Query 010207
Match_columns 515
No_of_seqs 160 out of 244
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 22:13:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010207.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010207hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tj1_A RNA polymerase I-specif 100.0 2E-122 8E-127 1007.6 32.4 470 16-514 65-632 (649)
2 2vgl_B AP-2 complex subunit be 43.6 75 0.0026 33.8 9.4 71 159-237 448-520 (591)
3 2vgl_B AP-2 complex subunit be 31.7 95 0.0032 33.0 7.8 109 84-217 351-459 (591)
4 1ibr_B P95, importin beta-1 su 27.6 92 0.0031 30.9 6.5 33 330-362 35-67 (462)
5 1h2v_C 80 kDa nuclear CAP bind 24.7 2.4E+02 0.0083 31.5 9.7 116 101-231 61-182 (771)
6 2qk2_A LP04448P; mini spindles 18.7 5.1E+02 0.018 23.2 10.7 87 84-188 54-145 (242)
7 2ca6_A RAN GTPase-activating p 17.9 38 0.0013 33.6 1.2 6 286-291 376-381 (386)
8 4fdd_A Transportin-1; heat rep 17.6 6.8E+02 0.023 27.3 11.6 70 64-134 602-680 (852)
9 2qk1_A Protein STU2; STU2P, XM 15.6 6.6E+02 0.023 23.1 11.3 109 83-209 57-177 (249)
10 3e9v_A Protein BTG2; B-cell tr 14.5 2.5E+02 0.0086 23.9 5.4 36 350-385 7-42 (120)
No 1
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-122 Score=1007.56 Aligned_cols=470 Identities=22% Similarity=0.315 Sum_probs=391.3
Q ss_pred ccCcCChHHHHHHHHHHHHHhhcCCchHHHHHHHHhccCC-CCCcchHHHHHHHHHHHHccccccCccchHHHHHHHHcC
Q 010207 16 EDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSG-RLDPDNRALLETSLKALSGAVSYIDISHHESLLVSIFGM 94 (515)
Q Consensus 16 ~~~~~s~~~~~~~V~~aL~~~~~Gd~~~Y~~L~~~l~~~~-~~~~~~~~~l~~~L~aL~~~Vs~Ld~~~~~~LV~ail~~ 94 (515)
++.+||++++++|||+||+++++||+++|+.|+++|+.+. ..++.++++|..||++|++|||+||+++|++||++||++
T Consensus 65 ~~~~~s~~~~~~~V~~AL~~~~~Gd~~~Yd~L~~~~~~~~~~~d~~~~~~L~~~L~aLs~~Vs~Ld~~~~~~LV~aIL~~ 144 (649)
T 3tj1_A 65 KDEVFSAAMYSRFVKSALDDLDKNDSTQIGIIANQVALPSKNPERINDKNLNILLDILSSNINRIESSRGTFLIQSIINF 144 (649)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSCTTCTTSCCHHHHHHHHHHHHHTGGGGCSGGGHHHHHHHHTC
T ss_pred chHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCcCcCcCCHHHHHHHHHHHHhhhhhcCchhHHHHHHHHhCC
Confidence 4678999999999999999999999999999999999654 556678899999999999999999988999999999999
Q ss_pred -CCcCCChhHHHHHHHHHHHHHhcccCcHHHHHHHHhhccCCCcccccccCCCCCchhhhhhHHHHHHHHHHHHhHcCCC
Q 010207 95 -SMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLA 173 (515)
Q Consensus 95 -~~W~~~~~~v~~y~~Fl~~Lvsa~~~y~~~vl~~LV~~F~p~~~~~~~~~~~~~~~~~~~~~~~~H~~L~~Il~lvP~a 173 (515)
+||.+++.++++|++||++||||||+|+++|++|||++|+|++. ...++|.+|++|+++||++
T Consensus 145 ~~W~~r~~~~v~~Y~~FL~~LvSa~~~yl~~vl~mLV~~F~~~~~----------------~~~~~H~~L~~Il~lvP~s 208 (649)
T 3tj1_A 145 EKWWELPPHTLSKYIYFIKILCSSIPKWWQDVSMILVSCFILPIK----------------QTVCHHDMLKYFLRMIPSS 208 (649)
T ss_dssp TTGGGSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHGGGSCHH----------------HHHHHHHHHHHHHHHCGGG
T ss_pred chhccCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCCc----------------ccHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999998643 1357999999999999999
