Query 010211
Match_columns 515
No_of_seqs 276 out of 1672
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 22:20:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010211.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010211hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02762 pyruvate kinase compl 100.0 8E-123 2E-127 992.3 46.1 403 98-501 24-461 (509)
2 PLN02623 pyruvate kinase 100.0 1E-121 2E-126 992.0 48.7 452 48-501 61-528 (581)
3 PTZ00066 pyruvate kinase; Prov 100.0 6E-122 1E-126 985.5 46.1 406 96-501 35-463 (513)
4 PRK09206 pyruvate kinase; Prov 100.0 3E-121 7E-126 975.1 46.3 403 98-501 1-422 (470)
5 COG0469 PykF Pyruvate kinase [ 100.0 1E-120 2E-125 967.2 44.1 404 96-500 2-426 (477)
6 PLN02461 Probable pyruvate kin 100.0 5E-120 1E-124 971.4 46.0 405 96-501 18-460 (511)
7 PRK06247 pyruvate kinase; Prov 100.0 7E-120 1E-124 964.4 45.0 401 97-501 3-421 (476)
8 PRK06354 pyruvate kinase; Prov 100.0 8E-119 2E-123 979.8 46.8 406 96-502 5-430 (590)
9 PLN02765 pyruvate kinase 100.0 2E-118 4E-123 960.0 46.3 401 99-501 28-473 (526)
10 cd00288 Pyruvate_Kinase Pyruva 100.0 3E-118 6E-123 956.5 45.7 410 98-508 1-435 (480)
11 PRK05826 pyruvate kinase; Prov 100.0 4E-117 9E-122 944.6 46.3 404 97-501 2-425 (465)
12 TIGR01064 pyruv_kin pyruvate k 100.0 9E-110 2E-114 892.3 44.7 402 99-501 1-425 (473)
13 PTZ00300 pyruvate kinase; Prov 100.0 2E-109 5E-114 881.1 42.6 376 125-501 1-400 (454)
14 KOG2323 Pyruvate kinase [Carbo 100.0 5E-109 1E-113 873.7 33.6 418 94-511 16-459 (501)
15 PF00224 PK: Pyruvate kinase, 100.0 1E-105 3E-110 832.0 33.2 338 98-436 1-345 (348)
16 PRK06739 pyruvate kinase; Vali 100.0 3E-104 5E-109 819.3 37.9 330 100-434 2-333 (352)
17 PRK14725 pyruvate kinase; Prov 100.0 1.1E-95 2E-100 789.5 36.3 342 85-434 125-598 (608)
18 PRK08187 pyruvate kinase; Vali 100.0 7.8E-94 1.7E-98 768.4 35.3 342 85-434 119-481 (493)
19 TIGR03239 GarL 2-dehydro-3-deo 99.7 5.8E-18 1.3E-22 169.2 10.2 133 264-410 68-234 (249)
20 PRK10558 alpha-dehydro-beta-de 99.7 6.5E-18 1.4E-22 169.5 10.1 133 264-410 75-241 (256)
21 PRK10128 2-keto-3-deoxy-L-rham 99.7 2E-17 4.3E-22 167.0 10.2 130 267-410 77-241 (267)
22 COG3836 HpcH 2,4-dihydroxyhept 99.7 3.1E-17 6.7E-22 160.8 10.8 135 262-410 71-240 (255)
23 TIGR02311 HpaI 2,4-dihydroxyhe 99.6 5.3E-16 1.1E-20 155.1 10.0 130 267-410 71-235 (249)
24 PF03328 HpcH_HpaI: HpcH/HpaI 99.6 9.2E-16 2E-20 149.8 5.4 127 270-405 75-218 (221)
25 PF02887 PK_C: Pyruvate kinase 99.5 1.5E-14 3.4E-19 128.2 6.5 52 452-503 19-70 (117)
26 TIGR01418 PEP_synth phosphoeno 99.3 4.2E-12 9.1E-17 145.1 12.5 146 267-431 613-782 (782)
27 PRK06464 phosphoenolpyruvate s 99.3 5.8E-12 1.2E-16 144.1 12.6 148 266-433 619-791 (795)
28 TIGR01588 citE citrate lyase, 99.2 5.9E-11 1.3E-15 121.2 12.9 131 267-405 72-220 (288)
29 TIGR01417 PTS_I_fam phosphoeno 99.2 3.8E-11 8.1E-16 132.9 11.2 133 263-406 366-525 (565)
