Your job contains 1 sequence.
>010207
MGVELPIDHAESHEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPD
NRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGK
YVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPI
VVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDD
ILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFE
HLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFL
SRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIM
DIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLES
ELSRAFGGLERLDMFFPFDPCLLKKSDRFANATLP
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 010207
(515 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2061574 - symbol:AT2G34750 species:3702 "Arabi... 696 1.7e-139 2
TAIR|locus:2204609 - symbol:AT1G30590 species:3702 "Arabi... 1206 1.2e-122 1
TAIR|locus:2056063 - symbol:AT2G39240 species:3702 "Arabi... 1011 5.4e-102 1
UNIPROTKB|B4E3T2 - symbol:RRN3 "cDNA FLJ53965, highly sim... 245 7.9e-27 2
UNIPROTKB|Q9NYV6 - symbol:RRN3 "RNA polymerase I-specific... 245 9.8e-27 2
MGI|MGI:1925255 - symbol:Rrn3 "RRN3 RNA polymerase I tran... 236 1.6e-26 2
RGD|1305001 - symbol:Rrn3 "RRN3 RNA polymerase I transcri... 241 6.3e-26 2
UNIPROTKB|F5H148 - symbol:RRN3 "RNA polymerase I-specific... 245 9.0e-26 2
UNIPROTKB|E1B883 - symbol:RRN3 "Uncharacterized protein" ... 248 1.9e-25 2
UNIPROTKB|F1NIF7 - symbol:RRN3 "Uncharacterized protein" ... 228 2.5e-24 2
ZFIN|ZDB-GENE-080225-1 - symbol:rrn3 "RRN3 RNA polymerase... 224 1.4e-23 2
POMBASE|SPAC18G6.11c - symbol:rrn3 "ribosomal DNA (rDNA) ... 217 3.3e-22 2
UNIPROTKB|B4E0J7 - symbol:RRN3 "cDNA FLJ52380, highly sim... 245 1.8e-20 2
UNIPROTKB|I3LD85 - symbol:RRN3 "Uncharacterized protein" ... 256 1.9e-20 2
FB|FBgn0032988 - symbol:Tif-IA "Tif-IA" species:7227 "Dro... 207 2.9e-14 2
UNIPROTKB|G4MUE6 - symbol:MGG_01654 "Uncharacterized prot... 119 5.1e-11 3
SGD|S000001608 - symbol:RRN3 "Protein required for transc... 119 3.7e-06 3
CGD|CAL0002535 - symbol:RRN3 species:5476 "Candida albica... 139 4.6e-06 1
WB|WBGene00007980 - symbol:C36E8.1 species:6239 "Caenorha... 122 5.1e-05 2
>TAIR|locus:2061574 [details] [associations]
symbol:AT2G34750 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0006360 "transcription from
RNA polymerase I promoter" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] Pfam:PF05327 EMBL:CP002685
GO:GO:0003743 UniGene:At.12517 KO:K15216 InterPro:IPR007991
PANTHER:PTHR12790 OMA:MYVLCFR HOGENOM:HOG000030489
ProtClustDB:CLSN2682307 EMBL:AY096642 EMBL:AY142672 IPI:IPI00528068
RefSeq:NP_850236.1 ProteinModelPortal:Q8L643 IntAct:Q8L643
STRING:Q8L643 PRIDE:Q8L643 EnsemblPlants:AT2G34750.1 GeneID:818040
KEGG:ath:AT2G34750 TAIR:At2g34750 InParanoid:Q8L643
PhylomeDB:Q8L643 Genevestigator:Q8L643 Uniprot:Q8L643
Length = 613
Score = 696 (250.1 bits), Expect = 1.7e-139, Sum P(2) = 1.7e-139
Identities = 146/299 (48%), Positives = 205/299 (68%)
Query: 15 MEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVM--HLSGRLDPDNRALLETSLKAL 72
+++V++SD +LV VR+ALTSV++GD+D Y+++V VM + DPD A LET LKAL
Sbjct: 20 VDNVDLSDTQLVQTVRKALTSVKTGDSDLYSEMVGVMARDIKEFKDPDVVAQLETVLKAL 79
Query: 73 SGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSN 132
SGAV+ ID+ HH+ LL ++F M +W++ PDVMDAL L+ISLA ++GKY+DSCL MLVSN
Sbjct: 80 SGAVACIDVLHHQKLLSALFRMKLWDHRPDVMDALVNLVISLAVTSGKYLDSCLNMLVSN 139
Query: 133 FTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKH 192
F PP + ++ L L +K VLSRVHAAL I LVPL P+RL+P++ Q+MP +H K
Sbjct: 140 FVPPPWVVNNLSHSRILNKKIDVLSRVHAALLKISILVPLTPSRLVPMLFQQMPKMHKKD 199
Query: 193 ERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFX 252
IV+Y+E+ LKLE+S++G++ S +L V++RL DLD+EI WDDI DD S+G+F
Sbjct: 200 HS---IVIYVESLLKLENSSIGQVGGSMILGMVMERLRDLDLEIEWDDIPQDDSSRGMFD 256
Query: 253 XXXXXXXXXXXXXXXXXXXLPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRL 311
LP G L + + G+++++LLD LMV+ FEHLESC+ GRL
Sbjct: 257 MELEDAAEGTMNDGDE---LPVGPLKQDTSDGSIVSKLLDKLMVVAFEHLESCQNDGRL 312
Score = 690 (248.0 bits), Expect = 1.7e-139, Sum P(2) = 1.7e-139
Identities = 130/221 (58%), Positives = 170/221 (76%)
Query: 289 ELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLT 348
++ +SL +FE+ + +F++FYAC+LDPENCG++FA+ L ++F+S T
Sbjct: 314 QVFESLFK-SFENFILNTYKSKFTQFLIFYACSLDPENCGVKFASKLVEIFLSSNKHVAT 372
Query: 349 RMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKAHRVFYSGCQAI 408
RMSAV+YLASFL+R +FL F+ S+LKRL+D C+ YC D P+AH++F+SGCQAI
Sbjct: 373 RMSAVAYLASFLARGKFLPVSFVASMLKRLIDECVGYCRTCNDDTRPEAHQIFFSGCQAI 432
Query: 409 MYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTV 468
MYVLCFRMRSI+D+PR +SQL PLE++L H LNPL VCLPSVV+EFL+Q+K LF V
Sbjct: 433 MYVLCFRMRSILDVPRFRSQLT--PLESILMHKLNPLMVCLPSVVAEFLRQAKEGGLFIV 490
Query: 469 SETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
S++F+F+DLLESELSRAFGG ERLD FFPFDPCLLK S+ F
Sbjct: 491 SDSFIFDDLLESELSRAFGGFERLDTFFPFDPCLLKSSNSF 531
>TAIR|locus:2204609 [details] [associations]
symbol:AT1G30590 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0006360 "transcription from
RNA polymerase I promoter" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] Pfam:PF05327 EMBL:CP002684
GO:GO:0003743 KO:K15216 InterPro:IPR007991 PANTHER:PTHR12790
IPI:IPI00533308 RefSeq:NP_174347.1 UniGene:At.65753
ProteinModelPortal:F4I6D6 PRIDE:F4I6D6 EnsemblPlants:AT1G30590.1
GeneID:839939 KEGG:ath:AT1G30590 OMA:CIKLDVE Uniprot:F4I6D6
Length = 604
Score = 1206 (429.6 bits), Expect = 1.2e-122, P = 1.2e-122
Identities = 267/535 (49%), Positives = 353/535 (65%)
Query: 1 MGVE-LPIDHAESHEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDP 59
MG E P S+ M++ +D +LV+ VR+AL SVQ+GD D+Y+QL VM L+ D
Sbjct: 1 MGAEEFPSVPFNSNAMDNAEYTDTDLVFAVRKALASVQNGDTDDYSQLKTVMCLTEDADF 60
Query: 60 DNRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMW--NYDPDVMDALKGLIISLAAS 117
D A LET LK+LS +V++ID+ HH+ LL + MS+W ++ P VMDAL LIISLAA+
Sbjct: 61 DAVAQLETVLKSLSVSVAWIDLVHHKDLLEA---MSLWYHSHRPSVMDALVDLIISLAAT 117
Query: 118 NGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRL 177
+GKY+D CL MLV NF+ P+ F K+ + +++ +V RVHAAL I L+PLAP L
Sbjct: 118 SGKYLDPCLNMLVRNFSQPT-FKHKVSQTQLVKKMQEVHPRVHAALHKISYLIPLAPWNL 176
Query: 178 LPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIG 237
+ I+ Q M + K IV Y++N L+LE+S++GE+V S +LM V++R++DLD+ G
Sbjct: 177 VSILAQNMRKIDKKDPS---IVTYVDNLLRLENSSIGEVVGSVILMMVMERMLDLDLVSG 233
Query: 238 WDDILHDDFSKGIFXXXXXXXXXXXXXXXXXXXXLPSGSLSRKSLSGNLIAELLDSLMVL 297
DD + G+F P G+L + + GN+++ELLD LMVL
Sbjct: 234 CDDS-----NGGMFDMELEDAVESTMNEGDE---FPVGALKQNTSGGNVVSELLDKLMVL 285
Query: 298 TFEHLESCEGTGRLIE-----------------------FVMFYACALDPENCGLRFATM 334
F HLESC+ + RL E F+MFYAC+LDPENCG+RFA+
Sbjct: 286 FFHHLESCQNSDRLDEVFEILFKSFENYILNTYKTKFSQFLMFYACSLDPENCGVRFASK 345
Query: 335 LADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDIN 394
L D+++S LTRMSAV+YLAS+LSR +FL F+ S+LKRLVD C EYC D+