Q ss_pred hhhhHHHHHhcCCCCcCccccccchhhhHHHHHHhhhccchhhHHHHHHHHHHHHHHhhccccccc-ccccccccccccc
Q 010207 174 PTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWD-DILHDDFSKGIFE 252 (515)
Q Consensus 174 ~~~L~~~l~~~FP~~~~~~~~~~~h~~Yv~NlL~l~~y~~~p~L~~~il~lIi~rli~iDVei~~d-di~~d~~~~~if~ 252 (515)
+++|.++|+++|||+++++ +.|++||+|||+|++|| |+||++||++||+|||+||||||+| |..+|+..+++++
T Consensus 209 ~~~L~~iL~~~FP~~~~s~---~~~~~Yv~NLLrl~~Y~--PeL~~~Il~LIierlikiDVeiq~eledldDd~~~~~~~ 283 (649)
T 3tj1_A 209 MGFIDTYLAKFFPNKNDTR---RKLVNYTSNLLKLRGYC--SELGFQIWSLLIEKIISIDVELQNELDELDDDVDDDDLE 283 (649)
T ss_dssp HHHHHHHHHHTCCCTTSCH---HHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHhCCCCCCch---hHHHHHHHHHHHHHhhc--hHHHHHHHHHHHHHHHHhhhccccchhhccchhhhhhhh
Confidence 9999999999999999998 45699999999999998 9999999999999999999999996 3344444444554
Q ss_pred ccchhh--------hhhc---------------ccccccC-C-----CCCCCchh---hcccchhhHHHHHHHHHHHHHH
Q 010207 253 MELEDV--------EEAA---------------DDAEQVG-D-----ELPSGSLS---RKSLSGNLIAELLDSLMVLTFE 300 (515)
Q Consensus 253 me~dd~--------~~~~---------------~d~e~~~-d-----e~~~~~~~---~~~~~~~~~a~kLD~lm~~lf~ 300 (515)
++++++ +++. +|+++++ | +...++++ .+..+++++++|||+||.++|+
T Consensus 284 ~~~~~~~~~~~~~dd~~~~~~~~~~~~~~~~~~~d~~~~~~dd~~~de~~d~~~e~~~~~~~~i~~~~~KLD~im~llf~ 363 (649)
T 3tj1_A 284 EVDLEDDDDLDDDSGDDDDENCGNSNEELRSGAADGSQSDSEDMDIIEGMDGTEEYNVELTQGIKELSTKLDSILTLVST 363 (649)
T ss_dssp ------------------------------------------------------------CGGGHHHHHHHHHHHHHHHH
T ss_pred hhcccccccccccccchhhccccccccccccccccccccccccccccccccchhhcchhhhhhHHHHHHHHHHHHHHHHH
Confidence 432210 0000 0011111 0 00111122 1345789999999999999999
Q ss_pred HhhhhccCC----------------------------ccceeeeeeeecCCccchhHHHHHHHHHHHhcCCCChhhhhhH
Q 010207 301 HLESCEGTG----------------------------RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSA 352 (515)
Q Consensus 301 ~l~~~~~~~----------------------------~l~~FllFy~cs~~~~~~~~~F~~~L~~~~~~~~~~~~~R~aA 352 (515)
|++++++++ +..||||||+||++|++++ +|+++||+++++||+|+++||+|
T Consensus 364 ~~~~~~~~~~l~~~~~~~lf~~Ll~~F~~~ILpT~~sr~vQFl~Fy~cs~~~~~~~-~Fl~~L~~~~~~~~~~~~~RqaA 442 (649)
T 3tj1_A 364 HVEEQVTPESLESGEGVGVFNTLTTLFKTHVLPTYYTRSIQYIMFHVSQQQLELMD-SFLVTLIDISFAVNEAAEKKIKS 442 (649)
T ss_dssp HHHHHSCHHHHHSSTHHHHHHHHHHHHHHTTTTSCSCSSTTHHHHHHHTTSHHHHH-HHHHHHHHHHHCSSSCHHHHHHH
T ss_pred HHhhhcCCCccccchHHHHHHHHHHHHHHhccccccCccHHHHHHHHHhCCHHHHH-HHHHHHHHHHhCCCCcHHHHHHH
Confidence 999987543 2345999999999999986 99999999999999999999999
Q ss_pred HHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHhhhhCC----CCCCCchhHHHHHHHHHHHHHhhhccccccCc-hhhh
Q 010207 353 VSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGG----DINPKAHRVFYSGCQAIMYVLCFRMRSIMDIP-RLKS 427 (515)
Q Consensus 353 aaYLaSflARAk~v~~~~v~~~l~~L~~w~~~Y~~~~~~----~~~~~~h~~FYs~cQA~~YIfCFR~~dL~~~~-~~~~ 427 (515)
|+|||||||||||||.++|+.++++|++||++|+.++++ ..++++|++|||+|||+|||||||||+|++.+ +|..