30 PRK11177 phosphoenolpyruvate-p 99.1 1.3E-10 2.8E-15 128.8 9.5 133 263-406 367-526 (575)
31 COG2301 CitE Citrate lyase bet 98.6 1.5E-07 3.2E-12 96.2 8.0 132 266-405 66-212 (283)
32 cd00480 malate_synt Malate syn 98.4 1.6E-05 3.6E-10 87.4 18.0 136 283-426 187-357 (511)
33 PF02896 PEP-utilizers_C: PEP- 98.3 2.3E-06 5E-11 88.1 9.1 228 97-406 16-278 (293)
34 PRK09255 malate synthase; Vali 98.3 1.8E-05 4E-10 87.1 16.1 154 256-426 183-378 (531)
35 cd00727 malate_synt_A Malate s 98.2 2.5E-05 5.4E-10 85.7 14.8 252 97-427 65-358 (511)
36 TIGR01344 malate_syn_A malate 98.1 3.6E-05 7.8E-10 84.4 14.8 141 256-406 163-346 (511)
37 PRK11061 fused phosphoenolpyru 97.4 0.00019 4.2E-09 82.5 5.9 116 279-405 549-691 (748)
38 COG1080 PtsA Phosphoenolpyruva 97.2 0.0012 2.5E-08 73.2 8.8 127 268-405 373-526 (574)
39 PLN02626 malate synthase 97.0 0.0024 5.3E-08 70.6 9.2 123 282-406 213-372 (551)
40 TIGR01828 pyru_phos_dikin pyru 97.0 0.0041 8.9E-08 72.7 11.2 135 261-406 668-850 (856)
41 PRK08649 inosine 5-monophospha 96.5 0.024 5.2E-07 60.5 11.6 120 270-406 144-285 (368)
42 PRK09279 pyruvate phosphate di 96.5 0.0096 2.1E-07 69.8 9.4 135 261-406 674-856 (879)
43 PF00478 IMPDH: IMP dehydrogen 96.2 0.1 2.3E-06 55.4 14.4 122 267-405 107-239 (352)
44 cd00381 IMPDH IMPDH: The catal 95.9 0.2 4.3E-06 52.5 14.5 123 267-405 93-225 (325)
45 TIGR02751 PEPCase_arch phospho 95.7 0.025 5.5E-07 62.4 7.5 91 280-370 122-247 (506)
46 PTZ00314 inosine-5'-monophosph 95.4 0.28 6E-06 54.4 14.3 124 266-406 239-373 (495)
47 PRK13655 phosphoenolpyruvate c 95.2 0.065 1.4E-06 59.1 8.4 93 278-370 119-239 (494)
48 TIGR01304 IMP_DH_rel_2 IMP deh 95.0 0.18 3.8E-06 54.0 10.7 119 271-406 146-284 (369)
49 PRK05096 guanosine 5'-monophos 94.1 0.99 2.1E-05 47.9 13.6 125 266-406 106-242 (346)
50 PRK00009 phosphoenolpyruvate c 94.1 0.2 4.2E-06 59.3 9.3 93 279-371 485-605 (911)
51 TIGR01302 IMP_dehydrog inosine 94.1 1 2.2E-05 49.3 14.3 126 266-406 222-356 (450)
52 COG3605 PtsP Signal transducti 94.0 0.11 2.3E-06 58.2 6.5 120 282-413 560-706 (756)
53 PLN02274 inosine-5'-monophosph 94.0 0.78 1.7E-05 51.0 13.4 125 266-406 246-380 (505)
54 TIGR01305 GMP_reduct_1 guanosi 93.9 1.3 2.9E-05 46.9 14.1 125 266-406 105-241 (343)
55 PRK07807 inosine 5-monophospha 93.6 1.1 2.3E-05 49.7 13.3 127 265-405 224-358 (479)
56 PRK08883 ribulose-phosphate 3- 93.6 1.6 3.5E-05 43.4 13.4 138 271-428 72-217 (220)
57 COG0574 PpsA Phosphoenolpyruva 93.5 0.48 1E-05 55.0 11.0 112 283-406 597-723 (740)
58 cd00958 DhnA Class I fructose- 93.3 1.6 3.6E-05 42.9 13.0 71 266-341 141-218 (235)
59 PRK06843 inosine 5-monophospha 93.0 1.8 3.9E-05 47.0 13.7 125 266-406 151-285 (404)
60 PRK08745 ribulose-phosphate 3- 92.7 3.6 7.9E-05 41.1 14.5 140 271-428 76-221 (223)
61 TIGR03151 enACPred_II putative 92.6 2 4.4E-05 44.7 13.0 113 270-406 77-190 (307)
