BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010207
(515 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|296088515|emb|CBI37506.3| unnamed protein product [Vitis vinifera]
Length = 607
Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/532 (68%), Positives = 423/532 (79%), Gaps = 26/532 (4%)
Query: 1 MGVELPIDHAESHEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPD 60
MGVEL D A HEME+VN SD ELVYHVR AL SV GD+D+Y+QL+ V+H RL PD
Sbjct: 1 MGVELATDRAGFHEMEEVNFSDSELVYHVRHALQSVPLGDSDSYDQLIGVLHHKERLAPD 60
Query: 61 NRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGK 120
ALL TSLKALSGAVS ID+ HH+SLL SIFGMS+WNY PDVMDAL LI+SLAAS+G
Sbjct: 61 EVALLVTSLKALSGAVSCIDMVHHKSLLSSIFGMSLWNYGPDVMDALLELILSLAASSGN 120
Query: 121 YVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPI 180
Y+D L MLVSNF PP LD LK+P GL RK QVLSRVH+ LK I DLVPLAP+RL+PI
Sbjct: 121 YLDCSLDMLVSNFMPPYSLLDFLKQPRGLARKDQVLSRVHSTLKDIADLVPLAPSRLVPI 180
Query: 181 VVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDD 240
V+QRMP V K +I++Y+EN L+LE A+ ELV + +L+A++DRL+DLD+EI W++
Sbjct: 181 VIQRMPNVFTKE---PLIMIYVENMLRLEGGAIRELVGNMMLVALMDRLVDLDVEIAWEE 237
Query: 241 ILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFE 300
+L DD SKGIFEMELED+EE ADD E G EL GSLSRKSL GNLIAE LDSLMVLTFE
Sbjct: 238 VLQDDCSKGIFEMELEDMEEPADDVENDGGELHRGSLSRKSLGGNLIAEKLDSLMVLTFE 297
Query: 301 HLESCEGTGRLIE-----------------------FVMFYACALDPENCGLRFATMLAD 337
HLESCE GRLIE FVMFYACALDPENCG+RFA +LAD
Sbjct: 298 HLESCEAGGRLIEVFETLVLSFQTTVLNAFKSKFAQFVMFYACALDPENCGVRFARVLAD 357
Query: 338 VFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA 397
FV +PPL RMSAV+YLAS+LSR +FL+ F+ ++L+RLV WCLEYC I GDINPKA
Sbjct: 358 FFVCSTFPPLNRMSAVAYLASYLSRGKFLTASFVANILERLVVWCLEYCKIHDGDINPKA 417
Query: 398 HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFL 457
H+VFYSGCQAIMYVLCFRMRS+M++P L+SQLLL+PLET+LKH L+PLKVCLPS+V EFL
Sbjct: 418 HQVFYSGCQAIMYVLCFRMRSMMNVPHLRSQLLLLPLETILKHPLSPLKVCLPSIVEEFL 477
Query: 458 QQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
+Q+KAARLFTVSETF+F+DLLESELSRAFGG+ERLDMFFPFDPCLLKK DRF
Sbjct: 478 RQAKAARLFTVSETFIFSDLLESELSRAFGGIERLDMFFPFDPCLLKKCDRF 529
>gi|359477042|ref|XP_002263973.2| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Vitis vinifera]
Length = 636
Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/538 (67%), Positives = 422/538 (78%), Gaps = 29/538 (5%)
Query: 1 MGVELPIDHAESHEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPD 60
MGVEL D A HEME+VN SD ELVYHVR AL SV GD+D+Y+QL+ V+H RL PD
Sbjct: 1 MGVELATDRAGFHEMEEVNFSDSELVYHVRHALQSVPLGDSDSYDQLIGVLHHKERLAPD 60
Query: 61 NRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGK 120
ALL TSLKALSGAVS ID+ HH+SLL SIFGMS+WNY PDVMDAL LI+SLAAS+G
Sbjct: 61 EVALLVTSLKALSGAVSCIDMVHHKSLLSSIFGMSLWNYGPDVMDALLELILSLAASSGN 120
Query: 121 YVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPI 180
Y+D L MLVSNF PP LD LK+P GL RK QVLSRVH+ LK I DLVPLAP+RL+PI
Sbjct: 121 YLDCSLDMLVSNFMPPYSLLDFLKQPRGLARKDQVLSRVHSTLKDIADLVPLAPSRLVPI 180
Query: 181 VVQRMPTVHNKH------ERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDM 234
V+QRMP V K L I +Y+EN L+LE A+ ELV + +L+A++DRL+DLD+
Sbjct: 181 VIQRMPNVFTKEPVSSICSTLFRIQIYVENMLRLEGGAIRELVGNMMLVALMDRLVDLDV 240
Query: 235 EIGWDDILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSL 294
EI W+++L DD SKGIFEMELED+EE ADD E G EL GSLSRKSL GNLIAE LDSL
Sbjct: 241 EIAWEEVLQDDCSKGIFEMELEDMEEPADDVENDGGELHRGSLSRKSLGGNLIAEKLDSL 300
Query: 295 MVLTFEHLESCEGTGRLIE-----------------------FVMFYACALDPENCGLRF 331
MVLTFEHLESCE GRLIE FVMFYACALDPENCG+RF
Sbjct: 301 MVLTFEHLESCEAGGRLIEVFETLVLSFQTTVLNAFKSKFAQFVMFYACALDPENCGVRF 360
Query: 332 ATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGG 391
A +LAD FV +PPL RMSAV+YLAS+LSR +FL+ F+ ++L+RLV WCLEYC I G
Sbjct: 361 ARVLADFFVCSTFPPLNRMSAVAYLASYLSRGKFLTASFVANILERLVVWCLEYCKIHDG 420
Query: 392 DINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPS 451
DINPKAH+VFYSGCQAIMYVLCFRMRS+M++P L+SQLLL+PLET+LKH L+PLKVCLPS
Sbjct: 421 DINPKAHQVFYSGCQAIMYVLCFRMRSMMNVPHLRSQLLLLPLETILKHPLSPLKVCLPS 480
Query: 452 VVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
+V EFL+Q+KAARLFTVSETF+F+DLLESELSRAFGG+ERLDMFFPFDPCLLKK DRF
Sbjct: 481 IVEEFLRQAKAARLFTVSETFIFSDLLESELSRAFGGIERLDMFFPFDPCLLKKCDRF 538
>gi|449480195|ref|XP_004155826.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Cucumis sativus]
Length = 625
Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust.
Identities = 335/532 (62%), Positives = 392/532 (73%), Gaps = 27/532 (5%)
Query: 1 MGVELPIDHAESHEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPD 60
MG EL + A+ H MEDVN++D +LV +R L+SV GD D YNQLV V+H RL PD
Sbjct: 1 MGAELENNQAQLHAMEDVNLTDAQLVDFIRGFLSSVSLGDIDGYNQLVGVIHHRDRLSPD 60
Query: 61 NRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGK 120
ALL T LKALSGAVS IDI HESLL +IF MS+W+Y +VMDAL LIISLA SNGK
Sbjct: 61 EVALLVTCLKALSGAVSCIDIILHESLLAAIFKMSLWDYGSNVMDALIELIISLAVSNGK 120
Query: 121 YVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPI 180
YVDSCL MLV+NF PP+ ++D LK+PHGL RK +VLSRVH ALK I DLVPLAP RL
Sbjct: 121 YVDSCLDMLVNNFMPPNSYMDLLKKPHGLTRKEEVLSRVHTALKDISDLVPLAPLRLEQK 180
Query: 181 VVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDD 240
VV +M V + +Y+EN L+LE A+ E V +L A+VD+L+DLD+EIGWDD
Sbjct: 181 VVHKMQRVFFNE---SLTTIYVENMLRLEKGALSEFVGRKILTALVDKLLDLDVEIGWDD 237
Query: 241 ILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFE 300
IL DDFSKGIFEMELED ++ DD + ELP LSR+SL GN+IAE LDSL+VLTFE
Sbjct: 238 ILQDDFSKGIFEMELEDDDDTTDDINEDSSELPR-ELSRRSLGGNVIAETLDSLIVLTFE 296
Query: 301 HLESCEGTGRLIE-----------------------FVMFYACALDPENCGLRFATMLAD 337
HLESCE GRL E F++FYAC+LDPE CG RFA LAD
Sbjct: 297 HLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFIVFYACSLDPEVCGARFAISLAD 356
Query: 338 VFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA 397
+FVS PPL RMSAVSYLASFLSR +FL+ + ++LKRLVDWCLEY L D NPKA
Sbjct: 357 MFVSCNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLVDWCLEYGKTLNVDPNPKA 416
Query: 398 HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFL 457
H+VFYSGCQAIMYVLCFRMRSI++IPRLKSQLLLMP+ +L H L+PLKVCLPS+V EFL
Sbjct: 417 HKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLLTHRLSPLKVCLPSIVEEFL 476
Query: 458 QQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
+Q+K A LFT SE F+FN LLES+ SR+FGGLERLDMFFPFDPCLLKK DR+
Sbjct: 477 RQAKVANLFTPSENFIFNGLLESDYSRSFGGLERLDMFFPFDPCLLKKCDRY 528
>gi|449432152|ref|XP_004133864.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Cucumis sativus]
Length = 626
Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust.
Identities = 335/532 (62%), Positives = 392/532 (73%), Gaps = 27/532 (5%)
Query: 1 MGVELPIDHAESHEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPD 60
MG EL + A+ H MEDVN++D +LV +R L+SV GD D YNQLV V+H RL PD
Sbjct: 1 MGAELENNQAQLHAMEDVNLTDAQLVDFIRGFLSSVSLGDIDGYNQLVGVIHHRDRLSPD 60
Query: 61 NRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGK 120
ALL T LKALSGAVS IDI HESLL +IF MS+W+Y +VMDAL LIISLA SNGK
Sbjct: 61 EVALLVTCLKALSGAVSCIDIILHESLLAAIFKMSLWDYGSNVMDALIELIISLAVSNGK 120
Query: 121 YVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPI 180
YVDSCL MLV+NF PP+ ++D LK+PHGL RK +VLSRVH ALK I DLVPLAP RL
Sbjct: 121 YVDSCLDMLVNNFMPPNSYMDLLKKPHGLTRKEEVLSRVHTALKDISDLVPLAPLRLEQK 180
Query: 181 VVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDD 240
VV +M V + +Y+EN L+LE A+ E V +L A+VD+L+DLD+EIGWDD
Sbjct: 181 VVHKMQRVFFNE---SLTTIYVENMLRLEKGALSEFVGRKILTALVDKLLDLDVEIGWDD 237
Query: 241 ILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFE 300
IL DDFSKGIFEMELED ++ DD + ELP LSR+SL GN+IAE LDSL+VLTFE
Sbjct: 238 ILQDDFSKGIFEMELEDDDDTTDDINEDSSELPR-ELSRRSLGGNVIAETLDSLIVLTFE 296
Query: 301 HLESCEGTGRLIE-----------------------FVMFYACALDPENCGLRFATMLAD 337
HLESCE GRL E F++FYAC+LDPE CG RFA LAD
Sbjct: 297 HLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFIVFYACSLDPEVCGARFAISLAD 356
Query: 338 VFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA 397
+FVS PPL RMSAVSYLASFLSR +FL+ + ++LKRLVDWCLEY L D NPKA
Sbjct: 357 MFVSCNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLVDWCLEYGKTLNVDPNPKA 416
Query: 398 HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFL 457
H+VFYSGCQAIMYVLCFRMRSI++IPRLKSQLLLMP+ +L H L+PLKVCLPS+V EFL
Sbjct: 417 HKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLLTHRLSPLKVCLPSIVEEFL 476
Query: 458 QQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
+Q+K A LFT SE F+FN LLES+ SR+FGGLERLDMFFPFDPCLLKK DR+
Sbjct: 477 RQAKVANLFTPSENFIFNGLLESDYSRSFGGLERLDMFFPFDPCLLKKCDRY 528
>gi|356531325|ref|XP_003534228.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Glycine max]
Length = 628
Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust.
Identities = 312/525 (59%), Positives = 396/525 (75%), Gaps = 27/525 (5%)
Query: 8 DHAESHEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRALLET 67
D E +ME+ + SD +LV+H R L +V +GD +NY++LV +H L+PD A+L T
Sbjct: 8 DKEEFSQMENNDFSDSQLVHHFRGVLVAVTTGDRENYDELVGYLHPKKHLNPDEVAILVT 67
Query: 68 SLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLT 127
+LKALSGAVSYID HHESLL ++ MS+WN D+MDAL LIISLA SNGKY+D CL
Sbjct: 68 TLKALSGAVSYIDSVHHESLLFAVSRMSLWNCGIDIMDALLELIISLAVSNGKYIDWCLE 127
Query: 128 MLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPT 187
MLV NF PP Y LD L++ +G++RK++VLSRVHAALK I DLVPLAP RL PIV+Q+MP+
Sbjct: 128 MLVKNFVPPFYLLDSLRQENGIDRKNKVLSRVHAALKEIADLVPLAPLRLSPIVIQKMPS 187
Query: 188 VHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFS 247
V +K IV+Y+EN L+LES A+GE V ST+L A+VDRL++LD+EIGWD IL +D +
Sbjct: 188 VFSKETE---IVMYVENMLRLESGALGETVGSTMLPALVDRLLELDVEIGWDGILQED-A 243
Query: 248 KGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEG 307
KGIFEMELEDV E D+ E L S L+RK+L GNL+ E LDSLMVL F HLESC+
Sbjct: 244 KGIFEMELEDVTEFTDEDENCDSMLSSELLNRKNLQGNLVVEKLDSLMVLAFLHLESCQN 303
Query: 308 TGRLIE-----------------------FVMFYACALDPENCGLRFATMLADVFVSGLY 344
+GRL E FVMFYACALDPE CG++FA +LAD+F
Sbjct: 304 SGRLAEVFNTLLASFQRTVLNAYKSKFTQFVMFYACALDPEGCGVKFAMVLADMFGGDAN 363
Query: 345 PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKAHRVFYSG 404
PP+TRMSAV+YLAS+L+RA+FLS + S+++ LVDWC YC D+NP+AH+VFYSG
Sbjct: 364 PPITRMSAVAYLASYLTRAKFLSAALVTSIIQSLVDWCYAYCKFRDFDMNPRAHQVFYSG 423
Query: 405 CQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAAR 464
CQAIMY++CFRMRS+MD+PRLK QLL MP+E +LKH L+PLKVCLP+VV EFL+Q+KAA+
Sbjct: 424 CQAIMYIMCFRMRSLMDVPRLKLQLLNMPMEAILKHKLSPLKVCLPTVVVEFLRQAKAAQ 483
Query: 465 LFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
LF SE+FVF+D+LES+LS+AFGG++RLDMFFPFDPCLLK+S+ +
Sbjct: 484 LFMASESFVFDDMLESDLSKAFGGMDRLDMFFPFDPCLLKRSESY 528
>gi|356559191|ref|XP_003547884.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Glycine max]
Length = 627
Score = 632 bits (1631), Expect = e-178, Method: Compositional matrix adjust.
Identities = 312/525 (59%), Positives = 398/525 (75%), Gaps = 27/525 (5%)
Query: 8 DHAESHEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRALLET 67
+ E +ME+ + SD +LV H R L +V +GD +NY++LV +H L+PD A+L T
Sbjct: 8 NKEEFSQMENDDFSDSQLVRHFRGVLVAVTTGDRENYDELVGYLHPKKNLNPDEVAILVT 67
Query: 68 SLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLT 127
+LKALSGAVSYID HHESLL ++ MS+WNY D+MDAL LIISLAASNGKY+D CL
Sbjct: 68 TLKALSGAVSYIDSVHHESLLFAVSRMSLWNYGIDIMDALLELIISLAASNGKYIDWCLE 127
Query: 128 MLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPT 187
MLV +F PP Y LD L++ +G++RK++VLSRVHAALK I DLVPLAP RL PIV+Q+MP+
Sbjct: 128 MLVKHFVPPFYLLDSLRQENGIDRKNKVLSRVHAALKEIADLVPLAPLRLSPIVIQKMPS 187
Query: 188 VHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFS 247
V +K IV+Y+EN L+LES A+GE V S +L A+VDRL++LD+EIGWD IL +D +
Sbjct: 188 VFSKETE---IVMYVENMLRLESGAIGETVGSIMLPALVDRLLELDVEIGWDGILQED-A 243
Query: 248 KGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEG 307
KGIFEMELEDV E AD+ E PS L+RK+L GNL+ E LDSLMVL F HLESC+
Sbjct: 244 KGIFEMELEDVTEFADEDENCDSMPPSELLNRKNLQGNLVVEKLDSLMVLAFLHLESCQS 303
Query: 308 TGRLIE-----------------------FVMFYACALDPENCGLRFATMLADVFVSGLY 344
+GRL E +VMFYACALDPE CG++FA +LAD+F +
Sbjct: 304 SGRLTEVFDTLLASFQRTVLNAYKSKFTQYVMFYACALDPEGCGVKFAMVLADMFGCDVN 363
Query: 345 PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKAHRVFYSG 404
PP+TRMSA +YLAS+L+RA+FLS + ++++ LVDWC YC + D+NP+AH+VFYSG
Sbjct: 364 PPITRMSAAAYLASYLTRAKFLSAALVTNIIQSLVDWCYAYCKLRDFDMNPRAHQVFYSG 423
Query: 405 CQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAAR 464
CQAIMY+LCFRMRS+MDIPRLK QLL MP+E +LKH L+PLKVCLP+VV EFL+Q+KAA+
Sbjct: 424 CQAIMYILCFRMRSLMDIPRLKLQLLNMPMEAILKHKLSPLKVCLPTVVVEFLRQAKAAQ 483
Query: 465 LFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
LF SE+FVF+D+LES+LS+AFGG++RLDMFFPFDPCLLKKS+ +
Sbjct: 484 LFMASESFVFDDMLESDLSKAFGGIDRLDMFFPFDPCLLKKSESY 528
>gi|255566898|ref|XP_002524432.1| transcription initiation factor ia, putative [Ricinus communis]
gi|223536316|gb|EEF37967.1| transcription initiation factor ia, putative [Ricinus communis]
Length = 640
Score = 622 bits (1605), Expect = e-175, Method: Compositional matrix adjust.
Identities = 333/544 (61%), Positives = 391/544 (71%), Gaps = 38/544 (6%)
Query: 1 MGVELPIDHA-ESHEMED--VNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRL 57
MGVEL + E +MED VN +D +LVYHVR+AL SVQ GD ++Y+QLV VMH S RL
Sbjct: 1 MGVELDSQYKKEIEDMEDDGVNYTDSDLVYHVRDALHSVQYGDTNSYDQLVGVMHHSQRL 60
Query: 58 DPDNRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAAS 117
PD+ ALL TSLKALSGAVSYID HH+ LL SIFGMS+WNY PDVM+AL LII+LAAS
Sbjct: 61 TPDDVALLLTSLKALSGAVSYIDECHHDRLLQSIFGMSIWNYGPDVMEALLELIIALAAS 120
Query: 118 NGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRL 177
NGKY+D CL MLV+NF PP Y +D LK P G +K QVLSR+H AL+ I L+P+A +RL
Sbjct: 121 NGKYIDPCLKMLVTNFVPPMYLIDILKLPRGQAKKEQVLSRLHTALEDIAHLIPMAASRL 180
Query: 178 LPIVV---QRMPTVHNK---HERLKM---IVVYMENTLKLESSAMGELVRSTLLMAVVDR 228
VV QR+PT K HE+ ++ +Y+EN L+LES A+ E V S +LMAVVD+
Sbjct: 181 STEVVSEIQRIPTTFKKDQYHEKDRVKYRTEIYVENMLRLESGAIREFVGSRMLMAVVDK 240
Query: 229 LIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAADDAEQVG-DELPSGSLSRKSLSGNLI 287
LIDLD+ IGWDDIL DD KGIF +ELED +E +DD E ELP +LS KSL N+
Sbjct: 241 LIDLDVAIGWDDILRDDSCKGIFAIELEDADEVSDDDEYNDYGELPR-TLSHKSLGENVA 299
Query: 288 AELLDSLMVLTFEHLESCEGTGRL-----------------------IEFVMFYACALDP 324
A+LLDSLMV FEHLE C RL +FVMFYACALDP
Sbjct: 300 ADLLDSLMVRIFEHLELCANNKRLNDVFETLLDSFMLTILNTYKSKFAQFVMFYACALDP 359
Query: 325 ENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLE 384
ENCG+ FA L D F G PLTRMSAV+YLAS+L+RA+FL F+ S LKRLVDWC E
Sbjct: 360 ENCGVEFAERLRDRFTYG-ENPLTRMSAVAYLASYLARAKFLPIAFVASTLKRLVDWCSE 418
Query: 385 YCNILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNP 444
YC GD+NPKAHRVFYSGCQAI+YVLCFRM S+MDIP LKSQLL MPLE ++KH L P
Sbjct: 419 YCRNQDGDMNPKAHRVFYSGCQAILYVLCFRMSSMMDIPWLKSQLLHMPLEQIMKHKLGP 478
Query: 445 LKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLK 504
LKVCLPS+V EFL+Q+KAA LFT S+T F D+LESE S+ FGGLERLDMFFPFDPCLL+
Sbjct: 479 LKVCLPSIVEEFLKQAKAAHLFTTSQTSSFEDVLESEFSKDFGGLERLDMFFPFDPCLLR 538
Query: 505 KSDR 508
DR
Sbjct: 539 TCDR 542
>gi|224084016|ref|XP_002307198.1| predicted protein [Populus trichocarpa]
gi|222856647|gb|EEE94194.1| predicted protein [Populus trichocarpa]
Length = 635
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 313/542 (57%), Positives = 384/542 (70%), Gaps = 37/542 (6%)
Query: 1 MGVELPIDHAESHEMED-------VNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHL 53
MGVEL + E MED V+I+D +LVYHVR+AL SV++GD +Y+QLV V+H
Sbjct: 1 MGVELTHQYTEYRAMEDQEEVEEGVSITDWDLVYHVRDALLSVKTGDRSSYHQLVGVLHH 60
Query: 54 SGRLDPDNRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIIS 113
R PD ALL TSLKALSGAVSYI+ H SLL SIFGMSMWN PDVMDAL LII
Sbjct: 61 RDRSAPDKVALLLTSLKALSGAVSYINDVDHVSLLQSIFGMSMWNCAPDVMDALLELIIC 120
Query: 114 LAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLA 173
LAASNGKYVD CL MLV+NF PP D L+ P G +K QVL RVH L+ I DLVPLA
Sbjct: 121 LAASNGKYVDLCLDMLVNNFMPPMES-DMLRHPRGQAKKDQVLPRVHTGLEVIVDLVPLA 179
Query: 174 PTRLLPIVVQRMPTVHNKH---ERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLI 230
+L VVQ+ P K +RLK +Y++N L LE A+ E V ++L+ VV+ ++
Sbjct: 180 ALKLSTNVVQKRPMFFRKDFNMDRLK-CRIYLKNMLMLEGGAIREFVGHSMLVEVVNMML 238
Query: 231 DLDMEIGWDDILHDDFSKGIFEMELEDVEEAADDAEQVGD-ELPSGSLSRKSLSGNLIAE 289
+LD+ IGWD++L DD SKGIF MELED EE A D Q D ELPS +L+ ++L N+ A+
Sbjct: 239 ELDVAIGWDELLRDDPSKGIFTMELEDEEEEAGDDGQANDGELPS-TLTLRNLGKNVTAD 297
Query: 290 LLDSLMVLTFEHLESCEGTGRLIE-----------------------FVMFYACALDPEN 326
LLDSLM+ EHLE+C RL E F +FYACALDPEN
Sbjct: 298 LLDSLMIQFLEHLEACADKKRLSEVFETLLSSFMATILNTYKSKFSQFTIFYACALDPEN 357
Query: 327 CGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYC 386
CG++FA L D+F+S PP+TRMSAV+YL+S+L+R +FLS F++++LKRLVDWCL YC
Sbjct: 358 CGVKFAQTLVDLFISTCNPPVTRMSAVAYLSSYLARGKFLSAAFVMNMLKRLVDWCLRYC 417
Query: 387 NILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLK 446
D+NPKAH+VFYS CQ IMYVLCF M+SIM++P LKSQLLLMP+E +LKH L PL+
Sbjct: 418 EEQDSDMNPKAHQVFYSACQGIMYVLCFHMKSIMNVPTLKSQLLLMPIEPILKHKLGPLE 477
Query: 447 VCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKS 506
VCLPS+V+EFL+Q+KAA LFT+S+ F+F DLLES+LSR FGGLERLDMFFPFDPCLLKK
Sbjct: 478 VCLPSIVNEFLKQAKAAHLFTISKAFIFEDLLESDLSRDFGGLERLDMFFPFDPCLLKKC 537
Query: 507 DR 508
DR
Sbjct: 538 DR 539
>gi|297826945|ref|XP_002881355.1| RNA polymerase I specific transcription initiation factor RRN3
family protein [Arabidopsis lyrata subsp. lyrata]
gi|297327194|gb|EFH57614.1| RNA polymerase I specific transcription initiation factor RRN3
family protein [Arabidopsis lyrata subsp. lyrata]
Length = 614
Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust.
Identities = 286/520 (55%), Positives = 376/520 (72%), Gaps = 33/520 (6%)
Query: 15 MEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMH--LSGRLDPDNRALLETSLKAL 72
+++V++SD +LV VR ALTSV++GD D Y++LV V++ + DPD A LET LKAL
Sbjct: 19 VDNVDLSDTDLVQTVRNALTSVKTGDPDLYSELVGVINKDIKEFRDPDAVAQLETVLKAL 78
Query: 73 SGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSN 132
SG+V+ IDI HH+ LL S+FGM +W++ P VMDAL L+ISLA + GKY+D CL MLVSN
Sbjct: 79 SGSVACIDIVHHQKLLSSLFGMKLWDHRPVVMDALVNLVISLAVTRGKYLDPCLNMLVSN 138
Query: 133 FTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKH 192
F PP ++ L P L +K +VLSRVHAAL I LVPL P+RL+P++ Q MP +H K
Sbjct: 139 FVPPPSVVNNLSHPRVLNKKIEVLSRVHAALLKISILVPLTPSRLVPMLFQEMPKIHKKD 198
Query: 193 ERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFE 252
IV+Y+E+ LKLE+S +G++ S +L V++RL DLD+EIGWDDI DD S+G+F+
Sbjct: 199 HS---IVIYVESLLKLENSPIGQVGGSMILGVVMERLRDLDLEIGWDDIPQDDSSRGMFD 255
Query: 253 MELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRL- 311
MELED E + GDELP G L + + G+++++LLD LMV+ FEHLESC+ GRL
Sbjct: 256 MELEDAVEGTINE---GDELPVGPLKQDTSDGSVVSKLLDKLMVVAFEHLESCQNDGRLD 312
Query: 312 ----------------------IEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTR 349
+F+MFYAC+LDPENCG++FA+ L ++F+S P TR
Sbjct: 313 QVFDILLESFENFILNTYKSKFTQFLMFYACSLDPENCGVKFASKLVEIFLSSNKHPSTR 372
Query: 350 MSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKAHRVFYSGCQAIM 409
MSAV+YLASFL+R +FL F+ S+LKRL+D C+ YC DI P+ H++F+SGCQAIM
Sbjct: 373 MSAVAYLASFLARGKFLPVSFVASMLKRLIDECVGYCRTCNDDIRPEEHQIFFSGCQAIM 432
Query: 410 YVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVS 469
YVLCFRMRSI+D+PR +SQ L PLE++L H LNPL+VCLPSVV+EFL+Q+KA LF VS
Sbjct: 433 YVLCFRMRSILDVPRFRSQ--LTPLESILMHKLNPLRVCLPSVVAEFLRQAKAGGLFIVS 490
Query: 470 ETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
++F+F+DLLESELSRAFGG ERLD FFPFDPCLLK S+ F
Sbjct: 491 DSFIFDDLLESELSRAFGGCERLDTFFPFDPCLLKTSNSF 530
>gi|30686199|ref|NP_850236.1| RNA polymerase I specific transcription initiation factor RRN3
protein [Arabidopsis thaliana]
gi|20465617|gb|AAM20140.1| unknown protein [Arabidopsis thaliana]
gi|23296957|gb|AAN13210.1| unknown protein [Arabidopsis thaliana]
gi|330253924|gb|AEC09018.1| RNA polymerase I specific transcription initiation factor RRN3
protein [Arabidopsis thaliana]
Length = 613
Score = 559 bits (1441), Expect = e-156, Method: Compositional matrix adjust.
Identities = 282/520 (54%), Positives = 377/520 (72%), Gaps = 33/520 (6%)
Query: 15 MEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVM--HLSGRLDPDNRALLETSLKAL 72
+++V++SD +LV VR+ALTSV++GD+D Y+++V VM + DPD A LET LKAL
Sbjct: 20 VDNVDLSDTQLVQTVRKALTSVKTGDSDLYSEMVGVMARDIKEFKDPDVVAQLETVLKAL 79
Query: 73 SGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSN 132
SGAV+ ID+ HH+ LL ++F M +W++ PDVMDAL L+ISLA ++GKY+DSCL MLVSN
Sbjct: 80 SGAVACIDVLHHQKLLSALFRMKLWDHRPDVMDALVNLVISLAVTSGKYLDSCLNMLVSN 139
Query: 133 FTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKH 192
F PP + ++ L L +K VLSRVHAAL I LVPL P+RL+P++ Q+MP +H K
Sbjct: 140 FVPPPWVVNNLSHSRILNKKIDVLSRVHAALLKISILVPLTPSRLVPMLFQQMPKMHKKD 199
Query: 193 ERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFE 252
IV+Y+E+ LKLE+S++G++ S +L V++RL DLD+EI WDDI DD S+G+F+
Sbjct: 200 HS---IVIYVESLLKLENSSIGQVGGSMILGMVMERLRDLDLEIEWDDIPQDDSSRGMFD 256
Query: 253 MELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRL- 311
MELED AA+ GDELP G L + + G+++++LLD LMV+ FEHLESC+ GRL
Sbjct: 257 MELED---AAEGTMNDGDELPVGPLKQDTSDGSIVSKLLDKLMVVAFEHLESCQNDGRLD 313
Query: 312 ----------------------IEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTR 349
+F++FYAC+LDPENCG++FA+ L ++F+S TR
Sbjct: 314 QVFESLFKSFENFILNTYKSKFTQFLIFYACSLDPENCGVKFASKLVEIFLSSNKHVATR 373
Query: 350 MSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKAHRVFYSGCQAIM 409
MSAV+YLASFL+R +FL F+ S+LKRL+D C+ YC D P+AH++F+SGCQAIM
Sbjct: 374 MSAVAYLASFLARGKFLPVSFVASMLKRLIDECVGYCRTCNDDTRPEAHQIFFSGCQAIM 433
Query: 410 YVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVS 469
YVLCFRMRSI+D+PR +SQ L PLE++L H LNPL VCLPSVV+EFL+Q+K LF VS
Sbjct: 434 YVLCFRMRSILDVPRFRSQ--LTPLESILMHKLNPLMVCLPSVVAEFLRQAKEGGLFIVS 491
Query: 470 ETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
++F+F+DLLESELSRAFGG ERLD FFPFDPCLLK S+ F
Sbjct: 492 DSFIFDDLLESELSRAFGGFERLDTFFPFDPCLLKSSNSF 531
>gi|297851508|ref|XP_002893635.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297339477|gb|EFH69894.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 610
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 286/533 (53%), Positives = 377/533 (70%), Gaps = 33/533 (6%)
Query: 1 MGVE-LPIDHAESHEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDP 59
MG E +P S+ M++ + +D ELV+ VR+AL SVQ+GD D+Y+QL VM D
Sbjct: 1 MGAEEVPSVPFSSNAMDNADYTDTELVHAVRKALASVQNGDTDDYSQLKTVMCHKDYSDF 60
Query: 60 DNRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNG 119
D A +T L+ LS +V+ ID+ HHE LL +IFGMS+W P+VMDAL GLIISLA +G
Sbjct: 61 DAVANYDTVLRILSVSVACIDVVHHEDLLRTIFGMSLWFQKPNVMDALVGLIISLAVISG 120
Query: 120 KYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLP 179
KY+D CL ML+SNF P+ F ++ + +++K +VL RVH AL I L+PLAP++L+P
Sbjct: 121 KYLDPCLNMLISNFIQPN-FKHEVSQTQLVKKKQEVLPRVHVALHKISYLIPLAPSKLVP 179
Query: 180 IVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWD 239
I+ Q MP+++ E+ +V Y++N LKLE+S++G++V S +LM V++R+ DLD+EIG D
Sbjct: 180 ILAQNMPSIY---EKGPSVVTYVDNLLKLENSSIGKVVGSVILMMVMERMRDLDLEIGCD 236
Query: 240 DILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTF 299
DIL DD ++G+F+MELED E+ + GDE P G L + + GN+++ELLD LMVL F
Sbjct: 237 DILQDDSNRGMFDMELEDAVESTMNE---GDEFPVGDLKQNTSGGNVVSELLDKLMVLFF 293
Query: 300 EHLESCEGTGRLIE-----------------------FVMFYACALDPENCGLRFATMLA 336
+HLESC+ +GRL E F+MFYAC+LDPE CG+RFA+ L
Sbjct: 294 DHLESCQNSGRLDEVFEILFQSFENYILNTYRSKFSQFLMFYACSLDPEYCGVRFASKLL 353
Query: 337 DVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPK 396
D+++S P LTRMSAV+YLAS+LSR +FL F+ S+LKRLVD C EYC D+ P+
Sbjct: 354 DIYLSRNKPRLTRMSAVAYLASYLSRGKFLPASFVASMLKRLVDDCAEYCKTCNDDVKPE 413
Query: 397 AHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEF 456
AH+VFYSGCQAI+YVLCF+MRSI+DIPR QL L LE++L H LNPL VCLPSVVSEF
Sbjct: 414 AHQVFYSGCQAILYVLCFQMRSILDIPRF--QLQLTSLESILSHKLNPLMVCLPSVVSEF 471
Query: 457 LQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
L+Q+KA LF VSE F+F+DL ESELSRAFGG ERLD FFPFDPCLLK S +
Sbjct: 472 LKQAKAGGLFIVSEAFIFDDLHESELSRAFGGFERLDTFFPFDPCLLKMSSSY 524
>gi|15221445|ref|NP_174347.1| RNA polymerase I specific transcription initiation factor RRN3
protein [Arabidopsis thaliana]
gi|332193126|gb|AEE31247.1| RNA polymerase I specific transcription initiation factor RRN3
protein [Arabidopsis thaliana]
Length = 604
Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust.
Identities = 276/535 (51%), Positives = 364/535 (68%), Gaps = 43/535 (8%)
Query: 1 MGVE-LPIDHAESHEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDP 59
MG E P S+ M++ +D +LV+ VR+AL SVQ+GD D+Y+QL VM L+ D
Sbjct: 1 MGAEEFPSVPFNSNAMDNAEYTDTDLVFAVRKALASVQNGDTDDYSQLKTVMCLTEDADF 60
Query: 60 DNRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMW--NYDPDVMDALKGLIISLAAS 117
D A LET LK+LS +V++ID+ HH+ LL + MS+W ++ P VMDAL LIISLAA+
Sbjct: 61 DAVAQLETVLKSLSVSVAWIDLVHHKDLLEA---MSLWYHSHRPSVMDALVDLIISLAAT 117
Query: 118 NGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRL 177
+GKY+D CL MLV NF+ P+ F K+ + +++ +V RVHAAL I L+PLAP L
Sbjct: 118 SGKYLDPCLNMLVRNFSQPT-FKHKVSQTQLVKKMQEVHPRVHAALHKISYLIPLAPWNL 176
Query: 178 LPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIG 237
+ I+ Q M + K IV Y++N L+LE+S++GE+V S +LM V++R++DLD+ G
Sbjct: 177 VSILAQNMRKIDKKDPS---IVTYVDNLLRLENSSIGEVVGSVILMMVMERMLDLDLVSG 233
Query: 238 WDDILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVL 297
DD + G+F+MELED A + GDE P G+L + + GN+++ELLD LMVL
Sbjct: 234 CDDS-----NGGMFDMELED---AVESTMNEGDEFPVGALKQNTSGGNVVSELLDKLMVL 285
Query: 298 TFEHLESCEGTGRLIE-----------------------FVMFYACALDPENCGLRFATM 334
F HLESC+ + RL E F+MFYAC+LDPENCG+RFA+
Sbjct: 286 FFHHLESCQNSDRLDEVFEILFKSFENYILNTYKTKFSQFLMFYACSLDPENCGVRFASK 345
Query: 335 LADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDIN 394
L D+++S LTRMSAV+YLAS+LSR +FL F+ S+LKRLVD C EYC D+
Sbjct: 346 LLDIYLSSNTCRLTRMSAVAYLASYLSRGKFLPASFVASMLKRLVDECAEYCGTCNDDVK 405
Query: 395 PKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVS 454
P+AH+VFYSGCQAI+YVLCFRMRSI++IPR +SQ LE++L H LNPL VCLPSVVS
Sbjct: 406 PEAHQVFYSGCQAILYVLCFRMRSIVEIPRFQSQ--FRSLESILSHKLNPLLVCLPSVVS 463
Query: 455 EFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
EFL+Q+KA LF VSE+F+F+DL ESELSRAFGG ERLD FFPFDPCLLK S +
Sbjct: 464 EFLKQAKAGGLFIVSESFIFDDLHESELSRAFGGFERLDTFFPFDPCLLKMSSSY 518
>gi|3132470|gb|AAC16259.1| unknown protein [Arabidopsis thaliana]
Length = 602
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 265/532 (49%), Positives = 358/532 (67%), Gaps = 68/532 (12%)
Query: 15 MEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVM--HLSGRLDPDNRALLETSLKAL 72
+++V++SD +LV VR+ALTSV++GD+D Y+++V VM + DPD A LET LKAL
Sbjct: 20 VDNVDLSDTQLVQTVRKALTSVKTGDSDLYSEMVGVMARDIKEFKDPDVVAQLETVLKAL 79
Query: 73 SGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSN 132
SGAV+ ID+ HH+ LL ++F M +W++ PDVMDAL L+ISLA ++GKY+DSCL MLVSN
Sbjct: 80 SGAVACIDVLHHQKLLSALFRMKLWDHRPDVMDALVNLVISLAVTSGKYLDSCLNMLVSN 139
Query: 133 FTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKH 192
F PP + ++ L L +K VLSRVHAAL I LVPL P+RL+P++ Q+MP +H K
Sbjct: 140 FVPPPWVVNNLSHSRILNKKIDVLSRVHAALLKISILVPLTPSRLVPMLFQQMPKMHKKD 199
Query: 193 ERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLD------------MEIGWDD 240
IV+Y+E+ LKLE+S++G++ S +L V++RL DLD +EI WDD
Sbjct: 200 HS---IVIYVESLLKLENSSIGQVGGSMILGMVMERLRDLDVSRQNMLIQLRSLEIEWDD 256
Query: 241 ILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFE 300
I DD S+G+F+MELED AA+ GDELP G L + + G+++++LLD LMV+ FE
Sbjct: 257 IPQDDSSRGMFDMELED---AAEGTMNDGDELPVGPLKQDTSDGSIVSKLLDKLMVVAFE 313
Query: 301 HLESCEGTGRL-----------------------IEFVMFYACALDPENCGLRFATMLAD 337
HLESC+ GRL +F++FYAC+LDPENCG++FA+ L +
Sbjct: 314 HLESCQNDGRLDQVFESLFKSFENFILNTYKSKFTQFLIFYACSLDPENCGVKFASKLVE 373
Query: 338 VFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA 397
+F+S TR +++ RL+D C+ YC D P+A
Sbjct: 374 IFLSSNKHVATRQASL-----------------------RLIDECVGYCRTCNDDTRPEA 410
Query: 398 HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFL 457
H++F+SGCQAIMYVLCFRMRSI+D+PR +SQ L PLE++L H LNPL VCLPSVV+EFL
Sbjct: 411 HQIFFSGCQAIMYVLCFRMRSILDVPRFRSQ--LTPLESILMHKLNPLMVCLPSVVAEFL 468
Query: 458 QQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
+Q+K LF VS++F+F+DLLESELSRAFGG ERLD FFPFDPCLLK S+ F
Sbjct: 469 RQAKEGGLFIVSDSFIFDDLLESELSRAFGGFERLDTFFPFDPCLLKSSNSF 520
>gi|4587515|gb|AAD25746.1|AC007060_4 EST gb|Z37678 comes from this gene [Arabidopsis thaliana]
Length = 622
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 276/553 (49%), Positives = 364/553 (65%), Gaps = 61/553 (11%)
Query: 1 MGVE-LPIDHAESHEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDP 59
MG E P S+ M++ +D +LV+ VR+AL SVQ+GD D+Y+QL VM L+ D
Sbjct: 1 MGAEEFPSVPFNSNAMDNAEYTDTDLVFAVRKALASVQNGDTDDYSQLKTVMCLTEDADF 60
Query: 60 DNRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMW--NYDPDVMDALKGLIISL--- 114
D A LET LK+LS +V++ID+ HH+ LL + MS+W ++ P VMDAL LIISL
Sbjct: 61 DAVAQLETVLKSLSVSVAWIDLVHHKDLLEA---MSLWYHSHRPSVMDALVDLIISLRIT 117
Query: 115 ----------AASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALK 164
AA++GKY+D CL MLV NF+ P+ F K+ + +++ +V RVHAAL
Sbjct: 118 FCVFVVSHHEAATSGKYLDPCLNMLVRNFSQPT-FKHKVSQTQLVKKMQEVHPRVHAALH 176
Query: 165 SIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMA 224
I L+PLAP L+ I+ Q M + K IV Y++N L+LE+S++GE+V S +LM
Sbjct: 177 KISYLIPLAPWNLVSILAQNMRKIDKKDPS---IVTYVDNLLRLENSSIGEVVGSVILMM 233
Query: 225 VVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSG 284
V++R++DLD+ G DD + G+F+MELED A + GDE P G+L + + G
Sbjct: 234 VMERMLDLDLVSGCDDS-----NGGMFDMELED---AVESTMNEGDEFPVGALKQNTSGG 285
Query: 285 NLIAELLDSLMVLTFEHLESCEGTGRLIE----------------------------FVM 316
N+++ELLD LMVL F HLESC+ + RL E F+M
Sbjct: 286 NVVSELLDKLMVLFFHHLESCQNSDRLDEVWHQMVFEILFKSFENYILNTYKTKFSQFLM 345
Query: 317 FYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLK 376
FYAC+LDPENCG+RFA+ L D+++S LTRMSAV+YLAS+LSR +FL F+ S+LK
Sbjct: 346 FYACSLDPENCGVRFASKLLDIYLSSNTCRLTRMSAVAYLASYLSRGKFLPASFVASMLK 405
Query: 377 RLVDWCLEYCNILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLET 436
RLVD C EYC D+ P+AH+VFYSGCQAI+YVLCFRMRSI++IPR +SQ LE+
Sbjct: 406 RLVDECAEYCGTCNDDVKPEAHQVFYSGCQAILYVLCFRMRSIVEIPRFQSQ--FRSLES 463
Query: 437 VLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFF 496
+L H LNPL VCLPSVVSEFL+Q+KA LF VSE+F+F+DL ESELSRAFGG ERLD FF
Sbjct: 464 ILSHKLNPLLVCLPSVVSEFLKQAKAGGLFIVSESFIFDDLHESELSRAFGGFERLDTFF 523
Query: 497 PFDPCLLKKSDRF 509
PFDPCLLK S +
Sbjct: 524 PFDPCLLKMSSSY 536
>gi|297823681|ref|XP_002879723.1| hypothetical protein ARALYDRAFT_902994 [Arabidopsis lyrata subsp.
lyrata]
gi|297325562|gb|EFH55982.1| hypothetical protein ARALYDRAFT_902994 [Arabidopsis lyrata subsp.
lyrata]
Length = 494
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 253/530 (47%), Positives = 349/530 (65%), Gaps = 79/530 (14%)
Query: 12 SHEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRALLETSLKA 71
+ E+++ +SD LV +R+ALTS QS T LK
Sbjct: 3 AKEVDNAELSDKALVVAIRKALTSAQS----------------------------TLLKI 34
Query: 72 LSGAVSYIDISHHESLLVSIFGMSMWNYDPDV--MDALKGLIISLAASNGKYVDSCLTML 129
LS +V+ +D HH+ LL IFG ++W++ P+V M AL LI+SLA ++GK++ SCL ML
Sbjct: 35 LSRSVACLDEVHHKVLLDRIFGTTIWDHKPNVNVMYALLDLIVSLATTSGKHLSSCLNML 94
Query: 130 VSNFTPPSYFLDKLKEPHGLERKH-QVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTV 188
VSN L +P L+ K ++LSRVHAAL I LVPLAP+ LLPI+ Q +P+V
Sbjct: 95 VSNL---------LSQPRILDNKMLELLSRVHAALHKISFLVPLAPSILLPILAQSLPSV 145
Query: 189 HNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSK 248
H+K +R +++V Y+EN L+LE+S++G++ + +L V++RL+DLD+EIGWDDIL DD +
Sbjct: 146 HDK-DRFQLVVPYVENLLQLENSSIGKVFGNVILRVVMERLLDLDLEIGWDDILQDDSAI 204
Query: 249 GIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGT 308
+F+MEL+ E + G+E P SL++ +GN +++LLD LMVL F+HL+SC+ +
Sbjct: 205 AMFDMELDLAVEGTTNE---GEEFPVRSLNQ---NGNAVSDLLDDLMVLYFDHLKSCQDS 258
Query: 309 GRLIE-----------------------FVMFYACALDPENCGLRFATMLADVFV-SGLY 344
GRL E F+MFYAC+LDPENCG++FA+ L D+F+ S
Sbjct: 259 GRLDEVFENLFESFVNLILNAQKTKISQFLMFYACSLDPENCGVKFASKLLDIFLNSNNN 318
Query: 345 PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKAHRVFYSG 404
+TR +AV+YLAS+L+RA+FL F+ S+LKRLVD C +YC D P+ H+VFYS
Sbjct: 319 NQVTRTNAVAYLASYLARAKFLPASFVASMLKRLVDECADYCRTCNDDARPEEHQVFYSV 378
Query: 405 CQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAAR 464
CQAI+Y+LCFRMRSI+D+PR +SQ + PLE+VL H L+PL+VCLPSVVSEFL Q+KA
Sbjct: 379 CQAILYLLCFRMRSILDVPRFRSQ--ITPLESVLSHKLDPLRVCLPSVVSEFLYQAKAGG 436
Query: 465 LFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRFANATL 514
LF VS+ F+F+DL ESELSRA GG FFPFDPCLLKK++RF TL
Sbjct: 437 LFIVSDAFIFDDLPESELSRALGG------FFPFDPCLLKKTNRFTILTL 480
>gi|218198785|gb|EEC81212.1| hypothetical protein OsI_24246 [Oryza sativa Indica Group]
Length = 622
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 250/540 (46%), Positives = 338/540 (62%), Gaps = 43/540 (7%)
Query: 1 MGVELPIDHAESHEMEDVNISD-LELVYHVREALT----SVQSGDNDNYNQLVAVMHLSG 55
MG EL D E E ED++ S V HV +++ V D + Y+ L++++ S
Sbjct: 1 MGAELRRDDMEVAE-EDISDSQAFRFVEHVLQSVRMDPFQVDLRDKEEYDSLLSIVDSSK 59
Query: 56 RLDPDNRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLA 115
+ D+ ALL T+LKALS AVS IDI +H +LL +IF MS+W + D DAL LI LA
Sbjct: 60 KRSYDDEALLVTTLKALSEAVSKIDIMYHHALLNNIFTMSIWYLNSDTRDALLSLITRLA 119
Query: 116 ASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPT 175
A +++ CL MLV+NFTPP + +P L RK ++ S++H +L+ I D VPLAP
Sbjct: 120 AVADQFLRECLQMLVNNFTPPGSLTAFIGQPRWLARKKEIYSQLHESLRMISDTVPLAPR 179
Query: 176 RLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDME 235
L I+ + MP + + ++ V ++E L L++ MG+L+ + LL VVD L +LD+
Sbjct: 180 MLKDIIDRSMPKLFDNKAKM---VSFVECMLGLDNDRMGDLIGALLLAKVVDLLTELDVN 236
Query: 236 IGWDDILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLM 295
I W+DIL D+ +KGIF+MELED+ E D Q G ++ GN AE LD LM
Sbjct: 237 ITWEDILQDEHNKGIFDMELEDLGEDEDSLGQEG--------TKALFGGNACAEKLDGLM 288
Query: 296 VLTFEHLESCEGTGRL-----------------------IEFVMFYACALDPENCGLRFA 332
V+ EHL+SC+ GRL +F+MFYAC+LDPE CGL FA
Sbjct: 289 VVFCEHLKSCKEHGRLPQEFDILKTIFRASVLRVHKSKFAQFIMFYACSLDPEICGLEFA 348
Query: 333 TMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYC---NIL 389
L+D+F+ ++RMSAVSY+ S+LSRARF+S +V +LKRLVDWC++YC N +
Sbjct: 349 LFLSDIFIKKEEDSISRMSAVSYVGSYLSRARFISADTVVGILKRLVDWCVDYCDLQNNI 408
Query: 390 GGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCL 449
G P H++FY+ CQA+MY+LCFR+RSIMD P LK+QL MP +L H L PLKVCL
Sbjct: 409 GITTKPINHQIFYASCQAVMYILCFRLRSIMDYPNLKAQLFNMPFGYILTHPLEPLKVCL 468
Query: 450 PSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
PS+V EFL+Q+KAARLF S F D LES+LS+ FGG+ RLDMFFPFDP LLK+SDR+
Sbjct: 469 PSIVDEFLRQAKAARLFNASVHSEFEDALESDLSKTFGGMNRLDMFFPFDPYLLKESDRY 528
>gi|297606399|ref|NP_001058413.2| Os06g0688100 [Oryza sativa Japonica Group]
gi|52076695|dbj|BAD45608.1| putative RNA polymerase I transcription factor RRN3 [Oryza sativa
Japonica Group]
gi|52077031|dbj|BAD46064.1| putative RNA polymerase I transcription factor RRN3 [Oryza sativa
Japonica Group]
gi|215704896|dbj|BAG94924.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222636116|gb|EEE66248.1| hypothetical protein OsJ_22429 [Oryza sativa Japonica Group]
gi|255677342|dbj|BAF20327.2| Os06g0688100 [Oryza sativa Japonica Group]
Length = 622
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 248/540 (45%), Positives = 337/540 (62%), Gaps = 43/540 (7%)
Query: 1 MGVELPIDHAESHEMEDVNISD-LELVYHVREALT----SVQSGDNDNYNQLVAVMHLSG 55
MG EL D E E ED++ S V HV +++ V D + Y+ L++++ S
Sbjct: 1 MGAELRRDDMEVAE-EDISDSQAFRFVEHVLQSVRMDPFQVDLRDKEEYDSLLSIVDSSK 59
Query: 56 RLDPDNRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLA 115
+ D+ ALL T+LKALS AVS IDI +H +LL +IF MS+W + D DAL LI LA
Sbjct: 60 KRSYDDEALLVTTLKALSEAVSKIDIMYHHALLNNIFTMSIWYLNSDTRDALLSLITRLA 119
Query: 116 ASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPT 175
A +++ CL MLV+NFTPP + +P L RK ++ S++H +L+ I D VPLAP
Sbjct: 120 AVADQFLRECLQMLVNNFTPPGSLTAFIGQPRWLARKKEIYSQLHESLRMISDTVPLAPR 179
Query: 176 RLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDME 235
L I+ + MP + + ++ V ++E L L++ MG+L+ + LL VVD L +LD+
Sbjct: 180 MLKDIIDRSMPKLFDNKAKM---VSFVECMLGLDNDRMGDLIGALLLAKVVDLLTELDVN 236
Query: 236 IGWDDILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLM 295
I W+DIL D+ +KGIF+MELED+ E D Q G ++ GN AE LD LM
Sbjct: 237 ITWEDILQDEHNKGIFDMELEDLGEDEDSLGQEG--------TKALFGGNACAEKLDGLM 288
Query: 296 VLTFEHLESCEGTGRL-----------------------IEFVMFYACALDPENCGLRFA 332
V+ EHL+SC+ GRL +F+MFYAC+LDPE CGL FA
Sbjct: 289 VVFCEHLKSCKEHGRLPQEFDILKTIFRASVLRVHKSKFAQFIMFYACSLDPEICGLEFA 348
Query: 333 TMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGG- 391
L+D+F+ ++RMSAVSY+ S+LSRARF+S +V +LKRLVDWC++YC++
Sbjct: 349 LFLSDIFIKKEEDSISRMSAVSYVGSYLSRARFISADTVVGILKRLVDWCVDYCDLQNNI 408
Query: 392 --DINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCL 449
P H++FY+ CQA+MY+LCFR+RSIMD P LK+QL MP +L H L PLKVCL
Sbjct: 409 RITTKPINHQIFYASCQAVMYILCFRLRSIMDYPNLKAQLFNMPFGYILTHPLEPLKVCL 468
Query: 450 PSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
PS+V EFL+Q+KAARLF S F D LES+LS+ FGG+ RLDMFFPFDP LLK+SDR+
Sbjct: 469 PSIVDEFLRQAKAARLFNASVHSEFEDALESDLSKTFGGMNRLDMFFPFDPYLLKESDRY 528
>gi|145360786|ref|NP_181457.2| RNA polymerase I specific transcription initiation factor RRN3
protein [Arabidopsis thaliana]
gi|91806331|gb|ABE65893.1| RNA polymerase I specific transcription initiation factor RRN3
family protein [Arabidopsis thaliana]
gi|330254555|gb|AEC09649.1| RNA polymerase I specific transcription initiation factor RRN3
protein [Arabidopsis thaliana]
Length = 573
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 253/534 (47%), Positives = 334/534 (62%), Gaps = 80/534 (14%)
Query: 12 SHEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRL-------------D 58
+ E+E ++SD LV +RE L S QSGD D YN+LV +M++ + D
Sbjct: 3 AEEVETADLSDKALVSAIREVLASAQSGDTDQYNELVQLMYIKKKKSGDDAMAQPEVPDD 62
Query: 59 PDNRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASN 118
D A ET LK LS +V+ +D HH LL I G +W++ P+V+ AL LIISLA ++
Sbjct: 63 VDVVAQRETLLKILSHSVACLDDVHHNHLLQLILGTRIWDHKPNVIYALLDLIISLATTS 122
Query: 119 GKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKH-QVLSRVHAALKSIFDLVPLAPTRL 177
GK++ SCL LVSN +P L+ K +VLSRVHAAL I LVPLAP+ L
Sbjct: 123 GKHLSSCLDTLVSNLR---------SQPRKLDNKMLEVLSRVHAALHKISYLVPLAPSIL 173
Query: 178 LPIVVQRMPTVHNKHERLKMIVVYMENTLKLE-SSAMGELVRSTLLMAVVDRLIDLDMEI 236
LPI+ Q MP+VH+K RL+++V Y++N LKLE SS +G++V +LM V+ R DLD EI
Sbjct: 174 LPILAQSMPSVHDK-ARLQVVVPYVKNLLKLENSSIIGKVVGKDILMMVMGRFRDLDSEI 232
Query: 237 GWDDILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMV 296
DD L +D S +F+MEL DV ++ G L+++LLD LMV
Sbjct: 233 ECDDNLQNDSSLAMFDMEL-DV----------------------AVEGTLVSKLLDDLMV 269
Query: 297 LTFEHLESCEGTGRLIE-----------------------FVMFYACALDPENCGLRFAT 333
+F HL+SC+ GRL E F+MFYAC+LDPENCG++FA+
Sbjct: 270 ESFNHLKSCQDAGRLDEVFENLFESFENLILNTQKLKFSQFLMFYACSLDPENCGVKFAS 329
Query: 334 MLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDI 393
L + F+S +TR +AV+YLAS+L+RA FLS F+ S+LKRLVD C +YC D
Sbjct: 330 KLLEKFLSSNNNQVTRTNAVTYLASYLARANFLSASFVASMLKRLVDECADYCRTCNDDA 389
Query: 394 NPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVV 453
P+ H+VFYSGCQAI+YVLCFRMRSI+++P +SQ L PLE+VL H L+PL+VCL SVV
Sbjct: 390 RPEVHQVFYSGCQAILYVLCFRMRSILEVPHFQSQ--LTPLESVLSHKLDPLRVCLSSVV 447
Query: 454 SEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSD 507
SEFL Q+KA LF VS+ F+F+DL ESELSRA GG FFPF P LL+KS+
Sbjct: 448 SEFLIQAKACGLFIVSDAFIFDDLSESELSRALGG------FFPF-PWLLEKSN 494
>gi|357123514|ref|XP_003563455.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Brachypodium distachyon]
Length = 622
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 234/538 (43%), Positives = 328/538 (60%), Gaps = 40/538 (7%)
Query: 1 MGVELPIDHAESHEMEDVNISDLELVYHVREALTS----VQSGDNDNYNQLVAVMHLSGR 56
MG E D E+ + + +V HV ++++ V D + Y+ L+ ++ +
Sbjct: 1 MGAEQRRDDMETAADSISDTAAFRMVEHVLQSVSMDPFLVDPSDREQYDILLNILDAVKK 60
Query: 57 LDPDNRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAA 116
D+ ALL T+LKALS AVS ID+ +H LL +IFGM +W + D DA LI LAA
Sbjct: 61 RSLDDEALLVTTLKALSEAVSKIDMMYHYILLNNIFGMCIWFFQRDTRDAYLDLITRLAA 120
Query: 117 SNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTR 176
KY+ CL ++V+NFTPP + +++P + RK ++ ++H LK+I D VPLAP
Sbjct: 121 VADKYLRECLQVVVNNFTPPGPLVPYMEQPRWIARKKEIYFQLHECLKTISDTVPLAPRM 180
Query: 177 LLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEI 236
L I+ + MP + + ++ V ++E + L++ MG+L+ + LL VVD L +LD+ I
Sbjct: 181 LKDIIDRSMPKLFDNKAKM---VSFVECMMGLDTDRMGDLIGALLLAKVVDLLTELDVNI 237
Query: 237 GWDDILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMV 296
+DI ++ +KGIF+MELED++E D Q G ++ L GN AE LD LMV
Sbjct: 238 TLEDINQEEHNKGIFDMELEDLDEDEDGFGQEG--------TKVLLGGNACAEKLDGLMV 289
Query: 297 LTFEHLESCEGTG-----------------------RLIEFVMFYACALDPENCGLRFAT 333
+ EHL+SC G + +F+MFYAC+LDPE CGL FA
Sbjct: 290 VVCEHLKSCAEHGYLTKEFDTLKTIFRASLLRVHKSKFAQFIMFYACSLDPEICGLEFAI 349
Query: 334 MLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILG--G 391
L D F P++RMSAVSY+ S+LSRARF+S +V +LKRLV+WC+EYC++ G
Sbjct: 350 FLTDTFTKKEEDPISRMSAVSYVGSYLSRARFISADTVVGILKRLVEWCVEYCDLQNKRG 409
Query: 392 DINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPS 451
I H++FY+ CQA+MYVLCFR+RSIMD P LKS+L MP +L H L PLKVCLPS
Sbjct: 410 TIAKPNHQIFYATCQAVMYVLCFRLRSIMDYPNLKSELFHMPFGFLLTHPLEPLKVCLPS 469
Query: 452 VVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
+V+EFL+Q+K A LFT F D +ES+LSR FGG+ RLD+FFPFDP LLK+SDR+
Sbjct: 470 IVNEFLRQAKPAGLFTAFVDPAFEDAIESDLSRTFGGVNRLDVFFPFDPYLLKESDRY 527
>gi|297827511|ref|XP_002881638.1| hypothetical protein ARALYDRAFT_321615 [Arabidopsis lyrata subsp.
lyrata]
gi|297327477|gb|EFH57897.1| hypothetical protein ARALYDRAFT_321615 [Arabidopsis lyrata subsp.
lyrata]
Length = 584
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 242/524 (46%), Positives = 325/524 (62%), Gaps = 67/524 (12%)
Query: 13 HEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDP------------D 60
E+++V +SD LV +RE L SVQ + +M++ + D D
Sbjct: 5 EEVDNVELSDKALVLAIREVLASVQCVSLAQMETPINIMYIKKKSDGHAVAQKEVPEDVD 64
Query: 61 NRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDV--MDALKGLIISLAASN 118
A ET LK LS +V+ +D HH LLV I G +W++ P+V M AL LI+SLA ++
Sbjct: 65 VVAQRETLLKTLSRSVACLDEVHHNRLLVLILGTRIWDHIPNVNVMYALLDLIVSLATTS 124
Query: 119 GKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQ-VLSRVHAALKSIFDLVPLAPTRL 177
GKY+ SCL MLVSN +P L K Q VLSRVHAAL I LVPLAP+ L
Sbjct: 125 GKYLISCLNMLVSNLR---------SQPRILNNKEQEVLSRVHAALHKISYLVPLAPSIL 175
Query: 178 LPIVVQRMPTVHNKHERLKMIVVYMENTLKLE-SSAMGELVRSTLLMAVVDRLIDLDMEI 236
LPI+ Q MP+V +K ++V Y+EN LKLE SS +G++V + +L V++RL DLD++I
Sbjct: 176 LPILAQGMPSVDDKDH---LVVPYVENLLKLENSSIIGKVVGNGILRVVMERLRDLDLKI 232
Query: 237 GWDDILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMV 296
GWDDIL DD + +F+MEL+ E + G+E SL++ +GN++++ LD LMV
Sbjct: 233 GWDDILQDDSTIAMFDMELDLAVEGTTNE---GEEFSVRSLNQ---NGNVVSKSLDDLMV 286
Query: 297 LTFEHLESCEGTGRLIE-----------------------FVMFYACALDPENCGLRFAT 333
L+F HLE C+ GRL E F+MFYAC+LDP++CG++FA+
Sbjct: 287 LSFHHLEFCQDAGRLDEVFENLFVSFENLILNTQKTKISQFLMFYACSLDPKSCGVKFAS 346
Query: 334 MLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDI 393
L D+F+S +TR +AV+YLAS+L+RA+FL F+ S+LKRLVD C +YC D+
Sbjct: 347 KLLDIFLSSNKHQVTRTNAVAYLASYLARAKFLPTSFVASMLKRLVDECADYCRTCNDDV 406
Query: 394 NPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVV 453
P+ H+ FYSGCQAI+YVLCFRMRSI+ +PR SQ L PLE+V P VCLPSVV
Sbjct: 407 RPEEHQDFYSGCQAILYVLCFRMRSILAVPRFLSQ--LTPLESVFISQTRP--VCLPSVV 462
Query: 454 SEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFP 497
SEFL+Q+KA + VSE F+F+DL ESELSRAFGG FFP
Sbjct: 463 SEFLKQAKAGGMIIVSEAFIFDDLPESELSRAFGG------FFP 500
>gi|413934685|gb|AFW69236.1| hypothetical protein ZEAMMB73_457339 [Zea mays]
Length = 620
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 220/499 (44%), Positives = 305/499 (61%), Gaps = 42/499 (8%)
Query: 40 DNDNYNQLVAVMHLSGRLDPDNRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNY 99
D D Y+ ++ ++ + + D+ A+ T L+ALS AVS ID +H +LL +IF M +W+
Sbjct: 41 DKDYYDYMLGIIDPTKKRSTDDEAMFVTILRALSQAVSKIDTVYHHALLHNIFTMCVWHL 100
Query: 100 DPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRV 159
D LI LAA +Y+ CL MLV+NFTPP + ++EP L +K ++ S++
Sbjct: 101 HSDTRVVFLDLITRLAAVADQYLRECLQMLVNNFTPPGPLIRYIEEPRWLPKKEKIYSQL 160
Query: 160 HAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRS 219
+LK I D VPLAP L I+ + MP + + ++ V +++ L L++ + +++ S
Sbjct: 161 QESLKMISDTVPLAPRMLKDIIDRSMPKLFDSKAKM---VSFVKCMLGLDA-VVWDIIGS 216
Query: 220 TLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSR 279
+LL VV L +LD+ I W+DIL D+ +KGIF+MELED+ E D+ Q G ++ G
Sbjct: 217 SLLEKVVYLLTELDVNITWEDILQDEHNKGIFDMELEDLAEDEDNLGQEGTKVHFG---- 272
Query: 280 KSLSGNLIAELLDSLMVLTFEHLES-CEGTGRLI-----------------------EFV 315
GN+ AE LD LMV+ EHL+S E RLI +F+
Sbjct: 273 ----GNMCAEKLDGLMVVVCEHLKSRVEEPERLIKEFVTLKAIFKSHVLRVHKSKFAQFI 328
Query: 316 MFYACALDPENCGLRFATMLADVFVSGLY--PPLTRMSAVSYLASFLSRARFLSPCFIVS 373
MFYAC+L PE G FA L D+F+ +TR+SAVSY+ S+LSRARF+S +VS
Sbjct: 329 MFYACSLHPE-IGDGFANFLTDIFIDKDKNEDAITRVSAVSYVGSYLSRARFISVNIVVS 387
Query: 374 LLKRLVDWCLEYCNIL---GGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLL 430
+LKRLVDWC YC G NP H++FY+ CQA+MYVLCFR+RSIMD P LK QL
Sbjct: 388 VLKRLVDWCDYYCGHQLDNGVTANPIKHQLFYASCQAVMYVLCFRLRSIMDYPNLKQQLF 447
Query: 431 LMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLE 490
M + +L H L PLKVCLPS+V+EFL+Q+ AA LF + D +ES+LS+AFGGL
Sbjct: 448 RMRIRDILVHPLQPLKVCLPSIVNEFLRQATAASLFHAPAISMHEDAVESDLSKAFGGLN 507
Query: 491 RLDMFFPFDPCLLKKSDRF 509
RLDMFFPFDP LLK+SDR+
Sbjct: 508 RLDMFFPFDPYLLKESDRY 526
>gi|3402681|gb|AAC28984.1| unknown protein [Arabidopsis thaliana]
Length = 545
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 236/534 (44%), Positives = 311/534 (58%), Gaps = 108/534 (20%)
Query: 12 SHEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRL-------------D 58
+ E+E ++SD LV +RE L S QSGD D YN+LV +M++ + D
Sbjct: 3 AEEVETADLSDKALVSAIREVLASAQSGDTDQYNELVQLMYIKKKKSGDDAMAQPEVPDD 62
Query: 59 PDNRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASN 118
D A ET LK LS +V+ +D HH LL I G +W++ P+V+ AL LIISLA ++
Sbjct: 63 VDVVAQRETLLKILSHSVACLDDVHHNHLLQLILGTRIWDHKPNVIYALLDLIISLATTS 122
Query: 119 GKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKH-QVLSRVHAALKSIFDLVPLAPTRL 177
GK++ SCL LVSN +P L+ K +VLSRVHAAL I LVPLAP+ L
Sbjct: 123 GKHLSSCLDTLVSNLR---------SQPRKLDNKMLEVLSRVHAALHKISYLVPLAPSIL 173
Query: 178 LPIVVQRMPTVHNKHERLKMIVVYMENTLKLE-SSAMGELVRSTLLMAVVDRLIDLDMEI 236
LPI+ Q MP+VH+K RL+++V Y++N LKLE SS +G++V +LM V+ R DLD EI
Sbjct: 174 LPILAQSMPSVHDK-ARLQVVVPYVKNLLKLENSSIIGKVVGKDILMMVMGRFRDLDSEI 232
Query: 237 GWDDILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMV 296
DD L +D S +F+MEL DV ++ G L+++LLD LMV
Sbjct: 233 ECDDNLQNDSSLAMFDMEL-DV----------------------AVEGTLVSKLLDDLMV 269
Query: 297 LTFEHLESCEGTGRLIE-----------------------FVMFYACALDPENCGLRFAT 333
+F HL+SC+ GRL E F+MFYAC+LDPENCG++FA+
Sbjct: 270 ESFNHLKSCQDAGRLDEVFENLFESFENLILNTQKLKFSQFLMFYACSLDPENCGVKFAS 329
Query: 334 MLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDI 393
L + F+S +TR LVD C +YC D
Sbjct: 330 KLLEKFLSSNNNQVTR----------------------------LVDECADYCRTCNDDA 361
Query: 394 NPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVV 453
P+ H+VFYSGCQAI+YVLCFRMRSI+++P +SQL PLE+VL H L+PL+VCL SVV
Sbjct: 362 RPEVHQVFYSGCQAILYVLCFRMRSILEVPHFQSQL--TPLESVLSHKLDPLRVCLSSVV 419
Query: 454 SEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSD 507
SEFL Q+KA LF VS+ F+F+DL ESELSRA GG FFPF P LL+KS+
Sbjct: 420 SEFLIQAKACGLFIVSDAFIFDDLSESELSRALGG------FFPF-PWLLEKSN 466
>gi|110739953|dbj|BAF01881.1| hypothetical protein [Arabidopsis thaliana]
Length = 410
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 184/333 (55%), Positives = 243/333 (72%), Gaps = 28/333 (8%)
Query: 200 VYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVE 259
+Y+E+ LKLE+S++G++ S +L V++RL DLD+EI WDDI DD S+G+F+MELED
Sbjct: 1 IYVESLLKLENSSIGQVGGSMILGMVMERLRDLDLEIEWDDIPQDDSSRGMFDMELED-- 58
Query: 260 EAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRL-------- 311
AA+ GDELP G L + + G+++++LLD LMV+ FEHLESC+ GRL
Sbjct: 59 -AAEGTMNDGDELPVGPLKQDTSDGSIVSKLLDKLMVVAFEHLESCQNDGRLDQVFESLF 117
Query: 312 ---------------IEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYL 356
+F++FYAC+LDPENCG++FA+ L ++F+S TRMSAV+YL
Sbjct: 118 KSFENFILNTYKSKFTQFLIFYACSLDPENCGVKFASKLVEIFLSSNKHVATRMSAVAYL 177
Query: 357 ASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKAHRVFYSGCQAIMYVLCFRM 416
ASFL+R +FL F+ S+LKRL+D C+ YC D P+AH++F+SGCQAIMYVLCFRM
Sbjct: 178 ASFLARGKFLPVSFVASMLKRLIDECVGYCRTCNDDTRPEAHQIFFSGCQAIMYVLCFRM 237
Query: 417 RSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFND 476
RSI+D+PR +SQ L PLE++L H LNPL VCLPSVV+EFL+Q+K LF VS++F+F+D
Sbjct: 238 RSILDVPRFRSQ--LTPLESILMHKLNPLMVCLPSVVAEFLRQAKEGGLFIVSDSFIFDD 295
Query: 477 LLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
LLESELSRAFGG ERLD FFPFDPCLLK S+ F
Sbjct: 296 LLESELSRAFGGFERLDTFFPFDPCLLKSSNSF 328
>gi|413934684|gb|AFW69235.1| hypothetical protein ZEAMMB73_457339 [Zea mays]
Length = 592
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 202/497 (40%), Positives = 282/497 (56%), Gaps = 66/497 (13%)
Query: 40 DNDNYNQLVAVMHLSGRLDPDNRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNY 99
D D Y+ ++ ++ + + D+ A+ T L+ALS AVS ID +H +LL +IF M +W+
Sbjct: 41 DKDYYDYMLGIIDPTKKRSTDDEAMFVTILRALSQAVSKIDTVYHHALLHNIFTMCVWHL 100
Query: 100 DPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRV 159
D LI LAA +Y+ CL MLV+NFTPP + ++EP L +K ++ S++
Sbjct: 101 HSDTRVVFLDLITRLAAVADQYLRECLQMLVNNFTPPGPLIRYIEEPRWLPKKEKIYSQL 160
Query: 160 HAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRS 219
+LK I D VPLAP L I+ + MP + + ++ V +++ L L++ + +++ S
Sbjct: 161 QESLKMISDTVPLAPRMLKDIIDRSMPKLFDSKAKM---VSFVKCMLGLDA-VVWDIIGS 216
Query: 220 TLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSR 279
+LL VV L +LD+ I W+DIL D+ +KGIF+MELED+ E D+ Q G ++ G
Sbjct: 217 SLLEKVVYLLTELDVNITWEDILQDEHNKGIFDMELEDLAEDEDNLGQEGTKVHFG---- 272
Query: 280 KSLSGNLIAELLDSLMVLTFEHLES-CEGTGRLI-----------------------EFV 315
GN+ AE LD LMV+ EHL+S E RLI +F+
Sbjct: 273 ----GNMCAEKLDGLMVVVCEHLKSRVEEPERLIKEFVTLKAIFKSHVLRVHKSKFAQFI 328
Query: 316 MFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLL 375
MFYAC+L PE G FA L D+F+ A++
Sbjct: 329 MFYACSLHPE-IGDGFANFLTDIFIDKD----KNEDAIT--------------------- 362
Query: 376 KRLVDWCLEYCNIL---GGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLM 432
RLVDWC YC G NP H++FY+ CQA+MYVLCFR+RSIMD P LK QL M
Sbjct: 363 -RLVDWCDYYCGHQLDNGVTANPIKHQLFYASCQAVMYVLCFRLRSIMDYPNLKQQLFRM 421
Query: 433 PLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERL 492
+ +L H L PLKVCLPS+V+EFL+Q+ AA LF + D +ES+LS+AFGGL RL
Sbjct: 422 RIRDILVHPLQPLKVCLPSIVNEFLRQATAASLFHAPAISMHEDAVESDLSKAFGGLNRL 481
Query: 493 DMFFPFDPCLLKKSDRF 509
DMFFPFDP LLK+SDR+
Sbjct: 482 DMFFPFDPYLLKESDRY 498
>gi|242094004|ref|XP_002437492.1| hypothetical protein SORBIDRAFT_10g028030 [Sorghum bicolor]
gi|241915715|gb|EER88859.1| hypothetical protein SORBIDRAFT_10g028030 [Sorghum bicolor]
Length = 593
Score = 321 bits (822), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 208/543 (38%), Positives = 300/543 (55%), Gaps = 78/543 (14%)
Query: 1 MGVELPIDHAESHEMEDVNISDLELVYHVREALTSVQSGD-------NDNYNQLVAVMHL 53
MG E D E V + D ++ ++ E L +V+ Y+ L+ ++
Sbjct: 1 MGAEQGYDDME------VTLRDSDVFNYIVEVLQNVRMDPFLIDLRYKSQYDFLLDLVDP 54
Query: 54 SGRLDPDNRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIIS 113
+ + D A+ T+L+ALS AVS ID +H +LL +IF M +W + L LI
Sbjct: 55 TKKRTSDEEAMFATTLEALSEAVSTIDTMYHHALLHNIFTMCVWYLNSYTRVVLLDLITR 114
Query: 114 LAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLA 173
LAA +Y+ CL MLV+NFTPP + ++EP L +K ++ S++ +LK I D VPLA
Sbjct: 115 LAAVADQYLRECLQMLVNNFTPPGPLIRYIEEPRWLAKKEEIYSQLQESLKKISDTVPLA 174
Query: 174 PTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLD 233
P L I+ + MP + + ++ V ++E L L++ +++ +LL VV L +LD
Sbjct: 175 PRMLKDIIDRSMPKLFDSKAKM---VSFVECMLGLDADTW-DIIGPSLLEKVVYLLTELD 230
Query: 234 MEIGWDDILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDS 293
+ I W+DIL D+ +KGIF+MELED++E D+ Q G ++ G GN+ AE LD
Sbjct: 231 VNITWEDILQDEHNKGIFDMELEDLDEDEDNLGQEGTKVLFG--------GNVCAEKLDG 282
Query: 294 LMVLTFEHLES-CEGTGRL-----------------------IEFVMFYACALDPENCGL 329
LMV+ +HL+S E RL +F+MFYAC+L P+ CG
Sbjct: 283 LMVVVCKHLKSRAEEPDRLNKEFDTLKAIFKSHVIRVHKSKFAQFIMFYACSLYPKICGE 342
Query: 330 RFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNIL 389
FA L D+F+ + A++ RLV+WC +YC
Sbjct: 343 GFAFFLVDIFIDKD----KKEDAIT----------------------RLVEWCGDYCGSQ 376
Query: 390 ---GGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLK 446
G NP H++FY+ CQA+MYVLCFR+RSIMD P LK QL M ++ +L H L PLK
Sbjct: 377 LDKGVTANPIKHQLFYASCQAVMYVLCFRLRSIMDYPNLKLQLFQMRIQNILAHPLEPLK 436
Query: 447 VCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKS 506
VCLPS+V+EFL+Q+++A LF S D +ES+LS+AFGGL RLDMFFPFDP LLK+S
Sbjct: 437 VCLPSIVNEFLRQARSASLFHASVNSTHEDAVESDLSKAFGGLNRLDMFFPFDPYLLKES 496
Query: 507 DRF 509
DR+
Sbjct: 497 DRY 499
>gi|168045135|ref|XP_001775034.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673621|gb|EDQ60141.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 655
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 198/524 (37%), Positives = 294/524 (56%), Gaps = 59/524 (11%)
Query: 29 VREALTSVQSG-DNDNYNQLVAVMHLSGRLDPDNRA-LLETSLKALSGAVSYIDISHHES 86
V +AL S G D +YN L + RL D A L + ALS VSY++ H +
Sbjct: 8 VLKALKSGSDGVDKGHYNHLCEALR-DPRLHGDEGAPELAVRINALSQCVSYLNERAHRT 66
Query: 87 LLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPS----YFLDK 142
LL + GMS+W Y +V+DAL +++L+ +NG +V CL MLV NF PPS F D
Sbjct: 67 LLQYLLGMSVWTYSFEVVDALLAFVVNLSTANGCFVPDCLDMLVRNFLPPSCGLPSFFDS 126
Query: 143 LKEPH---GLERKHQVLS--RVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKM 197
GL ++ S R+H+AL +LVP A RL IVVQRMP H ++ +
Sbjct: 127 FSRTGLMMGLTTMDKLKSQERLHSALVQTVELVPTAAFRLQHIVVQRMP--HRTCDK-QW 183
Query: 198 IVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIF--EMEL 255
+ +Y+EN L+LE+S++ ++ +L +VDRLI++D+EI W+DI+ D+ S +F M L
Sbjct: 184 LTLYVENMLRLENSSLSSVLGGQMLSLIVDRLIEIDVEIRWEDIMRDEDSNKVFMFHMNL 243
Query: 256 EDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTG------ 309
+D E+ D +G+L + + +A+ +D +M +T +HL +C G
Sbjct: 244 DDDEDFRSDL--------TGALP----TLDEMADKMDLIMDMTLDHLHTCVQNGHGDLVF 291
Query: 310 -----------------RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSA 352
+ +F++FY C+L PE CG FA++L D+F PP TRMSA
Sbjct: 292 ETLMRSFQTTILDTYKSKFTQFLIFYLCSLAPETCGSTFASLLCDIFECKTRPPNTRMSA 351
Query: 353 VSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYC-------NILGGDINPKAHRVFYSGC 405
+YLAS+L+RA +L ++ ++RL+ WC+ Y N ++P H VFY C
Sbjct: 352 AAYLASYLARAAYLPLNVVMDSVRRLLHWCVSYAQLAEDRRNPTMTSVDPVLHGVFYCAC 411
Query: 406 QAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARL 465
QA+MYVLCFR++ + + RLK L +PL+ +++H L PL +CLPSVV EF++Q+ A+L
Sbjct: 412 QAVMYVLCFRLKDLTEDQRLKRLLRNLPLQELVEHHLKPLTICLPSVVDEFVKQASIAQL 471
Query: 466 FTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
+ D S+ +FGG RLDMFFPFDP LL++SDRF
Sbjct: 472 VDCRQWSNIRDAAASQACGSFGGEGRLDMFFPFDPYLLRQSDRF 515
>gi|168037110|ref|XP_001771048.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677736|gb|EDQ64203.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 624
Score = 305 bits (780), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 195/483 (40%), Positives = 282/483 (58%), Gaps = 50/483 (10%)
Query: 60 DNRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNG 119
D L + ALS VSY++ H +LL + GMS+W Y +V+DAL +++L+ +NG
Sbjct: 16 DGAPELAVRINALSQTVSYLNERSHRTLLQYLLGMSIWTYSYEVVDALLSFVVNLSTANG 75
Query: 120 KYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLP 179
+V CL MLV NF PPS L + GL QVL R+H+AL DLVP A RL
Sbjct: 76 CFVPDCLDMLVRNFLPPSCGLPSFFDSLGL--LSQVLERLHSALVRTVDLVPTAAFRLQH 133
Query: 180 IVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWD 239
IVVQRMP H ++ + + +Y+EN L+LESS++ + +L +VDRLI++D+EI W+
Sbjct: 134 IVVQRMP--HRTCDK-QWLALYVENMLRLESSSLSSALGGQMLSLIVDRLIEIDVEIRWE 190
Query: 240 DILHDDFSKGIF--EMELEDVE-EAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMV 296
DIL ++ S +F M LED + A+DA++V LP+ + +A+ +D +M
Sbjct: 191 DILREEDSSKVFMFHMNLEDDDLFGANDADEV---LPTL---------DEMADKMDLIMD 238
Query: 297 LTFEHLESCEGTG-----------------------RLIEFVMFYACALDPENCGLRFAT 333
+T +HL +C G + +F++FY C+L P CG FA+
Sbjct: 239 MTLDHLHTCVQNGHGDLVFETLMRSFQTTILDTYKSKFTQFLIFYLCSLAPSTCGNTFAS 298
Query: 334 MLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDI 393
+L D+F S PP TRMSA +YLAS+L+RA +L +V ++RL+DWC+ Y +
Sbjct: 299 LLCDIFESKTRPPNTRMSAAAYLASYLARAGYLPLTVVVESVRRLLDWCVSYAQLAQDRR 358
Query: 394 NPKA-------HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLK 446
NP H VFY CQA+MYVLCFR++ + + RLK L +PL+ +++H L PLK
Sbjct: 359 NPTMTTADPVLHGVFYCACQAVMYVLCFRLKDLTEDQRLKRVLRTLPLQELVEHHLKPLK 418
Query: 447 VCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKS 506
VCLPSVV EF++Q+ A+L + D + + +FGG RLDMFFPFDP LL++S
Sbjct: 419 VCLPSVVDEFVKQASIAQLVDCRQWSNTRDATAVQSAGSFGGEGRLDMFFPFDPYLLRES 478
Query: 507 DRF 509
DRF
Sbjct: 479 DRF 481
>gi|302769097|ref|XP_002967968.1| hypothetical protein SELMODRAFT_440149 [Selaginella moellendorffii]
gi|300164706|gb|EFJ31315.1| hypothetical protein SELMODRAFT_440149 [Selaginella moellendorffii]
Length = 637
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 202/541 (37%), Positives = 301/541 (55%), Gaps = 55/541 (10%)
Query: 20 ISDLELVYHVREALTSVQSGDN-DNYNQLVAVMHLSGRLDPDNRALLETSLKALSGAVSY 78
+ D +L VR + SG++ D Y +L++ + DP++ + L ++ALS VS
Sbjct: 17 VDDKQLQEIVRSWMLQALSGEDIDRYRKLLSDLKNVDFDDPESVSGLAARIRALSQCVSI 76
Query: 79 IDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPS- 137
I+ HE LL +F MS W+ +++DA++ L+++LA S+G V CL MLV NF PPS
Sbjct: 77 INERDHEMLLSLVFSMSFWSGSNELLDAIENLVVNLATSSGVLVPRCLDMLVRNFLPPSC 136
Query: 138 --------YFLDKLK------------EPHGLERKHQVLSRVHAALKSIFDLVPLAPTRL 177
Y D+L +P L K V++RVH AL+ I +LVP+A RL
Sbjct: 137 GIKVHLDCYTQDRLARKKMTFESLKGLKPLHLSMKSDVVNRVHLALQRILELVPIAALRL 196
Query: 178 LPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIG 237
PIV QRMP H + ++ +++EN L L+S + + S +L+ +VDRLI++D+EI
Sbjct: 197 HPIVQQRMP--HRRVDK-DWNSLFLENMLLLDSKRVSPAISSRMLLGIVDRLIEIDVEIA 253
Query: 238 WDDILHDDFSKGIFEMELEDVEEAADDAEQVGDELP-SGSLSRKSLSGNL--IAELLDSL 294
W+DIL D+ S + + DV+E+ D G E +L+ S L IA+ +D L
Sbjct: 254 WEDILKDEDSSKVLVFHM-DVDESDDKQAAPGSEAQLEHALAAHSGKKPLDEIADKMDHL 312
Query: 295 MVLTFEHLESCEGTGRLIE-----------------------FVMFYACALDPENCGLRF 331
M L FEHL C RL E F++FY C+L P +CG+ F
Sbjct: 313 MELVFEHLHQCAKNERLDEVYTTLMVSFKSTVLDTYKSKFTQFLIFYLCSLSPSSCGVNF 372
Query: 332 ATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNI--- 388
A L + FV+ P TRMSA +YLAS+L+RA FL ++S + RLV+WC+ +
Sbjct: 373 AGFLCETFVTRSIPSNTRMSAAAYLASYLARANFLPLPVVLSSVSRLVNWCVSFTPTRFD 432
Query: 389 LGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVC 448
+ + H VFY+ CQA+MY+LCFR+R + + L + L+ +++H L PLKVC
Sbjct: 433 VFKLTDTALHGVFYAACQAVMYILCFRLRELHADSTQRPLLKGLRLQQLIEHKLCPLKVC 492
Query: 449 LPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDR 508
LPSVV EF++Q+ A +L + S T + E +++GG RL+MFFPFDP LL++SDR
Sbjct: 493 LPSVVEEFVRQATAIQLISYSGTVEPSSGFEVLSFKSYGGDNRLEMFFPFDPYLLRRSDR 552
Query: 509 F 509
F
Sbjct: 553 F 553
>gi|302761060|ref|XP_002963952.1| hypothetical protein SELMODRAFT_405493 [Selaginella moellendorffii]
gi|300167681|gb|EFJ34285.1| hypothetical protein SELMODRAFT_405493 [Selaginella moellendorffii]
Length = 635
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 200/542 (36%), Positives = 304/542 (56%), Gaps = 57/542 (10%)
Query: 20 ISDLELVYHVREALTSVQSGDN-DNYNQLVAVMHLSGRLDPDNRALLETSLKALSGAVSY 78
+ D +L VR + SG++ D Y +L++ + D ++ + L ++ALS VS
Sbjct: 17 VDDKQLQEIVRSWILQALSGEDIDRYRKLLSDLKNVDFDDSESVSGLAARIRALSQCVSI 76
Query: 79 IDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPS- 137
I+ HE LL +F MS W+ +++DA++ L+++LA S+G V CL MLV NF PPS
Sbjct: 77 INERDHEMLLSLVFSMSFWSGSNELLDAIENLVVNLATSSGVLVPRCLDMLVRNFLPPSC 136
Query: 138 --------YFLDKLK------------EPHGLERKHQVLSRVHAALKSIFDLVPLAPTRL 177
Y D+L +P L K+ V++RVH AL+ I +LVP+A RL
Sbjct: 137 GIKVHLDCYTQDRLARKKMTFESLKGLKPLHLSMKNDVMNRVHLALQRILELVPIAALRL 196
Query: 178 LPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIG 237
PIV QRMP H + ++ +++EN L L+S + + S +L+ +VDRLI++D+EI
Sbjct: 197 HPIVQQRMP--HRRVDK-DWNSLFLENMLLLDSKRVSPAISSRMLLGIVDRLIEIDVEIA 253
Query: 238 WDDILHDDFSKGI--FEMELE--DVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDS 293
W+DIL D+ S + F M+++ D ++AA +E + + +K L + IA+ +D
Sbjct: 254 WEDILKDEDSSKVLVFHMDVDESDDKQAAPGSEAQLEHALAAHSGKKPL--DEIADKMDH 311
Query: 294 LMVLTFEHLESCEGTGRLIE-----------------------FVMFYACALDPENCGLR 330
LM L FEHL C RL E F++FY C+L P +CG
Sbjct: 312 LMELVFEHLHQCAKNERLDEVYTTLMVSFKSTVLDTYKSKFTQFLIFYLCSLSPSSCGAN 371
Query: 331 FATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNI-- 388
FA L + FV+ P TRMSA +YLAS+L+RA FL ++S + RLV+WC+ +
Sbjct: 372 FAGFLCETFVTRSIPSNTRMSAAAYLASYLARANFLPLPVVLSSVSRLVNWCVSFTPTRF 431
Query: 389 -LGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKV 447
+ + H VFY+ CQA+MY+LCFR+R + + L + L+ +++H L PLKV
Sbjct: 432 DVFKLTDTALHGVFYAACQAVMYILCFRLRELYAESTQRPLLKGLRLQQLIEHKLCPLKV 491
Query: 448 CLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSD 507
CLPSVV EF++Q+ A +L + S T + E +++GG RL+MFFPFDP LL++SD
Sbjct: 492 CLPSVVEEFVRQATAIQLISYSGTVEPSSGFEVLSFKSYGGDNRLEMFFPFDPYLLRRSD 551
Query: 508 RF 509
RF
Sbjct: 552 RF 553
>gi|217074922|gb|ACJ85821.1| unknown [Medicago truncatula]
Length = 292
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 126/194 (64%), Positives = 164/194 (84%)
Query: 316 MFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLL 375
MFYACALD E CG+ FA +L ++F S + PP+TRMSAV+YLAS+LSRA+FLS + +++
Sbjct: 1 MFYACALDSEGCGVNFAMVLTEMFDSRVNPPITRMSAVAYLASYLSRAKFLSSELVANII 60
Query: 376 KRLVDWCLEYCNILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLE 435
+RLVDWC YC + D+NP+AH+VFYS CQAIMY+LCFRM+S+M++PRLK +L+ MP+E
Sbjct: 61 QRLVDWCFAYCKLHDFDMNPQAHQVFYSACQAIMYILCFRMKSLMEVPRLKVKLIKMPME 120
Query: 436 TVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMF 495
+ KH LNPLKVCLPSVV EFL+Q+KAARLF +E F+F+DLLE++LS+AFGG+ RLDMF
Sbjct: 121 LIWKHKLNPLKVCLPSVVEEFLKQAKAARLFMSAELFIFDDLLEADLSKAFGGINRLDMF 180
Query: 496 FPFDPCLLKKSDRF 509
FPFDPCLLKKS+ +
Sbjct: 181 FPFDPCLLKKSESY 194
>gi|52076696|dbj|BAD45609.1| RNA polymerase I specific transcription initiation factor RRN3-like
[Oryza sativa Japonica Group]
gi|52077032|dbj|BAD46065.1| RNA polymerase I specific transcription initiation factor RRN3-like
[Oryza sativa Japonica Group]
Length = 291
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 117/197 (59%), Positives = 148/197 (75%), Gaps = 3/197 (1%)
Query: 316 MFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLL 375
MFYAC+LDPE CGL FA L+D+F+ ++RMSAVSY+ S+LSRARF+S +V +L
Sbjct: 1 MFYACSLDPEICGLEFALFLSDIFIKKEEDSISRMSAVSYVGSYLSRARFISADTVVGIL 60
Query: 376 KRLVDWCLEYCNILGG---DINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLM 432
KRLVDWC++YC++ P H++FY+ CQA+MY+LCFR+RSIMD P LK+QL M
Sbjct: 61 KRLVDWCVDYCDLQNNIRITTKPINHQIFYASCQAVMYILCFRLRSIMDYPNLKAQLFNM 120
Query: 433 PLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERL 492
P +L H L PLKVCLPS+V EFL+Q+KAARLF S F D LES+LS+ FGG+ RL
Sbjct: 121 PFGYILTHPLEPLKVCLPSIVDEFLRQAKAARLFNASVHSEFEDALESDLSKTFGGMNRL 180
Query: 493 DMFFPFDPCLLKKSDRF 509
DMFFPFDP LLK+SDR+
Sbjct: 181 DMFFPFDPYLLKESDRY 197
>gi|224096666|ref|XP_002310691.1| predicted protein [Populus trichocarpa]
gi|222853594|gb|EEE91141.1| predicted protein [Populus trichocarpa]
Length = 355
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 162/446 (36%), Positives = 218/446 (48%), Gaps = 127/446 (28%)
Query: 91 IFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLE 150
IFGMSMWN PDVM A L+I +A
Sbjct: 2 IFGMSMWNCVPDVMGAFLELVICVAI---------------------------------- 27
Query: 151 RKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNK---HERLKM-IVVYMENTL 206
K QVL VH L+ I DLVP+A L VVQ P K + LK + +Y++N L
Sbjct: 28 -KEQVLPCVHTGLEVIVDLVPMAAINLSTTVVQMRPMFFRKDFNTDHLKCHLQIYLKNML 86
Query: 207 KLESSAMGELVRSTLLMAVVDRLID-----------------------------LDMEIG 237
LE A+ E V +++L+ VV+ L + L + IG
Sbjct: 87 MLEGGAIREFVGNSMLVEVVNMLFNSRIGYKWCNKLVLGISLIFCITLNVKELSLQVVIG 146
Query: 238 WDDILHDDFSKGIFEMELEDVEEAADDAEQVGD--ELPSGSLSRKSLSGNLIAELLDSLM 295
WD++L DD KGIF MELED +E DD Q + ELPS +L KSL ++ +LLD+LM
Sbjct: 147 WDEMLRDDLCKGIFTMELEDEDEVVDDDGQANNDGELPS-TLILKSLGKSVTVDLLDTLM 205
Query: 296 VLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSY 355
+ +F ++L + + L+ RMSA +Y
Sbjct: 206 I---------------------------------QFLSILKPLQIRSLW---VRMSARAY 229
Query: 356 LASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKAHRVFYSGCQAIMYVLCFR 415
LAS+L+R +FLS +V++LK C +L N + + Y Y
Sbjct: 230 LASYLARGKFLSVSSLVNVLKS------TSCFLLCMPGNYERALLSYEINNECSYA---- 279
Query: 416 MRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFN 475
+SQLLLM +E++LKH L PL+VCLPS+V+EFL+Q+KAA LFT+S+ F+F
Sbjct: 280 ----------QSQLLLMSIESILKHKLGPLEVCLPSIVNEFLKQAKAAHLFTISKAFIFE 329
Query: 476 DLLESELSRAFGGLERLDMFFPFDPC 501
DLLES+LSR FGGLE LDMFFPFDPC
Sbjct: 330 DLLESDLSRDFGGLEWLDMFFPFDPC 355
>gi|296088508|emb|CBI37499.3| unnamed protein product [Vitis vinifera]
Length = 235
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 96/163 (58%), Positives = 126/163 (77%), Gaps = 3/163 (1%)
Query: 91 IFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLE 150
+FGM +WNY PDVMDAL LI+SLAAS+G Y+D CL +LVSNF PP FLD LK+ GL
Sbjct: 75 VFGMILWNYGPDVMDALLELILSLAASSGNYLDGCLDVLVSNFMPPYSFLDLLKQSRGLA 134
Query: 151 RKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLES 210
RK QVLSRVH+ + I DLVPL P+RL+P V+QRMP V + +IV+++EN L+LES
Sbjct: 135 RKDQVLSRVHSTSEDISDLVPLVPSRLVPKVIQRMPNVFTEE---PLIVLHVENMLRLES 191
Query: 211 SAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEM 253
A+ ELV +L+A++DRL+DLD+EI W++IL DD+S+G+FEM
Sbjct: 192 GAIQELVGKMMLVAMMDRLVDLDVEIAWEEILQDDYSQGMFEM 234
>gi|384247292|gb|EIE20779.1| RRN3-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 801
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 172/625 (27%), Positives = 258/625 (41%), Gaps = 143/625 (22%)
Query: 17 DVNISDLE--LVYHVREALTS-VQSG--DNDNYNQLVAVMH-----LSGRLDPDNRALLE 66
D + DL+ L HV+EA+ S Q G + +Y LV + G D + L
Sbjct: 11 DADAGDLDELLRLHVKEAVRSKSQKGGVKSASYKNLVDQIRRIKEKALGSKDEEQVEYLT 70
Query: 67 TSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCL 126
+ L AL+ VS + HESLL +F +S+W PD+ AL L+ L +N V CL
Sbjct: 71 SVLDALTTCVSSLHEHEHESLLNEVFDISIWQATPDLRAALLRLVTHLVVANSALVPLCL 130
Query: 127 TMLVSNFTPPSYFLDKLKEPHGLERKHQ---------VLSRVHAALKSIFDLVPLAPTRL 177
+L PP +L Q + +V AAL+ + LVP AP+RL
Sbjct: 131 RVLAMGLQPPPTPPVQLSPGESSPDSQQWQASPDLVAIQEQVIAALEKVLMLVPTAPSRL 190
Query: 178 LPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIG 237
+ ++ +P H +R +Y+ L L + VR +L A + L+ LD+EI
Sbjct: 191 MSVIAGGIP--HRLRDR-DAQCLYLRGALALAEAPAAAAVREGILAAAAEHLLSLDVEIR 247
Query: 238 WDDILHDDFSKG-------------IFEME-------LEDVEEAADDAEQV----GDELP 273
W DI + IFE+E L + A E++ G E
Sbjct: 248 WQDIAAAEADAADEEEGESEQEEEDIFELEGQTEQLHLSPQAQPASAPERLQGRGGWEGA 307
Query: 274 SGSL-SRKSLSGNLI----AELLDSLMVLTFEHL-ESCEGT------------------- 308
+G + + S SG AE LD+LM L FEHL CE
Sbjct: 308 AGGVETAASPSGRQPTTESAEKLDALMGLVFEHLGRRCEAGQLHAAWATTLHTFQRTILH 367
Query: 309 ---GRLIEFVMFYAC--------------------ALDPENCGLRFATMLADVFVSGLYP 345
+ +++++Y C + DP++C + +L S
Sbjct: 368 THRSKFTQYLLWYLCEKARPLPLPFLPQPIYPSSTSEDPKHCSVSLVQLLLGQLTSPNVA 427
Query: 346 PLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYC------------------- 386
P+TR +A +Y+ASFL+RA + ++ L+ L WCL YC
Sbjct: 428 PITRSAAAAYMASFLARAALVPEHILIESLQVLAGWCLAYCQEQDAKDARAALTIAPLST 487
Query: 387 --NILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPR-------------------- 424
++ G + H+VFY+ CQ ++YVLC+R+ +MD
Sbjct: 488 RLDMDAGPLRGIQHQVFYAACQGLLYVLCYRLEQLMDASAPAPSPSPSPSDSNSGGGRSA 547
Query: 425 -LKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELS 483
+ QL + +L H L PL VCLP+VV+EF + ++ L + SE +
Sbjct: 548 DIVRQLFTDVMPKLLHHRLAPLAVCLPTVVAEFTRLAQRLELMDCAALLPGR----SEAA 603
Query: 484 RAFGGLERLDMFFPFDPCLLKKSDR 508
RA LE MFFPFDP LL+ S R
Sbjct: 604 RAQRPLE---MFFPFDPFLLRHSAR 625
>gi|145351285|ref|XP_001420013.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580246|gb|ABO98306.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 761
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 157/568 (27%), Positives = 244/568 (42%), Gaps = 114/568 (20%)
Query: 37 QSGDNDNYNQLVAVMHLSGRLDPDNRALLETSLKALSGAVSYIDISHHESLL-VSIFGMS 95
+ G+ Y +L+ + D L + AL V+ ID HE L+ ++ G+
Sbjct: 49 EGGNRSRYYELLDATRGGDEGEDDGAVAL---MDALGSCVTLIDARAHEQLVDRALVGVD 105
Query: 96 MWNYDPDVMDA-LKGLIISLAASNGKYVDSCLTMLVSNFTPPS---YFLD-------KLK 144
+W + +A L+ + A G + + LV +F PS ++ D ++
Sbjct: 106 LWRCGEKMREAALRFGTQLVCAQGGAFSGGVVGKLVDSFNDPSGSAWWRDDGDGDGTAMR 165
Query: 145 EPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMEN 204
E G + +V+ + AL +I LVP + + +P +K + + +M
Sbjct: 166 EGEGTIGR-RVVGDLTRALGNILRLVPQSERAARKALRAGVP---HKTAPKDVQIGFMRA 221
Query: 205 TLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDIL--------------HDDFSKGI 250
L S G +R L VV L+++D+EI WDD++ ++ I
Sbjct: 222 AFALVESEDGAGLRDDFLKVVVAHLLEVDVEIKWDDVMSGADRTSADRGAAREEEEDDAI 281
Query: 251 FEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLES-CEGT- 308
FE L+D+E+ + EQ E + L+ + A+ LD LM L H++ C+G
Sbjct: 282 FE--LDDIEKTIE--EQCRAEWEQRPTTSAPLAVDEAADTLDGLMELAVAHIDKRCDGGE 337
Query: 309 ---------------------GRLIEFVMFYACALDPENCG----LRFATMLADVFVSGL 343
+ ++F++F+ C+ D C L F T L DV V+G
Sbjct: 338 TDAVRQALIHAFTVTLLPAPRSKFVQFLVFHLCSRDERACRELTELLF-TKLTDVSVAGS 396
Query: 344 YPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCN--------ILGG---- 391
R++A +Y ASFL+RA+ L P F+ LL+RLVDWCL + L G
Sbjct: 397 I----RLAAAAYFASFLARAKHLKPEFVCELLRRLVDWCLVHVKQRTTPGSAALSGATEK 452
Query: 392 -------DINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLL-MPLETVLKHDLN 443
+ + VF S CQA MYVLC+R IM + L +PL VL L
Sbjct: 453 TKVGMPPPVPQQTLAVFDSACQAAMYVLCYRAEDIMRAEGSSAMTLRSLPLCEVLYSHLR 512
Query: 444 PLKVCLPSVVSEFLQQSKAA---------------RLFTVSETFVFNDL-LESELSRAFG 487
PL CLPSVV+EFL ++ A R+ T ET V +++ L + S F
Sbjct: 513 PLSTCLPSVVTEFLHRAVGASMNGFTHVLLKEHMDRIATGRETDVSSNMPLSRQNSMEFT 572
Query: 488 GLE---------RLDMFFPFDPCLLKKS 506
+ L MFFPFDP LL++S
Sbjct: 573 STQVASTTRNRFPLRMFFPFDPYLLRRS 600
>gi|308808830|ref|XP_003081725.1| RNA polymerase I transcription factor (ISS) [Ostreococcus tauri]
gi|116060191|emb|CAL56250.1| RNA polymerase I transcription factor (ISS) [Ostreococcus tauri]
Length = 631
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 140/532 (26%), Positives = 233/532 (43%), Gaps = 90/532 (16%)
Query: 33 LTSVQSGDNDNYNQLVAVMHLSGR--LDPDNRALLETSLKALSGAVSYIDISHHESLL-V 89
+ S G +++ ++ ++ GR D L ALSG + ID HE L+ +
Sbjct: 33 VKSALDGSSESTSRYYELLDACGRATTSTDEADGAAALLDALSGHATMIDERKHEQLVSM 92
Query: 90 SIFGMSMWNYDPDVMD-ALKGLIISLAASNGKYVDSCLTMLVSNFTPP----SYFLDKLK 144
++ + +W + V LK + A G ++ + + LV +F P ++
Sbjct: 93 ALLKVDLWACEVGVRAMVLKFATQLVCAQGGAFIGAVVGKLVESFNAPFGREQWWKIDES 152
Query: 145 EPHG-------LERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKM 197
+ G ++ V+ + L +I LVP + + + + +P +K ++
Sbjct: 153 DDGGDGAALAHVQAGEVVIRDLTRCLGNILRLVPQSSRAVTHALREGVP---HKSAPKEV 209
Query: 198 IVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFS---------- 247
+ ++ L L SA G ++R L +V L+++D+EI WDD++ S
Sbjct: 210 QIGFIRAALILIESADGVVLRDDFLKVIVGHLLEVDVEIKWDDVVAGVTSGERGDGHEEE 269
Query: 248 ---KGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLES 304
IFE L+D+E++ + EQ E + L+ + A+ LD+LM LT H+
Sbjct: 270 EDDDAIFE--LDDIEKSIE--EQCRAEWEQRPTTSAPLAVDEAADTLDALMELTLAHVNK 325
Query: 305 CEGTG-----------------------RLIEFVMFYACALDPENC---GLRFATMLADV 338
G + ++F++F+ C+ D + C T L DV
Sbjct: 326 RMDDGEMMLVRRALMHAFKVTLLPAPRSKFVQFLVFHMCSRDEQACRELTEELFTTLTDV 385
Query: 339 FVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYC------------ 386
+G R++A +Y ASFL+RA+ L+P F+ +LKRLVDWC +
Sbjct: 386 SAAGSL----RLAAAAYFASFLARAKHLTPDFVCDMLKRLVDWCASHVKQKTTPGSAALS 441
Query: 387 ----NILGGDINPKAHR---VFYSGCQAIMYVLCFRMRSIMDIPRLKSQLL-LMPLETVL 438
+ G P+ H+ VF S CQA+MYVLC+R I+ + L +PL VL
Sbjct: 442 GAQEKTVVGMPPPEPHQTLAVFDSACQAMMYVLCYRAEDILHTEGSAAMTLRTLPLCEVL 501
Query: 439 KHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLE 490
L PL CLPSVV+EFL ++ AA + + DLL + R G E
Sbjct: 502 YSHLRPLHTCLPSVVTEFLHRAVAAGMHGFT-----GDLLREHMDRVATGRE 548
>gi|156403718|ref|XP_001640055.1| predicted protein [Nematostella vectensis]
gi|156227187|gb|EDO47992.1| predicted protein [Nematostella vectensis]
Length = 683
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 146/547 (26%), Positives = 247/547 (45%), Gaps = 115/547 (21%)
Query: 31 EALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRAL-LETSLKALSGAVSYIDISHHESLLV 89
+AL + G +Y+ LV + DP + L L+ LKAL G VS ++ S E+L+
Sbjct: 53 QALENYHKGKRGDYDFLVYKLG-----DPYLKPLYLQRYLKALKGCVSLLNKSC-ETLVG 106
Query: 90 SIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGL 149
++ + + D D + + L ++ Y+ +CL ML+ +F P + K E
Sbjct: 107 TVLRVDWASSDHDTVQEFIEFLTVLVSAQTYYLRACLKMLIKHFMP-NVPKGKTAEDLIK 165
Query: 150 ERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLE 209
E + Q + H AL+++ D+VP+ P LLP++ + P + +H+ + Y+ NTL++
Sbjct: 166 EEQEQAFANTHDALQAVLDVVPMTPKFLLPVLSECFPYI-KRHQVFQ--TSYVSNTLQV- 221
Query: 210 SSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAADDAEQVG 269
+ +R +L V++ + +D E+ E ++A++++E
Sbjct: 222 -TWYIPTLRGEILELVINHITKID------------------ELNPESPDKASEESEMAA 262
Query: 270 --DEL-------------PSGSLSRKSLSGNLIAELLDSLM-VLTFEH---LESCEG--- 307
D L P+ LS S S L L+ S+ + F H LE+ EG
Sbjct: 263 MLDSLMDILFKYMRDFCFPANELSLDS-STELFGYLVKSIFYIFVFRHRQCLETPEGQKF 321
Query: 308 ----------TGRL------------------IEFVMFYACALDPENCGLRFATMLADVF 339
T +L I+FVMFY C+LD F L +V
Sbjct: 322 VSKLNFQRIVTCKLNPLKSFEKVILPTHACCHIQFVMFYICSLDE-----VFTNSLLEVC 376
Query: 340 VSGLYPP----LTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCN-----ILG 390
+ P + R ++ +Y+AS ++RA+++S + + L+ L W Y + LG
Sbjct: 377 WKKVANPGEAGILRQASAAYMASLVARAKYISISTVKTCLELLTHWVHCYIDDHDEACLG 436
Query: 391 GDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLP 450
D+N H FYS CQ+I Y+ FR R ++ P + + + + ++ LNPLKVCLP
Sbjct: 437 ADVN--KHGPFYSVCQSIFYIFVFRHRQCLETPEGQKFVSKLNFQRIVTCKLNPLKVCLP 494
Query: 451 SVVSEFLQQSKAARL---FTVSE----------TFVFNDLLESELSRAFGGLERLDMFFP 497
+VV F Q +K ++ +TV E + + ++ S+LS LD FFP
Sbjct: 495 TVVDLFAQVTKLHQVVLCYTVIERNKRSMLPVSSAITSNRTISQLSLQ----NPLDSFFP 550
Query: 498 FDPCLLK 504
FDP LL+
Sbjct: 551 FDPYLLR 557
>gi|327286917|ref|XP_003228176.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase I-specific
transcription initiation factor RRN3-like [Anolis
carolinensis]
Length = 618
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 126/489 (25%), Positives = 213/489 (43%), Gaps = 93/489 (19%)
Query: 85 ESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDK-- 142
E L+ + +S P V++ + +L ++ Y+ CL M+VS+F PP + +
Sbjct: 90 EQLVTILLKVSWLRRSPAVVEEYLAFLSNLVSAQTIYLRPCLAMIVSHFIPPRITIQENN 149
Query: 143 ---LKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIV 199
E H AL++I VPL P L+P++V++ P + NK ER +
Sbjct: 150 VDISDSDDDDENVPASFDICHRALQTIVKYVPLTPQFLMPVLVEKFPFI-NKSER--TLQ 206
Query: 200 VYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFS-------KGIFE 252
Y+ N L++ S ++R +L V++R++ +D+ DI + KG+F
Sbjct: 207 CYVHNMLRI--SGYIPVLRYDILELVIERILKMDVSAPRKDIEAAEEVESEENAEKGLF- 263
Query: 253 MELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLES-CEGTGRL 311
D++E ++ E + + IAE LD LM++ F +++ C G+L
Sbjct: 264 ----DLDEDGENPE------------KSDTMAHPIAERLDILMIVLFSYVKDVCHVNGKL 307
Query: 312 ----------------------------IEFVMFYACALDPENCGLRFATMLADVFVSGL 343
++++MFY + F +A+ FV L
Sbjct: 308 DIGNTKDLYRDLVAVFDKLILPTHGSCHVQYIMFYLSS---------FKLGIAEAFVEHL 358
Query: 344 Y--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGD--- 392
+ P + R +A +Y+ SFL+RA+F+ + + L LV+W Y + G
Sbjct: 359 WKKLQDPNTPTVIRQAAANYIGSFLARAKFIPVVTVKACLDLLVNWLHLYIDNQGSGSKA 418
Query: 393 -INPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPL--ETVLKHDLNPLKVCL 449
+ H FY+ CQA+ YV+ FR + I+D K L L L E ++ LNPLK+CL
Sbjct: 419 FCDVALHGSFYAACQAVFYVVIFRHKQILDGSLKKGLLFLQNLNFERIVMSQLNPLKICL 478
Query: 450 PSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGG-------LERLDMFFPFDPCL 502
PS+V+ F ++ ++ N + R+ G LD FFPFDP +
Sbjct: 479 PSIVNFFAALTRKYQIAFCDTIIERNRRQVLPVIRSSCGGDAVETATNPLDSFFPFDPYV 538
Query: 503 LKKSDRFAN 511
L +S N
Sbjct: 539 LNRSKNIIN 547
>gi|224070078|ref|XP_002195883.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 isoform 1 [Taeniopygia guttata]
Length = 616
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 142/541 (26%), Positives = 240/541 (44%), Gaps = 89/541 (16%)
Query: 31 EALTSVQSGDNDNYNQLVAVMHLSGRLDPDNR-ALLETSLKALSGAVSYIDISHHESLLV 89
E L + GD ++ L + DPD + A + L +V+Y+ + LV
Sbjct: 24 EILLKYEKGDATDFELLKHQLS-----DPDIKDAQIINWLHEFRASVAYL--TKELGQLV 76
Query: 90 SIFGMSMW-NYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHG 148
+I W +V++ G + +L ++ ++ CL M+VS F PP + +
Sbjct: 77 NILLKLPWLRRSREVVEEYLGFLGNLVSAQTVHLRPCLRMIVSQFVPPRITIREDDVDIS 136
Query: 149 L-----ERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYME 203
E + H AL+++ VP P L+PI+V+ P + NK ER + Y+
Sbjct: 137 DSDDDDENISENFDTCHRALQTVARYVPSTPQFLMPILVEFFPFI-NKSER--TLECYVH 193
Query: 204 NTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAAD 263
N L++ + +R +L ++++L+ LD+ DI + + E + EE
Sbjct: 194 NLLRV--TVYLPTLRLQILELIIEKLLKLDVSTPQQDIEDAEETANNCASEEKSTEEGLF 251
Query: 264 DAEQ----VGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLES-CEGTGRL------- 311
D E+ G+++ S S+ R + + +AE LD LM + F ++ C G+L
Sbjct: 252 DMEEDEDGKGNKVVSPSIERMA---HPLAERLDILMTILFSYIRDVCHVDGKLNISNTKD 308
Query: 312 ---------------------IEFVMFYACALDPENCGLRFATMLADVFVSGLY------ 344
+++ MFY C+ F A+ F+ L+
Sbjct: 309 LYRDLVSVFDKLILPTHASCHVQYFMFYICS---------FKLGFAEAFLDHLWKKLQDP 359
Query: 345 --PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA----H 398
P + R +A SY+ SFL+RA+F+ + + L LV+W +Y + N H
Sbjct: 360 NNPSVIRQTAGSYIGSFLARAKFIPIVTVKACLDLLVNWLHKYIDNQDKGANAYCDVALH 419
Query: 399 RVFYSGCQAIMYVLCFRMRSIMD--IPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEF 456
FYS CQA+ Y L FR + ++D + + S L + E ++ LNPLK+C+PSVV+ F
Sbjct: 420 GPFYSTCQAVFYTLIFRHKQLLDGNLRKGLSYLQSLNFERIVMCQLNPLKICIPSVVNLF 479
Query: 457 LQQSKAARL---FTVSETFVFNDLLESELSRAFGG------LERLDMFFPFDPCLLKKSD 507
++ +L +T+ E N LL + GG LD FFPFDP +LK+S
Sbjct: 480 AAITRKYQLVFCYTIIER--NNRLLIPVVRSGTGGDLVQTCTNPLDSFFPFDPYILKRSK 537
Query: 508 R 508
+
Sbjct: 538 K 538
>gi|260801731|ref|XP_002595749.1| hypothetical protein BRAFLDRAFT_260046 [Branchiostoma floridae]
gi|229280996|gb|EEN51761.1| hypothetical protein BRAFLDRAFT_260046 [Branchiostoma floridae]
Length = 548
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 145/555 (26%), Positives = 253/555 (45%), Gaps = 90/555 (16%)
Query: 16 EDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRA-LLETSLKALSG 74
E + + + + E L + + G Y+ LV + DPD ++ L LK L G
Sbjct: 9 EAIGVKSVRFGGEIVEVLKNFKRGQETEYHLLVHQLS-----DPDIKSQTLICWLKELKG 63
Query: 75 AVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFT 134
V+++ E+L+ I MS N + +V+ + +L ++ Y+ +CL MLV
Sbjct: 64 CVAFM-TKEFETLVGVILKMSWANSEDEVVKEYLSFLGNLVSAQTFYLRACLKMLVKTLV 122
Query: 135 PPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHER 194
P D E +E +++ H+AL+ + +VPLAP L P++V P + K +
Sbjct: 123 P-RVSSDIPLEEAKIEEYNRIFENAHSALQRVLHIVPLAPKFLAPVLVDCFP--YMKKDA 179
Query: 195 LKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDME-------------IGWDDI 241
+ Y+ N L++ S +R +L ++DR+I +D+ + +
Sbjct: 180 F-VQECYVRNLLQMTSYVPS--LRLPILELIIDRMIRIDVHAPKHELEEDEEEDAEDETM 236
Query: 242 LHDDFSKGIFEMELEDVEEAADDA--EQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTF 299
H D + +FEM V+ A D A + G+ P + + + LD +M +
Sbjct: 237 EHQDDTSILFEM----VKSAPDLAVTMETGESKPMT---------HEMGDRLDVMMTVML 283
Query: 300 EHL-ESC--EGTGRL-----IEFVMFYACALD----PENCG-----LRFATM-----LAD 337
+++ +SC + TG L IE A + P + LRF + LAD
Sbjct: 284 QYIKDSCLNKDTGELQTQPTIEMFRHLLTAFEKLLLPTHASCHVQFLRFTVLHLFQDLAD 343
Query: 338 VFVSGLY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNIL 389
F++ + P + R +A +Y+ASFL+RA F+ +++ L L+ W Y +
Sbjct: 344 AFLNFCWRKVQSPNTPVILRQAAAAYMASFLARANFVPLSTVIACLDLLLPWIHRYIDDQ 403
Query: 390 GG------DINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLN 443
G D+N H FYS CQA+ Y+ FR + ++ + + + + + V+ LN
Sbjct: 404 DGSTRSYPDVN--LHGTFYSVCQAVFYMFVFRHKQFVESKKGLNYIRGLNFDRVINCRLN 461
Query: 444 PLKVCLPSVVSEFLQQSKAARL---FTVSETFVFNDLLESELSRAFGG------LERLDM 494
PLKVCLP++V+ F ++ ++ +T+ E N + ++ + GG L LD
Sbjct: 462 PLKVCLPTIVNMFASITRMYQIVMCYTIMER--NNRSVLPVVASSQGGPTDVTNLNPLDA 519
Query: 495 FFPFDPCLLKKSDRF 509
FFPFDP +L +S RF
Sbjct: 520 FFPFDPYMLSRSKRF 534
>gi|383872655|ref|NP_001244593.1| RNA polymerase I-specific transcription initiation factor RRN3
[Macaca mulatta]
gi|355709985|gb|EHH31449.1| Transcription initiation factor IA [Macaca mulatta]
gi|380813966|gb|AFE78857.1| RNA polymerase I-specific transcription initiation factor RRN3
[Macaca mulatta]
gi|383412703|gb|AFH29565.1| RNA polymerase I-specific transcription initiation factor RRN3
[Macaca mulatta]
Length = 651
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 139/551 (25%), Positives = 229/551 (41%), Gaps = 103/551 (18%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRA-LLETSLKALSGAVSYIDISHHESL 87
V E L + G+ +++ L + LDPD + + L ++ Y+ E L
Sbjct: 56 VTEVLLKYKKGETNDFELLKNQL-----LDPDIKDDQIINWLLEFRSSIMYL-TKDFEQL 109
Query: 88 LVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPH 147
+ I + N V++ + +L ++ ++ CL+M+ S+F PP + +
Sbjct: 110 ISIILRLPWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGDVDV 169
Query: 148 GLERKHQV-----LSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYM 202
H AL+ I VP P L+PI+V++ P V L+ Y+
Sbjct: 170 SDSEDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVQKSERTLE---CYV 226
Query: 203 ENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILH-----------DDFSKGIF 251
N L++ S +R +L ++++L+ LD+ DI D ++G+F
Sbjct: 227 HNLLRI--SVYFPTLRHEILELIIEKLLKLDVNASRQDIEDAEETATQTCGGTDSTEGLF 284
Query: 252 EMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLES-CEGTGR 310
M D+ E+ + +G +R + +AE LD LM L +++ C G+
Sbjct: 285 NM---------DEDEETEHDTKAGP-ARLDQMVHPVAERLDILMSLVLSYMKDVCYVDGK 334
Query: 311 L----------------------------IEFVMFYACALDPENCGLRFATMLADVFVSG 342
+ ++F MFY C+ F A+ F+
Sbjct: 335 VDNSKTKDLYRDLINIFDKLLLPTHASCHVQFFMFYLCS---------FKLGFAEAFLEH 385
Query: 343 LY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDIN 394
L+ P + R +A +Y+ SFL+RA+F+ + S L LV+W Y N D
Sbjct: 386 LWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLLVNWLHIYLN--NQDSG 443
Query: 395 PKA------HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP---LETVLKHDLNPL 445
KA H FYS CQA+ Y FR + ++ LK L + E ++ LNPL
Sbjct: 444 TKAFCDVALHGPFYSACQAVFYTFVFRHKQLLS-GNLKEGLRYLQSLNFERIVMSQLNPL 502
Query: 446 KVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER-------LDMFFPF 498
KVCLPSVV+ F + +L N+ + R+ G + LD FFPF
Sbjct: 503 KVCLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQTCTNPLDTFFPF 562
Query: 499 DPCLLKKSDRF 509
DPC+LK+S +F
Sbjct: 563 DPCVLKRSKKF 573
>gi|402907734|ref|XP_003916622.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 isoform 3 [Papio anubis]
Length = 618
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 139/551 (25%), Positives = 229/551 (41%), Gaps = 103/551 (18%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRA-LLETSLKALSGAVSYIDISHHESL 87
V E L + G+ +++ L + LDPD + + L ++ Y+ E L
Sbjct: 23 VTEVLLKYKKGETNDFELLKNQL-----LDPDIKDDQIINWLLEFRSSIMYL-TKDFEQL 76
Query: 88 LVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPH 147
+ I + N V++ + +L ++ ++ CL+M+ S+F PP + +
Sbjct: 77 ISIILRLPWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGDVDV 136
Query: 148 GLERKHQV-----LSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYM 202
H AL+ I VP P L+PI+V++ P V L+ Y+
Sbjct: 137 SDSEDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLE---CYV 193
Query: 203 ENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILH-----------DDFSKGIF 251
N L++ S +R +L ++++L+ LD+ DI D ++G+F
Sbjct: 194 HNLLRI--SVYFPTLRHEILELIIEKLLKLDVNASRQDIEDAEETATQTCGGTDSTEGLF 251
Query: 252 EMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLES-CEGTGR 310
M D+ E+ + +G +R + +AE LD LM L +++ C G+
Sbjct: 252 NM---------DEDEETEHDTKAGP-ARLDQMVHPVAERLDILMSLVLSYMKDVCYVDGK 301
Query: 311 L----------------------------IEFVMFYACALDPENCGLRFATMLADVFVSG 342
+ ++F MFY C+ F A+ F+
Sbjct: 302 VDNSKTKDLYRDLINIFDKLLLPTHASCHVQFFMFYLCS---------FKLGFAEAFLEH 352
Query: 343 LY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDIN 394
L+ P + R +A +Y+ SFL+RA+F+ + S L LV+W Y N D
Sbjct: 353 LWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLLVNWLHIYLN--NQDSG 410
Query: 395 PKA------HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP---LETVLKHDLNPL 445
KA H FYS CQA+ Y FR + ++ LK L + E ++ LNPL
Sbjct: 411 TKAFCDVALHGPFYSACQAVFYTFVFRHKQLLS-GNLKEGLRYLQSLNFERIVMSQLNPL 469
Query: 446 KVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER-------LDMFFPF 498
KVCLPSVV+ F + +L N+ + R+ G + LD FFPF
Sbjct: 470 KVCLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQTCTNPLDTFFPF 529
Query: 499 DPCLLKKSDRF 509
DPC+LK+S +F
Sbjct: 530 DPCVLKRSKKF 540
>gi|402907730|ref|XP_003916620.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 isoform 1 [Papio anubis]
Length = 651
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 139/551 (25%), Positives = 229/551 (41%), Gaps = 103/551 (18%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRA-LLETSLKALSGAVSYIDISHHESL 87
V E L + G+ +++ L + LDPD + + L ++ Y+ E L
Sbjct: 56 VTEVLLKYKKGETNDFELLKNQL-----LDPDIKDDQIINWLLEFRSSIMYL-TKDFEQL 109
Query: 88 LVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPH 147
+ I + N V++ + +L ++ ++ CL+M+ S+F PP + +
Sbjct: 110 ISIILRLPWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGDVDV 169
Query: 148 GLERKHQV-----LSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYM 202
H AL+ I VP P L+PI+V++ P V L+ Y+
Sbjct: 170 SDSEDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLE---CYV 226
Query: 203 ENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILH-----------DDFSKGIF 251
N L++ S +R +L ++++L+ LD+ DI D ++G+F
Sbjct: 227 HNLLRI--SVYFPTLRHEILELIIEKLLKLDVNASRQDIEDAEETATQTCGGTDSTEGLF 284
Query: 252 EMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLES-CEGTGR 310
M D+ E+ + +G +R + +AE LD LM L +++ C G+
Sbjct: 285 NM---------DEDEETEHDTKAGP-ARLDQMVHPVAERLDILMSLVLSYMKDVCYVDGK 334
Query: 311 L----------------------------IEFVMFYACALDPENCGLRFATMLADVFVSG 342
+ ++F MFY C+ F A+ F+
Sbjct: 335 VDNSKTKDLYRDLINIFDKLLLPTHASCHVQFFMFYLCS---------FKLGFAEAFLEH 385
Query: 343 LY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDIN 394
L+ P + R +A +Y+ SFL+RA+F+ + S L LV+W Y N D
Sbjct: 386 LWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLLVNWLHIYLN--NQDSG 443
