEEEecCCCcEEEEecCCCCcceeeec
Q 010206 409 GDGGRVATGSYSNLFRVFGCSEGSAESTTLE 439 (515)
Q Consensus 409 ~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 439 (515)
|||++|++++.++.|++||+.+++ ....+.
T Consensus 289 ~dg~~l~~~~~~~~i~v~d~~~~~-~~~~~~ 318 (337)
T 1pby_B 289 TDGSTVWLGGALGDLAAYDAETLE-KKGQVD 318 (337)
T ss_dssp TTSCEEEEESBSSEEEEEETTTCC-EEEEEE
T ss_pred CCCCEEEEEcCCCcEEEEECcCCc-EEEEEE
Confidence 999999999999999999999874 334443
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.86 E-value=8.9e-19 Score=162.87 Aligned_cols=216 Identities=9% Similarity=0.092 Sum_probs=136.0
Q ss_pred CcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCc----cccccCCceEEEEEecCCCcEEEEEecCC
Q 010206 233 HDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPA----NMEDLTEVITSAEFHPTHCNMLAYSSSKG 306 (515)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~i~~i~~~p~~~~~l~~~~~dg 306 (515)
+...+..++|+|++++|+++ .++.|.+|++........+...... ....+...+.+++|+|++ +++++...++
T Consensus 84 ~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg-~l~v~~~~~~ 162 (347)
T 3hfq_A 84 PGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN-RLAVIDLGSD 162 (347)
T ss_dssp ESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS-CEEEEETTTT
T ss_pred CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC-cEEEEeCCCC
Confidence 34567789999999988776 5899999999643322111110000 001123458899999999 6777777789
Q ss_pred eEEEEecC-cccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEE-cC-CeEEEEEeeCCCCCeeeEeee
Q 010206 307 SIRLIDMR-QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DY-MTLKLWDINMDSGPVATFQVH 383 (515)
Q Consensus 307 ~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~~-~~i~iwd~~~~~~~~~~~~~~ 383 (515)
.|.+||+. +++... ...+... ....+..++|+|||+++++. .. +.|.+|++......+......
T Consensus 163 ~v~~~~~~~~g~~~~--~~~~~~~-----------~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~ 229 (347)
T 3hfq_A 163 KVYVYNVSDAGQLSE--QSVLTME-----------AGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIV 229 (347)
T ss_dssp EEEEEEECTTSCEEE--EEEEECC-----------TTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEECCCCcEEE--eeeEEcC-----------CCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeee
Confidence 99999998 443211 1111110 01246789999999977764 33 899999998422222211111
Q ss_pred ccccccccccccCCCccceeeEEEcCCCCEE-EEecCCCcEEEEecCCCC--cceeeeccCCCceeeEEECCCCCeeEee
Q 010206 384 EHLRPKLCDLYENDSIFDKFECCLSGDGGRV-ATGSYSNLFRVFGCSEGS--AESTTLEASKNPMRRQVQTPSRPSRPLG 460 (515)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~s~dg~i~iw~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 460 (515)
...... . .....+..++|+|||++| ++...++.|.+|++...+ .....+..+...+..++|+|++++|+++
T Consensus 230 ~~~~~~----~--~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~ 303 (347)
T 3hfq_A 230 KTIPAD----Y--TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVV 303 (347)
T ss_dssp ESSCTT----C--CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEE
T ss_pred eecCCC----C--CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEE
Confidence 100000 0 000124479999999987 455678999999997432 2234555666678899999999988877
Q ss_pred cCC-CeEEE
Q 010206 461 SLS-GVVRR 468 (515)
Q Consensus 461 ~~d-~~v~l 468 (515)
+.+ +.+.+
T Consensus 304 ~~~~~~v~v 312 (347)
T 3hfq_A 304 NQNTDNATL 312 (347)
T ss_dssp ETTTTEEEE
T ss_pred EcCCCcEEE
Confidence 654 88887
No 152
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=5.5e-20 Score=170.28 Aligned_cols=234 Identities=13% Similarity=0.066 Sum_probs=157.8
Q ss_pred eEEEEecCCCCEEEE-e-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEe-----------
Q 010206 237 INSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS----------- 303 (515)
Q Consensus 237 v~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~----------- 303 (515)
+..++|+|+++.++. + .++.|.+||+.+++....+. .. ....+...+.+++|+|++ +.++++.
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~-~~--~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~ 111 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRID-LS--TPEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFE 111 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEE-CC--BTTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEE
T ss_pred ccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEE-cC--CcccccccccceEECCCC-CEEEEEeccccccccccc
Confidence 567899999987655 4 68999999998766432211 00 000012256789999998 7777775
Q ss_pred -cCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEee
Q 010206 304 -SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQV 382 (515)
Q Consensus 304 -~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~ 382 (515)
.++.|.+||+.+++... .+.. ...+.+++|+|+|++|+++ ++.|.+||+.+ ++....+..
T Consensus 112 ~~~~~i~v~d~~~~~~~~----~~~~-------------~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~-~~~~~~~~~ 172 (337)
T 1pby_B 112 VQPTRVALYDAETLSRRK----AFEA-------------PRQITMLAWARDGSKLYGL-GRDLHVMDPEA-GTLVEDKPI 172 (337)
T ss_dssp ECCCEEEEEETTTTEEEE----EEEC-------------CSSCCCEEECTTSSCEEEE-SSSEEEEETTT-TEEEEEECS
T ss_pred ccCceEEEEECCCCcEEE----EEeC-------------CCCcceeEECCCCCEEEEe-CCeEEEEECCC-CcEeeeeec
Confidence 57999999998775421 1211 1346788999999988887 57899999986 555554443
Q ss_pred eccccccccccccCCCccceeeEEEcCCCCEEEEecCC-C-----------------------cEEEEecCCCCcceeee
Q 010206 383 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-N-----------------------LFRVFGCSEGSAESTTL 438 (515)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d-g-----------------------~i~iw~~~~~~~~~~~~ 438 (515)
+.... .+.|+|++++|+..+.+ + .|.+||+.+++.....+
T Consensus 173 ~~~~~----------------~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~ 236 (337)
T 1pby_B 173 QSWEA----------------ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV 236 (337)
T ss_dssp TTTTT----------------TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE
T ss_pred cccCC----------------CceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeec
Confidence 22110 34678888876544432 2 46899999875444445
Q ss_pred ccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcC-CcEEEEeC
Q 010206 439 EASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS-NSLYMYYA 515 (515)
Q Consensus 439 ~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~-~~~~i~~~ 515 (515)
..+...+..++++|++++++++ ++.+.+++..... .. ..+.....+.+++|+||+++|++++. +.+.+|+.
T Consensus 237 ~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~---~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~ 308 (337)
T 1pby_B 237 RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA---SI-KRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308 (337)
T ss_dssp EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE---EE-EEEECSSCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred CCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCc---Cc-ceecCCCceeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence 5666778889999999999888 7888884432111 10 11223456789999999998887764 55888863
No 153
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=1.2e-19 Score=181.08 Aligned_cols=259 Identities=9% Similarity=0.028 Sum_probs=177.0
Q ss_pred ceeEEEEEeecCCCcEEEeeeC-CCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTN-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
.+|.+++|+ +||+.|++++. ||+++||++.+++...+
T Consensus 22 ~~~~~~~~~--~DG~~la~~s~~~g~~~lw~~~~g~~~~l---------------------------------------- 59 (582)
T 3o4h_A 22 VEKYSLQGV--VDGDKLLVVGFSEGSVNAYLYDGGETVKL---------------------------------------- 59 (582)
T ss_dssp SCEEEEEEE--ETTTEEEEEEEETTEEEEEEEETTEEEEC----------------------------------------
T ss_pred cchheeecC--CCCCeEEEEEccCCceeEEEEcCCCcEee----------------------------------------
Confidence 569999995 56779998876 99999999866543221
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-C---CCcEEEEeCCC--C
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D---DLRINLWNLEI--S 265 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~---d~~i~iwd~~~--~ 265 (515)
...+...+..++|+|| ++++++ . +....+|.+.. .
T Consensus 60 --------------------------------------t~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~ 100 (582)
T 3o4h_A 60 --------------------------------------NREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRP 100 (582)
T ss_dssp --------------------------------------CSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTST
T ss_pred --------------------------------------ecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCC
Confidence 1122246788999999 666665 3 45566765543 2
Q ss_pred CcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccce
Q 010206 266 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 345 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 345 (515)
.....+ . ....+...+|+|++...+++.+.++.+.+||+.+++.. .+ ..+..
T Consensus 101 g~~~~l--------~-~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~-----~l------------~~~~~-- 152 (582)
T 3o4h_A 101 GEEQRL--------E-AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR-----EL------------ARLPG-- 152 (582)
T ss_dssp TCCEEC--------T-TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE-----EE------------EEESS--
T ss_pred Cccccc--------c-CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE-----Ee------------ecCCC--
Confidence 222111 1 12224466888887444555555555669999877531 11 11112
Q ss_pred eEEEEccCCCEEEEEc-C----CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCC
Q 010206 346 SDIKFARNGRHILSRD-Y----MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 420 (515)
Q Consensus 346 ~~~~~s~~~~~l~s~~-~----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d 420 (515)
.+++|||||++|++++ + ..|++||+.+ ++. ..+..+... +..++|||||++|+++..+
T Consensus 153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~-g~~-~~l~~~~~~---------------~~~~~~SpDG~~l~~~~~~ 215 (582)
T 3o4h_A 153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS-GGL-RVFDSGEGS---------------FSSASISPGMKVTAGLETA 215 (582)
T ss_dssp CEEEEEEETTEEEEEEEEETTEEEEEEEETTT-CCC-EEECCSSCE---------------EEEEEECTTSCEEEEEECS
T ss_pred ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC-CCc-eEeecCCCc---------------cccceECCCCCEEEEccCC
Confidence 7899999999999643 3 5789999875 443 455555433 3489999999999988888
Q ss_pred C--cEEEEecCCCCcceeeeccCCCceeeEE--------ECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCe
Q 010206 421 N--LFRVFGCSEGSAESTTLEASKNPMRRQV--------QTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKL 490 (515)
Q Consensus 421 g--~i~iw~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i 490 (515)
+ .|++||+.++... .+..|...+..++ |+|+|.++++++.|+.++++.-.+ ... .....|
T Consensus 216 ~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~g~----~~~----~~~~~v 285 (582)
T 3o4h_A 216 REARLVTVDPRDGSVE--DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFIDGE----RVE----APQGNH 285 (582)
T ss_dssp SCEEEEEECTTTCCEE--ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEETTE----EEC----CCSSEE
T ss_pred CeeEEEEEcCCCCcEE--EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEECC----eec----cCCCce
Confidence 8 8999999987433 6777887888888 999999899999999999933211 111 134678
Q ss_pred eEEEEcCCCCEEEEEcCC
Q 010206 491 LHLAWHPSENSIACAASN 508 (515)
Q Consensus 491 ~~~~~s~~~~~la~~~~~ 508 (515)
.+++|+ +++++++++.+
T Consensus 286 ~~~~~s-dg~~l~~~s~~ 302 (582)
T 3o4h_A 286 GRVVLW-RGKLVTSHTSL 302 (582)
T ss_dssp EEEEEE-TTEEEEEEEET
T ss_pred EEEEec-CCEEEEEEcCC
Confidence 999999 99988876543
No 154
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.85 E-value=1.6e-18 Score=177.50 Aligned_cols=333 Identities=10% Similarity=0.045 Sum_probs=188.2
Q ss_pred ceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeE
Q 010206 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (515)
Q Consensus 37 ~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 116 (515)
...+++|+|||++|+++ ||.|++||+.+++.. ..+.+|... .......
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~-----------------------~~~~~~~~~-------~~~~~~~ 65 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSS-----------------------VFLENSTFD-------EFGHSIN 65 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEE-----------------------EEECTTTTT-------TCCSCCC
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceE-----------------------EEEechhhh-------hhccccc
Confidence 45689999999999987 899999999887632 223444310 0001234
Q ss_pred EEEEeecCCCcEEEeeeCC---------CeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccc
Q 010206 117 KIRWCQSANSALYLLSTND---------KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (515)
Q Consensus 117 ~l~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~ 187 (515)
.+.| ++|+++|+.++.+ +.+.+||+.+++...
T Consensus 66 ~~~~--Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~------------------------------------- 106 (740)
T 4a5s_A 66 DYSI--SPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT------------------------------------- 106 (740)
T ss_dssp EEEE--CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-------------------------------------
T ss_pred ceEE--CCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-------------------------------------
Confidence 5788 6678899998876 445577777665221
Q ss_pred cccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCc
Q 010206 188 RNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQ 267 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~ 267 (515)
+..|...+...+|||||+.|+.+.++.|++||+.++..
T Consensus 107 ------------------------------------------l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~ 144 (740)
T 4a5s_A 107 ------------------------------------------EERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPS 144 (740)
T ss_dssp ------------------------------------------SSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCC
T ss_pred ------------------------------------------cccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCce
Confidence 12344568899999999999998889999999986653
Q ss_pred ccceecccC-ccccccC---------CceEEEEEecCCCcEEEEEecCCe-EEE--------------------------
Q 010206 268 SFNIVDVKP-ANMEDLT---------EVITSAEFHPTHCNMLAYSSSKGS-IRL-------------------------- 310 (515)
Q Consensus 268 ~~~~~~~~~-~~~~~~~---------~~i~~i~~~p~~~~~l~~~~~dg~-i~~-------------------------- 310 (515)
..-..+-.. ..+.++. +....+.|+||| +.|+.++.|.. +.+
T Consensus 145 ~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~ 223 (740)
T 4a5s_A 145 YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGA 223 (740)
T ss_dssp EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTS
T ss_pred EEEcCCCCccceecCcccccccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcC
Confidence 211000000 0111111 112358999999 78887764332 444
Q ss_pred ---------EecCc---ccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc----C-CeEEEEEeeCC
Q 010206 311 ---------IDMRQ---SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----Y-MTLKLWDINMD 373 (515)
Q Consensus 311 ---------wd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~----~-~~i~iwd~~~~ 373 (515)
||+.+ ++... ...+.. ...+.+|...+..++|+|||+.++... . ..|.+||+.+
T Consensus 224 ~~~~~~l~v~d~~~~~~~~~~~--~~~l~~------~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t- 294 (740)
T 4a5s_A 224 VNPTVKFFVVNTDSLSSVTNAT--SIQITA------PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE- 294 (740)
T ss_dssp CCCEEEEEEEETTSCCSSSCCC--EEEECC------CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET-
T ss_pred cCCeeEEEEEECCCCCCCCcce--EEEecC------CccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC-
Confidence 44443 31000 000000 000113667799999999999776532 2 5799999986
Q ss_pred CC----C--eeeE--eeeccccccccccccCCCccceeeEEEcCCCCEEE-Eec-CC--CcEEEEecCCCCcceeeeccC
Q 010206 374 SG----P--VATF--QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA-TGS-YS--NLFRVFGCSEGSAESTTLEAS 441 (515)
Q Consensus 374 ~~----~--~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~s-~d--g~i~iw~~~~~~~~~~~~~~~ 441 (515)
++ + +..+ ..+...+.. .....+.|+|||+.|+ ..+ .+ ..|++||+.++. . ..+...
T Consensus 295 g~~~~~~~~~~~l~~~~~~~~v~~----------~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~-~-~~lT~g 362 (740)
T 4a5s_A 295 SSGRWNCLVARQHIEMSTTGWVGR----------FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD-C-TFITKG 362 (740)
T ss_dssp TTTEEEECGGGCEEEECSSSCSSS----------SSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS-C-EESCCS
T ss_pred CccccceeEEEEeeeccCCceEcc----------CcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc-e-EecccC
Confidence 54 1 2222 222222110 0012678999999877 665 33 468888887653 3 233333
Q ss_pred CCceeeEEECCCCCe-eEeecC----CC--eEEEe--cCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEc
Q 010206 442 KNPMRRQVQTPSRPS-RPLGSL----SG--VVRRV--KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 506 (515)
Q Consensus 442 ~~~v~~~~~~~~~~~-l~s~~~----d~--~v~l~--~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~ 506 (515)
...+..+.. ++++. +.+++. .+ .+..+ ++.... ..+..........+..++|||++++++...
T Consensus 363 ~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~-~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~ 434 (740)
T 4a5s_A 363 TWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKV-TCLSCELNPERCQYYSVSFSKEAKYYQLRC 434 (740)
T ss_dssp SSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEE-EESSTTTSTTTBCBEEEEECTTSSEEEEEE
T ss_pred CEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcc-eeeccccCCCCCceEEEEECCCCCEEEEEe
Confidence 444444432 33554 444443 12 33332 111110 001100011235678999999999888554
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.85 E-value=1.5e-17 Score=155.47 Aligned_cols=206 Identities=13% Similarity=0.114 Sum_probs=128.8
Q ss_pred CCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecc------cCccccccCCceEEEEEecCCCcEE-EEEecC
Q 010206 235 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDV------KPANMEDLTEVITSAEFHPTHCNML-AYSSSK 305 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~i~~i~~~p~~~~~l-~~~~~d 305 (515)
..+..+++ ++++|+++ .++.|.+|++........+... .+.....+...+.+++|+|++ +.+ +++..+
T Consensus 100 ~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~ 176 (361)
T 3scy_A 100 ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDG-KYLLADDLGT 176 (361)
T ss_dssp SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTS-SEEEEEETTT
T ss_pred CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCC-CEEEEEeCCC
Confidence 44566777 77777765 6899999999755433221100 000111234457899999999 655 444458
Q ss_pred CeEEEEecCcccc------cccc--cceeeeccCCCccccccccccceeEEEEccCCCEEEEEc--CCeEEEEEeeCCCC
Q 010206 306 GSIRLIDMRQSAL------CDTH--SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSG 375 (515)
Q Consensus 306 g~i~~wd~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~~~i~iwd~~~~~~ 375 (515)
+.|.+|++..... +... ..... ..+......++|+|+|+++++++ ++.|.+||+.. +.
T Consensus 177 ~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~-g~ 244 (361)
T 3scy_A 177 DQIHKFNINPNANADNKEKFLTKGTPEAFK-----------VAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD-GM 244 (361)
T ss_dssp TEEEEEEECTTCCTTTCCCCEEEEEEEEEE-----------CCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET-TE
T ss_pred CEEEEEEEcCCCCcccccceeeccccccee-----------cCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC-Cc
Confidence 9999999875431 1000 00001 11124567899999999887765 39999999984 43
Q ss_pred Ce--eeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecC--CCcEEEEecC--CCCc-ceeeeccCCCceeeE
Q 010206 376 PV--ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY--SNLFRVFGCS--EGSA-ESTTLEASKNPMRRQ 448 (515)
Q Consensus 376 ~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~--dg~i~iw~~~--~~~~-~~~~~~~~~~~v~~~ 448 (515)
.. ..+..... .......++|+|||++|+++.. ++.|.+|++. ++.. ....+.. ...+..+
T Consensus 245 ~~~~~~~~~~~~------------~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~ 311 (361)
T 3scy_A 245 LDEIQTVAADTV------------NAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNF 311 (361)
T ss_dssp EEEEEEEESCSS------------CCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEE
T ss_pred eEEeEEEecCCC------------CCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceE
Confidence 21 11111110 0011348999999999876654 5899999996 3321 2233334 5567899
Q ss_pred EECCCCCeeEeec-CCCeEEE
Q 010206 449 VQTPSRPSRPLGS-LSGVVRR 468 (515)
Q Consensus 449 ~~~~~~~~l~s~~-~d~~v~l 468 (515)
+|+|++++|++++ .++.+.+
T Consensus 312 ~~spdg~~l~~~~~~~~~v~v 332 (361)
T 3scy_A 312 IITPNGKYLLVACRDTNVIQI 332 (361)
T ss_dssp EECTTSCEEEEEETTTTEEEE
T ss_pred EECCCCCEEEEEECCCCCEEE
Confidence 9999999888877 5788888
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.84 E-value=7.5e-18 Score=157.49 Aligned_cols=290 Identities=10% Similarity=0.066 Sum_probs=170.7
Q ss_pred cccceEEEEECCCCCeEEeecCC----CeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 34 EVDIISAIEFDKSGDHLATGDRG----GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~d----g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
+...+..++|+|||++|++++.+ +.|.+|++....- ..+.+.....+.
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g-------------------~~~~~~~~~~~~--------- 99 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG-------------------TLHLLNTQKTMG--------- 99 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT-------------------EEEEEEEEECSS---------
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC-------------------cEEEeeEeccCC---------
Confidence 67778889999999999998875 7999999875310 011222222222
Q ss_pred cccceeEEEEEeecCCCcEEEeee-CCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~ 188 (515)
.....+++ ++++|++++ .++.|.+|++........... .....+..
T Consensus 100 ---~~p~~~~~----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~-----------------------~~~~~g~~--- 146 (361)
T 3scy_A 100 ---ADPCYLTT----NGKNIVTANYSGGSITVFPIGQDGALLPASD-----------------------VIEFKGSG--- 146 (361)
T ss_dssp ---SCEEEEEE----CSSEEEEEETTTTEEEEEEBCTTSCBCSCSE-----------------------EEECCCCC---
T ss_pred ---CCcEEEEE----CCCEEEEEECCCCEEEEEEeCCCCcCcccce-----------------------eEEccCCC---
Confidence 34566666 456777765 688999999975321110000 00000000
Q ss_pred ccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCC
Q 010206 189 NFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISN 266 (515)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~ 266 (515)
.. . ...+...+.+++|+|++++|+++ .++.|.+|++....
T Consensus 147 ------------------------------~~----~----~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~ 188 (361)
T 3scy_A 147 ------------------------------PD----K----ERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNA 188 (361)
T ss_dssp ------------------------------SC----T----TTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTC
T ss_pred ------------------------------CC----c----cccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCC
Confidence 00 0 01233457899999999977665 58999999987544
Q ss_pred c----c-cceecccCccccccCCceEEEEEecCCCcEEEEEe-cCCeEEEEecCcccccccccceeeeccCCCccccccc
Q 010206 267 Q----S-FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 340 (515)
Q Consensus 267 ~----~-~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (515)
. . .............+...+..++|+|++ +++++++ .++.|.+||+.++.... ...+.. ...
T Consensus 189 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~~--~~~~~~---------~~~ 256 (361)
T 3scy_A 189 NADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLDE--IQTVAA---------DTV 256 (361)
T ss_dssp CTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEEEE--EEEEES---------CSS
T ss_pred CcccccceeecccccceecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceEE--eEEEec---------CCC
Confidence 2 1 100000000112234567899999999 7666666 68999999998664311 111110 111
Q ss_pred cccceeEEEEccCCCEEEEEc---CCeEEEEEeeCC-CC--CeeeEeeeccccccccccccCCCccceeeEEEcCCCCEE
Q 010206 341 IIASISDIKFARNGRHILSRD---YMTLKLWDINMD-SG--PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 414 (515)
Q Consensus 341 ~~~~i~~~~~s~~~~~l~s~~---~~~i~iwd~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 414 (515)
+......++|+|||++|+++. ++.|.+|++... ++ .+..+.. ... +..++|+|||++|
T Consensus 257 ~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~---------------~~~~~~spdg~~l 320 (361)
T 3scy_A 257 NAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIH---------------PRNFIITPNGKYL 320 (361)
T ss_dssp CCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSC---------------CCEEEECTTSCEE
T ss_pred CCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCC---------------CceEEECCCCCEE
Confidence 223467999999999887643 379999999632 22 1222221 111 2389999999988
Q ss_pred EEec-CCCcEEEEecC--CCCcceeee-ccCCCceeeEEEC
Q 010206 415 ATGS-YSNLFRVFGCS--EGSAESTTL-EASKNPMRRQVQT 451 (515)
Q Consensus 415 ~s~s-~dg~i~iw~~~--~~~~~~~~~-~~~~~~v~~~~~~ 451 (515)
++++ .++.|.+|++. ++ .+.... ..+...+.++.|.
T Consensus 321 ~~~~~~~~~v~v~~~d~~~g-~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 321 LVACRDTNVIQIFERDQATG-LLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEETTTTEEEEEEECTTTC-CEEECSCCEECSSEEEEEEE
T ss_pred EEEECCCCCEEEEEEECCCC-cEeecceeeeCCCCeEEEEc
Confidence 8776 67899996554 44 222111 2233445566553
No 157
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=4.6e-18 Score=162.00 Aligned_cols=231 Identities=10% Similarity=0.108 Sum_probs=144.6
Q ss_pred cccccceEEEEECCCCCeEE----eecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLA----TGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~la----sg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (515)
+.|...|++++|+|+|++|| +|+.|+.|+|||+.+....... ..........+.+|.
T Consensus 89 ~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~------------~~~~~~~~~~~~~h~------- 149 (434)
T 2oit_A 89 VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQ------------QKRPFAYHKLLKDAG------- 149 (434)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCS------------SCCCSEEEECCCSGG-------
T ss_pred ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcC------------CcceeeeeeccCCCC-------
Confidence 45667899999999999999 8899999999998764110000 000011224456676
Q ss_pred cccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccc
Q 010206 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (515)
Q Consensus 108 ~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~ 187 (515)
..|.+++|+|. ++.+|++++.||+|++||++++.....
T Consensus 150 -----~~V~~v~~~p~-~~~~las~s~Dg~v~iwD~~~~~~~~~------------------------------------ 187 (434)
T 2oit_A 150 -----GMVIDMKWNPT-VPSMVAVCLADGSIAVLQVTETVKVCA------------------------------------ 187 (434)
T ss_dssp -----GSEEEEEECSS-CTTEEEEEETTSCEEEEEESSSEEEEE------------------------------------
T ss_pred -----CceEEEEECCC-CCCEEEEEECCCeEEEEEcCCCcceee------------------------------------
Confidence 88999999764 256899999999999999987632110
Q ss_pred cccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCC
Q 010206 188 RNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 266 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~ 266 (515)
..+|...|.+++|+|++++|++| .|+.|++||++ ++
T Consensus 188 ------------------------------------------~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~ 224 (434)
T 2oit_A 188 ------------------------------------------TLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQ 224 (434)
T ss_dssp ------------------------------------------EECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CC
T ss_pred ------------------------------------------ccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cc
Confidence 13567889999999999999998 89999999998 33
Q ss_pred cccceecccCccccccCCceEEEEEecCCCcEEEE-EecCC------eEEEEecCcccccccccceeeeccCCCcccccc
Q 010206 267 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY-SSSKG------SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT 339 (515)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~-~~~dg------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (515)
.... +.........|...|.+++|++++ .++++ +..+| .+++|+++...... ...+.....+ ...+.
T Consensus 225 ~~~~-~~~~~~~~~~~~~~v~~v~w~~~~-~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~--~~~~~~~~~~--~~~~~ 298 (434)
T 2oit_A 225 EKKV-IPCPPFYESDHPVRVLDVLWIGTY-VFAIVYAAADGTLETSPDVVMALLPKKEEKH--PEIFVNFMEP--CYGSC 298 (434)
T ss_dssp EEEE-ECCCTTCCTTSCEEEEEEEEEETT-EEEEEEEETTCCSSSCCEEEEEECCCTTTCC--CCEEEECCCS--SCCCC
T ss_pred cccc-ccCCcccCCCCceeEEEEEEecCc-eEEEEEccCCCccCCCCceEEEEeccCCCCC--CcceEecccC--CCCCC
Confidence 2211 111100111244589999999987 55543 33443 38999998653210 0111111110 00001
Q ss_pred ccccceeEEEEccCCCEEEEEcC--CeEEEEEeeC
Q 010206 340 EIIASISDIKFARNGRHILSRDY--MTLKLWDINM 372 (515)
Q Consensus 340 ~~~~~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~ 372 (515)
+...+-..+..-++.+++++++. +.|.|.....
T Consensus 299 ~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~ 333 (434)
T 2oit_A 299 TERQHHYYLSYIEEWDLVLAASAASTEVSILARQS 333 (434)
T ss_dssp SSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECT
T ss_pred CCcCcceeeehhccCCEEEEecCCCCceeEEEecC
Confidence 11223333444467777777543 6777777553
No 158
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.83 E-value=3.8e-19 Score=169.48 Aligned_cols=230 Identities=9% Similarity=-0.006 Sum_probs=151.3
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccc
Q 010206 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (515)
....++.+++++++.++++|+.++ ++||+......... ..... ..... +.....+.+..
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~----~~~~~---------~~~~~-------~~~~~~~~~~~ 93 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNK----PGDDP---------NKIVD-------KVQGLLVPMKF 93 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCC----TTCCT---------TCEEE-------CCCCEEECCSS
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcc----cccCc---------ccccc-------cCccccccCCC
Confidence 345689999999999999999888 99998653221000 00000 00000 00011122336
Q ss_pred eeEEEEEeecCCCcEEE----eeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 114 KINKIRWCQSANSALYL----LSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 114 ~v~~l~~~~~~~~~~l~----~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
.|++++| ++++++|+ +++.|++|++||+.+...... . . .+.
T Consensus 94 ~v~~l~~--spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~---~--~------------------------~~~---- 138 (434)
T 2oit_A 94 PIHHLAL--SCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAK---Q--Q------------------------KRP---- 138 (434)
T ss_dssp CEEEEEE--CTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTC---S--S------------------------CCC----
T ss_pred cccEEEE--cCCCCEEEEEEeccCCCceEEEEEccccccCCc---C--C------------------------cce----
Confidence 7999999 45677898 788999999999976410000 0 0 000
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC-CCEEEEe-CCCcEEEEeCCCCCc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
+ .. ...+.+|...|.+++|+|+ +.+|+++ .|++|++||+++...
T Consensus 139 -----------------~----------------~~-~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~ 184 (434)
T 2oit_A 139 -----------------F----------------AY-HKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK 184 (434)
T ss_dssp -----------------S----------------EE-EECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE
T ss_pred -----------------e----------------ee-eeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc
Confidence 0 00 0113578899999999998 8889988 899999999987643
Q ss_pred ccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 347 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (515)
.. ...+|...|.+++|+|++ ++|++|+.||.|++||++ ++.. ..+..+. .....|...+.+
T Consensus 185 ~~--------~~~~~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~~----~~~~~~~-----~~~~~~~~~v~~ 245 (434)
T 2oit_A 185 VC--------ATLPSTVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQEK----KVIPCPP-----FYESDHPVRVLD 245 (434)
T ss_dssp EE--------EEECGGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CCEE----EEECCCT-----TCCTTSCEEEEE
T ss_pred ee--------eccCCCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-Cccc----ccccCCc-----ccCCCCceeEEE
Confidence 22 334578899999999998 899999999999999998 3221 1111111 001134457999
Q ss_pred EEEccCCCEEEEEc--C------CeEEEEEeeC
Q 010206 348 IKFARNGRHILSRD--Y------MTLKLWDINM 372 (515)
Q Consensus 348 ~~~s~~~~~l~s~~--~------~~i~iwd~~~ 372 (515)
++|++++.++++.+ + ..+++|++.+
T Consensus 246 v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 246 VLWIGTYVFAIVYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp EEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred EEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence 99999988886532 2 2499999985
No 159
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.83 E-value=1.8e-18 Score=160.91 Aligned_cols=292 Identities=9% Similarity=0.018 Sum_probs=174.4
Q ss_pred EEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEE
Q 010206 40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (515)
Q Consensus 40 ~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~ 119 (515)
.+++++++.++++++.++.|.+||..+++.. ..+..+. ...+..++
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~-----------------------~~~~~~~-----------~~~~~~~~ 49 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVY-----------------------KSCVMPD-----------KFGPGTAM 49 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEE-----------------------EEEECSS-----------CCSSCEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEE-----------------------EEEecCC-----------CCCCceeE
Confidence 4578899999999999999999999876532 2222211 01467889
Q ss_pred EeecCCCcEEE-eeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCC
Q 010206 120 WCQSANSALYL-LSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS 198 (515)
Q Consensus 120 ~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 198 (515)
| ++++++++ +...++.|.+||+.+++..........+.. ....+..++++|||+.+
T Consensus 50 ~--s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~---------~~~~~~~~~~spdg~~l------------ 106 (349)
T 1jmx_B 50 M--APDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGE---------VGRSMYSFAISPDGKEV------------ 106 (349)
T ss_dssp E--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTE---------EEECSSCEEECTTSSEE------------
T ss_pred E--CCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccccc---------ccccccceEECCCCCEE------------
Confidence 9 45666555 455789999999999886655443211000 00011278999999988
Q ss_pred CCCCCc------------ccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCC
Q 010206 199 FPPGGV------------SSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISN 266 (515)
Q Consensus 199 ~~~~~~------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~ 266 (515)
++++.+ +.|.+|| +...+. ...... ..+...+.+++|+|+++ ++++ ++.|.+||+.+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~i~~~d--~~~~~~---~~~~~~--~~~~~~~~~~~~s~dg~-l~~~-~~~i~~~d~~~~~ 177 (349)
T 1jmx_B 107 YATVNPTQRLNDHYVVKPPRLEVFS--TADGLE---AKPVRT--FPMPRQVYLMRAADDGS-LYVA-GPDIYKMDVKTGK 177 (349)
T ss_dssp EEEEEEEEECSSCEEECCCEEEEEE--GGGGGG---BCCSEE--EECCSSCCCEEECTTSC-EEEE-SSSEEEECTTTCC
T ss_pred EEEcccccccccccccCCCeEEEEE--CCCccc---cceeee--ccCCCcccceeECCCCc-EEEc-cCcEEEEeCCCCc
Confidence 655544 8999999 443211 111111 12334688999999999 4444 2239999998765
Q ss_pred cccceecccCcccc-------------ccC----CceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeec
Q 010206 267 QSFNIVDVKPANME-------------DLT----EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 329 (515)
Q Consensus 267 ~~~~~~~~~~~~~~-------------~~~----~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 329 (515)
....+ ........ ... .....+++++++............+..+|..+++.. .+..
T Consensus 178 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~- 250 (349)
T 1jmx_B 178 YTVAL-PLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH-----TQEF- 250 (349)
T ss_dssp EEEEE-CSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEE-----EEEE-
T ss_pred eeccc-cccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEE-----eccc-
Confidence 43221 11000000 000 034456666554111000001111222444443321 1111
Q ss_pred cCCCccccccccccceeEEEEcc-CCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEc
Q 010206 330 EAPGTRSFFTEIIASISDIKFAR-NGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 408 (515)
Q Consensus 330 ~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 408 (515)
..+...+..++|+| ++++++++ ++.|.+||+.+ ++.+..+..... +..++|+
T Consensus 251 ---------~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~-~~~~~~~~~~~~----------------~~~~~~s 303 (349)
T 1jmx_B 251 ---------ADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQ-RKLIKAANLDHT----------------YYCVAFD 303 (349)
T ss_dssp ---------EECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTT-TEEEEEEECSSC----------------CCEEEEC
T ss_pred ---------ccCCCcceeeEecCCCCCEEEEE-cCeEEEEECcc-CeEEEEEcCCCC----------------ccceEEC
Confidence 11224578999999 99999988 78999999986 665555543221 2389999
Q ss_pred CCCCEEEEecCCCcEEEEecCCC
Q 010206 409 GDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 409 ~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
|+|++|++++.++.|++||++++
T Consensus 304 ~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 304 KKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp SSSSCEEEESBSSEEEEEETTTT
T ss_pred CCCCEEEEecCCCeEEEEecccc
Confidence 99999888888999999999876
No 160
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.81 E-value=4.3e-17 Score=152.35 Aligned_cols=262 Identities=10% Similarity=0.003 Sum_probs=161.7
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEcc-CCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQ-EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
..+..++| ++++++|++++.+ .|.+|++. +++......... .+... .++++|||+.+.+
T Consensus 40 ~~~~~~a~--spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~-------~g~~~-------~~~~spdg~~l~~--- 99 (365)
T 1jof_A 40 EPISWMTF--DHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPI-------GGHPR-------ANDADTNTRAIFL--- 99 (365)
T ss_dssp CCCSEEEE--CTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEEC-------CSSGG-------GGCTTSCCEEEEE---
T ss_pred CCCcEEEE--CCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeec-------CCCCc-------cEEECCCCCEEEE---
Confidence 35788999 5677789888887 99999997 776544332210 01111 6789999994211
Q ss_pred cCCCCCCCCCC-------------CcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCc
Q 010206 192 CASNDSSFPPG-------------GVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLR 256 (515)
Q Consensus 192 ~~~~~~~~~~~-------------~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~ 256 (515)
+++. .++.+.+|+ +... +... .....+...+...+.+++|+|+|++|+++ .++.
T Consensus 100 -------~~~~~~~~~~~~~~~~~~~g~v~v~~--~~~~-g~~~-~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~ 168 (365)
T 1jof_A 100 -------LAAKQPPYAVYANPFYKFAGYGNVFS--VSET-GKLE-KNVQNYEYQENTGIHGMVFDPTETYLYSADLTANK 168 (365)
T ss_dssp -------EECSSTTCCEEEEEESSSCCEEEEEE--ECTT-CCEE-EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred -------EEecCCcceeccceeecCCceEEEEc--cCCC-CcCc-ceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCE
Confidence 3332 578899999 4321 1111 11111111345678999999999988876 4789
Q ss_pred EEEEeCC-CCCcccceecccCccccccCCceEEEEEecCCCcEEEEEec-CCeEEEEecC--cccccccccceeeeccCC
Q 010206 257 INLWNLE-ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLIDMR--QSALCDTHSKLFEEQEAP 332 (515)
Q Consensus 257 i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~-dg~i~~wd~~--~~~~~~~~~~~~~~~~~~ 332 (515)
|++||+. +++.. .+... ....|...+..++|+|++ +++++++. ++.|.+|++. +++.... ...+.. .+
T Consensus 169 v~~~~~~~~g~~~-~~~~~---~~~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~-~~~~~~--~~ 240 (365)
T 1jof_A 169 LWTHRKLASGEVE-LVGSV---DAPDPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYT-HHSFPL--IP 240 (365)
T ss_dssp EEEEEECTTSCEE-EEEEE---ECSSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEE-EEEEES--SC
T ss_pred EEEEEECCCCCEE-EeeeE---ecCCCCCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEc-cceEEc--CC
Confidence 9999997 44321 11000 111235668999999999 77776664 7899999875 3432100 000110 00
Q ss_pred Ccccccccccc------ceeEEE-EccCCCEEEEEcC--C-----eEEEEEeeCCCCCeee---Eeeecccccccccccc
Q 010206 333 GTRSFFTEIIA------SISDIK-FARNGRHILSRDY--M-----TLKLWDINMDSGPVAT---FQVHEHLRPKLCDLYE 395 (515)
Q Consensus 333 ~~~~~~~~~~~------~i~~~~-~s~~~~~l~s~~~--~-----~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~ 395 (515)
. -+.+|.. .+..++ |+|||++|++++. + .|.+|++...++.... ...+...
T Consensus 241 ~---~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~--------- 308 (365)
T 1jof_A 241 P---GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSG--------- 308 (365)
T ss_dssp T---TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCC---------
T ss_pred C---CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCC---------
Confidence 0 0112222 578999 9999999887542 3 8999999732443321 1111111
Q ss_pred CCCccceeeEEEcC---CCCEEEEecC-CCcEEEEecCCC
Q 010206 396 NDSIFDKFECCLSG---DGGRVATGSY-SNLFRVFGCSEG 431 (515)
Q Consensus 396 ~~~~~~v~~~~~s~---~~~~l~s~s~-dg~i~iw~~~~~ 431 (515)
...++|+| ||++|++++. ++.|.+|++...
T Consensus 309 ------~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 309 ------GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ------TTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred ------cccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 12789999 8999998876 489999998754
No 161
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.81 E-value=5.2e-18 Score=160.34 Aligned_cols=292 Identities=10% Similarity=0.062 Sum_probs=168.4
Q ss_pred EEECCCCCeEEeecC-CC--eEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEE
Q 010206 41 IEFDKSGDHLATGDR-GG--RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117 (515)
Q Consensus 41 v~~s~~g~~lasg~~-dg--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~ 117 (515)
.+|||||++||.++. +| .|.+||+.+++.. ....++. ..+..
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~-----------------------~lt~~~~------------~~~~~ 85 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT-----------------------QLTEGRG------------DNTFG 85 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE-----------------------ECCCSSC------------BCSSS
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE-----------------------EeeeCCC------------CCccc
Confidence 889999999998876 66 4888888766532 2223333 33446
Q ss_pred EEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCC
Q 010206 118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS 197 (515)
Q Consensus 118 l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 197 (515)
+.| +++++.|+.++.++.|++||+.+++...+....... +. .....++|+|+.+
T Consensus 86 ~~~--spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~--------~~-----~~~~~~~~dg~~l----------- 139 (388)
T 3pe7_A 86 GFL--SPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEW--------VG-----YGTWVANSDCTKL----------- 139 (388)
T ss_dssp CEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTE--------EE-----EEEEEECTTSSEE-----------
T ss_pred eEE--cCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhc--------cc-----ccceeECCCCCee-----------
Confidence 678 567889999999999999999998765544322100 00 0001123344332
Q ss_pred CCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCE-----EEEe-CCCcEEEEeCCCCCcccce
Q 010206 198 SFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET-----FISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 198 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
+. +.. ...+ +.+.... +... .+..|.+||+.+++..
T Consensus 140 -~~--------~~~---~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~--- 181 (388)
T 3pe7_A 140 -VG--------IEI---RRED-----------------------WVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST--- 181 (388)
T ss_dssp -EE--------EEE---EGGG-----------------------CCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE---
T ss_pred -cc--------ccc---cCcc-----------------------cccccccchhhhhhccCCcceEEEEECCCCceE---
Confidence 00 000 0000 0000000 0011 3467899999876432
Q ss_pred ecccCccccccCCceEEEEEec-CCCcEEEEEecC------CeEEEEecCcccccccccceeeeccCCCccccccccc--
Q 010206 272 VDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSK------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII-- 342 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p-~~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 342 (515)
.+..+...+..++|+| ++ +.|+....+ ..|.++|+..+... . +..+.
T Consensus 182 ------~l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-----~------------l~~~~~~ 237 (388)
T 3pe7_A 182 ------VILQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTNMR-----K------------VKTHAEG 237 (388)
T ss_dssp ------EEEEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCCCE-----E------------SCCCCTT
T ss_pred ------EeecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCceE-----E------------eeeCCCC
Confidence 2334566789999999 98 777776653 36777777654321 1 11111
Q ss_pred cceeEEEEccCCCEEEEEc--C-C---eEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEE
Q 010206 343 ASISDIKFARNGRHILSRD--Y-M---TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT 416 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~~--~-~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 416 (515)
..+..+.|+|||+.|+..+ . + .|.+||+.+ ++.. .+........ .. ......+|+|||+.|+.
T Consensus 238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-g~~~-~l~~~~~~~~-~~--------~~~~~~~~spdg~~l~~ 306 (388)
T 3pe7_A 238 ESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPET-LENR-QLTSMPACSH-LM--------SNYDGSLMVGDGSDAPV 306 (388)
T ss_dssp EEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTT-CCEE-EEEEECCEEE-EE--------ECTTSSEEEEEECCC--
T ss_pred cccccceECCCCCEEEEEecCCCCCcceEEEEecCC-CceE-EEEcCCCcee-ee--------ecCCCCeEccCCCccee
Confidence 2477889999999776532 1 2 399999985 4422 2211111000 00 00013579999998875
Q ss_pred e---------cCCCcEEEEecCCCCcceeeeccCCC-----------ceeeEEECCCCCeeEeecC-CCeEEE
Q 010206 417 G---------SYSNLFRVFGCSEGSAESTTLEASKN-----------PMRRQVQTPSRPSRPLGSL-SGVVRR 468 (515)
Q Consensus 417 ~---------s~dg~i~iw~~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~s~~~-d~~v~l 468 (515)
. ..+..|++||+.++. . ..+..+.. .+..++|+|+|+.|+..+. ++...|
T Consensus 307 ~~~~~~~~~~~~~~~i~~~d~~~~~-~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l 377 (388)
T 3pe7_A 307 DVQDDSGYKIENDPFLYVFNMKNGT-Q-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPAL 377 (388)
T ss_dssp ----------CCCCEEEEEETTTTE-E-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEE
T ss_pred EeeeccccccCCCCEEEEEeccCCc-e-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeE
Confidence 3 456789999998763 2 34555544 5778899999998876653 554444
No 162
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.78 E-value=4.6e-17 Score=151.36 Aligned_cols=250 Identities=8% Similarity=0.060 Sum_probs=143.0
Q ss_pred CeEEEEecCCCCEEEE-e-CCCcEEEEeCCCCCcccceecccCcccccc----CCceEEEEEecCCCcEEEEEecC----
Q 010206 236 HINSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIVDVKPANMEDL----TEVITSAEFHPTHCNMLAYSSSK---- 305 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~i~~i~~~p~~~~~l~~~~~d---- 305 (515)
.+..++|+|+++.++. + .++.|.+||+.+++....+ ..... ...+..++|+|++ +.+++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~------~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~ 116 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA------NLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRL 116 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE------ESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEEC
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE------EcccccccccccccceEECCCC-CEEEEEccccccc
Confidence 3567899999986654 4 6899999999876543221 11100 2236789999999 788887765
Q ss_pred --------CeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCe
Q 010206 306 --------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPV 377 (515)
Q Consensus 306 --------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~ 377 (515)
+.|.+||+.+++.... ...+. +...+.+++|+|+|+ +++++ +.|.+||+.+ ++..
T Consensus 117 ~~~~~~~~~~i~~~d~~~~~~~~~-~~~~~-------------~~~~~~~~~~s~dg~-l~~~~-~~i~~~d~~~-~~~~ 179 (349)
T 1jmx_B 117 NDHYVVKPPRLEVFSTADGLEAKP-VRTFP-------------MPRQVYLMRAADDGS-LYVAG-PDIYKMDVKT-GKYT 179 (349)
T ss_dssp SSCEEECCCEEEEEEGGGGGGBCC-SEEEE-------------CCSSCCCEEECTTSC-EEEES-SSEEEECTTT-CCEE
T ss_pred ccccccCCCeEEEEECCCccccce-eeecc-------------CCCcccceeECCCCc-EEEcc-CcEEEEeCCC-Ccee
Confidence 8999999988653211 11221 113578899999999 55543 3599999986 6665
Q ss_pred eeEeeeccccccc-----cccccCC----CccceeeEEEcCCCCEEEEecCCC-cEEEEecCCCCcceeeeccCCCceee
Q 010206 378 ATFQVHEHLRPKL-----CDLYEND----SIFDKFECCLSGDGGRVATGSYSN-LFRVFGCSEGSAESTTLEASKNPMRR 447 (515)
Q Consensus 378 ~~~~~~~~~~~~~-----~~~~~~~----~~~~v~~~~~s~~~~~l~s~s~dg-~i~iw~~~~~~~~~~~~~~~~~~v~~ 447 (515)
..+..+....... ....... .......+++++++.......... .+..++..++......+..+...+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (349)
T 1jmx_B 180 VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFT 259 (349)
T ss_dssp EEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEE
T ss_pred ccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCccee
Confidence 5554322000000 0000000 000122466666543221111111 12224555443322333345567789
Q ss_pred EEECC-CCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEc-CCcEEEEeC
Q 010206 448 QVQTP-SRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYYA 515 (515)
Q Consensus 448 ~~~~~-~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~-~~~~~i~~~ 515 (515)
++++| ++++++++ ++.|.+++..... .. ..+.....+.+++|+||+++|++++ ++.+.+|+.
T Consensus 260 ~~~sp~dg~~l~~~--~~~v~~~d~~~~~---~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~ 323 (349)
T 1jmx_B 260 GLRSPKDPNQIYGV--LNRLAKYDLKQRK---LI-KAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNP 323 (349)
T ss_dssp EEECSSCTTEEEEE--ESEEEEEETTTTE---EE-EEEECSSCCCEEEECSSSSCEEEESBSSEEEEEET
T ss_pred eEecCCCCCEEEEE--cCeEEEEECccCe---EE-EEEcCCCCccceEECCCCCEEEEecCCCeEEEEec
Confidence 99999 99999888 7888884322111 10 1112245678999999999888765 455888863
No 163
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.77 E-value=3.4e-17 Score=167.77 Aligned_cols=282 Identities=8% Similarity=-0.008 Sum_probs=169.6
Q ss_pred ceEEEEECCCCCeEEeecC---------CCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccc
Q 010206 37 IISAIEFDKSGDHLATGDR---------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (515)
Q Consensus 37 ~v~~v~~s~~g~~lasg~~---------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (515)
.|.+++|||||++||+++. ++.|++||+.+++.... ..+ .
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~---------------------~~l---~------- 109 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG---------------------NEL---P------- 109 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS---------------------SCC---C-------
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc---------------------eec---C-------
Confidence 3899999999999998876 68999999987763100 001 0
Q ss_pred cccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccc
Q 010206 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (515)
Q Consensus 108 ~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~ 187 (515)
..+..++| ++||+.|+.+. |+.|++|++.+++...+..... . ..+
T Consensus 110 -----~~~~~~~~--SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~-~------~~v-------------------- 154 (719)
T 1z68_A 110 -----RPIQYLCW--SPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGR-E------NKI-------------------- 154 (719)
T ss_dssp -----SSBCCEEE--CSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCB-T------TTE--------------------
T ss_pred -----cccccceE--CCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCC-c------CCe--------------------
Confidence 34788999 56788888875 7899999998876543321100 0 000
Q ss_pred cccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCc---------CCeEEEEecCCCCEEEEe-CC---
Q 010206 188 RNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHD---------YHINSISNNSDGETFISA-DD--- 254 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~s~-~d--- 254 (515)
..++. ....+++|+|||+.|+++ .|
T Consensus 155 ------------------------------------------~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~ 192 (719)
T 1z68_A 155 ------------------------------------------FNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTD 192 (719)
T ss_dssp ------------------------------------------EESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTT
T ss_pred ------------------------------------------EcccccceeeeecccCcccEEECCCCCEEEEEEECCCC
Confidence 00111 112355666666666654 22
Q ss_pred -------------------------------CcEEEEeCCCCCcc--cceecccCccccccCCceEEEEEecCCCcEEEE
Q 010206 255 -------------------------------LRINLWNLEISNQS--FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY 301 (515)
Q Consensus 255 -------------------------------~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~ 301 (515)
..|++||+.+++.. ..+ ..+..+.+|...+.+++|+||+ +++++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~SpD~-~~~~~ 269 (719)
T 1z68_A 193 IPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEV--PVPAMIASSDYYFSWLTWVTDE-RVCLQ 269 (719)
T ss_dssp SCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEEC--CCCHHHHTSCEEEEEEEESSSS-EEEEE
T ss_pred CceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEc--cCCccCCCCcceEEEeEEeCCC-eEEEE
Confidence 27889999865431 111 0112345678889999999997 77776
Q ss_pred EecC----CeEEEEe----cCcccccccccceeeeccCCCcccccccccccee-----EEEEccCCCEEEE--Ec-CC--
Q 010206 302 SSSK----GSIRLID----MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS-----DIKFARNGRHILS--RD-YM-- 363 (515)
Q Consensus 302 ~~~d----g~i~~wd----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~s~~~~~l~s--~~-~~-- 363 (515)
.... ..|.+|| +.+++... .+.. ...+|...+. .+.|+|||+.++. .. ++
T Consensus 270 ~~~~~~~~~~l~~~d~~~~~~~g~~~~----~~~~--------~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~ 337 (719)
T 1z68_A 270 WLKRVQNVSVLSICDFREDWQTWDCPK----TQEH--------IEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYK 337 (719)
T ss_dssp EEESSTTEEEEEEEEECSSSSSEECCG----GGEE--------EEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCE
T ss_pred EeccccCeEEEEEEcccCCCCCCceEE----EEec--------ccccCCceEccccCCccEECCCCCeEEEEEEccCCce
Confidence 5433 2488899 77665321 1100 0012334454 7899999996654 32 23
Q ss_pred eEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecC-----CCcEEEEecCC--CCccee
Q 010206 364 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-----SNLFRVFGCSE--GSAEST 436 (515)
Q Consensus 364 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~-----dg~i~iw~~~~--~~~~~~ 436 (515)
.|.+||+.. ++ ...+..+... +..+.++ +++.|+..+. ++..++|.+.. +.....
T Consensus 338 ~l~~~~~~~-~~-~~~lt~~~~~---------------v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 399 (719)
T 1z68_A 338 HIHYIKDTV-EN-AIQITSGKWE---------------AINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKK 399 (719)
T ss_dssp EEEEESSCS-TT-CEECSCSSSC---------------EEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEE
T ss_pred EEEEEECCC-Cc-eEecccCceE---------------EEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCce
Confidence 566677653 33 3344322211 3356666 7777765554 47888998764 211112
Q ss_pred ee----ccCCCceeeEEECCCCCeeEe
Q 010206 437 TL----EASKNPMRRQVQTPSRPSRPL 459 (515)
Q Consensus 437 ~~----~~~~~~v~~~~~~~~~~~l~s 459 (515)
.+ .+|...+..+.|+|++++++.
T Consensus 400 ~l~~~~~~~~~~~~~~~~s~dg~~l~~ 426 (719)
T 1z68_A 400 CVTCHLRKERCQYYTASFSDYAKYYAL 426 (719)
T ss_dssp ESSTTTTTTTBCBEEEEECGGGSSEEE
T ss_pred eccCccCCCCCceEEEEECCCCCEEEE
Confidence 22 235567778999999987764
No 164
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.76 E-value=1.7e-16 Score=160.97 Aligned_cols=205 Identities=9% Similarity=-0.004 Sum_probs=127.9
Q ss_pred CcCCeEEEEecCCCCEEEEe-CC----------CcEEEEeCCCC-----CcccceecccCcccc-ccCCceEEEEEecCC
Q 010206 233 HDYHINSISNNSDGETFISA-DD----------LRINLWNLEIS-----NQSFNIVDVKPANME-DLTEVITSAEFHPTH 295 (515)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~s~-~d----------~~i~iwd~~~~-----~~~~~~~~~~~~~~~-~~~~~i~~i~~~p~~ 295 (515)
|...+.+++|+|||+.|+++ .+ ..|++||+.+. .... .+. .+...+..++|+|||
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--------~l~~~~~~~~~~~~~SpDG 199 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR--------ELSDDAHRFVTGPRLSPDG 199 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE--------ESSCSCSSEECCCEECTTS
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee--------EEEecCCCcccCceECCCC
Confidence 44567889999999999887 44 58999999862 2221 233 455678889999999
Q ss_pred CcEEEEEecC--------CeEEEEecC-cccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-C--
Q 010206 296 CNMLAYSSSK--------GSIRLIDMR-QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-M-- 363 (515)
Q Consensus 296 ~~~l~~~~~d--------g~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~-- 363 (515)
+.|+.++.+ ..|.+||+. ++... . ... +..+|...+..+.|+|||+++++++. +
T Consensus 200 -~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~-~-~~~-----------l~~~~~~~~~~~~~spdg~l~~~~~~~~~~ 265 (662)
T 3azo_A 200 -RQAVWLAWDHPRMPWEGTELKTARVTEDGRFA-D-TRT-----------LLGGPEEAIAQAEWAPDGSLIVATDRTGWW 265 (662)
T ss_dssp -SEEEEEEECTTCCTTTCEEEEEEEECTTSCEE-E-EEE-----------EEEETTBCEEEEEECTTSCEEEEECTTSSC
T ss_pred -CEEEEEECCCCCCCCCCcEEEEEEECCCCccc-c-cEE-----------eCCCCCceEcceEECCCCeEEEEECCCCCe
Confidence 888877755 379999998 45210 0 011 12223467899999999997777654 6
Q ss_pred eEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCC
Q 010206 364 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKN 443 (515)
Q Consensus 364 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~ 443 (515)
.|.+||+.. ++.......+.... ...-..++..++|+|+++++++++. +.++||.+.........+..+..
T Consensus 266 ~l~~~~~~~-~~~~~l~~~~~~~~-------~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~ 336 (662)
T 3azo_A 266 NLHRVDPAT-GAATQLCRREEEFA-------GPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDAAGPWT 336 (662)
T ss_dssp EEEEECTTT-CCEEESSCCSSBSS-------CCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEECCSSCC
T ss_pred EEEEEECCC-Cceeeccccccccc-------CccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEecCCCC
Confidence 555555543 33322222111110 0000011347899999999999998 99999944322223466777777
Q ss_pred ceeeE-EECCCCCeeEeecCCCeEEE
Q 010206 444 PMRRQ-VQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 444 ~v~~~-~~~~~~~~l~s~~~d~~v~l 468 (515)
.+..+ .+.++.-++++++.+....+
T Consensus 337 ~~~~~~s~~~~~~~~~~~~~~~~~~i 362 (662)
T 3azo_A 337 EWAATLTVSGTRAVGVAASPRTAYEV 362 (662)
T ss_dssp EEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred eEEEEEecCCCEEEEEEcCCCCCCEE
Confidence 77766 55444444555566654444
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.75 E-value=4.8e-16 Score=159.23 Aligned_cols=213 Identities=11% Similarity=0.055 Sum_probs=124.0
Q ss_pred EEEEecCCCCEEEEe-CC---------CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCe
Q 010206 238 NSISNNSDGETFISA-DD---------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 307 (515)
Q Consensus 238 ~~~~~~~~~~~l~s~-~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~ 307 (515)
.+++|||||+.|+.+ .+ +.+.+||+.+++.. .+..+...+..++||||| +.|+.+ .++.
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~---------~l~~~~~~~~~~~~SPdG-~~la~~-~~~~ 133 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI---------TEERIPNNTQWVTWSPVG-HKLAYV-WNND 133 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC---------CSSCCCTTEEEEEECSST-TCEEEE-ETTE
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE---------EcccCCCcceeeEECCCC-CEEEEE-ECCe
Confidence 457889999998887 43 66789999876532 345567789999999999 788877 5789
Q ss_pred EEEEecCcccccccccceeeeccCCCccccccccc---------cceeEEEEccCCCEEEEEc-C-CeEEEEEeeCCCCC
Q 010206 308 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII---------ASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGP 376 (515)
Q Consensus 308 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~~ 376 (515)
|++||+.++.... .+..+.. ...+.++. +....+.|||||+.|+..+ + +.+.+|++......
T Consensus 134 i~~~~~~~~~~~~---lt~~g~~----~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~ 206 (740)
T 4a5s_A 134 IYVKIEPNLPSYR---ITWTGKE----DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE 206 (740)
T ss_dssp EEEESSTTSCCEE---CCSCCBT----TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCST
T ss_pred EEEEECCCCceEE---EcCCCCc----cceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCC
Confidence 9999998775321 0111110 01122222 2234589999999999863 2 54555554210000
Q ss_pred -----------------------eeeEeeec---cccccccccccC----CCccceeeEEEcCCCCEEEEec----CCCc
Q 010206 377 -----------------------VATFQVHE---HLRPKLCDLYEN----DSIFDKFECCLSGDGGRVATGS----YSNL 422 (515)
Q Consensus 377 -----------------------~~~~~~~~---~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~s~s----~dg~ 422 (515)
+..+.... ........+... ..-.-+..++|+|||+.++... .+..
T Consensus 207 ~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~ 286 (740)
T 4a5s_A 207 SLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSV 286 (740)
T ss_dssp TCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEE
T ss_pred CCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEE
Confidence 00000000 000000000000 0111256899999999766543 3447
Q ss_pred EEEEecCCCC----cc-eeee--ccCCCcee-----eEEECCCCCeeE-eec-CCCeEEE
Q 010206 423 FRVFGCSEGS----AE-STTL--EASKNPMR-----RQVQTPSRPSRP-LGS-LSGVVRR 468 (515)
Q Consensus 423 i~iw~~~~~~----~~-~~~~--~~~~~~v~-----~~~~~~~~~~l~-s~~-~d~~v~l 468 (515)
|++||+.+++ +. ...+ +.|...+. ...|+|||+.++ ..+ .+|.-.|
T Consensus 287 i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l 346 (740)
T 4a5s_A 287 MDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHI 346 (740)
T ss_dssp EEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEE
T ss_pred EEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEE
Confidence 9999999875 22 1222 45555444 788999999876 554 4554443
No 166
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.75 E-value=6e-17 Score=153.46 Aligned_cols=292 Identities=10% Similarity=0.059 Sum_probs=182.3
Q ss_pred cccceEEEEECCCCCeEEeecCC---CeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 34 EVDIISAIEFDKSGDHLATGDRG---GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~d---g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
|...+.+++|||||++||..... ..|.+|++.+++.. .+..+..
T Consensus 34 ~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~------------------------~l~~~~~--------- 80 (396)
T 3c5m_A 34 HRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV------------------------QLTEGKG--------- 80 (396)
T ss_dssp ECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE------------------------ECCCSSC---------
T ss_pred cceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE------------------------EeecCCC---------
Confidence 33447889999999998876432 36888888766531 1111110
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
.....+.| ++++++|+.++.++.|.+||+.+++...+.... ..++++|+.+
T Consensus 81 --~~~~~~~~--spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~---------------------~~~~~~g~~l---- 131 (396)
T 3c5m_A 81 --DNTFGGFI--STDERAFFYVKNELNLMKVDLETLEEQVIYTVD---------------------EEWKGYGTWV---- 131 (396)
T ss_dssp --BCTTTCEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEEECC---------------------TTEEEEEEEE----
T ss_pred --CccccceE--CCCCCEEEEEEcCCcEEEEECCCCCcEEEEecc---------------------cccCCCCCEE----
Confidence 11233678 567889999999999999999988766554422 1255666655
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe------CCCcEEEEeCCC
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA------DDLRINLWNLEI 264 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~------~d~~i~iwd~~~ 264 (515)
+....+....+|. ..+.|+|+++.++.. .+..|.+||+.+
T Consensus 132 --------~~~~~~~~~~~~~--------------------------~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~ 177 (396)
T 3c5m_A 132 --------ANSDCTKLVGIEI--------------------------LKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIET 177 (396)
T ss_dssp --------ECTTSSEEEEEEE--------------------------EGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTT
T ss_pred --------EeccCCccccccc--------------------------cccccCCCCcceeeeeeccCCCcceEEEEECCC
Confidence 4333333333222 123577888877642 356899999986
Q ss_pred CCcccceecccCccccccCCceEEEEEec-CCCcEEEEEecC------CeEEEEecCcccccccccceeeeccCCCcccc
Q 010206 265 SNQSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSK------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSF 337 (515)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p-~~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (515)
++.. .+..+...+..+.|+| ++ ..|+..+.+ ..|.+||+..+... .+.
T Consensus 178 g~~~---------~~~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-----~l~---------- 232 (396)
T 3c5m_A 178 GELE---------VIHQDTAWLGHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDGSNVR-----KIK---------- 232 (396)
T ss_dssp CCEE---------EEEEESSCEEEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTSCCCE-----ESS----------
T ss_pred CcEE---------eeccCCcccccceECCCCC-CEEEEEecCCCCCCCceEEEEECCCCcee-----Eee----------
Confidence 5532 2223566789999999 67 666665543 35888887654321 000
Q ss_pred cccc-ccceeEEEEccCCCEEEEEc-C-----CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcC-
Q 010206 338 FTEI-IASISDIKFARNGRHILSRD-Y-----MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG- 409 (515)
Q Consensus 338 ~~~~-~~~i~~~~~s~~~~~l~s~~-~-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~- 409 (515)
... ...+..+.|+|+|++|+..+ + +.|++||+.+ ++.. .+..... . .+.|+|
T Consensus 233 -~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-g~~~-~l~~~~~----------------~-~~~~s~~ 292 (396)
T 3c5m_A 233 -EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET-LENE-EVMVMPP----------------C-SHLMSNF 292 (396)
T ss_dssp -CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT-CCEE-EEEECCS----------------E-EEEEECS
T ss_pred -ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCC-CCeE-EeeeCCC----------------C-CCCccCC
Confidence 100 13478899999999877642 2 3499999875 4332 2221111 1 378999
Q ss_pred CCCEEEEec----------------CCCcEEEEecCCCCcceeeeccCCC-----------ceeeEEECCCCCeeEeecC
Q 010206 410 DGGRVATGS----------------YSNLFRVFGCSEGSAESTTLEASKN-----------PMRRQVQTPSRPSRPLGSL 462 (515)
Q Consensus 410 ~~~~l~s~s----------------~dg~i~iw~~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~s~~~ 462 (515)
||++|++++ .++.|++||+.++.. ..+..+.. .+..+.|+|+++.|+..+.
T Consensus 293 dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~ 370 (396)
T 3c5m_A 293 DGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA--QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSD 370 (396)
T ss_dssp SSSEEEEEECCC----------CCCCCCEEEEEETTTTBC--CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred CCceEEEecCCcceeeccccccccCCCCcEEEEecccCce--EEccCCCCccccccccccCCCCCceEccCCCeEEEEec
Confidence 999888754 347899999987632 34444443 2566889999998877654
Q ss_pred -CCeEEE
Q 010206 463 -SGVVRR 468 (515)
Q Consensus 463 -d~~v~l 468 (515)
++...+
T Consensus 371 ~~~~~~l 377 (396)
T 3c5m_A 371 FEGVPAI 377 (396)
T ss_dssp TTSSCEE
T ss_pred CCCCceE
Confidence 444444
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.74 E-value=3.1e-15 Score=139.04 Aligned_cols=280 Identities=9% Similarity=0.014 Sum_probs=166.7
Q ss_pred EEEEeecCCCcEEEeee----------CCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcc
Q 010206 117 KIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (515)
Q Consensus 117 ~l~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l 186 (515)
.++| ++++++++++. .+++|.+||..+.+............ . . ...+..++++|||+.+
T Consensus 54 ~i~~--spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~--~-~------g~~p~~i~~spdg~~l 122 (361)
T 2oiz_A 54 HVQV--SNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV--Q-G------LNYDGLFRQTTDGKFI 122 (361)
T ss_dssp EEEE--CTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC--C-B------CCCGGGEEECTTSSEE
T ss_pred ceEE--CCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc--c-c------CCCcceEEECCCCCEE
Confidence 7888 56788888876 36789999999887665544321000 0 0 0112278999999998
Q ss_pred ccccccCCCCCCCCCC--CcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCC-CEEEEe-CCCcEEEEeC
Q 010206 187 ERNFGCASNDSSFPPG--GVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNL 262 (515)
Q Consensus 187 ~~~~~~~~~~~~~~~~--~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~ 262 (515)
+++. .++.|.+|| +...+ .....+ .. .....+.+.|++ ..+++. .||.+.+|+.
T Consensus 123 ------------~v~n~~~~~~v~v~d--~~~~~------~~~~~i-~~-~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~ 180 (361)
T 2oiz_A 123 ------------VLQNASPATSIGIVD--VAKGD------YVEDVT-AA-AGCWSVIPQPNRPRSFMTICGDGGLLTINL 180 (361)
T ss_dssp ------------EEEEESSSEEEEEEE--TTTTE------EEEEEG-GG-TTEEEEEECTTSSSEEEEEETTSSEEEEEE
T ss_pred ------------EEECCCCCCeEEEEE--CCCCc------EEEEEe-cC-CCcceeEEcCCCCeeEEEECCCCcEEEEEE
Confidence 6554 368999999 33221 111100 11 112234566765 455554 7889999988
Q ss_pred CCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccc
Q 010206 263 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 342 (515)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (515)
............ ...+.....+ ..+.++|++ ..++..+.++.+.++|+....... ...+...... ........
T Consensus 181 ~~~g~~~~~~~~-~~~~~~~~~~-~~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~~--~~~~~~~~~~--~~~~~~~p 253 (361)
T 2oiz_A 181 GEDGKVASQSRS-KQMFSVKDDP-IFIAPALDK-DKAHFVSYYGNVYSADFSGDEVKV--DGPWSLLNDE--DKAKNWVP 253 (361)
T ss_dssp CTTSSEEEEEEC-CCCSCTTTSC-BCSCCEECS-SEEEEEBTTSEEEEEECSSSSCEE--EEEEESCCHH--HHHTTCEE
T ss_pred CCCCcEeeeccc-cceEcCCCCc-eEEEecccC-CEEEEEeCCCeEEEEEecCCCcee--cccccccCcc--cccccccc
Confidence 653322211000 0011112222 133346777 566777788999999987543210 1111100000 00000000
Q ss_pred cceeEEEEccCCCEEEEE-c-----------CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCC
Q 010206 343 ASISDIKFARNGRHILSR-D-----------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 410 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~-~-----------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 410 (515)
.....++|+|+++.++++ . .+.|.+||+.+ .+.+.++..+. . ..++|+||
T Consensus 254 ~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t-~~~v~~i~~~~-p----------------~~ia~spd 315 (361)
T 2oiz_A 254 GGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT-KQRVARIPGRD-A----------------LSMTIDQQ 315 (361)
T ss_dssp CCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT-TEEEEEEECTT-C----------------CEEEEETT
T ss_pred CCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC-CcEEEEEecCC-e----------------eEEEECCC
Confidence 122237899998877764 2 14899999987 77788877655 2 28999999
Q ss_pred CCEEEEecCCCcEEEEecCCCC-cceeeeccCCCceeeEEECCCCC
Q 010206 411 GGRVATGSYSNLFRVFGCSEGS-AESTTLEASKNPMRRQVQTPSRP 455 (515)
Q Consensus 411 ~~~l~s~s~dg~i~iw~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~ 455 (515)
|++|++++. +.|.+||..++. +++..+..+......++++|+|+
T Consensus 316 g~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 316 RNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp TTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 999998887 999999999862 23355556667778899999975
No 168
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.73 E-value=1.8e-16 Score=149.73 Aligned_cols=222 Identities=8% Similarity=0.042 Sum_probs=133.8
Q ss_pred EEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEE--EEecCCCcEEEEE------------
Q 010206 238 NSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSA--EFHPTHCNMLAYS------------ 302 (515)
Q Consensus 238 ~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i--~~~p~~~~~l~~~------------ 302 (515)
..+.|+||++.|+.+ .++.|++||+.+++... + ...+...+... .++|++ .+++..
T Consensus 84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~-~-------~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~ 154 (388)
T 3pe7_A 84 FGGFLSPDDDALFYVKDGRNLMRVDLATLEENV-V-------YQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTD 154 (388)
T ss_dssp SSCEECTTSSEEEEEETTTEEEEEETTTCCEEE-E-------EECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCS
T ss_pred cceEEcCCCCEEEEEeCCCeEEEEECCCCccee-e-------eechhhcccccceeECCCC-CeeccccccCcccccccc
Confidence 345799999999988 78899999998765432 1 12233434333 348888 666632
Q ss_pred ----------ecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEcc-CCCEEEEEcC-------Ce
Q 010206 303 ----------SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY-------MT 364 (515)
Q Consensus 303 ----------~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~-------~~ 364 (515)
..+..|.+||+.+++.. . +..+...+..+.|+| ||+.|+.... ..
T Consensus 155 ~~~~~~~~~~~~~~~l~~~d~~~g~~~-----~------------l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~ 217 (388)
T 3pe7_A 155 WKKFHEFYFTKPCCRLMRVDLKTGEST-----V------------ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDAR 217 (388)
T ss_dssp HHHHHHHGGGCCCEEEEEEETTTCCEE-----E------------EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCS
T ss_pred cchhhhhhccCCcceEEEEECCCCceE-----E------------eecCCccccccEECCCCCCEEEEEEecCCCCCcce
Confidence 23467999999887531 1 122335688999999 9998886542 25
Q ss_pred EEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecC-C----CcEEEEecCCCCcce-eee
Q 010206 365 LKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-S----NLFRVFGCSEGSAES-TTL 438 (515)
Q Consensus 365 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~-d----g~i~iw~~~~~~~~~-~~~ 438 (515)
|.++|.. +.....+..+... ..+..++|+|||+.|+..+. + ..|++||+.+++... ..+
T Consensus 218 l~~~d~~--~~~~~~l~~~~~~-------------~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 282 (388)
T 3pe7_A 218 MWLINED--GTNMRKVKTHAEG-------------ESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSM 282 (388)
T ss_dssp EEEEETT--SCCCEESCCCCTT-------------EEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEE
T ss_pred EEEEeCC--CCceEEeeeCCCC-------------cccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcC
Confidence 6666665 3333333322210 01346899999998765443 2 239999999875322 223
Q ss_pred ccCCC---ceeeEEECCCCCeeEee---------cCCCeEEEec--CCCCCccccCCccccccC-----------CeeEE
Q 010206 439 EASKN---PMRRQVQTPSRPSRPLG---------SLSGVVRRVK--GADNSALDANGNAFDFSM-----------KLLHL 493 (515)
Q Consensus 439 ~~~~~---~v~~~~~~~~~~~l~s~---------~~d~~v~l~~--~~~~~~~~~~~~~~~~~~-----------~i~~~ 493 (515)
.++.. ......|+|+|+.|+.. ..+..|.+++ +.+.. ....+.. .+.++
T Consensus 283 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~------~l~~~~~~~~~~~~~~~~~~~~~ 356 (388)
T 3pe7_A 283 PACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH------RVARHDTSWKVFEGDRQVTHPHP 356 (388)
T ss_dssp CCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE------EEEECCCCCCCBTTBSSTTCCCC
T ss_pred CCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE------EeccccCcccccccccccCCCCc
Confidence 32110 12234789999988754 4455777732 22211 1111222 47889
Q ss_pred EEcCCCCEEEEEc
Q 010206 494 AWHPSENSIACAA 506 (515)
Q Consensus 494 ~~s~~~~~la~~~ 506 (515)
+|+|||++|++++
T Consensus 357 ~~spDg~~l~~~s 369 (388)
T 3pe7_A 357 SFTPDDKQILFTS 369 (388)
T ss_dssp EECTTSSEEEEEE
T ss_pred cCCCCCCEEEEEe
Confidence 9999999999766
No 169
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.73 E-value=1.1e-14 Score=131.25 Aligned_cols=268 Identities=10% Similarity=0.161 Sum_probs=172.6
Q ss_pred ccccchhhhhcccccccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceee
Q 010206 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK 93 (515)
Q Consensus 14 ~~~w~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (515)
+..|.+...|+... ...++-..+.+++++++|+++++...++.|.+|+....... .+. ..
T Consensus 10 ~~~~~~~~~~g~~g--~~~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~-----~~~-------------~~ 69 (286)
T 1q7f_A 10 RQRMIYHCKFGEFG--VMEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKF-----QFG-------------EC 69 (286)
T ss_dssp CEEECEEEEECCBS--SSTTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEE-----EEC-------------CB
T ss_pred cceeEEEEeccCCC--CCCCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEE-----Eec-------------cc
Confidence 33455555566443 34567788999999999998888888999999997632210 000 00
Q ss_pred eecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeC-CCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCC
Q 010206 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTN-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (515)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (515)
....++. ..+..+++.+ +++.++++... ++.|.+||. +++......
T Consensus 70 ~~~~~~~------------~~p~~i~~~~-~~g~l~v~~~~~~~~i~~~d~-~g~~~~~~~------------------- 116 (286)
T 1q7f_A 70 GKRDSQL------------LYPNRVAVVR-NSGDIIVTERSPTHQIQIYNQ-YGQFVRKFG------------------- 116 (286)
T ss_dssp SSSTTCB------------SSEEEEEEET-TTTEEEEEECGGGCEEEEECT-TSCEEEEEC-------------------
T ss_pred CCCcccc------------cCceEEEEEc-CCCeEEEEcCCCCCEEEEECC-CCcEEEEec-------------------
Confidence 0001122 4578888842 34444444433 789999983 443222110
Q ss_pred cCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe
Q 010206 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 252 (515)
Q Consensus 173 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 252 (515)
..+...+.+++++++++++++.