T Consensus 443 aaYLaSflARAk~v~~~~v~~vl~~L~~wl~~Yi~~~~~~~~~~~~~~~~~~FYs~cQA~fYIfCFR~rdL~~~~~~w~~ 522 (649)
T 3tj1_A 443 LQYLGSYIARAKKLSRTQIIFVASYLTSWLNRYVIEREEEVDQRGGMERFKHFYAAFQALCYIFCFRHNIFRDTDGNWEC 522 (649)
T ss_dssp HHHHHHHHHHBTTCCHHHHHHHHHHHHHHHHHHHHHHGGGTTSSSCGGGGHHHHHHHHHHHHHHHHHGGGGBCTTSCBGG
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhcccccCCccHHHHhHHHHHHHHHHHHHHHHHHHHhccccchhh
Confidence 999999999999999999999999999999999987654 33679999999999999999999999999865 5666
Q ss_pred hhhccchhHhhccCCCCcccccHHHHHHHHHHhhhcccceeecccccchhhhhhhhhc----cC----------------
Q 010207 428 QLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRA----FG---------------- 487 (515)
Q Consensus 428 ~l~~~~l~rii~s~LNPLk~C~p~VV~~Fa~ia~~~~l~y~~~~~~~~~~~e~~~~~~----~~---------------- 487 (515)
+++ ++|+|+|+|||||||+|+|+||.+||+|||++||+||+ +++|+|.+.. .|
T Consensus 523 ~l~-~~l~riv~s~LNPLk~C~p~VV~eFA~ia~~~~l~YCy------~iiE~NkR~rl~~~~~~~~~~~~~~~~~~~~~ 595 (649)
T 3tj1_A 523 ELD-KFFQRMVISKFNPLKFCNENVMLMFARIAQQESVAYCF------SIIENNNNERLRGIIGKADSDKKENSAQANTT 595 (649)
T ss_dssp GHH-HHHHHHHHSTTCHHHHSCHHHHHHHHHHHHHTTSCCCH------HHHHHHHHHHHHC-------------------
T ss_pred hHh-hhHHHHhcCCCCCcccCCHHHHHHHHHHHHHcCeEeeh------HhhhcccccccccccccccCCccccccccccc
Confidence 663 67999999999999999999999999999999999998 4677664321 11
Q ss_pred ----------CcccCcccCCCCCCCcccccccccccC
Q 010207 488 ----------GLERLDMFFPFDPCLLKKSDRFANATL 514 (515)
Q Consensus 488 ----------~~~~Ld~fFPFDPy~L~~S~~~I~p~~ 514 (515)
++++||+|||||||+||||++||+|+|
T Consensus 596 ~~~~~~~~~~~~~~Ld~fFPFDPy~L~~Sk~~i~~~Y 632 (649)
T 3tj1_A 596 SSSWSLATRQQFIDLQSYFPYDPLFLKNYKILMKEYY 632 (649)
T ss_dssp -CCCCHHHHHHHHHHHHCCTTSCCCSHHHHHHHGGGB
T ss_pred ccccccccccccCcCcCCCCCCCcccccchhhhchhc
Confidence 124799999999999999999999998
No 2
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=43.63 E-value=75 Score=33.84 Aligned_cols=71 Identities=8% Similarity=0.065 Sum_probs=41.6
Q ss_pred HHHHHHHHHhHcCCChhhhHHHHHhcCCCCcCccccccchhhhHHHHHHhhhccchhhHHHHHHHHHHHHHHh--hcccc
Q 010207 159 VHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLID--LDMEI 236 (515)
Q Consensus 159 ~H~~L~~Il~lvP~a~~~L~~~l~~~FP~~~~~~~~~~~h~~Yv~NlL~l~~y~~~p~L~~~il~lIi~rli~--iDVei 236 (515)
+.-+|...-..+|. +.-+...+.++|+. .+. .+....+..+.++.... |+.....+.-++++... .|.++
T Consensus 448 ~~wilGey~~~~~~-~~~~l~~l~~~~~~--~~~---~vr~~~l~a~~Kl~~~~--p~~~~~~i~~ll~~~~~d~~d~ev 519 (591)
T 2vgl_B 448 MIWIVGEYAERIDN-ADELLESFLEGFHD--EST---QVQLTLLTAIVKLFLKK--PSETQELVQQVLSLATQDSDNPDL 519 (591)