Query: 395 PKA------HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP---LETVLKHDLNPL 445
KA H FYS CQA+ Y FR + ++ LK L + E ++ LNPL
Sbjct: 444 TKAFCDVALHGPFYSACQAVFYTFVFRHKQLLS-GNLKEGLRYLQSLNFERIVMSQLNPL 502
Query: 446 KVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER-------LDMFFPF 498
KVCLPSVV+ F + +L N+ + R+ G + LD FFPF
Sbjct: 503 KVCLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQTCTNPLDTFFPF 562
Query: 499 DPCLLKKSDRF 509
DPC+LK+S +F
Sbjct: 563 DPCVLKRSKKF 573
>gi|449277428|gb|EMC85593.1| RNA polymerase I-specific transcription initiation factor RRN3,
partial [Columba livia]
Length = 562
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 132/512 (25%), Positives = 226/512 (44%), Gaps = 80/512 (15%)
Query: 58 DPDNR-ALLETSLKALSGAVSYIDISHHESLLVSIFGMSMW-NYDPDVMDALKGLIISLA 115
DPD + A + L +V Y+ + LVSI W +V++ G + +L
Sbjct: 15 DPDIKDAQIINWLHEFRASVVYLTKDLEQ--LVSILLKLPWLRRSREVVEEYLGFLGNLV 72
Query: 116 ASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGL-----ERKHQVLSRVHAALKSIFDLV 170
++ ++ CL M+VS F PP + + E + + H AL+++ V
Sbjct: 73 SAQTVHLRPCLRMIVSQFVPPRITVREDDVDISDSDDDDENLSENFNTCHRALQTVARYV 132
Query: 171 PLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLI 230
P P L+PI+V+ P + NK ER + Y+ N L++ + +R +L ++++L+
Sbjct: 133 PSTPQFLMPILVENFPFI-NKSER--TLECYVHNLLRV--TVYLPSLRLQILELIIEKLL 187
Query: 231 DLDMEIGWDDILHDDFSKGIFEMELEDVEEA----ADDAEQVGDELPSGSLSRKSLSGNL 286
LD+ +I + + E + EE +D E+ G+ + S S R + +
Sbjct: 188 KLDVSTPQQEIEDAEETANSSGSEEKSPEEGLFDMEEDEERRGNTIVSSSSERMA---HP 244
Query: 287 IAELLDSLMVLTFEHLES-CEGTGRL----------------------------IEFVMF 317
+AE LD LM + F +++ C +L +++ MF
Sbjct: 245 LAERLDILMTILFSYIKDVCHVDDKLDINKTKDLYRDLVSVFDKLILPTHASCHVQYFMF 304
Query: 318 YACALDPENCGLRFATMLADVFVSGLY--------PPLTRMSAVSYLASFLSRARFLSPC 369
Y C+ F LA+ F+ L+ P + R +A SY+ SFL+RA+F+
Sbjct: 305 YICS---------FKLALAEAFLDHLWKKLHDPNNPSVIRQTAGSYIGSFLARAKFIPVV 355
Query: 370 FIVSLLKRLVDWCLEYCNILGGDINPKA----HRVFYSGCQAIMYVLCFRMRSIMD--IP 423
+ + L LV+W +Y + N H FYS CQ + Y L FR + ++D +
Sbjct: 356 TVKACLDLLVNWLHKYIDNQDTGANAYCDVALHGPFYSTCQTVFYTLIFRHKQLLDGNLR 415
Query: 424 RLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELS 483
+ S L + E ++ LNPLK+C+PSVV+ F ++ +L N+ +
Sbjct: 416 KGLSYLQSLNFERIVMCQLNPLKICIPSVVNLFAAITRKYQLVFCYTIIERNNRQFIPVV 475
Query: 484 RAFGG-------LERLDMFFPFDPCLLKKSDR 508
R+ G LD FFPFDP +LK+S +
Sbjct: 476 RSGTGGDLVQTCTNPLDSFFPFDPYILKRSKK 507
>gi|351712249|gb|EHB15168.1| RNA polymerase I-specific transcription initiation factor RRN3
[Heterocephalus glaber]
Length = 704
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 145/551 (26%), Positives = 230/551 (41%), Gaps = 103/551 (18%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRA-LLETSLKALSGAVSYIDISHHESL 87
VRE L + G+ +++ L + DPD + + L +++Y+ E L
Sbjct: 102 VREVLLKYKKGETNDFELLKNQLS-----DPDIKDDQIINWLLEFRSSITYL-TKDFEQL 155
Query: 88 LVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPH 147
+ + + N V++ + +L ++ ++ CL+M+ S+ PP +
Sbjct: 156 ISILLRLPWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHLVPPRVITKEGDIDV 215
Query: 148 GLERKHQ-----VLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYM 202
+ H AL+ I VP P L+P++V++ P V L+ Y+
Sbjct: 216 SDSDDEDDNLPAIFDTCHRALQIIARYVPSTPWFLMPMLVEKFPFVRKSERTLE---CYV 272
Query: 203 ENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHD-----------DFSKGIF 251
N L++ S +R +L VV++L+ LD+ DI D +G+F
Sbjct: 273 HNLLRI--SVYFPTLRHEILELVVEKLLRLDVNASRQDIEDAEETAAQACGGADSMEGLF 330
Query: 252 EMELEDVE---EAADDAEQVGDELP-----------------------SGSL---SRKSL 282
M+ ED E E EQ+G + G + K L
Sbjct: 331 NMD-EDEEAEHETKAGPEQLGQMVHPVAERLDVLLSLLLSYIKDVCYVDGKIEINKTKDL 389
Query: 283 SGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSG 342
+LIA + D L++ T SC ++F MFY C+ F A+ F+
Sbjct: 390 YRDLIA-IFDKLLLPTHA---SCH-----VQFFMFYLCS---------FKLGFAEAFLEH 431
Query: 343 LY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDIN 394
L+ P + R +A +Y+ SFL+RA+F+ + S L LVDW Y N D
Sbjct: 432 LWKKLQDPNNPAIIRQAAGNYIGSFLARAKFVPLITVKSCLDLLVDWLHLYLN--NQDSG 489
Query: 395 PKA------HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP---LETVLKHDLNPL 445
KA H FYS CQA+ Y FR + ++D LK L + E ++ LNPL
Sbjct: 490 AKAFCDVALHGPFYSACQAVFYTFVFRHKQLLD-GNLKEGLRYLQSLNFERIVMSQLNPL 548
Query: 446 KVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER-------LDMFFPF 498
K+CLPSVV+ F + +L N+ + R GG + LD FFPF
Sbjct: 549 KICLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVIRNTGGGDSVQTCTNPLDTFFPF 608
Query: 499 DPCLLKKSDRF 509
DPC+LK+S +F
Sbjct: 609 DPCVLKRSKKF 619
>gi|402907732|ref|XP_003916621.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 isoform 2 [Papio anubis]
Length = 621
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 136/550 (24%), Positives = 229/550 (41%), Gaps = 104/550 (18%)
Query: 30 REALTSVQSGDNDNYNQLV-AVMHLSGRLDPDNRALLETSLKALSGAVSYIDISHHESLL 88
R ++++++ +ND +N + G + E LK G + ++ ++ L
Sbjct: 28 RTGISNMRALENDFFNSPPRKTVRFGG-------TVTEVLLKYKKGETNDFELLKNQLLD 80
Query: 89 VSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHG 148
I + N V++ + +L ++ ++ CL+M+ S+F PP + +
Sbjct: 81 PDIKRLPWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGDVDVS 140
Query: 149 LERKHQV-----LSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYME 203
H AL+ I VP P L+PI+V++ P V L+ Y+
Sbjct: 141 DSEDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLE---CYVH 197
Query: 204 NTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILH-----------DDFSKGIFE 252
N L++ S +R +L ++++L+ LD+ DI D ++G+F
Sbjct: 198 NLLRI--SVYFPTLRHEILELIIEKLLKLDVNASRQDIEDAEETATQTCGGTDSTEGLFN 255
Query: 253 MELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLES-CEGTGRL 311
M D+ E+ + +G +R + +AE LD LM L +++ C G++
Sbjct: 256 M---------DEDEETEHDTKAGP-ARLDQMVHPVAERLDILMSLVLSYMKDVCYVDGKV 305
Query: 312 ----------------------------IEFVMFYACALDPENCGLRFATMLADVFVSGL 343
++F MFY C+ F A+ F+ L
Sbjct: 306 DNSKTKDLYRDLINIFDKLLLPTHASCHVQFFMFYLCS---------FKLGFAEAFLEHL 356
Query: 344 Y--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINP 395
+ P + R +A +Y+ SFL+RA+F+ + S L LV+W Y N D
Sbjct: 357 WKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLLVNWLHIYLN--NQDSGT 414
Query: 396 KA------HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP---LETVLKHDLNPLK 446
KA H FYS CQA+ Y FR + ++ LK L + E ++ LNPLK
Sbjct: 415 KAFCDVALHGPFYSACQAVFYTFVFRHKQLLS-GNLKEGLRYLQSLNFERIVMSQLNPLK 473
Query: 447 VCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER-------LDMFFPFD 499
VCLPSVV+ F + +L N+ + R+ G + LD FFPFD
Sbjct: 474 VCLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQTCTNPLDTFFPFD 533
Query: 500 PCLLKKSDRF 509
PC+LK+S +F
Sbjct: 534 PCVLKRSKKF 543
>gi|226499924|ref|NP_001140484.1| uncharacterized protein LOC100272544 [Zea mays]
gi|194699684|gb|ACF83926.1| unknown [Zea mays]
Length = 195
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/101 (63%), Positives = 77/101 (76%)
Query: 409 MYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTV 468
MYVLCFR+RSIMD P LK QL M + +L H L PLKVCLPS+V+EFL+Q+ AA LF
Sbjct: 1 MYVLCFRLRSIMDYPNLKQQLFRMRIRDILVHPLQPLKVCLPSIVNEFLRQATAASLFHA 60
Query: 469 SETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
+ D +ES+LS+AFGGL RLDMFFPFDP LLK+SDR+
Sbjct: 61 PAISMHEDAVESDLSKAFGGLNRLDMFFPFDPYLLKESDRY 101
>gi|221131114|ref|XP_002161101.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Hydra magnipapillata]
Length = 546
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 133/514 (25%), Positives = 228/514 (44%), Gaps = 73/514 (14%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRALLETSLKALSGAVSYIDISHHESLL 88
V + ++ + SGD + ++ L+A + L+ + D +++ + VSYI+ HE+L+
Sbjct: 10 VFQGISGLNSGDRNQFDVLLAAL-LNKNISND---IIKEYIVEFRKMVSYIN-KDHETLI 64
Query: 89 VSIFGMSMWN-YDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPH 147
+ + WN YD + + L ++ Y+ SC+ L+ P + D
Sbjct: 65 GVLLKLD-WNLYDSEFACLFSSFLTELVSAKPYYLKSCVKRLIQQLVPKTEVFDA----- 118
Query: 148 GLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLK 207
E HAALK+I L P++ + I P + + L +I Y+ N L+
Sbjct: 119 EFEHLKITFDYAHAALKAISILAPISLKYISEIFTSNFPYIE---KSLFVIKYYILNALQ 175
Query: 208 LESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAADDAEQ 267
L + M E R ++L ++++++ +D+ I + E + ED+ + DD +
Sbjct: 176 L-TLYMKE-TRLSILSLIIEKMLSIDVRI----------PRASLENQGEDILQFEDDDLK 223
Query: 268 VGDE-------------------LPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGT 308
+E + S L+ L + EL L+ L FE++
Sbjct: 224 SSNEHNNDRVLKLDKLMMILFTFIQSSCLNDGVLVFDTANELSKDLL-LVFENVILKTQQ 282
Query: 309 GRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPP----LTRMSAVSYLASFLSRAR 364
++F++FY +L+ F D + L P + R ++VSY+ASFL+RA+
Sbjct: 283 SSHVQFIIFYFASLNK-----HFYEEFLDCCWTILKNPNKAVIIRQASVSYIASFLARAK 337
Query: 365 FLSPCFIVSLLKRLVDWCLEYCNILGGDINP-----KAHRVFYSGCQAIMYVLCFRMRSI 419
F+ I +K+L DW L Y I D N K H FYS CQA+ YV + ++I
Sbjct: 338 FVDQKVIREQMKKLSDWILRY--IEHQDSNHAVAEIKKHGAFYSACQALFYVFIYNYKTI 395
Query: 420 MDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTV--SETFVFNDL 477
+ + ++ LNPLK C+ +VVS F ++ RL+ V + + +
Sbjct: 396 FETSNGIEFAKSLNFSRIIFSRLNPLKFCMETVVSYF---ARITRLYEVVFCYSIIERNN 452
Query: 478 LESELSRAFGGL-----ERLDMFFPFDPCLLKKS 506
S S +FG +L+MFFPFDP LL KS
Sbjct: 453 RNSLASFSFGNNNISSDNQLEMFFPFDPYLLPKS 486
>gi|296424575|ref|XP_002841823.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638072|emb|CAZ86014.1| unnamed protein product [Tuber melanosporum]
Length = 618
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 135/531 (25%), Positives = 231/531 (43%), Gaps = 62/531 (11%)
Query: 17 DVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLS-GRLDPDNRALLETSLKALSGA 75
++N ++ V AL +G N N+ L G D + L+ ++ AL+
Sbjct: 64 EINATNSLFRKFVNNALDERAAGSNANFELLRRKFSADPGNEDAPSSLELQNTILALTNT 123
Query: 76 VSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTP 135
VS ++ S + L+ I + + + L+ +L +++ Y+D + MLV +
Sbjct: 124 VSRLNGSCSQ-LVEDIINCQWVARESGFVVSYVKLLGNLVSAHSNYMDLIVNMLVQHLVW 182
Query: 136 PSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAP-TRLLPIVVQRMPTVHNKHER 194
+L H ++ + RVH AL+ I DLVP A + L P ++ P +K E
Sbjct: 183 LRSSAGQLPN-HTPVKRSVIYERVHYALQFILDLVPTAAFSTLFPALISEFP---HKSES 238
Query: 195 LKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWD-DILHDD----FSKG 249
K V Y+ N L++ A +R+ LL + DR+I +D EI D D L D+
Sbjct: 239 KKAHVTYVTNLLRVIEYAPS--LRNKLLTFITDRVIKIDTEIQADLDDLEDEQGEELEAE 296
Query: 250 IFEMELEDVEEAADDAEQVGDELP----------SGSLSRKSLSG---------NLIAEL 290
I E E+E + + + D+L S S KS+ LI L
Sbjct: 297 ITETEMERNGDMVTNIKDTVDKLDVMLDLLFSYYSKSFPNKSVESPTQESIENFTLIMRL 356
Query: 291 LDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRM 350
+S+++ T+ R +F++F+A P A + + + L P TR
Sbjct: 357 FNSIILPTYR--------SRYTQFLVFWAAQKAPRFSDTFCAAAITNALDNALQPG-TRQ 407
Query: 351 SAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCN-----ILGGDINPKAHRVFYSGC 405
+A +Y+ASF++RA+ + ++ + W + + G D++ FYS C
Sbjct: 408 AAAAYVASFIARAKLMPGQYVQMATNVMCRWLGTFVDERSAECEGPDVSKWGG--FYSVC 465
Query: 406 QAIMYVLCFRMRSIMDIPRLKSQLL-------LMPLETVLKHDLNPLKVCLPSVVSEFLQ 458
QA+MY+ CFR + + + + ++ L L + NPLKVC P+VV F
Sbjct: 466 QAVMYIFCFRWKDLRVVEEDEFGIIGERWMGFLQDLNKAIISKFNPLKVCSPAVVETF-- 523
Query: 459 QSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
+K A F + F ++E + E LD +FPFDP L++S ++
Sbjct: 524 -AKIASYFQLVYCFT---IIEQNKRKGLSSQEELDSYFPFDPYNLRRSKQW 570
>gi|147777696|emb|CAN73685.1| hypothetical protein VITISV_019843 [Vitis vinifera]
Length = 1337
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 68/119 (57%), Positives = 88/119 (73%), Gaps = 3/119 (2%)
Query: 115 AASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAP 174
AAS+G Y+D CL MLVSNF PP FLD LK+ GL RK QVLSRVH+ + I DLVPL P
Sbjct: 1105 AASSGNYLDGCLDMLVSNFMPPYSFLDLLKQSRGLARKDQVLSRVHSTSEDISDLVPLVP 1164
Query: 175 TRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLD 233
+RL+P V+QRMP V + +IV+++EN L+LES A+ ELV +L+A++DRL+DLD
Sbjct: 1165 SRLVPKVIQRMPNVFTEE---PLIVLHVENMLRLESGAIQELVGKMMLVAMMDRLVDLD 1220
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/33 (72%), Positives = 28/33 (84%)
Query: 312 IEFVMFYACALDPENCGLRFATMLADVFVSGLY 344
++FVMFYACALDPENCG+RFA MLAD FV +
Sbjct: 1219 LDFVMFYACALDPENCGVRFARMLADFFVCSTF 1251
>gi|149592042|ref|XP_001518561.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3, partial [Ornithorhynchus anatinus]
Length = 660
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 146/554 (26%), Positives = 236/554 (42%), Gaps = 111/554 (20%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNR-ALLETSLKALSGAVSYI--DISHHE 85
V + L + GD ++ L + DPD + A + L +V Y+ D H
Sbjct: 65 VTDILQKYKKGDTKDFELLKHQLS-----DPDIKDAQILNWLLEFRTSVIYLTKDFEH-- 117
Query: 86 SLLVSIFGMSMW-NYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLK 144
LVSI W +V++ + +L ++ ++ SCL+M+VS+F PP + +
Sbjct: 118 --LVSILLKLPWLTRSQEVVEEYLYFLSNLVSAQTVFLRSCLSMIVSHFVPPRILIKEGD 175
Query: 145 EPHGLERKHQV-----LSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIV 199
H AL+ I VP P L+ I+V++ P + K ER +
Sbjct: 176 VDISDSDDEDENLPANFDTCHRALQIIAGYVPSTPWFLMQILVEKFPFI-TKSER--TLE 232
Query: 200 VYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDI-----------LHDDFSK 248
Y+ N L++ S +R +L +V++L+ +D+ DI D +
Sbjct: 233 CYVHNLLRI--SVYFPSLRHEILELIVEKLLKMDVGASRQDIDDAEETAAQTDYAADARE 290
Query: 249 GIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLES-CEG 307
G+FEM+ +D E GD G+ R + +AE LD L+ + F +++ C
Sbjct: 291 GLFEMD--------EDEETNGDV--KGTSFRSDQMAHPLAERLDILLSVLFSYIKDVCYV 340
Query: 308 TGRL----------------------------IEFVMFYACALDPENCGLRFATMLADVF 339
G + ++ MFY C+ F A+ F
Sbjct: 341 NGEIDINKTKDLYRDLIAIFDKLVLPTHASCHTQYFMFYICS---------FKLGFAEAF 391
Query: 340 VSGLY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGG 391
+ L+ P + R +A SY+ S L+RA+F+ + + L LV+W Y +
Sbjct: 392 LEHLWKKLQNPNNPAVLRQAAGSYIGSLLARAKFIPIITVKACLDLLVNWLHNYLD--DQ 449
Query: 392 DINPKA------HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPL--ETVLKHDLN 443
D+ KA H FYS CQAI Y L FR + ++D K L L E ++ LN
Sbjct: 450 DVGTKAFCDVTLHGPFYSACQAIFYTLVFRHKQLLDGSLRKGLAYLQSLNFERLVMCQLN 509
Query: 444 PLKVCLPSVVSEFLQQSKAARL---FTVSETFVFNDLLESELSRAFGG------LERLDM 494
PLK+CLP+VV+ F ++ +L +T+ E N + + + GG LD
Sbjct: 510 PLKICLPTVVNLFAAITRKYQLVFCYTIIER--NNRQMLPVIRSSVGGDSVQTCTNPLDS 567
Query: 495 FFPFDPCLLKKSDR 508
FFPFDPC+LK+S +
Sbjct: 568 FFPFDPCVLKRSKK 581
>gi|363739454|ref|XP_003642174.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 isoform 1 [Gallus gallus]
Length = 619
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 128/508 (25%), Positives = 223/508 (43%), Gaps = 73/508 (14%)
Query: 58 DPDNR-ALLETSLKALSGAVSYIDISHHESLLVSIFGMSMW-NYDPDVMDALKGLIISLA 115
DPD + A + L +V+Y+ + LVSI W +V++ G + +L
Sbjct: 46 DPDIKDAQIINWLHEFRSSVAYLTKDFEQ--LVSILLKLPWLRRSREVVEEYLGFLGNLV 103
Query: 116 ASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERK-----HQVLSRVHAALKSIFDLV 170
++ ++ CL+M+VS F PP + + + H AL+++ V
Sbjct: 104 SAQTVHLRPCLSMIVSQFVPPRIIIREDDVDISDSDDDEENLSENFDTCHRALQTVAKYV 163
Query: 171 PLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLI 230
P L+PI+V++ P + NK ER + Y+ N L++ + +R +L +V++L+
Sbjct: 164 PSTLQFLMPILVEKFPFI-NKSER--TLECYVHNLLRV--TVYLPTLRLQILELIVEKLL 218
Query: 231 DLDMEIGWDDILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAEL 290
LD+ DI + + + E + EE D E+ + + + +AE
Sbjct: 219 KLDVSTPQQDIEDAEEAANNSDSEEKSTEEGLFDMEEDEERKENKVSPSSERMAHPLAER 278
Query: 291 LDSLMVLTFEHLES-CEGTGRL----------------------------IEFVMFYACA 321
LD LM + F +++ C G+L +++ +F+ C+
Sbjct: 279 LDILMTILFAYIKDVCHVDGKLDINKTKDLYRDLVSVFDKLILPTHASCHVQYFIFHICS 338
Query: 322 LDPENCGLRFATMLADVFVSGLY--------PPLTRMSAVSYLASFLSRARFLSPCFIVS 373
L + LA+ F+ L+ P + R +A SY+ SFL+RA+F+ + +
Sbjct: 339 L---------KSGLAEAFLDHLWKKLQDPNNPSVIRQTAGSYIGSFLARAKFIPVVTVKA 389
Query: 374 LLKRLVDWCLEYCNILGGDINPKA----HRVFYSGCQAIMYVLCFRMRSIMD--IPRLKS 427
L LV+W +Y + N H FYS CQA Y L FR + ++D + + S
Sbjct: 390 CLDLLVNWMHKYIDNQDTGANAYCDVALHGPFYSACQAAFYTLIFRHKQLLDGNLRKGLS 449
Query: 428 QLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFG 487
L + E ++ LNPLK+C+PSVV+ F ++ +L N+ + R+
Sbjct: 450 YLQSLNFERIVMCQLNPLKICIPSVVNLFAAITRKYQLVFCYTIIERNNRQFIPVVRSGT 509
Query: 488 G-------LERLDMFFPFDPCLLKKSDR 508
G LD FFPFDP +LK+S +
Sbjct: 510 GGDFVQMCTNPLDSFFPFDPYVLKRSKK 537
>gi|301765376|ref|XP_002918109.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Ailuropoda melanoleuca]
Length = 651
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 134/486 (27%), Positives = 203/486 (41%), Gaps = 85/486 (17%)
Query: 88 LVSIFGMSMW-NYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFL------ 140
L+SI W N V++ + +L ++ ++ CL+M+VS F PP +
Sbjct: 109 LISILLRLQWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIVSYFVPPRVVIKEGDVN 168
Query: 141 --DKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMI 198
D E L H AL+ I VP P L+PI+V++ P V L+
Sbjct: 169 VSDSDDEDDNLPGN---FDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLE-- 223
Query: 199 VVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDI-----------LHDDFS 247
Y+ N L++ S +R +L V+++L+ LD+ DI D +
Sbjct: 224 -CYVHNLLRI--SVYFPTLRHEILELVIEKLLKLDVNASRQDIEDAEDAAMQAGRGSDAA 280
Query: 248 KGIFEM-ELEDVEEAADDAEQVGDELPSGSLSR-------------------KSLSGNLI 287
+G+F M E ED E A Q D + R + N
Sbjct: 281 EGLFSMDEDEDTEHDAKADVQRLDHMVHPVAERLDILLSLLLSYIKDVCYIDGKVDNNKT 340
Query: 288 AELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLY--- 344
+L L+ + F+ L ++F MFY C+ F A+ F+ L+
Sbjct: 341 KDLYRDLITI-FDKLLLPTHASCHVQFFMFYLCS---------FKLGFAEAFLEHLWKKL 390
Query: 345 -----PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA-- 397
P + R +A +Y+ SFL+RA+F+ + S L LV+W Y N D KA
Sbjct: 391 QDPNNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLLVNWLHIYLN--NQDSGTKAFC 448
Query: 398 ----HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP---LETVLKHDLNPLKVCLP 450
H FYS CQA+ Y FR + ++ LK L + E ++ LNPLK+CLP
Sbjct: 449 DVALHGPFYSACQAVFYTFVFRHKQLLS-GNLKEGLRYLQSLNFERIVMSQLNPLKICLP 507
Query: 451 SVVSEFLQ-QSKAARLFTVSETFVFNDLLESELSRAFGG------LERLDMFFPFDPCLL 503
+VV+ F SK +F + N + + GG LD FFPFDPC+L
Sbjct: 508 AVVNFFAAITSKYQLVFCYTIIERNNRQMLPVIRNTAGGDSVQTCTNPLDTFFPFDPCVL 567
Query: 504 KKSDRF 509
K+S +F
Sbjct: 568 KRSKKF 573
>gi|334333090|ref|XP_001375091.2| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 [Monodelphis domestica]
Length = 651
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 140/546 (25%), Positives = 233/546 (42%), Gaps = 91/546 (16%)
Query: 31 EALTSVQSGDNDNYNQLVAVMHLSGRLDPDNR-ALLETSLKALSGAVSYIDISHHESLLV 89
+ L + GD +++ L + DPD + A + L +V+Y+ E L+
Sbjct: 56 DILLKYKKGDTNDFELLKHQLS-----DPDIKDAQIINWLLEFRNSVTYL-TKDFEQLIS 109
Query: 90 SIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFL--------D 141
+ + +V++ + +L ++ ++ CL+M+VS+F P + D
Sbjct: 110 ILLKLPWLKRSQEVLEEYLAFLGNLVSAQTVFLRPCLSMIVSHFIPSRVIIKEGDVTISD 169
Query: 142 KLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVY 201
E L H AL+ I VP P L+PI+V++ P + K ER+ + Y
Sbjct: 170 SDDEDDNLPAN---FDTCHRALQLIARYVPSTPWFLMPILVEKFPFIR-KSERI--LECY 223
Query: 202 MENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDI--LHDDFSKGIFEMELEDVE 259
+ N L++ S +R +L V+++L+ +D+ DI D I E + VE
Sbjct: 224 VHNLLRI--SVYFPTLRPEILELVIEKLLKIDVSASRQDIEDAEDARETAIQTDETDTVE 281
Query: 260 E--AADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLES-CEGTGRL----- 311
D+ E+ DE S ++ + +AE LD L+ L F +++ C G +
Sbjct: 282 RLFNMDEDEEPKDETKDISGKNDEMA-HPVAERLDILLSLLFSYIKDVCYKNGEIDINKT 340
Query: 312 -----------------------IEFVMFYACALDPENCGLRFATMLADVFVSGLY---- 344
I+F MFY C+ F + F+ L+
Sbjct: 341 KDLYRDLLGIFDKLVLPTHASCHIQFFMFYLCS---------FKLGFTEAFLEHLWKKLQ 391
Query: 345 ----PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA--- 397
P + R +A +Y+ S L+RA+F+ + + L LV+W Y + D KA
Sbjct: 392 NPNNPAILRQAAGNYIGSLLARAKFIPIITVKACLDLLVNWLHIYLD--NQDTGTKAFCD 449
Query: 398 ---HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPL--ETVLKHDLNPLKVCLPSV 452
H FYS CQA+ Y FR + ++D + L L E ++ LNPLK+CLPSV
Sbjct: 450 VALHGPFYSACQAVFYTFIFRHKQLLDGNLREGLAYLQSLNFERIVMSQLNPLKICLPSV 509
Query: 453 VSEFLQQSKAARLFTVSETFVFND--LLESELSRAFGG-----LERLDMFFPFDPCLLKK 505
V+ F ++ +L N+ +L + A GG LD FFPFDPC+LK+
Sbjct: 510 VNLFAAITRKYQLVFCYTIIERNNRQMLPVLRNTAGGGSVQTCTNPLDTFFPFDPCVLKR 569
Query: 506 SDRFAN 511
S + +
Sbjct: 570 SKKIVD 575
>gi|443692852|gb|ELT94357.1| hypothetical protein CAPTEDRAFT_221291 [Capitella teleta]
Length = 567
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 125/528 (23%), Positives = 230/528 (43%), Gaps = 80/528 (15%)
Query: 27 YHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNR-ALLETSLKALSGAVSYIDISHHE 85
Y V L ++ G + YN L L+ +P +L+ L VS + +
Sbjct: 11 YDVLVILNEMKEGKSKRYNLL-----LNQFSNPQTSPQFYMAALQGLKDCVSVLR-QEFD 64
Query: 86 SLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTP---PSYFLDK 142
+++ ++ M +V+ K LI+ L A++ Y++ CL M+V +FTP PS +DK
Sbjct: 65 AVVGTLLKMDWLKQTAEVITLYKALILDLIAAHTYYLNPCLRMIVLSFTPKILPSD-IDK 123
Query: 143 LKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYM 202
++ H Q +H L+S+ +VP+A L+P++ + P + + + Y
Sbjct: 124 IQGDHIRTANEQAFLHLHDLLQSLSKIVPMATRALIPLMAECQPYLKKSAYQQE---CYF 180
Query: 203 ENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAA 262
N LK+ + +RST+L ++DRL+ LD+ + I ++ EE
Sbjct: 181 RNLLKI--TGYAPTLRSTVLTIIIDRLMKLDVCASREAI--------------QEAEENT 224
Query: 263 DDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLE------------SCEGTGR 310
+A+ +L + + A+ LD +M L ++ C+ R
Sbjct: 225 TEAQMFAMDLNEEKIVEVKPMQHAEADRLDQIMHLLLYYIHFVCYEKDELKWTECKTIFR 284
Query: 311 LI-----------------EFVMFYACALDPENCGLRFATMLADVFVSGLYPPLT----- 348
+ +F MFY C+ F +L + F+ L+ +
Sbjct: 285 ELLTVFDKIVVKTYASSHTQFFMFYICS---------FNDLLVEGFLDYLWKRVQNPSHG 335
Query: 349 ---RMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDI--NPKAHRVFYS 403
R ++V+Y+ASF++RA++++ + + L LV W Y + + + H FYS
Sbjct: 336 MVFRQASVAYMASFIARAKYVNGSSVTACLDLLVAWIHNYIKNSSDSVKVDIEHHGTFYS 395
Query: 404 GCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAA 463
CQA+ Y+L FR + ++ + ++ L+T++ LNPLK CLP + + F+ ++
Sbjct: 396 VCQALFYILVFRHKELLASSKGVKRVQGFNLQTIVTCRLNPLKFCLPIIANTFVSIARIH 455
Query: 464 RLFTVSETFVFNDLLESELSRAFGGLER--LDMFFPFDPCLLKKSDRF 509
+L N ++ ++ LD FFPFDP +L +S F
Sbjct: 456 QLAFCDTVMEKNRRQHLPIAAQDKMMQHNPLDSFFPFDPYILTRSKDF 503
>gi|73959061|ref|XP_536965.2| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 [Canis lupus familiaris]
Length = 651
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 131/483 (27%), Positives = 201/483 (41%), Gaps = 79/483 (16%)
Query: 88 LVSIFGMSMW-NYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEP 146
L+SI W N V++ + +L ++ ++ CL+M+VS F PP + +
Sbjct: 109 LISILLRLQWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIVSYFVPPRVVIKEGDVD 168
Query: 147 HGLERKHQV-----LSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVY 201
H AL+ I VP P L+PI+V++ P V L+ Y
Sbjct: 169 VSDSDDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLE---CY 225
Query: 202 MENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILH-----------DDFSKGI 250
+ N L++ S +R +L V+++L+ LD+ DI D ++G+
Sbjct: 226 VHNLLRI--SVYFPNLRHEILELVIEKLLKLDVNASRQDIEDAEEAAIQTGSGPDATEGL 283
Query: 251 FEM-ELEDVEEAADDAEQVGDELPSGSLSR-------------------KSLSGNLIAEL 290
F M E ED E +Q D + R + N +L
Sbjct: 284 FNMDEDEDTERDTKADQQRLDHMVHPVAERLDILLSLLLSYIKDVCYVDGKVDNNKTKDL 343
Query: 291 LDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLY------ 344
L+ + F+ L ++F MFY C+ F A+ F+ L+
Sbjct: 344 YRDLITI-FDKLLLPTHASCHVQFFMFYLCS---------FKLGFAEAFLEHLWKKLQDP 393
Query: 345 --PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA----- 397
P + R +A +Y+ SFL+RA+F+ + S L LV+W Y N D KA
Sbjct: 394 NNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLLVNWLHIYLN--NQDSGAKAFCDVA 451
Query: 398 -HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP---LETVLKHDLNPLKVCLPSVV 453
H FYS CQA+ Y FR + ++ LK L + E ++ LNPLK+CLPSVV
Sbjct: 452 LHGPFYSACQAVFYTFVFRHKQLLS-GNLKEGLRYLQSLNFERIVMSQLNPLKICLPSVV 510
Query: 454 SEFLQ-QSKAARLFTVSETFVFNDLLESELSRAFGG------LERLDMFFPFDPCLLKKS 506
+ F SK +F + N + + GG LD FFPFDPC+LK+S
Sbjct: 511 NFFAAITSKYQLVFCYTIIERNNRQMLPVIRNTAGGDSVQTCTNPLDTFFPFDPCVLKRS 570
Query: 507 DRF 509
+F
Sbjct: 571 KKF 573
>gi|195998610|ref|XP_002109173.1| hypothetical protein TRIADDRAFT_52940 [Trichoplax adhaerens]
gi|190587297|gb|EDV27339.1| hypothetical protein TRIADDRAFT_52940 [Trichoplax adhaerens]
Length = 610
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 131/528 (24%), Positives = 236/528 (44%), Gaps = 73/528 (13%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGRLDPDN--RALLETSLKALSGAVSYIDISHH-E 85
+ +AL + + G +Y+ +V +L DN + LK+L + DI+H E
Sbjct: 29 IHKALENKKKGLQKDYDWIV------HQLSQDNMDAQIFYRWLKSLRYCTT--DINHKCE 80
Query: 86 SLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGK-YVDSCLTMLVSNFTPPSYFLDKLK 144
SL+ + + + + ++D G + L + Y+D CL ML+++F + D +
Sbjct: 81 SLVNATLKIKWIDREESLLDLYIGWLADLVTVHTSFYLDPCLRMLINHFMSSN---DSRE 137
Query: 145 EPHGLERKHQVL--SRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYM 202
G + + +VH A++++ LVP + TRL+PI+ P+ +++ L V Y+
Sbjct: 138 LTVGENQSFDIFGNKQVHRAMQTVLHLVPSSQTRLIPILTHYFPS---EYKPLDQYVYYV 194
Query: 203 ENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWD------DILHDDFSKGIFEMELE 256
N L+L A G +RS +L V +L+ +D+E+ D I DD + ++E+
Sbjct: 195 SNLLRLTVYAPG--LRSQILELTVHKLVKVDVEVSRDSINKINQIFADDEMQFDVDLEMN 252
Query: 257 DVEEAAD------DAEQVGDELPSGSLS------------------RKSLSGNLIAELLD 292
D A D +Q+ + LS +S + L +LL
Sbjct: 253 DSNSADKLAVLPRDLQQIANLADKLDLSMSIFLSYISIICYQQGKFDQSAASLLFTDLLT 312
Query: 293 SLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSA 352
+ + + C I+F +F C+ D E + + + F P + R ++
Sbjct: 313 AFDTIILPTHDICH-----IQFYLFVTCSYDEEFVK-QMLHLCWNKFEDTNVPAVLRQTS 366
Query: 353 VSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYC----NILGGDINPKAHRVFYSGCQAI 408
V+Y+ASF++RA+F+ I + ++ W Y N DI+ H +FYS CQ +
Sbjct: 367 VAYIASFVARAKFVPLRIINTCIEIFCTWIHRYLDEHGNCTTADID--THCLFYSACQCL 424
Query: 409 MYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTV 468
Y++ F+ ++M K L L+ ++ LNPL+ C+P +V +F +
Sbjct: 425 FYMIVFKHENLMADEEGKKLLNRGGLQRIVTSKLNPLRFCMPILV-KFFAAITSEHELVY 483
Query: 469 SETFVFNDLLESELSRAFGGLE--------RLDMFFPFDPCLLKKSDR 508
T + ++ E + FGG + +LD FFPFDP LL +S +
Sbjct: 484 CYTIIESNKREQLPTALFGGDKQLTRDINNQLDTFFPFDPYLLSRSAK 531
>gi|301616570|ref|XP_002937728.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Xenopus (Silurana) tropicalis]
Length = 613
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 127/499 (25%), Positives = 222/499 (44%), Gaps = 80/499 (16%)
Query: 69 LKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTM 128
L ++Y+ +E L+ + + N +V++ + +L ++ Y+ SCL+M
Sbjct: 59 LHEFRSCITYL-TKDYEQLVSIVLKLPWLNRSKEVVEEYLSFLGNLVSAQTVYLRSCLSM 117
Query: 129 LVSNFTPPSYFL-----DKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQ 183
++S+F P + D E + H AL+ I VP AP L+PI+V+
Sbjct: 118 IISHFVPARVIIRDGDVDISDSDDEDEDIISTFNTCHRALQIIAKYVPSAPRFLMPILVE 177
Query: 184 RMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILH 243
+ P NK R + Y+ N L++ S +R +L VV++L+ +D+ +I
Sbjct: 178 KFPYT-NKSAR--TLECYVHNLLRI--SIYFPTLRLEILELVVEKLLKMDVSASRQNIEE 232
Query: 244 DDFS--KGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEH 301
+ S +G E ++ EE + ++ E+ + S+ ++++ + +AE LD L++ +
Sbjct: 233 AEESAYQGGGE---QNKEEGLFNMDEDLQEMTTTSVVNETMA-HPVAERLDILILTLCSY 288
Query: 302 LES-CEGTGRL----------------------------IEFVMFYACALDPENCGLRFA 332
++ C G L +++ MFY C+ F
Sbjct: 289 IKDVCLTNGALDLNKTKDMYRDLLAVFDKLILPTHASCHVQYFMFYICS---------FR 339
Query: 333 TMLADVFVSGLY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLE 384
+A+ FV L+ PP+ R +A +Y+ SFL+RA+F+ + + L LV+W
Sbjct: 340 LGIAEAFVEHLWKKLQNPNNPPVIRQAAANYIGSFLARAKFIPLVTVKACLDLLVNWLHG 399
Query: 385 YCNILGGDINPKA------HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLL--MPLET 436
Y I D +A H FY+ CQA+ Y FR ++ K L + LE
Sbjct: 400 Y--IDNQDAGSRAYCDVTVHGPFYAACQAVFYSFIFRHNQFLEGNMRKGLAYLQNLNLER 457
Query: 437 VLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGG-------L 489
++ LNPLK+CLPSVV+ F ++ +L N+ + R+ G
Sbjct: 458 IVMCQLNPLKICLPSVVNFFAAITRKYQLVFCYTIIERNNRQMIPIIRSSTGGDSVQVSF 517
Query: 490 ERLDMFFPFDPCLLKKSDR 508
LD FFPFDPC+LK+ +
Sbjct: 518 NPLDSFFPFDPCILKRCKK 536
>gi|326928812|ref|XP_003210568.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Meleagris gallopavo]
Length = 616
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 131/512 (25%), Positives = 228/512 (44%), Gaps = 80/512 (15%)
Query: 58 DPDNR-ALLETSLKALSGAVSYIDISHHESLLVSIFGMSMW-NYDPDVMDALKGLIISLA 115
DPD + A + L +V+Y+ + LVSI W +V++ G + +L
Sbjct: 46 DPDIKDAQIINWLHEFRSSVAYLTKDFEQ--LVSILLKLPWLRRSREVVEEYLGFLGNLV 103
Query: 116 ASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERK-----HQVLSRVHAALKSIFDLV 170
++ ++ CL+M+VS F PP + + + H AL+++ V
Sbjct: 104 SAQTVHLRPCLSMIVSQFVPPRITIREDDVDISDSDDDEENLSENFDTCHRALQTVAKYV 163
Query: 171 PLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLI 230
P L+PI+V++ P + NK ER + Y+ N L++ + +R +L +V++L+
Sbjct: 164 PSTLQFLMPILVEKFPFI-NKSER--TLECYVHNLLRV--TVYLPTLRLQILELIVEKLL 218
Query: 231 DLDMEIGWDDILHDDFSKGIFEMELEDVEEA----ADDAEQVGDELPSGSLSRKSLSGNL 286
LD+ DI + + + E + EE +D E+ +++ S S R + +
Sbjct: 219 KLDVSTPQQDIEDAEEAANNSDSEEKSTEEGLFDMEEDEERKENKVVSPSSERMA---HP 275
Query: 287 IAELLDSLMVLTFEHLES-CEGTGRL----------------------------IEFVMF 317
+AE LD LM + F +++ C G+L +++ +F
Sbjct: 276 LAERLDILMTILFAYIKDVCHVDGKLDINKTKDLYRDLVSVFDKLILPTHASCHVQYFIF 335
Query: 318 YACALDPENCGLRFATMLADVFVSGLY--------PPLTRMSAVSYLASFLSRARFLSPC 369
+ C+L LA+ F+ L+ P + R +A SY+ SFL+RA+F+
Sbjct: 336 HICSL---------KLGLAEAFLDHLWKKLQDPNNPSVIRQTAGSYIGSFLARAKFIPVV 386
Query: 370 FIVSLLKRLVDWCLEYCNILGGDINPKA----HRVFYSGCQAIMYVLCFRMRSIMD--IP 423
+ + L LV+W +Y + N H FYS CQA Y L FR + ++D +
Sbjct: 387 TVKACLDLLVNWMHKYIDNQDTGANAYCDVALHGPFYSACQAAFYTLIFRHKQLLDGNLR 446
Query: 424 RLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELS 483
+ S L + E ++ LNPLK+C+PSVV+ F ++ +L N+ +
Sbjct: 447 KGLSYLQSLNFERIVMCQLNPLKICIPSVVNLFAAITRKYQLVFCYTIIERNNRQFIPVV 506
Query: 484 RAFGG-------LERLDMFFPFDPCLLKKSDR 508
R+ G LD FFPFDP +LK+S +
Sbjct: 507 RSGTGGDFVQMCTNPLDSFFPFDPYVLKRSKK 538
>gi|348584950|ref|XP_003478235.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Cavia porcellus]
Length = 658
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 143/552 (25%), Positives = 233/552 (42%), Gaps = 105/552 (19%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRA-LLETSLKALSGAVSYIDISHHESL 87
V E L + G+ +++ L + DPD + + L ++ Y+ E L
Sbjct: 56 VTEVLVKYKKGETNDFELLKNQLS-----DPDIKDDQIINWLFEFRSSIMYL-TKDFEQL 109
Query: 88 LVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDK----- 142
+ + + N V++ + +L ++ ++ CL+M+ S+F PP + +
Sbjct: 110 ISILLKLPWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGDIDV 169
Query: 143 LKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYM 202
+ H AL+ I VP P L+PI+V++ P V L+ Y+
Sbjct: 170 SDSEDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLE---CYV 226
Query: 203 ENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILH-----------DDFSKGIF 251
N L++ S +R +L V+++L+ LD+ DI D +G+F
Sbjct: 227 HNLLRI--SVYFPTLRHEILELVIEKLLKLDVNASRQDIEDAEDTAAQACSGTDSMEGLF 284
Query: 252 EMELEDVE---EAADDAEQVGDELP-----------------------SGSLSR---KSL 282
M+ ED E EA EQ+G + G + K L
Sbjct: 285 NMD-EDEEPECEAKGTPEQLGQMVHPVAERLDILLSLLLSYVKDVCYVDGKIDNNKTKDL 343
Query: 283 SGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSG 342
+LIA + D L++ T SC ++F MFY C+ F A+ F+
Sbjct: 344 YRDLIA-IFDKLLLPTH---ASCH-----VQFFMFYLCS---------FKLGFAEAFLEH 385
Query: 343 LY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDIN 394
L+ P + R +A +Y+ SFL+RA+F+ + S L LV+W Y N D
Sbjct: 386 LWKKLQDPNNPAIIRQAAGNYIGSFLARAKFVPLITVKSCLDLLVNWLHIYLN--NQDSG 443
Query: 395 PKA------HRVFYSGCQAIMYVLCFRMRSIM--DIPRLKSQLLLMPLETVLKHDLNPLK 446
KA H FYS CQA+ Y FR + ++ ++ S L + + ++ LNPLK
Sbjct: 444 AKAFCDVALHGPFYSACQAVFYTFVFRHKQLLGSNLKEGLSYLQSLNFQRIVMSQLNPLK 503
Query: 447 VCLPSVVSEFLQQSKAARL---FTVSETFVFNDLLESELSRAFGG------LERLDMFFP 497
+CLPSVV+ F + +L +T+ E N + + GG LD FFP
Sbjct: 504 ICLPSVVNFFAAITNKYQLVFCYTIIER--NNRQMLPVIRNTAGGDSVQTCTNPLDTFFP 561
Query: 498 FDPCLLKKSDRF 509
FDPC+LK+S +F
Sbjct: 562 FDPCVLKRSKKF 573
>gi|395835621|ref|XP_003790775.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 isoform 1 [Otolemur garnettii]
Length = 650
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 138/542 (25%), Positives = 228/542 (42%), Gaps = 86/542 (15%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGRLDPD--NRALLETSLKALSGAVSYIDISHHES 86
V E L + G+ +++ L + + DPD + +L L+ S +S E
Sbjct: 56 VTEVLLKYKKGETNDFELLKSQLS-----DPDIKDDQILNWLLEFRSSIMSLT--KDFEQ 108
Query: 87 LLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEP 146
L+ + + V++ + +L ++ Y+ CL+M+ S+F PP + +
Sbjct: 109 LINILLRLPWLKRSQTVVEEYLAFLGNLVSAQTVYLRPCLSMIASHFVPPRVMIKEGDAD 168
Query: 147 HGLERKHQV-----LSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVY 201
H AL+ I VP P L+PI+V++ P + K ER+ + Y
Sbjct: 169 VSDSDDEDESLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFIR-KSERI--LECY 225
Query: 202 MENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDI-----------LHDDFSKGI 250
+ N L++ S +R +L +++RL+ LD+ DI + D ++G+
Sbjct: 226 VHNLLRI--SVYFPTLRHEILELIIERLLKLDVSASRQDIEDAEETATRTCVGTDSTEGL 283
Query: 251 FEMELEDVEEAADDAEQVGDEL--PSGS-----------------LSRKSLSGNLIAELL 291
F M+ ++ E A + DE+ P G + + N +L
Sbjct: 284 FNMDEDEETEHETKAPERPDEMVHPIGERLDLLLSLLLSYIKDVCYTDGKIDNNKTKDLY 343
Query: 292 DSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLY------- 344
L+ + F+ L ++F MFY C+ F A+ F+ L+
Sbjct: 344 RDLINI-FDKLLLPTHASCHVQFFMFYLCS---------FKLGFAEAFLEHLWKKLQDPN 393
Query: 345 -PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA------ 397
P + R +A +Y+ SFL+RA+F+ + S L LV+W Y N D KA
Sbjct: 394 NPAIIRQAAANYIGSFLARAKFIPLITVKSCLDLLVNWLHIYLN--NQDSGTKAFCDVAL 451
Query: 398 HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP---LETVLKHDLNPLKVCLPSVVS 454
H FYS CQA+ Y FR + ++ LK L + E ++ LNPLK+CLPSVV+
Sbjct: 452 HGPFYSACQAVFYAFVFRHKQLLS-GNLKEGLRYLQSLNFERIVMSQLNPLKICLPSVVN 510
Query: 455 EFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER-------LDMFFPFDPCLLKKSD 507
F + +L N + R G + LD FFPFDPC+LK+S
Sbjct: 511 FFAAITNKYQLVFCYTIIERNHRQMLPVIRNTAGGDSVQTCTNPLDTFFPFDPCVLKRSK 570
Query: 508 RF 509
+F
Sbjct: 571 KF 572
>gi|197101783|ref|NP_001126928.1| RNA polymerase I-specific transcription initiation factor RRN3
[Pongo abelii]
gi|75040988|sp|Q5R4N9.1|RRN3_PONAB RecName: Full=RNA polymerase I-specific transcription initiation
factor RRN3
gi|55733187|emb|CAH93277.1| hypothetical protein [Pongo abelii]
Length = 650
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 139/555 (25%), Positives = 226/555 (40%), Gaps = 112/555 (20%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRA-LLETSLKALSGAVSYIDISHHESL 87
V E L + G+ +++ L + LDPD + + + L +V Y+ +
Sbjct: 56 VTEVLLKYKKGETNDFELLKNQL-----LDPDIKDDQIISWLLEFRSSVMYLTKDFEQ-- 108
Query: 88 LVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPH 147
L+SI W V++ + +L ++ ++ CL M+ S+F PP + +
Sbjct: 109 LISIILRLPWLKSQTVVEEYLAFLANLVSAQTVFLRPCLGMIASHFVPPRVIIKEGDVDV 168
Query: 148 GLERKHQV-----LSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYM 202
H AL+ I VP P L+PI+V++ P V L+ Y+
Sbjct: 169 SDSDDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLE---CYV 225
Query: 203 ENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAA 262
N L++ S +R +L ++++L+ LD+ DI ED EE A
Sbjct: 226 HNLLRI--SVYFPTLRHEILELIIEKLLKLDVNASRQDI--------------EDAEETA 269
Query: 263 -------DDAEQVGDELPSGSLSRKSLSG--------NLIAELLDSLMVLTFEHLES-CE 306
D E + + ++ +G + +AE LD LM L +++ C
Sbjct: 270 TQTCGGTDSTEGLFNMDEDEETEHETKAGPERLDQMVHPVAECLDILMSLVLSYMKDVCY 329
Query: 307 GTGRL----------------------------IEFVMFYACALDPENCGLRFATMLADV 338
G++ ++F MFY C+ F A+
Sbjct: 330 VDGQVDNGKTKDLYRDLINIFDKLLLSTHASCHVQFFMFYLCS---------FKLGFAEA 380
Query: 339 FVSGLY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILG 390
F+ L+ P + R +A +Y+ SFL+RA+F+ + S L LV+W Y N
Sbjct: 381 FLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLITVRSCLDLLVNWLHIYLN--N 438
Query: 391 GDINPKA------HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP---LETVLKHD 441
D KA H FYS CQA+ Y FR + ++ LK L + E ++
Sbjct: 439 QDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLS-GNLKEGLRYLQSLNFEWIVMSQ 497
Query: 442 LNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER-------LDM 494
LNPLK+CLPSVV+ F + +L N+ + R+ G + LD
Sbjct: 498 LNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQTCTNPLDT 557
Query: 495 FFPFDPCLLKKSDRF 509
FFPFDPC+LK+S +F
Sbjct: 558 FFPFDPCVLKRSKKF 572
>gi|395835623|ref|XP_003790776.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 isoform 2 [Otolemur garnettii]
Length = 620
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 124/466 (26%), Positives = 200/466 (42%), Gaps = 77/466 (16%)
Query: 103 VMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQV-----LS 157
V++ + +L ++ Y+ CL+M+ S+F PP + +
Sbjct: 95 VVEEYLAFLGNLVSAQTVYLRPCLSMIASHFVPPRVMIKEGDADVSDSDDEDESLPANFD 154
Query: 158 RVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELV 217
H AL+ I VP P L+PI+V++ P + K ER+ + Y+ N L++ S +
Sbjct: 155 TCHRALQIIARYVPSTPWFLMPILVEKFPFIR-KSERI--LECYVHNLLRI--SVYFPTL 209
Query: 218 RSTLLMAVVDRLIDLDMEIGWDDI-----------LHDDFSKGIFEMELEDVEEAADDAE 266
R +L +++RL+ LD+ DI + D ++G+F M+ ++ E A
Sbjct: 210 RHEILELIIERLLKLDVSASRQDIEDAEETATRTCVGTDSTEGLFNMDEDEETEHETKAP 269
Query: 267 QVGDEL--PSGS-----------------LSRKSLSGNLIAELLDSLMVLTFEHLESCEG 307
+ DE+ P G + + N +L L+ + F+ L
Sbjct: 270 ERPDEMVHPIGERLDLLLSLLLSYIKDVCYTDGKIDNNKTKDLYRDLINI-FDKLLLPTH 328
Query: 308 TGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLY--------PPLTRMSAVSYLASF 359
++F MFY C+ F A+ F+ L+ P + R +A +Y+ SF
Sbjct: 329 ASCHVQFFMFYLCS---------FKLGFAEAFLEHLWKKLQDPNNPAIIRQAAANYIGSF 379
Query: 360 LSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA------HRVFYSGCQAIMYVLC 413
L+RA+F+ + S L LV+W Y N D KA H FYS CQA+ Y
Sbjct: 380 LARAKFIPLITVKSCLDLLVNWLHIYLN--NQDSGTKAFCDVALHGPFYSACQAVFYAFV 437
Query: 414 FRMRSIMDIPRLKSQLLLMP---LETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSE 470
FR + ++ LK L + E ++ LNPLK+CLPSVV+ F + +L
Sbjct: 438 FRHKQLLS-GNLKEGLRYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYT 496
Query: 471 TFVFNDLLESELSRAFGGLER-------LDMFFPFDPCLLKKSDRF 509
N + R G + LD FFPFDPC+LK+S +F
Sbjct: 497 IIERNHRQMLPVIRNTAGGDSVQTCTNPLDTFFPFDPCVLKRSKKF 542
>gi|194389212|dbj|BAG65594.1| unnamed protein product [Homo sapiens]
Length = 618
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 136/554 (24%), Positives = 227/554 (40%), Gaps = 109/554 (19%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRA-LLETSLKALSGAVSYIDISHHESL 87
V E L + G+ +++ L + LDPD + + L ++ Y+ E L
Sbjct: 23 VTEVLLKYKKGETNDFELLKNQL-----LDPDIKDDQIINWLLEFRSSIMYL-TKDFEQL 76
Query: 88 LVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPH 147
+ I + N V++ + +L ++ ++ CL+M+ S+F PP + +
Sbjct: 77 ISIILRLPWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGDVDV 136
Query: 148 GLERKHQV-----LSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYM 202
H AL+ I VP P L+PI+V++ P V L+ Y+
Sbjct: 137 SDSDDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLE---CYV 193
Query: 203 ENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAA 262
N L++ S +R +L ++++L+ LD+ +GI ED EE A
Sbjct: 194 HNLLRI--SVYFPTLRHEILELIIEKLLKLDVNAS---------RQGI-----EDAEETA 237
Query: 263 -------DDAEQVGDELPSGSLSRKSLSG--------NLIAELLDSLMVLTFEHLES-CE 306
D E + + ++ +G + +AE LD LM L +++ C
Sbjct: 238 TQTCGGTDSTEGLFNMDEDEETEHETKAGPERLDQMVHPVAERLDILMSLVLSYMKDVCY 297
Query: 307 GTGRL----------------------------IEFVMFYACALDPENCGLRFATMLADV 338
G++ ++F MFY C+ F A+
Sbjct: 298 VDGKVDNGKTKDLYRDLINIFDKLLLPTHASCHVQFFMFYLCS---------FKLGFAEA 348
Query: 339 FVSGLY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILG 390
F+ L+ P + R +A +Y+ SFL+RA+F+ + S L LV+W Y N
Sbjct: 349 FLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLLVNWLHIYLN--N 406
Query: 391 GDINPKA------HRVFYSGCQAIMYVLCFRMRSIM--DIPRLKSQLLLMPLETVLKHDL 442
D KA H FYS CQA+ Y FR + ++ ++ L + E ++ L
Sbjct: 407 QDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLKEGLQYLQSLNFERIVMSQL 466
Query: 443 NPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER-------LDMF 495
NPLK+CLPSVV+ F + +L N+ + R+ G + LD F
Sbjct: 467 NPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQICTNPLDTF 526
Query: 496 FPFDPCLLKKSDRF 509
FPFDPC+LK+S +F
Sbjct: 527 FPFDPCVLKRSKKF 540
>gi|87299630|ref|NP_001034610.1| RNA polymerase I-specific transcription initiation factor RRN3 [Mus
musculus]
gi|259494579|sp|B2RS91.1|RRN3_MOUSE RecName: Full=RNA polymerase I-specific transcription initiation
factor RRN3
gi|187951189|gb|AAI38777.1| RRN3 RNA polymerase I transcription factor homolog (yeast) [Mus
musculus]
gi|187952327|gb|AAI38775.1| RRN3 RNA polymerase I transcription factor homolog (yeast) [Mus
musculus]
Length = 656
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 124/495 (25%), Positives = 210/495 (42%), Gaps = 98/495 (19%)
Query: 85 ESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDK-- 142
E L+ I + N V++ + +L ++ ++ CL+M+ S+F PP + +
Sbjct: 105 EQLINIILRLPWLNRSQRVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIVKEGG 164
Query: 143 ---LKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIV 199
+ + H AL+ I VP P L+PI+V++ P V L+
Sbjct: 165 IDVSDSDDEDDNLPAIFDTCHRALQIITRYVPSTPWFLMPILVEKFPFVRKSERTLE--- 221
Query: 200 VYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILH-----------DDFSK 248
Y+ N L++ S +R +L V+++L+ LD+ + DI D ++
Sbjct: 222 CYVHNLLRI--SLYFPTLRREILELVIEKLLKLDVSVSRQDIEDAEEKAAQTCGGTDTTE 279
Query: 249 GIFEMELEDVEEAADDAEQVGDELPS----------------------------GSLSR- 279
G+F M D +E D ++ E P+ G +
Sbjct: 280 GLFNM---DEDEDTDPEKKADQEQPNQMAHPTAERLDVLLCLLLSYIEDVCRVHGKIDNN 336
Query: 280 --KSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLAD 337
K L +LI+ + D L++ T SC ++F MF+ C+ F A+
Sbjct: 337 KTKDLYRDLIS-IFDKLLLPTHA---SCH-----VQFFMFFLCS---------FKLGFAE 378
Query: 338 VFVSGLY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNIL 389
F+ L+ P + R +A +Y+ SFL+RA+F+ + + L LV+W Y +
Sbjct: 379 AFLEHLWKKLQDPNNPAIIRQAAANYIGSFLARAKFIPLITVKTCLDLLVNWLHMY--LT 436
Query: 390 GGDINPKA------HRVFYSGCQAIMYVLCFRMRSIM--DIPRLKSQLLLMPLETVLKHD 441
D KA H FYS CQA+ Y + FR + ++ ++ + L + E ++
Sbjct: 437 NQDSGTKAFCDVALHGPFYSACQAVFYTVVFRHKQLLSGNLKQGLQYLQSLNFERIVLSQ 496
Query: 442 LNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER-------LDM 494
LNPLK+CLP VV+ F + +L N + R+ G + LD
Sbjct: 497 LNPLKICLPQVVNFFAAITNKYQLVFCYTIMERNSRQMLPVIRSTAGGDSVQTCTNPLDT 556
Query: 495 FFPFDPCLLKKSDRF 509
FFPFDPC+LK+S +F
Sbjct: 557 FFPFDPCVLKRSKKF 571
>gi|194219208|ref|XP_001488975.2| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 [Equus caballus]
Length = 651
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 129/485 (26%), Positives = 205/485 (42%), Gaps = 83/485 (17%)
Query: 88 LVSIFGMSMW-NYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEP 146
L+SI W N V++ + +L ++ ++ CL+M+ S+F PP + +
Sbjct: 109 LISILLRLQWLNRSHMVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVVIKEGDVD 168
Query: 147 HGLERKHQV-----LSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVY 201
H AL+ I VP P L+PI+V++ P V L+ Y
Sbjct: 169 VSDSDDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLE---CY 225
Query: 202 MENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILH-----------DDFSKGI 250
+ N L++ S +R +L V+++L+ LD+ DI D ++G+
Sbjct: 226 VHNLLRI--SVYFPTLRHEILELVIEKLLKLDVNASRQDIEDAEETAAQTGSGTDATEGL 283
Query: 251 FEMELEDVE---EAADDAEQVGDELPSGSLSR-------------------KSLSGNLIA 288
F M+ ED E E D E++ D++ R + N
Sbjct: 284 FNMD-EDEEAEHETKADPERL-DQMVHPVAERLDILLSLLLSYIKDVCYVDGKIDNNKTK 341
Query: 289 ELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLY---- 344
+L L+ + F+ L ++F MFY C+ F A+ F+ L+
Sbjct: 342 DLYRDLITI-FDKLLLPTHASCHVQFFMFYLCS---------FKLGFAEAFLEHLWKKLQ 391
Query: 345 ----PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA--- 397
P + R +A +Y+ SFL+RA+F+ + S L LV+W Y N D KA
Sbjct: 392 DPNNPAIIRQAAGNYIGSFLARAKFVPLITVKSCLDLLVNWLHIYLN--NQDSGTKAFCD 449
Query: 398 ---HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP---LETVLKHDLNPLKVCLPS 451
H FYS CQA+ Y FR + ++ LK L + E ++ LNPLK+CLPS
Sbjct: 450 VALHGPFYSACQAVFYTFVFRHKQLLS-GNLKEGLRYLQSLNFERIVMSQLNPLKICLPS 508
Query: 452 VVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER-------LDMFFPFDPCLLK 504
VV+ F + +L N+ + R+ G + LD FFPFDPC+LK
Sbjct: 509 VVNFFAAITSKYQLVFCYTIIERNNRQMLPVVRSTAGGDSVHTCTNPLDTFFPFDPCVLK 568
Query: 505 KSDRF 509
+S +F
Sbjct: 569 RSKKF 573
>gi|291241045|ref|XP_002740429.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
Length = 625
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 134/553 (24%), Positives = 238/553 (43%), Gaps = 107/553 (19%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRA-LLETSLKALSGAVSYIDISHHESL 87
V + L G + +Y+ L + DPD + L LK L G VS++ ESL
Sbjct: 83 VTDVLRKYNEGCHKDYDLLTLQL-----ADPDIKPNSLICWLKELKGCVSHLS-REFESL 136
Query: 88 LVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPH 147
+ + + + D + L+ L ++ Y+ + L ML+ +F P K P
Sbjct: 137 VAVLLKIEWVDKDDSIAAEYISLLTHLVSAQTFYLRAVLRMLIKHFMP------KFPAPE 190
Query: 148 GL--ERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENT 205
G+ E++ R H ALKSI + P+ PT L + P + + + Y++N
Sbjct: 191 GITEEKEAICFQRTHCALKSIIHIAPMTPTILPETCSECFPYM---KKETHIQECYVKNL 247
Query: 206 LKLESSAMGEL--VRSTLLMAVVDRLIDLDMEIGWDDI--------------LHDDFSKG 249
L+L +G L +R+++L +V+++ +D+ ++
Sbjct: 248 LEL----IGYLPNMRASILQLIVEKMTKIDVHAPKHELNQIAAEEEEDEDEEDDLMEEDM 303
Query: 250 IFEM-ELEDVEEAADDAEQ---VGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLES- 304
F+M EL+ +E D A++ GDE +G + A+ LD +M L F++ S
Sbjct: 304 QFDMDELDGIENDKDTAKEKDCTGDEAENGGPMTHEM-----ADRLDVMMNLLFKYTFSV 358
Query: 305 CEGTG-------RL---------------------IEFVMFYACALDPENCGLRFATMLA 336
C G RL I+++MFY C+ F +A
Sbjct: 359 CHPQGIFKMEPTRLLWKQFLGIFNKIILPTHGSCHIQYIMFYMCS---------FNQNIA 409
Query: 337 DVFVSGLYPPLT--------RMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNI 388
D F+ L+ + R S+ S+++S LSRA+F+ + ++ L+ W +Y +
Sbjct: 410 DAFIDFLWKKIQNPDTAAILRQSSASFISSLLSRAKFIPLSTVKAMFDVLIPWIHKYIDR 469
Query: 389 LGG------DINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDL 442
G D+N H FYS CQA Y+ FR + +++ + + + + + ++ L
Sbjct: 470 QEGSSRSYPDVN--LHGPFYSVCQAAFYIFVFRHKQLLETNKGLNYVRSLNFDRIVTCRL 527
Query: 443 NPLKVCLPSVVSEFLQQSKAARLFTVSETFVFND------LLESELSRAFGGLERLDMFF 496
NPLKVCLP+VV+ F ++ ++ N+ + +S + + LD +F
Sbjct: 528 NPLKVCLPTVVNMFATITRMHQIVYCYTVIERNNRTLLPVVTQSHNTNVLTNVNPLDSYF 587
Query: 497 PFDPCLLKKSDRF 509
PFDP LL +S ++
Sbjct: 588 PFDPYLLSRSKKY 600
>gi|344306517|ref|XP_003421933.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 [Loxodonta africana]
Length = 658
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 134/491 (27%), Positives = 209/491 (42%), Gaps = 95/491 (19%)
Query: 88 LVSIFGMSMW-NYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEP 146
LVSI W N +V++ + +L ++ ++ CL+M+ S+F PP + +
Sbjct: 109 LVSILLRLQWLNRSQNVVEEYLAFLSNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGDVD 168
Query: 147 HGLERKHQV-----LSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVY 201
H AL+ I VP P L+PI+V++ P V L+ Y
Sbjct: 169 VSDSDDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLE---CY 225
Query: 202 MENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILH-----------DDFSKGI 250
+ N L++ S +R +L V+++L+ LD+ DI D +G+
Sbjct: 226 VHNLLRI--SVYFPTLRHEILELVIEKLLKLDVNASRQDIEDAEEAAAQTSGGTDAPEGL 283
Query: 251 FEMELEDV---EEAADDAE------QVGDELP----------------SGSLSR---KSL 282
F M+ ++ E AD A+ V + L G + K L
Sbjct: 284 FNMDEDEETKGETKADPAQLDHMVHPVAERLDILLSLLLSYIKDVCYVDGKVDNNKTKDL 343
Query: 283 SGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSG 342
+LI + D L++ T SC ++F MFY C+ F A+ F+
Sbjct: 344 YRDLIT-IFDKLLLPTHA---SCH-----VQFFMFYLCS---------FKLGFAEAFLEH 385
Query: 343 LY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDIN 394
L+ P + R +A +Y+ SFL+RA+F+ + S L LV+W Y + D
Sbjct: 386 LWKKLQDPNNPAIIRQAAGNYIGSFLARAKFVPLITVKSCLDLLVNWLHVYLD--NQDSG 443
Query: 395 PKA------HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP---LETVLKHDLNPL 445
KA H FYS CQA+ Y FR + ++ LK L + E ++ LNPL
Sbjct: 444 TKAFCDVALHGPFYSACQAVFYTFVFRHKQLLS-GNLKEGLRYLQSLNFERIVMSQLNPL 502
Query: 446 KVCLPSVVSEFLQ-QSKAARLFTVSETFVFNDLLESELSRAFGG------LERLDMFFPF 498
K+CLPSVV+ F SK +F + N + + GG LD FFPF
Sbjct: 503 KICLPSVVNFFASITSKYQLVFCYTIIERNNRQMLPVIRNTAGGDSVQTCTNPLDTFFPF 562
Query: 499 DPCLLKKSDRF 509
DPC+LK+S++F
Sbjct: 563 DPCVLKRSNKF 573
>gi|281340595|gb|EFB16179.1| hypothetical protein PANDA_006503 [Ailuropoda melanoleuca]
Length = 569
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 132/482 (27%), Positives = 200/482 (41%), Gaps = 85/482 (17%)
Query: 88 LVSIFGMSMW-NYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFL------ 140
L+SI W N V++ + +L ++ ++ CL+M+VS F PP +
Sbjct: 109 LISILLRLQWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIVSYFVPPRVVIKEGDVN 168
Query: 141 --DKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMI 198
D E L H AL+ I VP P L+PI+V++ P V L+
Sbjct: 169 VSDSDDEDDNLPGN---FDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLE-- 223
Query: 199 VVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDI-----------LHDDFS 247
Y+ N L++ S +R +L V+++L+ LD+ DI D +
Sbjct: 224 -CYVHNLLRI--SVYFPTLRHEILELVIEKLLKLDVNASRQDIEDAEDAAMQAGRGSDAA 280
Query: 248 KGIFEM-ELEDVEEAADDAEQVGDELPSGSLSR-------------------KSLSGNLI 287
+G+F M E ED E A Q D + R + N
Sbjct: 281 EGLFSMDEDEDTEHDAKADVQRLDHMVHPVAERLDILLSLLLSYIKDVCYIDGKVDNNKT 340
Query: 288 AELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLY--- 344
+L L+ + F+ L ++F MFY C+ F A+ F+ L+
Sbjct: 341 KDLYRDLITI-FDKLLLPTHASCHVQFFMFYLCS---------FKLGFAEAFLEHLWKKL 390
Query: 345 -----PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA-- 397
P + R +A +Y+ SFL+RA+F+ + S L LV+W Y N D KA
Sbjct: 391 QDPNNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLLVNWLHIYLN--NQDSGTKAFC 448
Query: 398 ----HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP---LETVLKHDLNPLKVCLP 450
H FYS CQA+ Y FR + ++ LK L + E ++ LNPLK+CLP
Sbjct: 449 DVALHGPFYSACQAVFYTFVFRHKQLLS-GNLKEGLRYLQSLNFERIVMSQLNPLKICLP 507
Query: 451 SVVSEFLQ-QSKAARLFTVSETFVFNDLLESELSRAFGG------LERLDMFFPFDPCLL 503
+VV+ F SK +F + N + + GG LD FFPFDPC+L
Sbjct: 508 AVVNFFAAITSKYQLVFCYTIIERNNRQMLPVIRNTAGGDSVQTCTNPLDTFFPFDPCVL 567
Query: 504 KK 505
K+
Sbjct: 568 KR 569
>gi|410255386|gb|JAA15660.1| RRN3 RNA polymerase I transcription factor homolog [Pan
troglodytes]
gi|410296548|gb|JAA26874.1| RRN3 RNA polymerase I transcription factor homolog [Pan
troglodytes]
gi|410345920|gb|JAA40671.1| RRN3 RNA polymerase I transcription factor homolog [Pan
troglodytes]
Length = 651
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 136/550 (24%), Positives = 227/550 (41%), Gaps = 101/550 (18%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRA-LLETSLKALSGAVSYIDISHHESL 87
V E L + G+ +++ L + LDPD + + L ++ Y+ E L
Sbjct: 56 VTEVLLKYKKGETNDFELLKNQL-----LDPDIKDDQIINWLLEFRSSIMYL-TKDFEQL 109
Query: 88 LVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPH 147
+ I + N V++ + +L ++ ++ CL+M+ S+F PP + +
Sbjct: 110 ISIILRLPWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGDVDV 169
Query: 148 GLERKHQV-----LSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYM 202
H AL+ I VP P L+PI+V++ P V L+ Y+
Sbjct: 170 SDSDDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLE---CYV 226
Query: 203 ENTLKLESSAMGELVRSTLLMAVVDRLIDLDM-----------EIGWDDILHDDFSKGIF 251
N L++ S +R +L ++++L+ LD+ E D ++G+F
Sbjct: 227 HNLLRI--SVYFPTLRHEILELIIEKLLKLDVNASRQGIEDAEETATQTCGGTDSTEGLF 284
Query: 252 EMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLES-CEGTGR 310
M+ ++ E A G E R + +AE LD LM L +++ C G+
Sbjct: 285 NMDEDEETEHETKA---GPE-------RLDQMVHPVAERLDILMSLVLSYMKDVCYVDGK 334
Query: 311 L----------------------------IEFVMFYACALDPENCGLRFATMLADVFVSG 342
+ ++F MFY C+ F A+ F+
Sbjct: 335 VDNGKTKDLYRDLINIFDKLLLPTHASCHVQFFMFYLCS---------FKLGFAEAFLEH 385
Query: 343 LY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDIN 394
L+ P + R +A +Y+ SFL+RA+F+ + S L LV+W Y N D
Sbjct: 386 LWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLLVNWLHIYLN--NQDSG 443
Query: 395 PKA------HRVFYSGCQAIMYVLCFRMRSIM--DIPRLKSQLLLMPLETVLKHDLNPLK 446
KA H FYS CQA+ Y FR + ++ ++ L + E ++ LNPLK
Sbjct: 444 TKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLKEGLQYLQSLNFERIVMSQLNPLK 503
Query: 447 VCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER-------LDMFFPFD 499
+CLPSVV+ F + +L N+ + R+ G + LD FFPFD
Sbjct: 504 ICLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQTCTNPLDTFFPFD 563
Query: 500 PCLLKKSDRF 509
PC+LK+S +F
Sbjct: 564 PCVLKRSKKF 573
>gi|93102377|ref|NP_060897.3| RNA polymerase I-specific transcription initiation factor RRN3
[Homo sapiens]
gi|74719591|sp|Q9NYV6.1|RRN3_HUMAN RecName: Full=RNA polymerase I-specific transcription initiation
factor RRN3; AltName: Full=Transcription initiation
factor IA; Short=TIF-IA
gi|7670100|gb|AAF66160.1|AF227156_1 RRN3 [Homo sapiens]
gi|119575141|gb|EAW54754.1| hCG1786665, isoform CRA_e [Homo sapiens]
gi|124376144|gb|AAI32689.1| RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)
[Homo sapiens]
gi|124376846|gb|AAI32691.1| RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)
[Homo sapiens]
gi|189054534|dbj|BAG37307.1| unnamed protein product [Homo sapiens]
gi|261858950|dbj|BAI45997.1| RRN3 RNA polymerase I transcription factor homolog [synthetic
construct]
gi|313883210|gb|ADR83091.1| RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)
[synthetic construct]
Length = 651
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 136/550 (24%), Positives = 227/550 (41%), Gaps = 101/550 (18%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRA-LLETSLKALSGAVSYIDISHHESL 87
V E L + G+ +++ L + LDPD + + L ++ Y+ E L
Sbjct: 56 VTEVLLKYKKGETNDFELLKNQL-----LDPDIKDDQIINWLLEFRSSIMYL-TKDFEQL 109
Query: 88 LVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPH 147
+ I + N V++ + +L ++ ++ CL+M+ S+F PP + +
Sbjct: 110 ISIILRLPWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGDVDV 169
Query: 148 GLERKHQV-----LSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYM 202
H AL+ I VP P L+PI+V++ P V L+ Y+
Sbjct: 170 SDSDDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLE---CYV 226
Query: 203 ENTLKLESSAMGELVRSTLLMAVVDRLIDLDM-----------EIGWDDILHDDFSKGIF 251
N L++ S +R +L ++++L+ LD+ E D ++G+F
Sbjct: 227 HNLLRI--SVYFPTLRHEILELIIEKLLKLDVNASRQGIEDAEETATQTCGGTDSTEGLF 284
Query: 252 EMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLES-CEGTGR 310
M+ ++ E A G E R + +AE LD LM L +++ C G+
Sbjct: 285 NMDEDEETEHETKA---GPE-------RLDQMVHPVAERLDILMSLVLSYMKDVCYVDGK 334
Query: 311 L----------------------------IEFVMFYACALDPENCGLRFATMLADVFVSG 342
+ ++F MFY C+ F A+ F+
Sbjct: 335 VDNGKTKDLYRDLINIFDKLLLPTHASCHVQFFMFYLCS---------FKLGFAEAFLEH 385
Query: 343 LY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDIN 394
L+ P + R +A +Y+ SFL+RA+F+ + S L LV+W Y N D
Sbjct: 386 LWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLLVNWLHIYLN--NQDSG 443
Query: 395 PKA------HRVFYSGCQAIMYVLCFRMRSIM--DIPRLKSQLLLMPLETVLKHDLNPLK 446
KA H FYS CQA+ Y FR + ++ ++ L + E ++ LNPLK
Sbjct: 444 TKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLKEGLQYLQSLNFERIVMSQLNPLK 503
Query: 447 VCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER-------LDMFFPFD 499
+CLPSVV+ F + +L N+ + R+ G + LD FFPFD
Sbjct: 504 ICLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQICTNPLDTFFPFD 563
Query: 500 PCLLKKSDRF 509
PC+LK+S +F
Sbjct: 564 PCVLKRSKKF 573
>gi|431910472|gb|ELK13544.1| RNA polymerase I-specific transcription initiation factor RRN3
[Pteropus alecto]
Length = 651
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 145/553 (26%), Positives = 229/553 (41%), Gaps = 107/553 (19%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRA-LLETSLKALSGAVSYIDISHHESL 87
V E L + G+ ++Y L + DPD + + L ++ Y+ +
Sbjct: 56 VTEVLLKYKKGETNDYELLKNQLS-----DPDIKDDQIINWLLEFRSSIMYLTKDFEQ-- 108
Query: 88 LVSIFGMSMW-NYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEP 146
L+SI W N V++ + +L ++ ++ CL+M+ S+F PP + +
Sbjct: 109 LISILLRLQWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVVIKEGDID 168
Query: 147 HGLERKHQV-----LSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVY 201
H AL+ I VP P L+PI+V++ P V L+ Y
Sbjct: 169 VSDSDDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLE---CY 225
Query: 202 MENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDI-----------LHDDFSKGI 250
+ N L++ S +R +L V+++L+ LD+ DI D ++G+
Sbjct: 226 VHNLLRI--SVYFPTLRHEILELVIEKLLKLDVNASRQDIEDAEEIATQTSTGTDATEGL 283
Query: 251 FEMELEDVE---EAADDAEQVGDELPSGSLSR---------------------------K 280
F M+ EDVE E D E++ D++ R K
Sbjct: 284 FNMD-EDVETEHETKADPERL-DQMVHPVAERLDILLSLLLSYIKDVCYVDGKIDINKTK 341
Query: 281 SLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFV 340
L +LI + D L++ T SC ++F MFY C+ F A+ F+
Sbjct: 342 DLYRDLIT-IFDKLLLPTHA---SCH-----VQFFMFYLCS---------FKLGFAEAFL 383
Query: 341 SGLY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGD 392
L+ P + R +A +Y+ S L+RA+F+ + S L LV+W Y N D
Sbjct: 384 EHLWKKLQDPNNPAIIRQAAGNYIGSLLARAKFIPLITVKSCLDLLVNWLHIYLN--NQD 441
Query: 393 INPKA------HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP---LETVLKHDLN 443
K H FYS CQA+ Y FR + ++ LK L + E ++ LN
Sbjct: 442 SGTKLFCDVALHGPFYSACQAVFYTFVFRHKQLLS-GNLKEGLRYLQSLNFERIVMSQLN 500
Query: 444 PLKVCLPSVVSEFLQ-QSKAARLFTVSETFVFNDLLESELSRAFGG------LERLDMFF 496
PLK+CLPSVV+ F SK +F + N + + GG LD FF
Sbjct: 501 PLKICLPSVVNFFAAITSKYQLVFCYTIIERNNRQMLPVIRNTAGGDSVQTCTNPLDTFF 560
Query: 497 PFDPCLLKKSDRF 509
PFDPC+LK+S +F
Sbjct: 561 PFDPCVLKRSKKF 573
>gi|432108572|gb|ELK33281.1| RNA polymerase I-specific transcription initiation factor RRN3
[Myotis davidii]
Length = 699
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 137/551 (24%), Positives = 231/551 (41%), Gaps = 103/551 (18%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRA-LLETSLKALSGAVSYIDISHHESL 87
V E L + G+ ++Y L + DPD + + L ++ Y+ E L
Sbjct: 54 VTEVLLKYKKGETNDYELLKNQLS-----DPDIKDDQIINWLLEFRSSIMYL-TKDFEQL 107
Query: 88 LVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDK----- 142
+ + + V++ + +L ++ ++ CL+M+ S+F PP + +
Sbjct: 108 INILLRLQWLTRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVVIKEGDVDV 167
Query: 143 LKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYM 202
+ + + H AL+ I VP P L+PI+V++ P V K ER + Y+
Sbjct: 168 SDSDDEDDNLPENFNTCHRALQIIARYVPSTPWFLMPILVEKFPFVQ-KSER--TLECYV 224
Query: 203 ENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILH-----------DDFSKGIF 251
N L++ S +R +L V+++L+ LD+ DI D ++G+F
Sbjct: 225 HNLLRI--SVYFPTLRHEILELVIEKLLKLDVNASRQDIEDAEEIAAQTGSGTDATEGLF 282
Query: 252 EMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLES-CEGTGR 310
M+ ++V E A+ R + + +AE LD L+ L +++ C G+
Sbjct: 283 NMDEDEVPENETKADP----------ERLNQMSHPVAERLDILLSLLLSYIKDVCYVDGK 332
Query: 311 L----------------------------IEFVMFYACALDPENCGLRFATMLADVFVSG 342
+ ++F MFY C+ F A+ F+
Sbjct: 333 IDINKTKDLYRELIIIFDKLLLPTHASCHVQFFMFYLCS---------FKLGFAEAFLEH 383
Query: 343 LY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDIN 394
L+ P + R +A +Y+ S L+RA+F+ + S L LV+W Y N D
Sbjct: 384 LWKKLQDPNNPAIIRQAAANYIGSLLARAKFIPLITVKSCLDLLVNWLHIYLN--NQDSG 441
Query: 395 PKA------HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP---LETVLKHDLNPL 445
KA H FYS CQA+ Y FR + ++ LK L + E ++ LNPL
Sbjct: 442 TKAFCDVALHGPFYSACQAVFYTCVFRHKQLLS-GNLKEGLRYLQSLNFERIVMSQLNPL 500
Query: 446 KVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER-------LDMFFPF 498
K+CLPSVV+ F + +L N+ + R+ G + LD FFPF
Sbjct: 501 KICLPSVVNFFAAITSKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQTCTNPLDTFFPF 560
Query: 499 DPCLLKKSDRF 509
DPC+LK+S +F
Sbjct: 561 DPCVLKRSKKF 571
>gi|296219591|ref|XP_002755948.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 isoform 1 [Callithrix jacchus]
Length = 651
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 135/551 (24%), Positives = 228/551 (41%), Gaps = 103/551 (18%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRA-LLETSLKALSGAVSYIDISHHESL 87
V E L + G+ +++ L + LDPD + + L +++Y+ E L
Sbjct: 56 VTEVLLKYKKGETNDFELLKNQL-----LDPDIKDDQIINWLLEFRSSITYL-TKDFEQL 109
Query: 88 LVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPH 147
+ I + N V++ + +L ++ ++ CL+M+ S+F PP +
Sbjct: 110 IGIILRLPWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKDGNVDV 169
Query: 148 GLERKHQV-----LSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYM 202
H AL+ I VP P L+PI+V++ P V L+ Y+
Sbjct: 170 SDSDDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLE---CYV 226
Query: 203 ENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILH-----------DDFSKGIF 251
N L++ S +R +L ++++L+ LD+ DI D ++G+F
Sbjct: 227 HNLLRI--SVYFPTLRHEILELIIEKLLKLDVSASRQDIEDAEETAAQTCGGTDSTEGLF 284
Query: 252 EMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLES-CEGTGR 310
M+ ++ E A+ R + +AE LD LM L +++ C G+
Sbjct: 285 NMDEDEETEHETRADP----------KRLDQMVHPVAERLDILMSLLLSYMKDVCYVDGK 334
Query: 311 L----------------------------IEFVMFYACALDPENCGLRFATMLADVFVSG 342
+ ++F+MFY C+ F A+ F+
Sbjct: 335 VDNGKTKDLYRNLINIFDKLLLPTHASCHVQFLMFYLCS---------FKLGFAEAFLEH 385
Query: 343 LY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDIN 394
L+ P + R +A +Y+ SFL+RA+F+ + S L +V+W Y + D
Sbjct: 386 LWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLMVNWLHIYLH--NQDSG 443
Query: 395 PKA------HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP---LETVLKHDLNPL 445
KA H FYS CQA+ Y FR + ++ LK L + E ++ LNPL
Sbjct: 444 TKAFCDVALHGPFYSACQAVFYTFVFRHKQLLS-GNLKEGLQYLQSLNFERIVMSQLNPL 502
Query: 446 KVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER-------LDMFFPF 498
K+CLPSVV+ F + +L N+ + R+ G + LD FFPF
Sbjct: 503 KICLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQTCTNPLDTFFPF 562
Query: 499 DPCLLKKSDRF 509
DPC+LK+S +F
Sbjct: 563 DPCVLKRSKKF 573
>gi|10046714|emb|CAC07955.1| transcription initiation factor IA protein [Homo sapiens]
Length = 651
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/550 (24%), Positives = 227/550 (41%), Gaps = 101/550 (18%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRA-LLETSLKALSGAVSYIDISHHESL 87
V E L + G+ +++ L + LDPD + + L ++ Y+ E L
Sbjct: 56 VTEVLLKYKKGETNDFELLKNQL-----LDPDIKDDQIINWLLEFRSSIMYL-TKDFEQL 109
Query: 88 LVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPH 147
+ I + N V++ + +L ++ ++ CL+M+ S+F PP + +
Sbjct: 110 ISIILRLPWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGDVDV 169
Query: 148 GLERKHQV-----LSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYM 202
H AL+ I VP P L+PI+V++ P V L+ Y+
Sbjct: 170 SDSDDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLE---CYV 226
Query: 203 ENTLKLESSAMGELVRSTLLMAVVDRLIDLDM-----------EIGWDDILHDDFSKGIF 251
N L++ S +R +L ++++L+ LD+ E D ++G+F
Sbjct: 227 HNLLRI--SVYFPTLRHEILELIIEKLLKLDVNASRQGIEDAEETATQTCGGTDSTEGLF 284
Query: 252 EMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLES-CEGTGR 310
M+ ++ E A G E R + +AE LD LM L +++ C G+
Sbjct: 285 NMDEDEETEHETKA---GPE-------RLDQMVHPVAERLDILMSLVLSYMKDVCYVDGK 334
Query: 311 L----------------------------IEFVMFYACALDPENCGLRFATMLADVFVSG 342
+ ++F MFY C+ F A+ F+
Sbjct: 335 VDNGKTKDLYRDLINIFDKLLLPTHASCHVQFFMFYLCS---------FKLGFAEAFLEH 385
Query: 343 LY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDIN 394
L+ P + R +A +Y+ SFL+RA+F+ + S L LV+W Y N D
Sbjct: 386 LWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLLVNWLHIYLN--NQDSG 443
Query: 395 PKA------HRVFYSGCQAIMYVLCFRMRSIM--DIPRLKSQLLLMPLETVLKHDLNPLK 446
KA H FYS CQA+ Y FR + ++ ++ L + E ++ LNPLK
Sbjct: 444 TKAFCDVALHGPFYSACQAVFYXFVFRHKQLLSGNLKEGLQYLQSLNFERIVMSQLNPLK 503
Query: 447 VCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER-------LDMFFPFD 499
+CLPSVV+ F + +L N+ + R+ G + LD FFPFD
Sbjct: 504 ICLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQICTNPLDTFFPFD 563
Query: 500 PCLLKKSDRF 509
PC+LK+S +F
Sbjct: 564 PCVLKRSKKF 573
>gi|348543943|ref|XP_003459441.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 [Oreochromis niloticus]
Length = 610
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 130/540 (24%), Positives = 232/540 (42%), Gaps = 86/540 (15%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNR-ALLETSLKALSGAVSYIDISHHESL 87
V E L + GD+ +Y L + +DP+ + A + L+ V+++ HE L
Sbjct: 23 VAETLEKHKHGDSSDYELLKHQL-----VDPEIKDAQIINWLQEFRTCVTHL-TKDHEQL 76
Query: 88 LVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFL------- 140
+ +I + V+D + +L ++ Y+ +CL M+VS+FTP +
Sbjct: 77 IYTILRLPWLGRSQAVVDEYLAFLGNLVSAQTVYLCACLNMVVSHFTPKRVTICEGGVDI 136
Query: 141 -DKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIV 199
D E L R H AL+ I VP L+PI+ + P + L+
Sbjct: 137 SDSDDEDENLPRN---FDHCHQALQLIIRYVPSTSRFLMPILQESFPFIQKSSRTLE--- 190
Query: 200 VYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVE 259
Y+ N L++ + +R +L ++ +L+ LD+ I + ++ + E E
Sbjct: 191 CYVHNLLRI--TVYIPSIRRDILELIIGKLLKLDVNASRTHIEEAEENRVQTQKAEEQSE 248
Query: 260 EAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLES---------CEGTGR 310
E D ++ ++ + +R ++ + +AE LD+LM + +++ E T
Sbjct: 249 ECLFDMDE---DVSADEPTRTTVMAHPVAERLDTLMAVLMAYIKDICYVDGSFHVERTKE 305
Query: 311 L--------------------IEFVMFYACALDPENCGLRFATMLADVFVSGLY------ 344
L +++ +FY C+ P LA+ F+ L+
Sbjct: 306 LYRDLLTVFDKLILPTHASCHVQYTLFYLCSFKP---------ALAEAFLDHLWKILQNP 356
Query: 345 --PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYC---NILGGDI--NPKA 397
P + R +A YL SFL+RA+F+ + + L L+ W +Y + G + +
Sbjct: 357 SLPAVLRQAAAGYLGSFLARAKFIPLSTVWACLDLLISWIHQYIDSQDSCGKQVCCDVSL 416
Query: 398 HRVFYSGCQAIMYVLCFRMRSIMDIPRLKS--QLLLMPLETVLKHDLNPLKVCLPSVVSE 455
H FY+ CQA+ Y + FR R++++ K L + LE V+ LNPL+VCLPS+ +
Sbjct: 417 HGPFYTSCQAVFYTIIFRHRAMLEANMKKGLEYLQSLNLERVVMCQLNPLRVCLPSITNM 476
Query: 456 FLQQSKAARLFTVSETFVFNDLLESELSRAFGG-------LERLDMFFPFDPCLLKKSDR 508
F ++ ++ N+ + R+ G LD FFPFDP LLK+S +
Sbjct: 477 FAAITRKYQVVFCYTIIERNNRCVLPVVRSSAGGDCVTTNTNPLDSFFPFDPYLLKRSGQ 536
>gi|159470315|ref|XP_001693305.1| predicted protein [Chlamydomonas reinhardtii]
gi|158277563|gb|EDP03331.1| predicted protein [Chlamydomonas reinhardtii]
Length = 199
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 107/195 (54%), Gaps = 10/195 (5%)
Query: 316 MFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLL 375
+FY C +P +C F +L PP+TR + +YLASFL+RA FL +V L
Sbjct: 1 IFYTCLSNPSHCSPSFLRLLVSRLRDTRQPPITRAACSAYLASFLARAAFLPESLVVKTL 60
Query: 376 KRLVDWCLEYCNILGGDIN-PKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPL 434
+ L +C +YCN G + + H+VFY+ QA++YVLC+ M+ ++ L+ P+
Sbjct: 61 QDLAAFCQDYCNNQGDTASQTQRHQVFYATAQAVLYVLCYHMQPLLA--ETVVALVRGPV 118
Query: 435 ETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDM 494
VL H L PL VCLPSV +EF+ Q+ S V L S++ A L+M
Sbjct: 119 WQVLNHRLQPLGVCLPSVAAEFVHQA-------TSLGIVDCRPLLSQVEPATRSQRPLEM 171
Query: 495 FFPFDPCLLKKSDRF 509
FFPFDP LL++S RF
Sbjct: 172 FFPFDPYLLRRSSRF 186
>gi|417403641|gb|JAA48619.1| Putative rna polymerase i transcription factor [Desmodus rotundus]
Length = 651
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 139/552 (25%), Positives = 229/552 (41%), Gaps = 105/552 (19%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRA-LLETSLKALSGAVSYIDISHHESL 87
VRE L + G+ ++Y L + DPD + + L ++ Y+ +
Sbjct: 56 VREVLLKYKKGETNDYELLKNQLS-----DPDIKDDQIINWLLEFRSSIMYLTKDFEQ-- 108
Query: 88 LVSIFGMSMW-NYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEP 146
L+SI W + V++ + +L ++ ++ CL+M+ S+F PP + +
Sbjct: 109 LISILLRLQWLSRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVVIKEGDID 168
Query: 147 HGLERKHQV-----LSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVY 201
H AL+ I VP P L+PI+V++ P V L+ Y
Sbjct: 169 VSDSDDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLE---CY 225
Query: 202 MENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILH-----------DDFSKGI 250
+ N L++ S +R +L V+++L+ LD+ DI D ++G+
Sbjct: 226 VHNLLRI--SVYFPTLRHEILELVIEKLLKLDVSASRQDIEDAEEIAAQTGSGTDATEGL 283
Query: 251 FEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLES-CEGTG 309
F M+ ++V E A+ R + + +AE LD L+ L +++ C G
Sbjct: 284 FNMDEDEVTEHETKADP----------ERLNQMVHPVAERLDILLSLLLSYIKDVCYVDG 333
Query: 310 RL----------------------------IEFVMFYACALDPENCGLRFATMLADVFVS 341
++ ++F MFY C+ F A+ F+
Sbjct: 334 KIDINKTKDLYRDLIIIFDKLLLPTHASCHVQFFMFYLCS---------FKLGFAEAFLE 384
Query: 342 GLY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDI 393
L+ P + R +A +Y+ S L+RA+++ + S L LV+W Y N D
Sbjct: 385 HLWKKLQDPNNPAIIRQAAGNYIGSLLARAKYIPLITVKSCLDLLVNWLHLYLN--NQDS 442
Query: 394 NPKA------HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP---LETVLKHDLNP 444
KA H FYS CQA+ Y FR + ++ LK L + E ++ LNP
Sbjct: 443 GTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLS-GNLKEGLRYLQSLNFERIVMSQLNP 501
Query: 445 LKVCLPSVVSEFLQ-QSKAARLFTVSETFVFNDLLESELSRAFGG------LERLDMFFP 497
LK+CLPSVV+ F SK +F + N + + GG LD FFP
Sbjct: 502 LKICLPSVVNFFAAITSKYQLVFCYTIIERNNRQMLPVIRNTAGGDSVQTCTNPLDTFFP 561
Query: 498 FDPCLLKKSDRF 509
FDPC+LK+S +F
Sbjct: 562 FDPCVLKRSKKF 573
>gi|449475705|ref|XP_004176687.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 isoform 2 [Taeniopygia guttata]
Length = 565
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 127/505 (25%), Positives = 224/505 (44%), Gaps = 80/505 (15%)
Query: 31 EALTSVQSGDNDNYNQLVAVMHLSGRLDPDNR-ALLETSLKALSGAVSYIDISHHESLLV 89
E L + GD ++ L + DPD + A + L +V+Y+ + LV
Sbjct: 24 EILLKYEKGDATDFELLKHQLS-----DPDIKDAQIINWLHEFRASVAYL--TKELGQLV 76
Query: 90 SIFGMSMW-NYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHG 148
+I W +V++ G + +L ++ ++ CL M+VS F PP + +
Sbjct: 77 NILLKLPWLRRSREVVEEYLGFLGNLVSAQTVHLRPCLRMIVSQFVPPRITIREDDVDIS 136
Query: 149 L-----ERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYME 203
E + H AL+++ VP P L+PI+V+ P + NK ER + Y+
Sbjct: 137 DSDDDDENISENFDTCHRALQTVARYVPSTPQFLMPILVEFFPFI-NKSER--TLECYVH 193
Query: 204 NTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAAD 263
N L++ + +R +L ++++L+ LD+ DI + + E + EE
Sbjct: 194 NLLRV--TVYLPTLRLQILELIIEKLLKLDVSTPQQDIEDAEETANNCASEEKSTEEGLF 251
Query: 264 DAEQ----VGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLES-CEGTGRL------- 311
D E+ G+++ S S+ R + + +AE LD LM + F ++ C G+L
Sbjct: 252 DMEEDEDGKGNKVVSPSIERMA---HPLAERLDILMTILFSYIRDVCHVDGKLNISNTKD 308
Query: 312 ---------------------IEFVMFYACALDPENCGLRFATMLADVFVSGLY------ 344
+++ MFY C+ F A+ F+ L+
Sbjct: 309 LYRDLVSVFDKLILPTHASCHVQYFMFYICS---------FKLGFAEAFLDHLWKKLQDP 359
Query: 345 --PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA----H 398
P + R +A SY+ SFL+RA+F+ + + L LV+W +Y + N H
Sbjct: 360 NNPSVIRQTAGSYIGSFLARAKFIPIVTVKACLDLLVNWLHKYIDNQDKGANAYCDVALH 419
Query: 399 RVFYSGCQAIMYVLCFRMRSIMD--IPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEF 456
FYS CQA+ Y L FR + ++D + + S L + E ++ LNPLK+C+PSVV+ F
Sbjct: 420 GPFYSTCQAVFYTLIFRHKQLLDGNLRKGLSYLQSLNFERIVMCQLNPLKICIPSVVNLF 479
Query: 457 LQQSKAARLFTVSETFVFNDLLESE 481
+++ + T+ + F + L +E
Sbjct: 480 AAITRSKK--TIDPMYQFWEELSAE 502
>gi|194381126|dbj|BAG64131.1| unnamed protein product [Homo sapiens]
Length = 552
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 127/498 (25%), Positives = 205/498 (41%), Gaps = 104/498 (20%)
Query: 85 ESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLK 144
E L+ I + N V++ + +L ++ ++ CL+M+ S+F PP + +
Sbjct: 8 EQLISIILRLPWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGD 67
Query: 145 EPHGLERKHQV-----LSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIV 199
H AL+ I VP P L+PI+V++ P V L+
Sbjct: 68 VDVSDSDDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLE--- 124
Query: 200 VYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVE 259
Y+ N L++ S +R +L ++++L+ LD+ +GI ED E
Sbjct: 125 CYVHNLLRI--SVYFPTLRHEILELIIEKLLKLDVNAS---------RQGI-----EDAE 168
Query: 260 EAA-------DDAEQVGDELPSGSLSRKSLSG--------NLIAELLDSLMVLTFEHLES 304
E A D E + + ++ +G + +AE LD LM L +++
Sbjct: 169 ETATQTCGGTDSTEGLFNMDEDEETEHETKAGPERLDQMVHPVAERLDILMSLVLSYMKD 228
Query: 305 -CEGTGRL----------------------------IEFVMFYACALDPENCGLRFATML 335
C G++ ++F MFY C+ F
Sbjct: 229 VCYVDGKVDNGKTKDLYRDLINIFDKLLLPTHASCHVQFFMFYLCS---------FKLGF 279
Query: 336 ADVFVSGLY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCN 387
A+ F+ L+ P + R +A +Y+ SFL+RA+F+ + S L LV+W Y N
Sbjct: 280 AEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLLVNWLHIYLN 339
Query: 388 ILGGDINPKA------HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP---LETVL 438
D KA H FYS CQA+ Y FR + ++ LK L + E ++
Sbjct: 340 --NQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLS-GNLKEGLQYLQSLNFERIV 396
Query: 439 KHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER------- 491
LNPLK+CLPSVV+ F + +L N+ + R+ G +
Sbjct: 397 MSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQICTNP 456
Query: 492 LDMFFPFDPCLLKKSDRF 509
LD FFPFDPC+LK+S +F
Sbjct: 457 LDTFFPFDPCVLKRSKKF 474
>gi|221040220|dbj|BAH14891.1| unnamed protein product [Homo sapiens]
Length = 621
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 133/549 (24%), Positives = 227/549 (41%), Gaps = 102/549 (18%)
Query: 30 REALTSVQSGDNDNYNQLV-AVMHLSGRLDPDNRALLETSLKALSGAVSYIDISHHESLL 88
R ++++++ +ND +N + G + E LK G + ++ ++ L
Sbjct: 28 RTGISNMRALENDFFNSPPRKTVRFGG-------TVTEVLLKYKKGETNDFELLKNQLLD 80
Query: 89 VSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHG 148
I + N V++ + +L ++ ++ CL+M+ S+F PP + +
Sbjct: 81 PDIKRLPWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGDVDVS 140
Query: 149 LERKHQV-----LSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYME 203
H AL+ I VP P L+PI+V++ P V L+ Y+
Sbjct: 141 DSDDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLE---CYVH 197
Query: 204 NTLKLESSAMGELVRSTLLMAVVDRLIDLDM-----------EIGWDDILHDDFSKGIFE 252
N L++ S +R +L ++++L+ LD+ E D ++G+F
Sbjct: 198 NLLRI--SVYFPTLRHEILELIIEKLLKLDVNASRQGIEDAEETATQTFGGTDSTEGLFN 255
Query: 253 MELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLES-CEGTGRL 311
M+ ++ E A G E R + +AE LD LM L +++ C G++
Sbjct: 256 MDEDEETEHETKA---GPE-------RLDQMVHPVAERLDILMSLVLSYMKDVCYVDGKV 305
Query: 312 ----------------------------IEFVMFYACALDPENCGLRFATMLADVFVSGL 343
++F MFY C+ F A+ F+ L
Sbjct: 306 DNGKTKDLYRDLMNIFDKLLLPTHASCHVQFFMFYLCS---------FKLGFAEAFLEHL 356
Query: 344 Y--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINP 395
+ P + R +A +Y+ SFL+RA+F+ + S L LV+W Y N D
Sbjct: 357 WKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLLVNWLHIYLN--NQDSGT 414
Query: 396 KA------HRVFYSGCQAIMYVLCFRMRSIM--DIPRLKSQLLLMPLETVLKHDLNPLKV 447
KA H FYS CQA+ Y FR + ++ ++ L + E ++ LNPLK+
Sbjct: 415 KAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLKEGLQYLQSLNFERIVMSQLNPLKI 474
Query: 448 CLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER-------LDMFFPFDP 500
CLPSVV+ F + +L N+ + R+ G + LD FFPFDP
Sbjct: 475 CLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQICTNPLDTFFPFDP 534
Query: 501 CLLKKSDRF 509
C+LK+S +F
Sbjct: 535 CVLKRSKKF 543
>gi|332845340|ref|XP_001143837.2| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 isoform 1 [Pan troglodytes]
Length = 552
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 127/498 (25%), Positives = 205/498 (41%), Gaps = 104/498 (20%)
Query: 85 ESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLK 144
E L+ I + N V++ + +L ++ ++ CL+M+ S+F PP + +
Sbjct: 8 EQLISIILRLPWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGD 67
Query: 145 EPHGLERKHQV-----LSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIV 199
H AL+ I VP P L+PI+V++ P V L+
Sbjct: 68 VDVSDSDDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLE--- 124
Query: 200 VYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVE 259
Y+ N L++ S +R +L ++++L+ LD+ +GI ED E
Sbjct: 125 CYVHNLLRI--SVYFPTLRHEILELIIEKLLKLDVNAS---------RQGI-----EDAE 168
Query: 260 EAA-------DDAEQVGDELPSGSLSRKSLSG--------NLIAELLDSLMVLTFEHLES 304
E A D E + + ++ +G + +AE LD LM L +++
Sbjct: 169 ETATQTCGGTDSTEGLFNMDEDEETEHETKAGPERLDQMVHPVAERLDILMSLVLSYMKD 228
Query: 305 -CEGTGRL----------------------------IEFVMFYACALDPENCGLRFATML 335
C G++ ++F MFY C+ F
Sbjct: 229 VCYVDGKVDNGKTKDLYRDLINIFDKLLLPTHASCHVQFFMFYLCS---------FKLGF 279
Query: 336 ADVFVSGLY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCN 387
A+ F+ L+ P + R +A +Y+ SFL+RA+F+ + S L LV+W Y N
Sbjct: 280 AEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLLVNWLHIYLN 339
Query: 388 ILGGDINPKA------HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP---LETVL 438
D KA H FYS CQA+ Y FR + ++ LK L + E ++
Sbjct: 340 --NQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLS-GNLKEGLQYLQSLNFERIV 396
Query: 439 KHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER------- 491
LNPLK+CLPSVV+ F + +L N+ + R+ G +
Sbjct: 397 MSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQTCTNP 456
Query: 492 LDMFFPFDPCLLKKSDRF 509
LD FFPFDPC+LK+S +F
Sbjct: 457 LDTFFPFDPCVLKRSKKF 474
>gi|194390518|dbj|BAG62018.1| unnamed protein product [Homo sapiens]
Length = 621
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 135/550 (24%), Positives = 227/550 (41%), Gaps = 104/550 (18%)
Query: 30 REALTSVQSGDNDNYNQLV-AVMHLSGRLDPDNRALLETSLKALSGAVSYIDISHHESLL 88
R ++++++ +ND +N + G + E LK G + ++ ++ L
Sbjct: 28 RTGISNMRALENDFFNSPPRKTVRFGG-------TVTEVLLKYKKGETNDFELLKNQLLD 80
Query: 89 VSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHG 148
I + N V++ + +L ++ ++ CL+M+ S+F PP + +
Sbjct: 81 PDIKRLPWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGDVDVS 140
Query: 149 LERKHQV-----LSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYME 203
H AL+ I VP P L+PI+V++ P V L+ Y+
Sbjct: 141 DSDDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLE---CYVH 197
Query: 204 NTLKLESSAMGELVRSTLLMAVVDRLIDLDM-----------EIGWDDILHDDFSKGIFE 252
N L++ S +R +L ++++L+ LD+ E D ++G+F
Sbjct: 198 NLLRI--SVYFPTLRHEILELIIEKLLKLDVNASRQGIEDAEETATQTCGGTDSTEGLFN 255
Query: 253 MELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLES-CEGTGRL 311
M+ ++ E A G E R + +AE LD LM L +++ C G++
Sbjct: 256 MDEDEETEHETKA---GPE-------RLDQMVHPVAERLDILMSLVLSYMKDVCYVDGKV 305
Query: 312 ----------------------------IEFVMFYACALDPENCGLRFATMLADVFVSGL 343
++F MFY C+ F A+ F+ L
Sbjct: 306 DNGKTKDLYRDLINIFDKLLLPTHASCHVQFFMFYLCS---------FKLGFAEAFLEHL 356
Query: 344 Y--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINP 395
+ P + R +A +Y+ SFL+RA+F+ + S L LV+W Y N D
Sbjct: 357 WKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLLVNWLHIYLN--NQDSGT 414
Query: 396 KA------HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP---LETVLKHDLNPLK 446
KA H FYS CQA+ Y FR + ++ LK L + E ++ LNPLK
Sbjct: 415 KAFCDVALHGPFYSACQAVFYTFVFRHKQLLS-GNLKEGLQYLQSLNFERIVMSQLNPLK 473
Query: 447 VCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER-------LDMFFPFD 499
+CLPSVV+ F + +L N+ + R+ G + LD FFPFD
Sbjct: 474 ICLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQICTNPLDTFFPFD 533
Query: 500 PCLLKKSDRF 509
PC+LK+S +F
Sbjct: 534 PCVLKRSKKF 543
>gi|426254335|ref|XP_004020834.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 [Ovis aries]
Length = 651
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 125/488 (25%), Positives = 200/488 (40%), Gaps = 84/488 (17%)
Query: 85 ESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLK 144
E L+ + + N V++ + +L ++ ++ CL+M+ S+F PP + +
Sbjct: 107 EQLINILLRLQWLNRSQTVVEEYLSFLGNLVSAQTVFLRPCLSMIASHFVPPRVVIKEGD 166
Query: 145 EPHGLERKHQV-----LSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIV 199
H AL+ I VP P L+PI+V++ P V L+
Sbjct: 167 VDVSDSDDEDENLPANFDTCHRALQIIAKYVPSTPWFLMPILVEKFPFVRKSERTLE--- 223
Query: 200 VYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILH-----------DDFSK 248
Y+ N L++ S +R +L VV++L+ LD+ DI D ++
Sbjct: 224 CYVHNLLRI--SVYFPTLRHEILELVVEKLLKLDVNASRQDIEDAEETAAQTGGGADATE 281
Query: 249 GIFEMELEDVEEAADDAEQVG----DELPSGSLSR-------------------KSLSGN 285
+F M D +E AD + D++ R + N
Sbjct: 282 ALFNM---DEDEEADHKTEADPGRLDQMVHPMAERLDILLSLLLSYIKDVCYVDGKIDNN 338
Query: 286 LIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLY- 344
+L L+ + F+ L ++F MFY C+ F A+ F+ L+
Sbjct: 339 KTKDLYRDLITI-FDKLLLPTHASCHVQFFMFYLCS---------FKLGFAEAFLEHLWK 388
Query: 345 -------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA 397
P + R +A +Y+ SFL+RA+F+ + S L LV+W Y N D KA
Sbjct: 389 KLQDPNNPAIIRQAAANYIGSFLARAKFIPLITVKSCLDLLVNWLHVYLN--NQDSGTKA 446
Query: 398 ------HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP---LETVLKHDLNPLKVC 448
H FYS CQA+ Y FR + ++ LK L + E ++ LNPLK+C
Sbjct: 447 FCDVALHGPFYSACQAVFYTFVFRHKQLLS-GNLKEGLRYLQSLNFERIVMSQLNPLKIC 505
Query: 449 LPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER-------LDMFFPFDPC 501
LPSVV+ F + +L N+ + R G + LD FFPFDPC
Sbjct: 506 LPSVVNFFAAITNKYQLVFCYTLIERNNRQMLPVIRNTAGGDSVQTCTNPLDTFFPFDPC 565
Query: 502 LLKKSDRF 509
+LK+S +F
Sbjct: 566 VLKRSKKF 573
>gi|329112520|ref|NP_001179361.2| RNA polymerase I-specific transcription initiation factor RRN3 [Bos
taurus]
gi|296473372|tpg|DAA15487.1| TPA: RRN3 RNA polymerase I transcription factor homolog [Bos
taurus]
Length = 651
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 128/501 (25%), Positives = 203/501 (40%), Gaps = 110/501 (21%)
Query: 85 ESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLK 144
E L+ + + N V++ + +L ++ ++ CL+M+ S+F PP + +
Sbjct: 107 EQLINILLRLKWLNRSQTVVEEYLSFLGNLVSAQTVFLRPCLSMIASHFVPPRVVIKEGD 166
Query: 145 EPHGLERKHQV-----LSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIV 199
H AL+ I VP P L+PI+V++ P V L+
Sbjct: 167 VDVSDSDDEDENLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLE--- 223
Query: 200 VYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVE 259
Y+ N L++ S +R +L VV++L+ LD+ +D+E
Sbjct: 224 CYIHNLLRI--SVYFPTLRHEILELVVEKLLKLDVNAS-----------------RQDIE 264
Query: 260 EAADDAEQVG------------DELPSGSLSRKSLSGNL------IAELLDSLMVLTFEH 301
+A + A Q G DE K+ G L +AE LD L+ L +
Sbjct: 265 DAEETAAQTGGGADATEALFNMDEDEEADHETKADPGRLDQMVHPMAERLDILLSLLLSY 324
Query: 302 LES-CEGTGRL----------------------------IEFVMFYACALDPENCGLRFA 332
++ C G++ ++F MFY C+ F
Sbjct: 325 IKDVCYVDGKIDNNKTKDLYRDLITIFDKLLLPTHASCHVQFFMFYLCS---------FK 375
Query: 333 TMLADVFVSGLY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLE 384
A+ F+ L+ P + R +A +Y+ SFL+RA+F+ + S L LV+W
Sbjct: 376 LGFAEAFLEHLWKKLQDPNNPAIIRQAAANYIGSFLARAKFIPLITVKSCLDLLVNWLHV 435
Query: 385 YCNILGGDINPKA------HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP---LE 435
Y N D KA H FYS CQA+ Y FR + ++ LK L + E
Sbjct: 436 YLN--NQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLS-GNLKEGLRYLQSLNFE 492
Query: 436 TVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER---- 491
++ LNPLK+CLPSVV+ F + +L N+ + R G +
Sbjct: 493 RIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTLIERNNRQMLPVIRNTAGGDSVQTC 552
Query: 492 ---LDMFFPFDPCLLKKSDRF 509
LD FFPFDPC+LK+S +F
Sbjct: 553 TNPLDTFFPFDPCVLKRSKKF 573
>gi|395517474|ref|XP_003762901.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 [Sarcophilus harrisii]
Length = 580
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 137/543 (25%), Positives = 228/543 (41%), Gaps = 92/543 (16%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNR-ALLETSLKALSGAVSYIDISHHESL 87
V + L + GD +++ L + DPD + A + L +V+Y+ E L
Sbjct: 64 VTDILLKYKKGDTNDFELLKHQLS-----DPDIKDAQIINWLLEFRNSVTYL-TKDFEQL 117
Query: 88 LVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFL------- 140
+ + + +V++ + +L ++ Y+ CL+M+VS+F P +
Sbjct: 118 ISILLKLPWLKRSKEVLEEYLAFLGNLVSAQTVYLRPCLSMIVSHFIPSRVIIKEGDTTI 177
Query: 141 -DKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIV 199
D E L H AL+ I VP P L+PI+V++ P + K ER+ +
Sbjct: 178 SDSDDEDENLPAN---FDTCHRALQLIARYVPSTPWFLMPILVEKFPFIR-KSERI--LE 231
Query: 200 VYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVE 259
Y+ N L++ S +R +L V+++L+ +D+ D+ + ++ +
Sbjct: 232 CYVHNLLRI--SVYFPTLRPEILELVIEKLLKMDVSASRQDVEDAEDAEEAAVQTNNGTD 289
Query: 260 EAA-----DDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLES-CEGTGRL-- 311
A D+ E+ DE + + +AE LD L+ L F +++ C G +
Sbjct: 290 TAERLFNMDEDEETKDER-KDDFGKSDRMAHPVAERLDILLSLLFSYIKDICYKNGEIDI 348
Query: 312 --------------------------IEFVMFYACALDPENCGLRFATMLADVFVSGLY- 344
I+F MFY C+ F A+ F+ L+
Sbjct: 349 NKTKDLYRDLLGIFDKLVLPTHASCHIQFFMFYLCS---------FKLGFAEAFLEHLWK 399
Query: 345 -------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA 397
P + R +A +Y+ S L+RA+F+ + + L LV W Y + D KA
Sbjct: 400 KLQNPNNPAILRQAAGNYIGSLLARAKFVPIITVKTCLDLLVHWLHIYLD--NQDAGTKA 457
Query: 398 ------HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPL--ETVLKHDLNPLKVCL 449
H FYS CQA+ Y FR + ++D K L L E ++ LNPLK+CL
Sbjct: 458 FCDVALHGPFYSACQAVFYTFVFRHKQLLDGNLRKGLAYLQSLNFERIVMSQLNPLKICL 517
Query: 450 PSVVSEFLQQSKAARLFTVSETFVFND--LLESELSRAFGG-----LERLDMFFPFDPCL 502
PSVV+ F ++ +L N+ +L + A GG LD FFPFDPC+
Sbjct: 518 PSVVNLFAAITRKYQLVFCYTIIERNNRQMLPVLRNTAGGGSVQTCTNPLDTFFPFDPCV 577
Query: 503 LKK 505
LK+
Sbjct: 578 LKR 580
>gi|440896809|gb|ELR48636.1| RNA polymerase I-specific transcription initiation factor RRN3 [Bos
grunniens mutus]
Length = 651
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 128/501 (25%), Positives = 203/501 (40%), Gaps = 110/501 (21%)
Query: 85 ESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLK 144
E L+ + + N V++ + +L ++ ++ CL+M+ S+F PP + +
Sbjct: 107 EQLINILLRLKWLNRSQTVVEEYLSFLGNLVSAQTVFLRPCLSMIASHFVPPRVVIKEGD 166
Query: 145 EPHGLERKHQV-----LSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIV 199
H AL+ I VP P L+PI+V++ P V L+
Sbjct: 167 VDVSDSDDEDENLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLE--- 223
Query: 200 VYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVE 259
Y+ N L++ S +R +L VV++L+ LD+ +D+E
Sbjct: 224 CYVHNLLRI--SVYFPTLRHEILELVVEKLLKLDVNAS-----------------RQDIE 264
Query: 260 EAADDAEQVG------------DELPSGSLSRKSLSGNL------IAELLDSLMVLTFEH 301
+A + A Q G DE K+ G L +AE LD L+ L +
Sbjct: 265 DAEETAAQTGGGADATEALFNMDEDEEADHETKADPGRLDQMVHPMAERLDILLSLLLSY 324
Query: 302 LES-CEGTGRL----------------------------IEFVMFYACALDPENCGLRFA 332
++ C G++ ++F MFY C+ F
Sbjct: 325 IKDVCYVDGKIDNNKTKDLYRDLITIFDKLLLPTHASCHVQFFMFYLCS---------FK 375
Query: 333 TMLADVFVSGLY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLE 384
A+ F+ L+ P + R +A +Y+ SFL+RA+F+ + S L LV+W
Sbjct: 376 LGFAEAFLEHLWKKLQDPNNPAIIRQAAANYIGSFLARAKFIPLITVKSCLDLLVNWLHV 435
Query: 385 YCNILGGDINPKA------HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP---LE 435
Y N D KA H FYS CQA+ Y FR + ++ LK L + E
Sbjct: 436 YLN--NQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLS-GNLKEGLRYLQSLNFE 492
Query: 436 TVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER---- 491
++ LNPLK+CLPSVV+ F + +L N+ + R G +
Sbjct: 493 RIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTLIERNNRQMLPVIRNTAGGDSVQTC 552
Query: 492 ---LDMFFPFDPCLLKKSDRF 509
LD FFPFDPC+LK+S +F
Sbjct: 553 TNPLDTFFPFDPCVLKRSKKF 573
>gi|303272645|ref|XP_003055684.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463658|gb|EEH60936.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 396
