Query 010210
Match_columns 515
No_of_seqs 199 out of 923
Neff 8.7
Searched_HMMs 13730
Date Mon Mar 25 22:17:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010210.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010210hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1b7fa1 d.58.7.1 (A:123-204) S 97.8 2.8E-05 2E-09 58.4 8.3 78 188-347 1-80 (82)
2 d2ghpa3 d.58.7.1 (A:206-291) U 97.8 4E-05 2.9E-09 58.1 8.2 37 187-228 2-38 (86)
3 d1x5ua1 d.58.7.1 (A:7-99) Spli 97.8 7.7E-05 5.6E-09 57.4 9.9 78 187-346 7-86 (93)
4 d1x5sa1 d.58.7.1 (A:8-97) Cold 97.8 0.00011 7.9E-09 56.1 10.5 82 188-351 4-87 (90)
5 d1h2vz_ d.58.7.1 (Z:) CBP20, 2 97.7 6.8E-05 5E-09 57.7 9.0 82 187-350 5-88 (93)
6 d1b7fa2 d.58.7.1 (A:205-289) S 97.7 7.3E-05 5.3E-09 56.5 8.8 38 187-230 4-41 (85)
7 d1rk8a_ d.58.7.1 (A:) RNA-bind 97.6 0.00014 9.9E-09 55.3 9.3 39 186-230 4-42 (88)
8 d2cqba1 d.58.7.1 (A:1-89) Pept 97.6 9.4E-05 6.8E-09 56.4 8.3 78 187-346 3-82 (89)
9 d1fxla1 d.58.7.1 (A:37-118) Hu 97.6 0.00014 9.9E-09 54.4 8.9 77 189-347 2-80 (82)
10 d1l3ka1 d.58.7.1 (A:8-91) Nucl 97.6 0.00011 8.3E-09 55.2 8.1 37 188-230 5-41 (84)
11 d2cqga1 d.58.7.1 (A:96-185) TA 97.6 0.00013 9.3E-09 55.8 8.1 38 187-230 6-43 (90)
12 d2cqia1 d.58.7.1 (A:1-90) Nucl 97.5 0.00035 2.5E-08 53.2 10.6 79 187-349 6-86 (90)
13 d1fxla2 d.58.7.1 (A:119-203) H 97.5 0.00023 1.7E-08 53.6 9.0 38 187-230 4-41 (85)
14 d1p1ta_ d.58.7.1 (A:) Cleavage 97.5 0.00014 1E-08 57.2 7.9 80 188-349 7-88 (104)
15 d2ghpa1 d.58.7.1 (A:116-196) U 97.5 0.00026 1.9E-08 52.6 9.1 35 312-346 42-78 (81)
16 d1whwa_ d.58.7.1 (A:) Probable 97.5 0.00038 2.8E-08 54.0 10.2 82 187-350 6-89 (99)
17 d2u2fa_ d.58.7.1 (A:) Splicing 97.5 0.0002 1.4E-08 54.0 8.2 76 190-347 2-79 (85)
18 d1no8a_ d.58.7.1 (A:) Nuclear 97.5 0.00028 2E-08 52.1 8.9 73 192-347 3-77 (78)
19 d2cpza1 d.58.7.1 (A:383-484) C 97.4 0.00044 3.2E-08 54.0 9.8 84 186-351 15-100 (102)
20 d2cq0a1 d.58.7.1 (A:231-320) E 97.4 0.00025 1.8E-08 54.0 7.7 82 187-350 6-89 (90)
21 d1hd0a_ d.58.7.1 (A:) Heteroge 97.3 0.00046 3.3E-08 50.5 8.4 32 192-229 2-33 (75)
22 d1x4ha1 d.58.7.1 (A:8-105) RNA 97.3 0.00077 5.6E-08 51.9 10.2 36 187-228 6-41 (98)
23 d2cqda1 d.58.7.1 (A:1-103) RNA 97.3 0.00055 4E-08 53.5 9.4 37 187-229 8-44 (103)
24 d1whxa_ d.58.7.1 (A:) Probable 97.3 0.00032 2.4E-08 55.6 8.1 33 188-226 9-41 (111)
25 d2cq3a1 d.58.7.1 (A:110-202) R 97.3 0.00092 6.7E-08 51.0 10.3 77 186-346 8-86 (93)
26 d2cpha1 d.58.7.1 (A:454-547) P 97.3 0.00076 5.5E-08 51.7 9.8 81 187-348 6-89 (94)
27 d2cpja1 d.58.7.1 (A:65-150) No 97.3 0.00062 4.5E-08 51.2 9.1 38 314-351 45-84 (86)
28 d2b0ga1 d.58.7.1 (A:1-83) Spli 97.3 0.00093 6.8E-08 49.8 9.8 36 186-227 5-40 (83)
29 d2cqca1 d.58.7.1 (A:109-191) A 97.2 0.00052 3.8E-08 51.2 7.9 37 187-229 7-43 (83)
30 d1cvja1 d.58.7.1 (A:11-90) Pol 97.2 0.00038 2.7E-08 51.7 6.8 34 191-230 2-35 (80)
31 d1cvja2 d.58.7.1 (A:91-179) Po 97.2 0.00062 4.5E-08 51.6 8.1 34 189-228 8-41 (89)
32 d2cpfa1 d.58.7.1 (A:362-446) P 97.2 0.00049 3.6E-08 51.6 7.3 33 192-230 1-33 (85)
33 d1uawa_ d.58.7.1 (A:) Musashi- 97.1 0.00059 4.3E-08 50.2 7.1 34 191-230 2-35 (77)
34 d1x0fa1 d.58.7.1 (A:183-257) N 97.1 0.0006 4.4E-08 49.8 6.9 33 192-230 2-34 (75)
35 d1x4ba1 d.58.7.1 (A:8-110) Het 97.1 0.00097 7E-08 52.0 8.4 38 188-231 19-56 (103)
36 d1zh5a2 d.58.7.1 (A:105-189) L 97.1 0.00039 2.8E-08 52.3 5.8 35 188-228 5-39 (85)
37 d1u6fa1 d.58.7.1 (A:1-139) RNA 97.1 0.0011 8.1E-08 54.7 9.2 77 188-346 41-119 (139)
38 d2cqpa1 d.58.7.1 (A:917-1002) 97.1 0.00068 5E-08 50.9 7.1 29 186-218 6-34 (86)
39 d2adca1 d.58.7.1 (A:335-443) P 97.0 0.0022 1.6E-07 50.3 10.3 35 189-228 2-36 (109)
40 d2msta_ d.58.7.1 (A:) Neural R 97.0 0.0014 9.9E-08 47.7 8.4 35 311-346 39-75 (75)
41 d2ghpa2 d.58.7.1 (A:41-115) U4 97.0 0.00084 6.1E-08 49.0 7.1 33 191-229 2-34 (75)
42 d2adca2 d.58.7.1 (A:444-531) P 97.0 0.0025 1.8E-07 47.9 10.0 33 186-224 7-39 (88)
43 d1nu4a_ d.58.7.1 (A:) Spliceso 97.0 0.00081 5.9E-08 51.1 6.8 40 313-352 46-87 (91)
44 d2disa1 d.58.7.1 (A:8-103) Hyp 96.9 0.0022 1.6E-07 49.1 9.4 34 191-229 3-36 (96)
45 d1x4fa1 d.58.7.1 (A:8-106) Mat 96.9 0.0014 1E-07 50.6 8.0 40 314-353 56-99 (99)
46 d1wf0a_ d.58.7.1 (A:) TAR DNA- 96.9 0.00075 5.4E-08 51.0 6.1 33 187-225 3-35 (88)
47 d2cpda1 d.58.7.1 (A:223-308) A 96.9 0.0037 2.7E-07 46.6 10.0 35 313-347 44-80 (86)
48 d2f9da1 d.58.7.1 (A:12-125) Pr 96.9 0.0033 2.4E-07 49.7 10.1 77 187-348 5-83 (114)
49 d1x4aa1 d.58.7.1 (A:9-103) Spl 96.8 0.0036 2.6E-07 47.7 9.8 37 313-349 53-91 (95)
50 d1wi8a_ d.58.7.1 (A:) Eukaryot 96.8 0.0024 1.8E-07 49.6 8.7 33 188-227 14-46 (104)
51 d1l3ka2 d.58.7.1 (A:103-181) N 96.8 0.0018 1.3E-07 47.5 7.5 36 189-230 2-37 (79)
52 d1x4ga1 d.58.7.1 (A:8-103) Nuc 96.8 0.0058 4.2E-07 46.6 10.6 37 186-228 15-51 (96)
53 d1fjeb1 d.58.7.1 (B:1-91) Nucl 96.8 0.00082 6E-08 51.1 5.3 27 187-217 11-37 (91)
54 d2cq4a1 d.58.7.1 (A:132-232) R 96.7 0.0013 9.2E-08 51.1 6.4 36 189-230 18-53 (101)
55 d2cpxa1 d.58.7.1 (A:291-392) R 96.7 0.0025 1.9E-07 49.2 7.9 38 311-348 58-97 (102)
56 d1whya_ d.58.7.1 (A:) Putative 96.7 0.005 3.7E-07 47.1 9.4 35 187-227 15-49 (97)
57 d1x5ta1 d.58.7.1 (A:8-90) Spli 96.6 0.005 3.6E-07 45.5 9.1 37 311-347 39-77 (83)
58 d2cpea1 d.58.7.1 (A:353-453) R 96.6 0.0047 3.4E-07 47.5 9.2 36 311-346 56-93 (101)
59 d1x4ea1 d.58.7.1 (A:8-79) RNA- 96.6 0.0021 1.5E-07 46.3 6.4 31 192-228 1-31 (72)
60 d2cpia1 d.58.7.1 (A:101-189) E 96.6 0.001 7.3E-08 50.4 4.5 38 187-230 6-46 (89)
61 d2cq1a1 d.58.7.1 (A:51-138) Po 96.5 0.0054 3.9E-07 45.9 8.6 35 186-226 5-39 (88)
62 d1wf2a_ d.58.7.1 (A:) Heteroge 96.5 0.004 2.9E-07 47.8 8.0 37 314-350 51-89 (98)
63 d1wg1a_ d.58.7.1 (A:) Probable 96.5 0.0032 2.3E-07 47.3 7.1 35 314-348 41-77 (88)
64 d2bz2a1 d.58.7.1 (A:35-113) Ne 96.5 0.0091 6.7E-07 43.6 9.3 33 314-346 40-74 (79)
65 d1x5oa1 d.58.7.1 (A:8-108) RNA 96.3 0.0046 3.3E-07 47.7 7.1 36 187-228 16-51 (101)
66 d1weza_ d.58.7.1 (A:) Heteroge 96.2 0.0036 2.6E-07 48.4 6.1 36 186-228 12-47 (102)
67 d1wg5a_ d.58.7.1 (A:) Heteroge 96.2 0.01 7.4E-07 45.9 8.7 28 186-217 12-39 (104)
68 d1wexa_ d.58.7.1 (A:) Heteroge 96.2 0.017 1.2E-06 44.6 10.0 36 186-227 12-47 (104)
69 d2cqha1 d.58.7.1 (A:2-81) IGF- 96.1 0.0083 6E-07 44.0 7.2 35 314-348 38-75 (80)
70 d1x4da1 d.58.7.1 (A:8-96) Matr 95.9 0.013 9.3E-07 43.9 7.5 37 187-228 6-42 (89)
71 d1weya_ d.58.7.1 (A:) Calcipre 95.8 0.028 2.1E-06 43.3 9.6 43 314-357 47-91 (104)
72 d2cpya1 d.58.7.1 (A:536-638) R 95.7 0.0095 6.9E-07 45.9 6.5 29 185-217 4-32 (103)
73 d2adba1 d.58.7.1 (A:177-284) P 95.7 0.0087 6.3E-07 46.7 6.2 34 189-228 7-40 (108)
74 d1u1qa_ d.58.7.1 (A:) Nuclear 95.3 0.02 1.4E-06 48.8 7.7 38 187-230 95-132 (183)
75 d1u1qa_ d.58.7.1 (A:) Nuclear 95.1 0.03 2.2E-06 47.6 8.4 35 189-229 6-40 (183)
76 d1fjca_ d.58.7.1 (A:) Nucleoli 94.6 0.022 1.6E-06 43.1 5.4 35 312-346 52-88 (96)
77 d1wela1 d.58.7.1 (A:412-523) R 94.4 0.014 1E-06 45.7 3.9 27 187-217 16-42 (112)
78 d1wi6a1 d.58.7.1 (A:69-143) Ri 93.5 0.053 3.9E-06 38.8 5.3 39 311-349 31-71 (75)
79 d2cq2a1 d.58.7.1 (A:25-125) Al 93.0 0.2 1.4E-05 38.0 8.2 34 187-226 16-51 (101)
80 d1wg4a_ d.58.7.1 (A:) Splicing 92.2 0.066 4.8E-06 40.5 4.4 36 187-228 13-48 (98)
81 d3begb1 d.58.7.1 (B:121-207) S 91.7 0.058 4.2E-06 39.8 3.4 34 191-230 2-35 (87)
82 d2dita1 d.58.7.1 (A:8-106) HIV 91.7 0.3 2.2E-05 36.7 7.7 55 293-347 29-93 (99)
83 d1o0pa_ d.58.7.1 (A:) Splicing 88.1 0.63 4.6E-05 35.1 7.0 55 293-347 24-94 (104)
84 d1jmta_ d.58.7.3 (A:) d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}
Probab=97.85 E-value=2.8e-05 Score=58.44 Aligned_cols=78 Identities=23% Similarity=0.262 Sum_probs=59.1
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 010210 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (515)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~~ 267 (515)
++.||.|.|||.+++ +++|+++|+++ |.|.++.+++|..