T Consensus 117 ----------------------------------------------------------~~~~~~~~~i~~~~~g~l~v~~ 138 (286)
T 1q7f_A 117 ----------------------------------------------------------ATILQHPRGVTVDNKGRIIVVE 138 (286)
T ss_dssp ----------------------------------------------------------TTTCSCEEEEEECTTSCEEEEE
T ss_pred ----------------------------------------------------------CccCCCceEEEEeCCCCEEEEE
Confidence 1122456889999999988887
Q ss_pred -CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccC
Q 010206 253 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 331 (515)
Q Consensus 253 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 331 (515)
.++.|.+||.. ++.... + ....+...+..++++|++ +++++...++.|++||.... .. ..+..
T Consensus 139 ~~~~~i~~~~~~-g~~~~~-~-----~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~-~~----~~~~~--- 202 (286)
T 1q7f_A 139 CKVMRVIIFDQN-GNVLHK-F-----GCSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEGQ-YL----RQIGG--- 202 (286)
T ss_dssp TTTTEEEEECTT-SCEEEE-E-----ECTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTCC-EE----EEESC---
T ss_pred CCCCEEEEEcCC-CCEEEE-e-----CCCCccCCcEEEEECCCC-CEEEEECCCCEEEEEcCCCC-EE----EEEcc---
Confidence 68999999965 322211 1 111344568999999998 78887778999999997432 21 11211
Q ss_pred CCccccccccccceeEEEEccCCCEEEEEcC-C-eEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcC
Q 010206 332 PGTRSFFTEIIASISDIKFARNGRHILSRDY-M-TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 409 (515)
Q Consensus 332 ~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 409 (515)
.++...+..++++++|+++++... + .|.+||.. ++.+..+..+.... ....++++|
T Consensus 203 -------~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~--g~~~~~~~~~~~~~-------------~~~~i~~~~ 260 (286)
T 1q7f_A 203 -------EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--GQLISALESKVKHA-------------QCFDVALMD 260 (286)
T ss_dssp -------TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--SCEEEEEEESSCCS-------------CEEEEEEET
T ss_pred -------CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC--CCEEEEEcccCCCC-------------cceeEEECC
Confidence 111245789999999998888754 5 99999954 66666665543211 134799999
Q ss_pred CCCEEEEecCCCcEEEEecCCC
Q 010206 410 DGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 410 ~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
+|+++++ +.|++|++|++...
T Consensus 261 ~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 261 DGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp TTEEEEE-ETTTEEEEEECSCC
T ss_pred CCcEEEE-CCCCeEEEEEcccc
Confidence 9987777 56899999998653
No 170
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.72 E-value=5.6e-16 Score=144.82 Aligned_cols=260 Identities=10% Similarity=0.010 Sum_probs=155.4
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEcc-cCcccCccccCcccccccccCCccceeeeecccCCCccccccccccc
Q 010206 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERT-DTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (515)
....+..++|+|||++|++++.+ .|.+|++. +++.. .......+
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~---------------------~~~~~~~~------------- 82 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIV---------------------HEASHPIG------------- 82 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEE---------------------EEEEEECC-------------
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEE---------------------EeeEeecC-------------
Confidence 33468899999999999998887 89999986 54421 00011101
Q ss_pred ceeEEEEEeecCCCcE--EEeee-------------CCCeEEEEEcc-CCeeEEEeeccCCcccCCCCCCccCCCCcCCC
Q 010206 113 EKINKIRWCQSANSAL--YLLST-------------NDKTIKLWKVQ-EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIP 176 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~--l~~~~-------------~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 176 (515)
+.+..++| ++++++ ++++. .++++.+|++. +++........... ....+ ..
T Consensus 83 g~~~~~~~--spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~----~~~~~-------~~ 149 (365)
T 1jof_A 83 GHPRANDA--DTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQ----ENTGI-------HG 149 (365)
T ss_dssp SSGGGGCT--TSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECC----TTCCE-------EE
T ss_pred CCCccEEE--CCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeC----CCCcc-------eE
Confidence 11333566 556764 44443 68999999997 45544322210000 01112 27
Q ss_pred ceeecCCCccccccccCCCCCCCCCC-CcccEEeeeeeecccccccccceeeeee-ccCcCCeEEEEecCCCCEEEEe--
Q 010206 177 KSYMANGGCGERNFGCASNDSSFPPG-GVSSLRLPVVVVTSQETNLVAGCRRIYA-HAHDYHINSISNNSDGETFISA-- 252 (515)
Q Consensus 177 ~~~~~~g~~l~~~~~~~~~~~~~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~-- 252 (515)
++|+|||+.+ ++++ .++.|.+|+ +.. .+.. ....... ..|...+..++|+|++++|+++
T Consensus 150 ~~~spdG~~l------------~~~~~~~~~v~~~~--~~~-~g~~--~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~ 212 (365)
T 1jof_A 150 MVFDPTETYL------------YSADLTANKLWTHR--KLA-SGEV--ELVGSVDAPDPGDHPRWVAMHPTGNYLYALME 212 (365)
T ss_dssp EEECTTSSEE------------EEEETTTTEEEEEE--ECT-TSCE--EEEEEEECSSTTCCEEEEEECTTSSEEEEEET
T ss_pred EEECCCCCEE------------EEEcCCCCEEEEEE--ECC-CCCE--EEeeeEecCCCCCCCCEeEECCCCCEEEEEEC
Confidence 8999999977 4433 457899999 431 1111 1111111 1245678999999999998876
Q ss_pred CCCcEEEEeCCC--CCccc--ceecccCccccccCC------ceEEEE-EecCCCcEEEEEecC-C-----eEEEEecC-
Q 010206 253 DDLRINLWNLEI--SNQSF--NIVDVKPANMEDLTE------VITSAE-FHPTHCNMLAYSSSK-G-----SIRLIDMR- 314 (515)
Q Consensus 253 ~d~~i~iwd~~~--~~~~~--~~~~~~~~~~~~~~~------~i~~i~-~~p~~~~~l~~~~~d-g-----~i~~wd~~- 314 (515)
.++.|.+|+++. ++... ..+..-+..+.+|.. .+..++ |+|+| ++|+++..+ . .|.+|++.
T Consensus 213 ~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG-~~l~v~~~~~~~~~~~~i~v~~~~~ 291 (365)
T 1jof_A 213 AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRD 291 (365)
T ss_dssp TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECT
T ss_pred CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCC-CEEEEECCCCCCCCCCeEEEEEECC
Confidence 478999998753 32211 111111111222333 588999 99999 777666543 3 89999996
Q ss_pred cccccccccceeeeccCCCccccccccccceeEEEEcc---CCCEEEEEc-C-CeEEEEEeeC
Q 010206 315 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR---NGRHILSRD-Y-MTLKLWDINM 372 (515)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~s~~-~-~~i~iwd~~~ 372 (515)
++++. ..... ...+...+..++|+| +|++|++++ + +.|.+|++..
T Consensus 292 ~g~~~----~~~~~---------~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 292 CGSIE----KQLFL---------SPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp TSCEE----EEEEE---------EECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred CCCEE----Eeeee---------eecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 44321 00000 011123456789999 899999875 4 8999999985
No 171
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.70 E-value=7.2e-15 Score=136.54 Aligned_cols=309 Identities=8% Similarity=-0.020 Sum_probs=180.7
Q ss_pred CCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeee
Q 010206 134 NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVV 213 (515)
Q Consensus 134 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~ 213 (515)
.|+.|.+||..+++......... .+ .++++|||+.+........ ....+..++.|.+||
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~----------------~p-~i~~spdg~~lyv~~~~~~--~~~~g~~~~~v~v~d-- 87 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAF----------------NG-HVQVSNDGKKIYTMTTYHE--RITRGKRSDVVEVWD-- 87 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCE----------------EE-EEEECTTSSEEEEEEEEET--TSSSSCEEEEEEEEE--
T ss_pred ccCeEEEEECCCCeEEEEecCCC----------------CC-ceEECCCCCEEEEEEeccc--ccccCCCCCEEEEEE--
Confidence 47899999999888665443221 12 6799999998822110000 000123467899999
Q ss_pred ecccccccccceeeeee-c-c---CcCCeEEEEecCCCCEEEEe--C-CCcEEEEeCCCCCcccceecccCccccccCCc
Q 010206 214 VTSQETNLVAGCRRIYA-H-A---HDYHINSISNNSDGETFISA--D-DLRINLWNLEISNQSFNIVDVKPANMEDLTEV 285 (515)
Q Consensus 214 ~~~~~~~~~~~~~~~~~-~-~---~~~~v~~~~~~~~~~~l~s~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 285 (515)
....+ ...... . . +......++++|++++|+++ . +++|.+||+.+.+....++ . . ..
T Consensus 88 ~~t~~------~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i-------~-~-~~ 152 (361)
T 2oiz_A 88 ADKLT------FEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVT-------A-A-AG 152 (361)
T ss_dssp TTTCC------EEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEG-------G-G-TT
T ss_pred CcCCc------EEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEe-------c-C-CC
Confidence 33222 111111 1 1 23456789999999999887 3 6899999999765432101 1 1 12
Q ss_pred eEEEEEecCCCcEEEEEecCCeEEEEecCc-ccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-C
Q 010206 286 ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-M 363 (515)
Q Consensus 286 i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~ 363 (515)
...+.+.|++...+++.+.||.+.+|++.. ++.... ... ...+.....++ .+.+++++..++..+. +
T Consensus 153 ~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~-~~~---------~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~ 221 (361)
T 2oiz_A 153 CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQ-SRS---------KQMFSVKDDPI-FIAPALDKDKAHFVSYYG 221 (361)
T ss_dssp EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEE-EEC---------CCCSCTTTSCB-CSCCEECSSEEEEEBTTS
T ss_pred cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeee-ccc---------cceEcCCCCce-EEEecccCCEEEEEeCCC
Confidence 234667887657888899999999999865 332100 000 00011111222 2334677776666554 8
Q ss_pred eEEEEEeeCCCCCe--eeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecC-----------CCcEEEEecCC
Q 010206 364 TLKLWDINMDSGPV--ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-----------SNLFRVFGCSE 430 (515)
Q Consensus 364 ~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~-----------dg~i~iw~~~~ 430 (515)
.+.++|+.. .... ..+......... ..... .....++|+||++.++.+.. ++.|.+||+.+
T Consensus 222 ~v~v~d~~~-~~~~~~~~~~~~~~~~~~-~~~~p----~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t 295 (361)
T 2oiz_A 222 NVYSADFSG-DEVKVDGPWSLLNDEDKA-KNWVP----GGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT 295 (361)
T ss_dssp EEEEEECSS-SSCEEEEEEESCCHHHHH-TTCEE----CCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT
T ss_pred eEEEEEecC-CCceecccccccCccccc-ccccc----CCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC
Confidence 999999874 2211 111110000000 00000 00113789999888776543 35899999998
Q ss_pred CCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCC
Q 010206 431 GSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN 500 (515)
Q Consensus 431 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 500 (515)
+ +.+.++..+. +..++++|++++|++++. +.|.+++..... .+..............++++|+|.
T Consensus 296 ~-~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~-l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 296 K-QRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPE-PKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp T-EEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSS-CEEEEEETTSCSSEEEEEECCCSC
T ss_pred C-cEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCc-ceeeEEeccCCCCcEEEEecCCCC
Confidence 7 5557777776 889999999999998887 999995432210 011111123456778999999986
No 172
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.70 E-value=1.4e-14 Score=133.58 Aligned_cols=276 Identities=12% Similarity=0.088 Sum_probs=177.0
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccccee
Q 010206 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (515)
Q Consensus 36 ~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (515)
..|.+++|++++..++....++.++.|.-. ....+..+. ..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~------------~~~ 47 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAE--------------------------PWLEISKKG------------LQL 47 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECE--------------------------EEEEEESSC------------CCE
T ss_pred cccceeeecCCccceeEEeecccCcccccc--------------------------eeEEEeccC------------ccc
Confidence 457788999998888887788888888321 112233333 457
Q ss_pred EEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCC
Q 010206 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (515)
Q Consensus 116 ~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 195 (515)
.+++| ++++.+++++..++.|.+||..+++.....
T Consensus 48 ~~~~~--~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~------------------------------------------- 82 (333)
T 2dg1_A 48 EGLNF--DRQGQLFLLDVFEGNIFKINPETKEIKRPF------------------------------------------- 82 (333)
T ss_dssp EEEEE--CTTSCEEEEETTTCEEEEECTTTCCEEEEE-------------------------------------------
T ss_pred cCcEE--CCCCCEEEEECCCCEEEEEeCCCCcEEEEe-------------------------------------------
Confidence 88999 566777777788899999998876533221
Q ss_pred CCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CC----CcEEEEeCCCCCcccc
Q 010206 196 DSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD----LRINLWNLEISNQSFN 270 (515)
Q Consensus 196 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d----~~i~iwd~~~~~~~~~ 270 (515)
..+...+.+++++++++++++. .+ +.|.+||.++.....
T Consensus 83 -----------------------------------~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~- 126 (333)
T 2dg1_A 83 -----------------------------------VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQD- 126 (333)
T ss_dssp -----------------------------------ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEE-
T ss_pred -----------------------------------eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEE-
Confidence 1123568899999999988887 55 689999987654321
Q ss_pred eecccCccccccCCceEEEEEecCCCcEEEEEec------CCeEEEEecCcccccccccceeeeccCCCccccccccccc
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS------KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 344 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~------dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (515)
+. ....+...+.+++++|++ +++++... .+.|..+|..+++.. .+. .....
T Consensus 127 ~~-----~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~------------~~~~~ 183 (333)
T 2dg1_A 127 II-----EDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVT-----PII------------QNISV 183 (333)
T ss_dssp EE-----CSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEE-----EEE------------EEESS
T ss_pred EE-----ccCccCCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEEE-----Eee------------cCCCc
Confidence 11 001234578999999998 77776543 245666665543321 111 11134
Q ss_pred eeEEEEccCCCEEEEE-cC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCc
Q 010206 345 ISDIKFARNGRHILSR-DY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 422 (515)
Q Consensus 345 i~~~~~s~~~~~l~s~-~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~ 422 (515)
+..++|+|+|+.|+.+ +. +.|.+||+...+..+..+...... ... . ......++++++|+++++...++.
T Consensus 184 ~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~-----~~~--~-~~~~~~i~~d~~G~l~v~~~~~~~ 255 (333)
T 2dg1_A 184 ANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPY-----YFT--G-HEGPDSCCIDSDDNLYVAMYGQGR 255 (333)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE-----ECC--S-SSEEEEEEEBTTCCEEEEEETTTE
T ss_pred ccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEE-----ecC--C-CCCCCceEECCCCCEEEEEcCCCE
Confidence 7889999999866654 43 899999997434443332110000 000 0 011347999999998888778899
Q ss_pred EEEEecCCCCcceeeeccCC------CceeeEEECCCCCeeEeecCC
Q 010206 423 FRVFGCSEGSAESTTLEASK------NPMRRQVQTPSRPSRPLGSLS 463 (515)
Q Consensus 423 i~iw~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~s~~~d 463 (515)
|.+||.+ + .....+..+. ..+..++++|+++.|+.++.+
T Consensus 256 v~~~d~~-g-~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 256 VLVFNKR-G-YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEEECTT-S-CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EEEECCC-C-CEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 9999984 3 3334444333 267899999998777655554
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.69 E-value=9.9e-15 Score=147.98 Aligned_cols=182 Identities=10% Similarity=0.068 Sum_probs=122.6
Q ss_pred cCCCCE-EEEe--CCCcEEEEeCC--C-CCcccceecccCccccc-----cCCceEEEEEecCCCcEEEEEecC------
Q 010206 243 NSDGET-FISA--DDLRINLWNLE--I-SNQSFNIVDVKPANMED-----LTEVITSAEFHPTHCNMLAYSSSK------ 305 (515)
Q Consensus 243 ~~~~~~-l~s~--~d~~i~iwd~~--~-~~~~~~~~~~~~~~~~~-----~~~~i~~i~~~p~~~~~l~~~~~d------ 305 (515)
|||++. |+.+ .+..|.++++. . +. .. .+.. |...+.+++|+||| +.|++++.+
T Consensus 87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~--------~l~~~~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~ 156 (662)
T 3azo_A 87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR--------PLTPVSAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGP 156 (662)
T ss_dssp CSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE--------ECSCCCCSTTCEEEEEEEEETTT-TEEEEEEEEECSSST
T ss_pred ecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE--------eccCCccCCCCccccCcEECCCC-CEEEEEEecccCCCC
Confidence 499998 7776 35667777765 2 22 21 2222 56678899999999 888888776
Q ss_pred ----CeEEEEecCc------ccccccccceeeeccCCCcccccc-ccccceeEEEEccCCCEEEEEc-C--------CeE
Q 010206 306 ----GSIRLIDMRQ------SALCDTHSKLFEEQEAPGTRSFFT-EIIASISDIKFARNGRHILSRD-Y--------MTL 365 (515)
Q Consensus 306 ----g~i~~wd~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~s~~-~--------~~i 365 (515)
..|.+||+.+ +... . +. .+...+..++|||||++|+..+ + ..|
T Consensus 157 ~~~~~~i~~~~~~~~~~~~~~~~~-----~------------l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i 219 (662)
T 3azo_A 157 SDVRRFLAAVPLDGSAAADRSAVR-----E------------LSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTEL 219 (662)
T ss_dssp TCEEEEEEEEETTSTTTTCGGGSE-----E------------SSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEE
T ss_pred CCceeEEEEEECCCCccccCCcee-----E------------EEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEE
Confidence 5899999987 4321 1 11 2235678899999999998754 2 379
Q ss_pred EEEEeeCCCC--CeeeEeee-ccccccccccccCCCccceeeEEEcCCCCEEEEecCCC--cEEEEecCCCCcceeeecc
Q 010206 366 KLWDINMDSG--PVATFQVH-EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN--LFRVFGCSEGSAESTTLEA 440 (515)
Q Consensus 366 ~iwd~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg--~i~iw~~~~~~~~~~~~~~ 440 (515)
++||+...+. ....+... ... +..++|+|||+++++++.++ .|++||+.++. .......
T Consensus 220 ~~~d~~~~g~~~~~~~l~~~~~~~---------------~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~-~~~l~~~ 283 (662)
T 3azo_A 220 KTARVTEDGRFADTRTLLGGPEEA---------------IAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA-ATQLCRR 283 (662)
T ss_dssp EEEEECTTSCEEEEEEEEEETTBC---------------EEEEEECTTSCEEEEECTTSSCEEEEECTTTCC-EEESSCC
T ss_pred EEEEECCCCcccccEEeCCCCCce---------------EcceEECCCCeEEEEECCCCCeEEEEEECCCCc-eeecccc
Confidence 9999983131 23333322 222 34899999999888888888 66666765553 3233333
Q ss_pred CCCc--------eeeEEECCCCCeeEeecCCCeEEE
Q 010206 441 SKNP--------MRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 441 ~~~~--------v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+... +..++++|+++++++++. +.++|
T Consensus 284 ~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l 318 (662)
T 3azo_A 284 EEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVL 318 (662)
T ss_dssp SSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEE
T ss_pred cccccCccccccCceEeEeCCCEEEEEEEc-CccEE
Confidence 3222 567889999999999998 88888
No 174
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.69 E-value=2.7e-13 Score=132.31 Aligned_cols=323 Identities=11% Similarity=0.030 Sum_probs=202.9
Q ss_pred CCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEEEeecC
Q 010206 45 KSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSA 124 (515)
Q Consensus 45 ~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~ 124 (515)
|.+.++++...++.|.++|..+++.. ..+... ..+..+.| ++
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~-----------------------~~i~~g-------------~~p~~v~~--Sp 206 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIK-----------------------TVLDTG-------------YAVHISRL--SA 206 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEE-----------------------EEEECS-------------SCEEEEEE--CT
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEE-----------------------EEEeCC-------------CCccceEE--CC
Confidence 44556777778899999999877642 222211 34678888 66
Q ss_pred CCcEEEeeeCCCeEEEEEcc--CCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCC
Q 010206 125 NSALYLLSTNDKTIKLWKVQ--EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPG 202 (515)
Q Consensus 125 ~~~~l~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~ 202 (515)
+++++++++.|+.|.+||+. +.+......
T Consensus 207 DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~------------------------------------------------- 237 (567)
T 1qks_A 207 SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK------------------------------------------------- 237 (567)
T ss_dssp TSCEEEEEETTSEEEEEETTSSSCCEEEEEE-------------------------------------------------
T ss_pred CCCEEEEEcCCCeEEEEECCCCCCcEeEEEe-------------------------------------------------
Confidence 78899999999999999985 443221110
Q ss_pred CcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEec----CCCCEEEEe--CCCcEEEEeCCCCCcccceecccC
Q 010206 203 GVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNN----SDGETFISA--DDLRINLWNLEISNQSFNIVDVKP 276 (515)
Q Consensus 203 ~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~ 276 (515)
. ......++|+ |||++++++ .+++|.++|..+.+.... +....
T Consensus 238 ----------------------------~--G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~-i~~~~ 286 (567)
T 1qks_A 238 ----------------------------I--GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKI-QSTRG 286 (567)
T ss_dssp ----------------------------C--CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEE-EECCE
T ss_pred ----------------------------c--CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEE-Eeccc
Confidence 0 1234688999 699998887 589999999887664432 21111
Q ss_pred ccc---cccCC-ceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEcc
Q 010206 277 ANM---EDLTE-VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 352 (515)
Q Consensus 277 ~~~---~~~~~-~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 352 (515)
... ..|.. .+..+..+++++.+++....+|.|.++|....+... ...... ......+.|+|
T Consensus 287 ~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~--v~~i~~-------------~~~~~d~~~~p 351 (567)
T 1qks_A 287 MTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK--TTEISA-------------ERFLHDGGLDG 351 (567)
T ss_dssp ECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE--EEEEEC-------------CSSEEEEEECT
T ss_pred cccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccce--eeeeec-------------cccccCceECC
Confidence 001 11223 678899999886667777778999999987643110 111111 12356789999
Q ss_pred CCCEEEEEc-C-CeEEEEEeeCCCCCeeeEee-eccccccccccccCCCccceeeEE-EcCCCCE-EEEec-CCCcEEEE
Q 010206 353 NGRHILSRD-Y-MTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFDKFECC-LSGDGGR-VATGS-YSNLFRVF 426 (515)
Q Consensus 353 ~~~~l~s~~-~-~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~~-l~s~s-~dg~i~iw 426 (515)
+|++++++. . +.|.++|+.+ ++.+..+.. ....-. . . ... ++|++.. .+++. .++.|.++
T Consensus 352 dgr~~~va~~~sn~V~ViD~~t-~kl~~~i~vgg~~Php--------g--~---g~~~~~p~~g~v~~t~~~g~~~Vsvi 417 (567)
T 1qks_A 352 SHRYFITAANARNKLVVIDTKE-GKLVAIEDTGGQTPHP--------G--R---GANFVHPTFGPVWATSHMGDDSVALI 417 (567)
T ss_dssp TSCEEEEEEGGGTEEEEEETTT-TEEEEEEECSSSSBCC--------T--T---CEEEEETTTEEEEEEEBSSSSEEEEE
T ss_pred CCCEEEEEeCCCCeEEEEECCC-CcEEEEEeccCcCCCC--------c--c---ceeeECCCCCcEEEeCCCCCCeEEEe
Confidence 999988764 3 8999999986 665555543 111100 0 0 223 5787544 44543 56899999
Q ss_pred ecCCCC------cceeeeccCCCceeeEEECCCCCeeEeecC-------CCeEEEecCCCC-----Ccc-ccCC-----c
Q 010206 427 GCSEGS------AESTTLEASKNPMRRQVQTPSRPSRPLGSL-------SGVVRRVKGADN-----SAL-DANG-----N 482 (515)
Q Consensus 427 ~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-------d~~v~l~~~~~~-----~~~-~~~~-----~ 482 (515)
|..+.+ +.+.+++.....-..+..+|+++++..... ..+|.+++.... ... +... .
T Consensus 418 d~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~ 497 (567)
T 1qks_A 418 GTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAG 497 (567)
T ss_dssp ECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHT
T ss_pred cCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccc
Confidence 998732 233555544333345778999998877653 347777443333 100 0100 0
Q ss_pred cccccCCeeEEEEcCCCCEEEEEc------CCcEEEEe
Q 010206 483 AFDFSMKLLHLAWHPSENSIACAA------SNSLYMYY 514 (515)
Q Consensus 483 ~~~~~~~i~~~~~s~~~~~la~~~------~~~~~i~~ 514 (515)
+.+....+.++.|+|+|+.+.++. ++.+.+++
T Consensus 498 ~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 498 ITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp CCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred cCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 011245789999999999988762 46677765
No 175
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.67 E-value=2.7e-13 Score=124.97 Aligned_cols=270 Identities=12% Similarity=0.052 Sum_probs=169.6
Q ss_pred CceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CC
Q 010206 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD 254 (515)
Q Consensus 176 ~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d 254 (515)
++.|++++..+ +....++.++.|. ...... +..+...+.+++|++++++++++ .+
T Consensus 10 ~~~~~~~~~~~------------~~~~~~~~~~~~~-----------~~~~~~-~~~~~~~~~~~~~~~~g~l~~~~~~~ 65 (333)
T 2dg1_A 10 TLFYSGKSNSA------------VPIISESELQTIT-----------AEPWLE-ISKKGLQLEGLNFDRQGQLFLLDVFE 65 (333)
T ss_dssp BCCSCGGGGCS------------SCCCCGGGSCEEE-----------CEEEEE-EESSCCCEEEEEECTTSCEEEEETTT
T ss_pred eeeecCCccce------------eEEeecccCcccc-----------cceeEE-EeccCccccCcEECCCCCEEEEECCC
Confidence 67788887776 6667777777664 112222 24555677899999999988887 78
Q ss_pred CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC----CeEEEEecCcccccccccceeeecc
Q 010206 255 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK----GSIRLIDMRQSALCDTHSKLFEEQE 330 (515)
Q Consensus 255 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d----g~i~~wd~~~~~~~~~~~~~~~~~~ 330 (515)
+.|.+||..+++... + ...+...+.+++++|++ +++++...+ +.|.+||..++.... .+...
T Consensus 66 ~~i~~~d~~~~~~~~-~-------~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~~~~~----~~~~~- 131 (333)
T 2dg1_A 66 GNIFKINPETKEIKR-P-------FVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNLQD----IIEDL- 131 (333)
T ss_dssp CEEEEECTTTCCEEE-E-------EECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSCEE----EECSS-
T ss_pred CEEEEEeCCCCcEEE-E-------eeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCCEEEE----EEccC-
Confidence 999999988654321 1 11345679999999998 777776666 689999987765310 11100
Q ss_pred CCCccccccccccceeEEEEccCCCEEEEEcC-----CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeE
Q 010206 331 APGTRSFFTEIIASISDIKFARNGRHILSRDY-----MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 405 (515)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 405 (515)
.+...+.+++++|+|+++++... ....||.+......+..+...... ...+
T Consensus 132 ---------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---------------~~~i 187 (333)
T 2dg1_A 132 ---------STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISV---------------ANGI 187 (333)
T ss_dssp ---------SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESS---------------EEEE
T ss_pred ---------ccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCc---------------ccce
Confidence 01246889999999998887542 234555554323333333222111 2379
Q ss_pred EEcCCCCEE-EEecCCCcEEEEecCCCCcceee--------eccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCc
Q 010206 406 CLSGDGGRV-ATGSYSNLFRVFGCSEGSAESTT--------LEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSA 476 (515)
Q Consensus 406 ~~s~~~~~l-~s~s~dg~i~iw~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~ 476 (515)
+|+|+|++| ++.+.++.|++|++.+.+..... +.++ ..+..+++++++.++++...++.|.+++.....-
T Consensus 188 ~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~~ 266 (333)
T 2dg1_A 188 ALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPI 266 (333)
T ss_dssp EECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEE
T ss_pred EECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCCCCEE
Confidence 999999865 45566889999999642222111 1122 3567899999999888877778787743211000
Q ss_pred cccCCcc--ccccCCeeEEEEcCCCCEEEEEcCC
Q 010206 477 LDANGNA--FDFSMKLLHLAWHPSENSIACAASN 508 (515)
Q Consensus 477 ~~~~~~~--~~~~~~i~~~~~s~~~~~la~~~~~ 508 (515)
..+.... .++...+.+++|+||++.|++++.+
T Consensus 267 ~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 267 GQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 0010000 0111268999999999888766654
No 176
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.66 E-value=6.9e-14 Score=128.46 Aligned_cols=260 Identities=9% Similarity=0.071 Sum_probs=165.6
Q ss_pred ccceEEEEECCCCCeEEeecCC------------------------CeEEEEEcccCcccCccccCcccccccccCCccc
Q 010206 35 VDIISAIEFDKSGDHLATGDRG------------------------GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF 90 (515)
Q Consensus 35 ~~~v~~v~~s~~g~~lasg~~d------------------------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (515)
-+.+.+|+++|+|+++++...+ +.|.+||..+++..
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~-------------------- 82 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEIL-------------------- 82 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEE--------------------
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEE--------------------
Confidence 3679999999999999888777 35777776655421
Q ss_pred eeeeecc-cCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCe-eEEEeeccCCcccCCCCCCcc
Q 010206 91 RYKTEFQ-SHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIF 168 (515)
Q Consensus 91 ~~~~~~~-~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~ 168 (515)
..+. ++- .....+++ ++++.++++...++.|++|+..... ........
T Consensus 83 ---~~~~~~~~------------~~p~gia~--d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~------------- 132 (329)
T 3fvz_A 83 ---QSSGKNLF------------YLPHGLSI--DTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRS------------- 132 (329)
T ss_dssp ---EEECTTTC------------SSEEEEEE--CTTSCEEEEETTTTEEEEECTTCSSCCSEEESBT-------------
T ss_pred ---eccCCCcc------------CCceEEEE--CCCCCEEEEECCCCEEEEEeCCCCeEEEEEeccc-------------
Confidence 1111 121 45788999 5667778777888999999976542 11110000
Q ss_pred CCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC-CCC
Q 010206 169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGE 247 (515)
Q Consensus 169 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 247 (515)
+ ..+. ..++...+..++++| ++.
T Consensus 133 --------------~---------------~~g~---------------------------~~~~~~~P~~ia~~~~~g~ 156 (329)
T 3fvz_A 133 --------------M---------------QPGS---------------------------DQNHFCQPTDVAVEPSTGA 156 (329)
T ss_dssp --------------T---------------BCCC---------------------------STTCCSSEEEEEECTTTCC
T ss_pred --------------C---------------CCCC---------------------------CccccCCCcEEEEeCCCCe
Confidence 0 0000 012335678999999 788
Q ss_pred EEEEe--CCCcEEEEeCCCCCcccceecccCc---cccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccc
Q 010206 248 TFISA--DDLRINLWNLEISNQSFNIVDVKPA---NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH 322 (515)
Q Consensus 248 ~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 322 (515)
++++. .++.|++||.. +..... +..... ...++-..+..++++|++..++++...++.|++||..+++...
T Consensus 157 lyv~d~~~~~~I~~~~~~-g~~~~~-~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~-- 232 (329)
T 3fvz_A 157 VFVSDGYCNSRIVQFSPS-GKFVTQ-WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVR-- 232 (329)
T ss_dssp EEEEECSSCCEEEEECTT-SCEEEE-ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE--
T ss_pred EEEEeCCCCCeEEEEcCC-CCEEEE-eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEE--
Confidence 88886 48999999954 332221 100000 0012234589999999832788888889999999998665432
Q ss_pred cceeeeccCCCccccccccccceeEEEEccCCCEEEE-------EcC-CeEEEEEeeCCCCCeeeEeeeccccccccccc
Q 010206 323 SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-------RDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLY 394 (515)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s-------~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (515)
.+.. ..+...+..++|+| +..+++ ... ..|++||+.+ ++.+..+.....
T Consensus 233 --~~~~----------~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~-g~~~~~~~~~~~--------- 289 (329)
T 3fvz_A 233 --EIKH----------ASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSS-GEIIDVFKPVRK--------- 289 (329)
T ss_dssp --EECC----------TTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTT-CCEEEEECCSSS---------
T ss_pred --EEec----------cccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCC-CeEEEEEcCCCC---------
Confidence 2211 12234677888998 333333 222 5899999886 776666531111
Q ss_pred cCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCC
Q 010206 395 ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 395 ~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~ 430 (515)
.......++++|+|.++++...+++|++|++..
T Consensus 290 ---~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 290 ---HFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp ---CCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred ---ccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 111234899999998888889999999999864
No 177
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.66 E-value=1.3e-13 Score=124.03 Aligned_cols=244 Identities=10% Similarity=0.121 Sum_probs=161.2
Q ss_pred cCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEe-cCCCcEEEEEec-CCeE
Q 010206 232 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-PTHCNMLAYSSS-KGSI 308 (515)
Q Consensus 232 ~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~-p~~~~~l~~~~~-dg~i 308 (515)
++-..+.+++++++++++++. .++.|.+||.. ++....+. .. ....++...+..+++. +++ +++++... ++.|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~-~~-~~~~~~~~~p~~i~~~~~~g-~l~v~~~~~~~~i 102 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFG-EC-GKRDSQLLYPNRVAVVRNSG-DIIVTERSPTHQI 102 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEEC-CB-SSSTTCBSSEEEEEEETTTT-EEEEEECGGGCEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEec-cc-CCCcccccCceEEEEEcCCC-eEEEEcCCCCCEE
Confidence 455678999999999988887 78999999987 33222110 00 0112345678999995 666 66666543 8899
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccc
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLR 387 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~ 387 (515)
.+|| .+++.. ..+.. .+...+.+++++|+|+++++... +.|.+||.. ++.+..+.....
T Consensus 103 ~~~d-~~g~~~----~~~~~-----------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~~~~-- 162 (286)
T 1q7f_A 103 QIYN-QYGQFV----RKFGA-----------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN--GNVLHKFGCSKH-- 162 (286)
T ss_dssp EEEC-TTSCEE----EEECT-----------TTCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEEECTTT--
T ss_pred EEEC-CCCcEE----EEecC-----------ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC--CCEEEEeCCCCc--
Confidence 9999 444432 11111 11245789999999998777655 899999964 555544432111
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeecc--CCCceeeEEECCCCCeeEeecCCC-
Q 010206 388 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA--SKNPMRRQVQTPSRPSRPLGSLSG- 464 (515)
Q Consensus 388 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~- 464 (515)
......++++++|+++++.+.++.|++|+.. + .....+.. +...+..+++++++.++++...++
T Consensus 163 -----------~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g-~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~ 229 (286)
T 1q7f_A 163 -----------LEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-G-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNF 229 (286)
T ss_dssp -----------CSSEEEEEECSSSEEEEEEGGGTEEEEEETT-C-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSC
T ss_pred -----------cCCcEEEEECCCCCEEEEECCCCEEEEEcCC-C-CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCE
Confidence 1113489999999988888889999999975 3 33344433 346778999999999988888876
Q ss_pred eEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcEEEEe
Q 010206 465 VVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 514 (515)
Q Consensus 465 ~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~i~~ 514 (515)
.|.+++.....-..+.. ......+.+++++|+|+++++..++.+.+|.
T Consensus 230 ~i~~~~~~g~~~~~~~~--~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~ 277 (286)
T 1q7f_A 230 NLTIFTQDGQLISALES--KVKHAQCFDVALMDDGSVVLASKDYRLYIYR 277 (286)
T ss_dssp EEEEECTTSCEEEEEEE--SSCCSCEEEEEEETTTEEEEEETTTEEEEEE
T ss_pred EEEEECCCCCEEEEEcc--cCCCCcceeEEECCCCcEEEECCCCeEEEEE
Confidence 88884321110000100 0112347899999999887776666788886
No 178
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.65 E-value=1.2e-13 Score=124.93 Aligned_cols=238 Identities=9% Similarity=0.015 Sum_probs=155.9
Q ss_pred ccCcCCeEEEEecCCCC-EEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010206 231 HAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 308 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i 308 (515)
..+.....+++|+|+++ +++++ .++.|..||..+. . . .+..+...+.+++++|++ +++++...++.|
T Consensus 24 ~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~-~-------~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i 92 (296)
T 3e5z_A 24 ADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--L-S-------PEMHPSHHQNGHCLNKQG-HLIACSHGLRRL 92 (296)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--E-E-------EEESSCSSEEEEEECTTC-CEEEEETTTTEE
T ss_pred ecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--e-E-------EEECCCCCcceeeECCCC-cEEEEecCCCeE
Confidence 34556678999999998 66666 7899999999865 2 1 223356778999999998 777777677899
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEE----Ec-----------C-CeEEEEEeeC
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS----RD-----------Y-MTLKLWDINM 372 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s----~~-----------~-~~i~iwd~~~ 372 (515)
.+||..+++... ...... ......+..++++|+|+++++ |. + +.-.||.+..
T Consensus 93 ~~~d~~~g~~~~----~~~~~~--------~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 160 (296)
T 3e5z_A 93 ERQREPGGEWES----IADSFE--------GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP 160 (296)
T ss_dssp EEECSTTCCEEE----EECEET--------TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT
T ss_pred EEEcCCCCcEEE----EeeccC--------CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECC
Confidence 999997775321 111000 001134678999999998887 32 0 1225555553
Q ss_pred CCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc---eeeeccCCCceeeEE
Q 010206 373 DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE---STTLEASKNPMRRQV 449 (515)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~---~~~~~~~~~~v~~~~ 449 (515)
. ..+..+..+... ...++|+||++.|++.+.++.|++|++...+.+ ...+..+...+..++
T Consensus 161 ~-g~~~~~~~~~~~---------------~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~ 224 (296)
T 3e5z_A 161 D-GTLSAPIRDRVK---------------PNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLR 224 (296)
T ss_dssp T-SCEEEEECCCSS---------------EEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEE
T ss_pred C-CCEEEeecCCCC---------------CccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEE
Confidence 2 333333222211 237999999999988888899999999732233 223334455677899
Q ss_pred ECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEE-cCCCCEEEEEcCCcEEEEe
Q 010206 450 QTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAW-HPSENSIACAASNSLYMYY 514 (515)
Q Consensus 450 ~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~~~~la~~~~~~~~i~~ 514 (515)
+.++|.++++. ++.|.+++-. + +.......+.. +.+++| +|+++.|.+++.++++-+.
T Consensus 225 ~d~~G~l~v~~--~~~v~~~~~~---g-~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~ 283 (296)
T 3e5z_A 225 VDAGGLIWASA--GDGVHVLTPD---G-DELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIE 283 (296)
T ss_dssp EBTTSCEEEEE--TTEEEEECTT---S-CEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEE
T ss_pred ECCCCCEEEEc--CCeEEEECCC---C-CEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEE
Confidence 99999877766 6666663211 1 11111112234 899999 5899999999988877654
No 179
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.65 E-value=1.1e-13 Score=127.17 Aligned_cols=214 Identities=10% Similarity=0.053 Sum_probs=139.7
Q ss_pred cCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecc--cCccccccCCceEEEEEec-CCCcEEEEEe-cCC
Q 010206 232 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV--KPANMEDLTEVITSAEFHP-THCNMLAYSS-SKG 306 (515)
Q Consensus 232 ~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~i~~i~~~p-~~~~~l~~~~-~dg 306 (515)
++-..+..++++++++++++. .++.|++||..........+.. .+..-..+...+..++++| ++ .++++.+ .++
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g-~lyv~d~~~~~ 166 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG-AVFVSDGYCNS 166 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC-CEEEEECSSCC
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC-eEEEEeCCCCC
Confidence 445678999999999988887 7899999998643212211100 0000123445689999999 66 7888776 699
Q ss_pred eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccC-CCEEEEEcC-CeEEEEEeeCCCCCeeeEeeec
Q 010206 307 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-GRHILSRDY-MTLKLWDINMDSGPVATFQVHE 384 (515)
Q Consensus 307 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~ 384 (515)
.|++||. ++... ..+....... ....++......++++|+ ++++++... ++|++||..+ ++.+..+....
T Consensus 167 ~I~~~~~-~g~~~----~~~~~~g~~~--~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~-G~~~~~~~~~~ 238 (329)
T 3fvz_A 167 RIVQFSP-SGKFV----TQWGEESSGS--SPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT-KEFVREIKHAS 238 (329)
T ss_dssp EEEEECT-TSCEE----EEECEECCSS--SCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT-CCEEEEECCTT
T ss_pred eEEEEcC-CCCEE----EEeccCCCCC--CCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC-CcEEEEEeccc
Confidence 9999994 44432 2222111000 000122245789999998 655555544 8999999975 67666664332
Q ss_pred cccccccccccCCCccceeeEEEcC------CCCEEEEecCCCcEEEEecCCCCcceeee---ccCCCceeeEEECCCCC
Q 010206 385 HLRPKLCDLYENDSIFDKFECCLSG------DGGRVATGSYSNLFRVFGCSEGSAESTTL---EASKNPMRRQVQTPSRP 455 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~s~s~dg~i~iw~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~ 455 (515)
... .+..++|+| +|+..++...+..|++|++.+++ .+..+ ..+...+..++++|+|.
T Consensus 239 ~~~-------------~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~-~~~~~~~~~~~~~~p~~ia~~~dG~ 304 (329)
T 3fvz_A 239 FGR-------------NVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGE-IIDVFKPVRKHFDMPHDIVASEDGT 304 (329)
T ss_dssp TTT-------------CEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCC-EEEEECCSSSCCSSEEEEEECTTSE
T ss_pred cCC-------------CcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCe-EEEEEcCCCCccCCeeEEEECCCCC
Confidence 110 134788888 44433344455699999998874 44555 46777789999999998
Q ss_pred eeEeecCCCeEEE
Q 010206 456 SRPLGSLSGVVRR 468 (515)
Q Consensus 456 ~l~s~~~d~~v~l 468 (515)
.+++...++.|++
T Consensus 305 lyvad~~~~~I~~ 317 (329)
T 3fvz_A 305 VYIGDAHTNTVWK 317 (329)
T ss_dssp EEEEESSSCCEEE
T ss_pred EEEEECCCCEEEE
Confidence 8888888888887
No 180
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.62 E-value=1.8e-13 Score=123.80 Aligned_cols=241 Identities=9% Similarity=0.011 Sum_probs=158.7
Q ss_pred ccccceEEEEECCCCC-eEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 33 QEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~-~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
.+.....+++|+|+|+ +++++..++.|..|+..++ . ..+..+.
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~------------------------~~~~~~~----------- 68 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L------------------------SPEMHPS----------- 68 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E------------------------EEEESSC-----------
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e------------------------EEEECCC-----------
Confidence 4556778999999998 7888888999999998755 2 1222333
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
..+.++++ ++++.++++...++.|.+||..+++.........
T Consensus 69 -~~~~~l~~--~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~----------------------------------- 110 (296)
T 3e5z_A 69 -HHQNGHCL--NKQGHLIACSHGLRRLERQREPGGEWESIADSFE----------------------------------- 110 (296)
T ss_dssp -SSEEEEEE--CTTCCEEEEETTTTEEEEECSTTCCEEEEECEET-----------------------------------
T ss_pred -CCcceeeE--CCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccC-----------------------------------
Confidence 55889999 5667777666667899999997776443321100
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEE----eC--------------
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS----AD-------------- 253 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s----~~-------------- 253 (515)
......+..++++|+|+++++ +.
T Consensus 111 ---------------------------------------~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~ 151 (296)
T 3e5z_A 111 ---------------------------------------GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELP 151 (296)
T ss_dssp ---------------------------------------TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSS
T ss_pred ---------------------------------------CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCC
Confidence 001134567788888887776 21
Q ss_pred CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecC-cccc-cccccceeeeccC
Q 010206 254 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR-QSAL-CDTHSKLFEEQEA 331 (515)
Q Consensus 254 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~-~~~~-~~~~~~~~~~~~~ 331 (515)
.+.|..++.. .... .+..+...+..++|+|++ +.+++.+.++.|.+||+. ++.. .. ...+
T Consensus 152 ~~~l~~~~~~--g~~~--------~~~~~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~--~~~~----- 213 (296)
T 3e5z_A 152 GRWVFRLAPD--GTLS--------APIRDRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQ--GVHF----- 213 (296)
T ss_dssp SCEEEEECTT--SCEE--------EEECCCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEE--EEEE-----
T ss_pred CcEEEEECCC--CCEE--------EeecCCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCC--CeEe-----
Confidence 2345555544 2221 223345567899999999 777777778999999986 3332 10 1111
Q ss_pred CCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEE-cCC
Q 010206 332 PGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL-SGD 410 (515)
Q Consensus 332 ~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~ 410 (515)
..+...+..++++++|+++++. .+.|.+||.. ++.+..+..+.. . .+++| +|+
T Consensus 214 -------~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~--g~~~~~~~~~~~-~---------------~~~~f~~~d 267 (296)
T 3e5z_A 214 -------TVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD--GDELGRVLTPQT-T---------------SNLCFGGPE 267 (296)
T ss_dssp -------CCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT--SCEEEEEECSSC-C---------------CEEEEESTT
T ss_pred -------eCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC--CCEEEEEECCCC-c---------------eeEEEECCC
Confidence 1122456789999999977777 7899999985 666666655443 1 37889 589
Q ss_pred CCEEEEecCCCcEEEEecCCC
Q 010206 411 GGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 411 ~~~l~s~s~dg~i~iw~~~~~ 431 (515)
++.|+.++.+ .+.-++.++.
T Consensus 268 ~~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 268 GRTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp SCEEEEEETT-EEEEEECSCC
T ss_pred CCEEEEEcCC-eEEEEEcccc
Confidence 9988888776 3445555543
No 181
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.62 E-value=7e-12 Score=113.43 Aligned_cols=277 Identities=7% Similarity=-0.003 Sum_probs=181.2
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccc
Q 010206 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (515)
+...+.+++++++|+++++...++.|.+|+.. ++.. . .....+. .
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~---------------------~-~~~~~~~------------~ 57 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT---------------------E-YPLPTPD------------A 57 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE---------------------E-EECSSTT------------C
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE---------------------E-ecCCccc------------C
Confidence 34678999999999988877668899999976 3321 0 0011112 4
Q ss_pred eeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccC
Q 010206 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (515)
Q Consensus 114 ~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~ 193 (515)
.+.++++ ++++..+++...++.|..|+.. ++.... .
T Consensus 58 ~~~~i~~--~~~g~l~v~~~~~~~i~~~~~~-g~~~~~-~---------------------------------------- 93 (299)
T 2z2n_A 58 KVMCLTI--SSDGEVWFTENAANKIGRITKK-GIIKEY-T---------------------------------------- 93 (299)
T ss_dssp CEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEE-E----------------------------------------
T ss_pred ceeeEEE--CCCCCEEEeCCCCCeEEEECCC-CcEEEE-e----------------------------------------
Confidence 5888888 5566666666667888888865 321111 0
Q ss_pred CCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccccee
Q 010206 194 SNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 272 (515)
Q Consensus 194 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 272 (515)
.......+.++++++++.++++. .++.|..||. +++.. ..
T Consensus 94 ------------------------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~- 134 (299)
T 2z2n_A 94 ------------------------------------LPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR-EY- 134 (299)
T ss_dssp ------------------------------------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-EE-
T ss_pred ------------------------------------CCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE-Ee-
Confidence 00122457789999999888887 6889999998 33322 11
Q ss_pred cccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEcc
Q 010206 273 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 352 (515)
Q Consensus 273 ~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 352 (515)
........+..+++.+++ +++++...++.|..||. +++.. .+.. ......+.++++++
T Consensus 135 -----~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~----------~~~~~~~~~i~~~~ 192 (299)
T 2z2n_A 135 -----ELPNKGSYPSFITLGSDN-ALWFTENQNNAIGRITE-SGDIT-----EFKI----------PTPASGPVGITKGN 192 (299)
T ss_dssp -----ECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEE-----EEEC----------SSTTCCEEEEEECT
T ss_pred -----cCCCCCCCCceEEEcCCC-CEEEEeCCCCEEEEEcC-CCcEE-----EeeC----------CCCCCcceeEEECC
Confidence 112234568999999998 77777767889999998 55431 1111 11124578899999
Q ss_pred CCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCC
Q 010206 353 NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 353 ~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
+|++.++... +.|.+||. + ++. ..+.... ....+..++++++|+++++...++.|..||.. +
T Consensus 193 ~g~l~v~~~~~~~i~~~~~-~-g~~-~~~~~~~-------------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g 255 (299)
T 2z2n_A 193 DDALWFVEIIGNKIGRITT-S-GEI-TEFKIPT-------------PNARPHAITAGAGIDLWFTEWGANKIGRLTSN-N 255 (299)
T ss_dssp TSSEEEEETTTTEEEEECT-T-CCE-EEEECSS-------------TTCCEEEEEECSTTCEEEEETTTTEEEEEETT-T
T ss_pred CCCEEEEccCCceEEEECC-C-CcE-EEEECCC-------------CCCCceeEEECCCCCEEEeccCCceEEEECCC-C
Confidence 9987777654 89999998 4 442 2222111 01124589999999977777678899999983 4
Q ss_pred CcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 432 SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 432 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
......+..+...+..+++ +++.+.++.+.++.+++
T Consensus 256 ~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~ 291 (299)
T 2z2n_A 256 IIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKL 291 (299)
T ss_dssp EEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEE
T ss_pred ceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEE
Confidence 2222223445567888999 88888777665666665
No 182
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.59 E-value=1.5e-14 Score=136.93 Aligned_cols=175 Identities=10% Similarity=0.066 Sum_probs=103.9
Q ss_pred EEecCCCcEEEEE-----ecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEcc-CCCEEEEEcC-
Q 010206 290 EFHPTHCNMLAYS-----SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY- 362 (515)
Q Consensus 290 ~~~p~~~~~l~~~-----~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~- 362 (515)
.|+|++ +.++.. ..+..|.+||+.+++... +..+...+..+.|+| +++.|+..++
T Consensus 148 ~~spdg-~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-----------------~~~~~~~~~~~~~sp~dg~~l~~~~~~ 209 (396)
T 3c5m_A 148 DWQPLT-SWEKFAEFYHTNPTCRLIKVDIETGELEV-----------------IHQDTAWLGHPIYRPFDDSTVGFCHEG 209 (396)
T ss_dssp GCCCCC-SHHHHHHHHHTCCCEEEEEEETTTCCEEE-----------------EEEESSCEEEEEEETTEEEEEEEEECS
T ss_pred ccCCCC-cceeeeeeccCCCcceEEEEECCCCcEEe-----------------eccCCcccccceECCCCCCEEEEEecC
Confidence 456776 554433 356689999998765321 112235688999999 7887766432
Q ss_pred ------CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCC-----CcEEEEecCCC
Q 010206 363 ------MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-----NLFRVFGCSEG 431 (515)
Q Consensus 363 ------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d-----g~i~iw~~~~~ 431 (515)
..|.+||+.. ++ ...+..+... ..+..++|+|||++|+.++.+ +.|++||+.++
T Consensus 210 ~~~~~~~~l~~~d~~~-~~-~~~l~~~~~~-------------~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (396)
T 3c5m_A 210 PHDLVDARMWLVNEDG-SN-VRKIKEHAEG-------------ESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL 274 (396)
T ss_dssp CSSSCSCCCEEEETTS-CC-CEESSCCCTT-------------EEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred CCCCCCceEEEEECCC-Cc-eeEeeccCCC-------------ccccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence 2577777753 32 2222221100 113478999999988776544 45999999877
Q ss_pred CcceeeeccCCCceeeEEECC-CCCeeEeec----------------CCCeEEEec--CCCCCccccCCccccccC----
Q 010206 432 SAESTTLEASKNPMRRQVQTP-SRPSRPLGS----------------LSGVVRRVK--GADNSALDANGNAFDFSM---- 488 (515)
Q Consensus 432 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~----------------~d~~v~l~~--~~~~~~~~~~~~~~~~~~---- 488 (515)
.... +.... ... +.++| +++++++++ .+..+.+++ +.+.. ....+..
T Consensus 275 ~~~~--l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~------~l~~~~~~~~~ 344 (396)
T 3c5m_A 275 ENEE--VMVMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ------KLCKHSTSWDV 344 (396)
T ss_dssp CEEE--EEECC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC------EEEECCCCCCC
T ss_pred CeEE--eeeCC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE------EccCCCCcccc
Confidence 4322 11111 122 88999 999888754 235666633 22211 1111222
Q ss_pred -------CeeEEEEcCCCCEEEEEcC
Q 010206 489 -------KLLHLAWHPSENSIACAAS 507 (515)
Q Consensus 489 -------~i~~~~~s~~~~~la~~~~ 507 (515)
.+..++|+|||+.|++++.
T Consensus 345 ~~~~~~~~~~~~~~s~dg~~l~~~s~ 370 (396)
T 3c5m_A 345 LDGDRQITHPHPSFTPNDDGVLFTSD 370 (396)
T ss_dssp BTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred ccccccCCCCCceEccCCCeEEEEec
Confidence 2567899999999987663
No 183
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.59 E-value=2.4e-11 Score=109.87 Aligned_cols=233 Identities=8% Similarity=-0.029 Sum_probs=154.8
Q ss_pred CCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEec
Q 010206 235 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 313 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~ 313 (515)
..+.++++++++.++++. .++.|..||.. ++ . ..+ .+......+.++++.|++ .++++...++.|..||.
T Consensus 57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~-~~~-----~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~ 127 (299)
T 2z2n_A 57 AKVMCLTISSDGEVWFTENAANKIGRITKK-GI-I-KEY-----TLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD 127 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-E-EEE-----ECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT
T ss_pred CceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc-E-EEE-----eCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC
Confidence 457789999999988887 58889999976 22 1 111 112234568999999998 78777777889999998
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccc
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD 392 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 392 (515)
+++.. .+.. ......+..++++++|+++++... +.|..||. . ++... +.....
T Consensus 128 -~g~~~-----~~~~----------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~-g~~~~-~~~~~~------- 181 (299)
T 2z2n_A 128 -DGKIR-----EYEL----------PNKGSYPSFITLGSDNALWFTENQNNAIGRITE-S-GDITE-FKIPTP------- 181 (299)
T ss_dssp -TCCEE-----EEEC----------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T-CCEEE-EECSST-------
T ss_pred -CCCEE-----EecC----------CCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-C-CcEEE-eeCCCC-------
Confidence 44321 1111 111245789999999988887655 89999987 3 43322 211110
Q ss_pred cccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCC
Q 010206 393 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGA 472 (515)
Q Consensus 393 ~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~ 472 (515)
...+..++++++|+++++...++.|.+|+. ++......+..+...+..+++.+++..+++...++.|..++-.
T Consensus 182 ------~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 182 ------ASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp ------TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred ------CCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence 111348999999998887777889999999 5533222234455678899999999977776666777663321
Q ss_pred -CCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcEEEEe
Q 010206 473 -DNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 514 (515)
Q Consensus 473 -~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~i~~ 514 (515)
... .. ........+.++++ +++++.++...+++..|+
T Consensus 255 g~~~--~~--~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~ 292 (299)
T 2z2n_A 255 NIIE--EY--PIQIKSAEPHGICF-DGETIWFAMECDKIGKLT 292 (299)
T ss_dssp TEEE--EE--ECSSSSCCEEEEEE-CSSCEEEEETTTEEEEEE
T ss_pred CceE--EE--eCCCCCCccceEEe-cCCCEEEEecCCcEEEEE
Confidence 111 01 01123457899999 888887776677887764
No 184
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.58 E-value=2.1e-13 Score=138.59 Aligned_cols=250 Identities=10% Similarity=0.004 Sum_probs=152.1
Q ss_pred ccccceEEEEECCCCCeEE-----eecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccc
Q 010206 33 QEVDIISAIEFDKSGDHLA-----TGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~la-----sg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (515)
+|...+..++|||||++|| .|+.+..|++||+.+++... ...+..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~---------------------~~~~~~--------- 167 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK---------------------VDVIEG--------- 167 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS---------------------SCCBSC---------
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC---------------------CcccCc---------
Confidence 4556799999999999999 55666799999998876320 000110
Q ss_pred cccccceeEEEEEeecCCCcEEEeeeCCCe-------------EEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcC
Q 010206 108 SLEIEEKINKIRWCQSANSALYLLSTNDKT-------------IKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (515)
Q Consensus 108 ~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~-------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 174 (515)
.....++| ++|++.|+.++.|.. |++|++.++.....
T Consensus 168 -----~~~~~~~w--spDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~----------------------- 217 (695)
T 2bkl_A 168 -----GKYATPKW--TPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDT----------------------- 217 (695)
T ss_dssp -----CTTCCCEE--CTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCE-----------------------
T ss_pred -----ccccceEE--ecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhce-----------------------
Confidence 11267889 567888998888765 66666655431000
Q ss_pred CCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-C
Q 010206 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D 253 (515)
Q Consensus 175 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~ 253 (515)
.++. ...+...+..+.|+|||++|+.+ .
T Consensus 218 ---------------------------------lv~~------------------~~~~~~~~~~~~~SpDG~~l~~~~~ 246 (695)
T 2bkl_A 218 ---------------------------------VVHE------------------RTGDPTTFLQSDLSRDGKYLFVYIL 246 (695)
T ss_dssp ---------------------------------EEEC------------------CCCCTTCEEEEEECTTSCCEEEEEE
T ss_pred ---------------------------------EEEe------------------cCCCCEEEEEEEECCCCCEEEEEEe
Confidence 0000 12344567889999999998876 4
Q ss_pred CC----cEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEe---cCCeEEEEecCccccccccccee
Q 010206 254 DL----RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---SKGSIRLIDMRQSALCDTHSKLF 326 (515)
Q Consensus 254 d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~---~dg~i~~wd~~~~~~~~~~~~~~ 326 (515)
++ .|.+|+..++. .. .+..+...+....+ +++ .+++.+. .++.|.+||+.++.... ...+
T Consensus 247 ~~~~~~~l~~~~~~~~~-~~--------~l~~~~~~~~~~~~-~~g-~l~~~s~~~~~~~~l~~~d~~~~~~~~--~~~l 313 (695)
T 2bkl_A 247 RGWSENDVYWKRPGEKD-FR--------LLVKGVGAKYEVHA-WKD-RFYVLTDEGAPRQRVFEVDPAKPARAS--WKEI 313 (695)
T ss_dssp ETTTEEEEEEECTTCSS-CE--------EEEECSSCCEEEEE-ETT-EEEEEECTTCTTCEEEEEBTTBCSGGG--CEEE
T ss_pred CCCCceEEEEEcCCCCc-eE--------EeecCCCceEEEEe-cCC-cEEEEECCCCCCCEEEEEeCCCCCccC--CeEE
Confidence 44 56666554332 11 23334555566666 677 5444444 25789999987754200 0111
Q ss_pred eeccCCCcccccccc-ccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceee
Q 010206 327 EEQEAPGTRSFFTEI-IASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE 404 (515)
Q Consensus 327 ~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 404 (515)
+..+ ...+..++|+ ++.++++.. ++..+||.+...++....+..+... .+..
T Consensus 314 -----------~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~--------------~v~~ 367 (695)
T 2bkl_A 314 -----------VPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVG--------------AASN 367 (695)
T ss_dssp -----------ECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSS--------------EECC
T ss_pred -----------ecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCe--------------EEEE
Confidence 1111 2457788888 666667665 4888888776434444444333110 1336
Q ss_pred EEEcCCCCEEE----EecCCCcEEEEecCCCC
Q 010206 405 CCLSGDGGRVA----TGSYSNLFRVFGCSEGS 432 (515)
Q Consensus 405 ~~~s~~~~~l~----s~s~dg~i~iw~~~~~~ 432 (515)
++++|+++.|+ +....++|++||+.+++
T Consensus 368 ~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 368 LMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp CBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred eecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 78889998776 33456899999998764
No 185
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.58 E-value=6.2e-13 Score=135.59 Aligned_cols=161 Identities=10% Similarity=0.047 Sum_probs=100.6
Q ss_pred CcCCeEEEEecCCCCEEEEe-C-----CCcEEEEeCCC------CCcccceecccCccccccCCceEEEEEecCCCcEEE
Q 010206 233 HDYHINSISNNSDGETFISA-D-----DLRINLWNLEI------SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA 300 (515)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~s~-~-----d~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~ 300 (515)
|...+..+.|+|||++|+.+ . +..|++||+.+ +..... .+..+...+.. .|+|+| ..|+
T Consensus 231 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-------~l~~~~~~~~~-~~s~dg-~~l~ 301 (710)
T 2xdw_A 231 EPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV-------KLIDNFEGEYD-YVTNEG-TVFT 301 (710)
T ss_dssp CTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE-------EEECSSSSCEE-EEEEET-TEEE
T ss_pred CCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE-------EeeCCCCcEEE-EEeccC-CEEE
Confidence 44567789999999998875 3 56899999976 321111 23334444544 488888 5555
Q ss_pred EEec-C---CeEEEEecCcccccccccceeeeccCCCccccccccc--cceeEEEEccCCCEEEEEc-CC--eEEEEEee
Q 010206 301 YSSS-K---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII--ASISDIKFARNGRHILSRD-YM--TLKLWDIN 371 (515)
Q Consensus 301 ~~~~-d---g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~s~~-~~--~i~iwd~~ 371 (515)
..+. + +.|.+||+.++... ..+. +..|. ..+..+.|++++.++++.. ++ .|.+||+.
T Consensus 302 ~~s~~~~~~~~l~~~d~~~~~~~--~~~~------------l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~ 367 (710)
T 2xdw_A 302 FKTNRHSPNYRLINIDFTDPEES--KWKV------------LVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLA 367 (710)
T ss_dssp EEECTTCTTCEEEEEETTSCCGG--GCEE------------EECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT
T ss_pred EEECCCCCCCEEEEEeCCCCCcc--ccee------------ccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECC
Confidence 4444 2 36999998775310 0011 11121 2577889987777777764 35 45666664
Q ss_pred CCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEe----cCCCcEEEEecCCCC
Q 010206 372 MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG----SYSNLFRVFGCSEGS 432 (515)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~----s~dg~i~iw~~~~~~ 432 (515)
. ++.+..+..+... +..++++|+++.|+.. ...+.|+.||+.+++
T Consensus 368 ~-g~~~~~l~~~~~~---------------v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 368 T-GALLKIFPLEVGS---------------VVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp T-CCEEEEECCCSSE---------------EEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred C-CCEEEecCCCCce---------------EEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 3 5555666544322 3478899998766522 246799999998774
No 186
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.58 E-value=7.9e-13 Score=122.57 Aligned_cols=281 Identities=10% Similarity=0.027 Sum_probs=154.1
Q ss_pred cccccceEEEEECCCCCeEEeec---------CCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGD---------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPE 102 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~---------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 102 (515)
+.....+..+++ ||+++|... .++.|.+|++.+++.. .+
T Consensus 11 l~~~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~------------------------~l------ 58 (347)
T 2gop_A 11 FAKFAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR------------------------FI------ 58 (347)
T ss_dssp CCCSCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE------------------------EE------
T ss_pred ceeeEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE------------------------Ec------
Confidence 344567788888 899887642 2567899998765421 11
Q ss_pred ccccccccccceeEEEEEeecCCCcEEEeeeCC---C--eEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCc
Q 010206 103 FDYLKSLEIEEKINKIRWCQSANSALYLLSTND---K--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK 177 (515)
Q Consensus 103 ~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d---~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 177 (515)
..+..++| +++|++|+.++.+ + .|.+|++.+++...+..... +. .+
T Consensus 59 ----------~~~~~~~~--SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~----------~~-------~~ 109 (347)
T 2gop_A 59 ----------ENATMPRI--SPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN----------IR-------SL 109 (347)
T ss_dssp ----------ESCEEEEE--CTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE----------EE-------EE
T ss_pred ----------ccCCCeEE--CCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC----------cc-------ce
Confidence 22778899 5677788887653 3 47777877776544433210 11 45
Q ss_pred eeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcE
Q 010206 178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRI 257 (515)
Q Consensus 178 ~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i 257 (515)
.|+|||+.+ +....+ ... ......+..+.|..++..+.......|
T Consensus 110 ~wspdg~~l------------~~~~~~------------~~~-----------~~~~~~~~~~~~~~~g~~~~~~~~~~l 154 (347)
T 2gop_A 110 EWNEDSRKL------------LIVGFK------------RRE-----------DEDFIFEDDVPAWFDDLGFFDGEKTTF 154 (347)
T ss_dssp EECTTSSEE------------EEEEEC------------CCC--------------------CCCC---------CEEEE
T ss_pred eECCCCCEE------------EEEEcc------------CCC-----------cCCcEEEcccceeecCcccccCccceE
Confidence 566666654 110000 000 000001112222223222222224678
Q ss_pred EEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCC-------eEEEEecCcccccccccceeeecc
Q 010206 258 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG-------SIRLIDMRQSALCDTHSKLFEEQE 330 (515)
Q Consensus 258 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg-------~i~~wd~~~~~~~~~~~~~~~~~~ 330 (515)
.+||+.+++.... +.. . .+..++|+|++ +++++..+. ...+|.+.+++. ..
T Consensus 155 ~~~d~~~~~~~~~--------l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~~-----~~----- 212 (347)
T 2gop_A 155 WIFDTESEEVIEE--------FEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGKE-----EK----- 212 (347)
T ss_dssp EEEETTTTEEEEE--------EEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTEE-----EE-----
T ss_pred EEEECCCCeEEee--------ecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCce-----EE-----
Confidence 9999986653121 122 2 67889999997 666665542 345554443321 11
Q ss_pred CCCccccccccccceeEEEEccCCCEEEEEc-C--------CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccc
Q 010206 331 APGTRSFFTEIIASISDIKFARNGRHILSRD-Y--------MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD 401 (515)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (515)
+..+ ..+..+ +|+|+.|+..+ + ..|.+|| . ++.......+...
T Consensus 213 -------l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~-~~~~~l~~~~~~~--------------- 264 (347)
T 2gop_A 213 -------MFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--G-KEVMGILDEVDRG--------------- 264 (347)
T ss_dssp -------EEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--S-SCEEESSTTCCSE---------------
T ss_pred -------eccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--C-CceEeccccCCcc---------------
Confidence 1112 234444 99999887654 2 3677777 2 4332222222211
Q ss_pred eee-EEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCe
Q 010206 402 KFE-CCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV 465 (515)
Q Consensus 402 v~~-~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 465 (515)
+.. +.|+ |+ ++++++.++.+++| +.++ .. ..+..+...+..+.++| .++++++.++.
T Consensus 265 ~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g-~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~ 322 (347)
T 2gop_A 265 VGQAKIKD-GK-VYFTLFEEGSVNLY-IWDG-EI-KPIAKGRHWIMGFDVDE--IVVYLKETATR 322 (347)
T ss_dssp EEEEEEET-TE-EEEEEEETTEEEEE-EESS-SE-EEEECSSSEEEEEEESS--SEEEEEECSSS
T ss_pred cCCccEEc-Cc-EEEEEecCCcEEEE-EcCC-ce-EEEecCCCeEEeeeeeC--cEEEEEcCCCC
Confidence 334 8899 88 88999999999999 8844 33 33444577888999999 66666665554
No 187
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.56 E-value=1.5e-12 Score=120.61 Aligned_cols=210 Identities=11% Similarity=0.065 Sum_probs=133.3
Q ss_pred CeEEEEecCCCCEEEEe-C-C--Cc--EEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC----
Q 010206 236 HINSISNNSDGETFISA-D-D--LR--INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---- 305 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~-~-d--~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d---- 305 (515)
.+..++|+|||+.|+.. . + +. |.+||+.+++.. .+..+.. +..++|+|++ +.|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~---------~l~~~~~-~~~~~wspdg-~~l~~~~~~~~~~ 128 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSK---------KILEAKN-IRSLEWNEDS-RKLLIVGFKRRED 128 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEE---------EEEEESE-EEEEEECTTS-SEEEEEEECCCC-
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceE---------EEEcCCC-ccceeECCCC-CEEEEEEccCCCc
Confidence 46778999999998876 3 2 33 777788754422 1122233 8999999999 777766532
Q ss_pred -----------------------CeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC
Q 010206 306 -----------------------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY 362 (515)
Q Consensus 306 -----------------------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~ 362 (515)
..|.+||+.+++... .+ .. . .+..+.|+|+| +++++..
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~----~l------------~~-~-~~~~~~~spdg-~~~~~~~ 189 (347)
T 2gop_A 129 EDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIE----EF------------EK-P-RFSSGIWHRDK-IVVNVPH 189 (347)
T ss_dssp --------CCCC---------CEEEEEEEETTTTEEEE----EE------------EE-E-TTCEEEEETTE-EEEEEEC
T ss_pred CCcEEEcccceeecCcccccCccceEEEEECCCCeEEe----ee------------cC-C-CcccccCCCCe-EEEEEec
Confidence 568889987765311 11 11 1 47789999999 7776642
Q ss_pred -C-------eEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCC--------CcEEEE
Q 010206 363 -M-------TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS--------NLFRVF 426 (515)
Q Consensus 363 -~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d--------g~i~iw 426 (515)
. ...||.+. .++ ...+..+ .. ...++|||++|+.++.+ ..|++|
T Consensus 190 ~~~~~~~~~~~~l~~~d-~~~-~~~l~~~-~~-----------------~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~ 249 (347)
T 2gop_A 190 REIIPQYFKFWDIYIWE-DGK-EEKMFEK-VS-----------------FYAVDSDGERILLYGKPEKKYMSEHNKLYIY 249 (347)
T ss_dssp CCSSCCSSCCEEEEEEE-TTE-EEEEEEE-ES-----------------EEEEEECSSCEEEEECCSSSCCCSSCEEEEE
T ss_pred ccccccccccccEEEeC-CCc-eEEeccC-cc-----------------eeeECCCCCEEEEEEccccCCccccceEEEE
Confidence 1 45666665 243 3333332 11 22349999988877643 468888
Q ss_pred ecCCCCcceeeeccCCCceee-EEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEE
Q 010206 427 GCSEGSAESTTLEASKNPMRR-QVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACA 505 (515)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~ 505 (515)
| ++ ........+...+.. +.|+ ++ ++++++.++.++|+ -.. + .. .....+...|.+++|+| .+++++
T Consensus 250 d--~~-~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~--g-~~-~~~~~~~~~v~~~~~s~--~~~~~~ 317 (347)
T 2gop_A 250 D--GK-EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWD--G-EI-KPIAKGRHWIMGFDVDE--IVVYLK 317 (347)
T ss_dssp C--SS-CEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EES--S-SE-EEEECSSSEEEEEEESS--SEEEEE
T ss_pred C--CC-ceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcC--C-ce-EEEecCCCeEEeeeeeC--cEEEEE
Confidence 8 33 343445566777876 8999 88 88999999988883 211 1 11 12223467799999999 555555
Q ss_pred cC
Q 010206 506 AS 507 (515)
Q Consensus 506 ~~ 507 (515)
+.
T Consensus 318 ~~ 319 (347)
T 2gop_A 318 ET 319 (347)
T ss_dssp EC
T ss_pred cC
Confidence 43
No 188
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.56 E-value=1.8e-11 Score=119.43 Aligned_cols=297 Identities=11% Similarity=0.070 Sum_probs=184.5
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEcc--cCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERT--DTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
....+..++|+|||++|++++.++.|.+||+. +.+.. ..+...
T Consensus 195 ~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v-----------------------~~i~~G------------ 239 (567)
T 1qks_A 195 TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV-----------------------AEIKIG------------ 239 (567)
T ss_dssp CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE-----------------------EEEECC------------
T ss_pred CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEe-----------------------EEEecC------------
Confidence 34456799999999999999999999999985 33321 222211
Q ss_pred cceeEEEEEee--cCCCcEEEeeeC-CCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccc
Q 010206 112 EEKINKIRWCQ--SANSALYLLSTN-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (515)
Q Consensus 112 ~~~v~~l~~~~--~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~ 188 (515)
.....++|++ .++|++++++.. +++|.++|..+.+...........
T Consensus 240 -~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~------------------------------ 288 (567)
T 1qks_A 240 -SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT------------------------------ 288 (567)
T ss_dssp -SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEEC------------------------------
T ss_pred -CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccc------------------------------
Confidence 3367888941 047778888754 599999998887765543321000
Q ss_pred ccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccC-cCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCC
Q 010206 189 NFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAH-DYHINSISNNSDGETFISA--DDLRINLWNLEIS 265 (515)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~ 265 (515)
.+. ...| ...+..+..++++..++.. .+|.|.++|....
T Consensus 289 ----------------------------~~~----------~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~ 330 (567)
T 1qks_A 289 ----------------------------YDE----------QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDL 330 (567)
T ss_dssp ----------------------------TTT----------CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCS
T ss_pred ----------------------------ccc----------ccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCC
Confidence 000 0011 1256678888887766665 6899999998765
Q ss_pred CcccceecccCccccccCCceEEEEEecCCCcEEEE-EecCCeEEEEecCcccccccccceeee-ccCCCcccccccccc
Q 010206 266 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY-SSSKGSIRLIDMRQSALCDTHSKLFEE-QEAPGTRSFFTEIIA 343 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~-~~~dg~i~~wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 343 (515)
+... +. .+ ........+.|+|++ ++|++ ...++.|.++|+.++++.. .... .. ..|.+
T Consensus 331 ~~~~-v~-----~i-~~~~~~~d~~~~pdg-r~~~va~~~sn~V~ViD~~t~kl~~----~i~vgg~--------~Phpg 390 (567)
T 1qks_A 331 NNLK-TT-----EI-SAERFLHDGGLDGSH-RYFITAANARNKLVVIDTKEGKLVA----IEDTGGQ--------TPHPG 390 (567)
T ss_dssp SEEE-EE-----EE-ECCSSEEEEEECTTS-CEEEEEEGGGTEEEEEETTTTEEEE----EEECSSS--------SBCCT
T ss_pred ccce-ee-----ee-eccccccCceECCCC-CEEEEEeCCCCeEEEEECCCCcEEE----EEeccCc--------CCCCc
Confidence 4221 11 11 123456788999999 65554 4468899999999887532 1221 11 11221
Q ss_pred ceeEEEEccC-CCEEEEEc--CCeEEEEEeeCC------CCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEE
Q 010206 344 SISDIKFARN-GRHILSRD--YMTLKLWDINMD------SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 414 (515)
Q Consensus 344 ~i~~~~~s~~-~~~l~s~~--~~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 414 (515)
.-..+ ++|+ +...+++. ++.|.++|.... .+.++++...... . ..+..+|++++|
T Consensus 391 ~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g-----------~----~~i~~~p~~~~l 454 (567)
T 1qks_A 391 RGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGG-----------S----LFIKTHPNSQYL 454 (567)
T ss_dssp TCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC-----------C----CCEECCTTCSEE
T ss_pred cceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCC-----------C----EEEEeCCCCCeE
Confidence 11112 5787 44445553 489999999852 2344555443211 0 157899999998
Q ss_pred EEecC-------CCcEEEEecCCC-----Ccceeeec--------cCCCceeeEEECCCCCeeEeecC-----CCeEEEe
Q 010206 415 ATGSY-------SNLFRVFGCSEG-----SAESTTLE--------ASKNPMRRQVQTPSRPSRPLGSL-----SGVVRRV 469 (515)
Q Consensus 415 ~s~s~-------dg~i~iw~~~~~-----~~~~~~~~--------~~~~~v~~~~~~~~~~~l~s~~~-----d~~v~l~ 469 (515)
..... .++|.++|+.+. ......+. .....+..+.|+|+|+.+..+.+ ++.|.++
T Consensus 455 ~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~ 534 (567)
T 1qks_A 455 YVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVV 534 (567)
T ss_dssp EEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEE
T ss_pred EEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEE
Confidence 87652 469999999866 22212222 12456788999999998766633 5777774
Q ss_pred c
Q 010206 470 K 470 (515)
Q Consensus 470 ~ 470 (515)
+
T Consensus 535 D 535 (567)
T 1qks_A 535 D 535 (567)
T ss_dssp E
T ss_pred E
Confidence 4
No 189
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.56 E-value=3e-12 Score=114.05 Aligned_cols=156 Identities=6% Similarity=0.003 Sum_probs=106.7
Q ss_pred CCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEec
Q 010206 235 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 313 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~ 313 (515)
..+..++++++++++++. .++.|.+|+..+..... ........+.+++++|++ +++++...++.|.+||.
