Query 010207
Match_columns 515
No_of_seqs 160 out of 244
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 22:13:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010207.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010207hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uw4b_ a.118.1.14 (B:) Regula 66.0 4.8 0.00035 36.4 6.6 84 25-134 4-87 (248)
2 d2vglb_ a.118.1.10 (B:) Adapti 47.1 20 0.0015 35.7 8.2 99 77-191 341-439 (579)
3 d1xqra1 a.118.1.21 (A:87-350) 14.2 3.2E+02 0.024 22.6 9.5 68 65-133 34-110 (264)
4 d1h2vc1 a.118.1.14 (C:29-290) 12.7 1.1E+02 0.008 27.0 5.3 17 288-304 161-177 (262)
5 d1brwa1 a.46.2.1 (A:1-70) Pyri 12.4 1.8E+02 0.013 19.9 5.4 59 29-93 3-64 (70)
6 d1u6gc_ a.118.1.2 (C:) Cullin- 12.3 3.4E+02 0.025 27.7 10.1 64 70-134 29-93 (1207)
7 d2vglb_ a.118.1.10 (B:) Adapti 11.7 4.4E+02 0.032 25.0 10.2 63 157-227 443-505 (579)
8 d1qgra_ a.118.1.1 (A:) Importi 10.7 1.6E+02 0.012 28.7 6.3 33 330-362 35-67 (876)
9 d1v74b_ a.24.20.1 (B:) Colicin 10.6 85 0.0062 23.4 2.9 23 15-37 64-86 (87)
10 d2jm6b1 f.1.4.1 (B:147-308) EA 10.0 3.9E+02 0.029 21.2 8.1 88 284-388 48-135 (162)
No 1
>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=66.03 E-value=4.8 Score=36.39 Aligned_cols=84 Identities=12% Similarity=0.163 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhhcCCchHHHHHHHHhccCCCCCcchHHHHHHHHHHHHccccccCccchHHHHHHHHcCCCcCCChhHH
Q 010207 25 LVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVM 104 (515)
Q Consensus 25 ~~~~V~~aL~~~~~Gd~~~Y~~L~~~l~~~~~~~~~~~~~l~~~L~aL~~~Vs~Ld~~~~~~LV~ail~~~~W~~~~~~v 104 (515)
+.+|||..|.+.. ....++.++.++..-...++ .....|++.|++ .|..+.+++
T Consensus 4 ~~~flr~li~n~L--s~~n~~~i~~~i~kl~~~n~----------------------e~~~~li~~i~~--~~~~~~~~i 57 (248)
T d1uw4b_ 4 LQEYVRKLLYKDL--SKVTTEKVLRQMRKLPWQDQ----------------------EVKDYVICCMIN--IWNVKYNSI 57 (248)
T ss_dssp HHHHHHHHHHTTC--STTSHHHHHHHHHTSCTTSH----------------------HHHHHHHHHHHC--GGGSCGGGH
T ss_pred HHHHHHHHHHhhC--CHhHHHHHHHHHHHCCCCCH----------------------HHHHHHHHHHhh--hhcCchhHH
Confidence 4578888776555 34457777777765533221 124678888886 488888999
Q ss_pred HHHHHHHHHHHhcccCcHHHHHHHHhhccC
Q 010207 105 DALKGLIISLAASNGKYVDSCLTMLVSNFT 134 (515)
Q Consensus 105 ~~y~~Fl~~Lvsa~~~y~~~vl~~LV~~F~ 134 (515)
..|..++..|...++.+...+++.++..|.
T Consensus 58 ~~yA~l~a~L~~~~~~f~~~~id~l~e~f~ 87 (248)
T d1uw4b_ 58 HCVANLLAGLVLYQEDVGIHVVDGVLEDIR 87 (248)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999998888888888888887665
No 2
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.15 E-value=20 Score=35.68 Aligned_cols=99 Identities=11% Similarity=0.171 Sum_probs=71.0
Q ss_pred cccCccchHHHHHHHHcCCCcCCChhHHHHHHHHHHHHHhcccCcHHHHHHHHhhccCCCcccccccCCCCCchhhhhhH
Q 010207 77 SYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVL 156 (515)
Q Consensus 77 s~Ld~~~~~~LV~ail~~~~W~~~~~~v~~y~~Fl~~Lvsa~~~y~~~vl~~LV~~F~p~~~~~~~~~~~~~~~~~~~~~ 156 (515)
...+..-...++..+... --..+.++++.-+.-++.++...+.....|+..|++.+.... ..+.