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 83/251 (33%), Positives = 120/251 (47%), Gaps = 59/251 (23%)
Query: 310 RLIEFVMFYACALDP------ENCGLRFATMLADVFVSGL----YPPLTRMSAVSYLASF 359
+ +F++F+ACA D E G A+ + +V + L +PP R++A +YLASF
Sbjct: 40 KFTQFILFHACARDAAGIQGNEGEGGELASRVVEVLLERLTDPHHPPAGRLAATAYLASF 99
Query: 360 LSRARFLSPCFIVSLLKRLVDWCL---EYCNILGGDINPKAHRVFYSGCQAIMYVLCFRM 416
L+RA FLS F+ S+L+RL WC+ E+ N + VF S CQA+MYVLC+RM
Sbjct: 100 LARATFLSAAFMSSVLRRLTAWCVATREFANASSATLA-----VFDSACQALMYVLCYRM 154
Query: 417 RSIMDIP-RLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFN 475
I+D+ + L +PL +L LNP CLPSVV+EFL ++ A + E +
Sbjct: 155 TDILDVGDEPATTLRALPLREILYSKLNPTHTCLPSVVTEFLHRAVEAGVDGFDEQLLEK 214
Query: 476 D----------------------------------------LLESELSRAFGGLERLDMF 495
+L SE++ A L MF
Sbjct: 215 HRRERKEKDAATAGGGGNGGNGGNGGNGNGNAALARTQSTVVLGSEVAEAVRHRRPLRMF 274
Query: 496 FPFDPCLLKKS 506
FPFDP LL++S
Sbjct: 275 FPFDPYLLRRS 285
>gi|291390702|ref|XP_002711789.1| PREDICTED: RRN3 RNA polymerase I transcription factor homolog
[Oryctolagus cuniculus]
Length = 658
Score = 125 bits (313), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 131/495 (26%), Positives = 206/495 (41%), Gaps = 98/495 (19%)
Query: 85 ESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLK 144
E L+ + + N V++ + +L ++ ++ CL+M+ S+F PP + +
Sbjct: 107 EQLINILLKLPWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGD 166
Query: 145 EPHGLERKHQV-----LSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIV 199
H AL+ I VP AP L+PI+V++ P V L+
Sbjct: 167 IDVSDSDDEDDNLPGNFDTCHRALQIIARYVPSAPWFLMPILVEKFPFVRKSERTLE--- 223
Query: 200 VYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILH-----------DDFSK 248
Y+ N L++ S +R +L V+++L+ LD+ DI D ++
Sbjct: 224 CYVHNLLRI--SVYFPTLRHEILELVIEKLLKLDVNAPRQDIEDAEETAAQTCGGTDSTE 281
Query: 249 GIFEMEL---------EDVEEAADDAEQVGDELP----------------SGSLSR---K 280
G+F M+ D E V + L G + K
Sbjct: 282 GLFNMDEDEETEHETKADPERLDQMVHPVAERLDILLSLLLSYIKDVCSVDGKIDNNKTK 341
Query: 281 SLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFV 340
L +LI + D L++ T SC ++F MFY C+ F A+ F+
Sbjct: 342 DLYRDLIT-IFDKLLLPTHA---SCH-----VQFFMFYLCS---------FKLGFAEAFL 383
Query: 341 SGLY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGD 392
L+ P + R +A +Y+ SFL+RA+F+ + S L LV+W Y N D
Sbjct: 384 EHLWKKLQDPNNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLLVNWLHVYLN--NQD 441
Query: 393 INPKA------HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP---LETVLKHDLN 443
KA H FYS CQA+ Y FR + ++ LK L + E ++ LN
Sbjct: 442 SGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLS-GNLKEGLRYLQSLNFERIVMSQLN 500
Query: 444 PLKVCLPSVVSEFLQQSKAARL---FTVSETFVFNDLLESELSRAFGG------LERLDM 494
PLK+CLPSVV+ F + +L +T+ E N + + GG LD
Sbjct: 501 PLKICLPSVVNFFAAITNKYQLVFCYTIIER--NNRQMLPVIRNTAGGDSVQTCTNPLDT 558
Query: 495 FFPFDPCLLKKSDRF 509
FFPFDPC+LK+S +F
Sbjct: 559 FFPFDPCVLKRSKKF 573
>gi|296219593|ref|XP_002755949.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 isoform 2 [Callithrix jacchus]
Length = 621
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 131/549 (23%), Positives = 226/549 (41%), Gaps = 102/549 (18%)
Query: 30 REALTSVQSGDNDNYNQLV-AVMHLSGRLDPDNRALLETSLKALSGAVSYIDISHHESLL 88
R ++S+ + +ND +N + G + E LK G + ++ ++ L
Sbjct: 28 RTGISSMLALENDFFNSPPRKTVRFGG-------TVTEVLLKYKKGETNDFELLKNQLLD 80
Query: 89 VSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHG 148
I + N V++ + +L ++ ++ CL+M+ S+F PP +
Sbjct: 81 PDIKRLPWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKDGNVDVS 140
Query: 149 LERKHQV-----LSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYME 203
H AL+ I VP P L+PI+V++ P V L+ Y+
Sbjct: 141 DSDDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLE---CYVH 197
Query: 204 NTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILH-----------DDFSKGIFE 252
N L++ S +R +L ++++L+ LD+ DI D ++G+F
Sbjct: 198 NLLRI--SVYFPTLRHEILELIIEKLLKLDVSASRQDIEDAEETAAQTCGGTDSTEGLFN 255
Query: 253 MELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLES-CEGTGRL 311
M+ ++ E A+ R + +AE LD LM L +++ C G++
Sbjct: 256 MDEDEETEHETRADP----------KRLDQMVHPVAERLDILMSLLLSYMKDVCYVDGKV 305
Query: 312 ----------------------------IEFVMFYACALDPENCGLRFATMLADVFVSGL 343
++F+MFY C+ F A+ F+ L
Sbjct: 306 DNGKTKDLYRNLINIFDKLLLPTHASCHVQFLMFYLCS---------FKLGFAEAFLEHL 356
Query: 344 Y--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINP 395
+ P + R +A +Y+ SFL+RA+F+ + S L +V+W Y + D
Sbjct: 357 WKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLMVNWLHIYLH--NQDSGT 414
Query: 396 KA------HRVFYSGCQAIMYVLCFRMRSIM--DIPRLKSQLLLMPLETVLKHDLNPLKV 447
KA H FYS CQA+ Y FR + ++ ++ L + E ++ LNPLK+
Sbjct: 415 KAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLKEGLQYLQSLNFERIVMSQLNPLKI 474
Query: 448 CLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER-------LDMFFPFDP 500
CLPSVV+ F + +L N+ + R+ G + LD FFPFDP
Sbjct: 475 CLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQTCTNPLDTFFPFDP 534
Query: 501 CLLKKSDRF 509
C+LK+S +F
Sbjct: 535 CVLKRSKKF 543
>gi|49119515|gb|AAH73661.1| LOC443681 protein, partial [Xenopus laevis]
Length = 636
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 123/497 (24%), Positives = 215/497 (43%), Gaps = 76/497 (15%)
Query: 69 LKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTM 128
L V+Y+ +E L+ + + N +V++ + +L ++ Y+ SCL M
Sbjct: 83 LHEFRSCVTYL-TKDYEQLVSIVLKLPWLNRSKNVVEEYLSFLGNLVSAQTVYLRSCLIM 141
Query: 129 LVSNFTPPSYFL-----DKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQ 183
++S+ P + D E + H AL+ I VP AP L+PI+V+
Sbjct: 142 IISHIVPARVIIREGDVDISDSDDESEDIISTFNTCHRALQIIARYVPSAPRFLMPILVE 201
Query: 184 RMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDIL- 242
+ P NK R + Y+ N L++ + +R +L V+++L+ +D+ I
Sbjct: 202 KFPYT-NKSAR--TLECYVHNLLRI--TVYFPTLRLEILELVIEKLLKIDVSASRQTIEE 256
Query: 243 ----------HDDFSKGIFEMELEDVEEAADD-------AEQVGDEL-----------PS 274
+ +G+F M+ ED++E + A V + L
Sbjct: 257 AEEAAFQAGGEQNKEEGLFNMD-EDLQEISTTPVVSESMAHPVAERLDILILTLCSYIKD 315
Query: 275 GSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATM 334
L+ +L N +L L+ + F+ L +++ MFY C+ F
Sbjct: 316 ICLTNDTLDLNKTKDLYRDLLAV-FDKLILPTHASSHVQYCMFYICS---------FKLG 365
Query: 335 LADVFVSGLY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYC 386
+A+ F+ L+ PP+ R +A +Y+ SFL+RA+F+ + + L LV+W Y
Sbjct: 366 IAEAFLEHLWKKLQNPNNPPVIRQAAANYIGSFLARAKFIPLVTVKACLDLLVNWLHGY- 424
Query: 387 NILGGDINPKA------HRVFYSGCQAIMYVLCFRMRSIM--DIPRLKSQLLLMPLETVL 438
I D +A H FY+ QA+ Y FR + + ++ + + L + LE ++
Sbjct: 425 -IDNQDAGSRAYCDVTVHGPFYAASQAVFYSFIFRHKQFLEGNLRKGLTYLQNLNLERIV 483
Query: 439 KHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGG-------LER 491
LNPLK+CLPSVV+ F ++ +L N+ + R+ G
Sbjct: 484 MCQLNPLKICLPSVVNFFAAITRKYQLVFCYTIIERNNRQMIPIVRSSTGGDSVQVSFNP 543
Query: 492 LDMFFPFDPCLLKKSDR 508
LD FFPFDPC+LK+ +
Sbjct: 544 LDSFFPFDPCILKRCKK 560
>gi|410901877|ref|XP_003964421.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Takifugu rubripes]
Length = 611
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 129/544 (23%), Positives = 236/544 (43%), Gaps = 93/544 (17%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNR-ALLETSLKALSGAVSYIDISHHESL 87
V E L + GD+ +Y+ L + DP + A + + L+ + VS ++ HE L
Sbjct: 23 VSEILAKHEQGDSSDYDLLKHQL-----ADPCIKDAQIISWLQEIRSCVSQLN-KDHEQL 76
Query: 88 LVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTP-------PSYFL 140
+ ++ + V++ + +L ++ Y+ +CL M+V+ FTP +
Sbjct: 77 IYTVLKLPWIGRRQAVVEEYMTFLGNLVSAQTVYLCACLKMVVTYFTPMRVRICVEGVNI 136
Query: 141 DKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVV 200
++ E + + H AL+ I VP L+P+ + P + L+
Sbjct: 137 SDSEDEDEYENLSRNFDQCHKALQLIARYVPSTSHFLMPVFQENFPFIQKSSRTLE---C 193
Query: 201 YMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEE 260
Y+ N L++ S +R +L ++ +++ LD+ DI + E+ +++++
Sbjct: 194 YVHNLLRV--SVYIPSIRRDILELIIGKMLQLDVSASRSDIEEAE------EIAMQNLQG 245
Query: 261 AADDAEQVGD---ELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLES-CEGTGRL----- 311
E + D ++P+ S +++ + +AE LD+LM + +++ C G L
Sbjct: 246 HPLKEEGLFDMDEDMPANP-STMAVTSHSVAERLDTLMAVLMAYVKDICHVNGSLHVERT 304
Query: 312 -----------------------IEFVMFYACALDPENCGLRFATMLADVFVSGLY---- 344
+++++FY C+ F L + F+ L+
Sbjct: 305 KELYRDLLSVFDKLILPTHASCHVQYILFYLCS---------FRLALTEAFLDHLWKILQ 355
Query: 345 ----PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGG-------DI 393
P + R +A YL SFL+RA+F+ + + L L+ W Y + DI
Sbjct: 356 NPSQPAILRQAAAGYLGSFLARAKFIPVLTVRACLDLLISWIHGYIDSQNSSGKQACCDI 415
Query: 394 NPKAHRVFYSGCQAIMYVLCFRMRSIMD--IPRLKSQLLLMPLETVLKHDLNPLKVCLPS 451
N H FYS CQA+ YVL FR R++++ + + L + LE V+ LNPLK+CLP+
Sbjct: 416 N--LHGPFYSTCQAVFYVLIFRHRALLEGHMKKGLEYLQSLNLERVVMCQLNPLKLCLPT 473
Query: 452 VVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGG-------LERLDMFFPFDPCLLK 504
V S F ++ ++ N+ + R+ G LD FFPFDP LLK
Sbjct: 474 VTSMFAAITRKYQIVFCYNVIERNNRQLLPVVRSSTGGDCVTTKTNPLDSFFPFDPYLLK 533
Query: 505 KSDR 508
+S +
Sbjct: 534 RSGQ 537
>gi|170049642|ref|XP_001870906.1| RNA polymerase I-specific transcription initiation factor RRN3
[Culex quinquefasciatus]
gi|167871391|gb|EDS34774.1| RNA polymerase I-specific transcription initiation factor RRN3
[Culex quinquefasciatus]
Length = 603
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 123/450 (27%), Positives = 195/450 (43%), Gaps = 80/450 (17%)
Query: 105 DALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKE-----------PHGLERKH 153
+ KG +I L + G Y ++ LV F P D+ KE E H
Sbjct: 116 EVYKGFVIELLVAQGNYTTLAVSKLVQLFLP----RDEDKEGWVRGVPTVATAERFEPVH 171
Query: 154 QVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKL-ESSA 212
+ R+ + IFD++ + + P + H ++ Y+ NTL++ + SA
Sbjct: 172 DLFVRLKNVIPMIFDVILVQLRKQFPYFKR---ATH-------VVCGYVYNTLRMTDHSA 221
Query: 213 MGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDF-----SKGIFEMELEDVEEAADDAEQ 267
M LL + RL+ +D+ ++I +F IF ME V E DD
Sbjct: 222 M---FTEELLDIIFYRLVAIDVNTPRNEIEDAEFPDEADDGQIFAMEETPVIEIDDDETM 278
Query: 268 VGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCE----GTGRL------------ 311
+LP +AE LD + F ++E G+ R+
Sbjct: 279 ---KLP-------------LAETLDCCLETMFRYIEERARIEGGSDRVYGLLLKLFDKHI 322
Query: 312 --------IEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRA 363
++F+MFY C+ D ++ G RF L + + TR +AV Y+AS L+RA
Sbjct: 323 LPTHNTHHVQFLMFYCCSFD-QSYGERFIEHLLKMVRNPNISTPTRQAAVGYVASLLARA 381
Query: 364 RFLSPCFIVSLLKRLVDWCLEYCNILGGDINP--KAHRVFYSGCQAIMYVLCFRMRSIMD 421
+++ + L+ DW Y N N KAH VFYS CQAI YV+ FR + +
Sbjct: 382 KYVPMPLLKKTLQDFSDWVHGYLNRSDSLHNQSLKAHLVFYSVCQAIFYVVAFRSKQLTA 441
Query: 422 IPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESE 481
P+ + L + L ++ LNPL+VC+P V + F+ ++A ++ + N+ +
Sbjct: 442 TPKNLAFLQTLQLTSIANCLLNPLRVCVPGVATAFVAVARAHQIAYCNTIMERNERRRTF 501
Query: 482 LSRAFGGL---ERLDMFFPFDPCLLKKSDR 508
+ G L + LD FFPFDP LLKKS +
Sbjct: 502 ILFNNGALAPDDCLDTFFPFDPYLLKKSGK 531
>gi|209529668|ref|NP_001129318.1| RNA polymerase I-specific transcription initiation factor RRN3
[Rattus norvegicus]
gi|183986382|gb|AAI66485.1| Rrn3 protein [Rattus norvegicus]
Length = 661
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 121/492 (24%), Positives = 209/492 (42%), Gaps = 87/492 (17%)
Query: 85 ESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYF----- 139
E L+ I + N V++ + +L ++ ++ CL+M+ S+F PP
Sbjct: 105 EQLINIILRLPWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIVKEGG 164
Query: 140 LDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIV 199
+D + + H AL+ I VP P L+PI+V++ P V L+
Sbjct: 165 IDVSESEDEDDNLPANFDTCHKALQIITRYVPSTPWFLMPILVEKFPFVRKSERTLE--- 221
Query: 200 VYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILH-----------DDFSK 248
Y+ N L++ S +R +L ++++ + LD+ + DI D ++
Sbjct: 222 CYVHNLLRI--SLYFPTLRREILELIIEKSLKLDVSVSRQDIDDAEETAAQTYGGTDAAE 279
Query: 249 GIFEMELEDVEEAADDAEQVGDELPSGSLSRKS------------------------LSG 284
G+F M+ E+ D E+ ++ G ++ + +
Sbjct: 280 GLFNMD----EDEETDPEKKAEQERPGRMAHPTAERLDILLSLLLSYIDDVCHVQGKIDN 335
Query: 285 NLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATML---ADVFVS 341
N +L L+ + F+ L ++F MF+ C+ + + +L A+ F+
Sbjct: 336 NKTKDLYRDLISI-FDKLVLPTHASCHVQFFMFFLCSF-------KLSLLLQGFAEAFLE 387
Query: 342 GLY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDI 393
L+ P + R +A +Y+ SFL+RA+F+ + S L LV+W Y N D
Sbjct: 388 HLWKKLQDPNNPVIIRQAAANYIGSFLARAKFIPLITVKSCLDLLVNWLHLYLN--SQDS 445
Query: 394 NPKA------HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP---LETVLKHDLNP 444
KA H FYS CQA+ Y + FR + ++ LK L + E ++ LNP
Sbjct: 446 GTKAFCDVALHGPFYSACQAVFYTVVFRHKQLLS-GNLKEGLRYLQSLNFERIVLSQLNP 504
Query: 445 LKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER-------LDMFFP 497
LK+CLP VV+ F + +L N+ + R+ G + LD FFP
Sbjct: 505 LKICLPRVVNFFAAITNKYQLVFCYTIMERNNRQMLPVIRSTAGGDSVQTCTNPLDTFFP 564
Query: 498 FDPCLLKKSDRF 509
FDPC+LK+S +F
Sbjct: 565 FDPCMLKRSKKF 576
>gi|21706613|gb|AAH34110.1| Rrn3 protein, partial [Mus musculus]
Length = 513
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 118/455 (25%), Positives = 194/455 (42%), Gaps = 98/455 (21%)
Query: 125 CLTMLVSNFTPPSYFLDK-----LKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLP 179
CL+M+ S+F PP + + + + H AL+ I VP P L+P
Sbjct: 2 CLSMIASHFVPPRVIVKEGGIDVSDSDDEDDNLPAIFDTCHRALQIITRYVPSTPWFLMP 61
Query: 180 IVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWD 239
I+V++ P V L+ Y+ N L++ S +R +L V+++L+ LD+ +
Sbjct: 62 ILVEKFPFVRKSERTLE---CYVHNLLRI--SLYFPTLRREILELVIEKLLKLDVSVSRQ 116
Query: 240 DILH-----------DDFSKGIFEMELEDVEEAADDAEQVGDELPS-------------- 274
DI D ++G+F M D +E D ++ E P+
Sbjct: 117 DIEDAEEKAAQTCGGTDTTEGLFNM---DEDEDTDPEKKADQEQPNQMAHPTAERLDVLL 173
Query: 275 --------------GSLSR---KSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMF 317
G + K L +LI+ + D L++ T SC ++F MF
Sbjct: 174 CLLLSYIEDVCRVHGKIDNNKTKDLYRDLIS-IFDKLLLPTHA---SCH-----VQFFMF 224
Query: 318 YACALDPENCGLRFATMLADVFVSGLY--------PPLTRMSAVSYLASFLSRARFLSPC 369
+ C+ F A+ F+ L+ P + R +A +Y+ SFL+RA+F+
Sbjct: 225 FLCS---------FKLGFAEAFLEHLWKKLQDPNNPAIIRQAAANYIGSFLARAKFIPLI 275
Query: 370 FIVSLLKRLVDWCLEYCNILGGDINPKA------HRVFYSGCQAIMYVLCFRMRSIM--D 421
+ + L LV+W Y + D KA H FYS CQA+ Y + FR + ++ +
Sbjct: 276 TVKTCLDLLVNWLHMY--LTNQDSGTKAFCDVALHGPFYSACQAVFYTVVFRHKQLLSGN 333
Query: 422 IPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESE 481
+ + L + E ++ LNPLK+CLP VV+ F + +L N
Sbjct: 334 LKQGLQYLQSLNFERIVLSQLNPLKICLPQVVNFFAAITNKYQLVFCYTIMERNSRQMLP 393
Query: 482 LSRAFGGLER-------LDMFFPFDPCLLKKSDRF 509
+ R+ G + LD FFPFDPC+LK+S +F
Sbjct: 394 VIRSTAGGDSVQTCTNPLDTFFPFDPCVLKRSKKF 428
>gi|167555129|ref|NP_001107876.1| RRN3 RNA polymerase I transcription factor homolog [Xenopus laevis]
gi|84105561|gb|AAI11507.1| LOC443681 protein [Xenopus laevis]
Length = 612
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 124/497 (24%), Positives = 216/497 (43%), Gaps = 76/497 (15%)
Query: 69 LKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTM 128
L V+Y+ +E L+ + + N +V++ + +L ++ Y+ SCL M
Sbjct: 59 LHEFRSCVTYL-TKDYEQLVSIVLKLPWLNRSKNVVEEYLSFLGNLVSAQTVYLRSCLIM 117
Query: 129 LVSNFTPPSYFL-----DKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQ 183
++S+ P + D E + H AL+ I VP AP L+PI+V+
Sbjct: 118 IISHIVPARVIIREGDVDISDSDDESEDIISTFNTCHRALQIIARYVPSAPRFLMPILVE 177
Query: 184 RMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDM--------- 234
+ P NK R + Y+ N L++ + +R +L VV++L+ +D+
Sbjct: 178 KFPYT-NKSAR--TLECYVHNLLRI--TVYFPTLRLEILELVVEKLLKIDVSASRQTIEE 232
Query: 235 --EIGWDDILHDDFSKGIFEMELEDVEEAADD-------AEQVGDEL-----------PS 274
E + + +G+F M+ ED++E + A V + L
Sbjct: 233 GEEAAFQAGGEQNKEEGLFNMD-EDLQEISTTPVVSESMAHPVAERLDILILTLCSYIKD 291
Query: 275 GSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATM 334
L+ +L N +L L+ + F+ L +++ MFY C+ F
Sbjct: 292 ICLTNDTLDLNKTKDLYRDLLAV-FDKLILPTHASCHVQYCMFYICS---------FKLG 341
Query: 335 LADVFVSGLY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYC 386
+A+ F+ L+ PP+ R +A +Y+ SFL+RA+F+ + + L LV+W Y
Sbjct: 342 IAEAFLEHLWKKLQNPNNPPVIRQAAANYIGSFLARAKFIPLVTVKACLDLLVNWLHGY- 400
Query: 387 NILGGDINPKA------HRVFYSGCQAIMYVLCFRMRSIM--DIPRLKSQLLLMPLETVL 438
I D +A H FY+ QA+ Y FR + + ++ + + L + LE ++
Sbjct: 401 -IDNQDAGSRAYCDVTVHGPFYAASQAVFYSFIFRHKQFLEGNLRKGLTYLQNLNLERIV 459
Query: 439 KHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGG-------LER 491
LNPLK+CLPSVV+ F ++ +L N+ + R+ G
Sbjct: 460 MCQLNPLKICLPSVVNFFAAITRKYQLVFCYTIIERNNRQMIPIVRSSTGGDSVQVSFNP 519
Query: 492 LDMFFPFDPCLLKKSDR 508
LD FFPFDPC+LK+ +
Sbjct: 520 LDSFFPFDPCILKRCKK 536
>gi|346468377|gb|AEO34033.1| hypothetical protein [Amblyomma maculatum]
Length = 589
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 131/529 (24%), Positives = 219/529 (41%), Gaps = 79/529 (14%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRALLETSLKALSGAVSYIDISHHESLL 88
V+ A V + D+ NY QLV+V+ + D D+ AL+ LK + I+ H++ +L
Sbjct: 34 VQMAFKGVNTMDS-NYRQLVSVLKSA---DTDDDALVRL-LKRIKNCAPLIE-RHNDEVL 87
Query: 89 VSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHG 148
+ + + V+DA L + + ++ + L+ F P KE
Sbjct: 88 ECVLKIELLKRSIHVIDAFAQLACDMVYIHPVFLRNVFVTLLHTFMSPDAIS---KETPQ 144
Query: 149 LERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKL 208
E K L R+H K +F LVP AP L+ ++V P YM+
Sbjct: 145 REEK---LERLHELFKQLFKLVPTAPAHLVEVLVAVFP--------------YMKREGSQ 187
Query: 209 ESSAMGELVRST---------LLMAVVDRLIDLDMEIGWDDILH---------------D 244
++S +G L+R T LL + R + +D+ D+I+ D
Sbjct: 188 QASLVGHLLRMTSYIPDHRLELLQLLAHRALQIDLHCPKDEIMDAEDDAKEDDAMEEGGD 247
Query: 245 DFSKGIFEMELEDVEEA-ADDAEQVGDE----------LPSGSLSRKSLSGN--LIAELL 291
F F+ + + ++ A AD ++V +E + G LS+ L + L
Sbjct: 248 IFEMEKFKSDADRMQHALADILDKVLNEFYLYFQQHCNIRDGDLSKLDWEKTKVLFKDFL 307
Query: 292 DSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMS 351
+ + C ++F++FY C+ P + F L + + R +
Sbjct: 308 TIFDKIILPTHKCCH-----LQFLLFYLCSFRPAALAVAFLDYLWKKVQNPATSSVIRQA 362
Query: 352 AVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNIL--GGDINPK----AHRVFYSGC 405
+ Y+ SFL+RA+++ + + L + DW Y L GG P+ H FY+ C
Sbjct: 363 SAFYVGSFLARAKYVPLSTVCASLSLMCDWAHNYMASLNDGGFCQPQHDVQRHGTFYAVC 422
Query: 406 QAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARL 465
Q + YV F + I + L + LE ++ LNPLK CLP+VV +F ++ +L
Sbjct: 423 QTVFYVFAFHHKGIASGDKGLQYLRDLNLEGLVMCPLNPLKSCLPAVVKQFASIARHYQL 482
Query: 466 FTVSETFVFNDLLESELSRA-----FGGLERLDMFFPFDPCLLKKSDRF 509
N L + GG LD FFPFDP LLK++ ++
Sbjct: 483 VYCYSVIERNQRLALPTASCDDDGVHGGDIVLDAFFPFDPYLLKRTGKW 531
>gi|427789121|gb|JAA60012.1| Putative rna polymerase i specific transcription initiation factor
rrn3 [Rhipicephalus pulchellus]
Length = 595
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 126/517 (24%), Positives = 219/517 (42%), Gaps = 85/517 (16%)
Query: 43 NYNQLVAVMHLSGRLDPDNRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPD 102
NY QL++V+ + D D+ AL+ LK + + I+ H++ +L + +++ +
Sbjct: 51 NYRQLISVLKAA---DVDDEALVRL-LKRIKNSAPLIE-RHNDEVLDCVLKINLLKRNVR 105
Query: 103 VMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAA 162
V++A L + + ++ S + L++ F P E + + L R+HA
Sbjct: 106 VIEAFSQLACDMVFIHPAFLRSIVVSLLNTFMSPEATSKDTPE------RDEKLERLHAL 159
Query: 163 LKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRST-- 220
+ +F LVP APTR + I+ + P YM+ ++S +G L+R
Sbjct: 160 FRLLFKLVPTAPTRFVEILAEVFP--------------YMKRDGVQQASLVGHLLRMASY 205
Query: 221 -------LLMAVVDRLIDLDMEIGWDDIL------HDDFSKG--IFEMEL---EDVEEA- 261
LL + + + +D+ D+I DD +G IFEME D E
Sbjct: 206 IPDHRLQLLQLLTHKALQIDLHCPKDEINDAELEDEDDAMEGDDIFEMEKVSGADSERMQ 265
Query: 262 ---ADDAEQV----------------GDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHL 302
AD +QV G+++ + + + + D +++ T +
Sbjct: 266 HPLADTLDQVLNQFYLHFQRHCNVKDGNDMTKLNWEKTKVLFRDFLTIFDKIVLPTHK-- 323
Query: 303 ESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSR 362
C ++F++FY C+ P + F L + + R ++ Y+ SFL+R
Sbjct: 324 -CCH-----VQFLLFYLCSFRPAALAVAFLDYLWKKVQNPATSCIVRQASAFYIGSFLAR 377
Query: 363 ARFLSPCFIVSLLKRLVDWCLEYCNIL--GGDINPK----AHRVFYSGCQAIMYVLCFRM 416
A+++ + L + W Y L GG P+ H FY+ CQ + YV F
Sbjct: 378 AKYVPLSTVCDSLSLMCQWAHGYVASLNDGGFCQPQHDVQRHGTFYAVCQTVFYVFAFHH 437
Query: 417 RSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFND 476
+ I D + L + LE ++ LNPLK CLP+VV +F ++ +L N
Sbjct: 438 KGIADGAKGLQYLRELNLEALVMCPLNPLKACLPAVVKQFASIARHYQLVYCYSVIERNQ 497
Query: 477 LLESELSRAFG----GLERLDMFFPFDPCLLKKSDRF 509
L L G G LD FFPFDP +LK++ ++
Sbjct: 498 RL--ALPTTGGDTPYGDAVLDAFFPFDPYVLKRTGKW 532
>gi|427789119|gb|JAA60011.1| Putative rna polymerase i specific transcription initiation factor
rrn3 [Rhipicephalus pulchellus]
Length = 595
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 126/517 (24%), Positives = 219/517 (42%), Gaps = 85/517 (16%)
Query: 43 NYNQLVAVMHLSGRLDPDNRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPD 102
NY QL++V+ + D D+ AL+ LK + + I+ H++ +L + +++ +
Sbjct: 51 NYRQLISVLKAA---DVDDEALVRL-LKRIKNSAPLIE-RHNDEVLDCVLKINLLKRNIR 105
Query: 103 VMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAA 162
V++A L + + ++ S + L++ F P E + + L R+HA
Sbjct: 106 VIEAFSQLACDMVFIHPAFLRSIVVSLLNTFMSPEATSKDTPE------RDEKLERLHAL 159
Query: 163 LKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRST-- 220
+ +F LVP APTR + I+ + P YM+ ++S +G L+R
Sbjct: 160 FRLLFKLVPTAPTRFVEILAEVFP--------------YMKRDGVQQASLVGHLLRMASY 205
Query: 221 -------LLMAVVDRLIDLDMEIGWDDIL------HDDFSKG--IFEMEL---EDVEEA- 261
LL + + + +D+ D+I DD +G IFEME D E
Sbjct: 206 IPDHRLQLLQLLTHKALQIDLHCPKDEINDAELEDEDDAMEGDDIFEMEKVSGADSERMQ 265
Query: 262 ---ADDAEQV----------------GDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHL 302
AD +QV G+++ + + + + D +++ T +
Sbjct: 266 HPLADTLDQVLNQFYLHFQRHCNVKDGNDMTKLNWEKTKVLFRDFLTIFDKIVLPTHK-- 323
Query: 303 ESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSR 362
C ++F++FY C+ P + F L + + R ++ Y+ SFL+R
Sbjct: 324 -CCH-----VQFLLFYLCSFRPAALAVAFLDYLWKKVQNPATSCIVRQASAFYIGSFLAR 377
Query: 363 ARFLSPCFIVSLLKRLVDWCLEYCNIL--GGDINPK----AHRVFYSGCQAIMYVLCFRM 416
A+++ + L + W Y L GG P+ H FY+ CQ + YV F
Sbjct: 378 AKYVPLSTVCDSLSLMCQWAHGYVASLNDGGFCQPQHDVQRHGTFYAVCQTVFYVFAFHH 437
Query: 417 RSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFND 476
+ I D + L + LE ++ LNPLK CLP+VV +F ++ +L N
Sbjct: 438 KGIADGAKGLQYLRELNLEALVMCPLNPLKACLPAVVKQFASIARHYQLVYCYSVIERNQ 497
Query: 477 LLESELSRAFG----GLERLDMFFPFDPCLLKKSDRF 509
L L G G LD FFPFDP +LK++ ++
Sbjct: 498 RL--ALPTTGGDTPYGDAVLDAFFPFDPYVLKRTGKW 532
>gi|363739456|ref|XP_003642175.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 isoform 2 [Gallus gallus]
gi|53131744|emb|CAG31843.1| hypothetical protein RCJMB04_12c14 [Gallus gallus]
Length = 568
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 117/474 (24%), Positives = 211/474 (44%), Gaps = 68/474 (14%)
Query: 58 DPDNR-ALLETSLKALSGAVSYIDISHHESLLVSIFGMSMW-NYDPDVMDALKGLIISLA 115
DPD + A + L +V+Y+ + LVSI W +V++ G + +L
Sbjct: 46 DPDIKDAQIINWLHEFRSSVAYLTKDFEQ--LVSILLKLPWLRRSREVVEEYLGFLGNLV 103
Query: 116 ASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERK-----HQVLSRVHAALKSIFDLV 170
++ ++ CL+M+VS F PP + + + H AL+++ V
Sbjct: 104 SAQTVHLRPCLSMIVSQFVPPRIIIREDDVDISDSDDDEENLSENFDTCHRALQTVAKYV 163
Query: 171 PLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLI 230
P L+PI+V++ P + NK ER + Y+ N L++ + +R +L +V++L+
Sbjct: 164 PSTLQFLMPILVEKFPFI-NKSER--TLECYVHNLLRV--TVYLPTLRLQILELIVEKLL 218
Query: 231 DLDMEIGWDDILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAEL 290
LD+ DI + + + E + EE D E+ + + + +AE
Sbjct: 219 KLDVSTPQQDIEDAEEAANNSDSEEKSTEEGLFDMEEDEERKENKVSPSSERMAHPLAER 278
Query: 291 LDSLMVLTFEHLES-CEGTGRL----------------------------IEFVMFYACA 321
LD LM + F +++ C G+L +++ +F+ C+
Sbjct: 279 LDILMTILFAYIKDVCHVDGKLDINKTKDLYRDLVSVFDKLILPTHASCHVQYFIFHICS 338
Query: 322 LDPENCGLRFATMLADVFVSGLY--------PPLTRMSAVSYLASFLSRARFLSPCFIVS 373
L + LA+ F+ L+ P + R +A SY+ SFL+RA+F+ + +
Sbjct: 339 L---------KSGLAEAFLDHLWKKLQDPNNPSVIRQTAGSYIGSFLARAKFIPVVTVKA 389
Query: 374 LLKRLVDWCLEYCNILGGDINPKA----HRVFYSGCQAIMYVLCFRMRSIMD--IPRLKS 427
L LV+W +Y + N H FYS CQA Y L FR + ++D + + S
Sbjct: 390 CLDLLVNWMHKYIDNQDTGANAYCDVALHGPFYSACQAAFYTLIFRHKQLLDGNLRKGLS 449
Query: 428 QLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESE 481
L + E ++ LNPLK+C+PSVV+ F +++ + T+ + F + L +E
Sbjct: 450 YLQSLNFERIVMCQLNPLKICIPSVVNLFAAITRSKK--TIDPFYQFWEELSAE 501
>gi|339248087|ref|XP_003375677.1| putative glutaredoxin-like protein [Trichinella spiralis]
gi|316970937|gb|EFV54790.1| putative glutaredoxin-like protein [Trichinella spiralis]
Length = 781
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 130/527 (24%), Positives = 240/527 (45%), Gaps = 44/527 (8%)
Query: 2 GVELPIDHAESHEME-DVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPD 60
G+++ ES+++E + + + V V+ AL G++ NY ++++++ + +
Sbjct: 213 GLDVVKQMMESNQLEKNAVVPQMTSVLDVKSALQEFLEGNSMNYCSILSILNEAQPEFIE 272
Query: 61 NRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGK 120
L L L VS + + L + +S ++ ++I L ++
Sbjct: 273 QEKELSRVLMGLKLCVSMLVNRSLQKLNLDWMKLSR-----KLIRTHVDILIQLTLADVS 327
Query: 121 YVDSCLTMLVSNFTP----PSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTR 176
VD+ L V P P+ ++ + ++R+ + + H ALK +F++ P+ R
Sbjct: 328 CVDNVLMCFVKKLKPGTISPTCTVEDDDNENAIKRR-IIYTEAHRALKKLFEIYPVCVNR 386
Query: 177 LLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEI 236
+ V P H +H + + Y N L + + L R+ L + + E+
Sbjct: 387 IFTSFVNAYP-YHGQHTVI--LRDYARNLLH-STQYLPHLERNILGLII--------EEM 434
Query: 237 GWDDILHD------DFSKGIFEMELEDVEEAADD---AEQVGDELPSG-SLSRKSLSGNL 286
+D++HD ++GIFEM+L+ E A++ A Q+ ++L S ++L+ N
Sbjct: 435 TKNDVMHDMSNRSVSSAEGIFEMKLDKSETASNKQSGAHQLLNKLDICLSDLLRNLNENR 494
Query: 287 IAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPP 346
EL +SL+ + + + +++F+ FY C+L + +F +L + VS
Sbjct: 495 TDELFESLISVFIRSVLPLRSSS-VVQFIWFYMCSLRKKY-YRQFVKLLWECTVSASVSS 552
Query: 347 LTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEY-CNILGGDIN---PKAHRVFY 402
R++A SYLASF++RA F+ I+ L W +Y C D+N P+ H FY
Sbjct: 553 PLRLNAASYLASFIARANFIPIEEIMKYLLSWTQWIQQYICE--QDDVNRSHPQLHCSFY 610
Query: 403 SGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKA 462
CQA+ Y+ FR R ++++ L+ + L ++ +LNPL+ C +V F S+
Sbjct: 611 CICQAVFYIFSFRCRELINLTNGYDNLVRLNLHRIVTCELNPLQYCSNHLVRNFANVSRN 670
Query: 463 ARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
+L T ND L+ A L FFPFDP L++S F
Sbjct: 671 YQLAFCYVTLERNDRLKQLRLVAEWNLGN---FFPFDPQPLRRSFTF 714
>gi|428178330|gb|EKX47206.1| hypothetical protein GUITHDRAFT_107116 [Guillardia theta CCMP2712]
Length = 591
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 135/522 (25%), Positives = 225/522 (43%), Gaps = 75/522 (14%)
Query: 24 ELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRALLETSLKALSGAVSYIDISH 83
EL ++ AL G++ Y +++ V + D A+L L L S + H
Sbjct: 17 ELQQYIVGALHKKAQGNSTAYGEMIEV--IDAERDDAELAVL---LTCLIRCTSCLQRKH 71
Query: 84 HESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVS-----NFTPPSY 138
H SL+ SIF S W + + L+ L ++ ++N + L LV N P
Sbjct: 72 HSSLIHSIFAHS-WRTNRALTPHLEALAVNSVSANADLLSLILFELVKQLTLFNLNPTGN 130
Query: 139 FLDKLKEPHGLERKH--------QVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHN 190
+ G E +H Q VH ++ + + P L ++V P H+
Sbjct: 131 DASSAIDSAGKEAEHPSSDAADVQKAKDVHTVVRRVLETFPTGIMCYLDLLVNSFP--HH 188
Query: 191 KHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDIL--HD-DFS 247
+ + L +V ++ N L + + + +L + +L VVDRLI LD+EI + I HD + +
Sbjct: 189 RKD-LSELVCFLGNMLHV-TEYLPQL-QDGILNHVVDRLIRLDVEIDPEAISVGHDANST 245
Query: 248 KGIFEMELED--VEEAADDAEQVGDELPSGSLSRKSLSGNL--------------IAELL 291
+G+F+++++D E +++ + V +L + NL + +
Sbjct: 246 EGLFDIDIDDSSTSERSENMKAVEKLDAMMTLMFRFFHKNLGKRAGHDRDQVFSVLLRIF 305
Query: 292 DSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMS 351
DS ++ TF + ++F+ FY+C E F L V P R +
Sbjct: 306 DSRVLTTFR--------SKYVQFLCFYSCHFR-ERYSREFLQYLMTKVVERSNPDNERHA 356
Query: 352 AVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDI---NPKAHRVFYSGCQAI 408
A SYL SFL+RARF+ + L L W LEY + + + +P H +FY QA+
Sbjct: 357 AGSYLGSFLARARFVKLPMVQKSLSLLTKWILEYIDEVSPTVHEPDPYQHSLFYGLVQAL 416
Query: 409 MYVLCFRMRSIMDIPRLKSQLLL--MPLETVLKHDLNPLKVCLPSVVSEF---------L 457
+YVLCFR+ ++ R L + L+ + + LNPLKV +V +F L
Sbjct: 417 LYVLCFRVPQLVADERNYDTFLRFELQLDVITRCSLNPLKVINQNVSKQFVRICVKYKLL 476
Query: 458 QQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFD 499
Q L +++ V N +LE E+ FFPFD
Sbjct: 477 QAEMLRNLLAYNQSIVVNGVLE---------FEQEHSFFPFD 509
>gi|194380512|dbj|BAG58409.1| unnamed protein product [Homo sapiens]
Length = 502
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 113/413 (27%), Positives = 177/413 (42%), Gaps = 89/413 (21%)
Query: 160 HAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRS 219
H AL+ I VP P L+PI+V++ P V L+ Y+ N L++ S +R
Sbjct: 38 HRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLE---CYVHNLLRI--SVYFPTLRH 92
Query: 220 TLLMAVVDRLIDLDM-----------EIGWDDILHDDFSKGIFEMELEDVEEAADDAEQV 268
+L +V++L+ LD+ E D ++G+F M+ ++ E A
Sbjct: 93 EILELIVEKLLKLDVNASRQGIEDAEETATQTCGGTDSTEGLFNMDEDEETEHETKA--- 149
Query: 269 GDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLES-CEGTGRL---------------- 311
G E R + +AE LD LM L +++ C G++
Sbjct: 150 GPE-------RLDQMVHPVAERLDILMSLVLSYMKDVCYVDGKVDNGKTKDLYRDLINIF 202
Query: 312 ------------IEFVMFYACALDPENCGLRFATMLADVFVSGLY--------PPLTRMS 351
++F MFY C+ F A+ F+ L+ P + R +
Sbjct: 203 DKLLLPTHASCHVQFFMFYLCS---------FKLGFAEAFLEHLWKKLQDPSNPAIIRQA 253
Query: 352 AVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA------HRVFYSGC 405
A +Y+ SFL+RA+F+ + S L LV+W Y N D KA H FYS C
Sbjct: 254 AGNYIGSFLARAKFIPLITVKSCLDLLVNWLHIYLN--NQDSGTKAFCDVALHGPFYSAC 311
Query: 406 QAIMYVLCFRMRSIM--DIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAA 463
QA+ Y FR + ++ ++ L + E ++ LNPLK+CLPSVV+ F +
Sbjct: 312 QAVFYTFVFRHKQLLSGNLKEGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKY 371
Query: 464 RLFTVSETFVFNDLLESELSRAFGGLER-------LDMFFPFDPCLLKKSDRF 509
+L N+ + R+ G + LD FFPFDPC+LK+S +F
Sbjct: 372 QLVFCYTIIERNNRQMLPVIRSTAGGDSVQICTNPLDTFFPFDPCVLKRSKKF 424
>gi|119189373|ref|XP_001245293.1| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Coccidioides immitis RS]
Length = 697
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 137/563 (24%), Positives = 232/563 (41%), Gaps = 116/563 (20%)
Query: 39 GDNDNYNQLVAVMHLSGR-LDPDNRALLE----TSLK----ALSGAVSYIDISHHESLLV 89
GD+D Y+++ + + + L+ D + + TSLK L VS +D + L+
Sbjct: 115 GDSDAYDRVKEIFSVDPKALEDDGSPVYDLPTHTSLKNHLLGLLSNVSALD-NACSGLVH 173
Query: 90 SIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGL 149
++ G D + + +LAA+ G Y+ + L MLV+N + +L + +
Sbjct: 174 AVLGSEWLGRDEAYVKLFVRFLGTLAAARGGYLTAVLRMLVNNLREVPFGTGRLPG-YAV 232
Query: 150 ERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLE 209
R ++ RVH ++ I L+P L PI+ P + + K +V+ N +K+
Sbjct: 233 VRNAEIYDRVHFGIQHIIQLIPAGSVTLSPILSSSFP---HDTDTAKAHIVFTRNLIKMI 289
Query: 210 SSAMGELVRSTLLMAVVDRLIDLDMEIGWDDI---------LHDDFSKGIFEMELED--V 258
A +RS +L + ++L+ +D++I D LH++ + F +E +D V
Sbjct: 290 DYA--PELRSDILALITEKLVKIDVQIQVDLDDFEDEDEEKLHNEITAEAFALEDDDSDV 347
Query: 259 EEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTG--------- 309
E D E E + K+L N+ +D ++ L FE+ G
Sbjct: 348 ESIISDEESTSAE----TQRFKALKENI--NKIDYMLDLLFEYYSGPFNYGTLDDKENNL 401
Query: 310 -----------------RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSA 352
R +F++F+ P RFA + +S +P + R A
Sbjct: 402 DLLLAHFQNIILPTYRSRHSQFLLFHYSQSSPILVD-RFAAACIQIILSKSHPSVLRQYA 460
Query: 353 VSYLASFLSRARFLSPCFIVS----LLKRLVDWCLEY-CNILGGDINPKAHRVFYSGCQA 407
+YLASF++R ++ + L L + EY N G D+ + + FY+ QA
Sbjct: 461 AAYLASFVARGAHVTSEVVRDVFDLLCTHLKNLITEYEPNCRGPDL--RRYATFYATAQA 518
Query: 408 IMYVLCFRMRSIMDIPRLKS----------QLLLMP-----LETVLKHDLNPLKVCLPSV 452
I+Y+ CFR R + + Q+ P L T + LNPLK+C PS+
Sbjct: 519 ILYIFCFRWRDLTTAAQEGDIDIHVELDLDQVRFPPNISDVLHTAIHSKLNPLKICSPSI 578
Query: 453 VSEF---------------LQQSKAARLFTVSETFVFNDLLESELSRAFGGLER------ 491
V EF L+ +K R+FT + + FG +ER
Sbjct: 579 VREFARIAHHVGFMYVFPLLETNKRIRIFTFRSSM--------SMDSRFGQIERETRADN 630
Query: 492 -----LDMFFPFDPCLLKKSDRF 509
LD +FPFDP L +S R+
Sbjct: 631 DLGPQLDAYFPFDPYNLPRSRRW 653
>gi|392868193|gb|EAS33941.2| hypothetical protein CIMG_04734 [Coccidioides immitis RS]
Length = 706
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 137/563 (24%), Positives = 232/563 (41%), Gaps = 116/563 (20%)
Query: 39 GDNDNYNQLVAVMHLSGR-LDPDNRALLE----TSLK----ALSGAVSYIDISHHESLLV 89
GD+D Y+++ + + + L+ D + + TSLK L VS +D + L+
Sbjct: 124 GDSDAYDRVKEIFSVDPKALEDDGSPVYDLPTHTSLKNHLLGLLSNVSALD-NACSGLVH 182
Query: 90 SIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGL 149
++ G D + + +LAA+ G Y+ + L MLV+N + +L + +
Sbjct: 183 AVLGSEWLGRDEAYVKLFVRFLGTLAAARGGYLTAVLRMLVNNLREVPFGTGRLPG-YAV 241
Query: 150 ERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLE 209
R ++ RVH ++ I L+P L PI+ P + + K +V+ N +K+
Sbjct: 242 VRNAEIYDRVHFGIQHIIQLIPAGSVTLSPILSSSFP---HDTDTAKAHIVFTRNLIKMI 298
Query: 210 SSAMGELVRSTLLMAVVDRLIDLDMEIGWDDI---------LHDDFSKGIFEMELED--V 258
A +RS +L + ++L+ +D++I D LH++ + F +E +D V
Sbjct: 299 DYA--PELRSDILALITEKLVKIDVQIQVDLDDFEDEDEEKLHNEITAEAFALEDDDSDV 356
Query: 259 EEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTG--------- 309
E D E E + K+L N+ +D ++ L FE+ G
Sbjct: 357 ESIISDEESTSAE----TQRFKALKENI--NKIDYMLDLLFEYYSGPFNYGTLDDKENNL 410
Query: 310 -----------------RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSA 352
R +F++F+ P RFA + +S +P + R A
Sbjct: 411 DLLLAHFQNIILPTYRSRHSQFLLFHYSQSSPILVD-RFAAACIQIILSKSHPSVLRQYA 469
Query: 353 VSYLASFLSRARFLSPCFIVS----LLKRLVDWCLEY-CNILGGDINPKAHRVFYSGCQA 407
+YLASF++R ++ + L L + EY N G D+ + + FY+ QA
Sbjct: 470 AAYLASFVARGAHVTSEVVRDVFDLLCTHLKNLITEYEPNCRGPDL--RRYATFYATAQA 527
Query: 408 IMYVLCFRMRSIMDIPRLKS----------QLLLMP-----LETVLKHDLNPLKVCLPSV 452
I+Y+ CFR R + + Q+ P L T + LNPLK+C PS+
Sbjct: 528 ILYIFCFRWRDLTTAAQEGDIDIHVELDLDQVRFPPNISDVLHTAIHSKLNPLKICSPSI 587
Query: 453 VSEF---------------LQQSKAARLFTVSETFVFNDLLESELSRAFGGLER------ 491
V EF L+ +K R+FT + + FG +ER
Sbjct: 588 VREFARIAHHVGFMYVFPLLETNKRIRIFTFRSSM--------SMDSRFGQIERETRADN 639
Query: 492 -----LDMFFPFDPCLLKKSDRF 509
LD +FPFDP L +S R+
Sbjct: 640 DLGPQLDAYFPFDPYNLPRSRRW 662
>gi|355756575|gb|EHH60183.1| hypothetical protein EGM_11500, partial [Macaca fascicularis]
Length = 517
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 122/491 (24%), Positives = 203/491 (41%), Gaps = 96/491 (19%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRA-LLETSLKALSGAVSYIDISHHESL 87
V E L + G+ +++ L + LDPD + + L ++ Y+ E L
Sbjct: 56 VTEVLLKYKKGETNDFELLKNQL-----LDPDIKDDQIINWLLEFRSSIMYL-TKDFEQL 109
Query: 88 LVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPH 147
+ I + N V++ + +L ++ ++ CL+M+ S+F PP + +
Sbjct: 110 ISIILRLPWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGDVDV 169
Query: 148 GLERKHQV-----LSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYM 202
H AL+ I VP P L+PI+V++ P V L+ Y+
Sbjct: 170 SDSEDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVQKSERTLE---CYV 226
Query: 203 ENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILH-----------DDFSKGIF 251
N L++ S +R +L ++++L+ LD+ DI D ++G+F
Sbjct: 227 HNLLRI--SVYFPTLRHEILELIIEKLLKLDVNASRQDIEDAEETATQTCGGTDSTEGLF 284
Query: 252 EMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLES-CEGTGR 310
M D+ E+ + +G +R + +AE LD LM L +++ C G+
Sbjct: 285 NM---------DEDEETEHDTKAGP-ARLDQMVHPVAERLDILMSLVLSYMKDVCYVDGK 334
Query: 311 L----------------------------IEFVMFYACALDPENCGLRFATMLADVFVSG 342
+ ++F MFY C+ F A+ F+
Sbjct: 335 VDNSKTKDLYRDLINIFDKLLLPTHASCHVQFFMFYLCS---------FKLGFAEAFLEH 385
Query: 343 LY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDIN 394
L+ P + R +A +Y+ SFL+RA+F+ + S L LV+W Y N D
Sbjct: 386 LWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLLVNWLHIYLN--NQDSG 443
Query: 395 PKA------HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP---LETVLKHDLNPL 445
KA H FYS CQA+ Y FR + ++ LK L + E ++ LNPL
Sbjct: 444 TKAFCDVALHGPFYSACQAVFYTFVFRHKQLLS-GNLKEGLRYLQSLNFERIVMSQLNPL 502
Query: 446 KVCLPSVVSEF 456
KVCLPSVV+ F
Sbjct: 503 KVCLPSVVNFF 513
>gi|292611905|ref|XP_706962.2| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 isoform 2 [Danio rerio]
Length = 612
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 137/552 (24%), Positives = 227/552 (41%), Gaps = 110/552 (19%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNR-ALLETSLKALSGAVSYIDISHHESL 87
V L +Q GD +Y + + DPD + A + L+ V+ + HE L
Sbjct: 23 VANTLAKLQKGDTSDYELIKHQLS-----DPDIKDAQIINWLQEFRTCVTQLG-KDHEQL 76
Query: 88 LVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDK----- 142
+ + + V++ + +L ++ Y+ +CL M+V+NF+P + +
Sbjct: 77 VYVVLKLPWLGRSQAVVEEYLAFLSNLVSAQTVYLRACLRMVVTNFSPKRIRIQEGNVDI 136
Query: 143 LKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYM 202
E + H AL+ I VP L+PI+ + P V L+ Y+
Sbjct: 137 SDSDDEDENLPRTFDNCHQALQLIARYVPSTSRFLMPILTDKFPFVQKSSRTLE---CYV 193
Query: 203 ENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAA 262
N L++ + +R +L ++ +++ LD+ E+E+VE A
Sbjct: 194 HNLLRV--TVYIPDLRKDVLELIISKMLMLDVSAP--------------RSEIEEVESGA 237
Query: 263 ---------DDAEQVGDELPSGSLSRKSLSGNLI---AELLDSLMVLTFEHLESC----- 305
DD DE LS + G ++ AE LD++M + +++
Sbjct: 238 QQGASGASQDDCLFNMDEEEDSPLSSGADGGAMVHPVAERLDTMMTVLLAYIKDVSHVNG 297
Query: 306 ----EGTGRL--------------------IEFVMFYACALDPENCGLRFATMLADVFVS 341
E T L ++F MFY C+ F LA+ F+
Sbjct: 298 TLDIEKTKALYRDLVSVFDKVVLPTHASCHVQFYMFYLCS---------FRLGLAEAFLD 348
Query: 342 GLY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDI 393
L+ P + R SA Y+ SF++RA+FL + + L LV W Y I D
Sbjct: 349 HLWKLLQGPNQPSVLRQSAAGYMGSFMARAKFLPVSTVKACLDLLVPWLHLY--IDSQDS 406
Query: 394 NPKA------HRVFYSGCQAIMYVLCFRMRSIM--DIPRLKSQLLLMPLETVLKHDLNPL 445
KA H FY+ CQA+ Y L F+ +I+ ++ + + L + LE ++ LNPL
Sbjct: 407 GSKAFCDINLHGPFYTACQAVFYTLIFKHNAILEGNMKKGLAYLQGLNLERIVMCQLNPL 466
Query: 446 KVCLPSVVSEFLQQSKAARL---FTVSETFVFNDLLESELSRAFGG------LERLDMFF 496
+VCLP+V + F ++ +L +T+ E N L + + GG LD FF
Sbjct: 467 RVCLPAVTNMFAAITRKYQLVFCYTIIER--NNRHLLPVVRSSVGGSSVATNTNPLDSFF 524
Query: 497 PFDPCLLKKSDR 508
PFDP LLK S +
Sbjct: 525 PFDPYLLKSSGK 536
>gi|440792455|gb|ELR13676.1| RNA polymerase I specific transcription initiation factor RRN3
protein [Acanthamoeba castellanii str. Neff]
Length = 569
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 113/485 (23%), Positives = 202/485 (41%), Gaps = 108/485 (22%)
Query: 69 LKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTM 128
L+AL+ + S I + E+LL + W D +++ A L+++L +S+ ++
Sbjct: 22 LQALTQSASLIKTPNCEALLNVLHAFD-WAADKEIVSAYANLLLNLISSDVCHLAPTFQS 80
Query: 129 LVSNF--------------------------TPPSYFLDKLK--------EPHGLERKHQ 154
+ NF +P F+ +L E + L Q
Sbjct: 81 IARNFLPRRSHNSLAMAQPNLRTTTTHHFARSPIHVFVRRLGNTNASKQGEKYDLLATEQ 140
Query: 155 VLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIV--VYMENTLKLESSA 212
+ +H + I DLVP + + LL I+ P H+RL + Y+ N L++ S
Sbjct: 141 IAKHLHQTIALILDLVPSSTSVLLDILEHNFP-----HKRLDVETHRCYLSNILQVASYC 195
Query: 213 MGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAADDAEQVGDEL 272
E ++S++L + ++ +DM
Sbjct: 196 --EALKSSILALAIKNILQIDMFF------------------------------------ 217
Query: 273 PSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFA 332
++ +L D+ ++ T + + ++F++FY CA+D N F
Sbjct: 218 -------------MLMQLFDTFILKTHK--------SKYVQFLLFYVCAMD-INYTHAFV 255
Query: 333 TMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGD 392
L + + PLTR + +YL SFL+R+ + + L+ + W L+Y D
Sbjct: 256 RYLLEKVMDVSNHPLTRSTCAAYLGSFLARSTLVPTQLVQEPLQIMSRWALQY-GTQNRD 314
Query: 393 INPKA--HRVFYSGCQAIMYVLCFRMRSI-MDIPRLKSQLLLMPLETVLKHDLNPLKVCL 449
P A H +FYS CQA+ YV+CF+ + + + P + L + L+ +++ LNPL++C
Sbjct: 315 TMPDAEVHGLFYSVCQAVFYVVCFKYQQLALRTPEGAAFLDSLELDAIIQSRLNPLRLCA 374
Query: 450 PSVVSEFLQQSK--AARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSD 507
+VV+EFL+ + L + N + FG +LD FFPFDP LL+ S
Sbjct: 375 STVVTEFLKVAADLCGLLPSARAVLERNKRVVLATKSVFGNANQLDSFFPFDPYLLRHSS 434
Query: 508 RFANA 512
+ +A
Sbjct: 435 KHISA 439
>gi|320033389|gb|EFW15337.1| RNA polymerase I specific transcription initiation factor RRN3
[Coccidioides posadasii str. Silveira]
Length = 706
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 120/480 (25%), Positives = 198/480 (41%), Gaps = 106/480 (22%)
Query: 113 SLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPL 172
+LAA+ G Y+ + L MLV+N + +L + + R ++ RVH ++ I L+P
Sbjct: 206 TLAAARGGYLTAVLRMLVNNLREVPFGTGRLPG-YAVVRNAEIYDRVHFGIQHIIQLIPA 264
Query: 173 APTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDL 232
L PI+ P + + K +V+ N +K+ A +RS +L + ++L+ +
Sbjct: 265 GSVTLSPILSSGFP---HDTDTAKAHIVFTRNLIKMIDYA--PELRSDILALITEKLVKI 319
Query: 233 DMEIGWDDI---------LHDDFSKGIFEMELE--DVEEAADDAEQVGDELPSGSLSRKS 281
D++I D LH++ + F +E + DVE D E E + K+
Sbjct: 320 DVQIQVDLDDFEDEDEEKLHNEITAEAFVLEDDNSDVESTISDEESTSAE----TQRFKA 375
Query: 282 LSGNLIAELLDSLMVLTFEHLESCEGTG--------------------------RLIEFV 315
L N+ +D ++ L FE+ G R +F+
Sbjct: 376 LKENI--NKIDYMLDLLFEYYSGPFNYGTLDDKENNLDLLLAHFQNIILPTYRSRHSQFL 433
Query: 316 MFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVS-- 373
+F+ P RFA + +S +P + R A +YLASF++R ++ +
Sbjct: 434 LFHYSQSSPILVD-RFAAACIQIILSKSHPSVLRQYAAAYLASFVARGAHVTSEVVRDVF 492
Query: 374 --LLKRLVDWCLEY-CNILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKS--- 427
L L + EY N G D+ + + FY+ QAI+Y+ CFR R + +
Sbjct: 493 DLLCTHLKNLITEYESNCRGPDL--RRYATFYATAQAILYIFCFRWRDLTTAAQEGDIDI 550
Query: 428 -------QLLLMP-----LETVLKHDLNPLKVCLPSVVSEF---------------LQQS 460
Q+ P L T + LNPLK+C PS+V EF L+ +
Sbjct: 551 HVELDLDQVRFPPNISDVLHTAIHSKLNPLKICSPSIVREFARIAHHVGFMYVFPLLETN 610
Query: 461 KAARLFTVSETFVFNDLLESELSRAFGGLER-----------LDMFFPFDPCLLKKSDRF 509
K R+FT + + FG +ER LD +FPFDP L +S R+
Sbjct: 611 KRIRIFTFRSSM--------SMDSRFGQIERETRADNDLGPQLDAYFPFDPYNLPRSRRW 662
>gi|303323137|ref|XP_003071560.1| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Coccidioides posadasii C735 delta SOWgp]
gi|240111262|gb|EER29415.1| RNA polymerase I specific transcription initiation factor RRN3
family protein [Coccidioides posadasii C735 delta SOWgp]
Length = 697
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 137/563 (24%), Positives = 231/563 (41%), Gaps = 116/563 (20%)
Query: 39 GDNDNYNQLVAVMHLSGR-LDPDNRALLE----TSLK----ALSGAVSYIDISHHESLLV 89
GD+D Y+++ + + + L+ D + + TSLK L VS +D S L+
Sbjct: 115 GDSDAYDRVKEIFSVDPKALEVDGSPVYDLPTHTSLKNHLLGLLSNVSALD-SACSGLVH 173
Query: 90 SIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGL 149
++ D + + +LAA+ G Y+ + L MLV+N + +L + +
Sbjct: 174 AVLDSEWLGRDEAYVKLFVRFLGTLAAARGGYLTAVLRMLVNNLREVPFGTGRLPG-YAV 232
Query: 150 ERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLE 209
R ++ RVH ++ I L+P L PI+ P + + K +V+ N +K+
Sbjct: 233 VRNAEIYDRVHFGIQHIIQLIPAGSVTLSPILSSGFP---HDTDTAKAHIVFTRNLIKMI 289
Query: 210 SSAMGELVRSTLLMAVVDRLIDLDMEIGWDDI---------LHDDFSKGIFEMELE--DV 258
A +RS +L + ++L+ +D++I D LH++ + F +E + DV
Sbjct: 290 DYA--PELRSDILALITEKLVKIDVQIQVDLDDFEDEDEEKLHNEITAEAFVLEDDNSDV 347
Query: 259 EEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTG--------- 309
E D E E + K+L N+ +D ++ L FE+ G
Sbjct: 348 ESTISDEESTSAE----TQRFKALKENI--NKIDYMLDLLFEYYSGPFNYGTLDDKENNL 401
Query: 310 -----------------RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSA 352
R +F++F+ P RFA + +S +P + R A
Sbjct: 402 DLLLAHFQNIILPTYRSRHSQFLLFHYSQSSPILVD-RFAAACIQIILSKSHPSVLRQYA 460
Query: 353 VSYLASFLSRARFLSPCFIVS----LLKRLVDWCLEY-CNILGGDINPKAHRVFYSGCQA 407
+YLASF++R ++ + L L + EY N G D+ + + FY+ QA
Sbjct: 461 AAYLASFVARGAHVTSEVVRDVFDLLCTHLKNLITEYESNCRGPDL--RRYATFYATAQA 518
Query: 408 IMYVLCFRMRSIMDIPRLKS----------QLLLMP-----LETVLKHDLNPLKVCLPSV 452
I+Y+ CFR R + + Q+ P L T + LNPLK+C PS+
Sbjct: 519 ILYIFCFRWRDLTTAAQEGDIDIHVELDLDQVRFPPNISDVLHTAIHSKLNPLKICSPSI 578
Query: 453 VSEF---------------LQQSKAARLFTVSETFVFNDLLESELSRAFGGLER------ 491
V EF L+ +K R+FT + + FG +ER
Sbjct: 579 VREFARIAHHVGFMYVFPLLETNKRIRIFTFRSSM--------SMDSRFGQIERETRADN 630
Query: 492 -----LDMFFPFDPCLLKKSDRF 509
LD +FPFDP L +S R+
Sbjct: 631 DLGPQLDAYFPFDPYNLPRSRRW 653
>gi|119497257|ref|XP_001265389.1| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Neosartorya fischeri NRRL 181]
gi|119413551|gb|EAW23492.1| RNA polymerase I specific transcription initiation factor RRN3
superfamily [Neosartorya fischeri NRRL 181]
Length = 713
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 122/475 (25%), Positives = 197/475 (41%), Gaps = 92/475 (19%)
Query: 113 SLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPL 172
+LAA+ G Y+ + L ML +NF KL + + ++ SR H AL+ + L+P
Sbjct: 208 NLAAAQGSYLGAVLKMLANNFGEIPKGTGKLPG-YAPVQAAEIYSRTHMALRHVMQLIPS 266
Query: 173 APTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDL 232
L PI+ + P + K + Y N LK+ S A +++ +L + ++++ +
Sbjct: 267 GSGTLSPILSMQFPF---DTDSAKANIAYTRNLLKVISYA--PELQADILALITEKVVKI 321
Query: 233 DMEIGWD----------DILHDDFSKGIFEMELEDVEEAADDAEQVG--DELPSGSLSRK 280
D++I D D+LH + LED E DD V D L S K
Sbjct: 322 DVQIQVDMEDIEDEVGEDVLHAVSPEATM---LEDDENEVDDNASVASDDSLDVESRRVK 378
Query: 281 SLSGNLIAELLDSLMVLTFEHLESCEGTG--------------------------RLIEF 314
++ N++ LD ++ FE+ TG R +F
Sbjct: 379 TIKDNILK--LDGMIDSLFEYYAPPFATGTLDDKENALDLLLSHFQSIILPTYRSRHSQF 436
Query: 315 VMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSL 374
++F+ P RFA + + + P + R SA +YLASF++R +S + +
Sbjct: 437 LLFHFSQSSPILVD-RFAATCVQLIFNKMQPGILRQSAAAYLASFVARGAHISGEVVRDV 495
Query: 375 L----KRLVDWCLEY-CNILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIM------DIP 423
L + L+Y G D+ + + FYS QA++Y+ CFR R + D P
Sbjct: 496 FDLLGTHLNNLRLDYEATCRGPDL--RRYGPFYSTAQALLYIFCFRWRDLTTAAMEGDTP 553
Query: 424 R----LKSQLLLMP------LETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFV 473
L+ + + P L + LNPLKVC P++VSEF + ++ V
Sbjct: 554 EQIDELEPEEITFPPSVKEVLHQAVHSKLNPLKVCSPAIVSEFARMAQHLNFMYVFSILE 613
Query: 474 FNDLLESELSRA--------FGGLER-----------LDMFFPFDPCLLKKSDRF 509
N L R+ F +ER LD +FPFDP L +S R+
Sbjct: 614 TNKRLRVSSFRSISAMADPRFSHVERETRAGDDLGYQLDAYFPFDPYQLPRSRRW 668
>gi|328860339|gb|EGG09445.1| hypothetical protein MELLADRAFT_34470 [Melampsora larici-populina
98AG31]
Length = 511
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 128/503 (25%), Positives = 219/503 (43%), Gaps = 97/503 (19%)
Query: 65 LETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLII-SLAASNGKYVD 123
++ L L+ VS +D +H S+LV+ W D A+ + L ++ +++
Sbjct: 7 IQRWLTTLTSVVSKLDRTH--SVLVNKVLSLPWTVMDDQFVAVYSRFVHGLVSARSEWIH 64
Query: 124 SCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQ 183
+ +V Y L P + R+ + R+H+ L+SI LVP P+ L PI+
Sbjct: 65 LVVEKVVQGL---HYLL-----PKEITRR-LIYQRLHSLLRSILRLVPTLPSILWPILES 115
Query: 184 RMPTVHNKHERLKMIVVYMENTLKLESSA---MGELVRSTLLMAVVDRLIDLDMEIGWDD 240
P NK E Y N LK+ + M ++V+ T +DR + LD+EI +
Sbjct: 116 SYP---NKRENRDAHTCYTANLLKITTYCDELMEQIVKLT-----IDRCVKLDVEIQVEV 167
Query: 241 ILHDDFSKGIFE----------MELEDVEEAADDAEQVGDELPSGSLSRKSLSG-NLIAE 289
+D + E +EL+D+ ++DD + + P+ + S S+ +A
Sbjct: 168 EDWEDDDEPEPEDDAELDAGECLELDDL--SSDDGQSSDENEPTNAPSPASIRKVKELAA 225
Query: 290 LLDSLMVLTFEHL-----------------------ESC---EGTGRLIEFVMFYACALD 323
LD ++ +HL ESC R +FV+F+ ++
Sbjct: 226 KLDGILRCILDHLHAAPEPRFQAEKELFFDVLLSSFESCILRTQRTRHTQFVIFWYASVH 285
Query: 324 PENCGLRFATMLADVFVS---GLYPPLTRMSAVSYLASFLSRARFL---SPCFIVSLLKR 377
P+ AT++ + +P +TR++++ Y+AS +SRAR++ + +VSLL
Sbjct: 286 PDFADSLLATLVECALYAYDDSTHPIVTRVASLGYIASLVSRARYIDKQTTRHVVSLL-- 343
Query: 378 LVDWCLEYCNILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIM----------------- 420
C L G+ N ++ ++YS QA+ Y+ CFR + ++
Sbjct: 344 ----CARLEAGLVGEGNGNSYALWYSIAQAVFYIFCFRWKDLLVGEDEEIEDEDSLSPGK 399
Query: 421 DIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLES 480
+ R + L + LE + LNPLK C P+VVS+F + + ND S
Sbjct: 400 QVGRWLTGLKV--LERAVSSHLNPLKACAPTVVSQFAKVAHQTNFIYCYNILRSND--RS 455
Query: 481 ELSRAFGGLERLDMFFPFDPCLL 503
L+ + G R+D FFPFDPC L
Sbjct: 456 GLNSS--GKSRMDSFFPFDPCRL 476
>gi|212539664|ref|XP_002149987.1| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Talaromyces marneffei ATCC 18224]
gi|210067286|gb|EEA21378.1| RNA polymerase I specific transcription initiation factor RRN3
superfamily [Talaromyces marneffei ATCC 18224]
Length = 711
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 133/561 (23%), Positives = 239/561 (42%), Gaps = 91/561 (16%)
Query: 29 VREALTSVQSG-DNDNYNQLVAVMHLSGRLDPDNRAL---LETSLKA-LSGAVSYIDISH 83
+R A+ SG D++ Y+Q+ + + D + TS+K + G +S + +
Sbjct: 112 IRRAIQRHVSGVDSEGYDQIKEIFTTDPKETSDEESPDIPSPTSMKRHMMGLLSNVAALN 171
Query: 84 HE--SLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLD 141
+ L+ ++ G D + + +LAA++ Y+ L MLV+ F
Sbjct: 172 RDCSGLVHAVLGSEWVGRDESYVKLFVRFLGNLAATHTGYMRVVLKMLVTYFGEIPKGTG 231
Query: 142 KLKEPHGLERKHQ-VLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVV 200
+L P H+ + RVH AL+ I L+P + L P++ Q+ P + + V
Sbjct: 232 RL--PGYASVSHEDIYDRVHMALRYIMQLLPAGSSTLSPLLSQQFPF---DTDSARANVF 286
Query: 201 YMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWD-DILHDDFSKGI-------FE 252
Y N +K+ A +R +L + +RLI +D++I D + D+ + I FE
Sbjct: 287 YTRNLIKVIDYA--PELRGDILSLITERLIKIDVQIQVDMEDFEDEVGEDILEELARPFE 344
Query: 253 MELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLES--CEGT-- 308
+E D E++ D++ DE + + +++ N+ +DS++ FE+ + GT
Sbjct: 345 IEYIDEEDSDDESILSDDEADAEAKRLQTVKDNI--SKVDSMIDQLFEYYSTHFQHGTDA 402
Query: 309 ----------------------GRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPP 346
R +F++F+ P+ +F T ++ S P
Sbjct: 403 VKLQTLDLLIHHFVSYILPTYRSRHTQFLLFHFSQSTPDLVD-KFVTSCMEIINSKSRSP 461
Query: 347 LTRMSAVSYLASFLSRARFLSPCFIVSLL----KRLVDWCLEYCNILGGDINPKAHRVFY 402
+ R SA +YL SF++R + LS + + K L + Y G N + + FY
Sbjct: 462 IMRQSAAAYLGSFVARGKHLSSRAVRDIFEMLGKNLSNLLETYERNCHGP-NLRGYGPFY 520
Query: 403 SGCQAIMYVLCFRMRSIMDI-----------PRLKS----QLLLMPLETVLKHDLNPLKV 447
+ QA++Y+ CFR R + P L+ + + PL + LNPLK+
Sbjct: 521 ASMQALLYIFCFRWRDLTTTAEENDGIEDEDPDLEDVTFPEAVRDPLYRAIHSRLNPLKI 580
Query: 448 CLPSVVSEF---------------LQQSKAARLFTVSETFVFND----LLESELSRAFGG 488
C P++V+EF L+ +K R+ + +D ++E E G
Sbjct: 581 CSPAIVTEFARIAHHLGFMYIYTLLESNKRLRVSSFRSITTLSDPRFSIVERETRAGNDG 640
Query: 489 LERLDMFFPFDPCLLKKSDRF 509
+ LD +FPFDP L +S R+
Sbjct: 641 ADVLDAYFPFDPYQLPRSRRW 661
>gi|332240365|ref|XP_003269358.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 [Nomascus leucogenys]
Length = 519
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 124/483 (25%), Positives = 193/483 (39%), Gaps = 107/483 (22%)
Query: 85 ESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLK 144
E L+ I + N V++ + +L ++ ++ CL+M+ S+F PP + +
Sbjct: 8 EQLISIILRLPWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGD 67
Query: 145 EPHGLERKHQV-----LSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIV 199
H AL+ I VP P L+PI+V++ P V K ER
Sbjct: 68 VDVSDSDDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVR-KSER----- 121
Query: 200 VYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVE 259
TL+ A + D + E D ++G+F M+ ++
Sbjct: 122 --------------------TLVNASRQDIEDAE-ETATQTCGGTDSTEGLFNMDEDEET 160
Query: 260 EAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLES-CEGTGRL------- 311
E A G E R + +AE LD LM L +++ C G++
Sbjct: 161 ERETKA---GPE-------RLYQMVHPVAERLDILMSLVLSYMKDVCYVDGKVDNGKTKD 210
Query: 312 ---------------------IEFVMFYACALDPENCGLRFATMLADVFVSGLY------ 344
++F MFY C+ F A+ F+ L+
Sbjct: 211 LYRDLINIFDKLLLPTHASCHVQFFMFYLCS---------FKLGFAEAFLEHLWKKLQDP 261
Query: 345 --PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA----- 397
P + R +A +Y+ SFL+RA+F+ + S L LV+W Y N D KA
Sbjct: 262 SNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLLVNWLHIYLN--NQDSGTKAFCDVA 319
Query: 398 -HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP---LETVLKHDLNPLKVCLPSVV 453
H FYS CQA+ Y FR + ++ LK L + E ++ LNPLK+CLPSVV
Sbjct: 320 LHGPFYSACQAVFYTFVFRHKQLLS-GNLKEGLQYLQSLNFERIVMSQLNPLKICLPSVV 378
Query: 454 SEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER-------LDMFFPFDPCLLKKS 506
+ F + +L N+ + R+ G + LD FFPFDPC+LK+S
Sbjct: 379 NFFAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQTCTNPLDTFFPFDPCVLKRS 438
Query: 507 DRF 509
+F
Sbjct: 439 KKF 441
>gi|157131927|ref|XP_001655975.1| transcription initiation factor RRN3 [Aedes aegypti]
gi|108871354|gb|EAT35579.1| AAEL012265-PA [Aedes aegypti]
Length = 606
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 111/437 (25%), Positives = 191/437 (43%), Gaps = 61/437 (13%)
Query: 110 LIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGL--ERKHQVLSRVHAALKSIF 167
+I L ++ Y ++ LV F P ++ +G+ E +VLS +H ++ +
Sbjct: 118 FVIELLVAHSNYTSLAVSKLVQLFVPKDE--ERTGWIYGVPSEDVLKVLSPIHELIERLK 175
Query: 168 DLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKL-ESSAMGELVRSTLLMAVV 226
+++P+ +L + ++ P + +I Y+ N L + E S+M LL +
Sbjct: 176 NVIPMIFNVILVQLRKQFPYFKKP---MHVICGYLHNVLWMTEHSSM---FSEELLEIIF 229
Query: 227 DRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNL 286
+RL+ +D+ + E+ED E DD DE P+ + +
Sbjct: 230 NRLLTIDVNTPRN--------------EIEDAEFPDDDQIFSMDEDPAVIDEDDNDDIIM 275
Query: 287 ---IAELLDSLMVLTFEHLE---SCEGTG-----------------------RLIEFVMF 317
IAE LD M F+++E + E T ++F++F
Sbjct: 276 KLPIAETLDCCMQKMFKYIEQRATSENTSDADRMFKILLALFDKHILPTHNTHHVQFLVF 335
Query: 318 YACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKR 377
Y C+ + V + P+ R +AV Y+AS L+RA+++ + S L+
Sbjct: 336 YICSFKQSYVEYFITYLWKQVCNPNVSTPM-RQAAVGYIASMLARAKYVPLVLLKSTLQE 394
Query: 378 LVDWCLEYCNILGG---DINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPL 434
W Y + + + KAH VFYS CQAI YV+ FR + + + + L + L
Sbjct: 395 FSYWVHNYIQRMDSMHYNQSLKAHMVFYSVCQAIFYVVAFRSKHLTSNAKNLTFLQSLQL 454
Query: 435 ETVLKHDLNPLKVCLPSVVSEFLQQSKAARL---FTVSETFVFNDLLESELSRAFGGLER 491
+++ LNPL+VCLP+V + F ++A +L T+ E L + + E
Sbjct: 455 SSIVTCHLNPLRVCLPAVATAFAGVTRAHQLAYCHTILERNARRKLATVYKNESQTPEEC 514
Query: 492 LDMFFPFDPCLLKKSDR 508
LD FFPFDP +LKKS +
Sbjct: 515 LDTFFPFDPYMLKKSGK 531
>gi|70990320|ref|XP_750009.1| RNA polymerase I specific transcription initiation factor RRN3
superfamily [Aspergillus fumigatus Af293]
gi|66847641|gb|EAL87971.1| RNA polymerase I specific transcription initiation factor RRN3
superfamily [Aspergillus fumigatus Af293]
Length = 713
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 122/475 (25%), Positives = 197/475 (41%), Gaps = 92/475 (19%)
Query: 113 SLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPL 172
+LAA+ G Y+ + L ML +NF KL + + ++ SR H AL+ + L+P
Sbjct: 208 NLAAAQGSYLGAVLKMLANNFGEIPKGTGKLPG-YAPVQAAEIYSRTHMALRHVMQLIPS 266
Query: 173 APTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDL 232
L PI+ + P + K + Y N LK+ S A +++ +L + ++++ +
Sbjct: 267 GSGTLSPILSMQFPF---DTDSAKANIAYTRNLLKVISYA--PELQADILALITEKVVKI 321
Query: 233 DMEIGWD----------DILHDDFSKGIFEMELEDVEEAADDAEQVG--DELPSGSLSRK 280
D++I D D+LH + LED E DD V D L S K
Sbjct: 322 DVQIQVDMEDIEDEVGEDVLHAVSPEATM---LEDDENEVDDNASVASDDSLDVESRRVK 378
Query: 281 SLSGNLIAELLDSLMVLTFEHLESCEGTG--------------------------RLIEF 314
++ N++ LD ++ FE+ TG R +F
Sbjct: 379 AIKDNILK--LDGMIDSLFEYYAPPFTTGTLDDKENALDLLLSHFQSIILPTYRSRHSQF 436
Query: 315 VMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSL 374
++F+ P RFA + + + P + R SA +YLASF++R +S + +
Sbjct: 437 LLFHFSQSSPILVD-RFAATCVQLIFNKMQPGILRQSAAAYLASFVARGAHISGEVVRDV 495
Query: 375 L----KRLVDWCLEY-CNILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIM------DIP 423
L + L+Y G D+ + + FYS QA++Y+ CFR R + D P
Sbjct: 496 FDLLGTHLNNLRLDYEATCRGPDL--RRYGPFYSTAQALLYIFCFRWRDLTTAAMEGDTP 553
Query: 424 R----LKSQLLLMP------LETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFV 473
L+ + + P L + LNPLKVC P++VSEF + ++ V
Sbjct: 554 EQIDELEPEDITFPPSVKEVLHQAIHSKLNPLKVCSPAIVSEFARMAQHLNFMYVFSILE 613
Query: 474 FNDLLESELSRA--------FGGLER-----------LDMFFPFDPCLLKKSDRF 509
N L R+ F +ER LD +FPFDP L +S R+
Sbjct: 614 TNKRLRVSSFRSISAMADPRFSHVERETRAGDDLGYQLDAYFPFDPYQLPRSRRW 668
>gi|159130489|gb|EDP55602.1| RNA polymerase I specific transcription initiation factor RRN3
superfamily [Aspergillus fumigatus A1163]
Length = 712
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 121/474 (25%), Positives = 198/474 (41%), Gaps = 91/474 (19%)
Query: 113 SLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPL 172
+LAA+ G Y+ + L ML +NF KL + + ++ SR H AL+ + L+P
Sbjct: 208 NLAAAQGSYLGAVLKMLANNFGEIPKGTGKLPG-YAPVQAAEIYSRTHMALRHVMQLIPS 266
Query: 173 APTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDL 232
L PI+ + P + K + Y N LK+ S A +++ +L + ++++ +
Sbjct: 267 GSGTLSPILSMQFPF---DTDSAKANIAYTRNLLKVISYA--PELQADILALITEKVVKI 321
Query: 233 DMEIGWD----------DILHDDFSKGIFEMELEDVEEAADDAEQVGDE-LPSGSLSRKS 281
D++I D D+LH + LED E D+A D+ L S K+
Sbjct: 322 DVQIQVDMEDIEDEVGEDVLHAVSPEATM---LEDDENEVDNASVASDDSLDVESRRVKA 378
Query: 282 LSGNLIAELLDSLMVLTFEHLESCEGTG--------------------------RLIEFV 315
+ N++ LD ++ FE+ TG R +F+
Sbjct: 379 IKDNILK--LDGMIDSLFEYYAPPFTTGTLDDKENALDLLLSHFQSIILPTYRSRHSQFL 436
Query: 316 MFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLL 375
+F+ P RFA + + + P + R SA +YLASF++R +S + +
Sbjct: 437 LFHFSQSSPILVD-RFAATCVQLIFNKMQPGILRQSAAAYLASFVARGAHISGEVVRDVF 495
Query: 376 ----KRLVDWCLEY-CNILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIM------DIPR 424
L + L+Y G D+ + + FYS QA++Y+ CFR R + D P
Sbjct: 496 DLLGTHLNNLRLDYEATCRGPDL--RRYGPFYSTAQALLYIFCFRWRDLTTAAMEGDTPE 553
Query: 425 ----LKSQLLLMP------LETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVF 474
L+ + + P L + LNPLKVC P++VSEF + ++ V
Sbjct: 554 QIDELEPEDITFPPSVKEVLHQAIHSKLNPLKVCSPAIVSEFARMAQHLNFMYVFSILET 613
Query: 475 NDLLESELSRA--------FGGLER-----------LDMFFPFDPCLLKKSDRF 509
N L R+ F +ER LD +FPFDP L +S R+
Sbjct: 614 NKRLRVSSFRSISAMADPRFSHVERETRAGDDLGYQLDAYFPFDPYQLPRSRRW 667
>gi|47214221|emb|CAG00803.1| unnamed protein product [Tetraodon nigroviridis]
Length = 609
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 121/502 (24%), Positives = 207/502 (41%), Gaps = 115/502 (22%)
Query: 84 HESLLVSIFGMSMWNYDPDVMDALKGLIISL-AASNGKYVDSCLTMLVSNFTPPSYFL-- 140
HE L+ ++ + V++ + +L +A Y+ CL M+V +F +
Sbjct: 74 HEQLIYTVLRLPWVGRSQAVVEEYLAFLGNLVSAQTTVYLRVCLKMVVGHFILMRVMVCV 133
Query: 141 ------DKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHER 194
D E L R + H AL+ I VP L+PI ++ P +
Sbjct: 134 EGVNISDSEDEDDNLSRN---FDQCHKALQVIARYVPSTSHFLMPIFQEKFPFIQKSSRT 190
Query: 195 LKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDI------------L 242
L+ Y+ N L++ + +R +L ++ +++ LD+ DI
Sbjct: 191 LE---CYVHNLLRV--TVYIPSIRRDVLDLIIGKMLQLDVSASRSDIEDAEYIAMQNLQA 245
Query: 243 HDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHL 302
H +G+F+M DE S S +++ + +AE LD+LM + ++
Sbjct: 246 HHQKEEGLFDM----------------DEDLSASPPTLAVTSHPVAERLDTLMAVLMGYV 289
Query: 303 ES-CEGTGRL----------------------------IEFVMFYACALDPENCGLRFAT 333
+ C G L +++++FY C+ F
Sbjct: 290 KDICYVNGCLHVERTKDLYRDLLSVFDKLILPTHASCHVQYLLFYLCS---------FRL 340
Query: 334 MLADVFVSGLY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEY 385
LA+ F+ L+ P + R +AV YL SFL+RA+F+ + + L L+ W Y
Sbjct: 341 ALAESFLDHLWKILQNPSQPAVLRQAAVGYLGSFLARAKFIPVLTVRACLDLLISWIHGY 400
Query: 386 CNILGGD-----INPKAHRVFYSGCQAIMYVLCFRMRSIMD--IPRLKSQLLLMPLETVL 438
+ + H FYS CQA+ YVL FR R+++D + + L LE V+
Sbjct: 401 IDSQNSSGKQACCDVSLHGPFYSTCQALFYVLIFRHRAMLDGHMKKGLEYLQSFNLERVV 460
Query: 439 KHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESE------LSRAFGG---- 488
LNPLK+CLP+V + F ++ ++ F +N + ++ + + GG
Sbjct: 461 MCQLNPLKLCLPAVTTMFAAITRKYQI-----VFCYNVIERNKRHMLPVVRSSTGGDCVT 515
Query: 489 --LERLDMFFPFDPCLLKKSDR 508
LD FFPFDP LLK+S +
Sbjct: 516 AKTNPLDSFFPFDPYLLKRSGQ 537
>gi|405969349|gb|EKC34325.1| RNA polymerase I-specific transcription initiation factor RRN3
[Crassostrea gigas]
Length = 558
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 112/442 (25%), Positives = 191/442 (43%), Gaps = 26/442 (5%)
Query: 85 ESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLK 144
E L+ + + + D V+ + L++ L ++ Y+ + L MLV F+PP D +
Sbjct: 62 EDLVAVLLKLDWASRDVCVVREYQSLLLGLVCAHTYYLRASLRMLVKYFSPPIVKSDTEE 121
Query: 145 EPHGL-ERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYME 203
+ +R+ V VH LK+I D VP++ T L+P++ P + + + ++
Sbjct: 122 VSDEIRQRQEAVFLNVHMVLKAILDSVPMSSTILMPLLHDLFPYIGKP---VFVQECFVR 178
Query: 204 NTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKG-IFEMELEDVEEAA 262
N L++ S R +L + DR++ LD +I D D G ++ + D
Sbjct: 179 NLLQITSYLPNG--RQKILELITDRMLKLD-DIEQDLTRDLDNRDGSTYDKKCSDKPMTH 235
Query: 263 DDAE--QVGDELPSGSLSRKSLS-GNLIAELLDSL---MVLTFEHLESCEGTGRLIEFVM 316
+A V +L +S S G E L M+L F+ L ++F++
Sbjct: 236 REANILDVCMQLTLTYISNVCYSKGECDWEATKKLYREMLLVFDRLILPTHASCHVQFIL 295
Query: 317 FYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLK 376
FY C+ C F L + + R +AV Y+ S L+RA F+ + + L
Sbjct: 296 FYLCSTKTPICE-GFIDYLWKKVQNPNTESVFRQAAVGYIGSLLARAMFVPVSTVTACLD 354
Query: 377 RLVDWCLEYCN-----ILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLL 431
+ W Y + ++ D+N H FY CQA+ YV FR + I + +
Sbjct: 355 LMCQWVHLYLDSTSEDVVNADVN--HHGPFYCVCQAVFYVFVFRSKEIFETKKGHKWAES 412
Query: 432 MPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFND-LLESELSRAFGG-- 488
+ + ++ LNPL++CLP +V F ++ +L N + S G
Sbjct: 413 LNFQRIVTSRLNPLRICLPVIVKTFSSITRMHQLAFCDTIIERNKRCILPVTSNGLGSSS 472
Query: 489 -LERLDMFFPFDPCLLKKSDRF 509
+ LD +FPFDP LL +S RF
Sbjct: 473 VVTTLDSYFPFDPYLLNRSGRF 494
>gi|158299728|ref|XP_319773.4| AGAP009024-PA [Anopheles gambiae str. PEST]
gi|157013657|gb|EAA14800.4| AGAP009024-PA [Anopheles gambiae str. PEST]
Length = 602
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 119/471 (25%), Positives = 194/471 (41%), Gaps = 83/471 (17%)
Query: 88 LVSIFGMSMW-NYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEP 146
LV S W N + +A K ++ L+ Y + LV F P
Sbjct: 91 LVEFLLSSRWLNRSEEAQEAYKQFVVELSIVQKNYCTMTVAKLVKQFIPDRALQSSSSTV 150
Query: 147 HGL--ERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMEN 204
+ E + Q + +H + + +++P+ +L + + P + Y+ N
Sbjct: 151 SCIPSEEQQQQMGSLHDLIIRLKNVIPMIFDVVLTQLRKNFPYYKRPSGE---VAGYLYN 207
Query: 205 TLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVE---EA 261
L++ A + LL V L+ LD+ + I E E D E E
Sbjct: 208 VLRMTEYA--SIYCDELLDIVFYHLLQLDVNMP---------RSVIEETEYPDEEMMFEM 256
Query: 262 ADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESC---EGTG-RLI----- 312
D E E S + K + +AE LD M + F ++E +G G RL
Sbjct: 257 TDTGEGEDGESGEESDTMK----HPVAETLDWFMEIIFNYIEQTVKVDGQGDRLFKIVLN 312
Query: 313 ---------------EFVMFYACALDPENCGLRFATMLADVFVSGLYP--------PLTR 349
+F+MFY C+ F A+ F+S L+ P R
Sbjct: 313 QFDAHILPAHNTDHAQFIMFYICS---------FKLSYAEHFISSLWKNVNNLNKSPNVR 363
Query: 350 MSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEY---CNILGGDINPKAHRVFYSGCQ 406
++V Y+AS L+RA+++ ++ S+L + W Y C+ + + + KAH VFYS CQ
Sbjct: 364 QTSVGYIASMLARAKYVPLNYLKSMLLEMSHWVHNYIQRCDSMHYNQSLKAHLVFYSVCQ 423
Query: 407 AIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLF 466
AI YV+ FR + + + L + L +++ LNPL+VCLP+V + F ++A +L
Sbjct: 424 AIFYVVAFRANHLTSSAKNLTFLQSLQLSSIVTCQLNPLRVCLPTVATAFAGITRAYQLA 483
Query: 467 TVSETFVFNDLLESELSRAFGGLER---------LDMFFPFDPCLLKKSDR 508
+ +LE R + + LD FFPFDP +LKKS +
Sbjct: 484 YC------HTILERNARRKLATVYKNNTQLPEDCLDTFFPFDPYMLKKSGK 528
>gi|258566131|ref|XP_002583810.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237907511|gb|EEP81912.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 702
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 145/558 (25%), Positives = 239/558 (42%), Gaps = 105/558 (18%)
Query: 39 GDNDNYNQLVAVMHLSGR-LDPDNRALLE----TSLK----ALSGAVSYIDISHHESLLV 89
GD+D Y++L + + + L+ D + + TSLK L VS +D + S LV
Sbjct: 118 GDSDAYDRLKEIFSVDPKALELDGSPVYDLPTHTSLKNHLLGLLSNVSALDSTC--SGLV 175
Query: 90 SIFGMSMW-NYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHG 148
S W D + + +LAA+ G Y+ + L MLV+N +L +
Sbjct: 176 HAVLRSEWLGRDESYVKLFIRFLGTLAAARGGYLTAVLKMLVNNLCEVPSGAGRLPG-YS 234
Query: 149 LERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKL 208
R ++ RVH A++ I L+P L PI+ P + + K +V+ N +K+
Sbjct: 235 TVRNFEIYDRVHLAIQYIIQLIPTGSVTLSPILSSGFP---HDTDTAKSHIVFTRNLIKM 291
Query: 209 ESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDI---------LHDDFSKGIFEMELEDVE 259
A +RS +L + ++L+ +D++I D LH + + F +E +
Sbjct: 292 IDYA--PELRSDILALITEKLVKIDVQIQVDLDDLEDDDEEKLHREITAEAFAVE----D 345
Query: 260 EAADDAEQV--GDELPSGSLSR-KSLSGNLIAELLDSLMVLTFEHLESCEGTG------- 309
A+DD E V D+ S + R K+L N+ +D ++ L FE+ G
Sbjct: 346 HASDDEESVISDDDSTSPEMQRFKALKDNV--RKVDYMLDLLFEYYSGPFSHGSSDDKEN 403
Query: 310 -------------------RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRM 350
R +F++F+ P RFAT+ S +P + R
Sbjct: 404 SLDLLLAHFQNIILPAYRSRHSQFLLFHYSQSSPILID-RFATVCIQFIYSKSHPSVLRQ 462
Query: 351 SAVSYLASFLSRARFLSPCFIVS----LLKRLVDWCLEYC-NILGGDINPKAHRVFYSGC 405
A +YLASF++R ++ + L L EY N G D+ + + FY+
Sbjct: 463 YAAAYLASFVARGAHVTSEVVRDVFDLLCAHLESLISEYGPNCRGPDL--RRYATFYATV 520
Query: 406 QAIMYVLCFRMRSIMDIPR-----LKSQLLL----MP------LETVLKHDLNPLKVCLP 450
QA++Y+ CFR R + + L+S+L L P L + LNPLK+C P
Sbjct: 521 QAVLYMFCFRWRDLTTAAQEGDINLQSELDLDQVRFPPDISNVLHRAIHSKLNPLKICSP 580
Query: 451 SVVSEF---------------LQQSKAARLFTVSETFVFND---LLESELSRAFGGL-ER 491
++V EF L+ +K R+FT + + +E E +RA L +
Sbjct: 581 TIVREFARIAHHVGFMYVFPLLETNKRIRIFTFRSSISMDSRFGQIERE-TRADNSLGSQ 639
Query: 492 LDMFFPFDPCLLKKSDRF 509
+D +FPFDP L +S R+
Sbjct: 640 MDAYFPFDPYNLPRSRRW 657
>gi|242018464|ref|XP_002429695.1| transcription initiation factor ia, putative [Pediculus humanus
corporis]
gi|212514698|gb|EEB16957.1| transcription initiation factor ia, putative [Pediculus humanus
corporis]
Length = 555
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 94/330 (28%), Positives = 159/330 (48%), Gaps = 28/330 (8%)
Query: 199 VVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDIL-HDDFSKGI-FEMELE 256
+ Y+ N LK+ +R +L ++LI LD+ +DIL +++ S GI ++ E E
Sbjct: 180 MAYLYNILKIIQYQSD--LRINILQIAFNKLILLDVNSPREDILQYEESSDGILYDEEEE 237
Query: 257 DVEEAADDAEQVGDEL-----------PSGSLSRKSLSGNLIAELLDSLMVLTFEHLESC 305
+ + + L S + + EL + L+++ FE++
Sbjct: 238 ESNSKPKMKHPIANALDLMINVLFKFIKRECFSNEKFNKQKCVELYNDLLIV-FENVILP 296
Query: 306 EGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARF 365
I+FVMFY C+ D N F L + P+ R +AV Y++SFL+RA F
Sbjct: 297 THQCHHIQFVMFYICSFDT-NVASDFLKFLWKIVTLPNISPVIRQTAVGYISSFLARAGF 355
Query: 366 LSPCFIVSLLKRLVDWCLEYCNI----LGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMD 421
LS ++ + L +L DW Y + L ++ K H VFYS CQ++ Y++ FR + +++
Sbjct: 356 LSLGYLKNYLIKLSDWIHNYITLQDSSLECQLDFKQHCVFYSICQSMFYLIAFRHQDLLN 415
Query: 422 --IPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARL---FTVSETFVFND 476
I + Q L +P ++ LNPLK C+PS+V F ++A +L +T+ E+
Sbjct: 416 SSIKLVFLQSLNIP--KIVSSKLNPLKFCIPSIVENFAAITRAYQLAYCYTIIESNSRKT 473
Query: 477 LLESELSRAFGGLERLDMFFPFDPCLLKKS 506
L F +DM+FPFDP +L ++
Sbjct: 474 LPLVGKGGQFIINSIVDMYFPFDPYVLLRT 503
>gi|242803987|ref|XP_002484284.1| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Talaromyces stipitatus ATCC 10500]
gi|218717629|gb|EED17050.1| RNA polymerase I specific transcription initiation factor RRN3
superfamily [Talaromyces stipitatus ATCC 10500]
Length = 697
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 119/505 (23%), Positives = 208/505 (41%), Gaps = 100/505 (19%)
Query: 87 LLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEP 146
L+ ++ G D + + +LAA++ Y+ S L MLV+ F + P
Sbjct: 170 LVHAVLGSEWLGRDESYVKLFVRFLGNLAATHTGYMRSVLKMLVNYFG---------EIP 220
Query: 147 HGLER--------KHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMI 198
G R ++ RVH AL+ I L+P + L PI+ Q+ P + +
Sbjct: 221 KGTGRIPGYSSVTHEEIYDRVHMALRYIMQLLPAGSSALSPILAQQFPF---DTDSARAN 277
Query: 199 VVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWD-DILHDDFSKGIFE----- 252
V Y N ++L A +R+ +L V +RL+ +D++I D + D+ + I E
Sbjct: 278 VFYTRNLIRLIEYA--PELRADILSLVTERLVKIDVQIQVDMEEFEDEVGEDILEELSRP 335
Query: 253 MELEDVEEAAD-DAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTG-- 309
+E+E ++E D D E V D+ R + I++ +DS++ FE S TG
Sbjct: 336 LEIEYMDEEDDSDGESVLDDEADIEARRLQTVKDNISK-VDSMIDQLFEFYSSPFNTGTD 394
Query: 310 ------------------------RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYP 345
R +F++F+ P+ +F + + S P
Sbjct: 395 DTKSQILDLLLSHFVNYVLPTYRSRHTQFLVFHFSQFSPDLVE-KFVSTCMHIIDSKTQP 453
Query: 346 PLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVD-----WCLEYCNILGGDINPKAHRV 400
+ R SA +YL SF++R + ++ + + + L + G D+ + +
Sbjct: 454 AIMRQSAAAYLGSFVARGKHVTSRTVRDIFEMLGENLSHLRTTYEATCRGPDL--RRYGP 511
Query: 401 FYSGCQAIMYVLCFRMRSIMDIP-----------RLKSQLLLMP------LETVLKHDLN 443
FY+ QAI+Y+ CFR R + + + P L + N
Sbjct: 512 FYASTQAILYIFCFRWRDLTTAAEENDGVEDDDDDFDLEDVTFPPSVKEILHQAIYSRFN 571
Query: 444 PLKVCLPSVVSEF---------------LQQSKAARLFTVSETFVFND----LLESELSR 484
PLKVC P++V+EF L+ +K R+ + +D ++E E+
Sbjct: 572 PLKVCSPAIVTEFARIAHRLRFMYVYSLLESNKRIRMSSFRSITTLSDPRFSIVEREIRA 631
Query: 485 AFGGLERLDMFFPFDPCLLKKSDRF 509
G ++LD +FPFDP L +S R+
Sbjct: 632 GNDGGDQLDAYFPFDPYQLPRSRRW 656
>gi|156547081|ref|XP_001602153.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 [Nasonia vitripennis]
Length = 601
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 101/399 (25%), Positives = 185/399 (46%), Gaps = 58/399 (14%)
Query: 144 KEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYME 203
K P + K +S +H L+ ++P++ L+ + P V E + Y+
Sbjct: 153 KCPENYKNK---ISHIHDTLRKFLKIIPMSSDVLVQSLTSLYPHVS---EGIVPTQQYLF 206
Query: 204 NTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILH--------DDFSKGIFEMEL 255
+ +++ A +R +L +++RL+ LD+ + +I + +D ++ IF+++
Sbjct: 207 SLIQILDYA--PQLRKDILCLIINRLVALDVSVPPSEIQNCEDDEDMEEDENEAIFKLDD 264
Query: 256 EDVEEAADDAEQVGDELPSGSLSRKSLSGNLI---------AEL-LDSLMVL------TF 299
++E + + + P + + L +L +DSL ++ TF
Sbjct: 265 TNIENNSKKSHSTEMKHPGAQMLDVCMEQVLAYVYNCCHVEGQLQIDSLRIIYNDLLYTF 324
Query: 300 EHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLY--------PPLTRMS 351
E + ++F+MFY C+ F +A+ F+ L+ P+ R S
Sbjct: 325 ERIILTTHASHHVQFIMFYLCS---------FKLTVAETFIRWLWQKVSNPNVAPIIRQS 375
Query: 352 AVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCN----ILGGDINPKAHRVFYSGCQA 407
AVSY+AS L+RA +++ + S+L + W Y + + + + + H VFYS CQA
Sbjct: 376 AVSYIASLLARATYITVGLLQSVLLEMSTWIHSYISSQDSLECANSDVRVHTVFYSVCQA 435
Query: 408 IMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARL-- 465
+ Y+L FR + I+D + L + L ++ LNPLKVC P+VV F ++ +L
Sbjct: 436 MFYLLAFRHKDIIDGKKHLLFLQGLNLTKIVTCRLNPLKVCQPAVVQNFAAVTRNYQLAY 495
Query: 466 -FTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLL 503
+TV E ++L + + F + LD FFPFDP LL
Sbjct: 496 CYTVIERNSRSNLPVLQTTNRF--INWLDTFFPFDPYLL 532
>gi|388579292|gb|EIM19617.1| RNA polymerase I-specific transcription initiation factor RRN3
[Wallemia sebi CBS 633.66]
Length = 679
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 146/606 (24%), Positives = 246/606 (40%), Gaps = 142/606 (23%)
Query: 26 VYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRALLETSLKALSGAVSYIDISHHE 85
V V +AL + G+ Y++L++ + D L+ L ALS VS +D SH
Sbjct: 42 VSFVNDALEKKKEGEIGPYDELISQFTST---DIQEFEKLKPWLDALSNVVSQLDKSHL- 97
Query: 86 SLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFT--PPSYFLDKL 143
SL+ +I +S + K + L +++ Y+ L L+ FT S L+KL
Sbjct: 98 SLVEAIMSISWTVSSHSFVQTYKTFVFMLVSAHPGYIKLLLGKLIKGFTHQANSKALEKL 157
Query: 144 KE--PHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVY 201
E + L+R+ V R H L + DLVP P+ L PI+++ P H + +++ V Y
Sbjct: 158 SEEDKNNLKRR-TVFDRSHNLLIKLLDLVPTLPSLLQPILIRHFP--HKRENKVQQ-VTY 213
Query: 202 MENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIG----WDDILHDDFSKGIFEMELED 257
M+N L + + + + +VDR I +D+EI D +D ++ IFE E +
Sbjct: 214 MKNLLSIINYCPA--LSDEIFGLIVDRTIQIDVEIQVELEDLDDELEDETEAIFETEPDI 271
Query: 258 VEEAADDAEQVGDELPSGSLSRKSLSGNL----------------------------IAE 289
E A VG S S NL + +
Sbjct: 272 FERA------VGRTYSDEESSDDSDDENLDFLSDLSSDDGLSDDSQDAPMQVSAIKDLVQ 325
Query: 290 LLDSLMVLTFEHLESCEGT-------------------------GRLIEFVMFYACALDP 324
LD ++++ FEHLE R +F +F + D
Sbjct: 326 KLDDMLLILFEHLEKTRQNTQELQLNQFSTLLSVFERTILPTFRSRYTQFTLFKYSSYDA 385
Query: 325 ENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLE 384
+ +L+ P +TR+ A SYLAS++SRARF+ KR+V
Sbjct: 386 HFADVFQGMLLSKAIFQSDEPSVTRIVAASYLASYVSRARFIDS----DSTKRVVGLM-- 439
Query: 385 YCNILGGDIN--PK--------AHRVFYSGCQAIMYVLCFRMRSIM---DIPRLKSQLLL 431
C+ +G +++ P+ + V+++ QA+ Y+ CFR R +M D +
Sbjct: 440 -CDYIGNELDNVPQPITNFKLNTYSVWFAIVQAVFYIFCFRWRDLMLSNDDETIFDHAEA 498
Query: 432 MP------------LETVLKHDLNPLKVCLPSVVSEFLQQSKAARLF---TVSETFVFND 476
+P L+ + LNPLKVC +VV++F + S+ A ++ E+ +D
Sbjct: 499 LPIGGNTWIPGLDVLQRAILSPLNPLKVCASTVVNQFAKVSQFAGFLYCHSIIESNKRSD 558
Query: 477 ---------------LLESE---------------LSRAFGGLERLDMFFPFDPCLLKKS 506
+ +S+ +S+ G LD FFPFDP L ++
Sbjct: 559 VTPSSMSSLSTSLLGVTQSQSAEPYQKDTQTRSLAVSKNNGTEIELDSFFPFDPYRLPRT 618
Query: 507 DRFANA 512
++ ++
Sbjct: 619 QKYISS 624
>gi|312380362|gb|EFR26379.1| hypothetical protein AND_07611 [Anopheles darlingi]
Length = 637
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 121/477 (25%), Positives = 203/477 (42%), Gaps = 95/477 (19%)
Query: 87 LLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNF--TPPSYFLDKLK 144
L+ + M + + ++A K +I L+ + + +T LV F TP + +
Sbjct: 114 LVDQLLSMRWLDRSGECVEAYKNFVIELSIVHKNFCPMTITKLVKLFIPTPAARNQWNVG 173
Query: 145 EPHGLER-----KHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIV 199
P +R H ++ R+ + IFD+V + P + PT +
Sbjct: 174 VPEDGQRLQLAAVHDLIMRLTNVIPMIFDVVLTQLRKNFP--YHKKPTYE--------VT 223
Query: 200 VYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKG--IFEMELED 257
Y+ N L++ A + LL V +L+ LD+ + DI ++ IF+M +
Sbjct: 224 GYLYNVLQVTEYA--SIYCDELLDIVFHQLLQLDVNVPRSDIEATEYPDEDMIFDMAING 281
Query: 258 VEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESC---EG--TGRL- 311
EE D+ E+ + P +AE LD M + F +E EG RL
Sbjct: 282 EEEGKDEGERTSMKHP-------------LAETLDCFMHIMFNFIERSIKDEGGQADRLF 328
Query: 312 -------------------IEFVMFYACALDPENCGLRFATMLADVFVSGLYP------- 345
++F++FY C+ F A+ F+S L+
Sbjct: 329 KIMFKQFETHVLPTHNTDHVQFLLFYFCS---------FKLSYAEHFISSLWKNVSNPNI 379
Query: 346 -PLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEY---CNILGGDINPKAHRVF 401
P R ++V Y+AS L+RA+F+ F+ ++L+ L W Y + + + KAH VF
Sbjct: 380 SPTVRQASVGYIASMLARAKFVPLSFLKTMLQELSQWVHGYIQRSDSMHHNQTLKAHLVF 439
Query: 402 YSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSK 461
YS CQAI YV+ FR + + + S L + L +++ LNPL+VCLP+V + F ++
Sbjct: 440 YSVCQAIFYVVAFRSKHLTANAKNLSFLQSLQLSSIVTCHLNPLRVCLPTVATAFAGVTR 499
Query: 462 AARLFTVSETFVFNDLLESELSRAFGGL----------ERLDMFFPFDPCLLKKSDR 508
+ +L + +LE R + + LD FFPFDP +L KS +
Sbjct: 500 SYQLAYC------HTILERNARRKLATVYSNSSAQTPEDCLDTFFPFDPYMLIKSGQ 550
>gi|407929195|gb|EKG22030.1| RNA polymerase I specific transcription initiation factor RRN3
[Macrophomina phaseolina MS6]
Length = 672
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 134/583 (22%), Positives = 245/583 (42%), Gaps = 104/583 (17%)
Query: 15 MEDVNISDLELVYH-VREALTSVQSGDNDNYNQLVAVMHL--SGRLDPDNRALLETSLKA 71
+ED N +EL+ VR A+ +GD+ +Y+++ + + P + LL + A
Sbjct: 60 LEDYNEKGIELIREEVRRAIDKHVAGDSASYDEIKTLFKARPTASAAPSTK-LLSKYVVA 118
Query: 72 LSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVS 131
L G VS ++ + L+ +I D L+ SL +++G Y S L LV
Sbjct: 119 LIGNVSLLN-KNCSGLVHAILDCQWLARDESFKRLYVTLLASLMSAHGGYTGSVLQSLVK 177
Query: 132 NFTPPSYFLDKLKEPHGLE---RKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTV 188
+F Y + H + + ++ RVH L+ + L+P A L I+ PT
Sbjct: 178 HF----YGVPSPNNRHDTDPPVTRSELRQRVHETLRRLLILIPSASGVLTNILASTFPT- 232
Query: 189 HNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWD------DIL 242
+ ++ + Y+ N +++ A ++ T+L + ++L+ LD++I D ++
Sbjct: 233 --PQDSARIYLTYLNNLMEVIEYAPE--LQGTVLALITEKLVKLDVQIQVDMEDLEDELE 288
Query: 243 HDDFSKGIFEMELEDVEEAA---DDAEQVGDELPSGSLSRKSLSGNLIAELLDSL----- 294
+ ++++E ++ E+ DD ++ + S S I EL DS+
Sbjct: 289 ESVLQQALYKLEEDNDEDEGSELDDDDEENSDYESSSDDGMDHDQRRIQELRDSVGKMDA 348
Query: 295 ---MVLTFEHLESCEGT------------------------GRLIEFVMFYACALDPENC 327
++ + H EG R +F++F+ P
Sbjct: 349 ILDILFGYYHRVFVEGKHVDAQQSFEFLLSQFKNIILPTYRSRHTQFLLFHYAQTTPTFI 408
Query: 328 GLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLS-----PCFIVSLLKRLVDWC 382
+F+ A++ P + R++A +YLASF++R +S FI+ L + +D+
Sbjct: 409 A-QFSAACAELAFDKTRPQIVRLAAAAYLASFIARGAHVSRETVREIFII--LGKNLDYF 465
Query: 383 LEY--CNILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIM-----------DIPRLKSQL 429
+ N G D+ + + FY+ QA++Y+ CFR R ++ D+ +L
Sbjct: 466 RQAHEVNCKGPDL--RRYTNFYALSQALLYIFCFRWRDLLTNETLSDADIEDVLYSNEEL 523
Query: 430 LLMP-----LETVLKHDLNPLKVCLPSVVSEF---------------LQQSKAARLFTVS 469
MP ++ + NPLKVC P VV++F L+Q+K RL
Sbjct: 524 SWMPGIVDMMKRNIYSKFNPLKVCSPGVVTQFARIANHLRFIYVFPLLEQNKRLRLSRNI 583
Query: 470 ETFVFNDLLESELSRAFGGLE---RLDMFFPFDPCLLKKSDRF 509
V + E E + E +LD +FPFDP L +S R+
Sbjct: 584 SAAVMYGVQERETALTAKNSESALQLDSYFPFDPYNLPRSKRW 626
>gi|452001532|gb|EMD93991.1| hypothetical protein COCHEDRAFT_1201821 [Cochliobolus
heterostrophus C5]
Length = 897
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 143/573 (24%), Positives = 246/573 (42%), Gaps = 92/573 (16%)
Query: 13 HEMEDVNISDLELV-YHVREALTSVQSGDNDNYNQLVAVMHLS-GRLDPDNRALLETSLK 70
H + + N ELV VR A+ +GD Y+ L A+ + + + LL+ L
Sbjct: 260 HVLREYNEKSAELVGEEVRRAMEKHATGDKAAYDGLRALFREAPTSANAPSSQLLQKYLV 319
Query: 71 ALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLV 130
AL+G +D + + L+ ++ S + D + + + + SL + YV + L MLV
Sbjct: 320 ALTGHTPQLD-HNCKGLVHAVIDCSWVARNEDFVRSYRNFLRSLLSVQSGYVSTVLQMLV 378
Query: 131 SNFTP-PSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVH 189
F PS + +P ++R ++L+RVH L I P+ + L PI+ P
Sbjct: 379 DMFLDLPSVNARQHDDP-PIQRV-RLLARVHETLVLILRYTPMVSSYLAPIIASTFPF-- 434
Query: 190 NKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRL--IDLDMEIGWDDILHDDFS 247
+E K Y+ N ++ A +R +L V D+L ID M++ +DI DD
Sbjct: 435 -SNESAKKHAEYIRNIYQVTEYA--PEIRGEVLTLVTDKLCKIDAQMQMDMEDI-DDDLE 490
Query: 248 KGIFEMELEDVEEAADDAEQVG----DELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLE 303
+ + + + E+ D ++ + L K + ++ LD++M + F + +
Sbjct: 491 ERLVGDAIHNEEDDDDMSDDGSVSSHESLEPEEQRLKDIKDTMLK--LDTVMDVQFAYYD 548
Query: 304 SCEGTGRLIE--------------------------FVMFYACALDPENCGLRFATMLAD 337
S G L+E F++F+ L + RF +
Sbjct: 549 SIFEKGDLLEMDRTYQSLIAQFQSIIIPTYRSRHTQFILFHFSQLSTDFME-RFVDTCSH 607
Query: 338 VFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNIL------GG 391
+ + PPL R SA +YLAS+++R + P F+V + L+ LE +L G
Sbjct: 608 LAIDSNRPPLLRASACAYLASYIARGAHV-PGFVVRNVFDLLCSQLERLRMLHEPKCTGP 666
Query: 392 DINPKAHRVFYSGCQAIMYVLCFRMRSIMDIP--RLKSQLLLM-----------PLETVL 438
D+ + + +Y+ QA++Y CFR R ++ P L + +M LE V
Sbjct: 667 DL--RRYGTYYAIAQALLYAFCFRWRDLIVTPDGSLPTDADIMYHEGDFEWHRSTLEIVR 724
Query: 439 KH---DLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDL-------LESELSRAFGG 488
++ LNPL++C P +V +F + +K R FT +T V + L S GG
Sbjct: 725 RNIFCKLNPLRICAPDIVKQFGRIAKHLR-FTYVDTLVETNKRVRLARSLASSYLTGIGG 783
Query: 489 LER------------LDMFFPFDPCLLKKSDRF 509
E +D +FPFDP +L +S R+
Sbjct: 784 RETALTGKKGEEAFLMDAYFPFDPYVLPRSKRW 816
>gi|350413553|ref|XP_003490029.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Bombus impatiens]
Length = 567
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 122/535 (22%), Positives = 220/535 (41%), Gaps = 94/535 (17%)
Query: 28 HVREALTSVQSGD-NDNYNQLVAVMHLSGRLDPDNRALLETSLKALS--GAVSYIDISHH 84
+++ + + ++G+ +Y L+ ++ S D D L + +S G + H
Sbjct: 38 NLKSIIYNFEAGNGTKDYEDLICILRDSNIKDTDLIEFLSNVRQCISLLGPI-------H 90
Query: 85 ESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLK 144
+ + ++ + N DV A K I L Y + + LV F P D+ K
Sbjct: 91 KVFVETLLQIKWTNRSIDVTSAYKAFIEDLICMQIHYAKNTIDSLVEQFKPDEDNDDEWK 150
Query: 145 EPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMP-TVH--NKHERLKMIVVY 201
E Q L+ +H L+ I +VP++ LL + R P VH HE VY
Sbjct: 151 NEKCKEEDIQRLNHIHNVLQKILKVVPMSSKLLLQSLRARFPYIVHGTRTHE------VY 204
Query: 202 MENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEA 261
+ +++ S A +RS +L +++RL+ LD+ I E+E E+ E+
Sbjct: 205 VYALIQILSYAPQ--LRSDILSLIINRLMVLDVNIPR------------LEIENEEDEDL 250
Query: 262 ADDAEQVGDELPSGSLS------RKSLSGNLIAELLDSLMVLTFEHLESC---------- 305
DDA + L + + ++ + IA LD M L +++ +C
Sbjct: 251 MDDASECDSILGNVNNVVEENNITETDEVHPIAHKLDMCMELILKYMYNCCFINGVLQVE 310
Query: 306 -------------------EGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLY-- 344
+ ++++MFY C+ F T +A+ FV L+
Sbjct: 311 CLRSLYFDILKIFETVILPTHASQYVQYIMFYICS---------FKTAVAEAFVDWLWQK 361
Query: 345 ------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGG----DIN 394
P + R S+V Y+AS L+ A F++ + ++ + W +Y N+ +
Sbjct: 362 ASNPNVPSIIRQSSVVYIASLLAAATFVTTGLVKAVQFEISKWIHDYINMQDHSNYIEDG 421
Query: 395 PKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVS 454
K H VFYS C+A+ ++ R D + L + L ++ LNPLK C P +
Sbjct: 422 NKEHSVFYSVCEALFLIIIKRHNDYPDSKKYMLYLQELDLAKIITCKLNPLKACHPEIAH 481
Query: 455 EFLQQSKAARL---FTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKS 506
F + ++ +L +TV E N L + + G +++F PF+ L++S
Sbjct: 482 SFAEITRIYQLAYCYTVIENNTRNQLPLFDSKK--GTTPTVEIFSPFNTYTLQQS 534
>gi|189211901|ref|XP_001942278.1| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187979477|gb|EDU46103.1| ribosomal DNA transcription factor Rrn3 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 689
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 150/583 (25%), Positives = 247/583 (42%), Gaps = 116/583 (19%)
Query: 15 MEDVNISDLELV-YHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRA-----LLETS 68
+ D N LELV VR A+ +G+ Y+ L A+ R P + + LL+
Sbjct: 60 LADPNEKSLELVGEEVRRAIEKHATGERAAYDGLKALF----RESPTSASAPLSHLLQKY 115
Query: 69 LKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTM 128
+ AL+ +D S+ + L+ ++ + D + + + + L + Y+ + L M
Sbjct: 116 VIALTNNTPLLD-SNCKGLVHAVIDCKWIARNDDFVRSFQIFLRRLLSVQAGYMSTILQM 174
Query: 129 LVSNF-TPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPT 187
LV F PS + +P ++R H + +RVH LKSI P+A + L PI+ P
Sbjct: 175 LVDMFLGAPSPNARQTDDP-PIQRVH-IQARVHQTLKSILRYSPMASSFLSPIISNTFPI 232
Query: 188 VHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFS 247
HE K+ V ++ N + A +R +L V D+L +D ++ + DD
Sbjct: 233 ---SHESAKLHVEFIRNIFTVTEYA--PEIRGEILALVTDKLCKIDAQMQ---MDMDDMD 284
Query: 248 KGIFEMELEDV---EEAADDAEQVGDELPSGSLSRKSLSGNLIAEL---LDSLMVLTFEH 301
+ E + D EE D+A G + GSL + I ++ LD +M L F +
Sbjct: 285 DDLEERLVNDAIYDEEDDDNASDAGSDSSEGSLDPEEQRLKDIRDMMLKLDIVMDLQFSY 344
Query: 302 LES------CEGTGRLIE--------------------FVMFYACALDPENCGLRFATML 335
S + + R+ E FV+F+ L P L F
Sbjct: 345 YASIFDKRDVKESDRMYETLLAQFQSIIIPTYRSRHAQFVLFHFSQLSPHFMEL-FVDAC 403
Query: 336 ADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIV--------SLLKRLVDWCLEYCN 387
+ + + PPL R SA +YLAS+++R + P F+V S L+RL C
Sbjct: 404 SRLAIDANRPPLLRASACAYLASYIARGAHV-PGFLVRDVFATLCSQLERLRATHEPKCT 462
Query: 388 ILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLET-VLKHD----- 441
G D+ + + +Y+ QA++Y CFR R ++ K +P +T ++ HD
Sbjct: 463 --GPDL--RRYGTYYAIAQALLYAFCFRWRDLIVTTDGK-----LPSDTDIMYHDGDFLW 513
Query: 442 ---------------LNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRA- 485
LNPL++C P +V +F + +K R FT ++ V + LSR+
Sbjct: 514 HGKTLEILRRNIFCKLNPLRICAPDIVKQFGRIAKHLR-FTYVDSLVETN-KRVRLSRSV 571
Query: 486 -------FGGLER------------LDMFFPFDPCLLKKSDRF 509
GG E +D +FPFDP +L +S R+
Sbjct: 572 ASSYLTGIGGRETALTGKKGEEAFLMDAYFPFDPYVLPRSKRW 614
>gi|326430651|gb|EGD76221.1| hypothetical protein PTSG_00924 [Salpingoeca sp. ATCC 50818]
Length = 865
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 105/215 (48%), Gaps = 23/215 (10%)
Query: 312 IEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFI 371
++F+ FYA RF + + +A++Y+ SF++RA +LS F+
Sbjct: 356 VQFIWFYAAHYGENQLARRFVQECMAKLGDPTIAVIVQQAAIAYVGSFVARANYLSLNFV 415
Query: 372 VSLLKRLVDWCLEYCNILGGDINPKAHR--VFYSGCQAIMYVLCFRMRSIMDIPRLKSQL 429
S+++ VDW Y + D P HR FY+ CQ++ Y+LCFR+R MD P L
Sbjct: 416 ASVIEECVDWAKAYIDRHRTD-TPNVHRHTPFYALCQSLFYMLCFRVRDFMDEPDGHRWL 474
Query: 430 LLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGG- 488
+ LET+++ LNPL V P+VV EF ++A R + V V ++L + + G
Sbjct: 475 KSLGLETIVRCSLNPLMVVTPAVVDEF---ARAMRAYEVMLCDV--EVLRNRNASVGAGT 529
Query: 489 --------------LERLDMFFPFDPCLLKKSDRF 509
L L+ FFPFDP L +S +F
Sbjct: 530 SAHIVAAVENGDLCLNDLEFFFPFDPIALPRSLQF 564
>gi|451849716|gb|EMD63019.1| hypothetical protein COCSADRAFT_37893 [Cochliobolus sativus ND90Pr]
Length = 692
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 142/575 (24%), Positives = 242/575 (42%), Gaps = 96/575 (16%)
Query: 13 HEMEDVNISDLELV-YHVREALTSVQSGDNDNYNQLVAVMHLS-GRLDPDNRALLETSLK 70
H + + N ELV VR A+ +GD Y+ L A+ + + + LL+ L
Sbjct: 55 HVLREYNEKSAELVGEEVRRAMEKHATGDKAAYDGLRALFREAPTSANAPSSQLLQKYLV 114
Query: 71 ALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLV 130
AL+G +D + + L+ ++ S + D + + + + SL + YV + L MLV
Sbjct: 115 ALTGHTPQLD-HNCKGLVHAVIDCSWVARNEDFVRSYRNFLRSLLSVQSGYVSTVLQMLV 173
Query: 131 SNFTP-PSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVH 189
F PS + +P ++R ++L+RVH L I P+ + L PI+ P
Sbjct: 174 DMFLDLPSVNARQHDDP-PIQRV-RLLARVHETLVLILRYTPMVSSYLAPIIASTFPF-- 229
Query: 190 NKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRL--IDLDMEIGWDDILHDDFS 247
+E K Y+ N ++ A +R +L V D+L ID M++ +DI DD
Sbjct: 230 -SNESAKKHAEYIRNIYQVTEYA--PEIRGEVLTLVTDKLCKIDAQMQMDMEDI-DDDLE 285
Query: 248 KGIFEMELEDVEEAADDAEQVG----DELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLE 303
+ + + + E+ D ++ + L K + ++ LD +M + F + +
Sbjct: 286 ERLVGDAIHNEEDDDDMSDDGSVSSHESLEPEEQRLKDIKDTMLK--LDIVMDVQFAYYD 343
Query: 304 SCEGTGRLIE--------------------------FVMFYACALDPENCGLRFATMLAD 337
S G L+E F++F+ L + RF +
Sbjct: 344 SIFEKGDLLEMDRTYQSLIAQFQSIIIPTYRSRHTQFIIFHFSQLSTDFME-RFVDTCSH 402
Query: 338 VFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNIL------GG 391
+ + PPL R SA +YLAS+++R + P F+V + L+ LE +L G
Sbjct: 403 LAIDSNRPPLLRASACAYLASYIARGAHV-PGFVVRNVFDLLCSQLERLRMLHEPKCTGP 461
Query: 392 DINPKAHRVFYSGCQAIMYVLCFRMRSIM------------------DIPRLKSQLLLMP 433
D+ + + +Y+ QA++Y CFR R ++ D +S L ++
Sbjct: 462 DL--RRYGTYYAIAQALLYAFCFRWRDLIVTSDGSLPTDADIMYHEGDFEWHRSTLEIVR 519
Query: 434 LETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDL-------LESELSRAF 486
K LNPLK+C P +V +F + +K R FT +T V + L S
Sbjct: 520 RNIFCK--LNPLKICAPDIVKQFGRIAKHLR-FTYVDTLVETNKRVRLARSLASSYLTGI 576
Query: 487 GGLER------------LDMFFPFDPCLLKKSDRF 509
GG E +D +FPFDP +L +S R+
Sbjct: 577 GGRETALTGKKGEEAFLMDAYFPFDPYVLPRSKRW 611
>gi|335310436|ref|XP_003362032.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3, partial [Sus scrofa]
Length = 430
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 105/223 (47%), Gaps = 37/223 (16%)
Query: 312 IEFVMFYACALDPENCGLRFATMLADVFVSGLY--------PPLTRMSAVSYLASFLSRA 363
++F MFY C+ F A+ F+ L+ P + R +A +Y+ SFL+RA
Sbjct: 142 VQFFMFYLCS---------FKLGFAEAFLEHLWKKLQDPNNPAIIRQAAANYIGSFLARA 192
Query: 364 RFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA------HRVFYSGCQAIMYVLCFRMR 417
+F+ + S L LV+W Y N D KA H FYS CQA+ Y FR R
Sbjct: 193 KFIPLITVKSCLDLLVNWLHVYLN--NQDSGAKAFCDVALHGPFYSACQAVFYTFVFRHR 250
Query: 418 SIMDIPRLKSQLLLMP---LETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVF 474
++ LK L + E ++ LNPLK+CLPSVV+ F + +L
Sbjct: 251 QLLS-GNLKEGLRYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITSKYQLVFCYTLIER 309
Query: 475 NDL--LESELSRAFGG------LERLDMFFPFDPCLLKKSDRF 509
N+L L + GG LD FFPFDPC+LK+S +F
Sbjct: 310 NNLKMLPVXIRNTAGGDSVQTCTNPLDTFFPFDPCVLKRSKKF 352
>gi|302837520|ref|XP_002950319.1| hypothetical protein VOLCADRAFT_120872 [Volvox carteri f.