T Consensus 108 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~--------~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~ 178 (270)
T 1rwi_B 108 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV--------LPFTGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEA 178 (270)
T ss_dssp SSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE--------CCCCSCCSCCCEEECTTC-CEEEEEGGGTEEEEECT
T ss_pred CCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe--------eccccCCCceeEEEeCCC-CEEEEECCCCEEEEEec
Confidence 456789999999988776 68899999765433211 111223457889999998 77777777889999998
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccc
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD 392 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 392 (515)
........ . ..+...+.+++++++|.++++... +.|.+||... ... .......
T Consensus 179 ~~~~~~~~-----~-----------~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~-~~~-~~~~~~~-------- 232 (270)
T 1rwi_B 179 ESNNQVVL-----P-----------FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS-TTS-TVLPFTG-------- 232 (270)
T ss_dssp TTCCEEEC-----C-----------CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTC-SCC-EECCCCS--------
T ss_pred CCCceEee-----c-----------ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCC-Ccc-eeeccCC--------
Confidence 76542110 0 011145788999999977776654 8999999863 222 2211100
Q ss_pred cccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCC
Q 010206 393 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 393 ~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
...+..++++++|+++++...++.|+++++...
T Consensus 233 ------~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 233 ------LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp ------CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred ------CCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 111458999999998889899999999998754
No 190
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.53 E-value=1e-12 Score=133.94 Aligned_cols=240 Identities=8% Similarity=-0.050 Sum_probs=155.6
Q ss_pred cCcCCeEEEEecCCCCEEEEe-C-CC----cEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC
Q 010206 232 AHDYHINSISNNSDGETFISA-D-DL----RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK 305 (515)
Q Consensus 232 ~~~~~v~~~~~~~~~~~l~s~-~-d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d 305 (515)
+|...+..++|||||++|+.+ + +| .|++||+.+++.... .+. ...+.+++|+||+ +.|+.++.+
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-------~~~--~~~~~~~~wspDg-~~l~~~~~~ 191 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-------VLE--RVKFSCMAWTHDG-KGMFYNAYP 191 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-------EEE--EECSCCEEECTTS-SEEEEEECC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-------ccc--CcccceEEEEeCC-CEEEEEEEC
Confidence 344567899999999999976 3 33 899999987764321 111 1225679999999 788888777
Q ss_pred Ce----------------EEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc------CC
Q 010206 306 GS----------------IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD------YM 363 (515)
Q Consensus 306 g~----------------i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~------~~ 363 (515)
+. |++|++.++..... ..+.. ..|...+..+.|||||++|+... ..
T Consensus 192 ~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~--~v~~~----------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 259 (710)
T 2xdw_A 192 QQDGKSDGTETSTNLHQKLYYHVLGTDQSEDI--LCAEF----------PDEPKWMGGAELSDDGRYVLLSIREGCDPVN 259 (710)
T ss_dssp CCSSCCSSSCCCCCCCCEEEEEETTSCGGGCE--EEECC----------TTCTTCEEEEEECTTSCEEEEEEECSSSSCC
T ss_pred CccccccccccccCCCCEEEEEECCCCcccce--EEecc----------CCCCeEEEEEEEcCCCCEEEEEEEccCCCcc
Confidence 65 99999987652111 11111 11234577899999999988743 35
Q ss_pred eEEEEEeeC------CCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCC----CcEEEEecCCCCc
Q 010206 364 TLKLWDINM------DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS----NLFRVFGCSEGSA 433 (515)
Q Consensus 364 ~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d----g~i~iw~~~~~~~ 433 (515)
.|++||+.. +......+..+... + ...|+|+|+.|+..+.+ +.|.+||+.++..
T Consensus 260 ~l~~~d~~~~~~~~~~~~~~~~l~~~~~~---------------~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~ 323 (710)
T 2xdw_A 260 RLWYCDLQQESNGITGILKWVKLIDNFEG---------------E-YDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE 323 (710)
T ss_dssp EEEEEEGGGSSSSSCSSCCCEEEECSSSS---------------C-EEEEEEETTEEEEEECTTCTTCEEEEEETTSCCG
T ss_pred EEEEEECcccccccCCccceEEeeCCCCc---------------E-EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCc
Confidence 899999874 22234555444322 1 23588999987765543 3699999987642
Q ss_pred -ceeeeccCCC--ceeeEEECCCCCeeEeecCCCeEEE--ec--CCCCCccccCCccccccCCeeEEEEcCCCCEEEEEc
Q 010206 434 -ESTTLEASKN--PMRRQVQTPSRPSRPLGSLSGVVRR--VK--GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 506 (515)
Q Consensus 434 -~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~d~~v~l--~~--~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~ 506 (515)
....+..|.. .+..+.+++++.++++...|+..+| ++ ..+.. .....+...+..++++|+++.|++..
T Consensus 324 ~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~-----~~l~~~~~~v~~~~~s~d~~~l~~~~ 398 (710)
T 2xdw_A 324 SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALL-----KIFPLEVGSVVGYSGQKKDTEIFYQF 398 (710)
T ss_dssp GGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEE-----EEECCCSSEEEEEECCTTCSEEEEEE
T ss_pred ccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEE-----EecCCCCceEEEEecCCCCCEEEEEE
Confidence 1234444433 6778888888888999999987766 22 11111 01112356788999999998877442
Q ss_pred C-----CcEEEEe
Q 010206 507 S-----NSLYMYY 514 (515)
Q Consensus 507 ~-----~~~~i~~ 514 (515)
. ..+++|+
T Consensus 399 ss~~~P~~i~~~d 411 (710)
T 2xdw_A 399 TSFLSPGIIYHCD 411 (710)
T ss_dssp ECSSCCCEEEEEE
T ss_pred eCCCCCCEEEEEE
Confidence 2 3466664
No 191
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.53 E-value=2e-12 Score=131.36 Aligned_cols=238 Identities=9% Similarity=-0.018 Sum_probs=148.5
Q ss_pred cCcCCeEEEEecCCCCEEEEe------CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC
Q 010206 232 AHDYHINSISNNSDGETFISA------DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK 305 (515)
Q Consensus 232 ~~~~~v~~~~~~~~~~~l~s~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d 305 (515)
+|...+.+++|||||++|+.+ ++..|++||+.+++.... ..+... ....++|+||| +.|+.++.|
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~------~~~~~~--~~~~~~wspDg-~~l~~~~~d 188 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV------DVIEGG--KYATPKWTPDS-KGFYYEWLP 188 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS------CCBSCC--TTCCCEECTTS-SEEEEEECC
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC------cccCcc--cccceEEecCC-CEEEEEEec
Confidence 455678899999999999953 246899999997764300 011111 12578999999 888888887
Q ss_pred Ce-------------EEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-C----eEEE
Q 010206 306 GS-------------IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-M----TLKL 367 (515)
Q Consensus 306 g~-------------i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~----~i~i 367 (515)
.. |++|++.++..... ..+.. ..|...+..+.|||||++|+..+. + .|.+
T Consensus 189 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~--lv~~~----------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~ 256 (695)
T 2bkl_A 189 TDPSIKVDERPGYTTIRYHTLGTEPSKDT--VVHER----------TGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYW 256 (695)
T ss_dssp CCTTSCGGGGGGGCEEEEEETTSCGGGCE--EEECC----------CCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEE
T ss_pred CCCCCccccCCCCCEEEEEECCCCchhce--EEEec----------CCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEE
Confidence 65 99999987653111 11111 123346889999999999887542 3 5555
Q ss_pred EEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEec---CCCcEEEEecCCCCc--ceeeeccC-
Q 010206 368 WDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS---YSNLFRVFGCSEGSA--ESTTLEAS- 441 (515)
Q Consensus 368 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s---~dg~i~iw~~~~~~~--~~~~~~~~- 441 (515)
||.. ......+..+... +....+ ++|++++... .++.|.+||+.++.. ....+..+
T Consensus 257 ~~~~--~~~~~~l~~~~~~---------------~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 318 (695)
T 2bkl_A 257 KRPG--EKDFRLLVKGVGA---------------KYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDS 318 (695)
T ss_dssp ECTT--CSSCEEEEECSSC---------------CEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCS
T ss_pred EcCC--CCceEEeecCCCc---------------eEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCC
Confidence 5443 3344455444322 124455 5666444444 358999999987642 12223333
Q ss_pred CCceeeEEECCCCCeeEeecCCCeEEE--ec--CCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcC-----CcEEE
Q 010206 442 KNPMRRQVQTPSRPSRPLGSLSGVVRR--VK--GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS-----NSLYM 512 (515)
Q Consensus 442 ~~~v~~~~~~~~~~~l~s~~~d~~v~l--~~--~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~-----~~~~i 512 (515)
...+..+.++ ++.++++...|+..+| ++ +.... .+. ......|..++++|+++.|+.... ..+++
T Consensus 319 ~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~--~l~---~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~ 392 (695)
T 2bkl_A 319 SASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVR--TVQ---LPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYK 392 (695)
T ss_dssp SCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEE--ECC---CSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEE
T ss_pred CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeE--Eec---CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEE
Confidence 4567778887 6778899999998888 22 22111 111 112456788899999988874432 34666
Q ss_pred Ee
Q 010206 513 YY 514 (515)
Q Consensus 513 ~~ 514 (515)
|+
T Consensus 393 ~d 394 (695)
T 2bkl_A 393 TS 394 (695)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 192
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.51 E-value=1.9e-10 Score=103.93 Aligned_cols=270 Identities=9% Similarity=0.011 Sum_probs=175.6
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccce
Q 010206 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (515)
Q Consensus 35 ~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (515)
...+.+++++++|++.++...++.|.+|+.. ++.. . ..+..+. ..
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~---------------------~-~~~~~~~------------~~ 63 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK---------------------E-FEVPTPD------------AK 63 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE---------------------E-EECSSTT------------CC
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE---------------------E-EECCCCC------------Cc
Confidence 4578999999999988877778899999976 3321 0 0111111 45
Q ss_pred eEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCC
Q 010206 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (515)
Q Consensus 115 v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~ 194 (515)
+.++++ .+++..+++...++.|..||.. ++.... .
T Consensus 64 ~~~i~~--~~~g~l~v~~~~~~~v~~~d~~-g~~~~~-~----------------------------------------- 98 (300)
T 2qc5_A 64 VMCLIV--SSLGDIWFTENGANKIGKLSKK-GGFTEY-P----------------------------------------- 98 (300)
T ss_dssp EEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEE-E-----------------------------------------
T ss_pred ceeEEE--CCCCCEEEEecCCCeEEEECCC-CCeEEe-c-----------------------------------------
Confidence 788888 5666666666667888888876 443211 0
Q ss_pred CCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceec
Q 010206 195 NDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 273 (515)
Q Consensus 195 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~ 273 (515)
.......+.+++++++++++++. .++.|..+|.. ++.. ..
T Consensus 99 -----------------------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~-- 139 (300)
T 2qc5_A 99 -----------------------------------LPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EY-- 139 (300)
T ss_dssp -----------------------------------CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EE--
T ss_pred -----------------------------------CCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-Ec--
Confidence 01112456788999999988887 58899999986 3322 11
Q ss_pred ccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccC
Q 010206 274 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 353 (515)
Q Consensus 274 ~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 353 (515)
.+......+.++++.+++ +++++...++.|..||. +++.. .+.. ..+...+..++++++
T Consensus 140 ----~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~----------~~~~~~~~~i~~d~~ 198 (300)
T 2qc5_A 140 ----DLPNKGSYPAFITLGSDN-ALWFTENQNNSIGRITN-TGKLE-----EYPL----------PTNAAAPVGITSGND 198 (300)
T ss_dssp ----ECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEE-----EEEC----------SSTTCCEEEEEECTT
T ss_pred ----cCCCCCCCceeEEECCCC-CEEEEecCCCeEEEECC-CCcEE-----EeeC----------CCCCCCcceEEECCC
Confidence 112234568999999998 77666666789999998 44321 1111 111245789999999
Q ss_pred CCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCC
Q 010206 354 GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 432 (515)
Q Consensus 354 ~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~ 432 (515)
|++.++... +.|.+||.. ++... +..... ...+..++++++|++.++...++.|..|+.. +.
T Consensus 199 g~l~v~~~~~~~i~~~~~~--g~~~~-~~~~~~-------------~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~ 261 (300)
T 2qc5_A 199 GALWFVEIMGNKIGRITTT--GEISE-YDIPTP-------------NARPHAITAGKNSEIWFTEWGANQIGRITND-NT 261 (300)
T ss_dssp SSEEEEETTTTEEEEECTT--CCEEE-EECSST-------------TCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC
T ss_pred CCEEEEccCCCEEEEEcCC--CcEEE-EECCCC-------------CCCceEEEECCCCCEEEeccCCCeEEEECCC-Cc
Confidence 987777655 789999873 33222 211110 1114589999999977777778899999984 42
Q ss_pred cceeeeccCCCceeeEEECCCCCeeEeec
Q 010206 433 AESTTLEASKNPMRRQVQTPSRPSRPLGS 461 (515)
Q Consensus 433 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 461 (515)
.....+......+..+++.+++.+.++..
T Consensus 262 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~ 290 (300)
T 2qc5_A 262 IQEYQLQTENAEPHGITFGKDGSVWFALK 290 (300)
T ss_dssp EEEEECCSTTCCCCCEEECTTSCEEEECS
T ss_pred EEEEECCccCCccceeEeCCCCCEEEEcc
Confidence 22223343456678999999988766655
No 193
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.51 E-value=1.5e-11 Score=109.22 Aligned_cols=184 Identities=11% Similarity=0.093 Sum_probs=127.0
Q ss_pred CeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCcccccc-CCceEEEEEecCCCcEEEEEec-CCeEEEEec
Q 010206 236 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDL-TEVITSAEFHPTHCNMLAYSSS-KGSIRLIDM 313 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~p~~~~~l~~~~~-dg~i~~wd~ 313 (515)
.+.++.++|+|++|+ +.++.|..||. +++...+ +..+ ...+.++.+.|+| +++++.+. ++.+..+|.
T Consensus 38 ~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~--------~~~~~~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~ 106 (276)
T 3no2_A 38 ECNSVAATKAGEILF-SYSKGAKMITR-DGRELWN--------IAAPAGCEMQTARILPDG-NALVAWCGHPSTILEVNM 106 (276)
T ss_dssp CCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEE--------EECCTTCEEEEEEECTTS-CEEEEEESTTEEEEEECT
T ss_pred CCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEE--------EcCCCCccccccEECCCC-CEEEEecCCCCEEEEEeC
Confidence 456788899999888 55667999998 5654432 2222 3468899999999 88888777 778888875
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccc
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD 392 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 392 (515)
+++.+.+ +..... ...+......+.+.++|+++++... +.|..||.. ++.+.++.....
T Consensus 107 -~Gk~l~~----~~~~~~------~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~--G~~~w~~~~~~~------- 166 (276)
T 3no2_A 107 -KGEVLSK----TEFETG------IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN--GQLLNSVKLSGT------- 166 (276)
T ss_dssp -TSCEEEE----EEECCS------CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT--SCEEEEEECSSC-------
T ss_pred -CCCEEEE----EeccCC------CCcccccccCceECCCCCEEEEecCCCEEEEECCC--CCEEEEEECCCC-------
Confidence 5554322 221110 0111134556678899999999865 999999986 777777765421
Q ss_pred cccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccC------CCceeeEEECCCCCeeEee
Q 010206 393 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS------KNPMRRQVQTPSRPSRPLG 460 (515)
Q Consensus 393 ~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~s~ 460 (515)
..++.+.++|+++++++.+++|..+|..+++ .+..+..+ ...+..++..++|.++++.
T Consensus 167 ---------~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~-~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 167 ---------PFSSAFLDNGDCLVACGDAHCFVQLNLESNR-IVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp ---------CCEEEECTTSCEEEECBTTSEEEEECTTTCC-EEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred ---------ccceeEcCCCCEEEEeCCCCeEEEEeCcCCc-EEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 1267888999999999988999999999874 44444322 2236677788888877765
No 194
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.50 E-value=2.2e-11 Score=108.31 Aligned_cols=233 Identities=6% Similarity=-0.047 Sum_probs=148.7
Q ss_pred CeEEEEecCCCCEEE-Ee-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEec
Q 010206 236 HINSISNNSDGETFI-SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 313 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~ 313 (515)
...++++++++++++ +. .++.|.+||..+..... ....+...+.++++++++ +++++.. ++.|.+||.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~--------~~~~~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~ 94 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV--------LPFNGLYQPQGLAVDGAG-TVYVTDF-NNRVVTLAA 94 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE--------CCCCSCCSCCCEEECTTC-CEEEEET-TTEEEEECT
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce--------EeeCCcCCcceeEECCCC-CEEEEcC-CCEEEEEeC
Confidence 678999999999877 54 68999999976443211 001223457889999998 6666555 889999998
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccc
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD 392 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 392 (515)
...... .+.. .....+..++++++|+++++... +.|.+|+... .... ......
T Consensus 95 ~~~~~~-----~~~~-----------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~-~~~~--~~~~~~------- 148 (270)
T 1rwi_B 95 GSNNQT-----VLPF-----------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS-KTQT--VLPFTG------- 148 (270)
T ss_dssp TCSCCE-----ECCC-----------CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTC-CSCE--ECCCCS-------
T ss_pred CCceEe-----eeec-----------CCcCCCcceEECCCCCEEEEECCCCEEEEEECCC-ceeE--eecccc-------
Confidence 654321 1110 11135789999999997777554 8999996543 2211 111110
Q ss_pred cccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCC
Q 010206 393 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGA 472 (515)
Q Consensus 393 ~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~ 472 (515)
......++++++|+++++...++.|.+|+..... .......+...+..+++.+++..+++...++.|.+++..
T Consensus 149 ------~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~ 221 (270)
T 1rwi_B 149 ------LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN-QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG 221 (270)
T ss_dssp ------CCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC-EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTT
T ss_pred ------CCCceeEEEeCCCCEEEEECCCCEEEEEecCCCc-eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCC
Confidence 0112379999999988887788999999987653 222222333667899999999888887778888773322
Q ss_pred CCCccccCCccccccCCeeEEEEcCCCCEEEEEc-CCcEEEEe
Q 010206 473 DNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 514 (515)
Q Consensus 473 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~-~~~~~i~~ 514 (515)
... ...........+..++++|+|+++++.. ++.+.+|.
T Consensus 222 ~~~---~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~ 261 (270)
T 1rwi_B 222 STT---STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT 261 (270)
T ss_dssp CSC---CEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred CCc---ceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEc
Confidence 111 0001111235689999999998766655 45566664
No 195
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.49 E-value=2.4e-11 Score=110.83 Aligned_cols=159 Identities=8% Similarity=0.112 Sum_probs=101.5
Q ss_pred CCeEEEEecCCCCEEEEe-CC---------------CcEEEEeCCCCCcccceecccCccccccCCceEEEEEe----cC
Q 010206 235 YHINSISNNSDGETFISA-DD---------------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH----PT 294 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d---------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~----p~ 294 (515)
..+.+++++++++++++. .+ +.|..||.. ++ .. .+..+......++++ |+
T Consensus 117 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~--------~~~~~~~~~~~i~~~~~~d~d 186 (314)
T 1pjx_A 117 QGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ-MI--------QVDTAFQFPNGIAVRHMNDGR 186 (314)
T ss_dssp BCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC-EE--------EEEEEESSEEEEEEEECTTSC
T ss_pred cCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC-EE--------EeccCCCCcceEEEecccCCC
Confidence 346788888988887776 44 567667654 22 21 111233456889999 99
Q ss_pred CCcEEE-EEecCCeEEEEecC-cccccccccceeeeccCCCccccccccc-cceeEEEEccCCCEEEEEc-CCeEEEEEe
Q 010206 295 HCNMLA-YSSSKGSIRLIDMR-QSALCDTHSKLFEEQEAPGTRSFFTEII-ASISDIKFARNGRHILSRD-YMTLKLWDI 370 (515)
Q Consensus 295 ~~~~l~-~~~~dg~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~s~~-~~~i~iwd~ 370 (515)
+ +.++ +...++.|.+||+. ++.... ...+.. +.++. ..+..++++++|+++++.. .+.|.+||.
T Consensus 187 g-~~l~v~~~~~~~i~~~~~~~~g~~~~--~~~~~~---------~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~ 254 (314)
T 1pjx_A 187 P-YQLIVAETPTKKLWSYDIKGPAKIEN--KKVWGH---------IPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP 254 (314)
T ss_dssp E-EEEEEEETTTTEEEEEEEEETTEEEE--EEEEEE---------CCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred C-CEEEEEECCCCeEEEEECCCCCcccc--ceEEEE---------CCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcC
Confidence 8 5554 44568899999986 332110 011110 11122 3467899999999888764 489999998
Q ss_pred eCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEE-EEecCCCcEEEEecCCC
Q 010206 371 NMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV-ATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~s~dg~i~iw~~~~~ 431 (515)
.+ ++.+..+..+... +.+++|+++++.| ++...++.|..|++...
T Consensus 255 ~~-g~~~~~~~~~~~~---------------~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 255 DG-GQPKMRIRCPFEK---------------PSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp TC-BSCSEEEECSSSC---------------EEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred CC-CcEeEEEeCCCCC---------------ceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 74 5555555433221 4589999999954 55566789999998754
No 196
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.46 E-value=6.6e-11 Score=108.35 Aligned_cols=232 Identities=9% Similarity=-0.014 Sum_probs=145.8
Q ss_pred CeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecC
Q 010206 236 HINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 314 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~ 314 (515)
....+.+. +++.+++. .++.|.+||..+.+....+ . ....+..+++++++ +++++...++.|.+||..
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i--------~-~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~ 113 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRI--------T-GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPK 113 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEE--------E-CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETT
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEc--------C-CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECC
Confidence 34566664 34455555 6899999999987654322 1 24567899999998 666665589999999998
Q ss_pred cccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc--CCeEEEEEeeCCCCCeeeEeeeccccccccc
Q 010206 315 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEHLRPKLCD 392 (515)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 392 (515)
+++... .+..... .+.......+++ .+++++++.. ++.|.++|+.+ ++.+.++......
T Consensus 114 t~~~~~----~i~~g~~-------~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t-~~~~~~i~~g~~p------ 174 (328)
T 3dsm_A 114 TYEITG----YIECPDM-------DMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTET-DKVVDELTIGIQP------ 174 (328)
T ss_dssp TTEEEE----EEECTTC-------CTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTT-TEEEEEEECSSCB------
T ss_pred CCeEEE----EEEcCCc-------cccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCC-CeEEEEEEcCCCc------
Confidence 876532 1221110 000113455666 4454444442 48999999986 6666555432211
Q ss_pred cccCCCccceeeEEEcCCCCEEEEecCC----------CcEEEEecCCCCcceeeeccC-CCceeeEEECCCCCeeEeec
Q 010206 393 LYENDSIFDKFECCLSGDGGRVATGSYS----------NLFRVFGCSEGSAESTTLEAS-KNPMRRQVQTPSRPSRPLGS 461 (515)
Q Consensus 393 ~~~~~~~~~v~~~~~s~~~~~l~s~s~d----------g~i~iw~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~ 461 (515)
..++++|+|++++++..+ +.|.++|..++ .+...+... ......++++|+++.|..+.
T Consensus 175 ----------~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~-~v~~~~~~~~g~~p~~la~~~d~~~lyv~~ 243 (328)
T 3dsm_A 175 ----------TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF-TVEKQFKFKLGDWPSEVQLNGTRDTLYWIN 243 (328)
T ss_dssp ----------CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT-EEEEEEECCTTCCCEEEEECTTSCEEEEES
T ss_pred ----------cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC-eEEEEEecCCCCCceeEEEecCCCEEEEEc
Confidence 278999999988877655 78999999876 343444332 23678999999999887776
Q ss_pred CCCeEEEecC--CCCCccccCCccccc-cCCeeEEEEcCCCCEEEEEc------CCcEEEEe
Q 010206 462 LSGVVRRVKG--ADNSALDANGNAFDF-SMKLLHLAWHPSENSIACAA------SNSLYMYY 514 (515)
Q Consensus 462 ~d~~v~l~~~--~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~la~~~------~~~~~i~~ 514 (515)
. .|.+++. .+... ...... ......++++|++..|.++. .+.+.+|+
T Consensus 244 ~--~v~~~d~~t~~~~~----~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 244 N--DIWRMPVEADRVPV----RPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp S--SEEEEETTCSSCCS----SCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred c--EEEEEECCCCceee----eeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence 5 5555332 22211 011111 35688999999655555443 45577775
No 197
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.45 E-value=1e-10 Score=107.01 Aligned_cols=195 Identities=13% Similarity=0.027 Sum_probs=123.8
Q ss_pred CCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEe-cCCeEEEEe
Q 010206 235 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLID 312 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg~i~~wd 312 (515)
..+..++++++++.+++. .++.|.+||+.+.+....+ ... ...+.......+++ .++ .++++.. .++.|.++|
T Consensus 84 ~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i-~~g--~~~~~~~~p~~i~~-~~~-~lyv~~~~~~~~v~viD 158 (328)
T 3dsm_A 84 TSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYI-ECP--DMDMESGSTEQMVQ-YGK-YVYVNCWSYQNRILKID 158 (328)
T ss_dssp SSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEE-ECT--TCCTTTCBCCCEEE-ETT-EEEEEECTTCCEEEEEE
T ss_pred CCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEE-EcC--CccccCCCcceEEE-ECC-EEEEEcCCCCCEEEEEE
Confidence 345678888888666666 6899999999876543221 110 00011124556777 344 5555544 489999999
Q ss_pred cCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-C----------CeEEEEEeeCCCCCeeeEe
Q 010206 313 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y----------MTLKLWDINMDSGPVATFQ 381 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~----------~~i~iwd~~~~~~~~~~~~ 381 (515)
+.+++... .+... .....+.++|+|++++++. + +.|.++|..+ ++....+.
T Consensus 159 ~~t~~~~~----~i~~g-------------~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t-~~v~~~~~ 220 (328)
T 3dsm_A 159 TETDKVVD----ELTIG-------------IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAET-FTVEKQFK 220 (328)
T ss_dssp TTTTEEEE----EEECS-------------SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTT-TEEEEEEE
T ss_pred CCCCeEEE----EEEcC-------------CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCC-CeEEEEEe
Confidence 99876532 12211 2346788999999777753 2 5899999875 55555554
Q ss_pred eeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceee-eccCCCceeeEEECC-CCCeeEe
Q 010206 382 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTT-LEASKNPMRRQVQTP-SRPSRPL 459 (515)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~-~~~~~~~v~~~~~~~-~~~~l~s 459 (515)
...... ...++|+|++++|+.+.. .|.+||..+++..... +.........++++| ++..+++
T Consensus 221 ~~~g~~--------------p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva 284 (328)
T 3dsm_A 221 FKLGDW--------------PSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVA 284 (328)
T ss_dssp CCTTCC--------------CEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEE
T ss_pred cCCCCC--------------ceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEE
Confidence 321110 238999999999887655 8999999876432111 222245678899999 5555566
Q ss_pred e----cCCCeEEE
Q 010206 460 G----SLSGVVRR 468 (515)
Q Consensus 460 ~----~~d~~v~l 468 (515)
. ..++.|.+
T Consensus 285 ~~~~y~~~~~V~v 297 (328)
T 3dsm_A 285 DAIDYQQQGIVYR 297 (328)
T ss_dssp ECTTSSSEEEEEE
T ss_pred cccccccCCEEEE
Confidence 5 55677776
No 198
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.45 E-value=8.7e-10 Score=99.55 Aligned_cols=234 Identities=4% Similarity=-0.050 Sum_probs=151.8
Q ss_pred CCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEec
Q 010206 235 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 313 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~ 313 (515)
..+.++++++++.++++. .++.|..+|.. ++.. . . .+......+.++++.+++ +++++...++.|..||.
T Consensus 62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~-~-----~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~ 132 (300)
T 2qc5_A 62 AKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-E-Y-----PLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTA 132 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-E-E-----ECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECT
T ss_pred CcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-E-e-----cCCCCCCCCccceECCCC-CEEEEccCCCeEEEECC
Confidence 457788999999988877 58889999987 4321 1 1 112234668999999998 77777766889999998
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccc
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD 392 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 392 (515)
. ++.. .+... .....+..+++.++|++.++... +.|..+|.. ++.. .+.....
T Consensus 133 ~-g~~~-----~~~~~----------~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~--g~~~-~~~~~~~------- 186 (300)
T 2qc5_A 133 D-GTIY-----EYDLP----------NKGSYPAFITLGSDNALWFTENQNNSIGRITNT--GKLE-EYPLPTN------- 186 (300)
T ss_dssp T-SCEE-----EEECS----------STTCCEEEEEECTTSSEEEEETTTTEEEEECTT--CCEE-EEECSST-------
T ss_pred C-CCEE-----EccCC----------CCCCCceeEEECCCCCEEEEecCCCeEEEECCC--CcEE-EeeCCCC-------
Confidence 6 4421 11111 11245789999999997766654 789998873 4332 2221111
Q ss_pred cccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCC
Q 010206 393 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGA 472 (515)
Q Consensus 393 ~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~ 472 (515)
...+..++++++|++.++....+.|.+|+. ++......+..+...+..+++.+++...++...++.|..++..
T Consensus 187 ------~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 187 ------AAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp ------TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred ------CCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence 111348999999998887777788999998 4433323334455667899999999877777666777663321
Q ss_pred CCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcEEEEe
Q 010206 473 DNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 514 (515)
Q Consensus 473 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~i~~ 514 (515)
... ...........+.+++++++|++.++.. +++..|+
T Consensus 260 g~~---~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~~i~~~~ 297 (300)
T 2qc5_A 260 NTI---QEYQLQTENAEPHGITFGKDGSVWFALK-CKIGKLN 297 (300)
T ss_dssp SCE---EEEECCSTTCCCCCEEECTTSCEEEECS-SEEEEEE
T ss_pred CcE---EEEECCccCCccceeEeCCCCCEEEEcc-CceEEeC
Confidence 111 0000111235688999999998666655 3777664
No 199
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.43 E-value=1.2e-11 Score=126.63 Aligned_cols=160 Identities=9% Similarity=0.017 Sum_probs=95.4
Q ss_pred CCeEEEEecCCCCEEEEe-CC-----CcEEEEeCCCCCcc-cceecccCccccccCCceEEEEEecCCCcEEEEEec---
Q 010206 235 YHINSISNNSDGETFISA-DD-----LRINLWNLEISNQS-FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS--- 304 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d-----~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~--- 304 (515)
..+..+.|+|||++|+.. .+ ..|++||+.++... .. .+..+...+... ++|++ ..|+..+.
T Consensus 268 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~-------~l~~~~~~~~~~-~~~dg-~~l~~~s~~~~ 338 (741)
T 1yr2_A 268 KRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT-------ALIPDLKAQWDF-VDGVG-DQLWFVSGDGA 338 (741)
T ss_dssp TCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE-------EEECSSSSCEEE-EEEET-TEEEEEECTTC
T ss_pred eEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE-------EecCCCCceEEE-EeccC-CEEEEEECCCC
Confidence 457889999999988875 33 38999999765211 11 222333344444 34887 66666655
Q ss_pred -CCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEee
Q 010206 305 -KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQV 382 (515)
Q Consensus 305 -dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~ 382 (515)
++.|.+||+.++. .. ...+ +..+...+..+.++ ++.++++.. ++..+||.+...++....+..
T Consensus 339 ~~~~l~~~d~~~~~--~~-~~~l-----------~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~ 403 (741)
T 1yr2_A 339 PLKKIVRVDLSGST--PR-FDTV-----------VPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSL 403 (741)
T ss_dssp TTCEEEEEECSSSS--CE-EEEE-----------ECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBC
T ss_pred CCCEEEEEeCCCCc--cc-cEEE-----------ecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccC
Confidence 3459999987642 00 0111 12222346677777 455666654 477777766533444444432
Q ss_pred eccccccccccccCCCccceeeEEEcCCCCEEE----EecCCCcEEEEecCCCC
Q 010206 383 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA----TGSYSNLFRVFGCSEGS 432 (515)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~----s~s~dg~i~iw~~~~~~ 432 (515)
+... .+..+.++|+++.|+ +....++|++||+.+++
T Consensus 404 ~~~~--------------~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 404 PGIG--------------SASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp SSSC--------------EEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CCCe--------------EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 2110 134788999988665 33456899999998763
No 200
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.42 E-value=1.1e-10 Score=103.50 Aligned_cols=218 Identities=7% Similarity=-0.027 Sum_probs=144.8
Q ss_pred CCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccC-CceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccc
Q 010206 245 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT-EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH 322 (515)
Q Consensus 245 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 322 (515)
.+++|+++ .++.|.+||.++++...+ +..+. ..+.++.+.|+| ++++ +.++.|..||. +++.+.+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~--------~~~~~~~~~~~~~~~pdG-~ilv--s~~~~V~~~d~-~G~~~W~- 70 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWE--------YPLEKGWECNSVAATKAG-EILF--SYSKGAKMITR-DGRELWN- 70 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEE--------EECCTTCCCCEEEECTTS-CEEE--ECBSEEEEECT-TSCEEEE-
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEE--------eCCCccCCCcCeEECCCC-CEEE--eCCCCEEEECC-CCCEEEE-
Confidence 45677887 799999999988876543 23333 467899999999 7877 45788999998 7765432
Q ss_pred cceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCcc
Q 010206 323 SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIF 400 (515)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (515)
+... ....+.++.+.++|+++++... +.|..+|. .++.+..+......... ..
T Consensus 71 ---~~~~-----------~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~--~Gk~l~~~~~~~~~~~~---------~~ 125 (276)
T 3no2_A 71 ---IAAP-----------AGCEMQTARILPDGNALVAWCGHPSTILEVNM--KGEVLSKTEFETGIERP---------HA 125 (276)
T ss_dssp ---EECC-----------TTCEEEEEEECTTSCEEEEEESTTEEEEEECT--TSCEEEEEEECCSCSSG---------GG
T ss_pred ---EcCC-----------CCccccccEECCCCCEEEEecCCCCEEEEEeC--CCCEEEEEeccCCCCcc---------cc
Confidence 2211 1135778899999999998543 55655554 47777666543221000 00
Q ss_pred ceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE--ec-CCCCCcc
Q 010206 401 DKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR--VK-GADNSAL 477 (515)
Q Consensus 401 ~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l--~~-~~~~~~~ 477 (515)
....+++.++|++|++...++.|..||.+ + +++.++.... .+..+...+++.++++++.++.|.. .+ +...+.
T Consensus 126 ~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G-~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~- 201 (276)
T 3no2_A 126 QFRQINKNKKGNYLVPLFATSEVREIAPN-G-QLLNSVKLSG-TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRR- 201 (276)
T ss_dssp SCSCCEECTTSCEEEEETTTTEEEEECTT-S-CEEEEEECSS-CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEE-
T ss_pred cccCceECCCCCEEEEecCCCEEEEECCC-C-CEEEEEECCC-CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEE-
Confidence 12256789999999999999999999987 6 5556665543 4456778899999998888877666 22 333332
Q ss_pred ccCCcccc--ccCCeeEEEEcCCCCEEEEE
Q 010206 478 DANGNAFD--FSMKLLHLAWHPSENSIACA 505 (515)
Q Consensus 478 ~~~~~~~~--~~~~i~~~~~s~~~~~la~~ 505 (515)
+...... .-..+..++..++|+.+++.
T Consensus 202 -~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 202 -VNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp -EEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred -ecCCCCCCccccccccceEcCCCCEEEEe
Confidence 1100000 11236788888888888876
No 201
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.42 E-value=6.2e-11 Score=108.39 Aligned_cols=281 Identities=9% Similarity=0.010 Sum_probs=169.1
Q ss_pred ecCCCcEEEeeeC-----CCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCC
Q 010206 122 QSANSALYLLSTN-----DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND 196 (515)
Q Consensus 122 ~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 196 (515)
|.+++..++++.. ++.|.+.|..+++..........+ .++++|||+.+
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-----------------~va~spDG~~l---------- 92 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-----------------NPVVADDGSFI---------- 92 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-----------------EEEECTTSSCE----------
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-----------------cEEECCCCCEE----------
Confidence 3566777887754 689999999999877766544322 57999999988
Q ss_pred CCCCCC----------CcccEEeeeeeecccccccccceeeeeecc------CcCCeEEEEecCCCCEEEEe--C-CCcE
Q 010206 197 SSFPPG----------GVSSLRLPVVVVTSQETNLVAGCRRIYAHA------HDYHINSISNNSDGETFISA--D-DLRI 257 (515)
Q Consensus 197 ~~~~~~----------~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~s~--~-d~~i 257 (515)
+.++ .++.|.+|| ....+. .....-+ .......++|+|||+++.++ . ++.|
T Consensus 93 --yVan~~~~r~~~G~~~~~VsviD--~~t~~v------~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V 162 (386)
T 3sjl_D 93 --AHASTVFSRIARGERTDYVEVFD--PVTLLP------TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV 162 (386)
T ss_dssp --EEEEEEEEETTEEEEEEEEEEEC--TTTCCE------EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred --EEEcccccccccCCCCCEEEEEE--CCCCeE------EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence 4443 357899998 333221 1111111 11245679999999998876 3 6899
Q ss_pred EEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCc-ccccccccceeeeccCCCccc
Q 010206 258 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ-SALCDTHSKLFEEQEAPGTRS 336 (515)
Q Consensus 258 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~ 336 (515)
.++|+.+.+....+ ... + +..+.|.+.+.+++.+.||.+.+.++.. ++........+..
T Consensus 163 sVID~~t~~vv~tI------~v~---g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~-------- 222 (386)
T 3sjl_D 163 GVVDLEGKAFKRML------DVP---D---CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-------- 222 (386)
T ss_dssp EEEETTTTEEEEEE------ECC---S---EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC--------
T ss_pred EEEECCCCcEEEEE------ECC---C---cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecc--------
Confidence 99999987654322 111 1 1123354446777888899999999876 4432110011110
Q ss_pred ccccccccee-EEEEc-cCCCEEEEEcCCeEEEEEeeCCC-CCeeeEeeecc--ccccccccccCCCccceeeEEEcCCC
Q 010206 337 FFTEIIASIS-DIKFA-RNGRHILSRDYMTLKLWDINMDS-GPVATFQVHEH--LRPKLCDLYENDSIFDKFECCLSGDG 411 (515)
Q Consensus 337 ~~~~~~~~i~-~~~~s-~~~~~l~s~~~~~i~iwd~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~ 411 (515)
-..++. ...|. ++|++++...+|+|.+.|+.... +....+..-.. ..... .......+++++++
T Consensus 223 ----~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~-------~p~g~q~~a~~~~~ 291 (386)
T 3sjl_D 223 ----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGW-------RPGGWQQVAYHRAL 291 (386)
T ss_dssp ----TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTE-------EECSSSCEEEETTT
T ss_pred ----ccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccc-------cCCCcceeeECCCC
Confidence 001121 23554 68877776666999999987421 12222220000 00000 00001257889999
Q ss_pred CEEEEecC----------CCcEEEEecCCCCcceeeeccCCCceeeEEECCCCC-eeEe-ecCCCeEEEecCC
Q 010206 412 GRVATGSY----------SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP-SRPL-GSLSGVVRRVKGA 472 (515)
Q Consensus 412 ~~l~s~s~----------dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s-~~~d~~v~l~~~~ 472 (515)
+.|+.... .+.|.+.|+++++ .+..+..- .++..++++++++ .|++ ...++.|.+++..
T Consensus 292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k-v~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~ 362 (386)
T 3sjl_D 292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGE-RLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAE 362 (386)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCC-EEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETT
T ss_pred CeEEEEeccccccccCCCCCEEEEEECCCCe-EEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence 98887643 3579999999884 43444322 2677999999997 5555 4558999985433
No 202
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.42 E-value=2.5e-11 Score=124.29 Aligned_cols=237 Identities=11% Similarity=0.074 Sum_probs=144.3
Q ss_pred CcCCeEEEEecCCCCEEEEe-C-C----CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCC
Q 010206 233 HDYHINSISNNSDGETFISA-D-D----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG 306 (515)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~s~-~-d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg 306 (515)
|...+..++|+|||++|+.+ + + ..|++||+.+++.... ..+...+..++|+|| . .|+.+..++
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~---------~~~~~~~~~~~wspD-~-~l~~~~~~~ 229 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD---------ELKWVKFSGLAWLGN-D-ALLYSRFAE 229 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE---------EEEEEESCCCEESTT-S-EEEEEECCC
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc---------cCCCceeccEEEECC-C-EEEEEEecC
Confidence 33467789999999999986 3 3 3599999997764311 111112357889999 4 455555443
Q ss_pred --------------eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-C-----CeEE
Q 010206 307 --------------SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-----MTLK 366 (515)
Q Consensus 307 --------------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~-----~~i~ 366 (515)
.|++|++.++..... ..+.. ..+...+..+.|||||++|+... + ..|+
T Consensus 230 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~--lv~~~----------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~ 297 (741)
T 1yr2_A 230 PKEGQAFQALNYNQTVWLHRLGTPQSADQ--PVFAT----------PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVH 297 (741)
T ss_dssp C--------CCCCCEEEEEETTSCGGGCE--EEECC----------TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEE
T ss_pred cccccccccCCCCCEEEEEECCCCchhCE--EEecc----------CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEE
Confidence 388899876542111 11221 11223478899999999888743 2 4899
Q ss_pred EEEeeCCC-CCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecC----CCcEEEEecCCCC-cceeeecc
Q 010206 367 LWDINMDS-GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY----SNLFRVFGCSEGS-AESTTLEA 440 (515)
Q Consensus 367 iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~----dg~i~iw~~~~~~-~~~~~~~~ 440 (515)
+||+..+. +....+..+... +... ++|+|+.|+..+. ++.|.+||+.++. .....+..
T Consensus 298 ~~d~~~~~~~~~~~l~~~~~~---------------~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~ 361 (741)
T 1yr2_A 298 VARVTNGKIGPVTALIPDLKA---------------QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE 361 (741)
T ss_dssp EEEEETTEECCCEEEECSSSS---------------CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECC
T ss_pred EEECCCCCCcccEEecCCCCc---------------eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecC
Confidence 99998521 214444433321 1133 4589998887765 3459999998642 33334455
Q ss_pred CCCceeeEEECCCCCeeEeecCCCeEEE--ec--CCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcC-----CcEE
Q 010206 441 SKNPMRRQVQTPSRPSRPLGSLSGVVRR--VK--GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS-----NSLY 511 (515)
Q Consensus 441 ~~~~v~~~~~~~~~~~l~s~~~d~~v~l--~~--~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~-----~~~~ 511 (515)
+...+..+.+. ++.++++...|+..+| ++ +.... .+. ......+..++++|+++.|+.... ..++
T Consensus 362 ~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~--~l~---~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~ 435 (741)
T 1yr2_A 362 SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAG--AVS---LPGIGSASGLSGRPGDRHAYLSFSSFTQPATVL 435 (741)
T ss_dssp CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEE--ECB---CSSSCEEEEEECCBTCSCEEEEEEETTEEEEEE
T ss_pred CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCcee--ecc---CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEE
Confidence 55566667776 6677888888998877 22 22111 111 112467889999999987774322 3466
Q ss_pred EEe
Q 010206 512 MYY 514 (515)
Q Consensus 512 i~~ 514 (515)
+|+
T Consensus 436 ~~d 438 (741)
T 1yr2_A 436 ALD 438 (741)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 203
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.39 E-value=4.6e-10 Score=102.63 Aligned_cols=314 Identities=9% Similarity=0.017 Sum_probs=176.2
Q ss_pred EEEECCCCCeEEeecC-----CCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccce
Q 010206 40 AIEFDKSGDHLATGDR-----GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (515)
Q Consensus 40 ~v~~s~~g~~lasg~~-----dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (515)
.....|+++.+.+... ++.|.+.|..+.+.. ..+..-. .+
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~-----------------------~~I~vG~------------~P 81 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVI-----------------------GMIDGGF------------LP 81 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEE-----------------------EEEEECS------------SC
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEE-----------------------EEEECCC------------CC
Confidence 3566799998888765 679999998877643 2222211 22
Q ss_pred eEEEEEeecCCCcEEEeee----------CCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCC
Q 010206 115 INKIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (515)
Q Consensus 115 v~~l~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~ 184 (515)
. +++ ++++++++++. .++.|.+||..+.+............ ......+..++++|||+
T Consensus 82 -~-va~--spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r--------~~~g~~P~~~a~spDGk 149 (386)
T 3sjl_D 82 -N-PVV--ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR--------FLVGTYPWMTSLTPDGK 149 (386)
T ss_dssp -E-EEE--CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC--------CCBSCCGGGEEECTTSS
T ss_pred -c-EEE--CCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccc--------cccCCCCceEEEcCCCC
Confidence 3 888 56788888775 36789999999998776654321000 00001112789999999
Q ss_pred ccccccccCCCCCCCCCC--CcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEE-eCCCcEEEEe
Q 010206 185 CGERNFGCASNDSSFPPG--GVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS-ADDLRINLWN 261 (515)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~--~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~d~~i~iwd 261 (515)
.+ +.+. .++.+.++| ....+. ....... .. ...+....+.+++ +.||++.+.+
T Consensus 150 ~l------------yVan~~~~~~VsVID--~~t~~v------v~tI~v~---g~-~~~~P~g~~~~~~~~~DG~~~~v~ 205 (386)
T 3sjl_D 150 TL------------LFYQFSPAPAVGVVD--LEGKAF------KRMLDVP---DC-YHIFPTAPDTFFMHCRDGSLAKVA 205 (386)
T ss_dssp EE------------EEEECSSSCEEEEEE--TTTTEE------EEEEECC---SE-EEEEEEETTEEEEEETTSCEEEEE
T ss_pred EE------------EEEEcCCCCeEEEEE--CCCCcE------EEEEECC---Cc-ceeecCCCceeEEECCCCCEEEEE
Confidence 88 5443 367899988 333221 1111000 01 1112222334444 3677777777
Q ss_pred CCCCCcccceecccCccccccCCceE-EEEEe-cCCCcEEEEEecCCeEEEEecCccccc-ccccceeeeccCCCccccc
Q 010206 262 LEISNQSFNIVDVKPANMEDLTEVIT-SAEFH-PTHCNMLAYSSSKGSIRLIDMRQSALC-DTHSKLFEEQEAPGTRSFF 338 (515)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~i~-~i~~~-p~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~ 338 (515)
+.+........ ...+.....++. ...|. ++| ++++ .+.+|.+.+.|+.+.... ......+..... ..
T Consensus 206 ~~~~g~v~~~~---~~~~~~~~~~~~~~~~~~~~dG-~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~-----~~ 275 (386)
T 3sjl_D 206 FGTEGTPEITH---TEVFHPEDEFLINHPAYSQKAG-RLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAER-----AD 275 (386)
T ss_dssp CCSSSCCEEEE---CCCCSCTTSCBCSCCEEETTTT-EEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHH-----HT
T ss_pred CCCCCeEEEee---cceeccccccccccceeEcCCC-cEEE-EeCCCEEEEEECCCCcceeecceeccccccc-----cc
Confidence 76522221100 001111112221 23564 566 4444 666899999999765421 111110110000 00
Q ss_pred cccccceeEEEEccCCCEEEEEc----------C-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEE
Q 010206 339 TEIIASISDIKFARNGRHILSRD----------Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 407 (515)
Q Consensus 339 ~~~~~~i~~~~~s~~~~~l~s~~----------~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 407 (515)
.........++++++++.++... . +.|.+.|+.+ .+.+.++..... ++++++
T Consensus 276 g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t-~kv~~~i~vg~~----------------~~~lav 338 (386)
T 3sjl_D 276 GWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEMGHE----------------IDSINV 338 (386)
T ss_dssp TEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEEE----------------ECEEEE
T ss_pred cccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCC-CeEEEEEECCCC----------------cceEEE
Confidence 00113445678899988888742 1 5799999987 788887765432 248999
Q ss_pred cCCCC-EEEE-ecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCC
Q 010206 408 SGDGG-RVAT-GSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS 453 (515)
Q Consensus 408 s~~~~-~l~s-~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~ 453 (515)
++|++ +|++ ...++.|.++|..+++ .+.+++.-. ..+.+.+++|
T Consensus 339 s~D~~~~ly~tn~~~~~VsViD~~t~k-~~~~i~~~~-~p~~l~~s~d 384 (386)
T 3sjl_D 339 SQDEKPLLYALSTGDKTLYIHDAESGE-ELRSVNQLG-HGPQVITTAD 384 (386)
T ss_dssp CSSSSCEEEEEETTTTEEEEEETTTCC-EEEEECCCC-SSCCEEEECC
T ss_pred CCCCCeEEEEEcCCCCeEEEEECCCCc-EEEEecCCC-CCceeEECCc
Confidence 99997 6665 4568999999999874 444444322 2224555554
No 204
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.38 E-value=7.8e-10 Score=100.67 Aligned_cols=242 Identities=7% Similarity=0.032 Sum_probs=148.0
Q ss_pred cCCeEEEEecCCCCEEEE-------e-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecC-CCcEEEEEec
Q 010206 234 DYHINSISNNSDGETFIS-------A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT-HCNMLAYSSS 304 (515)
Q Consensus 234 ~~~v~~~~~~~~~~~l~s-------~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~-~~~~l~~~~~ 304 (515)
-....+++|++++.++++ + .++.|..||..+++.. .+. . ....++...+.+++++++ + +++++ +.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-~~~-~--~~~~~~~~~~~~i~~~~~~g-~l~v~-~~ 90 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-VIC-K--PEVNGYGGIPAGCQCDRDAN-QLFVA-DM 90 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE-EEE-C--CEETTEECCEEEEEECSSSS-EEEEE-ET
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE-EEE-e--cccCCCCCCCceEEEecCCC-cEEEE-EC
Confidence 346789999999999988 5 6889999998765432 110 0 011224567899999999 6 55554 44
Q ss_pred CCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCC--------------eEEEEEe
Q 010206 305 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYM--------------TLKLWDI 370 (515)
Q Consensus 305 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~--------------~i~iwd~ 370 (515)
.+.|.+||.. ++..... ..... ......+.+++++++|+++++.... ...||.+
T Consensus 91 ~~~l~~~d~~-g~~~~~~---~~~~~--------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (314)
T 1pjx_A 91 RLGLLVVQTD-GTFEEIA---KKDSE--------GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCF 158 (314)
T ss_dssp TTEEEEEETT-SCEEECC---SBCTT--------SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEE
T ss_pred CCCEEEEeCC-CCEEEEE---eccCC--------CccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEE
Confidence 4578899987 5431100 00000 0111357899999999888775431 1344444
Q ss_pred eCCCCCeeeEeeeccccccccccccCCCccceeeEEEc----CCCCEEE-EecCCCcEEEEecC-CCCc----ceeeecc
Q 010206 371 NMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS----GDGGRVA-TGSYSNLFRVFGCS-EGSA----ESTTLEA 440 (515)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----~~~~~l~-s~s~dg~i~iw~~~-~~~~----~~~~~~~ 440 (515)
...++ ...+..+... ...++|+ |+++.|+ +...++.|.+|++. ++.. ....+..
T Consensus 159 ~~~g~-~~~~~~~~~~---------------~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~ 222 (314)
T 1pjx_A 159 TTDGQ-MIQVDTAFQF---------------PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 222 (314)
T ss_dssp CTTSC-EEEEEEEESS---------------EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCC
T ss_pred CCCCC-EEEeccCCCC---------------cceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCC
Confidence 43233 2222221111 2378999 9997654 44678899999986 3311 1123334
Q ss_pred CC-CceeeEEECCCCCeeEeecCCCeEEEecCC--CCCccccCCccccccCCeeEEEEcCCCCEEEEEcCC--cEEEEe
Q 010206 441 SK-NPMRRQVQTPSRPSRPLGSLSGVVRRVKGA--DNSALDANGNAFDFSMKLLHLAWHPSENSIACAASN--SLYMYY 514 (515)
Q Consensus 441 ~~-~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~--~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~--~~~i~~ 514 (515)
+. ..+..+++.++|.++++...++.|.+++-. +.. .....+...+.+++|+|+++.|.+++.+ ++..|.
T Consensus 223 ~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~-----~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 223 THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPK-----MRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCS-----EEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEe-----EEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence 43 557789999999988887677777763321 111 1111234678999999999977766654 787775
No 205
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.36 E-value=7.6e-10 Score=99.79 Aligned_cols=232 Identities=8% Similarity=0.087 Sum_probs=144.0
Q ss_pred ceEEEEECCC-CCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccccee
Q 010206 37 IISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (515)
Q Consensus 37 ~v~~v~~s~~-g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (515)
--.+..|+|+ +.++++...++.|..||..+++.. .+. .. ..+
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~------------------------~~~-~~------------~~~ 56 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ------------------------RVT-MD------------APV 56 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE------------------------EEE-CS------------SCE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE------------------------EEe-CC------------Cce
Confidence 4468899995 556667777889999998765421 111 11 558
Q ss_pred EEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCC
Q 010206 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (515)
Q Consensus 116 ~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 195 (515)
.++++ .+++. |+++. ++.|.+||..+++.........
T Consensus 57 ~~i~~--~~dG~-l~v~~-~~~l~~~d~~~g~~~~~~~~~~--------------------------------------- 93 (297)
T 3g4e_A 57 SSVAL--RQSGG-YVATI-GTKFCALNWKEQSAVVLATVDN--------------------------------------- 93 (297)
T ss_dssp EEEEE--BTTSS-EEEEE-TTEEEEEETTTTEEEEEEECCT---------------------------------------
T ss_pred EEEEE--CCCCC-EEEEE-CCeEEEEECCCCcEEEEEecCC---------------------------------------
Confidence 89999 55666 44444 5679999998876543322110
Q ss_pred CCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CC---------CcEEEEeCCCC
Q 010206 196 DSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD---------LRINLWNLEIS 265 (515)
Q Consensus 196 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d---------~~i~iwd~~~~ 265 (515)
......+++++++|+|+++++. .. ..-.+|.+...
T Consensus 94 -----------------------------------~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~ 138 (297)
T 3g4e_A 94 -----------------------------------DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD 138 (297)
T ss_dssp -----------------------------------TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT
T ss_pred -----------------------------------CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC
Confidence 0011346788899999877764 22 23455555432
Q ss_pred CcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEec--CcccccccccceeeeccCCCcccccccccc
Q 010206 266 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM--RQSALCDTHSKLFEEQEAPGTRSFFTEIIA 343 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (515)
..... +.........++|+|++..++++.+.++.|.+||+ .++.+.. .+.+.. +..+..
T Consensus 139 g~~~~--------~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~--~~~~~~---------~~~~~~ 199 (297)
T 3g4e_A 139 HHVKK--------YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISN--RRSVYK---------LEKEEQ 199 (297)
T ss_dssp SCEEE--------EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEE--EEEEEE---------CCGGGC
T ss_pred CCEEE--------EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccC--cEEEEE---------CCCCCC
Confidence 22211 12233456899999998334456666889999997 3443211 011110 111224
Q ss_pred ceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEc-CCCCEEEEec
Q 010206 344 SISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS-GDGGRVATGS 418 (515)
Q Consensus 344 ~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~s 418 (515)
....++++++|++.++... +.|..||..+ ++.+..+..+... +++++|. |+++.|+..+
T Consensus 200 ~p~g~~~d~~G~lwva~~~~~~v~~~d~~t-G~~~~~i~~p~~~---------------~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 200 IPDGMCIDAEGKLWVACYNGGRVIRLDPVT-GKRLQTVKLPVDK---------------TTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp EEEEEEEBTTSCEEEEEETTTEEEEECTTT-CCEEEEEECSSSB---------------EEEEEEESGGGCEEEEEE
T ss_pred CCCeeEECCCCCEEEEEcCCCEEEEEcCCC-ceEEEEEECCCCC---------------ceEEEEeCCCCCEEEEEc
Confidence 5788999999988777655 8899999875 7777777655322 4589998 8888766544
No 206
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.31 E-value=1.4e-08 Score=94.25 Aligned_cols=294 Identities=7% Similarity=-0.007 Sum_probs=165.4
Q ss_pred EECCCCCeEEeecC--CC---eEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeE
Q 010206 42 EFDKSGDHLATGDR--GG---RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (515)
Q Consensus 42 ~~s~~g~~lasg~~--dg---~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 116 (515)
...|+++++.+... .+ .|.+||..+++.. ..+.... .+
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~-----------------------~~i~~g~------------~p-- 69 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSIL-----------------------GHVNGGF------------LP-- 69 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEE-----------------------EEecCCC------------CC--
Confidence 44578887777653 22 7899998876632 2222111 22
Q ss_pred EEEEeecCCCcEEEeee----------CCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcc
Q 010206 117 KIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (515)
Q Consensus 117 ~l~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l 186 (515)
.+++ ++++++++++. .++.|.+||..+.+.............. .+ ..+..++++|||+.+
T Consensus 70 ~i~~--spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~--~g------~~p~~~~~spDG~~l 139 (373)
T 2mad_H 70 NPVA--AHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFD--VG------PYSWMNANTPNNADL 139 (373)
T ss_pred CeEE--CCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccc--cC------CCccceEECCCCCEE
Confidence 7888 56777888875 3678999999987765544332000000 00 011278999999998
Q ss_pred ccccccCCCCCCCCCCC--cccEEeeeeeecccccccccceeee-eeccCcCCeEEEEecCCCC-EEEEe-CCCcEEEEe
Q 010206 187 ERNFGCASNDSSFPPGG--VSSLRLPVVVVTSQETNLVAGCRRI-YAHAHDYHINSISNNSDGE-TFISA-DDLRINLWN 261 (515)
Q Consensus 187 ~~~~~~~~~~~~~~~~~--~~~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd 261 (515)
+.++. ++.|.++| +.. +.... . ... .++.+.|+++ .+++. .||.+.++|
T Consensus 140 ------------~v~n~~~~~~v~viD------~t~---~~~~~~i--~~~---~~~~~~~~~~~~~~~~~~dg~~~~vd 193 (373)
T 2mad_H 140 ------------LFFQFAAGPAVGLVV------QGG---SSDDQLL--SSP---TCYHIHPGAPSTFYLLCAQGGLAKTD 193 (373)
T ss_pred ------------EEEecCCCCeEEEEE------CCC---CEEeEEc--CCC---ceEEEEeCCCceEEEEcCCCCEEEEE
Confidence 55442 45666543 111 11111 1 011 1244555554 33343 799999999
Q ss_pred CCCCCcccceecccCccccccCCc-eEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccc
Q 010206 262 LEISNQSFNIVDVKPANMEDLTEV-ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 340 (515)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (515)
. +++.... ....+ .+ ....+ .....+.+++ ..++..+..+.+.+.|+....... ...++........ ...
T Consensus 194 ~-~g~~~~~-~~~~~-~~-~~~~p~~~~~~~~~~~-~~~~~~~~~~~v~vid~~~~~~~v--~~~~~~~~~~~~~--~~~ 264 (373)
T 2mad_H 194 H-AGGAAGA-GLVGA-ML-TAAQNLLTQPAQANKS-GRIVWPVYSGKILQADISAAGATN--KAPIDALSGGRKA--DTW 264 (373)
T ss_pred C-CCcEEEE-Eeccc-cc-cCCcceeecceeEecC-CEEEEEcCCceEEEEeccCCcceE--eeeeeecCCcccc--cce
Confidence 9 6654311 10000 01 11122 2235567776 343434477899999987543210 1112111000000 000
Q ss_pred cccceeEEEEccCCCEEEEEc-----------CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcC
Q 010206 341 IIASISDIKFARNGRHILSRD-----------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 409 (515)
Q Consensus 341 ~~~~i~~~~~s~~~~~l~s~~-----------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 409 (515)
.......+.++|+++.++... .+.|.++|+.+ .+.+.++...... ..++|+|
T Consensus 265 ~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t-~~vv~~i~~g~~p----------------~~i~~s~ 327 (373)
T 2mad_H 265 RPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQISLGHDV----------------DAISVAQ 327 (373)
T ss_pred ecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC-CEEEEEEECCCCc----------------CeEEECC
Confidence 112345578999988877742 15799999986 7777777543321 3899999
Q ss_pred CCC-EEEEec-CCCcEEEEecCCCCcc
Q 010206 410 DGG-RVATGS-YSNLFRVFGCSEGSAE 434 (515)
Q Consensus 410 ~~~-~l~s~s-~dg~i~iw~~~~~~~~ 434 (515)
||+ +++++. .++.|.+||+.+++..
T Consensus 328 Dg~~~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 328 DGGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred CCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence 999 777776 5899999999987433
No 207
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.31 E-value=1.2e-09 Score=98.90 Aligned_cols=232 Identities=10% Similarity=0.029 Sum_probs=142.8
Q ss_pred cCcCCeEEEEecCCCC-EEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010206 232 AHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 309 (515)
Q Consensus 232 ~~~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~ 309 (515)
..........|+|+++ ++++. .++.|..|+.. ++. . .+..+...+..++++++| +++++...++.|.
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~--~-------~~~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~ 110 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV--D-------VLLDATAFTNGNAVDAQQ-RLVHCEHGRRAIT 110 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE--E-------EEEESCSCEEEEEECTTS-CEEEEETTTTEEE
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE--E-------EEeCCCCccceeeECCCC-CEEEEECCCCEEE
Confidence 3445667899999998 45555 68999999874 331 1 223345678999999998 7776656668899
Q ss_pred EEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEE----Ec--------------CCeEEEEEee
Q 010206 310 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS----RD--------------YMTLKLWDIN 371 (515)
Q Consensus 310 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s----~~--------------~~~i~iwd~~ 371 (515)
+|+.. ++. ..+..... ......+..++++|+|+++++ |. .+.|..||..
T Consensus 111 ~~~~~-g~~-----~~~~~~~~-------~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~ 177 (305)
T 3dr2_A 111 RSDAD-GQA-----HLLVGRYA-------GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD 177 (305)
T ss_dssp EECTT-SCE-----EEEECEET-------TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS
T ss_pred EECCC-CCE-----EEEEeccC-------CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC
Confidence 99975 432 11111000 001134678999999998886 32 1345556554
Q ss_pred CCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCC------CcEEEEecCCCCcce--eee-ccCC
Q 010206 372 MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS------NLFRVFGCSEGSAES--TTL-EASK 442 (515)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d------g~i~iw~~~~~~~~~--~~~-~~~~ 442 (515)
+ ++.. .+. .... ...++|+||++.|+.+... +.|++|++..+. +. ..+ ....
T Consensus 178 ~-g~~~-~~~-~~~~---------------p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~ 238 (305)
T 3dr2_A 178 G-SPLQ-RMA-DLDH---------------PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPD 238 (305)
T ss_dssp S-CCCE-EEE-EESS---------------EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSS
T ss_pred C-CcEE-EEe-cCCC---------------CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCC
Confidence 3 3332 222 1111 2378999999987766554 789999987543 21 111 1123
Q ss_pred CceeeEEECCCCCeeEeecCCCeEEEecC-CCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcEEEEe
Q 010206 443 NPMRRQVQTPSRPSRPLGSLSGVVRRVKG-ADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 514 (515)
Q Consensus 443 ~~v~~~~~~~~~~~l~s~~~d~~v~l~~~-~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~i~~ 514 (515)
.....+++.++|.+.++ +.++ |.+++- .+.. ..+.....+..++|+|+++.|.+++.++++-+.
T Consensus 239 ~~pdgi~~d~~G~lwv~-~~~g-v~~~~~~g~~~------~~~~~~~~~~~~~f~~d~~~L~it~~~~l~~~~ 303 (305)
T 3dr2_A 239 GLPDGFCVDRGGWLWSS-SGTG-VCVFDSDGQLL------GHIPTPGTASNCTFDQAQQRLFITGGPCLWMLP 303 (305)
T ss_dssp SCCCSEEECTTSCEEEC-CSSE-EEEECTTSCEE------EEEECSSCCCEEEECTTSCEEEEEETTEEEEEE
T ss_pred CCCCeEEECCCCCEEEe-cCCc-EEEECCCCCEE------EEEECCCceeEEEEeCCCCEEEEEcCCeEEEEE
Confidence 34567899999985444 4555 444221 1111 011122358899999999999998888887664
No 208
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.30 E-value=2e-09 Score=96.97 Aligned_cols=228 Identities=10% Similarity=0.007 Sum_probs=140.7
Q ss_pred CcCCeEEEEecCCCCEE-EEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEE
Q 010206 233 HDYHINSISNNSDGETF-ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 310 (515)
Q Consensus 233 ~~~~v~~~~~~~~~~~l-~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~ 310 (515)
+..-..+..|++++..| ++. .++.|..||..+.... . ......+.+++++|++ +++++ . ++.|.+
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~--~--------~~~~~~~~~i~~~~dG-~l~v~-~-~~~l~~ 77 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ--R--------VTMDAPVSSVALRQSG-GYVAT-I-GTKFCA 77 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE--E--------EECSSCEEEEEEBTTS-SEEEE-E-TTEEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE--E--------EeCCCceEEEEECCCC-CEEEE-E-CCeEEE
Confidence 33455688999965554 455 6899999999865431 1 1134678999999999 65554 3 678999
Q ss_pred EecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc----------CCeEEEEEeeCCCCCeeeE
Q 010206 311 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----------YMTLKLWDINMDSGPVATF 380 (515)
Q Consensus 311 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~----------~~~i~iwd~~~~~~~~~~~ 380 (515)
||..+++.. .+...... .....+..++++|+|+++++.. ...-.||.+...++ +..+
T Consensus 78 ~d~~~g~~~-----~~~~~~~~-------~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~ 144 (297)
T 3g4e_A 78 LNWKEQSAV-----VLATVDND-------KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKY 144 (297)
T ss_dssp EETTTTEEE-----EEEECCTT-------CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEE
T ss_pred EECCCCcEE-----EEEecCCC-------CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC-EEEE
Confidence 999876531 11111000 0113578899999999777532 12346776664233 2222
Q ss_pred eeeccccccccccccCCCccceeeEEEcCCCCEE-EEecCCCcEEEEecC--CCCcc----eeeeccCCCceeeEEECCC
Q 010206 381 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV-ATGSYSNLFRVFGCS--EGSAE----STTLEASKNPMRRQVQTPS 453 (515)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~s~dg~i~iw~~~--~~~~~----~~~~~~~~~~v~~~~~~~~ 453 (515)
...... ...++|+||++.| ++.+.++.|.+|++. ++... ...+..+......+++.++
T Consensus 145 ~~~~~~---------------pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~ 209 (297)
T 3g4e_A 145 FDQVDI---------------SNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAE 209 (297)
T ss_dssp EEEESB---------------EEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTT
T ss_pred eecccc---------------ccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCC
Confidence 222111 2379999999876 456678899999873 44211 1222333456678999999
Q ss_pred CCeeEeecCCCeEEEecC--CCCCccccCCccccccCCeeEEEEc-CCCCEEEEEc
Q 010206 454 RPSRPLGSLSGVVRRVKG--ADNSALDANGNAFDFSMKLLHLAWH-PSENSIACAA 506 (515)
Q Consensus 454 ~~~l~s~~~d~~v~l~~~--~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~la~~~ 506 (515)
|.+.++...++.|..++- .+.. .........+++++|. ||++.|.+++
T Consensus 210 G~lwva~~~~~~v~~~d~~tG~~~-----~~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 210 GKLWVACYNGGRVIRLDPVTGKRL-----QTVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp SCEEEEEETTTEEEEECTTTCCEE-----EEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred CCEEEEEcCCCEEEEEcCCCceEE-----EEEECCCCCceEEEEeCCCCCEEEEEc
Confidence 987777766776766321 1211 1111124678999998 8998887655
No 209
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.30 E-value=1.3e-09 Score=101.71 Aligned_cols=295 Identities=7% Similarity=0.014 Sum_probs=166.6
Q ss_pred CCCCeEEeecCC-----CeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEE
Q 010206 45 KSGDHLATGDRG-----GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (515)
Q Consensus 45 ~~g~~lasg~~d-----g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~ 119 (515)
++++.+++.... +.|.++|..+.+.+ ..+..-. .+ .+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv-----------------------~~I~vG~------------~P--gia 124 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRIL-----------------------GMTDGGF------------LP--HPV 124 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEE-----------------------EEEEECS------------SC--EEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEE-----------------------EEEECCC------------CC--ceE
Confidence 577766665442 69999999877643 2222111 23 788
Q ss_pred EeecCCCcEEEeee----------CCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 120 WCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 120 ~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
+ ++++++++++. .++.|.++|..+.+............... ...+..+.++|||+.+
T Consensus 125 ~--SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~--------g~~P~~~~~spDGk~l--- 191 (426)
T 3c75_H 125 A--AEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLV--------GTYQWMNALTPDNKNL--- 191 (426)
T ss_dssp E--CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB--------SCCGGGSEECTTSSEE---
T ss_pred E--CCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccccc--------CCCcceEEEcCCCCEE---
Confidence 8 56777888875 46789999999988776554320000000 0011178999999998
Q ss_pred cccCCCCCCCCCC--CcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCC-CEEEEe-CCCcEEEEeCCCC
Q 010206 190 FGCASNDSSFPPG--GVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEIS 265 (515)
Q Consensus 190 ~~~~~~~~~~~~~--~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~ 265 (515)
+.+. .++.|.+.| ....+. ...+..+. +....|++ ..+++. .||.+.+.+..+.
T Consensus 192 ---------yV~n~~~~~~VsVID--~~t~kv------v~~I~v~g-----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~ 249 (426)
T 3c75_H 192 ---------LFYQFSPAPAVGVVD--LEGKTF------DRMLDVPD-----CYHIFPASPTVFYMNCRDGSLARVDFADG 249 (426)
T ss_dssp ---------EEEECSSSCEEEEEE--TTTTEE------EEEEECCS-----EEEEEEEETTEEEEEETTSSEEEEECCTT
T ss_pred ---------EEEecCCCCeEEEEE--CCCCeE------EEEEEcCC-----ceeeccCCCcEEEEEcCCCCEEEEECCCC
Confidence 5543 257888888 332221 11111111 11222322 333333 6777777776433
Q ss_pred CcccceecccCccccccCCce-EEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccc
Q 010206 266 NQSFNIVDVKPANMEDLTEVI-TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 344 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~i-~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (515)
+.... .. ..+.....++ ..+.+.+++ ..++.....+.+.+.|+....... ...+....... .........
T Consensus 250 ~v~~~-~~---~~~~v~~~p~~~~~~~~~dg-~~~~~~s~~g~V~ViD~~~~~~~v--~~~~~~~~~~~--i~~g~~p~g 320 (426)
T 3c75_H 250 ETKVT-NT---EVFHTEDELLINHPAFSLRS-GRLVWPTYTGKIFQADLTAEGATF--RAPIEALTEAE--RADDWRPGG 320 (426)
T ss_dssp CCEEE-EC---CCCSCTTSCBCSCCEECTTT-CEEEEEBTTSEEEEEEECSSCEEE--CCCEESSCTTT--GGGTEEECS
T ss_pred cEEEE-ee---eeeccCCCceeeEeeecCCC-CEEEEEeCCCcEEEEeccCCceEE--eeeeeeccccc--cccccccCC
Confidence 22110 00 0011011111 235678888 555556778899999986543211 11111100000 000001122
Q ss_pred eeEEEEccCCCEEEEEc-----------CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCC-
Q 010206 345 ISDIKFARNGRHILSRD-----------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG- 412 (515)
Q Consensus 345 i~~~~~s~~~~~l~s~~-----------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~- 412 (515)
...++++|+++.++... .+.|.+.|+.+ .+.+.++...... ..++|+|||+
T Consensus 321 ~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T-~kvv~~I~vg~~P----------------~gia~spDg~~ 383 (426)
T 3c75_H 321 WQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET-GERINKIELGHEI----------------DSINVSQDAEP 383 (426)
T ss_dssp SSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEEEE----------------CEEEECCSSSC
T ss_pred ceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC-CeEEEEEECCCCc----------------CeEEEccCCCE
Confidence 33468999988777642 15799999997 8888888654422 3899999999
Q ss_pred EEEEec-CCCcEEEEecCCCCcceeee
Q 010206 413 RVATGS-YSNLFRVFGCSEGSAESTTL 438 (515)
Q Consensus 413 ~l~s~s-~dg~i~iw~~~~~~~~~~~~ 438 (515)
++++.. .++.|.++|+.+++ .+.++
T Consensus 384 ~lyv~n~~s~~VsVID~~t~k-vv~tI 409 (426)
T 3c75_H 384 LLYALSAGTQTLHIYDAATGE-ELRSV 409 (426)
T ss_dssp EEEEEETTTTEEEEEETTTCC-EEEEE
T ss_pred EEEEEcCCCCeEEEEECCCCC-EEEEe
Confidence 888777 59999999999884 43444
No 210
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.30 E-value=3.1e-09 Score=100.07 Aligned_cols=268 Identities=11% Similarity=0.111 Sum_probs=154.9
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
.....|+| ++++.++++...++.|++||..++.+........ .+ .++++++++.+
T Consensus 131 ~~P~~la~--d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~----------------~~-~ia~~~~g~~l------ 185 (409)
T 3hrp_A 131 KYMWGIAA--VGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK----------------GG-KPAVTKDKQRV------ 185 (409)
T ss_dssp CCEEEEEE--CSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC----------------BC-BCEECTTSSEE------
T ss_pred CCceEEEE--eCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC----------------CC-ceeEecCCCcE------
Confidence 35778999 5667666666777999999999887766544321 11 36888999876
Q ss_pred CCCCCCCCCCCcc--cEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 193 ASNDSSFPPGGVS--SLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 193 ~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
+.+..++ .|.+++ ... . ................+.+++++|++..|..+ .++.|+.||..+....