T Consensus 341 ~l~~~~n~~~Il~eL~~y-~~~~d~~~~~~ai~aI~~la~~~~~~~~~~i~~Ll~ll~~~~---------------~~v~ 404 (579)
T d2vglb_ 341 RLASQANIAQVLAELKEY-ATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKV---------------NYVV 404 (579)
T ss_dssp HTCCSSTHHHHHHHHHHH-TTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCC---------------HHHH
T ss_pred HHcChhhHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhCCc---------------hhHH
Confidence 334444456777777764 234556799999999999998888888888888877554221 1223
Q ss_pred HHHHHHHHHHHhHcCCChhhhHHHHHhcCCCCcCc
Q 010207 157 SRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNK 191 (515)
Q Consensus 157 ~~~H~~L~~Il~lvP~a~~~L~~~l~~~FP~~~~~ 191 (515)
..+-.+++.|++-.|.....+.+.+.+.+.....+
T Consensus 405 ~e~i~~i~~i~~~~p~~~~~ii~~L~~~l~~~~~~ 439 (579)
T d2vglb_ 405 QEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEP 439 (579)
T ss_dssp HHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCCSH
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHhcCcH
Confidence 44566899999999999999999999999765444
No 3
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.15 E-value=3.2e+02 Score=22.65 Aligned_cols=68 Identities=15% Similarity=0.066 Sum_probs=37.4
Q ss_pred HHHHHHHHHccccccCccch---HHHHHHHHcCCCc-CCChhHHHHHHHHHHHHHhcccCcHH-----HHHHHHhhcc
Q 010207 65 LETSLKALSGAVSYIDISHH---ESLLVSIFGMSMW-NYDPDVMDALKGLIISLAASNGKYVD-----SCLTMLVSNF 133 (515)
Q Consensus 65 l~~~L~aL~~~Vs~Ld~~~~---~~LV~ail~~~~W-~~~~~~v~~y~~Fl~~Lvsa~~~y~~-----~vl~~LV~~F 133 (515)
...-+.+|...+.-.|+... .+-+..++.. -. ..+++++..-...|++++..++..-. .++..|++.+
T Consensus 34 ~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~-ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL 110 (264)
T d1xqra1 34 REGALELLADLCENMDNAADFCQLSGMHLLVGR-YLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 110 (264)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHT-TTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHH-HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHh
Confidence 34456666666655553311 1334445542 22 34456888888889999877664433 3344555544
No 4
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.71 E-value=1.1e+02 Score=27.01 Aligned_cols=17 Identities=18% Similarity=0.145 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhhh
Q 010207 288 AELLDSLMVLTFEHLES 304 (515)
Q Consensus 288 a~kLD~lm~~lf~~l~~ 304 (515)
.+.++.+|+-+..|+.+
T Consensus 161 ~~~~~~ll~~i~~y~~~ 177 (262)
T d1h2vc1 161 DAEMDRIFANTESYLKR 177 (262)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 46788888888888876
No 5
>d1brwa1 a.46.2.1 (A:1-70) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=12.41 E-value=1.8e+02 Score=19.86 Aligned_cols=59 Identities=5% Similarity=-0.052 Sum_probs=34.6
Q ss_pred HHHHHHHhhcCCchHHHHHHH---HhccCCCCCcchHHHHHHHHHHHHccccccCccchHHHHHHHHc
Q 010207 29 VREALTSVQSGDNDNYNQLVA---VMHLSGRLDPDNRALLETSLKALSGAVSYIDISHHESLLVSIFG 93 (515)
Q Consensus 29 V~~aL~~~~~Gd~~~Y~~L~~---~l~~~~~~~~~~~~~l~~~L~aL~~~Vs~Ld~~~~~~LV~ail~ 93 (515)
++++|.+...|..-.+++... .+-..+. ++.++..+|.+|...=-..+ +-.++++++..
T Consensus 3 ~~eii~k~~~g~~Ls~~E~~~~~~~i~~g~~----s~~qi~afL~al~~kG~t~~--Ei~~~~~aM~~ 64 (70)
T d1brwa1 3 MVDLIAKKRDGKALTKEEIEWIVRGYTNGDI----PDYQMSALAMAIYFRGMTEE--ETAALTMAMVQ 64 (70)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHTTSS----CHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHcCCCHH--HHHHHHHHHHH
Confidence 457788888885544444444 4433322 34678888888877644443 23466666543
No 6
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.29 E-value=3.4e+02 Score=27.75 Aligned_cols=64 Identities=13% Similarity=0.133 Sum_probs=31.0
Q ss_pred HHHHccccccCccchHHHHHHHHcCCCcCCChhHHHHHHHHHHHHHhccc-CcHHHHHHHHhhccC
Q 010207 70 KALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNG-KYVDSCLTMLVSNFT 134 (515)
Q Consensus 70 ~aL~~~Vs~Ld~~~~~~LV~ail~~~~W~~~~~~v~~y~~Fl~~Lvsa~~-~y~~~vl~~LV~~F~ 134 (515)
+.|...-..+|+...+.+|..+++. .=+..+++...-+..++.|+..-+ .-+..++..|...+.