nagariensis]
gi|300264324|gb|EFJ48520.1| hypothetical protein VOLCADRAFT_120872 [Volvox carteri f.
nagariensis]
Length = 881
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 121/303 (39%), Gaps = 100/303 (33%)
Query: 287 IAELLDSLMVLTFEHLESCEGTGRL-----------------------IEFVMFYACALD 323
+A +DS+M L FEHL+ G L +F++FY C +
Sbjct: 417 MANKMDSMMELAFEHLQKRIAAGELRQLWDTLLSCFERTILNTHRSKFTQFLLFYVCIHN 476
Query: 324 PENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCL 383
P +C A P+TR + +YLASFL+RA F+ +V L+ L + L
Sbjct: 477 PGHCSQSLA-------------PITRAACAAYLASFLARAAFVPETVVVKTLQELASFSL 523
Query: 384 EYCNIL-----------------------------------GGDINPKAHRVFYSGCQAI 408
+YC + + H++FY+ QAI
Sbjct: 524 DYCRGQSGGLSASSSAGNLSARTLTNSGLQDSAALMALTAETANAQTQRHQMFYAAVQAI 583
Query: 409 MYVLCFRMRSIMD--------IPRLKSQLLLMPLET--------------VLKHDLNPLK 446
+YVLC+ M++++ R + +T +L H L PL
Sbjct: 584 LYVLCYHMQALVGDMLQQQQSQERGQEGATDSGEQTDAHNKGNKDLAESVLLNHRLQPLG 643
Query: 447 VCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKS 506
VCLPSV +EF+ Q AA L V + + S+ L+MFFPFDP LL++S
Sbjct: 644 VCLPSVAAEFIHQ--AASLGVVDLQSLLTQVEPETRSQ-----RPLEMFFPFDPYLLRRS 696
Query: 507 DRF 509
RF
Sbjct: 697 SRF 699
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 95/186 (51%), Gaps = 12/186 (6%)
Query: 65 LETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDS 124
L T + ++ VS I HES++ + + +WN P V+ A+ +L +N + S
Sbjct: 53 LTTLIGCITANVSAIHERKHESIVSDLLSIKLWNTAPAVLSAVLDFTRNLVVANSAFTHS 112
Query: 125 CLTMLVSNFTPPSYFLDKLKEP----HGLERKHQVLSRVHAALKSI----FDLVPLAPTR 176
CL ++V +FTPP EP HG R + VH +L I LVP APT
Sbjct: 113 CLQLIVYSFTPPPEATSP-GEPSEDLHGPWRPSEQALAVHQSLLPILVRVLALVPTAPTN 171
Query: 177 LLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEI 236
+LP++V +MP H +R K +Y+ ++ G +R LL AVV+ L+ +D+EI
Sbjct: 172 VLPLIVSQMP--HKLQDRNKQ-CLYLSALFRIAEDRTGAPIREALLTAVVEHLLSMDVEI 228
Query: 237 GWDDIL 242
W+DI+
Sbjct: 229 KWEDIV 234
>gi|340710138|ref|XP_003393653.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase I-specific
transcription initiation factor RRN3-like [Bombus
terrestris]
Length = 566
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 121/534 (22%), Positives = 214/534 (40%), Gaps = 93/534 (17%)
Query: 28 HVREALTSVQSGD-NDNYNQLVAVMHLSGRLDPDNRALLETSLKALS--GAVSYIDISHH 84
+++ + + ++G+ +Y L+ ++ S D D L + +S G + H
Sbjct: 38 NLKSIIYNFEAGNGTKDYEDLICILRDSNIKDTDLIEFLSNVRQCISLLGPI-------H 90
Query: 85 ESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLK 144
+ + ++ + N DV A K I L Y + + LV F P + K
Sbjct: 91 KVFVETLLQIKWTNRSIDVTSAYKAFIEDLICMQIHYAKNTIDNLVEQFKPDEDNNAEWK 150
Query: 145 EPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMP-TVH--NKHERLKMIVVY 201
E Q L+ +H L+ I +VP++ LL + R P VH HE VY
Sbjct: 151 NEECKEEDIQRLNHIHNVLQKILKVVPMSSKLLLQSLRARFPYIVHGTRTHE------VY 204
Query: 202 MENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEA 261
+ +++ S A +RS +L +++RL+ LD+ I E+E ED E+
Sbjct: 205 VYALIQILSYAPQ--LRSDILSLIINRLMVLDVNIPR------------LEIENEDDEDL 250
Query: 262 ADDAEQVGDELPSGSLSRKSLSGNL-----IAELLDSLMVLTFEHLESC----------- 305
DD + L + + ++ A LD M L ++ +C
Sbjct: 251 MDDTSEYDSILGNVNNVEENNITETDKIHPTAHKLDMCMELILNYMYNCCFINGVLQVDC 310
Query: 306 ------------------EGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLY--- 344
+ ++++MFY C+ F T +A+ FV L+
Sbjct: 311 LRSLYFDILKIFETIILPTHASQYVQYIMFYICS---------FKTAVAEAFVDWLWRKT 361
Query: 345 -----PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGG----DINP 395
P + R S+V Y+AS L A F++ + + ++ W +Y N+ +
Sbjct: 362 SDPNVPSIIRQSSVVYIASLLVAATFVTTGLVKVVQFKISKWIHDYINMQDHSNYIEDEN 421
Query: 396 KAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSE 455
K H VFYS C+A+ ++ R D + L + L ++ LNPLK C P +
Sbjct: 422 KEHSVFYSVCEALFLIITKRHNDYPDSKKYMLYLQELDLAKIITCKLNPLKACHPEIAHS 481
Query: 456 FLQQSKAARL---FTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKS 506
F + ++ +L +TV E N L + R G +++F PF+ L++S
Sbjct: 482 FAEITRIYQLAYCYTVIENNTRNQLPLFDTKR--GTTSTVEIFSPFNSYTLQRS 533
>gi|332845342|ref|XP_003315026.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 isoform 2 [Pan troglodytes]
Length = 469
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 109/380 (28%), Positives = 166/380 (43%), Gaps = 56/380 (14%)
Query: 160 HAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAM----GE 215
H AL+ I VP P L+PI+V++ P V K ER ++ + E +A G
Sbjct: 38 HRALQIIARYVPSTPWFLMPILVEKFPFVR-KSER-TLVNASRQGIEDAEETATQTCGGT 95
Query: 216 LVRSTLLMAVVDRLIDLDMEIG---WDDILHDDFSKGIFEMELEDVEEAADDAEQVGDEL 272
L D + + + G D ++H + M L V D V ++
Sbjct: 96 DSTEGLFNMDEDEETEHETKAGPERLDQMVHPVAERLDILMSL--VLSYMKDVCYVDGKV 153
Query: 273 PSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFA 332
+G K L +LI + D L++ T SC ++F MFY C+ F
Sbjct: 154 DNGK--TKDLYRDLI-NIFDKLLLPTHA---SCH-----VQFFMFYLCS---------FK 193
Query: 333 TMLADVFVSGLY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLE 384
A+ F+ L+ P + R +A +Y+ SFL+RA+F+ + S L LV+W
Sbjct: 194 LGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLLVNWLHI 253
Query: 385 YCNILGGDINPKA------HRVFYSGCQAIMYVLCFRMRSIM--DIPRLKSQLLLMPLET 436
Y N D KA H FYS CQA+ Y FR + ++ ++ L + E
Sbjct: 254 YLN--NQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLKEGLQYLQSLNFER 311
Query: 437 VLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER----- 491
++ LNPLK+CLPSVV+ F + +L N+ + R+ G +
Sbjct: 312 IVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQTCT 371
Query: 492 --LDMFFPFDPCLLKKSDRF 509
LD FFPFDPC+LK+S +F
Sbjct: 372 NPLDTFFPFDPCVLKRSKKF 391
>gi|194382578|dbj|BAG64459.1| unnamed protein product [Homo sapiens]
Length = 469
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 111/381 (29%), Positives = 166/381 (43%), Gaps = 58/381 (15%)
Query: 160 HAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAM----GE 215
H AL+ I VP P L+PI+V++ P V K ER ++ + E +A G
Sbjct: 38 HRALQIIARYVPSTPWFLMPILVEKFPFVR-KSER-TLVNASRQGIEDAEETATQTCGGT 95
Query: 216 LVRSTLLMAVVDRLIDLDMEIG---WDDILHDDFSKGIFEMELEDVEEAADDAEQVGDEL 272
L D + + + G D ++H + M L V D V ++
Sbjct: 96 DSTEGLFNMDEDEETEHETKAGPERLDQMVHPVAERLDILMSL--VLSYMKDVCYVDGKV 153
Query: 273 PSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFA 332
+G K L +LI + D L++ T SC ++F MFY C+ F
Sbjct: 154 DNGK--TKDLYRDLI-NIFDKLLLPTHA---SCH-----VQFFMFYLCS---------FK 193
Query: 333 TMLADVFVSGLY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLE 384
A+ F+ L+ P + R +A +Y+ SFL+RA+F+ + S L LV+W
Sbjct: 194 LGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLLVNWLHI 253
Query: 385 YCNILGGDINPKA------HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP---LE 435
Y N D KA H FYS CQA+ Y FR + ++ LK L + E
Sbjct: 254 YLN--NQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLS-GNLKEGLQYLQSLNFE 310
Query: 436 TVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER---- 491
++ LNPLK+CLPSVV+ F + +L N+ + R+ G +
Sbjct: 311 RIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQIC 370
Query: 492 ---LDMFFPFDPCLLKKSDRF 509
LD FFPFDPC+LK+S +F
Sbjct: 371 TNPLDTFFPFDPCVLKRSKKF 391
>gi|115396742|ref|XP_001214010.1| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Aspergillus terreus NIH2624]
gi|114193579|gb|EAU35279.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 686
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 113/487 (23%), Positives = 200/487 (41%), Gaps = 117/487 (24%)
Query: 113 SLAASNGKYVDSCLTMLVSNFTP--------PSYFLDKLKEPHGLERKHQVLSRVHAALK 164
+LAA+ ++ S L MLV + P Y + ++ E V +RVH AL+
Sbjct: 185 NLAAAQSSHLSSVLKMLVQHLGALPRGTGKVPGYPIVQIPE---------VYTRVHTALR 235
Query: 165 SIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMA 224
+ L+P + L PI+ P + K + Y N L++ A +++ +L
Sbjct: 236 HVMQLIPSSSGALSPILSLNFPF---DTDSAKANIAYTRNLLQV--VAYAPELQADILAL 290
Query: 225 VVDRLIDLDMEIGWD-DILHDDFSKGIFE---------------------MELEDVEEAA 262
+ ++L+ +D++I D + + D+ + + + + + V+E A
Sbjct: 291 ITEKLVKIDVQIQVDLEDIEDETGEDVLQDVSPEATMLAEDEDDEDDASVLSDDSVDEEA 350
Query: 263 DDAEQVGDEL------------------PSGSLSRKSLSGNLIAELLDSLMVLTFEHLES 304
+ + V D + SGS S K + +L+ ++++ T+
Sbjct: 351 ERIKTVKDNILKLDGMLDSLFEYYSPPFTSGSPSDKENALDLLLSHFQTIILPTYR---- 406
Query: 305 CEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRAR 364
R +F++F+ DP +FAT ++ P + R SA +YLASF++R
Sbjct: 407 ----SRHSQFLLFHFSQSDPVLVD-QFATACVELMFKKNQPAIMRQSAAAYLASFVARGA 461
Query: 365 FLSPCFIVSLLKRLVDWCLEYCNILGGDINP-------KAHRVFYSGCQAIMYVLCFRMR 417
+S +++ + D + N L D P + + FYS QA++Y+ CFR R
Sbjct: 462 HIS----SEVVRDVFDLLGTHLNNLRMDYEPTCAGPDLRRYGPFYSTAQALLYIFCFRWR 517
Query: 418 SIM----------DIPRLKSQLLLMP------LETVLKHDLNPLKVCLPSVVSEFLQQSK 461
+ + L+ + + P L+ + LNPLKVC P++VSEF + S+
Sbjct: 518 DLTTAAADGDSPEQVDELEPEDIAFPPQVKEVLQQAVHSKLNPLKVCAPAIVSEFARMSQ 577
Query: 462 AARLFTVSETFVFNDLLESELSRA--------FGGLER-----------LDMFFPFDPCL 502
V N L R+ F +ER LD +FPFDP
Sbjct: 578 HLNFMYVFSILETNKRLRVSGYRSLAALADPRFSHVERETRAGDDLAYQLDAYFPFDPYQ 637
Query: 503 LKKSDRF 509
L +S R+
Sbjct: 638 LPRSRRW 644
>gi|384486478|gb|EIE78658.1| hypothetical protein RO3G_03362 [Rhizopus delemar RA 99-880]
Length = 501
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 109/453 (24%), Positives = 186/453 (41%), Gaps = 86/453 (18%)
Query: 136 PSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERL 195
P++ + L E + R Q R H AL+ I L+P A L +V+ MP H+R
Sbjct: 5 PNFVGNVLPENPKVTRT-QAYDRYHEALQCIVRLIPTAVNSLFVSLVRYMP-----HKRF 58
Query: 196 KMI--VVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWD-DILHDDFSKGIFE 252
Y++N L + S ++R +L V+D+++ +D +I + D + +D I+
Sbjct: 59 NSAEQAAYVKNILLI--SEYAPVLRKQILGLVIDQMVQIDAQIQIELDEIEEDVEVEIYN 116
Query: 253 MELED----------VEEAADDAEQVGDELPSGSLSRKSLSGNLIA---ELLDSLMVLTF 299
M ++ E+ ++ D S KS + I LD++M L+F
Sbjct: 117 MNFDEDYDSEHSDSEDEDDDIPDDESVDSTSSQVTPDKSDTTAQIKYKIRKLDAMMNLSF 176
Query: 300 EHLESCEGTG--------------------------RLIEFVMFYACALDPENCGLRFAT 333
++ + C + R +F++FY C+L+ F
Sbjct: 177 QYFQKCAQSASADVLHEIFYALVDIFDRAVLKTLKSRYTQFLLFYFCSLNVHEYSDYFLE 236
Query: 334 MLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDI 393
L L P +TR++A +Y++S+++RA+FL I ++ L WC Y + +
Sbjct: 237 HLLQHITDPLRPNVTRVAAAAYISSYVARAKFLDSSTIQRVVLALSTWCDNYVDTHESSV 296
Query: 394 NP---KAHRVFYSGCQAIMYVLCFRMRSIM-------------DIPRLKSQLLLMP---- 433
H VFYS QA MY+ CF+ R ++ D+ + + L P
Sbjct: 297 QSLDCTKHDVFYSVVQATMYIFCFKWRDLVIDNDLEIEEDMEDDMYSEEHRHLTRPEHGF 356
Query: 434 --------------LETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFN-DLL 478
L ++ NPLK+C P+VV +F + S++ V N D+
Sbjct: 357 GSGASRTWCFGLRNLPRLVMSKFNPLKICSPAVVRQFAKLSRSTHFMYVYPVLEKNRDIF 416
Query: 479 ESELSRAFGGLERLDMFFPFDPCLLKKSDRFAN 511
L + L+ + FFPFDP L S F +
Sbjct: 417 VPGLGSS-NLLQTVQTFFPFDPYKLDGSKIFVD 448
>gi|380026803|ref|XP_003697131.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Apis florea]
Length = 559
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 109/462 (23%), Positives = 196/462 (42%), Gaps = 58/462 (12%)
Query: 84 HESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKL 143
H+ + ++ + N D+ A K I L Y + + LV F P +
Sbjct: 90 HKVFVETLLQIKWTNRSSDMTSAYKAFIEDLICMQIHYAKNVIDNLVEQFKPDENDNIEW 149
Query: 144 KEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMP-TVHNKHERLKMIVVYM 202
K E Q L+ +H L+ I ++VP++ LL + R P VH H VY+
Sbjct: 150 KNGECREEDIQKLNHIHDILQKILEVVPMSSKVLLQSLRARFPYIVHETHTH----EVYV 205
Query: 203 ENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEI-------GWDDILHD--------DFS 247
+++ A +RS +L +++RL+ LD+ I +D++ D D
Sbjct: 206 YALIQIIEYAPQ--LRSDILSLIINRLMVLDVNIPRLEIDNEEEDLMDDSSECDSTLDTE 263
Query: 248 KGIFEMELEDVEEAADDAEQ--VGDELPSGSLSRKSLSGNLIA-ELLDSL---MVLTFEH 301
I E + + E+ A + V EL + ++ E L SL ++ FE
Sbjct: 264 NNIEENNITETEKIHPIAHKLDVCMELILKYMHNSCFINKVLQIECLKSLYFDVLRIFET 323
Query: 302 LESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLY--------PPLTRMSAV 353
+ + ++++MFY C+ F + + F+ L+ P + R S+V
Sbjct: 324 VILPTHASQYVQYIMFYICS---------FKAAVVEAFIDWLWRKASDPNEPSIIRQSSV 374
Query: 354 SYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNI------LGGDINPKAHRVFYSGCQA 407
+Y+AS + A F++ + + ++ W Y N+ + G+ K H VFYS CQA
Sbjct: 375 AYIASLVVTATFITTGLVKVVQFKISKWIHNYINMQDHSNYMEGE--NKEHNVFYSICQA 432
Query: 408 IMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARL-- 465
+ ++ R D + L + L ++ LNPLKVC P ++ F + ++ +L
Sbjct: 433 LFLIITKRHNDYPDSRKYMLYLQELDLAKIITCKLNPLKVCHPEIMHNFAEITRIYQLAY 492
Query: 466 -FTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKS 506
+T+ E N L + + G ++ FFPF +L++S
Sbjct: 493 CYTIIENNTRNQLPLFDSKK--GTTSTIENFFPFSFYMLQRS 532
>gi|134055088|emb|CAK43728.1| unnamed protein product [Aspergillus niger]
Length = 691
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 113/468 (24%), Positives = 195/468 (41%), Gaps = 96/468 (20%)
Query: 113 SLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQ------VLSRVHAALKSI 166
+LAA+ G Y+ + L MLV+ +L +L + G + + SRVH AL+ +
Sbjct: 206 NLAAAQGSYLGAVLKMLVN-------YLGELPKDTGKIPGYPSVHVPVLYSRVHLALRHV 258
Query: 167 FDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVV 226
L+P L P++ + P + K + Y N +++ S A ++ +L +
Sbjct: 259 MQLIPSGSGTLSPLLSAQFPFASDS---AKANIAYTRNLIRVISYA--PELQGDILSLIT 313
Query: 227 DRLIDLDMEIGWD-----DILHDDFSKGI--------------------------FEMEL 255
++L+ +D+ I D D + +D +G+ + E
Sbjct: 314 EKLVKIDVHIQVDLEDIEDEVGEDVLQGVSPESVMIEEDDADDDDDNDSVLSDDSVDDES 373
Query: 256 EDVEEAADDA-----------EQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLES 304
+ ++ D+ E GSL K + +L+ ++++ T+ S
Sbjct: 374 KRIKAIRDNILKLDGMIDTMFEYYAPPFTLGSLDDKENAFDLLMSHFQNIILPTYRSRHS 433
Query: 305 CEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRAR 364
+F++F+ P RFA M ++ + P + R SA +YLASF++R
Sbjct: 434 --------QFLLFHFSQSSPILVD-RFAAMCTELIFNKTQPAIMRQSAAAYLASFVARGA 484
Query: 365 FLSPCFIVSLLKRLVDWCLEYCNILGGDI-----NPKAHRV--FYSGCQAIMYVLCFRMR 417
+S +++ + D Y N L D P R FYS QA++Y+ CFR R
Sbjct: 485 HISG----EVVRDVFDLLGTYLNSLRLDYEATCRGPDLRRYGPFYSTAQALLYIFCFRWR 540
Query: 418 SIM------DIP----RLKSQLLLMP------LETVLKHDLNPLKVCLPSVVSEFLQQSK 461
+ D P L+ + ++ P L + LNPLKVC P++VS+F + S+
Sbjct: 541 DLTTAALEGDTPDQVDELEPEDIMFPPSVKEVLHQAIHSKLNPLKVCSPAIVSQFARMSQ 600
Query: 462 AARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
L V N L E+ +LD +FPFDP L +S R+
Sbjct: 601 HFNLMYVFSILETNKRLRREIRAGDDLGYQLDAYFPFDPYQLPRSRRW 648
>gi|195051354|ref|XP_001993077.1| GH13629 [Drosophila grimshawi]
gi|193900136|gb|EDV99002.1| GH13629 [Drosophila grimshawi]
Length = 617
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 111/221 (50%), Gaps = 40/221 (18%)
Query: 312 IEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLT--------RMSAVSYLASFLSRA 363
++FV+F+AC++ P + ++F+SGL+ + R +AVSY+ASFL+RA
Sbjct: 342 VQFVIFHACSIRP---------LYTEIFLSGLWKKVQNPNVSSVKRHAAVSYIASFLARA 392
Query: 364 RFLSPCFIVSLLKRLVDWCLEYCN----ILGGDINPKAHRVFYSGCQAIMYVLCFRMRSI 419
RF I LK L +W Y N + + KA+ VFYS CQA+ Y++ FR R +
Sbjct: 393 RFAPLSTITYYLKELSNWANTYINDSDEFSSKNCSLKANMVFYSVCQAMFYLIAFRARDL 452
Query: 420 MDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARL---FTVSE------ 470
P+ + L + L + NPL+ CLP V + F ++ +L TV E
Sbjct: 453 TIHPKNLTLLSTLQLSRLAMCHFNPLRYCLPPVATAFAGVARTHQLAYCHTVLERNARRK 512
Query: 471 --TFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
TF +D L E E L+ FFPFDP +L S++F
Sbjct: 513 LATFYGHDKLMPE--------EILETFFPFDPYILPLSNKF 545
>gi|320168695|gb|EFW45594.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
Length = 942
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 114/254 (44%), Gaps = 40/254 (15%)
Query: 289 ELLDSLMVLTFEHLESCE---------------------------GTGRLIEFVMFYACA 321
+ +D +M L FE++++C R ++F++F C+
Sbjct: 507 QKMDGMMHLLFEYIDTCRLAVSGDLIVYELFTILLRNFEHRILPTHRSRFVQFLLFRICS 566
Query: 322 LDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDW 381
DP L +L V G + + R SA SY+ASF++RA++L + L+ +W
Sbjct: 567 FDPRLAELFLGFILQKALVEGGHTAI-RQSAASYMASFVARAKYLPLPMVCKCLEVSCNW 625
Query: 382 CLEYCNILGGD------INPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLE 435
L+Y + +N H VF+ CQA MY C+R ++ + + + + +
Sbjct: 626 LLQYIEVHEHKVASAELVNVAQHSVFFYTCQAAMYTFCYRHAELLALENGIAFIQRLCFQ 685
Query: 436 TVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMF 495
++ NPLKV LP VV EF + ++A L +++++ L+ F
Sbjct: 686 RIVGCRFNPLKVVLPYVVKEFAKITRAYELVYC------HNIIDRNKKIVLPASSVLEAF 739
Query: 496 FPFDPCLLKKSDRF 509
FPFDP L++S R+
Sbjct: 740 FPFDPYSLRRSKRY 753
>gi|48734880|gb|AAH71868.1| RRN3 protein [Homo sapiens]
Length = 430
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 105/221 (47%), Gaps = 34/221 (15%)
Query: 312 IEFVMFYACALDPENCGLRFATMLADVFVSGLY--------PPLTRMSAVSYLASFLSRA 363
++F MFY C+ F A+ F+ L+ P + R +A +Y+ SFL+RA
Sbjct: 143 VQFFMFYLCS---------FKLGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARA 193
Query: 364 RFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA------HRVFYSGCQAIMYVLCFRMR 417
+F+ + S L LV+W Y N D KA H FYS CQA+ Y FR +
Sbjct: 194 KFIPLITVKSCLDLLVNWLHIYLN--NQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHK 251
Query: 418 SIM--DIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFN 475
++ ++ L + E ++ LNPLK+CLPSVV+ F + +L N
Sbjct: 252 QLLSGNLKEGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERN 311
Query: 476 DLLESELSRAFGGLER-------LDMFFPFDPCLLKKSDRF 509
+ + R+ G + LD FFPFDPC+LK+S +F
Sbjct: 312 NRQMLPVIRSTAGGDSVQICTNPLDTFFPFDPCVLKRSKKF 352
>gi|261196500|ref|XP_002624653.1| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Ajellomyces dermatitidis SLH14081]
gi|239595898|gb|EEQ78479.1| ribosomal DNA transcription factor Rrn3 [Ajellomyces dermatitidis
SLH14081]
Length = 748
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 135/587 (22%), Positives = 234/587 (39%), Gaps = 129/587 (21%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGR-LDPDNRALLE----TSLK----ALSGAVSYI 79
VR A+ GD++ Y+++ + + L+ D + + TSL+ L VS +
Sbjct: 131 VRRAIQRHLMGDSEAYDRVKEIFTADPKELEDDGSPVYDLPSPTSLRNHLLGLFSNVSAL 190
Query: 80 DISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYF 139
D S L+ ++ G D + + +LAA+ G Y++S L +LV
Sbjct: 191 DGSC-SGLVHAVLGSEWLGRDEGYVKLFVRFLGTLAAARGTYLNSVLRVLVHGLRQVGPR 249
Query: 140 LDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIV 199
+ KL + + ++ +RVH A++ I L+P L P++ P + K +
Sbjct: 250 VGKLPG-YPVVYPSEIYARVHMAIRYIIQLIPAGSGALSPLIASSFPY---DTDTAKAHI 305
Query: 200 VYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIG---------------------- 237
VY N +K+ A +RS +L V ++L+ +D++
Sbjct: 306 VYTRNIIKIIDYA--PELRSDILALVTEKLVKIDVQFQVDLEDADEDIDDDNPVAMSSPE 363
Query: 238 -------WDDILHDDFSKGIFEMELEDVEEAADDAEQVGDELPS---------------- 274
+DD D + + +L D+E A A+Q D
Sbjct: 364 AIALGDEYDDEDSDTETIASEDDDLSDIE--AQRAKQRVDTKQKIDFMIDILFEYYSVPF 421
Query: 275 --GSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFA 332
G++ K + +L+ ++++ T+ R +F++F+ P RFA
Sbjct: 422 NYGTVDEKETANDLLLSHFQTIILPTYR--------SRHTQFLLFHYSQSSPIFID-RFA 472
Query: 333 TMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSL-------LKRLVDWCLEY 385
T + S P + R A +YLASF++R +S + + LK L +
Sbjct: 473 TTCVQIIFSKSQPTIIRQYAAAYLASFVARGAHVSSEVVRDVFDLLGTHLKNLQNEYEPT 532
Query: 386 CNILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP------------ 433
C G D+ K + FYS QA++Y+ CFR R + L++ + + P
Sbjct: 533 CR--GPDL--KRYGPFYSTAQALLYIFCFRWRDLT-TAALEADITITPASSDWLDNLDLD 587
Query: 434 -----------LETVLKHDLNPLKVCLPSVVSEFLQQSKA---ARLFTVSET------FV 473
L + LNPLK+C P++VSEF + + L+++ ET
Sbjct: 588 DARFPPQIKDVLHPAINSKLNPLKICSPAIVSEFARLTHHLGFMYLYSLIETNKRVRISS 647
Query: 474 FNDLLESELSRAFGGLER-----------LDMFFPFDPCLLKKSDRF 509
F L + FG +ER LD +FPFDP L +S R+
Sbjct: 648 FRSLTALAMESRFGHVERETKADDDMGPQLDAYFPFDPYHLPRSRRW 694
>gi|239609472|gb|EEQ86459.1| ribosomal DNA transcription factor Rrn3 [Ajellomyces dermatitidis
ER-3]
Length = 746
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 135/587 (22%), Positives = 234/587 (39%), Gaps = 129/587 (21%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGR-LDPDNRALLE----TSLK----ALSGAVSYI 79
VR A+ GD++ Y+++ + + L+ D + + TSL+ L VS +
Sbjct: 129 VRRAIQRHLMGDSEAYDRVKEIFTADPKELEDDGSPVYDLPSPTSLRNHLLGLFSNVSAL 188
Query: 80 DISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYF 139
D S L+ ++ G D + + +LAA+ G Y++S L +LV
Sbjct: 189 DGSC-SGLVHAVLGSEWLGRDEGYVKLFVRFLGTLAAARGTYLNSVLRVLVHGLRQVGPR 247
Query: 140 LDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIV 199
+ KL + + ++ +RVH A++ I L+P L P++ P + K +
Sbjct: 248 VGKLPG-YPVVYPSEIYARVHMAIRYIIQLIPAGSGALSPLIASSFPY---DTDTAKAHI 303
Query: 200 VYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIG---------------------- 237
VY N +K+ A +RS +L V ++L+ +D++
Sbjct: 304 VYTRNIIKIIDYA--PELRSDILALVTEKLVKIDVQFQVDLEDADEDIDDDNPIAMSSPE 361
Query: 238 -------WDDILHDDFSKGIFEMELEDVEEAADDAEQVGDELPS---------------- 274
+DD D + + +L D+E A A+Q D
Sbjct: 362 AIALGDEYDDEDSDTETIASEDDDLSDIE--AQRAKQRVDTKQKIDFMIDILFEYYSVPF 419
Query: 275 --GSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFA 332
G++ K + +L+ ++++ T+ R +F++F+ P RFA
Sbjct: 420 NYGTVDEKETANDLLLSHFQTIILPTYR--------SRHTQFLLFHYSQSSPIFID-RFA 470
Query: 333 TMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSL-------LKRLVDWCLEY 385
T + S P + R A +YLASF++R +S + + LK L +
Sbjct: 471 TTCVQIIFSKSQPTIIRQYAAAYLASFVARGAHVSSEVVRDVFDLLGTHLKNLQNEYEPT 530
Query: 386 CNILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP------------ 433
C G D+ K + FYS QA++Y+ CFR R + L++ + + P
Sbjct: 531 CR--GPDL--KRYGPFYSTAQALLYIFCFRWRDLT-TAALEADITITPASSDWLDNLDLD 585
Query: 434 -----------LETVLKHDLNPLKVCLPSVVSEFLQQSKA---ARLFTVSET------FV 473
L + LNPLK+C P++VSEF + + L+++ ET
Sbjct: 586 DARFPPQIKDVLHPAINSKLNPLKICSPAIVSEFARLTHHLGFMYLYSLIETNKRVRISS 645
Query: 474 FNDLLESELSRAFGGLER-----------LDMFFPFDPCLLKKSDRF 509
F L + FG +ER LD +FPFDP L +S R+
Sbjct: 646 FRSLTALAMESRFGHVERETKADDDMGPQLDAYFPFDPYHLPRSRRW 692
>gi|327350290|gb|EGE79147.1| ribosomal DNA transcription factor Rrn3 [Ajellomyces dermatitidis
ATCC 18188]
Length = 762
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 135/587 (22%), Positives = 233/587 (39%), Gaps = 129/587 (21%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGR-LDPDNRALLE----TSLK----ALSGAVSYI 79
VR A+ GD++ Y+++ + + L+ D + + TSL+ L VS +
Sbjct: 147 VRRAIQRHLMGDSEAYDRVKEIFTADPKELEDDGSPVYDLPSPTSLRNHLLGLFSNVSAL 206
Query: 80 DISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYF 139
D S L+ ++ G D + + +LAA+ G Y++S L +LV
Sbjct: 207 DGSC-SGLVHAVLGSEWLGRDEGYVKLFVRFLGTLAAARGTYLNSVLRVLVHGLRQVGPR 265
Query: 140 LDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIV 199
+ KL + + ++ +RVH A++ I L+P L P++ P + K +
Sbjct: 266 VGKLPG-YPVVYPSEIYARVHMAIRYIIQLIPAGSGALSPLIASSFPY---DTDTAKAHI 321
Query: 200 VYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIG---------------------- 237
VY N +K+ A +RS +L V ++L+ +D++
Sbjct: 322 VYTRNIIKIIDYA--PELRSDILALVTEKLVKIDVQFQVDLEDADEDIDDDNPIAMSSPE 379
Query: 238 -------WDDILHDDFSKGIFEMELEDVEEAADDAEQVGDELPS---------------- 274
+DD D + + +L D+E A A+Q D
Sbjct: 380 AIALGDEYDDEDSDTETIASEDDDLSDIE--AQRAKQRVDTKQKIDFMIDILFEYYSVPF 437
Query: 275 --GSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFA 332
G+ K + +L+ ++++ T+ R +F++F+ P RFA
Sbjct: 438 NYGTADEKETANDLLLSHFQTIILPTYR--------SRHTQFLLFHYSQSSPIFID-RFA 488
Query: 333 TMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSL-------LKRLVDWCLEY 385
T + S P + R A +YLASF++R +S + + LK L +
Sbjct: 489 TTCVQIIFSKSQPTIIRQYAAAYLASFVARGAHVSSEVVRDVFDLLGTHLKNLQNEYEPT 548
Query: 386 CNILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP------------ 433
C G D+ K + FYS QA++Y+ CFR R + L++ + + P
Sbjct: 549 CR--GPDL--KRYGPFYSTAQALLYIFCFRWRDLT-TAALEADITITPASSDWLDNLDLD 603
Query: 434 -----------LETVLKHDLNPLKVCLPSVVSEFLQQSKA---ARLFTVSET------FV 473
L + LNPLK+C P++VSEF + + L+++ ET
Sbjct: 604 DARFPPQIKDVLHPAINSKLNPLKICSPAIVSEFARLTHHLGFMYLYSLIETNKRVRISS 663
Query: 474 FNDLLESELSRAFGGLER-----------LDMFFPFDPCLLKKSDRF 509
F L + FG +ER LD +FPFDP L +S R+
Sbjct: 664 FRSLTALAMESRFGHVERETKADDDMGPQLDAYFPFDPYHLPRSRRW 710
>gi|119575137|gb|EAW54750.1| hCG1786665, isoform CRA_a [Homo sapiens]
Length = 366
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 105/221 (47%), Gaps = 34/221 (15%)
Query: 312 IEFVMFYACALDPENCGLRFATMLADVFVSGLY--------PPLTRMSAVSYLASFLSRA 363
++F MFY C+ F A+ F+ L+ P + R +A +Y+ SFL+RA
Sbjct: 79 VQFFMFYLCS---------FKLGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARA 129
Query: 364 RFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA------HRVFYSGCQAIMYVLCFRMR 417
+F+ + S L LV+W Y N D KA H FYS CQA+ Y FR +
Sbjct: 130 KFIPLITVKSCLDLLVNWLHIYLN--NQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHK 187
Query: 418 SIM--DIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFN 475
++ ++ L + E ++ LNPLK+CLPSVV+ F + +L N
Sbjct: 188 QLLSGNLKEGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERN 247
Query: 476 DLLESELSRAFGGLER-------LDMFFPFDPCLLKKSDRF 509
+ + R+ G + LD FFPFDPC+LK+S +F
Sbjct: 248 NRQMLPVIRSTAGGDSVQICTNPLDTFFPFDPCVLKRSKKF 288
>gi|393241009|gb|EJD48533.1| RNA polymerase I-specific transcription initiation factor RRN3
[Auricularia delicata TFB-10046 SS5]
Length = 719
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 126/594 (21%), Positives = 230/594 (38%), Gaps = 119/594 (20%)
Query: 21 SDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRA-LLETSLKALSGAVSYI 79
+L LV+ V AL G+ + Y++LV + D L L ALS VS +
Sbjct: 78 KNLYLVF-VNNALEQKARGNAEPYDELVGQFTMKSIEDGATTTHQLRQWLNALSHVVSQL 136
Query: 80 DISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYF 139
SH +L+ ++ + + D ++ K I L ++ +Y+ + L+ V T S
Sbjct: 137 GRSH-AALVDAVVALPWFTMDEGLVKTYKNFIGMLVSARPEYLRTVLSRTVQCLTYQSGL 195
Query: 140 LDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIV 199
+ + + R+H+ L+S+ +L+P P+ L P++VQ P H + RL +
Sbjct: 196 RPRGDRDEIPLTRRAMFERLHSLLQSLLELIPTLPSTLQPLLVQHFP--HKRQNRLSHLT 253
Query: 200 VYMENTLKLESSAMGELVRSTLLMAVVDRLI--DLDMEIGWDDILH-------------D 244
Y+ N L + + V ++ ++DR I D+++++ +++ D
Sbjct: 254 -YIRNILHI--TDYCPEVAEDIIATIIDRAIQIDVEIQVEMEELEAEGAGPDAGEIFTLD 310
Query: 245 DFSKGIFEMELED------------VEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLD 292
F + E E + E + +AE + ++ R + LD
Sbjct: 311 PFENVVGENEPRSDSDDDEGDIDDALSELSSEAEDLDNDPAKLEEERDLGHIQEMVTKLD 370
Query: 293 SLMVLTFEHLESCEG------------------------------------TGRLIEFVM 316
+++ L FEH + R +FV+
Sbjct: 371 AILKLVFEHFNRLQAEILSSSLPETDTLLDARRAQFLSLLTIFDTTILRTFKSRYTQFVV 430
Query: 317 FYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLK 376
F+ +LD E L ++ PP+ R +A SY+ASF+SRA F+ + +
Sbjct: 431 FWYASLDAEFADLFLGMLVGRALRDAGQPPVARAAAASYIASFVSRALFIGRAAARKVTE 490
Query: 377 RLVDWCLEYCNILGGD-INPKAHRVFYSGCQAIMYVLCFRMRSI--------------MD 421
+ ++ ++ D + + H VFY+ QA+ + CFR R + M+
Sbjct: 491 LFCTFLAQHLALVEEDPLAARQHMVFYAAAQAVFLIFCFRWRDLLLEDEEGDGEVDDEME 550
Query: 422 IP---RLKSQLLLMP----LETVLKHDLNPLKVCLPSVVSEFLQQSKAARLF-------- 466
I L + +P ++ V+ +NPLKVC +VV++F + ++
Sbjct: 551 IAMGASLSRKRRWLPELDVMQRVVSSPMNPLKVCSQNVVNQFARVAQHTDFLYCYPIMDG 610
Query: 467 --------TVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRFANA 512
V +++ D G E + FFPFDP L S F
Sbjct: 611 TATPRGEVGVGPAYLWKD----------GVQEEVHSFFPFDPYALPLSASFVQG 654
>gi|444727169|gb|ELW67674.1| RNA polymerase I-specific transcription initiation factor RRN3
[Tupaia chinensis]
Length = 388
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 107/224 (47%), Gaps = 40/224 (17%)
Query: 312 IEFVMFYACALDPENCGLRFATMLADVFVSGLY--------PPLTRMSAVSYLASFLSRA 363
++F MFY C+ F A+ F+ L+ P + R +A +Y+ SFL+RA
Sbjct: 93 VQFFMFYLCS---------FKLGFAEAFLEHLWKKLQDPNNPAIIRQAAGNYIGSFLARA 143
Query: 364 RFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA------HRVFYSGCQAIMYVLCFRMR 417
+F+ + S L LV+W Y N D KA H FYS CQA+ Y FR +
Sbjct: 144 KFIPLITVKSCLDLLVNWLHMYLN--NQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHK 201
Query: 418 SIMDIPRLKSQLLLMP---LETVLKHDLNPLKVCLPSVVSEFLQQSKAARL---FTVSET 471
++ LK L + E ++ LNPLK+CLPSVV+ F + +L +T+ E
Sbjct: 202 QLLS-GNLKEGLRYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIER 260
Query: 472 FVFNDLLESELSRAFGG------LERLDMFFPFDPCLLKKSDRF 509
N + + GG LD FFPFDPC+LK+S +F
Sbjct: 261 --NNRQMLPVIRNTAGGDSVQTCTNPLDTFFPFDPCVLKRSKKF 302
>gi|326477740|gb|EGE01750.1| hypothetical protein TEQG_00795 [Trichophyton equinum CBS 127.97]
Length = 717
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 134/534 (25%), Positives = 216/534 (40%), Gaps = 112/534 (20%)
Query: 64 LLETSLKALSGAVSYIDISHHESLLVSIFGMSMW-NYDPDVMDALKGLIISLAASNGKYV 122
LL+ L L G VS +D S S LV S W D + + +L A+ G Y+
Sbjct: 156 LLKNHLMGLLGNVSSLDGSC--SGLVHAMLKSEWVGRDTAYVRLFAQFLATLCAARGGYL 213
Query: 123 DSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVV 182
+S L MLV+ L + ++ ++ RVH A++SI +VP L PI+
Sbjct: 214 NSVLKMLVNGLQQVDPRCGNLPDYDPVDSS-EIYHRVHYAIRSIAQVVPACSVTLSPILS 272
Query: 183 QRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDME--IGWDD 240
P + + +K +VY N +K+ S + EL RS +L + ++L+ +D + + +D
Sbjct: 273 SSFP---HDSDPVKSHLVYTRNLIKI-ISYLPEL-RSDILALITEKLVKIDAQNQVNMED 327
Query: 241 ILHDDFSKGIFEMELEDVEEAADDAE-------------QVGDELPSGSLSR-KSLSGNL 286
+ D + ++ D A D A + G++ L R KS+ +
Sbjct: 328 LDEDT------QQDIMDALNATDPATLEKDEDDDLDEDSEAGEDEADPDLQRIKSVKACM 381
Query: 287 IAELLDSLMVLTFEH---------LESCEGT-----------------GRLIEFVMFYAC 320
+ +DS++ + FE+ LE E R +FV+F+
Sbjct: 382 LK--VDSMVDILFEYYNYPFISGSLEDQEQVLDFLLAHFQSIILPSYRSRHAQFVLFHFA 439
Query: 321 ALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVD 380
P RFAT ++ +S P + R A +YLASF++R +S I + L
Sbjct: 440 QASPIFVD-RFATTCIEIILSKSQPVIIRQYAAAYLASFVARGAHVSGDVIRDVFSLLGS 498
Query: 381 WCLEYCNILGGDI-NPKAHRV--FYSGCQAIMYVLCFRMRSIM-----------DIPRLK 426
L + D P R FYS QA+ Y+ CFR + + +P L
Sbjct: 499 HVLSLLSSYEADCRGPDLRRYGPFYSTAQALFYIFCFRWKDLTIAAVEAEAEGNSLPHLN 558
Query: 427 ------SQLLLMPLETVLKHDLNPLKVCLPSVVSEF---------------LQQSKAARL 465
SQ + L + LNPLKVC P +V+EF L+ +K R+
Sbjct: 559 VDEVSFSQEMTNMLHRAIYSKLNPLKVCSPGIVAEFAKITHYFGLLYLYPKLESNKRIRI 618
Query: 466 FTVSETFVFNDLLESELSRAFGGLER-----------LDMFFPFDPCLLKKSDR 508
+ F + + +G +ER LD +FPFDP + + R
Sbjct: 619 HS------FRGMSSMAMDTMYGTIERETRADDNLAIQLDDYFPFDPYKMPRGAR 666
>gi|354481228|ref|XP_003502804.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like, partial [Cricetulus griseus]
Length = 325
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 104/222 (46%), Gaps = 36/222 (16%)
Query: 312 IEFVMFYACALDPENCGLRFATMLADVFVSGLY--------PPLTRMSAVSYLASFLSRA 363
++F MF+ C+ F A+ F+ L+ P + R +A +Y+ SFL+RA
Sbjct: 31 VQFFMFFLCS---------FKLGFAEAFLEHLWKKLQDPNNPAIIRQAAANYIGSFLARA 81
Query: 364 RFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA------HRVFYSGCQAIMYVLCFRMR 417
+F+ + S L LV+W Y N D KA H FYS CQA+ Y FR +
Sbjct: 82 KFIPLITVKSCLDLLVNWLHMYLN--NQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHK 139
Query: 418 SIMDIPRLKSQLLLMP---LETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVF 474
I+ LK L + E V+ LNPLK+CLPSVV+ F + +L
Sbjct: 140 QILS-GNLKEGLRYLQSLNFERVVLSQLNPLKICLPSVVNFFAAVTNKYQLVFCYTIMER 198
Query: 475 NDLLESELSRAFGGLER-------LDMFFPFDPCLLKKSDRF 509
N + R+ G + LD FFPFDPC+LK+S +F
Sbjct: 199 NSRQMLPVIRSTAGGDSVQTCTNPLDTFFPFDPCVLKRSKKF 240
>gi|326473274|gb|EGD97283.1| hypothetical protein TESG_04694 [Trichophyton tonsurans CBS 112818]
Length = 717
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 134/534 (25%), Positives = 216/534 (40%), Gaps = 112/534 (20%)
Query: 64 LLETSLKALSGAVSYIDISHHESLLVSIFGMSMW-NYDPDVMDALKGLIISLAASNGKYV 122
LL+ L L G VS +D S S LV S W D + + +L A+ G Y+
Sbjct: 156 LLKNHLMGLLGNVSSLDGSC--SGLVHAMLKSEWVGRDTAYVRLFAQFLATLCAARGGYL 213
Query: 123 DSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVV 182
+S L MLV+ L + ++ ++ RVH A++SI +VP L PI+
Sbjct: 214 NSVLKMLVNGLQQVDPRCGNLPDYDPVDSS-EIYHRVHYAIRSIAQVVPACSVTLSPILS 272
Query: 183 QRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDME--IGWDD 240
P + + +K +VY N +K+ S + EL RS +L + ++L+ +D + + +D
Sbjct: 273 SSFP---HDSDPVKSHLVYTRNLIKI-ISYLPEL-RSDILALITEKLVKIDAQNQVNMED 327
Query: 241 ILHDDFSKGIFEMELEDVEEAADDAE-------------QVGDELPSGSLSR-KSLSGNL 286
+ D + ++ D A D A + G++ L R KS+ +
Sbjct: 328 LDEDT------QQDIMDALNATDPATLEKDEDDDLDEDSEAGEDEADPDLQRIKSVKACM 381
Query: 287 IAELLDSLMVLTFEH---------LESCEGT-----------------GRLIEFVMFYAC 320
+ +DS++ + FE+ LE E R +FV+F+
Sbjct: 382 LK--VDSMVDILFEYYNYPFISGSLEDQEQVLDFLLAHFQSIILPSYRSRHAQFVLFHFA 439
Query: 321 ALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVD 380
P RFAT ++ +S P + R A +YLASF++R +S I + L
Sbjct: 440 QASPIFVD-RFATTCIEIILSKSQPVIIRQYAAAYLASFVARGAHVSGDVIRDVFSLLGS 498
Query: 381 WCLEYCNILGGDI-NPKAHRV--FYSGCQAIMYVLCFRMRSIM-----------DIPRLK 426
L + D P R FYS QA+ Y+ CFR + + +P L
Sbjct: 499 HVLSLLSSYEADCRGPDLRRYGPFYSTAQALFYIFCFRWKDLTIAAVEAEAEGNSLPHLN 558
Query: 427 ------SQLLLMPLETVLKHDLNPLKVCLPSVVSEF---------------LQQSKAARL 465
SQ + L + LNPLKVC P +V+EF L+ +K R+
Sbjct: 559 VDEVSFSQEMTNMLHRAIYSKLNPLKVCSPDIVAEFAKITHYFGLLYLYPKLESNKRIRI 618
Query: 466 FTVSETFVFNDLLESELSRAFGGLER-----------LDMFFPFDPCLLKKSDR 508
+ F + + +G +ER LD +FPFDP + + R
Sbjct: 619 HS------FRGMSSMAMDTMYGTIERETRADDNLAIQLDDYFPFDPYKMPRGAR 666
>gi|302666146|ref|XP_003024675.1| hypothetical protein TRV_01138 [Trichophyton verrucosum HKI 0517]
gi|291188742|gb|EFE44064.1| hypothetical protein TRV_01138 [Trichophyton verrucosum HKI 0517]
Length = 717
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 135/531 (25%), Positives = 215/531 (40%), Gaps = 108/531 (20%)
Query: 65 LETSLKALSGAVSYIDISHHESLLVSIFGMSMW-NYDPDVMDALKGLIISLAASNGKYVD 123
L+ L L G VS +D S S LV S W D + + +L A+ G Y++
Sbjct: 157 LKNHLMGLLGNVSSLDGSC--SGLVHAMLKSEWVGRDTAYVKLFAQFLATLCAARGGYLN 214
Query: 124 SCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQ 183
S L MLV+ L + ++ ++ RVH A++SI +VP L PI+
Sbjct: 215 SVLKMLVNGLQQVDPRCGNLPDYDPVDSS-EIYHRVHYAIRSIAQVVPACSVTLSPILSS 273
Query: 184 RMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDME--IGWDDI 241
P + + +K + Y N +K+ S + EL RS +L + ++L+ +D + + +D+
Sbjct: 274 SFP---HDSDPVKSHLAYTRNLIKM-ISYLPEL-RSDILALITEKLVKIDAQNQVNMEDL 328
Query: 242 LHDDFSKGIFEMELEDVEEAADDAE-------------QVGDELPSGSLSR-KSLSG--- 284
D + ++ D AAD A +VG++ L R KS+
Sbjct: 329 DEDT------QQDIMDALNAADPATFEKDDDDDLDEESEVGEDDADPDLQRIKSVKACML 382
Query: 285 --NLIAELL--------------DSLMVLTF--EHLESC---EGTGRLIEFVMFYACALD 323
+L+ ++L D VL F H +S R +FV+F+
Sbjct: 383 KVDLMVDILFEYYNYPFISGSLEDQEQVLDFLLAHFQSIILPSYRSRHAQFVLFHFAQAS 442
Query: 324 PENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCL 383
P RFAT ++ +S P + R A +YLASF++R +S I + L L
Sbjct: 443 PIFVD-RFATTCIEIILSKSQPVIIRQYAAAYLASFVARGAHVSGDVIRDVFSLLGSHVL 501
Query: 384 EYCNILGGDI-NPKAHRV--FYSGCQAIMYVLCFRMRSIM-----------DIPRLK--- 426
+ D P R FYS QA+ Y+ CFR + + +P L
Sbjct: 502 SLLSSYEADCRGPDLRRYGPFYSTAQALFYIFCFRWKDLTIAAVEAEAEGNSLPHLNVDE 561
Query: 427 ---SQLLLMPLETVLKHDLNPLKVCLPSVVSEF---------------LQQSKAARLFTV 468
SQ + L + LNPLKVC P +V+EF L+ +K R+ +
Sbjct: 562 VSFSQEMTNMLHRTIYSKLNPLKVCSPGIVAEFAKITHYFGLLYLYPKLESNKRIRIHS- 620
Query: 469 SETFVFNDLLESELSRAFGGLER-----------LDMFFPFDPCLLKKSDR 508
F + + +G +ER LD +FPFDP + + R
Sbjct: 621 -----FRGMGSMAMDTMYGTIERETRADDNLAFQLDDYFPFDPYKMPRGAR 666
>gi|358366879|dbj|GAA83499.1| RNA polymerase I specific transcription initiation factor RRN3
superfamily [Aspergillus kawachii IFO 4308]
Length = 710
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 115/487 (23%), Positives = 200/487 (41%), Gaps = 115/487 (23%)
Query: 113 SLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQ------VLSRVHAALKSI 166
+LAA+ G Y+ + L MLV+ FL +L + G + + SRVH AL+ +
Sbjct: 206 NLAAAQGSYLGAVLKMLVN-------FLGELPKDTGKIPGYPSVQVPVLYSRVHLALRHV 258
Query: 167 FDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVV 226
L+P L P++ + P + K + Y N +++ S A ++ +L +
Sbjct: 259 MQLIPSGSGTLSPLLSAQFPFASDS---AKANIAYTRNLIRVISYA--PELQGDILSLIT 313
Query: 227 DRLIDLDMEIGWD-----DILHDDFSKGIFEMEL-------------------EDVEEAA 262
++L+ +D+ I D D + +D +G+ + + V++ +
Sbjct: 314 EKLVKIDVHIQVDLEDIEDEVGEDVLQGVSPESVMIEEDDAEDDDDNDSVLSDDSVDDES 373
Query: 263 DDAEQVGDEL---------------PS---GSLSRKSLSGNLIAELLDSLMVLTFEHLES 304
+ + D + P GSL K + +L+ ++++ T+ S
Sbjct: 374 KRIKAIRDNILKLDGMIDTMFEYYAPPFTLGSLDDKENAFDLLMSHFQNIILPTYRSRHS 433
Query: 305 CEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRAR 364
+F++F+ P RFA M ++ + P + R SA +YLASF++R
Sbjct: 434 --------QFLLFHFSQSSPILVD-RFAAMCTELIFNKTQPAIMRQSAAAYLASFVARGA 484
Query: 365 FLSPCFIVSLLKRLVDWCLEYCNILGGDI-----NPKAHRV--FYSGCQAIMYVLCFRMR 417
+S +++ + D Y N L D P R FYS QA++Y+ CFR R
Sbjct: 485 HISG----EVVRDVFDLLGTYLNSLRLDYEATCRGPDLRRYGPFYSTAQALLYIFCFRWR 540
Query: 418 SIM------DIP----RLKSQLLLMP------LETVLKHDLNPLKVCLPSVVSEFLQQSK 461
+ D P L+ + ++ P L + LNPLKVC P++VS+F + S+
Sbjct: 541 DLTTAALEGDTPDQVDELEPEDIMFPPSVKEVLHQAIHSKLNPLKVCSPAIVSQFARMSQ 600
Query: 462 AARLFTVSETFVFNDLLESELSRAFGGLE-------------------RLDMFFPFDPCL 502
L V N L R+ G + +LD +FPFDP
Sbjct: 601 HFNLMYVFSILETNKRLRVSSYRSIGAMADPRFSQVEREIRAGDDLGYQLDAYFPFDPYQ 660
Query: 503 LKKSDRF 509
L +S R+
Sbjct: 661 LPRSRRW 667
>gi|330915448|ref|XP_003297038.1| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Pyrenophora teres f. teres 0-1]
gi|311330536|gb|EFQ94887.1| hypothetical protein PTT_07309 [Pyrenophora teres f. teres 0-1]
Length = 679
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 142/573 (24%), Positives = 237/573 (41%), Gaps = 96/573 (16%)
Query: 15 MEDVNISDLELV-YHVREALTSVQSGDNDNYNQLVAVMH-LSGRLDPDNRALLETSLKAL 72
+ D N LELV VR A+ +G+ Y+ L A+ L LL+ + AL
Sbjct: 60 LADPNEKSLELVGEEVRRAIEKHAAGERAAYDGLKALFRELPTSTSAPLSHLLQKYVIAL 119
Query: 73 SGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSN 132
+ +D S+ + L+ ++ + D + + + + L + Y+ + L MLV
Sbjct: 120 TNNTPLLD-SNCKGLVHAVIDCKWIARNDDFVRSFQIFLRRLLSVQPGYMSTILQMLVDM 178
Query: 133 F-TPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNK 191
F PS + +P ++R H + +RVH LKSI P+A + L PI+ P
Sbjct: 179 FLGAPSPNARQTDDP-PIQRVH-IQARVHQTLKSILRYSPMASSFLSPIISNTFPI---S 233
Query: 192 HERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIF 251
HE K+ V ++ N + A +R +L V D+L +D ++ + DD +
Sbjct: 234 HESAKLHVEFIRNIFTVTEYA--PEIRGEILALVTDKLCKIDAQMQ---MDMDDMDDDLE 288
Query: 252 EMELEDV---EEAADDAEQVGDELPSGSLSRKSLSGNLIAEL---LDSLMVLTFEHLESC 305
E + D EE D G + GS+ + I ++ LD +M L F + S
Sbjct: 289 ERLVNDAMYDEEDDDHGSDAGSDTSEGSMDPEEQRLKDIKDMMLKLDIVMDLQFSYYASI 348
Query: 306 --------------------------EGTGRLIEFVMFYACALDPENCGLRFATMLADVF 339
R +FV+F+ + P L F + +
Sbjct: 349 FDKRDVKESDRMYDTLLAQFQSIIIPTYRSRHAQFVLFHFSQMSPHFMEL-FVEACSRLA 407
Query: 340 VSGLYPPLTRMSAVSYLASFLSRARFLSPCFIV--------SLLKRLVDWCLEYCNILGG 391
+ PPL R SA +YLAS+++R + P F+V L+RL C G
Sbjct: 408 IDSNRPPLLRASACAYLASYIARGAHV-PGFVVRDVFGTLCEQLERLRATHEPKCT--GP 464
Query: 392 DINPKAHRVFYSGCQAIMYVLCFRMRSIMDI--PRLKSQLLLMPLE----------TVLK 439
D+ + + +Y+ QA++Y CFR R ++ +L + +M E +L+
Sbjct: 465 DL--RRYGTYYAIAQALLYAFCFRWRDLIVTTDSKLPTDADIMYHEGDFSWHGKTLEILR 522
Query: 440 HD----LNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDL-------LESELSRAFGG 488
+ LNPL++C P +V +F + +K R FT +T V + + S GG
Sbjct: 523 RNIFCKLNPLRICAPDIVKQFGRIAKHLR-FTYVDTLVETNKRVRLSCSVASSYLTGIGG 581
Query: 489 LER------------LDMFFPFDPCLLKKSDRF 509
E +D +FPFDP +L +S R+
Sbjct: 582 RETALTGKKGEEAFLMDAYFPFDPYVLPRSKRW 614
>gi|195385170|ref|XP_002051281.1| GJ13145 [Drosophila virilis]
gi|194147738|gb|EDW63436.1| GJ13145 [Drosophila virilis]
Length = 617
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 106/219 (48%), Gaps = 36/219 (16%)
Query: 312 IEFVMFYACALDPENCGLRFATMLADVFVSGLY--------PPLTRMSAVSYLASFLSRA 363
++FV+FYAC++ P ++F+S L+ + R +AVSY+ASFL+RA
Sbjct: 342 VQFVIFYACSIRP---------AYTEIFLSALWHKVQNPNVSSIIRHAAVSYIASFLARA 392
Query: 364 RFLSPCFIVSLLKRLVDWCLEYCN----ILGGDINPKAHRVFYSGCQAIMYVLCFRMRSI 419
+F+ I LK L +W Y N + + KA+ VF+S CQAI Y++ FR R +
Sbjct: 393 KFVPLGTITYYLKELSNWANNYINDSDEFSSKNCSLKANMVFFSVCQAIFYLIAFRARDL 452
Query: 420 MDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLE 479
+ + L + L + NPL+ CLP V + F ++ +L + +LE
Sbjct: 453 TINQKNLALLNTLQLSRLAMCHFNPLRYCLPPVATAFAGVTRTHQLAYC------HTVLE 506
Query: 480 SELSRAFGGL---------ERLDMFFPFDPCLLKKSDRF 509
R + E L+ FFPFDP +L S++F
Sbjct: 507 RNARRKLATIYGHDKLMPEETLETFFPFDPYILPLSNKF 545
>gi|328777141|ref|XP_001122533.2| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Apis mellifera]
Length = 559
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 105/460 (22%), Positives = 193/460 (41%), Gaps = 54/460 (11%)
Query: 84 HESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKL 143
H+ + ++ + N D+ A K I L Y + + LV F P +
Sbjct: 90 HKVFVETLLQIKWTNRSSDMTSAYKAFIEDLICMQIHYAKNVIDNLVEQFKPDENDNIEW 149
Query: 144 KEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMP-TVHNKHERLKMIVVYM 202
K E Q L+ +H L+ I ++VP++ LL + R P +H H VY+
Sbjct: 150 KNGECREEDIQRLNHIHDILQKILEVVPMSSKVLLQSLRARFPYIIHETHTH----EVYV 205
Query: 203 ENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEI-------GWDDILHD--------DFS 247
+++ A +RS +L +++RL+ LD+ I +D++ D D
Sbjct: 206 YALIQIIEYAPQ--LRSDILSLIINRLMVLDVNIPRLELDNEEEDLMDDSSECDSTLDTE 263
Query: 248 KGIFEMELEDVEEAADDAEQ--VGDELPSGSLSRKSLSGNLIA-ELLDSL---MVLTFEH 301
I E + + E+ A + V EL + ++ E L SL ++ FE
Sbjct: 264 NNIEENNITETEKIHPIAHKLDVCMELILKYMHNSCFINKVLQIECLKSLYFDVLRIFET 323
Query: 302 LESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLY--------PPLTRMSAV 353
+ + ++++MFY C+ F + + F+ L+ P + R S++
Sbjct: 324 VILPTHASQYVQYIMFYICS---------FKAAVMEAFIDWLWRKASNPNEPSIIRQSSI 374
Query: 354 SYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGG----DINPKAHRVFYSGCQAIM 409
+Y+AS + A F++ + ++ ++ W Y N+ + K H VFYS CQA+
Sbjct: 375 AYIASLVVTATFITTGLVKAVQFKISKWIHNYINMQDHSNYMEDENKEHNVFYSICQALF 434
Query: 410 YVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARL---F 466
++ R D + L + L ++ LNPLK C P ++ F + ++ +L +
Sbjct: 435 LIITKRHNDYPDSRKYMLYLQELDLAKIITCKLNPLKACHPEIMHNFAEITRIYQLAYCY 494
Query: 467 TVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKS 506
T+ E N L + + G ++ FFPF L++S
Sbjct: 495 TIIENNTRNQLPLFDSKK--GTTSTIENFFPFSFYTLQRS 532
>gi|195356327|ref|XP_002044628.1| GM18796 [Drosophila sechellia]
gi|194133175|gb|EDW54691.1| GM18796 [Drosophila sechellia]
Length = 615
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 110/465 (23%), Positives = 196/465 (42%), Gaps = 82/465 (17%)
Query: 102 DVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKH--QVLSRV 159
++++A I L ++ +Y+ ++ L+ ++ P +D+ HG +H L +
Sbjct: 112 EIIEAYTEFCIELMVTHNRYLPIGVSKLIVHWIPGD--MDESDWVHGCPSEHARNELKPI 169
Query: 160 HAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRS 219
H L I VP+A ++ + + P + + Y+ N L L +
Sbjct: 170 HKVLDRILTAVPMAFDIIIDAISAKFPYFKKPYH---VTAGYLYNVLWL--LEYKPIFEE 224
Query: 220 TLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEA--ADDAEQVGDELPSG-S 276
+ V+ +++ LD+ D+I E+E+ D EE AD ++ D S
Sbjct: 225 LVFQLVLQKILLLDVNAPKDEI----------ELEMNDEEEKVEADTLFEIDDVFAENVS 274
Query: 277 LSRKSLSGNLIAELLDSLMVLTFEHLE--------SCEGTGRL----------------- 311
S KS+S + + + LD + L ++ + S E R
Sbjct: 275 KSEKSVS-HPVGKTLDVSLFLLYKFFDGKCRLNENSSEQQRRTANRLFKMLLYLFDEVLL 333
Query: 312 -------IEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLT--------RMSAVSYL 356
++F++FYA +L ++ ++ F+ L+ + R +AV Y+
Sbjct: 334 PSHNTHHVQFILFYATSL---------RSVYSEAFLDSLWTKVQNPNVSAVIRHAAVGYM 384
Query: 357 ASFLSRARFLSPCFIVSLLKRLVDWCLEY---CNILGGDINPKAHRVFYSGCQAIMYVLC 413
ASFLSRARFL ++ LK L W Y + + + KA+ VFYS CQA+ Y++
Sbjct: 385 ASFLSRARFLPLSTVIFYLKELTKWAHAYIDDSDAYKQNCSLKANLVFYSVCQAVFYLIA 444
Query: 414 FRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFV 473
FR R + + L + L + LNPL+ CL V + F ++ +L
Sbjct: 445 FRARDLTASSKDLLFLQSLQLSRLAMCHLNPLRYCLAPVATAFAGVTRTYQLAYCHTVLE 504
Query: 474 FNDLLESELSRAFGGL-----ERLDMFFPFDPCLLKKSDRFANAT 513
N +L+ +G E L+ FFPFDP +LK S ++ ++
Sbjct: 505 RN--ARRKLATVYGHEKCMPDETLESFFPFDPYVLKLSKKYIDSN 547
>gi|121703217|ref|XP_001269873.1| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Aspergillus clavatus NRRL 1]
gi|119398016|gb|EAW08447.1| RNA polymerase I specific transcription initiation factor RRN3
superfamily [Aspergillus clavatus NRRL 1]
Length = 712
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 117/480 (24%), Positives = 196/480 (40%), Gaps = 102/480 (21%)
Query: 113 SLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKH--QVLSRVHAALKSIFDLV 170
+LAA+ G Y+ S L ML ++ KL G H ++ SR+H AL+ + L+
Sbjct: 208 NLAAAQGSYLGSVLKMLANHLGELPKGTGKLP---GYAPVHAAEIYSRIHTALRHVMQLI 264
Query: 171 PLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLI 230
P L PI+ + P + K + Y N LK+ S A +++ +L + ++L+
Sbjct: 265 PSGSGTLSPILSMQFPF---DTDSAKANIAYTRNLLKVISYA--PELQADILALITEKLV 319
Query: 231 DLDMEIGWD----------DILHDDFSKGIF-----EMELEDVEEAADDA---------- 265
+D++I D D+LH + + E ++ A+D++
Sbjct: 320 KIDVQIQIDMEDIEDEVGEDVLHAVSPEATMFEDEDDDEDDNASVASDESIDAESRRVKI 379
Query: 266 ----------------EQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTG 309
E SG+L K + +L+ S+++ T+
Sbjct: 380 LKDNILKLDGMIDSLFEYYAPPFRSGTLDDKENALDLLLSHFQSIILPTYR--------S 431
Query: 310 RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPC 369
R +F++F+ P RFA + + + P + R SA +YLASF++R +S
Sbjct: 432 RHSQFLLFHFSQSSPILVD-RFAATCVQLIFNKMQPGILRQSAAAYLASFVARGAHISGE 490
Query: 370 FIVSLL----KRLVDWCLEY-CNILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIM---- 420
+ + L + L+Y G D+ + + FYS QA++Y+ CFR R +
Sbjct: 491 VVRDVFDLLGTHLNNLRLDYEATCRGPDL--RRYGPFYSTAQALLYIFCFRWRDLTTAAV 548
Query: 421 --DIP----RLKSQLLLMP------LETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTV 468
D P L+ + + P L + LNPLKVC P++VSEF + ++ V
Sbjct: 549 EGDTPEQIDELEPEEIAFPPSVKEVLHQAIHSKLNPLKVCSPAIVSEFARMAQHLNFMYV 608
Query: 469 SETFVFNDLLESELSR--------AFGGLER-----------LDMFFPFDPCLLKKSDRF 509
N L R F +ER LD +FPFDP L +S R+
Sbjct: 609 FSILETNKRLRVSSFRNISAMADPRFSQIERETRAGDDLGYQLDAYFPFDPYQLPRSRRW 668
>gi|194391086|dbj|BAG60661.1| unnamed protein product [Homo sapiens]
Length = 486
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 120/533 (22%), Positives = 212/533 (39%), Gaps = 111/533 (20%)
Query: 3 VELPIDHAESHEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLV-AVMHLSGRLDPDN 61
LP D A S S ++++ R ++++++ +ND +N + G
Sbjct: 8 TRLPGDAAASP-------SAVKMLGASRTGISNMRALENDFFNSPPRKTVQFGG------ 54
Query: 62 RALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKY 121
+ E LK +G + ++ ++ L I + N V++ + +L ++ +
Sbjct: 55 -TVTEVLLKYKTGETNDFELLKNQLLDPDIKRLPWLNRSQTVVEEYLAFLGNLVSAQTVF 113
Query: 122 VDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIV 181
+ CL+M+ S+F PP RV + LP
Sbjct: 114 LRPCLSMIASHFVPP---------------------RVIIKEGDVDVSDSDDEDDNLPAN 152
Query: 182 VQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDI 241
++ N + ++ I Y+ N L++ S +R +L ++++L+ LD+
Sbjct: 153 FDTSQSLAN-NSKICTIECYVHNLLRI--SVYFPTLRHEILELIIEKLLKLDVNAS---- 205
Query: 242 LHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEH 301
+ +DAE+ ++ G+ S + L ++ SL++
Sbjct: 206 -----------------RQGIEDAEETANQTCGGTDSTEGL-----CNMVSSLLMKVEMK 243
Query: 302 LESCEGTGRLIEFVMFYACAL---------DPENCGLRFATMLADVFVSGLYPPLTRMSA 352
+G +L+ + +A A DP N P + R +A
Sbjct: 244 FIIIKGWKQLVLLIFGFAEAFLEPLWKKLQDPSN------------------PAIIRQAA 285
Query: 353 VSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA------HRVFYSGCQ 406
+Y+ SFL+RA+F+ + S L LV+W Y N D KA H FYS CQ
Sbjct: 286 GNYIGSFLARAKFIPLITVKSCLDLLVNWLHIYLN--NQDSGTKAFCDVALHGPFYSACQ 343
Query: 407 AIMYVLCFRMRSIMDIPRLKSQLLLMP---LETVLKHDLNPLKVCLPSVVSEFLQQSKAA 463
A+ Y FR + ++ LK L + E ++ LNPLK+CLPSVV+ F +
Sbjct: 344 AVFYTFVFRHKQLLS-GNLKEGLQYLQSLNFEWIVMSQLNPLKICLPSVVNFFAAITNKY 402
Query: 464 RLFTVSETFVFNDLLESELSRAFGGLER-------LDMFFPFDPCLLKKSDRF 509
+L N+ + R+ G + LD FFPFDPC+LK+S +F
Sbjct: 403 QLVFCYTIIERNNRQMLPVIRSTTGGDSVQTCTNPLDTFFPFDPCVLKRSKKF 455
>gi|238483529|ref|XP_002373003.1| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Aspergillus flavus NRRL3357]
gi|317139921|ref|XP_001817850.2| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Aspergillus oryzae RIB40]
gi|220701053|gb|EED57391.1| RNA polymerase I specific transcription initiation factor RRN3
[Aspergillus flavus NRRL3357]
Length = 701
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 121/482 (25%), Positives = 212/482 (43%), Gaps = 102/482 (21%)
Query: 113 SLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKH------QVLSRVHAALKSI 166
+LAA+ G Y+ L MLV+ +L +L + G + ++ +RVH A++ I
Sbjct: 202 NLAAAQGSYLGPVLKMLVT-------YLGELPKGTGKLPGYAPVLVPEIYTRVHMAIRHI 254
Query: 167 FDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVV 226
L+P L P++ + P + K + Y +N +++ A +++ +L +
Sbjct: 255 VHLIPSGSGSLSPVLSMQFPF---DTDSPKANIAYTQNLIRVIGYA--PELQADILALLT 309
Query: 227 DRLIDLDMEIG----------WDDILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGS 276
++L+ +D++I +++LH I E +D + A+ ++ D + + S
Sbjct: 310 EKLVKIDVQIQVDMDDLDDEEEEEVLHAVSPGAIVFGEDDDDDNASVASD---DSIDAES 366
Query: 277 LSRKSLSGNLIA--ELLDSLMVL---TFEH--LESCEGT-----------------GRLI 312
K++ N++ ++DSL TF L+ E T R
Sbjct: 367 QRLKTIKDNVLKLDGMIDSLFAYYAPTFASGTLDDKENTLDLLLSHFQSIILPTYRSRHS 426
Query: 313 EFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIV 372
+F++F+ P+ RF T ++ + + P +TR SA +YLASF++R +S +
Sbjct: 427 QFLLFHFSQSSPDLVD-RFTTACIEIVFNKMQPAITRQSAAAYLASFVARGAHISGEIVR 485
Query: 373 SL-------LKRLVDWCLEYCNILGGDINPKAHRVFYSGCQAIMYVLCFRMR-------- 417
+ L+ L D C G D+ + + FYS QA++Y+ CFR R
Sbjct: 486 DVFGLLGGHLRDLRDLYEPSCR--GPDL--RRYGPFYSTAQALLYIFCFRWRDLTTAATE 541
Query: 418 --SIMDIPRLKSQLLLMP------LETVLKHDLNPLKVCLPSVVSEFLQQSKAARL---F 466
SI + L+ + + P L + LNPLKVC P++VSEF + S+ L F
Sbjct: 542 GDSIEQVDELEIEDITFPPMVKEALHQTIYSKLNPLKVCSPAIVSEFARMSQHLNLMYVF 601
Query: 467 TVSET------FVFNDL---------LESELSRAFGGLE-RLDMFFPFDPCLLKKSDRFA 510
++ ET F +L L +RA L +LD +FPFDP L +S +
Sbjct: 602 SILETNKRIRMTSFRNLAALADPRFSLVERETRAGDDLGYQLDAYFPFDPYQLPRSRHWV 661
Query: 511 NA 512
A
Sbjct: 662 EA 663
>gi|302500630|ref|XP_003012308.1| hypothetical protein ARB_01267 [Arthroderma benhamiae CBS 112371]
gi|291175866|gb|EFE31668.1| hypothetical protein ARB_01267 [Arthroderma benhamiae CBS 112371]
Length = 717
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 135/531 (25%), Positives = 215/531 (40%), Gaps = 108/531 (20%)
Query: 65 LETSLKALSGAVSYIDISHHESLLVSIFGMSMW-NYDPDVMDALKGLIISLAASNGKYVD 123
L+ L L G VS +D S S LV S W D + + +L A+ G Y++
Sbjct: 157 LKNHLMGLLGNVSSLDGSC--SGLVHAMLKSEWVGRDTTYVKLFAQFLATLCAARGGYLN 214
Query: 124 SCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQ 183
S L MLV+ L + ++ ++ RVH A++SI +VP L PI+
Sbjct: 215 SVLKMLVNGLQQVDPRCGNLPDYDPVDSS-EIYHRVHYAIRSIAQVVPACSVTLSPILSS 273
Query: 184 RMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDME--IGWDDI 241
P + + +K + Y N +K+ S + EL RS +L + ++L+ +D + + +D+
Sbjct: 274 SFP---HDSDPVKSHLAYTRNLIKM-ISYLPEL-RSDILALITEKLVKIDAQNQVNMEDL 328
Query: 242 LHDDFSKGIFEMELEDVEEAADDAE-------------QVGDELPSGSLSR-KSLSG--- 284
D + ++ D AAD A +VG++ L R KS+
Sbjct: 329 DEDT------QQDIMDALNAADPATFEKDDDDDLDEESEVGEDDVDPDLQRIKSVKACML 382
Query: 285 --NLIAELL--------------DSLMVLTF--EHLESC---EGTGRLIEFVMFYACALD 323
+L+ ++L D VL F H +S R +FV+F+
Sbjct: 383 KVDLMVDILFEYYNYPFISGSLEDQEQVLDFLLAHFQSIILPSYRSRHAQFVLFHFAQAS 442
Query: 324 PENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCL 383
P RFAT ++ +S P + R A +YLASF++R +S I + L L
Sbjct: 443 PIFVD-RFATTCIEIILSKSQPVIIRQYAAAYLASFVARGAHVSGDVIRDVFSLLGSHVL 501
Query: 384 EYCNILGGDI-NPKAHRV--FYSGCQAIMYVLCFRMRSIM-----------DIPRLK--- 426
+ D P R FYS QA+ Y+ CFR + + +P L
Sbjct: 502 SLLSSYETDCRGPDLRRYGPFYSTAQALFYIFCFRWKDLTIAAVEAEAEGNSLPHLNVDE 561
Query: 427 ---SQLLLMPLETVLKHDLNPLKVCLPSVVSEF---------------LQQSKAARLFTV 468
SQ + L + LNPLKVC P +V+EF L+ +K R+ +
Sbjct: 562 VSFSQEMTNMLHRTIYSKLNPLKVCSPGIVAEFAKITHYFGLLYLYPKLESNKRIRIHS- 620
Query: 469 SETFVFNDLLESELSRAFGGLER-----------LDMFFPFDPCLLKKSDR 508
F + + +G +ER LD +FPFDP + + R
Sbjct: 621 -----FRGMGSMAMDTMYGTIERETRADDNLAFQLDDYFPFDPYKMPRGAR 666
>gi|83765705|dbj|BAE55848.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391870996|gb|EIT80165.1| RNA polymerase I transcription factor [Aspergillus oryzae 3.042]
Length = 706
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 116/482 (24%), Positives = 204/482 (42%), Gaps = 102/482 (21%)
Query: 113 SLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKH------QVLSRVHAALKSI 166
+LAA+ G Y+ L MLV+ +L +L + G + ++ +RVH A++ I
Sbjct: 180 NLAAAQGSYLGPVLKMLVT-------YLGELPKGTGKLPGYAPVLVPEIYTRVHMAIRHI 232
Query: 167 FDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVV 226
L+P L P++ + P + K + Y +N +++ A +++ +L +
Sbjct: 233 VHLIPSGSGSLSPVLSMQFPF---DTDSPKANIAYTQNLIRVIGYA--PELQADILALLT 287
Query: 227 DRLIDLDMEIG----------WDDILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGS 276
++L+ +D++I +++LH I E +D + A+ ++ D + + S
Sbjct: 288 EKLVKIDVQIQVDMDDLDDEEEEEVLHAVSPGAIVFGEDDDDDNASVASD---DSIDAES 344
Query: 277 LSRKSLSGNLIA--ELLDSLMVL---TFEH--LESCEGT-----------------GRLI 312
K++ N++ ++DSL TF L+ E T R
Sbjct: 345 QRLKTIKDNVLKLDGMIDSLFAYYAPTFASGTLDDKENTLDLLLSHFQSIILPTYRSRHS 404
Query: 313 EFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIV 372
+F++F+ P+ RF T ++ + + P +TR SA +YLASF++R +S +
Sbjct: 405 QFLLFHFSQSSPDLVD-RFTTACIEIVFNKMQPAITRQSAAAYLASFVARGAHISGEIVR 463
Query: 373 SL-------LKRLVDWCLEYCNILGGDINPKAHRVFYSGCQAIMYVLCFRMR-------- 417
+ L+ L D C G D+ + + FYS QA++Y+ CFR R
Sbjct: 464 DVFGLLGGHLRDLRDLYEPSCR--GPDL--RRYGPFYSTAQALLYIFCFRWRDLTTAATE 519
Query: 418 --SIMDIPRLKSQLLLMP------LETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVS 469
SI + L+ + + P L + LNPLKVC P++VSEF + S+ L V
Sbjct: 520 GDSIEQVDELEIEDITFPPMVKEALHQTIYSKLNPLKVCSPAIVSEFARMSQHLNLMYVF 579
Query: 470 ETFVFNDLLESELSRAFGGLE-------------------RLDMFFPFDPCLLKKSDRFA 510
N + R L +LD +FPFDP L +S +
Sbjct: 580 SILETNKRIRMTSFRNLAALADPRFSLVERETRAGDDLGYQLDAYFPFDPYQLPRSRHWV 639
Query: 511 NA 512
A
Sbjct: 640 EA 641
>gi|350638121|gb|EHA26477.1| hypothetical protein ASPNIDRAFT_172112 [Aspergillus niger ATCC
1015]
Length = 659
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 114/487 (23%), Positives = 197/487 (40%), Gaps = 115/487 (23%)
Query: 113 SLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQ------VLSRVHAALKSI 166
+LAA+ G Y+ + L MLV+ +L +L + G + + SRVH AL+ +
Sbjct: 155 NLAAAQGSYLGAVLKMLVN-------YLGELPKDTGKIPGYPSVHVPVLYSRVHLALRHV 207
Query: 167 FDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVV 226
L+P L P++ + P + K + Y N +++ S A ++ +L +
Sbjct: 208 MQLIPSGSGTLSPLLSAQFPFASDS---AKANIAYTRNLIRVISYA--PELQGDILSLIT 262
Query: 227 DRLIDLDMEIGWD-----DILHDDFSKGI--------------------------FEMEL 255
++L+ +D+ I D D + +D +G+ + E
Sbjct: 263 EKLVKIDVHIQVDLEDIEDEVGEDVLQGVSPESVMIEEDDADDDDDNDSVLSDDSVDDES 322
Query: 256 EDVEEAADDA-----------EQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLES 304
+ ++ D+ E GSL K + +L+ ++++ T+ S
Sbjct: 323 KRIKAIRDNILKLDGMIDTMFEYYAPPFTLGSLDDKENAFDLLMSHFQNIILPTYRSRHS 382
Query: 305 CEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRAR 364
+F++F+ P RFA M ++ + P + R SA +YLASF++R
Sbjct: 383 --------QFLLFHFSQSSPILVD-RFAAMCTELIFNKTQPAIMRQSAAAYLASFVARGA 433
Query: 365 FLSPCFIVSLLKRLVDWCLEYCNILGGDI-----NPKAHRV--FYSGCQAIMYVLCFRMR 417
+S +++ + D Y N L D P R FYS QA++Y+ CFR R
Sbjct: 434 HISG----EVVRDVFDLLGTYLNSLRLDYEATCRGPDLRRYGPFYSTAQALLYIFCFRWR 489
Query: 418 SIM------DIP----RLKSQLLLMP------LETVLKHDLNPLKVCLPSVVSEFLQQSK 461
+ D P L+ + ++ P L + LNPLKVC P++VS+F + S+
Sbjct: 490 DLTTAALEGDTPDQVDELEPEDIMFPPSVKEVLHQAIHSKLNPLKVCSPAIVSQFARMSQ 549
Query: 462 AARLFTVSETFVFNDLLESELSRAFGGLE-------------------RLDMFFPFDPCL 502
L V N L R+ G + +LD +FPFDP
Sbjct: 550 HFNLMYVFSILETNKRLRVSSYRSIGAMADPRFSQVEREIRAGDDLGYQLDAYFPFDPYQ 609
Query: 503 LKKSDRF 509
L +S R+
Sbjct: 610 LPRSRRW 616
>gi|317026109|ref|XP_001388984.2| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Aspergillus niger CBS 513.88]
Length = 710
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 114/487 (23%), Positives = 197/487 (40%), Gaps = 115/487 (23%)
Query: 113 SLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQ------VLSRVHAALKSI 166
+LAA+ G Y+ + L MLV+ +L +L + G + + SRVH AL+ +
Sbjct: 206 NLAAAQGSYLGAVLKMLVN-------YLGELPKDTGKIPGYPSVHVPVLYSRVHLALRHV 258
Query: 167 FDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVV 226
L+P L P++ + P + K + Y N +++ S A ++ +L +
Sbjct: 259 MQLIPSGSGTLSPLLSAQFPFASDS---AKANIAYTRNLIRVISYA--PELQGDILSLIT 313
Query: 227 DRLIDLDMEIGWD-----DILHDDFSKGI--------------------------FEMEL 255
++L+ +D+ I D D + +D +G+ + E
Sbjct: 314 EKLVKIDVHIQVDLEDIEDEVGEDVLQGVSPESVMIEEDDADDDDDNDSVLSDDSVDDES 373
Query: 256 EDVEEAADDA-----------EQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLES 304
+ ++ D+ E GSL K + +L+ ++++ T+ S
Sbjct: 374 KRIKAIRDNILKLDGMIDTMFEYYAPPFTLGSLDDKENAFDLLMSHFQNIILPTYRSRHS 433
Query: 305 CEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRAR 364
+F++F+ P RFA M ++ + P + R SA +YLASF++R
Sbjct: 434 --------QFLLFHFSQSSPILVD-RFAAMCTELIFNKTQPAIMRQSAAAYLASFVARGA 484
Query: 365 FLSPCFIVSLLKRLVDWCLEYCNILGGDI-----NPKAHRV--FYSGCQAIMYVLCFRMR 417
+S +++ + D Y N L D P R FYS QA++Y+ CFR R
Sbjct: 485 HISG----EVVRDVFDLLGTYLNSLRLDYEATCRGPDLRRYGPFYSTAQALLYIFCFRWR 540
Query: 418 SIM------DIP----RLKSQLLLMP------LETVLKHDLNPLKVCLPSVVSEFLQQSK 461
+ D P L+ + ++ P L + LNPLKVC P++VS+F + S+
Sbjct: 541 DLTTAALEGDTPDQVDELEPEDIMFPPSVKEVLHQAIHSKLNPLKVCSPAIVSQFARMSQ 600
Query: 462 AARLFTVSETFVFNDLLESELSRAFGGLE-------------------RLDMFFPFDPCL 502
L V N L R+ G + +LD +FPFDP
Sbjct: 601 HFNLMYVFSILETNKRLRVSSYRSIGAMADPRFSQVEREIRAGDDLGYQLDAYFPFDPYQ 660
Query: 503 LKKSDRF 509
L +S R+
Sbjct: 661 LPRSRRW 667
>gi|169602669|ref|XP_001794756.1| hypothetical protein SNOG_04337 [Phaeosphaeria nodorum SN15]
gi|111066977|gb|EAT88097.1| hypothetical protein SNOG_04337 [Phaeosphaeria nodorum SN15]
Length = 668
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 122/566 (21%), Positives = 230/566 (40%), Gaps = 85/566 (15%)
Query: 15 MEDVNISDLELVYH-VREALTSVQSGDNDNYNQLVAVMHLSGRLD-PDNRALLETSLKAL 72
+ D + LELV+ VR A+ +G+ Y+ + A+ R + ALL+ + AL
Sbjct: 47 LRDEDEKSLELVHEEVRRAMEKHAAGEKAAYDVIKALFREDPRTSGSTSTALLQKYIIAL 106
Query: 73 SGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSN 132
+ V +D + + L+ +I S + + + + SL + ++ + L L
Sbjct: 107 TNHVHLLDFTC-KGLVHAIIDCSWVARHESFVRSYRAFLHSLLSIQSGFMSTVLQSLNGM 165
Query: 133 FTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKH 192
F + ++ +ER ++ SR+H L+SI P+A + L P + P +
Sbjct: 166 FLKMPSVNSRQRDDPPIERV-RLESRIHDCLRSILRHNPMASSFLAPSLASNFPYPDDD- 223
Query: 193 ERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWD-DILHDDFSKGIF 251
K V Y+ N L++ + EL + + V D+L+ +D++I D + L DD + +
Sbjct: 224 --AKTHVQYIRNILRI-AEYCPEL-KGEVFSLVTDKLVKIDVQIQVDMEELEDDIEERLV 279
Query: 252 EMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRL 311
+ + E+ D E V E ++ LD++M L F H ++ R
Sbjct: 280 GDAINEAEDDDSDNESVSSEESLDPEEQRLKDLRQAVSKLDTIMDLLFTHYDNVFAADRF 339
Query: 312 -------------------------IEFVMFYACALDPENCGLRFATMLADVFVSGLYPP 346
+F++F+ + +FA + + P
Sbjct: 340 EADELFESLLSQFASTILPTYRSRHTQFLLFHFSQTSADRTE-QFAGACSHLAFDQNRPH 398
Query: 347 LTRMSAVSYLASFLSRARFLSPCFIVSLLKRL-----VDWCLEYCNILGGDINPKAHRVF 401
+ R++A +YL SF++R + P + ++ L + + + G D+ + + +
Sbjct: 399 ILRVTAAAYLGSFIARGAHVRPDTVRAVFDLLCHHLEIQRAMHESSCKGPDL--RRYGTY 456
Query: 402 YSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHD-------------------- 441
Y+ QA++Y+ CFR R ++ P + + E ++ H+
Sbjct: 457 YAIAQALLYLFCFRWRDLIVTPDMTTPTD----EDIIYHEGDFTWYNSTQDTIRRNIFSK 512
Query: 442 LNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDL------LESELSRAFGGLER---- 491
LNPLK+C P++V++F + + R V N L S GG E
Sbjct: 513 LNPLKICAPTIVAQFARVAHHLRFLYVYPLIETNKRVRLARSLASGYLHGLGGRETALST 572
Query: 492 --------LDMFFPFDPCLLKKSDRF 509
LD +FPFDP +L +S R+
Sbjct: 573 KKGEETFLLDAYFPFDPYVLPRSKRW 598
>gi|383852627|ref|XP_003701828.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Megachile rotundata]
Length = 564
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 119/523 (22%), Positives = 218/523 (41%), Gaps = 76/523 (14%)
Query: 30 REALTSVQSGD-NDNYNQLVAVMHLSGRLDPDNRALLETSLKALSGAVSYIDISHHESLL 88
R + + +SG+ +Y+ L+ V+ S D D L ++K + + H++LL
Sbjct: 40 RTIIYNYESGNGTKDYDDLICVLRDSCIKDSDLVEFL-ANVKQCTSLLG----PAHKTLL 94
Query: 89 VSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHG 148
+I + N +V++A K + +L Y + + LV F P K +
Sbjct: 95 DTILQIKWTNRSMEVINAYKAFLENLICIQTYYAKTVIDNLVELFKPDENDDAKWETGEC 154
Query: 149 LERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTV-HNKHERLKMIVVYMENTLK 207
E Q L+ +H + ++P++ LL + R P + H H VY+ ++
Sbjct: 155 KEETLQRLNHIHDVFRKTLIILPMSSKLLLQSLRGRFPYMAHGTHTH----EVYVYALIQ 210
Query: 208 LESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAADDAEQ 267
+ A +RS +L +++RL+ LD+ I S+ E E + +D
Sbjct: 211 ILEYAPQ--MRSDILSLIINRLVVLDVNIP--------HSEVDDEDEDMIDDNESDSTLG 260
Query: 268 VGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHL-ESC--EGTGRL------------- 311
+ + G ++ + IA LD + L +++ +SC EG R+
Sbjct: 261 NENNIVEGKSRTETDEMHPIAHKLDVCIELILKYMYDSCFTEGVLRIESLRSLYFDLLNI 320
Query: 312 -------------IEFVMFYACALDPENCGLRFATMLADVFVSGLY--------PPLTRM 350
++++MFY C+ F T + + F+ L+ P + R
Sbjct: 321 FETVILPTHASQYVQYIMFYICS---------FKTAVVESFIDWLWRKGTDPNVPSIIRQ 371
Query: 351 SAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILG----GDINPKAHRVFYSGCQ 406
S+VSY+AS ++ A+F+S + ++ ++ W +Y N+ D K H VFY+ CQ
Sbjct: 372 SSVSYIASLVATAKFVSAGLVKAVQFKMSKWIHDYINMQDHLQYADHTRKDHTVFYAVCQ 431
Query: 407 AIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVV---SEFLQQSKAA 463
A+ ++ R D + L + L ++ LNPLK C +V +EF + + A
Sbjct: 432 ALFLIITKRHNDYQDSKKYMLYLQELDLAKIITCKLNPLKSCHSEIVHNFAEFTRMYQLA 491
Query: 464 RLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKS 506
+T+ E N L + ++ FFPF LK+S
Sbjct: 492 YCYTIIENNTRNQLPIYNDDKIVTTT--VENFFPFSIYTLKRS 532
>gi|332375841|gb|AEE63061.1| unknown [Dendroctonus ponderosae]
Length = 605
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 118/535 (22%), Positives = 225/535 (42%), Gaps = 107/535 (20%)
Query: 36 VQSGDNDNYNQLVAVMHLSGRLDPDNRALLETSLKALSGAVSYIDISHHESLLV-SIFGM 94
V S + Y LV ++ + L+ D ALL+ + + +S ++ L V S+ +
Sbjct: 57 VGSNETHEYMNLVCLIRDAELLESDLSALLDEATECISL------LNQDFRLFVESLLSI 110
Query: 95 SMWNYDPDVMDALKGLIISLAASNGKY----VDSCLTMLVSNFTPPSYFLDKLKEPHG-- 148
+ DV+ +G +++L +++ + +D + + + N T P + P G
Sbjct: 111 RWVDRSLDVVKQYQGFLVNLISAHNVHAKFVIDKLVNLFLPNLTDPEW-------PDGEI 163
Query: 149 LERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMP----TVHNKHERLKMIVVYMEN 204
E+ Q+ +H +K + D+VP+ LL + ++ P H + L I++ +
Sbjct: 164 TEKDRQICLNIHVVIKILLDVVPICKDLLLQSITRQYPYYNRPTHTQEYYLHHILMVL-- 221
Query: 205 TLKLESSAMGELVRSTLLMAVVDRLIDLDM----EIGWDDILHDDFSKGIFEMELEDVEE 260
A + + V+ +LI +D+ E+ +++ D+ IF ME
Sbjct: 222 -------AYQPSFKPDIFHLVLVKLIKMDVNAPKEVITQEMMEDE---TIFPME------ 265
Query: 261 AADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLM------VLTFEHLESCEGTGRL--- 311
DDA+ S + +S G + +D L+ LT + E T L
Sbjct: 266 --DDAKSTKTISTSFTNVNRSDLGVALDACMDLLLGYISKECLTQDGSADWEKTKNLYHH 323
Query: 312 -----------------IEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLT------ 348
+FVMF CAL P + + F+S L+ +
Sbjct: 324 LLTAFDKVILPTYNSHHTQFVMFAMCALKPA---------VTEAFLSHLWKKVCNPNVAA 374
Query: 349 --RMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGG----DINPKAHRVFY 402
R +A++Y+AS ++R +F+S + ++++ DW Y G + + + H VFY
Sbjct: 375 VLRQTAITYIASLVARGQFVSLVVLKGTMQQMADWIHSYMKNQDGLECVNSDLRVHSVFY 434
Query: 403 SGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKA 462
S CQA+ Y+L FR + +++ + L + L ++ + LNPL+VC +VV F +
Sbjct: 435 SVCQALFYLLAFRHKDLVESKKNVVFLQSLQLGKMVTNRLNPLRVCHQAVVQSF---AAV 491
Query: 463 ARLFTVSETFVFND---------LLESELSRAFGGLERLDMFFPFDPCLLKKSDR 508
AR + ++ + D + + E L ++PFDP +L +S +
Sbjct: 492 ARKYQLAYCYTVIDHNSRNSMPTIYQDEKGSRIVSDNLLCDYYPFDPYVLVRSGK 546
>gi|425771226|gb|EKV09675.1| RNA polymerase I specific transcription initiation factor RRN3
superfamily [Penicillium digitatum Pd1]
gi|425776779|gb|EKV14983.1| RNA polymerase I specific transcription initiation factor RRN3
superfamily [Penicillium digitatum PHI26]
Length = 692
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 113/472 (23%), Positives = 194/472 (41%), Gaps = 96/472 (20%)
Query: 113 SLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPL 172
+LAA+ G ++ L ML +N L +L + + ++ +RVH A++ + L+P
Sbjct: 201 NLAAAQGVFLGPVLKMLATNLGSIPRGLGRLPG-YAVVSPSEMHARVHMAMRHVLRLIPA 259
Query: 173 APTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDL 232
L PI+ + P + + Y N ++L S A ++S +L ++++L+ +
Sbjct: 260 GSGSLSPILSTQFPF---DSDSASANIAYTRNLIQLISYA--PELQSDILALIIEKLVKV 314
Query: 233 DMEIGWD----------------------------DILHDDFSKGIFEMELEDVEEAADD 264
D+EI D D DD +KG +++D D
Sbjct: 315 DVEIQIDMEDFEEEVGEEILDEVDDEEDDDSSVASDESEDDDTKG--AKKIKDNVLKVDG 372
Query: 265 A-----EQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYA 319
E SG+L + + +L+ ++++ T+ S +F++F+
Sbjct: 373 MIDLLFEYFSPPFTSGTLDDQENALDLLLSHFQTIILPTYRSRHS--------QFLLFHF 424
Query: 320 CALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLV 379
P RFA+ + + L P + R SA +YLASF++R +S +++ +
Sbjct: 425 SQASPVLVD-RFASTFVQLIFNKLQPGILRQSAAAYLASFVARGAHIS----GEVVRDVF 479
Query: 380 DWCLEYCNILGGDI-----NPKAHRV--FYSGCQAIMYVLCFRMRSIM------DIPRL- 425
D L + N L D P R FYS QA++Y+ CFR R + D P
Sbjct: 480 DLLLTHLNSLRMDYEDSCRGPDLRRYGPFYSTAQALLYIFCFRWRDLTTAAVDGDTPDQV 539
Query: 426 ----KSQLLLMP-----LETVLKHDLNPLKVCLPSVVSEF---------------LQQSK 461
Q+ P L + LNPLKVC P++V+EF L+ +K
Sbjct: 540 DGLEPGQIAFPPNMKEFLHKCIYSRLNPLKVCSPAIVAEFARIAHHFQFLYVYPLLETNK 599
Query: 462 AARLFTVSETFVFNDLLESELSRAFGGLE----RLDMFFPFDPCLLKKSDRF 509
R+ +D S + R + +LD +FPFDP L +S R+
Sbjct: 600 RIRVTAFRNLSNLSDPRFSHVGREIRAGDNIGYQLDAYFPFDPYQLPRSRRW 651
>gi|443927023|gb|ELU45560.1| RNA polymerase I-specific transcription initiation factor rrn3
[Rhizoctonia solani AG-1 IA]
Length = 764
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 141/618 (22%), Positives = 245/618 (39%), Gaps = 128/618 (20%)
Query: 11 ESHEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDP--DNRALLETS 68
+S + +D+ D+ L + V+ AL G+++ +++LV + +P + A L +
Sbjct: 60 KSLKRDDLFRKDMYLTF-VKNALRERLKGNSEPFHELVGQFSPAKFGEPTEGSTAQLRSW 118
Query: 69 LKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTM 128
+ ALS VS ++ SH L+ ++ D + +L ++ +Y+ S L+
Sbjct: 119 IAALSHVVSSLERSH-APLVEAVLATPWMTLDDAFAATYTNFVGTLVSARPEYMSSVLSR 177
Query: 129 LVSNFTPPSY-FLDKL--KEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRM 185
+ F SY FL + + L R+ + +RVH L + L+P P L PI+
Sbjct: 178 CIQAFIYQSYGFLGRNFNGDSSPLTRR-IICNRVHNLLSHLLGLIPTLPLMLQPIITSYF 236
Query: 186 PTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEI--------- 236
P H K +L Y+ N L L S + +L +V+R +D+EI
Sbjct: 237 P--HKKLSKLAQ-TTYIRNLLTL--SGYCPALSDAILSLIVERAQQIDVEIQVELEDLDD 291
Query: 237 -----GWDDILHDDFSKGIFEME-LEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAE- 289
G D D F I E + L++ +D E++ D L S L+ + +AE
Sbjct: 292 DNDPEGGDIFNLDGFDSVIGEEDHLQNPVFGDEDEEEILDGLSDISSENGDLAEDDVAEG 351
Query: 290 ------------LLDSLMVLTFEHLESCEG------------------------------ 307
LD+++ L FEHL +
Sbjct: 352 PSNVKHIQDMVSKLDAMLNLVFEHLAAIPSETLSSFPSSSTKQPPIIPVTPERQLEIRHS 411
Query: 308 -----------------TGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRM 350
R +F++F+ +L + + F +L D + P + R+
Sbjct: 412 QLWNLIAIFKRTIVKTHKSRYTQFLLFWYSSLHADFTDV-FLGVLMDRLMDTTLPDMARV 470
Query: 351 SAVSYLASFLSRARFLSPCFIVSLLKRLVDWC------LEYCNILGGDINP--KAHRVFY 402
A SY+ASF+SRA+ + +++ L D+ +E + P + +FY
Sbjct: 471 GAASYVASFISRAKHIDTANARAVIGVLCDYLRDTVDKVEELEARDSNFTPVVSQYALFY 530
Query: 403 SGCQAIMYVLCFRMRSIMDIPRL------KSQLLLMP----LETVLKHDLNPLKVCLPSV 452
+ QA+ + CFR R + + P +S L MP ++ + LNPLK+C +V
Sbjct: 531 AIAQAVFLIYCFRWRELGEDPDELLVEGDESPKLWMPDLLVVQRAIMSALNPLKICAVNV 590
Query: 453 VSEFLQQSKAARL---FTVSETFVFNDLLESELSRAFGGLE------------------R 491
V +F + S + FT+ E+ +DL +E G
Sbjct: 591 VQQFARVSNSTGFVYCFTILESNRRSDLATAETPPPQYGTRLKIDPKHARLMRDPALDAD 650
Query: 492 LDMFFPFDPCLLKKSDRF 509
L+ FFPFDP L S ++
Sbjct: 651 LNAFFPFDPYKLPISHKY 668
>gi|328771118|gb|EGF81158.1| hypothetical protein BATDEDRAFT_1623, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 533
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 106/427 (24%), Positives = 187/427 (43%), Gaps = 91/427 (21%)
Query: 154 QVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAM 213
Q+ R+H AL+ I LVP P+ LL I+ P +K + +++ + Y+++ L++ A
Sbjct: 100 QLFDRIHTALERILHLVPTGPSFLLSILTVNFP---HKTQDIEIQIFYVKSLLRITEYA- 155
Query: 214 GELVRSTLLMAVVDRLIDLDMEIGWDDILHDD-----FSKGIFEMELEDVEEAADDAEQV 268
++R+ ++ +V+ ++ +D+ I + ++ + +F M+ DV +A Q
Sbjct: 156 -PILRNQIISVIVEGVVQVDVAIQIEIEELNEEELEAIQETVFSMDDLDVNSSAASFSQ- 213
Query: 269 GDEL-----------PSGSLSRKSLS----GNLIAEL------LDSLMVLTFE-----HL 302
G E P+G S +S + G ++A++ LD+++ L F+ H+
Sbjct: 214 GSENNLLKKDENYVDPAGYESDESNASDGVGIIVADIKSMVEKLDAMLSLLFQYVTDIHI 273
Query: 303 ESCEGTG---------------------------RLIEFVMFYACALDPENCGLRFATML 335
+S + T R +F++FY + + F
Sbjct: 274 KSMKDTFSESKDITNLFYAFLDIFDRVMIPTHRLRCTQFLLFYMSSFNKT-----FPNDF 328
Query: 336 ADVFVSGLY----PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCN---- 387
+ VS L+ P + R+S+ +YL S+LSRA+++ + + L L + Y +
Sbjct: 329 MGLLVSRLFQVESPLVIRISSAAYLGSYLSRAKYVDISSVRTCLGLLNQFTQSYLDNNES 388
Query: 388 ILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIM------DIPRLKSQL--LLMPLETVLK 439
+G IN + V YS QAI+YV CFR + +M + QL L + VL
Sbjct: 389 SMGPRINVERFGVLYSAVQAILYVFCFRWKELMLTGSEDKVSIHHGQLPPELKDFQRVLM 448
Query: 440 HDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFD 499
PL+VC ++V EF + A + F + S + RLD FFPFD
Sbjct: 449 SRFAPLRVCSETIVQEFAKIMHALDIMYCYPLIGFTSSVSSLQT------NRLDSFFPFD 502
Query: 500 PCLLKKS 506
P L KS
Sbjct: 503 PITLPKS 509
>gi|440635126|gb|ELR05045.1| hypothetical protein GMDG_01616 [Geomyces destructans 20631-21]
Length = 695
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 140/578 (24%), Positives = 236/578 (40%), Gaps = 123/578 (21%)
Query: 29 VREALT--SVQSGDNDNYNQLVAVMHLSGRLDPDNRA---LLETSLKALSGAVSYIDISH 83
VR+AL + GD+ Y+ L V R P +A L+ L AL+ VS +
Sbjct: 93 VRKALDEHNRAGGDDCRYDGLKEVFSTKNR--PQGKAETDLMRAHLLALTNCVSLL--GK 148
Query: 84 HESLLVSIFGMSMW-NYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDK 142
+ S LV S W D + A + +LA++ G YV + L+MLV F+ +
Sbjct: 149 NSSGLVRAVLESEWVGRDEPYVRAYVNFLSNLASAQGAYVGTVLSMLVEKFSTLRISNGR 208
Query: 143 LKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYM 202
L + + R Q+ +RVH ALK + L+P A L PI+ + P E K + Y+
Sbjct: 209 LDDCPIVHRT-QLSARVHTALKYLLRLIPSASGTLAPILAAKFPF---SDESKKAHMAYI 264
Query: 203 ENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAA 262
N +K+ A ++S + + +RL+ +D+++ D L DD + + V+ +
Sbjct: 265 NNLIKIIDYA--PELKSDIFALITERLVKIDVQMQID--LDDDVAAAV-------VQSVS 313
Query: 263 DDAEQVGDELPSGSLSR-----------------KSLSGNL--IAELLDSLMVLTFEHLE 303
+ ++ G++ S K++ N+ + +LD+L L H E
Sbjct: 314 NRSDLTGEDDSEADDSDSDSDASDDSLDDEQNRVKAMHENVEKMDAILDTLFELYTPHFE 373
Query: 304 -----SCEGT-----------------GRLIEFVMFYACALDPENCGLRFATMLADVFVS 341
S T R +F++F+ A E+ FA D+
Sbjct: 374 DPLSSSAISTFDTLLSHFRNIILPTYRSRHTQFLLFH-FAQTSEHLIDTFAGECVDLAFK 432
Query: 342 GLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNIL---------GGD 392
P + + SA +YLASF+SR + P +++ + D+ +++ G D
Sbjct: 433 SGRPAVLKQSAAAYLASFVSRGANVLP----HVVRDVFDYIGTNLDLIRSENELSCRGPD 488
Query: 393 INPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP----------------LET 436
+ + + FY+ QA++Y+ CFR R ++ P + + L+
Sbjct: 489 L--QRYSTFYATTQALLYIFCFRWRDLVVSPSAEEGEIDEEDFVGRDLEWRAGVKELLDR 546
Query: 437 VLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLE-SELSRAFG----GLER 491
+ LNPLK+C PS+V EF + + R V N + S+ + G GL R
Sbjct: 547 TIYSKLNPLKICAPSIVEEFAKIAHHLRFMYVYPLLATNKRIRLSQFALGAGNASSGLLR 606
Query: 492 --------------------LDMFFPFDPCLLKKSDRF 509
L +FPFDP L KS R+
Sbjct: 607 DSGFSTGVATEDGEEESWHQLVAYFPFDPYQLPKSRRW 644
>gi|315051944|ref|XP_003175346.1| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Arthroderma gypseum CBS 118893]
gi|311340661|gb|EFQ99863.1| RNA polymerase I-specific transcription initiation factor rrn3
[Arthroderma gypseum CBS 118893]
Length = 715
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 140/575 (24%), Positives = 230/575 (40%), Gaps = 116/575 (20%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGR-LDPDNRAL--------LETSLKALSGAVSYI 79
VR A+ GD++ Y+++ + + + L+ D + L+ L L G VS +
Sbjct: 111 VRRAIQRHLVGDSEGYDRIKEMFSVDPKALEDDGTPVFDLPSPVSLKNHLMGLLGNVSSL 170
Query: 80 DISHHESLLVSIFGMSMW-NYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSY 138
D S S LV S W D + + +L+A+ G Y+ S L MLV+
Sbjct: 171 DGSC--SGLVHAMLNSEWVGRDTTYVRLFVQFLATLSAARGGYLSSVLKMLVNGLRQVDP 228
Query: 139 FLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMI 198
L + ++ ++ RVH A++SI +VP L PI+ P + + +K
Sbjct: 229 RCGNLPDYDPVDSS-EMYHRVHHAIRSIAQVVPACSVTLSPILSSSFP---HDSDTVKSH 284
Query: 199 VVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDME--IGWDDILHDDFSKGIFEMELE 256
+ Y N +K+ S + EL RS +L + ++L+ +D + + +D+ D + ++
Sbjct: 285 ITYTRNLIKI-ISYLPEL-RSDILALITEKLVKIDAQNQVNMEDLEEDT------QQDIM 336
Query: 257 DVEEAADDA----------------EQVGDELPSGSLSR-KSLSGNLIAELLDSLMVLTF 299
D A D A + GD L R KS+ ++ +DSL+ + F
Sbjct: 337 DALNATDAAILEKDDDDYSDDESEISEDGDP----DLQRVKSVKECMLK--VDSLVDILF 390
Query: 300 EH---------LESCEGT-----------------GRLIEFVMFYACALDPENCGLRFAT 333
E+ LE E R +FV+F+ P RFA
Sbjct: 391 EYYNYPFVSGSLEDQEQVLDFLLAHFKSIILPTYRSRHAQFVLFHFAQASPIFVD-RFAA 449
Query: 334 MLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDI 393
+ ++ +S P + R A +YLASF++R + I + L L + D
Sbjct: 450 ICIEIILSKSQPVIIRQYAAAYLASFVARGAHVPGDAIRDVFNLLGSHALALLSSYEADC 509
Query: 394 -NPKAHRV--FYSGCQAIMYVLCFRMRSIMD-----------IPRLK------SQLLLMP 433
P R FYS QA+ Y+ CFR + + + +P L SQ +
Sbjct: 510 RGPDLRRYSPFYSTAQALFYIFCFRWKDLTNAAVEAEAEGNSLPHLNVDEVSFSQEMTNT 569
Query: 434 LETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRA-------- 485
L + LNPLKVC P +VSEF + + LF + N + R
Sbjct: 570 LHRTIYSKLNPLKVCSPGIVSEFAKITHYFGLFYLYPKLESNKRIRIHNFRGMGSMAMDT 629
Query: 486 -FGGLER-----------LDMFFPFDPCLLKKSDR 508
+G +ER +D +FPFDP + + R
Sbjct: 630 TYGTIERETRADDSLAVQMDDYFPFDPYKMPRGSR 664
>gi|67516061|ref|XP_657916.1| hypothetical protein AN0312.2 [Aspergillus nidulans FGSC A4]
gi|40746562|gb|EAA65718.1| hypothetical protein AN0312.2 [Aspergillus nidulans FGSC A4]
gi|259489458|tpe|CBF89746.1| TPA: RNA polymerase I specific transcription initiation factor RRN3
superfamily (AFU_orthologue; AFUA_1G02590) [Aspergillus
nidulans FGSC A4]
Length = 666
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 137/578 (23%), Positives = 238/578 (41%), Gaps = 119/578 (20%)
Query: 29 VREALTS-VQSGDNDNYNQLVAVMHLSGR-LD----PDNRALLETSLK----ALSGAVSY 78
VR A+ V GD++ Y+++ V ++ R LD P + T+LK L V+
Sbjct: 66 VRRAIQRHVSGGDSEAYDRVKEVFSINPRRLDANGMPPSNVPTHTTLKHHLMGLLSNVAA 125
Query: 79 IDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSY 138
+D S + L+ ++ D + + +LAA+ G Y+ S L ML +
Sbjct: 126 LDRSCN-GLVQAVLDSEWLGRDESYIKLYIRFLGNLAAAQGSYLGSVLKMLAN------- 177
Query: 139 FLDKLKEPHGLER--------KHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHN 190
++ +L P G R + +RVH A++ + LVP L I+ + P
Sbjct: 178 YMGEL--PRGTGRLPGYPHVHPAEAYTRVHMAMRHVLQLVPSGSGSLSQIISSQFPF--- 232
Query: 191 KHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIG----------WDD 240
+ K + Y +N +K+ A +++ +L + ++L+ +D++I ++
Sbjct: 233 DTDSAKANIAYTQNLVKVIRYA--PELQADILALITEKLVKIDVQIQVDMEDLEDEEGEE 290
Query: 241 ILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSR-KSLSGNLIAELLDSLMVLTF 299
+LH + + E D E+ D+A V DE R K++ N++ LD ++ F
Sbjct: 291 VLHAISPEAVMFAEDLDDEDDDDNASVVSDESVEPESRRLKTIKENILK--LDGMIDTLF 348
Query: 300 EHLESCEGTG--------------------------RLIEFVMFYACALDPENCGLRFAT 333
E+ +G R +F++F+ P RFA
Sbjct: 349 EYYAPPFTSGTLDDKENALDLLLSHFSTIILPTYRSRHSQFLLFHFSQSSPILVD-RFAA 407
Query: 334 MLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDI 393
+ + P + R SA +YLASF++R +S +++ + D + N L D
Sbjct: 408 TCVQLIFNKAQPAILRQSAAAYLASFVARGAHIS----SEVVRDVFDLLGTHLNNLRLDY 463
Query: 394 NP-------KAHRVFYSGCQAIMYVLCFRMRSIM------DIPR----LKSQLLLMP--- 433
P + FYS QA++Y+ CFR R + D P L+ + + P
Sbjct: 464 EPSCRGPDLRRFGPFYSTAQALLYIFCFRWRDLTTAAIEGDTPEQIDELEPEDITFPPSI 523
Query: 434 ---LETVLKHDLNPLKVCLPSVVSEF---------------LQQSKAARLFTVSETFVFN 475
L + LNPLKVC P++VS+F L+ +K R+ T +
Sbjct: 524 RDVLHKAILSKLNPLKVCSPAIVSQFARMSQHLNFIYVFTILETNKRLRMSTYRNIAALS 583
Query: 476 DLLESELSRAFGGLE----RLDMFFPFDPCLLKKSDRF 509
D S + R + +LD +FPFDP L +S R+
Sbjct: 584 DPRYSHVERETRAGDDLGYQLDAYFPFDPYQLPRSRRW 621
>gi|403274159|ref|XP_003928854.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 [Saimiri boliviensis boliviensis]
Length = 730
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 127/543 (23%), Positives = 213/543 (39%), Gaps = 113/543 (20%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRA-LLETSLKALSGAVSYIDISHHESL 87
V E L + G+ +++ L + LDPD + + L ++ Y+ E L
Sbjct: 56 VTEVLLKYKKGETNDFELLKNQL-----LDPDIKDDQIINWLLEFRSSIMYL-TKDFEQL 109
Query: 88 LVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPH 147
+ I + N V++ + +L ++ ++ CL+M+ S+F PP + +
Sbjct: 110 ISIILRLPWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGDV-- 167
Query: 148 GLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERL----KMIVVYME 203
L + FD R L I+ + +P+ N L +MI Y+
Sbjct: 168 ----DVSDSDDEDDNLPANFDTC----HRALQIIARYVPSYANLKFHLLGMIEMIECYVH 219
Query: 204 NTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILH-----------DDFSKGIFE 252
N L++ S +R +L ++++L+ LD+ DI D ++G+F
Sbjct: 220 NLLRI--SVYFPTLRHEILELIIEKLLKLDVSASRQDIEDAEETEAQTCDGTDSTEGLFN 277
Query: 253 M-ELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLES-CEGTGR 310
M E E+ E A + D++ + +AE LD LM L +++ C G+
Sbjct: 278 MDEDEETEHEARANPERLDQMV-----------HPVAERLDILMSLLLSYMKDVCYVDGK 326
Query: 311 L----------------------------IEFVMFYACALDPENCGLRFATMLADVFVSG 342
+ ++F+MFY C+ F A+ F+
Sbjct: 327 VDNSKTKDLYRNLINIFDKLLLPTHASCHVQFLMFYLCS---------FKLGFAEAFLEH 377
Query: 343 LYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA----- 397
L+ +L S + S L LV+W Y + D KA
Sbjct: 378 LWKXXXXXXXXIFLFS----------STVKSCLDLLVNWLHIYLH--NQDSGTKAFCDVA 425
Query: 398 -HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP---LETVLKHDLNPLKVCLPSVV 453