T Consensus 186 ------~~~d~~~~~~I~~~d--~~~--~-~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~- 253 (409)
T 3hrp_A 186 ------YSIGWEGTHTVYVYM--KAS--G-WAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT- 253 (409)
T ss_dssp ------EEEBSSTTCEEEEEE--GGG--T-TCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE-
T ss_pred ------EEEecCCCceEEEEE--cCC--C-ceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE-
Confidence 5555544 566655 211 1 11001101001144667889999954445446 6889999999865421
Q ss_pred ceecccCccccccCCce-E-EEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeecc-CCCcc--ccccccccc
Q 010206 270 NIVDVKPANMEDLTEVI-T-SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE-APGTR--SFFTEIIAS 344 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i-~-~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~ 344 (515)
++... ...++...- . .++|+|++..++++-..++.|+.|+..... ..+.... ..... ......-..
T Consensus 254 -~~~~~--~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~------~~~~g~~~~~g~~dg~~~~~~~~~ 324 (409)
T 3hrp_A 254 -LIKQL--ELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGEC------EWFCGSATQKTVQDGLREEALFAQ 324 (409)
T ss_dssp -EEEEC--CCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCE------EEEEECTTCCSCBCEEGGGCBCSS
T ss_pred -EEecc--cccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCE------EEEEeCCCCCCcCCCcccccEeCC
Confidence 11000 011122221 3 999999643777777778999999975431 1111111 00000 000001134
Q ss_pred eeEEEEccCCCEEEEEc-C-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCc
Q 010206 345 ISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 422 (515)
Q Consensus 345 i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~ 422 (515)
...++++|+|+++++-. . +.|+.|++.. + .+.++.++...............+.....++++++|.++++-..+++
T Consensus 325 P~gia~d~dG~lyvad~~~~~~I~~~~~~~-G-~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~ 402 (409)
T 3hrp_A 325 PNGMTVDEDGNFYIVDGFKGYCLRKLDILD-G-YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKA 402 (409)
T ss_dssp EEEEEECTTCCEEEEETTTTCEEEEEETTT-T-EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCE
T ss_pred CeEEEEeCCCCEEEEeCCCCCEEEEEECCC-C-EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCe
Confidence 78999999999777766 5 8999999753 3 35555554211100000000111223458999999988888888889
Q ss_pred EEEEec
Q 010206 423 FRVFGC 428 (515)
Q Consensus 423 i~iw~~ 428 (515)
|+.+++
T Consensus 403 Ir~i~~ 408 (409)
T 3hrp_A 403 IRKYAV 408 (409)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 988775
No 211
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.29 E-value=8.5e-10 Score=101.66 Aligned_cols=271 Identities=7% Similarity=0.003 Sum_probs=157.9
Q ss_pred cceEEEEECCCCCeEEeec--CCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccc
Q 010206 36 DIISAIEFDKSGDHLATGD--RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (515)
Q Consensus 36 ~~v~~v~~s~~g~~lasg~--~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (515)
..+..++++|+|+++++.. .++.++||.+.+++.. .+ |... .....|- .
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-----~~----------p~~~--~~~~~~~------------~ 67 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-----PF----------PPQS--GNAIITF------------D 67 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-----ES----------CCCC--SSCCCCC------------S
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-----cC----------CCcc--cCcccce------------e
Confidence 5789999999999988853 2343667776533211 00 0000 0011222 5
Q ss_pred eeEEEEEeecCCCcEEEeeeC-----CCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccc
Q 010206 114 KINKIRWCQSANSALYLLSTN-----DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (515)
Q Consensus 114 ~v~~l~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~ 188 (515)
.+..+++ ++++.++++-.. ++.|.+||+.+++..........
T Consensus 68 ~p~gv~~--d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~------------------------------- 114 (343)
T 2qe8_A 68 TVLGIKS--DGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPP------------------------------- 114 (343)
T ss_dssp CEEEEEE--CSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTT-------------------------------
T ss_pred EeeEEEE--cCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChh-------------------------------
Confidence 6899999 556655554333 57899999998875444332100
Q ss_pred ccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEE-EEe----CCCcEEEEeCC
Q 010206 189 NFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF-ISA----DDLRINLWNLE 263 (515)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~----~d~~i~iwd~~ 263 (515)
...+...+..+++++++..+ ++. .++.|.+||+.
T Consensus 115 -----------------------------------------~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~ 153 (343)
T 2qe8_A 115 -----------------------------------------ITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQ 153 (343)
T ss_dssp -----------------------------------------TSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETT
T ss_pred -----------------------------------------hcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECC
Confidence 00122345678888764444 442 36889999998
Q ss_pred CCCcccceecccCccccccCCceE-EEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccc
Q 010206 264 ISNQSFNIVDVKPANMEDLTEVIT-SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 342 (515)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~i~-~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (515)
+++.. .+ +.+|..... ...+.+++ ..+.+.+.++.++.|..
T Consensus 154 ~g~~~-r~-------~~~~~~~~~~~~~~~~~g-~~~~~~~~~g~~~~~~~----------------------------- 195 (343)
T 2qe8_A 154 TGLAA-RV-------LQGYPGIAPEDIDLVIDG-VPVQIGQPDGTVIRPHL----------------------------- 195 (343)
T ss_dssp TCCEE-EE-------CTTCTTTSCCSCCCEETT-EECBEECTTSCEECCCC-----------------------------
T ss_pred CCCEE-EE-------ecCCCcccccccceeECC-EEEEeccCCCceeceec-----------------------------
Confidence 65432 21 122211100 13455566 66777777777765531
Q ss_pred cceeEEEEccCCCEEEEEcC--CeEEEEEeeC--CCCC-----ee--eEeeeccccccccccccCCCccceeeEEEcCCC
Q 010206 343 ASISDIKFARNGRHILSRDY--MTLKLWDINM--DSGP-----VA--TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 411 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~--~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 411 (515)
.+..++|+|+|+.|+.++. ..+..++... .... .. ...++... ...++++++|
T Consensus 196 -~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~---------------pdgia~d~~G 259 (343)
T 2qe8_A 196 -GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPI---------------CDGISIDKDH 259 (343)
T ss_dssp -CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCS---------------CSCEEECTTC
T ss_pred -ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCC---------------CceEEECCCC
Confidence 2578999999998888754 4555444321 0110 00 11111111 1279999999
Q ss_pred CEEEEecCCCcEEEEecCCCCcceeeec-cCCCceeeEEECCCCCeeEeecCCC
Q 010206 412 GRVATGSYSNLFRVFGCSEGSAESTTLE-ASKNPMRRQVQTPSRPSRPLGSLSG 464 (515)
Q Consensus 412 ~~l~s~s~dg~i~iw~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~ 464 (515)
+++++...++.|.+||.+++ ....... .+...+..+++.+++.++++.+..+
T Consensus 260 ~l~va~~~~~~V~~~d~~~G-~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 260 NIYVGDLAHSAIGVITSADR-AYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLH 312 (343)
T ss_dssp CEEEEEGGGTEEEEEETTTT-EEEEEEECGGGSCEEEEEECTTSCEEEEECCGG
T ss_pred CEEEEccCCCeEEEEECCCC-CEEEEEECCceecCCeeEECCCCcEEEEeCccc
Confidence 99999999999999998555 2322222 1245578999999988777765443
No 212
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.29 E-value=1.4e-09 Score=98.43 Aligned_cols=232 Identities=12% Similarity=0.044 Sum_probs=141.8
Q ss_pred ccccceEEEEECCCCC-eEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 33 QEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~-~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
..........|+|+|+ +++++..++.|..|+.. ++. ..+..+.
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~------------------------~~~~~~~----------- 85 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV------------------------DVLLDAT----------- 85 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE------------------------EEEEESC-----------
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE------------------------EEEeCCC-----------
Confidence 4556678899999998 66777788999999873 321 1122222
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
..++.+++ +++++++++...++.|.+|+.. ++.........
T Consensus 86 -~~~~gl~~--d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~----------------------------------- 126 (305)
T 3dr2_A 86 -AFTNGNAV--DAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYA----------------------------------- 126 (305)
T ss_dssp -SCEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEEECEET-----------------------------------
T ss_pred -CccceeeE--CCCCCEEEEECCCCEEEEECCC-CCEEEEEeccC-----------------------------------
Confidence 45888999 5667655555556789999875 44322211000
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEE----e-C-------------
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS----A-D------------- 253 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s----~-~------------- 253 (515)
......+++++++++|+++++ | .
T Consensus 127 ---------------------------------------~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~ 167 (305)
T 3dr2_A 127 ---------------------------------------GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELA 167 (305)
T ss_dssp ---------------------------------------TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSS
T ss_pred ---------------------------------------CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccC
Confidence 000133556777777777765 2 1
Q ss_pred CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC------CeEEEEecCcccccccccceee
Q 010206 254 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK------GSIRLIDMRQSALCDTHSKLFE 327 (515)
Q Consensus 254 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~ 327 (515)
.+.|..+|..+++... +. .......++|+|++ +.|+.+... +.|.+|++..+.+ .. ...+.
T Consensus 168 ~~~v~~~d~~~g~~~~---------~~-~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l-~~-~~~~~ 234 (305)
T 3dr2_A 168 HHSVYRLPPDGSPLQR---------MA-DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGAL-HD-RRHFA 234 (305)
T ss_dssp CEEEEEECSSSCCCEE---------EE-EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEE-EE-EEEEE
T ss_pred CCeEEEEcCCCCcEEE---------Ee-cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCc-cC-CeEEE
Confidence 2456667765443221 11 23456789999998 766666654 7899999875431 10 11111
Q ss_pred eccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEE
Q 010206 328 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 407 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 407 (515)
.. .......++++++|++.++. .+.|.+|+.. ++.+..+..+.. +..++|
T Consensus 235 ~~-----------~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~~--g~~~~~~~~~~~----------------~~~~~f 284 (305)
T 3dr2_A 235 SV-----------PDGLPDGFCVDRGGWLWSSS-GTGVCVFDSD--GQLLGHIPTPGT----------------ASNCTF 284 (305)
T ss_dssp CC-----------SSSCCCSEEECTTSCEEECC-SSEEEEECTT--SCEEEEEECSSC----------------CCEEEE
T ss_pred EC-----------CCCCCCeEEECCCCCEEEec-CCcEEEECCC--CCEEEEEECCCc----------------eeEEEE
Confidence 00 11335678899999955554 4458888874 666666654432 237999
Q ss_pred cCCCCEEEEecCCC
Q 010206 408 SGDGGRVATGSYSN 421 (515)
Q Consensus 408 s~~~~~l~s~s~dg 421 (515)
+++++.|+.++.++
T Consensus 285 ~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 285 DQAQQRLFITGGPC 298 (305)
T ss_dssp CTTSCEEEEEETTE
T ss_pred eCCCCEEEEEcCCe
Confidence 99999888777654
No 213
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.28 E-value=3.8e-10 Score=114.43 Aligned_cols=160 Identities=8% Similarity=0.038 Sum_probs=95.1
Q ss_pred CcCCeEEEEecCCCCEEEEe--C---CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC--
Q 010206 233 HDYHINSISNNSDGETFISA--D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-- 305 (515)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~s~--~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-- 305 (515)
|...+..+.|+||+++|+.. . ...|+++|+.++..... .+..+....... +++++..+++....+
T Consensus 232 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~-------~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~ 303 (693)
T 3iuj_A 232 QHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLL-------TVQGDLDADVSL-VDNKGSTLYLLTNRDAP 303 (693)
T ss_dssp GCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCE-------EEECSSSSCEEE-EEEETTEEEEEECTTCT
T ss_pred CCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceE-------EEeCCCCceEEE-EeccCCEEEEEECCCCC
Confidence 34456788999999988653 2 35899999986642222 233344444554 666663555555543
Q ss_pred -CeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc--C--CeEEEEEeeCCCCCeeeE
Q 010206 306 -GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y--MTLKLWDINMDSGPVATF 380 (515)
Q Consensus 306 -g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~--~~i~iwd~~~~~~~~~~~ 380 (515)
+.|..+|+.++... ..+. +..|...+. .|+++++.|+... + ..|++||+. +.....+
T Consensus 304 ~~~l~~~d~~~~~~~--~~~~------------l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~--g~~~~~l 365 (693)
T 3iuj_A 304 NRRLVTVDAANPGPA--HWRD------------LIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE--GKRVREV 365 (693)
T ss_dssp TCEEEEEETTSCCGG--GCEE------------EECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT--SCEEEEE
T ss_pred CCEEEEEeCCCCCcc--ccEE------------EecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC--CCeeEEe
Confidence 67889998775421 0111 122223343 8899898887643 3 378888876 3333333
Q ss_pred eeeccccccccccccCCCccceeeEEEcCCCCEEEEecCC----CcEEEEecCCCC
Q 010206 381 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS----NLFRVFGCSEGS 432 (515)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d----g~i~iw~~~~~~ 432 (515)
...... .+..+.++++++.|+....+ +.++.||+.+++
T Consensus 366 ~~p~~~--------------~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 366 ALPGLG--------------SVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp CCSSSS--------------EEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred ecCCCc--------------eEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 322110 12356677888766644433 789999998763
No 214
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.25 E-value=1.9e-10 Score=105.60 Aligned_cols=179 Identities=9% Similarity=0.108 Sum_probs=121.8
Q ss_pred CeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccc--eecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEec
Q 010206 236 HINSISNNSDGETFISADDLRINLWNLEISNQSFN--IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 313 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~ 313 (515)
.++.+++++...++++|....+++|++........ -.+..+.....+.. |+.++| ++ ..|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~-~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HG-DQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ET-TEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CC-CEEEEE-cCCcEEEEEc
Confidence 68899999999999998444677798764331100 00011111223556 999999 77 788888 8899999999
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEE-cCCeEEEEEeeCCCCCeeeEeeeccccccccc
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCD 392 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 392 (515)
++..... . ...|..++.++.+.+.. ++++ ++|.|.+||+.. +.... +...
T Consensus 114 ~sl~~~~----~------------~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~-~~~~~----~~~~------ 164 (388)
T 1xip_A 114 EELSEFR----T------------VTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRT-KSTKQ----LAQN------ 164 (388)
T ss_dssp SSTTCEE----E------------EEECSSCEEEEEECSSE--EEEEETTSEEEEEETTT-CCEEE----EEES------
T ss_pred hhhhccC----c------------cceeecceeeEEecCCC--EEEEECCCCEEEEEccC-Ccccc----ccCC------
Confidence 8754211 1 12233557777776542 5554 569999999985 44332 1111
Q ss_pred cccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc-eeee------c---cCCCceeeEEECCCCCeeEe
Q 010206 393 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE-STTL------E---ASKNPMRRQVQTPSRPSRPL 459 (515)
Q Consensus 393 ~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~-~~~~------~---~~~~~v~~~~~~~~~~~l~s 459 (515)
|.+++|||+| ++.|..||++++|+...+... ..++ . +|...|.++.|.+++.++++
T Consensus 165 ---------Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 165 ---------VTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp ---------EEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred ---------ceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 5699999999 677899999999988765321 3344 3 47788999999999998876
No 215
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.25 E-value=2e-08 Score=93.14 Aligned_cols=294 Identities=6% Similarity=-0.097 Sum_probs=162.1
Q ss_pred cCCCcEEEeeeC--CC---eEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCC
Q 010206 123 SANSALYLLSTN--DK---TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS 197 (515)
Q Consensus 123 ~~~~~~l~~~~~--d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 197 (515)
.+++.+++++.. .. +|.++|..+++......... .+ .++++|||+.+.+...... .
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~----------------~p-~i~~spDg~~lyv~n~~~~--~ 89 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF----------------LP-NPVAAHSGSEFALASTSFS--R 89 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCC----------------CC-CeEECCCCCEEEEEecccc--c
Confidence 355566666543 22 88999999988654433221 12 7899999998822110000 0
Q ss_pred CCCCCCcccEEeeeeeecccccccccce--eeeeeccCcCCeEEEEecCCCCEEEEe--C-CCcEEEEeCCCCCccccee
Q 010206 198 SFPPGGVSSLRLPVVVVTSQETNLVAGC--RRIYAHAHDYHINSISNNSDGETFISA--D-DLRINLWNLEISNQSFNIV 272 (515)
Q Consensus 198 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~--~-d~~i~iwd~~~~~~~~~~~ 272 (515)
...+..++.+.++| ....+....... ...+ .+......+.|+|||++|+++ . ++.|.++| .+.+....++
T Consensus 90 ~~rg~~~~~v~viD--~~t~~~~~~i~~~~~~~~--~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i 164 (373)
T 2mad_H 90 IAKGKRTDYVEVFD--PVTFLPIADIELPDAPRF--DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLL 164 (373)
T ss_pred cccCCCCCeEEEEE--CCCCcEEEEEECCCcccc--ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEc
Confidence 00112467888888 332221100000 0000 011235589999999999986 3 58899999 8765432101
Q ss_pred cccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccc-eeEEEEc
Q 010206 273 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS-ISDIKFA 351 (515)
Q Consensus 273 ~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~s 351 (515)
. .. .++.+.|++.+.+++.+.||.+.++|. +++.... ..... .+ ....+ .....+.
T Consensus 165 -------~-~~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~----~~~~~------~~-~~~~p~~~~~~~~ 221 (373)
T 2mad_H 165 -------S-SP---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA----GLVGA------ML-TAAQNLLTQPAQA 221 (373)
T ss_pred -------C-CC---ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE----Eeccc------cc-cCCcceeecceeE
Confidence 1 11 135566776567788888999999999 7654311 00000 00 00011 1234566
Q ss_pred cCCCE-EEEEcCCeEEEEEeeCCC-CCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecC----------
Q 010206 352 RNGRH-ILSRDYMTLKLWDINMDS-GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY---------- 419 (515)
Q Consensus 352 ~~~~~-l~s~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~---------- 419 (515)
+++.. ++....+.+.+.|+.... ..+..+........ .. .........++++||++.|+.+..
T Consensus 222 ~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~-~~----~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~ 296 (373)
T 2mad_H 222 NKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRK-AD----TWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAA 296 (373)
T ss_pred ecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCccc-cc----ceecCceEeEEECCCCCEEEEEeccCCcccccCC
Confidence 65544 344444889999986421 11222211110000 00 000001124789999998777543
Q ss_pred CCcEEEEecCCCCcceeeeccCCCceeeEEECCCCC-eeEeec-CCCeEEEec
Q 010206 420 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP-SRPLGS-LSGVVRRVK 470 (515)
Q Consensus 420 dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~-~d~~v~l~~ 470 (515)
++.|.++|+.++ +.+..+... .....++++|+++ .++++. .++.|.+++
T Consensus 297 ~~~V~VID~~t~-~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD 347 (373)
T 2mad_H 297 AKEVTSVTGLVG-QTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYD 347 (373)
T ss_pred CCeEEEEECCCC-EEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEE
Confidence 357999999987 444555432 2577999999999 677776 488888844
No 216
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.22 E-value=7.4e-09 Score=94.57 Aligned_cols=144 Identities=13% Similarity=0.078 Sum_probs=87.8
Q ss_pred CCeEEEEecCCCCEEEEe-CC------CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEE-EEEecCC
Q 010206 235 YHINSISNNSDGETFISA-DD------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML-AYSSSKG 306 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l-~~~~~dg 306 (515)
..+++++++|+|+++++. .+ +.|..++ +++ ... +.........++|+|++ +.+ ++.+.++
T Consensus 134 ~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~-~~~--------~~~~~~~~~~i~~s~dg-~~lyv~~~~~~ 201 (326)
T 2ghs_A 134 NRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGK-VTK--------LFADISIPNSICFSPDG-TTGYFVDTKVN 201 (326)
T ss_dssp EEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTE-EEE--------EEEEESSEEEEEECTTS-CEEEEEETTTC
T ss_pred CCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCc-EEE--------eeCCCcccCCeEEcCCC-CEEEEEECCCC
Confidence 356788999999877765 22 3455555 222 211 11223456789999998 555 4445678
Q ss_pred eEEEEecC--cc-cccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEee
Q 010206 307 SIRLIDMR--QS-ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV 382 (515)
Q Consensus 307 ~i~~wd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~ 382 (515)
.|.+||+. ++ .... ...+.. +.........++++++|.+.++... +.|.+||.. ++.+..+..
T Consensus 202 ~I~~~d~~~~~Gl~~~~--~~~~~~---------~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~--g~~~~~i~~ 268 (326)
T 2ghs_A 202 RLMRVPLDARTGLPTGK--AEVFID---------STGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD--GNHIARYEV 268 (326)
T ss_dssp EEEEEEBCTTTCCBSSC--CEEEEE---------CTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT--CCEEEEEEC
T ss_pred EEEEEEcccccCCcccC--ceEEEE---------CCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC--CCEEEEEEC
Confidence 99999986 44 3211 111111 0111234678999999987777644 889999873 566665554
Q ss_pred eccccccccccccCCCccceeeEEEc-CCCCEEEEec
Q 010206 383 HEHLRPKLCDLYENDSIFDKFECCLS-GDGGRVATGS 418 (515)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~s 418 (515)
+... +++++|+ ++++.|+.++
T Consensus 269 ~~~~---------------~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 269 PGKQ---------------TTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp SCSB---------------EEEEEEESTTSCEEEEEE
T ss_pred CCCC---------------cEEEEEecCCCCEEEEEe
Confidence 3322 4589998 8888765444
No 217
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.21 E-value=2.6e-08 Score=90.92 Aligned_cols=225 Identities=12% Similarity=0.025 Sum_probs=134.8
Q ss_pred CeEEEEecCCCCE-EEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEec
Q 010206 236 HINSISNNSDGET-FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 313 (515)
Q Consensus 236 ~v~~~~~~~~~~~-l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~ 313 (515)
...+..|+|++.. +++. .++.|..||..+++.. . + .....+.+++++|++ +++++ +. ..|.+||.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~--~-------~-~~~~~v~~i~~~~dg-~l~v~-~~-~gl~~~d~ 116 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT--V-------H-ALPFMGSALAKISDS-KQLIA-SD-DGLFLRDT 116 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE--E-------E-ECSSCEEEEEEEETT-EEEEE-ET-TEEEEEET
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE--E-------E-ECCCcceEEEEeCCC-eEEEE-EC-CCEEEEEC
Confidence 3567889997554 4455 6899999998765321 1 1 124578999999998 66664 44 45999998
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-----CeEEEEEeeCCCCCeeeEeeeccccc
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-----MTLKLWDINMDSGPVATFQVHEHLRP 388 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-----~~i~iwd~~~~~~~~~~~~~~~~~~~ 388 (515)
.+++.. .+..... ......+.+++++|+|+++++... ....||.+.. ++. ..+......
T Consensus 117 ~~g~~~-----~~~~~~~-------~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~-g~~-~~~~~~~~~-- 180 (326)
T 2ghs_A 117 ATGVLT-----LHAELES-------DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK-GKV-TKLFADISI-- 180 (326)
T ss_dssp TTCCEE-----EEECSST-------TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET-TEE-EEEEEEESS--
T ss_pred CCCcEE-----EEeeCCC-------CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeC-CcE-EEeeCCCcc--
Confidence 776531 1111000 001135889999999997776431 2344555542 432 222211111
Q ss_pred cccccccCCCccceeeEEEcCCCCEEE-EecCCCcEEEEecC--CC-Cc----ceeeeccCCCceeeEEECCCCCeeEee
Q 010206 389 KLCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGCS--EG-SA----ESTTLEASKNPMRRQVQTPSRPSRPLG 460 (515)
Q Consensus 389 ~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~s~dg~i~iw~~~--~~-~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~ 460 (515)
...++|+||++.|+ +.+.++.|.+|++. ++ .. ....+.........+++.++|.+.++.
T Consensus 181 -------------~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~ 247 (326)
T 2ghs_A 181 -------------PNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNAR 247 (326)
T ss_dssp -------------EEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEE
T ss_pred -------------cCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEE
Confidence 23789999998765 44567899999986 44 21 112222334456788999999877776
Q ss_pred cCCCeEEEecCCCCCccccCCccccccCCeeEEEEc-CCCCEEEEEc
Q 010206 461 SLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWH-PSENSIACAA 506 (515)
Q Consensus 461 ~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~la~~~ 506 (515)
..++.|..++-.. +...........+.+++|+ |+++.|.+++
T Consensus 248 ~~~~~v~~~d~~g----~~~~~i~~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 248 WGEGAVDRYDTDG----NHIARYEVPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp ETTTEEEEECTTC----CEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred eCCCEEEEECCCC----CEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence 5566666632210 0100111124568999998 9988877654
No 218
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.21 E-value=3e-10 Score=104.32 Aligned_cols=184 Identities=10% Similarity=0.031 Sum_probs=123.2
Q ss_pred ceEEEEEecCCCcEEEEEecCCeEEEEecCccccccc-ccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCC
Q 010206 285 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT-HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYM 363 (515)
Q Consensus 285 ~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~ 363 (515)
+++.+++++.. .++++|+.+ .+.+|++........ ....++ ......+.. |+.++| ++++|+++.++
T Consensus 39 ~~nlLais~~~-gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~-------~~~~~~lp~-V~~l~f--d~~~L~v~~~~ 106 (388)
T 1xip_A 39 SLQNLDISNSK-SLFVAASGS-KAVVGELQLLRDHITSDSTPLT-------FKWEKEIPD-VIFVCF--HGDQVLVSTRN 106 (388)
T ss_dssp CCBCEEEETTT-TEEEEEETT-EEEEEEHHHHHHHHHSSSCCCC-------CSEEEECTT-EEEEEE--ETTEEEEEESS
T ss_pred cccEEEEcCCC-CEEEEeCCC-EEEEEEhhHhhhhhcccccccc-------ceEEeeCCC-eeEEEE--CCCEEEEEcCC
Confidence 68899999998 789988887 556699866431000 000011 001223446 999999 89999999669
Q ss_pred eEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCC
Q 010206 364 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKN 443 (515)
Q Consensus 364 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~ 443 (515)
.|++||+.. .........+... +.++.+.+. .+++++.||.|.+||++++... .+..
T Consensus 107 ~l~v~dv~s-l~~~~~~~~~~~~---------------v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~-----~~~~ 163 (388)
T 1xip_A 107 ALYSLDLEE-LSEFRTVTSFEKP---------------VFQLKNVNN--TLVILNSVNDLSALDLRTKSTK-----QLAQ 163 (388)
T ss_dssp EEEEEESSS-TTCEEEEEECSSC---------------EEEEEECSS--EEEEEETTSEEEEEETTTCCEE-----EEEE
T ss_pred cEEEEEchh-hhccCccceeecc---------------eeeEEecCC--CEEEEECCCCEEEEEccCCccc-----cccC
Confidence 999999986 4444444444322 335555544 3888899999999999976432 2456
Q ss_pred ceeeEEECCCCCeeEeecCCCeEEEe--cCCCCC-ccccCC-----ccccccCCeeEEEEcCCCCEEEEE
Q 010206 444 PMRRQVQTPSRPSRPLGSLSGVVRRV--KGADNS-ALDANG-----NAFDFSMKLLHLAWHPSENSIACA 505 (515)
Q Consensus 444 ~v~~~~~~~~~~~l~s~~~d~~v~l~--~~~~~~-~~~~~~-----~~~~~~~~i~~~~~s~~~~~la~~ 505 (515)
.|++++|+|+| ++.|..||.++++ ++.... +.++.. +..++...|.++.|.+++.++++-
T Consensus 164 ~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 164 NVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp SEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred CceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 89999999999 6788889999982 222210 101110 111367889999999999999863
No 219
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.20 E-value=1.1e-08 Score=96.39 Aligned_cols=260 Identities=9% Similarity=-0.013 Sum_probs=147.1
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccccee
Q 010206 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (515)
Q Consensus 36 ~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (515)
.....|+|+++|+++++...++.|++||..++... ...... ...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~-----------------------~~~~~~-------------~~~ 174 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT-----------------------TVHPGF-------------KGG 174 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE-----------------------EEEETC-------------CBC
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE-----------------------EeeccC-------------CCC
Confidence 46789999999998888878899999998765532 111111 223
Q ss_pred EEEEEeecCCCcEEEeeeCCC--eEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccC
Q 010206 116 NKIRWCQSANSALYLLSTNDK--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (515)
Q Consensus 116 ~~l~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~ 193 (515)
. ++| ++++..|+++..++ .|.+|+..++............ ... .+..++++|++..|
T Consensus 175 ~-ia~--~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~----~~~-------~p~~iav~p~~g~l------- 233 (409)
T 3hrp_A 175 K-PAV--TKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGST----FSG-------KIGAVALDETEEWL------- 233 (409)
T ss_dssp B-CEE--CTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTT----SCS-------CCCBCEECTTSSEE-------
T ss_pred c-eeE--ecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccch----hcC-------CcEEEEEeCCCCeE-------
Confidence 3 888 55677888887765 7888888765432222000000 001 11278888844444
Q ss_pred CCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCe-E-EEEecCC-CCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 194 SNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHI-N-SISNNSD-GETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 194 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v-~-~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
+....++.|..|| ........ .......++...- . .++|+|+ +.++++- .++.|+.|+.... ..
T Consensus 234 -----yv~d~~~~I~~~d--~~~~~~~~---~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~ 301 (409)
T 3hrp_A 234 -----YFVDSNKNFGRFN--VKTQEVTL---IKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CE 301 (409)
T ss_dssp -----EEECTTCEEEEEE--TTTCCEEE---EEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EE
T ss_pred -----EEEECCCcEEEEE--CCCCCEEE---EecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EE
Confidence 3345567888877 32221100 0000011222211 3 8999996 5555554 6889999997633 11
Q ss_pred ceeccc-Ccc------ccccCCceEEEEEecCCCcEEEEEe-cCCeEEEEecCcccccccccceeeecc-CCCcc--ccc
Q 010206 270 NIVDVK-PAN------MEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQE-APGTR--SFF 338 (515)
Q Consensus 270 ~~~~~~-~~~------~~~~~~~i~~i~~~p~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~--~~~ 338 (515)
.+.... ... ....-.....++++|++ +++++-. .++.|+.||+.++.. ..+.... ..... ...
T Consensus 302 ~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG-~lyvad~~~~~~I~~~~~~~G~v-----~~~~g~~~~~g~~~g~~~ 375 (409)
T 3hrp_A 302 WFCGSATQKTVQDGLREEALFAQPNGMTVDEDG-NFYIVDGFKGYCLRKLDILDGYV-----STVAGQVDVASQIDGTPL 375 (409)
T ss_dssp EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC-CEEEEETTTTCEEEEEETTTTEE-----EEEEECTTCBSCCCBSTT
T ss_pred EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC-CEEEEeCCCCCEEEEEECCCCEE-----EEEeCCCCCCCcCCCChh
Confidence 111100 000 00112347899999999 7777777 789999999877653 1222110 00000 000
Q ss_pred cccccceeEEEEccCCCEEEEEcC-CeEEEEEe
Q 010206 339 TEIIASISDIKFARNGRHILSRDY-MTLKLWDI 370 (515)
Q Consensus 339 ~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~ 370 (515)
...-.....++++++|.++++-.. ++|+.+++
T Consensus 376 ~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 376 EATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred ceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 011245789999999877776554 78887765
No 220
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.19 E-value=5.7e-09 Score=97.29 Aligned_cols=282 Identities=9% Similarity=0.021 Sum_probs=167.4
Q ss_pred eecCCCcEEEeeeC-C----CeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCC
Q 010206 121 CQSANSALYLLSTN-D----KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (515)
Q Consensus 121 ~~~~~~~~l~~~~~-d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 195 (515)
.|.+++..++++.. + +.|.++|..+.+..........+ .++++|||+.+
T Consensus 79 ~p~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P-----------------gia~SpDgk~l--------- 132 (426)
T 3c75_H 79 APAPDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP-----------------HPVAAEDGSFF--------- 132 (426)
T ss_dssp CCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC-----------------EEEECTTSSCE---------
T ss_pred cCCCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC-----------------ceEECCCCCEE---------
Confidence 34455566666544 2 69999999999887776654322 68999999988
Q ss_pred CCCCCCC----------CcccEEeeeeeecccccccccceeeeeecc------CcCCeEEEEecCCCCEEEEe--C-CCc
Q 010206 196 DSSFPPG----------GVSSLRLPVVVVTSQETNLVAGCRRIYAHA------HDYHINSISNNSDGETFISA--D-DLR 256 (515)
Q Consensus 196 ~~~~~~~----------~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~s~--~-d~~ 256 (515)
+.+. .++.|.++| ....+. ......+ .......+.++||++++..+ . ++.
T Consensus 133 ---yVan~~~~~~~~G~~~~~VsviD--~~t~~v------v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 133 ---AQASTVFERIARGKRTDYVEVFD--PVTFLP------IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp ---EEEEEEEEETTEEEEEEEEEEEC--TTTCCE------EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ---EEEeccccccccCCCCCEEEEEE--CCCCcE------EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 4443 467888888 333221 1111111 11235578999999999886 3 688
Q ss_pred EEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccc
Q 010206 257 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRS 336 (515)
Q Consensus 257 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 336 (515)
|.+.|+.+.+....+ ... + +....|++.+.+++.+.||.+.+.+..+++........+....
T Consensus 202 VsVID~~t~kvv~~I------~v~---g---~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~------ 263 (426)
T 3c75_H 202 VGVVDLEGKTFDRML------DVP---D---CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTED------ 263 (426)
T ss_dssp EEEEETTTTEEEEEE------ECC---S---EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTT------
T ss_pred EEEEECCCCeEEEEE------EcC---C---ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCC------
Confidence 999999977654322 111 1 1334455446667777788888888755443211000111110
Q ss_pred cccccccc-eeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCC--eeeEeeeccccccccccccCCCccceeeEEEcCCCC
Q 010206 337 FFTEIIAS-ISDIKFARNGRHILSRDY-MTLKLWDINMDSGP--VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 412 (515)
Q Consensus 337 ~~~~~~~~-i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 412 (515)
.+ ...+.+++++..++..+. +.+.+.|+.. ... +..+...... .+. . .........++++|+++
T Consensus 264 ------~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~-~~~~v~~~~~~~~~~--~i~-~--g~~p~g~~~va~s~dg~ 331 (426)
T 3c75_H 264 ------ELLINHPAFSLRSGRLVWPTYTGKIFQADLTA-EGATFRAPIEALTEA--ERA-D--DWRPGGWQQTAYHRQSD 331 (426)
T ss_dssp ------SCBCSCCEECTTTCEEEEEBTTSEEEEEEECS-SCEEECCCEESSCTT--TGG-G--TEEECSSSCEEEEGGGT
T ss_pred ------CceeeEeeecCCCCEEEEEeCCCcEEEEeccC-CceEEeeeeeecccc--ccc-c--ccccCCceeeEEcCCCC
Confidence 11 123567888887766555 8999999864 221 1111100000 000 0 00000011478999998
Q ss_pred EEEEecC----------CCcEEEEecCCCCcceeeeccCCCceeeEEECCCCC-eeEeec-CCCeEEEecC
Q 010206 413 RVATGSY----------SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP-SRPLGS-LSGVVRRVKG 471 (515)
Q Consensus 413 ~l~s~s~----------dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~-~d~~v~l~~~ 471 (515)
.++.... ++.|.+.|+.+.+ .+.++.... ....++++|+++ .+++.. .++.|.+++.
T Consensus 332 rlyVa~~~~~~gthk~~s~~VsVID~~T~k-vv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~ 400 (426)
T 3c75_H 332 RIYLLVDQRDEWKHKAASRFVVVLNAETGE-RINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDA 400 (426)
T ss_dssp EEEEEEEECCTTCTTSCEEEEEEEETTTCC-EEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred EEEEEecccccccccCCCCEEEEEECCCCe-EEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEEC
Confidence 7776532 4579999999874 445554322 467999999999 777777 4899998543
No 221
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.10 E-value=3.1e-08 Score=90.82 Aligned_cols=258 Identities=9% Similarity=0.021 Sum_probs=142.4
Q ss_pred EEEEeecCCCcEEEeee----------CCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcc
Q 010206 117 KIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (515)
Q Consensus 117 ~l~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l 186 (515)
.+.+ ++++++++++. .++.|.+||+.+++............... + ..+-.++++|||+.+
T Consensus 69 ~i~~--spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~--g------~~P~~ia~SpDGk~l 138 (368)
T 1mda_H 69 LAVA--GHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV--G------PRVHIIGNCASSACL 138 (368)
T ss_dssp EEEE--CTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB--S------CCTTSEEECTTSSCE
T ss_pred ceEE--CCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccccc--C------CCcceEEEcCCCCEE
Confidence 6888 56777888875 37899999999998877665431000000 0 001178999999998
Q ss_pred ccccccCCCCCCCCCCC--cccEEe--eeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEE-EEe-CCCcEEEE
Q 010206 187 ERNFGCASNDSSFPPGG--VSSLRL--PVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF-ISA-DDLRINLW 260 (515)
Q Consensus 187 ~~~~~~~~~~~~~~~~~--~~~i~i--~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~-~d~~i~iw 260 (515)
+.+.. ...+.+ +| ... ......+. ++.+.|+++.. ++. .|+.+.+.
T Consensus 139 ------------yVan~~~~~~v~V~~iD--~~t---------v~~i~v~~-----~~~~~p~g~~~~~~~~~dg~~~~v 190 (368)
T 1mda_H 139 ------------LFFLFGSSAAAGLSVPG--ASD---------DQLTKSAS-----CFHIHPGAAATHYLGSCPASLAAS 190 (368)
T ss_dssp ------------EEEECSSSCEEEEEETT--TEE---------EEEEECSS-----CCCCEEEETTEEECCCCTTSCEEE
T ss_pred ------------EEEccCCCCeEEEEEEc--hhh---------ceEEECCC-----ceEEccCCCeEEEEEcCCCCEEEE
Confidence 55442 456777 77 222 11110111 11233444333 332 68888888
Q ss_pred eCCC----CCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccc
Q 010206 261 NLEI----SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRS 336 (515)
Q Consensus 261 d~~~----~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 336 (515)
|+.+ ........ . ..+.-...+. . .+++ ..++..+. +.+.+.|+...... ....+...... ..
T Consensus 191 d~~~~~~~~~~v~~~~--t-~~i~vg~~P~---~-~~~~-~~~~~vs~-~~V~viD~~~~~~~--v~~~~~~~~~~--~~ 257 (368)
T 1mda_H 191 DLAAAPAAAGIVGAQC--T-GAQNCSSQAA---Q-ANYP-GMLVWAVA-SSILQGDIPAAGAT--MKAAIDGNESG--RK 257 (368)
T ss_dssp ECCSSCCCCEECCCCS--C-TTSCBCSCCE---E-ETTT-TEEEECBS-SCCEEEECCSSCCE--EECCCCSSCTH--HH
T ss_pred ECccccccCCeEEEEe--e-eeeeCCCCcc---c-cccC-CEEEEEcC-CEEEEEECCCCcce--EEEEEEecccc--cc
Confidence 8875 22111000 0 0111122333 3 6666 45555555 89999998653210 00111100000 00
Q ss_pred cccccccceeEEEEccCCCEEEEE-c---------CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEE
Q 010206 337 FFTEIIASISDIKFARNGRHILSR-D---------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC 406 (515)
Q Consensus 337 ~~~~~~~~i~~~~~s~~~~~l~s~-~---------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 406 (515)
...........++++|+++.++.+ . .+.+.++|+.+ .+.+.++...... ..++
T Consensus 258 ~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t-~~vv~~i~vg~~p----------------~gi~ 320 (368)
T 1mda_H 258 ADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISNGHDS----------------DAII 320 (368)
T ss_dssp HTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEEEEEE----------------CEEE
T ss_pred ccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCC-CeEEEEEECCCCc----------------ceEE
Confidence 000011122336899999888764 2 22566999997 7777777655432 3899
Q ss_pred EcCCCC-EEEEec-CCCcEEEEecCCCCcceeeeccCCC
Q 010206 407 LSGDGG-RVATGS-YSNLFRVFGCSEGSAESTTLEASKN 443 (515)
Q Consensus 407 ~s~~~~-~l~s~s-~dg~i~iw~~~~~~~~~~~~~~~~~ 443 (515)
|+|||+ .+++.. .++.|.++|+.++ +.+.+++....
T Consensus 321 ~s~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I~vg~~ 358 (368)
T 1mda_H 321 AAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVELDKG 358 (368)
T ss_dssp ECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECCCCSC
T ss_pred ECCCCCEEEEEccCCCCeEEEEECCCC-cEEEEEECCCC
Confidence 999998 455666 5999999999987 44455554443
No 222
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.09 E-value=5.3e-09 Score=106.03 Aligned_cols=237 Identities=11% Similarity=0.102 Sum_probs=141.9
Q ss_pred cCcCCeEEEEecCCCCEEEEe-C-----CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC
Q 010206 232 AHDYHINSISNNSDGETFISA-D-----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK 305 (515)
Q Consensus 232 ~~~~~v~~~~~~~~~~~l~s~-~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d 305 (515)
+|...+..++|||||++|+.+ + ...|++||+.+++.... .+.. .....++|+ |+ +.|+.++.+
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-------~~~~--~k~~~~~Ws-Dg-~~l~y~~~~ 194 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-------PLKD--VKFSGISWL-GN-EGFFYSSYD 194 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-------EEEE--EESCCCEEE-TT-TEEEEEESS
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-------ccCC--ceeccEEEe-CC-CEEEEEEec
Confidence 355678889999999999854 2 25799999998764321 1111 112467899 98 777777776
Q ss_pred C-------------eEEEEecCcccccccccceeeeccCCCccccccc-cccceeEEEEccCCCEEEEE-c---C-CeEE
Q 010206 306 G-------------SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE-IIASISDIKFARNGRHILSR-D---Y-MTLK 366 (515)
Q Consensus 306 g-------------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~s~-~---~-~~i~ 366 (515)
. .|++|++.+...... ..++. .. |...+..+.|+|||++|+.. . . +.|+
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~--~v~~~----------~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~ 262 (693)
T 3iuj_A 195 KPDGSELSARTDQHKVYFHRLGTAQEDDR--LVFGA----------IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLY 262 (693)
T ss_dssp CCC-------CCCCEEEEEETTSCGGGCE--EEESC----------SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEE
T ss_pred CcccccccccCCCcEEEEEECCCCcccce--EEEec----------CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEE
Confidence 3 488999877543111 11111 11 22346789999999988652 1 2 5899
Q ss_pred EEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEE-EecC---CCcEEEEecCCCCcc-eeeeccC
Q 010206 367 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA-TGSY---SNLFRVFGCSEGSAE-STTLEAS 441 (515)
Q Consensus 367 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~s~---dg~i~iw~~~~~~~~-~~~~~~~ 441 (515)
++|+..+......+..+.... ... ++++|..|+ .... .+.|..+++.++... ...+..|
T Consensus 263 ~~d~~~~~~~~~~l~~~~~~~---------------~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~ 326 (693)
T 3iuj_A 263 VKDLSQENAPLLTVQGDLDAD---------------VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE 326 (693)
T ss_dssp EEETTSTTCCCEEEECSSSSC---------------EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC
T ss_pred EEECCCCCCceEEEeCCCCce---------------EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC
Confidence 999976333455555443221 123 666766555 4333 368999999876431 2345555
Q ss_pred CCceeeEEECCCCCeeEeecC-CCe--EEEe--cCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcC-----CcEE
Q 010206 442 KNPMRRQVQTPSRPSRPLGSL-SGV--VRRV--KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS-----NSLY 511 (515)
Q Consensus 442 ~~~v~~~~~~~~~~~l~s~~~-d~~--v~l~--~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~-----~~~~ 511 (515)
...+. .+++++..|+.... ++. ++++ ++.... .+ .......+..++++|+++.|+.... ..++
T Consensus 327 ~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~--~l---~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~ 399 (693)
T 3iuj_A 327 RQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVR--EV---ALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLY 399 (693)
T ss_dssp CSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEE--EE---CCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEE
T ss_pred CCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeE--Ee---ecCCCceEEeeecCCCCCEEEEEecCCCCCCEEE
Confidence 55544 88888888766654 443 4442 222111 11 1122356778888999888775432 3455
Q ss_pred EEe
Q 010206 512 MYY 514 (515)
Q Consensus 512 i~~ 514 (515)
.|+
T Consensus 400 ~~d 402 (693)
T 3iuj_A 400 RFE 402 (693)
T ss_dssp EEC
T ss_pred EEE
Confidence 553
No 223
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.06 E-value=1.7e-07 Score=86.38 Aligned_cols=169 Identities=15% Similarity=0.171 Sum_probs=90.6
Q ss_pred EEEecCCCCEEEEeC--------------------CCcEEEEeCCCCCcccceecccCccccccCCceEEEEE--ecCCC
Q 010206 239 SISNNSDGETFISAD--------------------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF--HPTHC 296 (515)
Q Consensus 239 ~~~~~~~~~~l~s~~--------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~--~p~~~ 296 (515)
.+.|+|+++.+++++ +.+|.+||+.+.+. ...+. +.........+.| +|++
T Consensus 192 d~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~-~~tI~-----vg~~g~~P~~i~f~~~Pdg- 264 (462)
T 2ece_A 192 DFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR-IHSLT-----LGEENRMALELRPLHDPTK- 264 (462)
T ss_dssp CEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE-EEEEE-----SCTTEEEEEEEEECSSTTC-
T ss_pred eEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE-eeEEe-----cCCCCCccceeEeeECCCC-
Confidence 466677777777763 78999999987532 22221 1111223456666 9998
Q ss_pred cEEEEEe------cCCeEEEEecCcccccccccceeeeccC--CCcc----ccccccccceeEEEEccCCCEEEEEcC--
Q 010206 297 NMLAYSS------SKGSIRLIDMRQSALCDTHSKLFEEQEA--PGTR----SFFTEIIASISDIKFARNGRHILSRDY-- 362 (515)
Q Consensus 297 ~~l~~~~------~dg~i~~wd~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~i~~~~~s~~~~~l~s~~~-- 362 (515)
+++++++ .+++|.+|....+... ..+.++.... .... .-+.+-......+.+|+||++|+++..
T Consensus 265 ~~aYV~~e~~~~~Lss~V~v~~~d~g~~~--~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~ 342 (462)
T 2ece_A 265 LMGFINMVVSLKDLSSSIWLWFYEDGKWN--AEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGI 342 (462)
T ss_dssp CEEEEEEEEETTTCCEEEEEEEEETTEEE--EEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTT
T ss_pred CEEEEEEeeeccCCCceEEEEEecCCcee--EEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCC
Confidence 5555555 5678888776554321 1122211110 0000 000111235788999999999998764
Q ss_pred CeEEEEEeeCCCC--CeeeEeeeccccccccccccCCCc-cceeeEEEcCCCCEEEEec
Q 010206 363 MTLKLWDINMDSG--PVATFQVHEHLRPKLCDLYENDSI-FDKFECCLSGDGGRVATGS 418 (515)
Q Consensus 363 ~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~s 418 (515)
+.|.+||+....+ .+..+...... .+.... ....+ ..-..++++|||++|+++.
T Consensus 343 d~VavfdV~d~~~~~lv~~I~tGG~~-~~~~~~-~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 343 GEVRQYDISNPFKPVLTGKVKLGGIF-HRADHP-AGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TEEEEEECSSTTSCEEEEEEECBTTT-TCBCCT-TSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CEEEEEEecCCCCcEEEEEEEeCCee-cccccc-ccccCCCCCCEEEEcCCCCEEEEEc
Confidence 8999999964332 22222221100 000000 00000 0012789999999998877
No 224
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.03 E-value=6.7e-08 Score=88.91 Aligned_cols=254 Identities=7% Similarity=-0.052 Sum_probs=145.7
Q ss_pred CCeEEEEecCCCCEEEEe---CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEec-----CC
Q 010206 235 YHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-----KG 306 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~-----dg 306 (515)
..+..++++++++.+++. .++.++||.+.+++ ........ .....+...+.++++++++ +++++-.. ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~-~~~~~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQS-GNAIITFDTVLGIKSDGNG-IVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCC-SSCCCCCSCEEEEEECSSS-EEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcc-cCcccceeEeeEEEEcCCC-cEEEEcCCCCcCCCC
Confidence 678899999999999985 24535566554222 11100000 0122355679999999998 66665544 57
Q ss_pred eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEE-EEEc---C-CeEEEEEeeCCCCCeeeEe
Q 010206 307 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI-LSRD---Y-MTLKLWDINMDSGPVATFQ 381 (515)
Q Consensus 307 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~s~~---~-~~i~iwd~~~~~~~~~~~~ 381 (515)
.|.+||+.+++.. +.+..+... ..+...+..+++++++..+ ++.. . +.|.+||+.+ ++....+.
T Consensus 94 ~i~~~d~~tg~~~----~~~~~~~~~------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~-g~~~r~~~ 162 (343)
T 2qe8_A 94 KLVAWDTLNNQLS----RVIYLPPPI------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQT-GLAARVLQ 162 (343)
T ss_dssp EEEEEETTTTEEE----EEEECCTTT------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTT-CCEEEECT
T ss_pred eEEEEECCCCeEE----EEEECChhh------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCC-CCEEEEec
Confidence 8999999887643 222221100 1122356889999865444 4433 4 8999999975 55444443
Q ss_pred eecccccccc-------ccc---cCCC----ccceeeEEEcCCCCEEEEecCCC-cEEEEecC---CCC----ccee--e
Q 010206 382 VHEHLRPKLC-------DLY---ENDS----IFDKFECCLSGDGGRVATGSYSN-LFRVFGCS---EGS----AEST--T 437 (515)
Q Consensus 382 ~~~~~~~~~~-------~~~---~~~~----~~~v~~~~~s~~~~~l~s~s~dg-~i~iw~~~---~~~----~~~~--~ 437 (515)
.|......-. .++ .... ...+..++|+|||+.|+.+..++ .++.++.. .+. .... .
T Consensus 163 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 242 (343)
T 2qe8_A 163 GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIE 242 (343)
T ss_dssp TCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCE
T ss_pred CCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceE
Confidence 3211110000 000 0000 01246899999999888777655 55444432 110 0000 1
Q ss_pred eccCCCceeeEEECCCCCeeEeecCCCeEEEecC--CCCCccccCCccccccCCeeEEEEcCCCCEEEEEc
Q 010206 438 LEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKG--ADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 506 (515)
Q Consensus 438 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~--~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~ 506 (515)
..++......++++++|.++++...++.|.+++- .+.. .... .........++|+++++++++.+
T Consensus 243 ~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~---~~~~-~~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 243 RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYK---LLVT-DEKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEE---EEEE-CGGGSCEEEEEECTTSCEEEEEC
T ss_pred ecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEE---EEEE-CCceecCCeeEECCCCcEEEEeC
Confidence 1233445668999999999999888888888432 1111 0100 01234678999999998877765
No 225
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.99 E-value=2.8e-07 Score=84.93 Aligned_cols=233 Identities=11% Similarity=0.076 Sum_probs=138.9
Q ss_pred CCCCEEEEe--CCCcEEEEeCCCCCcccceecc-cCcccc-c-cCCceEEEEEecCCCcEEEEEecC------CeEEEEe
Q 010206 244 SDGETFISA--DDLRINLWNLEISNQSFNIVDV-KPANME-D-LTEVITSAEFHPTHCNMLAYSSSK------GSIRLID 312 (515)
Q Consensus 244 ~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~-~~~~~~-~-~~~~i~~i~~~p~~~~~l~~~~~d------g~i~~wd 312 (515)
+++++|+.. .++.|.++|+.+.....++... .|..+. . .......+...|++ +++++..+ +.|.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEE
Confidence 778888774 7999999999754322222211 011111 1 12245778889998 55665555 7899999
Q ss_pred cCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc--------------------CCeEEEEEeeC
Q 010206 313 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--------------------YMTLKLWDINM 372 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--------------------~~~i~iwd~~~ 372 (515)
..+.+... .++....+ ..--..+-|+|+++.+++.+ ..+|.+||+.+
T Consensus 171 ~~T~~v~~----~~~~~~~~---------~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~ 237 (462)
T 2ece_A 171 HYSFEPLG----KWEIDRGD---------QYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK 237 (462)
T ss_dssp TTTCCEEE----ECCSBCTT---------CCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT
T ss_pred CCCCeEEE----EEccCCCC---------ccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC
Confidence 99887643 23211110 01234688899999999874 38999999986
Q ss_pred CCCCeeeEeeecc-ccccccccccCCCccceeeEE--EcCCCCEEEEec------CCCcEEEEecCCCCcce-eee--cc
Q 010206 373 DSGPVATFQVHEH-LRPKLCDLYENDSIFDKFECC--LSGDGGRVATGS------YSNLFRVFGCSEGSAES-TTL--EA 440 (515)
Q Consensus 373 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~--~s~~~~~l~s~s------~dg~i~iw~~~~~~~~~-~~~--~~ 440 (515)
++.++++..... .. ...+. |+|++++++.++ .+++|.+|....+.... +.+ ..
T Consensus 238 -~k~~~tI~vg~~g~~--------------P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~ 302 (462)
T 2ece_A 238 -RKRIHSLTLGEENRM--------------ALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPA 302 (462)
T ss_dssp -TEEEEEEESCTTEEE--------------EEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECC
T ss_pred -CcEeeEEecCCCCCc--------------cceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCC
Confidence 666666654311 10 01344 499999987766 46688776655431111 110 10
Q ss_pred ----------------CCCceeeEEECCCCCeeEeecC-CCeEEEecCCCCCccccCCcc-cc-------c------cCC
Q 010206 441 ----------------SKNPMRRQVQTPSRPSRPLGSL-SGVVRRVKGADNSALDANGNA-FD-------F------SMK 489 (515)
Q Consensus 441 ----------------~~~~v~~~~~~~~~~~l~s~~~-d~~v~l~~~~~~~~~~~~~~~-~~-------~------~~~ 489 (515)
-......+.+++|+++|..+.. .+.|.+++-......++.... .+ + ...
T Consensus 303 ~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~gg 382 (462)
T 2ece_A 303 EPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGA 382 (462)
T ss_dssp EECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSC
T ss_pred ccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCC
Confidence 0234678999999998866655 678887432211111111110 00 0 113
Q ss_pred eeEEEEcCCCCEEEEEc
Q 010206 490 LLHLAWHPSENSIACAA 506 (515)
Q Consensus 490 i~~~~~s~~~~~la~~~ 506 (515)
-..++++|||++|.++.
T Consensus 383 Pr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 383 PQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCEEECTTSSEEEEEC
T ss_pred CCEEEEcCCCCEEEEEc
Confidence 58899999999999887
No 226
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.99 E-value=3e-07 Score=92.34 Aligned_cols=195 Identities=9% Similarity=0.062 Sum_probs=114.1
Q ss_pred EEEEecCCCCEEEEe-CCC-------------------cEEEEeCCCCCcccceecccCcccccc-------CCceEEEE
Q 010206 238 NSISNNSDGETFISA-DDL-------------------RINLWNLEISNQSFNIVDVKPANMEDL-------TEVITSAE 290 (515)
Q Consensus 238 ~~~~~~~~~~~l~s~-~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~-------~~~i~~i~ 290 (515)
..++++|++..++.+ .++ .|..+|.++++...... ...| .....-+.
T Consensus 246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~------~~~~d~wd~~~~~~p~l~~ 319 (677)
T 1kb0_A 246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQ------ETPGDNWDYTSTQPMILAD 319 (677)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE------SSTTCCSCCCCCSCCEEEE
T ss_pred cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEe------cCCCcccccccCCCcEEEe
Confidence 357788888888876 443 59999999887654321 1111 11222333
Q ss_pred EecCCC--cEEEEEecCCeEEEEecCcccccccccce-------eeeccCCC----------ccccc---cccccceeEE
Q 010206 291 FHPTHC--NMLAYSSSKGSIRLIDMRQSALCDTHSKL-------FEEQEAPG----------TRSFF---TEIIASISDI 348 (515)
Q Consensus 291 ~~p~~~--~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-------~~~~~~~~----------~~~~~---~~~~~~i~~~ 348 (515)
...+|. ..++.++.+|.+.++|.++++.+...... ++....+. ....+ .+. ..-..+
T Consensus 320 ~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~-~~w~~~ 398 (677)
T 1kb0_A 320 IKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGA-HNWHPM 398 (677)
T ss_dssp EEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCS-SCSSCC
T ss_pred cccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccc-cCCCCc
Confidence 444552 47888999999999999999875331100 00000000 00000 000 011357
Q ss_pred EEccCCCEEEEEc-------------------------------------------C-CeEEEEEeeCCCCCeeeEeeec
Q 010206 349 KFARNGRHILSRD-------------------------------------------Y-MTLKLWDINMDSGPVATFQVHE 384 (515)
Q Consensus 349 ~~s~~~~~l~s~~-------------------------------------------~-~~i~iwd~~~~~~~~~~~~~~~ 384 (515)
+++|++.++++.. . +.|..||+.+ ++.+-.+....
T Consensus 399 a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~~ 477 (677)
T 1kb0_A 399 SFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA-QKAAWSVEHVS 477 (677)
T ss_dssp EEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT-TEEEEEEEESS
T ss_pred eEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC-CcEEeecCCCC
Confidence 8899887777631 1 6788888876 66554443221
Q ss_pred cccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeecc-CCCceeeEEECCCCCee
Q 010206 385 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA-SKNPMRRQVQTPSRPSR 457 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l 457 (515)
. ++...+..++.+++.++.||.+++||.++++ ++..+.. +...-..+.+.++|+.+
T Consensus 478 ~----------------~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~-~lw~~~~~~~~~~~p~~y~~~G~~~ 534 (677)
T 1kb0_A 478 P----------------WNGGTLTTAGNVVFQGTADGRLVAYHAATGE-KLWEAPTGTGVVAAPSTYMVDGRQY 534 (677)
T ss_dssp S----------------CCCCEEEETTTEEEEECTTSEEEEEETTTCC-EEEEEECSSCCCSCCEEEEETTEEE
T ss_pred C----------------CcCcceEeCCCEEEEECCCCcEEEEECCCCc-eeeeeeCCCCcccCCEEEEeCCEEE
Confidence 1 1244566788889999999999999999984 4445543 33333455666777644
No 227
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.97 E-value=3.2e-07 Score=92.37 Aligned_cols=199 Identities=12% Similarity=0.068 Sum_probs=113.1
Q ss_pred EEEecCCCCEEEEe-CCC-------------------cEEEEeCCCCCcccceecccCccccc--cCCceEEEEEecCCC
Q 010206 239 SISNNSDGETFISA-DDL-------------------RINLWNLEISNQSFNIVDVKPANMED--LTEVITSAEFHPTHC 296 (515)
Q Consensus 239 ~~~~~~~~~~l~s~-~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~i~~i~~~p~~~ 296 (515)
.++++|+..+++.+ .++ .|..+|.++++....... .+...-. ...++.......+|
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~-~~~d~wd~~~~~~~~l~d~~~~G- 316 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQT-TPGDAWDYTATQHMILAELPIDG- 316 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEES-STTCCSCCCCCSCEEEEEEEETT-
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeec-CCcccccccCCCCcEEEeeccCC-
Confidence 57788888888887 555 399999998876543210 0000000 11222222333355
Q ss_pred c---EEEEEecCCeEEEEecCcccccccccc---eeeecc----------------CCCcc--cccccc--ccceeEEEE
Q 010206 297 N---MLAYSSSKGSIRLIDMRQSALCDTHSK---LFEEQE----------------APGTR--SFFTEI--IASISDIKF 350 (515)
Q Consensus 297 ~---~l~~~~~dg~i~~wd~~~~~~~~~~~~---~~~~~~----------------~~~~~--~~~~~~--~~~i~~~~~ 350 (515)
. .++.++.+|.++++|.++++.+..... .+.... .+... ....+. ...-..+++
T Consensus 317 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~ 396 (689)
T 1yiq_A 317 KPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSY 396 (689)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEE
T ss_pred cEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceE
Confidence 4 788899999999999999987532100 000000 00000 000000 001233788
Q ss_pred ccCCCEEEEEc----------------------------------------------CCeEEEEEeeCCCCCeeeEeeec
Q 010206 351 ARNGRHILSRD----------------------------------------------YMTLKLWDINMDSGPVATFQVHE 384 (515)
Q Consensus 351 s~~~~~l~s~~----------------------------------------------~~~i~iwd~~~~~~~~~~~~~~~ 384 (515)
+|+..++++.. +|.|..||+.+ ++.+-.+..+.
T Consensus 397 dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~~ 475 (689)
T 1yiq_A 397 NPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK-QQAAWEVPYVT 475 (689)
T ss_dssp ETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT-TEEEEEEEESS
T ss_pred CCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC-CCeEeEccCCC
Confidence 88877777531 25688888876 66555544332
Q ss_pred cccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccC-CCceeeEEECCCCCee
Q 010206 385 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS-KNPMRRQVQTPSRPSR 457 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l 457 (515)
.. ....+...+.+++.|+.||.|+.||.++++ ++..++.. ......+.+..+|+.+
T Consensus 476 ~~----------------~~g~~~tagglvf~gt~dg~l~a~D~~tG~-~lw~~~~~~~~~~~p~ty~~~G~qy 532 (689)
T 1yiq_A 476 IF----------------NGGTLSTAGNLVFEGSADGRVIAYAADTGE-KLWEQPAASGVMAAPVTYSVDGEQY 532 (689)
T ss_dssp SC----------------CCCEEEETTTEEEEECTTSEEEEEETTTCC-EEEEEECSSCCCSCCEEEEETTEEE
T ss_pred Cc----------------cCccceECCCEEEEECCCCcEEEEECCCCc-cceeeeCCCCcccCceEEEECCEEE
Confidence 11 133566678899999999999999999985 44455433 2223456666777643
No 228
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.93 E-value=2.5e-05 Score=80.61 Aligned_cols=385 Identities=11% Similarity=0.037 Sum_probs=204.2
Q ss_pred eEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEE
Q 010206 38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117 (515)
Q Consensus 38 v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~ 117 (515)
|.++...++|.+.+ |+.++-|..|+..+++.. ... ...+. ..|.+
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~---------------------~~~-~~~~~------------~~i~~ 219 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFE---------------------KVI-PILGT------------KQIQA 219 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEE---------------------ECC-----C------------CCEEE
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEE---------------------Eec-CCCCC------------CeeEE
Confidence 88898888887655 555444888887655421 000 00011 45777
Q ss_pred EEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCC
Q 010206 118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS 197 (515)
Q Consensus 118 l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 197 (515)
+.. ..++ .+..++.++-|.+||..+++..........+ .......|. ++...++|..
T Consensus 220 i~~--d~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~-~~l~~~~i~-------~i~~d~~g~l------------ 276 (795)
T 4a2l_A 220 ILQ--QSPT-RIWVATEGAGLFLINPKTKEIKNYLHSPSNP-KSISSNYIR-------SLAMDSQNRL------------ 276 (795)
T ss_dssp EEE--EETT-EEEEEEBSSCEEEEETTTTEEEEECCCTTCT-TSCSCSBEE-------EEEECTTSCE------------
T ss_pred EEE--cCCC-CEEEEECCCCeEEEeCCCCeEEEeecCCCCc-cccCCCeEE-------EEEEcCCCCE------------
Confidence 776 3444 4555665545889998887655442211000 011112222 4444555554
Q ss_pred CCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCc
Q 010206 198 SFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPA 277 (515)
Q Consensus 198 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~ 277 (515)
..++.. .+.+++ ..................-....|.++...++|.+.+...++-|..|+..+... ......+.
T Consensus 277 -Wigt~~-Gl~~~~--~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~--~~~~~~~~ 350 (795)
T 4a2l_A 277 -WIGTFN-DLNIYH--EGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRF--KNIRNIPY 350 (795)
T ss_dssp -EEEESS-CEEEEE--TTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSS--EEECCCTT
T ss_pred -EEEeCC-hhheEc--CCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccc--eEEcCCCC
Confidence 344444 566666 211110000000000001123579999999999877766667788888764331 11100000
Q ss_pred cccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeecc-CCCccccccccccceeEEEEccCCCE
Q 010206 278 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE-APGTRSFFTEIIASISDIKFARNGRH 356 (515)
Q Consensus 278 ~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~ 356 (515)
.-.-....|.++...+++ . |-.|+.++-|..||..++... .+.... .+. ..-....|.++...++|+.
T Consensus 351 ~~~l~~~~V~~i~~d~~g-~-lWiGt~~~Gl~~~~~~~~~~~-----~~~~~~~~~~----~~l~~~~v~~i~~d~~g~~ 419 (795)
T 4a2l_A 351 KNSLSDNVVSCIVEDKDK-N-LWIGTNDGGLNLYNPITQRFT-----SYTLQEDESA----RGIGSNNIKAVYVDEKKSL 419 (795)
T ss_dssp SSSCSCSSEEEEEECTTS-C-EEEEESSSCEEEECTTTCCEE-----EECCC----------CCSCSCEEEEEEETTTTE
T ss_pred CCCCCCCeeEEEEECCCC-C-EEEEECCCCeEEEcCCCCcEE-----EEecCCCCcc----cCCCCccEEEEEEcCCCCE
Confidence 001124569999998887 4 455788878999998765421 111000 000 0001246899999889984
Q ss_pred EEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcce
Q 010206 357 ILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES 435 (515)
Q Consensus 357 l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~ 435 (515)
|..|+. +.|..||..+ ++ ...+..... .+ .-..|.++...++|++.+.. . +.|.+|+..++....
T Consensus 420 lWigt~~~Gl~~~d~~~-~~-~~~~~~~~~---~l-------~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~ 485 (795)
T 4a2l_A 420 VYIGTHAGGLSILHRNS-GQ-VENFNQRNS---QL-------VNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTT 485 (795)
T ss_dssp EEEEETTTEEEEEETTT-CC-EEEECTTTS---CC-------SCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEE
T ss_pred EEEEeCcCceeEEeCCC-Cc-EEEeecCCC---Cc-------CCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEE
Confidence 444544 7799999874 32 333321100 00 00125688888888866544 3 458889987653221
Q ss_pred eee-----ccCCCceeeEEECCCCCeeEeecCCCeEEE-ecCCCCCccccC-CccccccCCeeEEEEcCCCCEEEEEcCC
Q 010206 436 TTL-----EASKNPMRRQVQTPSRPSRPLGSLSGVVRR-VKGADNSALDAN-GNAFDFSMKLLHLAWHPSENSIACAASN 508 (515)
Q Consensus 436 ~~~-----~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l-~~~~~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~la~~~~~ 508 (515)
... ......+.++...+++...+... .|..++ .+.... ..... .........|.++...++|++.+... +
T Consensus 486 ~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~ 562 (795)
T 4a2l_A 486 IEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E 562 (795)
T ss_dssp CCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S
T ss_pred ccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C
Confidence 111 11235688888888887665554 666555 222211 00000 01111346789999999998655444 4
Q ss_pred cEEEEe
Q 010206 509 SLYMYY 514 (515)
Q Consensus 509 ~~~i~~ 514 (515)
|++.|+
T Consensus 563 Gl~~~d 568 (795)
T 4a2l_A 563 GFYCFN 568 (795)
T ss_dssp CEEEEE
T ss_pred CceeEC
Confidence 888875
No 229
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.92 E-value=2.8e-05 Score=80.23 Aligned_cols=390 Identities=9% Similarity=0.035 Sum_probs=208.8
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccce
Q 010206 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (515)
Q Consensus 35 ~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (515)
...|.++...++|.+.+....+| |.+|+..+++.. .... ....+ ..+ ....
T Consensus 214 ~~~i~~i~~d~~g~lwigt~~~G-l~~~~~~~~~~~---------------------~~~~-~~~~~-----~~l-~~~~ 264 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWVATEGAG-LFLINPKTKEIK---------------------NYLH-SPSNP-----KSI-SSNY 264 (795)
T ss_dssp CCCEEEEEEEETTEEEEEEBSSC-EEEEETTTTEEE---------------------EECC-CTTCT-----TSC-SCSB
T ss_pred CCeeEEEEEcCCCCEEEEECCCC-eEEEeCCCCeEE---------------------Eeec-CCCCc-----ccc-CCCe
Confidence 45788888888887655433344 888887654421 0000 00000 000 0145
Q ss_pred eEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCC
Q 010206 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (515)
Q Consensus 115 v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~ 194 (515)
|.++.. ..++. |..|+.+ -|.+|+..+++........... ..+....|. ++...++|..
T Consensus 265 i~~i~~--d~~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~-~~l~~~~i~-------~i~~D~~g~l--------- 323 (795)
T 4a2l_A 265 IRSLAM--DSQNR-LWIGTFN-DLNIYHEGTDSFASYSSNPVEN-GSLSQRSVR-------SIFMDSQGGM--------- 323 (795)
T ss_dssp EEEEEE--CTTSC-EEEEESS-CEEEEETTTTEEEEECCCTTST-TSCSSSCEE-------EEEECTTSCE---------
T ss_pred EEEEEE--cCCCC-EEEEeCC-hhheEcCCCCeEEEEecCCCCC-CCCCCCcEE-------EEEEeCCcCE---------
Confidence 888887 55554 5555555 5889998887765443221111 111122232 4445555553
Q ss_pred CCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecc
Q 010206 195 NDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDV 274 (515)
Q Consensus 195 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~ 274 (515)
..|+.++.|..++ .....-.... .......-....|.++...+++.+.+...++-|..||..+..... ...
T Consensus 324 ----Wigt~~~Gl~~~~--~~~~~~~~~~-~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~--~~~ 394 (795)
T 4a2l_A 324 ----WLGTYFGGLNYYH--PIRNRFKNIR-NIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTS--YTL 394 (795)
T ss_dssp ----EEEESSSCEEEEC--GGGGSSEEEC-CCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEE--ECC
T ss_pred ----EEEECCCCeEEeC--CCcccceEEc-CCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEE--Eec
Confidence 5566666777665 2111100000 000000012456999999999987776677678899987543211 100
Q ss_pred cCccc--cccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEcc
Q 010206 275 KPANM--EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 352 (515)
Q Consensus 275 ~~~~~--~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 352 (515)
.+... .-....|.++...+++ ++|..|+.++.+..||..+++.. .+.... + ......|.++...+
T Consensus 395 ~~~~~~~~l~~~~v~~i~~d~~g-~~lWigt~~~Gl~~~d~~~~~~~-----~~~~~~-~------~l~~~~v~~i~~d~ 461 (795)
T 4a2l_A 395 QEDESARGIGSNNIKAVYVDEKK-SLVYIGTHAGGLSILHRNSGQVE-----NFNQRN-S------QLVNENVYAILPDG 461 (795)
T ss_dssp C------CCSCSCEEEEEEETTT-TEEEEEETTTEEEEEETTTCCEE-----EECTTT-S------CCSCSCEEEEEECS
T ss_pred CCCCcccCCCCccEEEEEEcCCC-CEEEEEeCcCceeEEeCCCCcEE-----EeecCC-C------CcCCCeeEEEEECC
Confidence 00000 0124568999998887 64666888788999998876531 111100 0 01124689999988
Q ss_pred CCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCC
Q 010206 353 NGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 432 (515)
Q Consensus 353 ~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~ 432 (515)
+|++.++.. +.|.+||..+ + ....+..... ...+ .-..|.++..+++|++.+... +.|..|+..++.
T Consensus 462 ~g~lwigt~-~Gl~~~~~~~-~-~~~~~~~~~~-~~~~-------~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~ 528 (795)
T 4a2l_A 462 EGNLWLGTL-SALVRFNPEQ-R-SFTTIEKEKD-GTPV-------VSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLD 528 (795)
T ss_dssp SSCEEEEES-SCEEEEETTT-T-EEEECCBCTT-CCBC-------CCCCEEEEEECTTCCEEEEES--SCEEEEEEETTE
T ss_pred CCCEEEEec-CceeEEeCCC-C-eEEEcccccc-cccc-------CCceEEEEEECCCCCEEEEeC--CceEEEeCCCCe
Confidence 888776655 4688888764 2 2222211100 0000 001255888898998766544 568889887653
Q ss_pred cceee-----eccCCCceeeEEECCCCCeeEeecCCCeEEEe-cCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEc
Q 010206 433 AESTT-----LEASKNPMRRQVQTPSRPSRPLGSLSGVVRRV-KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 506 (515)
Q Consensus 433 ~~~~~-----~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~-~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~ 506 (515)
. ... -......+.++...++|.+.++.. .|..++- +...... ......-....|.++...++|++.+.+
T Consensus 529 ~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~Gl~~~d~~~~~~~~--~~~~~gl~~~~i~~i~~d~~g~lWi~t- 603 (795)
T 4a2l_A 529 I-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EGFYCFNEKDKQIKR--YNTTNGLPNNVVYGILEDSFGRLWLST- 603 (795)
T ss_dssp E-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SCEEEEETTTTEEEE--ECGGGTCSCSCEEEEEECTTSCEEEEE-
T ss_pred E-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CCceeECCCCCcEEE--eCCCCCCchhheEEEEECCCCCEEEEc-
Confidence 2 100 012345678888888888655444 3766661 1111110 000000113468899999988765544
Q ss_pred CCcEEEEe
Q 010206 507 SNSLYMYY 514 (515)
Q Consensus 507 ~~~~~i~~ 514 (515)
.+|+..|+
T Consensus 604 ~~Gl~~~~ 611 (795)
T 4a2l_A 604 NRGISCFN 611 (795)
T ss_dssp TTEEEEEE
T ss_pred CCceEEEc
Confidence 68888775
No 230
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.89 E-value=1.6e-09 Score=100.66 Aligned_cols=149 Identities=7% Similarity=-0.007 Sum_probs=71.0
Q ss_pred CCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccc
Q 010206 244 SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH 322 (515)
Q Consensus 244 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 322 (515)
.++..++++ .|+.|+.||.++++...... ....... ...++ +. .+ ..+++++.++.+..||.++++...+.
T Consensus 47 ~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~-~~~~~~~-~~sp~----~~-~~-~~v~~g~~dg~v~a~D~~tG~~~w~~ 118 (369)
T 2hz6_A 47 VEEPAFLPDPNDGSLYTLGSKNNEGLTKLP-FTIPELV-QASPC----RS-SD-GILYMGKKQDIWYVIDLLTGEKQQTL 118 (369)
T ss_dssp ---CCEEECTTTCCEEEC-----CCSEECS-CCHHHHH-TTCSC----C-------CCCCEEEEEEEEECCC--------
T ss_pred cCCCEEEEeCCCCEEEEEECCCCceeeeee-ccCcccc-ccCce----Ee-cC-CEEEEEeCCCEEEEEECCCCcEEEEe
Confidence 345566665 79999999998776532210 0000000 01111 11 23 46778889999999999999864321
Q ss_pred cceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccc
Q 010206 323 SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD 401 (515)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (515)
.. + . ...++|++..+++++. +.|+.||.++ ++.+-.+......