T ss_dssp HHHHHHTTCTTCTT-HHHHHHHHSTTCSS--SCH---HHHHHHHHHHHHHHTTC--CSTTHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHcccccccC-HHHHHHHHHHhhcc--CCH---HHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHhhhcCCChHH
Confidence 33444544444444 33445555666663 233 23467888888888765 77776777777777652 34454
Q ss_pred c
Q 010207 237 G 237 (515)
Q Consensus 237 ~ 237 (515)
|
T Consensus 520 r 520 (591)
T 2vgl_B 520 R 520 (591)
T ss_dssp H
T ss_pred H
Confidence 4
No 3
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=31.71 E-value=95 Score=33.04 Aligned_cols=109 Identities=11% Similarity=0.152 Sum_probs=67.7
Q ss_pred hHHHHHHHHcCCCcCCChhHHHHHHHHHHHHHhcccCcHHHHHHHHhhccCCCcccccccCCCCCchhhhhhHHHHHHHH
Q 010207 84 HESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAAL 163 (515)
Q Consensus 84 ~~~LV~ail~~~~W~~~~~~v~~y~~Fl~~Lvsa~~~y~~~vl~~LV~~F~p~~~~~~~~~~~~~~~~~~~~~~~~H~~L 163 (515)
...+|..++.. .=...+++++.-+.-++.++...+.....|+..|++.+..... .+...+-.++
T Consensus 351 v~~iv~~L~~~-l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~---------------~v~~e~i~~l 414 (591)
T 2vgl_B 351 IAQVLAELKEY-ATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVN---------------YVVQEAIVVI 414 (591)
T ss_dssp HHHHHHHHHHH-TTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCH---------------HHHHHHHHHH
T ss_pred HHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccch---------------HHHHHHHHHH
Confidence 45677777653 1134556888888999999987776667777777775542211 1122233578
Q ss_pred HHHHhHcCCChhhhHHHHHhcCCCCcCccccccchhhhHHHHHHhhhccchhhH
Q 010207 164 KSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELV 217 (515)
Q Consensus 164 ~~Il~lvP~a~~~L~~~l~~~FP~~~~~~~~~~~h~~Yv~NlL~l~~y~~~p~L 217 (515)
+.|++-.|.......+.|.+.+.....+. -...++|+.+- ||+.+
T Consensus 415 ~~ii~~~p~~~~~~v~~L~~~l~~~~~~~--------~~~~~~wilGe-y~~~~ 459 (591)
T 2vgl_B 415 RDIFRKYPNKYESIIATLCENLDSLDEPD--------ARAAMIWIVGE-YAERI 459 (591)
T ss_dssp HHHHHHSCSSCCTTHHHHHHTTTTCCSHH--------HHHHHHHHHHT-TCTTC
T ss_pred HHHHHHCcchHHHHHHHHHHHHHhccCHH--------HHHHHHHHHHc-ccccc
Confidence 88888899887777777777765433221 13455566543 44554
No 4
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=27.61 E-value=92 Score=30.86 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCCChhhhhhHHHHHHHHHhh
Q 010207 330 RFATMLADVFVSGLYPPLTRMSAVSYLASFLSR 362 (515)
Q Consensus 330 ~F~~~L~~~~~~~~~~~~~R~aAaaYLaSflAR 362 (515)
.|...|+.++.+.+.++.+|+.|+.+|..++.+
T Consensus 35 ~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~ 67 (462)