Sbjct: 346 LLDIYLSSNTCRLTRMSAVAYLASYLSRGKFLPASFVASMLKRLVDECAEYCGTCNDDVK 405
Query: 395 PKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVS 454
P+AH+VFYSGCQAI+YVLCFRMRSI++IPR +SQ LE++L H LNPL VCLPSVVS
Sbjct: 406 PEAHQVFYSGCQAILYVLCFRMRSIVEIPRFQSQF--RSLESILSHKLNPLLVCLPSVVS 463
Query: 455 EFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
EFL+Q+KA LF VSE+F+F+DL ESELSRAFGG ERLD FFPFDPCLLK S +
Sbjct: 464 EFLKQAKAGGLFIVSESFIFDDLHESELSRAFGGFERLDTFFPFDPCLLKMSSSY 518
>TAIR|locus:2056063 [details] [associations]
symbol:AT2G39240 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0006360 "transcription from
RNA polymerase I promoter" evidence=ISS] Pfam:PF05327 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003743 KO:K15216
InterPro:IPR007991 PANTHER:PTHR12790 EMBL:DQ446608 IPI:IPI00533789
RefSeq:NP_181457.2 UniGene:At.53072 ProteinModelPortal:Q1PEV9
STRING:Q1PEV9 EnsemblPlants:AT2G39240.1 GeneID:818509
KEGG:ath:AT2G39240 TAIR:At2g39240 HOGENOM:HOG000030489
InParanoid:Q1PEV9 OMA:CNDDARP PhylomeDB:Q1PEV9
ProtClustDB:CLSN2682307 Genevestigator:Q1PEV9 Uniprot:Q1PEV9
Length = 573
Score = 1011 (360.9 bits), Expect = 5.4e-102, P = 5.4e-102
Identities = 237/512 (46%), Positives = 319/512 (62%)
Query: 12 SHEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNR--------- 62
+ E+E ++SD LV +RE L S QSGD D YN+LV +M++ + D+
Sbjct: 3 AEEVETADLSDKALVSAIREVLASAQSGDTDQYNELVQLMYIKKKKSGDDAMAQPEVPDD 62
Query: 63 ----ALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASN 118
A ET LK LS +V+ +D HH LL I G +W++ P+V+ AL LIISLA ++
Sbjct: 63 VDVVAQRETLLKILSHSVACLDDVHHNHLLQLILGTRIWDHKPNVIYALLDLIISLATTS 122
Query: 119 GKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKH-QVLSRVHAALKSIFDLVPLAPTRL 177
GK++ SCL LVSN +P L+ K +VLSRVHAAL I LVPLAP+ L
Sbjct: 123 GKHLSSCLDTLVSNLR---------SQPRKLDNKMLEVLSRVHAALHKISYLVPLAPSIL 173
Query: 178 LPIVVQRMPTVHNKHERLKMIVVYMENTLKLE-SSAMGELVRSTLLMAVVDRLIDLDMEI 236
LPI+ Q MP+VH+K RL+++V Y++N LKLE SS +G++V +LM V+ R DLD EI
Sbjct: 174 LPILAQSMPSVHDK-ARLQVVVPYVKNLLKLENSSIIGKVVGKDILMMVMGRFRDLDSEI 232
Query: 237 GWDDILHDDFSKGIFXXXXXXXXXXXXXXXXXXXXLPSGSLSRKSLS-GNLIAELLDSLM 295
DD L +D S +F + KS + E+ ++L
Sbjct: 233 ECDDNLQNDSSLAMFDMELDVAVEGTLVSKLLDDLMVESFNHLKSCQDAGRLDEVFENLF 292
Query: 296 VLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSY 355
+FE+L + +F+MFYAC+LDPENCG++FA+ L + F+S +TR +AV+Y
Sbjct: 293 E-SFENLILNTQKLKFSQFLMFYACSLDPENCGVKFASKLLEKFLSSNNNQVTRTNAVTY 351
Query: 356 LASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKAHRVFYSGCQAIMYVLCFR 415
LAS+L+RA FLS F+ S+LKRLVD C +YC D P+ H+VFYSGCQAI+YVLCFR
Sbjct: 352 LASYLARANFLSASFVASMLKRLVDECADYCRTCNDDARPEVHQVFYSGCQAILYVLCFR 411
Query: 416 MRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFN 475
MRSI+++P +SQL PLE+VL H L+PL+VCL SVVSEFL Q+KA LF VS+ F+F+
Sbjct: 412 MRSILEVPHFQSQLT--PLESVLSHKLDPLRVCLSSVVSEFLIQAKACGLFIVSDAFIFD 469
Query: 476 DLLESELSRAFGGLERLDMFFPFDPCLLKKSD 507
DL ESELSRA GG FFPF P LL+KS+
Sbjct: 470 DLSESELSRALGG------FFPF-PWLLEKSN 494
>UNIPROTKB|B4E3T2 [details] [associations]
symbol:RRN3 "cDNA FLJ53965, highly similar to RNA
polymerase I-specific transcription initiation factor RRN3"
species:9606 "Homo sapiens" [GO:0003743 "translation initiation
factor activity" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0006361 "transcription initiation
from RNA polymerase I promoter" evidence=IEA] [GO:0007000
"nucleolus organization" evidence=IEA] [GO:0007028 "cytoplasm
organization" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0048872 "homeostasis of number of
cells" evidence=IEA] [GO:0070063 "RNA polymerase binding"
evidence=IEA] [GO:2000142 "regulation of DNA-dependent
transcription, initiation" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] Pfam:PF05327 GO:GO:0045893 GO:GO:0043066
GO:GO:0005730 GO:GO:0008283 GO:GO:0001701 GO:GO:0042254
GO:GO:0003743 GO:GO:0048872 GO:GO:0006361 GO:GO:0007000
GO:GO:0007028 GO:GO:2000142 UniGene:Hs.460078 HGNC:HGNC:30346
HOVERGEN:HBG056994 InterPro:IPR007991 PANTHER:PTHR12790
EMBL:AC139256 EMBL:AK304856 IPI:IPI01009215 STRING:B4E3T2
Ensembl:ENST00000327307 Uniprot:B4E3T2
Length = 618
Score = 245 (91.3 bits), Expect = 7.9e-27, Sum P(2) = 7.9e-27
Identities = 85/247 (34%), Positives = 118/247 (47%)
Query: 280 KSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVF 339
K L +LI + D L++ T H SC ++F MFY C+ F L
Sbjct: 308 KDLYRDLI-NIFDKLLLPT--HA-SCH-----VQFFMFYLCSFKL-GFAEAFLEHLWKKL 357
Query: 340 VSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA-- 397
P + R +A +Y+ SFL+RA+F+ + S L LV+W Y N D KA
Sbjct: 358 QDPSNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLLVNWLHIYLN--NQDSGTKAFC 415
Query: 398 ----HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQL-LLMPL--ETVLKHDLNPLKVCLP 450
H FYS CQA+ Y FR + ++ LK L L L E ++ LNPLK+CLP
Sbjct: 416 DVALHGPFYSACQAVFYTFVFRHKQLLS-GNLKEGLQYLQSLNFERIVMSQLNPLKICLP 474
Query: 451 SVVSEFLQQSKAARL---FTVSETFVFNDLLESELSRAFGGLER-----LDMFFPFDPCL 502
SVV+ F + +L +T+ E +L S A G + LD FFPFDPC+
Sbjct: 475 SVVNFFAAITNKYQLVFCYTIIERNN-RQMLPVIRSTAGGDSVQICTNPLDTFFPFDPCV 533
Query: 503 LKKSDRF 509
LK+S +F
Sbjct: 534 LKRSKKF 540
Score = 131 (51.2 bits), Expect = 7.9e-27, Sum P(2) = 7.9e-27
Identities = 53/216 (24%), Positives = 97/216 (44%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNR--ALLETSLKALSGAVSYIDISHHES 86
V E L + G+ +++ L + LDPD + ++ L+ S ++ Y+ E
Sbjct: 23 VTEVLLKYKKGETNDFELLKNQL-----LDPDIKDDQIINWLLEFRS-SIMYLT-KDFEQ 75
Query: 87 LLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFL------ 140
L+ I + N V++ + +L ++ ++ CL+M+ S+F PP +
Sbjct: 76 LISIILRLPWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGDVD 135
Query: 141 --DKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMI 198
D E L H AL+ I VP P L+PI+V++ P V K ER +
Sbjct: 136 VSDSDDEDDNLPANFDTC---HRALQIIARYVPSTPWFLMPILVEKFPFVR-KSERT--L 189
Query: 199 VVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDM 234
Y+ N L++ S +R +L ++++L+ LD+
Sbjct: 190 ECYVHNLLRI--SVYFPTLRHEILELIIEKLLKLDV 223
Score = 44 (20.5 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 24/84 (28%), Positives = 37/84 (44%)
Query: 416 MRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFN 475
+R + P L+ ++L + +E +LK D+N + + E Q+ T S +FN
Sbjct: 197 LRISVYFPTLRHEILELIIEKLLKLDVNASRQGIEDA-EETATQTCGG---TDSTEGLFN 252
Query: 476 -DLLESELSRAFGGLERLD-MFFP 497
D E G ERLD M P
Sbjct: 253 MDEDEETEHETKAGPERLDQMVHP 276
Score = 37 (18.1 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 287 IAELLDSLMVLTFEHLES-CEGTGRL 311
+AE LD LM L +++ C G++
Sbjct: 277 VAERLDILMSLVLSYMKDVCYVDGKV 302
>UNIPROTKB|Q9NYV6 [details] [associations]
symbol:RRN3 "RNA polymerase I-specific transcription
initiation factor RRN3" species:9606 "Homo sapiens" [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0007000 "nucleolus