T Consensus 119 ----~~------------~-~---~~~~~p~~~~v~~~~~dg~v~a~d~~t-G~~~W~~~~~~~~--------------- 162 (369)
T 2hz6_A 119 ----SS------------A-F---ADSLSPSTSLLYLGRTEYTITMYDTKT-RELRWNATYFDYA--------------- 162 (369)
T ss_dssp ----------------------------------EEEEEEEEEEECCCSSS-SSCCCEEEEEEEC---------------
T ss_pred ----cC------------C-C---cccccccCCEEEEEecCCEEEEEECCC-CCEEEeEeccccc---------------
Confidence 11 1 0 1344567777877764 9999999987 6665555433211
Q ss_pred eeeEEEcCCC---CEEEEecCCCcEEEEecCCCCcceeeec
Q 010206 402 KFECCLSGDG---GRVATGSYSNLFRVFGCSEGSAESTTLE 439 (515)
Q Consensus 402 v~~~~~s~~~---~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 439 (515)
..+++++. ..+++++.||.|+.||.++++ .+...+
T Consensus 163 --~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~-~~W~~~ 200 (369)
T 2hz6_A 163 --ASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD-VLWIQN 200 (369)
T ss_dssp --CBCCCCCTTCCCCEEEEETSCEEEEECTTTCC-EEEEEE
T ss_pred --CccccCCccccceEEEECCCCEEEEEECCCCc-EEEEec
Confidence 23333332 456678889999999999884 334443
No 231
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.89 E-value=7.5e-08 Score=88.12 Aligned_cols=209 Identities=10% Similarity=0.106 Sum_probs=124.3
Q ss_pred CCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCcc
Q 010206 199 FPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPAN 278 (515)
Q Consensus 199 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~ 278 (515)
+.++.++.+..+| .. + .....+ ......+.++...+++.+++...++.|..+|.. ++....
T Consensus 111 ~v~t~~~~l~~~d--~~---g----~~~~~~-~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~-------- 171 (330)
T 3hxj_A 111 YVTSMDGHLYAIN--TD---G----TEKWRF-KTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWR-------- 171 (330)
T ss_dssp EEECTTSEEEEEC--TT---S----CEEEEE-ECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEE--------
T ss_pred EEEecCCEEEEEc--CC---C----CEEEEE-cCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEE--------
Confidence 5566677777766 21 1 111111 223334566677778876665578999999987 543321
Q ss_pred ccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEE
Q 010206 279 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL 358 (515)
Q Consensus 279 ~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 358 (515)
.......+.++...+++ .++ .++ +.+..+| .+++.... +.. ....+.++...++|.+.+
T Consensus 172 ~~~~~~~~~~~~~d~~g-~l~-v~t--~~l~~~d-~~g~~~~~----~~~------------~~~~~~~~~~~~~g~l~v 230 (330)
T 3hxj_A 172 FKTNDAITSAASIGKDG-TIY-FGS--DKVYAIN-PDGTEKWN----FYA------------GYWTVTRPAISEDGTIYV 230 (330)
T ss_dssp EECSSCCCSCCEECTTC-CEE-EES--SSEEEEC-TTSCEEEE----ECC------------SSCCCSCCEECTTSCEEE
T ss_pred EecCCCceeeeEEcCCC-EEE-EEe--CEEEEEC-CCCcEEEE----Ecc------------CCcceeceEECCCCeEEE
Confidence 11223445667777777 444 444 7888999 66543211 111 113477788888887666
Q ss_pred EEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeee
Q 010206 359 SRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL 438 (515)
Q Consensus 359 s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~ 438 (515)
...++.|..+|.. ++.+..+...... +..+.+.+++. |..++.+|.|..+|. ++ .....+
T Consensus 231 ~t~~~gl~~~~~~--g~~~~~~~~~~~~---------------~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g-~~~~~~ 290 (330)
T 3hxj_A 231 TSLDGHLYAINPD--GTEKWRFKTGKRI---------------ESSPVIGNTDT-IYFGSYDGHLYAINP-DG-TEKWNF 290 (330)
T ss_dssp EETTTEEEEECTT--SCEEEEEECSSCC---------------CSCCEECTTSC-EEEECTTCEEEEECT-TS-CEEEEE
T ss_pred EcCCCeEEEECCC--CCEeEEeeCCCCc---------------cccceEcCCCe-EEEecCCCCEEEECC-CC-cEEEEE
Confidence 6556788888642 5554444322211 11455565665 556778888999996 44 344444
Q ss_pred ccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 439 EASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 439 ~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
......+.++...+++. |..++.+|.+++
T Consensus 291 ~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~ 319 (330)
T 3hxj_A 291 ETGSWIIATPVIDENGT-IYFGTRNGKFYA 319 (330)
T ss_dssp ECSSCCCSCCEECTTCC-EEEECTTSCEEE
T ss_pred EcCCccccceEEcCCCE-EEEEcCCCeEEE
Confidence 44556677777777776 455778888887
No 232
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.85 E-value=2.7e-06 Score=79.34 Aligned_cols=259 Identities=11% Similarity=0.074 Sum_probs=135.3
Q ss_pred CcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcc
Q 010206 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (515)
Q Consensus 126 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 205 (515)
+..+++++.++.|..+|..+++.......... +. ..... .++ .+ +.++.++
T Consensus 103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~---------~~------~~p~~-~~~-~v------------~v~~~~g 153 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGE---------AL------SRPVV-SDG-LV------------LIHTSNG 153 (376)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECSSC---------CC------SCCEE-ETT-EE------------EEECTTS
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCc---------eE------cCCEE-ECC-EE------------EEEcCCC
Confidence 45788889999999999999987765544311 10 01111 122 22 5566777
Q ss_pred cEEeeeeeecccccccccceeeeeeccCcCCe------EEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCcc
Q 010206 206 SLRLPVVVVTSQETNLVAGCRRIYAHAHDYHI------NSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 278 (515)
Q Consensus 206 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v------~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 278 (515)
.+..+| ..+.+ ....+.. ...+ ..... .+..++.+ .++.+..+|..+++.........+..
T Consensus 154 ~l~~~d--~~tG~------~~W~~~~--~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~ 221 (376)
T 3q7m_A 154 QLQALN--EADGA------VKWTVNL--DMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATG 221 (376)
T ss_dssp EEEEEE--TTTCC------EEEEEEC--CC-----CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC---
T ss_pred eEEEEE--CCCCc------EEEEEeC--CCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCC
Confidence 788777 32221 1111110 0111 11111 13456666 78999999998877554321000000
Q ss_pred ---ccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCC
Q 010206 279 ---MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 355 (515)
Q Consensus 279 ---~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 355 (515)
+............. + ..++.++.++.+..+|.++++...+ ... .....+... +.
T Consensus 222 ~~~~~~~~~~~~~p~~~-~--~~v~~~~~~g~l~~~d~~tG~~~w~------~~~------------~~~~~~~~~--~~ 278 (376)
T 3q7m_A 222 STEIDRLSDVDTTPVVV-N--GVVFALAYNGNLTALDLRSGQIMWK------REL------------GSVNDFIVD--GN 278 (376)
T ss_dssp --------CCCCCCEEE-T--TEEEEECTTSCEEEEETTTCCEEEE------ECC------------CCEEEEEEE--TT
T ss_pred CcccccccccCCCcEEE-C--CEEEEEecCcEEEEEECCCCcEEee------ccC------------CCCCCceEE--CC
Confidence 00000000011111 2 4677788899999999998875422 110 123333333 44
Q ss_pred EEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc
Q 010206 356 HILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 356 ~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
.++.++ ++.|..+|..+ ++.+-......... ...... .+..|+.++.+|.|+.+|.++++ .
T Consensus 279 ~l~~~~~~g~l~~~d~~t-G~~~w~~~~~~~~~--------------~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~-~ 340 (376)
T 3q7m_A 279 RIYLVDQNDRVMALTIDG-GVTLWTQSDLLHRL--------------LTSPVL--YNGNLVVGDSEGYLHWINVEDGR-F 340 (376)
T ss_dssp EEEEEETTCCEEEEETTT-CCEEEEECTTTTSC--------------CCCCEE--ETTEEEEECTTSEEEEEETTTCC-E
T ss_pred EEEEEcCCCeEEEEECCC-CcEEEeecccCCCc--------------ccCCEE--ECCEEEEEeCCCeEEEEECCCCc-E
Confidence 555554 48999999986 65543332111000 012222 24678888999999999999884 4
Q ss_pred eeeeccCCCceee-EEECCCCCeeEeecCCCeEEE
Q 010206 435 STTLEASKNPMRR-QVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 435 ~~~~~~~~~~v~~-~~~~~~~~~l~s~~~d~~v~l 468 (515)
+...+.....+.. ... .+..|..++.+|.+..
T Consensus 341 ~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~ 373 (376)
T 3q7m_A 341 VAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYS 373 (376)
T ss_dssp EEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEE
T ss_pred EEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEE
Confidence 3444332222221 222 2345666777776654
No 233
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.82 E-value=1.9e-07 Score=85.63 Aligned_cols=255 Identities=10% Similarity=0.058 Sum_probs=136.4
Q ss_pred EEEECCCCCeEEeec----------CCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccC-CCccccccc
Q 010206 40 AIEFDKSGDHLATGD----------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSH-EPEFDYLKS 108 (515)
Q Consensus 40 ~v~~s~~g~~lasg~----------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~~~~~~ 108 (515)
.++|+|||++++++. .++.|.+||..+.+.. .++... ..++
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv-----------------------~~I~v~~~~~~----- 120 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI-----------------------ADIELPDAPRF----- 120 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE-----------------------EEEEETTSCSC-----
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE-----------------------EEEECCCcccc-----
Confidence 699999999999886 3688999999887753 111110 0000
Q ss_pred ccccceeEEEEEeecCCCcEEEeeeC--CCeEEE--EEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCC
Q 010206 109 LEIEEKINKIRWCQSANSALYLLSTN--DKTIKL--WKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (515)
Q Consensus 109 ~~~~~~v~~l~~~~~~~~~~l~~~~~--d~~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~ 184 (515)
........+++ ++++++++++.. +..+.+ +|..+ ...+ ... . ...+.|+|+
T Consensus 121 -~~g~~P~~ia~--SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i-~v~--~-----------------~~~~~p~g~ 175 (368)
T 1mda_H 121 -SVGPRVHIIGN--CASSACLLFFLFGSSAAAGLSVPGASD--DQLT-KSA--S-----------------CFHIHPGAA 175 (368)
T ss_dssp -CBSCCTTSEEE--CTTSSCEEEEECSSSCEEEEEETTTEE--EEEE-ECS--S-----------------CCCCEEEET
T ss_pred -ccCCCcceEEE--cCCCCEEEEEccCCCCeEEEEEEchhh--ceEE-ECC--C-----------------ceEEccCCC
Confidence 00012446777 677888998864 467888 99887 2222 111 0 112334443
Q ss_pred ccccccccCCCCCCCCCCCcccEEeeeeeeccc---ccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEE
Q 010206 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQ---ETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLW 260 (515)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iw 260 (515)
.. +++.+.++.+.+.+ +... +.......... ..-...+. . .+++..++.. . +.+.+.
T Consensus 176 ~~-----------~~~~~~dg~~~~vd--~~~~~~~~~~v~~~~t~~-i~vg~~P~---~-~~~~~~~~~vs~-~~V~vi 236 (368)
T 1mda_H 176 AT-----------HYLGSCPASLAASD--LAAAPAAAGIVGAQCTGA-QNCSSQAA---Q-ANYPGMLVWAVA-SSILQG 236 (368)
T ss_dssp TE-----------EECCCCTTSCEEEE--CCSSCCCCEECCCCSCTT-SCBCSCCE---E-ETTTTEEEECBS-SCCEEE
T ss_pred eE-----------EEEEcCCCCEEEEE--CccccccCCeEEEEeeee-eeCCCCcc---c-cccCCEEEEEcC-CEEEEE
Confidence 32 13444566655555 2210 00000000000 01111222 3 4555555544 7 899999
Q ss_pred eCCCCCc-ccceecccCccccc---cCCceEEEEEecCCCcEEEEEec---------CCeEEEEecCcccccccccceee
Q 010206 261 NLEISNQ-SFNIVDVKPANMED---LTEVITSAEFHPTHCNMLAYSSS---------KGSIRLIDMRQSALCDTHSKLFE 327 (515)
Q Consensus 261 d~~~~~~-~~~~~~~~~~~~~~---~~~~i~~i~~~p~~~~~l~~~~~---------dg~i~~wd~~~~~~~~~~~~~~~ 327 (515)
|+..... ....+.+....... .......++++|++ +.++.+.. ++.+.++|+.+++...+ +.
T Consensus 237 D~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg-~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~----i~ 311 (368)
T 1mda_H 237 DIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNT-DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP----IS 311 (368)
T ss_dssp ECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTT-TEEEEEEEECSSCTTSCEEEEEEEESSSCCEEEC----CE
T ss_pred ECCCCcceEEEEEEeccccccccccccCcceeeEEcCCC-CEEEEEeccccCcccccCCCEEEEECCCCeEEEE----EE
Confidence 9864321 11111110000000 11112226899998 55554432 23566999998875432 22
Q ss_pred eccCCCccccccccccceeEEEEccCCCE-EEEEc--CCeEEEEEeeCCCCCeeeEeeecc
Q 010206 328 EQEAPGTRSFFTEIIASISDIKFARNGRH-ILSRD--YMTLKLWDINMDSGPVATFQVHEH 385 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~s~~--~~~i~iwd~~~~~~~~~~~~~~~~ 385 (515)
.. .....++|+|||+. +++.. ++.|.++|+.+ .+.+.++.....
T Consensus 312 vg-------------~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t-~kvv~~I~vg~~ 358 (368)
T 1mda_H 312 NG-------------HDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS-DQDQSSVELDKG 358 (368)
T ss_dssp EE-------------EEECEEEECCSSSCEEEEEETTTTEEEEEESSS-CEEEEECCCCSC
T ss_pred CC-------------CCcceEEECCCCCEEEEEccCCCCeEEEEECCC-CcEEEEEECCCC
Confidence 11 24788999999984 55544 49999999997 777777765443
No 234
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.81 E-value=1e-06 Score=88.63 Aligned_cols=334 Identities=10% Similarity=0.038 Sum_probs=172.3
Q ss_pred CcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccC--CCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCC
Q 010206 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKA--AGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGG 203 (515)
Q Consensus 126 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~ 203 (515)
+..+++++.++.|..+|..+++.+............ .....+. ..++. ++..+ +.++.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~------~~~~~--~~g~v------------~v~~~ 129 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVN------RGVAV--WKGKV------------YVGVL 129 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCC------CCCEE--ETTEE------------EEECT
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCC------CccEE--ECCEE------------EEEcc
Confidence 347788888899999999999988776543221100 0000000 01111 22333 66777
Q ss_pred cccEEeeeeeecccccccccceeeeeecc-CcCCeEEEEecC---CCCEEEEeC------CCcEEEEeCCCCCcccceec
Q 010206 204 VSSLRLPVVVVTSQETNLVAGCRRIYAHA-HDYHINSISNNS---DGETFISAD------DLRINLWNLEISNQSFNIVD 273 (515)
Q Consensus 204 ~~~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~---~~~~l~s~~------d~~i~iwd~~~~~~~~~~~~ 273 (515)
++.+..+| ..+. +....+... +......+..+| ++..++... ++.|+.||.++++...+...
T Consensus 130 dg~l~AlD--a~TG------~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 201 (689)
T 1yiq_A 130 DGRLEAID--AKTG------QRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYT 201 (689)
T ss_dssp TSEEEEEE--TTTC------CEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEE--CCCC------CEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecc
Confidence 88888877 3222 222221111 111111111122 444444322 68999999998886544321
Q ss_pred cc--Cc-c-----c-------c--------ccCCceEEEEEecCCCcEEEEEecCCe-------------------EEEE
Q 010206 274 VK--PA-N-----M-------E--------DLTEVITSAEFHPTHCNMLAYSSSKGS-------------------IRLI 311 (515)
Q Consensus 274 ~~--~~-~-----~-------~--------~~~~~i~~i~~~p~~~~~l~~~~~dg~-------------------i~~w 311 (515)
.. +. . + . ++......++++|++ .+++.+..++. |..+
T Consensus 202 ~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~Al 280 (689)
T 1yiq_A 202 VPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAV 280 (689)
T ss_dssp SCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEE
T ss_pred cCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 10 00 0 0 0 111112367889987 78888887764 9999
Q ss_pred ecCcccccccccceeeeccCCCccccccccccceeEEEEccCCC---EEEEEcC-CeEEEEEeeCCCCCeeeEeeecc-c
Q 010206 312 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR---HILSRDY-MTLKLWDINMDSGPVATFQVHEH-L 386 (515)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~---~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~-~ 386 (515)
|.++++..... +..... ..-+. ...++.......+|+ .++.++. |.++++|..+ ++++........ .
T Consensus 281 D~~TG~~~W~~----~~~~~d--~wd~~-~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~w 352 (689)
T 1yiq_A 281 NADTGEYVWHY----QTTPGD--AWDYT-ATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRAT-GELLSAKGIVPQSW 352 (689)
T ss_dssp ETTTCCEEEEE----ESSTTC--CSCCC-CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEEESSCCSS
T ss_pred EccCCceeEee----ecCCcc--ccccc-CCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCC-CCEecccccccccc
Confidence 99999865431 110000 00000 011222222333565 6777765 9999999987 776643322110 0
Q ss_pred ccccc----------c-c--ccCCC----------ccceeeEEEcCCCCEEEEecC------------------------
Q 010206 387 RPKLC----------D-L--YENDS----------IFDKFECCLSGDGGRVATGSY------------------------ 419 (515)
Q Consensus 387 ~~~~~----------~-~--~~~~~----------~~~v~~~~~s~~~~~l~s~s~------------------------ 419 (515)
...+. . . +.... -..-..++++|+..++++.+.
T Consensus 353 ~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (689)
T 1yiq_A 353 TKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQL 432 (689)
T ss_dssp EEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCC
T ss_pred ccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccccccccccccccc
Confidence 00000 0 0 00000 000124789999888776532
Q ss_pred ---------------------CCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEec---CCCCC
Q 010206 420 ---------------------SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK---GADNS 475 (515)
Q Consensus 420 ---------------------dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~---~~~~~ 475 (515)
+|.|+.||+.++ +.+-.++.+. +...-.+...+..++.++.||.++.++ |..++
T Consensus 433 g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG-~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw 510 (689)
T 1yiq_A 433 GLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ-QAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLW 510 (689)
T ss_dssp SSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT-EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CccccccCcccccCCCCCCCcceeEEEEECCCC-CeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccce
Confidence 478999999988 4444444443 233335555777889999999999943 33334
Q ss_pred ccccCCccccccCCeeEEEEcCCCCEEE
Q 010206 476 ALDANGNAFDFSMKLLHLAWHPSENSIA 503 (515)
Q Consensus 476 ~~~~~~~~~~~~~~i~~~~~s~~~~~la 503 (515)
...+. ......-+.|..+|+..+
T Consensus 511 ~~~~~-----~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 511 EQPAA-----SGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp EEECS-----SCCCSCCEEEEETTEEEE
T ss_pred eeeCC-----CCcccCceEEEECCEEEE
Confidence 21111 122224477788887544
No 235
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.78 E-value=2.3e-05 Score=69.03 Aligned_cols=177 Identities=11% Similarity=0.023 Sum_probs=102.0
Q ss_pred CCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEec--CCeEEE
Q 010206 235 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS--KGSIRL 310 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~--dg~i~~ 310 (515)
.....+++++++..|..+ ..+.|.++++...... .+. .........++++|++..++++... .+.|..
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~-~~~-------~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~ 150 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR-VLF-------DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIET 150 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEE-------CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEE
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE-EEE-------ECCCCCccEEEEeeCCCEEEEEECCCCCcEEEE
Confidence 356788999876655554 5789999998643211 111 1112457899999965244444433 468888
Q ss_pred EecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-C-CeEEEEEeeCCCCCeeeEeeeccccc
Q 010206 311 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRP 388 (515)
Q Consensus 311 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~ 388 (515)
+++..... ..+.. ........+++++++..|+.++ . +.|.++|+.. .. ...+......
T Consensus 151 ~~~dg~~~-----~~~~~-----------~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g-~~-~~~~~~~~~~-- 210 (267)
T 1npe_A 151 SHMDGTNR-----RILAQ-----------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ-PG-RRKVLEGLQY-- 210 (267)
T ss_dssp EETTSCCC-----EEEEC-----------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE-EE-EEEEEECCCS--
T ss_pred EecCCCCc-----EEEEE-----------CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC-Cc-eEEEecCCCC--
Confidence 88753221 11110 0013468899999888777664 3 8999999863 22 2222111000
Q ss_pred cccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCC-CceeeEEECCCC
Q 010206 389 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASK-NPMRRQVQTPSR 454 (515)
Q Consensus 389 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~-~~v~~~~~~~~~ 454 (515)
-..++.. ++.++++....+.|..+|..++ .....+.... .....+++.|++
T Consensus 211 -------------P~gi~~d-~~~lyva~~~~~~v~~~d~~~g-~~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 211 -------------PFAVTSY-GKNLYYTDWKTNSVIAMDLAIS-KEMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp -------------EEEEEEE-TTEEEEEETTTTEEEEEETTTT-EEEEEECCSSCCCCCCEEEECSC
T ss_pred -------------ceEEEEe-CCEEEEEECCCCeEEEEeCCCC-CceEEEccccccccceeeecCcc
Confidence 1255554 3444455556789999999877 3444554332 235677777764
No 236
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.77 E-value=0.00016 Score=74.51 Aligned_cols=393 Identities=10% Similarity=-0.002 Sum_probs=200.5
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccce
Q 010206 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (515)
Q Consensus 35 ~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (515)
...|.++...++|.+.+ |+..+-|.+++..+..... +. .+.+........ . ..+ ....
T Consensus 257 ~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~-----~~--------~~~f~~~~~~~~-~------~~l-~~~~ 314 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLWI-ATELNGIMILDLQQNQFLL-----PE--------QIRFEFIREGDN-N------YSL-SNAS 314 (781)
T ss_dssp CCCEEEEEECTTSEEEE-EESSSCEEEEETTCC----------------------CEEECBCSS-T------TSB-SSSC
T ss_pred CceEEEEEECCCCCEEE-EeCCCCeEEECCCCCeeee-----ee--------ccccccccCCCC-C------CCC-CCCe
Confidence 35699999988886554 5553458888876554210 00 000000000000 0 000 0145
Q ss_pred eEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccC-CcccCCCCCCccCCCCcCCCceeecCCCccccccccC
Q 010206 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNV-HPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (515)
Q Consensus 115 v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~ 193 (515)
|.++.. +.++ .|-.|+.++-|..++.............. ..........|. ++...++|..
T Consensus 315 v~~i~~--D~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~-------~i~~d~~g~l-------- 376 (781)
T 3v9f_A 315 ARYIFQ--DSFN-NIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVS-------SVCDDGQGKL-------- 376 (781)
T ss_dssp EEEEEE--CSSC-CEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEE-------EEEECTTSCE--------
T ss_pred EEEEEE--eCCC-CEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceE-------EEEEcCCCCE--------
Confidence 888877 5555 46677777778999887765444321100 000011112222 3334444443
Q ss_pred CCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceec
Q 010206 194 SNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVD 273 (515)
Q Consensus 194 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~ 273 (515)
..|+.++.|..++ ......... ... .......|.++...+++.+.+...++-+..+|..+++... .
T Consensus 377 -----Wigt~~~Gl~~~~--~~~~~~~~~---~~~-~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~--~- 442 (781)
T 3v9f_A 377 -----WIGTDGGGINVFE--NGKRVAIYN---KEN-RELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQI--I- 442 (781)
T ss_dssp -----EEEEBSSCEEEEE--TTEEEEECC---------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEE--C-
T ss_pred -----EEEeCCCcEEEEE--CCCCeEEEc---cCC-CCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEE--e-
Confidence 5556556677666 211100000 000 0123467899998888887775566678888886543211 0
Q ss_pred ccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccC
Q 010206 274 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 353 (515)
Q Consensus 274 ~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 353 (515)
.. . ......|.++...+++ .+ ..|+. +.+..||..+++.. .+...... ......|.++...++
T Consensus 443 -~~-~-~~~~~~v~~i~~d~~g-~l-wigt~-~Gl~~~~~~~~~~~-----~~~~~~~~------~~~~~~i~~i~~d~~ 505 (781)
T 3v9f_A 443 -EL-E-KNELLDVRVFYEDKNK-KI-WIGTH-AGVFVIDLASKKVI-----HHYDTSNS------QLLENFVRSIAQDSE 505 (781)
T ss_dssp -CS-T-TTCCCCEEEEEECTTS-EE-EEEET-TEEEEEESSSSSCC-----EEECTTTS------SCSCSCEEEEEECTT
T ss_pred -cc-C-CCCCCeEEEEEECCCC-CE-EEEEC-CceEEEeCCCCeEE-----ecccCccc------ccccceeEEEEEcCC
Confidence 00 0 1134678999988887 44 44555 56888998765431 11110000 001256899999999
Q ss_pred CCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCc
Q 010206 354 GRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 433 (515)
Q Consensus 354 ~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~ 433 (515)
|++.++...+-|..||... .....+...... .-..|.++...++|++.++.. +|.|..||..++..
T Consensus 506 g~lWigt~~~Gl~~~~~~~--~~~~~~~~~~~l-----------~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~ 571 (781)
T 3v9f_A 506 GRFWIGTFGGGVGIYTPDM--QLVRKFNQYEGF-----------CSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDY 571 (781)
T ss_dssp CCEEEEESSSCEEEECTTC--CEEEEECTTTTC-----------SCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCC
T ss_pred CCEEEEEcCCCEEEEeCCC--CeEEEccCCCCC-----------CCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcE
Confidence 9877766544577777653 233333211110 011255888888888666444 66558898876532
Q ss_pred ceeee-cc-CCCceeeEEECCCCCeeEeecCCCeEEE-ecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcE
Q 010206 434 ESTTL-EA-SKNPMRRQVQTPSRPSRPLGSLSGVVRR-VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSL 510 (515)
Q Consensus 434 ~~~~~-~~-~~~~v~~~~~~~~~~~l~s~~~d~~v~l-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~ 510 (515)
..... .+ ....+.++...++|.+.++ +..|..++ .+..........-......-...++...++|++ ..|+.+|+
T Consensus 572 ~~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l-~~g~~~Gl 649 (781)
T 3v9f_A 572 QVFQRKEGLPNTHIRAISEDKNGNIWAS-TNTGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLI-YFGSINGL 649 (781)
T ss_dssp EEECGGGTCSCCCCCEEEECSSSCEEEE-CSSCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCE-EEEETTEE
T ss_pred EEccccCCCCCceEEEEEECCCCCEEEE-cCCceEEEECCCCceEEecccCCccccccccCceEECCCCEE-EEECCCce
Confidence 21111 11 1345778888888875554 46777776 111111000000000001112346677777764 55666788
Q ss_pred EEEe
Q 010206 511 YMYY 514 (515)
Q Consensus 511 ~i~~ 514 (515)
..|+
T Consensus 650 ~~f~ 653 (781)
T 3v9f_A 650 CFFN 653 (781)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8775
No 237
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.76 E-value=8.5e-07 Score=84.80 Aligned_cols=200 Identities=8% Similarity=0.073 Sum_probs=117.6
Q ss_pred CCeEEEEe-c-CCCCEEEEeC-------------------CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEec
Q 010206 235 YHINSISN-N-SDGETFISAD-------------------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP 293 (515)
Q Consensus 235 ~~v~~~~~-~-~~~~~l~s~~-------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p 293 (515)
..+..+++ + |+++++.++. ++.+.+.|.++.+...++. . .+....++++|
T Consensus 134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~------V---gg~pd~~~~sp 204 (595)
T 1fwx_A 134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVL------V---SGNLDNCDADY 204 (595)
T ss_dssp CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEE------E---SSCCCCEEECS
T ss_pred CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEE------e---CCCccceEECC
Confidence 45778887 5 8888887761 3578888888765443321 1 11345678999
Q ss_pred CCCcEEEEEecCC---------------eEEEEecCcccccc--------cccceeeeccCCCcc--ccccccccceeEE
Q 010206 294 THCNMLAYSSSKG---------------SIRLIDMRQSALCD--------THSKLFEEQEAPGTR--SFFTEIIASISDI 348 (515)
Q Consensus 294 ~~~~~l~~~~~dg---------------~i~~wd~~~~~~~~--------~~~~~~~~~~~~~~~--~~~~~~~~~i~~~ 348 (515)
+| +++++.+.+. .|.+.|........ ..+..++........ ..+. -.....++
T Consensus 205 dG-k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv 282 (595)
T 1fwx_A 205 EG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGC 282 (595)
T ss_dssp SS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEE-EESSCCCE
T ss_pred CC-CEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEe-cCCCceEE
Confidence 98 6777766543 35566544321100 011222222100000 0011 11245779
Q ss_pred EEccCCCEEEEEcC--CeEEEEEeeCCCC------------CeeeEeeeccccccccccccCCCccceeeEEEcCCCCEE
Q 010206 349 KFARNGRHILSRDY--MTLKLWDINMDSG------------PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 414 (515)
Q Consensus 349 ~~s~~~~~l~s~~~--~~i~iwd~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 414 (515)
.++|||+++++++. .+|.++|+.+ .+ ......... .-..++|+|+|...
T Consensus 283 ~~sPDGk~v~V~~~~s~~VsVid~~~-~~~~~~~~l~~~~~v~~~v~vG~----------------gP~h~aF~~dG~aY 345 (595)
T 1fwx_A 283 NMAPDKKHLCVAGKLSPTVTVLDVTR-FDAVFYENADPRSAVVAEPELGL----------------GPLHTAFDGRGNAY 345 (595)
T ss_dssp EECTTSSEEEEECTTSSBEEEEEGGG-HHHHHHSCCCGGGGEEECCBCCS----------------CEEEEEECTTSEEE
T ss_pred EEcCCCCEEEEeCCCCCeEEEEECcc-cccccccccCcccceEEEcCCCC----------------CcceEEECCCCeEE
Confidence 99999999998753 8999999985 21 111111111 12378999999444
Q ss_pred EEecCCCcEEEEecCCC---------CcceeeeccCCCce-----eeEEECCCCCeeEeecC
Q 010206 415 ATGSYSNLFRVFGCSEG---------SAESTTLEASKNPM-----RRQVQTPSRPSRPLGSL 462 (515)
Q Consensus 415 ~s~s~dg~i~iw~~~~~---------~~~~~~~~~~~~~v-----~~~~~~~~~~~l~s~~~ 462 (515)
++.-.|+.|.+||+.+. .+.+.++..|..|- ..+..+|||++|++.+.
T Consensus 346 ~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 346 TSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp EEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred EEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 56678999999999862 23446666665543 23456899999988743
No 238
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.69 E-value=0.00025 Score=72.95 Aligned_cols=396 Identities=10% Similarity=0.013 Sum_probs=198.7
Q ss_pred cceEEEEECC--CCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccc
Q 010206 36 DIISAIEFDK--SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (515)
Q Consensus 36 ~~v~~v~~s~--~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (515)
..|.++.... +|.+.+ ++.++-|..|+..+++.. .+..... ..+. ..
T Consensus 115 ~~i~~i~~d~~~~g~lwi-~t~~~gl~~~~~~~~~~~------------------------~~~~~~~-----~~l~-~~ 163 (781)
T 3v9f_A 115 NDVTHITSSVQAGKGLWV-CTYYRGIEYLDIATGKFT------------------------HYNKSTV-----PALP-SE 163 (781)
T ss_dssp SCEEEEEECSSTTSEEEE-EESSSCEEEEETTTTEEE------------------------EESTTTC-----TTCS-CC
T ss_pred CcceEEEecCccCCCEEE-EECCCCeeEEECCCCeEE------------------------eeccCcc-----cCCC-cc
Confidence 3688998888 776544 553444888887654421 0000000 0000 13
Q ss_pred eeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccC
Q 010206 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (515)
Q Consensus 114 ~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~ 193 (515)
.|.++.. ..++ .|..++.++-|..||..+++..........+ .......+. .+...++|..
T Consensus 164 ~i~~i~~--d~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~-~~l~~~~i~-------~i~~d~~g~l-------- 224 (781)
T 3v9f_A 164 QTWTATE--AEDG-KLYIGHVEGGLSILSLNDKSVKHFVHDPQNP-NSLPGNDVR-------CIYKDTNGNI-------- 224 (781)
T ss_dssp CEEEEEE--EETT-EEEEEETTTEEEEEETTTTEEEEECC---------CCSSEE-------EEEECTTCCE--------
T ss_pred ceEEEEE--CCCC-CEEEEecCCCeEEEcCCCCceEeeecCCCCc-ccCCCCcee-------EEEEcCCCCE--------
Confidence 4777766 3344 5666776656889998887654432111000 000111222 3334444543
Q ss_pred CCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceec
Q 010206 194 SNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVD 273 (515)
Q Consensus 194 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~ 273 (515)
..++.. .+.+|| ..................-....|.++...+++.+.+....+-|.++|..+..... ...
T Consensus 225 -----wigt~~-Gl~~~d--~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~-~~~ 295 (781)
T 3v9f_A 225 -----WIGTSK-GLALFN--ANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLL-PEQ 295 (781)
T ss_dssp -----EEEETT-EEEEEE--TTTTEEEC-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC--------
T ss_pred -----EEEeCC-cHheEC--CCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeee-eec
Confidence 334444 566666 22111100000000000012356899999888877665554568888887543211 000
Q ss_pred -------ccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccccee
Q 010206 274 -------VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 346 (515)
Q Consensus 274 -------~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 346 (515)
............|.++...++| . |-.|+.++-|..|+...... ..+.......... .-....|.
T Consensus 296 ~~f~~~~~~~~~~~l~~~~v~~i~~D~~g-~-lWigt~~~Gl~~~~~~~~~~-----~~~~~~~~~~~~~--~l~~~~v~ 366 (781)
T 3v9f_A 296 IRFEFIREGDNNYSLSNASARYIFQDSFN-N-IWIGTWGGGINFISNAPPTF-----HTWSYSPTQMNES--SLSNKVVS 366 (781)
T ss_dssp --CEEECBCSSTTSBSSSCEEEEEECSSC-C-EEEEEBSSCEEEECSSCCSC-----EEEC----CCCSS--CCSSSCEE
T ss_pred cccccccCCCCCCCCCCCeEEEEEEeCCC-C-EEEEecCCeEEEeCCCCCcc-----eeeccCccccccC--CCCCcceE
Confidence 0000011234679999999887 4 55577777888888765432 1111000000000 00124689
Q ss_pred EEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEE
Q 010206 347 DIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 426 (515)
Q Consensus 347 ~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw 426 (515)
++...++|.+.+...++-|..||..+ . ....+...... .-..|.++...++|++.+ |+.++.|..+
T Consensus 367 ~i~~d~~g~lWigt~~~Gl~~~~~~~-~-~~~~~~~~~~~-----------~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~ 432 (781)
T 3v9f_A 367 SVCDDGQGKLWIGTDGGGINVFENGK-R-VAIYNKENREL-----------LSNSVLCSLKDSEGNLWF-GTYLGNISYY 432 (781)
T ss_dssp EEEECTTSCEEEEEBSSCEEEEETTE-E-EEECC-----C-----------CCSBEEEEEECTTSCEEE-EETTEEEEEE
T ss_pred EEEEcCCCCEEEEeCCCcEEEEECCC-C-eEEEccCCCCC-----------CCcceEEEEECCCCCEEE-EeccCCEEEE
Confidence 99998888766654456688888653 1 11111100000 011255888888887655 6666778899
Q ss_pred ecCCCCcceeee-ccCCCceeeEEECCCCCeeEeecCCCeEEE-ecCCCCCccccCCccccccCCeeEEEEcCCCCEEEE
Q 010206 427 GCSEGSAESTTL-EASKNPMRRQVQTPSRPSRPLGSLSGVVRR-VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIAC 504 (515)
Q Consensus 427 ~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~ 504 (515)
+..++....... ......|.++...+++.+.+.. ..|..++ .+..+................|.++...++|++.+.
T Consensus 433 ~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt-~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig 511 (781)
T 3v9f_A 433 NTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGT-HAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG 511 (781)
T ss_dssp CSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEE-TTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE
T ss_pred cCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEE-CCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE
Confidence 987653221111 1234678888888887755444 4665555 122111100000000011467899999999887665
Q ss_pred EcCCcEEEEe
Q 010206 505 AASNSLYMYY 514 (515)
Q Consensus 505 ~~~~~~~i~~ 514 (515)
...+|++.|+
T Consensus 512 t~~~Gl~~~~ 521 (781)
T 3v9f_A 512 TFGGGVGIYT 521 (781)
T ss_dssp ESSSCEEEEC
T ss_pred EcCCCEEEEe
Confidence 5557888774
No 239
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.65 E-value=3e-06 Score=85.09 Aligned_cols=78 Identities=9% Similarity=0.009 Sum_probs=51.3
Q ss_pred CeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeec
Q 010206 306 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHE 384 (515)
Q Consensus 306 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~ 384 (515)
|.|..||+.+++...+. . +..++....+..++..++.++. +.+++||..+ ++.+..+....
T Consensus 457 g~l~A~D~~tG~~~W~~----~-------------~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t-G~~lw~~~~~~ 518 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSV----E-------------HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAAT-GEKLWEAPTGT 518 (677)
T ss_dssp EEEEEEETTTTEEEEEE----E-------------ESSSCCCCEEEETTTEEEEECTTSEEEEEETTT-CCEEEEEECSS
T ss_pred cEEEEEeCCCCcEEeec----C-------------CCCCCcCcceEeCCCEEEEECCCCcEEEEECCC-CceeeeeeCCC
Confidence 67899999888764331 1 1123344456667778888765 9999999997 88888887554
Q ss_pred cccccccccccCCCccceeeEEEcCCCCEEE
Q 010206 385 HLRPKLCDLYENDSIFDKFECCLSGDGGRVA 415 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 415 (515)
... ..-+.+..+|+.++
T Consensus 519 ~~~--------------~~p~~y~~~G~~~v 535 (677)
T 1kb0_A 519 GVV--------------AAPSTYMVDGRQYV 535 (677)
T ss_dssp CCC--------------SCCEEEEETTEEEE
T ss_pred Ccc--------------cCCEEEEeCCEEEE
Confidence 321 11466777887544
No 240
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.63 E-value=2.8e-06 Score=77.55 Aligned_cols=212 Identities=11% Similarity=0.049 Sum_probs=119.2
Q ss_pred CCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccc
Q 010206 246 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK 324 (515)
Q Consensus 246 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 324 (515)
+..+..+ .++.|..+|.. ++.... .......+.++...+++ . +..++.++.+..||.. ++....
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~--------~~~~~~~~~~~~~~~~g-~-l~vgt~~~~l~~~d~~-g~~~~~--- 171 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWR--------FKTKKAIYATPIVSEDG-T-IYVGSNDNYLYAINPD-GTEKWR--- 171 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEE--------EECSSCCCSCCEECTTS-C-EEEECTTSEEEEECTT-SCEEEE---
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEE--------EcCCCceeeeeEEcCCC-E-EEEEcCCCEEEEECCC-CCEeEE---
Confidence 3345555 78899999987 543322 11223345566677776 4 5667888999999987 553221
Q ss_pred eeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceee
Q 010206 325 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE 404 (515)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 404 (515)
+... ...+.++.+.+++.+.++. +.|..+| .+ ++....+...... +.+
T Consensus 172 -~~~~------------~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~-g~~~~~~~~~~~~---------------~~~ 219 (330)
T 3hxj_A 172 -FKTN------------DAITSAASIGKDGTIYFGS--DKVYAIN-PD-GTEKWNFYAGYWT---------------VTR 219 (330)
T ss_dssp -EECS------------SCCCSCCEECTTCCEEEES--SSEEEEC-TT-SCEEEEECCSSCC---------------CSC
T ss_pred -EecC------------CCceeeeEEcCCCEEEEEe--CEEEEEC-CC-CcEEEEEccCCcc---------------eec
Confidence 1111 1346667777778766555 7889998 43 5544443322211 337
Q ss_pred EEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccc
Q 010206 405 CCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAF 484 (515)
Q Consensus 405 ~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~ 484 (515)
+..+++|.+. .++.++.|..++. ++ .....+......+..+...+++ .|..++.+|.+..++.. + +......
T Consensus 220 ~~~~~~g~l~-v~t~~~gl~~~~~-~g-~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~~---g-~~~~~~~ 291 (330)
T 3hxj_A 220 PAISEDGTIY-VTSLDGHLYAINP-DG-TEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINPD---G-TEKWNFE 291 (330)
T ss_dssp CEECTTSCEE-EEETTTEEEEECT-TS-CEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECTT---S-CEEEEEE
T ss_pred eEECCCCeEE-EEcCCCeEEEECC-CC-CEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECCC---C-cEEEEEE
Confidence 7888887654 4566778888874 33 3334444444444556665555 45556667655553211 0 0000111
Q ss_pred cccCCeeEEEEcCCCCEEEEEcCCcEEEE
Q 010206 485 DFSMKLLHLAWHPSENSIACAASNSLYMY 513 (515)
Q Consensus 485 ~~~~~i~~~~~s~~~~~la~~~~~~~~i~ 513 (515)
.....+.++...+++++. +++.+|++.+
T Consensus 292 ~~~~~~~~~~~d~~g~l~-~gt~~G~~~~ 319 (330)
T 3hxj_A 292 TGSWIIATPVIDENGTIY-FGTRNGKFYA 319 (330)
T ss_dssp CSSCCCSCCEECTTCCEE-EECTTSCEEE
T ss_pred cCCccccceEEcCCCEEE-EEcCCCeEEE
Confidence 123456777787887754 4665665443
No 241
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.61 E-value=3e-06 Score=81.11 Aligned_cols=261 Identities=10% Similarity=0.021 Sum_probs=146.7
Q ss_pred CCCCeEEeecC-CCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEEEeec
Q 010206 45 KSGDHLATGDR-GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQS 123 (515)
Q Consensus 45 ~~g~~lasg~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~ 123 (515)
+||++|..... +++|.+.|+.+.+.... ..+.. ......+++...
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~i---------------------i~ip~-------------g~~phg~~~~~~ 144 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAI---------------------LEIPN-------------AKGIHGLRPQKW 144 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEE---------------------EECSS-------------CCSEEEEEECCS
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeE---------------------EeCCC-------------CCCCcceeeeec
Confidence 38888877664 56899999987664310 01110 133666666322
Q ss_pred CCCcEEEeee------------------CCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCc
Q 010206 124 ANSALYLLST------------------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (515)
Q Consensus 124 ~~~~~l~~~~------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 185 (515)
+++.++++++ .++.+.+.|..+.+..........+. .++++|+|+.
T Consensus 145 p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd----------------~~~~spdGk~ 208 (595)
T 1fwx_A 145 PRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLD----------------NCDADYEGKW 208 (595)
T ss_dssp SBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCC----------------CEEECSSSSE
T ss_pred CCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCcc----------------ceEECCCCCE
Confidence 5666777763 35689999999988777666532221 6778888887
Q ss_pred cccccccCCC------------CCCC------------CCC--CcccEEeeeeeecccccccccceeeeeeccCcCCeEE
Q 010206 186 GERNFGCASN------------DSSF------------PPG--GVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINS 239 (515)
Q Consensus 186 l~~~~~~~~~------------~~~~------------~~~--~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 239 (515)
+-........ +.+. .|. .-+.+.+.| ....+.. ...... .-.....+
T Consensus 209 ~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID--~~~~~~~---~~~~~I--pvg~~PhG 281 (595)
T 1fwx_A 209 AFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVD--GRKEASS---LFTRYI--PIANNPHG 281 (595)
T ss_dssp EEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEE--CSGGGCC---SSEEEE--EEESSCCC
T ss_pred EEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEe--CcccCCc---eeEEEE--ecCCCceE
Confidence 7433211100 0000 000 002355544 2211000 001111 11235678
Q ss_pred EEecCCCCEEEEe--CCCcEEEEeCCCCCcccc-eecccC---ccccccCCceEEEEEecCCCcEEEEEecCCeEEEEec
Q 010206 240 ISNNSDGETFISA--DDLRINLWNLEISNQSFN-IVDVKP---ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 313 (515)
Q Consensus 240 ~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~-~~~~~~---~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~ 313 (515)
+.++|||++++++ .+.+|.++|+.+.+.... .++... ... .-......++|+|+| ...++...|+.|.+||+
T Consensus 282 v~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi 359 (595)
T 1fwx_A 282 CNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNI 359 (595)
T ss_dssp EEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEEEEEECTTS-EEEEEETTTTEEEEEEH
T ss_pred EEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCCCcceEEECCCC-eEEEEEecCCcEEEEEh
Confidence 9999999998886 599999999985421100 000000 011 123457899999999 77778888999999998
Q ss_pred Cccc------ccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC---CeE-----------EEEEee
Q 010206 314 RQSA------LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY---MTL-----------KLWDIN 371 (515)
Q Consensus 314 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~---~~i-----------~iwd~~ 371 (515)
.... .....+..+..+. -.+|...-..+.++|||++|++... .++ .++|+.
T Consensus 360 ~~a~~~~~g~~~~~vi~kidV~y-------qpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis 430 (595)
T 1fwx_A 360 EDAIRAYAGEKVDPIKDKLDVHY-------QPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDIS 430 (595)
T ss_dssp HHHHHHHHTCSCCCEEEEEECSS-------CEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECS
T ss_pred hHhhhhhcccccceeEEEeeccc-------ccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcC
Confidence 7631 1111222222221 1133333344567899999999643 344 889985
No 242
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.61 E-value=1.5e-08 Score=94.05 Aligned_cols=176 Identities=8% Similarity=0.007 Sum_probs=86.9
Q ss_pred CCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCccccccccc
Q 010206 245 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS 323 (515)
Q Consensus 245 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 323 (515)
++..++++ .|+.|+.||..+++...+. .. +.+.+..+..++ .++++++.|+.|+.||..+++...+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~--------~~--~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~w~~~ 76 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTL--------KE--DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGLTKLP 76 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEE--------EC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEe--------cC--CCceecceEcCC-CEEEEeCCCCEEEEEECCCCceeeeee
Confidence 45667776 8999999999988765432 11 334444455666 678878899999999998887532211
Q ss_pred ceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccce
Q 010206 324 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 402 (515)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 402 (515)
. .... . ....++ +. ++..+++++ ++.|+.||..+ ++.+..+..+.
T Consensus 77 ~--~~~~-------~-~~~sp~----~~-~~~~v~~g~~dg~v~a~D~~t-G~~~w~~~~~~------------------ 122 (369)
T 2hz6_A 77 F--TIPE-------L-VQASPC----RS-SDGILYMGKKQDIWYVIDLLT-GEKQQTLSSAF------------------ 122 (369)
T ss_dssp C--CHHH-------H-HTTCSC----C------CCCCEEEEEEEEECCC-------------------------------
T ss_pred c--cCcc-------c-cccCce----Ee-cCCEEEEEeCCCEEEEEECCC-CcEEEEecCCC------------------
Confidence 0 0000 0 000111 11 233455554 48999999987 76665554432
Q ss_pred eeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCC---CeeEeecCCCeEEEe
Q 010206 403 FECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR---PSRPLGSLSGVVRRV 469 (515)
Q Consensus 403 ~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~s~~~d~~v~l~ 469 (515)
...++|++..|++++.|+.|+.||.++++.+ ..+..+. ....++.++. ..++.++.||.+..+
T Consensus 123 -~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~-W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~ 188 (369)
T 2hz6_A 123 -ADSLSPSTSLLYLGRTEYTITMYDTKTRELR-WNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTV 188 (369)
T ss_dssp -----------EEEEEEEEEEECCCSSSSSCC-CEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEE
T ss_pred -cccccccCCEEEEEecCCEEEEEECCCCCEE-EeEeccc--ccCccccCCccccceEEEECCCCEEEEE
Confidence 1234568888999999999999999988433 3332211 1233344432 456677888988873
No 243
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.60 E-value=3.2e-05 Score=70.23 Aligned_cols=156 Identities=9% Similarity=0.025 Sum_probs=88.3
Q ss_pred eEEEEecC-CCCEEEEe-C-----------------CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCc
Q 010206 237 INSISNNS-DGETFISA-D-----------------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCN 297 (515)
Q Consensus 237 v~~~~~~~-~~~~l~s~-~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~ 297 (515)
...+++.+ +|.++++- . ++.|..+|..+.+... +.........++++|++ +
T Consensus 128 p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~---------~~~~~~~p~gia~~~dg-~ 197 (322)
T 2fp8_A 128 LYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTL---------LLKELHVPGGAEVSADS-S 197 (322)
T ss_dssp EEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEE---------EEEEESCCCEEEECTTS-S
T ss_pred cceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEE---------eccCCccCcceEECCCC-C
Confidence 45677777 77666653 2 3667778876443211 01112334679999998 6
Q ss_pred EE-EEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-----------CeE
Q 010206 298 ML-AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-----------MTL 365 (515)
Q Consensus 298 ~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-----------~~i 365 (515)
.| ++-...+.|..|++..... .....+.. ..+ ...+++.++|++.++... +.|
T Consensus 198 ~lyv~d~~~~~I~~~~~~~~~~--~~~~~~~~------------~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v 262 (322)
T 2fp8_A 198 FVLVAEFLSHQIVKYWLEGPKK--GTAEVLVK------------IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKG 262 (322)
T ss_dssp EEEEEEGGGTEEEEEESSSTTT--TCEEEEEE------------CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEE
T ss_pred EEEEEeCCCCeEEEEECCCCcC--CccceEEe------------CCC-CCCeEECCCCCEEEEecCcccccccCCCccEE
Confidence 44 4445678999999875321 00111111 012 577899999987776422 456
Q ss_pred EEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCC
Q 010206 366 KLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 366 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
..+|.. ++.+..+....... ...+..+++ .+++++++....+.|..+++...
T Consensus 263 ~~~d~~--G~~~~~~~~~~g~~-----------~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 263 IKFDEF--GNILEVIPLPPPFA-----------GEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp EEECTT--SCEEEEEECCTTTT-----------TSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred EEECCC--CCEEEEEECCCCCc-----------cccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 666643 66666665433210 111235666 46676667667889999998643
No 244
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.59 E-value=4.7e-06 Score=77.67 Aligned_cols=275 Identities=8% Similarity=0.022 Sum_probs=136.9
Q ss_pred CcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCC-CCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCc
Q 010206 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAG-NGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGV 204 (515)
Q Consensus 126 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~ 204 (515)
+..+++++.++.|..+|..+++................ ...+ ......++..+ +.++.+
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~v------------~v~~~~ 112 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALL--------SGGVTVSGGHV------------YIGSEK 112 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCE--------EEEEEEETTEE------------EEEETT
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccc--------ccCceEeCCEE------------EEEcCC
Confidence 45788888899999999999987766554321100000 0000 01111223333 566677
Q ss_pred ccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccC-cccccc
Q 010206 205 SSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP-ANMEDL 282 (515)
Q Consensus 205 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~ 282 (515)
+.+..+| ..+. +....+. ........... .++ .++.+ .++.|..+|.++++.........+ ......
T Consensus 113 g~l~a~d--~~tG------~~~W~~~-~~~~~~~~p~~-~~~-~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~ 181 (376)
T 3q7m_A 113 AQVYALN--TSDG------TVAWQTK-VAGEALSRPVV-SDG-LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGE 181 (376)
T ss_dssp SEEEEEE--TTTC------CEEEEEE-CSSCCCSCCEE-ETT-EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCC
T ss_pred CEEEEEE--CCCC------CEEEEEe-CCCceEcCCEE-ECC-EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCC
Confidence 7888777 2221 1111111 11010011111 134 55555 789999999988875543210000 000000
Q ss_pred CCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCC-ccccccccccceeEEEEccCCCEEEEEc
Q 010206 283 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG-TRSFFTEIIASISDIKFARNGRHILSRD 361 (515)
Q Consensus 283 ~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~s~~ 361 (515)
...... + ..++.++.++.+..+|..+++...+... ....... ..........++ + .+..++.++
T Consensus 182 ----~~~~~~-~--~~v~~g~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~~~~~~~~~~p~----~--~~~~v~~~~ 246 (376)
T 3q7m_A 182 ----SAPTTA-F--GAAVVGGDNGRVSAVLMEQGQMIWQQRI--SQATGSTEIDRLSDVDTTPV----V--VNGVVFALA 246 (376)
T ss_dssp ----CCCEEE-T--TEEEECCTTTEEEEEETTTCCEEEEEEC--CC-----------CCCCCCE----E--ETTEEEEEC
T ss_pred ----CCcEEE-C--CEEEEEcCCCEEEEEECCCCcEEEEEec--ccCCCCcccccccccCCCcE----E--ECCEEEEEe
Confidence 111222 3 3677788899999999998876432110 0000000 000000000111 1 234555555
Q ss_pred -CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeec-
Q 010206 362 -YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE- 439 (515)
Q Consensus 362 -~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~- 439 (515)
++.+..+|..+ ++.+-...... ...+.. ++..|+.++.++.|..+|..+++.+ ....
T Consensus 247 ~~g~l~~~d~~t-G~~~w~~~~~~-----------------~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~-w~~~~ 305 (376)
T 3q7m_A 247 YNGNLTALDLRS-GQIMWKRELGS-----------------VNDFIV--DGNRIYLVDQNDRVMALTIDGGVTL-WTQSD 305 (376)
T ss_dssp TTSCEEEEETTT-CCEEEEECCCC-----------------EEEEEE--ETTEEEEEETTCCEEEEETTTCCEE-EEECT
T ss_pred cCcEEEEEECCC-CcEEeeccCCC-----------------CCCceE--ECCEEEEEcCCCeEEEEECCCCcEE-Eeecc
Confidence 48999999986 65544332111 112333 4667778888999999999988433 3332
Q ss_pred cCCCceeeEEECCCCCeeEeecCCCeEEEe
Q 010206 440 ASKNPMRRQVQTPSRPSRPLGSLSGVVRRV 469 (515)
Q Consensus 440 ~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~ 469 (515)
........... .+..|..++.+|.+..+
T Consensus 306 ~~~~~~~~~~~--~~~~l~v~~~~g~l~~~ 333 (376)
T 3q7m_A 306 LLHRLLTSPVL--YNGNLVVGDSEGYLHWI 333 (376)
T ss_dssp TTTSCCCCCEE--ETTEEEEECTTSEEEEE
T ss_pred cCCCcccCCEE--ECCEEEEEeCCCeEEEE
Confidence 11222223333 24577788888888773
No 245
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.59 E-value=1.8e-05 Score=68.44 Aligned_cols=212 Identities=8% Similarity=-0.007 Sum_probs=128.1
Q ss_pred ccccc--ceEEEEECCCCCeEEeecC--CCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccc
Q 010206 32 VQEVD--IISAIEFDKSGDHLATGDR--GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (515)
Q Consensus 32 ~~h~~--~v~~v~~s~~g~~lasg~~--dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (515)
+.|.. ...-++|+||+.+.++.+. ++.|.+.|+.+++.... ..+..+
T Consensus 15 ~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~---------------------i~l~~~-------- 65 (266)
T 2iwa_A 15 FPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENI---------------------HKMDDS-------- 65 (266)
T ss_dssp EECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEE---------------------EECCTT--------
T ss_pred EECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEE---------------------EecCCC--------
Confidence 34443 3578999999765555443 57999999998875311 011111
Q ss_pred cccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccc
Q 010206 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (515)
Q Consensus 108 ~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~ 187 (515)
.....+++ .. +..+++.-.++.+.++|..+.+........ .+. ...+++||+.+
T Consensus 66 -----~fgeGi~~--~g-~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~~----------------g~glt~Dg~~l- 119 (266)
T 2iwa_A 66 -----YFGEGLTL--LN-EKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKD----------------GWGLATDGKIL- 119 (266)
T ss_dssp -----CCEEEEEE--ET-TEEEEEETTCSEEEEEETTTTEEEEEEECC-SSS----------------CCEEEECSSSE-
T ss_pred -----cceEEEEE--eC-CEEEEEEecCCEEEEEECCCCcEEEEEECC-CCC----------------eEEEEECCCEE-
Confidence 11234555 32 334444556899999999998877665433 111 45677888877
Q ss_pred cccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeecc-CcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCC
Q 010206 188 RNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHA-HDYHINSISNNSDGETFISA-DDLRINLWNLEIS 265 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~ 265 (515)
+.+..++.+.+.| ..+.+. .........+ .-..++.+.|. ++..++.. .++.|.+.|+.++
T Consensus 120 -----------~vs~gs~~l~viD--~~t~~v---~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg 182 (266)
T 2iwa_A 120 -----------YGSDGTSILYEID--PHTFKL---IKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDG 182 (266)
T ss_dssp -----------EEECSSSEEEEEC--TTTCCE---EEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTC
T ss_pred -----------EEECCCCeEEEEE--CCCCcE---EEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCC
Confidence 5555678888877 222111 1111110011 11246778887 77666555 6899999999987
Q ss_pred CcccceecccCc--c--cc--ccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcc
Q 010206 266 NQSFNIVDVKPA--N--ME--DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 316 (515)
Q Consensus 266 ~~~~~~~~~~~~--~--~~--~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~ 316 (515)
+.... +++... . .. ........|+|+|++.++++++...+.+...++...
T Consensus 183 ~V~~~-I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 183 TLLGW-ILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp CEEEE-EECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred cEEEE-EECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 65432 222100 0 00 012457899999998677888888899988887654
No 246
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.58 E-value=1e-05 Score=69.88 Aligned_cols=194 Identities=11% Similarity=-0.007 Sum_probs=122.6
Q ss_pred CCeEEEEecCCCCEEEEe-C--CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEE
Q 010206 235 YHINSISNNSDGETFISA-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 311 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~w 311 (515)
.....+.|++++.++++. . ++.|+++|+.+++....+ .+..+ .....+++. +..+.++.-.++.+.++
T Consensus 21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i------~l~~~-~fgeGi~~~--g~~lyv~t~~~~~v~vi 91 (266)
T 2iwa_A 21 AFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIH------KMDDS-YFGEGLTLL--NEKLYQVVWLKNIGFIY 91 (266)
T ss_dssp CCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEE------ECCTT-CCEEEEEEE--TTEEEEEETTCSEEEEE
T ss_pred CCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEE------ecCCC-cceEEEEEe--CCEEEEEEecCCEEEEE
Confidence 346899999987666664 2 689999999988755332 11111 122355565 32566666678999999
Q ss_pred ecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccc
Q 010206 312 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKL 390 (515)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 390 (515)
|..+.+...+ +.... -....+++||+.++.++. +.|.++|..+ .+.+..+.......
T Consensus 92 D~~t~~v~~~----i~~g~--------------~~g~glt~Dg~~l~vs~gs~~l~viD~~t-~~v~~~I~Vg~~~~--- 149 (266)
T 2iwa_A 92 DRRTLSNIKN----FTHQM--------------KDGWGLATDGKILYGSDGTSILYEIDPHT-FKLIKKHNVKYNGH--- 149 (266)
T ss_dssp ETTTTEEEEE----EECCS--------------SSCCEEEECSSSEEEECSSSEEEEECTTT-CCEEEEEECEETTE---
T ss_pred ECCCCcEEEE----EECCC--------------CCeEEEEECCCEEEEECCCCeEEEEECCC-CcEEEEEEECCCCc---
Confidence 9998775432 22110 012335668887777655 8999999986 67666665432210
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccC-------------CCceeeEEECCCCCe-
Q 010206 391 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS-------------KNPMRRQVQTPSRPS- 456 (515)
Q Consensus 391 ~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~- 456 (515)
.+...+.+.|. +|+..+....++.|.+.|..+++ ....+... ....+.++++|+++.
T Consensus 150 -------p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~-V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~l 220 (266)
T 2iwa_A 150 -------RVIRLNELEYI-NGEVWANIWQTDCIARISAKDGT-LLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRI 220 (266)
T ss_dssp -------ECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCC-EEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEE
T ss_pred -------ccccceeEEEE-CCEEEEecCCCCeEEEEECCCCc-EEEEEECCCcccccccccccccCceEEEEEcCCCCEE
Confidence 01112367777 77666666678899999999884 33444321 134579999999864
Q ss_pred eEeecCCCeEEE
Q 010206 457 RPLGSLSGVVRR 468 (515)
Q Consensus 457 l~s~~~d~~v~l 468 (515)
++++.....+..
T Consensus 221 fVTgk~~~~v~~ 232 (266)
T 2iwa_A 221 FVTGKLWPKLFE 232 (266)
T ss_dssp EEEETTCSEEEE
T ss_pred EEECCCCCeEEE
Confidence 566656666665
No 247
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.55 E-value=5.1e-05 Score=76.13 Aligned_cols=177 Identities=14% Similarity=0.154 Sum_probs=100.1
Q ss_pred EEEecCCCCEEEEe-CCC-------------------cEEEEeCCCCCcccceecccCccccccC-------CceEEEEE
Q 010206 239 SISNNSDGETFISA-DDL-------------------RINLWNLEISNQSFNIVDVKPANMEDLT-------EVITSAEF 291 (515)
Q Consensus 239 ~~~~~~~~~~l~s~-~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------~~i~~i~~ 291 (515)
.++++++...+..+ .++ .|..+|.++++...+.. ...|. .++....+
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~------~~~~~~wd~~~~~~~~~~d~ 307 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQ------VTPGDSWDFTATQQITLAEL 307 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE------SSTTCCSCCCCCSCEEEEEE
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEee------cCCCccccccCCCCcEEEEe
Confidence 46788887787776 554 49999999887654321 11121 23333333
Q ss_pred ecCCCc---EEEEEecCCeEEEEecCcccccccccce---eeeccC--CCc-----cc--------cccccc--cceeEE
Q 010206 292 HPTHCN---MLAYSSSKGSIRLIDMRQSALCDTHSKL---FEEQEA--PGT-----RS--------FFTEII--ASISDI 348 (515)
Q Consensus 292 ~p~~~~---~l~~~~~dg~i~~wd~~~~~~~~~~~~~---~~~~~~--~~~-----~~--------~~~~~~--~~i~~~ 348 (515)
..++ + .++.++.+|.+.++|.++++.+...... +...-. ... .. .+.+.. ..-..+
T Consensus 308 ~~~G-~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~ 386 (668)
T 1kv9_A 308 NIDG-KPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSM 386 (668)
T ss_dssp EETT-EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCC
T ss_pred ccCC-cEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcc
Confidence 3455 3 6888999999999999999875221000 000000 000 00 000000 001225
Q ss_pred EEccCCCEEEEE------------------------------------cC-CeEEEEEeeCCCCCeeeEeeecccccccc
Q 010206 349 KFARNGRHILSR------------------------------------DY-MTLKLWDINMDSGPVATFQVHEHLRPKLC 391 (515)
Q Consensus 349 ~~s~~~~~l~s~------------------------------------~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 391 (515)
+++|+...++.. .. |.|..||+.+ ++.+-........
T Consensus 387 a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t-G~~~W~~~~~~~~----- 460 (668)
T 1kv9_A 387 SFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK-QKAAWKVPYPTHW----- 460 (668)
T ss_dssp EEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT-TEEEEEEEESSSC-----
T ss_pred eECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCC-CcEEEEccCCCCC-----
Confidence 677766555431 12 6788888876 6555444332211
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeecc
Q 010206 392 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA 440 (515)
Q Consensus 392 ~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~ 440 (515)
....+...+.+++.++.||.|+.||.++++ ++..++.
T Consensus 461 -----------~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~-~l~~~~~ 497 (668)
T 1kv9_A 461 -----------NGGTLSTAGNLVFQGTAAGQMHAYSADKGE-ALWQFEA 497 (668)
T ss_dssp -----------CCCEEEETTTEEEEECTTSEEEEEETTTCC-EEEEEEC
T ss_pred -----------cCceeEeCCCEEEEECCcccchhhhhhcCh-hheEecC
Confidence 133455578889999999999999999884 4444443
No 248
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.53 E-value=1.2e-05 Score=68.50 Aligned_cols=184 Identities=13% Similarity=0.056 Sum_probs=111.7
Q ss_pred CCeEEEEecCCCCEEEEe-CCC--cEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEE
Q 010206 235 YHINSISNNSDGETFISA-DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 311 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~w 311 (515)
.....+.|+ ++.++.+. .+| .|+.+|+++++...++ .+.. ...--.+++. +.++.+..-.++.+.+|
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~------~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~ 112 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQI------ELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVW 112 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEE------ECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEE
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEE------ecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEE
Confidence 334789998 66655554 444 9999999988755432 1111 1111234444 32566666668999999
Q ss_pred ecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccc
Q 010206 312 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKL 390 (515)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 390 (515)
|..+.+...+ +... -....++++++.|+..+. +.|.++|..+ .+.+.++.......
T Consensus 113 D~~t~~~~~t----i~~~---------------~eG~glt~dg~~L~~SdGs~~i~~iDp~T-~~v~~~I~V~~~g~--- 169 (262)
T 3nol_A 113 NIRNLRQVRS----FNYD---------------GEGWGLTHNDQYLIMSDGTPVLRFLDPES-LTPVRTITVTAHGE--- 169 (262)
T ss_dssp ETTTCCEEEE----EECS---------------SCCCCEEECSSCEEECCSSSEEEEECTTT-CSEEEEEECEETTE---
T ss_pred ECccCcEEEE----EECC---------------CCceEEecCCCEEEEECCCCeEEEEcCCC-CeEEEEEEeccCCc---
Confidence 9998876432 2211 122334467777777654 8899999986 67777766532110
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccC------------CCceeeEEECCCCCeeE
Q 010206 391 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS------------KNPMRRQVQTPSRPSRP 458 (515)
Q Consensus 391 ~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~ 458 (515)
.+..+..+.|. +|+..+..-.++.|.+.|.++++ ....+... .+-.+.++++|+++.|.
T Consensus 170 -------~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~-V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lf 240 (262)
T 3nol_A 170 -------ELPELNELEWV-DGEIFANVWQTNKIVRIDPETGK-VTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLF 240 (262)
T ss_dssp -------ECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCB-EEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEE
T ss_pred -------cccccceeEEE-CCEEEEEEccCCeEEEEECCCCc-EEEEEECCcCccccccccCcCCceEEEEEcCCCCEEE
Confidence 01112246676 77766666578899999999884 33333321 23457899999876554
Q ss_pred ee
Q 010206 459 LG 460 (515)
Q Consensus 459 s~ 460 (515)
..
T Consensus 241 VT 242 (262)
T 3nol_A 241 VT 242 (262)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 249
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.49 E-value=3.4e-05 Score=65.83 Aligned_cols=194 Identities=12% Similarity=0.161 Sum_probs=113.4
Q ss_pred cccccc--eEEEEECCCCCeEEeecCCC--eEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccc
Q 010206 32 VQEVDI--ISAIEFDKSGDHLATGDRGG--RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (515)
Q Consensus 32 ~~h~~~--v~~v~~s~~g~~lasg~~dg--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (515)
..|... ...+.|+ ++.+..+.+.+| .|+++|+.+++.. ....-.
T Consensus 37 ~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~-----------------------~~~~l~-------- 84 (262)
T 3nol_A 37 YPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTL-----------------------QQIELG-------- 84 (262)
T ss_dssp EECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEE-----------------------EEEECC--------
T ss_pred ecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEE-----------------------EEEecC--------
Confidence 345433 4788998 677777776665 8999999988753 111110
Q ss_pred ccccccee--EEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCc
Q 010206 108 SLEIEEKI--NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (515)
Q Consensus 108 ~~~~~~~v--~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 185 (515)
... ..+.. .. +..+.+.-.++.+.+||..+.+.......... ...+.+|++.
T Consensus 85 -----~~~FgeGit~--~g-~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~e------------------G~glt~dg~~ 138 (262)
T 3nol_A 85 -----KRYFGEGISD--WK-DKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGE------------------GWGLTHNDQY 138 (262)
T ss_dssp -----TTCCEEEEEE--ET-TEEEEEESSSSEEEEEETTTCCEEEEEECSSC------------------CCCEEECSSC
T ss_pred -----CccceeEEEE--eC-CEEEEEEeeCCEEEEEECccCcEEEEEECCCC------------------ceEEecCCCE
Confidence 112 22444 22 23444445689999999999988777665421 4466677877
Q ss_pred cccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCc-CCeEEEEecCCCCEEEEe-CCCcEEEEeCC
Q 010206 186 GERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHD-YHINSISNNSDGETFISA-DDLRINLWNLE 263 (515)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~ 263 (515)
| +....++.|.++| ..+.+. .........+.. ..++.+.|. +|+.++.. .+..|.+.|.+
T Consensus 139 L------------~~SdGs~~i~~iD--p~T~~v---~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~ 200 (262)
T 3nol_A 139 L------------IMSDGTPVLRFLD--PESLTP---VRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPE 200 (262)
T ss_dssp E------------EECCSSSEEEEEC--TTTCSE---EEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTT
T ss_pred E------------EEECCCCeEEEEc--CCCCeE---EEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECC
Confidence 6 5555577888877 222111 111111111111 345567776 77766666 68899999999
Q ss_pred CCCcccceecccC---cc--ccccCCceEEEEEecCCCcEEEEE
Q 010206 264 ISNQSFNIVDVKP---AN--MEDLTEVITSAEFHPTHCNMLAYS 302 (515)
Q Consensus 264 ~~~~~~~~~~~~~---~~--~~~~~~~i~~i~~~p~~~~~l~~~ 302 (515)
+++... .+++.. .. ........+.|+|+|++.+++++|
T Consensus 201 tG~V~~-~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 201 TGKVTG-IIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp TCBEEE-EEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred CCcEEE-EEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 876443 332221 00 011134578999999984455544
No 250
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.48 E-value=0.00043 Score=62.16 Aligned_cols=193 Identities=12% Similarity=0.059 Sum_probs=104.8
Q ss_pred CeEEEEecCCCCEEEEe-CC--CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEe
Q 010206 236 HINSISNNSDGETFISA-DD--LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 312 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd 312 (515)
.+..++++++++++++. .. ..|..+|..+++.. .+... . .......++..+++ ..+++-..++.|..+|
T Consensus 73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~-~~~~~-----~-~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d 144 (306)
T 2p4o_A 73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE-TLLTL-----P-DAIFLNGITPLSDT-QYLTADSYRGAIWLID 144 (306)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE-EEEEC-----T-TCSCEEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE-EEEeC-----C-CccccCcccccCCC-cEEEEECCCCeEEEEe
Confidence 46788999999877665 32 24666776654422 11111 1 11223455555554 5555544688899998
Q ss_pred cCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--CeEEEEEeeCCCCC--eeeEeeeccccc
Q 010206 313 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGP--VATFQVHEHLRP 388 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~~~~~--~~~~~~~~~~~~ 388 (515)
...+.... ......-.. ......-.....+ +|+++.|+.++. +.|..+++...+.. ...+.... .
T Consensus 145 ~~~~~~~v---~~~~~~~~~---~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~-~-- 213 (306)
T 2p4o_A 145 VVQPSGSI---WLEHPMLAR---SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQT-N-- 213 (306)
T ss_dssp TTTTEEEE---EEECGGGSC---SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESC-C--
T ss_pred CCCCcEeE---EEECCcccc---ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccC-C--
Confidence 76532100 000000000 0000000123445 788888777653 89999998742221 11111100 0
Q ss_pred cccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc-eeeeccCCCceeeEEEC---CCCCeeEeec
Q 010206 389 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE-STTLEASKNPMRRQVQT---PSRPSRPLGS 461 (515)
Q Consensus 389 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~-~~~~~~~~~~v~~~~~~---~~~~~l~s~~ 461 (515)
...++++++|+++++....+.|.+++.. ++.. ...+.......+++++. |+++.|...+
T Consensus 214 -------------P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 214 -------------IDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp -------------CSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred -------------CCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEEC
Confidence 1278999999988877778899999975 4221 12233333557889998 7877665544
No 251
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.47 E-value=2.5e-05 Score=66.66 Aligned_cols=183 Identities=11% Similarity=-0.024 Sum_probs=113.1
Q ss_pred CCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEec
Q 010206 235 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 313 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~ 313 (515)
.....+.|+. +.++.+. .+|.|+.+|+++++...++ +.+ ...-..+++. +.++.+....++.+.+||.
T Consensus 55 ~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~------~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~ 123 (268)
T 3nok_A 55 AFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME--RLG------NIFAEGLASD--GERLYQLTWTEGLLFTWSG 123 (268)
T ss_dssp CCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE--ECT------TCCEEEEEEC--SSCEEEEESSSCEEEEEET
T ss_pred cccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE--CCC------CcceeEEEEe--CCEEEEEEccCCEEEEEEC
Confidence 4457888874 4455554 7888999999988765433 211 1111335554 3356666677999999999
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccc
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD 392 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 392 (515)
.+.+...+ +... ..-..+ ++|++.|+.++. +.|.++|..+ .+.+.++.......
T Consensus 124 ~Tl~~~~t----i~~~-------------~eGwGL--t~Dg~~L~vSdGs~~l~~iDp~T-~~v~~~I~V~~~g~----- 178 (268)
T 3nok_A 124 MPPQRERT----TRYS-------------GEGWGL--CYWNGKLVRSDGGTMLTFHEPDG-FALVGAVQVKLRGQ----- 178 (268)
T ss_dssp TTTEEEEE----EECS-------------SCCCCE--EEETTEEEEECSSSEEEEECTTT-CCEEEEEECEETTE-----
T ss_pred CcCcEEEE----EeCC-------------CceeEE--ecCCCEEEEECCCCEEEEEcCCC-CeEEEEEEeCCCCc-----
Confidence 99876432 2211 111233 356788877664 8999999986 77777766543221
Q ss_pred cccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeecc-------------CCCceeeEEECCCCCee-E
Q 010206 393 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA-------------SKNPMRRQVQTPSRPSR-P 458 (515)
Q Consensus 393 ~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l-~ 458 (515)
.+..+..+.|. +|+..+..-.++.|.+.|.++++ ....+.. ..+-.+.+++.|+++.| +
T Consensus 179 -----~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~-V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfV 251 (268)
T 3nok_A 179 -----PVELINELECA-NGVIYANIWHSSDVLEIDPATGT-VVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFM 251 (268)
T ss_dssp -----ECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCB-EEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEE
T ss_pred -----ccccccccEEe-CCEEEEEECCCCeEEEEeCCCCc-EEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEE
Confidence 11112356776 77666655578899999999884 3333321 12356889999976544 4
Q ss_pred ee
Q 010206 459 LG 460 (515)
Q Consensus 459 s~ 460 (515)
+|
T Consensus 252 TG 253 (268)
T 3nok_A 252 TG 253 (268)
T ss_dssp EE
T ss_pred eC
Confidence 43
No 252
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.39 E-value=0.00042 Score=59.49 Aligned_cols=176 Identities=11% Similarity=0.126 Sum_probs=95.7
Q ss_pred CeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc--ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEe
Q 010206 236 HINSISNNSDGETFISA-DDLRINLWNLEISNQSF--NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 312 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd 312 (515)
..-.+++.+++.++++. .++.+.++++....... ....+. ......+...-.++|+|.+ ..|.++.......+|.
T Consensus 71 D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~-~~~~~~N~g~EGLA~d~~~-~~L~va~E~~p~~i~~ 148 (255)
T 3qqz_A 71 DLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIP-LQESPTNCGFEGLAYSRQD-HTFWFFKEKNPIEVYK 148 (255)
T ss_dssp SEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECC-CSSCCCSSCCEEEEEETTT-TEEEEEEESSSEEEEE
T ss_pred ChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccc-cccccccCCcceEEEeCCC-CEEEEEECcCCceEEE
Confidence 34567777888776766 67888888876554311 111110 0011234557899999998 5566566655556666
Q ss_pred cCcccccccccceeeeccCCCccccccccccceeEEEEccCCC-EEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccc
Q 010206 313 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKL 390 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 390 (515)
+. +................ -..+...+.+++++|... +++..+. ..|.++|.. ++.+..+....+.-...
