BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010207
(515 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R4N9|RRN3_PONAB RNA polymerase I-specific transcription initiation factor RRN3
OS=Pongo abelii GN=RRN3 PE=2 SV=1
Length = 650
Score = 130 bits (326), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 139/555 (25%), Positives = 226/555 (40%), Gaps = 112/555 (20%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRA-LLETSLKALSGAVSYIDISHHESL 87
V E L + G+ +++ L + LDPD + + + L +V Y+ +
Sbjct: 56 VTEVLLKYKKGETNDFELLKNQL-----LDPDIKDDQIISWLLEFRSSVMYLTKDFEQ-- 108
Query: 88 LVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPH 147
L+SI W V++ + +L ++ ++ CL M+ S+F PP + +
Sbjct: 109 LISIILRLPWLKSQTVVEEYLAFLANLVSAQTVFLRPCLGMIASHFVPPRVIIKEGDVDV 168
Query: 148 GLERKHQV-----LSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYM 202
H AL+ I VP P L+PI+V++ P V L+ Y+
Sbjct: 169 SDSDDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLE---CYV 225
Query: 203 ENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAA 262
N L++ S +R +L ++++L+ LD+ DI ED EE A
Sbjct: 226 HNLLRI--SVYFPTLRHEILELIIEKLLKLDVNASRQDI--------------EDAEETA 269
Query: 263 -------DDAEQVGDELPSGSLSRKSLSG--------NLIAELLDSLMVLTFEHLES-CE 306
D E + + ++ +G + +AE LD LM L +++ C
Sbjct: 270 TQTCGGTDSTEGLFNMDEDEETEHETKAGPERLDQMVHPVAECLDILMSLVLSYMKDVCY 329
Query: 307 GTGRL----------------------------IEFVMFYACALDPENCGLRFATMLADV 338
G++ ++F MFY C+ F A+
Sbjct: 330 VDGQVDNGKTKDLYRDLINIFDKLLLSTHASCHVQFFMFYLCS---------FKLGFAEA 380
Query: 339 FVSGLY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILG 390
F+ L+ P + R +A +Y+ SFL+RA+F+ + S L LV+W Y N
Sbjct: 381 FLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLITVRSCLDLLVNWLHIYLN--N 438
Query: 391 GDINPKA------HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP---LETVLKHD 441
D KA H FYS CQA+ Y FR + ++ LK L + E ++
Sbjct: 439 QDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLS-GNLKEGLRYLQSLNFEWIVMSQ 497
Query: 442 LNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER-------LDM 494
LNPLK+CLPSVV+ F + +L N+ + R+ G + LD
Sbjct: 498 LNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQTCTNPLDT 557
Query: 495 FFPFDPCLLKKSDRF 509
FFPFDPC+LK+S +F
Sbjct: 558 FFPFDPCVLKRSKKF 572
>sp|B2RS91|RRN3_MOUSE RNA polymerase I-specific transcription initiation factor RRN3
OS=Mus musculus GN=Rrn3 PE=1 SV=1
Length = 656
Score = 129 bits (323), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 124/495 (25%), Positives = 210/495 (42%), Gaps = 98/495 (19%)
Query: 85 ESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDK-- 142
E L+ I + N V++ + +L ++ ++ CL+M+ S+F PP + +
Sbjct: 105 EQLINIILRLPWLNRSQRVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIVKEGG 164
Query: 143 ---LKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIV 199
+ + H AL+ I VP P L+PI+V++ P V L+
Sbjct: 165 IDVSDSDDEDDNLPAIFDTCHRALQIITRYVPSTPWFLMPILVEKFPFVRKSERTLE--- 221
Query: 200 VYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILH-----------DDFSK 248
Y+ N L++ S +R +L V+++L+ LD+ + DI D ++