organization" evidence=IEA] [GO:0007028 "cytoplasm organization"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0043066
"negative regulation of apoptotic process" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0048872 "homeostasis of number of cells"
evidence=IEA] [GO:0070063 "RNA polymerase binding" evidence=IEA]
[GO:2000142 "regulation of DNA-dependent transcription, initiation"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006360
"transcription from RNA polymerase I promoter" evidence=TAS]
[GO:0006361 "transcription initiation from RNA polymerase I
promoter" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Pfam:PF05327 GO:GO:0045893 GO:GO:0043066 GO:GO:0005654
GO:GO:0005730 GO:GO:0008283 GO:GO:0001701 GO:GO:0042254
GO:GO:0048872 Reactome:REACT_1788 GO:GO:0006361 GO:GO:0007000
GO:GO:0007028 GO:GO:2000142 EMBL:AJ272050 EMBL:AF227156
EMBL:AK314769 EMBL:CH471301 EMBL:BC071868 EMBL:BC132688
EMBL:BC132690 IPI:IPI00152960 RefSeq:NP_060897.3 UniGene:Hs.460078
ProteinModelPortal:Q9NYV6 IntAct:Q9NYV6 MINT:MINT-249163
STRING:Q9NYV6 PhosphoSite:Q9NYV6 DMDM:74719591 PRIDE:Q9NYV6
DNASU:54700 Ensembl:ENST00000198767 GeneID:54700 KEGG:hsa:54700
UCSC:uc002dde.3 CTD:54700 GeneCards:GC16M015153 H-InvDB:HIX0012886
H-InvDB:HIX0038660 H-InvDB:HIX0038739 HGNC:HGNC:30346 HPA:HPA049837
MIM:605121 neXtProt:NX_Q9NYV6 PharmGKB:PA134878601 eggNOG:NOG275643
HOGENOM:HOG000236344 HOVERGEN:HBG056994 InParanoid:Q9NYV6 KO:K15216
OMA:STPWFLM OrthoDB:EOG4XD3QT PhylomeDB:Q9NYV6 GenomeRNAi:54700
NextBio:57257 ArrayExpress:Q9NYV6 Bgee:Q9NYV6 CleanEx:HS_RRN3
Genevestigator:Q9NYV6 GermOnline:ENSG00000085721 InterPro:IPR007991
PANTHER:PTHR12790 Uniprot:Q9NYV6
Length = 651
Score = 245 (91.3 bits), Expect = 9.8e-27, Sum P(2) = 9.8e-27
Identities = 85/247 (34%), Positives = 118/247 (47%)
Query: 280 KSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVF 339
K L +LI + D L++ T H SC ++F MFY C+ F L
Sbjct: 341 KDLYRDLI-NIFDKLLLPT--HA-SCH-----VQFFMFYLCSFKL-GFAEAFLEHLWKKL 390
Query: 340 VSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA-- 397
P + R +A +Y+ SFL+RA+F+ + S L LV+W Y N D KA
Sbjct: 391 QDPSNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLLVNWLHIYLN--NQDSGTKAFC 448
Query: 398 ----HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQL-LLMPL--ETVLKHDLNPLKVCLP 450
H FYS CQA+ Y FR + ++ LK L L L E ++ LNPLK+CLP
Sbjct: 449 DVALHGPFYSACQAVFYTFVFRHKQLLS-GNLKEGLQYLQSLNFERIVMSQLNPLKICLP 507
Query: 451 SVVSEFLQQSKAARL---FTVSETFVFNDLLESELSRAFGGLER-----LDMFFPFDPCL 502
SVV+ F + +L +T+ E +L S A G + LD FFPFDPC+
Sbjct: 508 SVVNFFAAITNKYQLVFCYTIIERNN-RQMLPVIRSTAGGDSVQICTNPLDTFFPFDPCV 566
Query: 503 LKKSDRF 509
LK+S +F
Sbjct: 567 LKRSKKF 573
Score = 131 (51.2 bits), Expect = 9.8e-27, Sum P(2) = 9.8e-27
Identities = 53/216 (24%), Positives = 97/216 (44%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNR--ALLETSLKALSGAVSYIDISHHES 86
V E L + G+ +++ L + LDPD + ++ L+ S ++ Y+ E
Sbjct: 56 VTEVLLKYKKGETNDFELLKNQL-----LDPDIKDDQIINWLLEFRS-SIMYLT-KDFEQ 108
Query: 87 LLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFL------ 140
L+ I + N V++ + +L ++ ++ CL+M+ S+F PP +
Sbjct: 109 LISIILRLPWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGDVD 168
Query: 141 --DKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMI 198
D E L H AL+ I VP P L+PI+V++ P V K ER +
Sbjct: 169 VSDSDDEDDNLPANFDTC---HRALQIIARYVPSTPWFLMPILVEKFPFVR-KSERT--L 222
Query: 199 VVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDM 234
Y+ N L++ S +R +L ++++L+ LD+
Sbjct: 223 ECYVHNLLRI--SVYFPTLRHEILELIIEKLLKLDV 256
Score = 44 (20.5 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
Identities = 24/84 (28%), Positives = 37/84 (44%)
Query: 416 MRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFN 475
+R + P L+ ++L + +E +LK D+N + + E Q+ T S +FN
Sbjct: 230 LRISVYFPTLRHEILELIIEKLLKLDVNASRQGIEDA-EETATQTCGG---TDSTEGLFN 285
Query: 476 -DLLESELSRAFGGLERLD-MFFP 497
D E G ERLD M P
Sbjct: 286 MDEDEETEHETKAGPERLDQMVHP 309
Score = 37 (18.1 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 287 IAELLDSLMVLTFEHLES-CEGTGRL 311
+AE LD LM L +++ C G++
Sbjct: 310 VAERLDILMSLVLSYMKDVCYVDGKV 335
>MGI|MGI:1925255 [details] [associations]
symbol:Rrn3 "RRN3 RNA polymerase I transcription factor
homolog (yeast)" species:10090 "Mus musculus" [GO:0001701 "in utero
embryonic development" evidence=IMP] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006361 "transcription initiation
from RNA polymerase I promoter" evidence=IMP] [GO:0007000
"nucleolus organization" evidence=IMP] [GO:0007028 "cytoplasm
organization" evidence=IMP] [GO:0008283 "cell proliferation"
evidence=IMP] [GO:0042254 "ribosome biogenesis" evidence=IMP]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IMP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0048872 "homeostasis of number of
cells" evidence=IMP] [GO:0070063 "RNA polymerase binding"
evidence=IDA] [GO:2000142 "regulation of DNA-dependent
transcription, initiation" evidence=IDA] MGI:MGI:1925255
Pfam:PF05327 GO:GO:0045893 GO:GO:0043066 GO:GO:0005730
GO:GO:0008283 GO:GO:0001701 GO:GO:0042254 GO:GO:0048872
GO:GO:0006361 GO:GO:0007000 GO:GO:0007028 GO:GO:2000142
GO:GO:0070063 CTD:54700 eggNOG:NOG275643 HOGENOM:HOG000236344
KO:K15216 OMA:STPWFLM OrthoDB:EOG4XD3QT InterPro:IPR007991
PANTHER:PTHR12790 EMBL:BC055781 EMBL:BC034110 EMBL:BC138774
EMBL:BC138776 IPI:IPI00127454 RefSeq:NP_001034610.1
UniGene:Mm.490362 ProteinModelPortal:B2RS91 SMR:B2RS91
STRING:B2RS91 PhosphoSite:B2RS91 PaxDb:B2RS91 PRIDE:B2RS91
Ensembl:ENSMUST00000023363 GeneID:106298 KEGG:mmu:106298
UCSC:uc007ygj.1 GeneTree:ENSGT00390000001488 InParanoid:B2RS91
NextBio:358127 Bgee:B2RS91 Genevestigator:B2RS91 Uniprot:B2RS91
Length = 656
Score = 236 (88.1 bits), Expect = 1.6e-26, Sum P(2) = 1.6e-26
Identities = 81/247 (32%), Positives = 119/247 (48%)
Query: 280 KSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVF 339
K L +LI+ + D L++ T H SC ++F MF+ C+ F L
Sbjct: 339 KDLYRDLIS-IFDKLLLPT--HA-SCH-----VQFFMFFLCSFKL-GFAEAFLEHLWKKL 388
Query: 340 VSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA-- 397
P + R +A +Y+ SFL+RA+F+ + + L LV+W Y + D KA
Sbjct: 389 QDPNNPAIIRQAAANYIGSFLARAKFIPLITVKTCLDLLVNWLHMY--LTNQDSGTKAFC 446
Query: 398 ----HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQL-LLMPL--ETVLKHDLNPLKVCLP 450
H FYS CQA+ Y + FR + ++ LK L L L E ++ LNPLK+CLP
Sbjct: 447 DVALHGPFYSACQAVFYTVVFRHKQLLS-GNLKQGLQYLQSLNFERIVLSQLNPLKICLP 505
Query: 451 SVVSEFLQQSKAARL---FTVSETFVFNDLLESELSRAFGGLER-----LDMFFPFDPCL 502
VV+ F + +L +T+ E +L S A G + LD FFPFDPC+
Sbjct: 506 QVVNFFAAITNKYQLVFCYTIMERNS-RQMLPVIRSTAGGDSVQTCTNPLDTFFPFDPCV 564
Query: 503 LKKSDRF 509
LK+S +F
Sbjct: 565 LKRSKKF 571
Score = 139 (54.0 bits), Expect = 1.6e-26, Sum P(2) = 1.6e-26
Identities = 56/220 (25%), Positives = 99/220 (45%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNR--ALLETSLKALSGAVSYIDISHHES 86