T Consensus 1 s~t~l~V~nLp~~~t----~~~l~~~F~~~--G~v~~~~i~~~~~----------------------------------- 39 (82)
T d1b7fa1 1 SNTNLIVNYLPQDMT----DRELYALFRAI--GPINTCRIMRDYK----------------------------------- 39 (82)
T ss_dssp CCSEEEEECCCTTCC----HHHHHHHHHTT--SCEEEEECCEETT-----------------------------------
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHHh--CCcceeeeeeecc-----------------------------------
Confidence 467899999999987 78999999987 5687776653211
Q ss_pred CCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC--CCceeeee
Q 010210 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSD 345 (515)
Q Consensus 268 rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~ 345 (515)
..++.|.|||+|.+..+|..|.+.++... ...++|+.
T Consensus 40 -----------------------------------------~g~~~g~afV~f~~~~~A~~ai~~lng~~~~g~~l~v~~ 78 (82)
T d1b7fa1 40 -----------------------------------------TGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSY 78 (82)
T ss_dssp -----------------------------------------TTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred -----------------------------------------cCCccccceEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 11345799999999999999999876543 34567777
Q ss_pred CC
Q 010210 346 AP 347 (515)
Q Consensus 346 AP 347 (515)
|.
T Consensus 79 a~ 80 (82)
T d1b7fa1 79 AR 80 (82)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 2
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=97.77 E-value=4e-05 Score=58.14 Aligned_cols=37 Identities=8% Similarity=0.167 Sum_probs=30.5
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 010210 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 228 (515)
...+||.|.|||.+..+ ++.|+++|+++ |.|.++.+.
T Consensus 2 ~e~~~l~V~nLp~~~t~---ed~l~~~F~~~--G~i~~v~i~ 38 (86)
T d2ghpa3 2 LEGREIMIRNLSTELLD---ENLLRESFEGF--GSIEKINIP 38 (86)
T ss_dssp CTTTEEEEEEECTTTCC---HHHHHHHHGGG--SCEEEEECC
T ss_pred CCCCEEEEECCCCCccc---HHHHHHHHHhh--hhccceeee
Confidence 34789999999999876 67799999997 678887654
No 3
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.77 E-value=7.7e-05 Score=57.42 Aligned_cols=78 Identities=17% Similarity=0.108 Sum_probs=60.6
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 010210 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~ 266 (515)
..++||.|.|||.+++ +++|+++|+++ |.|.++.+++|-.
T Consensus 7 ~~~~tlfV~nLp~~~t----~~~l~~~F~~~--G~v~~v~~~~d~~---------------------------------- 46 (93)
T d1x5ua1 7 NQDATVYVGGLDEKVS----EPLLWELFLQA--GPVVNTHMPKDRV---------------------------------- 46 (93)
T ss_dssp CTTTEEEEECCCTTCC----HHHHHHHHHTT--SCEEEEECCBCSS----------------------------------
T ss_pred CCCCEEEEeCCCCcCC----HHHHHHHHHHh--CCccccceeeccc----------------------------------
Confidence 4578999999999997 79999999987 5788887665410
Q ss_pred CCCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC--CCceeee
Q 010210 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVS 344 (515)
Q Consensus 267 ~rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~ 344 (515)
.....|.|||+|.+..+|..|.+.++... ...++|+
T Consensus 47 ------------------------------------------tg~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 84 (93)
T d1x5ua1 47 ------------------------------------------TGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 84 (93)
T ss_dssp ------------------------------------------SCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred ------------------------------------------ccccccceEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 11345799999999999999999876543 3467788
Q ss_pred eC
Q 010210 345 DA 346 (515)
Q Consensus 345 ~A 346 (515)
.|
T Consensus 85 ~A 86 (93)
T d1x5ua1 85 KA 86 (93)
T ss_dssp ET
T ss_pred Ec
Confidence 76
No 4
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.75 E-value=0.00011 Score=56.11 Aligned_cols=82 Identities=16% Similarity=0.207 Sum_probs=61.4
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 010210 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (515)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~~ 267 (515)
.+++|.|.|||.+++ +++|+++|+++ |.|.++.+.++..
T Consensus 4 ~~~kifV~nLp~~~t----~~~l~~~F~~~--G~i~~~~~~~~~~----------------------------------- 42 (90)
T d1x5sa1 4 DEGKLFVGGLSFDTN----EQSLEQVFSKY--GQISEVVVVKDRE----------------------------------- 42 (90)
T ss_dssp CCSEEEEESCCTTCC----HHHHHHHHHHH--SCCCEEEECCCSS-----------------------------------
T ss_pred CCCEEEEECCCCcCC----HHHHHHhhhcc--ccccceeeccccc-----------------------------------
Confidence 467899999999987 79999999997 5677765432111
Q ss_pred CCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC--CCceeeee
Q 010210 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSD 345 (515)
Q Consensus 268 rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~ 345 (515)
...+.|.|||+|.+..+|..|.+.++... ...++|+.
T Consensus 43 -----------------------------------------~~~~~g~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~V~~ 81 (90)
T d1x5sa1 43 -----------------------------------------TQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 81 (90)
T ss_dssp -----------------------------------------SCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred -----------------------------------------cccccceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 11345899999999999999998776543 34677888
Q ss_pred CCCCCc
Q 010210 346 APESRE 351 (515)
Q Consensus 346 AP~P~D 351 (515)
|..+.|
T Consensus 82 a~~~~~ 87 (90)
T d1x5sa1 82 AGKSSD 87 (90)
T ss_dssp EECCCC
T ss_pred cCCCCC
Confidence 866654
No 5
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.73 E-value=6.8e-05 Score=57.73 Aligned_cols=82 Identities=15% Similarity=0.148 Sum_probs=62.3
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 010210 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~ 266 (515)
..+.||.|.|||.+++ +++|+++|+++ |.|.++.+++|..
T Consensus 5 ~~s~tlfV~nlp~~~t----e~~l~~~F~~~--G~i~~v~i~~~~~---------------------------------- 44 (93)
T d1h2vz_ 5 KKSCTLYVGNLSFYTT----EEQIYELFSKS--GDIKKIIMGLDKM---------------------------------- 44 (93)
T ss_dssp TTCCEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEECTT----------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHH--CCcceeccccccc----------------------------------
Confidence 3567999999999886 79999999987 5788888764321
Q ss_pred CCCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC--CCceeee
Q 010210 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVS 344 (515)
Q Consensus 267 ~rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~ 344 (515)
...+.|.|||+|.+..+|..|.+.++... ...++|+
T Consensus 45 ------------------------------------------~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~gr~i~V~ 82 (93)
T d1h2vz_ 45 ------------------------------------------KKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 82 (93)
T ss_dssp ------------------------------------------TCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred ------------------------------------------cccccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 01234799999999999999999876542 3456788
Q ss_pred eCCCCC
Q 010210 345 DAPESR 350 (515)
Q Consensus 345 ~AP~P~ 350 (515)
.|+.+.
T Consensus 83 ~a~~~~ 88 (93)
T d1h2vz_ 83 WDAGFK 88 (93)
T ss_dssp EESCCC
T ss_pred EcCCCC
Confidence 776543
No 6
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}
Probab=97.71 E-value=7.3e-05 Score=56.46 Aligned_cols=38 Identities=16% Similarity=0.333 Sum_probs=31.7
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010210 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
.+..+|.|.|||.+++ +++|+++|+++ |.|.++.+.+|
T Consensus 4 ~~~t~lfV~nlp~~~t----e~~l~~~F~~~--G~i~~~~~~~d 41 (85)
T d1b7fa2 4 IKDTNLYVTNLPRTIT----DDQLDTIFGKY--GSIVQKNILRD 41 (85)
T ss_dssp TTTCEEEEESCCTTCC----HHHHHHHHTSS--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhh--CCEeeeeeecc
Confidence 4567899999999986 79999999986 67888887754
No 7
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=97.63 E-value=0.00014 Score=55.31 Aligned_cols=39 Identities=5% Similarity=0.172 Sum_probs=32.1
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010210 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 4 s~~~~~l~V~nL~~~~t----~~~l~~~F~~~--G~i~~v~i~~d 42 (88)
T d1rk8a_ 4 SVEGWILFVTSIHEEAQ----EDEIQEKFCDY--GEIKNIHLNLD 42 (88)
T ss_dssp CC-CEEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHHc--CCccccccccc
Confidence 45679999999999987 79999999987 67888887754
No 8
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.63 E-value=9.4e-05 Score=56.38 Aligned_cols=78 Identities=19% Similarity=0.163 Sum_probs=59.2
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 010210 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~ 266 (515)
.+.+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|-.
T Consensus 3 ~~~~tlfV~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~d~~---------------------------------- 42 (89)
T d2cqba1 3 TTKRVLYVGGLAEEVD----DKVLHAAFIPF--GDITDIQIPLDYE---------------------------------- 42 (89)
T ss_dssp CCCSCEEEESCCSSCC----HHHHHHHHTTT--SCCCCEECCCCSS----------------------------------
T ss_pred CCCcEEEEeCCCCcCC----HHHHHHHHhhC--CeEEecccccccc----------------------------------
Confidence 4578999999999987 79999999986 5677776653221
Q ss_pred CCCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC--CCceeee
Q 010210 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVS 344 (515)
Q Consensus 267 ~rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~ 344 (515)
..++.|.|||+|.+..+|..|.+.++... ...+.++
T Consensus 43 ------------------------------------------~~~~kg~afV~f~~~~~A~~ai~~l~~~~i~g~~l~v~ 80 (89)
T d2cqba1 43 ------------------------------------------TEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 80 (89)
T ss_dssp ------------------------------------------SCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred ------------------------------------------cccccceeEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 11345899999999999999998876442 3456777
Q ss_pred eC
Q 010210 345 DA 346 (515)
Q Consensus 345 ~A 346 (515)
.|
T Consensus 81 ~a 82 (89)
T d2cqba1 81 LA 82 (89)
T ss_dssp EC
T ss_pred Ee
Confidence 77
No 9
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.61 E-value=0.00014 Score=54.41 Aligned_cols=77 Identities=23% Similarity=0.270 Sum_probs=58.5
Q ss_pred cceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 010210 189 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTR 268 (515)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~~r 268 (515)
..||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|...
T Consensus 2 ~t~l~V~nLp~~~t----e~~l~~~f~~~--G~v~~v~i~~~~~~----------------------------------- 40 (82)
T d1fxla1 2 KTNLIVNYLPQNMT----QEEFRSLFGSI--GEIESCKLVRDKIT----------------------------------- 40 (82)
T ss_dssp CSEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEEECTTT-----------------------------------
T ss_pred CCEEEEECCCCCCC----HHHHHHHHHHh--CCcccccceeeccC-----------------------------------
Confidence 35799999999987 79999999996 57888877754220
Q ss_pred CccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC--CCceeeeeC
Q 010210 269 PTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDA 346 (515)
Q Consensus 269 p~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~A 346 (515)
.+..|.|||+|.+..+|..|.+.+.... ...++++.|
T Consensus 41 -----------------------------------------~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~A 79 (82)
T d1fxla1 41 -----------------------------------------GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 79 (82)
T ss_dssp -----------------------------------------CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred -----------------------------------------CCceeeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 1235799999999999999998776542 335677777
Q ss_pred C
Q 010210 347 P 347 (515)
Q Consensus 347 P 347 (515)
.