T Consensus 149 ~~-g~~~~~~l~i~~~~~~~-----~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~--g~~~~~~~L~~g~~~l~ 220 (255)
T 3qqz_A 149 VN-GLLSSNELHISKDKALQ-----RQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV--GEVIGEMSLTKGSRGLS 220 (255)
T ss_dssp EE-STTCSSCCEEEECHHHH-----HTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT--CCEEEEEECSTTGGGCS
T ss_pred Ec-ccccCCceeeecchhhc-----cccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC--CCEEEEEEcCCccCCcc
Confidence 54 21110111111110000 000123578999999544 4444444 889999876 66666665443210000
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEec
Q 010206 391 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 428 (515)
Q Consensus 391 ~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~ 428 (515)
..+..-..++|.++|++.++ ++.+.++.|.-
T Consensus 221 ------~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 221 ------HNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp ------SCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred ------cccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 01111237999999985555 67777777654
No 253
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.39 E-value=0.00012 Score=61.81 Aligned_cols=192 Identities=9% Similarity=0.044 Sum_probs=113.7
Q ss_pred eeeeeccCcCCeEEEEecCCCCEEEEe-C--CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEE
Q 010206 226 RRIYAHAHDYHINSISNNSDGETFISA-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS 302 (515)
Q Consensus 226 ~~~~~~~~~~~v~~~~~~~~~~~l~s~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~ 302 (515)
.+.+..........+.|++ +.++.+. . ...|+.+|+.+++...++ .+..+ ..--.+++. +.++....
T Consensus 12 ~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~------~l~~~-~fgeGi~~~--~~~ly~lt 81 (243)
T 3mbr_X 12 VKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA------EVPPP-YFGAGIVAW--RDRLIQLT 81 (243)
T ss_dssp EEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE------ECCTT-CCEEEEEEE--TTEEEEEE
T ss_pred EEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE------eCCCC-cceeEEEEe--CCEEEEEE
Confidence 3444233345567899987 4555553 3 469999999988755332 11111 111334444 32566666
Q ss_pred ecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEe
Q 010206 303 SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQ 381 (515)
Q Consensus 303 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~ 381 (515)
-.++.+.+||..+.+...+ +... . ....+.+++..|+.++. +.|.++|..+ .+.+.++.
T Consensus 82 w~~~~v~v~D~~tl~~~~t----i~~~-------------~--~Gwglt~dg~~L~vSdgs~~l~~iDp~t-~~~~~~I~ 141 (243)
T 3mbr_X 82 WRNHEGFVYDLATLTPRAR----FRYP-------------G--EGWALTSDDSHLYMSDGTAVIRKLDPDT-LQQVGSIK 141 (243)
T ss_dssp SSSSEEEEEETTTTEEEEE----EECS-------------S--CCCEEEECSSCEEEECSSSEEEEECTTT-CCEEEEEE
T ss_pred eeCCEEEEEECCcCcEEEE----EeCC-------------C--CceEEeeCCCEEEEECCCCeEEEEeCCC-CeEEEEEE
Confidence 7799999999998876432 2211 1 12233456776666554 8999999986 77777766
Q ss_pred eeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeecc-------------CCCceeeE
Q 010206 382 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA-------------SKNPMRRQ 448 (515)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~-------------~~~~v~~~ 448 (515)
...... .+..+..+.+. +|+..+..-.+..|.+.|.++++ ....+.. ..+-.+.+
T Consensus 142 V~~~g~----------~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~-V~~~idl~~l~~~~~~~~~~~~~vlNGI 209 (243)
T 3mbr_X 142 VTAGGR----------PLDNLNELEWV-NGELLANVWLTSRIARIDPASGK-VVAWIDLQALVPDADALTDSTNDVLNGI 209 (243)
T ss_dssp CEETTE----------ECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCB-EEEEEECGGGSTTTTSCCCTTSSCEEEE
T ss_pred EccCCc----------ccccceeeEEe-CCEEEEEECCCCeEEEEECCCCC-EEEEEECCcCccccccccCCcCCceEEE
Confidence 543211 11112355655 67666555567899999999884 3333321 12345789
Q ss_pred EECCCCCeeEe
Q 010206 449 VQTPSRPSRPL 459 (515)
Q Consensus 449 ~~~~~~~~l~s 459 (515)
++.|+++.|..
T Consensus 210 A~d~~~~~lfV 220 (243)
T 3mbr_X 210 AFDAEHDRLFV 220 (243)
T ss_dssp EEETTTTEEEE
T ss_pred EEcCCCCEEEE
Confidence 99997655433
No 254
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.35 E-value=0.0014 Score=58.82 Aligned_cols=104 Identities=11% Similarity=0.082 Sum_probs=59.5
Q ss_pred ceEEEEEecCCCcEEEEEecCCeEEEEecCc-ccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-
Q 010206 285 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY- 362 (515)
Q Consensus 285 ~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~- 362 (515)
....+ +|++..++++-...+.|..|++.. +... ....+.. ......++++++|+++++...
T Consensus 170 ~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~--~~~~~~~-------------~~~P~gi~vd~dG~l~va~~~~ 232 (306)
T 2p4o_A 170 AANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPG--EPEIFVE-------------QTNIDDFAFDVEGNLYGATHIY 232 (306)
T ss_dssp SEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBC--CCEEEEE-------------SCCCSSEEEBTTCCEEEECBTT
T ss_pred cCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCC--ccEEEec-------------cCCCCCeEECCCCCEEEEeCCC
Confidence 34556 788734555556678999999875 3221 0111110 023567899999987666544
Q ss_pred CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEc---CCCCEEEEecCC
Q 010206 363 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS---GDGGRVATGSYS 420 (515)
Q Consensus 363 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~s~s~d 420 (515)
+.|.++|.. ++.......... ....++++|. |+++.|+..+..
T Consensus 233 ~~V~~~~~~--G~~~~~~~~~~~-------------~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 233 NSVVRIAPD--RSTTIIAQAEQG-------------VIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp CCEEEECTT--CCEEEEECGGGT-------------CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CeEEEECCC--CCEEEEeecccc-------------cCCceEEEEecccCCCCEEEEECCC
Confidence 889998864 433211111111 1113489998 887777655543
No 255
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.29 E-value=0.00043 Score=62.71 Aligned_cols=194 Identities=11% Similarity=0.024 Sum_probs=110.6
Q ss_pred CCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCc-------------cccccCCceEEEEEec-CCCcEE
Q 010206 235 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA-------------NMEDLTEVITSAEFHP-THCNML 299 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~-------------~~~~~~~~i~~i~~~p-~~~~~l 299 (515)
....+++|+++++++.++ .++.|..||....... .+. .... ........+..+++.+ ++ + |
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~-~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~-l 94 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFA-YASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-Q-L 94 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEE-ESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-E-E
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEe-cccccccccccccccchhccccCCCCceEEEcCCCC-c-E
Confidence 456688999999866676 7899999988754321 110 0000 0001124578999998 65 4 4
Q ss_pred EEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEcc-CCCEEEEEcC----------------
Q 010206 300 AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY---------------- 362 (515)
Q Consensus 300 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~---------------- 362 (515)
+.+...+.|..+|..++.. ..+..... .........+++.+ +|++.++-..
T Consensus 95 ~v~d~~~~i~~~d~~~g~~-----~~~~~~~~-------~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~ 162 (322)
T 2fp8_A 95 YIVDCYYHLSVVGSEGGHA-----TQLATSVD-------GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSD 162 (322)
T ss_dssp EEEETTTEEEEECTTCEEC-----EEEESEET-------TEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTC
T ss_pred EEEECCCCEEEEeCCCCEE-----EEecccCC-------CCcccccceEEEecCCCEEEEECCcccccccccceehcccC
Confidence 4455556688888775532 11110000 00012467899999 9987776321
Q ss_pred --CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEe-cCCCcEEEEecCCCCc-ceeee
Q 010206 363 --MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSA-ESTTL 438 (515)
Q Consensus 363 --~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-s~dg~i~iw~~~~~~~-~~~~~ 438 (515)
+.|..||... ++ +..+...... ...++++|+|++|+.+ +..+.|..|++..... ....+
T Consensus 163 ~~g~v~~~d~~~-~~-~~~~~~~~~~---------------p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~ 225 (322)
T 2fp8_A 163 KTGRLIKYDPST-KE-TTLLLKELHV---------------PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVL 225 (322)
T ss_dssp CCEEEEEEETTT-TE-EEEEEEEESC---------------CCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEE
T ss_pred CCceEEEEeCCC-CE-EEEeccCCcc---------------CcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceE
Confidence 5677777653 22 2222111111 1278999999865544 6678999999875311 11111
Q ss_pred ccCCCceeeEEECCCCCeeEeecC
Q 010206 439 EASKNPMRRQVQTPSRPSRPLGSL 462 (515)
Q Consensus 439 ~~~~~~v~~~~~~~~~~~l~s~~~ 462 (515)
..... ...+++.++|.+.++...
T Consensus 226 ~~~~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 226 VKIPN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp EECSS-EEEEEECTTSCEEEEEEE
T ss_pred EeCCC-CCCeEECCCCCEEEEecC
Confidence 11112 667899999987666543
No 256
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.25 E-value=0.0003 Score=69.01 Aligned_cols=29 Identities=3% Similarity=0.016 Sum_probs=23.8
Q ss_pred CcEEEeeeCCCeEEEEEccCCeeEEEeec
Q 010206 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDW 154 (515)
Q Consensus 126 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 154 (515)
+..+++++.|+.|..+|..+++.......
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~ 143 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEV 143 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecC
Confidence 34788888899999999999998776554
No 257
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.25 E-value=0.00012 Score=62.46 Aligned_cols=190 Identities=9% Similarity=0.098 Sum_probs=113.2
Q ss_pred eEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEE
Q 010206 38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117 (515)
Q Consensus 38 v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~ 117 (515)
...+.|+ ++.+..+.+.+|.|+++|+.+++..... +... .--..
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~----------------------l~~~-------------~FgeG 100 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME----------------------RLGN-------------IFAEG 100 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE----------------------ECTT-------------CCEEE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE----------------------CCCC-------------cceeE
Confidence 4678887 4667777788889999999988754110 1111 01123
Q ss_pred EEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCC
Q 010206 118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS 197 (515)
Q Consensus 118 l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 197 (515)
+++ .. +..+.+.-.++.+.+||..+.+.......... ...+.+|++.|
T Consensus 101 it~--~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~e------------------GwGLt~Dg~~L----------- 148 (268)
T 3nok_A 101 LAS--DG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYSGE------------------GWGLCYWNGKL----------- 148 (268)
T ss_dssp EEE--CS-SCEEEEESSSCEEEEEETTTTEEEEEEECSSC------------------CCCEEEETTEE-----------
T ss_pred EEE--eC-CEEEEEEccCCEEEEEECCcCcEEEEEeCCCc------------------eeEEecCCCEE-----------
Confidence 444 32 34455556789999999999988777665321 34556778877
Q ss_pred CCCCCCcccEEeeeeeecccccccccceeeeeecc-CcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceeccc
Q 010206 198 SFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHA-HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 275 (515)
Q Consensus 198 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~ 275 (515)
+....++.|.++| ..+.+. .........+ .-..++.+.|. +|+.++.. .+..|.+.|.++++.. ..+++.
T Consensus 149 -~vSdGs~~l~~iD--p~T~~v---~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~-~~Idl~ 220 (268)
T 3nok_A 149 -VRSDGGTMLTFHE--PDGFAL---VGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVV-GVIDAS 220 (268)
T ss_dssp -EEECSSSEEEEEC--TTTCCE---EEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEE-EEEECH
T ss_pred -EEECCCCEEEEEc--CCCCeE---EEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEE-EEEECC
Confidence 5556678888877 222211 1111110011 11245677776 77666666 6889999999887643 333222
Q ss_pred C---cc---ccccCCceEEEEEecCCCcEEEEEe
Q 010206 276 P---AN---MEDLTEVITSAEFHPTHCNMLAYSS 303 (515)
Q Consensus 276 ~---~~---~~~~~~~i~~i~~~p~~~~~l~~~~ 303 (515)
. .. ...-....+.|+++|++.+++++|-
T Consensus 221 ~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 221 ALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp HHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 1 00 1112346789999998756666553
No 258
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.25 E-value=0.00088 Score=58.70 Aligned_cols=219 Identities=7% Similarity=-0.037 Sum_probs=122.4
Q ss_pred CCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEe
Q 010206 235 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 312 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd 312 (515)
..+..++|++++..|..+ ..+.|..+++...... .+ ..........++++|++..++++-...+.|.+++
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-~~-------~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~ 107 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT-TI-------IRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAK 107 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-EE-------ECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE-EE-------EECCCCCccEEEEEecCCeEEEEECCCCEEEEEE
Confidence 356789999976666655 5889999998754321 11 1112246789999997535566656678999999
Q ss_pred cCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc----CCeEEEEEeeCCCCCeeeEeeeccccc
Q 010206 313 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----YMTLKLWDINMDSGPVATFQVHEHLRP 388 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~ 388 (515)
+..... ..+... .......++++|++..|+.++ .+.|..+++. +.....+.... .
T Consensus 108 ~~g~~~-----~~~~~~-----------~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d--g~~~~~~~~~~-~-- 166 (267)
T 1npe_A 108 MDGTQR-----RVLFDT-----------GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD--GTNRRILAQDN-L-- 166 (267)
T ss_dssp TTSCSC-----EEEECS-----------SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT--SCCCEEEECTT-C--
T ss_pred cCCCCE-----EEEEEC-----------CCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC--CCCcEEEEECC-C--
Confidence 864321 111100 012467899999766555443 2578777775 33333332110 0
Q ss_pred cccccccCCCccceeeEEEcCCCCEEE-EecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEE
Q 010206 389 KLCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVR 467 (515)
Q Consensus 389 ~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~ 467 (515)
..-..++++++++.|+ +-...+.|.++++... .....+..-.. ...++.. .+..+++....+.|.
T Consensus 167 -----------~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~-~~~~~~~~~~~-P~gi~~d-~~~lyva~~~~~~v~ 232 (267)
T 1npe_A 167 -----------GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP-GRRKVLEGLQY-PFAVTSY-GKNLYYTDWKTNSVI 232 (267)
T ss_dssp -----------SCEEEEEEETTTTEEEEEETTTTEEEEEETTEE-EEEEEEECCCS-EEEEEEE-TTEEEEEETTTTEEE
T ss_pred -----------CCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC-ceEEEecCCCC-ceEEEEe-CCEEEEEECCCCeEE
Confidence 0123799999877655 5556789999998743 22223332222 3456554 344444444556776
Q ss_pred EecC--CCCCccccCCccccccCCeeEEEEcCCCC
Q 010206 468 RVKG--ADNSALDANGNAFDFSMKLLHLAWHPSEN 500 (515)
Q Consensus 468 l~~~--~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 500 (515)
.++. .+... .+.. +.......+++.|++.
T Consensus 233 ~~d~~~g~~~~-~i~~---g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 233 AMDLAISKEMD-TFHP---HKQTRLYGITIALSQC 263 (267)
T ss_dssp EEETTTTEEEE-EECC---SSCCCCCCEEEECSCC
T ss_pred EEeCCCCCceE-EEcc---ccccccceeeecCccC
Confidence 6332 11110 1111 1112356777777764
No 259
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.23 E-value=8.8e-05 Score=74.54 Aligned_cols=59 Identities=10% Similarity=-0.014 Sum_probs=39.0
Q ss_pred eEEEcCCCCEEEEecCC-----------CcEEEEecCCCCcce-eeeccCCCceeeEEECCCCCeeEeecC
Q 010206 404 ECCLSGDGGRVATGSYS-----------NLFRVFGCSEGSAES-TTLEASKNPMRRQVQTPSRPSRPLGSL 462 (515)
Q Consensus 404 ~~~~s~~~~~l~s~s~d-----------g~i~iw~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~ 462 (515)
+++..|++++++.|+.+ ..+.+||..+..... ..+...........+.|+++.++.|+.
T Consensus 460 ~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 460 TSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp EEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 55677899999999854 468999998754322 112222222234556799999999985
No 260
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.20 E-value=0.00035 Score=59.07 Aligned_cols=184 Identities=9% Similarity=0.079 Sum_probs=108.0
Q ss_pred CceEEEEEecCCCcEEEEEecC--CeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc
Q 010206 284 EVITSAEFHPTHCNMLAYSSSK--GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD 361 (515)
Q Consensus 284 ~~i~~i~~~p~~~~~l~~~~~d--g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~ 361 (515)
.....+.|++ + .++.+.+.+ ..|+.+|+.+++...+ .... .........+++..|+...
T Consensus 21 ~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~tgkv~~~----~~l~-------------~~~fgeGi~~~~~~ly~lt 81 (243)
T 3mbr_X 21 AFTEGLFYLR-G-HLYESTGETGRSSVRKVDLETGRILQR----AEVP-------------PPYFGAGIVAWRDRLIQLT 81 (243)
T ss_dssp CCEEEEEEET-T-EEEEEECCTTSCEEEEEETTTCCEEEE----EECC-------------TTCCEEEEEEETTEEEEEE
T ss_pred cccccEEEEC-C-EEEEECCCCCCceEEEEECCCCCEEEE----EeCC-------------CCcceeEEEEeCCEEEEEE
Confidence 4467899987 4 677777775 4899999999876432 1111 1122222333455666654
Q ss_pred --CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeec
Q 010206 362 --YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE 439 (515)
Q Consensus 362 --~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 439 (515)
++.+.+||..+ .+.+.++...... +.++ +|++.|+.+..++.|.++|.++.+ ...+++
T Consensus 82 w~~~~v~v~D~~t-l~~~~ti~~~~~G----------------wglt--~dg~~L~vSdgs~~l~~iDp~t~~-~~~~I~ 141 (243)
T 3mbr_X 82 WRNHEGFVYDLAT-LTPRARFRYPGEG----------------WALT--SDDSHLYMSDGTAVIRKLDPDTLQ-QVGSIK 141 (243)
T ss_dssp SSSSEEEEEETTT-TEEEEEEECSSCC----------------CEEE--ECSSCEEEECSSSEEEEECTTTCC-EEEEEE
T ss_pred eeCCEEEEEECCc-CcEEEEEeCCCCc----------------eEEe--eCCCEEEEECCCCeEEEEeCCCCe-EEEEEE
Confidence 49999999987 7788877654321 1344 566666666668899999999874 334443
Q ss_pred c--CCC---ceeeEEECCCCCeeEeecCCCeEEEec--CCCCCc-cc---cCCcc----ccccCCeeEEEEcCCCCEEEE
Q 010206 440 A--SKN---PMRRQVQTPSRPSRPLGSLSGVVRRVK--GADNSA-LD---ANGNA----FDFSMKLLHLAWHPSENSIAC 504 (515)
Q Consensus 440 ~--~~~---~v~~~~~~~~~~~l~s~~~d~~v~l~~--~~~~~~-~~---~~~~~----~~~~~~i~~~~~s~~~~~la~ 504 (515)
. +.. .++.+.+. +|+..+....+..|.+++ ..+... .. +.... .......+.+||+|+++.|.+
T Consensus 142 V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfV 220 (243)
T 3mbr_X 142 VTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFV 220 (243)
T ss_dssp CEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEE
T ss_pred EccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEE
Confidence 3 222 23444544 666665554455555521 111110 00 00000 012345699999999998888
Q ss_pred EcC
Q 010206 505 AAS 507 (515)
Q Consensus 505 ~~~ 507 (515)
.+.
T Consensus 221 TGK 223 (243)
T 3mbr_X 221 TGK 223 (243)
T ss_dssp EET
T ss_pred ECC
Confidence 774
No 261
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.20 E-value=0.0038 Score=57.91 Aligned_cols=171 Identities=9% Similarity=0.045 Sum_probs=95.0
Q ss_pred EEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC-CeEEEEecC
Q 010206 238 NSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLIDMR 314 (515)
Q Consensus 238 ~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-g~i~~wd~~ 314 (515)
..+++++.+..|..+ ..+.|.+.++...... .+ +.........+++.|.+..++.+-... +.|..+++.
T Consensus 162 ~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~-~l-------~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d 233 (386)
T 3v65_B 162 GGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK-VL-------LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD 233 (386)
T ss_dssp CCEEEETTTTEEEEEETTTTEEEECBTTSCSCE-EE-------ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred cEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE-Ee-------ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC
Confidence 456777655554444 5677888887633211 11 112234578999999763444444444 678888875
Q ss_pred cccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--CeEEEEEeeCCCCCeeeEeeeccccccccc
Q 010206 315 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCD 392 (515)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 392 (515)
.... ..+-. ........++++|++..|+.++. +.|..+|+. +.....+......
T Consensus 234 G~~~-----~~~~~-----------~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~------ 289 (386)
T 3v65_B 234 GSGR-----RIIAD-----------THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD--GSHRKAVISQGLP------ 289 (386)
T ss_dssp SCSC-----EEEEC-----------SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT--SCSCEEEECSSCS------
T ss_pred CCCc-----EEEEE-----------CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC--CCeeEEEEECCCC------
Confidence 4321 11110 01134688999987777777653 888888876 3332333211100
Q ss_pred cccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEE
Q 010206 393 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ 450 (515)
Q Consensus 393 ~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~ 450 (515)
.-..+++. ++.++++-...+.|..++..+++.. ..+.........+++
T Consensus 290 --------~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~-~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 290 --------HPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQ-EIIRNKLHFPMDIHT 337 (386)
T ss_dssp --------SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSC-EEEECSCSCCCCEEE
T ss_pred --------CceEEEEE-CCEEEEeeCCCCeEEEEECCCCcce-EEEccCCCCCceEEE
Confidence 01267773 4556666677889999986666433 444433333334433
No 262
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.14 E-value=0.00037 Score=69.94 Aligned_cols=304 Identities=12% Similarity=0.050 Sum_probs=152.8
Q ss_pred CcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccC--CCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCC
Q 010206 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKA--AGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGG 203 (515)
Q Consensus 126 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~ 203 (515)
+..+++++.++.|..+|..+++.+............ .....+. ..+++ .+..+ +.++.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~------~~~~~--~~~~v------------~v~~~ 125 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVN------RGVAL--WGDKV------------YVGTL 125 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCC------CCCEE--EBTEE------------EEECT
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCc------cceEE--ECCEE------------EEEcC
Confidence 347778888899999999999988776544221100 0000000 01111 12222 56667
Q ss_pred cccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC---CCCEEEEe-C------CCcEEEEeCCCCCcccceec
Q 010206 204 VSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS---DGETFISA-D------DLRINLWNLEISNQSFNIVD 273 (515)
Q Consensus 204 ~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~s~-~------d~~i~iwd~~~~~~~~~~~~ 273 (515)
++.+..+| ..+. +....+..........+.-.| ++ .++.+ . ++.|..+|.++++...+...
T Consensus 126 dg~l~alD--~~tG------~~~W~~~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 126 DGRLIALD--AKTG------KAIWSQQTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp TSEEEEEE--TTTC------CEEEEEECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEE--CCCC------CEeeeeccCCCCCcceecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence 78888777 2222 112111111000000011111 34 44444 2 48899999998876544321
Q ss_pred c--cCcc-------------cc--------ccCCceEEEEEecCCCcEEEEEecCC-------------------eEEEE
Q 010206 274 V--KPAN-------------ME--------DLTEVITSAEFHPTHCNMLAYSSSKG-------------------SIRLI 311 (515)
Q Consensus 274 ~--~~~~-------------~~--------~~~~~i~~i~~~p~~~~~l~~~~~dg-------------------~i~~w 311 (515)
. .+.. .. ++......+++.|+. .+++.++.++ .|..+
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al 275 (668)
T 1kv9_A 197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (668)
T ss_dssp SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 1 0000 00 111122357888887 6788887766 38999
Q ss_pred ecCcccccccccceeeeccCCCccccccccccceeEEEEccCCC---EEEEEcC-CeEEEEEeeCCCCCeeeEeeeccc-
Q 010206 312 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR---HILSRDY-MTLKLWDINMDSGPVATFQVHEHL- 386 (515)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~---~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~- 386 (515)
|.++++...+.... .+.... +. ...+.....+..+|+ .++.++. |.++++|..+ ++++.........
T Consensus 276 D~~tG~~~W~~~~~--~~~~wd----~~-~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~w 347 (668)
T 1kv9_A 276 RPDTGKLAWHYQVT--PGDSWD----FT-ATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTN-GKLISAEKFGKVTW 347 (668)
T ss_dssp CTTTCCEEEEEESS--TTCCSC----CC-CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEEESSCCCS
T ss_pred cCCCCceeeEeecC--CCcccc----cc-CCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCC-CCEecccccccccc
Confidence 99999865432110 000000 00 012222223334665 5667765 9999999987 7766443322100
Q ss_pred cccc-----c------ccccCCC---------ccceeeEEEcCCCCEEEEe-----------------------------
Q 010206 387 RPKL-----C------DLYENDS---------IFDKFECCLSGDGGRVATG----------------------------- 417 (515)
Q Consensus 387 ~~~~-----~------~~~~~~~---------~~~v~~~~~s~~~~~l~s~----------------------------- 417 (515)
...+ . ..|..+. ...-..++++|+..+++..
T Consensus 348 ~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 427 (668)
T 1kv9_A 348 AEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFAD 427 (668)
T ss_dssp EEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGG
T ss_pred ccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccc
Confidence 0000 0 0000000 0000137888887766541
Q ss_pred -------cCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEe
Q 010206 418 -------SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRV 469 (515)
Q Consensus 418 -------s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~ 469 (515)
..+|.|..||+.+++ ..-..+.+ .+.........+.+++.++.|+.++.+
T Consensus 428 ~~~~p~~~~~g~l~A~D~~tG~-~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~ 484 (668)
T 1kv9_A 428 ATDVPAAVVSGALLAWDPVKQK-AAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAY 484 (668)
T ss_dssp CCCCCGGGCEEEEEEEETTTTE-EEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEE
T ss_pred cCCCCCCCccceEEEEeCCCCc-EEEEccCC-CCCcCceeEeCCCEEEEECCcccchhh
Confidence 134889999999884 33333332 223333344467788889999999983
No 263
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.14 E-value=0.0047 Score=56.41 Aligned_cols=157 Identities=10% Similarity=0.060 Sum_probs=91.6
Q ss_pred eEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC-CeEEEEec
Q 010206 237 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLIDM 313 (515)
Q Consensus 237 v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-g~i~~wd~ 313 (515)
...+++++.+..|..+ ..+.|.+.++...... .+ ....-.....++++|.+..++.+-... +.|..+++
T Consensus 118 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~-~l-------~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~ 189 (349)
T 3v64_C 118 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK-VL-------LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 189 (349)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EE-------ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred ccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE-EE-------EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeC
Confidence 4567787755555444 5778999888743321 11 112234578999999763555554445 78888887
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--CeEEEEEeeCCCCCeeeEeeecccccccc
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLC 391 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 391 (515)
..... ..+- .........++++|++..|+.++. +.|..+|+. +.....+......
T Consensus 190 dG~~~-----~~~~-----------~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d--G~~~~~~~~~~~~----- 246 (349)
T 3v64_C 190 DGSGR-----RIIA-----------DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD--GSHRKAVISQGLP----- 246 (349)
T ss_dssp TSCSC-----EESC-----------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEECSSCS-----
T ss_pred CCCCc-----EEEE-----------ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC--CCceEEEEeCCCC-----
Confidence 54321 1110 001134688999998777777653 889999886 3332332211100
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc
Q 010206 392 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 392 ~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
.-..+++. ++.++++-...+.|..++..+++..
T Consensus 247 ---------~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~ 279 (349)
T 3v64_C 247 ---------HPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQ 279 (349)
T ss_dssp ---------SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred ---------CceEEEEE-CCEEEEecCCCCeEEEEEccCCCcc
Confidence 01267773 4555666667788988886666433
No 264
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.12 E-value=0.00098 Score=66.94 Aligned_cols=210 Identities=9% Similarity=0.022 Sum_probs=101.8
Q ss_pred CeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEe-cC-----Ce
Q 010206 236 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SK-----GS 307 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~d-----g~ 307 (515)
...++++..++++++.| .+..+.+||+.+.+... + . .+..... -.+++..+++ ++++.|+ .+ ..
T Consensus 244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~-~---~--~~~~~R~-~~s~~~~~dg-~iyv~GG~~~~~~~~~~ 315 (656)
T 1k3i_A 244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIP-G---P--DMQVARG-YQSSATMSDG-RVFTIGGSWSGGVFEKN 315 (656)
T ss_dssp SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEE-C---C--CCSSCCS-SCEEEECTTS-CEEEECCCCCSSSCCCC
T ss_pred ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeE-C---C--CCCcccc-ccceEEecCC-eEEEEeCcccCCccccc
Confidence 34456777899999987 46789999988654221 1 0 1111111 1345566787 8888888 34 56
Q ss_pred EEEEecCcccccccccceeeeccCCCcc-ccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccc
Q 010206 308 IRLIDMRQSALCDTHSKLFEEQEAPGTR-SFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHL 386 (515)
Q Consensus 308 i~~wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~ 386 (515)
+.+||..+.+.... ........+... .....+...+..+.. .+|+.+..+....+..||... .............
T Consensus 316 ~e~yd~~t~~W~~~--~~~~~~p~~~~~~~~~~~~~~~iyv~Gg-~~g~~~~~~~~~~v~~yd~~~-~~w~~~~~~~~~~ 391 (656)
T 1k3i_A 316 GEVYSPSSKTWTSL--PNAKVNPMLTADKQGLYRSDNHAWLFGW-KKGSVFQAGPSTAMNWYYTSG-SGDVKSAGKRQSN 391 (656)
T ss_dssp EEEEETTTTEEEEE--TTSCSGGGCCCCTTGGGTTTCSCCEEEC-GGGCEEECCSSSEEEEEECST-TCEEEEEEECEET
T ss_pred ceEeCCCCCcceeC--CCccccccccccccceeecCCceEEEEC-CCCcEEEecCccceeeeecCC-cceeecCCccccc
Confidence 89999977542110 000000000000 000001112222211 133333333336788899875 3322222111110
Q ss_pred cccccccccCCCccceeeEEEc-CCCCEEEEecCCC-----------cEEEEecCCCCcceee-eccCCC-ceeeEEECC
Q 010206 387 RPKLCDLYENDSIFDKFECCLS-GDGGRVATGSYSN-----------LFRVFGCSEGSAESTT-LEASKN-PMRRQVQTP 452 (515)
Q Consensus 387 ~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~s~dg-----------~i~iw~~~~~~~~~~~-~~~~~~-~v~~~~~~~ 452 (515)
.. . ...... -.++.|. .++++++.|+.++ .|.+||..+....... -..... .-...+..|
T Consensus 392 ~~-~----~~~~~~-~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~ 465 (656)
T 1k3i_A 392 RG-V----APDAMC-GNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLP 465 (656)
T ss_dssp TE-E----CCCCBT-CEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECT
T ss_pred cc-c----CCCCCC-CceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECC
Confidence 00 0 000000 1134444 3778888887543 6788888765433211 011112 223456678
Q ss_pred CCCeeEeecCC
Q 010206 453 SRPSRPLGSLS 463 (515)
Q Consensus 453 ~~~~l~s~~~d 463 (515)
+++.++.|+.+
T Consensus 466 ~g~i~v~GG~~ 476 (656)
T 1k3i_A 466 DGSTFITGGQR 476 (656)
T ss_dssp TSCEEEECCBS
T ss_pred CCCEEEECCcc
Confidence 99999999865
No 265
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.09 E-value=0.00025 Score=69.64 Aligned_cols=75 Identities=19% Similarity=0.173 Sum_probs=43.1
Q ss_pred CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCC
Q 010206 363 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASK 442 (515)
Q Consensus 363 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~ 442 (515)
|.|..||+.+ ++.+-........ ..-.....+.+++.|+.||.++.||.++++ ++..++...
T Consensus 466 G~l~A~D~~t-G~~~W~~~~~~~~----------------~~g~~~tagglvf~g~~dg~l~A~D~~tG~-~lW~~~~~~ 527 (582)
T 1flg_A 466 GSLRAMDPVS-GKVVWEHKEHLPL----------------WAGVLATAGNLVFTGTGDGYFKAFDAKSGK-ELWKFQTGS 527 (582)
T ss_dssp EEEEEECTTT-CCEEEEEEESSCC----------------CSCCEEETTTEEEEECTTSEEEEEETTTCC-EEEEEECSS
T ss_pred ceEEEEECCC-CCEEEEecCCCCC----------------cccceEeCCCEEEEECCCCcEEEEECCCCC-EEEEecCCC
Confidence 6788888876 5555444322111 111222346788889999999999999984 444444332
Q ss_pred Cc-eeeEEECCCCC
Q 010206 443 NP-MRRQVQTPSRP 455 (515)
Q Consensus 443 ~~-v~~~~~~~~~~ 455 (515)
.. -..+.+..+|+
T Consensus 528 g~~a~P~~y~~~G~ 541 (582)
T 1flg_A 528 GIVSPPITWEQDGE 541 (582)
T ss_dssp CCCSCCEEEEETTE
T ss_pred CcccCceEEEECCE
Confidence 21 12344545555
No 266
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.09 E-value=0.0053 Score=55.21 Aligned_cols=234 Identities=7% Similarity=-0.031 Sum_probs=126.3
Q ss_pred EEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEE
Q 010206 129 YLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLR 208 (515)
Q Consensus 129 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~ 208 (515)
|+.+.. ..|+..|+.+.+...+...... +..+++.+.+..+ +++....+.|.
T Consensus 4 ll~~~~-~~I~~i~~~~~~~~~~~~~~~~----------------p~g~~~d~~~~~l-----------y~~D~~~~~I~ 55 (316)
T 1ijq_A 4 LFFTNR-HEVRKMTLDRSEYTSLIPNLRN----------------VVALDTEVASNRI-----------YWSDLSQRMIC 55 (316)
T ss_dssp EEEECB-SSEEEEETTSCCCEEEECSCSS----------------EEEEEEETTTTEE-----------EEEETTTTEEE
T ss_pred EEEECC-CeEEEEECCCcceEehhcCCCc----------------eEEEEEEeCCCEE-----------EEEECCCCcEE
Confidence 444333 5688888887765443321111 1167777765544 13444456777
Q ss_pred eeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCce
Q 010206 209 LPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVI 286 (515)
Q Consensus 209 i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 286 (515)
.++ ..... ............-..+..+++++.+..|..+ ..+.|.+.++.... ...+. .......
T Consensus 56 ~~~--~~g~~---~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~~-------~~~~~~P 122 (316)
T 1ijq_A 56 STQ--LDRAH---GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLF-------RENGSKP 122 (316)
T ss_dssp EEE--C-----------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEE-------ECTTCCE
T ss_pred EEE--CCCCC---CCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCc-eEEEE-------ECCCCCc
Confidence 666 22200 0001111112222456788998755555444 68899999987432 21111 1123467
Q ss_pred EEEEEecCCCcEEEEEecC-CeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--C
Q 010206 287 TSAEFHPTHCNMLAYSSSK-GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--M 363 (515)
Q Consensus 287 ~~i~~~p~~~~~l~~~~~d-g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~ 363 (515)
..++++|.+..++.+.... +.|..+++..... +.+-. ..-.....+++++++..|+.++. +
T Consensus 123 ~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~-----~~~~~-----------~~~~~P~gla~d~~~~~lY~~D~~~~ 186 (316)
T 1ijq_A 123 RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-----YSLVT-----------ENIQWPNGITLDLLSGRLYWVDSKLH 186 (316)
T ss_dssp EEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-----EEEEC-----------SSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred ceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe-----EEEEE-----------CCCCCceEEEEeccCCEEEEEECCCC
Confidence 8999999763444444333 6788888753221 11110 01134688999998887777653 7
Q ss_pred eEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc
Q 010206 364 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 364 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
.|..+|+. +.....+...... ...-..+++. ++.++++-...+.|..++..+++..
T Consensus 187 ~I~~~d~d--g~~~~~~~~~~~~------------~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~ 242 (316)
T 1ijq_A 187 SISSIDVN--GGNRKTILEDEKR------------LAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV 242 (316)
T ss_dssp EEEEEETT--SCSCEEEEECTTT------------TSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred eEEEEecC--CCceEEEeecCCc------------cCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcce
Confidence 99999986 3333333221100 0001267775 4556666677889999998776433
No 267
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.08 E-value=0.0036 Score=61.42 Aligned_cols=80 Identities=10% Similarity=0.135 Sum_probs=45.8
Q ss_pred EEecCCCCEEEEe-CC----------------CcEEEEeCCCCCcccceecccC--ccccccCCceEEEEEe-cCCC--c
Q 010206 240 ISNNSDGETFISA-DD----------------LRINLWNLEISNQSFNIVDVKP--ANMEDLTEVITSAEFH-PTHC--N 297 (515)
Q Consensus 240 ~~~~~~~~~l~s~-~d----------------~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~i~~i~~~-p~~~--~ 297 (515)
+++.++..++..+ .+ +.|..+|.++++.......... ..+.....++. +... .+|. .
T Consensus 246 ~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~ 324 (599)
T 1w6s_A 246 YAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARK 324 (599)
T ss_dssp CEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEE
T ss_pred eeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEE
Confidence 4556666677666 43 3789999998876543210000 00001112222 2222 3442 3
Q ss_pred EEEEEecCCeEEEEecCcccccc
Q 010206 298 MLAYSSSKGSIRLIDMRQSALCD 320 (515)
Q Consensus 298 ~l~~~~~dg~i~~wd~~~~~~~~ 320 (515)
.++.++.+|.+.++|.++++.+.
T Consensus 325 ~v~~~~~~G~l~~lD~~tG~~lw 347 (599)
T 1w6s_A 325 LLTHPDRNGIVYTLDRTDGALVS 347 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEECCCcEEEEEECCCCCEee
Confidence 67778899999999999998654
No 268
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.08 E-value=0.0039 Score=53.46 Aligned_cols=213 Identities=12% Similarity=0.085 Sum_probs=118.2
Q ss_pred ccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEE
Q 010206 279 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL 358 (515)
Q Consensus 279 ~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 358 (515)
+.+-...+..++++|++..++++...++.|...|.. ++...+ +.. .+ ......+++.+++.+++
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~----i~l----------~g-~~D~EGIa~~~~g~~~v 85 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRT----IPL----------DF-VKDLETIEYIGDNQFVI 85 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEE----EEC----------SS-CSSEEEEEECSTTEEEE
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEE----Eec----------CC-CCChHHeEEeCCCEEEE
Confidence 344456799999999874677778888999999987 554321 111 00 13467888888888777
Q ss_pred EEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCC--CCcce
Q 010206 359 SRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE--GSAES 435 (515)
Q Consensus 359 s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~--~~~~~ 435 (515)
+... +.+.++++..... +.......-. +.....+. +...++|+|+++.|+++.......+|.+.. .....
T Consensus 86 s~E~~~~l~~~~v~~~~~-i~~~~~~~~~---~~~~~~N~---g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l 158 (255)
T 3qqz_A 86 SDERDYAIYVISLTPNSE-VKILKKIKIP---LQESPTNC---GFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNEL 158 (255)
T ss_dssp EETTTTEEEEEEECTTCC-EEEEEEEECC---CSSCCCSS---CCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCC
T ss_pred EECCCCcEEEEEcCCCCe-eeeeeeeccc---cccccccC---CcceEEEeCCCCEEEEEECcCCceEEEEcccccCCce
Confidence 7544 8999999975332 2222211100 00011111 234899999998777776655555555531 00111
Q ss_pred eee-------ccCCCceeeEEECCCCC-eeEeecCCCeEEE--ecCCCCCccccCCcccc---ccCCeeEEEEcCCCCEE
Q 010206 436 TTL-------EASKNPMRRQVQTPSRP-SRPLGSLSGVVRR--VKGADNSALDANGNAFD---FSMKLLHLAWHPSENSI 502 (515)
Q Consensus 436 ~~~-------~~~~~~v~~~~~~~~~~-~l~s~~~d~~v~l--~~~~~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l 502 (515)
..+ ..+.....++++.|... +++....+..+-. .++.-.....+.....+ --..-..++|.++|+..
T Consensus 159 ~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ly 238 (255)
T 3qqz_A 159 HISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIY 238 (255)
T ss_dssp EEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEE
T ss_pred eeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEE
Confidence 111 11234567888888654 4444444444444 22221111111111100 01356899999999976
Q ss_pred EEEcCCcEEEEe
Q 010206 503 ACAASNSLYMYY 514 (515)
Q Consensus 503 a~~~~~~~~i~~ 514 (515)
+++-.|-++.|.
T Consensus 239 IvsE~n~~y~f~ 250 (255)
T 3qqz_A 239 IVSEPNRFYRFT 250 (255)
T ss_dssp EEETTTEEEEEE
T ss_pred EEcCCceEEEEE
Confidence 676666666664
No 269
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.03 E-value=0.00024 Score=72.51 Aligned_cols=193 Identities=12% Similarity=0.076 Sum_probs=104.9
Q ss_pred CeEEEEec-CCCCEEEEe-C-CC----cEEEEeCCCC-CcccceecccCccccccCCceEEEEEecCCCcEEEEEecC--
Q 010206 236 HINSISNN-SDGETFISA-D-DL----RINLWNLEIS-NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-- 305 (515)
Q Consensus 236 ~v~~~~~~-~~~~~l~s~-~-d~----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-- 305 (515)
.+...+|| |||++|+.+ + +| +|+++|+.++ +.... .+. ....+++|+||+ +.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-------~~~---~~~~~~~WspDg-~~l~y~~~d~~ 243 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-------KVS---GTNGEIVWGPDH-TSLFYVTKDET 243 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-------CEE---EECSCCEECSST-TEEEEEEECTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-------ccc---CceeeEEEecCC-CEEEEEEECCC
Confidence 67789999 999999865 2 33 4999999877 42211 111 113467899998 666666654
Q ss_pred ---CeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc---C-CeEEEEEeeCCCCCe-
Q 010206 306 ---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD---Y-MTLKLWDINMDSGPV- 377 (515)
Q Consensus 306 ---g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~---~-~~i~iwd~~~~~~~~- 377 (515)
..|.++++.++.... ...++.. .......+.|||||++|+... . ..|.++|+..+....
T Consensus 244 ~~~~~v~~~~lgt~~~~~--~lv~~~~-----------~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~ 310 (751)
T 2xe4_A 244 LRENKVWRHVMGKLQSED--VCLYEEH-----------NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNT 310 (751)
T ss_dssp CCEEEEEEEETTSCGGGC--EEEEECC-----------CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCC
T ss_pred CCCCEEEEEECCCCchhc--EEEEecC-----------CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCce
Confidence 257777776653211 1122211 112356789999999988632 2 678888887521122
Q ss_pred -eeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCC----CcEEEEecCCCCcceee-eccCCC--ceeeEE
Q 010206 378 -ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS----NLFRVFGCSEGSAESTT-LEASKN--PMRRQV 449 (515)
Q Consensus 378 -~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d----g~i~iw~~~~~~~~~~~-~~~~~~--~v~~~~ 449 (515)
..+...... ..+++.|+.++.+++....+ ..|..+++.+.+.. .. +-.+.. .+..+.
T Consensus 311 ~~~l~~~~~~--------------~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~-~~~li~~~~~~~l~~~~ 375 (751)
T 2xe4_A 311 LEIVRPREKG--------------VRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDW-SHVLVDHSEDVFMESIA 375 (751)
T ss_dssp EEESSCCCTT--------------CCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCC-CCEEECCCSSEEEEEEE
T ss_pred eEEeecCCCC--------------ceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccc-eeeEECCCCCcEEEEEE
Confidence 222211100 01244444333344444333 35666777642121 22 222322 334455
Q ss_pred ECCCCCeeEeecCCCeEEE
Q 010206 450 QTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 450 ~~~~~~~l~s~~~d~~v~l 468 (515)
+. .+.++++...++..++
T Consensus 376 ~~-~~~lv~~~~~~g~~~l 393 (751)
T 2xe4_A 376 VR-SNYLVVAGRRAGLTRI 393 (751)
T ss_dssp EC-SSEEEEEEEETTEEEE
T ss_pred EE-CCEEEEEEEeCCEEEE
Confidence 54 3445677777887666
No 270
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.01 E-value=0.0064 Score=61.99 Aligned_cols=73 Identities=14% Similarity=0.140 Sum_probs=41.7
Q ss_pred CeEEEEecCCCCEEEEe----CCCcEEEEeCCCCCccc--ceecccCccccccCCceEEEEEecCCCcEEEEEecC--C-
Q 010206 236 HINSISNNSDGETFISA----DDLRINLWNLEISNQSF--NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--G- 306 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~----~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d--g- 306 (515)
....+.|+||+++|+.. ....|.++|+.++.... .. ..........++.|+..+ .+++....+ +
T Consensus 272 ~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~------l~~~~~~~~~s~~~~~g~-~l~~~t~~~~a~~ 344 (751)
T 2xe4_A 272 FSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEI------VRPREKGVRYDVQMHGTS-HLVILTNEGGAVN 344 (751)
T ss_dssp CEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEE------SSCCCTTCCEEEEEETTT-EEEEEECTTTCTT
T ss_pred eEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEE------eecCCCCceEEEeeeeCC-EEEEEeCCCCCCC
Confidence 34578899999988764 24568888987653211 11 112234455666665544 555555444 2
Q ss_pred -eEEEEecCc
Q 010206 307 -SIRLIDMRQ 315 (515)
Q Consensus 307 -~i~~wd~~~ 315 (515)
.|..+|+.+
T Consensus 345 ~~L~~~d~~~ 354 (751)
T 2xe4_A 345 HKLLIAPRGQ 354 (751)
T ss_dssp CEEEEEETTS
T ss_pred cEEEEEcCCC
Confidence 566666653
No 271
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.96 E-value=0.012 Score=54.78 Aligned_cols=247 Identities=8% Similarity=0.001 Sum_probs=131.9
Q ss_pred EEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccE
Q 010206 128 LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSL 207 (515)
Q Consensus 128 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i 207 (515)
+|+.+ ....|+..++.......+.... ..+. .++|.+.+..| +++-...+.|
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~~~~~~~---------~~~~-------~l~~d~~~~~l-----------ywsD~~~~~I 136 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYTSLIPNL---------RNVV-------ALDTEVASNRI-----------YWSDLSQRMI 136 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCEEEECSC---------SCEE-------EEEEETTTTEE-----------EEEETTTTEE
T ss_pred eeEEe-ccceeEEEccCCcceeEecccc---------Ccce-------EEeeeeccCce-----------EEEecCCCeE
Confidence 44443 4467888888876544433211 1111 67777655544 1333344566
Q ss_pred EeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCc
Q 010206 208 RLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV 285 (515)
Q Consensus 208 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 285 (515)
..++ +..... .................+++.+.+..|..+ ..+.|.+.+++..... .+ +......
T Consensus 137 ~~~~--~~g~~~---~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~-~l-------~~~~~~~ 203 (400)
T 3p5b_L 137 CSTQ--LDRAHG---VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK-TL-------FRENGSK 203 (400)
T ss_dssp EEEE--C---------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEE-EE-------EECSSCC
T ss_pred EEEE--cccCCC---CCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceE-EE-------EeCCCCC
Confidence 6555 222110 001111122234567889998855555544 5788999988744321 11 1122345
Q ss_pred eEEEEEecCCCcEEEEEec--CCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-
Q 010206 286 ITSAEFHPTHCNMLAYSSS--KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY- 362 (515)
Q Consensus 286 i~~i~~~p~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~- 362 (515)
...|++.|.+ ..|+.... .+.|...++..... ..+- ...-.....|++++++..|+.++.
T Consensus 204 P~~iavdp~~-g~ly~td~~~~~~I~~~~~dG~~~-----~~~~-----------~~~l~~P~glavd~~~~~lY~aD~~ 266 (400)
T 3p5b_L 204 PRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDI-----YSLV-----------TENIQWPNGITLDLLSGRLYWVDSK 266 (400)
T ss_dssp EEEEEEETTT-TEEEEEECSSSCCEEEEETTSCSC-----EEEE-----------CSSCSCEEEEEEETTTTEEEEEETT
T ss_pred cceEEEeccc-CeEEEEeCCCCCEEEEEeCCCCcc-----EEEE-----------ECCCCceEEEEEEeCCCEEEEEECC
Confidence 7899999976 44444442 36788888754321 1110 011135688999998888877653
Q ss_pred -CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccC
Q 010206 363 -MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS 441 (515)
Q Consensus 363 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~ 441 (515)
+.|..+|+. +.....+...... +..-..+++. .+.++++-...+.|..++..+++.. ..+...
T Consensus 267 ~~~I~~~d~d--G~~~~~~~~~~~~------------l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~-~~i~~~ 330 (400)
T 3p5b_L 267 LHSISSIDVN--GGNRKTILEDEKR------------LAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV-NLLAEN 330 (400)
T ss_dssp TTEEEEEETT--SCCCEEEEECSST------------TSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCC-EEEECS
T ss_pred CCEEEEEeCC--CCccEEEEeCCCC------------CCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCce-EEEecC
Confidence 789988886 3333333321110 0001256663 3445556667788999997777444 444433
Q ss_pred CCceeeE
Q 010206 442 KNPMRRQ 448 (515)
Q Consensus 442 ~~~v~~~ 448 (515)
......+
T Consensus 331 ~~~p~~i 337 (400)
T 3p5b_L 331 LLSPEDM 337 (400)
T ss_dssp CSCEEEE
T ss_pred CCCCceE
Confidence 3333344
No 272
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.96 E-value=0.0054 Score=57.82 Aligned_cols=268 Identities=9% Similarity=0.020 Sum_probs=134.7
Q ss_pred eeEEEEEeec-CCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 114 KINKIRWCQS-ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 114 ~v~~l~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
....|+|.|. .++ .|+.+...+.|+.++..++.......... .+..++++++|+.+
T Consensus 140 ~P~gvavd~~s~~g-~Lyv~D~~~~I~~id~~~g~v~~~~~~~~----------------~P~giavd~dG~ly------ 196 (433)
T 4hw6_A 140 NIWRMMFDPNSNYD-DLYWVGQRDAFRHVDFVNQYVDIKTTNIG----------------QCADVNFTLNGDMV------ 196 (433)
T ss_dssp CCCEEEECTTTTTC-EEEEECBTSCEEEEETTTTEEEEECCCCS----------------CEEEEEECTTCCEE------
T ss_pred CCceEEEccccCCC-EEEEEeCCCCEEEEECCCCEEEEeecCCC----------------CccEEEECCCCCEE------
Confidence 3568888542 234 45555444889999998887665543111 11278899999833
Q ss_pred CCCCCCCCCCCc--ccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC-CCCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 193 ASNDSSFPPGGV--SSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 193 ~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
++.... ..-.++. +.. ....... .. + ..-.....++++| ++.++++- .++.|+.+|..++...
T Consensus 197 ------Vad~~~~~~~~gv~~--~~~-~~~~~~~--~~-~-~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~ 263 (433)
T 4hw6_A 197 ------VVDDQSSDTNTGIYL--FTR-ASGFTER--LS-L-CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT 263 (433)
T ss_dssp ------EEECCSCTTSEEEEE--ECG-GGTTCCE--EE-E-EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE
T ss_pred ------EEcCCCCcccceEEE--EEC-CCCeecc--cc-c-cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE
Confidence 211100 0111111 111 1111000 01 1 1224456788999 67666665 6888999998755431
Q ss_pred cceecccCccccccCCceEEEEEecCCCc-EEEEEecCCeEEEEecCc--ccccccccceeeec-cCCCccc--cccccc
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCN-MLAYSSSKGSIRLIDMRQ--SALCDTHSKLFEEQ-EAPGTRS--FFTEII 342 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~-~l~~~~~dg~i~~wd~~~--~~~~~~~~~~~~~~-~~~~~~~--~~~~~~ 342 (515)
..+... +.......++|+|++ + ++++-...+.|+.+++.. +... ....+.+. ....... .....-
T Consensus 264 ~~~~~~------~~~~~~~~ia~dpdG-~~LYvad~~~~~I~~~~~d~~~~~~~--~~~~~ag~~g~~g~~dg~~~~a~~ 334 (433)
T 4hw6_A 264 EEEVMM------DTKGSNFHIVWHPTG-DWAYIIYNGKHCIYRVDYNRETGKLA--VPYIVCGQHSSPGWVDGMGTGARL 334 (433)
T ss_dssp EEEEEC------SCCSSCEEEEECTTS-SEEEEEETTTTEEEEEEBCTTTCCBC--CCEEEEECTTCCCCBCEEGGGSBC
T ss_pred EEEecc------CCCCCcccEEEeCCC-CEEEEEeCCCCEEEEEeCCCCCcccC--cEEEEEecCCCCccCCCcccceEE
Confidence 121110 112223579999999 6 555555678999988653 2211 01111111 0000000 000011
Q ss_pred cceeEEEE---------ccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecc--ccccccc-cccCCCccceeeEEEc-
Q 010206 343 ASISDIKF---------ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEH--LRPKLCD-LYENDSIFDKFECCLS- 408 (515)
Q Consensus 343 ~~i~~~~~---------s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~v~~~~~s- 408 (515)
.....+++ .++|.+.++-.. +.|+.++.. + .+.++.+... ......- ......+..-..++++
T Consensus 335 ~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~--G-~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~ 411 (433)
T 4hw6_A 335 WGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE--G-RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDM 411 (433)
T ss_dssp SSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT--S-EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEET
T ss_pred cCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC--C-CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEEC
Confidence 24567888 666766665444 788888742 3 3444443321 0000000 0001112223479999
Q ss_pred CCCCEEEEecCCCcEEEEecC
Q 010206 409 GDGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 409 ~~~~~l~s~s~dg~i~iw~~~ 429 (515)
++|.++++-...++|+.++++
T Consensus 412 ~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 412 KRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCEEEEEeCCCCEEEEEecC
Confidence 677777766677888888764
No 273
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.91 E-value=0.013 Score=55.60 Aligned_cols=217 Identities=14% Similarity=0.037 Sum_probs=110.8
Q ss_pred CCeEEEEe-------cCCCCEEEEe-C-CC------cEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEE
Q 010206 235 YHINSISN-------NSDGETFISA-D-DL------RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML 299 (515)
Q Consensus 235 ~~v~~~~~-------~~~~~~l~s~-~-d~------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l 299 (515)
.....++| +++++.|+.+ . ++ .|.+++...........+. ..+... .....++++|++..++
T Consensus 186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~--~~v~~~-~~p~giavdp~~g~LY 262 (496)
T 3kya_A 186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDI--QLIAAY-KQCNGATIHPINGELY 262 (496)
T ss_dssp SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCE--EEEEEE-SCCCCEEECTTTCCEE
T ss_pred CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccc--eeeccC-CCceEEEEcCCCCeEE
Confidence 35778889 9999866665 3 32 2666664331111100000 011111 2345778899653677
Q ss_pred EEEecCCeEEEEecC-------cccccccc-------c-ceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-C-
Q 010206 300 AYSSSKGSIRLIDMR-------QSALCDTH-------S-KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y- 362 (515)
Q Consensus 300 ~~~~~dg~i~~wd~~-------~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~- 362 (515)
++-..++.|..+|+. ++..-... . ..+.. +.......++|+|+|++|+.++ .
T Consensus 263 vtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~-----------~~~~~p~~ia~~p~G~~lYvaD~~~ 331 (496)
T 3kya_A 263 FNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI-----------ADPSWEFQIFIHPTGKYAYFGVINN 331 (496)
T ss_dssp EEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC-----------SSSSCCEEEEECTTSSEEEEEETTT
T ss_pred EEECCCCEEEEEecccccccccCceeecccccccccccceeEec-----------CCCCCceEEEEcCCCCEEEEEeCCC
Confidence 777778899999987 44320000 0 00111 0113457899999999766654 3
Q ss_pred CeEEEEEeeCCCCCe---eeEeeeccccccccccccCCCcccee-eEEEc-------CCCCEEEEecCCCcEEEEecCCC
Q 010206 363 MTLKLWDINMDSGPV---ATFQVHEHLRPKLCDLYENDSIFDKF-ECCLS-------GDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 363 ~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s-------~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
..|+.++.......+ .++.+.........-......+..-. .++.. ++|.++++=....+|+.++. ++
T Consensus 332 h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G 410 (496)
T 3kya_A 332 HYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG 410 (496)
T ss_dssp TEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC
T ss_pred CEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CC
Confidence 889988876322221 33433311100000000001111112 24444 46677777777889999984 34
Q ss_pred CcceeeeccC------------------------CCceeeEEECCC-CCeeEeecCCCeEEE
Q 010206 432 SAESTTLEAS------------------------KNPMRRQVQTPS-RPSRPLGSLSGVVRR 468 (515)
Q Consensus 432 ~~~~~~~~~~------------------------~~~v~~~~~~~~-~~~l~s~~~d~~v~l 468 (515)
.. .++-+. ......+++.++ +.++++-.....||.
T Consensus 411 -~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrk 470 (496)
T 3kya_A 411 -IV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRT 470 (496)
T ss_dssp -BE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred -CE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEE
Confidence 22 233221 123556777775 655555555566665
No 274
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.90 E-value=0.011 Score=57.99 Aligned_cols=29 Identities=3% Similarity=-0.147 Sum_probs=22.6
Q ss_pred cEEEeeeC-CCeEEEEEc-cCCeeEEEeecc
Q 010206 127 ALYLLSTN-DKTIKLWKV-QEKKVKKVFDWN 155 (515)
Q Consensus 127 ~~l~~~~~-d~~i~iwd~-~~~~~~~~~~~~ 155 (515)
..+++++. ++.|.-+|. .+++.+......
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~ 93 (599)
T 1w6s_A 63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPK 93 (599)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCcEEEEECCC
Confidence 36777776 889999999 899988776554
No 275
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.89 E-value=0.0065 Score=59.57 Aligned_cols=49 Identities=12% Similarity=0.042 Sum_probs=29.4
Q ss_pred CCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEec
Q 010206 420 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK 470 (515)
Q Consensus 420 dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~ 470 (515)
+|.|..||+.+++ .+-..+.. .++........+..+..++.|+.++.++
T Consensus 443 ~g~l~a~D~~tG~-~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D 491 (571)
T 2ad6_A 443 MGQIRAFDLTTGK-AKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALD 491 (571)
T ss_dssp CEEEEEECTTTCC-EEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred CCeEEEEECCCCC-EEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEE
Confidence 5789999999884 33333322 2222222233455677788999998833
No 276
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.89 E-value=0.0065 Score=57.25 Aligned_cols=265 Identities=9% Similarity=0.042 Sum_probs=131.8
Q ss_pred eeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccC
Q 010206 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (515)
Q Consensus 114 ~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~ 193 (515)
....|++.|. ++..|+++...+.|+.+|+..+.+..+..... .+..++++++|+.|
T Consensus 138 ~P~~lavdp~-~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~----------------~P~~ia~d~~G~~l------- 193 (430)
T 3tc9_A 138 GAVWLSFDPK-NHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLS----------------KVRTICWTHEADSM------- 193 (430)
T ss_dssp CCCEEEEETT-EEEEEEEEEBTEEEEEEETTTTEEEEEECCCS----------------CEEEEEECTTSSEE-------
T ss_pred CCCEEEECCC-CCCeEEEEeCCCcEEEEECCCCEEEEEecCCC----------------CcceEEEeCCCCEE-------
Confidence 4577888541 23356666555889999998877655433111 11278899999855
Q ss_pred CCCCCCCCCC-cc----cEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC-CCCEEEEe-CCCcEEEEeCCCCC
Q 010206 194 SNDSSFPPGG-VS----SLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISN 266 (515)
Q Consensus 194 ~~~~~~~~~~-~~----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~ 266 (515)
+.+.. .+ .+...+ .+...... ... . .......++++| ++.++++- .++.|..++.....
T Consensus 194 -----yvad~~~~~~~~~v~~~~-----~~g~~~~~--~~l-~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~ 259 (430)
T 3tc9_A 194 -----IITNDQNNNDRPNNYILT-----RESGFKVI--TEL-T-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE 259 (430)
T ss_dssp -----EEEECCSCTTSEEEEEEE-----GGGTSCSE--EEE-E-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE
T ss_pred -----EEEeCCCCcccceEEEEe-----CCCceeee--eee-c-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc
Confidence 22221 11 122121 11111100 111 1 123456788999 67766665 68899999987543
Q ss_pred cccceecccCccccccCCceEEEEEecCCCc-EEEEEecCCeEEEEecCcc--cccccccceeeec-cCCCccc--ccc-
Q 010206 267 QSFNIVDVKPANMEDLTEVITSAEFHPTHCN-MLAYSSSKGSIRLIDMRQS--ALCDTHSKLFEEQ-EAPGTRS--FFT- 339 (515)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~-~l~~~~~dg~i~~wd~~~~--~~~~~~~~~~~~~-~~~~~~~--~~~- 339 (515)
.. .+. ... .......++|+|++ + ++++-...+.|..++.... ... ....+... ....... ...
T Consensus 260 ~~-~~~-----~~~-~~~~P~gia~~pdG-~~lyv~d~~~~~I~~~~~d~~~~~~~--~~~~~ag~~g~~g~~dg~~~~a 329 (430)
T 3tc9_A 260 TT-PLF-----TIQ-DSGWEFHIQFHPSG-NYAYIVVVNQHYILRSDYDWKTKRLT--TPYIVCGQQGAKDWVDGVGKKA 329 (430)
T ss_dssp EE-EEE-----ECS-SSSCCEEEEECTTS-SEEEEEETTTTEEEEEEEETTTTEEC--CCEEEEECTTCBCCBCEEGGGC
T ss_pred EE-EEE-----EcC-CCCcceeEEEcCCC-CEEEEEECCCCEEEEEeCCccccccc--ceEEEeccCCCCCCCCCCCcce
Confidence 21 111 111 12446899999999 6 5555566889999886532 110 01112111 0000000 000
Q ss_pred ccccceeEEEEc--------cCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecc--ccccccc-cccCCCccceeeEEE
Q 010206 340 EIIASISDIKFA--------RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEH--LRPKLCD-LYENDSIFDKFECCL 407 (515)
Q Consensus 340 ~~~~~i~~~~~s--------~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~v~~~~~ 407 (515)
....+-..+... ++|.+.++-.. +.|+.++.. + .+.++.+... ......- ......+..-..+++
T Consensus 330 ~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~--G-~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giav 406 (430)
T 3tc9_A 330 RMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQ--G-RVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVY 406 (430)
T ss_dssp BBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTT--S-EEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEE
T ss_pred EeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCC--C-cEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEE
Confidence 011122245553 33544444333 788888732 3 3444443310 0000000 000011222348999
Q ss_pred cCC-CCEEEEecCCCcEEEEecC
Q 010206 408 SGD-GGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 408 s~~-~~~l~s~s~dg~i~iw~~~ 429 (515)
+|+ +.++++-...+.|+.++++
T Consensus 407 d~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 407 DEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp ETTTTEEEEEEGGGTEEEEEEEC
T ss_pred ECCCCEEEEEECCCCeEEEEccC
Confidence 994 6666666677788888764
No 277
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.87 E-value=0.044 Score=58.30 Aligned_cols=33 Identities=6% Similarity=-0.006 Sum_probs=27.4
Q ss_pred ccceEEEEECCC------CCeEEeecC-CCeEEEEEcccC
Q 010206 35 VDIISAIEFDKS------GDHLATGDR-GGRVVLFERTDT 67 (515)
Q Consensus 35 ~~~v~~v~~s~~------g~~lasg~~-dg~v~vw~~~~~ 67 (515)
.+.|+|+++.|. ++++|+|.. |++|+|+++.+.
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l 592 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSF 592 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTC
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCC
Confidence 467999999873 369999996 999999998753
No 278
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.83 E-value=0.0084 Score=54.28 Aligned_cols=199 Identities=11% Similarity=0.051 Sum_probs=110.7
Q ss_pred CeEEEEecCCCCEEEEe-------------CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEec--CCC-cEE
Q 010206 236 HINSISNNSDGETFISA-------------DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP--THC-NML 299 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p--~~~-~~l 299 (515)
..-++...|+|..++++ .+|.|.++|+++.......+.+....+.........+.+.+ ++. +++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34566777887777765 58999999997543222211111000122345678888866 342 244
Q ss_pred EEEec--CCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC---------------
Q 010206 300 AYSSS--KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--------------- 362 (515)
Q Consensus 300 ~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--------------- 362 (515)
++-.. +..|.+|++............++... -...+.+.+.++|++.++...
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~-----------~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~ 199 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKL-----------LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLG 199 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTT-----------CSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCC-----------CCCCceEEEeCCCCEEecCCcEeCCcccccchhhcc
Confidence 44444 56788888765432222233333221 135789999999998877531
Q ss_pred -CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEe-cCCCcEEEEecCCCCcce--eee
Q 010206 363 -MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAES--TTL 438 (515)
Q Consensus 363 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-s~dg~i~iw~~~~~~~~~--~~~ 438 (515)
..=.+|.+.. ++ +..+...-.. -..++||||++.|+.+ +..+.|+.|++...+.+. ..+
T Consensus 200 ~~~g~vyr~d~-~~-~~~~~~~l~~---------------pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~ 262 (355)
T 3sre_A 200 LAWSFVTYYSP-ND-VRVVAEGFDF---------------ANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL 262 (355)
T ss_dssp CCCEEEEEECT-TC-CEEEEEEESS---------------EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE
T ss_pred CCccEEEEEEC-Ce-EEEeecCCcc---------------cCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE
Confidence 1234454442 32 2222111111 2379999999877655 467899999987433322 233
Q ss_pred ccCCCceeeEEECC-CCCeeEeecCC
Q 010206 439 EASKNPMRRQVQTP-SRPSRPLGSLS 463 (515)
Q Consensus 439 ~~~~~~v~~~~~~~-~~~~l~s~~~d 463 (515)
. .....-.+++.+ +|.+.+++..+
T Consensus 263 ~-~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 263 S-FDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp E-CSSEEEEEEECTTTCCEEEEEESC
T ss_pred e-CCCCCceEEEeCCCCcEEEEecCC
Confidence 2 234455778888 48776655433
No 279
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.83 E-value=0.016 Score=53.66 Aligned_cols=192 Identities=10% Similarity=-0.025 Sum_probs=112.2
Q ss_pred CCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEe
Q 010206 235 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 312 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd 312 (515)
..+..++|++.+..|..+ ..+.|..+++...... .+. .........+++.+.+..++++-...+.|.+.+
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~-~~~-------~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~ 187 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE-EVV-------STGLESPGGLAVDWVHDKLYWTDSGTSRIEVAN 187 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE-EEE-------CSSCSCCCCEEEETTTTEEEEEETTTTEEEECB
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE-EEE-------eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEe
Confidence 457789999766665554 6889999998754321 111 111234567889986535666666678888888
Q ss_pred cCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC---CeEEEEEeeCCCCCeeeEeeecccccc
Q 010206 313 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY---MTLKLWDINMDSGPVATFQVHEHLRPK 389 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~---~~i~iwd~~~~~~~~~~~~~~~~~~~~ 389 (515)
+..... ..+. .........++++|.+..|+..+. +.|..+++. +.....+.....
T Consensus 188 ~dg~~~-----~~l~-----------~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~~~~---- 245 (386)
T 3v65_B 188 LDGAHR-----KVLL-----------WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--GSGRRIIADTHL---- 245 (386)
T ss_dssp TTSCSC-----EEEE-----------CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEEEECSSC----
T ss_pred CCCCce-----EEee-----------cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC--CCCcEEEEECCC----
Confidence 754321 1111 011134688999997777666543 567776665 443333322111
Q ss_pred ccccccCCCccceeeEEEcCCCCEEE-EecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 390 LCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 390 ~~~~~~~~~~~~v~~~~~s~~~~~l~-s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
..-..++++|++..|+ +-+..+.|..+++... .....+.........+++ ..+..+.+-...+.|..
T Consensus 246 ----------~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~ 313 (386)
T 3v65_B 246 ----------FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS-HRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINS 313 (386)
T ss_dssp ----------SCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC-SCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEE
T ss_pred ----------CCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC-eeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEE
Confidence 0123799998766655 4456778999998743 332333333444557777 44455566555666655
No 280
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.81 E-value=0.019 Score=58.31 Aligned_cols=162 Identities=10% Similarity=0.016 Sum_probs=95.3
Q ss_pred CcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEec-C-CeE
Q 010206 233 HDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-K-GSI 308 (515)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~-d-g~i 308 (515)
.......|++.+.++.|..+ ..+.|.+.++..... ..++ .........|++.|.+ ..|+.... . +.|
T Consensus 469 ~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~-~~l~-------~~~l~~P~gIaVDp~~-g~LYwtD~g~~~~I 539 (791)
T 3m0c_C 469 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLF-------RENGSKPRAIVVDPVH-GFMYWTDWGTPAKI 539 (791)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEE-------ECTTCCEEEEEEETTT-TEEEEEECSSSCEE
T ss_pred CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE-EEEE-------eCCCCCcceEEEecCC-CCEEEecCCCCCeE
Confidence 34556789999877666655 588999999874332 1111 1223457899999986 34444443 3 678
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--CeEEEEEeeCCCCCeeeEeeeccc
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHL 386 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~~~~~~~~~~~~~~~ 386 (515)
...++..... ..+- .........|++++.+..|+.++. +.|...++. +.....+......
T Consensus 540 ~~~~~dG~~~-----~~lv-----------~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d--G~~~~~v~~~~~~ 601 (791)
T 3m0c_C 540 KKGGLNGVDI-----YSLV-----------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKR 601 (791)
T ss_dssp EEEETTSCCE-----EEEE-----------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEEECTTT
T ss_pred EEEecCCCce-----EEEE-----------eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecC--CCceEEEecCCCc
Confidence 8888754321 1111 111135788999987777777653 788888876 4444444321110
Q ss_pred cccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc
Q 010206 387 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 387 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
+..-+.+++.. +.++++-...+.|...+..+++.+
T Consensus 602 ------------l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 602 ------------LAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDV 636 (791)
T ss_dssp ------------TSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCC
T ss_pred ------------cCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcce
Confidence 00012566542 344445556788888887776443
No 281
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.70 E-value=0.028 Score=51.21 Aligned_cols=192 Identities=10% Similarity=-0.038 Sum_probs=112.1
Q ss_pred CCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEe
Q 010206 235 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 312 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd 312 (515)
..+..++|++....|..+ ..+.|..+++...... .+. .........+++.+.+.+++++-...+.|.+.+
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~-~~~-------~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~ 144 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE-EVV-------STGLESPGGLAVDWVHDKLYWTDSGTSRIEVAN 144 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEE-------CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCce-EEE-------eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEc
Confidence 346789999766666655 5888999998754322 111 111234578999986535666666678999999
Q ss_pred cCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc--C-CeEEEEEeeCCCCCeeeEeeecccccc
Q 010206 313 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y-MTLKLWDINMDSGPVATFQVHEHLRPK 389 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~-~~i~iwd~~~~~~~~~~~~~~~~~~~~ 389 (515)
+..... ..+. .........++++|.+..|+..+ . +.|..+++. +.....+....
T Consensus 145 ~dG~~~-----~~l~-----------~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~~~----- 201 (349)
T 3v64_C 145 LDGAHR-----KVLL-----------WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--GSGRRIIADTH----- 201 (349)
T ss_dssp TTSCSC-----EEEE-----------CTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEESCCSS-----
T ss_pred CCCCce-----EEEE-----------eCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC--CCCcEEEEECC-----
Confidence 864321 1111 01113468899999766666544 2 567777665 33333322111
Q ss_pred ccccccCCCccceeeEEEcCCCCEEEEe-cCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 390 LCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 390 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~-s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+..-..++++|++..|+.+ +..+.|..+++... .....+.........+++ ..+..+.+-...+.|..
T Consensus 202 ---------~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~-~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~ 270 (349)
T 3v64_C 202 ---------LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS-HRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINS 270 (349)
T ss_dssp ---------CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEE
T ss_pred ---------CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC-ceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEE
Confidence 1112379999877666544 56678999998743 332333333444556777 34455555555566555
No 282
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.68 E-value=0.027 Score=51.38 Aligned_cols=113 Identities=14% Similarity=0.097 Sum_probs=62.6
Q ss_pred CCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecC---CCcEEEEEecC-----C
Q 010206 235 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSSK-----G 306 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~---~~~~l~~~~~d-----g 306 (515)
.....++|.|+++++++-.++.|.+++ . ++ ...+.++. ...........++++|+ +..++++-... +
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~-~-g~-~~~~~~~~--v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR-E-GR-LSTYAELS--VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE-T-TE-EEEEEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE-C-CC-ccEeecce--EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 456799999999977776669999998 2 32 11111111 11122456899999998 42455544433 5
Q ss_pred eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEE
Q 010206 307 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 359 (515)
Q Consensus 307 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 359 (515)
.|..|+...+.. ......+..-... .-..| ....++|.|||.+.++
T Consensus 106 ~v~r~~~~~~~~-~~~~~l~~~~p~~----~~~~h--~~~~l~~~pdG~Lyv~ 151 (352)
T 2ism_A 106 QVVRLRHLGERG-VLDRVVLDGIPAR----PHGLH--SGGRIAFGPDGMLYVT 151 (352)
T ss_dssp EEEEEEECSSCE-EEEEEEEEEECCC----TTCCC--CCCCEEECTTSCEEEE
T ss_pred EEEEEEeCCCCc-CceEEEEEeCCCC----CCCCc--CCceEEECCCCCEEEE
Confidence 677787764321 1101111110000 00112 2368999999987776
No 283
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.65 E-value=0.032 Score=50.33 Aligned_cols=231 Identities=11% Similarity=0.087 Sum_probs=117.8
Q ss_pred CCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecC
Q 010206 235 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 314 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~ 314 (515)
..+.++.+++ +..++++..+.|.. ...+....+... ....+...+..+.+.+++ ..++.+ .++.| |...
T Consensus 80 ~~~~~i~~~~-~~~~~~g~~g~i~~--S~DgG~tW~~~~----~~~~~~~~~~~i~~~~~~-~~~~~~-~~g~v--~~S~ 148 (327)
T 2xbg_A 80 YRFNSVSFQG-NEGWIVGEPPIMLH--TTDGGQSWSQIP----LDPKLPGSPRLIKALGNG-SAEMIT-NVGAI--YRTK 148 (327)
T ss_dssp CEEEEEEEET-TEEEEEEETTEEEE--ESSTTSSCEECC----CCTTCSSCEEEEEEEETT-EEEEEE-TTCCE--EEES
T ss_pred ccEEEEEecC-CeEEEEECCCeEEE--ECCCCCCceECc----cccCCCCCeEEEEEECCC-CEEEEe-CCccE--EEEc
Confidence 3466777765 45555566664433 222222222110 001123457788887776 566655 45543 2222
Q ss_pred cccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEE-EEeeCCCCCeeeEeeecccccccccc
Q 010206 315 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKL-WDINMDSGPVATFQVHEHLRPKLCDL 393 (515)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~ 393 (515)
.+- ..+.... ..+...+..+.+.+++++++.+..+.+.. +|- .+..-..+.....