V E L + G+ ++ L LS DPD + ++ L+ S +V Y+ E
Sbjct: 54 VTEVLLKYKKGETNDLELLKN--QLS---DPDIKDDQIINWLLEFRS-SVMYLT-KDFEQ 106
Query: 87 LLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYF-----LD 141
L+ I + N V++ + +L ++ ++ CL+M+ S+F PP +D
Sbjct: 107 LINIILRLPWLNRSQRVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIVKEGGID 166
Query: 142 KLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVY 201
+ + H AL+ I VP P L+PI+V++ P V K ER + Y
Sbjct: 167 VSDSDDEDDNLPAIFDTCHRALQIITRYVPSTPWFLMPILVEKFPFVR-KSERT--LECY 223
Query: 202 MENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDI 241
+ N L++ S +R +L V+++L+ LD+ + DI
Sbjct: 224 VHNLLRI--SLYFPTLRREILELVIEKLLKLDVSVSRQDI 261
>RGD|1305001 [details] [associations]
symbol:Rrn3 "RRN3 RNA polymerase I transcription factor homolog
(S. cerevisiae)" species:10116 "Rattus norvegicus" [GO:0001701 "in
utero embryonic development" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=ISO] [GO:0006361 "transcription initiation from RNA
polymerase I promoter" evidence=ISO] [GO:0007000 "nucleolus
organization" evidence=ISO] [GO:0007028 "cytoplasm organization"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0042254 "ribosome biogenesis" evidence=ISO] [GO:0043066
"negative regulation of apoptotic process" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0048872 "homeostasis of number of cells"
evidence=ISO] [GO:0070063 "RNA polymerase binding" evidence=ISO]
[GO:2000142 "regulation of DNA-dependent transcription, initiation"
evidence=ISO] RGD:1305001 Pfam:PF05327 GO:GO:0045893 GO:GO:0043066
GO:GO:0008283 GO:GO:0001701 GO:GO:0042254 GO:GO:0048872
GO:GO:0006361 GO:GO:0007000 GO:GO:0007028 GO:GO:2000142 CTD:54700
eggNOG:NOG275643 HOGENOM:HOG000236344 HOVERGEN:HBG056994 KO:K15216
OrthoDB:EOG4XD3QT InterPro:IPR007991 PANTHER:PTHR12790
GeneTree:ENSGT00390000001488 EMBL:BC166485 IPI:IPI00765160
RefSeq:NP_001129318.1 UniGene:Rn.159763 STRING:B2GV13
Ensembl:ENSRNOT00000004459 GeneID:304714 KEGG:rno:304714
UCSC:RGD:1305001 NextBio:653501 Genevestigator:B2GV13
Uniprot:B2GV13
Length = 661
Score = 241 (89.9 bits), Expect = 6.3e-26, Sum P(2) = 6.3e-26
Identities = 84/251 (33%), Positives = 121/251 (48%)
Query: 280 KSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVF 339
K L +LI+ + D L++ T H SC ++F MF+ C+ FA +
Sbjct: 339 KDLYRDLIS-IFDKLVLPT--HA-SCH-----VQFFMFFLCSFKLSLLLQGFAEAFLEHL 389
Query: 340 VSGLYPP----LTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINP 395
L P + R +A +Y+ SFL+RA+F+ + S L LV+W Y N D
Sbjct: 390 WKKLQDPNNPVIIRQAAANYIGSFLARAKFIPLITVKSCLDLLVNWLHLYLN--SQDSGT 447
Query: 396 KA------HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQL-LLMPL--ETVLKHDLNPLK 446
KA H FYS CQA+ Y + FR + ++ LK L L L E ++ LNPLK
Sbjct: 448 KAFCDVALHGPFYSACQAVFYTVVFRHKQLLS-GNLKEGLRYLQSLNFERIVLSQLNPLK 506
Query: 447 VCLPSVVSEFLQQSKAARL---FTVSETFVFNDLLESELSRAFGGLER-----LDMFFPF 498
+CLP VV+ F + +L +T+ E +L S A G + LD FFPF
Sbjct: 507 ICLPRVVNFFAAITNKYQLVFCYTIMERNN-RQMLPVIRSTAGGDSVQTCTNPLDTFFPF 565
Query: 499 DPCLLKKSDRF 509
DPC+LK+S +F
Sbjct: 566 DPCMLKRSKKF 576
Score = 128 (50.1 bits), Expect = 6.3e-26, Sum P(2) = 6.3e-26
Identities = 49/195 (25%), Positives = 90/195 (46%)
Query: 58 DPDNR--ALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLA 115
DPD + ++ L+ S +V Y+ E L+ I + N V++ + +L
Sbjct: 78 DPDIKDDQIINWLLEFRS-SVMYLT-KDFEQLINIILRLPWLNRSQTVVEEYLAFLGNLV 135
Query: 116 ASNGKYVDSCLTMLVSNFTPPSYFLDK----LKEPHGLERKHQV-LSRVHAALKSIFDLV 170
++ ++ CL+M+ S+F PP + + + E + H AL+ I V
Sbjct: 136 SAQTVFLRPCLSMIASHFVPPRVIVKEGGIDVSESEDEDDNLPANFDTCHKALQIITRYV 195
Query: 171 PLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLI 230
P P L+PI+V++ P V K ER + Y+ N L++ S +R +L ++++ +
Sbjct: 196 PSTPWFLMPILVEKFPFVR-KSERT--LECYVHNLLRI--SLYFPTLRREILELIIEKSL 250
Query: 231 DLDMEIGWDDILHDD 245
LD+ + DI DD
Sbjct: 251 KLDVSVSRQDI--DD 263
>UNIPROTKB|F5H148 [details] [associations]
symbol:RRN3 "RNA polymerase I-specific transcription
initiation factor RRN3" species:9606 "Homo sapiens" [GO:0005730
"nucleolus" evidence=IDA] Pfam:PF05327 GO:GO:0005730
HGNC:HGNC:30346 InterPro:IPR007991 PANTHER:PTHR12790 EMBL:AC139256
IPI:IPI01010341 ProteinModelPortal:F5H148 SMR:F5H148
Ensembl:ENST00000429751 UCSC:uc010uzq.2 ArrayExpress:F5H148
Bgee:F5H148 Uniprot:F5H148
Length = 621
Score = 245 (91.3 bits), Expect = 9.0e-26, Sum P(2) = 9.0e-26
Identities = 85/247 (34%), Positives = 118/247 (47%)
Query: 280 KSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVF 339
K L +LI + D L++ T H SC ++F MFY C+ F L
Sbjct: 311 KDLYRDLI-NIFDKLLLPT--HA-SCH-----VQFFMFYLCSFKL-GFAEAFLEHLWKKL 360
Query: 340 VSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA-- 397
P + R +A +Y+ SFL+RA+F+ + S L LV+W Y N D KA
Sbjct: 361 QDPSNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLLVNWLHIYLN--NQDSGTKAFC 418
Query: 398 ----HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQL-LLMPL--ETVLKHDLNPLKVCLP 450
H FYS CQA+ Y FR + ++ LK L L L E ++ LNPLK+CLP
Sbjct: 419 DVALHGPFYSACQAVFYTFVFRHKQLLS-GNLKEGLQYLQSLNFERIVMSQLNPLKICLP 477
Query: 451 SVVSEFLQQSKAARL---FTVSETFVFNDLLESELSRAFGGLER-----LDMFFPFDPCL 502
SVV+ F + +L +T+ E +L S A G + LD FFPFDPC+
Sbjct: 478 SVVNFFAAITNKYQLVFCYTIIERNN-RQMLPVIRSTAGGDSVQICTNPLDTFFPFDPCV 536
Query: 503 LKKSDRF 509
LK+S +F
Sbjct: 537 LKRSKKF 543
Score = 121 (47.7 bits), Expect = 9.0e-26, Sum P(2) = 9.0e-26
Identities = 44/177 (24%), Positives = 79/177 (44%)
Query: 66 ETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSC 125
E LK G + ++ ++ L I + N V++ + +L ++ ++ C
Sbjct: 58 EVLLKYKKGETNDFELLKNQLLDPDIKRLPWLNRSQTVVEEYLAFLGNLVSAQTVFLRPC 117
Query: 126 LTMLVSNFTPPSYFL--------DKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRL 177
L+M+ S+F PP + D E L H AL+ I VP P L
Sbjct: 118 LSMIASHFVPPRVIIKEGDVDVSDSDDEDDNLPANFDTC---HRALQIIARYVPSTPWFL 174
Query: 178 LPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDM 234
+PI+V++ P V K ER + Y+ N L++ S +R +L ++++L+ LD+
Sbjct: 175 MPILVEKFPFVR-KSERT--LECYVHNLLRI--SVYFPTLRHEILELIIEKLLKLDV 226
>UNIPROTKB|E1B883 [details] [associations]
symbol:RRN3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000142 "regulation of DNA-dependent transcription,
initiation" evidence=IEA] [GO:0070063 "RNA polymerase binding"
evidence=IEA] [GO:0048872 "homeostasis of number of cells"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IEA]
[GO:0007028 "cytoplasm organization" evidence=IEA] [GO:0007000
"nucleolus organization" evidence=IEA] [GO:0006361 "transcription
initiation from RNA polymerase I promoter" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0001701 "in utero
embryonic development" evidence=IEA] Pfam:PF05327 GO:GO:0045893
GO:GO:0043066 GO:GO:0008283 GO:GO:0001701 GO:GO:0042254
GO:GO:0048872 GO:GO:0006361 GO:GO:0007000 GO:GO:0007028
GO:GO:2000142 OMA:STPWFLM InterPro:IPR007991 PANTHER:PTHR12790