H FYS CQA+ Y FR + ++ LK L + E ++ LNPLK+CLPSVV
Sbjct: 426 LHGPFYSACQAVFYTFVFRHKQLLS-GNLKEGLQYLQSLNFERIVMSQLNPLKICLPSVV 484
Query: 454 SEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER-------LDMFFPFDPCLLKKS 506
+ F + +L N+ + R+ G + LD FFPFDPC+LK+S
Sbjct: 485 NFFAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQTCTNPLDTFFPFDPCVLKRS 544
Query: 507 DRF 509
+F
Sbjct: 545 KKF 547
>gi|348681118|gb|EGZ20934.1| hypothetical protein PHYSODRAFT_328981 [Phytophthora sojae]
Length = 786
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 120/481 (24%), Positives = 190/481 (39%), Gaps = 153/481 (31%)
Query: 141 DKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERL--KMI 198
++ K P ER H L+ + LVP A L PI+ + P H+R+
Sbjct: 195 EQPKGPSLEERIQARFEAAHQTLERVLALVPTAANVLFPILCEHFP-----HKRMDAPTQ 249
Query: 199 VVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDV 258
V Y+ N L++ G +R +L ++D+L+ +D+EI D+ D + + +D+
Sbjct: 250 VAYLRNVLRVTGYVSG--LRERVLGLIIDQLVAIDVEIKLDESEED--VFTMDDFLDDDM 305
Query: 259 EEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESC------------E 306
D + QV DE+ A+ LD +M++ FEH+E C E
Sbjct: 306 LPPDDSSRQV-DEM---------------ADKLDQMMLVMFEHIEQCTAAPDAATDASNE 349
Query: 307 GT-------------------------GRLIEFVMFYACALDPENCGLRFATMLADVFVS 341
T + +F++FY C +DP+ D+F+S
Sbjct: 350 ETDVRQAALIFKYLLKVFEHSILNTHRSKYPQFLLFYVCRMDPQ---------FQDIFIS 400
Query: 342 GL--------YPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILG--- 390
L PP TR S +YLASFL+RA+++S ++ L +L+ W + +I
Sbjct: 401 QLLTTSLDPHTPPTTRQSCGAYLASFLARAKYISVAYLQKALYQLLKWLHDQMDIYDAAH 460
Query: 391 ---------------------------GDINPKAHR--VFYSGCQAIMYVLCFRMRSI-- 419
G+ P A + ++ S Q + Y++CFR I
Sbjct: 461 EELDQDETREGESAAEKEERLLERRERGEAPPAAFQESIYISSLQIVCYMMCFRGLEIAT 520
Query: 420 MDIPRLKSQLLLMPLETVLKHDLN--PLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDL 477
MD L + E +L PL C +V +EFL +A L VSE +
Sbjct: 521 MDDGAGYESLRSLGWERLLVTSAGYCPLAYCQQTVATEFLNLVEAFDL--VSE-----EC 573
Query: 478 LE---------SELSRAFGGLER--------------------LDMFFPFDPCLLKKSDR 508
LE S LS++ +ER L+ FFPFDP LL++S R
Sbjct: 574 LERVDQAIGTVSTLSKSTKSMERSKKPTAGSAPASTLLGQRQPLETFFPFDPYLLRRSFR 633
Query: 509 F 509
+
Sbjct: 634 Y 634
>gi|91090592|ref|XP_972768.1| PREDICTED: similar to transcription initiation factor RRN3
[Tribolium castaneum]
Length = 594
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 111/505 (21%), Positives = 217/505 (42%), Gaps = 57/505 (11%)
Query: 36 VQSGDNDNYNQLVAVMHLSGRLDPDNRALLETSLKALSGAVSYIDISHHESLLVSIFGMS 95
++ G+ +Y LV ++ + D D +LL+ + + +S + + + ++ +
Sbjct: 57 IKHGNAKDYENLVCLIRDAELFDDDISSLLKEATECISIMKQELRL-----FVEALLSVD 111
Query: 96 MWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQV 155
+ +V+ + I +L A++ + D + LV+ F PP L + +G K +
Sbjct: 112 WIERNENVVKEYQSFIANLVAAHNYHADFVINKLVTLFFPP---LTDPEWENGTPSKTDI 168
Query: 156 L--SRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAM 213
L VH+ L + VPL L+ ++ P + NK + Y++N L +
Sbjct: 169 LKCQHVHSLLCELLRTVPLCNELLIHALIDHFPYM-NKSTHIHE--YYIQNLLWV--ICY 223
Query: 214 GELVRSTLLMAVVDRLIDLDME--------IGWDDILHDDFSKGIFEMELEDVEEAADDA 265
+R +L + +LI +D+ + ++I D SK + L+ V A
Sbjct: 224 QPTLRPNILHLIFSKLIIMDVSAPREEIAKLEEEEIFMMDESKTNTTINLDCVHSMAHTL 283
Query: 266 EQVGDELPSGSLSR------KSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYA 319
+ D++ + S L+ L ++ + + + T ++FVMF
Sbjct: 284 DVCLDKVFNYIYSECHEPGTNDLNWGKTKSLYQDILTVFDQSILPTYNTHH-VQFVMFVL 342
Query: 320 CALDPENCGLRFATMLADVFVSGLYPPLT--------RMSAVSYLASFLSRARFLSPCFI 371
C+ F T L + F + L+ + R +AV+Y+ SF++RA F+ +
Sbjct: 343 CS---------FKTTLTEAFFNYLWKKVCNPNVASVIRQAAVNYIVSFIARATFVPLTML 393
Query: 372 VSLLKRLVDWCLEYCNILGG----DINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKS 427
L+++ +W Y G + + + H VFY+ CQA+ YV+ FR + +++ +
Sbjct: 394 KGTLQQMAEWIHSYIATQDGLECVNSDLRLHSVFYTVCQALFYVISFRHKDLVNTKKNVV 453
Query: 428 QLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARL---FTVSETFVFNDL---LESE 481
L + L ++ LNPL+VC P+VV F ++ +L +++ E N L E
Sbjct: 454 FLESLNLAKIVTSRLNPLRVCQPAVVQNFAAITRKYQLAYCYSIIEHNSRNTLPTVYRDE 513
Query: 482 LSRAFGGLERLDMFFPFDPCLLKKS 506
L+ +PFDP +L +S
Sbjct: 514 KGFVTVSSNVLEACYPFDPFVLSRS 538
>gi|119575139|gb|EAW54752.1| hCG1786665, isoform CRA_c [Homo sapiens]
Length = 276
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 90/180 (50%), Gaps = 17/180 (9%)
Query: 345 PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA------H 398
P + R +A +Y+ SFL+RA+F+ + S L LV+W Y N D KA H
Sbjct: 21 PAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLLVNWLHIYLN--NQDSGTKAFCDVALH 78
Query: 399 RVFYSGCQAIMYVLCFRMRSIM--DIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEF 456
FYS CQA+ Y FR + ++ ++ L + E ++ LNPLK+CLPSVV+ F
Sbjct: 79 GPFYSACQAVFYTFVFRHKQLLSGNLKEGLQYLQSLNFERIVMSQLNPLKICLPSVVNFF 138
Query: 457 LQQSKAARLFTVSETFVFNDLLESELSRAFGGLER-------LDMFFPFDPCLLKKSDRF 509
+ +L N+ + R+ G + LD FFPFDPC+LK+S +F
Sbjct: 139 AAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQICTNPLDTFFPFDPCVLKRSKKF 198
>gi|213404430|ref|XP_002172987.1| RNA polymerase I-specific transcription initiation factor rrn3
[Schizosaccharomyces japonicus yFS275]
gi|212001034|gb|EEB06694.1| RNA polymerase I-specific transcription initiation factor rrn3
[Schizosaccharomyces japonicus yFS275]
Length = 590
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 97/407 (23%), Positives = 162/407 (39%), Gaps = 80/407 (19%)
Query: 158 RVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKL---ESSAMG 214
R H ALK + DLVP A + L +++ P K E L + Y+ N L + S G
Sbjct: 172 RAHLALKYVLDLVPRAHSHLYNTIIEEFPY---KDESLTAQMTYISNILSICEYVPSIKG 228
Query: 215 ELVRSTLLMAVVDRLIDLDMEIGWDDIL---------------------HDDFSKGIFEM 253
++R A++D+LI +D+E+ + DD
Sbjct: 229 HVIR-----AIIDKLIQVDVELHTELEDFDEEEDDDDDEDVDSESEKSASDDLLTASTLY 283
Query: 254 ELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEG------ 307
EL + E + ++P S L+ E LD L+ + F +L+S
Sbjct: 284 ELHESANGETAMEPMSMDVPETS-------PKLLVEQLDQLLYMLFAYLDSNLSPINVDR 336
Query: 308 -------------------TGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLT 348
R ++F++F+A DPE + +L +V +
Sbjct: 337 EIVYNYLINSFVSTVLNTFQSRYVQFLIFWASQKDPEFTDILLG-VLTEVCLDPSKSCTI 395
Query: 349 RMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINP---KAHRVFYSGC 405
R+S+ Y+ S+++RA+ L P I ++ L W Y + D H V Y+
Sbjct: 396 RISSAMYIGSYVARAKSLDPQTIRVMVNMLCRWIEAYLDQYEDDKCEDLLSKHSVCYAII 455
Query: 406 QAIMYVLCFRMRSIM---DIPRLKSQLLLMPLETVLKH----DLNPLKVCLPSVVSEFLQ 458
Q++ Y+ CFR + + + + + +P VL+ LNPL+ C +VV +F +
Sbjct: 456 QSVFYIFCFRWKELKLSSENDSVGDKFEWLPGLAVLQRAVLSRLNPLRFCSTNVVQQFAK 515
Query: 459 QSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKK 505
+ +VF + + S G E +D FFPFDP L K
Sbjct: 516 VANHLNFL-----YVFTIIEHNRKSTIREGFETIDCFFPFDPLRLPK 557
>gi|195116148|ref|XP_002002618.1| GI11780 [Drosophila mojavensis]
gi|193913193|gb|EDW12060.1| GI11780 [Drosophila mojavensis]
Length = 617
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 104/211 (49%), Gaps = 20/211 (9%)
Query: 312 IEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFI 371
++FV+F+AC++ P + F T L + + R +AVSY+ASFL+RA+F+ I
Sbjct: 342 VQFVIFHACSIRPAYAEI-FLTSLWQKVQNPNVSSIIRHAAVSYIASFLARAKFVPLSTI 400
Query: 372 VSLLKRLVDWCLEYCN----ILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKS 427
LK L +W Y N + + KA+ VF+S CQA+ Y++ FR R + + +
Sbjct: 401 TYYLKELSNWANNYINDSDEFSSKNCSLKANMVFFSVCQAMFYLIAFRARDLTINHKNLT 460
Query: 428 QLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFG 487
L + L + NPL+ CLP V + F ++ +L + +LE R
Sbjct: 461 LLNTLQLSRLAMCHFNPLRYCLPPVATAFAGVTRTHQLAYC------HTVLERNARRKLA 514
Query: 488 GL---------ERLDMFFPFDPCLLKKSDRF 509
+ E L+ FFPFDP +L S+++
Sbjct: 515 TIYGHDKLMPEETLETFFPFDPYILPLSNKY 545
>gi|290977280|ref|XP_002671366.1| predicted protein [Naegleria gruberi]
gi|284084934|gb|EFC38622.1| predicted protein [Naegleria gruberi]
Length = 821
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 116/247 (46%), Gaps = 27/247 (10%)
Query: 289 ELLDSL---MVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYP 345
E LDS+ M++ F + I+F+MFY C+ + +L ++F S L+
Sbjct: 364 EFLDSIFHSMMVLFRSFVLNQYQLHSIQFLMFYVCSFHVNYMERFISFLLGNIFNSQLHV 423
Query: 346 PLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDI---NPKAHRVFY 402
+ R +YL+ LSRA++++ ++ L +L+ W +Y + + + H +FY
Sbjct: 424 EV-RKCCAAYLSGLLSRAKYVTNTIVLRTLGQLLAWSEKYIITFEQSLQYLDVETHSLFY 482
Query: 403 SGCQAIMYVLCFRMRSIM---------------DIPRLKSQ----LLLMPLETVLKHDLN 443
S CQ + YVLCF+++ ++ D+ +L ++ P++ ++ N
Sbjct: 483 SICQGVFYVLCFKIQQLLKPEDGEGGETSPIRKDVKQLMAEGRQFFSQSPIKRIIYSKFN 542
Query: 444 PLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERL-DMFFPFDPCL 502
PLK+ V E + LF N + L +GG+ L + FFPFDP L
Sbjct: 543 PLKIVASDVAEEVVNAFSRFYLFDFHHVLEENQNIVVPLRGGYGGVNYLENNFFPFDPYL 602
Query: 503 LKKSDRF 509
L+KS+++
Sbjct: 603 LRKSEKY 609
>gi|193674016|ref|XP_001943833.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Acyrthosiphon pisum]
Length = 604
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 113/468 (24%), Positives = 216/468 (46%), Gaps = 71/468 (15%)
Query: 86 SLLVSIFGMSMW-NYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTP-PSYFLDKL 143
+L V + + W N + +V++ +G ++ + ++ + + LV+ F+ + D++
Sbjct: 104 TLFVKVILILKWMNRNYEVVNEYRGFLLDVCTAHNYHTKFAIEQLVTCFSHVDTTVFDRV 163
Query: 144 KEPHGL--ERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVY 201
+G+ E + + VH L+++ ++PLA L+ + ++ P K ++ + Y
Sbjct: 164 ---NGMPSEEEERGFQNVHKTLEALLKVIPLAKDLLMTALRKKFPY---KKSSVESHLHY 217
Query: 202 MENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWD--DILHDDFSKGI---FEMELE 256
+ N L + + + +R +L +V +L+++D+ I + D L + + GI F M++
Sbjct: 218 IHNLLVI--TEYEKSLRKQILSLIVSKLVEIDVHIPREELDRLESNVNVGIEDIFPMDV- 274
Query: 257 DVEEAADDAEQVGDELPSGSLS---RKSL----------SGNLI---AELL--DSLMVLT 298
D E D +++ E S +L R+ G L+ +LL D L V
Sbjct: 275 DGECMQVDPDKLEAESFSHTLDVCLRRLFVYMKTTCHDPDGGLLWNDTKLLYHDLLSVFE 334
Query: 299 FEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPP--------LTRM 350
E L + + I++V++Y L F T LA+ F + L+ R
Sbjct: 335 SEILPTYNSSH--IQYVIYYF---------LSFKTTLAENFSNWLWKKCCDVSSSSTIRQ 383
Query: 351 SAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCN-------ILGGDINPKAHRVFYS 403
+A YLASFL RA F+ + + L + WC Y N ++ D+ + H VFYS
Sbjct: 384 AAAGYLASFLCRAPFILNTVLKNTLFEMSTWCNSYINRVDKLVKVVNEDL-LRWHAVFYS 442
Query: 404 GCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAA 463
CQ++ Y++ FR +MD R + + L ++ L+PL++C +VV+ F +K
Sbjct: 443 MCQSLFYIISFRHHDLMDSKRNLKFMENLNLSKIVTSRLSPLRLCCSTVVNRFAHITKTY 502
Query: 464 RLFTVSETFVFNDLLESELSRAFGGL--ERLDMFFPFDPCLLKKSDRF 509
+L T+ + +++ + + E L FFPFD +L +S F
Sbjct: 503 QL-----TYCY-AVMDGHIRITDQSIKDEWLYSFFPFDFYVLPRSKDF 544
>gi|297698532|ref|XP_002826374.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like, partial [Pongo abelii]
Length = 275
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 90/181 (49%), Gaps = 19/181 (10%)
Query: 345 PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA------H 398
P + R +A +Y+ SFL+RA+F+ + S L LV+W Y N D KA H
Sbjct: 20 PAIIRQAAGNYIGSFLARAKFIPLITVRSCLDLLVNWLHIYLN--NQDSGTKAFCDVALH 77
Query: 399 RVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP---LETVLKHDLNPLKVCLPSVVSE 455
FYS CQA+ Y FR + ++ LK L + E ++ LNPLK+CLPSVV+
Sbjct: 78 GPFYSACQAVFYTFVFRHKQLLS-GNLKEGLRYLQSLNFERIVMSQLNPLKICLPSVVNF 136
Query: 456 FLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER-------LDMFFPFDPCLLKKSDR 508
F + +L N+ + R+ G + LD FFPFDPC+LK+S +
Sbjct: 137 FAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQTCTNPLDTFFPFDPCVLKRSKK 196
Query: 509 F 509
F
Sbjct: 197 F 197
>gi|426381709|ref|XP_004057477.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like, partial [Gorilla gorilla gorilla]
Length = 301
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 89/181 (49%), Gaps = 19/181 (10%)
Query: 345 PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA------H 398
P + R +A +Y SFL+RA+F+ + S L LV+W Y N D KA H
Sbjct: 99 PAIIRQAAGNYTGSFLARAKFIPLITVKSCLDLLVNWLHIYLN--NQDSGTKAFCDVALH 156
Query: 399 RVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP---LETVLKHDLNPLKVCLPSVVSE 455
FYS CQA+ Y FR + ++ LK L + E ++ LNPLK+CLPSVV+
Sbjct: 157 GPFYSACQAVFYTFVFRHKQLLS-GNLKEGLQYLQSLNFERIVMSQLNPLKICLPSVVNF 215
Query: 456 FLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER-------LDMFFPFDPCLLKKSDR 508
F + +L N+ + R+ G + LD FFPFDPC+LK+S +
Sbjct: 216 FAAITNKYQLVFCYTIIERNNRQMLPVIRSTTGGDSVQTCTNPLDTFFPFDPCVLKRSKK 275
Query: 509 F 509
F
Sbjct: 276 F 276
>gi|116181816|ref|XP_001220757.1| hypothetical protein CHGG_01536 [Chaetomium globosum CBS 148.51]
gi|88185833|gb|EAQ93301.1| hypothetical protein CHGG_01536 [Chaetomium globosum CBS 148.51]
Length = 995
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 139/576 (24%), Positives = 242/576 (42%), Gaps = 92/576 (15%)
Query: 15 MEDVNISDLELVYH-VREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRALLETSLK--- 70
++++N LE VR+AL GD+++Y+ L + L + P++ + + K
Sbjct: 66 IKEINSKSLEEAKREVRQALEGHSRGDDEDYDNLKDIF-LPKNVTPNDDEDEDETTKPQD 124
Query: 71 ------ALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDS 124
AL+G V + S LL S+ + D + A L+ +L++ G
Sbjct: 125 LIVYVVALTGYVPLLGRSC-SGLLRSVLRCNWLERDENFARAYIQLLAALSSVQGSLFTQ 183
Query: 125 CLTMLVSNFTPPSYFLDKLK-EPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQ 183
LTM+V FT + EP E K + L H LK + +L P +L +V
Sbjct: 184 ALTMIVDKFTETRHTSSAPGFEPVDPETKKKWL---HVGLKYLLELFPAGQHIILSLVAS 240
Query: 184 RMP-TVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDIL 242
+ P T K ++ I ++ L+L+++ G + ++ ++ RL+ LD+E+ D
Sbjct: 241 KFPFTEATKATHMEFI----DHLLRLKAARPG--LERDIMELILSRLVKLDVEMTLDLEN 294
Query: 243 HDDFSK-------GIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLM 295
DD + G + + E+ ++ +D + D+ +++ L+ E +D+++
Sbjct: 295 DDDETTRAVLRQLGASDAKNEEDDDDSDADSVLSDDDDLNEQAKRVLTVKNKLETMDAIL 354
Query: 296 VL-------TFEHLESCEGTGRLIEFVMFYACALDP-------ENCGLRFA---TMLADV 338
L FE ES E T + + ++ + P + +FA L ++
Sbjct: 355 DLLFSIYDPIFEDPESPEATEAFQDLLSDFSNVILPHLKSRHTQYLLFKFAMKSQQLMEM 414
Query: 339 FVSGLY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILG 390
F+ L+ PP+ + +AV+YLASF +R + + + K +D+ Y +
Sbjct: 415 FIGTLFNLAFESNRPPVVKQAAVAYLASFTARGAMVQSEQVQLITKTFLDYMDHYRAVHT 474
Query: 391 GDINPKAHRV--FYSGCQAIMYVLCFRMRSIMDIPRLKSQLLL----------MPLETVL 438
G P R +Y+ Q ++Y+ CFR R ++D L S L +P T L
Sbjct: 475 GCRGPDVRRYSQYYAYFQGLLYIFCFRWRDLIDQDLLPSSLDWDDPASFVGQELPWMTGL 534
Query: 439 K--------HDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLE-SEL---SRAF 486
K LNPLK C P +V EF + S RL + N + S+ S A
Sbjct: 535 KSRLQANIGSKLNPLKCCSPIIVDEFARLSHHLRLMYIYPQIEKNKSVHLSQFFTGSYAT 594
Query: 487 GGLER-------------LDMFFPFDPCLLKKSDRF 509
GG R L+ FPFDP L + R+
Sbjct: 595 GGALRDSGFEFDDEKWTHLEACFPFDPFQLPVARRW 630
>gi|390338869|ref|XP_784172.3| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Strongylocentrotus purpuratus]
Length = 351
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 105/215 (48%), Gaps = 29/215 (13%)
Query: 312 IEFVMFYACALDPENCGLRFATMLADVFVSGLY--------PPLTRMSAVSYLASFLSRA 363
++F+ FY C+ F + D FV L+ P + R + SY+ASF++RA
Sbjct: 78 VQFLFFYFCS---------FRQGIVDSFVDALWRRFINPNTPAVVRQTTASYMASFVARA 128
Query: 364 RFLSPCFIVSLLKRLVDWCLEYCNILGG----DINPKAHRVFYSGCQAIMYVLCFRMRSI 419
+L + + L +V W Y N K H FYS CQA++Y+ +R + +
Sbjct: 129 NYLPASTVNACLDLMVSWIHCYINNQESASRFSKEVKVHGPFYSLCQAVLYIFVYRHKQL 188
Query: 420 MDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEF---LQQSKAARLFTVSETFVFND 476
++ + ++ + LE V+ LNPLKVCLPSVV+ F ++ + A +TV E +
Sbjct: 189 LENNKGLHYIMSLNLERVVTCRLNPLKVCLPSVVNIFATLARKFQVAFCYTVMEHNARSK 248
Query: 477 LLESELSRAFGGL-----ERLDMFFPFDPCLLKKS 506
L +L+ G LD FFPFDP +L +S
Sbjct: 249 LPVFKLNTFGSGAMATPGNPLDSFFPFDPYVLPQS 283
>gi|255950566|ref|XP_002566050.1| Pc22g21540 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211593067|emb|CAP99442.1| Pc22g21540 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 690
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 110/471 (23%), Positives = 195/471 (41%), Gaps = 93/471 (19%)
Query: 113 SLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPL 172
+LAA+ G ++ L ML +N + +L + + + ++ +RVH A++ + L+P
Sbjct: 198 NLAAAQGTFLVPVLKMLATNLASVPRAVGRLPG-YAVVQPSEMHTRVHMAMRHVLQLIPA 256
Query: 173 APTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDL 232
L I+ + P + + Y N +++ S A ++S +L + ++L+ +
Sbjct: 257 GSGSLSQILSTQFPF---DSDPASASIAYTRNLIQIISYA--PELQSDILALITEKLVKV 311
Query: 233 DMEIGWD-----------------------------DILHDDFSKGIFEME--LEDVEEA 261
D+EI D D DD +KG +++ + V+
Sbjct: 312 DVEIQVDMEDFEEEVGDEILDEVDEEEEDDDASVASDDSEDDDTKGAKKIKDNILKVDGM 371
Query: 262 ADDA-EQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYAC 320
D E SGSL K + +L+ ++++ T+ R +F++F+
Sbjct: 372 IDILFEYFSPPFTSGSLDDKENALDLLLSHFQTIILPTYR--------SRHSQFLLFHFS 423
Query: 321 ALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVD 380
P RFA+ + + L P + R SA +YLASF++R +S +++ + D
Sbjct: 424 QASPVLID-RFASTFVQLIFNKLQPGILRQSAAAYLASFVARGAHIS----GEVVRDVFD 478
Query: 381 WCLEYCNILGGDI-----NPKAHRV--FYSGCQAIMYVLCFRMRSIM----------DIP 423
L + N L D P R FYS QA++Y+ CFR R + +
Sbjct: 479 LLLTHLNSLRMDYEGSCRGPDLRRYGPFYSTAQALLYIFCFRWRDLTTAAIDGDTADQVD 538
Query: 424 RLKSQLLLMP------LETVLKHDLNPLKVCLPSVVSEF---------------LQQSKA 462
L+ + P L + LNPLKVC P++V+EF L+ +K
Sbjct: 539 ELEPGQIAFPPNIKEFLHKCIYSRLNPLKVCSPAIVAEFARIAHHFQFLYVYPLLETNKR 598
Query: 463 ARLFTVSETFVFNDLLESELSRAFGGLE----RLDMFFPFDPCLLKKSDRF 509
R+ +D S + R + +LD +FPFDP L +S R+
Sbjct: 599 IRVTAFRNLSNLSDPRFSHVGREIRAGDNVGYQLDAYFPFDPYQLPRSRRW 649
>gi|296811122|ref|XP_002845899.1| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Arthroderma otae CBS 113480]
gi|238843287|gb|EEQ32949.1| RNA polymerase I-specific transcription initiation factor rrn3
[Arthroderma otae CBS 113480]
Length = 683
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 120/483 (24%), Positives = 194/483 (40%), Gaps = 93/483 (19%)
Query: 106 ALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKS 165
L G + SL A+ G Y++S L MLV+ L + H ++ R+H A++S
Sbjct: 163 GLLGNVSSLDAARGGYLNSVLRMLVNGLLQVDPRAGNLPD-HDPVDSSEIHHRIHYAIRS 221
Query: 166 IFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAV 225
I +VP L PI+ P + + +K + Y N +++ S + EL RS +L +
Sbjct: 222 IAQVVPACSVSLSPILSSSFP---HDSDTVKCHITYTRNLIRI-ISYLPEL-RSDILALI 276
Query: 226 VDRLIDLDME--IGWDDILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLS 283
++L+ +D + + +D+ D + ++ D + D A DE S S S
Sbjct: 277 TEKLVKIDAQNQVNMEDLDEDT------QQDIMDALNSTDTAILEKDEEDSDDESEMSDD 330
Query: 284 GNLIAEL------------LDSLMVLTFEH---------LESCEGT-------------- 308
G L +L +DS++ + FE+ LE E
Sbjct: 331 GTLDPDLQRIKSVKECMLKVDSMIDILFEYYHYPFISGSLEDQEQVLDILLAHFQTIILP 390
Query: 309 ---GRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARF 365
R +FV+F+ P RFAT ++ ++ +P + R A +YLASF++R
Sbjct: 391 TYRSRHAQFVLFHFAQASPIFVD-RFATTCIEIILNKSHPVIIRQYAAAYLASFVARGAH 449
Query: 366 LSPCFIVSLLKRLVDWCLEYCNILGGDI-NPKAHRV--FYSGCQAIMYVLCFRMRSIM-- 420
+S I + L L + D P R FYS QA+ Y+ CFR + +
Sbjct: 450 VSGEVIRDVFSLLGSHILNLLSSYEADCRGPDLRRYGPFYSTAQALFYIFCFRWKDLTIA 509
Query: 421 ---------DIPRLK------SQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARL 465
+P L Q + L + LNPLKVC P +V+EF + + L
Sbjct: 510 AIEAEAEGNSLPHLNVDEVSFHQEMTNTLHRSIYSKLNPLKVCSPGIVAEFAKITHYFGL 569
Query: 466 FTVSETFVFNDLLESELSRA---------FGGLER-----------LDMFFPFDPCLLKK 505
F + N + R +G +ER LD +FPFDP + +
Sbjct: 570 FYLYPKLESNKRIRIHNLRGMSSMAMDPMYGTIERETRADDNLAVQLDDYFPFDPYKMPR 629
Query: 506 SDR 508
R
Sbjct: 630 GAR 632
>gi|149042546|gb|EDL96183.1| rCG49762 [Rattus norvegicus]
Length = 291
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 102/218 (46%), Gaps = 36/218 (16%)
Query: 316 MFYACALDPENCGLRFATMLADVFVSGLY--------PPLTRMSAVSYLASFLSRARFLS 367
MF+ C+ F A+ F+ L+ P + R +A +Y+ SFL+RA+F+
Sbjct: 1 MFFLCS---------FKLGFAEAFLEHLWKKLQDPNNPVIIRQAAANYIGSFLARAKFIP 51
Query: 368 PCFIVSLLKRLVDWCLEYCNILGGDINPKA------HRVFYSGCQAIMYVLCFRMRSIMD 421
+ S L LV+W Y N D KA H FYS CQA+ Y + FR + ++
Sbjct: 52 LITVKSCLDLLVNWLHLYLN--SQDSGTKAFCDVALHGPFYSACQAVFYTVVFRHKQLLS 109
Query: 422 IPRLKSQLLLMP---LETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLL 478
LK L + E ++ LNPLK+CLP VV+ F + +L N+
Sbjct: 110 -GNLKEGLRYLQSLNFERIVLSQLNPLKICLPRVVNFFAAITNKYQLVFCYTIMERNNRQ 168
Query: 479 ESELSRAFGGLER-------LDMFFPFDPCLLKKSDRF 509
+ R+ G + LD FFPFDPC+LK+S +F
Sbjct: 169 MLPVIRSTAGGDSVQTCTNPLDTFFPFDPCMLKRSKKF 206
>gi|195164524|ref|XP_002023097.1| GL21145 [Drosophila persimilis]
gi|194105182|gb|EDW27225.1| GL21145 [Drosophila persimilis]
Length = 596
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 108/219 (49%), Gaps = 39/219 (17%)
Query: 312 IEFVMFYACALDPENCGLRFATMLADVFVSGLY--------PPLTRMSAVSYLASFLSRA 363
++FV+F+ C++ + ++ F+S L+ + R +AV Y+AS+L+RA
Sbjct: 327 VQFVIFHVCSI---------RSAYSEAFLSSLWLKVQNPNVSAIIRHAAVGYIASYLARA 377
Query: 364 RFLSPCFIVSLLKRLVDWCLEYCNILGGDINP--------KAHRVFYSGCQAIMYVLCFR 415
+F+ I L L +W Y GD + KA+ VF+S CQ+I Y++ FR
Sbjct: 378 KFVPLSTIKLYLNELSNWANSYI----GDSDQYSSQNGSLKANMVFFSVCQSIFYLIAFR 433
Query: 416 MRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFN 475
+ D+ + L L+PL + LNPL+ CLP+V + F ++ +L N
Sbjct: 434 AK---DLTKDLHFLQLLPLSRIAMSHLNPLRYCLPAVATAFAGVTRTHQLAYCHTVLERN 490
Query: 476 DLLESELSRAFGG-----LERLDMFFPFDPCLLKKSDRF 509
+L+ +G E L+ FFPFDP +LK S+++
Sbjct: 491 --ARRKLATVYGHDKAMPEETLETFFPFDPYMLKLSNKY 527
>gi|170090670|ref|XP_001876557.1| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Laccaria bicolor S238N-H82]
gi|164648050|gb|EDR12293.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 643
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 114/251 (45%), Gaps = 46/251 (18%)
Query: 290 LLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTR 349
+ D ++ TF+ R +F++F+ +LDPE + F ML D S P LTR
Sbjct: 338 IFDRTILRTFK--------SRYTQFLVFWYTSLDPEFADI-FQGMLVDRAFSPTTPELTR 388
Query: 350 MSAVSYLASFLSRARFLSP-------CFIVSLLKRLVDWCLEYCNILGGD-INPKAHRVF 401
+A SY+ SF+SRA F+ + L+ +D E + G D + H VF
Sbjct: 389 AAAASYIGSFVSRATFVDGDGARRVVAVLCEYLQAHLDGVEEAIKLHGDDWVGGAQHAVF 448
Query: 402 YSGCQAIMYVLCFRMRSIMDIPRLKSQLLL-----------MPLETVLKH----DLNPLK 446
Y+ QA+ + CFR R ++ + ++ L +P +VLK LNPLK
Sbjct: 449 YAVAQAVFLIFCFRWRDLLQDADVDDEVGLRSSNVSGKNKWIPELSVLKRVVISVLNPLK 508
Query: 447 VCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFG--------GLERLDMFFPF 498
VC P+VV +F AR+ ++ +LES +G L+ FFPF
Sbjct: 509 VCSPNVVMQF------ARVAHHTDFIYCYTILESNKRSEYGPSPNSIPNSNTTLNTFFPF 562
Query: 499 DPCLLKKSDRF 509
DP L +S+ F
Sbjct: 563 DPYRLPRSNVF 573
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 104/224 (46%), Gaps = 25/224 (11%)
Query: 16 EDVNIS-DLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLD--PDNRALLETSLKAL 72
+D N+ D+ L + V AL G++++++QLV + + P A L + AL
Sbjct: 36 QDQNVRRDMYLAF-VNNALHEKSIGNSESFDQLVNQFNFKSSSNDAPTQPAQLRVWIAAL 94
Query: 73 SGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSN 132
S VS ++ +H +L+ ++ M D + + I L ++ +Y+ L +
Sbjct: 95 SHIVSRLERTH-SALVEALVNMPWTTLDSATVKSYTVFIGMLLSARPEYLSLVLGKIAQG 153
Query: 133 FTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKH 192
FT + P L R+ + R+H L I L+P P+ L P++V+ P H
Sbjct: 154 FT--------HRAP--LTRR-VIYDRLHNLLGHILSLIPTLPSTLQPLLVRHFP-----H 197
Query: 193 ERLKMIV--VYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDM 234
+R +V Y+ N L++ S+ EL +L +VDR I +D+
Sbjct: 198 KRQNQVVQTTYIRNLLRV-STYCPEL-SDKILATIVDRAIQIDV 239
>gi|193674014|ref|XP_001943781.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Acyrthosiphon pisum]
Length = 609
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 113/479 (23%), Positives = 214/479 (44%), Gaps = 63/479 (13%)
Query: 69 LKALSGAVSYIDI-SHHESLLVSIFGMSMW-NYDPDVMDALKGLIISLAASNGKYVDSCL 126
+K L A + ++I + + +L V + + W N DV+ + ++++ + + +
Sbjct: 86 IKLLKDARNCVNILNENLTLFVKVILILKWMNRSDDVVKEYQLFLLNVCTAYSYHTQFAI 145
Query: 127 TMLVSNFTP-PSYFLDKLKEPHGL--ERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQ 183
LV+ F+ S D++ +G+ + + + VH L+++ ++PLA L+ + +
Sbjct: 146 EQLVACFSHVDSTVYDRV---NGMPSQEEERGFKNVHVTLEALLKVIPLAKDLLISALKK 202
Query: 184 RMPTVHN-KHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWD--D 240
+ P N + L Y+ N L + S +R +L ++++L+++D+ I D D
Sbjct: 203 KFPYKTNISYSHLH----YIHNLLYI--SEYEPSLRKNILCLIINKLVEIDVHIPKDALD 256
Query: 241 ILHDDFS---KGIFEMELEDVEEAADDAEQVGDELPSGSL-------------SRKSLSG 284
L + + + IF M+++D ++ +E S +L + S G
Sbjct: 257 RLESNINNEIEDIFPMDVDDGGCMKVCPNKIEEENFSDTLDICLKRLFNYMKTTCHSSDG 316
Query: 285 NLIAELLDSL---MVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVS 341
L+ + SL ++ FE I++V++Y L F T LA+ F +
Sbjct: 317 ILLWDNTKSLYHDLLSIFESEILPTYNSSHIQYVIYYF---------LSFKTTLAENFSN 367
Query: 342 GLYPPLT--------RMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDI 393
L R +A YLASFL RA F++ + + L + WC +Y N + +
Sbjct: 368 WLLKKCCDVSSSSTLRQAAAGYLASFLCRAPFITNNMLKNTLFEMSVWCNKYINSVDKSV 427
Query: 394 NP------KAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKV 447
+ H VFYS CQA+ Y++ FR + +MD R + + L ++ L+PL++
Sbjct: 428 KVVDEELLRWHSVFYSMCQALFYIISFRHQDLMDNKRNLRFMENLNLSNIVTCRLSPLRL 487
Query: 448 CLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKS 506
C VV F +K +L + +V D ++ E L +FPFDP +L +S
Sbjct: 488 CCSKVVDRFALITKTYQL---TYCYVVMDGHIRVTDQSIKD-EWLYSYFPFDPYVLPRS 542
>gi|325186713|emb|CCA21261.1| RNA polymerase Ispecific transcription initiation factor rrn3
putative [Albugo laibachii Nc14]
Length = 988
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 112/486 (23%), Positives = 197/486 (40%), Gaps = 110/486 (22%)
Query: 104 MDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYF----LDKLKEPHGLERKHQVLSR- 158
+ A +++L +S + L MLV N P F LD + SR
Sbjct: 144 ISAYTSFLLNLVSSQSVFAIPTLHMLVRNLARPKDFDSTDLDAF-----------ISSRT 192
Query: 159 --VHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIV--VYMENTLKLESSAMG 214
VH AL+ + ++P + L+ I+ + P H+R+ IV Y+ + +K+ + A
Sbjct: 193 EYVHEALQRVLTIIPTSANVLISILSKSFP-----HKRMAAIVQVTYVRHLMKITNYAPA 247
Query: 215 ELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEME-----------LEDVEEAAD 263
++ ++ VDRL+ +D+EI D+ D + +F M+ +ED++E AD
Sbjct: 248 --LKEQIIALTVDRLVQIDVEIKLDEKDMDTVEEKMFTMDDFLDENLPVGDVEDIDEMAD 305
Query: 264 DA--------EQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFV 315
E +G SG + + A + SL+ FE + +F+
Sbjct: 306 KLDEMMLVMFEYLGQS--SGQVGENDSVTHEAAHIFKSLL-RAFELSILNTHRSKYPQFL 362
Query: 316 MFYACALDPENCGLRFATMLADVFVSGLY--------PPLTRMSAVSYLASFLSRARFLS 367
+FY C ++ + + F+S L P +TR + +YLASFL+RA+++S
Sbjct: 363 LFYVC---------QYHSKFQNAFISHLITACIDPKIPAVTRQNCGAYLASFLARAKYVS 413
Query: 368 PCFIVSLLKRLVDW---------------------CLEYCNILGGDINPKA----HRVFY 402
++ L L+ + ++ N D P A + +F
Sbjct: 414 TTYLEKALYHLLRYLHDQLDIYERSHQSGQASTSVVEKFGNDRAADDRPSASLFHNAIFI 473
Query: 403 SGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKH-DLNPLKVCLPSVVSEFLQQSK 461
S Q + YV+C+R +++ PR L + E + PL C SV EFL ++
Sbjct: 474 STLQTVCYVVCYRGLEMVNAPRGYDFLRSLGWERLFDTISPCPLVFCQQSVTLEFLNVAE 533
Query: 462 AARLFTVSETFVFNDLLE---SELSRAFGGLERLD---------------MFFPFDPCLL 503
+L + + + S L + G + + FFPFDP LL
Sbjct: 534 LFQLISPECAERVDQSISSFGSSLPKNSAGRDSVQSSSHTICNLNWTLSHTFFPFDPYLL 593
Query: 504 KKSDRF 509
++S +F
Sbjct: 594 RRSFKF 599
>gi|198473450|ref|XP_001356293.2| GA17133 [Drosophila pseudoobscura pseudoobscura]
gi|198139462|gb|EAL33356.2| GA17133 [Drosophila pseudoobscura pseudoobscura]
Length = 609
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 107/219 (48%), Gaps = 39/219 (17%)
Query: 312 IEFVMFYACALDPENCGLRFATMLADVFVSGLY--------PPLTRMSAVSYLASFLSRA 363
++FV+F+ C++ + ++ F+S L+ + R +AV Y AS+L+RA
Sbjct: 340 VQFVIFHVCSI---------RSAYSEAFLSSLWLKVQNPNVSAIIRHAAVGYTASYLARA 390
Query: 364 RFLSPCFIVSLLKRLVDWCLEYCNILGGDINP--------KAHRVFYSGCQAIMYVLCFR 415
+F+ I L L +W Y GD + KA+ VF+S CQ+I Y++ FR
Sbjct: 391 KFVPLSTIKLYLNELSNWANSYI----GDSDQYSSQNGSLKANMVFFSVCQSIFYLIAFR 446
Query: 416 MRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFN 475
+ D+ + L L+PL + LNPL+ CLP+V + F ++ +L N
Sbjct: 447 AK---DLTKDLHFLQLLPLSRIAMSHLNPLRYCLPAVATAFAGVTRTHQLAYCHTVLERN 503
Query: 476 DLLESELSRAFGG-----LERLDMFFPFDPCLLKKSDRF 509
+L+ +G E L+ FFPFDP +LK S+++
Sbjct: 504 --ARRKLATVYGHDKAMPEETLETFFPFDPYMLKLSNKY 540
>gi|355717377|gb|AES05913.1| RRN3 RNA polymerase I transcription factor-like protein [Mustela
putorius furo]
Length = 325
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 93/334 (27%), Positives = 140/334 (41%), Gaps = 82/334 (24%)
Query: 179 PIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGW 238
PI+V++ P V L+ Y+ N L++ S +R +L V+++L+ LD+
Sbjct: 1 PILVEKFPFVRKSERTLE---CYVHNLLRI--SVYFPTLRHEILELVIEKLLKLDVNASR 55
Query: 239 DDILH-----------DDFSKGIFEM-ELEDVEEAADDAEQVGDELPSGSLSR------- 279
DI D ++G+F M E ED E A Q D + R
Sbjct: 56 QDIEDAEEAAVQTGSGPDATEGLFNMDEDEDTERDAKADPQGLDHMVHPVAERLDILLSL 115
Query: 280 --------------------KSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYA 319
K L +LI + D L++ T SC ++F MFY
Sbjct: 116 LLSYLKDVCFVDGKVDTNRTKDLYRDLIT-IFDKLLLPTHA---SCH-----VQFFMFYL 166
Query: 320 CALDPENCGLRFATMLADVFVSGLY--------PPLTRMSAVSYLASFLSRARFLSPCFI 371
C+ F A+ F+ L+ P + R +A +Y+ SFL+RA+F+ +
Sbjct: 167 CS---------FKLGFAEAFLEHLWKKLQDPNNPAIIRQAAGNYIGSFLARAKFIPLITV 217
Query: 372 VSLLKRLVDWCLEYCNILGGDINPKA------HRVFYSGCQAIMYVLCFRMRSIMDIPRL 425
S L L++W Y N D KA H FYS CQA+ Y FR + ++ L
Sbjct: 218 KSCLDLLLNWLHRYLN--NQDSGAKAFCDVALHGPFYSACQAVFYTFVFRHKQLLS-GNL 274
Query: 426 KSQLLLMP---LETVLKHDLNPLKVCLPSVVSEF 456
K L + E ++ LNPLK+CLPSVV+ F
Sbjct: 275 KEGLRYLQSLNFERIVMSQLNPLKICLPSVVNFF 308
>gi|452979315|gb|EME79077.1| hypothetical protein MYCFIDRAFT_87461 [Pseudocercospora fijiensis
CIRAD86]
Length = 683
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 122/571 (21%), Positives = 226/571 (39%), Gaps = 111/571 (19%)
Query: 29 VREALTS-VQSGDNDNYNQLVAVMHLSGRLDPDNRA----LLETSLKALSGAVSYIDISH 83
VR A+ + + D+ + + ++ GR D A LL+ + A+SG ++ +
Sbjct: 74 VRSAIDKHLATTDHRDDTPYIKLLDFVGREPADGDAPSTKLLKKYIDAISGRIAVL--GE 131
Query: 84 HESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKL 143
L+++I +S D + + +I L ++ K+V L LVS+F + +L
Sbjct: 132 CSKLVIAILDLSWLGRDDEFVQVYGKFLILLGSTYSKFVSPTLERLVSHFERLPASMGRL 191
Query: 144 KEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYME 203
+ R + +R+HA ++++ + +P+A LL ++ P + + K+ + Y
Sbjct: 192 PYEEPVSRA-IMFARLHATIENLLERIPMASKVLLSQFGRQFP---DDLAKTKIYLQYQR 247
Query: 204 NTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAAD 263
L++ + + ++ ++ ++ RL+++D++I D I E+E + E+
Sbjct: 248 QILQIAN--LNSVLHGGVIELIIRRLVNIDVQIQRD----------IEELEDDAEEQLLQ 295
Query: 264 DAEQVGDELPSGSL-----------------SRKSLSGNLIAEL--LDSLMVLTFEHLES 304
Q GD + + NL ++ +D V+ F+H
Sbjct: 296 KQRQRGDAFGGAEEDDDSEDDSDSESEITVTEEEQMLQNLRLKVANMDGTQVILFQHYHR 355
Query: 305 CEGTG--------------RLIEFVMFYAC----------ALDPENCGLRFATMLADVFV 340
T F+M + C A F +
Sbjct: 356 LFSTNLSPEDNDAYNQLWSHFTSFIMTHRCRHAQFLLFHFAQTSSAYASNFINRCIQITS 415
Query: 341 SGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYC------NILGGDIN 394
+ P R++A +Y+ASF++R +S I S +L D LE +G D
Sbjct: 416 NKTAAPNLRLTACAYVASFVARGSHVSSGLIRSTFMQLAD-LLESLRQTSEPQCIGPD-- 472
Query: 395 PKAHRVFYSGCQAIMYVLCFRMRSIM----------DIPRLKSQLLLMP-----LETVLK 439
K++ ++Y+ QA++Y+ CFR R ++ DI L P L +
Sbjct: 473 RKSYGMYYAIVQALLYMFCFRWRDLVVRDPGDMIEEDILAEGRDLAWFPGVKETLHRNIH 532
Query: 440 HDLNPLKVCLPSVVSEF---------------LQQSKAARLFTVSETFVFNDLL-----E 479
LNPLKVC P +V EF L+++K RL V F + E
Sbjct: 533 SVLNPLKVCSPHIVGEFAKIANHLRFLYVFSLLERNKRIRLSQVPSYFKLGGTIDIGRRE 592
Query: 480 SELSRAFG-GLERLDMFFPFDPCLLKKSDRF 509
+ R G +L+ +FPFDP L S ++
Sbjct: 593 TAFDRKIGEAHHQLEAYFPFDPYHLPLSKKW 623
>gi|321471665|gb|EFX82637.1| putative Tif-IA [Daphnia pulex]
Length = 546
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 111/477 (23%), Positives = 196/477 (41%), Gaps = 39/477 (8%)
Query: 43 NYNQLVAVMHLSGRLDPD-NRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDP 101
Y+QL L+ + DP+ N L L+ ++ ++S + +S + ++ +S P
Sbjct: 61 KYHQL-----LNLKNDPNVNDGFLLLILQQVNSSISLL-TPKVDSFVDALLHISWTTRQP 114
Query: 102 DVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHA 161
V+D + +L +++ Y + MLVS+ T S E+ S VH
Sbjct: 115 SVLDEYVTFLQTLVSAHTFYCRPVVRMLVSHLTLHS----------DCEKS---TSNVHL 161
Query: 162 ALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTL 221
L+ I L+PL+ + + + P + + V Y+ N L+ E+ +
Sbjct: 162 VLRGILQLIPLSQSIIWDSLNDGFPYIGSSSCNQ---VNYIRNLLRF--VEYHEMSGPRV 216
Query: 222 LMAVVDRLIDLDMEIGWDDILHDDFSKGIFEME--LEDVEEAADDAEQVGDELPSGSLSR 279
L ++ R+I LD + +D+L F+ + L E D+ +V EL R
Sbjct: 217 LHLIIGRIIKLDSRVSREDLLQKFNQPMEFDEDTVLNQASETLDEIMKVMFEL----CHR 272
Query: 280 KSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVF 339
K S + M TFE L + ++MFY C+ F L +F
Sbjct: 273 KCHSEWNVHRNFYQDMYATFESLILPAAGIHHVHYLMFYICSTKTA-LYEAFTERLWVIF 331
Query: 340 VSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNIL-----GGDIN 394
++ R S YLASFL RA F+ +++ L R+ W Y +
Sbjct: 332 LTPSSQLNIRKSCADYLASFLGRASFVPMKYVIDCLDRVCQWIHAYLDRQSKGEGAAVFK 391
Query: 395 PKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVS 454
+AH FY+ C YV+ R R I++ +L ++L + L ++ LNPL+ C + V
Sbjct: 392 IRAHAAFYAACHIPFYVVAARHRDIVNDRKLLARLQALDLNRIVNSPLNPLRYCHATTVR 451
Query: 455 EFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRFAN 511
+F + + ++ + N + + A +D +PF+ LL S F +
Sbjct: 452 QFAESASHLQVVFCHTIMIRNQRV--CIPEATTDTFVMDTEYPFEKYLLPSSMDFVS 506
>gi|395329978|gb|EJF62363.1| RNA polymerase I-specific transcription initiation factor RRN3
[Dichomitus squalens LYAD-421 SS1]
Length = 789
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 124/278 (44%), Gaps = 56/278 (20%)
Query: 275 GSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATM 334
G R++ L+A + D ++ TF+ R +FV+F+ +LDPE L +
Sbjct: 441 GKALRRAQFHTLLA-IFDRTILRTFK--------SRYTQFVVFWYSSLDPEFADLFQGML 491
Query: 335 LADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGG--- 391
++ + PP+TR +A SY+ASF+SRA+F+ +++ L ++ ++
Sbjct: 492 VSKALLEEDQPPVTRAAAASYIASFVSRAQFVDREGARRVIQVLCNFLRARLDVFDAMAA 551
Query: 392 ----------DINPKAHRVFYSGCQAIMYVLCFRMRSIMD--------IPRLKSQLLLMP 433
+N H VFY+ QA+ + CFR R +++ P+ MP
Sbjct: 552 AVRQGLVGTSTMNVAQHSVFYAVAQAVFLIFCFRWRDLLEDQEEVDEFAPQQGPPKKWMP 611
Query: 434 ----LETVLKHDLNPLKVCLPSVVSEFLQQSKAARL---FTVSETFVFNDLLESELSRAF 486
++ V+ +LNPLKVC P+VV +F + + A +++ E +D + A
Sbjct: 612 ELDVMQRVVTSELNPLKVCSPNVVMQFARVAHATGFVYCYSIMEANRRSDYAPN----AE 667
Query: 487 GG---------------LERLDMFFPFDPCLLKKSDRF 509
GG L+ FFPFDP L +S +
Sbjct: 668 GGRPLPKPKAIVFEQSVTSELNAFFPFDPYKLPRSGSY 705
Score = 42.7 bits (99), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 95/225 (42%), Gaps = 18/225 (8%)
Query: 22 DLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLD-----PDNRALLETSLKALSGAV 76
D+ L + V AL G +D +++LV + + P L + ALS V
Sbjct: 84 DMHLAF-VNNALQMKAMGISDAFDELVDQFNPRKIIQVIPEAPSPAPQLRLWILALSHVV 142
Query: 77 SYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPP 136
S ++ H L+ +I M D + + I L ++ +Y+ L + T
Sbjct: 143 SRLE-RVHSGLVEAIVNMPWTTMDTSFVKSYTNFIGMLVSARPEYLSLVLGKISQGLTYQ 201
Query: 137 SYFLDKLKE--PHGLER---KHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNK 191
S L L P R + V R+H L+ + LVP P+ L P++ + P H +
Sbjct: 202 SG-LQALDSGLPESSARPLTRRIVYDRIHYLLRHLISLVPTCPSTLQPLLARNFP--HKR 258
Query: 192 HERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEI 236
++ V Y+ N L++ + + +L V+DR I +D+EI
Sbjct: 259 QNQIAQ-VTYIRNLLRV--TEYCPEIADRILALVIDRAIQVDVEI 300
>gi|159470317|ref|XP_001693306.1| predicted protein [Chlamydomonas reinhardtii]
gi|158277564|gb|EDP03332.1| predicted protein [Chlamydomonas reinhardtii]
Length = 263
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 108/211 (51%), Gaps = 13/211 (6%)
Query: 42 DNYNQLVAVMHLSGRLDP-DNRALLETS--LKALSGAVSYIDISHHESLLVSIFGMSMWN 98
D L+A LDP D+ A+L+ S + +++ VS I H++L+ I G+ +W+
Sbjct: 26 DELKGLLAECRKRAELDPADDEAVLQLSTLIASVTANVSAIREGKHQALVSDILGIRVWS 85
Query: 99 YDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKL---KEPHGLERKHQV 155
P V+ A+ +L +N + +C +LV +FTPP + ++P G R +
Sbjct: 86 AAPMVLTAVLEFTRNLVVANAAFSHTCFQLLVYSFTPPPAPPNPNDPSQDPDGPWRPAEQ 145
Query: 156 LSRVHAALKS----IFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESS 211
VH +L S + LVP A T +LP++V +MP H +R +Y+ ++
Sbjct: 146 AVAVHFSLLSVLGRVLGLVPTASTNILPLIVSQMP--HKVRDR-NTQCLYLSALFRIAED 202
Query: 212 AMGELVRSTLLMAVVDRLIDLDMEIGWDDIL 242
G +R LL AVV+ L+ LD+EI W+DI+
Sbjct: 203 RSGAPIREALLTAVVEHLLSLDVEIKWEDIV 233
>gi|195433343|ref|XP_002064674.1| GK23990 [Drosophila willistoni]
gi|194160759|gb|EDW75660.1| GK23990 [Drosophila willistoni]
Length = 627
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 104/217 (47%), Gaps = 32/217 (14%)
Query: 312 IEFVMFYACALDPENCGLRFATMLADVFVSGLY--------PPLTRMSAVSYLASFLSRA 363
++FV+F C+L P A+ F+S L+ + R +AVSY+ASF++R+
Sbjct: 350 VQFVIFQVCSLRP---------AYAEAFLSSLWLKVQNPNVSSIIRHAAVSYMASFMARS 400
Query: 364 RFLSPCFIVSLLKRLVDWCLEYC------NILGGDINPKAHRVFYSGCQAIMYVLCFRMR 417
+FL I L L W L Y N G + KA+ VF+S CQA+ Y++ FR +
Sbjct: 401 KFLPLSTIKFYLTELSKWSLRYIDDTDEYNSQNGSL--KANMVFFSVCQALFYLIAFRAK 458
Query: 418 SIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDL 477
+ + L + L + LNPL+ CLP V + F ++ +L N
Sbjct: 459 DLTAGTKELLFLQSLQLSRLAMCHLNPLRYCLPPVATAFAGITRTHQLAYCHTVLERN-- 516
Query: 478 LESELSRAFGG-----LERLDMFFPFDPCLLKKSDRF 509
+L+ +G E L+ FFPFDP LLK S+++
Sbjct: 517 ARRKLATVYGHDKAMPEETLETFFPFDPYLLKLSNKY 553
>gi|390601104|gb|EIN10498.1| RNA polymerase I-specific transcription initiation factor RRN3
[Punctularia strigosozonata HHB-11173 SS5]
Length = 743
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 123/279 (44%), Gaps = 54/279 (19%)
Query: 275 GSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATM 334
G R++ NL++ + D ++ TF+ R +F++F+ +LDPE L +
Sbjct: 401 GKSRRRAQFYNLLS-IFDRTIIRTFK--------SRYTQFLVFWYSSLDPEFSDLFQGML 451
Query: 335 LADVFVSGLYPPLTRMSAVSYLASFLSRARFLSP-------CFIVSLLKRLVDWCLEYCN 387
L+ + P +TR +A SY+ASF+SRARF+ + + LK +D E
Sbjct: 452 LSKALLETDQPAVTRAAATSYVASFVSRARFVDQDGTRKVVALLCNFLKSQLD-MFEAVE 510
Query: 388 ILGGDINPKAHR-VFYSGCQAIMYVLCFRMRSIMDI------------PRLKSQLLLMPL 434
G + AH+ VFY+ QA+ + CFR R ++ I P + S + L
Sbjct: 511 QTGIGLPSGAHQTVFYAVAQAVFLIFCFRWRDLLAITEEDVDETHESAPPMSSSKWMSEL 570
Query: 435 ---ETVLKHDLNPLKVCLPSVVSEF---------------LQQSKAARLFTVSETFVFND 476
+ V++ LNPLKVC +VV +F ++ +K A T + D
Sbjct: 571 DVMQRVVQSSLNPLKVCSSTVVMQFARVAHATNFVYCYSIIEANKRAEYNTNTTAPTSMD 630
Query: 477 LLESELSRAFGGL------ERLDMFFPFDPCLLKKSDRF 509
+ R + L+ FFPFDP L KS R+
Sbjct: 631 GRRLHVHRRHSDVLSDPLTAELNTFFPFDPYNLPKSSRY 669
>gi|194877714|ref|XP_001973923.1| GG21453 [Drosophila erecta]
gi|190657110|gb|EDV54323.1| GG21453 [Drosophila erecta]
Length = 615
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 104/214 (48%), Gaps = 27/214 (12%)
Query: 312 IEFVMFYACALDPENCGLRFATMLADVFVSGLY--------PPLTRMSAVSYLASFLSRA 363
++F++FYA +L ++ ++ F+ L+ + R +AV Y+ASFLSRA
Sbjct: 341 VQFIIFYATSL---------RSVYSEAFLDSLWVKVQNPNVSAVIRHTAVGYMASFLSRA 391
Query: 364 RFLSPCFIVSLLKRLVDWCLEY---CNILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIM 420
RFL ++ L+ L W Y + + + KA+ VFYS CQA+ Y++ FR R +
Sbjct: 392 RFLPLSSVIFYLRELTKWAHTYIDDSDAYKQNCSLKANLVFYSVCQAVFYLIAFRARDLT 451
Query: 421 DIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLES 480
+ L + L ++ LNPL+ CL V + F ++ +L N
Sbjct: 452 ASSKDLLFLQSLQLSRLVMCHLNPLRYCLAPVATAFAGVTRTYQLAYCHTVLERN--ARR 509
Query: 481 ELSRAFGGL-----ERLDMFFPFDPCLLKKSDRF 509
+L+ +G E L+ FFPFDP +LK S ++
Sbjct: 510 KLATVYGHEKCMPDETLESFFPFDPYVLKLSKKY 543
>gi|405947415|gb|EKC17834.1| RNA polymerase I-specific transcription initiation factor RRN3
[Crassostrea gigas]
Length = 557
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 120/249 (48%), Gaps = 30/249 (12%)
Query: 278 SRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLAD 337
+ K + G+ +E L +++ F C R ++F++F+AC+ F+T
Sbjct: 86 NEKLMGGDNESERLLHALLIAFHESLLCTYKCRCVQFLIFFACS---------FSTRFTS 136
Query: 338 VFVSGLYPPL--------TRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWC----LEY 385
F L + R+++ +YLASFL+RA F+ ++ LK L+ W +E
Sbjct: 137 AFTRFLLHQVGNEQIHAEARIASAAYLASFLARASFVPLSTVLPPLKHLLLWAERYQIET 196
Query: 386 CNILGG---DINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKS--QLLLMPLETVLKH 440
+ LGG ++ H VFY+ Q +Y+LC++ S + P +++ + ++K
Sbjct: 197 ISKLGGAPARLDVALHGVFYAVMQGCLYLLCYK-NSALGKPEAAGDREVIGELVGRIVKG 255
Query: 441 DLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDP 500
LNPLK C +V+ EF + + V++ N+ + + GG RLD FFPFDP
Sbjct: 256 PLNPLKFCQDAVLIEF---ERLGVVQGVADIIAANEGVAIDSRDVHGGENRLDDFFPFDP 312
Query: 501 CLLKKSDRF 509
LLK S +
Sbjct: 313 LLLKVSSTY 321
>gi|295663657|ref|XP_002792381.1| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226279051|gb|EEH34617.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 714
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 108/442 (24%), Positives = 177/442 (40%), Gaps = 94/442 (21%)
Query: 154 QVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAM 213
++ +RVH A I LVP + L P++ P + + K ++Y N +K+ A
Sbjct: 236 EMYARVHMATSYIVQLVPAGSSALSPLIASSFP---HDTDSTKAHIIYTRNIIKIIDYAP 292
Query: 214 GELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAA---DDAEQVGD 270
+RS +L + ++L+ LD++ D D+ ++ EE A +D +
Sbjct: 293 E--LRSEILALITEKLVKLDVQFQVDLEDADEDIDDDNVPDMSSPEEIALCDEDGNESDT 350
Query: 271 ELPSG---------SLSRKSLSGNLIAELLDSLMVLTFEHLES--CEGT----------- 308
E + + ++++ + + +D ++ + FE+ S GT
Sbjct: 351 ETAASDDDDDGMADTETQRAKKRSETKQKIDYMIDILFEYYSSPFTNGTFDEKETANDLL 410
Query: 309 -------------GRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSY 355
R +F++F+ P RFAT + S P + R A +Y
Sbjct: 411 LAHFQTIILPTYRSRHTQFLLFHYSQSSPIFID-RFATTCVQIIFSKSQPTILRQYAAAY 469
Query: 356 LASFLSRARFLSPCFIVSLL----KRLVDWCLEY-CNILGGDINPKAHRVFYSGCQAIMY 410
LASF++R +S + + L EY N G D+ K + FYS QA++Y
Sbjct: 470 LASFVARGARVSSEVVRDVFDLLGTHLQSLQSEYEPNCRGPDL--KRYGPFYSTAQALLY 527
Query: 411 VLCFRMRSIMD-----------------IPRLKSQLLLMP------LETVLKHDLNPLKV 447
+ CFR R + + I L + P L + LNPLKV
Sbjct: 528 IFCFRWRDLTNAALENDLSFPPSSSSPHINNLDLDDVHFPPQIKNLLRRTIYSKLNPLKV 587
Query: 448 CLPSVVSEFLQQSKAARL---FTVSET------FVFNDLLESELSRAFGGLER------- 491
C PS+VSEF + + L + + ET F +L L FG +ER
Sbjct: 588 CSPSIVSEFARLTHHLSLMYIYPLIETNKRLRISSFRNLTTLALESRFGQVEREIKADDD 647
Query: 492 ----LDMFFPFDPCLLKKSDRF 509
LD +FPFDP L +S R+
Sbjct: 648 AGPLLDAYFPFDPYHLPRSRRW 669
>gi|307183418|gb|EFN70240.1| RNA polymerase I-specific transcription initiation factor RRN3
[Camponotus floridanus]
Length = 554
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 121/525 (23%), Positives = 212/525 (40%), Gaps = 95/525 (18%)
Query: 39 GDNDNYNQLVAVMHLSGRLDPDNRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMW- 97
++ Y +L+ + D D L L +S +D H L V I W
Sbjct: 48 SESKEYEKLIYSLKEGAIKDSD----LAKFLSKARQCISLLDTRH--ELFVQIILRIQWT 101
Query: 98 NYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFT---------PPSYFLDKLKEPHG 148
+ +V+ K + L Y+ + + L+ F P F DK
Sbjct: 102 SKSAEVISVYKLFLQDLVCMQTLYIKTVINSLIHLFKSVEDNNAEHKPGEFKDK-----D 156
Query: 149 LERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHN---KHERLKMIVVYMENT 205
+ER L+ +H L I +++P++ LL + + P + + HE +Y+
Sbjct: 157 IER----LNHIHDILHKILEVIPMSSQVLLQSLASQFPYIAHGTYTHE------IYIYAL 206
Query: 206 LKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVE-----E 260
L++ + A +RS +L +++RL LD+ I + D+ + + E V+
Sbjct: 207 LQILNYAPQ--LRSDILSLIINRLTLLDVNIPRKEAKDDEEDDEMNDCTDETVDGDNPTT 264
Query: 261 AADDAEQVGD------------ELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEG- 307
+DA+++ EL + N A ++SL +L + L + E
Sbjct: 265 VNNDADKIKTAPLIVHTMDTCMELFLKYMHEFCFVDN--ALQIESLKILYIDILRAFETI 322
Query: 308 -----TGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLY--------PPLTRMSAVS 354
+ ++F+MFY C+ F ++A+ F L+ P+ R SAV
Sbjct: 323 ILPTHASQYVQFIMFYICS---------FKAIVAETFTDWLWRKVIDPNVAPVIRQSAVC 373
Query: 355 YLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGG----DINPKAHRVFYSGCQAIMY 410
Y+AS L+ A F+S + + +L+ W Y NI D N K+H VFYS CQA +
Sbjct: 374 YIASLLATASFISNGLVKQTMSQLIIWIRNYINIQEYKQYIDDNMKSHVVFYSVCQAFFH 433
Query: 411 VLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARL---FT 467
+ R + ++ L + + ++ LNPLK+C+ +V F + +L +T
Sbjct: 434 LFIARHKEFVNSKNGMLFLQELDIPRIVTCRLNPLKICISEIVHSFADITSTYQLAYCYT 493
Query: 468 VSETFVFNDLLESELSRAFGGLERLDM----FFPFDPCLLKKSDR 508
+ E N L FG L + FFPF+ L+ S +
Sbjct: 494 IIENNERNQL------PIFGMKTHLPVLISNFFPFESYTLQHSRQ 532
>gi|301097238|ref|XP_002897714.1| RNA polymerase I-specific transcription initiation factor rrn3,
putative [Phytophthora infestans T30-4]
gi|262106735|gb|EEY64787.1| RNA polymerase I-specific transcription initiation factor rrn3,
putative [Phytophthora infestans T30-4]
Length = 787
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 111/474 (23%), Positives = 177/474 (37%), Gaps = 110/474 (23%)
Query: 130 VSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVH 189
V+ TP + + + K P ER H L+ + LVP A L PI+ + P
Sbjct: 180 VATPTPVAKVVHEAKGPSLDERIQSRFEAAHETLERVLTLVPTAANVLFPILCEHFP--- 236
Query: 190 NKHERL--KMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHD--- 244
H+R+ V Y+ N L++ G +R +L V+D+L+ +D+EI D+ D
Sbjct: 237 --HKRMDASTQVAYLRNVLRVTGYVSG--LRERVLGLVLDQLVAIDVEIKLDESEEDMFT 292
Query: 245 -----DFSKGIFEMELEDVEEAADDAEQV----------------GDELPSGSLSRKSLS 283
D + V+E AD +Q+ S S++ +
Sbjct: 293 MDDFLDDDMLPPDDASRQVDEMADKLDQMMLVMFEHIEQSAVSSSPTSASSDSVASSTGD 352
Query: 284 GNL---IAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFV 340
NL A L+ ++ FEH + +F++FY C +DP+ DVF+
Sbjct: 353 KNLDVRQAALIFKYLLKVFEHSILNTHRSKYPQFLLFYVCRMDPQ---------FQDVFI 403
Query: 341 SGL--------YPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGD 392
S L PP TR S +YLASFL+RA+++S ++ L L+ W + ++
Sbjct: 404 SQLLATSLDPQTPPTTRQSCGAYLASFLARAKYISVAYLQKALYHLLKWLHDQMDVYDAA 463
Query: 393 INPKAHR------------------------------VFYSGCQAIMYVLCFRMRSIMDI 422
+ R +F S Q + Y++CFR I
Sbjct: 464 HQEQQERDGETAAERDERLLEESENMGITGDRGFQESIFISSLQTVCYMVCFRGLEIATS 523
Query: 423 PRLKSQLLLMPLE----TVLKHDLNPLKVCLPSVVSEFLQQSKAARLFT----------V 468
L L V PL C +V +EFL +A L + +
Sbjct: 524 DDGAGYDFLRSLGWERLLVTSGGYCPLAYCQQTVATEFLNLVEAFDLVSEECLERVDQAI 583
Query: 469 SETFVFNDLLESELSRA-------------FGGLERLDMFFPFDPCLLKKSDRF 509
+ R+ G + L+ FFPFDP LL++S R+
Sbjct: 584 GTVSSSTSKSAKSMERSKKPTAGSASASTLLGQRQPLETFFPFDPYLLRRSFRY 637
>gi|327296541|ref|XP_003232965.1| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Trichophyton rubrum CBS 118892]
gi|326465276|gb|EGD90729.1| hypothetical protein TERG_06956 [Trichophyton rubrum CBS 118892]
Length = 719
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 128/535 (23%), Positives = 213/535 (39%), Gaps = 114/535 (21%)
Query: 65 LETSLKALSGAVSYIDISHHESLLVSIFGMSMW-NYDPDVMDALKGLIISLAASNGKYVD 123
L+ L L G VS +D S S LV S W D + + +L A+ G Y++
Sbjct: 157 LKNHLMGLLGNVSSLDGSC--SGLVHAMLKSEWVGRDTAYVRLFAQFLATLCAARGGYLN 214
Query: 124 SCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQ 183
S L MLV+ L + ++ ++ RVH A++SI +VP L PI+
Sbjct: 215 SVLKMLVNGLQQVDPRCGNLPDYDPVDSS-EMYHRVHYAIRSIAQVVPACSVTLSPILSS 273
Query: 184 RMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDME--IGWDDI 241
P + + +K + Y N +K+ S + EL RS +L + ++L+ +D + + +D+
Sbjct: 274 SFP---HDSDPVKSHLAYTRNLIKI-ISYLPEL-RSDILALITEKLVKIDAQNQVNMEDL 328
Query: 242 LHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGS---------------LSR-KSLSGN 285
D + ++ D A D + ++ L R KS+
Sbjct: 329 DEDS------QQDIMDALNATDPSTLENNDGDDDDDDLDEESEVDEEDPDLQRIKSIKAC 382
Query: 286 LIAELLDSLMVLTFEH---------LESCEGT-----------------GRLIEFVMFYA 319
++ +DS++ + FE+ LE E R +FV+F+
Sbjct: 383 MLK--VDSMVDILFEYYNYPFISGSLEDQEQVLDFLLAHFQSIILPSYRSRHAQFVLFHF 440
Query: 320 CALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLV 379
P RFAT ++ +S P + R A +YLASF++R +S I + L
Sbjct: 441 AQASPIFVD-RFATTCIEIILSKSQPVIIRQYAAAYLASFVARGAHVSGDVIRDVFSLLG 499
Query: 380 DWCLEYCNILGGDI-NPKAHRV--FYSGCQAIMYVLCFRMRSI----------------M 420
L + D P R FYS QA+ Y+ CFR + + +
Sbjct: 500 SHILSLLSSYEADCRGPDLRRYGPFYSTAQALFYIFCFRWKDLTIAAVEAEAEGNSLTHL 559
Query: 421 DIPRLK-SQLLLMPLETVLKHDLNPLKVCLPSVVSEF---------------LQQSKAAR 464
++ + SQ + L + LNPLKVC P +V+EF L+ +K R
Sbjct: 560 NVDEVSFSQEMTNMLHRAIYSKLNPLKVCSPGIVAEFAKITHYFGLLYLYPKLESNKRIR 619
Query: 465 LFTVSETFVFNDLLESELSRAFGGLER-----------LDMFFPFDPCLLKKSDR 508
+ + F + + +G +ER LD +FPFDP + + R
Sbjct: 620 IHS------FRGMSSMAMDTMYGTIERETRADDNLAIQLDDYFPFDPYKMPRGAR 668
>gi|255079730|ref|XP_002503445.1| predicted protein [Micromonas sp. RCC299]
gi|226518712|gb|ACO64703.1| predicted protein [Micromonas sp. RCC299]
Length = 988
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 115/487 (23%), Positives = 180/487 (36%), Gaps = 144/487 (29%)
Query: 29 VREALTSVQSGDNDNYNQLV------AVMHLSGRLDPDNRALLETSLKALSGAVSYIDIS 82
V+ +L V+ G Y +++ A SG DPD +LE L VS +D
Sbjct: 55 VKNSLDGVRGGRRAQYYEVLEALDGLASATPSG--DPDKLLMLEV----LGENVSSLDER 108
Query: 83 HHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASN-GKYVDSCLTMLVSNFTPPSYFLD 141
HE LL + G S+W D+ + ++L +++ G + +CL MLV F PP + +
Sbjct: 109 LHEELLRRVMGTSLWLCHEDIARLVVQFCVNLMSTHTGSMLATCLDMLVEAFLPPRGYPE 168
Query: 142 KLKE---------------------------------PHGLERKH--QVLSRVHAALKSI 166
E P G + + + + A+ I
Sbjct: 169 GRLEDELDAYMRTGQSPSPGADASRGDGEDMDDDESDPKGPPPRSAAETTAMIVGAITQI 228
Query: 167 FDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVV 226
LVPL+ T L I++QR+P H + + Y+ L + G +R LL VV
Sbjct: 229 LTLVPLSATVLGGILLQRIP--HKTAVKARQ-CQYLRAAFALVETPAGRPLRDGLLRGVV 285
Query: 227 DRLIDLDMEIGWDDILHD--------------------DFSKGIFEMELEDVEE------ 260
L+D+D+EI W DI D + + GIF ELED+E+
Sbjct: 286 RHLLDVDVEIRWQDIAPDGDLSDDDETEVEDEEDDGKENGAGGIF--ELEDIEKTIEQEL 343
Query: 261 -----AADDAEQVGDELPSGSLSRKSLSGNLIAE------LLDSLMVLTFEHLESCEGTG 309
A + E GS+ G E ++DS+M L H++ +G
Sbjct: 344 VRQAAAWERGESGAGGARQGSIRSPMHHGGGRDEIEEQIDMIDSMMTLVLAHIDRRIDSG 403
Query: 310 -----------------------RLIEFVMFY-------------------------ACA 321
+ +F++F+ A A
Sbjct: 404 DAAALNECLLKVFVSTLLPAHESKFTQFLVFHACAREAAAKATSPGASLGANGGPHVANA 463
Query: 322 LDPENCGL------RFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLL 375
L E G R L + P R+++ +YLASFL+RA +L P F+ + L
Sbjct: 464 LTGEFDGTAQMLSARIVDQLIGRVTDPIARPAPRLASAAYLASFLARAAWLRPPFLAATL 523
Query: 376 KRLVDWC 382
+RL WC
Sbjct: 524 RRLAHWC 530
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 400 VFYSGCQAIMYVLCFRMRSIMDIPRLKSQ----LLLMPLETVLKHDLNPLKVCLPSVVSE 455
VF S CQ +MYVLC+RM DI R + L MPL +L L PL C+ VV E
Sbjct: 613 VFDSACQTLMYVLCYRMD---DITRHGGEPAETLRSMPLRQILYSRLQPLHTCVSEVVIE 669
Query: 456 FLQQSKAA 463
FL ++ AA
Sbjct: 670 FLVRAAAA 677
>gi|195475784|ref|XP_002090163.1| Tif-IA [Drosophila yakuba]
gi|194176264|gb|EDW89875.1| Tif-IA [Drosophila yakuba]
Length = 615
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 101/216 (46%), Gaps = 23/216 (10%)
Query: 312 IEFVMFYACALDPENCGLRFATMLADVFVSGLY--------PPLTRMSAVSYLASFLSRA 363
++F++FY +L ++ ++ F+ L+ + R +AV Y+ASFLSRA
Sbjct: 341 VQFILFYVTSL---------RSVYSEAFLDSLWLKVQNPNVSAVIRHAAVGYMASFLSRA 391
Query: 364 RFLSPCFIVSLLKRLVDWCLEY---CNILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIM 420
RFLS ++ LK L W Y + + + K + VFYS CQA+ Y++ FR + +
Sbjct: 392 RFLSLSTVIFYLKELTKWAHTYIDDSDAYKHNCSLKTNLVFYSVCQAVFYLIAFRAKDLT 451
Query: 421 DIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARL---FTVSETFVFNDL 477
+ L + L + LNPL+ CL V + F ++ +L TV E L
Sbjct: 452 ASSKDLLFLQSLQLSRLAMCHLNPLRYCLAPVATAFAGVTRTYQLAYCHTVLERNARRKL 511
Query: 478 LESELSRAFGGLERLDMFFPFDPCLLKKSDRFANAT 513
F E L+ FFPFDP +L S ++ A
Sbjct: 512 ATVYGHEKFMPDETLESFFPFDPYVLMLSKKYIEAN 547
>gi|219118065|ref|XP_002179815.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408868|gb|EEC48801.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 723
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 128/514 (24%), Positives = 204/514 (39%), Gaps = 158/514 (30%)
Query: 95 SMWNY-DPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKH 153
SM +Y D D+ DA L+++L ++N ++ LT L S + + + P
Sbjct: 177 SMDDYVDYDIADAQLHLMMALVSANSVFMIPILTSLWSMLS-----FESVDAPF------ 225
Query: 154 QVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAM 213
+ R+HAA+ +I L P A K +V Y+ +E+ +
Sbjct: 226 EQTQRLHAAMATIVRLCPKA----------------------KKVVRYVP---AMEAQVL 260
Query: 214 GELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAADDAEQVGDELP 273
L+ +L M V ++ ++ G + + D+S +F+++++ DA
Sbjct: 261 EFLIEKSLEMDV-----EIKIDEGGEAEIDTDYS--VFQLDMDS------DAH------- 300
Query: 274 SGSLSRKSLSG--------NLIAELLDSLMVLTFEHLE-SCEGTGRLI------------ 312
SL R+ L+ N +AE LDSLM L E++E SC G LI
Sbjct: 301 --SLRRRQLNEVNVQESIVNDMAEKLDSLMFLLLEYVEQSCAGNADLIREKYRILAQFFE 358
Query: 313 ------------EFVMFYAC-----ALDPENCG---------LRFATMLADVFVSGLYPP 346
+F++ + C AL+ +C +FA+ L V V
Sbjct: 359 SSIIITHKSKFVQFLIVHVCGLENKALESASCQNDQSPAILYRKFASSLIHVIVDPYRAT 418
Query: 347 LTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNIL------GGDINPKA--H 398
+TR +A YLASF+SRA F+ + L+ W Y L D + H
Sbjct: 419 VTRQAAACYLASFVSRASFVCEETCCESVCALLRWGEAYMQSLDSLSVHAADAREQCNFH 478
Query: 399 RVFYSGCQAIMYVLCFRMRSIMDIPRLKSQ-----------LLLMP--LETVLKHDLNPL 445
+FY+ QA Y++CFR ++ R ++ L + P ++ H L PL
Sbjct: 479 SLFYTISQAAFYIMCFRGVEAIEFYRKSTKPSSDGFAQPEHLDISPERWTSLCSHPLQPL 538
Query: 446 KVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELS------------RAFGGLER-- 491
+ CL SV +EFL+ SK L V+ L + E + LE+
Sbjct: 539 RYCLESVRNEFLELSKFCHLINA---IVYCQLAQDENNVVKRNKRQVTPIATPATLEKER 595
Query: 492 --------------LDMFFPFDPCLLKKSDRFAN 511
LD FFPFDP LL+KS F +
Sbjct: 596 LSGGVGGLGKGTNPLDSFFPFDPYLLRKSHVFVD 629
>gi|336373654|gb|EGO01992.1| hypothetical protein SERLA73DRAFT_159088 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386470|gb|EGO27616.1| hypothetical protein SERLADRAFT_413954 [Serpula lacrymans var.
lacrymans S7.9]
Length = 776
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 128/263 (48%), Gaps = 37/263 (14%)
Query: 275 GSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATM 334
G R+S L++ + D ++ TF+ R +F++F+ +LDPE L +
Sbjct: 426 GRALRRSQFHTLLS-IFDRTIIRTFK--------SRYTQFLIFWYSSLDPEFSDLFQGML 476
Query: 335 LADVFVSGLYPPLTRMSAVSYLASFLSRARFL---SPCFIVSLLKRLVDWCLEYCNIL-- 389
+ ++ P +TR +A SY+ASF+SRA+F+ ++S+L + L+ +++
Sbjct: 477 VEKALLTQDQPAVTRAAAASYIASFVSRAQFVDRDGTRRVMSVLCTFLQSHLDAFDVILQ 536
Query: 390 -GGDINPKAHR-VFYSGCQAIMYVLCFRMRSIMD--------IPRLKSQLLLMP----LE 435
G ++ AH VFY+ QA+ + CFR R + + + S MP ++
Sbjct: 537 TGQELPSVAHHSVFYAVTQAVFLIFCFRWRDLQEDEGDVDESLGTASSGKKWMPELSIVQ 596
Query: 436 TVLKHDLNPLKVCLPSVVSEFLQQSKA---ARLFTVSETFVFNDLLESELSRAFGGLE-- 490
VL LNPLKVC +VV +F + ++A A +++ E +D + R+ ++
Sbjct: 597 RVLTSLLNPLKVCSSNVVMQFARVAQATDFAYCYSILEVNKRSDYNPTPGQRSRATIDGE 656
Query: 491 ----RLDMFFPFDPCLLKKSDRF 509
L+ FFPFDP L KS +
Sbjct: 657 SLNAELNTFFPFDPYRLPKSSPY 679
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 116/268 (43%), Gaps = 41/268 (15%)
Query: 22 DLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPDN--------RALLETSLKALS 73
DL L + V +AL +G ++ ++QLV + +P N A L + ALS
Sbjct: 78 DLYLAF-VNDALQQKLNGRSEAFDQLV------DQFNPKNIAGDGAVPSAQLRLWIVALS 130
Query: 74 GAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNF 133
+S ++ H +L+ +I M D + + I L ++ +Y+ L + +
Sbjct: 131 HVLSRLE-RRHSALVEAIVNMPWTTMDTVFVKSYTVFIGMLLSARPEYLSLVLGKIAQDL 189
Query: 134 TPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHE 193
T + G + + R+H L+ + L+P P+ L P++V+ P H +
Sbjct: 190 T-----YRHPESSSGPLTRRVIYDRLHYLLQHLLSLIPTLPSTLQPLLVRNFP--HKRQP 242
Query: 194 RLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIG--------WDDILHDD 245
++ V Y+ N L++ + EL +L ++DR I +D+EI D HD+
Sbjct: 243 QVAQ-VAYIRNLLRV-TEYCPELA-DRILATIIDRAIQVDVEIQVELEELEEEDPQDHDE 299
Query: 246 FSKGIFEMELEDV---EEAADDAEQVGD 270
IFE++ D +E D+ E D
Sbjct: 300 ----IFELDPFDTVVGQEGDDEPESESD 323
>gi|392568468|gb|EIW61642.1| RNA polymerase I-specific transcription initiation factor RRN3
[Trametes versicolor FP-101664 SS1]
Length = 785
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 116/264 (43%), Gaps = 47/264 (17%)
Query: 285 NLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLY 344
N + + D ++ TF+ R +F++F+ +LDPE L +++ +
Sbjct: 442 NTLLSIFDRTILRTFK--------SRYTQFIVFWYSSLDPEFADLFQGMLVSKSLLEEDQ 493
Query: 345 PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDW---------CLEYCNILGGDINP 395
P +TR +A SY+ASF+SRA+F+ ++ L D+ + G ++
Sbjct: 494 PAVTRAAAASYIASFVSRAQFVDRDGARRVVAVLCDFLRARLDMFMAAAKAGVQGMHMHV 553
Query: 396 KAHRVFYSGCQAIMYVLCFRMRSIMD--------IPRLKSQLLLMP----LETVLKHDLN 443
H VFY+ QA+ + CFR R +++ P MP +E V+ +LN
Sbjct: 554 AQHSVFYAVAQAVFLIFCFRWRDLLEDVDEVDEFAPAQGPPKKWMPGLDVVERVVASELN 613
Query: 444 PLKVCLPSVVSEFLQQSKAARL---FTVSETFVFNDLLESELSRAFG--------GLE-- 490
PLKVC +VV +F + + A +++ E ++ S A G GL
Sbjct: 614 PLKVCSTNVVMQFARVAHATGFIYCYSIMEANRRSEYAPSTPGAANGAASGRLPKGLRFE 673
Query: 491 -----RLDMFFPFDPCLLKKSDRF 509
L+ FFPFDP L +S +
Sbjct: 674 HSMTAELNTFFPFDPYKLPRSGSY 697
Score = 41.6 bits (96), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 101/240 (42%), Gaps = 17/240 (7%)
Query: 3 VELPIDHAESHEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNR 62
VE PI + ++ D+ L + V AL G +D +++LV + ++ PD
Sbjct: 64 VERPIVTNSRIKQDEQYRKDMHLAF-VNNALQQKSMGISDAFDELVDQFN-PRKITPDAP 121
Query: 63 A---LLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNG 119
+ L L ALS VS ++ H SL+ +I + D I L ++
Sbjct: 122 SPAPQLRLWLLALSHVVSRLE-RVHSSLVEAIVTLPWTTMDTGFARTYTNFIGMLVSARP 180
Query: 120 KYVDSCLTMLVSNFTPPSYFLDKLKE--PHGLER---KHQVLSRVHAALKSIFDLVPLAP 174
+Y+ L + T S L L P + + V R+H L+ + LVP P
Sbjct: 181 EYLSLVLGKIAQGLTYQSG-LQALNAGMPESSSKPLTRRIVYDRIHFLLRHLLSLVPTLP 239
Query: 175 TRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDM 234
+ L P++ + P H + ++ V Y+ N L++ + +L V+DR I +D+
Sbjct: 240 STLQPLLARNFP--HKRQDQTAQ-VTYIRNLLRVTDYC--PEIADRILATVIDRAIQIDV 294
>gi|403413473|emb|CCM00173.1| predicted protein [Fibroporia radiculosa]
Length = 794
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 110/265 (41%), Gaps = 60/265 (22%)
Query: 290 LLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTR 349
L D ++ TF+ R +F++F+ +LD E L +++ + P +TR
Sbjct: 446 LFDRTILRTFK--------SRYTQFLVFWYSSLDAEFSDLFQGMLVSKALLEEDQPAVTR 497
Query: 350 MSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILG------------GDINPKA 397
+A SY+ASF+SRA F+ R V CL CN LG G + P
Sbjct: 498 AAAASYIASFVSRA-----TFVDRESARRVVACL--CNFLGSRLDILDAVTDAGAVPPSM 550
Query: 398 --HRVFYSGCQAIMYVLCFRMRSIMD------------IPRLKSQLLLMPLETVLKHDLN 443
H VFY+ QA+ + CFR R +++ +P K L L+ V+ +LN
Sbjct: 551 SHHSVFYAVAQAVFLIFCFRWRDLLEEHDDVDEFASASVPAKKWMTELEILQRVVMSELN 610
Query: 444 PLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLE------------- 490
PLK+C +VV +F + + A N E A GG +
Sbjct: 611 PLKMCSINVVMQFARVAHATGFIYCYSIMEANRRSEYAPQNASGGSQSGKRGPVVHPSML 670
Query: 491 ------RLDMFFPFDPCLLKKSDRF 509
L+ FFPFDP L +S +
Sbjct: 671 GHSINSELNTFFPFDPYKLPRSGSY 695
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 122/272 (44%), Gaps = 33/272 (12%)
Query: 22 DLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRALLETSLK----ALSGAVS 77
D+ L + V AL ++G +D +++LV + + P+ AL L+ ALS VS
Sbjct: 79 DMYLAF-VNNALQQKKNGISDAFDELVDQFN-PKKSTPEAAALPAQQLQLWILALSHVVS 136
Query: 78 YIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPS 137
++ +H +L+ +I + D + + I L ++ +Y+ L + FT S
Sbjct: 137 RLE-RYHSALVEAIVNVPWTTMDTSFVKSYTSFIGMLVSARPEYLSLVLGKVAHGFTYQS 195
Query: 138 YFLDKLKE--PHGLER---KHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKH 192
L L P R + V R+H L+ + LVP P+ L P++V+ P +K
Sbjct: 196 -GLQALDSGLPTSSSRPLTRRIVYDRIHFLLQHLLSLVPTLPSTLHPLLVRNFP---HKR 251
Query: 193 ERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDIL-------HDD 245
+ V Y+ N LK+ + EL + ++DR I +D+EI + HD
Sbjct: 252 QTQAAQVTYIRNILKV-TEYCPELTEG-IFATIIDRAIQIDVEIQVELEELEEQLASHD- 308
Query: 246 FSKGIFEMELEDV------EEAADDAEQVGDE 271
+ IF+++ D E+A DAE GD+
Sbjct: 309 -QEEIFDLDPFDTVVGQEGEDAESDAESDGDD 339
>gi|219129883|ref|XP_002185107.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403286|gb|EEC43239.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 745
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 128/514 (24%), Positives = 204/514 (39%), Gaps = 158/514 (30%)
Query: 95 SMWNY-DPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKH 153
SM +Y D D+ DA L+++L ++N ++ LT L S + + + P
Sbjct: 177 SMDDYVDYDIADAQLHLMMALVSANSVFMIPILTSLWSMLS-----FESVDAPF------ 225
Query: 154 QVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAM 213
+ R+HAA+ +I L P A K +V Y+ +E+ +
Sbjct: 226 EQTQRLHAAMATIVRLCPKA----------------------KKVVRYVP---AMEAQVL 260
Query: 214 GELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAADDAEQVGDELP 273
L+ +L M V ++ ++ G + + D+S +F+++++ DA
Sbjct: 261 EFLIEKSLEMDV-----EIKIDEGGEAEIDTDYS--VFQLDMDS------DAH------- 300
Query: 274 SGSLSRKSLSG--------NLIAELLDSLMVLTFEHLE-SCEGTGRLI------------ 312
SL R+ L+ N +AE LDSLM L E++E SC G LI
Sbjct: 301 --SLRRRQLNEVNVQESIVNDMAEKLDSLMFLLLEYVEQSCAGNADLIREKYRILAQFFE 358
Query: 313 ------------EFVMFYAC-----ALDPENCG---------LRFATMLADVFVSGLYPP 346
+F++ + C AL+ +C +FA+ L V V
Sbjct: 359 SSIIITHKSKFVQFLIVHVCGLENKALESASCQNDQSPAILYRKFASSLIHVIVDPYRAT 418
Query: 347 LTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNIL------GGDINPKA--H 398
+TR +A YLASF+SRA F+ + L+ W Y L D + H
Sbjct: 419 VTRQAAACYLASFVSRASFVCEETCCESVCALLRWGEAYMQSLDSLSVHAADAREQCNFH 478
Query: 399 RVFYSGCQAIMYVLCFRMRSIMDIPRLKSQ-----------LLLMP--LETVLKHDLNPL 445
+FY+ QA Y++CFR ++ R ++ L + P ++ H L PL
Sbjct: 479 SLFYTISQAAFYIMCFRGVEAIEFYRKSTKPSSDGFAQPEHLDISPERWTSLCSHPLQPL 538
Query: 446 KVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELS------------RAFGGLER-- 491
+ CL SV +EFL+ SK L V+ L + E + LE+
Sbjct: 539 RYCLESVRNEFLELSKFCHLINA---IVYCQLAQDENNVVKRNKRQVTPIATPATLEKER 595
Query: 492 --------------LDMFFPFDPCLLKKSDRFAN 511
LD FFPFDP LL+KS F +
Sbjct: 596 LSGGVGGLGKGTNPLDSFFPFDPYLLRKSHVFVD 629
>gi|391332958|ref|XP_003740893.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Metaseiulus occidentalis]
Length = 588
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 110/502 (21%), Positives = 214/502 (42%), Gaps = 61/502 (12%)
Query: 34 TSVQSGDNDNYNQLVA-VMHLSGRLDPDNRALLETSLKALSGAVSYIDISHHESLLVSIF 92
T N+ + L+A H+ + P + T L L+ S +D ++E L+ +F
Sbjct: 59 TRATRSANEGFRLLLASAKHVVSGVKPHDVISPVTLLTELAKVTSLLD-GYNEILVDELF 117
Query: 93 GMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERK 152
++ + ++ L++ +A SN Y +L+ T ++ E K
Sbjct: 118 KCNILALEDAILTCYLKLLVEMARSNSFYHGEVCRLLLRALT-------TIESEDAPEEK 170
Query: 153 HQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSA 212
+S++H + +++ +P LL + + +P + + V + + L+L
Sbjct: 171 ---ISQIHGSFQTMIKELPRFSESLLKQISRNLPFMTKSWQSQ---VHFYRSMLEL-VDY 223
Query: 213 MGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAADDAEQVGD-- 270
+ E V +L ++ ++IDLD + ++++ +D + F ME + + +G+
Sbjct: 224 VPEEVSLEVLSRLIHKIIDLDCQCPKEEMVSED-DETQFSMETAEDHAVKEMKHSLGNTF 282
Query: 271 ----ELPSGSLSRKSLSGNLIAE-------LLDSLMVLTFEHLESCEGTGRLIEFVMFYA 319
E+ + R + + + + D ++ T++ L I+F++ Y
Sbjct: 283 DRLMEVFFEYIDRHVIDVDDLKRTYRKFLTVFDKFILSTYKCLH--------IQFLLLYI 334
Query: 320 CALDPENCGLRFATMLADVFVSGLY--------PPLTRMSAVSYLASFLSRARFLSPCFI 371
C+ P ++ D F+ L+ P + R AV YL S L R F+ +
Sbjct: 335 CSKRP---------VITDHFIDFLWHKVQNPNTPVVFRQIAVYYLGSLLCRCSFIGVGTL 385
Query: 372 V-SLL---KRLVDWCLEYCNILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKS 427
SLL + L + + + ++ H FYS CQ++ Y + FR + I++
Sbjct: 386 KDSLLLMTRFLHSYVAQSSSAQSLTVDLSKHGTFYSVCQSVFYCIAFRHKEIIEGDDGLG 445
Query: 428 QLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFG 487
L + LE ++ LNPLKV P+V F ++ ++ F N S L A
Sbjct: 446 YLQRLNLEQIVTSPLNPLKVISPAVGIHFANVTRHYQVVYCYAIFERNQ--RSALPMANP 503
Query: 488 GLERLDMFFPFDPCLLKKSDRF 509
G ++LD++FPFDP +L +S RF
Sbjct: 504 GNQKLDVYFPFDPYVLLRSKRF 525
>gi|19114586|ref|NP_593674.1| ribosomal DNA (rDNA) transcription factor Rrn3 [Schizosaccharomyces
pombe 972h-]
gi|1351726|sp|Q10110.1|RRN3_SCHPO RecName: Full=RNA polymerase I-specific transcription initiation
factor rrn3
gi|1122375|emb|CAA92389.1| ribosomal DNA (rDNA) transcription factor Rrn3 [Schizosaccharomyces
pombe]
Length = 599
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 109/211 (51%), Gaps = 23/211 (10%)
Query: 310 RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPC 369
R +F++F+A LDPE + F +L +V + P R+S Y+ S+++RA+ L
Sbjct: 358 RYTQFLIFWASQLDPEFTDI-FLGVLTEVCLDPSQPYTLRLSGAMYIGSYVARAKALEKN 416
Query: 370 ---FIVSLLKRLVDWCLEYC-NILGGDINPKAHRVFYSGCQAIMYVLCFRMRSI------ 419
IV+++ R V+ L+ C N L D+ K H VFY+ Q+I Y+ CFR R +
Sbjct: 417 TIQIIVNMMTRWVEAYLDQCENELSDDLLSK-HSVFYAINQSIFYIFCFRWRELCVSDES 475
Query: 420 --MDIPRLKSQLLLMPL--ETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFN 475
M+ PR + + + +VL LNPL+ C P++V LQ +K A +V++
Sbjct: 476 ESME-PRPNEWIPGLEILHRSVLSR-LNPLRYCSPNIV---LQFAKVANHLNF--MYVYS 528
Query: 476 DLLESELSRAFGGLERLDMFFPFDPCLLKKS 506
+ ++ G + +D +FPFDP L KS
Sbjct: 529 IIEQNRKGIFREGFDTMDAYFPFDPYRLTKS 559
Score = 45.4 bits (106), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 83/173 (47%), Gaps = 20/173 (11%)
Query: 65 LETSLKALSGAVSYIDISHHESLLVSIFGMSMW-NYDPDVMDALKGLIISLAASNGKYVD 123
L+ L AL+ VS +D S + SL++S+ S+W + D + + +L ++ Y+
Sbjct: 95 LQNLLSALTCNVSRLD-SSNSSLVMSVLD-SVWVSRDESFVRCYTRFLGNLISAQSNYLP 152
Query: 124 SCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQ 183
+TML+ + L P L ++ H ALK + +LVP A + L +++
Sbjct: 153 LVMTMLIQHM---------LYRPDSLAIHYE---HAHMALKYVLELVPRAHSFLYSSILE 200
Query: 184 RMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEI 236
P K E L + Y+ N L + ++ +L A++D++I +D+EI
Sbjct: 201 EFPY---KDESLLAQMTYISNVLSICEYVPS--IKGPVLHAIIDKIIQIDVEI 248
>gi|409049799|gb|EKM59276.1| hypothetical protein PHACADRAFT_25394 [Phanerochaete carnosa
HHB-10118-sp]
Length = 746
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 104/241 (43%), Gaps = 47/241 (19%)
Query: 309 GRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSP 368
R +F++F+ +LDPE L +++ + P +TR +A SY+ASF+SRA
Sbjct: 427 SRYTQFLVFWFSSLDPEFSDLFQGMLVSKALLEEDQPTVTRAAAASYIASFVSRA----- 481
Query: 369 CFIVSLLKRLVDWCLEYCNILGGDI-----------NPKA---HRVFYSGCQAIMYVLCF 414
F+ R V CL CN L + NP + H +FY+ QA+ + CF
Sbjct: 482 VFVNRESTRQVVACL--CNFLNNRLDILDAIAQTGTNPPSLAQHSMFYAVTQAVFLIFCF 539
Query: 415 RMRSIMD-------------IPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSK 461
R R ++ K L L L+ V++ DLNPL++C P+VV +F + +
Sbjct: 540 RWRDLVQDQDELDELAGAAGGAHGKWMLELEVLKRVVQSDLNPLRICAPTVVMQFARVAH 599
Query: 462 AARLFTVSETFVFNDLLE-----SELSRAFGG--------LERLDMFFPFDPCLLKKSDR 508
A N E ++ R F L+ FFPFDP L +S
Sbjct: 600 ATDFLYCYSIIEANRRSEYASPNTQAVRRFVNPTVLGESVQTELNTFFPFDPYKLPRSGT 659
Query: 509 F 509
+
Sbjct: 660 Y 660
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 16/173 (9%)
Query: 71 ALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLV 130
ALS VS ++ H +L+ ++ M D + + + + L ++ +Y+ L +
Sbjct: 101 ALSHVVSRLE-RVHSALVGAVISMPWTTMDSNFVRSYTSFVGVLVSAKPEYLTLVLGKIA 159
Query: 131 SNFTPPSYF--LDKLKEPHGLER---KHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRM 185
FT S LD + P R + V R+H L+ + LVP P+ L P++VQ
Sbjct: 160 VGFTYQSGLQALD-VSMPETSSRPLTRRTVYERLHYLLEHLLSLVPTLPSTLQPLLVQNF 218
Query: 186 PTVHNKHERLKMI--VVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEI 236
P H+RL V Y+ N L++ + EL +L ++DR I +D+EI
Sbjct: 219 P-----HKRLSQAAQVTYIRNLLRI-TEYCPEL-SDRILATIIDRAIQIDVEI 264
>gi|346978128|gb|EGY21580.1| RNA polymerase I-specific transcription initiation factor rrn3
[Verticillium dahliae VdLs.17]
Length = 693
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 128/588 (21%), Positives = 235/588 (39%), Gaps = 118/588 (20%)
Query: 24 ELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRAL--------LETSLKALSGA 75
E+ VR+AL G++ +Y+ L + R P + L+ + AL+
Sbjct: 78 EVNMEVRKALEEHLMGEDSDYDNLKEIFANDKRKSPSDLGSDSVVKPQELKLYILALTNC 137
Query: 76 VSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTP 135
V + L+ + +S D + L+ +L ++ G Y+ L+ ++ F+
Sbjct: 138 VPLLKNRACNGLVRNFLQVSWLGRDENFYKVYLQLMAALVSAQGSYLSIVLSTMMEKFSH 197
Query: 136 PSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERL 195
S + E + R+ + R+H AL+ + + P A L ++ + P +
Sbjct: 198 SSSADWSIPEYPSVTRE-AMRERLHGALRYLLKMFPAATPVLRTLISAKFPFADDPQ--- 253
Query: 196 KMIVVYMENTLKLESSAMGELVRSTLLMAVVD----RLIDLDMEIGWD-DILHDDFSKGI 250
+ V Y++N L A+ E V + L + +VD RL+ +D+++ D + L D+ + +
Sbjct: 254 RAHVAYVKNLL-----ALKEYV-TELDLDIVDLILQRLVAIDVQMQVDLEDLDDELTASV 307
Query: 251 FEMELEDVEEAADDAEQVGDELPSG-----------------------SLSRKSLSGNLI 287
+ ++++ GDE+ G +++ N+
Sbjct: 308 AYA----LGKSSNPGSWEGDEMDPGEDKDDDDDDDESVDSDDSDVDDQEAKARTVKSNV- 362
Query: 288 AELLDSLMVLTFEHLES-----------------CEGTGRLI---------EFVMFYACA 321
E LD+++ FE+ + G+ + +F++F+
Sbjct: 363 -EKLDAILDTLFEYYTPHFADPDSDDAYYEYALLVQSFGKFVLPTYKSRHTQFLLFHFGQ 421
Query: 322 LDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVS----LLKR 377
L E F L +F P R +A +YLA F++R + + + LL R
Sbjct: 422 LS-ERLRDTFVGSLMHIFTEQNRPAFVRQAAATYLAGFVARGAHVPGDLVRTIFNLLLAR 480
Query: 378 LVDWCLEY-CNILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDI------PRLKSQLL 430
+ + L + G D+ K H+++YS QAI+YV CFR + ++ P S L
Sbjct: 481 MKSYRLRHDAQSRGPDM--KRHQIYYSMAQAILYVYCFRWKDLVVSVPEHVDPEDASSYL 538
Query: 431 LMPLETV--LKHDL--------NPLKVCLPSVVSEF---------------LQQSKAARL 465
LE + LK +L NPLK+C P++V EF L +++ RL
Sbjct: 539 GHELEWIHGLKEELASHVYCRMNPLKICSPAIVDEFATLAHKLGLMYIFPRLAENQRLRL 598
Query: 466 FT-VSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRFANA 512
VS+T+ L +LD +FPFDP L S R+ +
Sbjct: 599 SQFVSDTYGNGGALRDTGGAQGEEAHQLDPYFPFDPYQLPVSKRWVHG 646
>gi|198427746|ref|XP_002130249.1| PREDICTED: similar to RNA polymerase I-specific transcription
initiation factor RRN3 (Transcription initiation factor
IA) (TIF-IA) [Ciona intestinalis]
Length = 588
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 97/214 (45%), Gaps = 24/214 (11%)
Query: 312 IEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFI 371
++FV+FY C+L ++ F V+ P + R + + Y+AS L+RA ++ +
Sbjct: 317 VQFVVFYICSLK-QSFVESFIEHCWQKVVNPNMPTIVRQTYICYIASLLARATYIPLSTV 375
Query: 372 VSLLKRLVDWCLEYCNILGGDINPKA-------HRVFYSGCQAIMYVLCFRMRSIMDIPR 424
+ + +V W Y + I+P H FYS CQA YV+ F+ I+
Sbjct: 376 TACIDLMVGWAHSYLREVTEFISPDVYHCDITRHGTFYSICQATFYVIIFKHEDILKSKL 435
Query: 425 LKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSR 484
+ L+ ++ LNPLK CL SVVS F + +L V+ D + +R
Sbjct: 436 GHKYFHTLNLQHLIVSPLNPLKACLSSVVSLFTSTMRQHQL-------VYCDTIVERNNR 488
Query: 485 AF---GGLERLDM------FFPFDPCLLKKSDRF 509
G+ L + FFPFDP LLK+S F
Sbjct: 489 QMLPVVGMATLSVKNPLGSFFPFDPYLLKRSSTF 522
Score = 45.8 bits (107), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 39/205 (19%), Positives = 90/205 (43%), Gaps = 11/205 (5%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRALLETSLKALSGAVSYIDISHHESLL 88
+ +AL ++ GD NY+ ++ + DP+ ++ ++S++ ++
Sbjct: 25 ISDALEKLKQGDTSNYHLVLQQLR-----DPNIKSSQIMDWFQEVTSLSHLLDQDQNEIV 79
Query: 89 VSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHG 148
++ + + +V+ + +++L ++N ++ + L N P S + + H
Sbjct: 80 NALLKVRWMEREAEVVSTFRVFVVALVSANSVHLRRVIKSLTQNLIPDSK-SNATQSNHP 138
Query: 149 LERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKL 208
+ ++H K I ++P A +L + Q P + ++ L + Y++N L +
Sbjct: 139 KVTMEDIFEQIHIVFKEILRIIPRASEPMLAVFSQGFPFIRKPNDSL---IWYVKNLLFV 195
Query: 209 ESSAMGELVRSTLLMAVVDRLIDLD 233
S +RS +L V+ LIDLD
Sbjct: 196 TSYQPN--MRSAILELVIKNLIDLD 218
>gi|332017201|gb|EGI57994.1| RNA polymerase I-specific transcription initiation factor RRN3
[Acromyrmex echinatior]
Length = 592
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 110/475 (23%), Positives = 197/475 (41%), Gaps = 86/475 (18%)
Query: 90 SIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKE--PH 147
++ ++ N V+ K + +LA + + + LV F P + ++ +
Sbjct: 126 ALLQINWTNRSSQVIFTYKLFLQNLACMQTFHTNIVINCLVELFKPKNNIEHEIGQFKDE 185
Query: 148 GLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMP--TVHNK--HERLKMIVVYME 203
+ER L+ +H L+ I +VP++ LL + P VH HE +Y+
Sbjct: 186 DVER----LNHIHDILREILRVVPMSNKDLLEALDSNFPFYLVHGTYIHE------IYLY 235
Query: 204 NTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAAD 263
L++ + A +R +L ++ +L+ LD + +++ +D ED+ E
Sbjct: 236 ALLEILNYAPQ--LRRNILSLIIRKLVTLDANVPCEEVNND-----------EDMVEDDC 282
Query: 264 DAEQVGD-----ELPSGSLSRKSLSGNLIAELLDSLMVLTFEHL-ESCEGTG-------- 309
+GD ++ SG KS + + A +LDS + L F+++ E C
Sbjct: 283 INNGIGDNDNLTKINSGI--DKSRTTHPTARILDSCLELFFKYMHEFCFVNDVLQMKNLE 340
Query: 310 --------------------RLIEFVMFYACALDPENCGL--RFATMLADVFV---SGLY 344
R ++++MFY C+ + +F L V +
Sbjct: 341 IMYSDIVYAFEKEILNMYGIRYVQYIMFYMCSFGQLRISIEEKFTNWLWREVVVKPNSTV 400
Query: 345 PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINP-----KAHR 399
PP+ R +AV Y++S L+ A F+SP + +++ +L W +Y I + + H
Sbjct: 401 PPIYRQTAVCYISSLLANASFISPQLVETMIFKLTQWLNKY--ITSQEYSEYIEDYAKHI 458
Query: 400 VFYSGCQAIMYVLCFRMRS-IMDIPRLKS-QLLLMPLETVLKHDLNPLKVCLPSVVSEFL 457
VFYS CQA Y+ R + + D+ K Q L + + ++ LNPLK+C +V F
Sbjct: 459 VFYSVCQAFFYLFVARYKHFVFDLKYEKFLQNLSLSISKIVTCKLNPLKMCDTKIVHAFA 518
Query: 458 QQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDM----FFPFDPCLLKKSDR 508
Q ++ L +N E FG L + FFPF+ L+ S R
Sbjct: 519 QTTRTYGLAYCDSVIEYN---ERNQLPIFGMDSHLPVLIPNFFPFESYTLEHSGR 570
>gi|449549620|gb|EMD40585.1| hypothetical protein CERSUDRAFT_111179 [Ceriporiopsis subvermispora
B]
Length = 738
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 113/270 (41%), Gaps = 46/270 (17%)
Query: 278 SRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLAD 337
+R+ N + + D ++ TF+ R +F++F+ +LDPE L +++
Sbjct: 395 ARRRAQFNTLLSIFDRTILRTFK--------SRYTQFLVFWYSSLDPEFSDLFQGMLVSK 446
Query: 338 VFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA 397
+ P +TR +A SY+ASF+SRA+F+ ++ L ++ +I I A
Sbjct: 447 SLLEEDQPAVTRAAAASYIASFVSRAQFVDRDSTRQVVACLCNFLRNRLDIFDAVIKAGA 506
Query: 398 -------HRVFYSGCQAIMYVLCFRMRSIMD------------IPRLKSQLLLMPLETVL 438
H VFY+ QA+ + CFR R +++ P K L ++ ++
Sbjct: 507 TPPSMAHHSVFYAVAQAVFLIFCFRWRDLLEDQEEVDEYATHGTPSKKWMGELDVIQRMI 566
Query: 439 KHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLE-------- 490
+LNPLKVC +VV +F + + A N + A G +
Sbjct: 567 TSELNPLKVCSANVVMQFARVAHATDFIYCYSIMEANKRSDYANPSATSGSQSSLRATPI 626
Query: 491 -----------RLDMFFPFDPCLLKKSDRF 509
L+ FFPFDP L KS +
Sbjct: 627 YMPRSGDSLTAELNTFFPFDPYKLPKSGSY 656
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 102/222 (45%), Gaps = 15/222 (6%)
Query: 22 DLELVYHVREALTSVQSGDNDNYNQLVAVMH---LSGRLDPDNRALLETSLKALSGAVSY 78
D+ L + V AL +G +D +++LV + +G P L + ALS VS
Sbjct: 50 DMYLAF-VNNALQQKANGVSDAFDELVDQFNPRKFNGEA-PSPIPQLRLWIIALSHVVSR 107
Query: 79 IDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSY 138
++ H +L+ +I M + + + + L ++ +Y+ L + FT S
Sbjct: 108 LE-RPHSALVEAILNMPWTTMESTFVKSYTAFVGMLVSARAEYLSLVLDKVAHGFTYQSG 166
Query: 139 F--LDK-LKEPHGLERKHQVL-SRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHER 194
LD L E H+V+ R+H L+ + LVP P+ L P++V+ P +K +
Sbjct: 167 LQALDAGLPESSSRPLTHRVVYERIHFLLRHLLTLVPTLPSTLHPLLVRHFP---HKRQS 223
Query: 195 LKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEI 236
V Y+ N LK+ + EL +L ++DR I +D+EI
Sbjct: 224 QAAQVTYIRNLLKV-TDYCPELA-DRILATIIDRAIQIDVEI 263
>gi|432952702|ref|XP_004085204.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like, partial [Oryzias latipes]
Length = 273
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 90/192 (46%), Gaps = 18/192 (9%)
Query: 331 FATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNI-- 388
F L V S P + R SA +YL SFL+RA+F+ + + L LV W Y +
Sbjct: 6 FLDHLWRVLQSPSQPVVLRQSAAAYLGSFLARAKFIPMQTVRACLDLLVGWIHGYLDSQE 65
Query: 389 -----LGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKS--QLLLMPLETVLKHD 441
+ D++ H FY+ CQA+ Y L FR R+I++ K L M LE V+
Sbjct: 66 RSDRQVCCDLS--LHGPFYASCQALFYTLVFRHRAILEAGMKKGLEYLQSMNLERVVMSQ 123
Query: 442 LNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER-------LDM 494
LNPLKVCLPSV F ++ ++ N + G + LD
Sbjct: 124 LNPLKVCLPSVAVMFAAVTRKYQVVFCYTILERNSRHALPVVHGSSGRDHVSTNTNPLDS 183
Query: 495 FFPFDPCLLKKS 506
FFPFDP LL++S
Sbjct: 184 FFPFDPYLLRRS 195
>gi|194769629|ref|XP_001966905.1| GF22755 [Drosophila ananassae]
gi|190619862|gb|EDV35386.1| GF22755 [Drosophila ananassae]
Length = 608
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 109/233 (46%), Gaps = 27/233 (11%)
Query: 293 SLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPP------ 346
++++ TF+ + ++FV+F+ +L ++ F+S L+
Sbjct: 319 NILLFTFDEILLPSHNTHHVQFVIFFITSL---------RQTYSEAFLSSLWQKVQNPNV 369
Query: 347 --LTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEY---CNILGGDINPKAHRVF 401
+ R A+ YLASFL+RA+F+ C + L L W Y + + + K++ VF
Sbjct: 370 SAIIRHGAIGYLASFLARAKFVPLCTLTLYLMELSKWAHSYIDDSDEYSQNCSLKSNLVF 429
Query: 402 YSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSK 461
+S CQAI Y++ FR+R + + L + L + NPL+ CL ++ + F ++
Sbjct: 430 FSVCQAIFYLIAFRVRDLTATTKDLLFLQSLQLSRLAMCHFNPLRYCLAAIATAFAGVTR 489
Query: 462 AARLFTVSETFVFNDLLESELSRAFGG-----LERLDMFFPFDPCLLKKSDRF 509
+L N +L+ +G E L+ FFPFDP +LK S+++
Sbjct: 490 TYQLAYCHTVLERN--ARRKLATVYGHEKCMPEETLETFFPFDPYMLKMSNKY 540
>gi|410173215|ref|XP_003960700.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Homo sapiens]
Length = 275
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 85/177 (48%), Gaps = 19/177 (10%)
Query: 345 PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA------H 398
P + R +A +Y+ SFL+RA+F+ + L LV+W Y N D KA H
Sbjct: 102 PAIIRQAAGNYIGSFLARAKFIPLITVKPCLDLLVNWLHIYLN--NQDSGTKAFCNVALH 159
Query: 399 RVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP---LETVLKHDLNPLKVCLPSVVSE 455
FYS CQA+ Y FR + ++ LK L + E ++ LNPLK+CLPSVV+
Sbjct: 160 GPFYSACQAVFYTFVFRHKQLLS-GNLKEGLQYLQSLNFERIVMSQLNPLKICLPSVVNF 218
Query: 456 FLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER-------LDMFFPFDPCLLKK 505
F + +L N+ + R+ G + LD F PFDPC+LK+
Sbjct: 219 FAAITNKYQLVFCYTIIERNNRQMLPVIRSTTGGDSVQTCTNPLDTFVPFDPCVLKR 275
>gi|357518885|ref|XP_003629731.1| hypothetical protein MTR_8g085920 [Medicago truncatula]
gi|355523753|gb|AET04207.1| hypothetical protein MTR_8g085920 [Medicago truncatula]
Length = 115
Score = 81.3 bits (199), Expect = 1e-12, Method: Composition-based stats.