62 PRK07107 inosine 5-monophospha 92.4 1.6 3.5E-05 48.5 12.8 122 270-406 244-381 (502)
63 PTZ00170 D-ribulose-5-phosphat 92.4 2.4 5.2E-05 42.2 12.8 138 271-428 79-223 (228)
64 cd07944 DRE_TIM_HOA_like 4-hyd 91.7 12 0.00027 38.0 17.3 157 252-430 9-181 (266)
65 PTZ00398 phosphoenolpyruvate c 91.7 0.74 1.6E-05 55.0 9.5 143 281-424 546-717 (974)
66 PRK01130 N-acetylmannosamine-6 91.5 4.1 8.9E-05 39.8 13.2 131 270-425 78-218 (221)
67 PRK05458 guanosine 5'-monophos 91.5 3.9 8.5E-05 43.2 13.7 125 266-407 95-231 (326)
68 cd00429 RPE Ribulose-5-phospha 91.4 3.3 7.2E-05 39.4 12.2 135 272-422 72-210 (211)
69 cd03174 DRE_TIM_metallolyase D 91.3 12 0.00027 36.9 16.6 158 265-430 16-189 (265)
70 cd04730 NPD_like 2-Nitropropan 91.2 4.3 9.2E-05 39.7 13.0 114 270-406 70-185 (236)
71 TIGR01949 AroFGH_arch predicte 90.6 4.9 0.00011 40.5 13.0 77 274-359 163-245 (258)
72 PF14010 PEPcase_2: Phosphoeno 90.2 0.3 6.5E-06 53.9 4.2 142 279-430 119-302 (491)
73 cd00958 DhnA Class I fructose- 90.2 5.5 0.00012 39.2 12.7 142 263-428 16-177 (235)
74 TIGR01306 GMP_reduct_2 guanosi 90.1 8.1 0.00018 40.8 14.5 124 265-406 91-227 (321)
75 TIGR01163 rpe ribulose-phospha 90.0 7.1 0.00015 37.2 13.1 135 271-421 70-208 (210)
76 PRK05581 ribulose-phosphate 3- 89.9 8.3 0.00018 37.2 13.5 139 271-425 75-217 (220)
77 PRK13125 trpA tryptophan synth 89.8 7.5 0.00016 38.9 13.5 115 272-406 93-214 (244)
78 cd07945 DRE_TIM_CMS Leptospira 89.5 7.1 0.00015 40.2 13.3 167 250-429 6-189 (280)
79 PRK09722 allulose-6-phosphate 89.3 9.8 0.00021 38.3 13.8 142 271-430 73-223 (229)
80 cd02940 DHPD_FMN Dihydropyrimi 89.2 7.6 0.00016 40.0 13.3 126 268-408 113-283 (299)
81 cd00945 Aldolase_Class_I Class 89.0 15 0.00032 34.2 14.1 120 271-406 17-149 (201)
82 cd04740 DHOD_1B_like Dihydroor 89.0 23 0.00049 36.1 16.6 129 268-411 102-265 (296)
83 PRK00694 4-hydroxy-3-methylbut 88.9 4.7 0.0001 45.5 12.1 155 268-434 46-232 (606)
84 cd04726 KGPDC_HPS 3-Keto-L-gul 88.7 13 0.00027 35.5 13.7 130 272-420 69-200 (202)
85 PTZ00005 phosphoglycerate kina 88.7 3.8 8.3E-05 44.7 11.1 262 114-437 45-339 (417)
86 PRK05567 inosine 5'-monophosph 88.4 8.4 0.00018 42.6 13.8 122 269-406 229-360 (486)
87 PF01791 DeoC: DeoC/LacD famil 88.2 2.5 5.4E-05 41.9 8.8 152 263-430 13-189 (236)
88 PLN03034 phosphoglycerate kina 87.2 4.3 9.4E-05 45.0 10.5 295 115-473 122-446 (481)
89 PLN02334 ribulose-phosphate 3- 87.1 19 0.00041 35.5 14.2 141 272-429 80-225 (229)
90 TIGR01303 IMP_DH_rel_1 IMP deh 87.0 7.4 0.00016 43.2 12.3 126 265-406 222-357 (475)
91 cd00331 IGPS Indole-3-glycerol 86.7 15 0.00033 35.6 13.2 129 272-421 86-216 (217)
92 PRK08318 dihydropyrimidine deh 86.6 14 0.00031 39.8 14.0 103 291-408 152-284 (420)
93 TIGR03128 RuMP_HxlA 3-hexulose 86.3 32 0.00069 33.0 15.0 136 272-425 68-205 (206)
94 COG2352 Ppc Phosphoenolpyruvat 86.1 1.4 3.1E-05 51.3 6.3 122 247-370 447-601 (910)