T Consensus 80 k 80 (82)
T d1fxla1 80 R 80 (82)
T ss_dssp C
T ss_pred e
Confidence 3
No 10
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.58 E-value=0.00011 Score=55.23 Aligned_cols=37 Identities=19% Similarity=0.217 Sum_probs=32.1
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010210 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
+.++|.|.|||.+++ +++|+++|+++ |+|.++.+.+|
T Consensus 5 ~~~~lfV~nlp~~~t----e~~l~~~F~~~--G~i~~v~i~~d 41 (84)
T d1l3ka1 5 QLRKLFIGGLSFETT----DESLRSHFEQW--GTLTDCVVMRD 41 (84)
T ss_dssp GGGEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCcEEEEECCCCCCC----HHHHHHHHHhh--ccccceeeccc
Confidence 468999999999997 79999999987 68888888765
No 11
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.55 E-value=0.00013 Score=55.75 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=32.3
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010210 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
...++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 6 ~~~~~lfV~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~d 43 (90)
T d2cqga1 6 QKTSDLIVLGLPWKTT----EQDLKEYFSTF--GEVLMVQVKKD 43 (90)
T ss_dssp CCCCCEEEESCCSSCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred cCCCeEEEECCCCCCC----HHHHHHHHHhh--cccceeeeccC
Confidence 3568999999999987 79999999997 68888888754
No 12
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.54 E-value=0.00035 Score=53.15 Aligned_cols=79 Identities=16% Similarity=0.100 Sum_probs=59.8
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 010210 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~ 266 (515)
...+||.|.|||.+++ +++|+++|+++ |.|.++.+.+|..
T Consensus 6 ~~~~tl~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~d~~---------------------------------- 45 (90)
T d2cqia1 6 GQPRTLYVGNLSRDVT----EVLILQLFSQI--GPCKSCKMITEHT---------------------------------- 45 (90)
T ss_dssp CCCCEEEEESCCTTCC----HHHHHHHHHHH--SCEEEEEEECCCC----------------------------------
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHHhc--CCceeeeeecccC----------------------------------
Confidence 5578999999999987 79999999998 5687777653211
Q ss_pred CCCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC--CCceeee
Q 010210 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVS 344 (515)
Q Consensus 267 ~rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~ 344 (515)
...|.|||+|.+..+|..|.+.++... ...++++
T Consensus 46 --------------------------------------------~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 81 (90)
T d2cqia1 46 --------------------------------------------SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 81 (90)
T ss_dssp --------------------------------------------SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred --------------------------------------------ccceeeEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 113689999999999999998776542 3456777
Q ss_pred eCCCC
Q 010210 345 DAPES 349 (515)
Q Consensus 345 ~AP~P 349 (515)
.|=.|
T Consensus 82 ~a~~~ 86 (90)
T d2cqia1 82 WATTP 86 (90)
T ss_dssp ECCCT
T ss_pred EcCCC
Confidence 77433
No 13
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.51 E-value=0.00023 Score=53.60 Aligned_cols=38 Identities=13% Similarity=0.297 Sum_probs=31.8
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010210 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
..+.+|.|.|||.+++ +++|+++|+++ |.|.++.+.+|
T Consensus 4 ~k~~~lfV~nLp~~~t----e~~L~~~F~~~--G~v~~v~i~~d 41 (85)
T d1fxla2 4 IRDANLYVSGLPKTMT----QKELEQLFSQY--GRIITSRILVD 41 (85)
T ss_dssp GTTCEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHh--CCccccccccc
Confidence 4467899999999987 79999999987 67888887754
No 14
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.50 E-value=0.00014 Score=57.16 Aligned_cols=80 Identities=19% Similarity=0.248 Sum_probs=60.9
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 010210 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (515)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~~ 267 (515)
+.+||.|.|||.+++ +++|+++|+++ |.|.++.+.+|-..
T Consensus 7 ~~rtl~V~nLp~~~t----e~~l~~~f~~~--G~i~~v~i~~~~~t---------------------------------- 46 (104)
T d1p1ta_ 7 SLRSVFVGNIPYEAT----EEQLKDIFSEV--GPVVSFRLVYDRET---------------------------------- 46 (104)
T ss_dssp HHSCEEEESCCTTSC----HHHHHHHHHTT--SCCSEEEEEEETTT----------------------------------
T ss_pred CCCEEEEECCCCcCC----HHHHHHhhhcc--ccccccccccccce----------------------------------
Confidence 468999999999987 79999999986 67888887754210
Q ss_pred CCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC--CCceeeee
Q 010210 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSD 345 (515)
Q Consensus 268 rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~ 345 (515)
.++.|.|||+|.+..+|..|.+.+.... ...+.|+.
T Consensus 47 ------------------------------------------g~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~i~V~~ 84 (104)
T d1p1ta_ 47 ------------------------------------------GKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp ------------------------------------------TEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred ------------------------------------------eccCCceEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 1234789999999999999998875432 34567887
Q ss_pred CCCC
Q 010210 346 APES 349 (515)
Q Consensus 346 AP~P 349 (515)
|..+
T Consensus 85 a~~~ 88 (104)
T d1p1ta_ 85 AASE 88 (104)
T ss_dssp TTCT
T ss_pred CCCC
Confidence 7543
No 15
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=97.49 E-value=0.00026 Score=52.64 Aligned_cols=35 Identities=17% Similarity=-0.004 Sum_probs=26.6
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccCC--CCceeeeeC
Q 010210 312 QLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDA 346 (515)
Q Consensus 312 ~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~A 346 (515)
+.|.|||+|.+.++|..|.+.++... ...++|+.|
T Consensus 42 ~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~i~V~~a 78 (81)
T d2ghpa1 42 SRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 78 (81)
T ss_dssp -CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ccceeEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 45789999999999999998876543 345666665
No 16
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.48 E-value=0.00038 Score=53.96 Aligned_cols=82 Identities=18% Similarity=0.156 Sum_probs=60.1
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 010210 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~ 266 (515)
....+|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 6 ~~~~~lfV~nL~~~~t----~~~l~~~F~~~--g~v~~v~i~~d~~---------------------------------- 45 (99)
T d1whwa_ 6 SGSGRLFVRNLSYTSS----EEDLEKLFSAY--GPLSELHYPIDSL---------------------------------- 45 (99)
T ss_dssp CSCEEEEEECCCTTCC----HHHHHHHHHTT--SCEEEEECCCCTT----------------------------------
T ss_pred CCCCEEEEECCCCcCC----HHHHHHHHHhc--CCceeeeeccccc----------------------------------
Confidence 4466899999999887 79999999986 5677776543221
Q ss_pred CCCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccC--CCCceeee
Q 010210 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 344 (515)
Q Consensus 267 ~rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~--~~~~~~v~ 344 (515)
...+.|.|||+|++..+|..|.+.++.. ....++|+
T Consensus 46 ------------------------------------------tg~~~g~afV~f~~~~~a~~A~~~l~g~~~~gr~i~V~ 83 (99)
T d1whwa_ 46 ------------------------------------------TKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp ------------------------------------------TCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred ------------------------------------------ccccCcceEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 1134689999999999999999877543 23456777
Q ss_pred eCCCCC
Q 010210 345 DAPESR 350 (515)
Q Consensus 345 ~AP~P~ 350 (515)
.|-...
T Consensus 84 ~a~~~~ 89 (99)
T d1whwa_ 84 PSTIKK 89 (99)
T ss_dssp ECCCCS
T ss_pred ECCCCC
Confidence 775443
No 17
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.47 E-value=0.0002 Score=53.98 Aligned_cols=76 Identities=14% Similarity=0.190 Sum_probs=59.2
Q ss_pred ceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q 010210 190 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTRP 269 (515)
Q Consensus 190 ~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~~rp 269 (515)
+.|.|.|||.+.+ +++|+++|+++ |+|.++.+.+|-.
T Consensus 2 ~rlfV~nlp~~~t----e~~l~~~F~~~--G~v~~v~i~~d~~------------------------------------- 38 (85)
T d2u2fa_ 2 HKLFIGGLPNYLN----DDQVKELLTSF--GPLKAFNLVKDSA------------------------------------- 38 (85)
T ss_dssp CCEEEETCCSSCC----SHHHHHHHTSS--SCEEEEEEECCCS-------------------------------------
T ss_pred CEEEEECCCCCCC----HHHHHHHHHhc--CccceEEeecccc-------------------------------------
Confidence 5699999999998 69999999986 5688888775421
Q ss_pred ccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC--CCceeeeeCC
Q 010210 270 TIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAP 347 (515)
Q Consensus 270 ~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~AP 347 (515)
..+..|.|||+|.+..+|..|.+.++... ...+.|+.|.
T Consensus 39 ---------------------------------------tg~~rg~aFV~f~~~~~A~~a~~~l~~~~l~g~~l~V~~A~ 79 (85)
T d2u2fa_ 39 ---------------------------------------TGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 79 (85)
T ss_dssp ---------------------------------------SSCCCCEEEEEESSSHHHHHHHHTSSSCCCSSSCCEEEECC
T ss_pred ---------------------------------------ccccceeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 11346899999999999999999876543 3467788775
No 18
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.47 E-value=0.00028 Score=52.12 Aligned_cols=73 Identities=18% Similarity=0.217 Sum_probs=55.2
Q ss_pred EEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCcc
Q 010210 192 VLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTRPTI 271 (515)
Q Consensus 192 VlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~~rp~~ 271 (515)
+.|.|||.+.+ +++|+++|+++ |.|.++.+.+|-
T Consensus 3 l~V~nLp~~~~----~~~l~~~F~~~--G~v~~~~i~~~~---------------------------------------- 36 (78)
T d1no8a_ 3 LLVSNLDFGVS----DADIQELFAEF--GTLKKAAVHYDR---------------------------------------- 36 (78)
T ss_dssp EEEESCCTTCC----HHHHHHHHHHH--SCEEEEEESCSS----------------------------------------
T ss_pred EEEECCCCCCC----HHHHHHHHHHh--CCCeEEEEEEee----------------------------------------
Confidence 78999999976 79999999998 568777665321
Q ss_pred ccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC--CCceeeeeCC
Q 010210 272 KTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAP 347 (515)
Q Consensus 272 r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~AP 347 (515)
..++.|.|||+|++..+|..|.+.++... ...++|+.|.
T Consensus 37 -------------------------------------~g~~~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~l~V~~a~ 77 (78)
T d1no8a_ 37 -------------------------------------SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 77 (78)
T ss_dssp -------------------------------------CCCSCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred -------------------------------------ccccceeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 11345899999999999999999876542 3356676664
No 19
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.41 E-value=0.00044 Score=53.96 Aligned_cols=84 Identities=14% Similarity=0.180 Sum_probs=62.6
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 010210 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 265 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~ 265 (515)
.+...+|.|.|||.+++ +++|+++|+++ |.+.++.+.+|..
T Consensus 15 ~p~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~~~~~~~~~--------------------------------- 55 (102)
T d2cpza1 15 GPEGANLFIYHLPQEFG----DQDLLQMFMPF--GNVVSAKVFIDKQ--------------------------------- 55 (102)
T ss_dssp CSTTCCEEEESCCSSCC----HHHHHHHHGGG--SCCSEEEEEECSS---------------------------------
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhh--ccccccceeeecc---------------------------------
Confidence 35667899999999987 79999999987 5677776664411
Q ss_pred CCCCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccC--CCCceee
Q 010210 266 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTV 343 (515)
Q Consensus 266 ~~rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~--~~~~~~v 343 (515)
..+..|.|||+|++..+|..|.+.++.. ....++|
T Consensus 56 -------------------------------------------~g~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~~i~V 92 (102)
T d2cpza1 56 -------------------------------------------TNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 92 (102)
T ss_dssp -------------------------------------------SCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred -------------------------------------------cCCCccceEEEeCCHHHHHHHHHHhCCCEECCEEEEE
Confidence 0123489999999999999999887654 2346778
Q ss_pred eeCCCCCc
Q 010210 344 SDAPESRE 351 (515)
Q Consensus 344 ~~AP~P~D 351 (515)
+.|-..+|
T Consensus 93 ~~a~~k~~ 100 (102)
T d2cpza1 93 QLKRSKND 100 (102)
T ss_dssp ECCCCSCC
T ss_pred EEeCCCCC
Confidence 88755443
No 20
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.36 E-value=0.00025 Score=53.97 Aligned_cols=82 Identities=17% Similarity=0.203 Sum_probs=61.7
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 010210 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~ 266 (515)
....||.|.|||.+++ +++|+++|+++ |.|.++.+.+|-.