Sbjct: 222 CYVHNLLRI--SLYFPTLRREILELVIEKLLKLDVSVSRQDIEDAEEKAAQTCGGTDTTE 279
Query: 249 GIFEMELEDVEEAADDAEQVGDELPS----------------------------GSLSR- 279
G+F M D +E D ++ E P+ G +
Sbjct: 280 GLFNM---DEDEDTDPEKKADQEQPNQMAHPTAERLDVLLCLLLSYIEDVCRVHGKIDNN 336
Query: 280 --KSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLAD 337
K L +LI+ + D L++ T SC ++F MF+ C+ F A+
Sbjct: 337 KTKDLYRDLIS-IFDKLLLPTHA---SCH-----VQFFMFFLCS---------FKLGFAE 378
Query: 338 VFVSGLY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNIL 389
F+ L+ P + R +A +Y+ SFL+RA+F+ + + L LV+W Y +
Sbjct: 379 AFLEHLWKKLQDPNNPAIIRQAAANYIGSFLARAKFIPLITVKTCLDLLVNWLHMY--LT 436
Query: 390 GGDINPKA------HRVFYSGCQAIMYVLCFRMRSIM--DIPRLKSQLLLMPLETVLKHD 441
D KA H FYS CQA+ Y + FR + ++ ++ + L + E ++
Sbjct: 437 NQDSGTKAFCDVALHGPFYSACQAVFYTVVFRHKQLLSGNLKQGLQYLQSLNFERIVLSQ 496
Query: 442 LNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER-------LDM 494
LNPLK+CLP VV+ F + +L N + R+ G + LD
Sbjct: 497 LNPLKICLPQVVNFFAAITNKYQLVFCYTIMERNSRQMLPVIRSTAGGDSVQTCTNPLDT 556
Query: 495 FFPFDPCLLKKSDRF 509
FFPFDPC+LK+S +F
Sbjct: 557 FFPFDPCVLKRSKKF 571
>sp|Q9NYV6|RRN3_HUMAN RNA polymerase I-specific transcription initiation factor RRN3
OS=Homo sapiens GN=RRN3 PE=1 SV=1
Length = 651
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 136/550 (24%), Positives = 227/550 (41%), Gaps = 101/550 (18%)
Query: 29 VREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRA-LLETSLKALSGAVSYIDISHHESL 87
V E L + G+ +++ L + LDPD + + L ++ Y+ E L
Sbjct: 56 VTEVLLKYKKGETNDFELLKNQL-----LDPDIKDDQIINWLLEFRSSIMYL-TKDFEQL 109
Query: 88 LVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPH 147
+ I + N V++ + +L ++ ++ CL+M+ S+F PP + +
Sbjct: 110 ISIILRLPWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGDVDV 169
Query: 148 GLERKHQV-----LSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYM 202
H AL+ I VP P L+PI+V++ P V L+ Y+
Sbjct: 170 SDSDDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLE---CYV 226
Query: 203 ENTLKLESSAMGELVRSTLLMAVVDRLIDLDM-----------EIGWDDILHDDFSKGIF 251
N L++ S +R +L ++++L+ LD+ E D ++G+F
Sbjct: 227 HNLLRI--SVYFPTLRHEILELIIEKLLKLDVNASRQGIEDAEETATQTCGGTDSTEGLF 284
Query: 252 EMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLES-CEGTGR 310
M+ ++ E A G E R + +AE LD LM L +++ C G+
Sbjct: 285 NMDEDEETEHETKA---GPE-------RLDQMVHPVAERLDILMSLVLSYMKDVCYVDGK 334
Query: 311 L----------------------------IEFVMFYACALDPENCGLRFATMLADVFVSG 342
+ ++F MFY C+ F A+ F+
Sbjct: 335 VDNGKTKDLYRDLINIFDKLLLPTHASCHVQFFMFYLCS---------FKLGFAEAFLEH 385
Query: 343 LY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDIN 394
L+ P + R +A +Y+ SFL+RA+F+ + S L LV+W Y N D
Sbjct: 386 LWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLLVNWLHIYLN--NQDSG 443
Query: 395 PKA------HRVFYSGCQAIMYVLCFRMRSIM--DIPRLKSQLLLMPLETVLKHDLNPLK 446
KA H FYS CQA+ Y FR + ++ ++ L + E ++ LNPLK
Sbjct: 444 TKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLKEGLQYLQSLNFERIVMSQLNPLK 503
Query: 447 VCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER-------LDMFFPFD 499
+CLPSVV+ F + +L N+ + R+ G + LD FFPFD