95 PRK00915 2-isopropylmalate syn 85.8 25 0.00055 39.3 15.8 152 265-429 23-191 (513)
96 cd00452 KDPG_aldolase KDPG and 85.7 17 0.00036 34.9 12.7 103 271-406 20-124 (190)
97 PRK02290 3-dehydroquinate synt 85.7 9.5 0.00021 40.6 11.7 132 267-428 13-160 (344)
98 PRK13813 orotidine 5'-phosphat 85.6 9 0.00019 37.2 10.9 132 274-428 74-214 (215)
99 PF00311 PEPcase: Phosphoenolp 85.4 2 4.3E-05 50.5 7.2 92 280-371 363-482 (794)
100 KOG2550 IMP dehydrogenase/GMP 85.4 3.6 7.8E-05 44.8 8.5 123 267-405 250-382 (503)
101 TIGR02090 LEU1_arch isopropylm 85.3 34 0.00074 36.4 15.9 155 265-429 19-183 (363)
102 PRK15452 putative protease; Pr 85.2 3.6 7.8E-05 45.2 8.7 91 268-374 11-119 (443)
103 cd02810 DHOD_DHPD_FMN Dihydroo 85.1 18 0.00038 36.7 13.2 126 268-406 111-272 (289)
104 cd04732 HisA HisA. Phosphorib 84.9 22 0.00047 34.7 13.3 129 269-417 84-230 (234)
105 cd04729 NanE N-acetylmannosami 84.4 18 0.00039 35.3 12.5 117 270-406 82-206 (219)
106 PF01959 DHQS: 3-dehydroquinat 84.2 7.4 0.00016 41.6 10.1 130 270-428 15-169 (354)
107 cd04724 Tryptophan_synthase_al 83.9 25 0.00054 35.2 13.4 100 261-371 9-135 (242)
108 PRK07565 dihydroorotate dehydr 83.7 21 0.00045 37.4 13.3 140 274-433 121-290 (334)
109 PRK14057 epimerase; Provisiona 83.4 31 0.00067 35.4 13.9 139 272-430 90-245 (254)
110 PRK07695 transcriptional regul 83.1 21 0.00046 34.3 12.2 130 274-427 67-198 (201)
111 PRK02048 4-hydroxy-3-methylbut 83.1 13 0.00028 42.4 11.9 150 268-426 42-223 (611)
112 PRK08227 autoinducer 2 aldolas 83.0 7.9 0.00017 39.8 9.5 141 272-427 99-247 (264)
113 PF04551 GcpE: GcpE protein; 83.0 5.7 0.00012 42.5 8.7 153 270-430 34-201 (359)
114 PRK00507 deoxyribose-phosphate 83.0 19 0.0004 36.0 11.9 150 262-426 16-176 (221)
115 cd04722 TIM_phosphate_binding 82.8 27 0.0006 31.7 12.4 120 273-406 77-199 (200)
116 TIGR01037 pyrD_sub1_fam dihydr 82.7 56 0.0012 33.4 15.8 104 290-408 140-265 (300)
117 PRK08091 ribulose-phosphate 3- 82.7 42 0.00092 33.8 14.4 134 271-424 82-225 (228)
118 COG0036 Rpe Pentose-5-phosphat 82.6 22 0.00048 35.7 12.2 70 271-347 75-144 (220)
119 PRK04302 triosephosphate isome 82.0 17 0.00036 35.9 11.2 136 273-423 78-219 (223)
120 PF00682 HMGL-like: HMGL-like 81.6 40 0.00087 33.0 13.8 158 265-430 11-180 (237)
121 PF00478 IMPDH: IMP dehydrogen 81.6 3.2 7E-05 44.3 6.3 51 99-149 95-145 (352)
122 PF00834 Ribul_P_3_epim: Ribul 81.2 7.8 0.00017 38.1 8.4 115 272-405 72-193 (201)
123 cd07939 DRE_TIM_NifV Streptomy 80.9 65 0.0014 32.4 16.3 155 264-429 16-181 (259)
124 PRK08999 hypothetical protein; 80.7 21 0.00046 36.6 11.9 42 114-155 147-188 (312)
125 CHL00200 trpA tryptophan synth 80.6 53 0.0012 33.7 14.5 119 271-405 110-230 (263)
126 PRK07028 bifunctional hexulose 80.4 31 0.00067 37.4 13.5 138 272-427 73-211 (430)
127 PRK05581 ribulose-phosphate 3- 80.4 34 0.00073 33.0 12.6 131 271-428 20-163 (220)