GeneTree:ENSGT00390000001488 EMBL:DAAA02057544 IPI:IPI00718637
Ensembl:ENSBTAT00000006308 Uniprot:E1B883
Length = 673
Score = 248 (92.4 bits), Expect = 1.9e-25, Sum P(2) = 1.9e-25
Identities = 86/252 (34%), Positives = 120/252 (47%)
Query: 280 KSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVF 339
K L +LI + D L++ T H SC ++F MFY C+ L FA +
Sbjct: 363 KDLYRDLIT-IFDKLLLPT--HA-SCH-----VQFFMFYLCSFK-----LGFAEAFLEHL 408
Query: 340 VSGLYPP----LTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINP 395
L P + R +A +Y+ SFL+RA+F+ + S L LV+W Y N D
Sbjct: 409 WKKLQDPNNPAIIRQAAANYIGSFLARAKFIPLITVKSCLDLLVNWLHVYLN--NQDSGT 466
Query: 396 KA------HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQL-LLMPL--ETVLKHDLNPLK 446
KA H FYS CQA+ Y FR + ++ LK L L L E ++ LNPLK
Sbjct: 467 KAFCDVALHGPFYSACQAVFYTFVFRHKQLLS-GNLKEGLRYLQSLNFERIVMSQLNPLK 525
Query: 447 VCLPSVVSEFLQQSKAARL---FTVSETFVFNDLLESELSRAFGG------LERLDMFFP 497
+CLPSVV+ F + +L +T+ E N + + GG LD FFP
Sbjct: 526 ICLPSVVNFFAAITNKYQLVFCYTLIERN--NRQMLPVIRNTAGGDSVQTCTNPLDTFFP 583
Query: 498 FDPCLLKKSDRF 509
FDPC+LK+S +F
Sbjct: 584 FDPCVLKRSKKF 595
Score = 116 (45.9 bits), Expect = 1.9e-25, Sum P(2) = 1.9e-25
Identities = 49/207 (23%), Positives = 89/207 (42%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRALLETSLKALSGAVSYIDISHHESLL 88
V E L + G+ +++ L LS D++ + L ++ Y+ E L+
Sbjct: 56 VTEVLLKYKKGETNDFELLKN--QLSDPEIKDDQII--NWLLEFRSSIMYLT-KDFEQLI 110
Query: 89 VSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFL-----DKL 143
+ + N V++ + +L ++ ++ CL+M+ S+F PP + D
Sbjct: 111 NILLRLKWLNRSQTVVEEYLSFLGNLVSAQTVFLRPCLSMIASHFVPPRVVIKEGDVDVS 170
Query: 144 KEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYME 203
E H AL+ I VP P L+PI+V++ P V K ER + Y+
Sbjct: 171 DSDDEDENLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVR-KSERT--LECYIH 227
Query: 204 NTLKLESSAMGELVRSTLLMAVVDRLI 230
N L++ S +R +L VV++L+
Sbjct: 228 NLLRI--SVYFPTLRHEILELVVEKLL 252
>UNIPROTKB|F1NIF7 [details] [associations]
symbol:RRN3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006361 "transcription
initiation from RNA polymerase I promoter" evidence=IEA]
[GO:0007000 "nucleolus organization" evidence=IEA] [GO:0007028
"cytoplasm organization" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0048872
"homeostasis of number of cells" evidence=IEA] [GO:0070063 "RNA
polymerase binding" evidence=IEA] [GO:2000142 "regulation of
DNA-dependent transcription, initiation" evidence=IEA] Pfam:PF05327
GO:GO:0045893 GO:GO:0043066 GO:GO:0008283 GO:GO:0042254
GO:GO:0048872 GO:GO:0006361 GO:GO:0007000 GO:GO:0007028
GO:GO:2000142 OMA:STPWFLM InterPro:IPR007991 PANTHER:PTHR12790
GeneTree:ENSGT00390000001488 EMBL:AADN02023930 EMBL:AADN02023931
IPI:IPI01017278 Ensembl:ENSGALT00000034401 Uniprot:F1NIF7
Length = 622
Score = 228 (85.3 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
Identities = 74/242 (30%), Positives = 119/242 (49%)
Query: 280 KSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVF 339
K L +L++ + D L++ T H SC +++ +F+ C+L F L
Sbjct: 309 KDLYRDLVS-VFDKLILPT--HA-SCH-----VQYFIFHICSLK-SGLAEAFLDHLWKKL 358
Query: 340 VSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA-- 397
P + R +A SY+ SFL+RA+F+ + + L LV+W +Y + N
Sbjct: 359 QDPNNPSVIRQTAGSYIGSFLARAKFIPVVTVKACLDLLVNWMHKYIDNQDTGANAYCDV 418
Query: 398 --HRVFYSGCQAIMYVLCFRMRSIMD--IPRLKSQLLLMPLETVLKHDLNPLKVCLPSVV 453
H FYS CQA Y L FR + ++D + + S L + E ++ LNPLK+C+PSVV
Sbjct: 419 ALHGPFYSACQAAFYTLIFRHKQLLDGNLRKGLSYLQSLNFERIVMCQLNPLKICIPSVV 478
Query: 454 SEFLQQSKAARL---FTVSE--TFVFNDLLESELSRAFGGL--ERLDMFFPFDPCLLKKS 506
+ F ++ +L +T+ E F ++ S F + LD FFPFDP +LK+S
Sbjct: 479 NLFAAITRKYQLVFCYTIIERNNRQFIPVVRSGTGGDFVQMCTNPLDSFFPFDPYVLKRS 538
Query: 507 DR 508
+
Sbjct: 539 KK 540
Score = 126 (49.4 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
Identities = 62/263 (23%), Positives = 108/263 (41%)
Query: 58 DPDNR-ALLETSLKALSGAVSYIDISHHESLLVSIFGMSMW-NYDPDVMDALKGLIISLA 115
DPD + A + L +V+Y+ + LVSI W +V++ G + +L
Sbjct: 50 DPDIKDAQIINWLHEFRSSVAYLTKDFEQ--LVSILLKLPWLRRSREVVEEYLGFLGNLV 107
Query: 116 ASNGKYVDSCLTMLVSNFTPPSYFL-----DKLKEPHGLERKHQVLSRVHAALKSIFDLV 170
++ ++ CL+M+VS F PP + D E + H AL+++ V
Sbjct: 108 SAQTVHLRPCLSMIVSQFVPPRIIIREDDVDISDSDDDEENLSENFDTCHRALQTVAKYV 167
Query: 171 PLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLI 230
P L+PI+V++ P + NK ER + Y+ N LE S +++ LL +++ L
Sbjct: 168 PSTLQFLMPILVEKFPFI-NKSERT--LDAYLWN---LELSVYYISLQTVLLDLILEILS 221
Query: 231 DLDMEIGWDDILHDDFSKGIFXXXXXXXXXXXXXXXXXXXXLPSGSLSRKS-LSGNLIAE 289
++ + DI D +S S + +AE
Sbjct: 222 NMXVSTPQQDI-EDAEEAANNSDSEEKSTEEGLFDMEEDEERKENKVSPSSERMAHPLAE 280
Query: 290 LLDSLMVLTFEHLES-CEGTGRL 311
LD LM + F +++ C G+L
Sbjct: 281 RLDILMTILFAYIKDVCHVDGKL 303
Score = 51 (23.0 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 13 HEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVM 51
H++ D +I D +++ + E +SV D + QLV+++
Sbjct: 46 HQLSDPDIKDAQIINWLHEFRSSVAYLTKD-FEQLVSIL 83
>ZFIN|ZDB-GENE-080225-1 [details] [associations]
symbol:rrn3 "RRN3 RNA polymerase I transcription
factor homolog (S. cerevisiae)" species:7955 "Danio rerio"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] Pfam:PF05327 ZFIN:ZDB-GENE-080225-1 CTD:54700
KO:K15216 InterPro:IPR007991 PANTHER:PTHR12790
GeneTree:ENSGT00390000001488 EMBL:CR388147 IPI:IPI00618202
RefSeq:XP_706962.2 UniGene:Dr.114417 Ensembl:ENSDART00000114265
GeneID:558718 KEGG:dre:558718 Bgee:F1QK07 Uniprot:F1QK07
Length = 612
Score = 224 (83.9 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 79/248 (31%), Positives = 119/248 (47%)
Query: 280 KSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLR--FATMLAD 337
K+L +L++ + D +++ T H SC ++F MFY C+ GL F L
Sbjct: 305 KALYRDLVS-VFDKVVLPT--HA-SCH-----VQFYMFYLCSF---RLGLAEAFLDHLWK 352
Query: 338 VFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGG------ 391
+ P + R SA Y+ SF++RA+FL + + L LV W Y +
Sbjct: 353 LLQGPNQPSVLRQSAAGYMGSFMARAKFLPVSTVKACLDLLVPWLHLYIDSQDSGSKAFC 412
Query: 392 DINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLL--MPLETVLKHDLNPLKVCL 449
DIN H FY+ CQA+ Y L F+ +I++ K L + LE ++ LNPL+VCL
Sbjct: 413 DIN--LHGPFYTACQAVFYTLIFKHNAILEGNMKKGLAYLQGLNLERIVMCQLNPLRVCL 470
Query: 450 PSVVSEFLQQSKAARL---FTVSETFVFNDLLESELSRAFGG------LERLDMFFPFDP 500
P+V + F ++ +L +T+ E N L + + GG LD FFPFDP
Sbjct: 471 PAVTNMFAAITRKYQLVFCYTIIERN--NRHLLPVVRSSVGGSSVATNTNPLDSFFPFDP 528
Query: 501 CLLKKSDR 508
LLK S +
Sbjct: 529 YLLKSSGK 536
Score = 123 (48.4 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 58/281 (20%), Positives = 116/281 (41%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNR-ALLETSLKALSGAVSYIDISHHESL 87
V L +Q GD +Y +L+ LS DPD + A + L+ V+ + HE L
Sbjct: 23 VANTLAKLQKGDTSDY-ELIK-HQLS---DPDIKDAQIINWLQEFRTCVTQLG-KDHEQL 76
Query: 88 LVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDK----L 143