T Consensus 149 DgG------~tW~~~~--------~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~--gG~tW~~~~~~~~-------- 204 (327)
T 2xbg_A 149 DSG------KNWQALV--------QEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP--GQTAWEPHNRTTS-------- 204 (327)
T ss_dssp STT------SSEEEEE--------CSCCCCEEEEEECTTSCEEEEETTSSEEEEECT--TCSSCEEEECCSS--------
T ss_pred CCC------CCCEEee--------cCCCcceEEEEEcCCCcEEEEECCCcEEEEeCC--CCCceeECCCCCC--------
Confidence 211 1121111 11224688899999999988887654433 332 1222222211110
Q ss_pred ccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeec----cCCCceeeEEECCCCCeeEeecCCCeEEE-
Q 010206 394 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE----ASKNPMRRQVQTPSRPSRPLGSLSGVVRR- 468 (515)
Q Consensus 394 ~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~s~~~d~~v~l- 468 (515)
..+..+.+++++++++. +.+|.+++.+...+ ..-..+. .+...+..+++.+++..++.+. ++.+..
T Consensus 205 ------~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G-~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~~S 275 (327)
T 2xbg_A 205 ------RRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNS-ENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALLCS 275 (327)
T ss_dssp ------SCEEEEEECTTSCEEEE-ETTTEEEEEETTEE-EEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCEEEE
T ss_pred ------CccceeEECCCCCEEEE-eCCceEEEecCCCC-CeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeEEEe
Confidence 11347888999886654 45677777642212 1111111 1223477888888887777765 666655
Q ss_pred ecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcEE
Q 010206 469 VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLY 511 (515)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~ 511 (515)
.++.+.+.... ........+.++.|.+++..++++.+..++
T Consensus 276 ~DgG~tW~~~~--~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~ 316 (327)
T 2xbg_A 276 QDGGQTWQQDV--DVKKVPSNFYKILFFSPDQGFILGQKGILL 316 (327)
T ss_dssp SSTTSSCEECG--GGTTSSSCCCEEEEEETTEEEEECSTTEEE
T ss_pred CCCCcccEEcC--ccCCCCCCeEEEEEECCCceEEEcCCceEE
Confidence 55555552111 011123567899998766666665544333
No 284
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.60 E-value=0.00087 Score=67.44 Aligned_cols=175 Identities=12% Similarity=0.019 Sum_probs=92.6
Q ss_pred CeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC-CeEEEEe
Q 010206 236 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLID 312 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-g~i~~wd 312 (515)
....|++.+.+..|..+ ..+.|.++++...... .++ .........|++.|.+..++++-... +.|..++
T Consensus 454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~-~l~-------~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~ 525 (699)
T 1n7d_A 454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK-TLF-------REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 525 (699)
T ss_dssp -CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEE-EEC-------CCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCC
T ss_pred CcceEEEEeeCCcEEEEeccCCeEEEEecCCCceE-EEE-------eCCCCCcceEEEccCCCcEEEcccCCCCeEEEEe
Confidence 35578888654444444 5788999998743321 111 11123457888998763444433222 6777776
Q ss_pred cCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-C-CeEEEEEeeCCCCCeeeEeeeccccccc
Q 010206 313 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKL 390 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 390 (515)
+..... +.+. .........|+|+|++..|+.++ . +.|..+++. +.....+......
T Consensus 526 ~dG~~~-----~~l~-----------~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~---- 583 (699)
T 1n7d_A 526 LNGVDI-----YSLV-----------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKR---- 583 (699)
T ss_dssp SSSCCC-----CEES-----------CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSS--SSCCEEECCCSSS----
T ss_pred CCCCCe-----eEEE-----------eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccC--CCceEEEEecCCc----
Confidence 643211 1110 00012457899999877666654 3 789999886 3322333211100
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEE
Q 010206 391 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ 450 (515)
Q Consensus 391 ~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~ 450 (515)
+..-..+++..+ .++++....+.|..++..+++ ....+.........+++
T Consensus 584 --------~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~-~~~~i~~~~~~P~~i~v 633 (699)
T 1n7d_A 584 --------LAHPFSLAVFED-KVFWTDIINEAIFSANRLTGS-DVNLLAENLLSPEDMVL 633 (699)
T ss_dssp --------CSSCCCCEEETT-EEEEECSTTTCEEEEETTTEE-EEECCCTTCSSCCCCCB
T ss_pred --------CCCceEeEEECC-EEEEEeCCCCeEEEEEccCCC-ceEEeecCCCCCcEEEE
Confidence 000125666544 455566677899999987663 33444333223334443
No 285
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.53 E-value=0.06 Score=52.83 Aligned_cols=79 Identities=10% Similarity=0.150 Sum_probs=42.0
Q ss_pred CCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEec---CCCCCccccCCccccccCCeeEEEEc
Q 010206 420 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK---GADNSALDANGNAFDFSMKLLHLAWH 496 (515)
Q Consensus 420 dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~---~~~~~~~~~~~~~~~~~~~i~~~~~s 496 (515)
+|.|.-||+.+++.+ -..+... +...-.....+..++.++.|+.++.++ |..++...... ...-.-+.|.
T Consensus 465 ~G~l~A~D~~tG~~~-W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~-----g~~a~P~~y~ 537 (582)
T 1flg_A 465 VGSLRAMDPVSGKVV-WEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS-----GIVSPPITWE 537 (582)
T ss_dssp SEEEEEECTTTCCEE-EEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS-----CCCSCCEEEE
T ss_pred cceEEEEECCCCCEE-EEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCC-----CcccCceEEE
Confidence 688999999988433 3333222 222211222456777799999999833 33344222211 1111236677
Q ss_pred CCCC-EEEEE
Q 010206 497 PSEN-SIACA 505 (515)
Q Consensus 497 ~~~~-~la~~ 505 (515)
.+|+ |+++.
T Consensus 538 ~~G~qYv~~~ 547 (582)
T 1flg_A 538 QDGEQYLGVT 547 (582)
T ss_dssp ETTEEEEEEE
T ss_pred ECCEEEEEEE
Confidence 8887 44443
No 286
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.51 E-value=0.048 Score=48.87 Aligned_cols=183 Identities=7% Similarity=-0.071 Sum_probs=103.0
Q ss_pred EEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceee
Q 010206 248 TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 327 (515)
Q Consensus 248 ~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 327 (515)
+|+.+....|+..|+...+... + ......+..++|++.+..++.+-..++.|..+++............+.
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~-~--------~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~ 73 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTS-L--------IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS 73 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEE-E--------ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC
T ss_pred EEEEECCCeEEEEECCCcceEe-h--------hcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe
Confidence 4556655678999988654321 1 112345789999987635555555678999999875210000000111
Q ss_pred eccCCCccccccccccceeEEEEccCCCEEEEEc-C-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeE
Q 010206 328 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 405 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 405 (515)
........+++++.+..|+..+ . +.|.++++. +.....+...... ....+
T Consensus 74 ------------~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~--g~~~~~~~~~~~~--------------~P~~i 125 (316)
T 1ijq_A 74 ------------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRKTLFRENGS--------------KPRAI 125 (316)
T ss_dssp ------------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT--SSSEEEEEECTTC--------------CEEEE
T ss_pred ------------CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCC--CCceEEEEECCCC--------------CcceE
Confidence 0012357889987666565543 3 899999886 4433333221100 12378
Q ss_pred EEcCCCCEEEEecC-C-CcEEEEecCCCCcceeeeccCCCceeeEEECCCCCee-EeecCCCeEEE
Q 010206 406 CLSGDGGRVATGSY-S-NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSR-PLGSLSGVVRR 468 (515)
Q Consensus 406 ~~s~~~~~l~s~s~-d-g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~d~~v~l 468 (515)
+++|.+..|+.... . +.|...++... .............+.+++++++..| .+-+..+.|..
T Consensus 126 avdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~ 190 (316)
T 1ijq_A 126 VVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 190 (316)
T ss_dssp EEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEE
Confidence 99997666554443 3 68888887632 2222222334567799999876655 44445567766
No 287
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.46 E-value=0.076 Score=53.96 Aligned_cols=183 Identities=7% Similarity=-0.086 Sum_probs=104.9
Q ss_pred EEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceee
Q 010206 248 TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 327 (515)
Q Consensus 248 ~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 327 (515)
+|+.+....|+..++...... .+......+..++|++.+..++++-...+.|+.+++............+
T Consensus 397 ~Ll~an~~~Ir~i~l~~~~~~---------~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi- 466 (791)
T 3m0c_C 397 YLFFTNRHEVRKMTLDRSEYT---------SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI- 466 (791)
T ss_dssp EEEEECBSSEEEECTTSCCCE---------EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-
T ss_pred ccccccccceeEeeccCCcce---------eeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE-
Confidence 455555566887777644321 1122345678999998653555565667889888886532100001111
Q ss_pred eccCCCccccccccccceeEEEEccCCCEEEEEc-C-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeE
Q 010206 328 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 405 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 405 (515)
.........|++.+.++.|+..+ . +.|.+.++. +....++...... ....+
T Consensus 467 -----------~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld--G~~~~~l~~~~l~--------------~P~gI 519 (791)
T 3m0c_C 467 -----------SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRKTLFRENGS--------------KPRAI 519 (791)
T ss_dssp -----------CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT--SSSEEEEEECTTC--------------CEEEE
T ss_pred -----------ecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC--CCeEEEEEeCCCC--------------CcceE
Confidence 11113467899998887777654 3 899999886 4444444322111 12389
Q ss_pred EEcCCCCEEEEec-C-CCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEee-cCCCeEEE
Q 010206 406 CLSGDGGRVATGS-Y-SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG-SLSGVVRR 468 (515)
Q Consensus 406 ~~s~~~~~l~s~s-~-dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~d~~v~l 468 (515)
+++|.+.+|+... . .+.|...++... .....+.......+.|++.+.+..|..+ .....|..
T Consensus 520 aVDp~~g~LYwtD~g~~~~I~~~~~dG~-~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~ 584 (791)
T 3m0c_C 520 VVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 584 (791)
T ss_dssp EEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEecCCCCEEEecCCCCCeEEEEecCCC-ceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEE
Confidence 9999866666544 2 368888888743 3323333444667889999766555444 44556665
No 288
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.46 E-value=0.053 Score=48.03 Aligned_cols=217 Identities=9% Similarity=0.028 Sum_probs=116.9
Q ss_pred cCCeEEEEecCCCCEEE-Ee-CCCcEEEEeCCCCCcccceecccCcccc--cc-CCceEEEEE---ecCCCcEEEEEec-
Q 010206 234 DYHINSISNNSDGETFI-SA-DDLRINLWNLEISNQSFNIVDVKPANME--DL-TEVITSAEF---HPTHCNMLAYSSS- 304 (515)
Q Consensus 234 ~~~v~~~~~~~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~-~~~i~~i~~---~p~~~~~l~~~~~- 304 (515)
.....++.|++....|. +. ..++|..||...+... .+ .+. .+. +. ...+..+.| .|++ +++++...
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~-~~-~~~--~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~~ 86 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHF-NV-VID--GASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKNA 86 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEE-EE-CCT--TTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEET
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEE-EE-ecC--CccccCCCcceeeEEEEeccCCCC-cEEEEEccc
Confidence 34455788987545554 45 6999999998744321 11 110 100 11 123579999 6887 77776442
Q ss_pred ------------CCeEEEEecC---cccccccccceeeeccCCCccccccc-cccceeEEEEccCCCEEEEEcCCeEEEE
Q 010206 305 ------------KGSIRLIDMR---QSALCDTHSKLFEEQEAPGTRSFFTE-IIASISDIKFARNGRHILSRDYMTLKLW 368 (515)
Q Consensus 305 ------------dg~i~~wd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~s~~~~~i~iw 368 (515)
+..+..||+. +++.... .+............+ -......++..++|+..++++.+.=.||
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~----~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~ 162 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWS----VNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIA 162 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEE----EESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEE
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEE----ecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEE
Confidence 6789999998 6654321 110000000000000 0134789999999998888664212355
Q ss_pred EeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeec--cC---CC
Q 010206 369 DINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE--AS---KN 443 (515)
Q Consensus 369 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~--~~---~~ 443 (515)
.+...++.+..+....... ......+.++++|+|+.|++...+|.|..+|+.........+. +. ..
T Consensus 163 rV~pdG~~~~~~~~~~~~~---------~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~ 233 (334)
T 2p9w_A 163 RVSADGKTVSTFAWESGNG---------GQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLS 233 (334)
T ss_dssp EECTTSCCEEEEEECCCCS---------SSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCT
T ss_pred EEeCCCCEEeeeeecCCCc---------ccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCccccc
Confidence 5554455444443221110 0111234899999999888776699999999984321001121 21 12
Q ss_pred ceeeE-EECCCCCe-eEeecCCCeEEE
Q 010206 444 PMRRQ-VQTPSRPS-RPLGSLSGVVRR 468 (515)
Q Consensus 444 ~v~~~-~~~~~~~~-l~s~~~d~~v~l 468 (515)
....+ ....+|+. |++.+..+.+.+
T Consensus 234 ~~dgilp~~~~G~vllV~~~~~~~~~l 260 (334)
T 2p9w_A 234 GTEKIVTVPVGNESVLVGARAPYAISF 260 (334)
T ss_dssp TEEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred CcccccccccCCEEEEEEcCCCCEEEE
Confidence 22332 33356777 555555666555
No 289
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.44 E-value=0.11 Score=51.29 Aligned_cols=370 Identities=12% Similarity=0.005 Sum_probs=178.5
Q ss_pred ccceEEEEECCCCCeEEeec-CCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccc
Q 010206 35 VDIISAIEFDKSGDHLATGD-RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (515)
Q Consensus 35 ~~~v~~v~~s~~g~~lasg~-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (515)
......++|++.+..|..+. ..+.|..+++.+.... ...+...- .
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~----------------------~~v~~~~~------------~ 84 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV----------------------QNVVVSGL------------L 84 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----C----------------------EEEECSSC------------S
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCce----------------------EEEEeCCC------------C
Confidence 44577899998666665554 4677888887643210 00111111 3
Q ss_pred eeEEEEEeecC-CCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 114 KINKIRWCQSA-NSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 114 ~v~~l~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
....|++ +. .+.++++-...+.|.+.++.......+..... ..+..+++.|.+..|
T Consensus 85 ~P~GlAv--D~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l---------------~~P~~Iavdp~~g~l------ 141 (619)
T 3s94_A 85 SPDGLAC--DWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQEL---------------DQPRAIALDPSSGFM------ 141 (619)
T ss_dssp CEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC---------------SCCCCEEEETTTTEE------
T ss_pred CcCeEEE--EecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCC---------------CCCceEEEecCCCeE------
Confidence 4677888 43 33344444667899999998765433332111 012277888765544
Q ss_pred CCCCCCCCCC--CcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcc
Q 010206 193 ASNDSSFPPG--GVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQS 268 (515)
Q Consensus 193 ~~~~~~~~~~--~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~ 268 (515)
+.+. ..+.|...+ .++ ..........-...+.|++++++..|..+ ..+.|...|+......
T Consensus 142 ------y~tD~g~~~~I~r~~-----~dG----~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~ 206 (619)
T 3s94_A 142 ------YWTDWGEVPKIERAG-----MDG----SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ 206 (619)
T ss_dssp ------EEEECSSSCEEEEEE-----TTS----CSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC
T ss_pred ------EEeccCCCCEEEEEE-----CCC----CceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccE
Confidence 2221 123333222 121 11111122234567899999987777776 5788888888743221
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccc---------cceeeeccCCCcccccc
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH---------SKLFEEQEAPGTRSFFT 339 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 339 (515)
.+. .+.......+++..+ .++.+-...+.|...|..+++..... +..+.....+.......
T Consensus 207 -~~~-------~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~ 276 (619)
T 3s94_A 207 -AVV-------KGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCG 276 (619)
T ss_dssp -----------------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTT
T ss_pred -EEE-------eCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCcccccc
Confidence 111 111122346666544 45555556788999998776532111 11111111110000000
Q ss_pred ccccceeEEE-----------EccCC---------------CEEEEEcCCeEEEEEeeCCCCCeeeEeeecccccccccc
Q 010206 340 EIIASISDIK-----------FARNG---------------RHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDL 393 (515)
Q Consensus 340 ~~~~~i~~~~-----------~s~~~---------------~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 393 (515)
...+....++ ..|.| .+|+.+..+.|+..++.........+..
T Consensus 277 ~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~----------- 345 (619)
T 3s94_A 277 IDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQL----------- 345 (619)
T ss_dssp TTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCCEECCC-----------
T ss_pred CCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccceEEEecCCCccceeEEec-----------
Confidence 0000111111 11221 1333333345555555431111111100
Q ss_pred ccCCCccceeeEEEcCCCCEEE-EecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCC-CCeeEeecCCCeEEEe--
Q 010206 394 YENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS-RPSRPLGSLSGVVRRV-- 469 (515)
Q Consensus 394 ~~~~~~~~v~~~~~s~~~~~l~-s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~v~l~-- 469 (515)
..+.....++|++.+..|+ +-...+.|+.+++... .....+.........+++.+. +..+.+-+..+.|.+.
T Consensus 346 ---~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~-~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~ 421 (619)
T 3s94_A 346 ---EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGS-GSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRL 421 (619)
T ss_dssp ---SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ---cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCC-ccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeC
Confidence 1112245789998655555 4456788999998754 222333333455668888864 4455666667778772
Q ss_pred cCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEc
Q 010206 470 KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 506 (515)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~ 506 (515)
+|.... .+.. .--....+++++|...+|..+.
T Consensus 422 ~G~~~~--~l~~---~~l~~P~~iavdp~~G~ly~tD 453 (619)
T 3s94_A 422 NGTMRK--ILIS---EDLEEPRAIVLDPMVGYMYWTD 453 (619)
T ss_dssp TSCSCE--EEEC---TTCCSEEEEEEETTTTEEEEEE
T ss_pred CCCeEE--EEEE---CCCCCeeeEEEEcCCCcEEEec
Confidence 222111 1111 1124568999999755555443
No 290
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.36 E-value=0.083 Score=48.13 Aligned_cols=112 Identities=13% Similarity=0.079 Sum_probs=61.9
Q ss_pred CCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecC---CCcEEEEEec---C---
Q 010206 235 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSS---K--- 305 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~---~~~~l~~~~~---d--- 305 (515)
.....++|.|+++++++-.++.|+++|.. ++ ..+..+. ...........|+++|+ +..++++-+. +
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~~-G~--~~~~~~~--v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISPS-GK--KLVASFD--VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECSS-CE--EEEEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeCC-Cc--eEeeccc--eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 45789999999987777666999998743 32 1111111 11122356889999997 4245454432 3
Q ss_pred -CeEEEEecCcccc-cccccceeeeccCCCccccccccccceeEEEEccCCCEEEE
Q 010206 306 -GSIRLIDMRQSAL-CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 359 (515)
Q Consensus 306 -g~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 359 (515)
..|..|+...... .......+..-.. -..| ....++|.|||.+.++
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~------~~~h--~~~~l~~~pDG~Lyvt 151 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPG------AYIH--NGGRIRFGPDGMLYIT 151 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEEC------CSSC--CCCCEEECTTSCEEEE
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCC------CCCc--CCceEEECCCCcEEEE
Confidence 5677777654310 0000011111000 0112 2467999999987777
No 291
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.36 E-value=0.017 Score=54.42 Aligned_cols=148 Identities=11% Similarity=0.023 Sum_probs=88.3
Q ss_pred ceEEEEEec-CCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-
Q 010206 285 VITSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY- 362 (515)
Q Consensus 285 ~i~~i~~~p-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~- 362 (515)
....++++| ++ ..|+.....+.|+.+|+..+... .+.. .......++|+++|++|+.++.
T Consensus 138 ~P~~lavdp~~~-g~Lyv~d~~~~I~~id~~~~~v~-----~~~~------------~~~~P~~ia~d~~G~~lyvad~~ 199 (430)
T 3tc9_A 138 GAVWLSFDPKNH-NHLYLVGEQHPTRLIDFEKEYVS-----TVYS------------GLSKVRTICWTHEADSMIITNDQ 199 (430)
T ss_dssp CCCEEEEETTEE-EEEEEEEBTEEEEEEETTTTEEE-----EEEC------------CCSCEEEEEECTTSSEEEEEECC
T ss_pred CCCEEEECCCCC-CeEEEEeCCCcEEEEECCCCEEE-----EEec------------CCCCcceEEEeCCCCEEEEEeCC
Confidence 457889998 34 45555555588999998775431 1111 1135788999999996666542
Q ss_pred -C----eEEEEEeeCCCCCe--eeEeeeccccccccccccCCCccceeeEEEcC-CCCEEEEecCCCcEEEEecCCCCcc
Q 010206 363 -M----TLKLWDINMDSGPV--ATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 363 -~----~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
+ .+.+++.. +... ..+..... ...++++| +|.++++-..++.|+.++...+...
T Consensus 200 ~~~~~~~v~~~~~~--g~~~~~~~l~~~~~----------------p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~ 261 (430)
T 3tc9_A 200 NNNDRPNNYILTRE--SGFKVITELTKGQN----------------CNGAETHPINGELYFNSWNAGQVFRYDFTTQETT 261 (430)
T ss_dssp SCTTSEEEEEEEGG--GTSCSEEEEEECSS----------------CCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE
T ss_pred CCcccceEEEEeCC--CceeeeeeeccCCC----------------ceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE
Confidence 2 23333332 3222 22221111 12789999 7777777777889999998865221
Q ss_pred eeeeccCCCceeeEEECCCCCe-eEeecCCCeEEE
Q 010206 435 STTLEASKNPMRRQVQTPSRPS-RPLGSLSGVVRR 468 (515)
Q Consensus 435 ~~~~~~~~~~v~~~~~~~~~~~-l~s~~~d~~v~l 468 (515)
.............++++|++++ +++-.....|..
T Consensus 262 ~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~ 296 (430)
T 3tc9_A 262 PLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILR 296 (430)
T ss_dssp EEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEE
Confidence 1111112234668999999994 455555666666
No 292
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.35 E-value=0.1 Score=48.98 Aligned_cols=128 Identities=5% Similarity=-0.019 Sum_probs=67.7
Q ss_pred eEEEEecCCCCEEEEe--CCCcEEEEeCCCCCccc----ceecc-cCccc------cccCCceEEEEE---------ecC
Q 010206 237 INSISNNSDGETFISA--DDLRINLWNLEISNQSF----NIVDV-KPANM------EDLTEVITSAEF---------HPT 294 (515)
Q Consensus 237 v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~----~~~~~-~~~~~------~~~~~~i~~i~~---------~p~ 294 (515)
-..++|+|+++.|..+ ..+.|+.+++......+ .+... ....+ ...-.....+++ .++
T Consensus 275 ~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~ 354 (433)
T 4hw6_A 275 NFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDE 354 (433)
T ss_dssp CEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCC
T ss_pred cccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCC
Confidence 3579999999966655 57899998875321111 11100 00000 011234678999 666
Q ss_pred CCcEEEEEecCCeEEEEecCcccccccccceeeeccC---CCcc---ccccccccceeEEEEc-cCCCEEEEEcC-CeEE
Q 010206 295 HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA---PGTR---SFFTEIIASISDIKFA-RNGRHILSRDY-MTLK 366 (515)
Q Consensus 295 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~i~~~~~s-~~~~~l~s~~~-~~i~ 366 (515)
+ .++++-...+.|+.++. ++.. ..+-+... .... ......-.....|+++ ++|.++++-.. ++|+
T Consensus 355 g-~lyvaD~~n~~I~~~~~-~G~v-----~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr 427 (433)
T 4hw6_A 355 Y-DFYFCDRDSHTVRVLTP-EGRV-----TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVR 427 (433)
T ss_dssp E-EEEEEETTTTEEEEECT-TSEE-----EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEE
T ss_pred C-cEEEEECCCCEEEEECC-CCCE-----EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEE
Confidence 6 67776667789999985 4432 11211100 0000 0000011346789999 56655555334 7888
Q ss_pred EEEee
Q 010206 367 LWDIN 371 (515)
Q Consensus 367 iwd~~ 371 (515)
.++++
T Consensus 428 ~i~~e 432 (433)
T 4hw6_A 428 KIAPE 432 (433)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 88764
No 293
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.34 E-value=0.037 Score=48.98 Aligned_cols=174 Identities=9% Similarity=0.068 Sum_probs=99.1
Q ss_pred CCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEE---ccCCCEEEE
Q 010206 283 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF---ARNGRHILS 359 (515)
Q Consensus 283 ~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---s~~~~~l~s 359 (515)
.....+++|++..+.++++.-..+.|..||...+.... . .+.....+. .....+..+.| .|+++++++
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~--~-~~~~~s~~g------~~~~~~sGl~~~~~D~~grL~vv 82 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFN--V-VIDGASSNG------DGEQQMSGLSLLTHDNSKRLFAV 82 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEE--E-CCTTTCCSS------CCSEEEEEEEESSSSSCCEEEEE
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEE--E-ecCCccccC------CCcceeeEEEEeccCCCCcEEEE
Confidence 34455789998663555555479999999987543211 1 111100000 00023578999 688888885
Q ss_pred Ec--------------CCeEEEEEee---CCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCC-C
Q 010206 360 RD--------------YMTLKLWDIN---MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-N 421 (515)
Q Consensus 360 ~~--------------~~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d-g 421 (515)
.. +..|..||+. + ++.+........... ..... .........++..++|+..++++.. +
T Consensus 83 ~~~~~af~~~g~~~~g~~~v~~~Dl~~~~t-g~~~~~~dL~~~~~~-~~~~~-g~~~~~~nDvavD~~GnaYVt~s~~~~ 159 (334)
T 2p9w_A 83 MKNAKSFNFADQSSHGASSFHSFNLPLSEN-SKPVWSVNFEKVQDE-FEKKA-GKRPFGVVQSAQDRDGNSYVAFALGMP 159 (334)
T ss_dssp EEETTTTCTTSCCSSSCCEEEEEESSCCTT-CCCSEEEESHHHHHH-HHHHH-SSCCEEEEEEEECTTSCEEEEEEESSC
T ss_pred EcccccccccccccCCCCEEEEEcCCcCCC-CCEEEEecCcccccc-ccccc-cccccCCceeEECCCCCEEEeCCCCCC
Confidence 43 3678899987 5 455444332110000 00000 0001113489999999999998887 7
Q ss_pred cEEEEecCCCCcceeeec--c----CCCceeeEEECCCCCeeEeecCCCeEEEec
Q 010206 422 LFRVFGCSEGSAESTTLE--A----SKNPMRRQVQTPSRPSRPLGSLSGVVRRVK 470 (515)
Q Consensus 422 ~i~iw~~~~~~~~~~~~~--~----~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~ 470 (515)
.|...+.... ....+. . ..-..+.++++|++..|+....++.+..++
T Consensus 160 ~I~rV~pdG~--~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD 212 (334)
T 2p9w_A 160 AIARVSADGK--TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFD 212 (334)
T ss_dssp EEEEECTTSC--CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEE
T ss_pred eEEEEeCCCC--EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEc
Confidence 7777666532 222221 1 112256899999999887776687776633
No 294
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.27 E-value=0.096 Score=46.89 Aligned_cols=158 Identities=11% Similarity=0.051 Sum_probs=93.6
Q ss_pred CCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEe--cCCeEEE
Q 010206 235 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--SKGSIRL 310 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~--~dg~i~~ 310 (515)
.....+++.+.+..|..+ ..+.|.++++...... .+ ..........+++.|.+ ..|+... ..+.|..
T Consensus 79 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~-~l-------~~~~~~~P~giavdp~~-g~ly~td~~~~~~I~r 149 (318)
T 3sov_A 79 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK-VL-------FWQELDQPRAIALDPSS-GFMYWTDWGEVPKIER 149 (318)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EE-------ECSSCSSEEEEEEEGGG-TEEEEEECSSSCEEEE
T ss_pred CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE-EE-------EeCCCCCccEEEEeCCC-CEEEEEecCCCCEEEE
Confidence 356688898755555544 5789999998743221 11 11234557899999976 3455444 2577888
Q ss_pred EecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--CeEEEEEeeCCCCCeeeEeeeccccc
Q 010206 311 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRP 388 (515)
Q Consensus 311 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~ 388 (515)
.++..... ..+-. ..-.....++++|++..|+.++. +.|..+|+. +.....+.... .
T Consensus 150 ~~~dG~~~-----~~~~~-----------~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d--G~~~~~~~~~~-~-- 208 (318)
T 3sov_A 150 AGMDGSSR-----FIIIN-----------SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD--GTNRQAVVKGS-L-- 208 (318)
T ss_dssp EETTSCSC-----EEEEC-----------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEECSC-C--
T ss_pred EEcCCCCe-----EEEEE-----------CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCC--CCceEEEecCC-C--
Confidence 88753221 11100 00134688999998777777653 889999986 33333332111 0
Q ss_pred cccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc
Q 010206 389 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 389 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
..-..+++. .+.++.+-...+.|..++..+++..
T Consensus 209 -----------~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~ 242 (318)
T 3sov_A 209 -----------PHPFALTLF-EDILYWTDWSTHSILACNKYTGEGL 242 (318)
T ss_dssp -----------SCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred -----------CCceEEEEe-CCEEEEEecCCCeEEEEECCCCCce
Confidence 001267775 3445556667789999998777443
No 295
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.24 E-value=0.13 Score=47.81 Aligned_cols=184 Identities=7% Similarity=-0.088 Sum_probs=105.5
Q ss_pred CEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCccccccccccee
Q 010206 247 ETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF 326 (515)
Q Consensus 247 ~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 326 (515)
.+|+.+....|+..++....... +......+..++|++.+..++.+-...+.|+.+++.............
T Consensus 84 ~~ll~~~~~~I~~i~l~~~~~~~---------~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~ 154 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRSEYTS---------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI 154 (400)
T ss_dssp CEEEEEETTEEEEECTTSCSCEE---------EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE
T ss_pred ceeEEeccceeEEEccCCcceeE---------eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE
Confidence 45555666788888887543221 112345678999998763455555567889888886532100000111
Q ss_pred eeccCCCccccccccccceeEEEEccCCCEEEEEc-C-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceee
Q 010206 327 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE 404 (515)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 404 (515)
.........+++.+.+..|+..+ . +.|.+.++. +.....+...... ....
T Consensus 155 ------------~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~--g~~~~~l~~~~~~--------------~P~~ 206 (400)
T 3p5b_L 155 ------------SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRKTLFRENGS--------------KPRA 206 (400)
T ss_dssp ------------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT--TCSEEEEEECSSC--------------CEEE
T ss_pred ------------eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC--CCceEEEEeCCCC--------------Ccce
Confidence 11113567899988555565543 3 888888876 4444433321111 1237
Q ss_pred EEEcCCCCEEEEec--CCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEee-cCCCeEEE
Q 010206 405 CCLSGDGGRVATGS--YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG-SLSGVVRR 468 (515)
Q Consensus 405 ~~~s~~~~~l~s~s--~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~d~~v~l 468 (515)
++++|.+.+|+... ..+.|...++... .....+.......+.+++++++..|..+ .....|..
T Consensus 207 iavdp~~g~ly~td~~~~~~I~~~~~dG~-~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~ 272 (400)
T 3p5b_L 207 IVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 272 (400)
T ss_dssp EEEETTTTEEEEEECSSSCCEEEEETTSC-SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEecccCeEEEEeCCCCCEEEEEeCCCC-ccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEE
Confidence 99999766665444 2478888888743 3322333444567899999876655444 44566666
No 296
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.22 E-value=0.11 Score=46.57 Aligned_cols=192 Identities=7% Similarity=-0.084 Sum_probs=109.9
Q ss_pred CeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEec
Q 010206 236 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 313 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~ 313 (515)
.+..++|++.+..|..+ ..+.|..+++........+ +...-.....+++.+.+.+++.+-...+.|.++++
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~-------~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~ 108 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV-------VVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNL 108 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEE-------EEECCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEE-------EcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEEC
Confidence 45688999865555554 6889999998755321111 11122346789999755356666666789999998
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc--C-CeEEEEEeeCCCCCeeeEeeeccccccc
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y-MTLKLWDINMDSGPVATFQVHEHLRPKL 390 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 390 (515)
..... ..+.. ........+++.|.+..|+..+ . +.|...++. +.....+....
T Consensus 109 dG~~~-----~~l~~-----------~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~~~------ 164 (318)
T 3sov_A 109 DGSLR-----KVLFW-----------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD--GSSRFIIINSE------ 164 (318)
T ss_dssp TSCSC-----EEEEC-----------SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT--SCSCEEEECSS------
T ss_pred CCCcE-----EEEEe-----------CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC--CCCeEEEEECC------
Confidence 64321 11110 1113468899998766666544 2 677777665 44333332111
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEe-cCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 391 CDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 391 ~~~~~~~~~~~v~~~~~s~~~~~l~s~-s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+..-..+++++++..|+.+ +..+.|..+++... ...............+++. .+..+.+-...+.|..
T Consensus 165 --------l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~ 233 (318)
T 3sov_A 165 --------IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT-NRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILA 233 (318)
T ss_dssp --------CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred --------CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC-ceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEE
Confidence 0112379999977666544 56788999998743 3322333233444566664 3344445444555554
No 297
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.17 E-value=0.11 Score=45.70 Aligned_cols=172 Identities=13% Similarity=0.100 Sum_probs=93.5
Q ss_pred CCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEec-------CCe
Q 010206 235 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-------KGS 307 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~-------dg~ 307 (515)
..|.-=.|-.+ +.|+-..+..|+-|++.....+.++.+..+ .+. ...|..-..+++. ++++..+- .|.
T Consensus 107 e~VvfWkWis~-~~L~lVT~taVyHWs~~~~s~P~kvFdR~~-~L~--~~QIInY~~d~~~-kW~~l~GI~~~~~~v~G~ 181 (365)
T 2xzh_A 107 DDVTFWKWISL-NTVALVTDNAVYHWSMEGESQPVKMFDRHS-SLA--GCQIINYRTDAKQ-KWLLLTGISAQQNRVVGA 181 (365)
T ss_dssp SCEEEEEECSS-SEEEEEESSEEEEEESSTTCCCEEEEECCG-GGT--TCEEEEEEECTTS-CEEEEEEEEEETTEEEEE
T ss_pred CccEEEEecCC-CeEEEEcCCcEEEEcccCCCCCceeeecch-hcc--cceEEEEEECCCC-CEEEEEeEeccCCcccee
Confidence 44554455433 345555667899999986555555544322 332 4667788888887 55544332 367
Q ss_pred EEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccC---CCEEEEEc---C-CeEEEEEeeCC--CCCee
Q 010206 308 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN---GRHILSRD---Y-MTLKLWDINMD--SGPVA 378 (515)
Q Consensus 308 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~s~~---~-~~i~iwd~~~~--~~~~~ 378 (515)
+.+|..+.+.. ..+.+|.+....+.+.-+ .++++.+. . ++++|-++..+ +.+..
T Consensus 182 mQLYS~er~~s-----------------Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f 244 (365)
T 2xzh_A 182 MQLYSVDRKVS-----------------QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF 244 (365)
T ss_dssp EEEEETTTTEE-----------------EEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCC
T ss_pred EEEEeeccccc-----------------ceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCc
Confidence 78888766531 124444444433333211 11223222 2 68999998642 11111
Q ss_pred eEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc
Q 010206 379 TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
..+.-+-. .+.-..+| ++| ++..|+.-..+..-+.-|.|++||++++.++
T Consensus 245 ~kk~vdi~---fppea~~D--FPV-amqvs~kygviyviTK~G~ihlyDleTgt~i 294 (365)
T 2xzh_A 245 PKKAVDVF---FPPEAQND--FPV-AMQISEKHDVVFLITKYGYIHLYDLETGTCI 294 (365)
T ss_dssp CCEEEEEC---CCTTCTTC--CEE-EEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred ccccceee---CCccccCC--ceE-EEEecccCCEEEEEeCCcEEEEEEcccCcEE
Confidence 11100000 00000111 112 6788888888888889999999999999544
No 298
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.13 E-value=0.14 Score=46.12 Aligned_cols=236 Identities=11% Similarity=0.044 Sum_probs=121.9
Q ss_pred cCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEec
Q 010206 234 DYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 313 (515)
Q Consensus 234 ~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~ 313 (515)
...+.++.+.+++..++++..+.|. .... +....+.+.. ........+.++.|.+ + ..++. +.++.|. -.
T Consensus 35 ~~~~~~v~~~~~~~~~~~G~~g~i~-~s~D-gG~tW~~~~~---~~~~~~~~~~~i~~~~-~-~~~~~-g~~g~i~--~S 104 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLVGVNATLM-ETRD-GGQTWEPRTL---VLDHSDYRFNSVSFQG-N-EGWIV-GEPPIML--HT 104 (327)
T ss_dssp SSCEEEEEESSSSCEEEEETTTEEE-EESS-TTSSCEECCC---CCSCCCCEEEEEEEET-T-EEEEE-EETTEEE--EE
T ss_pred CCcEEEEEECCCCcEEEEcCCCeEE-EeCC-CCCCCeECCC---CCCCCCccEEEEEecC-C-eEEEE-ECCCeEE--EE
Confidence 3578899998888888877777653 3333 2222211100 1111244688999987 4 45554 4556443 23
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeecccccccccc
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDL 393 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 393 (515)
..+- +++...... ..+...+..+.+.++++.++++..+.| |.....++.-........
T Consensus 105 ~DgG------~tW~~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~g~v--~~S~DgG~tW~~~~~~~~-------- 162 (327)
T 2xbg_A 105 TDGG------QSWSQIPLD------PKLPGSPRLIKALGNGSAEMITNVGAI--YRTKDSGKNWQALVQEAI-------- 162 (327)
T ss_dssp SSTT------SSCEECCCC------TTCSSCEEEEEEEETTEEEEEETTCCE--EEESSTTSSEEEEECSCC--------
T ss_pred CCCC------CCceECccc------cCCCCCeEEEEEECCCCEEEEeCCccE--EEEcCCCCCCEEeecCCC--------
Confidence 3321 112211100 011134667777777777777766543 332222333222221100
Q ss_pred ccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEe--cC
Q 010206 394 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRV--KG 471 (515)
Q Consensus 394 ~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~--~~ 471 (515)
..+..+++.+++.+++.+...+..+-+|-....... .-......+..+++.+++..++.+ .+|.+++. ++
T Consensus 163 ------~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~-~~~~~~~~~~~~~~~~~g~~~~~~-~~G~~~~s~~D~ 234 (327)
T 2xbg_A 163 ------GVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEP-HNRTTSRRLHNMGFTPDGRLWMIV-NGGKIAFSDPDN 234 (327)
T ss_dssp ------CCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEE-EECCSSSCEEEEEECTTSCEEEEE-TTTEEEEEETTE
T ss_pred ------cceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeE-CCCCCCCccceeEECCCCCEEEEe-CCceEEEecCCC
Confidence 014578999999988777554444444421111111 112344567788888988766554 46776663 22
Q ss_pred CCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcE
Q 010206 472 ADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSL 510 (515)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~ 510 (515)
.+.+.. +....+.....+.++++.+++..++++....+
T Consensus 235 G~tW~~-~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i 272 (327)
T 2xbg_A 235 SENWGE-LLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL 272 (327)
T ss_dssp EEEECC-CBCTTSSCCSCEEEEEESSSSCEEEEESTTCE
T ss_pred CCeeEe-ccCCcccCCcceEEEEecCCCEEEEEeCCCeE
Confidence 333311 11000112345889999998888888775545
No 299
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.07 E-value=0.28 Score=48.52 Aligned_cols=100 Identities=15% Similarity=0.079 Sum_probs=58.5
Q ss_pred eeeEEEcCCCCEE-EEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCC-CCeeEeecCCC--eEEE--ecCCCCC
Q 010206 402 KFECCLSGDGGRV-ATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS-RPSRPLGSLSG--VVRR--VKGADNS 475 (515)
Q Consensus 402 v~~~~~s~~~~~l-~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~--~v~l--~~~~~~~ 475 (515)
...+++...++.| ++-+..+.|.+.++. ++.....+.......+.+++.|. |..+.+-.... .|.. .+|....
T Consensus 391 p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~ 469 (628)
T 4a0p_A 391 PYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTERE 469 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCE
T ss_pred cceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcE
Confidence 3489999886655 466678899999986 32332233344567889999995 44444432222 3433 3333221
Q ss_pred ccccCCccccccCCeeEEEEcCCCCEEEEEcC
Q 010206 476 ALDANGNAFDFSMKLLHLAWHPSENSIACAAS 507 (515)
Q Consensus 476 ~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~ 507 (515)
.+.. ..-...+.++++++.+.|..+..
T Consensus 470 --~l~~---~~l~~P~gla~D~~~~~LYw~D~ 496 (628)
T 4a0p_A 470 --VLFF---SGLSKPIALALDSRLGKLFWADS 496 (628)
T ss_dssp --EEEC---SSCSCEEEEEEETTTTEEEEEET
T ss_pred --EEEe---ccCCCccEEEEeCCCCEEEEEeC
Confidence 0111 01234588999998888876654
No 300
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.01 E-value=0.099 Score=47.86 Aligned_cols=164 Identities=12% Similarity=0.123 Sum_probs=98.8
Q ss_pred EecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccc--cCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccc
Q 010206 241 SNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMED--LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL 318 (515)
Q Consensus 241 ~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~ 318 (515)
....++..++.+.++.||.-++.... .++.+. ... .-..|..+..+|+| .+||..+ +..|.|-.+..+..
T Consensus 27 ~~~~n~t~i~~a~~n~iR~~~i~~~~-~Yk~L~-----~~~~i~f~~i~qlvlSpsG-~lLAl~g-~~~V~Vv~LP~~~~ 98 (452)
T 3pbp_A 27 FSSQNGTRIVFIQDNIIRWYNVLTDS-LYHSLN-----FSRHLVLDDTFHVISSTSG-DLLCLFN-DNEIFVMEVPWGYS 98 (452)
T ss_dssp EEETTTTEEEEEETTEEEEEETTTCS-SCEEEE-----CTTTCCCCTTCEEEECTTS-SEEEEEC-SSEEEEEECCTTCS
T ss_pred EEEcCCCEEEEEECCEEEEEECCCCC-cceEEe-----cCcccccCceeEEEECCCC-CEEEEec-CCeEEEEEecCccc
Confidence 34567888888888999988887443 344332 121 12257889999999 7888764 55889988874321
Q ss_pred ccc--------ccceeeeccCCCccccccccccceeEEEEcc---CCCEEEE-EcCCeEEEEEeeCC-CCCeeeEeeecc
Q 010206 319 CDT--------HSKLFEEQEAPGTRSFFTEIIASISDIKFAR---NGRHILS-RDYMTLKLWDINMD-SGPVATFQVHEH 385 (515)
Q Consensus 319 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~s-~~~~~i~iwd~~~~-~~~~~~~~~~~~ 385 (515)
... ..+.+..... ......+|..+.|+| .+..|++ -+++.|++||+... .++. .+.....
T Consensus 99 ~~~~~~~~~~~q~~ty~l~~~------~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~ 171 (452)
T 3pbp_A 99 NVEDVSIQDAFQIFHYSIDEE------EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNN 171 (452)
T ss_dssp CCCCHHHHHTTEEEEEEGGGC------C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCS
T ss_pred cCcccccccccceeEEEcCCc------ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhcccc
Confidence 111 0112222110 011246899999999 3456666 45699999999852 2333 3321110
Q ss_pred ccccccccccCCCccceeeEEEcCCCCEEEE--ecCCCcEEE
Q 010206 386 LRPKLCDLYENDSIFDKFECCLSGDGGRVAT--GSYSNLFRV 425 (515)
Q Consensus 386 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s--~s~dg~i~i 425 (515)
.+.......+|.+++|++++-.|.. .+.+|.|+-
T Consensus 172 ------~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 172 ------SFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp ------EEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred ------ccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 1111233355779999998876666 458888864
No 301
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.82 E-value=0.27 Score=44.46 Aligned_cols=71 Identities=10% Similarity=0.128 Sum_probs=44.2
Q ss_pred CceEEEEEecCCCcEEEEEecCCeEEEEecCc-ccccccccceeeeccCCCccccccccccceeEEEEcc-CCCEEEEEc
Q 010206 284 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRD 361 (515)
Q Consensus 284 ~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~ 361 (515)
...+.++|+||+..++++-+..+.|..|++.. +.+.. .+.+.. .+....+++.+ +|++.+++.
T Consensus 221 ~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~--~~~~~~-------------~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 221 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTP--LRVLSF-------------DTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE--EEEEEC-------------SSEEEEEEECTTTCCEEEEEE
T ss_pred cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEec--CEEEeC-------------CCCCceEEEeCCCCcEEEEec
Confidence 45689999999844444455678999999863 22211 122211 14567889998 599888654
Q ss_pred -C-CeEEEEE
Q 010206 362 -Y-MTLKLWD 369 (515)
Q Consensus 362 -~-~~i~iwd 369 (515)
+ +.|..|+
T Consensus 286 ~~g~~v~~~~ 295 (355)
T 3sre_A 286 PNGMRIFFYD 295 (355)
T ss_dssp SCHHHHHSCC
T ss_pred CCceEEEEEC
Confidence 3 4444444
No 302
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.75 E-value=0.0094 Score=59.98 Aligned_cols=182 Identities=7% Similarity=-0.080 Sum_probs=94.7
Q ss_pred EEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeee
Q 010206 249 FISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 328 (515)
Q Consensus 249 l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 328 (515)
|+.+....|+..++....... +......+..++|++.+..++++-...+.|+.+++............+
T Consensus 380 ll~~~~~~I~~id~~~~~~~~---------~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i-- 448 (699)
T 1n7d_A 380 LFFTNRHEVRKMTLDRSEYTS---------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-- 448 (699)
T ss_dssp BCCCCTTC-CEECTTSCCEEC---------CSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC--
T ss_pred EEecCccceEEEeCCCCccee---------eeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE--
Confidence 333444567777776543221 111223467889998762444444456789988886511000000000
Q ss_pred ccCCCccccccccccceeEEEEccCCCEEEEEc-C-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEE
Q 010206 329 QEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC 406 (515)
Q Consensus 329 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 406 (515)
.........|++.+.+..|+..+ . +.|.++++. +.....+...... ....++
T Consensus 449 ----------~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~d--g~~~~~l~~~~~~--------------~P~gia 502 (699)
T 1n7d_A 449 ----------SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRKTLFREQGS--------------KPRAIV 502 (699)
T ss_dssp ----------CSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSS--SCCEEEECCCSSC--------------CCCCEE
T ss_pred ----------eCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecC--CCceEEEEeCCCC--------------CcceEE
Confidence 00012345678886555555443 3 789888876 3333333211100 012789
Q ss_pred EcCCCCEEEEec-C-CCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCe-eEeecCCCeEEE
Q 010206 407 LSGDGGRVATGS-Y-SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPS-RPLGSLSGVVRR 468 (515)
Q Consensus 407 ~s~~~~~l~s~s-~-dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~d~~v~l 468 (515)
++|++.+|+... . .+.|..+++... .....+.......+.++++|++.. +++-+..+.|..
T Consensus 503 vDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~ 566 (699)
T 1n7d_A 503 VDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 566 (699)
T ss_dssp CCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEE
T ss_pred EccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEE
Confidence 998766555443 2 368888887633 221222233445678999987554 455555667776
No 303
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.63 E-value=0.35 Score=43.23 Aligned_cols=159 Identities=6% Similarity=0.103 Sum_probs=84.5
Q ss_pred CCcEEEEeCCCCCcccceecccCccccccCCceEEEEE--ecCCCc-EEEEEecCCeEEEEecC---cccccccccceee
Q 010206 254 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF--HPTHCN-MLAYSSSKGSIRLIDMR---QSALCDTHSKLFE 327 (515)
Q Consensus 254 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~--~p~~~~-~l~~~~~dg~i~~wd~~---~~~~~~~~~~~~~ 327 (515)
+++|.+|++.........+......+..-...++.+++ +|.... +++....+|.+..|++. .+....+.++.|.
T Consensus 98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~ 177 (355)
T 3amr_A 98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK 177 (355)
T ss_dssp CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence 68899997742221221110000000011145677787 675423 67778889999999984 3323333344444
Q ss_pred eccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCC----CCeeeEeeeccccccccccccCCCccce
Q 010206 328 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDS----GPVATFQVHEHLRPKLCDLYENDSIFDK 402 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v 402 (515)
.. +.+..+...+....|+.+.. ..|..++.+... +.+..+. ... ...++
T Consensus 178 lg-------------sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~-~g~------------l~aDv 231 (355)
T 3amr_A 178 MN-------------SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD-GRH------------LTRDI 231 (355)
T ss_dssp CS-------------SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS-SSS------------BCSCE
T ss_pred CC-------------CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec-CCc------------cccCc
Confidence 32 35778889988888888876 335444433211 1121111 010 11124
Q ss_pred eeEEE--cCCCC-EEEEec-CCCcEEEEecCCCCcceeee
Q 010206 403 FECCL--SGDGG-RVATGS-YSNLFRVFGCSEGSAESTTL 438 (515)
Q Consensus 403 ~~~~~--s~~~~-~l~s~s-~dg~i~iw~~~~~~~~~~~~ 438 (515)
..+++ .++++ ||++.+ .++++.+||.+.....+..+
T Consensus 232 EGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 232 EGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred ceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 46666 56666 666555 67799999997332333333
No 304
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.60 E-value=0.24 Score=46.92 Aligned_cols=155 Identities=12% Similarity=0.003 Sum_probs=89.8
Q ss_pred ceEEEEEecC-CCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEE-------ccCCCE
Q 010206 285 VITSAEFHPT-HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF-------ARNGRH 356 (515)
Q Consensus 285 ~i~~i~~~p~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------s~~~~~ 356 (515)
....|+|+|. +.+++++-...+.|++.|+..+.+. .+-... .........++| +++|+.
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~-----~l~~~~--------~~~~~~p~~ia~~~~~~~~d~~G~~ 206 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLS-----SPLNIN--------TIPTNRIRSIAFNKKIEGYADEAEY 206 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEE-----EEECCT--------TSSCSBEEEEEECCCBTTTBCTTCE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEE-----EEEccC--------ccccCCCcEEEEeecccccCCCCCE
Confidence 4689999983 4255555555577999998876542 111100 001135789999 999997
Q ss_pred EEEEcC-C-------eEEEEEeeCCCCCe-----eeEeeeccccccccccccCCCccceeeEEEcCC-CCEEEEecCCCc
Q 010206 357 ILSRDY-M-------TLKLWDINMDSGPV-----ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD-GGRVATGSYSNL 422 (515)
Q Consensus 357 l~s~~~-~-------~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~s~dg~ 422 (515)
|+.+++ + .|.+++....+... ..+..-.. ...++++|+ +.++++-..++.
T Consensus 207 lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~----------------p~giavdp~~g~LYvtd~~~g~ 270 (496)
T 3kya_A 207 MIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQ----------------CNGATIHPINGELYFNSYEKGQ 270 (496)
T ss_dssp EEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESC----------------CCCEEECTTTCCEEEEETTTTE
T ss_pred EEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCC----------------ceEEEEcCCCCeEEEEECCCCE
Confidence 777654 3 25555533212221 12211110 127899995 555556667888
Q ss_pred EEEEecC-------CCCc------c----eee-ec-cCCCceeeEEECCCCCe-eEeecCCCeEEE
Q 010206 423 FRVFGCS-------EGSA------E----STT-LE-ASKNPMRRQVQTPSRPS-RPLGSLSGVVRR 468 (515)
Q Consensus 423 i~iw~~~-------~~~~------~----~~~-~~-~~~~~v~~~~~~~~~~~-l~s~~~d~~v~l 468 (515)
|+.+|+. ++.. . ... +. ........++++|++.+ +++-+....|+.
T Consensus 271 V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~k 336 (496)
T 3kya_A 271 VFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMR 336 (496)
T ss_dssp EEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEE
Confidence 9999997 4432 0 111 11 22344578999999995 444455566665
No 305
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.42 E-value=0.83 Score=45.10 Aligned_cols=143 Identities=11% Similarity=-0.056 Sum_probs=80.7
Q ss_pred ceeEEEEccCCCEEEEEc-C-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCC-EEEEecCC
Q 010206 344 SISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYS 420 (515)
Q Consensus 344 ~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~s~d 420 (515)
.+.+++|.+.+..|+..+ . +.|..+++.. .....+.... . .....++++..++ +.++-+..
T Consensus 350 ~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g--~~~~~v~~~~-~-------------~~p~GlAvD~~~~~lY~tD~~~ 413 (619)
T 3s94_A 350 HAIAIDYDPVEGYIYWTDDEVRAIRRSFIDG--SGSQFVVTAQ-I-------------AHPDGIAVDWVARNLYWTDTGT 413 (619)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECSS-C-------------SCCCEEEEETTTTEEEEEETTT
T ss_pred ccEEEEEEcCCCeEEEEeCCCCeEEEEEcCC--CccEEEEECC-C-------------CCcCceEEecccCcEEEEeCCC
Confidence 467899998666666554 3 8888888763 2222222111 0 0123789987544 55565677
Q ss_pred CcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecC--CCeEEE--ecCCCCCccccCCccccccCCeeEEEEc
Q 010206 421 NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL--SGVVRR--VKGADNSALDANGNAFDFSMKLLHLAWH 496 (515)
Q Consensus 421 g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--d~~v~l--~~~~~~~~~~~~~~~~~~~~~i~~~~~s 496 (515)
+.|.+.++... .....+.......+.+++.|....|.-... ...|.. .+|.... .+.. ..-...+.++++
T Consensus 414 ~~I~v~~~~G~-~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~--~l~~---~~l~~P~GlalD 487 (619)
T 3s94_A 414 DRIEVTRLNGT-MRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRV--VLVN---TSLGWPNGLALD 487 (619)
T ss_dssp TEEEEEETTSC-SCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE--EEEC---SSCSCEEEEEEE
T ss_pred CcEEEEeCCCC-eEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccE--EEEe---CCCCCCeeeEEc
Confidence 89999998744 332223344566789999987444433332 234443 2332211 0110 012356789999
Q ss_pred CCCCEEEEEcCC
Q 010206 497 PSENSIACAASN 508 (515)
Q Consensus 497 ~~~~~la~~~~~ 508 (515)
+++..|..+...
T Consensus 488 ~~~~~LY~aD~~ 499 (619)
T 3s94_A 488 YDEGKIYWGDAK 499 (619)
T ss_dssp TTTTEEEEEETT
T ss_pred ccCCEEEEEECC
Confidence 988887766543
No 306
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.17 E-value=0.38 Score=39.69 Aligned_cols=114 Identities=12% Similarity=0.027 Sum_probs=63.6
Q ss_pred CCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccc--cccCCceEEEEEecCCCcEEEEEecCCeEEEEe
Q 010206 235 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANM--EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 312 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd 312 (515)
..+..++|+|++.+.+. .+|.+.-.+..+.... ..... ...+ .+-.. -..+.|.|+| .+.++ .||.|.-++
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~-~W~~s-~t~IG~~Gw~~-F~a~~fD~~G-~LYav--~dG~iyr~~ 113 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDND-NWMGR-AKKIGNGGWNQ-FQFLFFDPNG-YLYAV--SKDKLYKAS 113 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTC-CHHHH-CEEEECSCGGG-CSEEEECTTS-CEEEE--ETTEEEEES
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCCCCCcc-ccccc-ccEeccccccc-ceEEEECCCC-CEEEe--CCCEEEEeC
Confidence 36779999999998777 7777666665432211 00000 0000 01111 3688999998 66665 669888777
Q ss_pred cCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeE
Q 010206 313 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTL 365 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i 365 (515)
-.+.... .+-... ..+-.+--..+..|.|.|+|.+.+.. ++.+
T Consensus 114 pP~~~~~-----~Wl~~a----~~vg~~gw~~~~~lff~p~G~Lyav~-dg~l 156 (236)
T 1tl2_A 114 PPQSDTD-----NWIARA----TEVGSGGWSGFKFLFFHPNGYLYAVH-GQQF 156 (236)
T ss_dssp CCCSTTC-----CHHHHS----EEEECSSGGGEEEEEECTTSCEEEEE-TTEE
T ss_pred CCcCCCC-----ceeccc----cEeccCCCCceEEEEECCCceEEEEe-CCcE
Confidence 5332110 000000 00000011357999999999988888 7664
No 307
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.17 E-value=0.78 Score=42.20 Aligned_cols=173 Identities=13% Similarity=0.088 Sum_probs=94.6
Q ss_pred CeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEec-------CCeE
Q 010206 236 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-------KGSI 308 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~-------dg~i 308 (515)
.|.-=.|-. .+.|+-..+..|+-|++.....+.++.+..+ .+. ...|..-..+++. ++++..+- .|.+
T Consensus 107 ~VvfWkWis-~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~-~L~--~~QIInY~~d~~~-kW~~l~GI~~~~~~v~G~m 181 (494)
T 1bpo_A 107 DVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRHS-SLA--GCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAM 181 (494)
T ss_dssp CCCEEEEEE-TTEEEEECSSEEEEEESSSSCCCEEEEECCG-GGT--TCEEEEEEECTTS-SEEEEEEEEEETTEEEEEE
T ss_pred CceEEEecC-CCeEEEEcCCeeEEecccCCCCchhheecch-hcc--cceEEEEEECCCC-CeEEEEeecccCCcccceE
Confidence 444444432 3355555778899999986555555544322 332 4667788888888 55553332 4678
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccC---CCEEEEEc----CCeEEEEEeeCCCCCeeeEe
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN---GRHILSRD----YMTLKLWDINMDSGPVATFQ 381 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~s~~----~~~i~iwd~~~~~~~~~~~~ 381 (515)
.+|..+.+.. ..+.||.+....+.+.-+ ..+++.+. .++++|-++..+...-..+.
T Consensus 182 QLYS~er~~s-----------------Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~ 244 (494)
T 1bpo_A 182 QLYSVDRKVS-----------------QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP 244 (494)
T ss_dssp EEEESTTCCE-----------------EEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCC
T ss_pred EEeecccccc-----------------chheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCcc
Confidence 8888766531 124555555544444321 11222232 27899999864211111111
Q ss_pred eeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc
Q 010206 382 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
....... .+.-..+| ++| ++..|+.-..+..-+.-|.|++||++++.++
T Consensus 245 kk~vdv~-fppe~~~D--FPv-amqvs~kygviyviTK~G~i~lyDleTgt~i 293 (494)
T 1bpo_A 245 KKAVDVF-FPPEAQND--FPV-AMQISEKHDVVFLITKYGYIHLYDLETGTCI 293 (494)
T ss_dssp CEEEECC-CCTTSTTC--CEE-EEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred ceeeeee-CCcccccC--cee-EEEecccCCEEEEEecCceEEEEecccceee
Confidence 0000000 00001111 112 6788888888888889999999999999544
No 308
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.15 E-value=0.18 Score=46.18 Aligned_cols=126 Identities=11% Similarity=0.200 Sum_probs=79.3
Q ss_pred CeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccc-----------eecccCccccccCCceEEEEEecCCC--cEEEEE
Q 010206 236 HINSISNNSDGETFISADDLRINLWNLEISNQSFN-----------IVDVKPANMEDLTEVITSAEFHPTHC--NMLAYS 302 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~-----------~~~~~~~~~~~~~~~i~~i~~~p~~~--~~l~~~ 302 (515)
.|..+..+|+|.+||...+..|.|-.+..+..... ...+.+.. .....+|..+.|+|-+. ..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~-~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEE-VGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC---CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcc-cCCCCceeEEEeccccCCCCeEEEE
Confidence 56779999999999998888999998874321110 11111110 11357899999999652 488999
Q ss_pred ecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc--C-CeEEEE
Q 010206 303 SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y-MTLKLW 368 (515)
Q Consensus 303 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~-~~i~iw 368 (515)
..|+.|++||+..... +.. .++... ...-+......|.+++|.+++-.|...+ + |.|+-.
T Consensus 146 tsD~~Ir~yDl~~s~~--~P~-~L~k~~---~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 146 KEDDTITMFDILNSQE--KPI-VLNKPN---NSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ETTSCEEEEETTCTTS--CCE-EESCCC---SEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ecCCEEEEEEcccCCC--CCc-chhccc---cccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 9999999999987321 111 222110 0000122235789999999887777643 5 777543
No 309
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.93 E-value=0.9 Score=40.85 Aligned_cols=115 Identities=12% Similarity=0.113 Sum_probs=64.2
Q ss_pred CCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecC---CCcEEEEEe--cCCeE
Q 010206 235 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSS--SKGSI 308 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~---~~~~l~~~~--~dg~i 308 (515)
.....|+|.|++.++++- ..|.|++++...+... .+..+ +............|+++|+ +..+.++-+ .++.|
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~-~v~~~-~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKT-ELGEV-PGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEEEC-TTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEe-eeccc-CceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 567899999999988888 4999999986543321 11111 1122233566899999995 214444322 34455
Q ss_pred EEEecCccc----ccccccceeeeccCCCccccccccccceeEEEEccCCCEEEE
Q 010206 309 RLIDMRQSA----LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 359 (515)
Q Consensus 309 ~~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 359 (515)
.-|.+..+. ........+..... -..| .-..|.|.|||.+.++
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~------~~~H--~g~~l~fgpDG~Lyvt 156 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPK------GVIH--NGGRIAFGPDKMLYAG 156 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECC------CSSC--CCCCEEECTTSCEEEE
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCC------CCCc--cCccccCCCCCCEEEE
Confidence 556554421 11111111221110 0122 3467999999988777
No 310
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=95.84 E-value=0.96 Score=40.47 Aligned_cols=111 Identities=14% Similarity=0.126 Sum_probs=64.9
Q ss_pred CCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCc-ccceecccC
Q 010206 199 FPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ-SFNIVDVKP 276 (515)
Q Consensus 199 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~-~~~~~~~~~ 276 (515)
+....+|.+..|++ .....+....+..+.+.. ...+-.+...+....|..+ .+.-|..++.+.... ...++..-
T Consensus 147 fV~~k~G~~~q~~l-~~~~~g~~~~~lVR~f~l--gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~- 222 (355)
T 3amr_A 147 MVTGKEGEFEQYEL-KADKNGYISGKKVRAFKM--NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRA- 222 (355)
T ss_dssp EEECSSSEEEEEEE-EECTTSCEEEEEEEEEEC--SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEB-
T ss_pred EEECCCCeEEEEEE-EeCCCCcccceEEEEecC--CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEe-
Confidence 66777899999994 222333344455555432 3568888899888888888 666566666442210 11111110
Q ss_pred ccccccCCceEEEEE--ecCCCcEEEEEe-cCCeEEEEecC
Q 010206 277 ANMEDLTEVITSAEF--HPTHCNMLAYSS-SKGSIRLIDMR 314 (515)
Q Consensus 277 ~~~~~~~~~i~~i~~--~p~~~~~l~~~~-~dg~i~~wd~~ 314 (515)
........+..|++ .+++..+|++++ .+....+||.+
T Consensus 223 -~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 223 -DGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp -SSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred -cCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 11222345788887 455422455555 57899999986
No 311
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.78 E-value=0.86 Score=40.21 Aligned_cols=124 Identities=8% Similarity=0.015 Sum_probs=68.2
Q ss_pred EEEccCCCEEEEEc---CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecC-CCcE
Q 010206 348 IKFARNGRHILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNLF 423 (515)
Q Consensus 348 ~~~s~~~~~l~s~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~-dg~i 423 (515)
..|+++++.|+-.+ ++.-.||.+...+.....+..+.. .+++++++.|+-.+. ...|
T Consensus 109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~-------------------~~~~~~g~~iy~t~~g~~~I 169 (302)
T 3s25_A 109 IYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL-------------------FTCNTSDRYFYYNNPKNGQL 169 (302)
T ss_dssp EEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC-------------------CCSEEETTEEEEECTTTCCE
T ss_pred cEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc-------------------eEeeEECCEEEEEeCCCceE
Confidence 36788888888765 345555655544555555543321 235677888775544 5678
Q ss_pred EEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCC--eEEE--ecCCCCCccccCCccccccCCeeEEEEcCCC
Q 010206 424 RVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSG--VVRR--VKGADNSALDANGNAFDFSMKLLHLAWHPSE 499 (515)
Q Consensus 424 ~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~--~v~l--~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 499 (515)
+.-++..+. ....+++ +.. ..+.|++.+|+-....+ .|.. ++|.... .+. ...+ ..|+|++
T Consensus 170 y~~~l~g~~-~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~--~Lt------~~~~--~~~~~~g 234 (302)
T 3s25_A 170 YRYDTASQS-EALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPV--VLT------EANI--EHYNVYG 234 (302)
T ss_dssp EEEETTTTE-EEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCE--ECS------CSCE--EEEEEET
T ss_pred EEEECCCCC-EEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeE--EEe------CCCc--ceEEECC
Confidence 777876543 2222222 222 23558888887665543 3433 3333322 111 1222 4478888
Q ss_pred CEEEEE
Q 010206 500 NSIACA 505 (515)
Q Consensus 500 ~~la~~ 505 (515)
.+|..+
T Consensus 235 ~~Iy~~ 240 (302)
T 3s25_A 235 SLIFYQ 240 (302)
T ss_dssp TEEEEE
T ss_pred CEEEEE
Confidence 888755
No 312
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.77 E-value=1.1 Score=40.64 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=21.8
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEc
Q 010206 36 DIISAIEFDKSGDHLATGDRGGRVVLFER 64 (515)
Q Consensus 36 ~~v~~v~~s~~g~~lasg~~dg~v~vw~~ 64 (515)
.....++|.|+|+.|.++...|.|++++.
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~ 46 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQA 46 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEET
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeC
Confidence 34578999999983444556799999884
No 313
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.76 E-value=1.1 Score=40.63 Aligned_cols=118 Identities=9% Similarity=0.050 Sum_probs=60.3
Q ss_pred CCeEEEEecCCCC-EEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecC---CCcEEEEEec------
Q 010206 235 YHINSISNNSDGE-TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSS------ 304 (515)
Q Consensus 235 ~~v~~~~~~~~~~-~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~---~~~~l~~~~~------ 304 (515)
.....|+|.|+++ ++++-..+.|++++.. +.....+.++. ............++++|+ +..+.++-..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~-~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVP-DVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCC-CCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCc-ccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 4578999999999 7766667899999854 22111111111 111122456789999995 3245554333
Q ss_pred -CCeEEEEecCcccc-cccccceeeeccCCCccccccccccceeEEEEccCCCEEEEE
Q 010206 305 -KGSIRLIDMRQSAL-CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 360 (515)
Q Consensus 305 -dg~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 360 (515)
...|..|++..... .......+..... .....| .-..++|.|||.+.++-
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~----~~~~~h--~~~~l~~~pdG~Lyv~~ 147 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPK----LSTGNH--FGGRLVFDGKGYLFIAL 147 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSC----CBSSSC--CCCCEEECSSSEEEEEE
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCC----CCCCcc--cCccEEECCCCcEEEEE
Confidence 23465566543210 0000011111000 000112 23579999999766663
No 314
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=95.72 E-value=1.8 Score=42.76 Aligned_cols=153 Identities=10% Similarity=0.006 Sum_probs=90.3
Q ss_pred CeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEec--CCeEEEE
Q 010206 236 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS--KGSIRLI 311 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~--dg~i~~w 311 (515)
.+..+++++.+..|..+ ..+.|.+.++...... .+. ...-.....|++.|.. ..|+.... .+.|...
T Consensus 81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~-~l~-------~~~l~~P~~iavdp~~-G~lY~tD~g~~~~I~r~ 151 (628)
T 4a0p_A 81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQ-VLV-------WKDLDSPRALALDPAE-GFMYWTEWGGKPKIDRA 151 (628)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCE-EEE-------CSSCCCEEEEEEETTT-TEEEEEECSSSCEEEEE
T ss_pred CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEE-EEE-------eCCCCCcccEEEccCC-CeEEEeCCCCCCEEEEE
Confidence 34567777765555554 5788888888643221 111 1223457899999965 34444442 5677777
Q ss_pred ecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--CeEEEEEeeCCCCCeeeEeeecccccc
Q 010206 312 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPK 389 (515)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~ 389 (515)
++..... ..+-. .-.....+++++++..|+.++. +.|..+|+.. .....+......
T Consensus 152 ~~dG~~~-----~~l~~------------~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG--~~~~v~~~~l~~--- 209 (628)
T 4a0p_A 152 AMDGSER-----TTLVP------------NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG--LNREVIADDLPH--- 209 (628)
T ss_dssp ETTSCSC-----EEEEC------------SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEEECCSC---
T ss_pred eCCCCce-----EEEEC------------CCCCcceEEEccccCEEEEEECCCCEEEEEcCCC--CceEEeeccCCC---
Confidence 7754321 11100 1135688999998888877653 8899999863 222333221111
Q ss_pred ccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCC
Q 010206 390 LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 432 (515)
Q Consensus 390 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~ 432 (515)
-..+++.. +.++++-...+.|...|..+++
T Consensus 210 ------------P~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 210 ------------PFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp ------------EEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred ------------ceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 12677764 4455555567888888876664
No 315
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.62 E-value=1.3 Score=40.26 Aligned_cols=27 Identities=33% Similarity=0.429 Sum_probs=21.0
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEE
Q 010206 36 DIISAIEFDKSGDHLATGDRGGRVVLFE 63 (515)
Q Consensus 36 ~~v~~v~~s~~g~~lasg~~dg~v~vw~ 63 (515)
.....++|.|||+++++ ..+|.|++++
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d 55 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS 55 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEEC
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEe
Confidence 44678999999985555 5669998887
No 316
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.54 E-value=0.78 Score=43.27 Aligned_cols=116 Identities=11% Similarity=0.109 Sum_probs=62.1
Q ss_pred CCeEEEEecCCCCEEEEeC-CCcEEEEeCCCCCcccceecccCccc--cccCCceEEEEEecC---CCcEEEEEec----
Q 010206 235 YHINSISNNSDGETFISAD-DLRINLWNLEISNQSFNIVDVKPANM--EDLTEVITSAEFHPT---HCNMLAYSSS---- 304 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~i~~i~~~p~---~~~~l~~~~~---- 304 (515)
.....|+|.|+|+++++-. .+.|++++...+... .+..+.. .+ .........|+|+|+ +..+.++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~-~~~~~~~-~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVK-TVFQVPE-IVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEEECTT-CCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEe-EEecCCc-cccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 4567999999999888874 457888876543321 1211111 11 113566789999995 4244444432
Q ss_pred --------CCeEEEEecCccc-ccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEE
Q 010206 305 --------KGSIRLIDMRQSA-LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 360 (515)
Q Consensus 305 --------dg~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 360 (515)
...|.-|++.... ........+..... -..| ....|+|.|||.+.++.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~------~~~H--~~~~l~f~pDG~Lyv~~ 161 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS------SKDH--QSGRLVIGPDQKIYYTI 161 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC------CSSC--CEEEEEECTTSCEEEEE
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC------CCCC--CCCeEeECCCCeEEEEE
Confidence 1345555543221 01111111211100 0112 46889999999887773
No 317
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.31 E-value=1.5 Score=39.32 Aligned_cols=34 Identities=12% Similarity=0.127 Sum_probs=25.9
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEcccCc
Q 010206 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTR 68 (515)
Q Consensus 35 ~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~ 68 (515)
-..-..++|.|||.++++-...|.|++++..+++
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~ 64 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGR 64 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCc
Confidence 3456799999999988776558999988755443
No 318
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.25 E-value=1.7 Score=39.40 Aligned_cols=30 Identities=13% Similarity=0.320 Sum_probs=20.8
Q ss_pred eeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCee
Q 010206 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV 148 (515)
Q Consensus 114 ~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 148 (515)
.-..|+| .+++. ++++..++.|.+++ +++.
T Consensus 32 ~P~~ia~--~pdG~-l~V~e~~g~I~~i~--~g~~ 61 (352)
T 2ism_A 32 VPWALAF--LPDGG-MLIAERPGRIRLFR--EGRL 61 (352)
T ss_dssp CEEEEEE--CTTSC-EEEEETTTEEEEEE--TTEE
T ss_pred CceEEEE--cCCCe-EEEEeCCCeEEEEE--CCCc
Confidence 3678999 45665 55566679999988 4543
No 319
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.24 E-value=1.1 Score=37.06 Aligned_cols=154 Identities=8% Similarity=-0.094 Sum_probs=82.3
Q ss_pred CceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccc-cccccceeEEEEccCCCEEEEEcC
Q 010206 284 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF-TEIIASISDIKFARNGRHILSRDY 362 (515)
Q Consensus 284 ~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~s~~~ 362 (515)
..+..++|+|++ .+.+. .+|.+.-.+..+... ..+-... ..+= .+- ....++.|.|+|.+.++ ++
T Consensus 41 ~~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~-----~~W~~s~----t~IG~~Gw-~~F~a~~fD~~G~LYav-~d 106 (236)
T 1tl2_A 41 SNFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDN-----DNWMGRA----KKIGNGGW-NQFQFLFFDPNGYLYAV-SK 106 (236)
T ss_dssp TTCSEEEECTTS-CEEEE--ETTEEEEESCCCSTT-----CCHHHHC----EEEECSCG-GGCSEEEECTTSCEEEE-ET
T ss_pred ccceeEEECCCc-cEEEE--eCCeEEEECCCCCCc-----ccccccc----cEeccccc-ccceEEEECCCCCEEEe-CC
Confidence 356799999988 66665 777766655543211 0010000 0000 000 11478999999998888 66
Q ss_pred CeEEEEEeeCCCCC--e--eeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc----
Q 010206 363 MTLKLWDINMDSGP--V--ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE---- 434 (515)
Q Consensus 363 ~~i~iwd~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~---- 434 (515)
|.|.-++-.+.+.. + .+..+.... .++..+.|.|+|.+.+.. |+.++-+...++...
T Consensus 107 G~iyr~~pP~~~~~~Wl~~a~~vg~~gw-------------~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~ 171 (236)
T 1tl2_A 107 DKLYKASPPQSDTDNWIARATEVGSGGW-------------SGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLA 171 (236)
T ss_dssp TEEEEESCCCSTTCCHHHHSEEEECSSG-------------GGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHH
T ss_pred CEEEEeCCCcCCCCceeccccEeccCCC-------------CceEEEEECCCceEEEEe--CCcEEecCCCCCCCccccc
Confidence 88776654221111 0 011111111 124589999999987766 777654444432111
Q ss_pred -eeeec-cCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 435 -STTLE-ASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 435 -~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
...+. ......+.+.+.+++.+.+.. ++.+..
T Consensus 172 ~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y~ 205 (236)
T 1tl2_A 172 RATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFYE 205 (236)
T ss_dssp HCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred ccceeccCCcceEEEEEECCCCcEEEEe--CCeEEe
Confidence 01111 233344556788888776665 665554
No 320
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.14 E-value=4.2 Score=43.40 Aligned_cols=41 Identities=12% Similarity=0.121 Sum_probs=30.5
Q ss_pred cceeEEEEEeecCC----CcEEEeeeC-CCeEEEEEccCCeeEEEe
Q 010206 112 EEKINKIRWCQSAN----SALYLLSTN-DKTIKLWKVQEKKVKKVF 152 (515)
Q Consensus 112 ~~~v~~l~~~~~~~----~~~l~~~~~-d~~i~iwd~~~~~~~~~~ 152 (515)
+..|.|+++.|.++ +.++++|.. |++++++++.+.+.....