Identities = 38/71 (53%), Positives = 54/71 (76%), Gaps = 1/71 (1%)
Query: 198 IVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELED 257
IV+Y+EN L LES ++GE+V T+L A+VD+LI+LD+EIGWD + +D +K IFEME E+
Sbjct: 11 IVMYVENMLMLESGSIGEIVGGTMLPAIVDKLIELDVEIGWDGKIQED-AKSIFEMEFEE 69
Query: 258 VEEAADDAEQV 268
E DD E++
Sbjct: 70 NAEFEDDGEKI 80
>gi|71005704|ref|XP_757518.1| hypothetical protein UM01371.1 [Ustilago maydis 521]
gi|46096641|gb|EAK81874.1| hypothetical protein UM01371.1 [Ustilago maydis 521]
Length = 864
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 133/558 (23%), Positives = 213/558 (38%), Gaps = 139/558 (24%)
Query: 32 ALTSVQSGDNDNYNQL-VAVMHLSGRLDPDNRALLETSLKALSGAVSYIDISHHESLLVS 90
AL+ + G+ Y +L V S + + L + L ALS VS +D SH + L+ S
Sbjct: 125 ALSEREKGNTGPYYELLVQFAEPSTGRSGASASSLRSLLAALSHVVSDLDRSHAK-LVES 183
Query: 91 IFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTP-----PSYFLDKL-K 144
IF + + D + SL ++ +++ LT + P F D+L K
Sbjct: 184 IFALPWTSMDDSFAQMWIKFVCSLVSARSEWLSVILTKATKALSYRLEWLPYQFADELGK 243
Query: 145 EPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMP--TVHNKHERLKMIVVYM 202
++ QV RVH ++S+ +VP P L P++VQ +P VH + +VY+
Sbjct: 244 RSVSTLKRKQVYERVHLLIRSLLSVVPTLPGVLGPLLVQFLPHKMVHRSDQ-----LVYV 298
Query: 203 ENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELED-VEEA 261
N L + S EL + +L AV+DR I LD+EI + DD ++ ED E+A
Sbjct: 299 RNILHV-SEYCAELSEA-ILGAVIDRAIQLDVEIQVELDEFDDDEAEELGLDFEDPFEQA 356
Query: 262 ---------------------ADDAEQVGDELPSGSLS---RKSLSGNLIAEL------- 290
AD+ + DE ++ +K +L +
Sbjct: 357 LDDIDDGDSSDDDDESDAGDFADNLSDLSDENYEQGVATEEQKRTQEDLQRSMRRIRESV 416
Query: 291 --LDSLMVLTFEHLESCEGT---------------------------------------- 308
LD++M+ FEHL +
Sbjct: 417 AKLDAIMIALFEHLRKLDAQYVAGANSLNYSSPMDSEANRRNLFHTLLSIFARNILPTFR 476
Query: 309 GRLIEFVMFYACALDPENCGLRFATMLADVFVSGLY-------PPLTRMSAVSYLASFLS 361
R ++F++F+ +LDPE +L S P + R +A Y+ASF+S
Sbjct: 477 SRHVQFLLFWFNSLDPEFSDYFLGVLLEKSLYSKRVDMGQKDEPAVIRSAAAGYVASFVS 536
Query: 362 RARFL-SPCFIVSL--LKRLVDWCLE---YCNILGGDINP--KAHRVFYSGCQAIMYVLC 413
RA ++ P V L L +D ++ + G P H VFYS QA Y+ C
Sbjct: 537 RASYVDGPTTRVVLYNLCAFLDAHIDESSRTDTEAGSAAPGTGTHSVFYSVVQAAFYIFC 596
Query: 414 FRMR------------------------------SIMDIPRLKSQLL---LMPLETVLKH 440
FR R S+ + + ++ L L+ +
Sbjct: 597 FRWRDLKITDEEQDGGADDLDYHDADEIGGGMHDSVGSLGQFGAEAWCDGLTSLQRAVTS 656
Query: 441 DLNPLKVCLPSVVSEFLQ 458
LNPLK C +VV +F +
Sbjct: 657 RLNPLKYCSANVVKQFAR 674
>gi|28574300|ref|NP_788084.1| Tif-IA, isoform A [Drosophila melanogaster]
gi|16768904|gb|AAL28671.1| LD10456p [Drosophila melanogaster]
gi|22947075|gb|AAF57260.3| Tif-IA, isoform A [Drosophila melanogaster]
gi|220953122|gb|ACL89104.1| Tif-IA-PA [synthetic construct]
gi|220960008|gb|ACL92540.1| Tif-IA-PA [synthetic construct]
Length = 611
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 107/467 (22%), Positives = 189/467 (40%), Gaps = 94/467 (20%)
Query: 102 DVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHG---------LERK 152
++++A I L ++ +Y+ ++ L+ ++ P +D+ HG L+
Sbjct: 112 EIIEAYTEFCIELMVTHNRYLPIGVSKLIVHWIPGD--MDESDWVHGCPSEHVRNELKPI 169
Query: 153 HQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSA 212
H+VL R+ A+ FD++ A + P + P + Y+ N L L
Sbjct: 170 HKVLDRILTAVPMAFDIIIDAISAKFPYF--KKP--------YHVTAGYLYNVLWL--LE 217
Query: 213 MGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEA--ADDAEQVGD 270
+ + V+ +L+ LD+ D+I E+E+ D EE AD ++ D
Sbjct: 218 YKPIFEELVFQLVLQKLLLLDVNAPKDEI----------ELEMNDEEEKVEADTLFEIDD 267
Query: 271 ELPSGSLSRKSLSGNLIAELLDSLMVLTFEHL------------ESCEGTGRL------- 311
+ + + + LD + L ++ E RL
Sbjct: 268 VCAENVPKSEKSVSHPVGKTLDVCLFLLYKFFDGKCRLNENSSEEQRRTANRLFKMLLYL 327
Query: 312 -------------IEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLT--------RM 350
++F++FYA +L ++ ++ F+ L+ + R
Sbjct: 328 FDEVLLPSHNTHHVQFILFYATSL---------RSVYSEAFLDSLWTKVQNPNVSAVIRH 378
Query: 351 SAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEY---CNILGGDINPKAHRVFYSGCQA 407
+AV Y+ASFLSRARFL + LK L W Y + + + KA+ VFYS CQA
Sbjct: 379 AAVGYMASFLSRARFLPLSTVTFYLKELTRWAHTYIDDSDAYKQNCSLKANLVFYSVCQA 438
Query: 408 IMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFT 467
+ Y++ FR + + + L + L + LNPL+ CL V + F ++ +L
Sbjct: 439 VFYLIAFRAKDLTASSKDLLFLQSLQLSRLAMCHLNPLRYCLAPVATAFAGVTRTYQLAY 498
Query: 468 VSETFVFNDLLESELSRAFGGL-----ERLDMFFPFDPCLLKKSDRF 509
N +L+ +G E L+ FFPFDP +LK S ++
Sbjct: 499 CHTVLERN--ARRKLATVYGHEKCMPDETLESFFPFDPYVLKLSKKY 543
>gi|343427253|emb|CBQ70781.1| related to RRN3-RNA polymerase I specific transcription factor
[Sporisorium reilianum SRZ2]
Length = 856
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 125/528 (23%), Positives = 196/528 (37%), Gaps = 148/528 (28%)
Query: 65 LETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDS 124
L + L ALS VS +D SH + L+ SIF + + D + SL ++ +++
Sbjct: 151 LRSLLAALSHVVSDLDRSHAK-LVESIFALPWTSMDDSFAQMWIKFVCSLVSARSEWLSV 209
Query: 125 CLTMLVSNFTP-----PSYFLDKL-KEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLL 178
LT + P F D+ K ++ QV RVH ++S+ +VP P L
Sbjct: 210 ILTKATKALSYRLEWLPYQFADEASKRSVSTLKRKQVYERVHLLIRSLLSVVPTLPGVLG 269
Query: 179 PIVVQRMP-TVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEI- 236
P++VQ +P + N+ ++L VYM N L + S EL + +L AV+DR I LD+EI
Sbjct: 270 PLLVQFLPHKMVNRSDQL----VYMRNILHV-SEYCAELSEA-ILGAVIDRAIQLDVEIQ 323
Query: 237 --------------GWDDILHDDFSKGI------------------FEMELEDVEEAADD 264
G D D F + + F L D+ +
Sbjct: 324 VELDEFDDDEAEELGLD--FEDPFEQALDDIDDGGSSDDDDSDEGDFADNLSDLSD---- 377
Query: 265 AEQVGDELPSGSLSRKS----LSGNLIAE---LLDSLMVLTFEHLESCEGT--------- 308
E G ++P+ R S I E LD++M+ FEHL +
Sbjct: 378 -ENHGQDVPTEEQKRTQEDLQRSMRRIRESVAKLDAIMIALFEHLRKLDAQYVAGANSLT 436
Query: 309 -------------------------------GRLIEFVMFYACALDPENCGLRFATMLAD 337
R ++F++F+ +LD +L
Sbjct: 437 YNSPMDANTNRRNLFHTLLGIFARNILPTFRSRHVQFLLFWFNSLDANFSDFFLGVLLEK 496
Query: 338 VFVSGL--------YPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEY---- 385
S P + R +A Y+ASF+SRA ++ +L L + +
Sbjct: 497 SLYSKRGGEVGDKDEPAVIRSAAAGYVASFVSRASYVDAHTTRVVLYNLCAYMDAHIDES 556
Query: 386 --CNILGGDINP--KAHRVFYSGCQAIMYVLCFRMR------------------------ 417
+ G P AH VFYS QA Y+ CFR R
Sbjct: 557 SRTDTDAGAAAPGTSAHAVFYSVVQAAFYIFCFRWRDLKVDGQDAGADDLDYQDADEIGG 616
Query: 418 ----SIMDIPRLKSQLL---LMPLETVLKHDLNPLKVCLPSVVSEFLQ 458
S+ + +L ++ L L+ + LNPLK C +VV +F +
Sbjct: 617 GMHDSVGSLGQLGAEAWCDGLTSLQRAVTSRLNPLKFCSANVVKQFAR 664
>gi|46125417|ref|XP_387262.1| hypothetical protein FG07086.1 [Gibberella zeae PH-1]
Length = 688
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 134/573 (23%), Positives = 228/573 (39%), Gaps = 99/573 (17%)
Query: 24 ELVYHVREALTSVQSGDNDNYNQLVAVM------HLSGRLDPDNRAL----LETSLKALS 73
E+ VR AL G++ Y+ L + +L + D+ L L+ + AL+
Sbjct: 79 EVKLEVRTALEEHLRGNDGQYDTLKELFATDKQRYLPPVIGEDDDTLKPHELQVYVVALT 138
Query: 74 GAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNF 133
G V + L+ +I S D + + +L ++ G Y+ LTM+V F
Sbjct: 139 GCVPILKDKACNGLVKTILNCSWLGRDDAFVKVFTHFLAALVSAQGSYLSPVLTMMVGKF 198
Query: 134 TPPSYFLDKLKEPHGLERKHQVL-SRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKH 192
T D P E + + R+H L+ + + P A L ++ + P +
Sbjct: 199 TDSRS--DVWSVPDFPEVNLETMRDRLHRTLQYLLQMFPSALPVLECLLGSKFP-YQDGS 255
Query: 193 ERLKMIVVYMENTLKLES--SAMGELVRSTLLMAVV--DRLIDLDMEIGWDDILHD---D 245
+R+ M Y++N L+++ + + V +L VV D + +D+E G D+I
Sbjct: 256 KRVHM--SYVKNLLRVKDYLPDLRDEVFDLILNRVVKIDSQMQVDLEDGDDEITAAVMYA 313
Query: 246 FSKGIFEMELEDVEEAADDAEQVGDELP---SGSLSRKSLSGNL--IAELLDSLMVLTFE 300
K +F + E+ ++ D E V + P + + KS++ N+ + +LD+L +
Sbjct: 314 LEKQVFTGDWEENDDDDSDTESVDSDDPDYDTEAAKTKSITDNVSKMDAILDTLFEVYTP 373
Query: 301 HLESCEGTGRLIEFVMFYACALDPENCGL-------------RFATM---LADVFVSGLY 344
H ++ G + F MF + E L FA M L D F L
Sbjct: 374 HFDN---PGSDVAFDMFTILLREFEYMVLPTYKSRHTQFLIFHFAQMHDRLTDAFCGQLI 430
Query: 345 PPL--------TRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINP- 395
T+ +A SYLASF++R L I S+ L L + +I P
Sbjct: 431 TTAFKSNTANSTKQAAASYLASFVARGARLPGSLIRSIFGLL----LHHLDIYRKKYEPL 486
Query: 396 ------KAHRVFYSGCQAIMYVLCFRMRSIMDI------PRLKSQLLLMPLE--TVLKHD 441
+ +YS QA +Y+ CFR + ++ + P + + +E + D
Sbjct: 487 CRGPDLRRFHPYYSLVQATLYIFCFRWQDLIVVAPESADPEDPASYIGQEMEWMGTCRRD 546
Query: 442 --------LNPLKVCLPSVVSEF---------------LQQSKAARL--FTVSETFVFND 476
LNPLKVC PS+V EF ++ +K RL + +
Sbjct: 547 LSAQIFGKLNPLKVCAPSIVEEFARIAHRLNFMYIYPLIESNKRIRLSQYLTATYSTGGA 606
Query: 477 LLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
L ++ +LD +FPFDP L S R+
Sbjct: 607 LRDAGYDMQDESFHQLDPYFPFDPYQLPISKRW 639
>gi|300120588|emb|CBK20142.2| unnamed protein product [Blastocystis hominis]
Length = 305
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 88/329 (26%), Positives = 135/329 (41%), Gaps = 72/329 (21%)
Query: 155 VLSRVHAALKSIFDLVPLAPTRL-------LPIVVQRMPTVHNKHERLKMIVVYMENTLK 207
+L+ +H +K I + P + + LP + + T +KH +N L+
Sbjct: 5 LLNIIHNTVKEIIKISPTSSDLIFRSFSINLPFITEE--TYLHKHA--------FKNLLR 54
Query: 208 LESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAADDAEQ 267
L A +R + +V+ LI++D+EI DD+ DD S DA+
Sbjct: 55 LFGYAPS--LRERGFLIIVEWLINVDVEIQVDDV--DDKS----------------DAKS 94
Query: 268 VGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHL----ESCEG---------------- 307
P S + SLS +D +M++ FE+L ES E
Sbjct: 95 KQVFSPRSSDRQNSLSYK-----MDEIMMILFEYLKEQMESIENRKVLFRILQKAFEKFI 149
Query: 308 ----TGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRA 363
+ +F++FY C+ DP RF L D + S P LTR + Y ASF+ RA
Sbjct: 150 MLTHRSKYTQFLIFYVCSYDPSFVE-RFVGRLVDWYCSEESPVLTRQTCCVYCASFICRA 208
Query: 364 RFLSPCFIVSLLKRLVDWCLEYCNILGGDINP-----KAHRVFYSGCQAIMYVLCFRMRS 418
F+S I S+L + W +Y ++ NP H VFYS QA+ Y+LCF +
Sbjct: 209 NFISIDIIRSVLYFSLTWINKYIDMYDVQENPLNPGDTGHLVFYSVMQAVCYILCFTSKR 268
Query: 419 IMDIPRLKSQLLLMPLETVLKHDLNPLKV 447
L +L L+PL+V
Sbjct: 269 FEQEKNGVQFLRSWDWTRILNSPLDPLRV 297
>gi|389633975|ref|XP_003714640.1| hypothetical protein MGG_01654 [Magnaporthe oryzae 70-15]
gi|351646973|gb|EHA54833.1| hypothetical protein MGG_01654 [Magnaporthe oryzae 70-15]
gi|440474551|gb|ELQ43288.1| RNA polymerase I-specific transcription initiation factor rrn3
[Magnaporthe oryzae Y34]
gi|440479746|gb|ELQ60494.1| RNA polymerase I-specific transcription initiation factor rrn3
[Magnaporthe oryzae P131]
Length = 692
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 146/593 (24%), Positives = 229/593 (38%), Gaps = 114/593 (19%)
Query: 11 ESHEMEDVNISDLELVYH-VREALTSVQSGDNDNYNQLVAVM------HLSGRLDPDNRA 63
ES+ D+ + LE VR AL G+ + Y L A+ +L + D
Sbjct: 70 ESNMTVDIGMRTLEETKREVRSALEDRVRGETEGYENLKAIFQNDRQRYLPPIVGDDEDC 129
Query: 64 LLETSL----KALSGAVSYIDISHHESLLVSIFGMSMW-NYDPDVMDALKGLIISLAASN 118
L L ALS +D S + L+ I W D A + +L ++
Sbjct: 130 LKPQELIVYVVALSTCAPMLDRSCSD--LIKIVTKCSWLGRDDGFCKAYTQFLAALISAQ 187
Query: 119 GKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLS-RVHAALKSIFDLVPLAPTRL 177
G ++ L M+V F Y P + R+H L+ + L P A L
Sbjct: 188 GTTLELVLAMIVEKFK--DYRESAWSVPDFPKVSFDTAQDRLHGGLRYLLRLFPAARPVL 245
Query: 178 LPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSA--MGELVRSTLLMAVVDRLIDLDME 235
++ ++ P + E K+ Y++N L L A +G+ ++ +VDRL+ +D++
Sbjct: 246 CSLLAKQFPYLE---ESKKVHTTYVKNLLLLRKYAPDLGQ----DIMELIVDRLVKIDVQ 298
Query: 236 IGWDDILHDDFSKGIFEMELEDVEEAAD--------DAEQVGDELPSGSLSRKSL-SGNL 286
+ +D DD M L E D D E + + ++ +G+
Sbjct: 299 VQFDLDDMDDDLTAAIVMHLGSAREKDDLDIDSDESDGESIASDDSDFDAEATTIETGST 358
Query: 287 IAELLDSLMVLTFEHL----------ESCEGTGRLI----------------EFVMFYAC 320
+ LD++M + FE E+ E G LI +F++F+
Sbjct: 359 TIQKLDAIMDMLFEVYKPSFENPTSDEAKEVLGDLISDFVNLVLPTYKSRHTQFLVFHFS 418
Query: 321 ALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFI---VSLLKR 377
PE L T+ F S P R SA +YLAS+++R + + V LL
Sbjct: 419 QYSPELMDLFVGTLFNMAFESN-RPMALRQSATAYLASYVARGAAVPAEIVRNVVELLCH 477
Query: 378 LVDWCLEYCNILGGDINPKAHRVFYSGC--QAIMYVLCFRMRSIMDI------PRLKSQL 429
VD ++ N G P R + C QA++Y+ CFR R ++ P KS
Sbjct: 478 HVD--VQMRNHADGCRGPDLRRYKHLYCLVQALLYIFCFRWRELVAWAPELVDPSEKSSY 535
Query: 430 LLMPLE----------TVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLE 479
L LE ++ NPL+VC P +V EF ++ R +VF LLE
Sbjct: 536 LGHDLEWIPGFKESMSRIIYSKFNPLRVCSPGIVHEFADHARLLRFM-----YVFP-LLE 589
Query: 480 SE----LSR------AFGGLER-------------LDMFFPFDPCLLKKSDRF 509
S LS+ + GG R L+ +FPFDP L S R+
Sbjct: 590 SNKRIHLSQFASGDYSTGGALRDTCYDPYDESGLQLEAYFPFDPYQLPTSKRW 642
>gi|395756261|ref|XP_003780101.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like, partial [Pongo abelii]
Length = 232
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 81/167 (48%), Gaps = 29/167 (17%)
Query: 312 IEFVMFYACALDPENCGLRFATMLADVFVSGLY--------PPLTRMSAVSYLASFLSRA 363
++F MFY C+ F A+ F+ L+ P + R +A +Y+ SFL+RA
Sbjct: 78 VQFFMFYLCS---------FKLGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARA 128
Query: 364 RFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA------HRVFYSGCQAIMYVLCFRMR 417
+F+ + S L LV+W Y N D KA H FYS CQA+ Y FR +
Sbjct: 129 KFIPLITVRSCLDLLVNWLHIYLN--NQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHK 186
Query: 418 SIMDIPRLKSQLLLMP---LETVLKHDLNPLKVCLPSVVSEFLQQSK 461
++ LK L + E ++ LNPLK+CLPSVV+ F +K
Sbjct: 187 QLLS-GNLKEGLRYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITK 232
>gi|453085584|gb|EMF13627.1| RNA polymerase I-specific transcription initiation factor RRN3,
partial [Mycosphaerella populorum SO2202]
Length = 697
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 137/566 (24%), Positives = 239/566 (42%), Gaps = 102/566 (18%)
Query: 29 VREALTS----VQSGDNDNYNQLVAVMHLSG-RLDPDNRALLETSLKALSGAVSYIDISH 83
VR AL S ++ D+ Y +L+ V+ D LL+ + A+ +S +
Sbjct: 77 VRAALHSHLAPGEAHDDAEYAKLLQVLGEDAYSSDAPTTNLLKKYILAMGSHISVL--GQ 134
Query: 84 HESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKL 143
L++++ +S D + + + LA ++GK+ + LVSNF + +L
Sbjct: 135 CSKLVLAVLDLSWLGRDAEFARIYEEFLRVLANTHGKFTMPMMERLVSNFERLPASMGRL 194
Query: 144 KEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYME 203
++R + R+H + +I VP + LL ++ + P N K + Y
Sbjct: 195 PGEDLIDRT-TMFERLHEVIGTIILRVPSTSSALLRMLKNQFP---NDMSSAKGYLQYQR 250
Query: 204 NTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWD-DILHDDFSKGIFEMELEDVEEAA 262
+ L+L + + E ++ ++ ++ RL+D+D++I D + L DD + + + + AA
Sbjct: 251 HMLRL-AKEIPE-IKGEIMSLIMQRLVDIDVQIQQDIEDLEDDAEERLLQRDHRTPGGAA 308
Query: 263 DDAEQVGDELPSGSLSRKSLSGNLIAEL------LDSLMVLTFEHLESC----------- 305
DD + D+ S S + + EL +D L FEH +
Sbjct: 309 DDDDDSDDDSVSESEMTTTNEEMRLKELRLKVAKMDGTQDLLFEHYQPAFTPKSSPRTND 368
Query: 306 --------------EGTGRLIEFVMF----YACALDPENCGLRFATMLADVFVSGLYPPL 347
R +F++F Y+ A E+ RF D V+ PL
Sbjct: 369 AYQELLSHFNNFIMPHRSRHAQFLLFHFAQYSSAYS-EDFINRFIKRTTDRDVAA---PL 424
Query: 348 TRMSAVSYLASFLSRARFLSPCFIVSL----LKRLVDWCLEYC---NILGGDINPKAHRV 400
R+ A +Y+ASF +RA L P +V L R++D L Y N G D K + +
Sbjct: 425 -RLQACAYVASFTARASHL-PMHLVQRVFAELGRVMD-DLRYMYEPNCHGPD--RKMYGM 479
Query: 401 FYSGCQAIMYVLCFRMRSIMDIPRLK--------SQLLLMPLETVLKHD--------LNP 444
+Y+ QA++Y+ CFR R ++D +L ++ +P +K LNP
Sbjct: 480 YYAIAQALLYIFCFRWRDLVDPTKLGDMTEEDIIAEQRDLPWIAGVKETLNRNIMSALNP 539
Query: 445 LKVCLPSVVSEF---------------LQQSKAARLFTVSETFVFN---DL--LESELSR 484
LKVC P++V EF ++++K RL + + DL E+ R
Sbjct: 540 LKVCSPAIVGEFAKIAWHLRFLYVFSLIERNKRVRLGQAPQLYSLTGGVDLGRRETAWDR 599
Query: 485 AFG-GLERLDMFFPFDPCLLKKSDRF 509
G +L+ +FPFDP L +S R+
Sbjct: 600 KTGDSHHQLEAYFPFDPYHLPQSKRW 625
>gi|406605414|emb|CCH43213.1| RNA polymerase I-specific transcription initiation factor RRN3
[Wickerhamomyces ciferrii]
Length = 635
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 115/271 (42%), Gaps = 52/271 (19%)
Query: 287 IAELLDSLMVLTFEHLESCEGTGRLIE----------------------------FVMFY 318
++E LDS++ L F HLE E +E F++FY
Sbjct: 321 LSEKLDSILSLVFNHLEKYEMNNEDVEEKSIFIYNTLTSLFKSHILPTYYTKSTQFIIFY 380
Query: 319 ACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRL 378
PE F L D+ S R+ ++ YL+S++SRA L ++ +L L
Sbjct: 381 FTQRAPELMD-SFLVTLIDLCFSPEETIEKRIKSLQYLSSYISRANHLQKHQLMFVLSFL 439
Query: 379 VDWCLEYCNI----LGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP- 433
+ W +Y + G IN + ++FYS Q ++Y+ CFR SI+ + +L L
Sbjct: 440 MSWLNKYVEEREIEISGSINMERFKLFYSTFQVLLYIFCFR-HSILKNDDDEWELGLDKF 498
Query: 434 LETVLKHDLNPLKVCLPSVVSEF---------------LQQSKAARLFTVSETFVFNDLL 478
+ +L NPLK C +VV F +Q++K +L +S + N
Sbjct: 499 FQRILITKFNPLKFCNENVVLMFAKIAQQENVAYCFSIIQKNKNEKLKGISGSNSTNTNS 558
Query: 479 ESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
LS+ L+ +FPFDP LK S +F
Sbjct: 559 NQSLSKQ--QFVDLEGYFPFDPLFLKNSKKF 587
>gi|449299200|gb|EMC95214.1| hypothetical protein BAUCODRAFT_149228 [Baudoinia compniacensis
UAMH 10762]
Length = 668
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 139/565 (24%), Positives = 224/565 (39%), Gaps = 118/565 (20%)
Query: 39 GDNDNYNQLVAVMHLSGRLDPDNRALLETSLKALSGAVSYID-----ISHHESLLVSIFG 93
GD + Q + ++ L D D A S K L + ID + L+ ++
Sbjct: 77 GDRRDDTQYIKLLTL---FDHDEDAEEAPSGKLLKKYMLAIDARVSSLGECGKLVSAVLN 133
Query: 94 MSMWNYDPDVMDALKGLII----SLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGL 149
MS D D GL I +LA ++ K++ S + LV++F +L HG
Sbjct: 134 MSWLGRD----DVFAGLFIRFLTTLATAHAKFIPSIMEKLVAHFA-------RLPASHGR 182
Query: 150 ------ERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPT-VHNKHERLKMIVVYM 202
+ + +RVHAA++++ VP A ++ P + KH ++ Y
Sbjct: 183 LPGETPVPRSTMFTRVHAAIRTLLRQVPSAMAAFTRVLRSEFPNDLATKHSYIQ----YQ 238
Query: 203 ENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWD-DILHDDFSKGIFEMELED--VE 259
+ L++ M +L S +L + RL+ +D++I D D ++ + + E
Sbjct: 239 THLLRV-GGYMPQL-ESEVLAILTQRLVSIDVQIQIDIDEFEEEAEDKLLQPSFESRSTR 296
Query: 260 EAADDAEQVGDELPSGSLSRKSLSGNLIAEL------LDSLMVLTFEHLESCEGTGRLIE 313
AADD+E D+ S S + + E+ +D M L FEH S G +E
Sbjct: 297 TAADDSEDSDDDSVSESEETMAEDEQRLKEIKLKIDKMDFTMDLLFEHYASLMKNGLRVE 356
Query: 314 FVMFYACALDPENCGL-----RFATMLADVFVSGL--YPPL-----------------TR 349
F Y L + R A L F L Y R
Sbjct: 357 FNEAYQQLLSHFTTFIFPNRTRHAQFLVFHFSQALPEYASFFARQCLHALGEINRSISQR 416
Query: 350 MSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINP-------KAHRVFY 402
+ A +YLASF++R + + + +L C E +++ P +A+ V+Y
Sbjct: 417 LHACAYLASFVARGVHIPASMVQEIFGQL---CRE-LDLMRKRHEPGCRGPDRRAYSVYY 472
Query: 403 SGCQAIMYVLCFRMR----------------SIMDIPRLKSQLLLMP-----LETVLKHD 441
+ QAI+YV CFR + SI D+ +L +P +E +
Sbjct: 473 AVAQAILYVFCFRWQDLALRVETPEPGDEDASIEDLLAEGRELAWLPGIKETMEKNIHSP 532
Query: 442 LNPLKVCLPSVVSEF---------------LQQSKAARLFTVSETF-VFNDLLESELSRA 485
LNPLKVC P +V EF L+ +K RL S + V N E+ + R
Sbjct: 533 LNPLKVCSPVIVGEFAKLAHHVRFMYVFTKLESNKRVRLGNTSRGYAVDNSRRETAIDRK 592
Query: 486 FGGLE-RLDMFFPFDPCLLKKSDRF 509
G +L+ +FPFDP L S ++
Sbjct: 593 AGEAHLQLEAYFPFDPYRLPLSQKW 617
>gi|340923882|gb|EGS18785.1| RNA polymerase I-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 683
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 131/568 (23%), Positives = 226/568 (39%), Gaps = 105/568 (18%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGRL---DPDNRALLETSLKALSGAVSYIDISHH- 84
V+ AL GD+++Y+ L + + + D D+ + L + Y +
Sbjct: 82 VKHALERHNQGDDEDYDHLKELFAPNPKQSTPDDDDGTKPQDLLAYVVALTGYAPMLGRG 141
Query: 85 -ESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTP-------P 136
L+ SI S D A L+ ++++ LTM+V FT P
Sbjct: 142 CSGLIRSILRCSWLERDETFSRAYIQLLAAISSVQASIFTQVLTMMVDKFTETRHTSSVP 201
Query: 137 SYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLK 196
Y P E K Q L HA LK + +L P +L ++ + P E
Sbjct: 202 GY------APVDPETKKQWL---HAGLKYLLELFPAGQHIILNLISSKFPY---PEESKA 249
Query: 197 MIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELE 256
+ Y+ + L+L+++ EL R + + ++ RL+ LD+E+ D DD +LE
Sbjct: 250 THMEYIGHLLRLKAT-RPELERDIMEL-ILSRLVKLDVEMTLDLENDDDEITRAVLRQLE 307
Query: 257 DVEEAADDAEQVG----------------DELPSGS-----LSRKSLSGNLIAELLDSLM 295
+ +D ++ G DELP + + K + + I +LL S+
Sbjct: 308 ASQTTSDGDDETGDADDDDGSDSDSLLSEDELPEQAKRVLMIKNKLETMDAILDLLFSIY 367
Query: 296 VLTFEHLESCEGTGRLIEFVMFYACALDP-------ENCGLRFA---TMLADVFVSGLY- 344
FE +S + + + ++ + P + +FA L ++F+ L+
Sbjct: 368 TPIFEDPDSPQAIEAFQDLLSDFSNVILPHLKSRHTQYLLFKFAMKSNHLMEMFIGTLFN 427
Query: 345 --PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEY----CNILGGDINPKAH 398
PP+ + +AVSYLASF +R + + +++ +D+ Y N G D+ + +
Sbjct: 428 LAPPVVKQAAVSYLASFTARGASVQSHQVQLIVQTFLDYIDHYRATHTNCRGPDV--RRY 485
Query: 399 RVFYSGCQAIMYVLCFRMRSIM-----------DIPR--LKSQLLLMP-----LETVLKH 440
+Y+ Q ++Y+ CFR R ++ D P + L MP L+ +
Sbjct: 486 SQYYAYFQGLLYIFCFRWRDLIQRDKVPPTLDWDDPSSFIGKDLPWMPGLKSRLQANIAS 545
Query: 441 DLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGG------------ 488
LNPLK C P +V EF + S L + N + LS+ F G
Sbjct: 546 KLNPLKCCSPVIVEEFARLSHHLGLLYIYPQIEKNKSV--HLSQFFTGSYATGGALRDTG 603
Query: 489 -------LERLDMFFPFDPCLLKKSDRF 509
L L+ FPFDP L + R+
Sbjct: 604 LEYDDERLTHLEACFPFDPFQLPVAKRW 631
>gi|322799107|gb|EFZ20560.1| hypothetical protein SINV_14873 [Solenopsis invicta]
Length = 560
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 114/535 (21%), Positives = 224/535 (41%), Gaps = 94/535 (17%)
Query: 29 VREALTSVQSGDN-DNYNQLVAVMHLSGRLDPDNRALLETSLKALSGAVSYIDISHHESL 87
VR L + GD Y +L+ + D D L L +S +D + +ES
Sbjct: 43 VRNILCNFTKGDGIKEYQKLILSLKEGAVKDSD----LAEFLTEARQCISLLD-NKYESF 97
Query: 88 LVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTP---------PSY 138
+ ++ + +V+ K + L +++ + L F P
Sbjct: 98 VQALLQVDWTTRSSEVISIYKLFLQDLVCMQTVHINIVINRLAELFKPVEDVNVEHEAGQ 157
Query: 139 FLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMP-TVHNKHERLKM 197
F DK LER L+ +H L I ++VP++ LL ++ + P VH +
Sbjct: 158 FKDK-----DLER----LNHIHDILHKILEVVPMSNKVLLQALISQFPYIVHGTYTH--- 205
Query: 198 IVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEI----------------GWDDI 241
+Y+ L++ + A +RS +L+ +++RL+ LD+ I ++ I
Sbjct: 206 -EIYVYALLQILNYAPQ--LRSNILLFIINRLMILDVNIPREETNDNEDDVVDDCSYNGI 262
Query: 242 LHDDFSKGIFEMELE-DVEEAADDAEQVGD---ELPSGSLSRKSLSGNLIAELLDSLMVL 297
+D + ++ ++ D +++ + D EL + + +++ ++++ +L
Sbjct: 263 ADND---SLTKINIDTDKQKSVHPIARTMDFCIELFLKYMHEFCFTNDVLQ--IENMRLL 317
Query: 298 TFEHLESCEGT------GRLIEFVMFYACALDPENCGLRFATMLADVFVSGLY------- 344
F+ L + E + ++++MFY C+ P ++A+ F + L+
Sbjct: 318 YFDILCAFETAILPTHASQYVQYIMFYICSFRP---------IIAETFTNWLWHKVTDPN 368
Query: 345 -PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYC----NILGGDINPKAHR 399
P+ R +AV Y++S + A F+SP + + + L W +Y N D + + H
Sbjct: 369 VAPVLRQTAVCYISSLQATASFVSPGLVKNTISNLTIWIHKYITSQENSKYIDDDRQPHV 428
Query: 400 VFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQ 459
VFYS CQA ++ R + ++ L + + ++ LNPLK+C VV +F
Sbjct: 429 VFYSVCQAFFHLFVARYKYFVESNNGILFLQNLDISKIVTCKLNPLKMCDTKVVHDFADI 488
Query: 460 SKAARLFTVSETFVFNDLLESELSR--AFGGLERLDM----FFPFDPCLLKKSDR 508
+ +L + + + +E +R FG L + FFPF+ L+ S R
Sbjct: 489 TSMYQL-----AYCYAIIENNERNRLPIFGMKNELPVLVPNFFPFESYTLEHSGR 538
>gi|402086632|gb|EJT81530.1| hypothetical protein GGTG_01508 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 696
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 138/586 (23%), Positives = 224/586 (38%), Gaps = 122/586 (20%)
Query: 24 ELVYHVREALTSVQSGDNDNYNQLVAVMHLSGR-------------LDPDNRALLETSLK 70
E VR AL GD + Y L +V + L P L +
Sbjct: 83 ETKREVRRALEDRSRGDTEGYEGLKSVFQNDRQRYVAPIVGEEEDCLKPQE---LIVYVV 139
Query: 71 ALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLV 130
ALS +D S + L+ S+ S D A + L ++ G ++ L+M
Sbjct: 140 ALSTCTPLLDKSCSD-LVKSVMRCSWLGRDDAFCKAYTQFLAGLISAQGTTLEMVLSMTT 198
Query: 131 SNFTPPSYFLDKLKEPH----GLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMP 186
F Y P G+E + R+H AL I L P A L ++ + P
Sbjct: 199 EKFK--DYRESAWSVPDFPKVGVELAY---DRLHGALAYILRLFPAARAVLCNLLAKHFP 253
Query: 187 TVHNKHERLKMIVVYMENTLKLESSA--MGELVRSTLLMAVVDRLIDLDMEIGWD-DILH 243
+ E + ++ N L+L A +G+ ++ ++DRL+ +D+++ +D + +
Sbjct: 254 YLE---ESKRAHTSFVNNLLRLRRYAPDLGQ----DIMELIIDRLVKIDVQVQFDLEDMD 306
Query: 244 DDFSKGI-FEMELEDVEEAADDAEQ--------VGDELPSGSLSRKSLSGNLIAELLDSL 294
DD + I +++ +A D A+ D+ + + + SG + LD++
Sbjct: 307 DDVTAAIVLQLDSAKTSDALDPADSDDSDTESIASDDSDFDAEANRIESGATTIQKLDAV 366
Query: 295 MVLTFE------------HLESCEG--------------TGRLIEFVMFYACALDPENCG 328
M FE + C R +F++F+ PE
Sbjct: 367 MDTLFELYKPKFMQPTSDEAKECLADMISDFVNLILPTYKSRHTQFLVFHFSQYAPELMD 426
Query: 329 LRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFI---VSLLKRLVDWCL-- 383
L T+ F S P R SA +YLAS+++R + + V+LL +D +
Sbjct: 427 LFVGTLFNLAFESN-RPMALRQSATAYLASYVARGGLVPADIVQNVVNLLCHHIDGQMRS 485
Query: 384 --EYCNILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMD-IPRLKSQLLLMPLETVLKH 440
E C G D+ H YS QA++Y+ CFR R ++ P + Q L + L H
Sbjct: 486 HMEGCR--GPDLRRYKH--LYSLVQALLYIFCFRWRELVTWAPDIVDQ---EDLSSYLGH 538
Query: 441 DL------------------NPLKVCLPSVVSEF---------------LQQSKAARLFT 467
DL NPLKVC P++V+EF L+ +K L
Sbjct: 539 DLEWIPGFRESMSRMIHSRFNPLKVCSPAIVNEFADLARHLKFMYVYPLLESNKRVHLSQ 598
Query: 468 -VSETFVFNDLLESELSRAFGGLE-RLDMFFPFDPCLLKKSDRFAN 511
VS + L S + +L+ +FPFDP L S R+ N
Sbjct: 599 FVSGDYSTGGALRDTCSDPYDEKALQLEAYFPFDPYQLPISKRWIN 644
>gi|408397915|gb|EKJ77052.1| hypothetical protein FPSE_02696 [Fusarium pseudograminearum CS3096]
Length = 688
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 127/571 (22%), Positives = 226/571 (39%), Gaps = 95/571 (16%)
Query: 24 ELVYHVREALTSVQSGDNDNYNQLVAVM------HLSGRLDPDNRAL----LETSLKALS 73
E+ VR AL G++ Y+ L + +L + D+ L L+ + AL+
Sbjct: 79 EVKLEVRTALEEHLRGNDGQYDTLKELFATDKQRYLPPVIGEDDDTLKPHELQVYVVALT 138
Query: 74 GAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNF 133
G V + L+ +I S D + + +L ++ G Y+ LTM+V F
Sbjct: 139 GCVPILKDKACNGLVKTILNCSWLGRDDAFVKVFTHFLAALVSAQGSYLSPVLTMMVGKF 198
Query: 134 TPPSYFLDKLKEPHGLERKHQVL-SRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKH 192
T D P E + + R+H L+ + + P A L ++ + P +
Sbjct: 199 TDSRS--DVWSVPDFPEVNRETMRDRLHRTLQYLLQMFPSALPVLECLLGSKFP-YQDGS 255
Query: 193 ERLKMIVVYMENTLKLES--SAMGELVRSTLLMAVV--DRLIDLDMEIGWDDILHD---D 245
+R+ M Y++N L+++ + + V +L VV D + +D+E G D+I
Sbjct: 256 KRVHM--SYVKNLLRVKDYLPDLRDEVFDLILNRVVKIDSQMQVDLEDGDDEITAAVMYA 313
Query: 246 FSKGIFEMELEDVEEAADDAEQVGDELP---SGSLSRKSLSGNL--IAELLDSL------ 294
K +F + E+ + D E V + P + + KS++ N+ + +LD+L
Sbjct: 314 LEKQVFTGDWENDDGDDSDTESVDSDDPDYDTEAAKTKSITDNVSKMDAILDTLFEVYTP 373
Query: 295 ----------------MVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADV 338
++ FE++ R +F++F+ + ++
Sbjct: 374 HFDNPGSDVAFDTFTILLREFEYMVLPTYKSRHTQFLIFHFAQMHDRLTDAFCGQLITTA 433
Query: 339 FVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINP--- 395
F S T+ +A SYLASF++R L I S+ L L + +I P
Sbjct: 434 FKSNTANS-TKQAAASYLASFVARGARLPGSLIRSIFGLL----LHHLDIYRKKYEPLCR 488
Query: 396 ----KAHRVFYSGCQAIMYVLCFRMRSIMDI------PRLKSQLLLMPLE--TVLKHD-- 441
+ +YS QA +Y+ CFR + ++ + P + + +E + D
Sbjct: 489 GPDLRRFHPYYSLVQATLYIFCFRWQDLIVVAPESADPEDPASYIGQEMEWMGTCRRDLS 548
Query: 442 ------LNPLKVCLPSVVSEF---------------LQQSKAARL--FTVSETFVFNDLL 478
LNPLKVC PS+V EF ++ +K RL + + L
Sbjct: 549 AQIFGKLNPLKVCAPSIVEEFARIAHRLNFMYIYPLIESNKRIRLSQYLTATYSTGGALR 608
Query: 479 ESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
++ +LD +FPFDP L S R+
Sbjct: 609 DAGYDMQDESFHQLDPYFPFDPYQLPISKRW 639
>gi|325092839|gb|EGC46149.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
Length = 769
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 118/286 (41%), Gaps = 64/286 (22%)
Query: 274 SGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFAT 333
+G++ K +L+ +L++ T+ R +F++F+ P RFAT
Sbjct: 446 NGTVDEKETVHDLLLSHFQTLILPTYR--------SRHTQFLLFHYSQSSPIFID-RFAT 496
Query: 334 MLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDI 393
+ S P + R A +YLASF++R +S +++ + D + L +
Sbjct: 497 TCVQIIFSRSEPTIIRQYAAAYLASFVARGAHVSS----EVVRDVFDLLGTHLQNLQAEY 552
Query: 394 NP-------KAHRVFYSGCQAIMYVLCFRMRSI-----------------------MDIP 423
P K + FYS QA++Y+ CFR R + +D
Sbjct: 553 EPTCRGPDLKRYGPFYSTAQALLYIFCFRWRDLTTAALDADITTTPASSTWLYDLDLDDA 612
Query: 424 RLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAAR---LFTVSET------FVF 474
R Q+ + L + LNPLK+C P++VSEF + + L+T+ ET F
Sbjct: 613 RFPPQIKNV-LSPAINSKLNPLKICSPAIVSEFARLTHHLHFMYLYTLIETNKRIRISSF 671
Query: 475 NDLLESELSRAFGGLER-----------LDMFFPFDPCLLKKSDRF 509
+ FG +ER LD +FPFDP L +S R+
Sbjct: 672 RSRAVLAMQSRFGNVEREIKADDDLGPQLDAYFPFDPYHLPRSRRW 717
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 6/123 (4%)
Query: 113 SLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPL 172
+LAA+ G Y++S L +LV KL + + ++ +RVH A+K + L+P
Sbjct: 247 TLAAARGTYLNSVLRVLVHGLRQAGPRTGKLPG-YAIVYPSEIYARVHMAIKYVIQLIPA 305
Query: 173 APTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDL 232
L P++ P + + K +VY N +K+ A +R+ +L + ++L+ +
Sbjct: 306 GSGALSPLIASSFP---HDTDTAKAHIVYTRNIIKIIDYA--PELRTDILAFITEKLVKI 360
Query: 233 DME 235
D++
Sbjct: 361 DVQ 363
>gi|225562885|gb|EEH11164.1| RNA polymerase I-specific transcription initiation factor RRN3
[Ajellomyces capsulatus G186AR]
Length = 741
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 118/286 (41%), Gaps = 64/286 (22%)
Query: 274 SGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFAT 333
+G++ K +L+ +L++ T+ R +F++F+ P RFAT
Sbjct: 418 NGTVDEKETVHDLLLSHFQTLILPTYR--------SRHTQFLLFHYSQSSPIFID-RFAT 468
Query: 334 MLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDI 393
+ S P + R A +YLASF++R +S +++ + D + L +
Sbjct: 469 TCVQIIFSRSEPTIIRQYAAAYLASFVARGAHVSS----EVVRDVFDLLGTHLQNLQAEY 524
Query: 394 NP-------KAHRVFYSGCQAIMYVLCFRMRSI-----------------------MDIP 423
P K + FYS QA++Y+ CFR R + +D
Sbjct: 525 EPTCRGPDLKRYGPFYSTAQALLYIFCFRWRDLTTAALDADITTTPASSTWLYDLDLDDA 584
Query: 424 RLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAAR---LFTVSET------FVF 474
R Q+ + L + LNPLK+C P++VSEF + + L+T+ ET F
Sbjct: 585 RFPPQIKNV-LSPAINSKLNPLKICSPAIVSEFARLTHHLHFMYLYTLIETNKRIRISSF 643
Query: 475 NDLLESELSRAFGGLER-----------LDMFFPFDPCLLKKSDRF 509
+ FG +ER LD +FPFDP L +S R+
Sbjct: 644 RSRAVLAMQSRFGNVEREIKADDDLGPQLDAYFPFDPYHLPRSRRW 689
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 6/123 (4%)
Query: 113 SLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPL 172
+LAA+ G Y++S L +LV KL + + ++ +RVH A+K + L+P
Sbjct: 219 TLAAARGTYLNSVLRVLVHGLRQAGPRTGKLPG-YAIVYPSEIYARVHMAIKYVIQLIPA 277
Query: 173 APTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDL 232
L P++ P + + K +VY N +K+ A +RS +L + ++L+ +
Sbjct: 278 GSGALSPLIASSFP---HDTDTAKAHIVYTRNIIKIIDYA--PELRSDILALITEKLVKI 332
Query: 233 DME 235
D++
Sbjct: 333 DVQ 335
>gi|330806575|ref|XP_003291243.1| hypothetical protein DICPUDRAFT_81920 [Dictyostelium purpureum]
gi|325078602|gb|EGC32245.1| hypothetical protein DICPUDRAFT_81920 [Dictyostelium purpureum]
Length = 691
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 94/222 (42%), Gaps = 35/222 (15%)
Query: 322 LDPENCGLRFATMLADVFVSGLYPPLT--------RMSAVSYLASFLSRARFLSPCFIVS 373
LDP + A+ F+ L+ L R + +Y+ F+SRA +L P IV
Sbjct: 373 LDPIKTDSNTTIIYAESFIRYLFGKLCNETIHSMHRHACAAYIGGFVSRASYL-PHHIVK 431
Query: 374 LL-KRLVDWCLEYCNILGGDINPKA------HRVFYSGCQAIMYVLCFRMRSIMDIPRLK 426
L+ K L+ + + Y + + NP H +FYS CQ+I Y+ CFR I++I K
Sbjct: 432 LVFKDLLGFAMNYVDRVDVKSNPNVGPDPYNHSLFYSVCQSIYYIFCFRNTIILEISNDK 491
Query: 427 S-----------QLLLMPLETVLKHDLNPLKVCLPSVVSEF--------LQQSKAARLFT 467
Q L + + LNP KVCL SVV +F + Q L T
Sbjct: 492 EDKKNEKQREFWQDLHAAFKKISTSRLNPFKVCLKSVVRQFCCVCLRVGIFQKCTGILKT 551
Query: 468 VSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
+ + S S + D FFPFDP LL S +F
Sbjct: 552 NKNILLSKTTVSSASSAPTVSNNQFDSFFPFDPYLLYHSSKF 593
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 55/270 (20%), Positives = 108/270 (40%), Gaps = 29/270 (10%)
Query: 97 WNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVL 156
W ++ +I+L + + C +L+ F P + K + E+ +
Sbjct: 46 WTQSEQTVNNFVDFLINLVSFKSTFAFECFNILIIAFEPYKIAI-KNQSKVSYEKWELIS 104
Query: 157 SRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGEL 216
+VH + I ++PL+ + L I+V + P H H + Y++N L + + +
Sbjct: 105 MKVHFSFNKILSVIPLSSSILAKIIVNKFP--HKSHPA-DVQHFYLKNALYV--TRYCQS 159
Query: 217 VRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGS 276
+ T++ A + +I +D+ I D E+ D E+ D E G E +
Sbjct: 160 ISQTIISAAISSMIQIDVSISID--------------EMPDDEDLQFDIE--GSETNTA- 202
Query: 277 LSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLR--FATM 334
+ G + A+ LD LM L ++L+ G + +FY + ++ +
Sbjct: 203 ---EEQEGKINAQKLDILMNLMLDYLDVRFGIAKKDSGNIFYFAGCEQQDIQTQDEIFNN 259
Query: 335 LADVFVSGLYPPLTRMSAVSYLASFLSRAR 364
L VF S + P + YL ++ R +
Sbjct: 260 LVKVFDSTVLPTY-KSKYTQYLLFYICRIQ 288
>gi|320582691|gb|EFW96908.1| RNA polymerase I-specific transcription initiation factor, putative
[Ogataea parapolymorpha DL-1]
Length = 523
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 111/498 (22%), Positives = 197/498 (39%), Gaps = 89/498 (17%)
Query: 58 DPD-----NRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLII 112
DPD +L+ ++L + A+ ID +ES D A +
Sbjct: 46 DPDFSGKVYSSLVRSALDRMEKALLKIDWFEYES--------------DDFSRAYSTFLS 91
Query: 113 SLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPL 172
L + K+ + TMLV +FT R+ Q+ S H+ LK I ++P
Sbjct: 92 VLVSGIPKWWNEVATMLVGDFT----------------RREQLDSH-HSTLKYIIQVIPT 134
Query: 173 APTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDL 232
+ + I+ ++ P NK +V Y+ N L L + VR + +V+ I L
Sbjct: 135 STNAIPGILKRQFP---NKTAPKADLVNYVRNLLFL--LGYCDQVRHAVWQLIVENCIKL 189
Query: 233 DMEIGWD----------------------------DILHDDFSKGIFEMELEDVEEAADD 264
D+E+ + + + +++E++ V +
Sbjct: 190 DVELQNELEELDDEDLEEALNSDEEEEDADDADELSDEDEFLDEEEYQVEIQKVSNLSSK 249
Query: 265 AEQVGDEL--PSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACAL 322
+ V L + + ++ LS + L ++L L H+ T R I+++MFY
Sbjct: 250 LDSVMRLLMDSAAPVFKQDLSAGIA--LFNTLATLFKSHVLPTHYT-RCIQYLMFYVAQQ 306
Query: 323 DPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWC 382
P+ F ML D+ + R+ A+ Y++SF++RA+ LS +V ++K L WC
Sbjct: 307 HPDLTD-SFLVMLIDIVFNVNEIGSNRVKAMQYVSSFIARAKSLSKQQLVFVIKYLTSWC 365
Query: 383 LEYC-----NILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETV 437
+ I G + ++ Y Q ++Y+ CFR R + + L +
Sbjct: 366 SVFVAERENEISNGHGGMERFKILYCVFQGLLYIFCFRHRELKNDKDEWELNLDKFFNKL 425
Query: 438 LKHDLNPLKVCLPSVV---SEFLQQSKAARLFTVSETFV---FNDLLESELSRAFGGLER 491
+ NPLK C +VV + QQ F++ E N + + F +
Sbjct: 426 IISGFNPLKYCNETVVLIFARLAQQVDLCYCFSIIERNKRERLNGIKNMQAGSVFESKQE 485
Query: 492 ---LDMFFPFDPCLLKKS 506
L+ +FPFDP +LK+S
Sbjct: 486 FLDLEAYFPFDPLILKRS 503
>gi|443897217|dbj|GAC74558.1| RNA polymerase I transcription factor [Pseudozyma antarctica T-34]
Length = 815
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 129/538 (23%), Positives = 203/538 (37%), Gaps = 161/538 (29%)
Query: 65 LETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDS 124
L + L ALS VS +D SH + L+ SIF + + D + SL ++ +++
Sbjct: 115 LRSLLAALSHVVSDLDRSHTK-LVESIFALPWTSMDEAFAQMWIKFVCSLVSARSEWLSV 173
Query: 125 CLTMLVSNFTP-----PSYFLDK--LKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRL 177
LT + P F D+ + L+RK QV RVH ++S+ +VP P L
Sbjct: 174 ILTKATKALSYRLEWLPYQFADESGKRSASTLKRK-QVYERVHVLIRSLLSVVPTLPGVL 232
Query: 178 LPIVVQRMP--TVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDME 235
P++VQ MP VH + +VY+ N L + S EL + +L AVVDR I LD+E
Sbjct: 233 GPLLVQFMPHKMVHRSDQ-----LVYVRNILHV-SEYCAELSEA-ILGAVVDRAIQLDVE 285
Query: 236 IGWDDILHD---------DFSKGIFEMELEDVEEA---------------ADDAEQVGDE 271
I + D DF + FE L+D+E+ AD+ + DE
Sbjct: 286 IQVELDEFDDDEAEELGLDF-EDPFEQALDDIEDGESSDDDDDDSDDGDFADNLSDLSDE 344
Query: 272 LPSGSLS---RKSLSGNLIAEL---------LDSLMVLTFEHLESCEGT----------- 308
++ +K +L + LD++M+ FEHL +
Sbjct: 345 NYDQGIATEEQKRTQEDLQRSMRRIRESVAKLDAIMIALFEHLRKLDAQYVAGANSLSFL 404
Query: 309 ---------------------------------GRLIEFVMFYACALDPENCGLRFATML 335
R ++F++F+ +LD E +L
Sbjct: 405 ATSASPMDADTNRRNLFHTMLSIFARNILPTFRSRHVQFLLFWFNSLDAEFSDYFLGVLL 464
Query: 336 ADVFVSGLY-------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNI 388
S P + R +A Y+ASF+SRA ++ R+V + L C
Sbjct: 465 EKSLYSRRVALSDKEEPAVIRSAAAGYVASFVSRA-----SYVDGATTRVVLYNL--CAF 517
Query: 389 LGGDINPKA---------------HRVFYSGCQAIMYVLCFRMR---------------- 417
+ I+ + H VFYS QA Y+ CFR R
Sbjct: 518 MDAHIDESSRSDTEAGAAPPGASAHAVFYSVVQAAFYIFCFRWRELKISHDEHEGGVGDM 577
Query: 418 --------------SIMDIPRLKSQLL---LMPLETVLKHDLNPLKVCLPSVVSEFLQ 458
S+ + +L ++ L L+ + LNPLK C +VV +F +
Sbjct: 578 DYQDADEIGGGMHSSVGSLAQLGAESWCDGLTSLQRAVTSRLNPLKYCSANVVKQFAR 635
>gi|226287397|gb|EEH42910.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 742
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 119/285 (41%), Gaps = 61/285 (21%)
Query: 274 SGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFAT 333
+G+ K + +L+ ++++ T+ R +F++F+ P RFAT
Sbjct: 424 NGTFDEKETANDLLLAHFQTIILPTYR--------SRHTQFLLFHYSQSSPIFID-RFAT 474
Query: 334 MLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLL----KRLVDWCLEY-CNI 388
+ S P + R A +YLASF++R +S + + L EY N
Sbjct: 475 TCVQIIFSKSQPTILRQYAAAYLASFVARGARVSSEVVRDVFDLLGTHLQSLQSEYEPNC 534
Query: 389 LGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP--------------- 433
G D+ K + FYS QA++Y+ CFR R + + L+S L P
Sbjct: 535 RGPDL--KRYGPFYSTAQALLYIFCFRWRDLTNAA-LESDLSFPPSSSPPHINNLDLDDV 591
Query: 434 ---------LETVLKHDLNPLKVCLPSVVSEFLQQSKAARL---FTVSET------FVFN 475
L + LNPLKVC PS+VSEF + + L + + ET F
Sbjct: 592 HFPPQIKNLLRRTIYSKLNPLKVCSPSIVSEFARLTHHLSLMYIYPLIETNKRLRISSFR 651
Query: 476 DLLESELSRAFGGLER-----------LDMFFPFDPCLLKKSDRF 509
+L L FG +ER LD +FPFDP L +S R+
Sbjct: 652 NLTTLALESRFGQVEREIKADDDAGLLLDAYFPFDPYHLPRSRRW 696
>gi|358378017|gb|EHK15700.1| hypothetical protein TRIVIDRAFT_56258 [Trichoderma virens Gv29-8]
Length = 688
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 122/575 (21%), Positives = 229/575 (39%), Gaps = 101/575 (17%)
Query: 24 ELVYHVREALTSVQSGDNDNYNQLVAVM------HLSGRLDPDNRAL----LETSLKALS 73
E+ VR AL + GD+ Y+ L + +L + + L L+ L AL+
Sbjct: 77 EIKLEVRMALEAHLRGDDGQYDGLKEMFANDKKRYLPPVVGEEEDTLKPHELQVYLMALT 136
Query: 74 GAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNF 133
G + + L+ I S D + + +L ++ G Y++ LTM+V F
Sbjct: 137 GCIPILKSKDCNGLVKVILNCSWLGRDAAFVKVFTHFLAALVSAQGSYLNQVLTMIVDKF 196
Query: 134 --TPPSYFLDKLKEPHGLE-RKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHN 190
T PS + + P E +H + R+H+ L+ + + P A L ++ + P + +
Sbjct: 197 HDTRPSAW----RVPDFPEISRHTMRERLHSTLQYLLKMFPSAIAVLENLLRSKFPFLDD 252
Query: 191 KHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWD-DILHDDFSKG 249
+++ + Y+ N L+++ ++ + ++DR++ +D ++ D + DD +
Sbjct: 253 S---MRVHMAYIHNLLQVKEYVPD--LQEDVFDMILDRVVKIDSQMQLDLEDTDDDITAA 307
Query: 250 IFEMELEDVEEAADDAEQVGDE-------------LPSGSLSRKSLSGNL--IAELLDSL 294
+ E+ +E A E D+ ++ K+L ++ + +LD+L
Sbjct: 308 VMYALRENRQEEAGSWEDEADDDSDTESVDSDDVDYDQEAVRIKTLKDSVEKMDSMLDTL 367
Query: 295 ------------------MVLT----FEHLESCEGTGRLIEFVMFYACALDPENCGLRFA 332
M +T F+ + R +F++F+
Sbjct: 368 FDVYTPHFTNPGSDKAFDMFITILREFDQMVLPTYKSRHTQFLIFHFAQQHERLTDAFCG 427
Query: 333 TMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNIL--- 389
++A F S P + + +A +YLASF++R + + ++ L+ +Y
Sbjct: 428 QLIASAFQSNT-PNILKQAAAAYLASFVARGALVPRSLVRTIFMLLIHHLDQYRRKYEPL 486
Query: 390 --GGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDI------PRLKSQLLLMPLETV--LK 439
G D+ K +YS QA +Y+ CFR + ++ P + + LE + +
Sbjct: 487 CRGPDL--KRFHPYYSLLQATLYIFCFRWQDLVVSAPEFVDPEDPASYIGQDLEWIGTTR 544
Query: 440 HDL--------NPLKVCLPSVVSEF---------------LQQSKAARL--FTVSETFVF 474
DL NPLKVC P +V EF ++ +K RL F S
Sbjct: 545 KDLSTHVFGKLNPLKVCAPVIVDEFAKLAHRLNFMYAYPLIESNKRIRLTQFLSSTYSTG 604
Query: 475 NDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
L +S +LD +FPFDP L S R+
Sbjct: 605 GALRDSGFDTQEESFHQLDPYFPFDPYQLPVSKRW 639
>gi|310790661|gb|EFQ26194.1| RNA polymerase I specific transcription initiation factor RRN3
[Glomerella graminicola M1.001]
Length = 689
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 126/579 (21%), Positives = 235/579 (40%), Gaps = 104/579 (17%)
Query: 24 ELVYHVREALTSVQSGDNDNYNQLV-AVMHLSGRLDPDNRALLETSLK---------ALS 73
E+ VR+AL G++++Y+ L + R P E +LK AL+
Sbjct: 77 EVNAEVRKALEEHLMGEDEDYDVLKEKFTNDKRRYLPPIAGEEEDTLKPHELKGYVLALT 136
Query: 74 GAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNF 133
V + L+ + +S D D + +L ++ G Y+ L+M+V F
Sbjct: 137 SCVPLLKNKACNGLVREVLQVSWLGRDEDFFKVYIQFLAALVSAQGSYLTHVLSMIVEKF 196
Query: 134 TPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHE 193
+ + + + R + R+H L+ I + P A L ++ + P +
Sbjct: 197 SQSRQSEWSVSDFPPVSRV-TMRERLHTGLQYILQMFPAATPVLRNLLDSKFPFDDDPK- 254
Query: 194 RLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDD------------- 240
+M V Y+ N L+L+ A GEL ++ ++ RL+ +D+++ D
Sbjct: 255 --RMFVAYVNNLLRLKEYA-GEL-DLDIIDVLLSRLVKIDVQMQTDLDDLDDDLTASVAY 310
Query: 241 ILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSRKS--LSGNLIAELLDSLMVLT 298
L +E + + V++ +D+ D+ K + GN+ E LD+++
Sbjct: 311 ALGKSLGTSSWEGDEDAVDKDSDEESVESDDSDFDDQEEKIRIVKGNV--EKLDAILDTL 368
Query: 299 FEHLES-----------------CEGTGRLI---------EFVMFYACALDPENCGLR-- 330
F+H + G+++ +F++F+ + + LR
Sbjct: 369 FDHYTPLFENPDSDQAWERYALLVQSFGKIVLPTYKSRHTQFLLFHFGQM---SARLRDT 425
Query: 331 FATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVS----LLKRLVDWCLEY- 385
F L +F S P R +A +YLA F++R + + + LLK++ + +++
Sbjct: 426 FVGSLMHIFGSQNRPSFVRQAAATYLAGFMARGAHVPSDLVRTVFALLLKQMQIYRVKHD 485
Query: 386 CNILGGDINPKAHRVFYSGCQAIMYVLCFRMRS-IMDIPRLKS---------------QL 429
+ G D+ + H+++Y+ QA +Y+ CFR R I+ P Q
Sbjct: 486 PDARGPDL--RRHQIYYAQVQAALYMFCFRWRDLIVSTPEFVDRDDPASYLGHELEWMQG 543
Query: 430 LLMPLETVLKHDLNPLKVCLPSVVSEF---------------LQQSKAARLFT-VSETFV 473
+ L + +NPLK+C P++V EF ++++K RL VS+T+
Sbjct: 544 MREELSASVYCKMNPLKICAPAIVEEFATLAHKLGLMYIFPRVEENKRIRLSQFVSDTYG 603
Query: 474 FNDLLESELSRAFG-GLERLDMFFPFDPCLLKKSDRFAN 511
L S A +LD +FPFDP L S R+
Sbjct: 604 TGGALRDTGSGAQDEEAYQLDPYFPFDPYQLPVSKRWVQ 642
>gi|225677866|gb|EEH16150.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 657
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 119/285 (41%), Gaps = 61/285 (21%)
Query: 274 SGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFAT 333
+G+ K + +L+ ++++ T+ R +F++F+ P RFAT
Sbjct: 339 NGTFDEKETANDLLLAHFQTIILPTYR--------SRHTQFLLFHYSQSSPIFID-RFAT 389
Query: 334 MLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLL----KRLVDWCLEY-CNI 388
+ S P + R A +YLASF++R +S + + L EY N
Sbjct: 390 TCVQIIFSKSQPTILRQYAAAYLASFVARGARVSSEVVRDVFDLLGTHLQSLQSEYEPNC 449
Query: 389 LGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP--------------- 433
G D+ K + FYS QA++Y+ CFR R + + L+S L P
Sbjct: 450 RGPDL--KRYGPFYSTAQALLYIFCFRWRDLTNAA-LESDLSFPPSSSPPHINNLDLDDV 506
Query: 434 ---------LETVLKHDLNPLKVCLPSVVSEFLQQSKAARL---FTVSET------FVFN 475
L + LNPLKVC PS+VSEF + + L + + ET F
Sbjct: 507 HFPPQIKNLLRRTIYSKLNPLKVCSPSIVSEFARLTHHLSLMYIYPLIETNKRLRISSFR 566
Query: 476 DLLESELSRAFGGLER-----------LDMFFPFDPCLLKKSDRF 509
+L L FG +ER LD +FPFDP L +S R+
Sbjct: 567 NLTTLALESRFGQVEREIKADDDAGPLLDAYFPFDPYHLPRSRRW 611
>gi|367052659|ref|XP_003656708.1| hypothetical protein THITE_2147230 [Thielavia terrestris NRRL 8126]
gi|347003973|gb|AEO70372.1| hypothetical protein THITE_2147230 [Thielavia terrestris NRRL 8126]
Length = 717
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 134/581 (23%), Positives = 235/581 (40%), Gaps = 118/581 (20%)
Query: 24 ELVYHVREALTSVQSGDNDNYNQLVAVMH-LSGRLDPDNRALLE--------TSLKALSG 74
E V++AL GD+++Y+ L + + +L PD+ E + AL+G
Sbjct: 79 EAKREVKQALEGHSRGDDEDYDHLKELFAPRTKQLTPDDDDDEERVKPQDLIAYVVALTG 138
Query: 75 AVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFT 134
+ S LL SI + D D A L+ +L++ LTM+V FT
Sbjct: 139 YAPLLGRSC-SGLLGSILRCAWLERDEDFAMAYIQLLAALSSIQMSIFTQVLTMVVDKFT 197
Query: 135 -----------PPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQ 183
PP EP +R +H +K + +L P P +L +V
Sbjct: 198 ETRHASSVAGFPPV-------EPETKKR------WLHIGVKYLLELFPAGPHIILDLVTS 244
Query: 184 RMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWD-DIL 242
+ P E + Y+++ L+L+++ +L R L+ ++ RL+ LD+E+ D +
Sbjct: 245 KFPY---SEESKATHLEYIDHLLRLKAT-RPDLERD-LMELILSRLVKLDVEMTLDLEND 299
Query: 243 HDDFSKGIF-EMELEDVEEAADDA----------EQVGDELPSGSLSRKSL--SGNLIAE 289
D+ ++ + ++E D +D E DE L+ KS + + I +
Sbjct: 300 DDEITRAVLRQLEASDANNEDEDDESDADSVLSDEDDLDEQAKRVLTIKSKLETMDAILD 359
Query: 290 LLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDP-------ENCGLRFA---TMLADVF 339
LL S+ FE +S E + + ++ + P + +FA T L D+F
Sbjct: 360 LLFSIYTPVFEDPDSPEALEAFQDLLSDFSNVILPYLKSRHTQYLLFKFAVKSTRLMDMF 419
Query: 340 VSGLY----------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVD----WCLEY 385
+ L+ P+ + +AV+YLASF +R + + + L+D + + +
Sbjct: 420 IGTLFNLAFEPTNRRAPVVKQAAVAYLASFTARGAAVQSEQVQMITNTLLDHIDVYRVTH 479
Query: 386 CNILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQL---------------- 429
+ G D+ + + +Y+ Q ++Y+ CFR R ++D ++ S L
Sbjct: 480 PDCRGPDV--RRYSQYYAYFQGLLYIFCFRWRDLIDRDQVPSSLDWDDPASFIGRELPWM 537
Query: 430 --LLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFG 487
L L+ + LNPLK C P +V EF + S L + N + LS+ F
Sbjct: 538 AGLRSRLQVNIASKLNPLKCCSPVIVEEFARLSHHLGLIYIYPQIEKNKSI--HLSQFFT 595
Query: 488 G-------------------LERLDMFFPFDPCLLKKSDRF 509
G L L+ FPFDP L + R+
Sbjct: 596 GSYATGGALRDTGFELDGPELTHLEACFPFDPFQLPVARRW 636
>gi|171696060|ref|XP_001912954.1| hypothetical protein [Podospora anserina S mat+]
gi|170948272|emb|CAP60436.1| unnamed protein product [Podospora anserina S mat+]
Length = 683
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 136/563 (24%), Positives = 228/563 (40%), Gaps = 112/563 (19%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGR--------LDPDNRALLETSLKALSGAVSYID 80
VR+AL GD +Y+ L + S R DP ++ LL + AL+G V +
Sbjct: 83 VRQALEGKARGDEQDYDNLKDLFAPSNRNSSPDEDEEDPRHQELLGYVV-ALTGYVPMLG 141
Query: 81 ISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNF--TPPSY 138
S L+ S+ S + D + A L+ +L++ + L M+V F T S
Sbjct: 142 RSC-TGLVRSVLRCSWLDRDENFAKAYIQLLAALSSVQASFFAEILRMMVEKFVETKSSS 200
Query: 139 FLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMI 198
+ P LE + + R+H +K + DL P ++ +V + P E +
Sbjct: 201 AVPGFP-PVDLETRKK---RLHVGIKYLLDLFPAGSKMIIKLVTSKFPYTD---EPKAVH 253
Query: 199 VVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWD-DILHDDFSKGIFEMELED 257
+ Y+++ L+L++S +L R + + ++ +L+ LD+E+ D + DD ++ + D
Sbjct: 254 MSYIDHLLRLKTS-RPDLERDIMEL-ILAQLVKLDVEMTLDLENDEDDTTRAVMRSIQTD 311
Query: 258 VEEAADDAEQV-------GDELPSGSLSRKSLSGNLIAELLDSLMVLTF-------EHLE 303
++ +D E D+LP + + L E LD++M L F E +
Sbjct: 312 AKDDQEDDESDDESVMSDDDDLPEETKRVIKIKNKL--ETLDAIMDLVFSIYDPIFEKPD 369
Query: 304 SCEGTG-------------------RLIEFVMFYACALDPENCGLRFATMLADVFVSGLY 344
S E R ++++F A+ + F +L V S
Sbjct: 370 SDEAVACFENLLSDFKNVILPHLKSRHTQYLLF-KFAMKSDQLMEMFLGLLLSVAFSSTE 428
Query: 345 PPLTRMSAVSYLASFLSR-ARFLSPC--FIVSLLKRLVDWCLEYCNILGGDINPKAHRVF 401
P+ + +A +YLASF +R AR S IVS L +D+ +R
Sbjct: 429 APVIKQAAAAYLASFTARGARVQSHTVQLIVSCLLDYIDY----------------YRET 472
Query: 402 YSGCQAIMYVLCFRMRSIMD---IPR----------LKSQLLLMP-----LETVLKHDLN 443
+ C+ ++Y+ CFR R ++D +P L L MP + + LN
Sbjct: 473 HRHCRGLLYIFCFRWRDLLDQGALPDNVDWDDPASFLGQDLPWMPDLKKRMHANIASKLN 532
Query: 444 PLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLE-SEL---SRAFGGLER-------- 491
PLK C P +V EF Q + L + N + S+ S A GG R
Sbjct: 533 PLKCCSPVIVEEFAQLAHHLGLMYIYPQIEKNKSIHLSQFYTGSYAQGGALRDTGFEFDN 592
Query: 492 -----LDMFFPFDPCLLKKSDRF 509
L+ FPFDP L + R+
Sbjct: 593 EKWTHLEACFPFDPFQLPIARRW 615
>gi|240279710|gb|EER43215.1| RNA polymerase I-specific transcription initiation factor RRN3
[Ajellomyces capsulatus H143]
Length = 741
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 118/286 (41%), Gaps = 64/286 (22%)
Query: 274 SGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFAT 333
+G++ K +L+ +L++ T+ R +F++F+ P RFAT
Sbjct: 418 NGTVDEKETVHDLLLSHFQTLILPTYR--------SRHTQFLLFHYSQSSPIFID-RFAT 468
Query: 334 MLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDI 393
+ S P + R A +YLASF++R +S +++ + D + L +
Sbjct: 469 TCVQIIFSRSEPTIIRQYAAAYLASFVARGAHVSS----EVVRDVFDLLGTHLQNLQAEY 524
Query: 394 NP-------KAHRVFYSGCQAIMYVLCFRMRSI-----------------------MDIP 423
P K + FYS QA++Y+ CFR R + +D
Sbjct: 525 EPTCRGPDLKRYGPFYSTAQALLYIFCFRWRDLTTAALDADITTTPASSTWLYDLDLDDA 584
Query: 424 RLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAAR---LFTVSET------FVF 474
R Q+ + L + LNPLK+C P++VSEF + + L+T+ ET F
Sbjct: 585 RFPPQIKNV-LSPAINSKLNPLKICSPAIVSEFARLTHHLHFMYLYTLIETNKRIRISSF 643
Query: 475 NDLLESELSRAFGGLER-----------LDMFFPFDPCLLKKSDRF 509
+ FG +ER LD +FPFDP L +S ++
Sbjct: 644 RSRAVLAMQSRFGNVEREIKADDDLGPQLDAYFPFDPYHLPRSRKW 689
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 6/123 (4%)
Query: 113 SLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPL 172
+LAA+ G Y++S L +LV KL + + ++ +RVH A+K + L+P
Sbjct: 219 TLAAARGTYLNSVLRVLVHGLRQAGPRTGKLPG-YAIVYPSEIYARVHMAIKYVIQLIPA 277
Query: 173 APTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDL 232
L P++ P + + K +VY N +K+ A +RS +L + ++L+ +
Sbjct: 278 GSGALSPLIASSFP---HDTDTAKAHIVYTRNIIKIIDYA--PELRSDILALITEKLVKI 332
Query: 233 DME 235
D++
Sbjct: 333 DVQ 335
>gi|242221356|ref|XP_002476428.1| predicted protein [Postia placenta Mad-698-R]
gi|220724312|gb|EED78364.1| predicted protein [Postia placenta Mad-698-R]
Length = 723
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 102/211 (48%), Gaps = 28/211 (13%)
Query: 272 LPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRF 331
L G + R+ L++ + D ++ TF+ R +F++F+ +LDPE L
Sbjct: 482 LEDGKMLRRQQFHALLS-IFDRTILRTFK--------SRYTQFLVFWYSSLDPEFSDLFQ 532
Query: 332 ATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGG 391
+++ + P +TR +A SY+ASF+SRA+F+ ++ L ++ +IL
Sbjct: 533 GMLVSKSLLEEDQPAVTRAAAASYIASFVSRAQFVDRESTRRVVACLCNFLRNRLDILDA 592
Query: 392 DINPKA-------HRVFYSGCQAIMYVLCFRMRSIM----DIPRL--------KSQLLLM 432
N A H VFY+ QA+ + CFR R ++ D+ K + L
Sbjct: 593 VTNAGATPPSMAHHSVFYAVAQAVFLIFCFRWRDLLEDQDDVDEFAAAAAPAKKWMVELQ 652
Query: 433 PLETVLKHDLNPLKVCLPSVVSEFLQQSKAA 463
L+ V+ +LNPLK+C +VV +F + ++A
Sbjct: 653 ILQRVVTSELNPLKICSANVVMQFARVAQAT 683
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 110/251 (43%), Gaps = 27/251 (10%)
Query: 22 DLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLD-PDNRALLETSLKALSGAVSYID 80
D+ L + V AL +G +D +++L+ +L D P A L + ALS VS ++
Sbjct: 136 DMHLAF-VNNALQQKANGISDAFDELLDQFNLKKPSDGPLPTAQLRLWILALSHVVSRLE 194
Query: 81 ISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYF- 139
H SL+ ++ D + + I L ++ +Y+ L + FT S
Sbjct: 195 -RCHSSLVEAVINTPWTTMDTVFVKSYISFIGMLISARPEYLFLVLGKISHGFTYQSGLQ 253
Query: 140 ---LDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLK 196
L+ + V R+H L+ + LVP P+ L P++V+ P +K +
Sbjct: 254 ALDLELPSSSSSPLTRRVVYDRLHYLLQHLLSLVPTLPSTLHPLLVRNFP---HKRQSQA 310
Query: 197 MIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELE 256
V Y+ N L++ + EL +L ++DR I +D+EI ++ELE
Sbjct: 311 AQVTYIRNILRI-TEYCPELSEG-ILATIIDRAIQIDVEI---------------QVELE 353
Query: 257 DVEEAADDAEQ 267
++EE + +Q
Sbjct: 354 ELEEHSASQDQ 364
>gi|302411166|ref|XP_003003416.1| RNA polymerase I-specific transcription initiation factor rrn3
[Verticillium albo-atrum VaMs.102]
gi|261357321|gb|EEY19749.1| RNA polymerase I-specific transcription initiation factor rrn3
[Verticillium albo-atrum VaMs.102]
Length = 743
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 110/514 (21%), Positives = 209/514 (40%), Gaps = 98/514 (19%)
Query: 24 ELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRA--------LLETSLKALSGA 75
E+ VR+AL G++ +Y+ L + R P + L+ + AL+
Sbjct: 184 EVNMEVRKALEEHLMGEDSDYDNLKEIFANDKRKSPSDLGGDSVVKPQELKLYILALTNC 243
Query: 76 VSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTP 135
V + L+ ++ +S D + L+ +L ++ G Y+ L+ ++ F+
Sbjct: 244 VPLLKNRACNGLVRNVLQVSWLGRDENFYKVYLQLMAALVSAQGSYLSIVLSTMMEKFSH 303
Query: 136 PSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERL 195
S + E + R+ + R+H AL+ + + P A L ++ + P +
Sbjct: 304 SSSADWSIPEYPSVTRE-AMRERLHGALRYLLKMFPAATPVLRTLISAKFPFADDPQ--- 359
Query: 196 KMIVVYMENTLKLESSAMGELVRSTLLMAVVD----RLIDLDMEIGWD-DILHDDFSKGI 250
+ V Y++N L L+ A + L + +VD RL+ +D+++ D + L D+ + +
Sbjct: 360 RAHVAYVKNLLALKEYA------TELDLDIVDLILQRLVAIDVQMQVDLEDLDDELTASV 413
Query: 251 FEMELEDVEEAADDAEQVGDELPSGSLSR---------------------KSLSGNLIAE 289
+ ++++ GDE+ G + K+ + E
Sbjct: 414 AYA----LGKSSNTGSWEGDEMDLGEVKDDDDDDDESVDSDDSDIDDQEAKARTVKSNVE 469
Query: 290 LLDSLMVLTFEHLES-----------------CEGTGRLI---------EFVMFYACALD 323
LD+++ FE+ + G+ + +F++F+ L
Sbjct: 470 KLDAILDTLFEYYTPHFADPDSDDAYYEYALLVQSFGKFVLPTYKSRHTQFLLFHFGQLS 529
Query: 324 PENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVS----LLKRLV 379
E F L +F P R +A +YLA F++R + + + LL R+
Sbjct: 530 -ERLRDTFVGSLMHIFTEQNRPAFVRQAAATYLAGFVARGAHVPGDLVRTIFNLLLARMK 588
Query: 380 DWCLEY-CNILGGDINPKAHRVFYSGCQAIMYVLCFRMRS-IMDIPRL-----KSQLLLM 432
+ L + G D+ K H+++YS QAI+YV CFR + ++ +P S L
Sbjct: 589 SYRLRHDAQSRGPDM--KRHQIYYSMAQAILYVYCFRWKDLVVSVPEHVDPEDASSYLGH 646
Query: 433 PLETV--LKHDL--------NPLKVCLPSVVSEF 456
LE + LK +L NPLK+C P++V EF
Sbjct: 647 ELEWIHGLKEELASHVYCRMNPLKICSPAIVDEF 680
>gi|154280100|ref|XP_001540863.1| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Ajellomyces capsulatus NAm1]
gi|150412806|gb|EDN08193.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 632
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 103/247 (41%), Gaps = 56/247 (22%)
Query: 313 EFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIV 372
+F++F+ P RFAT + S P + R A +YLASF++R +S
Sbjct: 340 QFLLFHYSQSSPIFID-RFATTCVQIIFSRSEPTIIRQYAAAYLASFVARGAHVS----S 394
Query: 373 SLLKRLVDWCLEYCNILGGDINP-------KAHRVFYSGCQAIMYVLCFRMRSI------ 419
+++ + D + L + P K + FYS QA++Y+ CFR R +
Sbjct: 395 EVVRDVFDLLGTHLQNLQAEYEPTCRGPDLKRYGPFYSTAQALLYIFCFRWRDLTTAALD 454
Query: 420 -----------------MDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKA 462
+D R Q+ + L + LNPLK+C P++VSEF + +
Sbjct: 455 ADITTTPASSAWLYDLDLDDARFPPQIKNV-LSPAINSKLNPLKICSPAIVSEFARLTHH 513
Query: 463 AR---LFTVSET------FVFNDLLESELSRAFGGLER-----------LDMFFPFDPCL 502
L+T+ ET F + FG +ER LD +FPFDP
Sbjct: 514 LHFMYLYTLIETNKRIRISSFRSRAVLAMQSRFGNVEREIKADDDLGPQLDAYFPFDPYH 573
Query: 503 LKKSDRF 509
L +S R+
Sbjct: 574 LPRSRRW 580
>gi|342321538|gb|EGU13471.1| Pirin domain-containing protein [Rhodotorula glutinis ATCC 204091]
Length = 1886
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 88/194 (45%), Gaps = 34/194 (17%)
Query: 289 ELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLT 348
++ D ++ TF+ R ++FV+FY C+LD + +L PP+T
Sbjct: 1231 DIFDRTLLRTFKT--------RNVQFVLFYLCSLDSASTDHFIGVLLGRALFDQDAPPVT 1282
Query: 349 RMSAVSYLASFLSRARFLSPCFIVSLLKRLVDW----CLEYCNI------LGGDINPKAH 398
R++A Y+ASF++RA+++ +++ L + +Y + G P
Sbjct: 1283 RVAAAGYVASFIARAKYVDAAMTRKVVRHLCGYLEGQMEDYARTSALATSIAGAKAPGGG 1342
Query: 399 R---VFYSGCQAIMYVLCFRMRSIMDIPRL----------KSQLLLMPLETVLK---HDL 442
VFY+ QA+ Y+ CFR + ++D + +M LETV K
Sbjct: 1343 SELPVFYAVAQAVFYIFCFRWKDLLDEDDADDEAALFGLDAGRRWMMGLETVKKAVSSSF 1402
Query: 443 NPLKVCLPSVVSEF 456
NPLKVC VV++F
Sbjct: 1403 NPLKVCAQPVVNQF 1416
>gi|412992492|emb|CCO18472.1| predicted protein [Bathycoccus prasinos]
Length = 972
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 89/183 (48%), Gaps = 23/183 (12%)
Query: 310 RLIEFVMFYACALD--------PENCGLRFATMLADVFVSGLYPPLTRMSAVSYLA---- 357
+ ++++FY C++D ++ +L D V+ + S A
Sbjct: 490 KFAQYIVFYLCSMDFNDGDQQNSDDANKSSCELLRDGLVAKMLNSNEANSLRLAAAAYLA 549
Query: 358 SFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKAH-----RVFYSGCQAIMYVL 412
SF++RA+FLS F+V L+ + W + + + N KA F S CQA+MY+L
Sbjct: 550 SFVARAKFLSAEFVVETLETVCGWLMRKVH----ENNVKAMSEVELNAFDSCCQAVMYIL 605
Query: 413 CFRMRSIMDI-PRLKSQLLLMPLETVL-KHDLNPLKVCLPSVVSEFLQQSKAARLFTVSE 470
C+R I + + K +L +PL +L L PL+ CLPSVV EFL+ + AA + +E
Sbjct: 606 CYRCDEIANNDEKSKKRLQALPLREILYAPTLEPLQSCLPSVVHEFLKNASAANILGFTE 665
Query: 471 TFV 473
+
Sbjct: 666 DMI 668
>gi|121941406|sp|Q2M238.1|RN3P1_HUMAN RecName: Full=Putative RRN3-like protein RRN3P1; AltName: Full=RNA
polymerase I transcription factor homolog pseudogene 1
gi|193785138|dbj|BAG54291.1| unnamed protein product [Homo sapiens]
Length = 152
Score = 75.1 bits (183), Expect = 8e-11, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 66/126 (52%), Gaps = 12/126 (9%)
Query: 345 PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA------H 398
P + R +A +Y+ SFL+RA+F+S + L LV+W Y N D KA H
Sbjct: 21 PAIIRQAAGNYIGSFLARAKFISLITVKPCLDLLVNWLHIYLN--NQDSGTKAFCDVALH 78
Query: 399 RVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLL---MPLETVLKHDLNPLKVCLPSVVSE 455
FYS CQA+ Y FR + ++ LK L + E ++ LNPLK+CLPSVV+
Sbjct: 79 GPFYSACQAVFYTFVFRHKQLLS-GNLKEGLQYPQSLNFERIVMSQLNPLKICLPSVVNF 137
Query: 456 FLQQSK 461
F +K
Sbjct: 138 FAAITK 143
>gi|158256930|dbj|BAF84438.1| unnamed protein product [Homo sapiens]
Length = 152
Score = 75.1 bits (183), Expect = 8e-11, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 66/126 (52%), Gaps = 12/126 (9%)
Query: 345 PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA------H 398
P + R +A +Y+ SFL+RA+F+S + L LV+W Y N D KA H
Sbjct: 21 PAIIRQAAGNYIGSFLARAKFISLITVKPCLDLLVNWLHIYLN--NQDSGTKAFCNVALH 78
Query: 399 RVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLL---MPLETVLKHDLNPLKVCLPSVVSE 455
FYS CQA+ Y FR + ++ LK L + E ++ LNPLK+CLPSVV+
Sbjct: 79 GPFYSACQAVFYTFVFRHKQLLS-GNLKEGLQYPQSLNFERIVMSQLNPLKICLPSVVNF 137
Query: 456 FLQQSK 461
F +K
Sbjct: 138 FAAITK 143
>gi|3355303|gb|AAC27822.1| Unknown gene product [Homo sapiens]
Length = 153
Score = 74.7 bits (182), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/121 (38%), Positives = 64/121 (52%), Gaps = 12/121 (9%)
Query: 345 PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA------H 398
P + R +A +Y+ SFL+RA+F+S + L LV+W Y N D KA H
Sbjct: 21 PAIIRQAAGNYIGSFLARAKFISLITVKPCLDLLVNWLHIYLN--NQDSGTKAFCDVALH 78
Query: 399 RVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLL---MPLETVLKHDLNPLKVCLPSVVSE 455
FYS CQA+ Y FR + ++ LK L + E ++ LNPLK+CLPSVV+
Sbjct: 79 GPFYSACQAVFYTFVFRHKQLLS-GNLKEGLQYPQSLNFERIVMSQLNPLKICLPSVVNF 137
Query: 456 F 456
F
Sbjct: 138 F 138
>gi|396470626|ref|XP_003838675.1| hypothetical protein LEMA_P023480.1 [Leptosphaeria maculans JN3]
gi|312215244|emb|CBX95196.1| hypothetical protein LEMA_P023480.1 [Leptosphaeria maculans JN3]
Length = 751
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 120/271 (44%), Gaps = 47/271 (17%)
Query: 284 GNLIA--ELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVS 341
GNL+A E+ +SL+ F ++ R +FV+F+ + RFA + +
Sbjct: 423 GNLLAIDEIFESLLS-QFANIILPTYRSRHTQFVLFHFSQTSSDLIN-RFAGCCSHLAFD 480
Query: 342 GLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNIL------GGDINP 395
P L R SA +YLASF++R +S + + L+ + LE I G D+
Sbjct: 481 QGRPQLMRASAAAYLASFIARGAHVSREVVRDVFD-LLCYHLEALRITHEPLCKGPDL-- 537
Query: 396 KAHRVFYSGCQAIMYVLCFRMRSIM----DIPRLKSQLLLM--------PLETVLKHD-- 441
+ + +Y+ QA++Y CFR R ++ D P ++ ++ VL+ +
Sbjct: 538 RRYSTYYAISQALIYTFCFRWRDLIITPDDTPPTDEDIIYHEGDFTWHSSVQEVLRRNIF 597
Query: 442 --LNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRA------FGGLER-- 491
LNPLK+C P++VS+F + + R + N + S A GG E
Sbjct: 598 CRLNPLKICAPTIVSQFARMAHHLRFMYIYPLIETNKRVRLARSMASGYLDGIGGRETAL 657
Query: 492 ----------LDMFFPFDPCLLKKSDRFANA 512
+D +FPFDP +L KS R+ +
Sbjct: 658 TGKRGEQTFLMDAYFPFDPYVLPKSKRWVES 688
>gi|367018920|ref|XP_003658745.1| hypothetical protein MYCTH_2141489 [Myceliophthora thermophila ATCC
42464]
gi|347006012|gb|AEO53500.1| hypothetical protein MYCTH_2141489 [Myceliophthora thermophila ATCC
42464]
Length = 717
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 118/498 (23%), Positives = 201/498 (40%), Gaps = 86/498 (17%)
Query: 86 SLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLD-KLK 144
LL S+ S D + A L+ +L++ G LTM+V FT + +
Sbjct: 160 GLLRSVLRCSWLERDENFARAYIQLLAALSSVQGSLFTQVLTMMVDKFTETRHTSSVRGF 219
Query: 145 EPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMI-VVYME 203
P E K + L H LK + +L P +L +V + P E K + + Y++
Sbjct: 220 APVDPETKRKWL---HIGLKYLLELFPAGQHLILNLVSTKFPYT----EASKAVHMEYID 272
Query: 204 NTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAAD 263
+ L+L++ A EL R + + ++ RL+ LD+E+ D DD + +LE + +
Sbjct: 273 HLLRLKA-ARPELERDIMEL-ILSRLVKLDVEMSLDLENDDDETTRAVLRQLEAPDAKNE 330
Query: 264 DA-----------------EQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCE 306
D EQ L + K + + I +LL S+ FE +S +
Sbjct: 331 DEDDDSDADSVLSDDDGLNEQAKRVL---MIKSKLETMDAILDLLFSIYNPVFEDPDSPD 387
Query: 307 GTGRLIEFVMFYACALDP-------ENCGLRFA---TMLADVFVSGLY--------PPLT 348
+ + ++ + P + +F+ T L ++F+ L+ PP+
Sbjct: 388 AIEAFQDLLSDFSNVILPHLKSRHTQYLLFKFSMKSTQLMEMFIGTLFNLAFESNRPPVV 447
Query: 349 RMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKAHRV--FYSGCQ 406
+ +AV+YLASF +R + + + + +D+ Y + P R +Y+ Q
Sbjct: 448 KQAAVAYLASFTARGARVQSDQVKMITQTFLDYMDHYRAVHTSCRGPDVRRYSQYYAYFQ 507
Query: 407 AIMYVLCFRMRSIMDIPRLKSQL------------------LLMPLETVLKHDLNPLKVC 448
++Y+ CFR R ++D L S L L L+ + LNPLK C
Sbjct: 508 GLLYIFCFRWRDLIDQDLLPSNLDWDDPASFIGRDLPWMTGLRSRLQANIGSKLNPLKCC 567
Query: 449 LPSVVSEFLQQSKAARLFTVSETFVFNDLLE-SEL---SRAFGGLER------------- 491
P +V EF + + RL + N + S+ S A GG R
Sbjct: 568 SPIIVDEFARLAHHLRLIYIYPQIEKNKSVHLSQFFTGSYATGGALRDTGLEFDDEKWTH 627
Query: 492 LDMFFPFDPCLLKKSDRF 509
L+ FPFDP L + R+
Sbjct: 628 LEACFPFDPFQLPVAKRW 645
>gi|66804835|ref|XP_636150.1| hypothetical protein DDB_G0289587 [Dictyostelium discoideum AX4]
gi|60464502|gb|EAL62647.1| hypothetical protein DDB_G0289587 [Dictyostelium discoideum AX4]
Length = 706
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 96/222 (43%), Gaps = 36/222 (16%)
Query: 328 GLRFATMLADVFVSGLYPPLT--------RMSAVSYLASFLSRARFLSPCFIVSLL-KRL 378
G + A+ F+ L+ L R + +Y+ F+SRA FL P I L+ K L
Sbjct: 397 GTNHRILYAESFIRYLFGKLCNETIHSMHRHACAAYIGGFISRASFL-PSHITKLVFKDL 455
Query: 379 VDWCLEYCNILGGDINPK------AHRVFYSGCQAIMYVLCFRMRSIMDIPRLKS----- 427
+ + + Y + NP H +FYS CQ+I Y+ CFR I+D K+
Sbjct: 456 LGFAMAYVERVDVKSNPNIYPDPHNHSLFYSVCQSIYYIFCFRNSVILDFTDFKNDKKDE 515
Query: 428 ------QLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFND----L 477
Q L + LNP KVCL SVV +F +FT + + L
Sbjct: 516 KQREFWQDLHAAFRKISMSRLNPFKVCLKSVVRQFCCVCLRVGIFTKCTGILKTNKNVLL 575
Query: 478 LESELSRAFGGL----ERLDMFFPFDPCLLKKSDR-FANATL 514
+S ++ + + D FFPFDP LL S + FAN+ +
Sbjct: 576 SKSTITGSSAAPTVSNNQFDSFFPFDPYLLFHSSKFFANSYI 617
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/276 (19%), Positives = 110/276 (39%), Gaps = 28/276 (10%)
Query: 97 WNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVL 156
W ++ +I+L + C ++L+S F P + K + E+ +
Sbjct: 46 WTQSEQTVNNFVDFLINLVTFKSTFAFECFSLLISAFEPYKIAI-KNQSKVSYEKWELIS 104
Query: 157 SRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGEL 216
+VH + I ++PL+ + L ++V + P H H + Y++N L + +
Sbjct: 105 MKVHFSFNKILSVIPLSSSILAKLIVNKFP--HKSHP-ADVQHFYLKNALYV--TRYCSS 159
Query: 217 VRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGS 276
+ T++ A V +I +D+ I D++ D+ + F++E A++ E
Sbjct: 160 ITQTIVSAAVSSMIQIDVSISLDEMPDDEDLQ--FDIEGNASTNTAEEQE---------- 207
Query: 277 LSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFY--ACALDPENCGLRFATM 334
G + A+ LD LM L ++ + G + +FY C L ++
Sbjct: 208 -------GKINAQKLDILMNLMLDYFDVRFGLAKKDSGNIFYFDGCELQDKSTQDDLFAN 260
Query: 335 LADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCF 370
L +F + P + YL ++ R + L F
Sbjct: 261 LVKIFDQTILPTY-KSKYTQYLLFYICRIQHLQSHF 295
>gi|156057381|ref|XP_001594614.1| hypothetical protein SS1G_04421 [Sclerotinia sclerotiorum 1980]
gi|154702207|gb|EDO01946.1| hypothetical protein SS1G_04421 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 584
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 40/236 (16%)
Query: 310 RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPC 369
R +F++F+ A E+ +FA + P + R S+ +YLASF++R + P
Sbjct: 301 RHTQFLLFH-FAQKSEHLIDQFAGTCVQLAFQPGRPAVLRQSSAAYLASFVARGAHVEPQ 359
Query: 370 FIVSLLKRLVDWCLEYC------NILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIP 423
+ ++ + L+ L++ N G D+ K + FY+ QA++Y+ CFR R ++D
Sbjct: 360 VVRTVFE-LIGSNLDHIRTENELNCRGPDL--KKYGTFYAMTQALLYIFCFRWRDLIDSS 416
Query: 424 R---------------LKSQLLLMPLETVLKHDLNPLKVCLPSVVSEF------------ 456
+ + + L + LNPLK+C P +VSEF
Sbjct: 417 EVFDDEDPAAFIGQDLVWTAGIKETLSRAIYSKLNPLKICSPPIVSEFAKIAHHLRFMYV 476
Query: 457 ---LQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
L+ +K RL S L +S + +LD +FPFDP L S ++
Sbjct: 477 YSLLETNKRIRLSQFSSAVGNGALRDSGNGASNDSWHQLDAYFPFDPYQLPVSKKW 532
>gi|426381325|ref|XP_004057298.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase I-specific
transcription initiation factor RRN3 [Gorilla gorilla
gorilla]
Length = 579
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 81/176 (46%), Gaps = 26/176 (14%)
Query: 355 YLASFLSRARFLSPCF------IVSLLKRLVDWCLEYCNILGGDINPKA------HRVFY 402
YL SF R+ C+ + S L LV+W Y N D KA H FY
Sbjct: 331 YLCSFKLRS---GECWSWERSTVKSCLDLLVNWLHIYLN--NQDSGTKAFCDVALHGPFY 385
Query: 403 SGCQAIMYVLCFRMRSIM--DIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQS 460
S CQA+ Y FR + ++ ++ L + E ++ LNPLK+CLPSVV+ F +
Sbjct: 386 SACQAVFYTFVFRHKQLLSGNLKEGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAIT 445
Query: 461 KAARLFTVSETFVFNDLLESELSRAFGGLER-------LDMFFPFDPCLLKKSDRF 509
+L N+ + R+ G + LD FFPFDPC+LK+S +F
Sbjct: 446 NKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQTCTNPLDTFFPFDPCVLKRSKKF 501
>gi|398398327|ref|XP_003852621.1| hypothetical protein MYCGRDRAFT_59030, partial [Zymoseptoria
tritici IPO323]
gi|339472502|gb|EGP87597.1| hypothetical protein MYCGRDRAFT_59030 [Zymoseptoria tritici IPO323]
Length = 678
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 126/596 (21%), Positives = 242/596 (40%), Gaps = 113/596 (18%)
Query: 8 DHAESHEMEDVNISDLELVYH-----VREALTSVQSGDNDNYNQLVAVM---HLSGRLDP 59
D+ + M+D + LELV ++ L + D+ Y +L+ ++ SG D
Sbjct: 57 DNVDVRIMDDWSDKSLELVKEEIRVGIQRHLAPAEQKDDTQYARLLLLLGQDSFSG--DA 114
Query: 60 DNRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNG 119
+ LL+ + ALS + + L+++ +S D + ++ +I LA+++
Sbjct: 115 PSTKLLKRYIMALSAHIG--SLGECSKLVLAALDLSWLGRDQEFVEVYMKFLIILASTHS 172
Query: 120 KYVDSCLTMLVSNFT--PPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRL 177
K++ + ++ F P S +EP + + R+H ++++ VP A + L
Sbjct: 173 KFISPIMDKAIAQFERLPASSGRLPSEEPVS---RASMFDRLHDFIQTLLRRVPSASSVL 229
Query: 178 LPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGEL--VRSTLLMAVVDRLIDLDME 235
+ ++ + P N +K V Y + L+L +GEL ++S ++ + RL+++D++
Sbjct: 230 VRMLKNQFP---NDLATVKGHVQYQRHILRL----VGELPELKSEMMALIAQRLVEIDVQ 282
Query: 236 IGWDDILHDDFSKGIFEMELEDVEEAAD-------DAEQVGD-ELPSGSLSRKSLSGNLI 287
I D +D + + V+ AD D E V + EL + ++ L
Sbjct: 283 IQQDLDELEDEEEDKLIRRPQAVQNHADGDESDDSDVESVSESELTTTDEEQRLRELRLK 342
Query: 288 AELLDSLMVLTFEHLESCEGTG-------------------------RLIEFVMFYACAL 322
+ +D+ L F + G R +F++F+
Sbjct: 343 VDKMDATQDLLFTYYAPSFEPGSTPYNNTAYKEMLSHFDNFIMTNRSRHAQFLLFHFAQT 402
Query: 323 DPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWC 382
P F + + R++A +Y+ASF +RA +S + + + L C
Sbjct: 403 SP-MYARHFTSHCLRIACDRNIASNNRLTACAYVASFTARASRISTKLVREITQTL---C 458
Query: 383 LEYCNILGGDINP-------KAHRVFYSGCQAIMYVLCFRMRSIMDIP-RLKSQLLLMPL 434
+ Y + + P KA+ ++Y+ QA+ Y+ CFR R +++ P + S M
Sbjct: 459 V-YLDDMRHTYEPNCRGPDRKAYSMYYATAQALFYIFCFRWRDLIEEPSSVGSDDEGMSA 517
Query: 435 ETVLKHD--------------------LNPLKVCLPSVVSEF---------------LQQ 459
E +L +NPLKVC +V EF L++
Sbjct: 518 EDILAEGRDLSWISGLKETLNKNMHSIMNPLKVCSAPIVGEFAKISNHLRFLYVFSLLER 577
Query: 460 SKAARLFTVSETFVFNDLL-----ESELSRAFGGL-ERLDMFFPFDPCLLKKSDRF 509
+K RL +S + + E+ R G + +L+ +FPFDP L +S R+
Sbjct: 578 NKRIRLGQMSSSVSHAGGIDIGRRETAWDRKTGDVHHQLEPYFPFDPYNLSQSRRW 633
>gi|240954815|ref|XP_002399771.1| transcription initiation factor ia, putative [Ixodes scapularis]
gi|215490633|gb|EEC00276.1| transcription initiation factor ia, putative [Ixodes scapularis]
Length = 194
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 88/194 (45%), Gaps = 23/194 (11%)
Query: 335 LADVFVSGLYPPLT--------RMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYC 386
LAD F+ L+ + R ++ Y+ SFL+RA+F+ + L + W Y
Sbjct: 1 LADAFLDYLWKKVQNPSTATVIRQASAFYIGSFLARAKFVPLSTVRDCLSLVCRWAHAYL 60
Query: 387 NIL---GGDINPKA--HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP---LETVL 438
+ L ++P H FY+ CQ +YV F RS+ + + +L + LE ++
Sbjct: 61 SSLEEGSALLHPDVARHGTFYAVCQTALYVFAFHHRSLAHGDKGEERLPFLRDLNLEALV 120
Query: 439 KHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFND--LLESELSRAFGGLER----- 491
LNPLKVCLP+VV F ++ +L N L E G R
Sbjct: 121 MCPLNPLKVCLPAVVQRFASVARHYQLVYCYSVIERNQRSALPVEAGTMLYGASRGDDVA 180
Query: 492 LDMFFPFDPCLLKK 505
LD FFPFDP LLK+
Sbjct: 181 LDAFFPFDPYLLKR 194
>gi|429847579|gb|ELA23170.1| RNA polymerase i specific transcription initiation factor rrn3
superfamily [Colletotrichum gloeosporioides Nara gc5]
Length = 689
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 120/257 (46%), Gaps = 45/257 (17%)
Query: 293 SLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLR--FATMLADVFVSGLYPPLTRM 350
+L+V +F + R +F++F+ + + LR F L +F S P R
Sbjct: 389 ALLVQSFGKIVLPTYKSRHTQFLLFHFGQM---SARLRDTFVGSLMHIFGSQNRPSFVRQ 445
Query: 351 SAVSYLASFLSRARFLSPCFIVS----LLKRLVDWCLEY-CNILGGDINPKAHRVFYSGC 405
+A +YLA F++R + P + + LLK++ + +++ + G D+ + H+++Y+
Sbjct: 446 AAATYLAGFMARGAHVPPDLVRTVFALLLKQMQIYRVKHDPDARGPDL--RRHQIYYAQV 503
Query: 406 QAIMYVLCFRMRS-IMDIPR----------LKSQLLLMP-----LETVLKHDLNPLKVCL 449
QA +Y+ CFR R I+D P L ++L M L + +NPLK+C
Sbjct: 504 QAALYMFCFRWRDLIVDTPEFVDRDDPASYLGNELEWMQGMREELSASVYCKMNPLKICA 563
Query: 450 PSVVSEF---------------LQQSKAARLFT-VSETFVFNDLLESELSRAFGGLE-RL 492
P++V EF ++++K RL VS+T+ L S A +L
Sbjct: 564 PAIVEEFATLAHKLGLMYIFPRVEENKRIRLSQFVSDTYGTGGALRDTGSGAQDEESYQL 623
Query: 493 DMFFPFDPCLLKKSDRF 509
D +FPFDP L S R+
Sbjct: 624 DPYFPFDPYQLPVSKRW 640
>gi|358391514|gb|EHK40918.1| hypothetical protein TRIATDRAFT_227114 [Trichoderma atroviride IMI
206040]
Length = 993
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 114/524 (21%), Positives = 205/524 (39%), Gaps = 91/524 (17%)
Query: 65 LETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDS 124
L+ L AL+G + + L+ +I S D + + +L ++ G Y++
Sbjct: 128 LQVYLMALTGCIPILKSKDCNGLVKAILNCSWLGRDAAFVKVFTHFLAALVSAQGSYLNQ 187
Query: 125 CLTMLVSNF--TPPSYFL--DKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPI 180
L M+V F T PS + D + P R+ R+H+ L+ + + P A + L +
Sbjct: 188 VLNMIVGKFHDTRPSAWRVPDFPEVPRVTMRE-----RLHSTLQYLLRMFPSAISVLENL 242
Query: 181 VVQRMPTVHNKHERLKMIVVYMENTLKLESSA--MGELVRSTLLMAVVDRLIDLDMEIGW 238
+ + P + + +++ + Y+ N L+++ + E V +L VV ID M++
Sbjct: 243 LRTKFPFLDDS---MRVHMAYIHNLLQVKEYVPDLAEDVYDMILDRVVK--IDSQMQLDL 297
Query: 239 DDILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIA---------- 288
+D D + ++ + E+AA ++ D+ + S+ L + A
Sbjct: 298 EDTDDDITAAVMYALRENAQEDAAGWEDEADDDSDTESVDSDDLDYDQEAVRIKTLKDSV 357
Query: 289 ----ELLDSLMVLTFEHLESCEG----------------------TGRLIEFVMFYACAL 322
+LD+L + H + R +F++F+
Sbjct: 358 EKMDSMLDTLFDIYTPHFANPGSDKAFDMFTTILREFDQMVLPTYKSRHTQFLIFHFAQQ 417
Query: 323 DPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRA----RFLSPCFIVSLLKRL 378
++A F S P + + +A +YLASF++R R L + L+ L
Sbjct: 418 HERLTDAFCGQLIASAFQSNT-PNILKQAAAAYLASFVARGALVPRHLVRTIFMLLIHHL 476
Query: 379 VDWCLEYCNILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDI------PRLKSQLLLM 432
+ +Y + G + H +YS QA +Y+ CFR + ++ P + +
Sbjct: 477 DQYRRKYEPLCRGPDLKRFH-PYYSLVQATLYIFCFRWQDLVVSAPEFVDPEDPASYIGQ 535
Query: 433 PLE----------TVLKHDLNPLKVCLPSVVSEF---------------LQQSKAARL-- 465
LE T + LNPLKVC P +V EF ++ +K RL
Sbjct: 536 DLEWIGSARKDLSTHIFGKLNPLKVCAPVIVDEFAKLAHRLNFMYAYPLIESNKRIRLTQ 595
Query: 466 FTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
F S L +S +LD +FPFDP L S R+
Sbjct: 596 FLSSTYSTGGALRDSGFDTQEESFHQLDPYFPFDPYQLPVSKRW 639
>gi|210075839|ref|XP_503342.2| YALI0D26994p [Yarrowia lipolytica]
gi|199425858|emb|CAG81548.2| YALI0D26994p [Yarrowia lipolytica CLIB122]
Length = 649
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 117/526 (22%), Positives = 207/526 (39%), Gaps = 113/526 (21%)
Query: 69 LKALSGAVSYIDISHHESLLVSIFGMSMWNYDPD--VMDALKGLIISLAASNGKYVDSCL 126
++ALS +S +D L+ + + + P + D + L ++ ++
Sbjct: 103 IQALSIEISRLDSPRCSKLINGVVRLHLEKRQPSQALTDTYYRFLAVLVSAVPRWWSDVA 162
Query: 127 TMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMP 186
T LV++FT LD S H+AL+ + + P + T L +++ P
Sbjct: 163 TQLVADFT-----LDDA-------------SAQHSALRYMISITPTSATLLQGMLLDAFP 204
Query: 187 TVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDD- 245
NK + + ++ N L ++ +R+ + VV++ + +D+E+ + D+
Sbjct: 205 ---NKMDTTARLCNFIRNALI--TTEYCPALRNAVWGMVVEKSVQIDVELQDELDEMDEE 259
Query: 246 --FSKGIFEME------LEDVEEAADDAEQVGDELPSG--------------SLSRKSLS 283
F G+ + E L+D + + E D L G ++ S
Sbjct: 260 ELFDAGLLDAEDPEVVDLDDATDIKEGEEDGNDGLALGDSDDELDDDDDDHIEVNDASSV 319
Query: 284 GNLIAELLDSLMVLTFEHLESCEGTG-----------------------------RLIEF 314
G L+A+L D ++ L H+ G R +++
Sbjct: 320 GELLAKL-DGIVSLLLMHVGGKFNDGPEEITTETVSMYASLINVFKTYLLPTHRTRFVQY 378
Query: 315 VMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSL 374
++F A PE A+++ SG R A+ Y+AS+++RA+ LS IV +
Sbjct: 379 IVFQASQACPEFMDAFLASLIEITLSSGEGMD-KRSKAMQYIASYIARAKHLSKAQIVFV 437
Query: 375 LKRLVDWCLEYCNILGGDINP-----KAHRVFYSGCQAIMYVLCFR---MRSIMDIPRLK 426
+ L W Y + ++N + + FYS Q +MY+ CFR +R D P
Sbjct: 438 VSMLTGWIDRYVSEREAEVNGVPGSMERFKTFYSVVQGLMYIFCFRNEMLRLDSDAPEGD 497
Query: 427 SQL---LLMPLETVLKHDLNPLKVCLPSVVSEFLQ---QSKAARLFTV----SETFVFND 476
S L + ++ NPL+ C SVV+ F + AA FT+ V D
Sbjct: 498 SVWECKLDKFFQRIIMTKFNPLQYCNHSVVAMFAKIAHHHDAAYCFTIIDENKRGIVRKD 557
Query: 477 LLESELS----RAF------------GGLERLDMFFPFDPCLLKKS 506
L + + RAF +L+ +FPFDP LLK+S
Sbjct: 558 LHDKKDKTMPPRAFMEGAATLFDGPQKEFTQLEGYFPFDPLLLKRS 603
>gi|342872576|gb|EGU74932.1| hypothetical protein FOXB_14573 [Fusarium oxysporum Fo5176]
Length = 688
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 109/522 (20%), Positives = 206/522 (39%), Gaps = 87/522 (16%)
Query: 65 LETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDS 124
L+ + AL+G V + L+ ++ S D + + +L ++ G Y+
Sbjct: 128 LQVYVVALTGCVPILKNRLCNGLVHTVLNCSWLGRDDAFVKVFTHFLAALVSAQGSYLSP 187
Query: 125 CLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQR 184
L M+V F+ + + + + R+ + +R+H+ L + + P A + L ++V +
Sbjct: 188 VLMMMVGKFSDSRSSVWSVPDFPEVSRE-TMRNRLHSTLHYLLQMFPSAISVLEELLVSK 246
Query: 185 MPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWD-DILH 243
+P HN+ R+ M Y++N L+++ R + ++ R++ +D ++ D + L
Sbjct: 247 LP-FHNESMRVHM--AYVDNLLRIKDYVPDS--RDEVFDIILKRVVQIDSQMQTDLEDLD 301
Query: 244 DDFSKGIFEM-------------------------------------ELEDVEEAADDAE 266
DD + + ++ ++ + + +
Sbjct: 302 DDVTAAVMYALREHSEGDEWENDDDSDDESDAESVHSDDPDFDENVARIKSIKGSVEKMD 361
Query: 267 QVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPEN 326
+ D L S + G+ A + ++++ FE L R +F++F+ + E
Sbjct: 362 AMMDTLFSVYTPHFTNPGSDTAFDMFTVLLREFEQLVLPTYKSRHTQFLIFHFAQMH-ER 420
Query: 327 CGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVS----LLKRLVDWC 382
F L G P + + SA +YLASF++R L I S LL L +
Sbjct: 421 LTDAFCGQLIATAFQGNTPNVLKQSAAAYLASFVARGAHLPSGLIRSIFGLLLHHLDQYR 480
Query: 383 LEYCNILGGDINPKAHRV--FYSGCQAIMYVLCFRMRS-IMDIPR----------LKSQL 429
+Y + G P R +YS QA +Y+ CFR + I+ P + ++
Sbjct: 481 KKYEPLCRG---PDLMRFTPYYSLVQATLYIFCFRWQDLIVSTPEFVDPEDPASYIGQEM 537
Query: 430 LLM-----PLETVLKHDLNPLKVCLPSVVSEF---------------LQQSKAARL--FT 467
M L + LNPLKVC P +V EF ++ +K RL +
Sbjct: 538 EWMGTCRKDLSVQIFSKLNPLKVCAPVIVEEFAKISHRLNFMYVYPLVESNKRVRLTQYL 597
Query: 468 VSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
+ L ++ +LD +FPFDP L S R+
Sbjct: 598 TATYSTGGALRDAGYETQDESFHQLDPYFPFDPYQLPVSKRW 639
>gi|320593152|gb|EFX05561.1| RNA polymerase 1 specific transcription initiation factor rrn3
superfamily [Grosmannia clavigera kw1407]
Length = 724
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 116/482 (24%), Positives = 195/482 (40%), Gaps = 89/482 (18%)
Query: 107 LKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSI 166
+ + SL ++ G Y+ L M+V F P ++ + ++R+ +R+H L+ I
Sbjct: 203 FRAYVQSLVSAQGVYLRPVLEMIVDLFMEPRPSSWRVPDFPTVDRE-TAQTRLHFGLEYI 261
Query: 167 FDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVV 226
L P A + + IV Q+ P E + + Y++N L+L + A + LL AV
Sbjct: 262 LQLFPAARSTVCKIVSQKFPF---PSEHKSVYLCYLDNLLQLRNYAPK--LGPELLEAVT 316
Query: 227 DRLIDLDMEIGW----------DDILHDDFSKGIFEMELEDVEEAADDAEQ----VGDEL 272
L+ +D E +L+ SK + E + + ++ E G+
Sbjct: 317 SNLVKMDTEFQLDLSDMDDDLVSRVLYQVTSKDDDDDENDGDDADSEGDESDLPGFGEPD 376
Query: 273 PSGSLSRKSLSGNLIAEL------LDSLMVLTFEHLES-----CEGT--GRLIEFVMFYA 319
S+ S L+ +L L SL FE +S C G + FV+
Sbjct: 377 YDEEASKIDKSTKLVQKLDAILERLFSLFAPVFEDPDSEASQECLGDMMSDFVNFVLTVP 436
Query: 320 CALDPENCGLRFAT---MLADVFVSGL--------YPPLTRMSAVSYLASFLSRARFL-- 366
+ + F+ L D+F L P R +A SYL+S+++RA +
Sbjct: 437 SSRHTQFLVFHFSQRSLALQDIFTGTLLNLGFESNRPATVRQAAASYLSSYVARAARVPR 496
Query: 367 -SPCFIVSLLKRLVDWCL----EYCNILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMD 421
+ +VS+L +D E C G D+ + ++ YS QA++Y+ CFR R ++D
Sbjct: 497 DTVRNVVSILCHRIDMYRRSNSEGCR--GPDL--RRYQELYSWVQALLYIFCFRWRDLVD 552
Query: 422 -----------IPRLKSQLLLMP-----LETVLKHDLNPLKVCLPSVVSEFLQQSKAARL 465
+ ++ MP L V+ NPL VC P++VSEF + + + R
Sbjct: 553 SHPDIVDPDDPASFVGHEVEWMPGLKQALTNVIYSVFNPLMVCSPAIVSEFAKLAHSMRF 612
Query: 466 FT----------------VSETFVFNDLLESELSRAFGGLERLDM--FFPFDPCLLKKSD 507
VS + D L + +RL + FPFDP LL +S
Sbjct: 613 MYIFPRLESNKSIHLSQFVSGHYGNGDALREDAGYTVEDEKRLQLEGNFPFDPYLLPESK 672
Query: 508 RF 509
R+
Sbjct: 673 RW 674
>gi|154324210|ref|XP_001561419.1| hypothetical protein BC1G_00504 [Botryotinia fuckeliana B05.10]
Length = 675
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 39/201 (19%)
Query: 345 PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNI------LGGDINPKAH 398
P + R S+ +YLASF++R + P + ++ + L+ L++ + G D+ K +
Sbjct: 428 PAVLRQSSAAYLASFVARGAHVEPQVVRTVFE-LIGSNLDHIRMENELTCRGPDL--KKY 484
Query: 399 RVFYSGCQAIMYVLCFRMRSIMDIPR----------LKSQLLLMP-----LETVLKHDLN 443
FY+ QA++Y+ CFR R ++D + L+ P L + LN
Sbjct: 485 GTFYAMTQALLYIFCFRWRDLIDSSEVFDDEDPTAFIGQDLVWTPGIKETLSRAIYSKLN 544
Query: 444 PLKVCLPSVVSEF---------------LQQSKAARLFTVSETFVFNDLLESELSRAFGG 488
PLK+C P +VSEF L+ +K RL S L +S +
Sbjct: 545 PLKICSPPIVSEFAKIAHHLRFIYVYPLLETNKRIRLSQFSSAAGNGALRDSGNGASNDS 604
Query: 489 LERLDMFFPFDPCLLKKSDRF 509
+LD +FPFDP L S ++
Sbjct: 605 WHQLDAYFPFDPYQLPVSKKW 625
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 95/212 (44%), Gaps = 10/212 (4%)
Query: 28 HVREALTSVQSGDNDNYNQLVAVMHLSG---RLDPDNRALLETSLKALSGAVSYIDISHH 84
V+ A+ + GD++ Y+ + V + R D +T L AL+G S ++
Sbjct: 77 EVKRAIEAHSIGDSEKYDSIKEVFAQTEGDEREDTGANDEAKTYLLALTGYASLLN-KDC 135
Query: 85 ESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLK 144
L+ +I + + A + +L ++ G YV L LV NFT +L
Sbjct: 136 NGLVKAILKCDWMGREEAFVKAYAQFLGNLVSAQGAYVGLVLGTLVDNFTGVRVSSGRLP 195
Query: 145 EPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMEN 204
+ R + SRVH AL+ + L+P A L PI+ + P E ++ V Y+ N
Sbjct: 196 GCPDVNRD-TLSSRVHFALRYLLRLIPSASATLSPILSTKFPFA---DESKRVHVTYINN 251
Query: 205 TLKLESSAMGELVRSTLLMAVVDRLIDLDMEI 236
+++ A ++S + + DRL+ +D+++
Sbjct: 252 LVRVLEYA--PELKSDVFALITDRLVKIDVQM 281
>gi|347829777|emb|CCD45474.1| similar to RNA polymerase I-specific transcription initiation
factor rrn3 [Botryotinia fuckeliana]
Length = 675
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 39/201 (19%)
Query: 345 PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNI------LGGDINPKAH 398
P + R S+ +YLASF++R + P + ++ + L+ L++ + G D+ K +
Sbjct: 428 PAVLRQSSAAYLASFVARGAHVEPQVVRTVFE-LIGSNLDHIRMENELTCRGPDL--KKY 484
Query: 399 RVFYSGCQAIMYVLCFRMRSIMDIPR----------LKSQLLLMP-----LETVLKHDLN 443
FY+ QA++Y+ CFR R ++D + L+ P L + LN
Sbjct: 485 GTFYAMTQALLYIFCFRWRDLIDSSEVFDDEDPTAFIGQDLVWTPGIKETLSRAIYSKLN 544
Query: 444 PLKVCLPSVVSEF---------------LQQSKAARLFTVSETFVFNDLLESELSRAFGG 488
PLK+C P +VSEF L+ +K RL S L +S +
Sbjct: 545 PLKICSPPIVSEFAKIAHHLRFIYVYPLLETNKRIRLSQFSSAAGNGALRDSGNGASNDS 604
Query: 489 LERLDMFFPFDPCLLKKSDRF 509
+LD +FPFDP L S ++
Sbjct: 605 WHQLDAYFPFDPYQLPVSKKW 625
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 95/212 (44%), Gaps = 10/212 (4%)
Query: 28 HVREALTSVQSGDNDNYNQLVAVMHLSG---RLDPDNRALLETSLKALSGAVSYIDISHH 84
V+ A+ + GD++ Y+ + V + R D +T L AL+G S ++
Sbjct: 77 EVKRAIEAHSKGDSEKYDSIKEVFAQTEGDEREDTGANDEAKTYLLALTGYASLLN-KDC 135
Query: 85 ESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLK 144
L+ +I + + A + +L ++ G YV L LV NFT +L
Sbjct: 136 NGLVKAILKCDWMGREEAFVKAYAQFLGNLVSAQGAYVGLVLGTLVDNFTGVRVSSGRLP 195
Query: 145 EPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMEN 204
+ R + SRVH AL+ + L+P A L PI+ + P E ++ V Y+ N
Sbjct: 196 GCPDVNRD-TLSSRVHFALRYLLRLIPSASATLSPILSTKFPFA---DESKRVHVTYINN 251
Query: 205 TLKLESSAMGELVRSTLLMAVVDRLIDLDMEI 236
+++ A ++S + + DRL+ +D+++
Sbjct: 252 LVRVLEYA--PELKSDVFALITDRLVKIDVQM 281
>gi|340520015|gb|EGR50252.1| RNA polymerase I specific transcription factor [Trichoderma reesei
QM6a]
Length = 684
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 118/575 (20%), Positives = 230/575 (40%), Gaps = 100/575 (17%)
Query: 24 ELVYHVREALTSVQSGDNDNYNQLVAVM------HLSGRLDPDNRAL----LETSLKALS 73