+ + + V++ + +L ++ Y+ +CL M+V+NF+P + + +
Sbjct: 77 VYVVLKLPWLGRSQAVVEEYLAFLSNLVSAQTVYLRACLRMVVTNFSPKRIRIQEGNVDI 136
Query: 144 KEPHGL-ERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYM 202
+ E + H AL+ I VP L+PI+ + P V L+ Y+
Sbjct: 137 SDSDDEDENLPRTFDNCHQALQLIARYVPSTSRFLMPILTDKFPFVQKSSRTLEC---YV 193
Query: 203 ENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFXXXXXXXXXXX 262
N L++ + + +L R +L ++ +++ LD+ +I ++ G
Sbjct: 194 HNLLRV-TVYIPDL-RKDVLELIISKMLMLDVSAPRSEI--EEVESGAQQGASGASQDDC 249
Query: 263 XXXXXXXXXLPSGSLSRKSLSGNLIAELLDSLMVLTFEHLE 303
P S + + +AE LD++M + +++
Sbjct: 250 LFNMDEEEDSPLSSGADGGAMVHPVAERLDTMMTVLLAYIK 290
Score = 56 (24.8 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 13 HEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLS--GRLDPDNRALLETSLK 70
H++ D +I D +++ ++E T V D+ + V+ L GR ++A++E L
Sbjct: 43 HQLSDPDIKDAQIINWLQEFRTCVTQLGKDHEQLVYVVLKLPWLGR----SQAVVEEYLA 98
Query: 71 ALSGAVS 77
LS VS
Sbjct: 99 FLSNLVS 105
>POMBASE|SPAC18G6.11c [details] [associations]
symbol:rrn3 "ribosomal DNA (rDNA) transcription factor
Rrn3" species:4896 "Schizosaccharomyces pombe" [GO:0000120 "RNA
polymerase I transcription factor complex" evidence=IC] [GO:0001169
"RNA polymerase I CORE element sequence-specific DNA binding
transcription factor activity" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=IMP] PomBase:SPAC18G6.11c Pfam:PF05327 GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000120
eggNOG:NOG275643 KO:K15216 InterPro:IPR007991 PANTHER:PTHR12790
PIR:T37924 RefSeq:NP_593674.1 STRING:Q10110
EnsemblFungi:SPAC18G6.11c.1 GeneID:2542511 KEGG:spo:SPAC18G6.11c
OMA:CELAIRH OrthoDB:EOG44XNR6 NextBio:20803564 GO:GO:0001169
Uniprot:Q10110
Length = 599
Score = 217 (81.4 bits), Expect = 3.3e-22, Sum P(2) = 3.3e-22
Identities = 68/212 (32%), Positives = 112/212 (52%)
Query: 310 RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPC 369
R +F++F+A LDPE + F +L +V + P R+S Y+ S+++RA+ L
Sbjct: 358 RYTQFLIFWASQLDPEFTDI-FLGVLTEVCLDPSQPYTLRLSGAMYIGSYVARAKALEKN 416
Query: 370 ---FIVSLLKRLVDWCLEYC-NILGGDINPKAHRVFYSGCQAIMYVLCFRMRSI------ 419
IV+++ R V+ L+ C N L D+ K H VFY+ Q+I Y+ CFR R +
Sbjct: 417 TIQIIVNMMTRWVEAYLDQCENELSDDLLSK-HSVFYAINQSIFYIFCFRWRELCVSDES 475
Query: 420 --MDIPRLKSQLLLMPL--ETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFN 475
M+ PR + + + +VL LNPL+ C P++V +F +K A ++ +V++
Sbjct: 476 ESME-PRPNEWIPGLEILHRSVLSR-LNPLRYCSPNIVLQF---AKVAN--HLNFMYVYS 528
Query: 476 DLLESELSRAFG-GLERLDMFFPFDPCLLKKS 506
++E F G + +D +FPFDP L KS
Sbjct: 529 -IIEQNRKGIFREGFDTMDAYFPFDPYRLTKS 559
Score = 117 (46.2 bits), Expect = 3.3e-22, Sum P(2) = 3.3e-22
Identities = 71/314 (22%), Positives = 126/314 (40%)
Query: 10 AESHEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHL-SGRLDPDNRALLETS 68
A S D + L V +AL G+ Y L S D + L+
Sbjct: 39 ASSVSKNDGRLMQQMLRAFVNKALDDKAEGNFAGYEDLRRQFAAKSDTKDAPSSLQLQNL 98
Query: 69 LKALSGAVSYIDISHHESLLVSIFGMSMW-NYDPDVMDALKGLIISLAASNGKYVDSCLT 127
L AL+ VS +D S + SL++S+ S+W + D + + +L ++ Y+ +T
Sbjct: 99 LSALTCNVSRLD-SSNSSLVMSVLD-SVWVSRDESFVRCYTRFLGNLISAQSNYLPLVMT 156
Query: 128 MLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPT 187
ML+ + Y D L + +H H ALK + +LVP A + L +++ P
Sbjct: 157 MLIQHML---YRPDSL----AIHYEH-----AHMALKYVLELVPRAHSFLYSSILEEFPY 204
Query: 188 VHNKHERLKMIVVYMENTLKL-E--SSAMGELVRSTLLMAVVDRLIDLDMEIGWDD---- 240
K E L + Y+ N L + E S G ++ + ++ ++ +++ +E+ DD
Sbjct: 205 ---KDESLLAQMTYISNVLSICEYVPSIKGPVLHA-IIDKIIQIDVEIQVEVDDDDEEED 260
Query: 241 --ILHDDFSKGIFXXXXXXXXXXXXXXXXXXXXLPSGSLSRKSLSGNL-IAELLDSLMVL 297
+ DD + S L+ SL+ + + LD L+
Sbjct: 261 EVVTDDDGTSNADSEVITASTLYERHTAISSEMTSSTILTPPSLTDTRQLMQQLDQLLYT 320
Query: 298 TFEHLES-CEGTGR 310
F +L+S + T R
Sbjct: 321 LFSYLDSNLKSTSR 334
>UNIPROTKB|B4E0J7 [details] [associations]
symbol:RRN3 "cDNA FLJ52380, highly similar to RNA
polymerase I-specific transcriptioninitiation factor RRN3"
species:9606 "Homo sapiens" [GO:0003743 "translation initiation
factor activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] Pfam:PF05327 GO:GO:0005730 GO:GO:0003743
UniGene:Hs.460078 HGNC:HGNC:30346 HOGENOM:HOG000236344
HOVERGEN:HBG056994 InterPro:IPR007991 PANTHER:PTHR12790
EMBL:AC139256 EMBL:AK303405 IPI:IPI00889193 STRING:B4E0J7
Ensembl:ENST00000540462 Uniprot:B4E0J7
Length = 469
Score = 245 (91.3 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 85/247 (34%), Positives = 118/247 (47%)
Query: 280 KSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVF 339
K L +LI + D L++ T H SC ++F MFY C+ F L
Sbjct: 159 KDLYRDLI-NIFDKLLLPT--HA-SCH-----VQFFMFYLCSFKL-GFAEAFLEHLWKKL 208
Query: 340 VSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA-- 397
P + R +A +Y+ SFL+RA+F+ + S L LV+W Y N D KA
Sbjct: 209 QDPSNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLLVNWLHIYLN--NQDSGTKAFC 266
Query: 398 ----HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQL-LLMPL--ETVLKHDLNPLKVCLP 450
H FYS CQA+ Y FR + ++ LK L L L E ++ LNPLK+CLP
Sbjct: 267 DVALHGPFYSACQAVFYTFVFRHKQLLS-GNLKEGLQYLQSLNFERIVMSQLNPLKICLP 325
Query: 451 SVVSEFLQQSKAARL---FTVSETFVFNDLLESELSRAFGGLER-----LDMFFPFDPCL 502
SVV+ F + +L +T+ E +L S A G + LD FFPFDPC+
Sbjct: 326 SVVNFFAAITNKYQLVFCYTIIERNN-RQMLPVIRSTAGGDSVQICTNPLDTFFPFDPCV 384
Query: 503 LKKSDRF 509
LK+S +F
Sbjct: 385 LKRSKKF 391
Score = 64 (27.6 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 160 HAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHER 194
H AL+ I VP P L+PI+V++ P V K ER
Sbjct: 38 HRALQIIARYVPSTPWFLMPILVEKFPFVR-KSER 71
>UNIPROTKB|I3LD85 [details] [associations]
symbol:RRN3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000142 "regulation of DNA-dependent transcription,
initiation" evidence=IEA] [GO:0070063 "RNA polymerase binding"
evidence=IEA] [GO:0048872 "homeostasis of number of cells"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IEA]
[GO:0007028 "cytoplasm organization" evidence=IEA] [GO:0007000
"nucleolus organization" evidence=IEA] [GO:0006361 "transcription
initiation from RNA polymerase I promoter" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0001701 "in utero
embryonic development" evidence=IEA] Pfam:PF05327 GO:GO:0045893
GO:GO:0043066 GO:GO:0008283 GO:GO:0001701 GO:GO:0042254
GO:GO:0048872 GO:GO:0006361 GO:GO:0007000 GO:GO:0007028
GO:GO:2000142 CTD:54700 KO:K15216 InterPro:IPR007991
PANTHER:PTHR12790 GeneTree:ENSGT00390000001488
RefSeq:XP_003362032.1 Ensembl:ENSSSCT00000026383 GeneID:100624003
KEGG:ssc:100624003 OMA:ICTIECY Uniprot:I3LD85
Length = 430
Score = 256 (95.2 bits), Expect = 1.9e-20, Sum P(2) = 1.9e-20
Identities = 87/251 (34%), Positives = 118/251 (47%)
Query: 280 KSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVF 339
K L +LI + D L++ T H SC ++F MFY C+ L FA +
Sbjct: 119 KDLYRDLIT-IFDKLLLPT--HA-SCH-----VQFFMFYLCSFK-----LGFAEAFLEHL 164