T Consensus 29 ~~l~~~~~~~~~~~~~~i~~~ll~~-L~D~~~~Vq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~l~ 93 (1207)
T d1u6gc_ 29 TELQKDSIKLDDDSERKVVKMILKL-LEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNML 93 (1207)
T ss_dssp HHTSSSCCSCCTTHHHHHHHHHHHH-TTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHhhcccccChHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHhc
Confidence 3333333334444445566666653 113344566666666666654432 233445555555444
No 7
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.70 E-value=4.4e+02 Score=25.00 Aligned_cols=63 Identities=11% Similarity=0.095 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhHcCCChhhhHHHHHhcCCCCcCccccccchhhhHHHHHHhhhccchhhHHHHHHHHHHH
Q 010207 157 SRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVD 227 (515)
Q Consensus 157 ~~~H~~L~~Il~lvP~a~~~L~~~l~~~FP~~~~~~~~~~~h~~Yv~NlL~l~~y~~~p~L~~~il~lIi~ 227 (515)
..+--++......+|.++. ++..+.++|.. ++. .++..-+..+.++---. |+=..++++-|++
T Consensus 443 ~~~iwilGEy~~~i~~~~~-ll~~l~~~f~~--e~~---~vq~~iLta~~Kl~~~~--p~~~~~~~~~vl~ 505 (579)
T d2vglb_ 443 AAMIWIVGEYAERIDNADE-LLESFLEGFHD--EST---QVQLTLLTAIVKLFLKK--PSETQELVQQVLS 505 (579)
T ss_dssp HHHHHHHHTTCTTCTTHHH-HHHHHSTTCSS--SCH---HHHHHHHHHHHHHHTTC--CSTTHHHHHHHHH
T ss_pred HHHHHHHhCcccccccHHH-HHHHHHHhhhh--CCH---HHHHHHHHHHHHHHhcC--cHHHHHHHHHHHh
Confidence 3344556666666776544 55667788875 333 23356677777764332 5544566666665
No 8
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.67 E-value=1.6e+02 Score=28.75 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCCCChhhhhhHHHHHHHHHhh
Q 010207 330 RFATMLADVFVSGLYPPLTRMSAVSYLASFLSR 362 (515)
Q Consensus 330 ~F~~~L~~~~~~~~~~~~~R~aAaaYLaSflAR 362 (515)
.|+..|.+++.+.+.+..+|++|+-||--++.+
T Consensus 35 ~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~ 67 (876)
T d1qgra_ 35 TFLVELSRVLANPGNSQVARVAAGLQIKNSLTS 67 (876)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc
Confidence 599999999999999999999999999888853
No 9
>d1v74b_ a.24.20.1 (B:) Colicin D immunity protein {Escherichia coli [TaxId: 562]}
Probab=10.58 E-value=85 Score=23.37 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.2
Q ss_pred cccCcCChHHHHHHHHHHHHHhh
Q 010207 15 MEDVNISDLELVYHVREALTSVQ 37 (515)
Q Consensus 15 ~~~~~~s~~~~~~~V~~aL~~~~ 37 (515)
.+|-++.+++++++|+..|+++.
T Consensus 64 R~dyElDd~~Lr~EV~~lleK~~ 86 (87)
T d1v74b_ 64 RANYEIDDNGLKVEVRSILEKFK 86 (87)
T ss_dssp CCTTCBCHHHHHHHHHHHHHHTT
T ss_pred hhhcccCHHHHHHHHHHHHHHhc
Confidence 56788999999999999999864
No 10
>d2jm6b1 f.1.4.1 (B:147-308) EAT/MCL-1 (Myeloid cell leukemia sequence 1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.04 E-value=3.9e+02 Score=21.20 Aligned_cols=88 Identities=8% Similarity=0.005 Sum_probs=50.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhccCCccceeeeeeeecCCccchhHHHHHHHHHHHhcCCCChhhhhhHHHHHHHHHhhh
Q 010207 284 GNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRA 363 (515)
Q Consensus 284 ~~~~a~kLD~lm~~lf~~l~~~~~~~~l~~FllFy~cs~~~~~~~~~F~~~L~~~~~~~~~~~~~R~aAaaYLaSflARA 363 (515)
...+++.|.......|.-+-..+. .+|....+.|. ...+.+|....+.--|+.|.-+.|+.||..
T Consensus 48 L~~~g~ele~~~~~~f~~~~~~l~--------------i~~~~~~~~f~-~Va~elf~dG~~NWGRIval~~F~~~la~~ 112 (162)
T d2jm6b1 48 LRRVGDGVQRNHETAFQGMLRKLD--------------IKNEGDVKSFS-RVMVHVFKDGVTNWGRIVTLISFGAFVAKH 112 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSC--------------CSSTTHHHHHH-HHHHHHTTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC--------------CCCccHHHHHH-HHHHHHHcCCCCchHHHHHHHHHHHHHHHH
Confidence 345566666666666665544221 12222223454 556666666666789999999999999864
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHhhh
Q 010207 364 RFLSPCFIVSLLKRLVDWCLEYCNI 388 (515)
Q Consensus 364 k~v~~~~v~~~l~~L~~w~~~Y~~~ 388 (515)
- -..-....+..++.|+..|+.+
T Consensus 113 ~--~~~~~~~~v~~i~~~~~~fl~~ 135 (162)
T d2jm6b1 113 L--KSVNQESFIEPLAETITDVLVR 135 (162)
T ss_dssp H--HHTTCHHHHHHHHHHHHHHHHH
T ss_pred H--HHcCChhHHHHHHHHHHHHHHH
Confidence 2 1111123455666676676653
Done!