Sbjct: 504 ICLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQICTNPLDTFFPFD 563
Query: 500 PCLLKKSDRF 509
PC+LK+S +F
Sbjct: 564 PCVLKRSKKF 573
>sp|Q10110|RRN3_SCHPO RNA polymerase I-specific transcription initiation factor rrn3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rrn3 PE=3 SV=1
Length = 599
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 109/211 (51%), Gaps = 23/211 (10%)
Query: 310 RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPC 369
R +F++F+A LDPE + F +L +V + P R+S Y+ S+++RA+ L
Sbjct: 358 RYTQFLIFWASQLDPEFTDI-FLGVLTEVCLDPSQPYTLRLSGAMYIGSYVARAKALEKN 416
Query: 370 ---FIVSLLKRLVDWCLEYC-NILGGDINPKAHRVFYSGCQAIMYVLCFRMRSI------ 419
IV+++ R V+ L+ C N L D+ K H VFY+ Q+I Y+ CFR R +
Sbjct: 417 TIQIIVNMMTRWVEAYLDQCENELSDDLLSK-HSVFYAINQSIFYIFCFRWRELCVSDES 475
Query: 420 --MDIPRLKSQLLLMPL--ETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFN 475
M+ PR + + + +VL LNPL+ C P++V LQ +K A +V++
Sbjct: 476 ESME-PRPNEWIPGLEILHRSVLSR-LNPLRYCSPNIV---LQFAKVANHLNF--MYVYS 528
Query: 476 DLLESELSRAFGGLERLDMFFPFDPCLLKKS 506
+ ++ G + +D +FPFDP L KS
Sbjct: 529 IIEQNRKGIFREGFDTMDAYFPFDPYRLTKS 559
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 83/173 (47%), Gaps = 20/173 (11%)
Query: 65 LETSLKALSGAVSYIDISHHESLLVSIFGMSMW-NYDPDVMDALKGLIISLAASNGKYVD 123
L+ L AL+ VS +D S + SL++S+ S+W + D + + +L ++ Y+
Sbjct: 95 LQNLLSALTCNVSRLD-SSNSSLVMSVLD-SVWVSRDESFVRCYTRFLGNLISAQSNYLP 152
Query: 124 SCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQ 183
+TML+ + L P L ++ H ALK + +LVP A + L +++
Sbjct: 153 LVMTMLIQHM---------LYRPDSLAIHYE---HAHMALKYVLELVPRAHSFLYSSILE 200
Query: 184 RMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEI 236
P K E L + Y+ N L + ++ +L A++D++I +D+EI
Sbjct: 201 EFPY---KDESLLAQMTYISNVLSICEYVPS--IKGPVLHAIIDKIIQIDVEI 248
>sp|Q2M238|RN3P1_HUMAN Putative RRN3-like protein RRN3P1 OS=Homo sapiens GN=RRN3P1 PE=5
SV=1
Length = 152
Score = 75.1 bits (183), Expect = 1e-12, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 66/126 (52%), Gaps = 12/126 (9%)
Query: 345 PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA------H 398
P + R +A +Y+ SFL+RA+F+S + L LV+W Y N D KA H
Sbjct: 21 PAIIRQAAGNYIGSFLARAKFISLITVKPCLDLLVNWLHIYLN--NQDSGTKAFCDVALH 78
Query: 399 RVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLL---MPLETVLKHDLNPLKVCLPSVVSE 455
FYS CQA+ Y FR + ++ LK L + E ++ LNPLK+CLPSVV+
Sbjct: 79 GPFYSACQAVFYTFVFRHKQLLS-GNLKEGLQYPQSLNFERIVMSQLNPLKICLPSVVNF 137
Query: 456 FLQQSK 461
F +K
Sbjct: 138 FAAITK 143
>sp|P36070|RRN3_YEAST RNA polymerase I-specific transcription initiation factor RRN3
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RRN3 PE=1 SV=1
Length = 627
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 114/305 (37%), Gaps = 67/305 (21%)
Query: 257 DVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVL---------TFEHLESCEG 307
D+ E D E+ EL G K LS L DS++ L T E LES EG
Sbjct: 306 DIIEGMDGTEEYNVELTQGI---KELSTKL-----DSILTLVSTHVEEQVTPESLESGEG 357
Query: 308 TG-------------------RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLT 348
G R I+++MF+ E F L D+ +
Sbjct: 358 VGVFNTLTTLFKTHVLPTYYTRSIQYIMFHVSQQQLELMD-SFLVTLIDISFAVNEAAEK 416