E+ VR AL + GD+ Y+ L + +L + ++ L L+ L AL+
Sbjct: 75 EIKLEVRMALEAHLRGDDGQYDGLKEMFANDKKRYLPPVVGEEDDTLKPHELQVYLMALT 134
Query: 74 GAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNF 133
G + + L+ +I S D + + +L ++ G Y++ L M+V F
Sbjct: 135 GCIPILKSKDCNGLVKAILNCSWLGRDAAFVKVFTHFLAALVSAQGSYLNHVLAMIVDKF 194
Query: 134 ---TPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHN 190
P ++ + E + + R+H+AL+ + + P A + L ++ + P + +
Sbjct: 195 HDSRPSAWLVPDFPEI----SRDTMRDRLHSALQYLLKMFPSATSVLENLLRNKFPFLDD 250
Query: 191 KHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLD--MEIGWDDILHDDFSK 248
+++ + Y+ N L+++ ++ + ++DR++ +D M++ +D D +
Sbjct: 251 S---MRVHMAYIHNLLRVKDYVPD--LQEDIFDMILDRVVKIDSQMQLDLEDTDDDITAA 305
Query: 249 GIFEMELEDVEEAADDAEQVGDELPSG-------------SLSRKSLSGNL--IAELLDS 293
++ + E+ ++ A E D+ ++ K+L ++ + +LD+
Sbjct: 306 VMYALRTENPQQEAAGWEDEADDDSDTDSVDSDDADYDQDAVRIKTLKESVEKMDSMLDT 365
Query: 294 LMVLTFEHLESCEG----------------------TGRLIEFVMFYACALDPENCGLRF 331
L + H + R +F++F+
Sbjct: 366 LFEVYTPHFANPGSDKAFDMFVTILREFDQMVLPTYKSRHTQFLIFHFAQQHERLTDAFC 425
Query: 332 ATMLADVFVSGLYPPLTRMSAVSYLASFLSRA----RFLSPCFIVSLLKRLVDWCLEYCN 387
++A F S P + + +A +YLASF++R R L + L+ L + +Y
Sbjct: 426 GQLIASAFQSNT-PNILKQAAAAYLASFVARGAHVPRSLVRTIFMLLIHHLDQYRRKYEP 484
Query: 388 ILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDI------PRLKSQLLLMPLE------ 435
I G + H +YS QA +Y+ CFR + ++ P + + LE
Sbjct: 485 ICRGPDLKRFH-PYYSLVQATLYIFCFRWQDLVVSAPEFVDPEDPASYIGQDLEWIGTSR 543
Query: 436 ----TVLKHDLNPLKVCLPSVVSEF---------------LQQSKAARLFT-VSETFVFN 475
T + LNPLKVC P +V EF ++ +K RL +S T+
Sbjct: 544 KDLSTHIFGKLNPLKVCAPVIVEEFAKLAHRLNFMYAYPLIEGNKRIRLTQYLSSTYSTG 603
Query: 476 DLL-ESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
L +S +LD +FPFDP L S R+
Sbjct: 604 GALRDSGFDTQEESFHQLDPYFPFDPYQLPVSKRW 638
>gi|307197693|gb|EFN78860.1| RNA polymerase I-specific transcription initiation factor RRN3
[Harpegnathos saltator]
Length = 486
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 99/454 (21%), Positives = 177/454 (38%), Gaps = 85/454 (18%)
Query: 101 PDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVH 160
PD + A K + L + +Y S LV F P + K + + L+ +H
Sbjct: 39 PDFISAYKSFVEDLVCARVEYARSVFDYLVKLFKPVGEDNREHKTKELTLQDTERLNHIH 98
Query: 161 AALKSIFDLVPLAPTRLLPIVVQRMPTVHNK---HERLKMIVVYMENTLKLESSAMGELV 217
LK I +VP++ LL + P + + HE VY+ L + + +
Sbjct: 99 DMLKKILKVVPMSRKCLLYSIESEYPYITHSTYIHE------VYVHALLSI--THYAPYL 150
Query: 218 RSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSG-S 276
+S ++ V++ L LD+ I + + +D E+ D + D L + +
Sbjct: 151 KSDIIFIVINGLASLDVNIT--------------KNKTKDYEDLCDMIDSDSDNLATADN 196
Query: 277 LSRKSLSGNLIAELLDSLMVLTFEHLES-CEGTG-------------------------- 309
K+ LI LD M + E + C
Sbjct: 197 HEDKTEHVQLIEHTLDVCMDIFLEFMHKFCYINNVDLNKENLKILYQDILATFDKVLLRI 256
Query: 310 ---RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFL 366
+ ++++ FY C++ P L + L S P+ R AVSY++S ++ A ++
Sbjct: 257 DRTQYVQYIGFYLCSIKPALTAL--ISHLWKKVTSWDEAPVIRQLAVSYISSLVATASYI 314
Query: 367 SPCFIVSLLKRLVDWCLEYCNILGGD------INPKAHRVFYSGCQAIMYVLCFRMRSIM 420
+ + + R +W +Y +G D ++ K H VFYS CQA Y+ +
Sbjct: 315 TSETLKVTICRFTNWIHDY---IGMDETTDNYVDLKLHNVFYSVCQAFFYLFVAKHE--- 368
Query: 421 DIPRLKSQLLL---MPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDL 477
++ + + +L + + ++ LNPL VC +V F +K +L + D
Sbjct: 369 ELTKTRCNILFVQQLDIPKIISCKLNPLVVCNGKIVRSFADITKMYQL-------AYCDA 421
Query: 478 LESELSRA----FGGLE-RLDMFFPFDPCLLKKS 506
+ + +R FG E L FFPF+ L+ S
Sbjct: 422 IIEDNTRKQLPIFGEEELLLPDFFPFESYTLEHS 455
>gi|410079010|ref|XP_003957086.1| hypothetical protein KAFR_0D03030 [Kazachstania africana CBS 2517]
gi|372463671|emb|CCF57951.1| hypothetical protein KAFR_0D03030 [Kazachstania africana CBS 2517]
Length = 627
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 130/545 (23%), Positives = 213/545 (39%), Gaps = 107/545 (19%)
Query: 45 NQLVAVMHLSGRLDPDNRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPD-V 103
NQL + R++P+N +L L LS ++ ID + +L+ SI W P
Sbjct: 86 NQLSFPVKSPERINPENLNVL---LDILSSNINKIDSTRGNNLIQSIINFEKWWELPSPS 142
Query: 104 MDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAAL 163
++ I L +S K+ L+SN T P L K E H++LS +
Sbjct: 143 LNKYMFFIRILCSSIPKWWQDVSLNLISNMTLP---LSKT------ESHHEILSYFLKMI 193
Query: 164 KSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLM 223
S + + + P NK++ K IV Y+ N LKL S + +R +
Sbjct: 194 PSSINFIDSYLVKFFP----------NKNDTKKKIVNYVSNMLKLISYC--KELRFQIWS 241
Query: 224 AVVDRLIDLDMEIGWD-DILHDDFSKGIFEMELEDVE-------------------EAAD 263
+++R+I +D+E+ + D + DD E E ED E E+ D
Sbjct: 242 LIIERVISIDVELQNELDEMDDDIEDNFEESEDEDDEDDENDDDEDDELLNDVGGVESDD 301
Query: 264 DAEQVGDELPSGSLSRKSLSGNL-IAEL---LDSLMV---------LTFEHLESCEGTG- 309
+++ ++ ++ I EL LDS+M+ LT E LES EG G
Sbjct: 302 ESKLDEEDDEMEGDEEYNVEATQGIKELSLKLDSIMMIVSDCIGKELTPESLESGEGIGI 361
Query: 310 ------------------RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMS 351
R I+++MF+ PE F L D S ++
Sbjct: 362 FNTLITLFKTHILPTYYTRSIQYIMFHISQQQPELMD-SFLVTLIDTSFSTNETSEKKIK 420
Query: 352 AVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINP----KAHRVFYSGCQA 407
++ YL S+++RA+ LS IV + + W Y +++ + + FY+ QA
Sbjct: 421 SLQYLGSYIARAKRLSRQQIVFVASYITSWLNRYVIEREEEVDQPGGMERFKHFYAAFQA 480
Query: 408 IMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVV---SEFLQQSKAAR 464
+ Y+ CFR D L + ++ NPLK C +V+ ++ Q+ A
Sbjct: 481 LCYIFCFRHNFFKDQDGNWEIELDKFFQRMIISKFNPLKYCNENVMLMFAKITQKEDIAY 540
Query: 465 LFTVSETFVFNDLLESELSRA----------------FGGLER-----LDMFFPFDPCLL 503
F++ E N+ L + +A + R L +FPFDP L
Sbjct: 541 CFSIIEK-NNNERLRGIMGKADNPGSDSKKQLASASTWSLATRQQFIDLQSYFPFDPLFL 599
Query: 504 KKSDR 508
K R
Sbjct: 600 KNYKR 604
>gi|169861684|ref|XP_001837476.1| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Coprinopsis cinerea okayama7#130]
gi|116501497|gb|EAU84392.1| ribosomal DNA transcription factor Rrn3 [Coprinopsis cinerea
okayama7#130]
Length = 799
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 104/259 (40%), Gaps = 65/259 (25%)
Query: 309 GRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPP--------------LTRMSAVS 354
R +F++F+ +LDPE + F ML D L+ P + R +A S
Sbjct: 442 SRYTQFLLFWYTSLDPEFADI-FQGMLVD---RALFSPSDTGSSSGPSSTAEVNRAAAAS 497
Query: 355 YLASFLSRARFLSPCFIVSLLKRLVDW-----------CLEYCNILGGDINPKAHRVFYS 403
Y+ SF+SRA F+ ++ L D+ E+ + H VFY+
Sbjct: 498 YIGSFVSRATFVDREGTRRVVGVLCDYLGAHLDGVDEAIREHGPSWIANTTSAQHTVFYA 557
Query: 404 GCQAIMYVLCFRMRSIMDIPRLKSQLL----------------LMPLETVLKHDLNPLKV 447
QA+ + CFR R + + ++L L L+ V+ LNPLKV
Sbjct: 558 VTQAVFLIFCFRWRDLQEDLEFDDEVLSTVVGAKVAKDKWIPHLQVLKRVVLSVLNPLKV 617
Query: 448 CLPSVVSEF---LQQSKAARLFTVSETFVFNDLLESELSRAFGGLER------------- 491
C VV +F QQ+ ++V E+ N E + + G R
Sbjct: 618 CSSGVVEQFAKVAQQTDFMYCYSVLES---NKRSEYSGANSNGSPSRSMHPSFLRGRLND 674
Query: 492 -LDMFFPFDPCLLKKSDRF 509
L+ FFPFDP L KS+ F
Sbjct: 675 ELNTFFPFDPYRLPKSNSF 693
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 100/224 (44%), Gaps = 17/224 (7%)
Query: 22 DLELVYHVREALTSVQSGDNDNYNQLVAVMHL----SGRLDPDNRALLETSLKALSGAVS 77
D+ L + V AL G + +N+LV L +G L + ALS VS
Sbjct: 48 DMYLAF-VNNALQEQSQGKSGPFNELVNQFSLKPSSNGEPPQTQPGQLRFWILALSHVVS 106
Query: 78 YIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPS 137
++ H +L+ +I M D + + I L ++ +Y+ L+ +V FT S
Sbjct: 107 RLE-RRHSALVEAIVNMPWMTLDSATVKSYTVFIGMLLSARPEYLSLVLSKIVQGFTHQS 165
Query: 138 YF--LDKLKEPHGLER---KHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKH 192
LD L P G + + + R+H L I L+P P+ L PI+V+ P H +
Sbjct: 166 GIQALD-LAMPEGSSKPLTRRLIYDRLHYLLNHILSLIPTLPSTLQPILVRYFP--HKRQ 222
Query: 193 ERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEI 236
+L Y+ N L++ SA + +L ++DR I +D+EI
Sbjct: 223 NQLAQ-ATYIRNLLRI--SAYCPALTDKILATIIDRAIQIDVEI 263
>gi|358059753|dbj|GAA94522.1| hypothetical protein E5Q_01174 [Mixia osmundae IAM 14324]
Length = 888
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 77/321 (23%), Positives = 128/321 (39%), Gaps = 69/321 (21%)
Query: 255 LEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGT------ 308
L + EE D + E G++ R+ S + AE L+ F+ L + T
Sbjct: 484 LTEAEEDDDSSTASESEADDGAILRQPRSRTITAEDLNEQKRAVFDALLTSFDTHILQTF 543
Query: 309 -GRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLS 367
R ++F++F++ +L PE ++ + P R+++ +YL SF+SRA+F
Sbjct: 544 NTRHVQFLLFWSVSLSPEYTDDFTGALIERILFKTDAPNYIRVASAAYLGSFVSRAKFFD 603
Query: 368 PCFIVSLLKRLVDWCLEYCNIL----GGDINPK--AHRVFYSGCQAIMYVLCFRMRSI-- 419
++++ + + E + L G + P + VFY+ QA+MY+ CFR R +
Sbjct: 604 QDGARTVVRIMCQYISEQLSHLEPTQSGYVIPAYAQYTVFYAVVQAVMYIFCFRWRELLL 663
Query: 420 ---------MDIPRLKSQLLLMP-----LETVLKHDLNPLKVCLPSVVSEFLQQSKAARL 465
M + + P L+ + LNPL +C VV +F + S + L
Sbjct: 664 EDEDPVGEAMSPEMGPTGARVWPPELDALKAAVDSPLNPLAICSAPVVEQFARISHSTGL 723
Query: 466 ---FTVSETF--------------------------------VFNDLLESELSRAFGGLE 490
+TV ET V N +L+ L+ A
Sbjct: 724 MYCYTVLETNKRHASSSTSSHASPTKPKPGSQRSVGIANQGPVHNAMLKHALAEA----- 778
Query: 491 RLDMFFPFDPCLLKKSDRFAN 511
R D FPFDP L S + N
Sbjct: 779 RFDTHFPFDPFKLPLSGVYVN 799
Score = 42.0 bits (97), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 85/209 (40%), Gaps = 25/209 (11%)
Query: 69 LKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTM 128
L+ALS S +D SH L+ +I + + ++ A SL +++ S L
Sbjct: 195 LEALSECTSKLDKSHR-VLVDAILTLPWFTWEEQPRRAWGKFTRSLVLVRSEWLGSVLER 253
Query: 129 LVSNF-----------TPPSYFLDKLKEPH----GLERKHQVLSRVHAALKSIFDLVPLA 173
V + + +L P G + +V R H L S+ D +P
Sbjct: 254 AVKSLRYNTLVGLNVKSSQDTAGARLPRPSSLVGGALTRREVYDRQHGFLHSLCDYIPTL 313
Query: 174 PTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLD 233
P+ L PI+ P + ER + + Y N L++ L ST+L V+ + + LD
Sbjct: 314 PSTLAPILQTHFPP---RRERKEYHMTYYRNVLRVIEYCPDLL--STVLGLVISKAVKLD 368
Query: 234 MEIGWD-DILHDD---FSKGIFEMELEDV 258
EI + + L DD S+ IF+ D
Sbjct: 369 AEITQEVETLADDEGKLSEQIFQCSARDT 397
>gi|357625575|gb|EHJ75974.1| transcription initiation factor RRN3 [Danaus plexippus]
Length = 342
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 129/294 (43%), Gaps = 24/294 (8%)
Query: 222 LMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSRKS 281
+ +V +++DLD + D + + IF+ME++ +E ++ + E+ +
Sbjct: 1 MTVIVSKMVDLDANVVDRD---KNKQETIFDMEIDGKDEVSETLDYCMLEILKWLEDERD 57
Query: 282 LSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFAT--MLADVF 339
N+ + + +++ T G R ++F++ Y ++ + C R T L
Sbjct: 58 PVLNIFCNVFERVVLPT-------HGI-RHVQFLILYTISIS-QQCADRIFTNLWLVAAG 108
Query: 340 VSGLYPPL--TRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDI---N 394
+ GL P TR +A S+LA L+R + ++ L+ + DWC Y N
Sbjct: 109 LHGLGPGALATRRTAASHLAGLLARCVRVPNSRLIQYLRLMADWCHSYLTATQESTVADN 168
Query: 395 PKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVS 454
K H F++ C AI Y++ F+ + + + + L ++ +LNPL+ C P V
Sbjct: 169 TKVHGAFHAICHAIFYLVAFKNHHLFVNKESINFVESLNLPRLVTCNLNPLRTCPPQVTR 228
Query: 455 EFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDR 508
F +++ ++ N S L A +++ D +FP+DP L S +
Sbjct: 229 AFSSVTRSHQVVYCQAIIEKN--TRSTLQNA---VQKYDEWFPYDPYTLPISGK 277
>gi|302696657|ref|XP_003038007.1| RNA polymerase I-specific transcription initiation factor RRN3
family protein [Schizophyllum commune H4-8]
gi|300111704|gb|EFJ03105.1| hypothetical protein SCHCODRAFT_63321 [Schizophyllum commune H4-8]
Length = 674
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 144/600 (24%), Positives = 249/600 (41%), Gaps = 123/600 (20%)
Query: 3 VELPIDHAESHEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNR 62
V PI ++ D+ L + V AL G+++ Y++LV+ R D +N+
Sbjct: 30 VRRPIATNSRIRQDEQYRKDMYLAF-VNNALQQKLEGNSEPYDELVSQFD-PKRFDQENQ 87
Query: 63 ---ALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNG 119
+ L + ALS VS ++ +H SL+ +I + D + + L ++
Sbjct: 88 PQTSQLRFWILALSHVVSRLERAH-ASLVEAIVNVPWTTMDSSSVKSFTVFFGMLLSAKP 146
Query: 120 KYVDSCLTMLVSNFTPPSYF--LDKLKEPHGLER---KHQVLSRVHAALKSIFDLVPLAP 174
+Y+ L + FT S LD P G + + V R+H L+ + L+P
Sbjct: 147 EYLSLVLGKVAQGFTHQSGLQALDS-AVPEGSSKPLTRRVVYDRLHNLLQHVLSLIPTLS 205
Query: 175 TRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDM 234
+ LLP++V+ P H + ++ Y+ N L++ S EL +L +VDR I +D+
Sbjct: 206 STLLPLLVRNFP--HKRQSQISQ-STYIRNLLRI-SGYCPELA-DKILATIVDRAIQIDV 260
Query: 235 EIG-------WDDILHDDFSKGIFEME----------------------LEDVEEAADDA 265
EI ++ + + +FE++ ++++ + + DA
Sbjct: 261 EIQVELEELEDEEGDDANQDQDLFEIDPFDTLVGQDAEDSDSDSDSDDGIDNLSDISSDA 320
Query: 266 EQVGDEL-----------------------PSGSLSRKSLSGNLIAELL---DSLMVLTF 299
E+ D P SR +L LL D ++ TF
Sbjct: 321 EEDEDSPDVPTNVKHIQEMVTKLDSILTLPPQTPASRAALRRTQFHTLLAIFDRTILRTF 380
Query: 300 EHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASF 359
+ R +F++F+ +LD E L ++ + P +TR +A SY+ SF
Sbjct: 381 K--------SRYTQFLLFWFASLDAELADLFAGVLVERALLRPDAPAVTRAAAASYIGSF 432
Query: 360 LSRARFL---SPCFIVSLLKRLVDWCLEYCNILGGDINPKA-----------HRVFYSGC 405
+SRAR++ S +V++L C LG ++ A + V+Y+
Sbjct: 433 VSRARYVDRESARRVVAVL----------CGFLGAHLDAIADTDTYTTSAAENTVWYAVA 482
Query: 406 QAIMYVLCFRMRSIMDIPRLKSQLL----LMP----LETVLKHDLNPLKVCLPSVVSEFL 457
QA+ + CFR R +++ L + L MP L V+ LNPL+VC +VV +F
Sbjct: 483 QAVFLIFCFRWRDLLEDEELVLEELGTRKWMPALDVLHRVVNAPLNPLRVCSQNVVLQFA 542
Query: 458 QQSKAARLFTVSETFVFNDLLESELSRAFGGLER-----LDMFFPFDPCLLKKSDRFANA 512
+ + A V+ + F +LE+ A G R L FFPFDP L +S + A
Sbjct: 543 RVAHA-----VNFMYCF-PVLEANRRSADDGAARERDAELHTFFPFDPYKLPRSGPYIQA 596
>gi|45185203|ref|NP_982920.1| ABL027Wp [Ashbya gossypii ATCC 10895]
gi|44980861|gb|AAS50744.1| ABL027Wp [Ashbya gossypii ATCC 10895]
gi|374106123|gb|AEY95033.1| FABL027Wp [Ashbya gossypii FDAG1]
Length = 625
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 112/488 (22%), Positives = 196/488 (40%), Gaps = 91/488 (18%)
Query: 28 HVREAL----TSVQSGDNDNY-NQLVAVMHLSGRLDPDNRALLETSLKALSGAVSYIDIS 82
++R+AL TS +G D NQL R+ +N A+L L+ L ++ ID
Sbjct: 61 YIRDALDDLETSKDTGKLDTIANQLSLSASSPDRISAENFAIL---LEMLGNNITKIDNK 117
Query: 83 HHESLLVSIFGM-SMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLD 141
+++ ++ W+ P + + L +S K+ +L+SNF P +D
Sbjct: 118 RGVAIVRAVLNFEKWWDLPPLTLGNYVFFLQILCSSIPKWWQDVSMLLISNFRLP---VD 174
Query: 142 KLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVY 201
K KH H LK +P + + + + P NK++ K +V Y
Sbjct: 175 KTT-------KH------HEILKYFLRAIPSSSNFIDSYIAKYFP---NKNDSKKNLVNY 218
Query: 202 MENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEI------------------------G 237
+ N L L + E +R +++++I +D+E+ G
Sbjct: 219 ISNVLTL--TEYCEELRFQAWSMIIEKIIAVDVELQNELDELDDDVDEEIDDKLADSDDG 276
Query: 238 WDDILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSR--KSLSGNL--IAELLDS 293
D++ DD + +D ++D + G+E + ++R K LS L I +L +
Sbjct: 277 EDELPGDDDAAEASTHSADDTSFDSEDEQLEGNEEYNIEVTRNIKELSKKLDVILSMLTT 336
Query: 294 LM--VLTFEHLESCEGTG-------------------RLIEFVMFYACALDPENCGLRFA 332
+ LT E LES EG R ++++MF+ P+ F
Sbjct: 337 RLSDALTPETLESGEGVNTFNTLVSLFKSHILPTYYTRSVQYLMFHVSQQQPQLMDA-FL 395
Query: 333 TMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEY------- 385
L D+ S ++ ++ YL SF++RA+ L+ I + L W Y
Sbjct: 396 VTLIDIAFSPNETMEKKIKSLQYLGSFIARAKKLTHTQITFVASYLTSWLNRYVLEREEE 455
Query: 386 CNILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPL 445
++ GG ++ H FY+ QA+ Y+ CFR D + + TV+ NPL
Sbjct: 456 VDLPGG-MDRFKH--FYAAFQALCYIFCFRHALFRDGNAWECDIDAFFQRTVISK-FNPL 511
Query: 446 KVCLPSVV 453
K C +V+
Sbjct: 512 KYCNENVM 519
>gi|410050078|ref|XP_003315055.2| PREDICTED: putative RRN3-like protein FLJ77916-like [Pan
troglodytes]
Length = 262
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 72/146 (49%), Gaps = 20/146 (13%)
Query: 333 TMLADVFVSGLY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLE 384
T A+ F+ L+ P + R +A +Y+ SFL+RA+F+ + S LV+W
Sbjct: 112 TGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLTTVKSCPDLLVNWLHI 171
Query: 385 YCNILGGDINPKA------HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP---LE 435
Y N D KA H FYS CQA+ Y FR + ++ LK L + E
Sbjct: 172 YLN--NQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSG-NLKEGLQYLQSLNFE 228
Query: 436 TVLKHDLNPLKVCLPSVVSEFLQQSK 461
++ LNPLK+CLPSVV+ F +K
Sbjct: 229 RIVMSQLNPLKICLPSVVNFFAAITK 254
>gi|260945663|ref|XP_002617129.1| hypothetical protein CLUG_02573 [Clavispora lusitaniae ATCC 42720]
gi|238848983|gb|EEQ38447.1| hypothetical protein CLUG_02573 [Clavispora lusitaniae ATCC 42720]
Length = 478
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 79/346 (22%), Positives = 146/346 (42%), Gaps = 61/346 (17%)
Query: 160 HAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRS 219
H L+ I + P + + P++ + +P H+ I YM N +K+ S ++
Sbjct: 100 HTILRKIINFTPTCISSIPPVLAKNLP--HHLSASTNEITNYMRNAMKVISYCPD--LQF 155
Query: 220 TLLMAVVDRLIDLDMEIGWD-DILHDDFSKGIFEMELEDVEEAA---------------- 262
++ VV+ I LD+E+ + D L DD + + + + EE +
Sbjct: 156 SIWQLVVECCIKLDVELQNELDNLDDDSIEELINGDANEFEENSDFENLDDEDDEDGEVY 215
Query: 263 ---------------DDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEG 307
D A ++ ++ S S +R+ + L ++L L H+
Sbjct: 216 TMTSTKNIKKMVSKLDSALELLLQMTSSSFTREEIENGNGVTLFNTLTSLFRSHILPTHF 275
Query: 308 TGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLS 367
T + I+F++F+ PE + +L DV + R+ A+ YL+S+++RA+ L+
Sbjct: 276 T-KSIQFLLFHISQYQPE-LADAYLVLLIDVAFNPNETTEKRLKALQYLSSYIARAKNLT 333
Query: 368 PCFIVSLLKRLVDWCLEYC-------------NILGGDINPKAHRVFYSGCQAIMYVLCF 414
IV + L+ W +Y N GG + ++FY+ QA++Y+ CF
Sbjct: 334 KHQIVFIASYLIGWLNKYITEREHEVFDFDNENSSGG---MERFKLFYATFQALLYIFCF 390
Query: 415 R----MRSIMDIPRLKSQL---LLMPLETVLKHDLNPLKVCLPSVV 453
R ++S DI S+ + + V+ NPLK C +VV
Sbjct: 391 RHKHLIKSADDIANGDSEWECDIDRFFQRVIIAKFNPLKYCDETVV 436
>gi|254574188|ref|XP_002494203.1| Protein required for transcription of rDNA by RNA polymerase I
[Komagataella pastoris GS115]
gi|238034002|emb|CAY72024.1| Protein required for transcription of rDNA by RNA polymerase I
[Komagataella pastoris GS115]
Length = 579
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 114/511 (22%), Positives = 197/511 (38%), Gaps = 110/511 (21%)
Query: 72 LSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVS 131
LS + ID L+ + + D D+ + L +++ K+V ++ LVS
Sbjct: 88 LSSEIGKIDTRKCHGLIQGLLNVE--TKDSDLSTTYCKFLCVLVSASPKWVVEIVSKLVS 145
Query: 132 NFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNK 191
F + L +H LK I +VP + + + ++ P N+
Sbjct: 146 RFVEGNVKL------------------LHDTLKYIISVVPTSTNIIQKQLAKKFP---NR 184
Query: 192 HERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIF 251
+++ K +V Y+EN L + S +L S + +V+ I LD+E+ I
Sbjct: 185 NDKKKYLVHYVENLLYV-SEYCPQLGLSCWSL-IVENCIKLDVEL----------QNEIE 232
Query: 252 EMELEDVE-----EAADDAEQVG-------------------------DELPSGSLSRKS 281
E + ED+E E DD E DE P +
Sbjct: 233 EADDEDLEAMEGTEDGDDNENDSDSASEDDDSDDDEDDADDFDESVALDEGPEA-IDVAD 291
Query: 282 LSGNL------IAELLDSLMV-------LTFEHLESCEGT-------GRLIEFVMFYACA 321
LS L + + DS V +TF +L S T R++++++F+
Sbjct: 292 LSAKLDSIMMILMKTTDSYFVSSDDKPLITFNNLISMFRTHILPTHYTRVVQYLLFHVTQ 351
Query: 322 LDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDW 381
E F L DV R+ ++ YLAS+++RA+ +S IV ++ L+ W
Sbjct: 352 YQSELMD-SFLVTLIDVAFQPKEMVSKRIKSMQYLASYMARAKNVSKSQIVFIISYLISW 410
Query: 382 CLEYCNILGGDINP----KAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETV 437
+Y + +IN ++FYS Q+++Y+ CFR S+ L + V
Sbjct: 411 IEKYIHEREEEINDGRGMDRFKMFYSVFQSVLYIFCFRYSSLKTDANTWECNLDKFFQRV 470
Query: 438 LKHDLNPLKVCLPSVV---SEFLQQSKAARLFTVSE-------------TFVFNDLLESE 481
+ NPLK C +VV + Q+ +++ E T N S
Sbjct: 471 IMSKFNPLKFCNDNVVLIFARISQEQDICYCYSIIESNKCERRKGLTGSTSSTNPTTGSG 530
Query: 482 LSRAFGGLER---LDMFFPFDPCLLKKSDRF 509
+S + L +FPFDP L+++ +F
Sbjct: 531 ISWDLTSKQEFSDLAAYFPFDPLFLRRTAKF 561
>gi|380096421|emb|CCC06469.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 653
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 129/574 (22%), Positives = 224/574 (39%), Gaps = 114/574 (19%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGR--------LDPDNRALLETSLKALSGAVSYID 80
V++AL GD+++Y+ L + S + D L+ + AL+ V +D
Sbjct: 17 VKQALEGHARGDDEDYDGLKEIFCPSPKRTIVEEEDADTPQPQDLQVYVVALTSHVPLLD 76
Query: 81 ISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTP----- 135
S L+ ++ + + D A L+ +L+A + L+M+V FT
Sbjct: 77 RSC-SGLIRAVLSCTWLDRDDVFARAYIQLLAALSAKVS-FRQQVLSMMVEKFTETRSST 134
Query: 136 ----PSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNK 191
P + P E K + R+H LK + +L A +L IV P H +
Sbjct: 135 VEVVPGF------PPVDSETKKE---RLHLGLKYLLELYADARPMILDIVTHNFP--HTE 183
Query: 192 HERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIF 251
+ + + Y+++ L+L++ +L R + + ++ RL+ LD+E+ D DD +
Sbjct: 184 ESKTRHME-YIDHLLRLKADK-PDLERDIMEL-ILSRLVKLDVEMTLDLENDDDETTRAV 240
Query: 252 EMELEDVEEAADDAEQ---------VGDELPSGSLSRKSLSGNLIAELLDSLMVLTF--- 299
+LE +DD + DE S +R+ L E +D+++ L F
Sbjct: 241 LRQLEASNAKSDDEDDDAMSEADSDDEDEEESDEQTRRILLLKSKLETMDAILDLMFSIY 300
Query: 300 ----------EHLESCEG-------------TGRLIEFVMFYACALDPENCGLRFATMLA 336
E L + E R ++++F A+ F L
Sbjct: 301 DPVFADPDSPEALATFEDLLTDFVNVILPHLKSRHTQYLLF-KFAMKSNRLMEMFIGTLF 359
Query: 337 DVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPK 396
++ P+ + +AV+YLASF +R + + + + +D+ Y N P
Sbjct: 360 NIAFQSTRAPVVKQAAVAYLASFTARGARVQSDQVQLIAQTFLDYIDHYRNTHTSCRGPD 419
Query: 397 AHRV--FYSGCQAIMYVLCFRMRSIMD--------------------IPRLKSQLLLMPL 434
R +Y+ Q ++Y+ CFR R ++D +P +K L L
Sbjct: 420 IRRYSQYYAYFQGLLYIFCFRWRDLIDRDEIPATFDWDDPASFLGQDLPWMKG--LRQRL 477
Query: 435 ETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTV------SETFVFNDLLESELSRAFGG 488
+ + LNPLK C P +V EF + S RL + ++T + S S A GG
Sbjct: 478 QVNIASKLNPLKCCSPIIVDEFARLSHHLRLIYIYPQIEKNKTIHLSQFFTS--SYATGG 535
Query: 489 LERLDMF-------------FPFDPCLLKKSDRF 509
R F FPFDP L + R+
Sbjct: 536 ALRDSGFEFDHENWTHIEACFPFDPFQLPVAKRW 569
>gi|380475334|emb|CCF45304.1| RNA polymerase I specific transcription initiation factor RRN3
[Colletotrichum higginsianum]
Length = 689
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 117/259 (45%), Gaps = 45/259 (17%)
Query: 293 SLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLR--FATMLADVFVSGLYPPLTRM 350
+L+V +F + R +F++F+ + + LR F L +F S P R
Sbjct: 389 ALLVQSFGKIVLPTYKSRHTQFLLFHFGQM---SARLRDTFVGSLMHIFGSQNRPSFVRQ 445
Query: 351 SAVSYLASFLSRARFLSPCFIVS----LLKRLVDWCLEY-CNILGGDINPKAHRVFYSGC 405
+A +YLA F++R + + + LLK++ + L++ + G D+ + H+++Y+
Sbjct: 446 AAATYLAGFMARGAHVPSDLVRTVFALLLKQMQIYRLKHDPDARGPDL--RRHQIYYAQV 503
Query: 406 QAIMYVLCFRMRS-IMDIPR----------LKSQLLLMP-----LETVLKHDLNPLKVCL 449
QA +Y+ CFR R I+ P L +L M L + +NPLK+C
Sbjct: 504 QAALYMFCFRWRDLIVSTPEFVDRDDPASYLGHELEWMQGMREELSASVYCKMNPLKICA 563
Query: 450 PSVVSEF---------------LQQSKAARLFT-VSETFVFNDLLESELSRAFG-GLERL 492
P++V EF ++++K RL VS+T+ L S A +L
Sbjct: 564 PAIVEEFATLAHKLGLMYIFPRVEENKRIRLSQFVSDTYGMGGALRDTGSGAQDEEAYQL 623
Query: 493 DMFFPFDPCLLKKSDRFAN 511
D +FPFDP L S R+
Sbjct: 624 DPYFPFDPYQLPVSKRWVQ 642
>gi|402592097|gb|EJW86026.1| hypothetical protein WUBG_03063 [Wuchereria bancrofti]
Length = 629
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 95/397 (23%), Positives = 152/397 (38%), Gaps = 84/397 (21%)
Query: 162 ALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTL 221
L I P+A L+ I+ QR P H+ ++ V Y+ N + + + R +
Sbjct: 162 GLTFIVKCFPVATKSLVKIIRQRFP--HHSASSIRY-VSYVRNLILICQNITQ--CREDI 216
Query: 222 LMAVVDRLIDLDM-----------EIGWDDILHDDFSKGIFEMELEDVEEAADDAEQVG- 269
L + D L LD E DD L+ +E + +V++ D E++
Sbjct: 217 LSIITDGLAQLDAVLTKAENSSREEDSCDDGLNVFLLDEEYERNVNEVQDNNDKVEKLDI 276
Query: 270 ---------------------DELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGT 308
D LPS +K +L L+V+ EHL G
Sbjct: 277 CMSLMFDYIGKLCSQENSTEIDWLPSTPRQKK---------ILKELLVVFEEHLLMAHGL 327
Query: 309 GRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMS-----------AVSYLA 357
+ I F+ FY C+LD T F+S L+ +TR++ A Y++
Sbjct: 328 -KNISFLWFYVCSLD---------TSYQKNFLSWLWSFITRLNQTPNDWKKAQGAACYIS 377
Query: 358 SFLSRARFLSPCFIVSLLKRLVDWCLEYCN-----ILGGDINPKAHRVFYSGCQAIMYVL 412
S LSRA +++ + L+ L WC Y N G H FY+ QA +
Sbjct: 378 SMLSRASYINLSTTMEWLEVLSHWCTTYVNEMVDRTTGATAGSTRHGTFYAVFQAFLVAF 437
Query: 413 CFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETF 472
CFR R I+ + +++ L ++ L PL V F S++ +L V
Sbjct: 438 CFRYREIVQAKEV-AKIHHWGLGHIVHSTLEPLSYISHPVALCFATISRSVQLVYV---- 492
Query: 473 VFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
N +L ++ + + + FPFD LK S F
Sbjct: 493 --NHILPAKPAE----MMPFESHFPFDSYSLKGSLSF 523
>gi|344236902|gb|EGV93005.1| RNA polymerase I-specific transcription initiation factor RRN3
[Cricetulus griseus]
Length = 224
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 60/122 (49%), Gaps = 11/122 (9%)
Query: 398 HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP---LETVLKHDLNPLKVCLPSVVS 454
H FYS CQA+ Y FR + I+ LK L + E V+ LNPLK+CLPSVV+
Sbjct: 19 HGPFYSACQAVFYTFVFRHKQILS-GNLKEGLRYLQSLNFERVVLSQLNPLKICLPSVVN 77
Query: 455 EFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER-------LDMFFPFDPCLLKKSD 507
F + +L N + R+ G + LD FFPFDPC+LK+S
Sbjct: 78 FFAAVTNKYQLVFCYTIMERNSRQMLPVIRSTAGGDSVQTCTNPLDTFFPFDPCVLKRSK 137
Query: 508 RF 509
+F
Sbjct: 138 KF 139
>gi|328353977|emb|CCA40374.1| RNA polymerase I-specific transcription initiation factor RRN3
[Komagataella pastoris CBS 7435]
Length = 542
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 114/511 (22%), Positives = 197/511 (38%), Gaps = 110/511 (21%)
Query: 72 LSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVS 131
LS + ID L+ + + D D+ + L +++ K+V ++ LVS
Sbjct: 51 LSSEIGKIDTRKCHGLIQGLLNVE--TKDSDLSTTYCKFLCVLVSASPKWVVEIVSKLVS 108
Query: 132 NFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNK 191
F + L +H LK I +VP + + + ++ P N+
Sbjct: 109 RFVEGNVKL------------------LHDTLKYIISVVPTSTNIIQKQLAKKFP---NR 147
Query: 192 HERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIF 251
+++ K +V Y+EN L + S +L S + +V+ I LD+E+ I
Sbjct: 148 NDKKKYLVHYVENLLYV-SEYCPQLGLSCWSL-IVENCIKLDVEL----------QNEIE 195
Query: 252 EMELEDVE-----EAADDAEQVG-------------------------DELPSGSLSRKS 281
E + ED+E E DD E DE P +
Sbjct: 196 EADDEDLEAMEGTEDGDDNENDSDSASEDDDSDDDEDDADDFDESVALDEGPEA-IDVAD 254
Query: 282 LSGNL------IAELLDSLMV-------LTFEHLESCEGT-------GRLIEFVMFYACA 321
LS L + + DS V +TF +L S T R++++++F+
Sbjct: 255 LSAKLDSIMMILMKTTDSYFVSSDDKPLITFNNLISMFRTHILPTHYTRVVQYLLFHVTQ 314
Query: 322 LDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDW 381
E F L DV R+ ++ YLAS+++RA+ +S IV ++ L+ W
Sbjct: 315 YQSELMD-SFLVTLIDVAFQPKEMVSKRIKSMQYLASYMARAKNVSKSQIVFIISYLISW 373
Query: 382 CLEYCNILGGDINP----KAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETV 437
+Y + +IN ++FYS Q+++Y+ CFR S+ L + V
Sbjct: 374 IEKYIHEREEEINDGRGMDRFKMFYSVFQSVLYIFCFRYSSLKTDANTWECNLDKFFQRV 433
Query: 438 LKHDLNPLKVCLPSVV---SEFLQQSKAARLFTVSE-------------TFVFNDLLESE 481
+ NPLK C +VV + Q+ +++ E T N S
Sbjct: 434 IMSKFNPLKFCNDNVVLIFARISQEQDICYCYSIIESNKCERRKGLTGSTSSTNPTTGSG 493
Query: 482 LSRAFGGLER---LDMFFPFDPCLLKKSDRF 509
+S + L +FPFDP L+++ +F
Sbjct: 494 ISWDLTSKQEFSDLAAYFPFDPLFLRRTAKF 524
>gi|378727612|gb|EHY54071.1| hypothetical protein HMPREF1120_02248 [Exophiala dermatitidis
NIH/UT8656]
Length = 691
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 91/231 (39%), Gaps = 44/231 (19%)
Query: 309 GRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSP 368
R +F++F+ DP RF T V V P L R SA +Y + F+ R +SP
Sbjct: 402 ARHPQFLVFHFAQSDPIIVD-RFVTSCVAVLVDKRQPHLLRHSAAAYFSGFVGRGAHVSP 460
Query: 369 CFIVSLLKRLVDWCLEYCNILGGDINP-------KAHRVFYSGCQAIMYVLCFRMRSIMD 421
+ L L D + IL P K + FY+ QAI+Y+ CFR R I
Sbjct: 461 QVVQDCLNLLCD----HLTILRKSYEPGCRGPDIKRYGDFYAAFQAILYIFCFRWRDIAS 516
Query: 422 IPRLK----------------SQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARL 465
S+ L L + LNPL+VC P +V +F + + A +L
Sbjct: 517 ASSDDDSDFDVDEDEVETYHFSETLREALRAAIYSPLNPLRVCTPVIVDQFAKLTHALQL 576
Query: 466 FTV-------------SETFVFNDLLESELSRAF---GGLERLDMFFPFDP 500
F V S +DL S R G L+ +FP+DP
Sbjct: 577 FYVYPKLEENRHVRVTSHWRSISDLDISNPDRDLSWVGDNGMLEGYFPYDP 627
>gi|302916639|ref|XP_003052130.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256733069|gb|EEU46417.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 684
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 113/522 (21%), Positives = 205/522 (39%), Gaps = 89/522 (17%)
Query: 65 LETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDS 124
L+ + AL+G + + L+ +I S D D + + +L ++ G Y+
Sbjct: 128 LQVYVMALTGCIPILKDKACNGLVKTILKCSWLGRDDDFVKVFTHFLAALVSAQGSYLSP 187
Query: 125 CLTMLVSNFT---PPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIV 181
L M+V F+ P + + E + + R+H L+ + + P A L ++
Sbjct: 188 VLAMMVGKFSDSRPSVWSVPDFPE----VSRETMRDRLHGTLQYLLQMFPSAVPVLENLL 243
Query: 182 VQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDI 241
P + +++ + Y++N L+++ L+R +L +++R++ +D ++ D
Sbjct: 244 GSNFPF---PDQSMRVHMAYVDNLLRIKKYV--PLLRDEVLDLILNRVVKIDSQMQVDLE 298
Query: 242 LHDDFSKGIFEMELEDVEEAADDAEQVGDELPSG-------------SLSRKSLSGNL-- 286
DD L D AD E GD++ + +S+ G++
Sbjct: 299 DLDDDVTAAVMYALGD-HSRADKWEDDGDDVSDTESVDSDDPDFDQDAARIQSIKGSVEK 357
Query: 287 IAELLDSL----------------------MVLTFEHLESCEGTGRLIEFVMFYACALDP 324
+ +LD+L ++ F+H+ R +F++F+ +
Sbjct: 358 MDAVLDTLFRVYTPHFTNPGSDTAFDAFTVLLREFDHMVLPTYKSRHTQFLIFHFAQMHE 417
Query: 325 ENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVS----LLKRLVD 380
++A F S P + + +A +YLASF++R L I + LL L
Sbjct: 418 RLTDAFCGQLIATAFQSNT-PNVLKQAAAAYLASFVARGSHLPGSLIRNIFGLLLHHLDT 476
Query: 381 WCLEYCNILGGDINPKAHRVFYSGCQAIMYVLCFRMRS-IMDIPR----------LKSQL 429
+ +Y + G + H +YS QA +Y+ CFR + I+ P + ++
Sbjct: 477 YRKKYEPLCRGPDLKRFH-PYYSLVQATLYIFCFRWQDLIVSTPEFVDRDDPASYIGQEM 535
Query: 430 LLMP-----LETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFND--LLESEL 482
M L + LNPLKVC P +V EF + + V N L L
Sbjct: 536 EWMGTCRKDLSIQIFGKLNPLKVCAPVIVEEFAKIAHRLNFMYVYPLVEGNKRVRLTQYL 595
Query: 483 SRAF--GGLER-------------LDMFFPFDPCLLKKSDRF 509
S + GG R LD +FPFDP L S R+
Sbjct: 596 SATYSTGGALRDAGYEMQDESYHQLDPYFPFDPYQLPVSKRW 637
>gi|336265567|ref|XP_003347554.1| hypothetical protein SMAC_04861 [Sordaria macrospora k-hell]
Length = 719
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 129/572 (22%), Positives = 223/572 (38%), Gaps = 110/572 (19%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGR--------LDPDNRALLETSLKALSGAVSYID 80
V++AL GD+++Y+ L + S + D L+ + AL+ V +D
Sbjct: 83 VKQALEGHARGDDEDYDGLKEIFCPSPKRTIVEEEDADTPQPQDLQVYVVALTSHVPLLD 142
Query: 81 ISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTP----- 135
S L+ ++ + + D A L+ +L+A + L+M+V FT
Sbjct: 143 RSC-SGLIRAVLSCTWLDRDDVFARAYIQLLAALSAKVS-FRQQVLSMMVEKFTETRSST 200
Query: 136 ----PSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNK 191
P + P E K + R+H LK + +L A +L IV P H +
Sbjct: 201 VEVVPGF------PPVDSETKKE---RLHLGLKYLLELYADARPMILDIVTHNFP--HTE 249
Query: 192 HERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIF 251
+ + + Y+++ L+L++ +L R + + ++ RL+ LD+E+ D DD +
Sbjct: 250 ESKTRHME-YIDHLLRLKADK-PDLERDIMEL-ILSRLVKLDVEMTLDLENDDDETTRAV 306
Query: 252 EMELEDVEEAADDAEQ---------VGDELPSGSLSRKSLSGNLIAELLDSLMVLTF--- 299
+LE +DD + DE S +R+ L E +D+++ L F
Sbjct: 307 LRQLEASNAKSDDEDDDAMSEADSDDEDEEESDEQTRRILLLKSKLETMDAILDLMFSIY 366
Query: 300 ----------EHLESCEG-------------TGRLIEFVMFYACALDPENCGLRFATMLA 336
E L + E R ++++F A+ F L
Sbjct: 367 DPVFADPDSPEALATFEDLLTDFVNVILPHLKSRHTQYLLF-KFAMKSNRLMEMFIGTLF 425
Query: 337 DVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPK 396
++ P+ + +AV+YLASF +R + + + + +D+ Y N P
Sbjct: 426 NIAFQSTRAPVVKQAAVAYLASFTARGARVQSDQVQLIAQTFLDYIDHYRNTHTSCRGPD 485
Query: 397 AHRV--FYSGCQAIMYVLCFRMRSIMD--------------------IPRLKSQLLLMPL 434
R +Y+ Q ++Y+ CFR R ++D +P +K L L
Sbjct: 486 IRRYSQYYAYFQGLLYIFCFRWRDLIDRDEIPATFDWDDPASFLGQDLPWMKG--LRQRL 543
Query: 435 ETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLE-SEL---SRAFGGLE 490
+ + LNPLK C P +V EF + S RL + N + S+ S A GG
Sbjct: 544 QVNIASKLNPLKCCSPIIVDEFARLSHHLRLIYIYPQIEKNKTIHLSQFFTSSYATGGAL 603
Query: 491 RLDMF-------------FPFDPCLLKKSDRF 509
R F FPFDP L + R+
Sbjct: 604 RDSGFEFDHENWTHIEACFPFDPFQLPVAKRW 635
>gi|400601108|gb|EJP68751.1| RNA polymerase I specific transcription initiation factor RRN3
[Beauveria bassiana ARSEF 2860]
Length = 684
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 118/579 (20%), Positives = 225/579 (38%), Gaps = 110/579 (18%)
Query: 24 ELVYHVREALTSVQSGDNDNYNQLVAVM------HLSGRLDPDNRAL----LETSLKALS 73
E+ VR AL G + Y+ L + +L + D+ L L+ + AL+
Sbjct: 77 EVKLEVRNALEGHLHGSDGQYDTLKDMFANDKQRYLPPVVGEDDDTLKPHELQVYVMALT 136
Query: 74 GAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNF 133
V + L+ I S D + + + +L ++ G Y+ + L+M+V F
Sbjct: 137 SCVPILKNRDCNGLVRVILQCSWLGRDDAFVKSFTHFLAALVSAQGSYIGAVLSMIVDKF 196
Query: 134 T---PPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHN 190
S+ + E + + + R+H+ L+ + + P A L ++ + P
Sbjct: 197 QLTRQSSWCVPDFPEVN----RETMRQRLHSTLQYLLQMFPSAVGVLESLLSAKFPF--- 249
Query: 191 KHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEI-------------- 236
+ +++ + Y+ N LK++ ++ +L +++R++ +D ++
Sbjct: 250 PDDSVQIHMAYINNLLKVKEYVPS--LQDEILDIILNRVVKIDSQMQLDLEDIDDDITTA 307
Query: 237 -------------GWDDILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLS 283
W+ DD + E D ++ A + V + + +L
Sbjct: 308 VLFALRENSHTTSDWEQDELDDSDNESVDSEDLDFDKEATRIKTVKENVEKMDAVLDTLF 367
Query: 284 GNLIAELLD----------SLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFAT 333
L+ ++++ F+H+ R +F++F+
Sbjct: 368 QYYTPYFLNPGSDKAFDAFTIILREFDHMVLPTYKSRHTQFLIFHFAQQHQRLTDAFCGQ 427
Query: 334 MLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVS-----LLKRLVDWCLEYCNI 388
++A F S P + + +A +YLASF++R L PC +V LL+ L + +Y I
Sbjct: 428 LIATAFQSNT-PNVLKQAAAAYLASFVARGA-LVPCSLVRTIFSLLLQYLEQYRRKYEPI 485
Query: 389 LGGDINPKAHRVFYSGCQAIMYVLCFRMRSIM------------------DIPRLKSQLL 430
G + H +YS QA +Y+ CFR + ++ D+ + S
Sbjct: 486 CRGPDLKRFH-PYYSLVQATLYIFCFRWQDLVVGAPDTVDVDDAASYIGQDLEWIGSSRK 544
Query: 431 LMPLETVLKHDLNPLKVCLPSVVSEF---------------LQQSKAARLFT-VSETFVF 474
+ ++ K LNPLKVC P +V EF ++ +K RL +S T+
Sbjct: 545 DLSIQIFGK--LNPLKVCAPVIVEEFAKLAHRLNFMYVYPLVESNKRVRLTQFLSSTYAT 602
Query: 475 NDLLESELSRAFGGLE----RLDMFFPFDPCLLKKSDRF 509
L + G E +LD +FPFDP L S R+
Sbjct: 603 GGALRDA---GYDGQEESFHQLDPYFPFDPYQLPVSKRW 638
>gi|164657718|ref|XP_001729985.1| hypothetical protein MGL_2971 [Malassezia globosa CBS 7966]
gi|159103879|gb|EDP42771.1| hypothetical protein MGL_2971 [Malassezia globosa CBS 7966]
Length = 588
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 23/170 (13%)
Query: 267 QVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPEN 326
QVG L+R+ + L ++ TF+ R ++F+MF+ +LD E
Sbjct: 147 QVGTPRSQNMLTRRYQLYQTLLGLFTRTILTTFK--------SRHVQFIMFWFASLDHEF 198
Query: 327 CGLRFATML---------ADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPC---FIVSL 374
+ T+L A +G + R++A SY+AS+++RAR++ +V
Sbjct: 199 ADMFLGTLLSKSLYAVPTAGTSETGESATILRIAAASYVASYVARARYIDASTTRMVVLN 258
Query: 375 LKRLVDWCLEYCNILGGDINP---KAHRVFYSGCQAIMYVLCFRMRSIMD 421
L +D CLE G P + H VFY+ QA+ YV CFR R + D
Sbjct: 259 LCTFMDACLEAFAAQGATAPPPGAREHAVFYAVTQAVFYVFCFRWRDLRD 308
>gi|297824467|ref|XP_002880116.1| hypothetical protein ARALYDRAFT_903869 [Arabidopsis lyrata subsp.
lyrata]
gi|297325955|gb|EFH56375.1| hypothetical protein ARALYDRAFT_903869 [Arabidopsis lyrata subsp.
lyrata]
Length = 182
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 51/87 (58%), Gaps = 11/87 (12%)
Query: 437 VLKHDLNPLKVCLPSVVS----EFLQQSK-----AARLFTVSETFVFNDLLESELSRAFG 487
+L ++NP LP V F+ Q+K A LF V E F+F+ ESE+SRAFG
Sbjct: 58 MLPSEINPRCSSLPIVAYTIGVSFISQTKPVDGKAGGLFIVLEAFIFD--AESEVSRAFG 115
Query: 488 GLERLDMFFPFDPCLLKKSDRFANATL 514
ERLD FFP DPCLLK S+RF TL
Sbjct: 116 SFERLDTFFPLDPCLLKISNRFTFLTL 142
>gi|296088506|emb|CBI37497.3| unnamed protein product [Vitis vinifera]
Length = 64
Score = 68.2 bits (165), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/63 (53%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 334 MLADVFV-SGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGD 392
MLAD FV S P+T S V+YLAS+LS +FL+ F+ ++L+RLV WCLEYC G
Sbjct: 1 MLADFFVCSTFSTPIT--SGVAYLASYLSHGKFLTTSFVDNILERLVVWCLEYCKKFNGG 58
Query: 393 INP 395
INP
Sbjct: 59 INP 61
>gi|331220049|ref|XP_003322700.1| hypothetical protein PGTG_04237 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309301690|gb|EFP78281.1| hypothetical protein PGTG_04237 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 826
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 88/186 (47%), Gaps = 46/186 (24%)
Query: 310 RLIEFVMFYACALDPENCGLRFA-TMLADVFVSGLY-------PPLTRMSAVSYLASFLS 361
R ++F+MF+ +L+P FA ++LA + GLY P TR++AVSY+AS +S
Sbjct: 508 RHVQFIMFWYASLEPA-----FADSLLATLVERGLYDTDDNSLPVATRVAAVSYIASLIS 562
Query: 362 RARFLSPCF---IVSLLKRLVDWC--LEYCNILGGDINPKAHRVFYSGCQAIMYVLCFRM 416
RA+++ +VSLL C LE +N H V+Y+ QAI Y+ CFR
Sbjct: 563 RAKYIDKHVTRHVVSLL------CARLELGLAEAHQMNVNQHVVWYAIAQAIFYIFCFRW 616
Query: 417 RSIM--------------------DIPRLKSQLL--LMPLETVLKHDLNPLKVCLPSVVS 454
+ ++ + + L L LE + LNPL+ C +VVS
Sbjct: 617 KDLLVEDDDDDEQDEANELNIRFSHPKKFNDRWLSGLKILERAIISPLNPLRTCADTVVS 676
Query: 455 EFLQQS 460
+F + S
Sbjct: 677 QFAKIS 682
>gi|33585914|gb|AAH55781.1| Rrn3 protein, partial [Mus musculus]
Length = 214
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 9/121 (7%)
Query: 398 HRVFYSGCQAIMYVLCFRMRSIM--DIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSE 455
H FYS CQA+ Y + FR + ++ ++ + L + E ++ LNPLK+CLP VV+
Sbjct: 9 HGPFYSACQAVFYTVVFRHKQLLSGNLKQGLQYLQSLNFERIVLSQLNPLKICLPQVVNF 68
Query: 456 FLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER-------LDMFFPFDPCLLKKSDR 508
F + +L N + R+ G + LD FFPFDPC+LK+S +
Sbjct: 69 FAAITNKYQLVFCYTIMERNSRQMLPVIRSTAGGDSVQTCTNPLDTFFPFDPCVLKRSKK 128
Query: 509 F 509
F
Sbjct: 129 F 129
>gi|147852434|emb|CAN78522.1| hypothetical protein VITISV_023431 [Vitis vinifera]
Length = 486
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 55/99 (55%), Gaps = 14/99 (14%)
Query: 123 DSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVV 182
D C ++ +++TP +P GL R+ QVLSRVH+ LK I DLVPLAP+RL+PIV+
Sbjct: 56 DGCFHVVSNSYTPE-------IDPRGLAREDQVLSRVHSTLKDITDLVPLAPSRLVPIVI 108
Query: 183 QRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTL 221
Q+ P R + Y+ N L+ +G + L
Sbjct: 109 QKKP-------RCRRGYSYVVNGLEDVHEQIGAFFSTAL 140
>gi|385305939|gb|EIF49881.1| rrn3p [Dekkera bruxellensis AWRI1499]
Length = 217
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 91/202 (45%), Gaps = 27/202 (13%)
Query: 331 FATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCN--- 387
F ML DV + R+ A+ Y+ SF++RA+ L+ +++++K L+ WC EY
Sbjct: 12 FLVMLLDVVFNSNEIASNRIKAMQYVCSFMARAKSLTRGQLLTVMKYLMSWCNEYVTERE 71
Query: 388 --ILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP--LETVLKHDLN 443
+ G + + Y Q +MY+ CFR R + + L + ++ N
Sbjct: 72 KEVGTGKGGMERFAMLYCVLQGLMYIFCFRFRDLKKEDNDEEWELRLDKFFNKMIMSRFN 131
Query: 444 PLKVCLPSVVSEF---------------LQQSKAARLFTVSETFVFNDLLESELSRAFGG 488
PLK C +VV F + ++K RL + + + ES L+R
Sbjct: 132 PLKFCNETVVLIFARIVQKVDMCYCFSIIDKNKRERLNGIRDATANS---ESSLNRFERK 188
Query: 489 LERLDM--FFPFDPCLLKKSDR 508
E LD+ +FPFDP +LK S +
Sbjct: 189 QEFLDLEAYFPFDPLMLKDSKK 210
>gi|345566690|gb|EGX49632.1| hypothetical protein AOL_s00078g121 [Arthrobotrys oligospora ATCC
24927]
Length = 667
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 112/244 (45%), Gaps = 32/244 (13%)
Query: 286 LIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYP 345
L+ D++++ TF+ + I+FV+F+A P + F ML + + P
Sbjct: 370 LLLHFFDTIILTTFK--------SQYIQFVVFWAAQKSPVFMDI-FLGMLVERAMDPTKP 420
Query: 346 PLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCN---ILGGDINPKAHRVFY 402
+ R +A +Y+ASF++RA+ L + S+++ L W +Y + N + FY
Sbjct: 421 QVARQAAAAYVASFVARAKLLERDAVRSVVRMLCLWLEKYLKDREVECTSPNVRKFGGFY 480
Query: 403 SGCQAIMYVLCFRMR--------------SIMDIPRLKSQLL--LMPLETVLKHDLNPLK 446
+ QA+MY+ CFR R SI DI R L ++ +L NPLK
Sbjct: 481 AVFQAVMYIFCFRWRDLRGKTPLPVGEDESIEDISRSPQSWAPGLQVIDRLLTSRFNPLK 540
Query: 447 VCLPSVVSEFLQQSKAARLF---TVSETFVFNDLLESELSRA-FGGLERLDMFFPFDPCL 502
VC +VV++F + + +F ++ E +L S S +L+ +FPFDP
Sbjct: 541 VCSQNVVTQFAEVASHFGVFYCYSIIERNKRGNLFSSRGSSTELPEATQLETYFPFDPFK 600
Query: 503 LKKS 506
L S
Sbjct: 601 LSHS 604
>gi|241952110|ref|XP_002418777.1| RNA polymerase I-specific transcription initiation factor, putative
[Candida dubliniensis CD36]
gi|223642116|emb|CAX44082.1| RNA polymerase I-specific transcription initiation factor, putative
[Candida dubliniensis CD36]
Length = 506
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 99/454 (21%), Positives = 189/454 (41%), Gaps = 53/454 (11%)
Query: 69 LKALSGAVSYIDISHHESLLVSIFGMSMWNY-DPDVMDALKGLIISLAASNGKYVDSCLT 127
L L S +D + +L+++I + + DP A +I+L ++ KY+ L
Sbjct: 54 LNGLVSNTSRLDNNACNNLIIAILRYNWLDITDPLFAKAYSRFLITLVSTFPKYLHEVLN 113
Query: 128 MLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPT 187
L FT P + HQ+L++ I +P + L + P
Sbjct: 114 KLTHEFTSP-----------NTSQHHQILAQ-------IITYIPTSINSLPQFFKKNFP- 154
Query: 188 VHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFS 247
H+ + Y++N +K+ + EL + + +++ I LD+E+ + + D+
Sbjct: 155 -HHISSTTTELTNYVQNLVKVLDYS-PEL-QFPIYQLIIEVSIKLDVELQ-NQLDEDEEE 210
Query: 248 KGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEG 307
+ + D+ + S + L+ L +++ L H+
Sbjct: 211 IEDLLDDPDLGLSKLDNIISILLNCTSPHFTIDQLNSGQGITLFNTITSLFKSHILPTHF 270
Query: 308 TGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLS 367
T + I+F++F+ PE F +L DV + R+ ++ YL+S+++RA+ LS
Sbjct: 271 T-KSIQFILFHITQYQPE-LADSFLVLLIDVAFNPAETLEIRLKSIQYLSSYIARAKNLS 328
Query: 368 PCFIVSLLKRLVDWCLEYC------NILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMD 421
I ++ LV W ++ LGG + ++FYS QA++Y+ CFR ++
Sbjct: 329 SHQITFIVSYLVGWLNKFIIEREQEVHLGGM---ERFKLFYSTFQALLYIFCFRHELLIT 385
Query: 422 IPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARL-----FTVSETFVFND 476
++ + T NPLK C +VV F + A RL +++ E
Sbjct: 386 STTTTTKFFQRAILT----KFNPLKFCDETVVHIFAK--LATRLNVCYCYSIIEHNKRER 439
Query: 477 LLESE-LSRAFGGLER------LDMFFPFDPCLL 503
+L++ L A ++ L+ +FPFDP +L
Sbjct: 440 MLQTTGLPSAVANFKQKQEFLDLEAYFPFDPLVL 473
>gi|389746738|gb|EIM87917.1| RNA polymerase I-specific transcription initiation factor RRN3
[Stereum hirsutum FP-91666 SS1]
Length = 875
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 97/200 (48%), Gaps = 34/200 (17%)
Query: 290 LLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTR 349
+ D ++LTF+ R +F++FY +LDPE ++ S P +TR
Sbjct: 472 IFDRTILLTFK--------SRYTQFLLFYLTSLDPEFADTFTGELVHKALFSPELPVVTR 523
Query: 350 MSAVSYLASFLSRARFLSPCF---IVSLLKRLVDWCLEYCNIL--GGDINPKA---HRVF 401
++ SY+ASF+SRARF+ + +V L+ R + +E ++ G ++ + VF
Sbjct: 524 AASASYVASFVSRARFVGRGWTREVVGLMGRWLRGQVEGHEMMMVGLEVGVQGLAPLNVF 583
Query: 402 YSGCQAIMYVLCFRMRSIM----------------DIPRLKSQLL--LMPLETVLKHDLN 443
Y+ QA++ + CFR R ++ + P + + L ++ ++ LN
Sbjct: 584 YAVAQALLLIFCFRWRDLLEEEEEDGENGDADVDAEGPSGGRKWMEELGIVQRMVTCSLN 643
Query: 444 PLKVCLPSVVSEFLQQSKAA 463
PLK C +VV +F + ++AA
Sbjct: 644 PLKFCSENVVIQFARVAQAA 663
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 112/266 (42%), Gaps = 46/266 (17%)
Query: 22 DLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRAL--LETSLKALSGAVSYI 79
D+ L + V AL G+ + +++LV +L R AL L L+AL VS +
Sbjct: 94 DMHLAF-VNNALQQKAMGNTETFDELVDQFNLDNRTPDAPSALPALRIWLQALMHVVSRL 152
Query: 80 DISHHE--SLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFT--- 134
+ H +V + M+M N + G++IS + +Y+ L + FT
Sbjct: 153 ERCHTPLVEAIVRLPWMTMENSFVKCYTSFIGILIS---ARPEYLSLVLGKVAQGFTYQS 209
Query: 135 --------PPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMP 186
PP L + V R+H L+ + LVP P+ L P++V+ P
Sbjct: 210 GLQALNVSPPESSSAPLT-------RRTVYDRIHTLLQHLLSLVPTLPSTLQPLLVRHFP 262
Query: 187 TVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDF 246
+K + V Y+ N L++ + EL L+ +VDR I +D+EI
Sbjct: 263 ---HKRQNQAAQVTYIRNMLRV-TEYCPELA-DRLMETIVDRAIQIDVEI---------- 307
Query: 247 SKGIFEMELEDVEEAADDAEQVGDEL 272
++E+E++E A Q D+L
Sbjct: 308 -----QVEIEELEAEASARSQAQDQL 328
>gi|150863721|ref|XP_001382286.2| hypothetical protein PICST_75818 [Scheffersomyces stipitis CBS
6054]
gi|149384977|gb|ABN64257.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 613
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 122/267 (45%), Gaps = 35/267 (13%)
Query: 274 SGSLSRKSLS-GNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFA 332
+GS S + L+ GN +A L +++ L H+ T + I+FV+F+ PE F
Sbjct: 301 AGSFSDEELNNGNGVA-LFNTINSLFRSHILPTHFT-KSIQFVIFHISQYQPE-LADSFL 357
Query: 333 TMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEY-----CN 387
+L DV + R+ A+ YL+S+++RA+ LS +V ++ L+ W +Y C
Sbjct: 358 VLLIDVAFNPNEILEKRLKAMQYLSSYIARAKNLSRHQVVFIVSYLIGWLNKYIIERECE 417
Query: 388 ILGGDINPKAH-------------RVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPL 434
I + A ++FY+ QA++Y+ CFR + + L +
Sbjct: 418 IADFESRNGARSNDGKSAGGMERFKLFYAAFQALLYIFCFRHQMLSSSDSEWECDLDKFI 477
Query: 435 ETVLKHDLNPLKVCLPSVVSEFLQQSKAARL---FTVSETFVFNDLLESE----LSRAFG 487
+ V+ NPLK C +VV F + + + +++ E +L++ + A G
Sbjct: 478 QRVILAKFNPLKYCDETVVYIFAKIATKLNVCYCYSIIEHNKRERMLQTNGQAIMPSAVG 537
Query: 488 GLER------LDMFFPFDPCLLKKSDR 508
++ L+ +FPFDP +L S +
Sbjct: 538 NFKQKQEFLDLEAYFPFDPLVLPSSKK 564
>gi|307103784|gb|EFN52041.1| hypothetical protein CHLNCDRAFT_54625 [Chlorella variabilis]
Length = 925
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 80/219 (36%), Gaps = 77/219 (35%)
Query: 287 IAELLDSLMVLTFEHLESCEGTGRL-----------------------IEFVMFYACALD 323
A+ LDS+M LTF HL + + G+L +F++FYAC
Sbjct: 353 TADKLDSMMELTFAHLAARQAAGQLPGAWATLLGAFERCVLLTHRSKFTQFLLFYACRQA 412
Query: 324 PENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFL----------------------- 360
PE C F +L PP+ R + +Y ASFL
Sbjct: 413 PEPCCRAFLHLLISRLTDKQQPPIARSACAAYAASFLARRAPGGGRGRASLGPGRRGSGA 472
Query: 361 -----------SRARFLSPC---FIVSLLKRLVDWCLEYCN--ILGGDINPKA------- 397
AR + C +V L+R+ DWCL Y G + P
Sbjct: 473 RASQLAHLPPRGEARQAAYCPEGLVVESLQRIADWCLRYARDEDRRGGLPPIPSSSSIAM 532
Query: 398 --------HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQ 428
H F++ CQA++YVLC+ M ++ PR +
Sbjct: 533 ISSDAKVRHGAFHAACQALLYVLCYHMEPLLRPPRARQH 571
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 82/196 (41%), Gaps = 7/196 (3%)
Query: 69 LKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTM 128
L+ L VS + HE LL + +W + L + + +NG V SCL
Sbjct: 70 LRVLGACVSLVHERRHELLLKELLDTPLWQVPQALRLELLDWVAHVVVANGALVQSCLQT 129
Query: 129 LVSNFTPPSYFLDKL----KEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQR 184
LV + PP ++ LE + + V A + + LVP A +RLLP+VV
Sbjct: 130 LVYSLLPPPGPPLPDPHPGEQWQPLEGQALIQDEVLGATEKVLVLVPTAGSRLLPLVVAN 189
Query: 185 MPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHD 244
P H +R +Y+ L G +R LL V++ LI +D+EI W +
Sbjct: 190 FP--HKLRDR-NTQCLYLRAVYGLAEGRAGGGIREGLLSGVLEHLISIDVEIRWAGGVEG 246
Query: 245 DFSKGIFEMELEDVEE 260
+ + + + V E
Sbjct: 247 CGAGAVGRWQWQTVAE 262
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 428 QLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKA------ARLFTVSETFVFNDLLESE 481
QL P+ +L+H L+PL C SVV+EF +Q++ A++ E +
Sbjct: 643 QLFSGPMPKLLQHGLDPLSSCARSVVAEFGRQARVQGFDELAKIVREWERRHAGGGGGAH 702
Query: 482 LSRAFGGLERLDMFFPFDPCLLKKS 506
+ +L++FFPFDP LL++S
Sbjct: 703 AHKPP--HRQLELFFPFDPYLLRRS 725
>gi|336465513|gb|EGO53753.1| hypothetical protein NEUTE1DRAFT_134053 [Neurospora tetrasperma
FGSC 2508]
gi|350295189|gb|EGZ76166.1| RNA polymerase I specific transcription initiation factor RRN3
[Neurospora tetrasperma FGSC 2509]
Length = 716
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 105/262 (40%), Gaps = 51/262 (19%)
Query: 289 ELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLT 348
+LL + + HL+S R ++++F A+ F L ++ P+
Sbjct: 384 DLLTDFVNVILPHLKS-----RHTQYLLF-KFAMKSNRLMEMFIGTLFNIAFQSTRAPVV 437
Query: 349 RMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKAHRV--FYSGCQ 406
+ +AV+YLASF +R + + + + +D+ Y N P R +Y+ Q
Sbjct: 438 KQAAVAYLASFTARGARVQSDQVQLIAQTFLDYIDHYRNTHTSCRGPDIRRYGQYYAYFQ 497
Query: 407 AIMYVLCFRMRSIMD--------------------IPRLKSQLLLMPLETVLKHDLNPLK 446
++Y+ CFR R ++D +P +K L L+ + LNPLK
Sbjct: 498 GLLYIFCFRWRDLIDRDEVPASFDWDDPASFLGQDLPWMKG--LRQRLQVNIASKLNPLK 555
Query: 447 VCLPSVVSEFLQQSKAARLFTV------SETFVFNDLLESELSRAFGGLERLDMF----- 495
C P +V EF + S RL + ++T + S S A GG R F
Sbjct: 556 CCSPIIVDEFARLSHHLRLIYIYPQIEKNKTIHLSQFFTS--SYATGGALRDSGFEFDHE 613
Query: 496 --------FPFDPCLLKKSDRF 509
FPFDP L + R+
Sbjct: 614 NWTHIEACFPFDPFQLPVAKRW 635
>gi|85114369|ref|XP_964682.1| hypothetical protein NCU09247 [Neurospora crassa OR74A]
gi|28926473|gb|EAA35446.1| predicted protein [Neurospora crassa OR74A]
gi|38566998|emb|CAE76298.1| related to RNA Polymerase I Transcription Factor Rrn3 [Neurospora
crassa]
Length = 716
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 105/262 (40%), Gaps = 51/262 (19%)
Query: 289 ELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLT 348
+LL + + HL+S R ++++F A+ F L ++ P+
Sbjct: 384 DLLTDFVNVILPHLKS-----RHTQYLLF-KFAMKSNRLMEMFIGTLFNIAFQSTRAPVV 437
Query: 349 RMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKAHRV--FYSGCQ 406
+ +AV+YLASF +R + + + + +D+ Y N P R +Y+ Q
Sbjct: 438 KQAAVAYLASFTARGARVQSDQVQLIAQTFLDYIDHYRNTHTSCRGPDIRRYGQYYAYFQ 497
Query: 407 AIMYVLCFRMRSIMD--------------------IPRLKSQLLLMPLETVLKHDLNPLK 446
++Y+ CFR R ++D +P +K L L+ + LNPLK
Sbjct: 498 GLLYIFCFRWRDLIDRDEVPASFDWDDPASFLGQDLPWMKG--LRQRLQVNIASKLNPLK 555
Query: 447 VCLPSVVSEFLQQSKAARLFTV------SETFVFNDLLESELSRAFGGLERLDMF----- 495
C P +V EF + S RL + ++T + S S A GG R F
Sbjct: 556 CCSPIIVDEFARLSHHLRLIYIYPQIEKNKTIHLSQFFTS--SYATGGALRDSGFEFDHE 613
Query: 496 --------FPFDPCLLKKSDRF 509
FPFDP L + R+
Sbjct: 614 NWTHIEACFPFDPFQLPVAKRW 635
>gi|294654334|ref|XP_456384.2| DEHA2A01034p [Debaryomyces hansenii CBS767]
gi|199428799|emb|CAG84331.2| DEHA2A01034p [Debaryomyces hansenii CBS767]
Length = 657
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 97/241 (40%), Gaps = 56/241 (23%)
Query: 310 RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPC 369
+ I+F +F+ PE F +L DV + R+ A+ YL+S+++RA+ LS
Sbjct: 374 KSIQFTLFHISQYQPE-LADSFLVLLIDVAFNTTEILEKRLKAMQYLSSYIARAKNLSRH 432
Query: 370 FIVSLLKRLVDWCLEY-----CNILGGDINPKAH-------------RVFYSGCQAIMYV 411
IV ++ L+ W +Y C I D + K ++FY+ QA++Y+
Sbjct: 433 QIVFVVSYLIGWLNKYVIERECEITDYDNDNKGRSTNNKQGGGMERFKLFYAAFQALLYI 492
Query: 412 LCFRMRSIMDIPRLKSQL--------LLMPLETVLKHDLNPLKVCLPSVVSEF------- 456
CFR + + L + V+ NPLK C +VV F
Sbjct: 493 FCFRYKVLYKTQGSTESSSDSEWECDLDKFFQRVIIAKFNPLKFCDETVVYIFAKIATKL 552
Query: 457 --------LQQSKAARLFTVSETFVFNDLLESELSRAFGGLER------LDMFFPFDPCL 502
++ +K R+ + T L A G ++ L+ +FPFDP +
Sbjct: 553 NVCYCYSIIEHNKRERMLQTNGT--------KNLPSAVGNFKQKQEFLDLEAYFPFDPLV 604
Query: 503 L 503
L
Sbjct: 605 L 605
>gi|322695998|gb|EFY87797.1| RNA polymerase I specific transcription initiation factor RRN3
superfamily [Metarhizium acridum CQMa 102]
Length = 688
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 120/589 (20%), Positives = 231/589 (39%), Gaps = 108/589 (18%)
Query: 12 SHEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVM------HLSGRLDPDNRAL- 64
++E+ + D++L VR AL G+ Y+ L + +L + D+ L
Sbjct: 68 TYEVGRRTMDDVKL--EVRAALEDHLRGNGGQYDMLKELFANDRQRYLPPVVGEDDDTLK 125
Query: 65 ---LETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKY 121
L+ + AL+ + + L+ +I S D + +L ++ G Y
Sbjct: 126 PYELQVYVMALTSCIPILKGKECSGLVRTILQCSWLGRDAAFAKVFTHFLAALVSAQGSY 185
Query: 122 VDSCLTMLVSNFT---PPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLL 178
+ L+M+V F P ++ + E + + R+H++++ I + P A L
Sbjct: 186 LVPVLSMMVEKFRDSRPSAWSVPDFPEVSRVIMR----DRLHSSIEYILQMFPSAVAVLE 241
Query: 179 PIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEI-- 236
++ + P E +++ + Y+ N L+++ G ++ +L +++R++ +D ++
Sbjct: 242 NLLSSKFPF---PDESVRVHMAYIHNLLQVKKYVPG--LQDEILDLILNRVVKIDSQMQV 296
Query: 237 -------------------------GWDDILHDDFSKGIFEMELEDVEEAADDAEQVGDE 271
W+D DD + E D ++ A + V D
Sbjct: 297 DLEDLDDDVTAAVMYALRENQRQPSAWEDDDSDDSDNESIDSEDLDYDQEAARIKAVKDS 356
Query: 272 LPSGSLSRKSL----------SGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACA 321
+ +L G+ A + + ++ F H+ R +F++F+
Sbjct: 357 VEKMDAVLDTLFTVYSPHFVNPGSDNAFDMFTTILREFHHMVLPTYKSRHTQFLIFHFAQ 416
Query: 322 LDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVS----LLKR 377
++A F S P + + +A +YLASF++R + P + + LL
Sbjct: 417 RHERLIDAFCGQLMATAFQSNT-PNVLKQAAAAYLASFVARGAHVPPSLVRTMFTLLLHH 475
Query: 378 LVDWCLEYCNILGGDINPKAHRVFYSGCQAIMYVLCFRMR-------SIMDIPRLKSQLL 430
L + +Y + G + H +YS QA +Y+ CFR + ++D P + +
Sbjct: 476 LEQYRRKYEPLCRGPDLKRFH-PYYSLVQATLYIFCFRWQDLVVSAPEVVD-PEDPASYI 533
Query: 431 LMPLETV----------LKHDLNPLKVCLPSVVSEF---------------LQQSKAARL 465
LE + + LNPLKVC P +V EF ++ +K RL
Sbjct: 534 GQDLEWIGTSRKDLSVQIFGKLNPLKVCAPVIVDEFAKLAHRLNFVYIYPLVESNKRVRL 593
Query: 466 FT-VSETFVFNDLLESELSRAFGGLE----RLDMFFPFDPCLLKKSDRF 509
+S T+ L + G E +LD +FPFDP L S R+
Sbjct: 594 TQFLSATYSTGGALRDA---GYEGQEESYHQLDPYFPFDPYQLPISKRW 639
>gi|170589770|ref|XP_001899646.1| Hypothetical 75.1 kDa protein C36E8.1 in chromosome III, putative
[Brugia malayi]
gi|158592772|gb|EDP31368.1| Hypothetical 75.1 kDa protein C36E8.1 in chromosome III, putative
[Brugia malayi]
Length = 552
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 104/256 (40%), Gaps = 46/256 (17%)
Query: 270 DELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGL 329
D LPS +K ++ L+V+ EHL G + I F+ FY C+LD
Sbjct: 232 DWLPSTPRQKK---------IIKELLVVFEEHLLMAHGL-KNISFLWFYVCSLD------ 275
Query: 330 RFATMLADVFVSGLYPPLTRMS-----------AVSYLASFLSRARFLSPCFIVSLLKRL 378
T F+ L+ +TR++ A Y++S LSRA +++ + L+ L
Sbjct: 276 ---TSYQKNFLRWLWSFVTRLNQTPNDWKKAQGAACYISSMLSRASYINLSTTMEWLEVL 332
Query: 379 VDWCLEYCN-----ILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP 433
WC Y N H FY+ QA + CFR R I+ + +++
Sbjct: 333 SHWCTTYVNEMVDRTTAATAGSTRHGTFYAVFQAFLVAFCFRYREIVQAKEV-AKIHHWG 391
Query: 434 LETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLD 493
L ++ L PL V F S++ +L V N +L ++ + + +
Sbjct: 392 LGHIIHSTLEPLSYISHPVALCFATISRSVQLVYV------NHILPAKPAE----MMPFE 441
Query: 494 MFFPFDPCLLKKSDRF 509
FPFD LK+S F
Sbjct: 442 SHFPFDSYSLKRSLSF 457
>gi|255713300|ref|XP_002552932.1| KLTH0D04840p [Lachancea thermotolerans]
gi|238934312|emb|CAR22494.1| KLTH0D04840p [Lachancea thermotolerans CBS 6340]
Length = 612
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 118/522 (22%), Positives = 200/522 (38%), Gaps = 96/522 (18%)
Query: 56 RLDPDNRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPD-VMDALKGLIISL 114
R+ P N ++L L+ LS +S +D SL+ S+ W P + I L
Sbjct: 87 RISPGNLSIL---LQTLSYNISKLDTPLCTSLIQSVINFEKWWELPTATLGTYIFFIKIL 143
Query: 115 AASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAP 174
+S K+ L+S FT P +D+ + H + LK +P
Sbjct: 144 CSSLPKWWQDVSLPLISEFTLP---VDQTVQHHEM-------------LKYFLRTIPTCT 187
Query: 175 TRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDM 234
+ + + P NK++ + +V Y+ N L L + EL R V++++I +D+
Sbjct: 188 GFIDSYIAKFFP---NKNDSKRNLVNYIANVLLL-TDYCNEL-RFQSWSLVIEKVISIDV 242
Query: 235 EIGWDDILHDDFSKGIFEMELEDVEEAAD------------------------------- 263
E+ + DD + + EL+D E +D
Sbjct: 243 ELQNELDELDDDLENNIDDELDDGEVESDEDDQNLDNDSDDDSANDLDDDDLMDGQEEYN 302
Query: 264 -DAEQVGDELPSG-----SLSRKSLSGNLIAE---------LLDSLMVLTFEHLESCEGT 308
D Q +L S SL K LS +L A+ + ++L+ L H+ T
Sbjct: 303 VDVTQNIKQLSSKLDAILSLITKRLSQSLTAQSIENGDGVSIFNTLISLFKSHILPTYYT 362
Query: 309 GRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSP 368
R I++++F+ E F L D+ S R+ ++ Y+ SF++RA+ L+
Sbjct: 363 -RSIQYILFHVSQQQLELMDA-FLVTLIDIAFSPNETIEKRIKSLQYIGSFIARAKKLTN 420
Query: 369 CFIVSLLKRLVDWCLEYCNILGGDINP----KAHRVFYSGCQAIMYVLCFRMRSIMDIPR 424
I+ + L W Y ++N + + FY+ QA+ YV CFR D
Sbjct: 421 TQIIFVSSYLTSWLNRYVLEREEEVNQPGGVERFKHFYAAFQALCYVFCFRHAIFRDGDT 480
Query: 425 LKSQLLLMPLETVLKHDLNPLKVCLPSVVSEF---LQQSKAARLFTVSETF---VFNDLL 478
+ ++ VL NPLK C +V+ F Q A F++ E ++
Sbjct: 481 WECEIDKFFQRMVLSK-FNPLKYCNENVMMMFARIAQHEGVAYCFSIIENNNNERMKGIM 539
Query: 479 ESELSRAFGGLER------------LDMFFPFDPCLLKKSDR 508
S+ + G+ L +FP+DP LK R
Sbjct: 540 GKSDSQGYNGVVSNWSLATRQQFIDLQSYFPYDPLFLKTYKR 581
>gi|388851988|emb|CCF54344.1| related to RRN3-RNA polymerase I specific transcription factor
[Ustilago hordei]
Length = 828
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 102/217 (47%), Gaps = 17/217 (7%)
Query: 29 VREALTSVQSGDNDNYNQL-VAVMHLSGRLDPDNRALLETSLKALSGAVSYIDISHHESL 87
V AL+ + G+ Y +L V S + + L + L ALS VS +D SH + L
Sbjct: 82 VVNALSEKEKGNTGPYYELLVQFAEPSTGRSGASVSSLRSLLAALSHVVSDLDRSHSK-L 140
Query: 88 LVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTP-----PSYFLDK 142
+ SIF + + D + SL ++ +++ LT + P +F D+
Sbjct: 141 VESIFALPWTSMDDSFAQMWIKFVCSLVSARSEWLSVILTKATKALSYRLEWLPYHFADE 200
Query: 143 L-KEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMP--TVHNKHERLKMIV 199
K ++ QV RVH ++S+ +VP P L P++VQ +P VH + +
Sbjct: 201 TGKRSMSTLKRKQVYERVHLLIRSLLSVVPTLPGVLGPLLVQFLPHKMVHRSDQ-----L 255
Query: 200 VYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEI 236
VYM N L + S EL + +L AV+DR I LD+EI
Sbjct: 256 VYMRNILHV-SEYCAELSEA-ILGAVIDRAIQLDVEI 290
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 76/197 (38%), Gaps = 48/197 (24%)
Query: 310 RLIEFVMFYACALDPENCGLRFATMLADVFVSGLY-------PPLTRMSAVSYLASFLSR 362
R ++F++F+ +LDPE +L S P + R +A Y+ASF+SR
Sbjct: 443 RHVQFLLFWFNSLDPEFSDYFLGVLLEKSLYSRRVEYGEKEEPAVIRSAAAGYVASFVSR 502
Query: 363 ARFLSPCFIVSLLKRLVDWCLEYCN------ILGGDINP--KAHRVFYSGCQAIMYVLCF 414
A ++ +L L + + + G P AH VFYS QA Y+ CF
Sbjct: 503 ASYVDGATTRVVLHNLCAYLDAHIDESTRPDTEAGSAAPGSNAHSVFYSVVQAAFYIFCF 562
Query: 415 RMR------------------------------SIMDIPRLKSQLL---LMPLETVLKHD 441
R R S+ + + ++ L L+ +
Sbjct: 563 RWRDLKITNEDADGGVGDLDYQEADEIGGGMHDSVGSLGQFGAEAWCDGLTSLQRAVTCR 622
Query: 442 LNPLKVCLPSVVSEFLQ 458
LNPLK C +VV +F +
Sbjct: 623 LNPLKYCSANVVKQFAR 639
>gi|322709029|gb|EFZ00606.1| RNA polymerase I specific transcription initiation factor RRN3
superfamily [Metarhizium anisopliae ARSEF 23]
Length = 688
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 118/586 (20%), Positives = 228/586 (38%), Gaps = 102/586 (17%)
Query: 12 SHEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVM------HLSGRLDPDNRAL- 64
++E+ + D++L VR AL G+ Y+ L + +L + D+ L
Sbjct: 68 TYEVGRRTMDDVKL--EVRAALEDHLRGNGGQYDMLKELFAKDRQRYLPPVVGEDDDTLK 125
Query: 65 ---LETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKY 121
L+ + AL+ + + L+ +I S D + +L ++ G Y
Sbjct: 126 PYELQVYVMALTSCIPILKGKECSGLVRTILQCSWLGRDAAFAKVFTHFLAALVSAQGSY 185
Query: 122 VDSCLTMLVSNFT---PPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLL 178
+ L+M+V F P ++ + E + + R+H+ ++ I + P A L
Sbjct: 186 LVPVLSMMVEKFRDSRPSAWSVPDFPE----VSRAIMRDRLHSGIEYILQMFPSAVAVLE 241
Query: 179 PIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEI-- 236
++ + P E +++ + Y+ N L+++ ++ +L +++R++ +D ++
Sbjct: 242 NLLSSKFPF---PDESVRVHMAYIHNLLQVKKYVPD--LQDEILDLILNRVVKIDSQMQV 296
Query: 237 -------------------------GWDDILHDDFSKGIFEMELEDVEEAADDAEQVGDE 271
W+D DD + E D ++ A + V D
Sbjct: 297 DLEDLDDDVTAAVMYALRENQRQPSAWEDDDSDDSDNESIDSEDLDYDQEAARIKAVKDS 356
Query: 272 LPSGSLSRKSL----------SGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACA 321
+ +L G+ A + + ++ F+H+ R +F++F+
Sbjct: 357 VEKMDAVLDTLFSVYSPHFVNPGSDNAFDMFTTILREFDHMVLPTYKSRHTQFLIFHFAQ 416
Query: 322 LDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVS----LLKR 377
++A F S P + + +A +YLASF++R + P + + LL
Sbjct: 417 RHERLIDAFCGQLMATAFQSNT-PNVLKQAAAAYLASFVARGAHVPPGLVRTMFTLLLHH 475
Query: 378 LVDWCLEYCNILGGDINPKAHRVFYSGCQAIMYVLCFRMR-------SIMDIPRLKSQLL 430
L + +Y + G + H +YS QA +Y+ CFR + ++D P + +
Sbjct: 476 LEQYRRKYEPLCRGPDLKRFH-PYYSLVQATLYIFCFRWQDLVVSAPEVVD-PEDPASYI 533
Query: 431 LMPLETV----------LKHDLNPLKVCLPSVVSEF---------------LQQSKAARL 465
LE + + LNPLKVC P +V EF ++ +K RL
Sbjct: 534 GQDLEWIGTSRKDLSVQIFGKLNPLKVCAPVIVDEFAKLAHRLNFVYIYPLVESNKRVRL 593
Query: 466 FT-VSETFVFNDLLESELSRAFG-GLERLDMFFPFDPCLLKKSDRF 509
+S T+ L G +LD +FPFDP L S R+
Sbjct: 594 TQFLSATYSTGGALRDAGYEGQGESYHQLDPYFPFDPYQLPISKRW 639
>gi|366987231|ref|XP_003673382.1| hypothetical protein NCAS_0A04370 [Naumovozyma castellii CBS 4309]
gi|342299245|emb|CCC66995.1| hypothetical protein NCAS_0A04370 [Naumovozyma castellii CBS 4309]
Length = 606
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 125/560 (22%), Positives = 214/560 (38%), Gaps = 102/560 (18%)
Query: 28 HVREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRALLETS-----LKALSGAVSYIDIS 82
+++ AL +++ D N + + L R PD +ET L LS ++ ID S
Sbjct: 55 YIKSALENLEKNDPTQINLIADQVGLPAR-SPDR---IETKNLNILLDVLSNNINRIDSS 110
Query: 83 HHESLLVSIFGMSMWNYDPDV-MDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLD 141
+L+ SI W P + + I L +S K+ +LVSNFT LD
Sbjct: 111 RGITLIQSIINFEKWWELPSLTLSKYVFFIKILCSSIPKWWQDVSMILVSNFT-----LD 165
Query: 142 KLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVY 201
+K + H H LK ++P + + + + P NK++ + +V Y
Sbjct: 166 TVKT-----KCH------HDMLKYFLRMIPSSMGFIDAYLAKFFP---NKNDTSEKLVNY 211
Query: 202 MENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIG------------------------ 237
+ N L L + + ++ + +V+++I +D+E+
Sbjct: 212 ISNILLL--TDYCKELKFQVWSLLVEKIISIDVELQNELDELDDEIEEDLEEENEEEEDD 269
Query: 238 --WDDILHDDFSKGIFE---MELEDVEEAADDAEQVGDELPSG-----SLSRKSLSGNLI 287
D+ ++ K E E+E EE D Q EL + +L + ++
Sbjct: 270 EDDDENENELEPKNTIEDQDGEIEGDEEYNVDVTQGIKELSTKLDSILTLITERITSEFT 329
Query: 288 AELLDS---------LMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADV 338
AE L+S L L H+ S T R I+++MF+ E F L D+
Sbjct: 330 AENLESGDGVTLFNILTTLFKTHILSTYYT-RSIQYIMFHVSQQQLELMD-SFLVTLIDI 387
Query: 339 FVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINP--- 395
S ++ ++ YL S+++RA+ LS I+ + L W Y +++
Sbjct: 388 AFSPSESSEKKIKSLQYLGSYIARAKKLSRTQIIFVASYLTSWLNRYVIEREEEVDQPGG 447
Query: 396 -KAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVV- 453
+ + FY+ QA+ Y+ CFR D L + ++ NPLK C +V+
Sbjct: 448 MERFKHFYATFQALCYIFCFRHSIFRDTEGAWECELDKFFQRMIISKFNPLKYCNENVML 507
Query: 454 --SEFLQQSKAARLFTVSETF-----------VFNDLLESELSRAFGGLE--------RL 492
+ Q A F++ E V ND E + G L
Sbjct: 508 MFARITQHEDVAYCFSIIENNNNERLRGIIGKVDNDKKEYNTGGSTSGWSLATRQQFIDL 567
Query: 493 DMFFPFDPCLLKKSDRFANA 512
+FP+DP LK + A
Sbjct: 568 QSYFPYDPLFLKNYKKIMKA 587
>gi|392587027|gb|EIW76362.1| RNA polymerase I-specific transcription initiation factor RRN3
[Coniophora puteana RWD-64-598 SS2]
Length = 886
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 86/205 (41%), Gaps = 57/205 (27%)
Query: 310 RLIEFVMFYACALDPENCGLRFATMLADVFV-SGLY---------------------PPL 347
R +F++F+ +L PE FA + + V LY P +
Sbjct: 499 RYTQFLLFWYTSLSPE-----FADLFQGLLVEKALYGASSGAGAGASGAGAGTGTSVPAV 553
Query: 348 TRMSAVSYLASFLSRARFL---SPCFIVSLLKRLVDWCLEYCNIL---GGDINPKAHR-V 400
TR A SY+ASF+SRA F+ + +L R + LE+ GG++ AH V
Sbjct: 554 TRAVAASYIASFVSRATFVDRDGAREVTGVLCRFLAAHLEWVEATIAAGGEMPGMAHHTV 613
Query: 401 FYSGCQAIMYVLCFRMRSIMDI---------------------PRLKSQLL--LMPLETV 437
FY+ QA+ + CFR R + + R K + L ++
Sbjct: 614 FYAVTQAVFLIFCFRWRDLREDGIEGEGEGESAREEGRRGGTGARWKGSWMPELGIVQRA 673
Query: 438 LKHDLNPLKVCLPSVVSEFLQQSKA 462
+ LNPLKVC P VV +F + ++A
Sbjct: 674 ITSPLNPLKVCSPGVVQQFARVAQA 698
>gi|302309898|ref|XP_449572.2| hypothetical protein [Candida glabrata CBS 138]
gi|196049206|emb|CAG62548.2| unnamed protein product [Candida glabrata]
Length = 612
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 111/276 (40%), Gaps = 53/276 (19%)
Query: 280 KSLSGNL--IAELLDSLMV--LTFEHLESCEGTG-------------------RLIEFVM 316
K LS L I LL S ++ +T E LES EG G R ++++M
Sbjct: 312 KELSNKLDAILSLLSSEIIKDMTPEKLESGEGIGTFNTLTTLFKTHILPTYYTRSVQYIM 371
Query: 317 FYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLK 376
F+ E T++ D+ + R+ ++ YL S+++RA+ LS IV +
Sbjct: 372 FHLSQQQLELMDSYLVTLI-DISFAANETSEKRIKSLQYLGSYIARAKKLSRTQIVFVAS 430
Query: 377 RLVDWCLEYCNILGGDINPKA----HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLM 432
L W Y ++N + FY+ QA+ Y+ CFR + + D+ L
Sbjct: 431 YLTSWLNRYVIEREEEVNQPGGMDRFKHFYAAFQALCYIFCFRHKDLRDVDGSWECELDK 490
Query: 433 PLETVLKHDLNPLKVCLPSVV---SEFLQQSKAARLFTVSETFVFNDLLESELSRA---F 486
++ NPLK C +V+ + Q+ A F++ E N+LL + +A
Sbjct: 491 FFTRMVISKFNPLKYCNENVMLMFARIAQEEDVAYCFSIIEN-NNNELLRGIMGKADSSR 549
Query: 487 GGLER------------------LDMFFPFDPCLLK 504
GG L +FP+DP LK
Sbjct: 550 GGTPTPMGPATSWSLATRQQFIDLQSYFPYDPLFLK 585
>gi|406866180|gb|EKD19220.1| RNA polymerase I specific transcription initiation factor RRN3
superfamily [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 687
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 98/235 (41%), Gaps = 38/235 (16%)
Query: 310 RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPC 369
R +F++F+ A E+ FA L + + R S+ +YLASF++R +
Sbjct: 408 RHTQFLLFH-FAQTAEHLVDSFAGTLIQLAFQPSRAAVQRQSSAAYLASFVARGAHVQAS 466
Query: 370 FIVSLLKRLVDW--CLEYCNIL---GGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPR 424
+ ++ + D + N L G D+ + + FY+ QA++Y+ CFR R ++
Sbjct: 467 VVRTVFDIIGDNLDTIRSHNELTCRGPDL--QRYGTFYAMTQALLYIFCFRWRDLITSSE 524
Query: 425 LKSQL---------------LLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVS 469
+ + + L + LNPLKVC P +V+EF + ++ R V
Sbjct: 525 ISEEEDPVGFVSQDLNWTAGVKETLTRAIYSKLNPLKVCSPPIVAEFAKIARHLRFMYVY 584
Query: 470 ETFVFND---LLESELSRAFGGLE------------RLDMFFPFDPCLLKKSDRF 509
N L + A G L +LD +FPFDP L S R+
Sbjct: 585 PLLETNKRIRLGQYYSGHATGALRDTGNGGNNDSWHQLDAYFPFDPYQLPISKRW 639
>gi|312083431|ref|XP_003143859.1| hypothetical protein LOAG_08279 [Loa loa]
Length = 673
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 93/405 (22%), Positives = 156/405 (38%), Gaps = 75/405 (18%)
Query: 150 ERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLE 209
E + + + L I PLA L+ I+ QR P H+ ++ V Y++N + +
Sbjct: 186 EEQDNIYNLASDGLGFILKCFPLATRSLVKIIRQRFP--HHSVPSIRY-VSYVKNLILIC 242
Query: 210 SSAMGELVRSTLLMAVVDRLIDLDM-----------EIGWDDILHDDFSKGIFEMELEDV 258
+ R + ++D L LD E DD L +E ++ +V
Sbjct: 243 QNI--PQCREDIFCIIIDGLAQLDAVLTKVENSSRKEDSCDDGLSVFLLDEEYERKISEV 300
Query: 259 EEAADDAEQV---------------GDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLE 303
++ D E++ E PS + L ++L L+V+ EHL
Sbjct: 301 QDNNDKVEKLDTCMSIMFDYLGKLCSHENPS-KIGCGWLPSTSKGKILKELLVVFEEHLL 359
Query: 304 SCEGTGRLIEFVMFYACALD---PENCGLRFATMLADVFVSGLYPPLTRMS--------- 351
G + I F+ FY C+LD P++ F+S L+ +TR++
Sbjct: 360 MAHGL-KNISFLWFYVCSLDMSYPKD------------FLSWLWNFVTRLNQTPNDWKKA 406
Query: 352 --AVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCN-----ILGGDINPKAHRVFYSG 404
A Y+ S LSRA ++ + L+ L WC Y N H FY+
Sbjct: 407 QGATCYIGSMLSRASYIDLSTTMEWLEVLSHWCTTYVNEMIDRTTDATAGSTRHGTFYAV 466
Query: 405 CQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAAR 464
QA + CFR R I+ + ++ L ++ L PL V F S++ +
Sbjct: 467 FQAFLVAFCFRYREIVQAKEM-IKIHHWGLGHIVHSTLEPLSYISHPVALCFATISRSMQ 525
Query: 465 LFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
L V N +L ++ + + + FPFD L++S F
Sbjct: 526 LVYV------NHILPAKPAE----MMPFEPHFPFDSYSLERSLSF 560
>gi|365759747|gb|EHN01521.1| Rrn3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 628
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 122/544 (22%), Positives = 199/544 (36%), Gaps = 120/544 (22%)
Query: 54 SGRLDPDNRALLETSLKALSGAVSYIDISHHESLLVSIFGM-SMWNYDPDVMDALKGLII 112
S R+D N +L L LS ++ I+ S L+ +I W P + I
Sbjct: 85 SERIDDKNFNVL---LDILSSNINRIESSRGAFLIQTIINFEKWWELPPQTLSKYIYFIK 141
Query: 113 SLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPL 172
L +S K+ +LVS F P+ Q + H LK ++P
Sbjct: 142 ILCSSIPKWWQDVSMILVSCFILPT---------------EQTVCH-HDMLKYFLRMIPS 185
Query: 173 APTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLES--SAMGELVRSTLLMAVVDRLI 230
+ + + + P NK++ K +V Y N LKL S +G + S L ++++I
Sbjct: 186 SMGFIDTYLAKFFP---NKNDTRKKLVNYTSNLLKLRGYCSELGFQIWSLL----IEKII 238
Query: 231 DLDMEIGWDDILH-------------------------DDFSKGIFEMELEDVEEAADDA 265
+D+E+ + DD + + + E + AA DA
Sbjct: 239 SIDVELQNELDELDDDVDDGDLEDVDLEDDDLTDDQSGDDNDESEEDNDNEQSKSAAADA 298
Query: 266 EQVGD---ELPSGSLSRKSLSGNL---IAEL---LDSLMVL---------TFEHLESCEG 307
Q + E+ G + + L I EL LD+++ L T E LE+ EG
Sbjct: 299 NQSDNDDMEVIEGMDGAEEYNVELTQGIKELSTKLDAILTLVSTHVEEQVTPESLENGEG 358
Query: 308 TG-------------------RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLT 348
G R I+++MF+ E F L D+ +
Sbjct: 359 VGVFNTLTTLFKTHVLPTYYTRSIQYIMFHVSQQQLELMD-SFLVTLIDISFAPNQAAEK 417
Query: 349 RMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA----HRVFYSG 404
++ ++ YL S++ RA+ LS I+ + L W Y +++ + + FY+
Sbjct: 418 KIKSLQYLGSYIGRAKKLSRTQIIFVASYLTSWLNRYVIEREEEVDQRGGMERFKHFYAA 477
Query: 405 CQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVV---SEFLQQSK 461
QA+ Y+ CFR D L + ++ NPLK C +V+ + QQ
Sbjct: 478 FQALCYIFCFRHSIFRDTDGNWECELDKFFQRMVISKFNPLKFCNENVMLMFARIAQQES 537
Query: 462 AARLFTV--------------------SETFVFNDLLESELSRAF-GGLERLDMFFPFDP 500
A F++ ET V + S S A L +FPFDP
Sbjct: 538 VAYCFSIIENNNNERLRGIIGKADSDRRETLVQANTASSSWSLATRQQFIDLQSYFPFDP 597
Query: 501 CLLK 504
LK
Sbjct: 598 LFLK 601
>gi|118369166|ref|XP_001017788.1| hypothetical protein TTHERM_00438910 [Tetrahymena thermophila]
gi|89299555|gb|EAR97543.1| hypothetical protein TTHERM_00438910 [Tetrahymena thermophila
SB210]
Length = 762
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 92/428 (21%), Positives = 180/428 (42%), Gaps = 65/428 (15%)
Query: 121 YVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPI 180
YV S ++ F K+ G + +++ +V L I + PL L I
Sbjct: 134 YVKSVFNLVDEQFQ-------KIGLKQGSPNQKKMMLQVVDLLAKIIKIYPLYQNDLCRI 186
Query: 181 VVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDD 240
+ + P ++ + + +Y+ N L+L + +L+ L++AV +LI++D EI D
Sbjct: 187 LQESYP---HRVQGEQFHKIYLTNILQL-AIKCPQLMPKILIIAV-QKLIEIDSEIKLDH 241
Query: 241 ILHDDFSKG-------------IFEM---ELEDVEEAADDAEQVGDELPSGSLSRKSLSG 284
++ IFE +L+D + ++D +EL S +K S
Sbjct: 242 DAQENEKNSQIMAEKLDWLMLIIFEFIDYQLKD-KVSSDSCFGQKEELKQNSQDKKDKSQ 300
Query: 285 NLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLY 344
+ + + + F + ++F++FY C+L F + V +
Sbjct: 301 --MEDKFFKIFLNVFSEQILITHQSKYVQFIIFYLCSLRN-----SFQNAFLNHLVKNIT 353
Query: 345 P--PL----TRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGG-----DI 393
PL T+++++ YL S+++RA+++ I + + L+ Y +
Sbjct: 354 EKNPLIYKSTQINSIYYLGSYIARAKYIENETIRKIFEYLITHLNRYIQKFDERQKEENY 413
Query: 394 NPKAHRV---FYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLK--HDLNPLKVC 448
N H++ Y QA++Y+LC+R +++++ K LL E + K + N L
Sbjct: 414 NEGLHKIHLNLYHLLQAMLYILCYRFKAVLE---SKENLLQKFYEIMDKACSNFNALFFI 470
Query: 449 LPSVVSEF------LQQSKAARLF-TVSETFVFNDLLESELSRAFGGLERLDMFFPFDPC 501
P + + F + + LF S+T + + + L + + LD +FPFDP
Sbjct: 471 SPHIQNVFSDVCVSYGEDQLVELFEKTSQTSQATESISAALQQR---AQLLDNYFPFDPY 527
Query: 502 LLKKSDRF 509
L+ SD+F
Sbjct: 528 CLQYSDKF 535
>gi|393908885|gb|EFO20210.2| hypothetical protein LOAG_08279 [Loa loa]
Length = 663
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 93/405 (22%), Positives = 156/405 (38%), Gaps = 75/405 (18%)
Query: 150 ERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLE 209
E + + + L I PLA L+ I+ QR P H+ ++ V Y++N + +
Sbjct: 186 EEQDNIYNLASDGLGFILKCFPLATRSLVKIIRQRFP--HHSVPSIRY-VSYVKNLILIC 242
Query: 210 SSAMGELVRSTLLMAVVDRLIDLDM-----------EIGWDDILHDDFSKGIFEMELEDV 258
+ R + ++D L LD E DD L +E ++ +V
Sbjct: 243 QNI--PQCREDIFCIIIDGLAQLDAVLTKVENSSRKEDSCDDGLSVFLLDEEYERKISEV 300
Query: 259 EEAADDAEQV---------------GDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLE 303
++ D E++ E PS + L ++L L+V+ EHL
Sbjct: 301 QDNNDKVEKLDTCMSIMFDYLGKLCSHENPS-KIGCGWLPSTSKGKILKELLVVFEEHLL 359
Query: 304 SCEGTGRLIEFVMFYACALD---PENCGLRFATMLADVFVSGLYPPLTRMS--------- 351
G + I F+ FY C+LD P++ F+S L+ +TR++
Sbjct: 360 MAHGL-KNISFLWFYVCSLDMSYPKD------------FLSWLWNFVTRLNQTPNDWKKA 406
Query: 352 --AVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCN-----ILGGDINPKAHRVFYSG 404
A Y+ S LSRA ++ + L+ L WC Y N H FY+
Sbjct: 407 QGATCYIGSMLSRASYIDLSTTMEWLEVLSHWCTTYVNEMIDRTTDATAGSTRHGTFYAV 466
Query: 405 CQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAAR 464
QA + CFR R I+ + ++ L ++ L PL V F S++ +
Sbjct: 467 FQAFLVAFCFRYREIVQAKEM-IKIHHWGLGHIVHSTLEPLSYISHPVALCFATISRSMQ 525
Query: 465 LFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
L V N +L ++ + + + FPFD L++S F
Sbjct: 526 LVYV------NHILPAKPAE----MMPFEPHFPFDSYSLERSLSF 560
>gi|344303281|gb|EGW33555.1| hypothetical protein SPAPADRAFT_60895 [Spathaspora passalidarum
NRRL Y-27907]
Length = 672
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 122/289 (42%), Gaps = 56/289 (19%)
Query: 276 SLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATML 335
S + L+ L +++ L H+ T + I+FV+F+ PE + +L
Sbjct: 350 SFTEDELNNGNGVNLFNTITSLFKSHILPTHFT-KSIQFVLFHISQYHPE-LADSYLVLL 407
Query: 336 ADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEY-----CNI-- 388
DV + R+ A+ YL+S+++RA+ LS IV ++ LV W +Y C I
Sbjct: 408 IDVAFNPKEILEKRLKAIQYLSSYIARAKQLSRHQIVFVVSYLVGWLDKYIIERECEIAD 467
Query: 389 -----------LGGDINPKAHRVFYSGCQAIMYVLCFRMRSI---------MDIP--RLK 426
+GG + ++FY+ QA++Y+ CFR ++ +D P K
Sbjct: 468 IESSRRNDNKQVGG---MERFKLFYATFQALLYIFCFRHDTLFKNGESLPTIDTPSGSFK 524
Query: 427 SQL---------LLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARL---FTVSETFVF 474
++ L + + NPLK C +VV F + + + +++ E
Sbjct: 525 TKQSSGSEWECDLDKFFQRAIIAKFNPLKFCDETVVYIFAKLATKLNVCYCYSIIEHNKR 584
Query: 475 NDLLES----ELSRAFGGLER------LDMFFPFDPCLLKKSDRFANAT 513
+L+S L A G ++ L+ +FPFDP +L S + N
Sbjct: 585 ERMLQSNGSMNLPSAVGNFKQKQEFLDLEAYFPFDPMVLPTSKKIVNKN 633
>gi|298706668|emb|CBJ29597.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 880
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 287 IAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPP 346
+A LL SL+ L FE + ++FV+F+A G + L V P
Sbjct: 315 VARLLKSLL-LVFEENILPTHRSKFVQFVLFFASGR-ARGLGYALVSKLVGVLGDESRPK 372
Query: 347 LTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEY 385
LTR S+V+YLASFL+RA F+ P + + ++ L+DW +Y
Sbjct: 373 LTRQSSVAYLASFLARASFVDPSLVSTAVQSLLDWAGQY 411
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 128/277 (46%), Gaps = 42/277 (15%)
Query: 39 GDNDNYNQLVAVMHLSGRLDPDNRALLETSLKALSGAVSYIDISHHE--SLLVSIFGMSM 96
GD +Y LVA L R DP+ L LS V+ I E L+ ++F
Sbjct: 5 GDGHHYQHLVA--QLLTRDDPET---LWRLYLGLSQCVTIISQQPDEFKELVDALFRFD- 58
Query: 97 WNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNF--TPPSYFLDKLKEPHGLERKHQ 154
W ++ + GL+ L ++N + + MLV N TP + +P L R+H
Sbjct: 59 WRGSDKIVQSFSGLLQHLVSANSTCMVPAMHMLVRNLVLTPRDLDCEGNVDPAALTRQHN 118
Query: 155 VLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVV--YMENTLKLESSA 212
V HAAL++ LVP ++L ++ Q P H RL+ V+ Y + L++ A
Sbjct: 119 V----HAALQASLTLVPSGRSKLFGVLKQNYP-----HRRLRAEVLSDYALHALRVVQYA 169
Query: 213 MGELVRSTLLMAVVDRLIDLDMEIGWDD----ILHD--DFSKGIFEMELEDVEEAADDAE 266
L+ ++L ++++ +++D+EI D ++ D D +F M+ + V+ AD +
Sbjct: 170 --PLIEESVLRLIIEKGLEIDVEIKIMDTGEAVIDDEEDECDALFTMD-DVVDGTADKKK 226
Query: 267 QVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLE 303
Q DE+ + +A+ LD +M++ F +L+
Sbjct: 227 QTTDEV------------DEMADKLDGVMLVVFNYLD 251
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 63/154 (40%), Gaps = 43/154 (27%)
Query: 394 NPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVV 453
P H +FYS CQA YV+CFR + + SQ ++ + +L L PL+ CL +V
Sbjct: 500 RPADHMLFYSVCQATFYVMCFRGDELAAMEGFDSQAVIW--QRLLTCPLYPLRRCLDTVR 557
Query: 454 SEFL------------------------QQSKAARLFTVSETF-------------VFND 476
EF ++S+ ++ TV +F N
Sbjct: 558 REFARLCCGLMDAYLDRDLLEHLAGISEERSQVSQTITVGSSFSCSTPRSSSSMSMSSNA 617
Query: 477 LLESELSRAFGGLER----LDMFFPFDPCLLKKS 506
+ GGL R LD FFPFDP LL++S
Sbjct: 618 MWTPSRVTKAGGLGRGSNPLDSFFPFDPYLLRRS 651
>gi|402226235|gb|EJU06295.1| RNA polymerase I-specific transcription initiation factor RRN3
[Dacryopinax sp. DJM-731 SS1]
Length = 706
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 97/245 (39%), Gaps = 49/245 (20%)
Query: 310 RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPC 369
R +F++FY +LD L +L + R+++VSY+A F+SRA C
Sbjct: 368 RYTQFLLFYLTSLDASFADLFQGLLLQKALFDADTNAVVRLASVSYVAGFVSRAN----C 423
Query: 370 FIVSLLKRLVDWCLEYCNI---LGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMD----- 421
+R+V EY + L D FY+ Q IM + CFR R + +
Sbjct: 424 VNRDNTRRVVSLLCEYLSRRLDLEEDRTDTRGERFYAIAQGIMIIFCFRWRDLQERDTAE 483
Query: 422 -----------IPRLKSQLLLMP----LETVLKHDLNPLKVCLPSVVSEF---------- 456
+ +++ L MP ++ + LNPLK C VV +F
Sbjct: 484 DSSDTEDEESAVGPIRTTGLWMPELSVMQRAVTSPLNPLKYCAKHVVHQFAAVAKHTGFL 543
Query: 457 -----LQQSKAARLFTVSETFVFNDLLESELSR--AFGGLER-----LDMFFPFDPCLLK 504
++ ++ A L S + + +R + L R +D FFPFDP L
Sbjct: 544 YCHSIIEANRRAGLLYSSAVWNEGSPTSATPTRTSSVRSLAREEPPEMDSFFPFDPYTLP 603
Query: 505 KSDRF 509
++ +
Sbjct: 604 ATEGY 608
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 109/243 (44%), Gaps = 23/243 (9%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNR-ALLETSLKALSGAVSYIDISHHESL 87
V+ AL + G N Y +LV + + P L + L ALS VS +D + SL
Sbjct: 6 VKNALGERRKGKNGPYEELVTQFSTASKPGPTTSLEQLRSWLDALSHVVSQLD-KLYSSL 64
Query: 88 LVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPH 147
+ S+ + D + + + L ++ +Y+ + L V FT + LK
Sbjct: 65 VDSVLNLPWSTADELFVKSYIAFVGLLVSARPEYLGNVLERNVKGFT----YNSGLKVVE 120
Query: 148 GLE--------RKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIV 199
L ++ V R HA + L+P P + P++ + P +K E V
Sbjct: 121 NLATNGATSPMKRGTVYDRQHALTFHLLSLIPTLPATIFPVLSKHFP---HKREPKHAQV 177
Query: 200 VYMENTLKLESSAMGELVRSTLLMAVVDR--LIDLDMEIGWDDI--LHDDFSKGIFEMEL 255
Y+ N L++ SA + ++ VV+R LID++++I ++D+ +D + GIFE++
Sbjct: 178 TYIRNLLRI--SAYCSQISGRIMGLVVERAVLIDVEVQIAYEDLEGANDTDADGIFELDP 235
Query: 256 EDV 258
D+
Sbjct: 236 FDL 238
>gi|149248526|ref|XP_001528650.1| hypothetical protein LELG_01170 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448604|gb|EDK42992.1| hypothetical protein LELG_01170 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 600
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 116/291 (39%), Gaps = 69/291 (23%)
Query: 276 SLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATML 335
S + + +S L +++ L H+ T +LI+F++F+ PE F +L
Sbjct: 251 SFTNEEISNGNGVTLFNTINSLFKSHILPTHFT-KLIQFLLFHITQFQPE-LADSFLVLL 308
Query: 336 ADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDW-----------CLE 384
DV + R+ A+ YL+S+++RA+ LS IV ++ L+ W LE
Sbjct: 309 IDVAFNPSEILEKRLKAMQYLSSYIARAKNLSRHQIVFIVSYLMGWINKYIMEREQEALE 368
Query: 385 YCNILGGDINPKAHR------------------VFYSGCQAIMYVLCFRMRSIMDIPRLK 426
+ N + +R +FYS QA++Y+ CFR ++ K
Sbjct: 369 FQNNKNKTTSRNDNRNHNTNQSQQQTGGMERFKLFYSAFQALLYIFCFRHETLR-----K 423
Query: 427 SQLLLMP------------LETVLKHDLNPLKVCLPSVVSEF---------------LQQ 459
+ P + V+ NPLK C +VV F ++
Sbjct: 424 QNTAVGPSNSEWECEIDKFFQRVIIAKFNPLKFCDETVVYIFAKLATKLNVCYCYSIIEH 483
Query: 460 SKAARLFTVSETFVFNDLLESELSRAFGGLERLDM--FFPFDPCLLKKSDR 508
+K R+ + T + S ++ E LD+ +FPFDP +L S R
Sbjct: 484 NKRERILQTNGTLA----MPSAVANFKQKQEFLDLEAYFPFDPLVLPLSKR 530
>gi|224014108|ref|XP_002296717.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220968572|gb|EED86918.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 1104
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 71/178 (39%), Gaps = 45/178 (25%)
Query: 331 FATMLADVFVS----GLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYC 386
+ L D+F S G +P R + YLASF+SRA ++ P + + ++ W Y
Sbjct: 758 WCAQLIDLFYSPDYAGEHP---RQTVCCYLASFVSRATYVCPETVCECVAAILRWAEVYI 814
Query: 387 NILGGDINP----------------------KAHRVFYSGCQAIMYVLCFRMRSIMDIPR 424
+ G +N + H +F++ CQA Y++CFR ++ R
Sbjct: 815 STHSGVVNTGSSTPGPRRKSSSGIGNTQHPCEVHALFFTACQAAFYIMCFRGVEAIEYWR 874
Query: 425 LKSQLLLMP----------------LETVLKHDLNPLKVCLPSVVSEFLQQSKAARLF 466
+ P ++ H+L PLK CL SV EFL + LF
Sbjct: 875 NACEHKDDPESPYADPESVDIGAERWRSICGHELQPLKYCLESVRVEFLHLAGELDLF 932
>gi|238881819|gb|EEQ45457.1| hypothetical protein CAWG_03784 [Candida albicans WO-1]
Length = 556
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 91/444 (20%), Positives = 179/444 (40%), Gaps = 79/444 (17%)
Query: 105 DALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALK 164
++ +++L ++ KY+ L+ F P H++L++
Sbjct: 118 ESYSQFLVALVSTLPKYLHEVTNKLIQEFDSP-----------NTTHHHEILTK------ 160
Query: 165 SIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMA 224
I VP + + ++ + P H+ K + Y++N +++ ++ ++
Sbjct: 161 -IIKYVPTSINSIPQLLQKNFP--HHISSSTKELTNYVQNLVRVLDYTPE--LQFSIWQL 215
Query: 225 VVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSG 284
+++ I LD+E+ ++ E+E E D+E DE + S KSLS
Sbjct: 216 IIESSIKLDVELQ-----NELDDLDDEEIEDLISGEEDSDSE---DEWEVTTTSIKSLSS 267
Query: 285 NL---IAELLDSLM-VLTFEHLESCEGTG-------------------RLIEFVMFYACA 321
L I+ LL + T E L + G + I+F++F+
Sbjct: 268 KLDSIISTLLTTTANSFTIEELNNGNGVNLFNTINSLFKSHILPTHFTKSIQFILFHITQ 327
Query: 322 LDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDW 381
PE + +L DV + R+ A+ YL+S+++RA+ LS ++ ++ LV W
Sbjct: 328 FQPE-LADSYLVLLIDVAFNPSEILEKRLKAMQYLSSYIARAKNLSRHQVIFIVSYLVGW 386
Query: 382 CLEYC------------NILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQL 429
++ +GG + ++FY+ QA++Y+ CFR +
Sbjct: 387 LNKFIIEREQEVESSGDKQVGG---MERFKLFYAAFQALLYIFCFRHELLSTTENDWECD 443
Query: 430 LLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARL---FTVSETFVFNDLLESE-LSRA 485
L + + NPLK C +VV F + + + +++ E +L + L A