T Consensus 6 ~~~~~i~V~nLp~~~t----~~~l~~~f~~~--G~v~~v~i~~d~~---------------------------------- 45 (90)
T d2cq0a1 6 DDNATIRVTNLSEDTR----ETDLQELFRPF--GSISRIYLAKDKT---------------------------------- 45 (90)
T ss_dssp SSSEEEEEESCCTTCC----HHHHHTTSTTT--CCEEEEEEEECSS----------------------------------
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHHHh--ccccccccccccc----------------------------------
Confidence 3467999999999987 78999999886 6788887764321
Q ss_pred CCCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccC--CCCceeee
Q 010210 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 344 (515)
Q Consensus 267 ~rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~--~~~~~~v~ 344 (515)
..+..|.|||+|.+..+|..|.+.++.. ....++|+
T Consensus 46 ------------------------------------------t~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~ 83 (90)
T d2cq0a1 46 ------------------------------------------TGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 83 (90)
T ss_dssp ------------------------------------------SCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred ------------------------------------------ccccccceeEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 0123479999999999999999987643 23457788
Q ss_pred eCCCCC
Q 010210 345 DAPESR 350 (515)
Q Consensus 345 ~AP~P~ 350 (515)
.|-+.+
T Consensus 84 ~akp~~ 89 (90)
T d2cq0a1 84 WAKPST 89 (90)
T ss_dssp ESSCCC
T ss_pred eeeCCC
Confidence 886443
No 21
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.32 E-value=0.00046 Score=50.50 Aligned_cols=32 Identities=13% Similarity=0.229 Sum_probs=26.8
Q ss_pred EEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 010210 192 VLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (515)
Q Consensus 192 VlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 229 (515)
|.|.|||.+++ +++|+++|+++ |.|.++.+++
T Consensus 2 lfV~nl~~~~t----e~~l~~~F~~~--G~i~~~~i~~ 33 (75)
T d1hd0a_ 2 MFIGGLSWDTT----KKDLKDYFSKF--GEVVDCTLKL 33 (75)
T ss_dssp EEEECCCTTCC----HHHHHHHHHTT--SCEEEEECCC
T ss_pred EEEeCCCCcCC----HHHHHHHHHhh--cccccccccc
Confidence 67999999987 79999999987 6788877653
No 22
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.32 E-value=0.00077 Score=51.92 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=28.7
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 010210 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 228 (515)
...+||.|.|||.+.+ +++|+++|+++ |.+.++.+.
T Consensus 6 ~~~~tlfV~nLp~~~t----e~~l~~~f~~~--G~v~~~~~~ 41 (98)
T d1x4ha1 6 TEGKTVFIRNLSFDSE----EEALGEVLQQF--GDLKYVRVV 41 (98)
T ss_dssp CCCCCEEEESCCTTCC----HHHHHHHHHTT--SCEEEEECC
T ss_pred CCCCEEEEcCCCCcCC----HHHHHHHHhcc--ccceeeeec
Confidence 4468999999999987 79999999987 456555543
No 23
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.32 E-value=0.00055 Score=53.46 Aligned_cols=37 Identities=19% Similarity=0.361 Sum_probs=30.5
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 010210 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 229 (515)
...++|.|.|||.+++ +++|+++|+++ |.|.++.+++
T Consensus 8 ~~~~~lfV~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~ 44 (103)
T d2cqda1 8 TTFTKIFVGGLPYHTT----DASLRKYFEGF--GDIEEAVVIT 44 (103)
T ss_dssp CSSSEEEEECCCSSCC----HHHHHHHHHTT--SCEEEEEESC
T ss_pred CCCcEEEEeCCCCcCc----HHHHHHHHhhc--ccccceeccc
Confidence 4556799999999887 79999999986 6788887654
No 24
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.31 E-value=0.00032 Score=55.55 Aligned_cols=33 Identities=15% Similarity=0.343 Sum_probs=27.4
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEE
Q 010210 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSM 226 (515)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~ 226 (515)
+.+||.|.|||.+++ +++|+++|+++ |.|.++.
T Consensus 9 ~~~~l~V~nLp~~~t----~~~L~~~F~~f--G~I~~v~ 41 (111)
T d1whxa_ 9 SKTVILAKNLPAGTL----AAEIQETFSRF--GSLGRVL 41 (111)
T ss_dssp EEEEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEE
T ss_pred CCCEEEEECCCCCCC----HHHHHhhhhcc--CCccEEE
Confidence 568999999999877 78899999886 5676654
No 25
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.30 E-value=0.00092 Score=51.03 Aligned_cols=77 Identities=17% Similarity=0.257 Sum_probs=59.2
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 010210 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 265 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~ 265 (515)
....++|.|.|||.+++ +++|+++|+++ |.|.++.+.+|.+
T Consensus 8 ~~~~~~l~v~nLp~~~t----~~~L~~~F~~~--G~v~~v~~~~~~~--------------------------------- 48 (93)
T d2cq3a1 8 KSTPKRLHVSNIPFRFR----DPDLRQMFGQF--GKILDVEIIFNER--------------------------------- 48 (93)
T ss_dssp SCCCCEEEEESCCTTCC----HHHHHHHGGGT--SCEEEEEEECCTT---------------------------------
T ss_pred CCCCCEEEEECCCCCCC----HHHHHHHHhhc--ceeeecccccccc---------------------------------
Confidence 46678999999999887 79999999987 5677776653211
Q ss_pred CCCCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC--CCceee
Q 010210 266 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTV 343 (515)
Q Consensus 266 ~~rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v 343 (515)
.+.|.|||+|++..+|..|.+.++... ...++|
T Consensus 49 ---------------------------------------------~~kg~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~V 83 (93)
T d2cq3a1 49 ---------------------------------------------GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 83 (93)
T ss_dssp ---------------------------------------------TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred ---------------------------------------------CCcceeEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 134799999999999999998776542 345677
Q ss_pred eeC
Q 010210 344 SDA 346 (515)
Q Consensus 344 ~~A 346 (515)
+.|
T Consensus 84 ~~A 86 (93)
T d2cq3a1 84 NNA 86 (93)
T ss_dssp EEC
T ss_pred Eec
Confidence 776
No 26
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.30 E-value=0.00076 Score=51.66 Aligned_cols=81 Identities=15% Similarity=0.183 Sum_probs=59.8
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 010210 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~ 266 (515)
....+|.|.|||.+++ +++|+++|+++ |.|.++.+.+|...
T Consensus 6 ~~~~~l~V~nLp~~~~----e~~l~~~F~~~--G~i~~v~i~~~~~~--------------------------------- 46 (94)
T d2cpha1 6 QTTSKILVRNIPFQAN----QREIRELFSTF--GELKTVRLPKKMTG--------------------------------- 46 (94)
T ss_dssp SCCCCEEEESCCTTCC----HHHHHHHHHTT--SCEEEEECCCCCSS---------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHh--CCceEEEEEecccc---------------------------------
Confidence 4567899999999977 79999999986 57877766522110
Q ss_pred CCCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhc-cC--CCCceee
Q 010210 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLH-AQ--LVDTWTV 343 (515)
Q Consensus 267 ~rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~-~~--~~~~~~v 343 (515)
..++.|.|||+|.+..+|..|.+.+. .. ....+.|
T Consensus 47 ------------------------------------------~g~~rg~afV~f~~~~~A~~Ai~~l~~~~~~~Gr~l~V 84 (94)
T d2cpha1 47 ------------------------------------------TGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 84 (94)
T ss_dssp ------------------------------------------SCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred ------------------------------------------CCCcccEEEEEECCHHHHHHHHHHccCCcEECCEEEEE
Confidence 11346899999999999999999873 32 2346778
Q ss_pred eeCCC
Q 010210 344 SDAPE 348 (515)
Q Consensus 344 ~~AP~ 348 (515)
+.|-+
T Consensus 85 ~~A~~ 89 (94)
T d2cpha1 85 EWADS 89 (94)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 87743
No 27
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.30 E-value=0.00062 Score=51.23 Aligned_cols=38 Identities=21% Similarity=0.109 Sum_probs=31.3
Q ss_pred ceEEEEeCCHHHHHHHHHHhccCC--CCceeeeeCCCCCc
Q 010210 314 GAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPESRE 351 (515)
Q Consensus 314 ~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~AP~P~D 351 (515)
+.|||+|++..+|..|.+.++... ...++|+.|+++..
T Consensus 45 ~~afV~f~~~~~A~~A~~~l~g~~i~g~~l~V~~A~~~~~ 84 (86)
T d2cpja1 45 GFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSAS 84 (86)
T ss_dssp TEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSC
T ss_pred ceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCcCC
Confidence 589999999999999999876543 34678999988764
No 28
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}
Probab=97.26 E-value=0.00093 Score=49.79 Aligned_cols=36 Identities=14% Similarity=0.339 Sum_probs=29.6
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEE
Q 010210 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i 227 (515)
.|..+||.|.|||.+++ +++|+++|+++ |.|.++.+
T Consensus 5 ~pP~~tl~V~nLp~~~t----~~~l~~~f~~~--G~i~~v~~ 40 (83)
T d2b0ga1 5 QPPNQILFLTNLPEETN----EMMLSMLFNQF--PGFKEVRL 40 (83)
T ss_dssp CSCCSEEEEESCCTTCC----HHHHHHHHTTS--TTEEEEEE
T ss_pred CCCCCEEEEECCCCCCC----HHHHHhhhccC--ccEEEeee
Confidence 46789999999999987 78999999886 56766644
No 29
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.22 E-value=0.00052 Score=51.21 Aligned_cols=37 Identities=11% Similarity=0.073 Sum_probs=31.0
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 010210 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 229 (515)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 7 ~~~~~l~V~nL~~~~t----e~~l~~~F~~~--G~i~~v~i~~ 43 (83)
T d2cqca1 7 DPNCCLGVFGLSLYTT----ERDLREVFSKY--GPIADVSIVY 43 (83)
T ss_dssp CGGGCEEEESCCSSCC----HHHHHHHHHTT--SCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHh--CCCccccccc
Confidence 4578999999999987 79999999987 5788887754
No 30
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.20 E-value=0.00038 Score=51.67 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=28.8
Q ss_pred eEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010210 191 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 191 TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
++.|.|||.+++ +++|+++|+++ |.|.++.+.+|
T Consensus 2 slfV~nL~~~~t----e~~l~~~F~~~--G~i~~v~i~~d 35 (80)
T d1cvja1 2 SLYVGDLHPDVT----EAMLYEKFSPA--GPILSIRVCRD 35 (80)
T ss_dssp EEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred EEEEeCCCCcCC----HHHHHHHHHHh--CCEeEEEEEec
Confidence 589999999886 79999999987 57888887754
No 31
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.19 E-value=0.00062 Score=51.56 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=28.0
Q ss_pred cceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 010210 189 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 228 (515)
..+|.|.|||.+++ +++|+++|+++ |.|.++.+.
T Consensus 8 ~~~l~V~nLp~~~t----~~~l~~~F~~~--G~v~~~~i~ 41 (89)
T d1cvja2 8 VGNIFIKNLDKSID----NKALYDTFSAF--GNILSCKVV 41 (89)
T ss_dssp TTEEEEESCCSSCC----HHHHHHHHHTT--SCEEEEEEC
T ss_pred CCEEEEeCCCCCCC----HHHHHHHHHhc--CCceEEEEE
Confidence 45899999999987 79999999987 567776654
No 32
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.17 E-value=0.00049 Score=51.60 Aligned_cols=33 Identities=9% Similarity=0.270 Sum_probs=27.7
Q ss_pred EEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010210 192 VLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 192 VlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
+.|.|||.+++ +++|+++|+++ |.|.++.+.+|
T Consensus 1 LfV~nLp~~~t----~~~l~~~F~~~--G~v~~v~i~~~ 33 (85)
T d2cpfa1 1 LFIKNLNFSTT----EETLKGVFSKV--GAIKSCTISKK 33 (85)
T ss_dssp EEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEEEE
T ss_pred CEEcCCCCCCC----HHHHHHHHHHh--CCccccceecc
Confidence 57999999987 79999999986 67888887643
No 33
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.12 E-value=0.00059 Score=50.20 Aligned_cols=34 Identities=15% Similarity=0.313 Sum_probs=28.1
Q ss_pred eEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010210 191 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 191 TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
.|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 2 klfV~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~d 35 (77)
T d1uawa_ 2 KMFIGGLSWQTT----QEGLREYFGQF--GEVKECLVMRD 35 (77)
T ss_dssp CEEEESCCSSCC----SHHHHHHHTTT--SCCCCEEEECC
T ss_pred EEEEeCCCCcCC----HHHHHHHHHHh--CCcceeeeecc
Confidence 588999999987 58899999986 67888877644
No 34
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.10 E-value=0.0006 Score=49.85 Aligned_cols=33 Identities=15% Similarity=0.267 Sum_probs=27.7
Q ss_pred EEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010210 192 VLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 192 VlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
|.|.|||.+++ +++|+++|+++ |.|.++.+..|
T Consensus 2 lfVgnLp~~~t----e~~l~~~F~~~--G~I~~v~i~~d 34 (75)
T d1x0fa1 2 IFVGGLSPDTP----EEKIREYFGGF--GEVESIELPMD 34 (75)
T ss_dssp EEEESCCSSCC----HHHHHHHHHHH--SCEEEEECCCC
T ss_pred EEEcCCCCCCC----HHHHHHHHHHh--CCccccccccc
Confidence 68999999987 79999999997 67888876533
No 35
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.08 E-value=0.00097 Score=52.01 Aligned_cols=38 Identities=13% Similarity=0.239 Sum_probs=32.1
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCc
Q 010210 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (515)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~ 231 (515)
..++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|.