Query: 349 RMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA----HRVFYSG 404
++ ++ YL S+++RA+ LS I+ + L W Y +++ + + FY+
Sbjct: 417 KIKSLQYLGSYIARAKKLSRTQIIFVASYLTSWLNRYVIEREEEVDQRGGMERFKHFYAA 476
Query: 405 CQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVV---SEFLQQSK 461
QA+ Y+ CFR D L + ++ NPLK C +V+ + QQ
Sbjct: 477 FQALCYIFCFRHNIFRDTDGNWECELDKFFQRMVISKFNPLKFCNENVMLMFARIAQQES 536
Query: 462 AARLFTVSETFVFNDLLESELSRAFGGLER----------------------LDMFFPFD 499
A F++ E N+ L + +A + L +FP+D
Sbjct: 537 VAYCFSIIEN-NNNERLRGIIGKADSDKKENSAQANTTSSSWSLATRQQFIDLQSYFPYD 595
Query: 500 PCLLK 504
P LK
Sbjct: 596 PLFLK 600
>sp|P48322|YPJ1_CAEEL Uncharacterized protein C36E8.1 OS=Caenorhabditis elegans
GN=C36E8.1 PE=3 SV=1
Length = 654
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 81/207 (39%), Gaps = 18/207 (8%)
Query: 310 RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMS--AVSYLASFLSRARFLS 367
+ + F+ Y C+L E + P R S A SYLA+FL+RA+++
Sbjct: 371 QYVSFIWLYFCSLSQEYEKKMLEHLWQVTIRMPRAPADARKSQGAASYLAAFLARAKYVK 430
Query: 368 PCFIVSLLKRLVDWCLEYCNILG---GDINP--KAHRVFYSGCQAIMYVLCFRMRSIMDI 422
+ L+ + W Y + G I P + H FYS QA V FR + +
Sbjct: 431 KSTAFTWLEEVYIWLRHYVDQFGSGSSQILPGLQRHGTFYSVSQAFFLVFAFRYKEFVKN 490
Query: 423 PRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESEL 482
+ + + V+ L PLK V F +++ +L + E+
Sbjct: 491 KDMLETIRRWGVGRVVHSPLEPLKYVSKPVARCFSAITRSLQLVYCNHIIPIE-----EV 545
Query: 483 SRAFGGLERLDMFFPFDPCLLKKSDRF 509
R F D FPFD LK+S +F
Sbjct: 546 QRPF------DDMFPFDCYHLKESSKF 566
>sp|Q7ZU92|PARN_DANRE Poly(A)-specific ribonuclease PARN OS=Danio rerio GN=parn PE=1 SV=2
Length = 660
Score = 36.6 bits (83), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 14/74 (18%)
Query: 337 DVFVSGLYPPLTRMSAVSYLASFLS--------RARFLSPCFIVSLLKRLVDWCLEYCNI 388
D F++GL +S +YL SFL+ R++ L P + L R++D + Y N+
Sbjct: 380 DAFITGL----CFISMANYLGSFLTPPKSHISARSKLLEPFYNKLFLMRVID--IPYLNM 433
Query: 389 LGGDINPKAHRVFY 402
G D+ PK V Y
Sbjct: 434 SGPDLQPKRDHVLY 447
>sp|Q971S9|SRP54_SULTO Signal recognition particle 54 kDa protein OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=srp54 PE=3 SV=2
Length = 445
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 98 NYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPP-SYFLDKLKEPHGLERKHQVL 156
NYD V D +K L ISL S+ LVSN T L+K K P +ER+ +
Sbjct: 17 NYDKAVNDFIKELQISLIKSD------VNVKLVSNLTQKIKDRLEKEKPPTAIERREWFI 70
Query: 157 SRVHAALKSIF--DLVPLAPTRLLPIVV 182
S V+ L +F D+ P + +P V+
Sbjct: 71 SIVYDELSKLFGGDINPEVMPKKIPYVI 98
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 179,368,098
Number of Sequences: 539616
Number of extensions: 7186346
Number of successful extensions: 17794
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 17759
Number of HSP's gapped (non-prelim): 17
length of query: 515
length of database: 191,569,459
effective HSP length: 122
effective length of query: 393
effective length of database: 125,736,307
effective search space: 49414368651
effective search space used: 49414368651
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)