T 1ibr_B 35 TFLVELSRVLANPGNSQVARVAAGLQIKNSLTS 67 (462)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHhccc
Confidence 588899999998888999999999999999855
No 5
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=24.67 E-value=2.4e+02 Score=31.50 Aligned_cols=116 Identities=11% Similarity=0.094 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHHHHHhcccCcHHHHHHHHhhccCCCcccccccCCCCCchhhhhhHHHHHHHHHHHHhHcCC---Chhhh
Q 010207 101 PDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPL---APTRL 177 (515)
Q Consensus 101 ~~~v~~y~~Fl~~Lvsa~~~y~~~vl~~LV~~F~p~~~~~~~~~~~~~~~~~~~~~~~~H~~L~~Il~lvP~---a~~~L 177 (515)
|.....|..+++-|-+.++.+-..++..++.+|...- +...+.++...++-+..+++. .+..+
T Consensus 61 P~Kt~vyAaLVgllN~k~pe~G~~lv~~l~~~f~~~l--------------~~~~~~~~k~~lrFLa~L~n~~Vv~~~~i 126 (771)
T 1h2v_C 61 PEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESL--------------KANNYNEAVYLVRFLSDLVNCHVIAAPSM 126 (771)
T ss_dssp GGGHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--------------HTTCHHHHHHHHHHHHHHHHTTSBCHHHH
T ss_pred CCcchHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH--------------HccChHHHHHHHHHHHHhccCCeecHHHH
Confidence 6678889999999999999999999999999886221 111246788888999999885 66667
Q ss_pred HHHHHhcCCCCcCccccccchhhhHHHHHHhhhccchhhHH---HHHHHHHHHHHHh
Q 010207 178 LPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVR---STLLMAVVDRLID 231 (515)
Q Consensus 178 ~~~l~~~FP~~~~~~~~~~~h~~Yv~NlL~l~~y~~~p~L~---~~il~lIi~rli~ 231 (515)
.+++..-+=...+....+..--.|++.+|...-|+ |..|. ..-+..|++++-.
T Consensus 127 l~lL~~Ll~~~~e~~~~q~r~D~~v~~vL~~Lp~~-G~~L~e~~~~~l~~lle~~~~ 182 (771)
T 1h2v_C 127 VAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWV-GKELYEKKDAEMDRIFANTES 182 (771)
T ss_dssp HHHHHHHHHGGGCSSCCHHHHHHHHHHHHTTHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcCCcccchhHHHHHHHHHHHHH-HHHHHhcCHHHHHHHHHHHHH
Confidence 77766554332322211101135888888776664 44442 3346667777644
No 6
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=18.70 E-value=5.1e+02 Score=23.22 Aligned_cols=87 Identities=13% Similarity=0.235 Sum_probs=53.6
Q ss_pred hHHHHHHHHcCCCc-CCChhHHHHHHHHHHHHHhccc----CcHHHHHHHHhhccCCCcccccccCCCCCchhhhhhHHH
Q 010207 84 HESLLVSIFGMSMW-NYDPDVMDALKGLIISLAASNG----KYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSR 158 (515)
Q Consensus 84 ~~~LV~ail~~~~W-~~~~~~v~~y~~Fl~~Lvsa~~----~y~~~vl~~LV~~F~p~~~~~~~~~~~~~~~~~~~~~~~ 158 (515)
...++..+.+. .- +....++.+-..-++.|+..-+ .|+..++..|...+..+. ..+.+.