T Consensus 19 ~~~~lfVgnLp~~~t----e~~L~~~F~~~--G~i~~~~i~~d~ 56 (103)
T d1x4ba1 19 QFRKLFIGGLSFETT----EESLRNYYEQW--GKLTDCVVMRDP 56 (103)
T ss_dssp HHTEEEEECCTTCCC----HHHHHHHHTSS--CCCSEEEEECCT
T ss_pred CCCEEEEeCCCCcCC----HHHHHHHHHhh--Ccccceeecccc
Confidence 358999999999987 79999999986 788888887543
No 36
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.07 E-value=0.00039 Score=52.28 Aligned_cols=35 Identities=6% Similarity=0.220 Sum_probs=29.1
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 010210 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 228 (515)
..+||.|.|||.+.+ +++|+++|+++ |.|.++.+.
T Consensus 5 ~~rtvfV~nlp~~~t----e~~l~~~F~~~--G~v~~v~l~ 39 (85)
T d1zh5a2 5 KNRSVYIKGFPTDAT----LDDIKEWLEDK--GQVLNIQMR 39 (85)
T ss_dssp HTTEEEEECCCTTCC----HHHHHHHHTTS--CCEEEEEEE
T ss_pred CcCEEEEECCCCCCC----HHHHHHHHHHh--cccccceee
Confidence 478999999999987 78999999987 567777654
No 37
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}
Probab=97.06 E-value=0.0011 Score=54.65 Aligned_cols=77 Identities=19% Similarity=0.217 Sum_probs=59.0
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 010210 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (515)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~~ 267 (515)
..+||.|.|||.+++ +++|+++|+++ |.|.++.+++|...
T Consensus 41 ~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~d~~t---------------------------------- 80 (139)
T d1u6fa1 41 VLRNLMVNYIPTTVD----EVQLRQLFERY--GPIESVKIVCDRET---------------------------------- 80 (139)
T ss_dssp TTSEEEEESCSTTCC----HHHHHHHHHHH--SCEEEEEEEEETTT----------------------------------
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHhh--cccccccccccccc----------------------------------
Confidence 357999999999986 79999999998 67888887654320
Q ss_pred CCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccC--CCCceeeee
Q 010210 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSD 345 (515)
Q Consensus 268 rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~--~~~~~~v~~ 345 (515)
.+..|.|||+|.+..+|..|.+.++.. ....++|+.
T Consensus 81 ------------------------------------------~~~rg~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 118 (139)
T d1u6fa1 81 ------------------------------------------RQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp ------------------------------------------TEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred ------------------------------------------ccccceeeEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 023478999999999999999877543 234577776
Q ss_pred C
Q 010210 346 A 346 (515)
Q Consensus 346 A 346 (515)
|
T Consensus 119 a 119 (139)
T d1u6fa1 119 A 119 (139)
T ss_dssp S
T ss_pred c
Confidence 5
No 38
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.05 E-value=0.00068 Score=50.91 Aligned_cols=29 Identities=14% Similarity=0.313 Sum_probs=25.0
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhC
Q 010210 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIY 218 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~ 218 (515)
.++.++|.|+|||.+.+ +++|+++|+++.
T Consensus 6 ~p~~~~l~v~nLp~~~~----~~di~~~F~~~~ 34 (86)
T d2cqpa1 6 KPGPTIIKVQNMPFTVS----IDEILDFFYGYQ 34 (86)
T ss_dssp CCSSEEEEEESCCTTCC----HHHHHHHTTTSC
T ss_pred CCCCCEEEEECCCCCCC----HHHHHHHHhhcc
Confidence 47788999999999987 799999998763
No 39
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.03 E-value=0.0022 Score=50.32 Aligned_cols=35 Identities=14% Similarity=0.125 Sum_probs=28.5
Q ss_pred cceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 010210 189 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 228 (515)
+.||.|.|||++..+ +++|+++|+++ |.|.++.+.
T Consensus 2 ~~~l~V~nL~p~~~t---e~~L~~~F~~f--G~I~~v~i~ 36 (109)
T d2adca1 2 NSVLLVSNLNPERVT---PQSLFILFGVY--GDVQRVKIL 36 (109)
T ss_dssp CSEEEEESCCTTTCC---HHHHHHHHHHH--TCEEEEEEC
T ss_pred CCEEEEeCCCcccCC---HHHHHHHHhhc--cccceEEEE
Confidence 579999999765444 89999999998 788888764
No 40
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.03 E-value=0.0014 Score=47.66 Aligned_cols=35 Identities=17% Similarity=0.199 Sum_probs=24.9
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccC--CCCceeeeeC
Q 010210 311 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDA 346 (515)
Q Consensus 311 ~~~~~aFVtF~~~~~a~~a~q~~~~~--~~~~~~v~~A 346 (515)
++.+.|||+|++..+|..|.+ +..+ +...++|+.|
T Consensus 39 ~~~~~afV~F~~~~~a~~al~-~~~~~l~gr~i~V~~A 75 (75)
T d2msta_ 39 RHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp TSCCEEEEECSCHHHHHHHHH-CSSCCBTTBCCEEEEC
T ss_pred ccCceeEEEECCHHHHHHHHh-cCCCEECCeEEEEEEC
Confidence 356899999999999999987 4332 2335566655
No 41
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=97.02 E-value=0.00084 Score=49.03 Aligned_cols=33 Identities=30% Similarity=0.458 Sum_probs=28.1
Q ss_pred eEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 010210 191 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (515)
Q Consensus 191 TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 229 (515)
||.|.|||.+.. +++|+++|++. |.|.++.+.+
T Consensus 2 tv~V~nlp~~~t----~~~l~~~F~~~--G~I~~v~~~~ 34 (75)
T d2ghpa2 2 TVLVKNLPKSYN----QNKVYKYFKHC--GPIIHVDVAD 34 (75)
T ss_dssp EEEEEEECTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred EEEEECCCCCCC----HHHHHHHHhcC--CceEEEEEEe
Confidence 899999999986 79999999987 6787777663
No 42
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.01 E-value=0.0025 Score=47.88 Aligned_cols=33 Identities=12% Similarity=0.258 Sum_probs=26.8
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcce
Q 010210 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYR 224 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~ 224 (515)
.|..+||.|.|||.+.+ +++|+++|++. |.|.+
T Consensus 7 ~pPs~tL~V~NLp~~~t----e~~l~~~F~~~--G~v~~ 39 (88)
T d2adca2 7 FPPSATLHLSNIPPSVS----EEDLKVLFSSN--GGVVK 39 (88)
T ss_dssp CCSCSEEEEECCCTTCC----HHHHHHHHHTT--SCCEE
T ss_pred CCCCCEEEEECCCCCCC----HHHHHHHhhcc--CCEEE
Confidence 36688999999999987 78899999986 45543
No 43
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.95 E-value=0.00081 Score=51.11 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=30.7
Q ss_pred CceEEEEeCCHHHHHHHHHHhccC--CCCceeeeeCCCCCcc
Q 010210 313 LGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPESREL 352 (515)
Q Consensus 313 ~~~aFVtF~~~~~a~~a~q~~~~~--~~~~~~v~~AP~P~DI 352 (515)
.|.|||+|++..+|..|.+.++.. ....++++.|=.+.|+
T Consensus 46 ~g~afV~F~~~~~A~~A~~~~~~~~~~g~~l~v~~ak~~~~~ 87 (91)
T d1nu4a_ 46 RGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDI 87 (91)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCCTH
T ss_pred CCceEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeCCCchh
Confidence 478999999999999999887644 2346778888655554
No 44
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.95 E-value=0.0022 Score=49.09 Aligned_cols=34 Identities=12% Similarity=0.299 Sum_probs=26.9
Q ss_pred eEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 010210 191 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (515)
Q Consensus 191 TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 229 (515)
.|.|.|||.+++ +++|+++|+++.| .|.++.+..
T Consensus 3 rLyV~nLp~~~t----e~~l~~~f~~~g~-~i~~v~~~~ 36 (96)
T d2disa1 3 RLFIGGIPKMKK----REEILEEIAKVTE-GVLDVIVYA 36 (96)
T ss_dssp EEEEECCCTTSC----HHHHHHHHHHHST-TEEEEECCS
T ss_pred EEEEcCCCCcCC----HHHHHHHHHHhCC-cceEEEEee
Confidence 588999999987 7899999999864 366665553
No 45
>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=96.91 E-value=0.0014 Score=50.57 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=31.1
Q ss_pred ceEEEEeCCHHHHHHHHHHhccC----CCCceeeeeCCCCCccc
Q 010210 314 GAALVFFTSRVAAASAAQSLHAQ----LVDTWTVSDAPESRELI 353 (515)
Q Consensus 314 ~~aFVtF~~~~~a~~a~q~~~~~----~~~~~~v~~AP~P~DIi 353 (515)
+.|||.|++..+|..|.+.+..+ ....+.|+.|..+.+++
T Consensus 56 ~~afV~f~~~~~A~~Ai~~~~~~~~~~~gr~l~V~~s~~~~~l~ 99 (99)
T d1x4fa1 56 SQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKLV 99 (99)
T ss_dssp TEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSSSS
T ss_pred CcEEEEecchHHHHHHHHHHhcCCceECCEEEEEEEcCCcccCC
Confidence 68999999999999998754322 23568899998888764
No 46
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.90 E-value=0.00075 Score=50.98 Aligned_cols=33 Identities=9% Similarity=0.148 Sum_probs=27.2
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceE
Q 010210 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRS 225 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v 225 (515)
...+||.|.|||.+++ +++|+++|+++ |.|.++
T Consensus 3 ~~s~~lfV~nLp~~~t----e~~L~~~F~~~--G~v~~v 35 (88)
T d1wf0a_ 3 SGSSGVFVGRCTGDMT----EDELREFFSQY--GDVMDV 35 (88)
T ss_dssp SCCCEEEEESCCSSSC----HHHHHHHSTTT--SCCCEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHc--CCceEE
Confidence 4578999999999987 79999999986 456554
No 47
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.88 E-value=0.0037 Score=46.61 Aligned_cols=35 Identities=26% Similarity=0.227 Sum_probs=27.3
Q ss_pred CceEEEEeCCHHHHHHHHHHhccC--CCCceeeeeCC
Q 010210 313 LGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAP 347 (515)
Q Consensus 313 ~~~aFVtF~~~~~a~~a~q~~~~~--~~~~~~v~~AP 347 (515)
.|.|||+|.+..+|..|.+.++.. ....+.|+.|-
T Consensus 44 rg~afV~f~~~~~A~~Ai~~l~~~~i~g~~i~V~~ak 80 (86)
T d2cpda1 44 RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 80 (86)
T ss_dssp SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred cEEEEEEeCCHHHHHHHHHHcCCCEECCEEEEEEecc
Confidence 469999999999999999987654 23456777763
No 48
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.87 E-value=0.0033 Score=49.69 Aligned_cols=77 Identities=17% Similarity=0.121 Sum_probs=58.3
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 010210 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~ 266 (515)
...+||.|.|||.+++ +++|+++|+++ |.|.++.+..+
T Consensus 5 ~~~r~l~V~nLp~~~t----e~~l~~~F~~~--G~v~~i~~~~~------------------------------------ 42 (114)
T d2f9da1 5 EVNRILYIRNLPYKIT----AEEMYDIFGKY--GPIRQIRVGNT------------------------------------ 42 (114)
T ss_dssp TCCSEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEECS------------------------------------
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHhhc--CCeEeeccccc------------------------------------
Confidence 4578999999999886 79999999997 67777654311
Q ss_pred CCCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC--CCceeee
Q 010210 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVS 344 (515)
Q Consensus 267 ~rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~ 344 (515)
....|.|||+|.+..+|..|.+.++... ...+.|+
T Consensus 43 -------------------------------------------~~~kG~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 79 (114)
T d2f9da1 43 -------------------------------------------PETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVL 79 (114)
T ss_dssp -------------------------------------------TTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred -------------------------------------------CCcCCeEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 0123799999999999999998876543 3456777
Q ss_pred eCCC
Q 010210 345 DAPE 348 (515)
Q Consensus 345 ~AP~ 348 (515)
.|.+
T Consensus 80 ~a~~ 83 (114)
T d2f9da1 80 YYNA 83 (114)
T ss_dssp ECCH
T ss_pred EcCC
Confidence 7654
No 49
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.84 E-value=0.0036 Score=47.73 Aligned_cols=37 Identities=16% Similarity=-0.079 Sum_probs=28.7
Q ss_pred CceEEEEeCCHHHHHHHHHHhccCC--CCceeeeeCCCC
Q 010210 313 LGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPES 349 (515)
Q Consensus 313 ~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~AP~P 349 (515)
.+.|||+|.+.++|..|.+.++... ...++|+.|-+.