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~ 598 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKE 598 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEE
Confidence 35699999876443 468888986 999999999876554433
No 321
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.77 E-value=2 Score=40.45 Aligned_cols=67 Identities=9% Similarity=0.040 Sum_probs=36.8
Q ss_pred CceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccC---CCEEEE
Q 010206 284 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN---GRHILS 359 (515)
Q Consensus 284 ~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~s 359 (515)
.....++|.|+| +++++-...+.|++++..++... .+..+. ... ........+..|+|+|+ +..|+.
T Consensus 27 ~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~~~--~~~~~~--~~~----~~~~g~~Gllgia~~Pdf~~~g~lYv 96 (454)
T 1cru_A 27 NKPHALLWGPDN-QIWLTERATGKILRVNPESGSVK--TVFQVP--EIV----NDADGQNGLLGFAFHPDFKNNPYIYI 96 (454)
T ss_dssp SSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEE--EEEECT--TCC----CCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred CCceEEEEcCCC-cEEEEEcCCCEEEEEECCCCcEe--EEecCC--ccc----cccCCCCceeEEEECCCcCcCCEEEE
Confidence 356899999999 76665444457888876544321 011111 000 00011256789999995 455544
No 322
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.68 E-value=2.9 Score=44.95 Aligned_cols=173 Identities=13% Similarity=0.086 Sum_probs=90.6
Q ss_pred CeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEe-------cCCeE
Q 010206 236 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-------SKGSI 308 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-------~dg~i 308 (515)
.|.-=.|-. .+.|+-..+..|.-|++.....+..+.+.. ..+. ...|..-..+++. ++++..+ -.|.+
T Consensus 107 ~VvfWkWis-~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~-~~L~--~~QIinY~~d~~~-kW~~l~gi~~~~~~v~G~m 181 (1630)
T 1xi4_A 107 DVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRH-SSLA--GCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAM 181 (1630)
T ss_pred CceEEEecC-CCeeEEEcCCeEEEeccCCCCccHHHHhcc-hhcc--cCeeEEeeeCCCC-CeEEEEeeccCCCccccee
Confidence 444444432 334554567789999997544444433222 1222 4567777788887 5555333 34778
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEc--c-CCCEEEEEc----CCeEEEEEeeCCCCCeeeEe
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA--R-NGRHILSRD----YMTLKLWDINMDSGPVATFQ 381 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--~-~~~~l~s~~----~~~i~iwd~~~~~~~~~~~~ 381 (515)
.+|..+.+.. ..+.||.+....+.+. + ....++.+. .+.++|-++..+...-..+.
T Consensus 182 QLyS~er~~s-----------------Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~ 244 (1630)
T 1xi4_A 182 QLYSVDRKVS-----------------QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP 244 (1630)
T ss_pred eeeecccccc-----------------hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCc
Confidence 8888766432 1244554444444332 1 122222221 27889988864201111111
Q ss_pred eeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc
Q 010206 382 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
.....+. .+.-..++ ++| ++..|+.-..+..-+.-|.|++||+.++.++
T Consensus 245 kk~~~~~-~~~~~~~D--fpv-~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 245 KKAVDVF-FPPEAQND--FPV-AMQISEKHDVVFLITKYGYIHLYDLETGTCI 293 (1630)
T ss_pred ccccccc-CCcccccC--cce-EEEeccccCEEEEEecCceEEEEecccchhh
Confidence 0000000 00001111 112 6777887778888888999999999998544
No 323
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=94.56 E-value=4.6 Score=41.04 Aligned_cols=247 Identities=13% Similarity=0.047 Sum_probs=123.8
Q ss_pred CCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCc-ccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEec
Q 010206 235 YHINSISNNSDGETFISADDLRINLWNLEISNQ-SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 313 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~ 313 (515)
..|.++.-..+|.+-+...+| +..++..++.. .............-....|.++.-..++ ++-+ |+ ++-+..||.
T Consensus 324 ~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~lWi-gt-~~GL~~~~~ 399 (758)
T 3ott_A 324 NQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQ-QLWI-AT-DGSINRYDY 399 (758)
T ss_dssp CBEEEEEECTTCCEEEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTS-CEEE-EE-TTEEEEEET
T ss_pred ceEEEEEEcCCCCEEEeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCC-CEEE-Ee-CCcHhhcCc
Confidence 468888888888877665544 66666553221 1111100000000123468888888877 4443 55 457888998
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCC----CCCee---eEeeeccc
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMD----SGPVA---TFQVHEHL 386 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~----~~~~~---~~~~~~~~ 386 (515)
.+++.. .+....... ......|.++...++|++.+....+-|.++|.... ..... .+......
T Consensus 400 ~~~~~~-----~~~~~~~~~-----~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l 469 (758)
T 3ott_A 400 ATRQFI-----HYNIVDNTG-----TYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGL 469 (758)
T ss_dssp TTTEEE-----EEEEECCC-------CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTC
T ss_pred CCCcEE-----EeecCCCcC-----CCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceeccccccccccc
Confidence 776431 111100000 00113578888877776555443466888886420 01110 11100100
Q ss_pred cccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeecc----CCCceeeEEECCCCCeeEeecC
Q 010206 387 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA----SKNPMRRQVQTPSRPSRPLGSL 462 (515)
Q Consensus 387 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~ 462 (515)
.. ..|.++...++|++.+.++..+-|..+|..++. . ..+.. ....+.++....+|.+-+. +.
T Consensus 470 --------~~---~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~-~-~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~ 535 (758)
T 3ott_A 470 --------SG---MFINQIIPDNEGNVWVLLYNNKGIDKINPRTRE-V-TKLFADELTGEKSPNYLLCDEDGLLWVG-FH 535 (758)
T ss_dssp --------SC---SCEEEEEECTTSCEEEEETTCSSEEEEETTTTE-E-EEECTTTSCGGGCEEEEEECTTSCEEEE-ET
T ss_pred --------cc---ceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCc-e-EEecCCCcCCCcccceEEECCCCCEEEE-ec
Confidence 00 125578888889877633334558888987652 2 22211 1234667777777765544 34
Q ss_pred CCeEEE-ecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcEEEEe
Q 010206 463 SGVVRR-VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 514 (515)
Q Consensus 463 d~~v~l-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~i~~ 514 (515)
.|..++ .+...... .....+ ....|.++... +| .|.+++.+|+..|+
T Consensus 536 ~Gl~~~~~~~~~~~~--~~~~gl-~~~~i~~i~~~-~g-~lWi~t~~Gl~~~~ 583 (758)
T 3ott_A 536 GGVMRINPKDESQQS--ISFGSF-SNNEILSMTCV-KN-SIWVSTTNGLWIID 583 (758)
T ss_dssp TEEEEECC--CCCCB--CCCCC----CCEEEEEEE-TT-EEEEEESSCEEEEE
T ss_pred CceEEEecCCCceEE--ecccCC-CccceEEEEEC-CC-CEEEECCCCeEEEc
Confidence 676666 11111110 000001 13457777653 44 56666677877765
No 324
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=93.32 E-value=4 Score=36.03 Aligned_cols=166 Identities=7% Similarity=0.077 Sum_probs=88.2
Q ss_pred CCeEEEEecCCCCEEEE-e---C----CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEec--CCCcEEEEEec
Q 010206 235 YHINSISNNSDGETFIS-A---D----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP--THCNMLAYSSS 304 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s-~---~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p--~~~~~l~~~~~ 304 (515)
..|-.-..+++.++++. | . .|.+.+|..+..... .+++|......+.+.. ....+|..+..
T Consensus 152 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ---------~ieGhaa~F~~~~~~g~~~~~~lf~fa~r 222 (365)
T 2xzh_A 152 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ---------PIEGHAASFAQFKMEGNAEESTLFCFAVR 222 (365)
T ss_dssp CEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEE---------EECCSEEEEEEECCTTCSSCEEEEEEEEE
T ss_pred ceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccc---------eeeeeeeeeEEEecCCCCCCceEEEEEEe
Confidence 55667777888888774 3 1 367788888744322 4566655443333321 11123333333
Q ss_pred ---CCeEEEEecCccc-ccccc-cceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCee
Q 010206 305 ---KGSIRLIDMRQSA-LCDTH-SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVA 378 (515)
Q Consensus 305 ---dg~i~~wd~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~ 378 (515)
.+.+++-++.... ..... .+..+..-.+. .-.+-.-++..|+....++.-+. |.|++||+.+ +.++.
T Consensus 223 ~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppe------a~~DFPVamqvs~kygviyviTK~G~ihlyDleT-gt~i~ 295 (365)
T 2xzh_A 223 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE------AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTCIY 295 (365)
T ss_dssp ETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTT------CTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT-CCEEE
T ss_pred cCCCcEEEEEEcCCCCCCCCCcccccceeeCCcc------ccCCceEEEEecccCCEEEEEeCCcEEEEEEccc-CcEEE
Confidence 2588888884431 10000 11111111110 01123456888887777777665 9999999997 77776
Q ss_pred eEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCC
Q 010206 379 TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
.-+-.... |+..+-+.+..-++.....|.|.--.++..
T Consensus 296 ~nrIS~d~---------------iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 296 MNRISGET---------------IFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EEECCSSC---------------EEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred EeccCCCc---------------eEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 65544432 223333333334444456676666666543
No 325
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=91.97 E-value=7.6 Score=35.88 Aligned_cols=167 Identities=7% Similarity=0.079 Sum_probs=93.2
Q ss_pred cCCeEEEEecCCCCEEEE-e---C----CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecC--CCcEEEEEe
Q 010206 234 DYHINSISNNSDGETFIS-A---D----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSS 303 (515)
Q Consensus 234 ~~~v~~~~~~~~~~~l~s-~---~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~--~~~~l~~~~ 303 (515)
...|..-..+++.++++. | . .|.+.+|..+..... .+++|......+.+..+ ...+|..+.
T Consensus 150 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ---------~ieGhaa~F~~~~~~g~~~~~~lf~fa~ 220 (494)
T 1bpo_A 150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ---------PIEGHAASFAQFKMEGNAEESTLFCFAV 220 (494)
T ss_dssp TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE---------EECCSEEEEEEEECTTCSSEEEEEEEEE
T ss_pred cceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc---------hheeeeeeeEEEecCCCCCCceEEEEEE
Confidence 356677778889998874 3 2 367788888754322 45677655544444321 112444444
Q ss_pred cC---CeEEEEecCccc-ccccc-cceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCe
Q 010206 304 SK---GSIRLIDMRQSA-LCDTH-SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPV 377 (515)
Q Consensus 304 ~d---g~i~~wd~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~ 377 (515)
.. +.+++.++.... ..... .+..+..-.+ ..-..---++..|+....++.-+. |.|++||+.+ +.++
T Consensus 221 r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fpp------e~~~DFPvamqvs~kygviyviTK~G~i~lyDleT-gt~i 293 (494)
T 1bpo_A 221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP------EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTCI 293 (494)
T ss_dssp CSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCT------TSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT-CCEE
T ss_pred ecCCCcEEEEEEcCCCccCCCCccceeeeeeCCc------ccccCceeEEEecccCCEEEEEecCceEEEEeccc-ceee
Confidence 32 788998885431 00000 0111111111 001123456888887777777665 9999999997 7777
Q ss_pred eeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCC
Q 010206 378 ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
..-+..... |+..+-+....-++.....|.|.--.++..
T Consensus 294 ~~nrIs~~~---------------iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 294 YMNRISGET---------------IFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEEECCSSC---------------EEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred eeecccCCc---------------eEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 665544332 234444444445555557777776666654
No 326
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=90.53 E-value=3.6 Score=39.27 Aligned_cols=106 Identities=11% Similarity=0.073 Sum_probs=67.6
Q ss_pred ceeEEEEccCCCEEEEEcC--CeEEEEEeeCC-----CC---CeeeEeeeccccccccccccCCCccceeeEEEcCCCCE
Q 010206 344 SISDIKFARNGRHILSRDY--MTLKLWDINMD-----SG---PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 413 (515)
Q Consensus 344 ~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 413 (515)
....+.++|||++++.++. .++.++|+.+- .+ +...+.+..... ..-.-.+|+++|..
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G------------lGPlHt~Fd~~G~a 391 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG------------LGPLHTTFDGRGNA 391 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC------------SCEEEEEECSSSEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC------------CcccEEEECCCCce
Confidence 3567889999999999764 89999998741 11 111111111100 01236899999965
Q ss_pred EEEecCCCcEEEEecCCC---------CcceeeeccCCCceeeEE-----ECCCCCeeEeec
Q 010206 414 VATGSYSNLFRVFGCSEG---------SAESTTLEASKNPMRRQV-----QTPSRPSRPLGS 461 (515)
Q Consensus 414 l~s~s~dg~i~iw~~~~~---------~~~~~~~~~~~~~v~~~~-----~~~~~~~l~s~~ 461 (515)
..|---|..|.-|++... ...+..+..|..+-...+ ..|+|+||++.+
T Consensus 392 YTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 392 YTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred EeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 566678999999999753 123455666665543332 268999998874
No 327
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=88.20 E-value=29 Score=37.68 Aligned_cols=153 Identities=9% Similarity=0.149 Sum_probs=96.1
Q ss_pred CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCC
Q 010206 254 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 333 (515)
Q Consensus 254 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 333 (515)
..+|.|.|+..+....+ ..-..-+.-++|.. +.+|.-. ...+.+||+.+..... .+..+
T Consensus 47 ~~~vvIidl~~~~~~~r-----------rpi~AdsAIMnP~~-~iiALra-g~~lQiFnl~~k~klk----s~~~~---- 105 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIR-----------RPISADSAIMNPAS-KVIALKA-GKTLQIFNIEMKSKMK----AHTMT---- 105 (1630)
T ss_pred CceEEEEECCCCCCccc-----------ccccchhhccCCCc-ceEEEec-CCeEEEeehHHhhhhc----ccccC----
Confidence 45788999987654321 11122345578887 6776654 7899999998865432 22211
Q ss_pred ccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCE
Q 010206 334 TRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 413 (515)
Q Consensus 334 ~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 413 (515)
.+|.-=.|-. .+.|+--++..|.-|++.....|.+.+..|....+ ..|..-..+++.++
T Consensus 106 ---------e~VvfWkWis-~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~-----------~QIinY~~d~~~kW 164 (1630)
T 1xi4_A 106 ---------DDVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAG-----------CQIINYRTDAKQKW 164 (1630)
T ss_pred ---------CCceEEEecC-CCeeEEEcCCeEEEeccCCCCccHHHHhcchhccc-----------CeeEEeeeCCCCCe
Confidence 2454445543 34555556668999999754677777776654421 12456778888888
Q ss_pred EEEec-------CCCcEEEEecCCCCcceeeeccCCCceeeEEE
Q 010206 414 VATGS-------YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ 450 (515)
Q Consensus 414 l~s~s-------~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~ 450 (515)
++..+ -.|.+.+|..+.+ ..+.+++|......+..
T Consensus 165 ~~l~gi~~~~~~v~G~mQLyS~er~--~sQ~iegha~~F~~~~~ 206 (1630)
T 1xi4_A 165 LLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAASFAQFKM 206 (1630)
T ss_pred EEEEeeccCCCcccceeeeeecccc--cchhhhHhHhhhheecc
Confidence 76332 3588899998843 55678888766554444
No 328
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=86.60 E-value=21 Score=33.50 Aligned_cols=119 Identities=13% Similarity=0.084 Sum_probs=62.8
Q ss_pred CCeEEEEecCCCC--EEEEeCCCcEEEEeCCCCCcccceecccCcccc----ccCCceEEEEEecC----CCcEEEEEec
Q 010206 235 YHINSISNNSDGE--TFISADDLRINLWNLEISNQSFNIVDVKPANME----DLTEVITSAEFHPT----HCNMLAYSSS 304 (515)
Q Consensus 235 ~~v~~~~~~~~~~--~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~i~~i~~~p~----~~~~l~~~~~ 304 (515)
.....|+|.|++. +|++-..|.|++++.........+.++...... ........|+|+|+ + .+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~-~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNG-KLYVSYTT 92 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHC-EEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCC-EEEEEEeC
Confidence 4567999999986 676668899999975422111112222111111 12456889999996 4 44444332
Q ss_pred C------------CeEEEEecCccc--cc--ccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC
Q 010206 305 K------------GSIRLIDMRQSA--LC--DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY 362 (515)
Q Consensus 305 d------------g~i~~wd~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~ 362 (515)
+ ..|.-|.+..+. .. ......++.... ...| ....|+|.|||.+.++-.+
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~------~~~H--~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAEL------HRKH--LGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEES------SSSS--CEEEEEECTTSCEEEEECC
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCC------CCcc--cCCcEeECCCCcEEEEeCC
Confidence 1 134445554321 10 011112221110 1223 3578999999988777443
No 329
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=86.46 E-value=16 Score=31.80 Aligned_cols=23 Identities=9% Similarity=0.091 Sum_probs=16.1
Q ss_pred CCCcEEEEEecC-----CeEEEEecCccc
Q 010206 294 THCNMLAYSSSK-----GSIRLIDMRQSA 317 (515)
Q Consensus 294 ~~~~~l~~~~~d-----g~i~~wd~~~~~ 317 (515)
++ .+++.|+.+ ..+.+||+.+.+
T Consensus 159 ~~-~iyv~GG~~~~~~~~~~~~~d~~~~~ 186 (301)
T 2vpj_A 159 SG-VIYCLGGYDGLNILNSVEKYDPHTGH 186 (301)
T ss_dssp TT-EEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred CC-EEEEECCCCCCcccceEEEEeCCCCc
Confidence 55 677777764 457888887654
No 330
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=85.96 E-value=32 Score=34.85 Aligned_cols=243 Identities=11% Similarity=0.035 Sum_probs=121.5
Q ss_pred CCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecC
Q 010206 235 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 314 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~ 314 (515)
..|.++....++.+.+...+ -+..++..+.... ..... .........|.++...+++ ..|-.|+. +-+..+|..
T Consensus 146 ~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~--~~~~~-~~~~~~~~~i~~i~~d~~~-~~lWigt~-~Gl~~~~~~ 219 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYVGTYN-GLCRYIPSNGKFE--GIPLP-VHSSQSNLFVNSLLEDTTR-QCVWIGTE-GYLFQYFPS 219 (758)
T ss_dssp SCEEEEEECTTCCEEEEETT-EEEEEETTTTEEE--EECCC-CCTTCSSCCEEEEEEETTT-TEEEEEEE-EEEEEEETT
T ss_pred CeEEEEEEcCCCCEEEEeCC-CHhhCccCCCceE--EecCC-CccccccceeEEEEEECCC-CEEEEEEC-CCCeEEcCC
Confidence 35677777777776665444 4667776644311 11000 0000113358888888776 44444554 457788877
Q ss_pred cccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccc
Q 010206 315 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLY 394 (515)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (515)
+++.. .+.. + ....|.++...++|.+.+.. ++-+.+++..+ . ....+......... +.
T Consensus 220 ~~~~~-----~~~~---------l--~~~~i~~i~~d~~g~lWigT-~~Gl~~~~~~~-~-~~~~~~~~~~~~~~---l~ 277 (758)
T 3ott_A 220 TGQIK-----QTEA---------F--HNNSIKSLALDGNGDLLAGT-DNGLYVYHNDT-T-PLQHIIHDSRNIQS---LT 277 (758)
T ss_dssp TTEEE-----EEEE---------E--EEEEEEEEEECTTCCEEEEE-TTEEEEECCTT-S-CCEEECCCTTCTTS---CS
T ss_pred CCeEE-----eccC---------C--CCCeEEEEEEcCCCCEEEEe-CCceeEEecCC-C-cEEEEEcCCCCcCc---CC
Confidence 65421 1110 0 11358888888888776655 54577777653 2 23333211110000 00
Q ss_pred cCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeec-----cCCCceeeEEECCCCCeeEeecCCCeEEEe
Q 010206 395 ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE-----ASKNPMRRQVQTPSRPSRPLGSLSGVVRRV 469 (515)
Q Consensus 395 ~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~ 469 (515)
. ..|.++....+|.+-+ |+..| +.++..... ....... .....|.++....+|.+-+. +.+|..++.
T Consensus 278 -~---~~i~~i~~D~~g~lWi-GT~~G-l~~~~~~~~-~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~Gl~~~~ 349 (758)
T 3ott_A 278 -N---NIIWNIFADQEHNIWL-GTDYG-ISLSRYNSA-LQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANGLIRFT 349 (758)
T ss_dssp -C---SCEEEEEECTTCCEEE-EESSS-EEEECCCC--CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTEEEEES
T ss_pred -c---CeEEEEEEcCCCCEEE-EeCCc-ccccccCCc-eeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCcceeec
Confidence 0 1255788887777544 44556 555433211 1111111 12345778887777765433 356766661
Q ss_pred cCC-CCCccc-cC---CccccccCCeeEEEEcCCCCEEEEEcCCcEEEEe
Q 010206 470 KGA-DNSALD-AN---GNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 514 (515)
Q Consensus 470 ~~~-~~~~~~-~~---~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~i~~ 514 (515)
... ...... .. ....-....|.++.-..+|++.+ |+.+|+..|+
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt~~GL~~~~ 398 (758)
T 3ott_A 350 DPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-ATDGSINRYD 398 (758)
T ss_dssp CTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EETTEEEEEE
T ss_pred ccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-EeCCcHhhcC
Confidence 111 000000 00 00001134688888888877544 4467888875
No 331
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=85.27 E-value=22 Score=32.33 Aligned_cols=133 Identities=11% Similarity=0.102 Sum_probs=70.0
Q ss_pred CCceEEEEEe---cC----CCcEEEEE-ecCCeEEEEecCcccccccccceeeeccCCCcccccccc----ccceeEEEE
Q 010206 283 TEVITSAEFH---PT----HCNMLAYS-SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI----IASISDIKF 350 (515)
Q Consensus 283 ~~~i~~i~~~---p~----~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~ 350 (515)
...+..+++. |. + .++..+ ...+.|.++|+.+++...-....+. ++ ........+. ...+..+++
T Consensus 151 ~S~l~di~VD~~~~~~~c~~-~~aYItD~~~~gLIVydl~~~~swRv~~~~~~-pd-~~~~~~i~G~~~~~~~Gi~gIaL 227 (381)
T 3q6k_A 151 PTYFGGFAVDVANPKGDCSE-TFVYITNFLRGALFIYDHKKQDSWNVTHPTFK-AE-RPTKFDYGGKEYEFKAGIFGITL 227 (381)
T ss_dssp GGGEEEEEEEESCTTTTSCS-EEEEEEETTTTEEEEEETTTTEEEEEECGGGS-CC-SCEEEEETTEEEEECCCEEEEEE
T ss_pred CCccceEEEecccCCCCCCc-cEEEEEcCCCCcEEEEECCCCcEEEEccCCCc-cc-cCcceEECCEEeEeccCceEEEe
Confidence 4567888887 22 2 233333 3477899999998864321101110 00 0001111121 247899999
Q ss_pred ccC----CCEEEEEcCCeEEEEEeeC----CCCCeeeE--eeeccccccccccccCCCccceeeEEEc-CCCCEEEEecC
Q 010206 351 ARN----GRHILSRDYMTLKLWDINM----DSGPVATF--QVHEHLRPKLCDLYENDSIFDKFECCLS-GDGGRVATGSY 419 (515)
Q Consensus 351 s~~----~~~l~s~~~~~i~iwd~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~s~ 419 (515)
+|+ ++.|+-..-..-++|.+.+ .......+ .+... ...+-..++++ .+|.++++--.
T Consensus 228 sp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg------------~~s~~~~~~~D~~~G~ly~~~~~ 295 (381)
T 3q6k_A 228 GDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRG------------KYNDAIALAYDPKTKVIFFAEAN 295 (381)
T ss_dssp CCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECC------------TTCCEEEEEECTTTCEEEEEESS
T ss_pred cCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecC------------CCCCcceEEEeCCCCeEEEEecc
Confidence 998 7888765433335555542 01111111 11111 00111245675 67877777788
Q ss_pred CCcEEEEecCC
Q 010206 420 SNLFRVFGCSE 430 (515)
Q Consensus 420 dg~i~iw~~~~ 430 (515)
.+.|..|+..+
T Consensus 296 ~~aI~~w~~~~ 306 (381)
T 3q6k_A 296 TKQVSCWNTQK 306 (381)
T ss_dssp SSEEEEEETTS
T ss_pred CCeEEEEeCCC
Confidence 89999999874
No 332
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=82.64 E-value=24 Score=30.85 Aligned_cols=106 Identities=9% Similarity=0.089 Sum_probs=56.4
Q ss_pred EEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC--CeEEEEecCc
Q 010206 240 ISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--GSIRLIDMRQ 315 (515)
Q Consensus 240 ~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d--g~i~~wd~~~ 315 (515)
..++++++.|.-. ....|...++...... .+. .+... ..+.|++ ..|+..... ..|..-++..
T Consensus 150 ~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~-~l~----------~~~~~-~~~~P~g-~~iy~t~~~~~~~I~~~~ldG 216 (302)
T 3s25_A 150 FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA-LFY----------DCNCY-KPVVLDD-TNVYYMDVNRDNAIVHVNINN 216 (302)
T ss_dssp CCSEEETTEEEEECTTTCCEEEEETTTTEEE-EEE----------CSCEE-EEEEEET-TEEEEEEGGGTTEEEEECSSS
T ss_pred eEeeEECCEEEEEeCCCceEEEEECCCCCEE-EEe----------CCCcc-ceeeecC-CEEEEEEcCCCcEEEEEECCC
Confidence 4567888888865 3677888887654322 111 12222 3466888 666665543 3555555554
Q ss_pred ccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC---CeEEEEEeeCCCCCeeeEe
Q 010206 316 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY---MTLKLWDINMDSGPVATFQ 381 (515)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~---~~i~iwd~~~~~~~~~~~~ 381 (515)
... ..+.. ..+ ..|+|+++.|+-+++ +.|..-++. +...+++.
T Consensus 217 ~~~-----~~Lt~--------------~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~D--G~~r~~l~ 262 (302)
T 3s25_A 217 PNP-----VVLTE--------------ANI--EHYNVYGSLIFYQRGGDNPALCVVKND--GTGFKELA 262 (302)
T ss_dssp CCC-----EECSC--------------SCE--EEEEEETTEEEEEECSSSCEEEEEETT--SCCCEEEE
T ss_pred CCe-----EEEeC--------------CCc--ceEEECCCEEEEEECCCCcEEEEEECC--CCccEEee
Confidence 331 11110 123 237888888886533 445444443 54444443
No 333
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=78.82 E-value=31 Score=29.78 Aligned_cols=64 Identities=13% Similarity=0.127 Sum_probs=33.9
Q ss_pred CCCEEEEe-C-----CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC-----CeEEEEec
Q 010206 245 DGETFISA-D-----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-----GSIRLIDM 313 (515)
Q Consensus 245 ~~~~l~s~-~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-----g~i~~wd~ 313 (515)
++++++.| . ...+.+||+.+.+-.. +. .+....... +++.. ++ .+++.|+.+ ..+.+||+
T Consensus 206 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~--~~----~~p~~r~~~-~~~~~-~~-~i~v~GG~~~~~~~~~v~~yd~ 276 (301)
T 2vpj_A 206 NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT--VT----SMTTPRCYV-GATVL-RG-RLYAIAGYDGNSLLSSIECYDP 276 (301)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEE--EC----CCSSCCBSC-EEEEE-TT-EEEEECCBCSSSBEEEEEEEET
T ss_pred CCEEEEEeCCCCCcccceEEEEeCCCCcEEE--CC----CCCCcccce-eEEEE-CC-EEEEEcCcCCCcccccEEEEcC
Confidence 56666665 3 2568899987654321 11 111111111 22222 55 677878765 35778888
Q ss_pred Cccc
Q 010206 314 RQSA 317 (515)
Q Consensus 314 ~~~~ 317 (515)
++.+
T Consensus 277 ~~~~ 280 (301)
T 2vpj_A 277 IIDS 280 (301)
T ss_dssp TTTE
T ss_pred CCCe
Confidence 7654
No 334
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=78.02 E-value=33 Score=29.65 Aligned_cols=64 Identities=6% Similarity=0.097 Sum_probs=34.2
Q ss_pred CCCEEEEe-CC-----CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCC-----eEEEEec
Q 010206 245 DGETFISA-DD-----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG-----SIRLIDM 313 (515)
Q Consensus 245 ~~~~l~s~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg-----~i~~wd~ 313 (515)
++++++.| .+ ..+.+||+.+.+-.. +- .+...... .+++.. ++ .+++.|+.++ .+.+||+
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~-----~~~~~r~~-~~~~~~-~~-~i~v~GG~~~~~~~~~v~~yd~ 274 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQ-VA-----DMNMCRRN-AGVCAV-NG-LLYVVGGDDGSCNLASVEYYNP 274 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEEEE-EC-----CCSSCCBS-CEEEEE-TT-EEEEECCBCSSSBCCCEEEEET
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCEee-CC-----CCCCcccc-CeEEEE-CC-EEEEECCcCCCcccccEEEEcC
Confidence 56677765 32 468899987654221 11 11101111 122222 45 7888887653 4788888
Q ss_pred Cccc
Q 010206 314 RQSA 317 (515)
Q Consensus 314 ~~~~ 317 (515)
.+.+
T Consensus 275 ~~~~ 278 (302)
T 2xn4_A 275 TTDK 278 (302)
T ss_dssp TTTE
T ss_pred CCCe
Confidence 7654
No 335
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=77.78 E-value=5.1 Score=38.25 Aligned_cols=80 Identities=16% Similarity=0.160 Sum_probs=53.8
Q ss_pred CCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccc--eecccC---ccccccCCceEEEEEecCCCcEEEEEecCCe
Q 010206 235 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFN--IVDVKP---ANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 307 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~--~~~~~~---~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~ 307 (515)
.....+.++|||++++.+ -+.++.++|++.....+. +.+.+. ...+ -.-.....+|.++| +...+-.-|..
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G-~aYTtlfidSq 400 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRG-NAYTTLFIDSQ 400 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSS-EEEEEETTTTE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCC-ceEeeeeecce
Confidence 345678899999999986 599999999974322110 000000 0111 23446788999998 77777778999
Q ss_pred EEEEecCcc
Q 010206 308 IRLIDMRQS 316 (515)
Q Consensus 308 i~~wd~~~~ 316 (515)
|.-|++...
T Consensus 401 vvkWni~~a 409 (638)
T 3sbq_A 401 VVKWNMEEA 409 (638)
T ss_dssp EEEEEHHHH
T ss_pred EEEEeccHH
Confidence 999999653
No 336
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=77.45 E-value=23 Score=31.58 Aligned_cols=25 Identities=16% Similarity=0.346 Sum_probs=20.7
Q ss_pred cEEEEEecCCeEEEEecCccccccc
Q 010206 297 NMLAYSSSKGSIRLIDMRQSALCDT 321 (515)
Q Consensus 297 ~~l~~~~~dg~i~~wd~~~~~~~~~ 321 (515)
.+++.++.||.|.-.|..+|+...+
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~ 35 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWS 35 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEE
Confidence 4788899999999999999886543
No 337
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=76.41 E-value=37 Score=29.34 Aligned_cols=22 Identities=9% Similarity=0.116 Sum_probs=15.6
Q ss_pred CCCEEEEecCCC-----cEEEEecCCC
Q 010206 410 DGGRVATGSYSN-----LFRVFGCSEG 431 (515)
Q Consensus 410 ~~~~l~s~s~dg-----~i~iw~~~~~ 431 (515)
++++++.|+.++ .+.+||+.+.
T Consensus 251 ~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 251 NGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCEEEEECCcCCCcccccEEEEcCCCC
Confidence 677777777553 4788888765
No 338
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=76.15 E-value=38 Score=29.34 Aligned_cols=64 Identities=9% Similarity=0.162 Sum_probs=34.6
Q ss_pred CCCEEEEe-CC-----CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC-----CeEEEEec
Q 010206 245 DGETFISA-DD-----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-----GSIRLIDM 313 (515)
Q Consensus 245 ~~~~l~s~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-----g~i~~wd~ 313 (515)
++++++.| .+ ..+.+||+.+.+-.. + . .+.........+.+ ++ .+++.|+.+ ..+.+||+
T Consensus 200 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~--~--~--~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~~~~yd~ 270 (306)
T 3ii7_A 200 KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKM--V--S--PMPWKGVTVKCAAV--GS-IVYVLAGFQGVGRLGHILEYNT 270 (306)
T ss_dssp TTEEEEECCEETTEEBCCEEEEETTTTEEEE--C--C--CCSCCBSCCEEEEE--TT-EEEEEECBCSSSBCCEEEEEET
T ss_pred CCEEEEEeCCCCCCCCceEEEeeCCCCcEEE--C--C--CCCCCccceeEEEE--CC-EEEEEeCcCCCeeeeeEEEEcC
Confidence 56666665 22 468889987654221 1 0 11111112222223 45 788888854 46788888
Q ss_pred Cccc
Q 010206 314 RQSA 317 (515)
Q Consensus 314 ~~~~ 317 (515)
.+.+
T Consensus 271 ~~~~ 274 (306)
T 3ii7_A 271 ETDK 274 (306)
T ss_dssp TTTE
T ss_pred CCCe
Confidence 7654
No 339
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=72.04 E-value=50 Score=34.47 Aligned_cols=40 Identities=8% Similarity=0.194 Sum_probs=31.3
Q ss_pred eeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeecc
Q 010206 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWN 155 (515)
Q Consensus 114 ~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 155 (515)
.+.+++. ..+..++++-+.|+++|+|++.++++.......
T Consensus 237 ~~~~~~~--~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~ 276 (950)
T 4gq2_M 237 TIISMIF--LSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 276 (950)
T ss_dssp CEEEEEE--ETTTTEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred eEEEEee--cCCCcEEEEEECCCEEEEEECCCCCeEeeeccc
Confidence 4556665 455669999999999999999999987766543
No 340
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=69.23 E-value=76 Score=29.76 Aligned_cols=31 Identities=10% Similarity=0.073 Sum_probs=22.8
Q ss_pred CceEEEEEecCCCcEEEEEecCCeEEEEecC
Q 010206 284 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 314 (515)
Q Consensus 284 ~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~ 314 (515)
...+.|+|.|++...|+++...|.|++++..
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 3468999999982135556788999999753
No 341
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=65.37 E-value=68 Score=27.79 Aligned_cols=64 Identities=13% Similarity=0.205 Sum_probs=33.8
Q ss_pred CCCEEEEe-CC-----CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC-----CeEEEEec
Q 010206 245 DGETFISA-DD-----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-----GSIRLIDM 313 (515)
Q Consensus 245 ~~~~l~s~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-----g~i~~wd~ 313 (515)
++++++.| .+ ..+.+||+.+.+-.. + . .+...... .+++.. ++ .+++.|+.+ ..+.+||+
T Consensus 215 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~--~--~--~~p~~r~~-~~~~~~-~~-~i~v~GG~~~~~~~~~v~~yd~ 285 (308)
T 1zgk_A 215 HNCIYAAGGYDGQDQLNSVERYDVETETWTF--V--A--PMKHRRSA-LGITVH-QG-RIYVLGGYDGHTFLDSVECYDP 285 (308)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEE--C--C--CCSSCCBS-CEEEEE-TT-EEEEECCBCSSCBCCEEEEEET
T ss_pred CCEEEEEeCCCCCCccceEEEEeCCCCcEEE--C--C--CCCCCccc-eEEEEE-CC-EEEEEcCcCCCcccceEEEEcC
Confidence 56666666 32 568899987654221 1 0 11111111 122222 45 677877754 45778887
Q ss_pred Cccc
Q 010206 314 RQSA 317 (515)
Q Consensus 314 ~~~~ 317 (515)
.+.+
T Consensus 286 ~~~~ 289 (308)
T 1zgk_A 286 DTDT 289 (308)
T ss_dssp TTTE
T ss_pred CCCE
Confidence 7654
No 342
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=63.46 E-value=81 Score=28.03 Aligned_cols=29 Identities=0% Similarity=-0.002 Sum_probs=25.0
Q ss_pred cEEEeeeCCCeEEEEEccCCeeEEEeecc
Q 010206 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWN 155 (515)
Q Consensus 127 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 155 (515)
..+++++.||.|.-.|..+|+.+......
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~ 39 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE 39 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC
Confidence 47889999999999999999988877654
No 343
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=60.14 E-value=46 Score=34.78 Aligned_cols=34 Identities=9% Similarity=-0.018 Sum_probs=28.8
Q ss_pred ceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc
Q 010206 401 DKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 401 ~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
.+.+++..++..++++-+.|+++|+|++.+++..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v 270 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCV 270 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeE
Confidence 4557788888999999999999999999988443
No 344
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=59.00 E-value=88 Score=26.95 Aligned_cols=23 Identities=0% Similarity=-0.018 Sum_probs=16.6
Q ss_pred CCCEEEEecCC-----CcEEEEecCCCC
Q 010206 410 DGGRVATGSYS-----NLFRVFGCSEGS 432 (515)
Q Consensus 410 ~~~~l~s~s~d-----g~i~iw~~~~~~ 432 (515)
++++++.|+.+ ..+.+||+.+..
T Consensus 247 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 247 GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 67777777744 468888988754
No 345
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=57.74 E-value=1e+02 Score=27.30 Aligned_cols=28 Identities=4% Similarity=-0.018 Sum_probs=16.5
Q ss_pred cCCCCEEEEecCCC------cEEEEecCCCCcce
Q 010206 408 SGDGGRVATGSYSN------LFRVFGCSEGSAES 435 (515)
Q Consensus 408 s~~~~~l~s~s~dg------~i~iw~~~~~~~~~ 435 (515)
.-++++++.|+.++ .|.++++++++...
T Consensus 314 ~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 314 PWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTV 347 (357)
T ss_dssp EETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEE
T ss_pred EeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEe
Confidence 34677777777542 45566887765443
No 346
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=57.25 E-value=1.6e+02 Score=29.44 Aligned_cols=222 Identities=9% Similarity=-0.003 Sum_probs=107.1
Q ss_pred EEEE-ecCCCCEEEEe-C-----CCcEEEEeCCCCCcccceecccCcccc-ccCC------ceEEEEEecCCCcEEEEEe
Q 010206 238 NSIS-NNSDGETFISA-D-----DLRINLWNLEISNQSFNIVDVKPANME-DLTE------VITSAEFHPTHCNMLAYSS 303 (515)
Q Consensus 238 ~~~~-~~~~~~~l~s~-~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~------~i~~i~~~p~~~~~l~~~~ 303 (515)
..+. ++|++++++.+ + -..++++|+.+++..... +. .-+. ....++|..++ .++++..
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~-------~~~~~k~~~~~~~~~~~~~W~d~~-~~~~~~~ 203 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNG-------FEPITNSGKLLEGKFTYPTWINKD-TIIFNLV 203 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTC-------SCCBCTTCCBCCEETCCEEEEETT-EEEECCC
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCC-------cccccccccccccccceeeEECCC-EEEEEeC
Confidence 3444 88999988865 2 346899999987644221 11 0011 11234776444 4444321
Q ss_pred ----------cCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCE-----EEEEc-C---Ce
Q 010206 304 ----------SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH-----ILSRD-Y---MT 364 (515)
Q Consensus 304 ----------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-----l~s~~-~---~~ 364 (515)
....++.|.+-+... .-...|+.... .--.....++++++ +++.+ + ..
T Consensus 204 ~~~~~~~~~~~~~~v~~~~~Gt~~~--~~~~v~~~~~~-----------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 270 (711)
T 4hvt_A 204 LHKNEITSSLYPNSLYIWKRGESIE--KAKKLFEVPKE-----------YIYVSAGKLLSDTISSSLIFISANKDFYNYD 270 (711)
T ss_dssp CSTTCBCTTSSBCEEEEEETTSCGG--GCEEEEECCTT-----------SCEEEEEESSCTTTCSSEEEEEEESSSSCEE
T ss_pred CCCCCcCcCCCCCEEEEEECCCChH--HCeEEeccCCC-----------ceEEEEEEecCCCceEEEEEEEEecccCcee
Confidence 124577776655432 11223333221 11223445666652 44322 2 45
Q ss_pred EEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEe----------cCCCcEEEEecCCCC--
Q 010206 365 LKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG----------SYSNLFRVFGCSEGS-- 432 (515)
Q Consensus 365 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~----------s~dg~i~iw~~~~~~-- 432 (515)
+.+.|...+...+..+...... .+..+.++.+++.. ...+.|...++.+..
T Consensus 271 ~~~~~~~~~~~~~~~l~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 333 (711)
T 4hvt_A 271 NYILDTKYKNLKLQKINMPSDA-----------------TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKT 333 (711)
T ss_dssp EEEEECSSSSCEEEECCSCTTC-----------------EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSC
T ss_pred EEEEcCCCCCCcceEeecCCcc-----------------eEeeeECCEEEEEECcccccccccCCCCeEEEEECCccccc
Confidence 5555554222222233222111 23334455555532 146778889887631
Q ss_pred ----cceee-e-ccCCCceeeEEECCCCCeeEeecCCCeEEE--e--cCCC--CCccc-cCCccccccCCeeEEEEcCCC
Q 010206 433 ----AESTT-L-EASKNPMRRQVQTPSRPSRPLGSLSGVVRR--V--KGAD--NSALD-ANGNAFDFSMKLLHLAWHPSE 499 (515)
Q Consensus 433 ----~~~~~-~-~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l--~--~~~~--~~~~~-~~~~~~~~~~~i~~~~~s~~~ 499 (515)
..... + ......+..+.+..+ ..+++...++.-++ + .+.. .. . +. +...+.+..++.++++
T Consensus 334 ~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~--~~i~---lp~~~~~~~~~~~~~~ 407 (711)
T 4hvt_A 334 ESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKP--VVLK---LPYQNAIFGMSSYEEE 407 (711)
T ss_dssp GGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCC--EEEC---CCSTTCEEEEECCTTC
T ss_pred ccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEE--eccC---CCCCeEEEEEeecCcC
Confidence 11122 2 223345667777765 57777777877665 2 2221 11 1 10 1112456667777777
Q ss_pred CEEE
Q 010206 500 NSIA 503 (515)
Q Consensus 500 ~~la 503 (515)
..++
T Consensus 408 ~~~~ 411 (711)
T 4hvt_A 408 EEAL 411 (711)
T ss_dssp SCEE
T ss_pred CEEE
Confidence 6555
No 347
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=57.21 E-value=1.1e+02 Score=30.44 Aligned_cols=39 Identities=13% Similarity=0.269 Sum_probs=31.0
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeecc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWN 155 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 155 (515)
..|.++.+ . ..++++-+.|.++|+|++.++++.......
T Consensus 222 ~~Is~~~~--~--~~fLftL~~Dh~LRiWsL~t~~lv~t~DL~ 260 (729)
T 3f7f_A 222 SVISCKLF--H--ERYLIVLTQNCHLKIWDLTSFTLIQDYDMV 260 (729)
T ss_dssp CEEEEEEE--T--TTEEEEEETTCEEEEEETTTTEEEEEEETT
T ss_pred ceEEEecc--C--CcEEEEEEcCCeEEEEEcCCCceEEeeccc
Confidence 34666655 2 469999999999999999999988776663
No 348
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=56.20 E-value=99 Score=26.70 Aligned_cols=64 Identities=8% Similarity=0.025 Sum_probs=34.4
Q ss_pred CCCEEEEe-C-----CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC-----CeEEEEec
Q 010206 245 DGETFISA-D-----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-----GSIRLIDM 313 (515)
Q Consensus 245 ~~~~l~s~-~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-----g~i~~wd~ 313 (515)
++++++.| . -..+.+||+.+.+-.. + . .+....... +++.. ++ .+++.|+.+ ..+.+||+
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~--~--~--~~p~~r~~~-~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~ 238 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRM--I--T--AMNTIRSGA-GVCVL-HN-CIYAAGGYDGQDQLNSVERYDV 238 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEE--C--C--CCSSCCBSC-EEEEE-TT-EEEEECCBCSSSBCCCEEEEET
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEee--C--C--CCCCccccc-eEEEE-CC-EEEEEeCCCCCCccceEEEEeC
Confidence 56666665 2 2468889987654221 1 0 111111111 22222 45 788888765 46888998
Q ss_pred Cccc
Q 010206 314 RQSA 317 (515)
Q Consensus 314 ~~~~ 317 (515)
.+.+
T Consensus 239 ~~~~ 242 (308)
T 1zgk_A 239 ETET 242 (308)
T ss_dssp TTTE
T ss_pred CCCc
Confidence 7754
No 349
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=53.72 E-value=1.2e+02 Score=26.85 Aligned_cols=12 Identities=8% Similarity=-0.061 Sum_probs=8.9
Q ss_pred CeEEEEecCccc
Q 010206 306 GSIRLIDMRQSA 317 (515)
Q Consensus 306 g~i~~wd~~~~~ 317 (515)
..+.+||+.+.+
T Consensus 168 ~~v~~yd~~~~~ 179 (357)
T 2uvk_A 168 KFLLSFDPSTQQ 179 (357)
T ss_dssp CEEEEEETTTTE
T ss_pred ccEEEEeCCCCc
Confidence 578889987754
No 350
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=53.63 E-value=1.3e+02 Score=27.18 Aligned_cols=58 Identities=16% Similarity=0.044 Sum_probs=31.3
Q ss_pred CCCEEEEecCCCcEEEEecCCCC------cceeeeccCCCceeeEEECCCCCeeEeecCCC-eEEE
Q 010206 410 DGGRVATGSYSNLFRVFGCSEGS------AESTTLEASKNPMRRQVQTPSRPSRPLGSLSG-VVRR 468 (515)
Q Consensus 410 ~~~~l~s~s~dg~i~iw~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~-~v~l 468 (515)
++.+|+.++..|.++.-.+.... .....++....-+....... ...++..+..| .+++
T Consensus 112 ~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~-~~~i~l~T~~G~~irf 176 (370)
T 3l6v_A 112 DNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDG-DRDVLLFASNGKTVRF 176 (370)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECS-CCEEEEEETTSEEEEE
T ss_pred CCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCC-CceEEEEeCCCeEEEE
Confidence 45689999999999988764321 11123333333333333333 34454455555 4555
No 351
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=50.25 E-value=1.3e+02 Score=26.24 Aligned_cols=99 Identities=16% Similarity=0.112 Sum_probs=48.1
Q ss_pred CCCEEEEecCCCcEEEEecCCCC------cceeeeccCCCceeeEEECCCCCeeEeecCCCe-EEEecCCCCC--cccc-
Q 010206 410 DGGRVATGSYSNLFRVFGCSEGS------AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV-VRRVKGADNS--ALDA- 479 (515)
Q Consensus 410 ~~~~l~s~s~dg~i~iw~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~-v~l~~~~~~~--~~~~- 479 (515)
++.+++..+..|.++--.+..-. .....+..+..-+.......+ ..++..+.+|. +++ .-.+.. +..-
T Consensus 108 ~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~-~~i~l~T~~G~~irf-~~~~v~~~gr~a~ 185 (307)
T 1zi0_A 108 EGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGE-DEVMLFSAEGKVVRF-KESSVRAMGCNTT 185 (307)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTT-CEEEEEETTSEEEEE-EGGGSCBCCTTCC
T ss_pred CCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCC-CEEEEECCCCcEEEE-EHHHcCccCCCCC
Confidence 56678889999999988764221 111233444333333334443 44555555554 455 111111 0000
Q ss_pred --CCccccccCCeeEEEEcCCCCEEEEEcCCcE
Q 010206 480 --NGNAFDFSMKLLHLAWHPSENSIACAASNSL 510 (515)
Q Consensus 480 --~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~ 510 (515)
....+.-...|.++..-+++..|++.+.+|.
T Consensus 186 Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~ 218 (307)
T 1zi0_A 186 GVRGIRLGEGDKVVSLIVPRGDGAILTATQNGY 218 (307)
T ss_dssp CEECCCCCTTCCEEEEECCCSSCEEEEEETTSE
T ss_pred CeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCc
Confidence 0011223456666665555566666665553
No 352
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=48.37 E-value=2.2e+02 Score=28.36 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=17.7
Q ss_pred cCCCcEEEEEecCC--eEEEEecCccc
Q 010206 293 PTHCNMLAYSSSKG--SIRLIDMRQSA 317 (515)
Q Consensus 293 p~~~~~l~~~~~dg--~i~~wd~~~~~ 317 (515)
.++ .+++.|+.++ .+.+||+.+..
T Consensus 499 ~~~-~iyv~GG~~~~~~v~~yd~~t~~ 524 (695)
T 2zwa_A 499 PDG-NVLILGGVTEGPAMLLYNVTEEI 524 (695)
T ss_dssp TTS-CEEEECCBCSSCSEEEEETTTTE
T ss_pred cCC-EEEEECCCCCCCCEEEEECCCCc
Confidence 356 7888888755 68899987754
No 353
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=47.92 E-value=49 Score=35.43 Aligned_cols=33 Identities=9% Similarity=-0.019 Sum_probs=27.8
Q ss_pred eeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc
Q 010206 402 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 402 v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
+.+++..++..++++-+.|+++|+|++.+++++
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v 272 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCV 272 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeE
Confidence 346777888999999999999999999988543
No 354
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=47.69 E-value=39 Score=36.22 Aligned_cols=39 Identities=8% Similarity=0.198 Sum_probs=29.9
Q ss_pred eEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeecc
Q 010206 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWN 155 (515)
Q Consensus 115 v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 155 (515)
+.+++. ..+..++++-+.|+++|+|++.++++.......
T Consensus 240 ~vs~~~--~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 240 IISMIF--LSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp BSCCEE--ETTTTEEEEEBTTCEEEEEETTTTEEEEEEECC
T ss_pred eEEeec--cCCccEEEEEeCCCEEEEEECCCCCeEEeechh
Confidence 444444 345568999999999999999999887776554
No 355
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=45.70 E-value=1.5e+02 Score=25.63 Aligned_cols=26 Identities=8% Similarity=0.236 Sum_probs=16.8
Q ss_pred CcEEEeeeCC--------CeEEEEEccCCeeEEE
Q 010206 126 SALYLLSTND--------KTIKLWKVQEKKVKKV 151 (515)
Q Consensus 126 ~~~l~~~~~d--------~~i~iwd~~~~~~~~~ 151 (515)
+..++.|+.+ ..+.+||..+.+....
T Consensus 99 ~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~ 132 (315)
T 4asc_A 99 NSIYVVGGREIKDGERCLDSVMCYDRLSFKWGES 132 (315)
T ss_dssp TEEEEECCEESSTTCCBCCCEEEEETTTTEEEEC
T ss_pred CEEEEEeCCcCCCCCcccceEEEECCCCCcEeEC
Confidence 4566666532 4588899988765544
No 356
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=44.05 E-value=1.7e+02 Score=25.77 Aligned_cols=97 Identities=11% Similarity=0.040 Sum_probs=46.5
Q ss_pred CCEEEEecCCCcEEEEecCCCC-------cceeeeccCCCceeeEEECCCCCeeEeecCCCe-EEEecCCCCC--ccc--
Q 010206 411 GGRVATGSYSNLFRVFGCSEGS-------AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV-VRRVKGADNS--ALD-- 478 (515)
Q Consensus 411 ~~~l~s~s~dg~i~iw~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~-v~l~~~~~~~--~~~-- 478 (515)
+.+|+..+.+|.++--.+..-. .....+... +.+-.+........++..+.+|. +++ ...+.. +..
T Consensus 106 ~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~l~T~~G~~irf-~~~ev~~~gR~a~ 183 (323)
T 1wp5_A 106 NGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELFLVTHNGYALWF-DESEVSIVGVRAA 183 (323)
T ss_dssp SCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEEEEETTSEEEEE-EGGGSCBCCSSCC
T ss_pred CceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEEEEeCCCcEEEE-EHHHCcccCCCCc
Confidence 6688889999999988774221 111233333 33333333333444555555555 454 111111 000
Q ss_pred -cCCccccccCCeeEEEEcCCCC-EEEEEcCCc
Q 010206 479 -ANGNAFDFSMKLLHLAWHPSEN-SIACAASNS 509 (515)
Q Consensus 479 -~~~~~~~~~~~i~~~~~s~~~~-~la~~~~~~ 509 (515)
.....+.-...|.++..-+++. .|.+.+.+|
T Consensus 184 GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G 216 (323)
T 1wp5_A 184 GVKGMNLKEGDYIVSGQLITSKDESIVVATQRG 216 (323)
T ss_dssp CEECCCCCTTCCEEEEEEECCTTCEEEEEETTS
T ss_pred CEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCC
Confidence 0111122345566665544444 566655554
No 357
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=42.60 E-value=1.9e+02 Score=26.11 Aligned_cols=74 Identities=8% Similarity=0.065 Sum_probs=41.8
Q ss_pred CCeEEEEecCC----CCEEEEe--CCCcEEEEe---CCCCCcccceecccCccccccC---CceEEEEEe-cCCCcEEEE
Q 010206 235 YHINSISNNSD----GETFISA--DDLRINLWN---LEISNQSFNIVDVKPANMEDLT---EVITSAEFH-PTHCNMLAY 301 (515)
Q Consensus 235 ~~v~~~~~~~~----~~~l~s~--~d~~i~iwd---~~~~~~~~~~~~~~~~~~~~~~---~~i~~i~~~-p~~~~~l~~ 301 (515)
..+..|+++|+ ++.|.-. ....+.--. ++.......+ ...+.. ..-..+++. .+| .++++
T Consensus 220 ~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v------~~~G~kg~~s~~~~~~~D~~~G-~ly~~ 292 (381)
T 3q6k_A 220 AGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNP------ELLGNRGKYNDAIALAYDPKTK-VIFFA 292 (381)
T ss_dssp CCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCC------EEEEECCTTCCEEEEEECTTTC-EEEEE
T ss_pred cCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhce------EEeeecCCCCCcceEEEeCCCC-eEEEE
Confidence 56889999998 6777765 333333222 1111111000 111222 233456675 566 77777
Q ss_pred EecCCeEEEEecCc
Q 010206 302 SSSKGSIRLIDMRQ 315 (515)
Q Consensus 302 ~~~dg~i~~wd~~~ 315 (515)
--....|..|+..+
T Consensus 293 ~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 293 EANTKQVSCWNTQK 306 (381)
T ss_dssp ESSSSEEEEEETTS
T ss_pred eccCCeEEEEeCCC
Confidence 77888999999875
No 358
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=37.57 E-value=85 Score=30.51 Aligned_cols=60 Identities=13% Similarity=0.024 Sum_probs=34.3
Q ss_pred ceeEEEEccCCCEEEEEcCC-----------eEEEEEeeCC-CCCeeeEeeeccccccccccccCCCccceeeEEEcCCC
Q 010206 344 SISDIKFARNGRHILSRDYM-----------TLKLWDINMD-SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 411 (515)
Q Consensus 344 ~i~~~~~s~~~~~l~s~~~~-----------~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 411 (515)
..-.|+|+|.|++++.-+.+ .-.+|-.... ++....+.++... +++.++|+||+
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~ga--------------E~TG~~fspDg 542 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGC--------------EVTGISFSPDQ 542 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTC--------------EEEEEEECTTS
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCc--------------cCcCeeECCCC
Confidence 45678999999976653211 1233333222 3333333333221 25689999999
Q ss_pred CEEEEe
Q 010206 412 GRVATG 417 (515)
Q Consensus 412 ~~l~s~ 417 (515)
+.|+..
T Consensus 543 ~tlfvn 548 (592)
T 3zwu_A 543 KTLFVG 548 (592)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 988765
No 359
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=37.52 E-value=2.1e+02 Score=25.14 Aligned_cols=209 Identities=8% Similarity=-0.011 Sum_probs=0.0
Q ss_pred cCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeC
Q 010206 293 PTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM 372 (515)
Q Consensus 293 p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~ 372 (515)
... ..+++-+.+|.|+--.+.+.....+.-+-..... +......+..+..+.....++..+.|.++-....
T Consensus 1 ~~E-~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~-------~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~- 71 (327)
T 3uc1_A 1 NAE-DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAG-------LKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAY- 71 (327)
T ss_dssp CCC-EEEEEEETTSEEEEEEHHHHHHHC--------CC-------CCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGG-
T ss_pred CCc-cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccc-------cCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHH-
Q ss_pred CCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCC------CCcceeeeccCCCcee
Q 010206 373 DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE------GSAESTTLEASKNPMR 446 (515)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~------~~~~~~~~~~~~~~v~ 446 (515)
.-+.............+..+...+.+..+..+.=-++..+++..+.+|.++--.+.. .+.....++....-+.
T Consensus 72 -~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~ 150 (327)
T 3uc1_A 72 -DLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVG 150 (327)
T ss_dssp -GSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEE
T ss_pred -HCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEE
Q ss_pred eEEECCCCCeeEeecCCCeEEE-ec--CCCCCccccCCccc---cccCCeeEEEEcCCCCEEEEEcCCcEE
Q 010206 447 RQVQTPSRPSRPLGSLSGVVRR-VK--GADNSALDANGNAF---DFSMKLLHLAWHPSENSIACAASNSLY 511 (515)
Q Consensus 447 ~~~~~~~~~~l~s~~~d~~v~l-~~--~~~~~~~~~~~~~~---~~~~~i~~~~~s~~~~~la~~~~~~~~ 511 (515)
..........++..+....+++ .. .-...+..-.+... .-...|.++..-+++..|+..+.+|..
T Consensus 151 ~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~ 221 (327)
T 3uc1_A 151 AVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYA 221 (327)
T ss_dssp EEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEE
T ss_pred EEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcE
No 360
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=36.86 E-value=1e+02 Score=29.91 Aligned_cols=56 Identities=9% Similarity=-0.011 Sum_probs=37.4
Q ss_pred eEEEcCCCCEEEEecCC------------CcEEEEecCCCCcceeeeccC-CCceeeEEECCCCCeeEee
Q 010206 404 ECCLSGDGGRVATGSYS------------NLFRVFGCSEGSAESTTLEAS-KNPMRRQVQTPSRPSRPLG 460 (515)
Q Consensus 404 ~~~~s~~~~~l~s~s~d------------g~i~iw~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~ 460 (515)
.|+|+|.|++++.-..+ +.+.+.+..++ .+...+.+. ...++.++|+||+++|...
T Consensus 480 NL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g-~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 480 GLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATG-EIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTC-CEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred ceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCC-eEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 68999999977654322 24555566655 343444443 5788999999999887554
No 361
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=35.98 E-value=1.1e+02 Score=30.41 Aligned_cols=25 Identities=0% Similarity=-0.116 Sum_probs=21.8
Q ss_pred cCCCCEEEEecCCCcEEEEecCCCC
Q 010206 408 SGDGGRVATGSYSNLFRVFGCSEGS 432 (515)
Q Consensus 408 s~~~~~l~s~s~dg~i~iw~~~~~~ 432 (515)
..+..+|++-+.|.++|+|+++++.
T Consensus 228 ~~~~~fLftL~~Dh~LRiWsL~t~~ 252 (729)
T 3f7f_A 228 LFHERYLIVLTQNCHLKIWDLTSFT 252 (729)
T ss_dssp EETTTEEEEEETTCEEEEEETTTTE
T ss_pred ccCCcEEEEEEcCCeEEEEEcCCCc
Confidence 3357899999999999999999984
No 362
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=35.32 E-value=1.4e+02 Score=28.88 Aligned_cols=61 Identities=15% Similarity=0.010 Sum_probs=35.1
Q ss_pred cceeEEEEccCCCEEEEEcC-----------C--eEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcC
Q 010206 343 ASISDIKFARNGRHILSRDY-----------M--TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 409 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~~~-----------~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 409 (515)
.....|.|+++|.+.+.-+. + .+..++..+ ++....+...... ..+.++|+|
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~t-Gel~~fl~~P~~a--------------EpnGiafSP 540 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT-GEIRRFMVGPIGC--------------EVTGISFSP 540 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTT-CCEEEEEECCTTC--------------EEEEEEECT
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCC-CeEEEEEeCCCCc--------------cccCCEECC
Confidence 45678999999988874221 1 344444332 3332222222111 135899999
Q ss_pred CCCEEEEec
Q 010206 410 DGGRVATGS 418 (515)
Q Consensus 410 ~~~~l~s~s 418 (515)
|++.|+.+-
T Consensus 541 D~ktLfV~v 549 (592)
T 4a9v_A 541 DQKTLFVGI 549 (592)
T ss_dssp TSSEEEEEE
T ss_pred CCCEEEEEE
Confidence 999887653
No 363
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=34.08 E-value=2.3e+02 Score=24.40 Aligned_cols=54 Identities=7% Similarity=-0.004 Sum_probs=28.2
Q ss_pred CCCCEEEEecC-C-----CcEEEEecCCCCcce-eeeccCCCceeeEEECCCCCeeEeecCCC
Q 010206 409 GDGGRVATGSY-S-----NLFRVFGCSEGSAES-TTLEASKNPMRRQVQTPSRPSRPLGSLSG 464 (515)
Q Consensus 409 ~~~~~l~s~s~-d-----g~i~iw~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 464 (515)
-++++++.|+. + ..+.+||+.+..... ..+......- + +..-+++.++.|+.++
T Consensus 147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~-~~~~~~~iyv~GG~~~ 207 (315)
T 4asc_A 147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLF-G-ATVHDGRIIVAAGVTD 207 (315)
T ss_dssp ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSC-E-EEEETTEEEEEEEECS
T ss_pred ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhce-E-EEEECCEEEEEeccCC
Confidence 36677777765 2 468899988763332 1111111111 1 2222667777777654
No 364
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=31.44 E-value=2.5e+02 Score=27.11 Aligned_cols=61 Identities=8% Similarity=-0.044 Sum_probs=39.7
Q ss_pred ccceeeEEEcCCCCEEEEecC------------CCcEEEEecCCCCcceeeeccC-CCceeeEEECCCCCeeEee
Q 010206 399 IFDKFECCLSGDGGRVATGSY------------SNLFRVFGCSEGSAESTTLEAS-KNPMRRQVQTPSRPSRPLG 460 (515)
Q Consensus 399 ~~~v~~~~~s~~~~~l~s~s~------------dg~i~iw~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~ 460 (515)
+..--.++|+++|.+.+.... .+.+..++..++ .+...+... ...++.++|+||+++|...
T Consensus 475 fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tG-el~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 475 FNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATG-EIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTC-CEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred cCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCC-eEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 334457999999998773221 125666676655 343444433 4578999999999887554
No 365
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=30.66 E-value=2.7e+02 Score=24.24 Aligned_cols=202 Identities=11% Similarity=0.004 Sum_probs=87.1
Q ss_pred cCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEE-cCCeEEEEEee
Q 010206 293 PTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDIN 371 (515)
Q Consensus 293 p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~~~~i~iwd~~ 371 (515)
|+. ..+++.+.+|.|+--.+..-.......+-... ..+... ..+..+........++.. +.|.++-+...
T Consensus 6 ~~e-~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~-------~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~ 76 (312)
T 1suu_A 6 QKE-NIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSS-------FDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAY 76 (312)
T ss_dssp --C-EEEEEEETTCBEEEEEGGGSCBCCSSCCCEEC-------CCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGG
T ss_pred CCC-CEEEEEeCCCEEEEeEHHHhhccccCCCCcee-------cccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHH
Confidence 344 67888999999998766443211100000000 001111 223333333333444444 44777666654
Q ss_pred CCCCCeeeEeeeccccccccccccCCCccceeeEEEcC---CCCEEEEecCCCcEEEEecCCC------CcceeeeccCC
Q 010206 372 MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG---DGGRVATGSYSNLFRVFGCSEG------SAESTTLEASK 442 (515)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~s~s~dg~i~iw~~~~~------~~~~~~~~~~~ 442 (515)
. -+................+...+.+. .+..-+ +..+|+..+..|.++.-.+..- +.....+.. .
T Consensus 77 ~--ip~~~r~~~G~~i~~~l~l~~~e~i~---~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~ 150 (312)
T 1suu_A 77 E--IKDSSRASKGQNISELINLGDQEEIL---TIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-K 150 (312)
T ss_dssp G--SCC-------CBGGGTSCCCTTCCEE---EEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-T
T ss_pred H--CCCCCccCCCcChhhccCCCCCCEEE---EEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-C
Confidence 2 11111111111111122233333332 222222 4667888899999998877432 111123444 3
Q ss_pred CceeeEEECCCCCeeEeecCCCeEEEecCCCC--Cccc---cCCccccccCCeeEEEEcCCCCEEEEEcCCc
Q 010206 443 NPMRRQVQTPSRPSRPLGSLSGVVRRVKGADN--SALD---ANGNAFDFSMKLLHLAWHPSENSIACAASNS 509 (515)
Q Consensus 443 ~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~--~~~~---~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~ 509 (515)
+.+-.+....+...++..+.+|....+.-.+. .+.. .....+.-...|..+..-+++..|++.+.+|
T Consensus 151 d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G 222 (312)
T 1suu_A 151 DFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENG 222 (312)
T ss_dssp CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTS
T ss_pred CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCC
Confidence 33434433333455666666665544111111 1100 0011112245666766655566666666555
No 366
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=30.19 E-value=3e+02 Score=24.66 Aligned_cols=70 Identities=17% Similarity=0.194 Sum_probs=37.2
Q ss_pred CceeeEEECCC-CCeeEeecCCCeEEE-ecCCCCCccccCC---ccc-----cccCCeeEEEEcCC-CCEEEEEcCCcEE
Q 010206 443 NPMRRQVQTPS-RPSRPLGSLSGVVRR-VKGADNSALDANG---NAF-----DFSMKLLHLAWHPS-ENSIACAASNSLY 511 (515)
Q Consensus 443 ~~v~~~~~~~~-~~~l~s~~~d~~v~l-~~~~~~~~~~~~~---~~~-----~~~~~i~~~~~s~~-~~~la~~~~~~~~ 511 (515)
..+..+.+.|. ...+..+..++.+.. .++.+.+...... ..+ .....+.+++++|+ ...|.+++..+++
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~ 256 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIY 256 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEE
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEE
Confidence 35678888874 334444444444444 4444444211100 000 01235899999996 4667777777765
Q ss_pred E
Q 010206 512 M 512 (515)
Q Consensus 512 i 512 (515)
.
T Consensus 257 ~ 257 (394)
T 3b7f_A 257 R 257 (394)
T ss_dssp E
T ss_pred E
Confidence 4
No 367
>2loj_A Putative cytoplasmic protein; pathogenic bacterial protein, PSI-biology, northeast structu genomics consortium (NESG); NMR {Salmonella enterica subsp}
Probab=27.52 E-value=1.2e+02 Score=19.00 Aligned_cols=40 Identities=13% Similarity=0.056 Sum_probs=29.4
Q ss_pred ccccccchhhhhcccccccccccccceEEEEECCCCCeEEe
Q 010206 12 AQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLAT 52 (515)
Q Consensus 12 ~~~~~w~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~las 52 (515)
.....++-.+.|+.... ..+.|.+.+..+.....|+++++
T Consensus 23 ~~~~~i~S~~Ll~g~~~-v~I~H~G~~Y~LR~Tr~GKLILT 62 (63)
T 2loj_A 23 AAERRVNSQALLGPDGK-VIIDHNGQEYLLRKTQAGKLLLT 62 (63)
T ss_dssp SCCCEEEGGGSSTTTCE-EEEEETTEEEEEEEETTTEEEEE
T ss_pred CccceEcHHHHhCCCCE-EEEEeCCeEEEeEEccCCceeec
Confidence 44456776677664333 46789999999999999998875
No 368
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=26.07 E-value=4.9e+02 Score=25.78 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=16.9
Q ss_pred CCcEEEeeeCCC--eEEEEEccCCeeE
Q 010206 125 NSALYLLSTNDK--TIKLWKVQEKKVK 149 (515)
Q Consensus 125 ~~~~l~~~~~d~--~i~iwd~~~~~~~ 149 (515)
++..++.|+.++ .+.+||..+....
T Consensus 500 ~~~iyv~GG~~~~~~v~~yd~~t~~W~ 526 (695)
T 2zwa_A 500 DGNVLILGGVTEGPAMLLYNVTEEIFK 526 (695)
T ss_dssp TSCEEEECCBCSSCSEEEEETTTTEEE
T ss_pred CCEEEEECCCCCCCCEEEEECCCCceE
Confidence 456777776544 6888888776543
No 369
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=25.38 E-value=3.2e+02 Score=23.41 Aligned_cols=226 Identities=8% Similarity=0.104 Sum_probs=0.0
Q ss_pred eEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEEEeecCCCcE
Q 010206 49 HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSAL 128 (515)
Q Consensus 49 ~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~ 128 (515)
+++.|+.+ +.+||..+.+. ......... .....-.. ..++..
T Consensus 18 i~~~GG~~--~~~yd~~~~~W----------------------~~~~~~~~~------------~r~~~~~~--~~~~~l 59 (318)
T 2woz_A 18 ILLVNDTA--AVAYDPMENEC----------------------YLTALAEQI------------PRNHSSIV--TQQNQV 59 (318)
T ss_dssp EEEECSSE--EEEEETTTTEE----------------------EEEEECTTS------------CSSEEEEE--CSSSCE
T ss_pred hhhccccc--eEEECCCCCce----------------------ecccCCccC------------CccceEEE--EECCEE
Q ss_pred EEeee----CCCe-------EEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCC
Q 010206 129 YLLST----NDKT-------IKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS 197 (515)
Q Consensus 129 l~~~~----~d~~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 197 (515)
++.|+ .++. +..||..+.+........
T Consensus 60 yv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p------------------------------------------ 97 (318)
T 2woz_A 60 YVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLP------------------------------------------ 97 (318)
T ss_dssp EEEESSCC-------CCCBEEEEEETTTTEEEECSCBS------------------------------------------
T ss_pred EEECCcccCccccCCCccccEEEEeCCCCcEEECCCCC------------------------------------------
Q ss_pred CCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CC-------CcEEEEeCCCCCccc
Q 010206 198 SFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD-------LRINLWNLEISNQSF 269 (515)
Q Consensus 198 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d-------~~i~iwd~~~~~~~~ 269 (515)
.......+..+ ++++++.| .+ ..+.+||+.+.+-.
T Consensus 98 --------------------------------~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~- 140 (318)
T 2woz_A 98 --------------------------------SARCLFGLGEV----DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWS- 140 (318)
T ss_dssp --------------------------------SCBCSCEEEEE----TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEE-
T ss_pred --------------------------------ccccccceEEE----CCEEEEEcCccCCCCcccceEEEEeCCCCCEe-
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEec------CCeEEEEecCcccccccccceeeeccCCCcccccccccc
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS------KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 343 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~------dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (515)
.+.....+....+....+..+++.|+. -..+.+||+.+.+- ...-.....
T Consensus 141 --------~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W----------------~~~~~~p~~ 196 (318)
T 2woz_A 141 --------EVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW----------------KDLAPMKTP 196 (318)
T ss_dssp --------EECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEE----------------EEECCCSSC
T ss_pred --------ECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEE----------------EECCCCCCC
Q ss_pred ceeEEEEccCCCEEEEEc-----C-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEe
Q 010206 344 SISDIKFARNGRHILSRD-----Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 417 (515)
Q Consensus 344 ~i~~~~~s~~~~~l~s~~-----~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 417 (515)
.....+..-+++.++.|+ . ..+.+||+.+ .+-...-........ ..+..-++++++.|
T Consensus 197 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~-~~W~~~~~~p~~r~~---------------~~~~~~~~~i~v~G 260 (318)
T 2woz_A 197 RSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKT-NKWEVMTEFPQERSS---------------ISLVSLAGSLYAIG 260 (318)
T ss_dssp CBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTT-CCEEECCCCSSCCBS---------------CEEEEETTEEEEEC
T ss_pred cccceEEEECCEEEEEcCcCCCCccceEEEEECCC-CeEEECCCCCCcccc---------------eEEEEECCEEEEEC
Q ss_pred cCC--------------CcEEEEecCCC
Q 010206 418 SYS--------------NLFRVFGCSEG 431 (515)
Q Consensus 418 s~d--------------g~i~iw~~~~~ 431 (515)
+.+ ..+.+||+.+.
T Consensus 261 G~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 261 GFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp CBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred CeeccCCCCceeccceeeeEEEEeCCCC
No 370
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=21.52 E-value=3.8e+02 Score=22.79 Aligned_cols=178 Identities=10% Similarity=0.020 Sum_probs=88.6
Q ss_pred CeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCc
Q 010206 236 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 315 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~ 315 (515)
.|..++.......++ . |+.|..|-.....++-. | . .....|..++..... .++. . ||.+..|-...
T Consensus 25 ~i~~ia~G~~h~~~l-~-~G~v~~wG~n~~Gqlg~-----p-~--~~~~~i~~ia~G~~h--s~~l-~-~G~v~~wG~n~ 90 (282)
T 3qhy_B 25 GVDAIAGGYFHGLAL-K-GGKVLGWGANLNGQLTM-----P-A--ATQSGVDAIAAGNYH--SLAL-K-DGEVIAWGGNE 90 (282)
T ss_dssp SCCEEEECSSEEEEE-E-TTEEEEEECCSSSTTSC-----C-G--GGGSCCCEEEECSSE--EEEE-E-TTEEEEEECCT
T ss_pred CCcEEEeCCCeEEEE-E-CCEEEEEeCCCCCCCCC-----C-c--cCCCCEEEEEeCCCE--EEEE-E-CCEEEEeeCCC
Confidence 455666544433333 3 88888887665443311 1 0 113357777776543 4444 4 89999997654
Q ss_pred ccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeecccccccccccc
Q 010206 316 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYE 395 (515)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (515)
...+.. | .. ....|..++.......+++ +|.|..|-....++.-....
T Consensus 91 ~Gqlg~----------P--~~----~~~~v~~ia~G~~hs~al~--~G~v~~wG~n~~gqlg~~~~-------------- 138 (282)
T 3qhy_B 91 DGQTTV----------P--AE----ARSGVDAIAAGAWASYALK--DGKVIAWGDDSDGQTTVPAE-------------- 138 (282)
T ss_dssp TSTTCC----------C--GG----GSSSEEEEEEETTEEEEEE--TTEEEEEECCTTSTTSCCGG--------------
T ss_pred CCCCCC----------C--cc----cCCCeEEEECcCCEEEEEe--CCeEEEecCCCCCcCCCCcc--------------
Confidence 322110 0 00 0135777777654434444 88999998765333210000
Q ss_pred CCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 396 NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 396 ~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
....|..++...+ +.+.-. ||.|+.|-.....++-.. ..-...+..++...... ++. .||.+..
T Consensus 139 --~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gqlg~p-~~~~~~v~~i~~G~~hs-~al--~~G~v~~ 202 (282)
T 3qhy_B 139 --AQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQTTVP-AEAQSGVDDVAGGIFHS-LAL--KDGKVIA 202 (282)
T ss_dssp --GGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTSCC-GGGGSSEEEEEECSSEE-EEE--ETTEEEE
T ss_pred --CCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCCCCCc-eecCCCeEEEEecCCEE-EEE--ECCeEEE
Confidence 0011334444332 222233 688999977654333211 11124455555544322 233 4777766
Done!