Sbjct: 444 LDKFFQRAILTKFNPLKFCDETVVYIFAKLATKLNVCYCYSIIEHNKRERMLHTNALPSA 503
Query: 486 FGGLER------LDMFFPFDPCLL 503
G ++ L+ +FPFDP +L
Sbjct: 504 VGNFKQKQEFLDLEAYFPFDPLVL 527
>gi|146413997|ref|XP_001482969.1| hypothetical protein PGUG_04924 [Meyerozyma guilliermondii ATCC
6260]
Length = 650
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 101/234 (43%), Gaps = 34/234 (14%)
Query: 310 RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPC 369
+L +F++F+ E F ML D+ R+ A+ YL+S+++RA+ LS
Sbjct: 385 KLTQFLLFHISQSKAE-LSDAFLVMLIDIAFKVDEMVEKRIKAMQYLSSYIARAKSLSRD 443
Query: 370 FIVSLLKRLVDWCLEY-----CNILGGDINPKAH---------RVFYSGCQAIMYVLCFR 415
+V ++ L++W Y C I + N ++FY+ Q ++YV CFR
Sbjct: 444 QVVFVVSYLMEWLNRYVQERECEISDYEDNKTGSKSVGGMERFKLFYAAFQVLIYVFCFR 503
Query: 416 MRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEF---------------LQQS 460
+ +++ + + V+ NPLK C +VV F ++ +
Sbjct: 504 HQMLLNSSGEWECEIDQFFQRVIVTKFNPLKYCDETVVFIFAKIATKMNVCYCYSIIEHN 563
Query: 461 KAAR-LFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRFANAT 513
K R L T + + + + +L + F LE +FPFDP +L S +A
Sbjct: 564 KRERMLLTRGKNNLPSAVYNFKLKQEFLDLE---AYFPFDPIVLPNSKEIISAN 614
>gi|68491456|ref|XP_710488.1| hypothetical protein CaO19.1923 [Candida albicans SC5314]
gi|68491495|ref|XP_710469.1| hypothetical protein CaO19.9479 [Candida albicans SC5314]
gi|46431674|gb|EAK91209.1| hypothetical protein CaO19.9479 [Candida albicans SC5314]
gi|46431695|gb|EAK91229.1| hypothetical protein CaO19.1923 [Candida albicans SC5314]
Length = 556
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 91/444 (20%), Positives = 179/444 (40%), Gaps = 79/444 (17%)
Query: 105 DALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALK 164
++ +++L ++ KY+ L+ F P H++L++
Sbjct: 118 ESYSQFLVALVSTLPKYLHEVTNKLIQEFDSP-----------NTTHHHEILTK------ 160
Query: 165 SIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMA 224
I VP + + ++ + P H+ K + Y++N +++ ++ ++
Sbjct: 161 -IIKYVPTSINSIPQLLQKNFP--HHISSSTKELTNYVQNLVRVLDYTPE--LQFSIWQL 215
Query: 225 VVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSG 284
+++ I LD+E+ ++ E+E E D+E DE + S KSLS
Sbjct: 216 IIESSIKLDVELQ-----NELDDLDDEEIEDLISGEEDSDSE---DEWEVTTTSIKSLSS 267
Query: 285 NL---IAELLDSLM-VLTFEHLESCEGTG-------------------RLIEFVMFYACA 321
L I+ LL + T E L + G + I+F++F+
Sbjct: 268 KLDSIISTLLTTTANSFTIEELNNGNGVNLFNTINSLFKSHILPTHFTKSIQFILFHITQ 327
Query: 322 LDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDW 381
PE + +L DV + R+ A+ YL+S+++RA+ LS ++ ++ LV W
Sbjct: 328 FQPE-LADSYLVLLIDVAFNPSEILEKRLKAMQYLSSYIARAKNLSRHQVIFIVSYLVGW 386
Query: 382 CLEYC------------NILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQL 429
++ +GG + ++FY+ QA++Y+ CFR +
Sbjct: 387 LNKFIIEREQEVESSGDKQVGG---MERFKLFYAAFQALLYIFCFRHELLSTTENDWECD 443
Query: 430 LLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARL---FTVSETFVFNDLLESE-LSRA 485
L + + NPLK C +VV F + + + +++ E +L + L A
Sbjct: 444 LDKFFQRAILTKFNPLKFCDETVVYIFAKLATKLNVCYCYSIIEHNKRERMLHTNALPSA 503
Query: 486 FGGLER------LDMFFPFDPCLL 503
G ++ L+ +FPFDP +L
Sbjct: 504 VGNFKQKQEFLDLEAYFPFDPLVL 527
>gi|190409712|gb|EDV12977.1| DNA independent RNA polymerase I transcription factor
[Saccharomyces cerevisiae RM11-1a]
Length = 627
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 114/305 (37%), Gaps = 67/305 (21%)
Query: 257 DVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVL---------TFEHLESCEG 307
D+ E D E+ EL G K LS L DS++ L T E LES EG
Sbjct: 306 DIIEGMDGTEEYNVELTQGI---KELSTKL-----DSILTLVSTHVEEQVTPESLESGEG 357
Query: 308 TG-------------------RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLT 348
G R I+++MF+ E F L D+ +
Sbjct: 358 VGVFNTLTTLFKTHVLPTYYTRSIQYIMFHVSQQQLELMD-SFLVTLIDISFAANEAAEK 416
Query: 349 RMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA----HRVFYSG 404
++ ++ YL S+++RA+ LS I+ + L W Y +++ + + FY+
Sbjct: 417 KIKSLQYLGSYIARAKKLSRTQIIFVASYLTSWLNRYVIEREEEVDQRGGMERFKHFYAA 476
Query: 405 CQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVV---SEFLQQSK 461
QA+ Y+ CFR D L + ++ NPLK C +V+ + QQ
Sbjct: 477 FQALCYIFCFRHNIFRDTDGNWECELDKFFQRMVISKFNPLKFCNENVMLMFARIAQQES 536
Query: 462 AARLFTVSETFVFNDLLESELSRAFGGLER----------------------LDMFFPFD 499
A F++ E N+ L + +A + L +FP+D
Sbjct: 537 VAYCFSIIEN-NNNERLRGIIGKADSDKKENSAQANTTSSSWSLATRQQFIDLQSYFPYD 595
Query: 500 PCLLK 504
P LK
Sbjct: 596 PLFLK 600
>gi|401624917|gb|EJS42954.1| rrn3p [Saccharomyces arboricola H-6]
Length = 627
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 117/301 (38%), Gaps = 58/301 (19%)
Query: 257 DVEEAADDAEQVGDELPSGSLSRKSLSGNLIAEL-LDSLMV---LTFEHLESCEGTG--- 309
DV E D AE+ EL G K LS L A L L S V +T E LE+ +G G
Sbjct: 305 DVIEGMDGAEEYNVELTQGI---KELSTKLDAILSLVSTHVEEQVTPESLENGDGVGVFN 361
Query: 310 ----------------RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAV 353
R I+++MF+ E F L D+ + ++ ++
Sbjct: 362 TLTTLFKTHVLPTYYTRSIQYIMFHVSQQQLELMD-SFLVTLIDISFAANEAAEKKIKSL 420
Query: 354 SYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA----HRVFYSGCQAIM 409
YL S+++RA+ LS I+ + L W Y +++ + + FY+ QA+
Sbjct: 421 QYLGSYIARAKKLSRTQIIFVASYLTSWLNRYVIEREEEVDKRGGMERFKHFYAAFQALC 480
Query: 410 YVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVV---SEFLQQSKAARLF 466
Y+ CFR D L + ++ NPLK C +V+ + QQ A F
Sbjct: 481 YIFCFRHNIFRDTNGNWECELDKFFQRMVISKFNPLKFCNENVMLMFARIAQQESVAYCF 540
Query: 467 TVSETFVFNDLLESELSRA-FGGLER----------------------LDMFFPFDPCLL 503
++ E N+ L + +A ER L +FPFDP L
Sbjct: 541 SIIEN-NNNERLRGIIGKADTDRKERSLQADTASSSSWSLATRQQFIDLQSYFPFDPLFL 599
Query: 504 K 504
K
Sbjct: 600 K 600
>gi|367008530|ref|XP_003678766.1| hypothetical protein TDEL_0A02230 [Torulaspora delbrueckii]
gi|359746423|emb|CCE89555.1| hypothetical protein TDEL_0A02230 [Torulaspora delbrueckii]
Length = 616
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 129/581 (22%), Positives = 219/581 (37%), Gaps = 113/581 (19%)
Query: 10 AESHEMEDVNISDLELVYH---VREALTSVQSGDNDNY----NQLVAVMHLSGRLDPDNR 62
AESH + + + SD+ + + VR AL ++S NQ+ ++ N
Sbjct: 38 AESHGITNHDDSDVSIEMYKKFVRSALDELESKSCTQLSLIANQVALPKKSENQISITNL 97
Query: 63 ALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDP-DVMDALKGLIISLAASNGKY 121
+L L LS ++ ID S L+ +I W P + I L +S K+
Sbjct: 98 GVL---LDVLSDNINRIDTSRASPLIQAIINFEKWWELPSQTLGKYIFFIRVLCSSIPKW 154
Query: 122 VDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIV 181
+L+S F P L+K H + R +L + +++ I +P +L P
Sbjct: 155 WQDVSMVLISGFHLP---LEKTVSHHDMLR--YLLKMIPSSMGFIDIYMP----KLFP-- 203
Query: 182 VQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIG---- 237
N ++ K +V Y+ N LK + + ++ +++R+I LD+E+
Sbjct: 204 --------NNNDSCKKLVNYISNLLKF--TGYCKELQFQAWSLIIERVISLDVELQNELD 253
Query: 238 --------------WDDILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLS 283
DD D+ + E++ E D DE+ G S
Sbjct: 254 ELDDDIDDDDLNDDEDDEDEDEEQDDDQDKEIDGNETKYDSDASDDDEVMEGQEEYNVQS 313
Query: 284 GNLIAEL---LDSLMVL---------TFEHLESCEGTG-------------------RLI 312
I EL LD+++ L T E LES EG + I
Sbjct: 314 SQNIKELSTKLDAILTLITDCLGDKVTPESLESGEGVSIFNTITTLFKTHVLPTYFTKSI 373
Query: 313 EFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIV 372
+++MF+ E F L D+ S TR+ ++ YL S+++RA+ LS I+
Sbjct: 374 QYIMFHISQQQIELMD-SFLVTLIDISFSPTETAETRIKSLQYLGSYIARAKKLSRTQII 432
Query: 373 SLLKRLVDWCLEYCNILGGDINPKA----HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQ 428
+ L W Y +++ + FY+ Q++ Y+ CFR + D
Sbjct: 433 FVASYLTSWLNRYVLEREEEVDQPGGMDRFKHFYAAFQSLCYIFCFRYQLFRDGDGNWEC 492
Query: 429 LLLMPLETVLKHDLNPLKVCLPSVVSEFL---QQSKAARLFTVSETFVFNDLLESELSRA 485
L + ++ NPLK C +V+ F Q A F++ E N L + R
Sbjct: 493 ELEKFFQRMVISKFNPLKYCNENVMLMFARISQHEDVAYCFSIIEN-NNNQRLRGIIGR- 550
Query: 486 FGGLER---------------------LDMFFPFDPCLLKK 505
G +R L +FP+DP +L++
Sbjct: 551 -GDTDRKGAYSSAAMTWSLATRQQFIDLQSYFPYDPLILER 590
>gi|387219249|gb|AFJ69333.1| rna polymerase i-specific transcription initiation factor rrn3
[Nannochloropsis gaditana CCMP526]
Length = 527
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 118/314 (37%), Gaps = 95/314 (30%)
Query: 287 IAELLDSLMVLTFEHLE---SCEGTG----------------------RLIEFVMFYACA 321
+A+ LDS+M+L F+HL+ SC+G + ++F FY A
Sbjct: 1 MADTLDSVMLLLFQHLDKAISCDGQAASRLFEGLGPVLDGSILATHRCKYVQFAFFYLAA 60
Query: 322 LDPENCGLRFATMLADVFVSGLY-----PPLTRMSAVSYLASFLSRARFLSPCFIVSLLK 376
D R +L D ++ P +TR++A++YL+SFL R+R L IV L
Sbjct: 61 RDLSG---RVPVLLVDRLLARAVEEDDAPMVTRLAALAYLSSFLVRSRALPVEEIVRALT 117
Query: 377 RLVD----------------------------------------WCLEYCNILGG----- 391
L++ W E GG
Sbjct: 118 ALLETAEAFLARRAADLMVYMDHAWLKEEDPGSWEAGVVKKEERWLGEEEAPYGGKGPTE 177
Query: 392 -DINPKAHR---VFYSGCQAIMYVLCFRMRS-----IMDIP-------RLKSQLLLMPLE 435
D + +A FYS CQAI YV+ F S ++ + RL QL L
Sbjct: 178 EDADGQADDRPVFFYSLCQAIFYVVAFHHSSSEGEDVLGVRAAETGAVRLGGQLKSR-LG 236
Query: 436 TVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMF 495
+ L PL CL SV EFL+ ++ L E E G L+ +
Sbjct: 237 RLACSPLRPLDHCLESVKREFLRLARLHGLVPWGALGGLGGGEEEEELVTEGNHNPLNSY 296
Query: 496 FPFDPCLLKKSDRF 509
FPFDP LL++S F
Sbjct: 297 FPFDPFLLRRSSGF 310
>gi|403224145|dbj|BAM42275.1| uncharacterized protein TOT_040000644 [Theileria orientalis strain
Shintoku]
Length = 999
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 113/269 (42%), Gaps = 51/269 (18%)
Query: 281 SLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFV 340
S+ G +A+++ + TF+ + + ++F+ F+ +++ + + F L +
Sbjct: 563 SIGGYTVADMIVMDLFDTFDQIILPTYNCKYVQFIYFFVLSINHKWARM-FIQRLFSIVY 621
Query: 341 SGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCN------------- 387
S + R +A SY++S + R+ ++ P ++ L L L Y +
Sbjct: 622 SNAQHAIRRRAAASYISSLICRSNYVLPQYVCGSLNHLF-GLLSYFDEQTSGSGHSQSLG 680
Query: 388 ILGGDINPKAHR----------------VFYSGCQAIMYVLCFRMRSIMDIPRL------ 425
G + KA +FYS Q I+Y++C+R I P L
Sbjct: 681 AKGATLTMKAGSRRGNMHCFSLASAKLSLFYSILQDILYIICYRTDLISASPSLVAFIKD 740
Query: 426 KSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRA 485
+ LL L++ L+ PL C SV++E ++ + A + E + + ESEL+ +
Sbjct: 741 TRRGLLAYLDSYLR----PLNYCKHSVITEAIRST--AHFENLKEFHAYLEAAESELASS 794
Query: 486 FGGLER--------LDMFFPFDPCLLKKS 506
E +D FFPFDP LL S
Sbjct: 795 RRSSEDYRWSLYSPIDSFFPFDPYLLHHS 823
>gi|6322724|ref|NP_012797.1| Rrn3p [Saccharomyces cerevisiae S288c]
gi|549712|sp|P36070.1|RRN3_YEAST RecName: Full=RNA polymerase I-specific transcription initiation
factor RRN3
gi|486211|emb|CAA81966.1| RRN3 [Saccharomyces cerevisiae]
gi|1403568|emb|CAA96470.1| Rrn3p [Saccharomyces cerevisiae]
gi|285813139|tpg|DAA09036.1| TPA: Rrn3p [Saccharomyces cerevisiae S288c]
gi|392298314|gb|EIW09412.1| Rrn3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 627
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 114/305 (37%), Gaps = 67/305 (21%)
Query: 257 DVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVL---------TFEHLESCEG 307
D+ E D E+ EL G K LS L DS++ L T E LES EG
Sbjct: 306 DIIEGMDGTEEYNVELTQGI---KELSTKL-----DSILTLVSTHVEEQVTPESLESGEG 357
Query: 308 TG-------------------RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLT 348
G R I+++MF+ E F L D+ +
Sbjct: 358 VGVFNTLTTLFKTHVLPTYYTRSIQYIMFHVSQQQLELMD-SFLVTLIDISFAVNEAAEK 416
Query: 349 RMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA----HRVFYSG 404
++ ++ YL S+++RA+ LS I+ + L W Y +++ + + FY+
Sbjct: 417 KIKSLQYLGSYIARAKKLSRTQIIFVASYLTSWLNRYVIEREEEVDQRGGMERFKHFYAA 476
Query: 405 CQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVV---SEFLQQSK 461
QA+ Y+ CFR D L + ++ NPLK C +V+ + QQ
Sbjct: 477 FQALCYIFCFRHNIFRDTDGNWECELDKFFQRMVISKFNPLKFCNENVMLMFARIAQQES 536
Query: 462 AARLFTVSETFVFNDLLESELSRAFGGLER----------------------LDMFFPFD 499
A F++ E N+ L + +A + L +FP+D
Sbjct: 537 VAYCFSIIEN-NNNERLRGIIGKADSDKKENSAQANTTSSSWSLATRQQFIDLQSYFPYD 595
Query: 500 PCLLK 504
P LK
Sbjct: 596 PLFLK 600
>gi|347948697|pdb|3TJ1|A Chain A, Crystal Structure Of Rna Polymerase I Transcription
Initiation Factor Rrn3
gi|347948698|pdb|3TJ1|B Chain B, Crystal Structure Of Rna Polymerase I Transcription
Initiation Factor Rrn3
Length = 649
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 114/305 (37%), Gaps = 67/305 (21%)
Query: 257 DVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVL---------TFEHLESCEG 307
D+ E D E+ EL G K LS L DS++ L T E LES EG
Sbjct: 328 DIIEGMDGTEEYNVELTQGI---KELSTKL-----DSILTLVSTHVEEQVTPESLESGEG 379
Query: 308 TG-------------------RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLT 348
G R I+++MF+ E F L D+ +
Sbjct: 380 VGVFNTLTTLFKTHVLPTYYTRSIQYIMFHVSQQQLELMD-SFLVTLIDISFAVNEAAEK 438
Query: 349 RMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA----HRVFYSG 404
++ ++ YL S+++RA+ LS I+ + L W Y +++ + + FY+
Sbjct: 439 KIKSLQYLGSYIARAKKLSRTQIIFVASYLTSWLNRYVIEREEEVDQRGGMERFKHFYAA 498
Query: 405 CQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVV---SEFLQQSK 461
QA+ Y+ CFR D L + ++ NPLK C +V+ + QQ
Sbjct: 499 FQALCYIFCFRHNIFRDTDGNWECELDKFFQRMVISKFNPLKFCNENVMLMFARIAQQES 558
Query: 462 AARLFTVSETFVFNDLLESELSRAFGGLER----------------------LDMFFPFD 499
A F++ E N+ L + +A + L +FP+D
Sbjct: 559 VAYCFSIIEN-NNNERLRGIIGKADSDKKENSAQANTTSSSWSLATRQQFIDLQSYFPYD 617
Query: 500 PCLLK 504
P LK
Sbjct: 618 PLFLK 622
>gi|256269931|gb|EEU05189.1| Rrn3p [Saccharomyces cerevisiae JAY291]
gi|259147716|emb|CAY80966.1| Rrn3p [Saccharomyces cerevisiae EC1118]
gi|323332734|gb|EGA74139.1| Rrn3p [Saccharomyces cerevisiae AWRI796]
gi|349579443|dbj|GAA24605.1| K7_Rrn3p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365764554|gb|EHN06076.1| Rrn3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 627
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 114/305 (37%), Gaps = 67/305 (21%)
Query: 257 DVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVL---------TFEHLESCEG 307
D+ E D E+ EL G K LS L DS++ L T E LES EG
Sbjct: 306 DIIEGMDGTEEYNVELTQGI---KELSTKL-----DSILTLVSTHVEEQVTPESLESGEG 357
Query: 308 TG-------------------RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLT 348
G R I+++MF+ E F L D+ +
Sbjct: 358 VGVFNTLTTLFKTHVLPTYYTRSIQYIMFHVSQQQLELMD-SFLVTLIDISFAVNEAAEK 416
Query: 349 RMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA----HRVFYSG 404
++ ++ YL S+++RA+ LS I+ + L W Y +++ + + FY+
Sbjct: 417 KIKSLQYLGSYIARAKKLSRTQIIFVASYLTSWLNRYVIEREEEVDQRGGMERFKHFYAA 476
Query: 405 CQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVV---SEFLQQSK 461
QA+ Y+ CFR D L + ++ NPLK C +V+ + QQ
Sbjct: 477 FQALCYIFCFRHNIFRDTDGNWECELDKFFQRMVISKFNPLKFCNENVMLMFARIAQQES 536
Query: 462 AARLFTVSETFVFNDLLESELSRAFGGLER----------------------LDMFFPFD 499
A F++ E N+ L + +A + L +FP+D
Sbjct: 537 VAYCFSIIEN-NNNERLRGIIGKADSDKKENSAQANTTSSSWSLATRQQFIDLQSYFPYD 595
Query: 500 PCLLK 504
P LK
Sbjct: 596 PLFLK 600
>gi|323304168|gb|EGA57945.1| Rrn3p [Saccharomyces cerevisiae FostersB]
Length = 627
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 114/305 (37%), Gaps = 67/305 (21%)
Query: 257 DVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVL---------TFEHLESCEG 307
D+ E D E+ EL G K LS L DS++ L T E LES EG
Sbjct: 306 DIIEGMDGTEEYNVELTQGI---KELSTKL-----DSILTLVSTHVEEQVTPESLESGEG 357
Query: 308 TG-------------------RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLT 348
G R I+++MF+ E F L D+ +
Sbjct: 358 VGVFNTLTTLFKTHVLPTYYTRSIQYIMFHVSQQQLELMD-SFLVTLIDISFAVNEAAEK 416
Query: 349 RMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA----HRVFYSG 404
++ ++ YL S+++RA+ LS I+ + L W Y +++ + + FY+
Sbjct: 417 KIKSLQYLGSYIARAKKLSRTQIIFVASYLTSWLNRYVIEREEEVDQRGGMERFKHFYAA 476
Query: 405 CQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVV---SEFLQQSK 461
QA+ Y+ CFR D L + ++ NPLK C +V+ + QQ
Sbjct: 477 FQALCYIFCFRHNIFRDTDGNWECELDKFFQRMVISKFNPLKFCNENVMLMFARIAQQES 536
Query: 462 AARLFTVSETFVFNDLLESELSRAFGGLER----------------------LDMFFPFD 499
A F++ E N+ L + +A + L +FP+D
Sbjct: 537 VAYCFSIIEN-NNNERLRGIIGKADSDKKENSAQANTTSSSWSLATRQQFIDLQSYFPYD 595
Query: 500 PCLLK 504
P LK
Sbjct: 596 PLFLK 600
>gi|323336841|gb|EGA78104.1| Rrn3p [Saccharomyces cerevisiae Vin13]
Length = 626
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 114/305 (37%), Gaps = 67/305 (21%)
Query: 257 DVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVL---------TFEHLESCEG 307
D+ E D E+ EL G K LS L DS++ L T E LES EG
Sbjct: 305 DIIEGMDGTEEYNVELTQGI---KELSTKL-----DSILTLVSTHVEEQVTPESLESGEG 356
Query: 308 TG-------------------RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLT 348
G R I+++MF+ E F L D+ +
Sbjct: 357 VGVFNTLTTLFKTHVLPTYYTRSIQYIMFHVSQQQLELMD-SFLVTLIDISFAVNEAAEK 415
Query: 349 RMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA----HRVFYSG 404
++ ++ YL S+++RA+ LS I+ + L W Y +++ + + FY+
Sbjct: 416 KIKSLQYLGSYIARAKKLSRTQIIFVASYLTSWLNRYVIEREEEVDQRGGMERFKHFYAA 475
Query: 405 CQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVV---SEFLQQSK 461
QA+ Y+ CFR D L + ++ NPLK C +V+ + QQ
Sbjct: 476 FQALCYIFCFRHNIFRDTDGNWECELDKFFQRMVISKFNPLKFCNENVMLMFARIAQQES 535
Query: 462 AARLFTVSETFVFNDLLESELSRAFGGLER----------------------LDMFFPFD 499
A F++ E N+ L + +A + L +FP+D
Sbjct: 536 VAYCFSIIEN-NNNERLRGIIGKADSDKKENSAQANTTSSSWSLATRQQFIDLQSYFPYD 594
Query: 500 PCLLK 504
P LK
Sbjct: 595 PLFLK 599
>gi|323308350|gb|EGA61596.1| Rrn3p [Saccharomyces cerevisiae FostersO]
Length = 626
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 114/305 (37%), Gaps = 67/305 (21%)
Query: 257 DVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVL---------TFEHLESCEG 307
D+ E D E+ EL G K LS L DS++ L T E LES EG
Sbjct: 305 DIIEGMDGTEEYNVELTQGI---KELSTKL-----DSILTLVSTHVEEQVTPESLESGEG 356
Query: 308 TG-------------------RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLT 348
G R I+++MF+ E F L D+ +
Sbjct: 357 VGVFNTLTTLFKTHVLPTYYTRSIQYIMFHVSQQQLELMD-SFLVTLIDISFAVNEAAEK 415
Query: 349 RMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA----HRVFYSG 404
++ ++ YL S+++RA+ LS I+ + L W Y +++ + + FY+
Sbjct: 416 KIKSLQYLGSYIARAKKLSRTQIIFVASYLTSWLNRYVIEREEEVDQRGGMERFKHFYAA 475
Query: 405 CQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVV---SEFLQQSK 461
QA+ Y+ CFR D L + ++ NPLK C +V+ + QQ
Sbjct: 476 FQALCYIFCFRHNIFRDTDGNWECELDKFFQRMVISKFNPLKFCNENVMLMFARIAQQES 535
Query: 462 AARLFTVSETFVFNDLLESELSRAFGGLER----------------------LDMFFPFD 499
A F++ E N+ L + +A + L +FP+D
Sbjct: 536 VAYCFSIIEN-NNNERLRGIIGKADSDKKENSAQANTTSSSWSLATRQQFIDLQSYFPYD 594
Query: 500 PCLLK 504
P LK
Sbjct: 595 PLFLK 599
>gi|151941681|gb|EDN60043.1| DNA independent RNA polymerase I transcription factor
[Saccharomyces cerevisiae YJM789]
Length = 627
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 114/305 (37%), Gaps = 67/305 (21%)
Query: 257 DVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVL---------TFEHLESCEG 307
D+ E D E+ EL G K LS L DS++ L T E LES EG
Sbjct: 306 DIIEGMDGTEEYNVELTQGI---KELSTKL-----DSILTLVSTHVEEQVTPESLESGEG 357
Query: 308 TG-------------------RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLT 348
G R I+++MF+ E F L D+ +
Sbjct: 358 VGVFNTLTTLFKTHVLPTYYTRSIQYIMFHVSQQQLELMD-SFLVTLIDISFAVNEAAEK 416
Query: 349 RMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA----HRVFYSG 404
++ ++ YL S+++RA+ LS I+ + L W Y +++ + + FY+
Sbjct: 417 KIKSLQYLGSYIARAKKLSRTQIIFVASYLTSWLNRYVIEREEEVDQRGGMERFKHFYAA 476
Query: 405 CQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVV---SEFLQQSK 461
QA+ Y+ CFR D L + ++ NPLK C +V+ + QQ
Sbjct: 477 FQALCYIFCFRHNIFRDTDGNWECELDKFFQRMVISKFNPLKFCNENVMLMFARIAQQES 536
Query: 462 AARLFTVSETFVFNDLLESELSRAFGGLER----------------------LDMFFPFD 499
A F++ E N+ L + +A + L +FP+D
Sbjct: 537 VAYCFSIIEN-NNNERLRGIIGKADSDKKENSAQANTTSSSWSLATRQQFIDLQSYFPYD 595
Query: 500 PCLLK 504
P LK
Sbjct: 596 PLFLK 600
>gi|323347742|gb|EGA82006.1| Rrn3p [Saccharomyces cerevisiae Lalvin QA23]
Length = 577
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 114/305 (37%), Gaps = 67/305 (21%)
Query: 257 DVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVL---------TFEHLESCEG 307
D+ E D E+ EL G K LS L DS++ L T E LES EG
Sbjct: 256 DIIEGMDGTEEYNVELTQGI---KELSTKL-----DSILTLVSTHVEEQVTPESLESGEG 307
Query: 308 TG-------------------RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLT 348
G R I+++MF+ E F L D+ +
Sbjct: 308 VGVFNTLTTLFKTHVLPTYYTRSIQYIMFHVSQQQLELMD-SFLVTLIDISFAVNEAAEK 366
Query: 349 RMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA----HRVFYSG 404
++ ++ YL S+++RA+ LS I+ + L W Y +++ + + FY+
Sbjct: 367 KIKSLQYLGSYIARAKKLSRTQIIFVASYLTSWLNRYVIEREEEVDQRGGMERFKHFYAA 426
Query: 405 CQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVV---SEFLQQSK 461
QA+ Y+ CFR D L + ++ NPLK C +V+ + QQ
Sbjct: 427 FQALCYIFCFRHNIFRDTDGNWECELDKFFQRMVISKFNPLKFCNENVMLMFARIAQQES 486
Query: 462 AARLFTVSETFVFNDLLESELSRAFGGLER----------------------LDMFFPFD 499
A F++ E N+ L + +A + L +FP+D
Sbjct: 487 VAYCFSIIEN-NNNERLRGIIGKADSDKKENSAQANTTSSSWSLATRQQFIDLQSYFPYD 545
Query: 500 PCLLK 504
P LK
Sbjct: 546 PLFLK 550
>gi|448110800|ref|XP_004201698.1| Piso0_001896 [Millerozyma farinosa CBS 7064]
gi|359464687|emb|CCE88392.1| Piso0_001896 [Millerozyma farinosa CBS 7064]
Length = 673
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/340 (23%), Positives = 132/340 (38%), Gaps = 100/340 (29%)
Query: 255 LEDVEEAADDAEQVG--------DELPSGSL----SRKSLSGNLIAEL--LDSLMVL--- 297
+E E+ +D E++ DE+P G + + S +GN+ + LDSL+ L
Sbjct: 293 IEPTEKNSDQTEKISIDSDNLSEDEIPEGEIEYLINPVSSTGNIKNLIFKLDSLLFLVLN 352
Query: 298 ------TFEHLESCEGT-------------------GRLIEFVMFYACALDPENCGLRFA 332
T E L G + I+FV F+ PE +
Sbjct: 353 KTSDLFTVEKLNDGSGVFLFNTLTSLFKSHILPTHFTKSIQFVHFHISQYQPELMD-SYL 411
Query: 333 TMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEY-----CN 387
+L D+ + R+ A+ YL+S+++RA+ LS IV ++ L+ W +Y C
Sbjct: 412 VLLIDIAFNVDEILEKRLKAMQYLSSYIARAKKLSKNQIVFVVSYLIGWLNKYVDERECE 471
Query: 388 ILGGDINPKAH--------------RVFYSGCQAIMYVLCFRMRSIM------------- 420
+L H ++FY+ QA++Y+ CFR S+
Sbjct: 472 VLDNIKEKSRHKDVETRQSAGMERFKLFYAAFQALLYIFCFRHNSLFKEADSVYTEPSDS 531
Query: 421 ----DIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARL--------FTV 468
+I + +++L+ NPLK C +VV F + S +
Sbjct: 532 EWECEIDKFFQRMILV--------KFNPLKYCDETVVFIFAKISTKLNVCYCYSILEHNK 583
Query: 469 SETFVFND---LLESELSRAFGGLERLDM--FFPFDPCLL 503
E + ND +L S + E LD+ +FPFDP +L
Sbjct: 584 RERMLQNDTSSMLPSSTTNFRQKQEFLDLEAYFPFDPLVL 623
>gi|426192512|gb|EKV42448.1| hypothetical protein AGABI2DRAFT_188606 [Agaricus bisporus var.
bisporus H97]
Length = 861
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/309 (23%), Positives = 113/309 (36%), Gaps = 95/309 (30%)
Query: 285 NLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGL--------------R 330
N + + D +++ TF+ R +F++F+ +LDPE +
Sbjct: 465 NALLSIFDRVILRTFK--------SRYTQFLIFWYTSLDPEFADIFQGMLVERALLGTSA 516
Query: 331 FATMLADVFVSGLYPP-----------LTRMSAVSYLASFLSRARFL---SPCFIVSLLK 376
T L F G P + R +A SY+ SF+SRA F+ S +V+LL
Sbjct: 517 TTTQLQSEFQEGEGGPSNDASGAHGSTVARAAAASYIGSFVSRALFVDGESTRRVVALLC 576
Query: 377 RLVDWCLE------YCNILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDI-------- 422
+ L+ +I H VFY+ QA+ + CFR R ++D+
Sbjct: 577 EFLMAHLDDVEESMRTQTSALNIGGPQHTVFYAVSQAVFLIFCFRWRDLLDLEEEDGEFN 636
Query: 423 -------------PRLKSQLLLMP----LETVLKHDLNPLKVCLPSVVSEFLQQSKAARL 465
R + MP L+ V+ LNPL+VC +VV +F + ++A
Sbjct: 637 VVGAATDLRQNEGTRGERPRKWMPELAILQRVVNSVLNPLRVCSSNVVMQFARVAQATDF 696
Query: 466 FTVSETFVFNDLLE--------SELSRAFGG--------------------LERLDMFFP 497
N LE S S A + L+ FFP
Sbjct: 697 IYCYTILESNKRLEYASTPRDPSATSLAINQPAEPQSRTPLALKIFEPGSVIAELNTFFP 756
Query: 498 FDPCLLKKS 506
FDP L +S
Sbjct: 757 FDPYRLPRS 765
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 100/224 (44%), Gaps = 21/224 (9%)
Query: 22 DLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRALLETSLK----ALSGAVS 77
D+ L + V AL +G ++ +N+LV+ + R + TSL+ AL+ VS
Sbjct: 61 DMYLAF-VNNALQQKLNGISEPFNELVSQFNPRRRTTETSSLETSTSLRTWILALTHVVS 119
Query: 78 YIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPS 137
++ +H SL+ ++ D + + I L ++ +Y+ L+ + FT S
Sbjct: 120 RLERTH-SSLVEAVINTPWTTLDSATVKSYIIFIGMLLSARPEYLSLVLSRVAQGFTYQS 178
Query: 138 -------YFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHN 190
F + P + + R+H L+ + L+P P+ L P++ Q P H
Sbjct: 179 GIQTLSQAFPESSSSPIT---RRVIYDRLHYLLQHLLSLIPTLPSTLQPLLAQNFP--HK 233
Query: 191 KHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDM 234
+ +L Y+ N L++ SS EL +L +VDR + +D+
Sbjct: 234 RQNQLTQ-STYIRNLLRI-SSYCPELSER-ILATIVDRALQIDV 274
>gi|313225061|emb|CBY20854.1| unnamed protein product [Oikopleura dioica]
Length = 329
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 88/174 (50%), Gaps = 19/174 (10%)
Query: 349 RMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCL-EYCNIL---GGDINPKAHRVFYSG 404
R++ +SYL SFL+RA+F+S + ++ K L C+ E+ + + + V+Y+
Sbjct: 143 RIALLSYLTSFLARAQFVSHSTLRNVAKILSTLCIKEHQRSIPEKEQHFSTEKFGVYYAN 202
Query: 405 CQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEF---LQQSK 461
Q++ Y++ FR + + + + + + ++ LNPL C+PS+ +F +++++
Sbjct: 203 AQSLFYLIIFRHKELGN-----DCIRSLGISEIVFSKLNPLAACVPSIALKFCDIMKETE 257
Query: 462 AARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLL----KKSDRFAN 511
A + E F LL + + +D +FPFD CLL K D+F N
Sbjct: 258 LAFCHHILEQFHERQLLATGSNEIVNP---IDFYFPFDRCLLPMTAAKIDKFYN 308
>gi|397618603|gb|EJK64970.1| hypothetical protein THAOC_14237 [Thalassiosira oceanica]
Length = 1074
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 64/168 (38%), Gaps = 41/168 (24%)
Query: 331 FATMLADVFVSGLYP-PLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNIL 389
F L D F Y + R + V YLASF+SR+ ++ P + + L+ W Y +
Sbjct: 708 FIAKLIDCFFDPDYSGDVPRQTVVCYLASFVSRSTYVCPETVCECIAALLRWTEIYISAH 767
Query: 390 GGDINPKA------------------------HRVFYSGCQAIMYVLCFRMRSIMDIPRL 425
G A H +FY+ CQA Y++CFR + RL
Sbjct: 768 RGTATATASGGKLRRHSSAPAALGSTKHLCEVHTLFYTACQAAYYIMCFRGYEAVKYYRL 827
Query: 426 K--------------SQLLLMP--LETVLKHDLNPLKVCLPSVVSEFL 457
+ + P + H+L PLK CL SV EFL
Sbjct: 828 ACAHKDDNESPYADPESVDIGPKRWRQLCGHELQPLKYCLESVRHEFL 875
>gi|358336320|dbj|GAA43139.2| hypothetical protein CLF_105888 [Clonorchis sinensis]
Length = 877
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 8/107 (7%)
Query: 348 TRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCN--------ILGGDINPKAHR 399
TR++AV+YLAS LSR R ++ LL + WC++Y G ++ HR
Sbjct: 645 TRVAAVAYLASLLSRIRTCPSDLVIELLHDMTRWCVDYVYRNRGLIVVTNGAELLVTEHR 704
Query: 400 VFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLK 446
++Y+ C AI Y++ +++D ++ +PL ++ L+PL+
Sbjct: 705 IYYAVCDAIFYIIVQLHATLLDNEYYRASCETLPLAQIMLSPLSPLE 751
>gi|409079536|gb|EKM79897.1| hypothetical protein AGABI1DRAFT_119954 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 840
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 73/309 (23%), Positives = 113/309 (36%), Gaps = 95/309 (30%)
Query: 285 NLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGL--------------R 330
N + + D +++ TF+ R +F++F+ +LDPE +
Sbjct: 446 NALLSIFDRVILRTFK--------SRYTQFLIFWYTSLDPEFADIFQGMLVERALLGTSA 497
Query: 331 FATMLADVFVSGLYPP-----------LTRMSAVSYLASFLSRARFL---SPCFIVSLLK 376
T L F G P + R +A SY+ SF+SRA F+ S +V+LL
Sbjct: 498 TTTQLQSEFQEGEGGPSNDASGAHGSTVARAAAASYIGSFVSRALFVDGESTRRVVALLC 557
Query: 377 RLVDWCLE------YCNILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDI-------- 422
+ L+ +I H VFY+ QA+ + CFR R ++D+
Sbjct: 558 EFLMAHLDDVEESMRAQTSTLNIGGPQHTVFYAVSQAVFLIFCFRWRDLLDLEEEDGEFN 617
Query: 423 -------------PRLKSQLLLMP----LETVLKHDLNPLKVCLPSVVSEFLQQSKAARL 465
R + MP L+ V+ LNPL+VC +VV +F + ++A
Sbjct: 618 VVGATTDMRQNEGTRGERPRKWMPELAILQRVVNSVLNPLRVCSSNVVMQFARVAQATDF 677
Query: 466 FTVSETFVFNDLLE--------SELSRAFGG--------------------LERLDMFFP 497
N LE S S A + L+ FFP
Sbjct: 678 IYCYTILESNKRLEYASTPRDPSATSLAINQPAEPQSRTPLALKIFEPGSVIAELNTFFP 737
Query: 498 FDPCLLKKS 506
FDP L +S
Sbjct: 738 FDPYRLPRS 746
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 99/224 (44%), Gaps = 21/224 (9%)
Query: 22 DLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRALLETSLK----ALSGAVS 77
D+ L + V AL +G ++ +N+LV+ + R + TSL+ AL+ VS
Sbjct: 42 DMYLAF-VNNALQQKLNGISEPFNELVSQFNPRRRTTETSSLETSTSLRTWILALTHVVS 100
Query: 78 YIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPS 137
++ +H SL+ ++ D + + I L ++ Y+ L+ + FT S
Sbjct: 101 RLERTH-SSLVEAVINTPWTTLDSATVKSYIIFIGMLLSARPGYLSLVLSRVAQGFTYQS 159
Query: 138 -------YFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHN 190
F + P + + R+H L+ + L+P P+ L P++ Q P H
Sbjct: 160 GIQTLSQAFPESSSSPIT---RRVIYDRLHYLLQHLLSLIPTLPSTLQPLLAQNFP--HK 214
Query: 191 KHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDM 234
+ +L Y+ N L++ SS EL +L +VDR + +D+
Sbjct: 215 RQNQLTQ-STYIRNLLRI-SSYCPELSER-ILATIVDRALQIDV 255
>gi|190348382|gb|EDK40826.2| hypothetical protein PGUG_04924 [Meyerozyma guilliermondii ATCC
6260]
Length = 650
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 85/196 (43%), Gaps = 35/196 (17%)
Query: 349 RMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEY-----CNILGGDINPKAH----- 398
R+ A+ YL+S+++RA+ LS +V ++ L++W Y C I + N
Sbjct: 423 RIKAMQYLSSYIARAKSLSRDQVVFVVSYLMEWLNRYVQERECEISDYEDNKTGSKSVGG 482
Query: 399 ----RVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVS 454
++FY+ Q ++YV CFR + +++ + + V+ NPLK C +VV
Sbjct: 483 MERFKLFYAAFQVLIYVFCFRHQMLLNSSGEWECEIDQFFQRVIVTKFNPLKYCDETVVF 542
Query: 455 EF---------------LQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDM--FFP 497
F ++ +K R+ + + L S + E LD+ +FP
Sbjct: 543 IFAKIATKMNVCYCYSIIEHNKRERMLSTRG----KNNLPSAVYNFKSKQEFLDLEAYFP 598
Query: 498 FDPCLLKKSDRFANAT 513
FDP +L S +A
Sbjct: 599 FDPIVLPNSKEIISAN 614
>gi|156845432|ref|XP_001645607.1| hypothetical protein Kpol_1033p56 [Vanderwaltozyma polyspora DSM
70294]
gi|156116272|gb|EDO17749.1| hypothetical protein Kpol_1033p56 [Vanderwaltozyma polyspora DSM
70294]
Length = 620
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 89/224 (39%), Gaps = 31/224 (13%)
Query: 310 RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPC 369
R I+++MF+ E F L D+ S ++ ++ YL S+++RA+ LS
Sbjct: 372 RSIQYIMFHISQQQTELMD-SFLVTLIDIAFSPNETSEKKVKSLQYLGSYIARAKHLSRT 430
Query: 370 FIVSLLKRLVDWCLEYCNILGGDINP----KAHRVFYSGCQAIMYVLCFRMRSIMDIPRL 425
IV + L W Y +++ + + FY+ Q++ Y+ CFR D+
Sbjct: 431 QIVFVASYLTSWLNRYLLEREDEVDQPGGMERFKHFYAAFQSLCYMFCFRHNVFKDVDGK 490
Query: 426 KSQLLLMPLETVLKHDLNPLKVCLPSVVSEF---LQQSKAARLFTVSETFVFNDLLESEL 482
L + ++ NPLK C +V+ F Q A F + ET N+ L +
Sbjct: 491 WECELDKFFQRMVISKFNPLKYCNENVMMMFARITQHEGIAYCFGIIET-NNNERLRGII 549
Query: 483 SRAFGGLER----------------------LDMFFPFDPCLLK 504
R+ E L +FPFDP LLK
Sbjct: 550 GRSASDKEASGSQSISQASTWSLITRQQFIDLQSYFPFDPLLLK 593
>gi|452836350|gb|EME38294.1| hypothetical protein DOTSEDRAFT_161166 [Dothistroma septosporum
NZE10]
Length = 675
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 95/251 (37%), Gaps = 61/251 (24%)
Query: 310 RLIEFVMFYACALDPENCGLRFATMLADVFVS---GLYPPLTRMSAVSYLASFLSRARFL 366
R +F++F+ + P +A D + G R +A +YLASF +R L
Sbjct: 377 RHAQFLLFHFAQISPA-----YANAFVDFLLKLTIGNGQQNIRHTACAYLASFTARGSHL 431
Query: 367 SPCFI---VSLLKRLVDWCLEYCNILGGDINPKAHRVFYSGCQAIMYVLCFRMRSI---- 419
+ + V L RL++ + K+ ++Y+ QA++Y+ CFR R +
Sbjct: 432 NSEIVQDVVGTLCRLLEEMRRRYEPSSSGPDRKSFSIYYAVAQALLYIFCFRWRDLVVHT 491
Query: 420 ----------------------MDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFL 457
M I LK L L + LNPLKV ++V EF
Sbjct: 492 AAADSDTEDMLEEDVLAEGRDLMWINGLKETLTLN-----IHSRLNPLKVASSAIVGEFA 546
Query: 458 QQSKAARLFTVSETFVFNDLL------------------ESELSRAFGG-LERLDMFFPF 498
+ + R V N + E+ L R G +L+ +FPF
Sbjct: 547 KIANHLRFLYVFSILERNRRIRLGNVIAYRSGGLDIGRRETALDRKTGDEHHQLEAYFPF 606
Query: 499 DPCLLKKSDRF 509
DP L +S R+
Sbjct: 607 DPYHLPQSKRW 617
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 48/237 (20%), Positives = 110/237 (46%), Gaps = 18/237 (7%)
Query: 8 DHAESHEMEDVNISDLELVYH-VREALTS-VQSGDNDNYNQLVAVMH------LSGRLDP 59
DH + ++D N ++LV VR + + +G+ N Q + H +G D
Sbjct: 44 DHVDVRILDDWNDKSIDLVREEVRVGIQRHLATGEQQNDTQYAKLQHTLEQDVFAG--DS 101
Query: 60 DNRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNG 119
+ LL+ + A++ + + L+ ++ +S D + + ++ LA ++
Sbjct: 102 PSPRLLKKYIIAITERIPLL--GECGKLVTAVLDLSWVGRDEEFVTIYTRFLVMLAGTHS 159
Query: 120 KYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLP 179
K+V + + LV++F K ++R + SR+H+ ++ + D P + +L+
Sbjct: 160 KFVGTMMDRLVAHFESLPSSTGKFPGEDPVQRS-TMFSRIHSTIRRLLDASPASSKKLMA 218
Query: 180 IVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEI 236
++ PT + K + Y ++ L+L S + EL ++ ++ +V +L+++D+ I
Sbjct: 219 MLRHSFPTDLSS---TKGYLQYQKHLLRL-SDEVPEL-KAEIIAEIVQKLVNIDVSI 270
>gi|354546997|emb|CCE43730.1| hypothetical protein CPAR2_213730 [Candida parapsilosis]
Length = 661
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 117/284 (41%), Gaps = 52/284 (18%)
Query: 274 SGSLSRKSLS-GNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFA 332
S S + + L+ GN +A L +++ L H+ T + I+F++F E F
Sbjct: 313 SNSFTTEELNNGNGVA-LFNTINSLFKSHILPTHFT-KSIQFILFRITQYQQE-LADSFL 369
Query: 333 TMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYC---NIL 389
+L DV + R+ A+ YL+S+++RA+ LS IV ++ L+ W +Y
Sbjct: 370 VLLIDVAFNPNEIVEKRLKAMQYLSSYIARAKNLSRHQIVFIVSYLMGWLNKYIIEREQE 429
Query: 390 GGDINPKAH---------------RVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP- 433
DI K ++FYS QA++Y+ CFR + P +
Sbjct: 430 TFDIENKQKQNSTSRQQTGGMERFKLFYSAFQALLYIFCFRHEQLRKDPSSSTTATTSSS 489
Query: 434 ----------------LETVLKHDLNPLKVCLPSVVSEFLQQSKAARL---FTVSETFVF 474
+ V+ NPLK C +VV F + + + +++ E
Sbjct: 490 SSSTSSSEWECDIDKFFQRVIIVKFNPLKFCDETVVYIFAKLATKLNVCYCYSIIEHNKR 549
Query: 475 NDLLESE----LSRAFGGLER------LDMFFPFDPCLLKKSDR 508
+L++ L A G ++ L+ +FPFDP +L K +
Sbjct: 550 ERMLQTNGSTVLPSAVGNFKQKQEFLDLEAYFPFDPLVLPKCKK 593
>gi|255723684|ref|XP_002546771.1| hypothetical protein CTRG_01076 [Candida tropicalis MYA-3404]
gi|240134662|gb|EER34216.1| hypothetical protein CTRG_01076 [Candida tropicalis MYA-3404]
Length = 455
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 8/113 (7%)
Query: 312 IEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFI 371
I+FV+F+ PE F +L DV + R+ A+ YL+S+++RA+ LS +
Sbjct: 345 IQFVLFHVTQYQPE-LADSFLVLLIDVAFNPTEILEKRLKAMQYLSSYIARAKGLSRHQV 403
Query: 372 VSLLKRLVDWCLEYC-----NILGGDINPKAHRVFYSGCQAIMYVLCFRMRSI 419
V ++ LV W ++ + G + + ++FY+ QA++Y+ CFR I
Sbjct: 404 VFIVSYLVGWLNKFILEREQEVESGGM--ERFKLFYAAFQALLYIFCFRYEII 454
>gi|448096805|ref|XP_004198521.1| Piso0_001896 [Millerozyma farinosa CBS 7064]
gi|359379943|emb|CCE82184.1| Piso0_001896 [Millerozyma farinosa CBS 7064]
Length = 674
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 107/263 (40%), Gaps = 59/263 (22%)
Query: 290 LLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTR 349
L ++L L H+ T + I+FV F+ PE + +L D+ + R
Sbjct: 372 LFNTLTSLFKSHILPTHFT-KSIQFVHFHISQYQPELMD-SYLVLLIDIAFNIDEILEKR 429
Query: 350 MSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEY-----CNILGGDINPKAH------ 398
+ A+ YL+S+++RA+ LS IV ++ L W +Y C +L H
Sbjct: 430 LKAMQYLSSYIARAKKLSKNQIVFVVSYLTGWLNKYVDERECEVLENKKERFRHKEMETR 489
Query: 399 --------RVFYSGCQAIMYVLCFRMRSIM-----------------DIPRLKSQLLLMP 433
++FY+ QA++Y+ CFR S+ +I + +++L+
Sbjct: 490 QSAGMERFKLFYAAFQALLYIFCFRHNSLFKEADAVYTEPSDSEWECEIDKFFQRMILV- 548
Query: 434 LETVLKHDLNPLKVCLPSVVSEFLQQSKAARL--------FTVSETFVFND---LLESEL 482
NPLK C +VV F + S + E + ND +L S
Sbjct: 549 -------KFNPLKYCDETVVFIFAKISTKLNVCYCYSILEHNKRERMLQNDTSSMLPSST 601
Query: 483 SRAFGGLERLDM--FFPFDPCLL 503
+ E LD+ +FPFDP +L
Sbjct: 602 TNFRQKQEFLDLEAYFPFDPLVL 624
>gi|281208611|gb|EFA82787.1| hypothetical protein PPL_04482 [Polysphondylium pallidum PN500]
Length = 521
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 97/214 (45%), Gaps = 22/214 (10%)
Query: 97 WNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVL 156
W+ D + +I+L N Y T+L + F P L + E+ ++
Sbjct: 52 WSRDDQSVGKFIEFVINLVTFNQSYAIDAFTLLGTAFEPYKQALANGTKVD-YEKWEKIS 110
Query: 157 SRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGEL 216
+VH +L I ++PL+ L I++Q+ P H H L++ ++++ L + +
Sbjct: 111 MKVHFSLNKIVSVLPLSSPSLADILIQKFP--HTIHP-LEVHHFFLKHVLLV--TRYCPS 165
Query: 217 VRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGS 276
+ S ++ A V+ L+ +D I ++I DD E++ +D E S S
Sbjct: 166 ISSKIIAAAVNTLVLIDTSITIEEIPGDD------ELQFDDFEGTGK----------SDS 209
Query: 277 LSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGR 310
+ + + A+ LD LM+L F++L++ G G+
Sbjct: 210 TNEQQEKNTINAQKLDGLMLLMFQYLDARFGKGK 243
>gi|17552532|ref|NP_497803.1| Protein C36E8.1 [Caenorhabditis elegans]
gi|1353129|sp|P48322.1|YPJ1_CAEEL RecName: Full=Uncharacterized protein C36E8.1
gi|3924707|emb|CAA84645.1| Protein C36E8.1 [Caenorhabditis elegans]
Length = 654
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 81/207 (39%), Gaps = 18/207 (8%)
Query: 310 RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMS--AVSYLASFLSRARFLS 367
+ + F+ Y C+L E + P R S A SYLA+FL+RA+++
Sbjct: 371 QYVSFIWLYFCSLSQEYEKKMLEHLWQVTIRMPRAPADARKSQGAASYLAAFLARAKYVK 430
Query: 368 PCFIVSLLKRLVDWCLEYCNILG---GDINP--KAHRVFYSGCQAIMYVLCFRMRSIMDI 422
+ L+ + W Y + G I P + H FYS QA V FR + +
Sbjct: 431 KSTAFTWLEEVYIWLRHYVDQFGSGSSQILPGLQRHGTFYSVSQAFFLVFAFRYKEFVKN 490
Query: 423 PRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESEL 482
+ + + V+ L PLK V F +++ +L + E+
Sbjct: 491 KDMLETIRRWGVGRVVHSPLEPLKYVSKPVARCFSAITRSLQLVYCNHIIPIE-----EV 545
Query: 483 SRAFGGLERLDMFFPFDPCLLKKSDRF 509
R F D FPFD LK+S +F
Sbjct: 546 QRPF------DDMFPFDCYHLKESSKF 566
>gi|410985185|ref|XP_003998904.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3 [Felis catus]
Length = 564
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 14/114 (12%)
Query: 405 CQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAAR 464
C + + CF ++ + + L E ++ LNPLK+CLPSVV+ F + +
Sbjct: 382 CLYFLKMFCFLIKGLTYLQSLN-------FERIVMSQLNPLKICLPSVVNFFAAITSKYQ 434
Query: 465 LFTVSETFVFNDLLESELSRAFGGLER-------LDMFFPFDPCLLKKSDRFAN 511
L N+ + R+ G + LD FFPFDPC+LK+S +F +
Sbjct: 435 LVFCYTIIERNNRQMLPVIRSTAGGDSVRTCTNPLDTFFPFDPCVLKRSKKFID 488
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 103/256 (40%), Gaps = 32/256 (12%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRA-LLETSLKALSGAVSYIDISHHESL 87
V E L + G+ +++ L + DPD + + L ++ Y+ E L
Sbjct: 56 VTEVLLKYKKGETNDFELLKNQLS-----DPDIKDDQIINWLLEFRSSIMYL-TKDFEQL 109
Query: 88 LVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDK----- 142
+ + + N V++ + +L ++ ++ CL+M+VS+F PP + +
Sbjct: 110 INILLRLQWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIVSHFVPPRVVIKEGDVDV 169
Query: 143 LKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYM 202
+ H AL+ I VP P L+PI+V++ P V L+ Y+
Sbjct: 170 SDSDDEDDNLPATFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLE---CYV 226
Query: 203 ENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAA 262
N L++ S +R +L V+++L+ LD+ DI ED EE A
Sbjct: 227 HNLLRI--SVYFPSLRHEILELVIEKLLKLDVNASRQDI--------------EDAEEVA 270
Query: 263 DDAEQVGDELPSGSLS 278
G + P G S
Sbjct: 271 AQTGG-GTDAPEGLFS 285
>gi|430812212|emb|CCJ30365.1| unnamed protein product [Pneumocystis jirovecii]
Length = 441
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 90/191 (47%), Gaps = 29/191 (15%)
Query: 77 SYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPP 136
S +D HH+ L+ + D + + + ++A+++ Y+ + MLV + T
Sbjct: 110 SKLDSKHHD-LIKDVLKTYWVKRDDEFVSVYIQFLGTIASAHSGYIPLIIQMLVQSIT-- 166
Query: 137 SYFLDKLKEPHGLE---RKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHE 193
LD E E + + R+H ALK I DLVP++ T L I+V P +K
Sbjct: 167 ---LDLDSEESFSEILITTNLIYDRIHLALKYILDLVPVSYTFLFSILVTEFP---HKSY 220
Query: 194 RLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEM 253
+ V Y++N L++ A +V +L ++D++I +D+EI ++
Sbjct: 221 KTSHQVTYLKNLLRILEYA--PVVSGQVLALIIDKIIQIDVEI---------------QI 263
Query: 254 ELEDVEEAADD 264
EL+D++E D+
Sbjct: 264 ELDDLDEEVDE 274
>gi|119575142|gb|EAW54755.1| hCG1786665, isoform CRA_f [Homo sapiens]
Length = 330
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 73/348 (20%), Positives = 129/348 (37%), Gaps = 86/348 (24%)
Query: 29 VREALTSVQSGDNDNY----NQLVAVMHLSGRLDPDNRA-LLETSLKALSGAVSYIDISH 83
V E L + G+ +++ NQL LDPD + + L ++ Y+
Sbjct: 56 VTEVLLKYKKGETNDFELLKNQL---------LDPDIKDDQIINWLLEFRSSIMYL-TKD 105
Query: 84 HESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKL 143
E L+ I + N V++ + +L ++ ++ CL+M+ S+F PP + +
Sbjct: 106 FEQLISIILRLPWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEG 165
Query: 144 KEPHGLERKHQV-----LSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMI 198
H AL+ I VP P L+PI+V++ P V L+
Sbjct: 166 DVDVSDSDDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLE-- 223
Query: 199 VVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDV 258
Y+ N L++ S +R +L ++++L+ LD+
Sbjct: 224 -CYVHNLLRI--SVYFPTLRHEILELIIEKLLKLDVNAS--------------------- 259
Query: 259 EEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFY 318
+ +DAE+ + G+ S + L AE EHL +
Sbjct: 260 RQGIEDAEETATQTCGGTDSTEGLFNMGFAEAF-------LEHL---------------W 297
Query: 319 ACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFL 366
DP N P + R +A +Y+ SFL+RA+F+
Sbjct: 298 KKLQDPSN------------------PAIIRQAAGNYIGSFLARAKFI 327
>gi|353238295|emb|CCA70246.1| related to RRN3-RNA polymerase I specific transcription factor
[Piriformospora indica DSM 11827]
Length = 854
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 45/168 (26%)
Query: 336 ADVFVSGL--------YPP---LTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLE 384
AD+F+ L PP LTR+++ +YL+SF+SRA C + +V C +
Sbjct: 505 ADIFLGSLLHNALVPQTPPIPMLTRIASAAYLSSFVSRAL----CIGKDDCRSVVIVCCQ 560
Query: 385 YCN--------ILGGDINP------KAH---RVFYSGCQAIMYVLCFRMRSIMD------ 421
+ + ++ G P AH VFY+ QAI + CFR R +++
Sbjct: 561 WADGHMEELEALMSGSSAPLDAATVNAHDELGVFYAVAQAIFLIFCFRWRDLLEQSTEDD 620
Query: 422 ------IPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAA 463
P+ K L ++ ++ LNPLK+C P+VV +F + S+ A
Sbjct: 621 PDEAEEAPK-KWIHELNVVQRLITSPLNPLKICSPNVVHQFSRVSEKA 667
>gi|344233955|gb|EGV65825.1| hypothetical protein CANTEDRAFT_118584 [Candida tenuis ATCC 10573]
Length = 661
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 100/236 (42%), Gaps = 43/236 (18%)
Query: 310 RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPC 369
+ I+F++F+ E F +L D+ + TR+ ++ YL+S+++RA+ LS
Sbjct: 373 KSIQFLLFHITQYQME-LSDSFLVLLIDITFNPSQILETRLKSMQYLSSYIARAKCLSKN 431
Query: 370 FIVSLLKRLVDWCLEYCNILGGDIN-----------PKAHRVFYSGCQAIMYVLCFRMRS 418
IV ++ LV W +Y +IN + ++FYS Q ++Y+ CFR +
Sbjct: 432 QIVFVVSYLVGWLNKYIEEREFEINLSNSNDKSVGGMERFKLFYSTFQGLLYIFCFRYKL 491
Query: 419 IMDIPRLKSQL-----LLMPLETVLKHDLNPLKVCLPSVVSEF---------------LQ 458
+ +K + + V+ NPLK +V F ++
Sbjct: 492 LQ--VEIKGDFEWEGEIDKFFQRVIITKFNPLKFIDETVCFIFANIATKLNVCYCYSIIE 549
Query: 459 QSKAARLFTVSETFVFNDLLESELSRAFGGLER------LDMFFPFDPCLLKKSDR 508
+K R+ S N+L L + G ++ L+ +FPFDP +L S +
Sbjct: 550 HNKRERMLHTSTDTKDNNL---SLPASIGNFKQKQEFLDLEGYFPFDPLVLPLSKK 602
>gi|328875303|gb|EGG23668.1| hypothetical protein DFA_05802 [Dictyostelium fasciculatum]
Length = 555
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 82/211 (38%), Gaps = 31/211 (14%)
Query: 97 WNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVL 156
W D ++ II+L N Y D C MLV F P + ++ +
Sbjct: 58 WTKDELSVNRFIDFIINLVTYNSAYADECFKMLVGAFEPYKQAIANGINVVDYKKWEMIA 117
Query: 157 SRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGEL 216
+VH I PL L + R P H H +++ Y +N L + +
Sbjct: 118 MKVHFLFNKIISTFPLTTPLLASTLAHRFP--HRVHS-VEIHHFYFKNALFV--TRYCPT 172
Query: 217 VRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGS 276
+ ++L + +D L+++D I D+I D ED++ ++ + G ++
Sbjct: 173 IALSILTSSIDTLVNIDSSISLDEIPDD-----------EDLQFNIEENKSEGAQM---- 217
Query: 277 LSRKSLSGNLIAELLDSLMVLTFEHLESCEG 307
A LD LM L FE+L +C G
Sbjct: 218 -----------AHKLDILMALMFEYLNACFG 237
>gi|367003667|ref|XP_003686567.1| hypothetical protein TPHA_0G02920 [Tetrapisispora phaffii CBS 4417]
gi|357524868|emb|CCE64133.1| hypothetical protein TPHA_0G02920 [Tetrapisispora phaffii CBS 4417]
Length = 642
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 99/262 (37%), Gaps = 60/262 (22%)
Query: 300 EHLESCEGTG-------------------RLIEFVMFYACALDPENCGLRFATMLADVFV 340
E +ES EG G + I+++MFY E F L D+
Sbjct: 358 EKIESGEGVGLFNKLTALFKSHVLPTYYTKSIQYIMFYISQQQNELMD-SFLVTLIDIAF 416
Query: 341 SGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWC-------LEYCNILGGDI 393
S T++ ++ YL S+++RA+ +S ++ + L W E + +GG
Sbjct: 417 SSNETSETKIKSLQYLGSYIARAKKVSKTQVIFVTSYLTSWLNRFVLEREEEVDQIGG-- 474
Query: 394 NPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVV 453
+ + FY+ QA+ Y+ CFR + D L + ++ NPLK C +V+
Sbjct: 475 -MERFKQFYATFQALCYMFCFRHSDLKDADGNWDCELDKFFQRMVISKFNPLKYCNENVM 533
Query: 454 SEF---LQQSKAARLFTVSE-----------------TFVFNDLLESELSRAFGG----- 488
F Q A F + E T N + + + S F
Sbjct: 534 MMFARITQHEGIAYCFGIIESNNNERLRGIMGRSSTPTTERNGVTDDKSSSNFTASTWSL 593
Query: 489 LER-----LDMFFPFDPCLLKK 505
+ R L +FPFDP LK+
Sbjct: 594 VTRQQFIDLQSYFPFDPLFLKE 615
>gi|114661533|ref|XP_001152385.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like, partial [Pan troglodytes]
Length = 105
Score = 52.0 bits (123), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 345 PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA------H 398
P + R +A +Y+ SFL+RA+F+ + S LV+W Y N D KA H
Sbjct: 20 PAIIRQAAGNYIGSFLARAKFIPLTTVKSCPDLLVNWLHIYLN--NQDSGTKAFCDVALH 77
Query: 399 RVFYSGCQAIMYVLCFRMRSIM 420
FYS CQA+ Y FR + ++
Sbjct: 78 GPFYSACQAVFYTFVFRHKQLL 99
>gi|403213789|emb|CCK68291.1| hypothetical protein KNAG_0A06300 [Kazachstania naganishii CBS
8797]
Length = 650
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 88/227 (38%), Gaps = 33/227 (14%)
Query: 310 RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPC 369
R ++++MF+ E F L D+ S ++ ++ YL S+++RA+ LS
Sbjct: 397 RSVQYIMFHVSQQQLELMD-SFLVTLIDISFSPNETVEKKIKSLQYLGSYIARAKKLSRT 455
Query: 370 FIVSLLKRLVDWCLEYCNILGGDINP----KAHRVFYSGCQAIMYVLCFRMRSIMDIPRL 425
I+ + L W Y ++N + + FY+ QA+ YV CFR D+
Sbjct: 456 QIIFVASYLTSWLNRYAIEREEEVNQPGGMERFKHFYAAFQALCYVFCFRRDMFRDLDGN 515
Query: 426 KSQLLLMPLETVLKHDLNPLKVCLPSVV---SEFLQQSKAARLFTVSETFVFNDLL---- 478
L + ++ NPLK C +V+ + Q A F++ E L
Sbjct: 516 WECELDKFFQRMIISKFNPLKYCNENVMLMFARITQHEDIAYCFSIIENNNHERLRGIVG 575
Query: 479 --------ESELSRAFGGLER-------------LDMFFPFDPCLLK 504
+E+S + G L +FP+DP LK
Sbjct: 576 KADLSKTGTAEISSSNGSASTPTWSLATRQQFIDLQSYFPYDPLFLK 622
>gi|297715320|ref|XP_002834033.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like, partial [Pongo abelii]
Length = 91
Score = 51.6 bits (122), Expect = 0.001, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 46/93 (49%), Gaps = 12/93 (12%)
Query: 378 LVDWCLEYCNILGGDINPKA------HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLL 431
LV+W Y N D KA H FYS CQA+ Y FR + ++ LK L
Sbjct: 2 LVNWLHIYFN--NQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLS-GNLKEGLRY 58
Query: 432 MP---LETVLKHDLNPLKVCLPSVVSEFLQQSK 461
+ E ++ LNPLK+CLPSVV+ F +K
Sbjct: 59 LQSLNFERIVMSQLNPLKICLPSVVNFFAAITK 91
>gi|324503530|gb|ADY41533.1| Unknown [Ascaris suum]
Length = 634
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 87/210 (41%), Gaps = 17/210 (8%)
Query: 312 IEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMS--AVSYLASFLSRARFLSPC 369
+ FV +C+ +PE + + + G P + + A Y+ +FLSRA +
Sbjct: 340 VSFVWLVSCSHEPEYMAEMLRWLWSLITRPGQSPNDWKKAQGAACYMGAFLSRAVAVDLS 399
Query: 370 FIVSLLKRLVDWCLEYCNILGGDINPKA-----HRVFYSGCQAIMYVLCFRMRSIMDIPR 424
+ ++R++ C Y N + N H FY+ CQA++ CFR + ++D
Sbjct: 400 MSIEWMERMMRLCRNYINEVVDRSNSATAGIIRHGTFYALCQALLLTFCFRYKELVDTNE 459
Query: 425 LKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSR 484
L++ + ++ L PL+ V F S++ +L N +L + +
Sbjct: 460 LEA-VRQWGFGHIVHSALEPLRFISRPVAQCFAIISRSLQLVYC------NHVLPTASAE 512
Query: 485 AFGGLERLDMFFPFDPCLLKKSDRFANATL 514
E L FPFD LL +S F L
Sbjct: 513 EKLPFEPL---FPFDSFLLTQSSIFVRPLL 539
>gi|308490973|ref|XP_003107678.1| hypothetical protein CRE_13367 [Caenorhabditis remanei]
gi|308250547|gb|EFO94499.1| hypothetical protein CRE_13367 [Caenorhabditis remanei]
Length = 653
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 99/256 (38%), Gaps = 22/256 (8%)
Query: 264 DAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTG---RLIEFVMFYAC 320
++E+ G+++ L+ SG+ + D L E LES + I FV Y
Sbjct: 322 ESEEKGEKIDEKWLTSFKFSGDKVL-AADKLFDTFLEVLESTMLNATHVQYISFVWLYFG 380
Query: 321 ALDPENCGLRFATMLADVFVSGLYPPLTRMS--AVSYLASFLSRARFLSPCFIVSLLKRL 378
+L E + P R S A SYLA+FL+RA+++ + L+ +
Sbjct: 381 SLKAEYEQKVLEHLWQVTIRMPRAPADARKSQGAASYLAAFLARAKYVKKNTAFTWLEEI 440
Query: 379 VDWCLEYCNILG---GDINP--KAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP 433
W Y + G I P + H FY+ QA V FR + + + +
Sbjct: 441 YTWLRHYVDQFGSGSSQILPGLQRHGTFYAVSQAFFLVFAFRYKEFVKDQEMLETIRRWG 500
Query: 434 LETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLD 493
+ V+ L PL+ V F +++ +L + E+ R F D
Sbjct: 501 VGRVVHSPLEPLRFVSKPVARCFSAITRSLQLVYCNHVIPIE-----EVQRPF------D 549
Query: 494 MFFPFDPCLLKKSDRF 509
FPFD LK S +F
Sbjct: 550 DMFPFDGFHLKVSSQF 565
>gi|354495510|ref|XP_003509873.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like [Cricetulus griseus]
Length = 482
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 105/248 (42%), Gaps = 41/248 (16%)
Query: 85 ESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLK 144
E L+ I + V++ + +L ++ ++ CL+M+ S+F PP + +
Sbjct: 188 EQLINIILRLPWLKRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKE-- 245
Query: 145 EPHGLERKHQV---------LSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERL 195
G++ H AL+ I VP P L+PI+V + P V L
Sbjct: 246 --GGIDVSDSDDEDDDLPSNFDTCHRALQIITRYVPSTPWFLMPILVDKFPFVRKSERTL 303
Query: 196 KMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDI----------LHDD 245
+ Y+ N L++ S +R +L ++++L+ LD+ + DI D
Sbjct: 304 E---CYVHNLLRI--SVYFPTLRREILELIIEKLLKLDVSVSRQDIEDAEEAAAQTCGTD 358
Query: 246 FSKGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLES- 304
++G+F M+ E+ + E+ D L R S + IAE LD L+ L ++E
Sbjct: 359 ATEGLFNMD----EDEDTEPERKAD------LDRTSQMAHPIAERLDILLSLLLSYIEDV 408
Query: 305 --CEGTGR 310
+G G+
Sbjct: 409 CRVDGNGK 416
>gi|448514488|ref|XP_003867127.1| Rrn3 protein [Candida orthopsilosis Co 90-125]
gi|380351465|emb|CCG21689.1| Rrn3 protein [Candida orthopsilosis Co 90-125]
Length = 651
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 111/275 (40%), Gaps = 47/275 (17%)
Query: 274 SGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFAT 333
S S + + L+ L +++ L H+ T + I+F++F E F
Sbjct: 309 SNSFTTEELNNGNGVTLFNTINSLFKSHILPTHFT-KSIQFILFRITQYQQE-LADSFLV 366
Query: 334 MLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYC---NILG 390
+L DV + R+ A+ Y++S+++RA+ LS IV ++ L+ W +Y
Sbjct: 367 LLIDVAFNPNEIVEKRLKAMQYISSYIARAKNLSRHQIVFIVSYLMGWLNKYIIEREQET 426
Query: 391 GDINPKAH-------------RVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP---- 433
DI K ++FYS QA++Y+ CFR + P +
Sbjct: 427 FDIENKQKSGSQQQTGGMERFKLFYSAFQALLYIFCFRHEQLRKDPSQSTSTSTSTTSSS 486
Query: 434 -----------LETVLKHDLNPLKVCLPSVVSEFLQQSKAARL---FTVSETFVFNDLLE 479
+ V+ NPLK C +VV F + + + +++ E +L+
Sbjct: 487 SSEWECDIDKFFQRVIIVKFNPLKFCDETVVYIFAKLATKLNVCYCYSIIEHNKRERMLQ 546
Query: 480 SELS-----RAFGGLER------LDMFFPFDPCLL 503
+ S A G ++ L+ +FPFDP +L
Sbjct: 547 TNGSIVLPPSAVGNFKQKQEFLDLEAYFPFDPLVL 581
>gi|393215982|gb|EJD01473.1| RNA polymerase I-specific transcription initiation factor RRN3
[Fomitiporia mediterranea MF3/22]
Length = 769
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 106/253 (41%), Gaps = 54/253 (21%)
Query: 309 GRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSP 368
R +F++F+ +LD + T+++ + P +TR +A SY+AS++SRA F++
Sbjct: 436 SRYTQFLIFWYSSLDTQFRDRFLGTIVSAALLEPSQPVVTRAAAASYVASYVSRAAFVAR 495
Query: 369 ----------C-FIVSLLKRLVDWCLEYCNILGGDI------NPKAHRVFYSGCQAIMYV 411
C F+ + L + + N + + H VFY+ QA+ +
Sbjct: 496 GETQMVVRVLCQFLETHLDEFEAYAKQAANARSSGYEVLNQQSAEQHAVFYAAAQAMFLI 555
Query: 412 LCFRMRSIM-------DIPRLK---------SQLLLMP----LETVLKHDLNPLKVCLPS 451
CFR R + DI + + MP ++ V+ LNPLKVC +
Sbjct: 556 FCFRWRDLTQRDENDADIEEFEDVATINGGVAHRAWMPELKAMQRVVNSALNPLKVCSSN 615
Query: 452 VVSEF---------------LQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFF 496
VV +F L+ ++ + + S+ +D + ++F L FF
Sbjct: 616 VVQQFARVAQRVGFIYCFSILEANRRSEYASDSKNVSASDSNPALWVQSFDA--DLTTFF 673
Query: 497 PFDPCLLKKSDRF 509
PFDP L +S +
Sbjct: 674 PFDPFKLSRSSAY 686
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 100/228 (43%), Gaps = 23/228 (10%)
Query: 22 DLELVYHVREALTSVQSGDNDNYNQLV-----AVMHLSGRL-DPDNRALLETSLKALSGA 75
D+ L + + AL G N++Y+ LV + +G+ ++ L L AL+
Sbjct: 54 DMYLAF-IDNALNQKARGINEHYDDLVRQFSPTSLSAAGQAPQSADQQQLRGYLTALTHV 112
Query: 76 VSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTP 135
VS +D +H SL+ +I M D + + L ++ +Y+ L + T
Sbjct: 113 VSKLDRAHF-SLVDAIVSMPWTTMDSAFVKTYISFVGMLVSARPEYLTLVLERAAQSLT- 170
Query: 136 PSYFLDKLKEPHGLER-------KHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTV 188
Y+ + G + V RVH+ + + +L+P P+ L P++ + P
Sbjct: 171 --YYSARKALDSGFAESSSSPLTRRIVYDRVHSLVAQLLELIPTLPSALYPLLARNFP-- 226
Query: 189 HNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEI 236
+K +R V Y+ N L+L S EL +L VVDR + +D+EI
Sbjct: 227 -HKRQREAEHVTYIRNLLRL-SDYCPELW-DRILGLVVDRTLQIDVEI 271
>gi|440801895|gb|ELR22899.1| hypothetical protein ACA1_398450 [Acanthamoeba castellanii str.
Neff]
Length = 371
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 431 LMPLETVLKHDLNPLKVCLPSVVSEFLQQSK--AARLFTVSETFVFNDLLESELSRAFGG 488
L+ L+ +++ LNPL++C +VV+EFL+ + L + N + FG
Sbjct: 156 LLELDAIIQSRLNPLRLCASTVVTEFLKVAADLCGLLPSARAVLERNKRVVLATKSVFGN 215
Query: 489 LERLDMFFPFDPCLLKKSDRFANA 512
+LD FFPFDP LL+ S + +A
Sbjct: 216 ANQLDSFFPFDPYLLRHSSKHISA 239
Score = 42.4 bits (98), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 78/183 (42%), Gaps = 32/183 (17%)
Query: 145 EPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIV--VYM 202
E + L Q+ +H + I DLVP + + LL I+ P H+RL + Y+
Sbjct: 16 EKYDLLATEQIAKHLHQTIALILDLVPSSTSVLLDILEHNFP-----HKRLDVETHRCYL 70
Query: 203 ENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAA 262
N L++ S E ++S++L + ++ +D+EI + + +D + F+ME+ D AA
Sbjct: 71 SNILQVASYC--EALKSSILALAIKNILQIDVEIKIESLDEEDEDEIQFDMEITD---AA 125
Query: 263 DDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTG-RLIEFVMFYACA 321
D G + L+D L F + E T RL+E
Sbjct: 126 D-------------------MGTKLDALMDILFTFIFRESQRSESTASRLLELDAIIQSR 166
Query: 322 LDP 324
L+P
Sbjct: 167 LNP 169
>gi|84996413|ref|XP_952928.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65303925|emb|CAI76304.1| hypothetical protein, conserved [Theileria annulata]
Length = 534
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 100/248 (40%), Gaps = 55/248 (22%)
Query: 310 RLIEFVMFYACALDPENCGLR-FATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSP 368
+ ++F+ F+ + D + LR F L + + R +A SY++S + RA+++
Sbjct: 126 KYVQFIYFFIASFDVK--WLRMFLQRLFGIVYDNSQHVIKRRTAASYISSLICRAKYVPQ 183
Query: 369 CFIVSLLK-----------------------------RLVDWCLEYCN-------ILGGD 392
FI S L R + + I G
Sbjct: 184 NFITSTLTHFFTLLSPFNQFISKSGDSNLITNTTGIDRTISGTVSTNTSSTVNGIITNGK 243
Query: 393 INPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP-----LETVLKHDLNPLKV 447
+ K +FYS Q I+Y++C+ I R +S + + L L L+PL
Sbjct: 244 VVTKKLSLFYSILQDILYIICYHTDV---ISRSESCVSFIENSETGLMAYLTSYLDPLAY 300
Query: 448 CLPSVVSEFLQQSK------AARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPC 501
C SV+SE ++ + F S++++ ++ ESE + + +D FFPFDP
Sbjct: 301 CKRSVISEAIKSTSYYSNLACLHKFLKSKSYLLDNSKESEQFK-WSFYSPIDSFFPFDPY 359
Query: 502 LLKKSDRF 509
LL S RF
Sbjct: 360 LLHHS-RF 366
>gi|395747522|ref|XP_003778617.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like, partial [Pongo abelii]
Length = 332
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 97/244 (39%), Gaps = 39/244 (15%)
Query: 29 VREALTSVQSGDNDNY----NQLVAVMHLSGRLDPDNRA-LLETSLKALSGAVSYIDISH 83
V E L + G+ +++ NQL LDPD + + L +V Y+
Sbjct: 56 VTEVLLKYKKGETNDFELLKNQL---------LDPDIKDDQIINWLLEFRSSVMYL-TKD 105
Query: 84 HESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKL 143
E L+ I + N V++ + +L ++ ++ CL M+ S+F PP + +
Sbjct: 106 FEQLISIILRLPWLNRSQTVVEEYLAFLANLVSAQTVFLRPCLGMIASHFVPPRVIIKEG 165
Query: 144 KEPHGLERKHQV-----LSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMI 198
H AL+ I VP P L+PI+V++ P V L+
Sbjct: 166 DVDVSDSDDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLE-- 223
Query: 199 VVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDV 258
Y+ N L++ S +R +L ++++L+ LD+ DI ED
Sbjct: 224 -CYVHNLLRI--SVYFPTLRHEILELIIEKLLKLDVNASRQDI--------------EDA 266
Query: 259 EEAA 262
EE A
Sbjct: 267 EETA 270
>gi|50304297|ref|XP_452098.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641230|emb|CAH02491.1| KLLA0B12738p [Kluyveromyces lactis]
Length = 658
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 118/292 (40%), Gaps = 31/292 (10%)
Query: 235 EIGWDDILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSL 294
E+ D++ + D S I E+ DD V S +L+ +SL + ++L
Sbjct: 339 EMDGDEVYYVDLSHNIKELS-----SKLDDILAVITSKLSCALTPESLEDGDGVTIFNTL 393
Query: 295 MVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVS 354
L H+ T R ++++MF+ PE F L D+ S ++ ++
Sbjct: 394 TSLFKTHILPTYYT-RSVQYLMFHVSQQQPELMDA-FLVTLIDISFSPNETMEKKIKSLQ 451
Query: 355 YLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA----HRVFYSGCQAIMY 410
Y+ SF++RA+ L+ IV + L W Y +++ + + FY+ QAI Y
Sbjct: 452 YIGSFIARAKKLTRTQIVFVTSYLTSWLNRYVLEREEEVDQQGGMERFKHFYAVFQAICY 511
Query: 411 VLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVV---SEFLQQSKAARLFT 467
+ CFR + D L + ++ NPLK C +V+ ++ Q F+
Sbjct: 512 IFCFRHSILRDGNDAWECDLDKFFQRMVISKFNPLKYCNGNVMMMFAKIAQNEGVVYCFS 571
Query: 468 VSETFVFNDLLE-----------SELSRAFGGLER-----LDMFFPFDPCLL 503
+ E N+ L S +S + R L +FP+DP L
Sbjct: 572 IIEN-NNNERLRGITGKSAESGGSSISGTWSLATRQQFIDLQSYFPYDPLFL 622
>gi|395747520|ref|XP_002826198.2| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like, partial [Pongo abelii]
Length = 268
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 75/183 (40%), Gaps = 24/183 (13%)
Query: 85 ESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLK 144
E L+ I + N V++ + +L ++ ++ CL+M+ S+F PP + +
Sbjct: 42 EQLISIILRLPWLNRSQTVVEEYLAFLANLVSAQTVFLRPCLSMIASHFVPPRVIIKEGD 101
Query: 145 EPHGLERKHQV-----LSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIV 199
H AL+ I VP P L+PI+V++ P V L+
Sbjct: 102 VDVSDSDDEDDNLPANFGTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLE--- 158
Query: 200 VYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVE 259
Y+ N L++ S +R +L ++++L+ LD+ DI ED E
Sbjct: 159 CYVHNLLRI--SVYFPTLRHEILELIIEKLLKLDVNASRQDI--------------EDAE 202
Query: 260 EAA 262
E A
Sbjct: 203 ETA 205
>gi|254585091|ref|XP_002498113.1| ZYRO0G02552p [Zygosaccharomyces rouxii]
gi|238941007|emb|CAR29180.1| ZYRO0G02552p [Zygosaccharomyces rouxii]
Length = 610
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 91/228 (39%), Gaps = 33/228 (14%)
Query: 310 RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPC 369
+ I+++MF+ E F L D+ S ++ ++ YL S+++RA+ LS
Sbjct: 364 KSIQYIMFHISQQQAELMDA-FLVTLIDISFSPTETSEKKIKSLQYLGSYIARAKKLSRT 422
Query: 370 FIVSLLKRLVDWCLEYCNILGGDINP----KAHRVFYSGCQAIMYVLCFRMRSIMDIP-R 424
I+ + L W Y +++ + + FY+ QA+ Y+ CFR + D
Sbjct: 423 QIIFVASYLTSWLNRYVLEREEEVDQPGGMERFKHFYAAFQALCYIFCFRYQMFRDPDGS 482
Query: 425 LKSQL-LLMPLETVLKHDLNPLKVCLPSVV---SEFLQQSKAARLFTVSETFVFNDLLES 480
+ +L L P + K NPLK C +V+ + Q A F++ E N+ L
Sbjct: 483 WECELDKLFPRMVITK--FNPLKYCNENVMLMFARIAQHEDVAFCFSIIEN-NNNERLRG 539
Query: 481 ELSRAFGGLER--------------------LDMFFPFDPCLLKKSDR 508
+ R + L +FP+DP LK R
Sbjct: 540 IIGRGDSNQKSSSQPVAASTWSLATRQQFIDLQSYFPYDPLFLKHYKR 587
>gi|148664956|gb|EDK97372.1| mCG129813 [Mus musculus]
Length = 367
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 89/217 (41%), Gaps = 35/217 (16%)
Query: 85 ESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDK-- 142
E L+ I + N V++ + +L ++ ++ CL+M+ S+F PP + +
Sbjct: 105 EQLINIILRLPWLNRSQRVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIVKEGG 164
Query: 143 --------------LKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTV 188
L + H AL+ I VP P L+PI+V++ P V
Sbjct: 165 IDVSDSDDEDDSEYDLRTWVLHDLPAIFDTCHRALQIITRYVPSTPWFLMPILVEKFPFV 224
Query: 189 HNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILH----- 243
L+ Y+ N L++ S +R +L V+++L+ LD+ + DI
Sbjct: 225 RKSERTLE---CYVHNLLRI--SLYFPTLRREILELVIEKLLKLDVSVSRQDIEDAEEKA 279
Query: 244 ------DDFSKGIFEMELEDVEEAADDAEQVGDELPS 274
D ++G+F M D +E D ++ E P+
Sbjct: 280 AQTCGGTDTTEGLFNM---DEDEDTDPEKKADQEQPN 313
>gi|123459793|ref|XP_001316622.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121899334|gb|EAY04399.1| hypothetical protein TVAG_416970 [Trichomonas vaginalis G3]
Length = 479
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 37/206 (17%)
Query: 311 LIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCF 370
+++F+ F A + EN +LA +F + TR +A Y ++ ++RA+++ F
Sbjct: 254 VVQFIYFMASSFSSENYQTFVGFLLAKIFNENV-NKRTRGNAAFYASTLVARAKYIDDQF 312
Query: 371 IVSLLKRLVDWCLEYCNILGGDI------NPKAHRVFYSGCQAIMYVLCFRMRSI--MDI 422
+L + ++ Y N + + N + H V+Y Q Y+ C+R M+I
Sbjct: 313 ATFVLDYVSNFAECYLNHIKQNSPQFLTRNIQVHAVYYYALQCFAYIYCWRHDGFEKMEI 372
Query: 423 ---PRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLE 479
R K LL ++L L P+ F F L++
Sbjct: 373 DVESRWKVSLL-------FNNELEGLSAIDPNTAVMF-------------SNF---GLID 409
Query: 480 SELSRAFGGLERLDMFFPFDPCLLKK 505
E ++ +ER+ ++FP+DPC L++
Sbjct: 410 YEPDQSV--IERIQVWFPYDPCPLEE 433
>gi|406694432|gb|EKC97759.1| RNA polymerase I transcription factor [Trichosporon asahii var.
asahii CBS 8904]
Length = 813
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 14/128 (10%)
Query: 349 RMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKAHRVFYSGCQAI 408
R++A Y+ S + RARF+S +++ L+ + + N +FY+ CQA
Sbjct: 506 RVAATVYIGSLVCRARFVSDEQARTVMGYLLAYVDGKLHSARAKKNDPELPLFYAVCQAA 565
Query: 409 MYVLCFRMRSI-----------MDIPRLKSQLLLMP---LETVLKHDLNPLKVCLPSVVS 454
M + CFR R+ MD+ + + L+ + +LNPL C P++VS
Sbjct: 566 MLIFCFRWRAFTNQDDMEVTGEMDMDEAQGGQWIADLDVLQRAITSELNPLLGCNPNIVS 625
Query: 455 EFLQQSKA 462
F + + A
Sbjct: 626 TFAKVANA 633
>gi|194696792|gb|ACF82480.1| unknown [Zea mays]
Length = 74
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 37/50 (74%)
Query: 211 SAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEE 260
+ + +++ S+LL VV L +LD+ I W+DIL D+ +KGIF+MELED+ E
Sbjct: 13 AVVWDIIGSSLLEKVVYLLTELDVNITWEDILQDEHNKGIFDMELEDLAE 62
>gi|363749595|ref|XP_003645015.1| hypothetical protein Ecym_2473 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888648|gb|AET38198.1| Hypothetical protein Ecym_2473 [Eremothecium cymbalariae
DBVPG#7215]
Length = 648
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 92/448 (20%), Positives = 171/448 (38%), Gaps = 86/448 (19%)
Query: 69 LKALSGAVSYIDISHHESLLVSIFGM-SMWNYDPDVMDALKGLIISLAASNGKYVDSCLT 127
L+ LS ++ +D ++ +I W+ P + + + L +S K+
Sbjct: 105 LEVLSNNINKLDTKRGVPIIRAIINFEKWWSLPPFTLSSYVFFLQILCSSMPKWWQDVSM 164
Query: 128 MLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPT 187
+L+SNF P Q + H L+ +P + + V + P
Sbjct: 165 ILISNFKLPV----------------QKTIKHHEMLRYFIKAIPSSTNFIDSYVAKYFP- 207
Query: 188 VHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFS 247
NK++ K +V ++ N L L + R V++++I +D+E+ + DD
Sbjct: 208 --NKNDSKKNLVNFISNVLTL--TEYCPEFRFHAWSMVIEKIISVDVELQNELDELDDDI 263
Query: 248 KGIFEMELEDVEEAADDA--------------------------------EQV-GDELPS 274
+ + ELED E+ D++ E + GDE +
Sbjct: 264 EDDIDNELEDDEDNYDESDLNSNSEANNEVGDEDGDGDEDEEEDDDDSENENIDGDEEYN 323
Query: 275 GSLSR--KSLSGNL--IAELLDSLM--VLTFEHLESCEGTG------------------- 309
+++R K LSG L I L+ + + LT E LE+ +
Sbjct: 324 VNVTRNIKDLSGKLDTILTLITTRLSNALTPESLENGDYISTFNTLISLFKSHILPTYYT 383
Query: 310 RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPC 369
R ++++MF+ E F L D+ S ++ ++ Y+ SF++RA+ L+
Sbjct: 384 RSVQYLMFHVSQQQTELMDA-FLVTLIDIAFSPNETIEKKIKSLQYIGSFIARAKKLTHT 442
Query: 370 FIVSLLKRLVDWCLEYCNILGGDINPKA----HRVFYSGCQAIMYVLCFRMRSIMDIPRL 425
IV + L+ W Y ++ + FY+ Q++ Y+ CFR D
Sbjct: 443 QIVFVASYLISWLHRYVLEREEEVEQPGGMDRFKHFYAAFQSLCYIFCFRHSIFRDGNSW 502
Query: 426 KSQLLLMPLETVLKHDLNPLKVCLPSVV 453
+ + V+ NPLK C +V+
Sbjct: 503 ECSIDKFFQRMVISK-FNPLKFCNENVM 529
>gi|401884874|gb|EJT49012.1| RNA polymerase I transcription factor [Trichosporon asahii var.
asahii CBS 2479]
Length = 813
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 14/128 (10%)
Query: 349 RMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKAHRVFYSGCQAI 408
R++A Y+ S + RARF+S +++ L+ + + N +FY+ CQA
Sbjct: 506 RVAATVYIGSLVCRARFVSDEQARTVMGYLLAYVDGKLHSARAKKNDPELPLFYAVCQAA 565
Query: 409 MYVLCFRMRSI-----------MDIPRLKSQLLLMP---LETVLKHDLNPLKVCLPSVVS 454
M + CFR R+ MD+ + + L+ + +LNPL C P++VS
Sbjct: 566 MLIFCFRWRAFTNQDDMEVTGEMDMDEAQGGQWIADLDVLQRAITSELNPLLGCNPNIVS 625
Query: 455 EFLQQSKA 462
F + + A
Sbjct: 626 TFAKVANA 633
>gi|365991487|ref|XP_003672572.1| hypothetical protein NDAI_0K01380 [Naumovozyma dairenensis CBS 421]
gi|343771348|emb|CCD27329.1| hypothetical protein NDAI_0K01380 [Naumovozyma dairenensis CBS 421]
Length = 534
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 101/265 (38%), Gaps = 32/265 (12%)
Query: 274 SGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFAT 333
S +L+ +SL L ++L L H+ T R I+++MF+ E F
Sbjct: 249 SNALTPESLETGDGVALFNTLTTLFKTHVLPTYYT-RSIQYIMFHISQQQLELMD-SFLV 306
Query: 334 MLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDI 393
L D+ S ++ ++ YL S+++RA+ LS IV + L W Y ++
Sbjct: 307 TLIDIAFSPNEAAEKKIKSLQYLGSYIARAKKLSRTQIVFVASYLTSWLNRYVIEREEEV 366
Query: 394 NP----KAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCL 449
+ + + FY+ Q++ Y+ CFR D L + + NPLK C
Sbjct: 367 DQPGGMERFKQFYAAFQSLCYIFCFRHNLFRDCDGEWECELDKFFQRTIISKFNPLKYCN 426
Query: 450 PSVV---SEFLQQSKAARLFTVSET----------------------FVFNDLLESELSR 484
+V+ + Q A F++ E FV + S S
Sbjct: 427 ENVMLMFARIAQHEDVAYCFSIIENNNNERLRGIIGKVDTSKRDTSDFVKVGTVSSTWSL 486
Query: 485 AF-GGLERLDMFFPFDPCLLKKSDR 508
A L +FP+DP L+ R
Sbjct: 487 ATRQQFIDLQSYFPYDPLFLRNYKR 511
>gi|270014376|gb|EFA10824.1| hypothetical protein TcasGA2_TC030743, partial [Tribolium
castaneum]
Length = 530
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 105/514 (20%), Positives = 203/514 (39%), Gaps = 85/514 (16%)
Query: 36 VQSGDNDNYNQLVAVMHLSGRLDPDNRALLETSLKALSGAVSYIDISHHESLLVSIFGMS 95
++ G+ +Y LV ++ + D D +LL+ + + +S + + + ++ +
Sbjct: 3 IKHGNAKDYENLVCLIRDAELFDDDISSLLKEATECISIMKQELRL-----FVEALLSVD 57
Query: 96 MWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQV 155
+ +V+ + I +L A++ + D + LV+ F PP L + +G K +
Sbjct: 58 WIERNENVVKEYQSFIANLVAAHNYHADFVINKLVTLFFPP---LTDPEWENGTPSKTDI 114
Query: 156 L--SRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAM 213
L VH+ L + VPL L+ ++ P + NK + Y++N L +
Sbjct: 115 LKCQHVHSLLCELLRTVPLCNELLIHALIDHFPYM-NKSTHIHE--YYIQNLLWV--ICY 169
Query: 214 GELVRSTLLMAVVDRLIDLDME--------IGWDDILHDDFSKGIFEMELEDVEEAADDA 265
+R +L + +LI +D+ + ++I D SK + L+ V A
Sbjct: 170 QPTLRPNILHLIFSKLIIMDVSAPREEIAKLEEEEIFMMDESKTNTTINLDCVHSMAHTL 229
Query: 266 EQVGDELPSGSLSR------KSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYA 319
+ D++ + S L+ L ++ + + + T ++FVMF
Sbjct: 230 DVCLDKVFNYIYSECHEPGTNDLNWGKTKSLYQDILTVFDQSILPTYNTHH-VQFVMFVL 288
Query: 320 CALDPENCGLRFATMLADVFVSGLYPPLT--------RMSAVSYLASFLSRARFLSPCFI 371
C+ F T L + F + L+ + R +AV+Y+ SF++RA F
Sbjct: 289 CS---------FKTTLTEAFFNYLWKKVCNPNVASVIRQAAVNYIVSFIARATFH----- 334
Query: 372 VSLLKRLVDWCLEYCNILGGDINPKAHRVFYSGCQAIMYV-----LCFRMRSIMD----- 421
+E G ++P +R +SG + LC + S+
Sbjct: 335 -----------VEGDFATNGRMDPLVYR--HSGRPRVRQFGPKAPLCL-LHSVSSPLLCD 380
Query: 422 -IPR--LKSQLLLMPLETVLKHDLNPLKVCLPSVVSEF---LQQSKAARLFTVSETFVFN 475
+P + L ++ LNPL+VC P+VV F ++ + A +++ E N
Sbjct: 381 FVPAQGFSQHKKNLNLAKIVTSRLNPLRVCQPAVVQNFAAITRKYQLAYCYSIIEHNSRN 440
Query: 476 DL---LESELSRAFGGLERLDMFFPFDPCLLKKS 506
L E L+ +PFDP +L +S
Sbjct: 441 TLPTVYRDEKGFVTVSSNVLEACYPFDPFVLSRS 474
>gi|444323349|ref|XP_004182315.1| hypothetical protein TBLA_0I01360 [Tetrapisispora blattae CBS 6284]
gi|387515362|emb|CCH62796.1| hypothetical protein TBLA_0I01360 [Tetrapisispora blattae CBS 6284]
Length = 660
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 113/286 (39%), Gaps = 51/286 (17%)
Query: 265 AEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDP 324
+ ++G+EL +L +G ++ + ++L L H+ S T + I+++MF+ L
Sbjct: 363 STRLGEELKPENLE----NGEGVS-IFNTLTTLFKTHVLSTYYT-KSIQYIMFHISQLQS 416
Query: 325 ENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLE 384
E F L D+ S ++ A+ YL S+++RA+ LS I+ + L W
Sbjct: 417 ELMD-SFLVSLIDISFSPNETSEKKVKALQYLGSYIARAKKLSRTQIIFVASYLTSWLNR 475
Query: 385 YC-------------NILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLL 431
+ + GG ++ H FY+ Q++ Y+ CFR D + + L
Sbjct: 476 FVLEREYEVDMIANGDGSGGGMDRFKH--FYAVFQSLCYMFCFRHELFKDQVTGQWECEL 533
Query: 432 MP-LETVLKHDLNPLKVCLPSVV---SEFLQQSKAARLFTVSETFVFNDLLESELSRAFG 487
+ ++ NPLK C +V+ + Q A F++ E N+ L L +
Sbjct: 534 DKFFQRLIVSKFNPLKYCNENVMLMFARITQHEGIAYCFSIIENNS-NERLRGILGKPLD 592
Query: 488 GLE------------------------RLDMFFPFDPCLLKKSDRF 509
+ L +FP+DP LK F
Sbjct: 593 NTDGKSATNNTTVVGTTWSIVTRQQFIDLQSYFPYDPLFLKNYKNF 638
>gi|75775196|gb|AAI04661.1| RRN3 protein [Homo sapiens]
Length = 305
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 97/244 (39%), Gaps = 39/244 (15%)
Query: 29 VREALTSVQSGDNDNY----NQLVAVMHLSGRLDPDNRA-LLETSLKALSGAVSYIDISH 83
V E L + G+ +++ NQL LDPD + + L ++ Y+
Sbjct: 56 VTEVLLKYKKGETNDFELLKNQL---------LDPDIKDDQIINWLLEFRSSIMYL-TKD 105
Query: 84 HESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKL 143
E L+ I + N V++ + +L ++ ++ CL+M+ S+F PP + +
Sbjct: 106 FEQLISIILRLPWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEG 165
Query: 144 KEPHGLERKHQV-----LSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMI 198
H AL+ I VP P L+PI+V++ P V L+
Sbjct: 166 DVDVSDSDDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLE-- 223
Query: 199 VVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDV 258
Y+ N L++ S +R +L ++++L+ LD+ I ED
Sbjct: 224 -CYVHNLLRI--SVYFPTLRHEILELIIEKLLKLDVNASRQGI--------------EDA 266
Query: 259 EEAA 262
EE A
Sbjct: 267 EETA 270
>gi|395756242|ref|XP_003780097.1| PREDICTED: RNA polymerase I-specific transcription initiation
factor RRN3-like, partial [Pongo abelii]
Length = 171
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 10/154 (6%)
Query: 85 ESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLK 144
E L+ I + N V++ + +L ++ ++ CL+M+ S+F PP + +
Sbjct: 23 EQLISIILRLPWLNRSQTVVEEYLAFLANLVSAQTVFLRPCLSMIASHFVPPRVIIKEGD 82
Query: 145 EPHGLERKHQV-----LSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIV 199
H AL+ I VP P L+PI+V++ P V L+
Sbjct: 83 VDVSDSDDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLE--- 139
Query: 200 VYMENTLKLESSAMGELVRSTLLMAVVDRLIDLD 233
Y+ N L++ S +R +L ++++L+ LD
Sbjct: 140 CYVHNLLRI--SVYFPTLRHEILELIIEKLLKLD 171
>gi|71028500|ref|XP_763893.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350847|gb|EAN31610.1| hypothetical protein TP04_0258 [Theileria parva]
Length = 971
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 96/265 (36%), Gaps = 71/265 (26%)
Query: 310 RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPP----LTRMSAVSYLASFLSRARF 365
+ ++F+ FY + D ++F M + +Y + R +A SY++S + RA F
Sbjct: 563 KYVQFIYFYVTSFD-----VKFLKMFLQRLFTIVYDNAQHVIKRRTAASYISSLICRANF 617
Query: 366 LSPCFIVSLLKRLV------DWCLEYCNILGGDI------NPKAHRV------------- 400
+ FI+S L + + C+I I +H V
Sbjct: 618 VPHHFIISTLTHFFTLLSPFNQFIHNCHIANSTIVKSTIVKGNSHSVKSNSRGNSRGISW 677
Query: 401 ------------------------------FYSGCQAIMYVLCFRMRSIMDIPRLKS--Q 428
FYS Q I+Y++C+ + S Q
Sbjct: 678 VNTVKSNSGVNSKTIGVHLNAVGVTKKLSLFYSILQDILYIICYHTGVVSGSETCVSFIQ 737
Query: 429 LLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVF--NDLLESELSRAF 486
L L L+PL C SV+S+ ++ + F+ N LL+++ S F
Sbjct: 738 NTETGLMAYLTSYLDPLSYCKTSVISQAIKSTSHFSNLACLNEFLRSKNYLLDTKESEHF 797
Query: 487 GG--LERLDMFFPFDPCLLKKSDRF 509
+D FFPFDP LL S RF
Sbjct: 798 KWSFYSPIDSFFPFDPYLLHHS-RF 821
>gi|361132015|gb|EHL03630.1| putative RNA polymerase I-specific transcription initiation factor
rrn3 [Glarea lozoyensis 74030]
Length = 465
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 16/128 (12%)
Query: 154 QVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAM 213
++L RVH A+K + L+P A L PI+ ++ P + E K+ V Y+EN L+L A
Sbjct: 168 ELLWRVHVAIKYLLRLIPSASGILSPIISKKFP---DSEESKKIHVTYIENLLRLIEYA- 223
Query: 214 GELVRSTLLMAVVDRL--IDLDMEIGWDDILHDDFSKGIFEM------ELEDV--EEAAD 263
EL S + + DR+ ID++M++ DDI +D + + E +EDV EE+
Sbjct: 224 PELA-SDVFSLITDRVVKIDVEMQLSLDDI-DNDVAVAVVEALSMNQKVIEDVRDEESDS 281
Query: 264 DAEQVGDE 271
DA V E
Sbjct: 282 DAASVTSE 289
Score = 41.6 bits (96), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 11/81 (13%)
Query: 434 LETVLKHDLNPLKVCLPSVVSEFLQQSKAAR-----LFTVSETFVFNDLLESELSRAFGG 488
L +V+ LNPLKVC P +V+EF +K AR F+ + T D+ + + ++
Sbjct: 348 LNSVIYSKLNPLKVCSPVIVAEF---AKIARHLGFIQFSSAGTAALRDVGQLNNNESWHQ 404
Query: 489 LERLDMFFPFDPCLLKKSDRF 509
LE FPFDP L S R+
Sbjct: 405 LE---AHFPFDPYQLPISKRW 422
>gi|323452015|gb|EGB07890.1| hypothetical protein AURANDRAFT_71709 [Aureococcus anophagefferens]
Length = 2046
Score = 45.8 bits (107), Expect = 0.055, Method: Composition-based stats.
Identities = 53/221 (23%), Positives = 88/221 (39%), Gaps = 31/221 (14%)
Query: 310 RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPC 369
+ ++F +F A A P C +FA L V P +T++ AV+YLAS + R +
Sbjct: 617 KFVQFAVFSAAASSPARCA-KFARRLTLVVADEATPLVTKVPAVAYLASLVCRCAAVDAP 675
Query: 370 FIVSLLKRLVDWCLEYCNIL----GGDINPKAHR-----VFYSGCQAIMYVLCFRMRSIM 420
+ + L E L G + +A + + ++ QA++YV+CFR +
Sbjct: 676 LVALSAEALFSAAEERLEKLRTRAGRSLVDEADQQATATLLFALVQALVYVVCFRGSDLF 735
Query: 421 DIPRLKSQLLLMPLE-----TVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFN 475
++ + E + + L PL V EF KA F+ +
Sbjct: 736 GRAGWGARYDALADEGRWDRLLFGNALKPLDRADARVRDEFRATLKATAKFSAA------ 789
Query: 476 DLLESELSRAFGGLER--------LDMFFPFDPCLLKKSDR 508
++++ A R FFPFDP +L KS R
Sbjct: 790 --FRAKVAEAARAPRRPRSTRPGDESFFFPFDPYVLPKSAR 828
>gi|296088507|emb|CBI37498.3| unnamed protein product [Vitis vinifera]
Length = 61
Score = 45.4 bits (106), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 25/37 (67%), Gaps = 5/37 (13%)
Query: 277 LSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIE 313
LS K G L DSL VLTFEHLESCEG GRLIE
Sbjct: 6 LSSKEFRGKL-----DSLRVLTFEHLESCEGGGRLIE 37
>gi|154416170|ref|XP_001581108.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121915332|gb|EAY20122.1| hypothetical protein TVAG_366300 [Trichomonas vaginalis G3]
Length = 479
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 42/205 (20%), Positives = 82/205 (40%), Gaps = 37/205 (18%)
Query: 312 IEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLS---P 368
++++ F A + +N +LA +F + TR +A Y ++ ++RA+++
Sbjct: 255 VQYIFFIASSFSSQNYQNFVGFLLAKLFDENV-NKRTRGNAAFYASTLIARAKYIDDQFA 313
Query: 369 CFIVSLLKRLVDWCLEYCNILGGDI---NPKAHRVFYSGCQAIMYVLCFRMRSI--MDI- 422
F++ + + LE+ N + H V+Y Q Y+ C+R M+I
Sbjct: 314 SFVLDYVSNFAECYLEHIKTTSPQFMTRNIQTHAVYYYALQCFAYIYCWRHSGFEKMEID 373
Query: 423 --PRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLES 480
R K LL ++L+ + P+ +F+ L
Sbjct: 374 VESRWKINLLF-------NNELDAMTAIDPNTAE------------------MFSSLGNI 408
Query: 481 ELSRAFGGLERLDMFFPFDPCLLKK 505
E +ER+ ++FP+DPC L +
Sbjct: 409 EYEPDSSVIERISVWFPYDPCPLDE 433
>gi|298711754|emb|CBJ32787.1| hypothetical protein Esi_0373_0014 [Ectocarpus siliculosus]
Length = 167
Score = 44.7 bits (104), Expect = 0.13, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 12/70 (17%)
Query: 316 MFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLL 375
M++AC P N F LA R S+V+YLA L RA F+ P + + +
Sbjct: 1 MWHACPYPPSNSSFVFLFQLA------------RQSSVAYLARSLGRASFVDPSVVATAV 48
Query: 376 KRLVDWCLEY 385
+ L+DW +Y
Sbjct: 49 QSLLDWAGQY 58
>gi|159116953|ref|XP_001708697.1| Transcription factor RRN3 [Giardia lamblia ATCC 50803]
gi|157436810|gb|EDO81023.1| Transcription factor RRN3 [Giardia lamblia ATCC 50803]
Length = 556
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 293 SLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSA 352
S ++ F L C T R +FV+FYA +LDP GL ++ T + +
Sbjct: 291 SAIIPCFARLGMCLRTIRYTQFVVFYAVSLDPSLPGLLIEYLIKRSLFDLSASISTYLDS 350
Query: 353 VSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPK 396
++YL SF++R L+ ++ +K L L+Y LG +++P+
Sbjct: 351 MNYLGSFIARFSGLTLPLMIGSIKLL----LQYATHLGAELDPE 390
>gi|392574560|gb|EIW67696.1| hypothetical protein TREMEDRAFT_12429, partial [Tremella
mesenterica DSM 1558]
Length = 823
Score = 42.4 bits (98), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 107/285 (37%), Gaps = 93/285 (32%)
Query: 312 IEFVMFYACALDPENCGLRFATMLADVF------VSGLYPPLT---RMSAVSYLASFLSR 362
I F++F + P + L +++ +S P++ R++A Y+ S ++R
Sbjct: 458 IPFLLFLCASFSPSHTDLFLGLLVSQALYGTTTSISASNTPISLNQRIAATVYVGSLVTR 517
Query: 363 ARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKAHR-----VFYSGCQAIMYVLCFRMR 417
AR+++ ++++ + L Y I G +P + R +FY+ CQA M + CFR R
Sbjct: 518 ARYVND----EHARQVMTYLLAY--IDGRLHHPASERFDELPLFYAVCQATMLIFCFRWR 571
Query: 418 SIMDIPRLKSQLLLMP-------------------------------------LETVLKH 440
++ + P L+ V+
Sbjct: 572 ALRPASVRAREDSGEPDDVEGGMGMVGELEMDDGTGETDESTQDGRWIKDLDVLQRVITS 631
Query: 441 DLNPLKVCLPSVVSEFLQ---QSKAARLFTVSETFV----------FNDLLE-------- 479
LNPL C P+VV F + Q+ A F++ E FN +
Sbjct: 632 PLNPLLGCNPTVVKTFAKVAHQTGFAYCFSIIEANAALGRNPMSSNFNTATKGKAQTPSA 691
Query: 480 SELSRAFG-GLER--------------LDMFFPFDPCLLKKSDRF 509
S ++ + G G+ LD +FPFDP L +S R+
Sbjct: 692 SRVTTSLGSGMANTLAKQARQSNIDAGLDDYFPFDPYDLARSGRY 736
>gi|308162348|gb|EFO64753.1| Transcription factor RRN3 [Giardia lamblia P15]
Length = 556
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 33/165 (20%)
Query: 259 EEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLES------------CE 306
EE +E+ E G L + S + + LD L+V F+HL + C+
Sbjct: 234 EEPQKHSEEDAVE---GCLLEDAESMDFYTDTLDQLLVSYFKHLRALWSSDSSSYVKRCQ 290
Query: 307 G--------------TGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSA 352
G T R +FV+FYA +LDP GL ++ + +
Sbjct: 291 GAIIPCFARLGMCLRTIRYTQFVVFYAVSLDPSLPGLLIEYLIKRSLFDLDASISIYLDS 350
Query: 353 VSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA 397
++YL SF++R L+ I +K L L+Y LG +++P++
Sbjct: 351 MNYLGSFIARFSGLTLPLITGSIKLL----LQYATHLGAELDPES 391
>gi|456864452|gb|EMF82851.1| spiro-SPASM protein [Leptospira weilii serovar Topaz str. LT2116]
Length = 514
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 60/144 (41%), Gaps = 15/144 (10%)
Query: 363 ARFLSPCFIVSLLKRLVD-WCLEYCNILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMD 421
FLSP F+ +LLK+ + + EY GG P H F A+ F ++ +
Sbjct: 260 GSFLSPVFLENLLKQQEESFSNEYSVCFGGLGEPLLHPEFAKLLSAVFQFSSFLLQELF- 318
Query: 422 IPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLL-ES 480
+ET L DLN + L ++ S F Q+ T +N L +
Sbjct: 319 ------------IETALYTDLNSILDFLNALDSSFRQKITWIVNLTTRNQEKYNSLYGKK 366
Query: 481 ELSRAFGGLERLDMFFPFDPCLLK 504
EL+R F LE+L FP + L+
Sbjct: 367 ELNRVFSNLEQLGKIFPKNKIYLQ 390
>gi|253741761|gb|EES98624.1| Transcription factor RRN3 [Giardia intestinalis ATCC 50581]
Length = 553
Score = 39.7 bits (91), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 293 SLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSA 352
S ++ + L C R +FV+FYA +LDP GL ++ T + +
Sbjct: 288 SALIPCYARLGMCLRNIRYTQFVVFYAVSLDPSLPGLFIEYLVKRSLFDVDASIGTYLDS 347
Query: 353 VSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA 397
++YL SF++R LS I + L L+Y LG +++P +
Sbjct: 348 MNYLGSFIARYSDLSHSLITGSITLL----LQYATQLGAELDPAS 388
>gi|256078060|ref|XP_002575316.1| hypothetical protein [Schistosoma mansoni]
gi|353232809|emb|CCD80165.1| hypothetical protein Smp_143670 [Schistosoma mansoni]
Length = 623
Score = 38.9 bits (89), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 58/139 (41%), Gaps = 9/139 (6%)
Query: 282 LSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVS 341
L+ NL+ + + L EH+ T + FY C+L + F L ++
Sbjct: 318 LNWNLLCSIFRRVRDLFSEHILPVNVTMVAFPMICFYICSLRG-GLVINFIDFLWNIIKD 376
Query: 342 GLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYC----NILGGDINPKA 397
+R+ A+SYL L +F I+ ++ + WC++Y +L N
Sbjct: 377 HCRDQGSRLMALSYLCFLLVNGKFCFIDLIIEIMHDMATWCIDYAYRHRGVLMTASNSTT 436
Query: 398 ----HRVFYSGCQAIMYVL 412
++++Y+ C ++Y+
Sbjct: 437 SLSDNKLYYAICNVLIYIF 455
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.138 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,510,137,635
Number of Sequences: 23463169
Number of extensions: 297108305
Number of successful extensions: 727125
Number of sequences better than 100.0: 413
Number of HSP's better than 100.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 304
Number of HSP's that attempted gapping in prelim test: 725485
Number of HSP's gapped (non-prelim): 672
length of query: 515
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 368
effective length of database: 8,910,109,524
effective search space: 3278920304832
effective search space used: 3278920304832
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 79 (35.0 bits)