T Consensus 53 ~g~afV~f~~~e~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 91 (95)
T d1x4aa1 53 PPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG 91 (95)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred cceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeccCC
Confidence 4689999999999999998876542 346778877543
No 50
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.81 E-value=0.0024 Score=49.62 Aligned_cols=33 Identities=12% Similarity=0.407 Sum_probs=26.1
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEE
Q 010210 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (515)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i 227 (515)
..+||.|.|||.+++ +++|+++|+++ | +.++.+
T Consensus 14 p~~~v~V~nLp~~~t----e~~l~~~f~~~--g-~~~~~~ 46 (104)
T d1wi8a_ 14 PPYTAFLGNLPYDVT----EESIKEFFRGL--N-ISAVRL 46 (104)
T ss_dssp SCEEEEEESCCSSCC----HHHHHHHTTTS--C-EEEEEC
T ss_pred CCCEEEEeCCCCcCC----HHHHHHHHHHh--c-ccccee
Confidence 458999999999987 78999999875 3 445543
No 51
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.80 E-value=0.0018 Score=47.49 Aligned_cols=36 Identities=11% Similarity=0.248 Sum_probs=28.9
Q ss_pred cceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010210 189 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
.++|.|.|||.+.+ +++|+++|+++ |.+.++.+..|
T Consensus 2 ~r~lfV~nLp~~~t----e~~l~~~F~~~--G~i~~~~~~~~ 37 (79)
T d1l3ka2 2 VKKIFVGGIKEDTE----EHHLRDYFEQY--GKIEVIEIMTD 37 (79)
T ss_dssp CSEEEEECCTTTCC----HHHHHHHHTTT--SCEEEEEEEEC
T ss_pred CCEEEECCCCCcCC----HHHHHHHHHHh--ccccccccccC
Confidence 57899999999887 79999999987 56666655543
No 52
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.78 E-value=0.0058 Score=46.63 Aligned_cols=37 Identities=11% Similarity=0.171 Sum_probs=30.6
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 010210 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 228 (515)
.+..+||.|.|||.++. +++|+++|+++ |.|.++.+.
T Consensus 15 ~~~~~~l~v~nL~~~~t----e~~L~~~F~~f--G~i~~v~i~ 51 (96)
T d1x4ga1 15 SPKNCTVYCGGIASGLT----DQLMRQTFSPF--GQIMEIRVF 51 (96)
T ss_dssp CSSCCEEEEECCSSCCC----HHHHHHHHHHH--SCEEEEEEE
T ss_pred CCCCCEEEEcCCCCCCC----HHHHHHHHHHh--CCceEEEEE
Confidence 36678999999999976 79999999987 667777655
No 53
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}
Probab=96.76 E-value=0.00082 Score=51.14 Aligned_cols=27 Identities=7% Similarity=0.207 Sum_probs=24.0
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHh
Q 010210 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAI 217 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~ 217 (515)
...+||.|.|||.+++ +++|+++|+++
T Consensus 11 ~~~~~ifV~nL~~~~t----e~~l~~~F~~~ 37 (91)
T d1fjeb1 11 TTPFNLFIGNLNPNKS----VAELKVAISEL 37 (91)
T ss_dssp SSSEEEEEECCCTTSC----HHHHHHHHHHH
T ss_pred CCCcEEEEeCccCcch----HHHHHHHHhcC
Confidence 4678999999999987 79999999876
No 54
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.75 E-value=0.0013 Score=51.10 Aligned_cols=36 Identities=11% Similarity=0.302 Sum_probs=30.6
Q ss_pred cceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010210 189 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
.+||.|.|||.+.+ +++|+++|+.+ |.|.++.+.+|
T Consensus 18 ~~tifV~nL~~~~t----e~~l~~~F~~~--G~V~~v~i~~d 53 (101)
T d2cq4a1 18 ARTVFCMQLAARIR----PRDLEDFFSAV--GKVRDVRIISD 53 (101)
T ss_dssp HTEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEECCS
T ss_pred CCEEEEECCCCCCC----HHHHHHHHcCC--CeEEEEEeeec
Confidence 57999999999987 79999999986 67888877643
No 55
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.69 E-value=0.0025 Score=49.25 Aligned_cols=38 Identities=13% Similarity=0.122 Sum_probs=28.7
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccCC--CCceeeeeCCC
Q 010210 311 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPE 348 (515)
Q Consensus 311 ~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~AP~ 348 (515)
++.+.|||.|.+..+|..|.+.++... ...++|+.|=+
T Consensus 58 ~~~g~~fV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ak~ 97 (102)
T d2cpxa1 58 RMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKN 97 (102)
T ss_dssp SSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCC
T ss_pred cccccceEEeccHHHHHHHHHHhCCCEECCEEEEEEeCCC
Confidence 456899999999999999998876543 23566777643
No 56
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}
Probab=96.66 E-value=0.005 Score=47.09 Aligned_cols=35 Identities=9% Similarity=-0.030 Sum_probs=28.3
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEE
Q 010210 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i 227 (515)
+..+||.|.|||.+++ +++|+++|+++ |.|.++.+
T Consensus 15 ~Ps~tl~V~nLp~~~t----~~~l~~~f~~~--G~i~~~~~ 49 (97)
T d1whya_ 15 NPTTRLWVGGLGPNTS----LAALAREFDRF--GSIRTIDH 49 (97)
T ss_dssp CCCSCEEEECCCSSCC----HHHHHHHHHTT--SCEEEEEE
T ss_pred CCCCEEEEcCCCCCCC----HHHHHHHHHhh--cccceEee
Confidence 4578999999999986 78899999987 56665543
No 57
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.65 E-value=0.005 Score=45.51 Aligned_cols=37 Identities=30% Similarity=0.245 Sum_probs=28.1
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccCC--CCceeeeeCC
Q 010210 311 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAP 347 (515)
Q Consensus 311 ~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~AP 347 (515)
++.|.|||+|.+..+|..|.+.++... ...++++.|-
T Consensus 39 ~~~g~afV~f~~~~~a~~Ai~~~~g~~~~gr~l~v~~a~ 77 (83)
T d1x5ta1 39 NSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF 77 (83)
T ss_dssp SCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESC
T ss_pred ccCceEEEEECCHHHHHHHHHhCCCcEECCEEEEEEEec
Confidence 356899999999999999998775432 3356777763
No 58
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.64 E-value=0.0047 Score=47.52 Aligned_cols=36 Identities=25% Similarity=0.163 Sum_probs=28.5
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccCC--CCceeeeeC
Q 010210 311 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDA 346 (515)
Q Consensus 311 ~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~A 346 (515)
+..+.|||+|.+..+|..|.+.++... ...++|+.|
T Consensus 56 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~a 93 (101)
T d2cpea1 56 KPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 93 (101)
T ss_dssp SBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECS
T ss_pred cccceeeEEecCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 457899999999999999999876542 345677766
No 59
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.61 E-value=0.0021 Score=46.30 Aligned_cols=31 Identities=6% Similarity=0.155 Sum_probs=24.7
Q ss_pred EEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 010210 192 VLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 192 VlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 228 (515)
|.|.|||.+++ +++|+++|+++ |.|.++.+.
T Consensus 1 lyV~nLp~~~t----e~~l~~~F~~~--G~v~~~~~~ 31 (72)
T d1x4ea1 1 LYIRGLQPGTT----DQDLVKLCQPY--GKIVSTKAI 31 (72)
T ss_dssp EEEESCCTTCC----HHHHHTTSTTT--SCEEEEEEE
T ss_pred CEEeCCCCcCC----HHHHHHHHhhh--ccccccccc
Confidence 57999999987 78999999886 566666544
No 60
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=96.56 E-value=0.001 Score=50.39 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=28.7
Q ss_pred CccceEEEecCCCCCCCCChHHHH---HHHHHHhCCCCcceEEEecC
Q 010210 187 PQQFAVLVRDLPDLPKGQSRKEQV---DSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l---~~~f~~~~p~~v~~v~i~~d 230 (515)
.+.++|.|.|||.++++ ++| .++|.++ |.|.++.+..|
T Consensus 6 iq~n~vyV~nLp~~~t~----~~l~~~~e~F~~~--G~I~~v~i~~~ 46 (89)
T d2cpia1 6 VQKNLVFVVGLSQRLAD----PEVLKRPEYFGKF--GKIHKVVINNS 46 (89)
T ss_dssp CCSSCEEEEEECTTTCC----HHHHHSTTTTTTT--SCEEEEEEECC
T ss_pred EecCEEEEECCCCccCH----HHHHHHHHHhccc--CCceEEEEeec
Confidence 45678999999999985 555 5677765 78888877643
No 61
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.54 E-value=0.0054 Score=45.94 Aligned_cols=35 Identities=11% Similarity=0.086 Sum_probs=27.9
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEE
Q 010210 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSM 226 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~ 226 (515)
.+.++||.|.|||.+++ +++|+++|+++ |.|.++.
T Consensus 5 ~~Ps~~l~V~nLp~~~t----~~~L~~~f~~~--G~i~~v~ 39 (88)
T d2cq1a1 5 GAPSRVLHIRKLPGEVT----ETEVIALGLPF--GKVTNIL 39 (88)
T ss_dssp SSCCSEEEEESCCTTCC----HHHHHHTTTTT--SCEEEEE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHhcc--ccccccc
Confidence 46789999999999876 78999999875 4565554
No 62
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.53 E-value=0.004 Score=47.82 Aligned_cols=37 Identities=19% Similarity=0.253 Sum_probs=29.0
Q ss_pred ceEEEEeCCHHHHHHHHHHhccCC--CCceeeeeCCCCC
Q 010210 314 GAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPESR 350 (515)
Q Consensus 314 ~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~AP~P~ 350 (515)
+.|||+|++..+|..|.+.+.... ...++|+.|.+|+
T Consensus 51 g~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 89 (98)
T d1wf2a_ 51 GFAFVQYVNERNARAAVAGEDGRMIAGQVLDINLAAEPK 89 (98)
T ss_dssp EEEEEEESSHHHHHHHHHTTTTCEETTEECEEEETTSCC
T ss_pred CeEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 589999999999999999876542 3467888886553
No 63
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.50 E-value=0.0032 Score=47.32 Aligned_cols=35 Identities=23% Similarity=0.159 Sum_probs=28.7
Q ss_pred ceEEEEeCCHHHHHHHHHHhccCC--CCceeeeeCCC
Q 010210 314 GAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPE 348 (515)
Q Consensus 314 ~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~AP~ 348 (515)
+.|||+|.+..+|..|.+.++... ...++|+.||.
T Consensus 41 g~afV~f~~~~~A~~Ai~~ln~~~~~G~~l~V~~a~~ 77 (88)
T d1wg1a_ 41 RTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp TEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CceEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 689999999999999999877653 45678888864
No 64
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.46 E-value=0.0091 Score=43.60 Aligned_cols=33 Identities=21% Similarity=0.168 Sum_probs=26.2
Q ss_pred ceEEEEeCCHHHHHHHHHHhccCC--CCceeeeeC
Q 010210 314 GAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDA 346 (515)
Q Consensus 314 ~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~A 346 (515)
+.|||+|++..+|..|.+.+.... ...++|+.|
T Consensus 40 ~~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 74 (79)
T d2bz2a1 40 NCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 74 (79)
T ss_dssp TEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CEEEEEEcccHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 589999999999999998876543 346777776
No 65
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.31 E-value=0.0046 Score=47.73 Aligned_cols=36 Identities=8% Similarity=0.268 Sum_probs=28.3
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 010210 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 228 (515)
...++|.|.|||.+.+ +++|+++|+++ |.|.++.+.
T Consensus 16 ~~~~~lfV~nLp~~~t----e~~L~~~F~~~--G~i~~~~~~ 51 (101)
T d1x5oa1 16 QDPTNLYISNLPLSMD----EQELENMLKPF--GQVISTRIL 51 (101)
T ss_dssp CCTTEEEEESCCTTCC----HHHHHHTTTTT--SCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHhhc--ccccceeee
Confidence 4467999999999987 79999999886 456655443
No 66
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.23 E-value=0.0036 Score=48.42 Aligned_cols=36 Identities=17% Similarity=0.314 Sum_probs=27.8
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 010210 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 228 (515)
....+||.|+|||.+.+ +++|+++|+.. .+.++.+.
T Consensus 12 ~~~~~~v~v~nLp~~~t----e~dl~~~F~~~---~~~~v~~~ 47 (102)
T d1weza_ 12 STTGHCVHMRGLPYRAT----ENDIYNFFSPL---NPMRVHIE 47 (102)
T ss_dssp CSSSCEEEEESCCTTCC----HHHHHHSSCSC---CCSEEEEE
T ss_pred CCCCCEEEEeCCCCcCC----HHHHHHHHhcc---CcceeeeE
Confidence 45678999999999987 79999999864 24455544
No 67
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.21 E-value=0.01 Score=45.90 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=24.1
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHh
Q 010210 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAI 217 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~ 217 (515)
...+.+|.|+|||.+.+ +++|+++|+..