T Consensus 54 ~~~i~~~L~~~-l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~---------------~~vr~~ 117 (242)
T 2qk2_A 54 YGALVSALKKV-ITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKK---------------PNVVTA 117 (242)
T ss_dssp CHHHHHHHHHH-HHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCC---------------HHHHHH
T ss_pred HHHHHHHHHHH-hccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCC---------------HHHHHH
Confidence 45666665542 11 2233466666666666664433 577777777777666332 244577
Q ss_pred HHHHHHHHHhHcCCChhhhHHHHHhcCCCC
Q 010207 159 VHAALKSIFDLVPLAPTRLLPIVVQRMPTV 188 (515)
Q Consensus 159 ~H~~L~~Il~lvP~a~~~L~~~l~~~FP~~ 188 (515)
...+|..+....+ ...++|.|....-++
T Consensus 118 a~~aL~~~~~~~~--~~~ll~~l~~~l~~~ 145 (242)
T 2qk2_A 118 LREAIDAIYASTS--LEAQQESIVESLSNK 145 (242)
T ss_dssp HHHHHHHHHTTSC--HHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCC--HHHHHHHHHHHHcCC
Confidence 8889998888765 466778888777664
No 7
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=17.87 E-value=38 Score=33.56 Aligned_cols=6 Identities=33% Similarity=0.351 Sum_probs=0.0
Q ss_pred hHHHHH
Q 010207 286 LIAELL 291 (515)
Q Consensus 286 ~~a~kL 291 (515)
+.+++|
T Consensus 376 ~~~~~~ 381 (386)
T 2ca6_A 376 ELADEL 381 (386)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 344443
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=17.63 E-value=6.8e+02 Score=27.28 Aligned_cols=70 Identities=17% Similarity=0.229 Sum_probs=47.1
Q ss_pred HHHHHHHHHHccccccCccc-----hHHHHHHHHcCCCcCCChhHHHHHHHHHHHHHhccc----CcHHHHHHHHhhccC
Q 010207 64 LLETSLKALSGAVSYIDISH-----HESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNG----KYVDSCLTMLVSNFT 134 (515)
Q Consensus 64 ~l~~~L~aL~~~Vs~Ld~~~-----~~~LV~ail~~~~W~~~~~~v~~y~~Fl~~Lvsa~~----~y~~~vl~~LV~~F~ 134 (515)
.....+..++..+..++..- ...++..++.. ..+..+++++.....++.++.+-+ .|+..++..+++.+.
T Consensus 602 ~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~ 680 (852)
T 4fdd_A 602 FMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQC-MQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLN 680 (852)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHH-TTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHH-hCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcC
Confidence 34456777777777775321 02456667652 335556799999999999987654 567778888888774
No 9
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=15.62 E-value=6.6e+02 Score=23.14 Aligned_cols=109 Identities=16% Similarity=0.137 Sum_probs=64.9
Q ss_pred chHHHHHHHHcCCCcCC-ChhHHHHHHHHHHHHHhccc------CcHHHHHHHHhhccCCCcccccccCCCCCchhhhhh
Q 010207 83 HHESLLVSIFGMSMWNY-DPDVMDALKGLIISLAASNG------KYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQV 155 (515)
Q Consensus 83 ~~~~LV~ail~~~~W~~-~~~~v~~y~~Fl~~Lvsa~~------~y~~~vl~~LV~~F~p~~~~~~~~~~~~~~~~~~~~ 155 (515)
++..+++.+.+. .... ...++.+-+.-++.|+...+ .|...++..++..+... +..+
T Consensus 57 ~~~~~~~~L~~~-l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dk---------------k~~V 120 (249)
T 2qk1_A 57 NYSNLLGIYGHI-IQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEK---------------KPSV 120 (249)
T ss_dssp CCHHHHHHHHHH-HHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCC---------------CHHH
T ss_pred cHHHHHHHHHHH-hccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCC---------------CHHH
Confidence 446777776652 1122 23356666666666665443 78889999998877633 2345
Q ss_pred HHHHHHHHHHHHhHcC-C----ChhhhHHHHHhcCCCCcCccccccchhhhHHHHHHhh
Q 010207 156 LSRVHAALKSIFDLVP-L----APTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLE 209 (515)
Q Consensus 156 ~~~~H~~L~~Il~lvP-~----a~~~L~~~l~~~FP~~~~~~~~~~~h~~Yv~NlL~l~ 209 (515)
.+....+|..|...++ . ....+++.|...+-|++ +..+ ..-..++..++.-.
T Consensus 121 ~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~-~~vk-~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 121 IEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKT-PQIR-MECTQLFNASMKEE 177 (249)
T ss_dssp HHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSS-HHHH-HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCC-hHHH-HHHHHHHHHHHHHc
Confidence 5778899999999773 2 24467777777776652 2211 11145555555543
No 10
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=14.55 E-value=2.5e+02 Score=23.86 Aligned_cols=36 Identities=22% Similarity=0.174 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHH
Q 010207 350 MSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEY 385 (515)
Q Consensus 350 ~aAaaYLaSflARAk~v~~~~v~~~l~~L~~w~~~Y 385 (515)
.+|+.+|++|+-....+|...|..--+.|..-+...
T Consensus 7 ~~av~Fl~~~l~~~~~l~~~~v~~F~~~L~~~L~~~ 42 (120)
T 3e9v_A 7 AAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEH 42 (120)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHH
Confidence 579999999997777899998887777777655443
Done!