Query: 340 VSGLYPP----LTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINP 395
L P + R +A +Y+ SFL+RA+F+ + S L LV+W Y N D
Sbjct: 165 WKKLQDPNNPAIIRQAAANYIGSFLARAKFIPLITVKSCLDLLVNWLHVYLN--NQDSGA 222
Query: 396 KA------HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQL-LLMPL--ETVLKHDLNPLK 446
KA H FYS CQA+ Y FR R ++ LK L L L E ++ LNPLK
Sbjct: 223 KAFCDVALHGPFYSACQAVFYTFVFRHRQLLS-GNLKEGLRYLQSLNFERIVMSQLNPLK 281
Query: 447 VCLPSVVSEFLQQSKAARLFTVSETFVFNDL--LESELSRAFGG------LERLDMFFPF 498
+CLPSVV+ F + +L N+L L + GG LD FFPF
Sbjct: 282 ICLPSVVNFFAAITSKYQLVFCYTLIERNNLKMLPVXIRNTAGGDSVQTCTNPLDTFFPF 341
Query: 499 DPCLLKKSDRF 509
DPC+LK+S +F
Sbjct: 342 DPCVLKRSKKF 352
Score = 48 (22.0 bits), Expect = 1.9e-20, Sum P(2) = 1.9e-20
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 201 YMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDI 241
Y+ N L++ S +R +L V+++L+ LD+ DI
Sbjct: 3 YVHNLLRI--SVYFPTLRHEILELVIEKLLKLDVNASRQDI 41
>FB|FBgn0032988 [details] [associations]
symbol:Tif-IA "Tif-IA" species:7227 "Drosophila melanogaster"
[GO:0005736 "DNA-directed RNA polymerase I complex" evidence=ISS]
[GO:0006356 "regulation of transcription from RNA polymerase I
promoter" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=IDA] Pfam:PF05327 EMBL:AE014134 GO:GO:0042254
eggNOG:NOG275643 KO:K15216 OMA:STPWFLM InterPro:IPR007991
PANTHER:PTHR12790 GeneTree:ENSGT00390000001488 EMBL:AY061123
RefSeq:NP_788084.1 UniGene:Dm.485 IntAct:Q9V9M6 MINT:MINT-313590
STRING:Q9V9M6 EnsemblMetazoa:FBtr0085955 GeneID:35454
KEGG:dme:Dmel_CG3278 UCSC:CG3278-RA CTD:35454 FlyBase:FBgn0032988
InParanoid:Q9V9M6 OrthoDB:EOG4FTTG5 GenomeRNAi:35454 NextBio:793599
Uniprot:Q9V9M6
Length = 611
Score = 207 (77.9 bits), Expect = 2.9e-14, Sum P(2) = 2.9e-14
Identities = 69/228 (30%), Positives = 106/228 (46%)
Query: 290 LLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTR 349
L L+ L E L T ++F++FYA +L ++ V + + R
Sbjct: 320 LFKMLLYLFDEVLLPSHNTHH-VQFILFYATSLRSVYSEAFLDSLWTKVQNPNV-SAVIR 377
Query: 350 MSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGG---DINPKAHRVFYSGCQ 406
+AV Y+ASFLSRARFL + LK L W Y + + + KA+ VFYS CQ
Sbjct: 378 HAAVGYMASFLSRARFLPLSTVTFYLKELTRWAHTYIDDSDAYKQNCSLKANLVFYSVCQ 437
Query: 407 AIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLF 466
A+ Y++ FR + + + L + L + LNPL+ CL V + F ++ +L
Sbjct: 438 AVFYLIAFRAKDLTASSKDLLFLQSLQLSRLAMCHLNPLRYCLAPVATAFAGVTRTYQL- 496
Query: 467 TVSETFVFNDLLESELSRAFGGL-----ERLDMFFPFDPCLLKKSDRF 509
T V +L+ +G E L+ FFPFDP +LK S ++
Sbjct: 497 AYCHT-VLERNARRKLATVYGHEKCMPDETLESFFPFDPYVLKLSKKY 543
Score = 52 (23.4 bits), Expect = 2.9e-14, Sum P(2) = 2.9e-14
Identities = 18/78 (23%), Positives = 38/78 (48%)
Query: 102 DVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGL-------ERK-- 152
++++A I L ++ +Y+ ++ L+ ++ P +D+ HG E K
Sbjct: 112 EIIEAYTEFCIELMVTHNRYLPIGVSKLIVHWIPGD--MDESDWVHGCPSEHVRNELKPI 169
Query: 153 HQVLSRVHAALKSIFDLV 170
H+VL R+ A+ FD++
Sbjct: 170 HKVLDRILTAVPMAFDII 187
Score = 41 (19.5 bits), Expect = 4.0e-13, Sum P(2) = 4.0e-13
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 119 GKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPT 175
GK +D CL +L F +L E + E + + +R+ L +FD V L P+
Sbjct: 285 GKTLDVCLFLLYKFFDGKC----RLNE-NSSEEQRRTANRLFKMLLYLFDEV-LLPS 335
>UNIPROTKB|G4MUE6 [details] [associations]
symbol:MGG_01654 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
Pfam:PF05327 EMBL:CM001232 KO:K15216 InterPro:IPR007991
PANTHER:PTHR12790 RefSeq:XP_003714640.1 EnsemblFungi:MGG_01654T0
GeneID:2679331 KEGG:mgr:MGG_01654 Uniprot:G4MUE6
Length = 692
Score = 119 (46.9 bits), Expect = 5.1e-11, Sum P(3) = 5.1e-11
Identities = 60/254 (23%), Positives = 104/254 (40%)
Query: 11 ESHEMEDVNISDLELVYH-VREALTSVQSGDNDNYNQLVAVMHLSGR--LDP---DNRAL 64
ES+ D+ + LE VR AL G+ + Y L A+ + L P D+
Sbjct: 70 ESNMTVDIGMRTLEETKREVRSALEDRVRGETEGYENLKAIFQNDRQRYLPPIVGDDEDC 129
Query: 65 LETS-----LKALSGAVSYIDISHHESLLVSIFGMSMW-NYDPDVMDALKGLIISLAASN 118
L+ + ALS +D S + L+ I W D A + +L ++
Sbjct: 130 LKPQELIVYVVALSTCAPMLDRSCSD--LIKIVTKCSWLGRDDGFCKAYTQFLAALISAQ 187
Query: 119 GKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLS-RVHAALKSIFDLVPLAPTRL 177
G ++ L M+V F Y P + R+H L+ + L P A L
Sbjct: 188 GTTLELVLAMIVEKFK--DYRESAWSVPDFPKVSFDTAQDRLHGGLRYLLRLFPAARPVL 245
Query: 178 LPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIG 237
++ ++ P + E K+ Y++N L L A + ++ +VDRL+ +D+++
Sbjct: 246 CSLLAKQFPYLE---ESKKVHTTYVKNLLLLRKYAPD--LGQDIMELIVDRLVKIDVQVQ 300
Query: 238 WD-DILHDDFSKGI 250
+D D + DD + I
Sbjct: 301 FDLDDMDDDLTAAI 314
Score = 108 (43.1 bits), Expect = 5.1e-11, Sum P(3) = 5.1e-11
Identities = 41/146 (28%), Positives = 70/146 (47%)
Query: 280 KSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVF 339
K + G+LI++ ++ L++ T++ R +F++F+ PE L T+ F
Sbjct: 387 KEVLGDLISDFVN-LVLPTYK--------SRHTQFLVFHFSQYSPELMDLFVGTLFNMAF 437
Query: 340 VSGLYPPLTRMSAVSYLASFLSRARFLSPCFI---VSLLKRLVDWCLEYCNILGGDINPK 396
S P R SA +YLAS+++R + + V LL VD ++ N G P
Sbjct: 438 ESNR-PMALRQSATAYLASYVARGAAVPAEIVRNVVELLCHHVD--VQMRNHADGCRGPD 494
Query: 397 AHRVFYSGC--QAIMYVLCFRMRSIM 420
R + C QA++Y+ CFR R ++
Sbjct: 495 LRRYKHLYCLVQALLYIFCFRWRELV 520
Score = 89 (36.4 bits), Expect = 4.2e-09, Sum P(3) = 4.2e-09
Identities = 37/130 (28%), Positives = 55/130 (42%)
Query: 390 GGDINPKAHRVFYSGCQAIMYVLCFRMRSIMD-IPRL-----KSQLLLMPLETV--LKHD 441
G D+ H Y QA++Y+ CFR R ++ P L KS L LE + K
Sbjct: 492 GPDLRRYKH--LYCLVQALLYIFCFRWRELVAWAPELVDPSEKSSYLGHDLEWIPGFKES 549
Query: 442 L--------NPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLE-SELSR---AFGGL 489
+ NPL+VC P +V EF ++ R V N + S+ + + GG
Sbjct: 550 MSRIIYSKFNPLRVCSPGIVHEFADHARLLRFMYVFPLLESNKRIHLSQFASGDYSTGGA 609
Query: 490 ERLDMFFPFD 499
R + P+D
Sbjct: 610 LRDTCYDPYD 619
Score = 50 (22.7 bits), Expect = 5.1e-11, Sum P(3) = 5.1e-11
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 488 GLERLDMFFPFDPCLLKKSDRF 509
GL+ L+ +FPFDP L S R+
Sbjct: 622 GLQ-LEAYFPFDPYQLPTSKRW 642
>SGD|S000001608 [details] [associations]
symbol:RRN3 "Protein required for transcription of rDNA by
RNA polymerase I" species:4932 "Saccharomyces cerevisiae"
[GO:0001042 "RNA polymerase I core binding" evidence=IDA;IPI]
[GO:0001082 "RNA polymerase I transcription factor binding
transcription factor activity" evidence=IGI;IDA;IPI] [GO:0001181
"core RNA polymerase I binding transcription factor activity"
evidence=IGI;IDA;IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0001180
"transcription initiation from RNA polymerase I promoter for
nuclear large rRNA transcript" evidence=IMP] [GO:0001179 "RNA
polymerase I transcription factor binding" evidence=IDA;IPI]
InterPro:IPR016024 SGD:S000001608 Pfam:PF05327 SUPFAM:SSF48371
GO:GO:0005730 EMBL:BK006944 GO:GO:0001042 eggNOG:NOG275643
KO:K15216 InterPro:IPR007991 PANTHER:PTHR12790
GeneTree:ENSGT00390000001488 EMBL:Z71927 EMBL:Z28125 PIR:S37954