T Consensus 12 ~~~~~~v~v~nLP~~~t----e~dI~~~F~~~ 39 (104)
T d1wg5a_ 12 TANDGFVRLRGLPFGCS----KEEIVQFFSGL 39 (104)
T ss_dssp CSCCCEEEEESCCTTCC----HHHHHHHTTTC
T ss_pred CCCCcEEEEeCCCCCCC----HHHHHHHHHhc
Confidence 35677899999999987 79999999876
No 68
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}
Probab=96.20 E-value=0.017 Score=44.63 Aligned_cols=36 Identities=17% Similarity=0.096 Sum_probs=28.7
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEE
Q 010210 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i 227 (515)
.+...+|.|+|||.+++ +++|.++|+++ |.|.++.+
T Consensus 12 ~~ps~~l~v~nlp~~~t----e~~l~~~F~~f--G~I~~~~~ 47 (104)
T d1wexa_ 12 VSVSPVVHVRGLCESVV----EADLVEALEKF--GTICYVMM 47 (104)
T ss_dssp CCCCSEEEEESCCSSCC----HHHHHHHHTTT--SCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHhhhhc--ccceEEEE
Confidence 35678999999999886 78999999886 56666543
No 69
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.08 E-value=0.0083 Score=43.99 Aligned_cols=35 Identities=20% Similarity=0.148 Sum_probs=27.7
Q ss_pred ceEEEEeCCHHHHHHHHHHhccC---CCCceeeeeCCC
Q 010210 314 GAALVFFTSRVAAASAAQSLHAQ---LVDTWTVSDAPE 348 (515)
Q Consensus 314 ~~aFVtF~~~~~a~~a~q~~~~~---~~~~~~v~~AP~ 348 (515)
|.|||+|.+..+|..|.+.++.. +...++|+.|-+
T Consensus 38 g~aFV~f~~~~~A~~Ai~~lng~~~~~G~~i~V~~a~~ 75 (80)
T d2cqha1 38 GYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 75 (80)
T ss_dssp TEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred ceEEEEECCHHHHHHHHHHhCCCeEECCEEEEEEEcCC
Confidence 69999999999999999987643 234677887753
No 70
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=95.85 E-value=0.013 Score=43.93 Aligned_cols=37 Identities=8% Similarity=0.081 Sum_probs=29.5
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 010210 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 228 (515)
..+++|.|.|+|+...+ +++|.+.|+.+ |.|.++.+.
T Consensus 6 ~~sr~v~v~nl~~~~~t---~~eL~~lF~~f--G~I~~i~i~ 42 (89)
T d1x4da1 6 ETRRVVHIMDFQRGKNL---RYQLLQLVEPF--GVISNHLIL 42 (89)
T ss_dssp CCCCEEEEESCCCSSSH---HHHHHTTTGGG--SCEEEEEEC
T ss_pred CCCcEEEEECCCCCcCC---HHHHHHHHHhh--CCeEEEEee
Confidence 56899999999986544 88999999986 678776543
No 71
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=95.81 E-value=0.028 Score=43.28 Aligned_cols=43 Identities=19% Similarity=0.128 Sum_probs=29.1
Q ss_pred ceEEEEeCCHHHHHHHHHHhccCC--CCceeeeeCCCCCccccccc
Q 010210 314 GAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPESRELIWNNL 357 (515)
Q Consensus 314 ~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~AP~P~DIiW~NL 357 (515)
+.|||+|++..+|..|.+.++... ...++++.| .|.+....++
T Consensus 47 ~~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a-~~~~~~~~~~ 91 (104)
T d1weya_ 47 KRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFA-QTLHIGSSHL 91 (104)
T ss_dssp TEEEEECSSTTHHHHHHHTSTTSEETTEECEEECC-CCSSCCSCCS
T ss_pred CEEEEEECCHHHHHHHHHHhcccccCCCEeEEeec-ccCCCCCccc
Confidence 579999999999999999877542 234555555 3444444443
No 72
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.72 E-value=0.0095 Score=45.95 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=24.7
Q ss_pred CCCccceEEEecCCCCCCCCChHHHHHHHHHHh
Q 010210 185 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAI 217 (515)
Q Consensus 185 ~~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~ 217 (515)
...+..||.|+|||.+.+ +++|+++|++.
T Consensus 4 v~~~~~~v~v~nLp~~~t----~~~l~~~F~~~ 32 (103)
T d2cpya1 4 VNSAKVCAHITNIPFSIT----KMDVLQFLEGI 32 (103)
T ss_dssp CCSCCCEEEEESCCTTSC----HHHHHHHTTTS
T ss_pred CCCCceEEEEeCCCCCCC----HHHHhhhhccc
Confidence 345678999999999987 79999999875
No 73
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.70 E-value=0.0087 Score=46.67 Aligned_cols=34 Identities=12% Similarity=0.197 Sum_probs=26.5
Q ss_pred cceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 010210 189 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 228 (515)
..+|.|.|||.+++ +++|++.|+++ |.|.++.+.
T Consensus 7 ~~~v~V~NL~~~vt----e~~L~~~F~~~--G~i~~~~i~ 40 (108)
T d2adba1 7 VLRIIVENLFYPVT----LDVLHQIFSKF--GTVLKIITF 40 (108)
T ss_dssp EEEEESCSCCSTTH----HHHHHHHHTTT--SCEEEEEEE
T ss_pred eEEEEEeCcCCCCC----HHHHHHHHccC--CcEEEEEEE
Confidence 34678999999887 78999999986 567766554
No 74
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.29 E-value=0.02 Score=48.82 Aligned_cols=38 Identities=11% Similarity=0.215 Sum_probs=31.5
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010210 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
...++|.|.|||.+.+ +++|+++|++. |.|.++.+..|
T Consensus 95 ~~~~~i~V~~lp~~~t----e~~L~~~f~~~--G~v~~~~i~~~ 132 (183)
T d1u1qa_ 95 LTVKKIFVGGIKEDTE----EHHLRDYFEQY--GKIEVIEIMTD 132 (183)
T ss_dssp CCCSEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred cccceeEEccCCCcCC----HHHHhhhhccC--Cceeeeeeecc
Confidence 5678999999999887 79999999986 67888877644
No 75
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.13 E-value=0.03 Score=47.60 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=29.7
Q ss_pred cceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 010210 189 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (515)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 229 (515)
.+||.|.|||.+++ +++|+++|+++ |.|.++.+.+
T Consensus 6 ~r~lfV~nLp~~~t----e~~L~~~F~~~--G~v~~~~~~~ 40 (183)
T d1u1qa_ 6 LRKLFIGGLSFETT----DESLRSHFEQW--GTLTDCVVMR 40 (183)
T ss_dssp HHEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred CCEEEEECCCCCCC----HHHHHHHHHHc--CCEEEEEeee
Confidence 48999999999986 79999999987 6788777654
No 76
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}
Probab=94.64 E-value=0.022 Score=43.11 Aligned_cols=35 Identities=14% Similarity=0.088 Sum_probs=26.7
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccCC--CCceeeeeC
Q 010210 312 QLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDA 346 (515)
Q Consensus 312 ~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~A 346 (515)
..+.|||+|.+..+|..|.+.++... ...++|+.|
T Consensus 52 ~~~~afV~f~~~~~A~~A~~~l~~~~~~gr~i~V~~a 88 (96)
T d1fjca_ 52 SKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp EEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred cccEEEEEeCCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34799999999999999999876542 335666665
No 77
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.40 E-value=0.014 Score=45.73 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=23.2
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHh
Q 010210 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAI 217 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~ 217 (515)
...|||.|+|||.+.+ +++|+++|+.+
T Consensus 16 ~~~~~i~v~nLp~~~t----~~di~~~F~~~ 42 (112)
T d1wela1 16 EAGFCVYLKGLPFEAE----NKHVIDFFKKL 42 (112)
T ss_dssp CCCCEEEEECCCTTCC----HHHHHHHSCSS
T ss_pred CCCeEEEEecCCCcCc----HHHHhhHHhhc
Confidence 4578999999999987 78899999765
No 78
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=93.50 E-value=0.053 Score=38.82 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=31.2
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccC--CCCceeeeeCCCC
Q 010210 311 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPES 349 (515)
Q Consensus 311 ~~~~~aFVtF~~~~~a~~a~q~~~~~--~~~~~~v~~AP~P 349 (515)
+..|.|||+|++..+|..|.+.++.. +...++|+.||..
T Consensus 31 ~~~g~afv~f~~~~~A~~Ai~~ln~~~~~g~~l~V~~a~~d 71 (75)
T d1wi6a1 31 KYKGTAFVTLLNGEQAEAAINTFHQSRLRERELSVQLQPTD 71 (75)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCST
T ss_pred ccceeEEEEECCHHHHHHHHHHhCCccCCCCEEEEEEeCCC
Confidence 34589999999999999999988754 3456789998754
No 79
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=93.00 E-value=0.2 Score=37.97 Aligned_cols=34 Identities=9% Similarity=0.038 Sum_probs=26.1
Q ss_pred CccceEEEec--CCCCCCCCChHHHHHHHHHHhCCCCcceEE
Q 010210 187 PQQFAVLVRD--LPDLPKGQSRKEQVDSYFKAIYPDTFYRSM 226 (515)
Q Consensus 187 ~~~~TVlV~~--IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~ 226 (515)
....++.|.| ||.+++ +++|++.|+++ |.|.++.
T Consensus 16 ~pt~~l~V~ng~L~~~vt----e~~L~~~F~~~--G~i~~i~ 51 (101)
T d2cq2a1 16 YATQSLVVANGGLGNGVS----RNQLLPVLEKC--GLVDALL 51 (101)
T ss_dssp SCCSEEEEETCTGGGTCC----HHHHHHHHHHH--SCEEEEE
T ss_pred CCCceEEEECCCCCCCCC----HHHHHHHHHhh--CcccEEe
Confidence 4456788865 999887 79999999998 5666553
No 80
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=92.19 E-value=0.066 Score=40.55 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=30.4
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 010210 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 228 (515)
.++++|.|.|||.+++ +++|+++|+++ |.|.++.+.
T Consensus 13 ~~~~~i~V~Nlp~~~~----~~~L~~~F~~~--G~v~~~~i~ 48 (98)
T d1wg4a_ 13 RSDFRVLVSGLPPSGS----WQDLKDHMREA--GDVCYADVQ 48 (98)
T ss_dssp SCSCEEEEECCCSSCC----HHHHHHHHTTS--SCEEEEEEE
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHHhh--ccccccccc
Confidence 4578999999999987 79999999886 578888764
No 81
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=91.70 E-value=0.058 Score=39.83 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=28.8
Q ss_pred eEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010210 191 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 191 TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
.|.|.|||.+++ +++|+++|+++ |.|.++.+..|
T Consensus 2 rvfV~nlp~~~~----~~~l~~~F~~~--G~v~~~~i~~~ 35 (87)
T d3begb1 2 RVVVSGLPPSGS----WQDLKDHMREA--GDVCYADVYRD 35 (87)
T ss_dssp CEEEEECCSSCC----TTHHHHHHGGG--SCEEEEEECTT
T ss_pred eEEEECCCCcCC----HHHHHHHHhhh--ccccccccccc
Confidence 589999999987 68899999988 67888877655
No 82
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=91.70 E-value=0.3 Score=36.73 Aligned_cols=55 Identities=22% Similarity=0.111 Sum_probs=37.6
Q ss_pred HHhHHHHHHHHHhhhh--------cccCCceEEEEeCCHHHHHHHHHHhccCC--CCceeeeeCC
Q 010210 293 IKEIIPKLEAEQKITL--------KEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAP 347 (515)
Q Consensus 293 i~~l~~~I~~~r~~~~--------~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~AP 347 (515)
..++++++.++-.+.+ ...+.|.|||+|++..+|..|.+.++... ...+.++.+.