RefSeq:NP_012797.1 PDB:3TJ1 PDBsum:3TJ1 ProteinModelPortal:P36070
SMR:P36070 DIP:DIP-6657N IntAct:P36070 MINT:MINT-624762
STRING:P36070 PaxDb:P36070 PeptideAtlas:P36070 PRIDE:P36070
EnsemblFungi:YKL125W GeneID:853734 KEGG:sce:YKL125W CYGD:YKL125w
HOGENOM:HOG000093739 OMA:MYVLCFR OrthoDB:EOG4TMV9M NextBio:974778
Genevestigator:P36070 GermOnline:YKL125W GO:GO:0001181
GO:GO:0001179 GO:GO:0001082 GO:GO:0001180 Uniprot:P36070
Length = 627
Score = 119 (46.9 bits), Expect = 3.7e-06, Sum P(3) = 3.7e-06
Identities = 41/168 (24%), Positives = 72/168 (42%)
Query: 310 RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPC 369
R I+++MF+ E F L D+ + ++ ++ YL S+++RA+ LS
Sbjct: 379 RSIQYIMFHVSQQQLELMD-SFLVTLIDISFAVNEAAEKKIKSLQYLGSYIARAKKLSRT 437
Query: 370 FIVSLLKRLVDWCLEYCNILGGDINPKA----HRVFYSGCQAIMYVLCFRMRSIMDIPRL 425
I+ + L W Y +++ + + FY+ QA+ Y+ CFR D
Sbjct: 438 QIIFVASYLTSWLNRYVIEREEEVDQRGGMERFKHFYAAFQALCYIFCFRHNIFRDTDGN 497
Query: 426 KSQLLLMPLETVLKHDLNPLKVCLPSVVSEFL---QQSKAARLFTVSE 470
L + ++ NPLK C +V+ F QQ A F++ E
Sbjct: 498 WECELDKFFQRMVISKFNPLKFCNENVMLMFARIAQQESVAYCFSIIE 545
Score = 65 (27.9 bits), Expect = 3.7e-06, Sum P(3) = 3.7e-06
Identities = 23/89 (25%), Positives = 42/89 (47%)
Query: 160 HAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLES--SAMGELV 217
H LK ++P + + + + P NK++ + +V Y N LKL S +G +
Sbjct: 173 HDMLKYFLRMIPSSMGFIDTYLAKFFP---NKNDTRRKLVNYTSNLLKLRGYCSELGFQI 229
Query: 218 RSTLLMAVVDRLIDLDMEIG-WDDILHDD 245
S L+ ++ ++L E+ DD + DD
Sbjct: 230 WSLLIEKIISIDVELQNELDELDDDVDDD 258
Score = 43 (20.2 bits), Expect = 3.7e-06, Sum P(3) = 3.7e-06
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 492 LDMFFPFDPCLLK 504
L +FP+DP LK
Sbjct: 588 LQSYFPYDPLFLK 600
>CGD|CAL0002535 [details] [associations]
symbol:RRN3 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0001180 "transcription initiation from RNA
polymerase I promoter for nuclear large rRNA transcript"
evidence=IEA] [GO:0001082 "RNA polymerase I transcription factor
binding transcription factor activity" evidence=IEA] [GO:0001181
"core RNA polymerase I binding transcription factor activity"
evidence=IEA] [GO:0001042 "RNA polymerase I core binding"
evidence=IEA] [GO:0001169 "RNA polymerase I CORE element
sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0001179 "RNA polymerase I transcription factor
binding" evidence=IEA] CGD:CAL0002535 Pfam:PF05327 eggNOG:NOG275643
KO:K15216 InterPro:IPR007991 PANTHER:PTHR12790 EMBL:AACQ01000264
EMBL:AACQ01000263 RefSeq:XP_710469.1 RefSeq:XP_710488.1
STRING:Q59L42 GeneID:3647925 GeneID:3647935 KEGG:cal:CaO19.1923
KEGG:cal:CaO19.9479 Uniprot:Q59L42
Length = 556
Score = 139 (54.0 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 103/471 (21%), Positives = 193/471 (40%)
Query: 11 ESHEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLS-GRLDPDNRALLETSL 69
+ + M D S+ +V+ AL S+++ D N + ++L G P++ L + +
Sbjct: 19 KQNTMSDDQFSEKMYTTYVKSALLSLET-DALPINTITDKINLPIGH--PESITLPQFQI 75
Query: 70 KALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTML 129
L+G VS + + IF + +N+ D+ D G A S ++ L L
Sbjct: 76 -VLNGLVSNTSRLDNTACSNLIFAILRYNW-LDIADT-DGYH-RFAESYSQF----LVAL 127
Query: 130 VSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVH 189
VS T P Y L ++ E + H L I VP + + ++ + P H
Sbjct: 128 VS--TLPKY-LHEVTNKLIQEFDSPNTTHHHEILTKIIKYVPTSINSIPQLLQKNFP--H 182
Query: 190 NKHERLKMIVVYMEN-------TLKLESSAMGELVRSTLLMAVV--DRLIDLDMEIGWDD 240
+ K + Y++N T +L+ S ++ S++ + V + L DLD E +D
Sbjct: 183 HISSSTKELTNYVQNLVRVLDYTPELQFSIWQLIIESSIKLDVELQNELDDLDDE-EIED 241
Query: 241 IL---HDDFSKGIFXXXXXXXXXXXXXXXXXXXXL---PSGSLSRKSLSGNLIAELLDSL 294
++ D S+ + L + S + + L+ L +++
Sbjct: 242 LISGEEDSDSEDEWEVTTTSIKSLSSKLDSIISTLLTTTANSFTIEELNNGNGVNLFNTI 301
Query: 295 MVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVS 354
L H+ T + I+F++F+ PE + +L DV + R+ A+
Sbjct: 302 NSLFKSHILPTHFT-KSIQFILFHITQFQPELAD-SYLVLLIDVAFNPSEILEKRLKAMQ 359
Query: 355 YLASFLSRARFLSPCFIVSLLKRLVDWCLEYC-----NI-LGGDINP---KAHRVFYSGC 405
YL+S+++RA+ LS ++ ++ LV W ++ + GD + ++FY+
Sbjct: 360 YLSSYIARAKNLSRHQVIFIVSYLVGWLNKFIIEREQEVESSGDKQVGGMERFKLFYAAF 419
Query: 406 QAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEF 456
QA++Y+ CFR + L + + NPLK C +VV F
Sbjct: 420 QALLYIFCFRHELLSTTENDWECDLDKFFQRAILTKFNPLKFCDETVVYIF 470
>WB|WBGene00007980 [details] [associations]
symbol:C36E8.1 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] Pfam:PF05327 GO:GO:0008340
GO:GO:0040010 GO:GO:0000003 eggNOG:NOG275643 KO:K15216
InterPro:IPR007991 PANTHER:PTHR12790 GeneTree:ENSGT00390000001488
OMA:CELAIRH EMBL:Z35597 PIR:T19785 RefSeq:NP_497803.1
ProteinModelPortal:P48322 STRING:P48322 PaxDb:P48322
EnsemblMetazoa:C36E8.1.1 EnsemblMetazoa:C36E8.1.2 GeneID:175517
KEGG:cel:CELE_C36E8.1 UCSC:C36E8.1.1 CTD:175517 WormBase:C36E8.1
HOGENOM:HOG000017211 InParanoid:P48322 NextBio:888492
Uniprot:P48322
Length = 654
Score = 122 (48.0 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 55/206 (26%), Positives = 84/206 (40%)
Query: 312 IEFVMFYACALDPENCGLRFATMLADVFVSGLYPPL-TRMS--AVSYLASFLSRARFLSP 368
+ F+ Y C+L E + L V + P R S A SYLA+FL+RA+++
Sbjct: 373 VSFIWLYFCSLSQEY-EKKMLEHLWQVTIRMPRAPADARKSQGAASYLAAFLARAKYVKK 431
Query: 369 CFIVSLLKRLVDWCLEYCNILGG---DINP--KAHRVFYSGCQAIMYVLCFRMRSIMDIP 423
+ L+ + W Y + G I P + H FYS QA V FR + +
Sbjct: 432 STAFTWLEEVYIWLRHYVDQFGSGSSQILPGLQRHGTFYSVSQAFFLVFAFRYKEFVKNK 491
Query: 424 RLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELS 483
+ + + V+ L PLK V F +++ +L + E+
Sbjct: 492 DMLETIRRWGVGRVVHSPLEPLKYVSKPVARCFSAITRSLQLVYCNHIIPIE-----EVQ 546
Query: 484 RAFGGLERLDMFFPFDPCLLKKSDRF 509
R F DMF PFD LK+S +F
Sbjct: 547 RPFD-----DMF-PFDCYHLKESSKF 566
Score = 54 (24.1 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 32/170 (18%), Positives = 67/170 (39%)
Query: 85 ESLLVSIFGMSMWNYDP-DVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDK- 142
E+L+ + + W+ P V++ + + LA + + + + +V P ++
Sbjct: 96 ETLVKRLLSLR-WDKIPGSVIERFRNFLCELAIRHLCFTEEVYSAVVERLVPQISVTEET 154
Query: 143 ----LKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMI 198
L ++ +H H + S+ PL+ LL V + MP H + +
Sbjct: 155 GVVTLILTEKVQNEH--FEMAHHIISSVLRCFPLSARALLKCVKRVMP--HFTRPSVT-V 209
Query: 199 VVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSK 248
YM N + ++ + + + AV +RL D W +++ SK
Sbjct: 210 AGYMRNLILMQKYIPASISKD-VWEAVFERLAKDDTH-NWKCEQNEEMSK 257
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.139 0.409 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 515 495 0.00083 119 3 11 22 0.47 33
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 19
No. of states in DFA: 616 (65 KB)
Total size of DFA: 278 KB (2146 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 41.40u 0.12s 41.52t Elapsed: 00:00:02
Total cpu time: 41.41u 0.12s 41.53t Elapsed: 00:00:02
Start: Tue May 21 05:40:23 2013 End: Tue May 21 05:40:25 2013