T Consensus 29 ~~~i~edv~~~~~~~G~V~~v~~~~~~~~G~~fV~f~~~e~A~~A~~~lng~~~~gr~i~v~~~~ 93 (99)
T d2dita1 29 LNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWD 93 (99)
T ss_dssp HHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECC
T ss_pred HHHHHHHHHHHhcCcccEEEEeccCCCCccEEEEEECCHHHHHHHHHHhCCcEECCEEEEEEEeC
Confidence 4456666665544432 23457899999999999999999886542 3456676653
No 83
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=88.12 E-value=0.63 Score=35.13 Aligned_cols=55 Identities=20% Similarity=0.100 Sum_probs=37.2
Q ss_pred HHhHHHHHHHHHhhhhc--------------ccCCceEEEEeCCHHHHHHHHHHhccCC--CCceeeeeCC
Q 010210 293 IKEIIPKLEAEQKITLK--------------EKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAP 347 (515)
Q Consensus 293 i~~l~~~I~~~r~~~~~--------------~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~AP 347 (515)
.+++.++|+++-++.+. ....|.|||.|++..+|..|.+.++... .....+..+|
T Consensus 24 ~~~i~edi~~e~~k~G~v~~v~I~~~~~~~~~~~~g~vfV~f~~~e~A~~A~~~l~Gr~f~gR~v~v~f~~ 94 (104)
T d1o0pa_ 24 YEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD 94 (104)
T ss_dssp HHHHHHHHHHHHTTTSCEEEEECCCCTTSSSCTTCCEEEEEESCHHHHHHHHHHHSSCCSSSSCCEEEEEC
T ss_pred HHHHHHHHHHHhcccCceEEEEEeecCCCCccCCceEEEEEECCHHHHHHHHHHHCCCEECCeEEEEEEcC
Confidence 45566666665544321 1235799999999999999999988764 3345565554
No 84
>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Probab=87.33 E-value=1 Score=33.98 Aligned_cols=37 Identities=19% Similarity=0.200 Sum_probs=27.9
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccCC--CCceeeeeCC
Q 010210 311 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAP 347 (515)
Q Consensus 311 ~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~AP 347 (515)
+..|.|||+|.+..+|..|.+.+.... ...+.++..|
T Consensus 66 ~~~G~~fV~f~~~~~A~~Ai~~lng~~~~gr~i~v~~sP 104 (104)
T d1jmta_ 66 HLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSP 104 (104)
T ss_dssp SSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEECC
T ss_pred CEeeEEEEEEechhHHHHHHHHHCCCEECCEEEEEEECC
Confidence 456999999999999999999876542 3345566554
No 85
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=75.50 E-value=1.1 Score=32.46 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=21.4
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccC
Q 010210 312 QLGAALVFFTSRVAAASAAQSLHAQ 336 (515)
Q Consensus 312 ~~~~aFVtF~~~~~a~~a~q~~~~~ 336 (515)
.-|.|||+|.+..+|+.|.+.++..
T Consensus 34 ~~g~afV~f~~~~~a~~Ai~~l~g~ 58 (87)
T d3begb1 34 RDGTGVVEFVRKEDMTYAVRKLDNT 58 (87)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHTTC
T ss_pred ccceeeEEeCCHHHHHHHHHHhCCC
Confidence 3489999999999999999877654
No 86
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=72.05 E-value=0.94 Score=32.92 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=22.7
Q ss_pred cceEEEecCCCCCCCCChHHHHHHHHHHhC
Q 010210 189 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIY 218 (515)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~ 218 (515)
+|.|.|.|||.+.+ +++|+++|+++.
T Consensus 1 aRrlyVgNLp~~~t----e~~l~~~F~~~g 26 (90)
T d1u2fa_ 1 ARRLYVGNIPFGIT----EEAMMDFFNAQM 26 (90)
T ss_dssp CCEEEECSCCTTCC----TTHHHHHHHHHH
T ss_pred CCEEEEcCCCCccc----hHHHHHHHHhhC
Confidence 47899999999988 688999999874
No 87
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=70.18 E-value=1.6 Score=32.40 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=21.1
Q ss_pred CCceEEEEeCCHHHHHHHHHHhcc
Q 010210 312 QLGAALVFFTSRVAAASAAQSLHA 335 (515)
Q Consensus 312 ~~~~aFVtF~~~~~a~~a~q~~~~ 335 (515)
..+.|||+|.+..+|+.|.+.++.
T Consensus 49 ~~g~afV~f~~~~~a~~Ai~~lng 72 (98)
T d1wg4a_ 49 KDGMGMVEYLRKEDMEYALRKLDD 72 (98)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHSS
T ss_pred ccceEEEEECCHHHHHHHHHHhCC
Confidence 458999999999999999988764
No 88
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=67.52 E-value=1.6 Score=33.34 Aligned_cols=38 Identities=16% Similarity=0.089 Sum_probs=30.9
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010210 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
..-.++.|.|||.+++ +++|+++|+++ |.|.+|.+..+
T Consensus 9 ~g~~~~fvgnL~~~~t----ee~Lk~~F~~f--G~V~~v~i~~~ 46 (113)
T d1owxa_ 9 IGCLLKFSGDLDDQTC----REDLHILFSNH--GEIKWIDFVRG 46 (113)
T ss_dssp CCCEEEEEESCCSSCC----HHHHHHHTCSS--CCEEEEECCTT
T ss_pred CCCeEEEECCCCCCCC----HHHHHHHHHhc--CChheEEEecC
Confidence 4556788999999877 79999999987 67888877754
No 89
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=65.25 E-value=1.6 Score=30.42 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=19.7
Q ss_pred EEEecCCCCCCCCChHHHHHHHHHHh
Q 010210 192 VLVRDLPDLPKGQSRKEQVDSYFKAI 217 (515)
Q Consensus 192 VlV~~IP~~~~~~~~~~~l~~~f~~~ 217 (515)
|.|.|||.+.+ +++|+++|+++
T Consensus 1 i~V~nLp~~~t----~~~l~~~F~~~ 22 (75)
T d1wi6a1 1 ILIRGLPGDVT----NQEVHDLLSDY 22 (75)
T ss_dssp EEEECCCTTCC----HHHHHHHTTTS
T ss_pred CEEeCCCCcCC----HHHHHHHHhcc
Confidence 67999999987 79999999886
No 90
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=63.87 E-value=2.2 Score=30.31 Aligned_cols=20 Identities=15% Similarity=0.079 Sum_probs=18.2
Q ss_pred CCceEEEEeCCHHHHHHHHH
Q 010210 312 QLGAALVFFTSRVAAASAAQ 331 (515)
Q Consensus 312 ~~~~aFVtF~~~~~a~~a~q 331 (515)
..+.|||.|+++.+|..|.+
T Consensus 38 ~~~~~fV~f~~~~~A~~Al~ 57 (81)
T d1wwha1 38 TGNWMHIRYQSKLQARKALS 57 (81)
T ss_dssp SSSEEEEEESSHHHHHHHHT
T ss_pred CCCEEEEEEcccHHHHHHHh
Confidence 35899999999999999997
No 91
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=54.53 E-value=4 Score=30.05 Aligned_cols=44 Identities=7% Similarity=0.169 Sum_probs=30.9
Q ss_pred CCccceEEEecC--CCCCCCC-----ChHHHHHHHHHHhCCCCcceEEEecCc
Q 010210 186 RPQQFAVLVRDL--PDLPKGQ-----SRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (515)
Q Consensus 186 ~~~~~TVlV~~I--P~~~~~~-----~~~~~l~~~f~~~~p~~v~~v~i~~d~ 231 (515)
.-.++||+|+|+ |.++.++ +..++|++.|+++ |.|.++.+..+.
T Consensus 5 ~~~~r~v~l~nmf~~~~~~~~~~~~~~i~edv~~~~~~~--G~V~~v~~~~~~ 55 (99)
T d2dita1 5 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF--GQIRKLLLFDRH 55 (99)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT--SCCSEEEEETTC
T ss_pred CCCccEEEEccCCCHHHhhcchHHHHHHHHHHHHHhcCc--ccEEEEeccCCC
Confidence 356899999999 8765421 2346677777776 678888776654
No 92
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=53.48 E-value=5.9 Score=27.89 Aligned_cols=36 Identities=11% Similarity=0.136 Sum_probs=26.3
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010210 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
.+..|.|.|+|++.+ +++.++|+++ |.|.++.+..+
T Consensus 3 ~~~wV~V~G~p~~~~-----~~il~~F~~~--G~I~~~~~~~~ 38 (81)
T d1wwha1 3 DDTWVTVFGFPQASA-----SYILLQFAQY--GNILKHVMSNT 38 (81)
T ss_dssp GGGEEEEECCCGGGH-----HHHHHHHHTT--SCEEEEEECSS
T ss_pred cccEEEEECCChHHH-----HHHHHHHHhh--hhhheEEecCC
Confidence 467899999998764 3455689987 67888776543
No 93
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.88 E-value=4.6 Score=29.96 Aligned_cols=43 Identities=7% Similarity=-0.037 Sum_probs=30.2
Q ss_pred CccceEEEecC--CCCCCCC----ChHHHHHHHHHHhCCCCcceEEEecCc
Q 010210 187 PQQFAVLVRDL--PDLPKGQ----SRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (515)
Q Consensus 187 ~~~~TVlV~~I--P~~~~~~----~~~~~l~~~f~~~~p~~v~~v~i~~d~ 231 (515)
+..++|.+.|+ |.++.++ ...++|++.|+++ |+|.++.+.++.
T Consensus 2 ~Ps~vl~l~N~~~~~~l~~~~~~~~i~edi~~e~~k~--G~v~~v~I~~~~ 50 (104)
T d1o0pa_ 2 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY--GLVKSIEIPRPV 50 (104)
T ss_dssp CCCSEEEEESSCCTTTTTSHHHHHHHHHHHHHHHTTT--SCEEEEECCCCT
T ss_pred CCCcEEEEeCCCCHHHcCCchhHHHHHHHHHHHhccc--CceEEEEEeecC
Confidence 35788999999 8888761 2234566667665 788898887653
No 94
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.66 E-value=1.7 Score=31.47 Aligned_cols=21 Identities=19% Similarity=0.124 Sum_probs=18.0
Q ss_pred cCCceEEEEeCCHHHHHHHHH
Q 010210 311 KQLGAALVFFTSRVAAASAAQ 331 (515)
Q Consensus 311 ~~~~~aFVtF~~~~~a~~a~q 331 (515)
+..+.|||+|.++++|..|.+
T Consensus 46 ~~kg~afV~f~~~e~a~~a~~ 66 (90)
T d1u2fa_ 46 QDKNFAFLEFRSVDETTQAMA 66 (90)
T ss_dssp TTTTEEEEEESSCTTTTTGGG
T ss_pred CCceEEEEEeCCHHHHHHHHh
Confidence 457899999999999988765
No 95
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.84 E-value=10 Score=28.33 Aligned_cols=26 Identities=12% Similarity=0.263 Sum_probs=19.3
Q ss_pred cCCceEEEEeCCH-HHHHHHHHHhccC
Q 010210 311 KQLGAALVFFTSR-VAAASAAQSLHAQ 336 (515)
Q Consensus 311 ~~~~~aFVtF~~~-~~a~~a~q~~~~~ 336 (515)
+..++|||+|.+. .+|..|.+.+...
T Consensus 45 ~~kg~gfV~F~~~~~~A~~a~~~~~~~ 71 (113)
T d1owxa_ 45 RGAKEGIILFKEKAKEALGKAKDANNG 71 (113)
T ss_dssp TTCSEEEEEESSCHHHHHHHHHHTTTS
T ss_pred cCCceEEEEecCcHHHHHHHHHHhcCC
Confidence 4578999999986 5677777766543
No 96
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.18 E-value=13 Score=27.34 Aligned_cols=38 Identities=8% Similarity=-0.081 Sum_probs=19.9
Q ss_pred HHHHHHHHhHHHHHHHHHhhhh----cccCCceEEEEeCCHH
Q 010210 287 EYYNEKIKEIIPKLEAEQKITL----KEKQLGAALVFFTSRV 324 (515)
Q Consensus 287 ~~~~~~i~~l~~~I~~~r~~~~----~~~~~~~aFVtF~~~~ 324 (515)
+.+.++.++|++.|...+++.. .......||||.++..
T Consensus 11 ~~L~~~E~~LD~li~~~~~~L~~lted~~n~k~ayVT~~Di~ 52 (101)
T d2azeb1 11 RQLQESEQQLDHLMNICTTQLRLLSEDTDSQRLAYVTCQDLR 52 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCEEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhhccCCccCHHHHh
Confidence 3344444445555544433321 1233578999998753
No 97
>d1wmib1 a.137.13.1 (B:7-67) Hypothetical protein PHS014 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=25.20 E-value=70 Score=19.48 Aligned_cols=55 Identities=9% Similarity=0.262 Sum_probs=32.1
Q ss_pred HHHHhHHHHHHHHHhhhhcccC-CceEEEEeCCHHHHHHHHHHhccCCCCcee-eeeCCCCCc
Q 010210 291 EKIKEIIPKLEAEQKITLKEKQ-LGAALVFFTSRVAAASAAQSLHAQLVDTWT-VSDAPESRE 351 (515)
Q Consensus 291 ~~i~~l~~~I~~~r~~~~~~~~-~~~aFVtF~~~~~a~~a~q~~~~~~~~~~~-v~~AP~P~D 351 (515)
++++++..+|.+.......... .. -++..-......-++.+|..|. .+.-|+|.|
T Consensus 5 kelerlkveiqrleamlmpeerded------iteeeiaellelardedpenwidaeelpeped 61 (61)
T d1wmib1 5 KELERLKVEIQRLEAMLMPEERDED------ITEEEIAELLELARDEDPENWIDAEELPEPED 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHTSCBCCCTT------CCHHHHHHHHHHHTCCCGGGEEEGGGSCCCCC
T ss_pred HHHHHHHHHHHHHHHHhCchhcccc------ccHHHHHHHHHHHhccChhhccCHHhcCCCCC
Confidence 4566777777665554321111 11 1233344445666788898885 667899987
Done!