128 TIGR00612 ispG_gcpE 1-hydroxy- 80.3 16 0.00034 39.0 10.7 144 271-430 38-192 (346)
129 TIGR00007 phosphoribosylformim 80.3 21 0.00045 34.9 11.2 128 268-415 82-227 (230)
130 TIGR01949 AroFGH_arch predicte 80.3 28 0.0006 35.1 12.3 146 263-428 31-190 (258)
131 cd07948 DRE_TIM_HCS Saccharomy 80.2 73 0.0016 32.5 16.8 164 249-428 8-182 (262)
132 PRK13210 putative L-xylulose 5 79.6 58 0.0013 32.4 14.3 143 271-420 20-198 (284)
133 PRK07315 fructose-bisphosphate 79.5 21 0.00045 37.2 11.3 125 299-429 68-200 (293)
134 PRK00278 trpC indole-3-glycero 79.1 56 0.0012 33.2 14.1 130 272-422 125-256 (260)
135 COG0826 Collagenase and relate 79.1 32 0.00069 36.7 12.8 117 268-410 14-148 (347)
136 PRK09389 (R)-citramalate synth 79.0 83 0.0018 35.1 16.5 154 265-428 21-184 (488)
137 PRK11858 aksA trans-homoaconit 79.0 60 0.0013 34.8 15.0 155 265-429 23-187 (378)
138 TIGR00973 leuA_bact 2-isopropy 79.0 51 0.0011 36.8 14.8 160 252-429 12-188 (494)
139 cd02803 OYE_like_FMN_family Ol 78.9 34 0.00073 35.3 12.7 132 263-406 129-311 (327)
140 PLN02591 tryptophan synthase 78.9 56 0.0012 33.3 14.0 118 271-406 97-218 (250)
141 PRK00043 thiE thiamine-phospha 78.8 41 0.00088 32.1 12.5 131 273-429 74-211 (212)
142 cd04726 KGPDC_HPS 3-Keto-L-gul 78.5 22 0.00048 33.8 10.5 118 266-406 11-133 (202)
143 PRK13307 bifunctional formalde 78.4 49 0.0011 36.0 14.0 133 273-426 243-378 (391)
144 TIGR00126 deoC deoxyribose-pho 77.9 43 0.00093 33.3 12.5 152 262-428 12-174 (211)
145 PF03102 NeuB: NeuB family; I 77.7 17 0.00037 36.9 9.8 99 292-417 55-155 (241)
146 PRK08005 epimerase; Validated 77.5 58 0.0013 32.4 13.3 133 271-423 72-208 (210)
147 PRK07259 dihydroorotate dehydr 77.4 90 0.0019 32.0 15.3 127 267-408 103-265 (301)
148 cd04742 NPD_FabD 2-Nitropropan 77.3 55 0.0012 36.0 14.1 123 270-405 85-247 (418)
149 cd00408 DHDPS-like Dihydrodipi 77.0 16 0.00035 36.8 9.5 97 271-371 22-129 (281)
150 PRK14024 phosphoribosyl isomer 76.1 45 0.00098 33.3 12.3 135 268-419 85-235 (241)
151 cd00381 IMPDH IMPDH: The catal 75.7 5.6 0.00012 41.8 6.0 48 103-150 85-132 (325)
152 PRK06512 thiamine-phosphate py 75.6 33 0.00071 34.2 11.0 134 273-428 80-214 (221)
153 PRK07709 fructose-bisphosphate 75.2 22 0.00048 36.9 10.0 117 308-429 77-202 (285)
154 TIGR01163 rpe ribulose-phospha 75.1 78 0.0017 30.1 14.8 136 271-430 15-160 (210)
155 cd00954 NAL N-Acetylneuraminic 75.1 15 0.00032 37.6 8.7 97 271-371 25-134 (288)
156 TIGR00977 LeuA_rel 2-isopropyl 74.3 94 0.002 35.1 15.4 170 251-430 11-197 (526)
157 PF03060 NMO: Nitronate monoox 74.2 44 0.00096 35.0 12.2 113 269-405 102-218 (330)
158 TIGR00736 nifR3_rel_arch TIM-b 74.2 79 0.0017 31.9 13.4 98 289-407 117-221 (231)
159 TIGR01859 fruc_bis_ald_ fructo 74.2 43 0.00093 34.6 11.8 118 309-430 75-200 (282)
160 TIGR00262 trpA tryptophan synt 74.1 59 0.0013 33.0 12.7 118 271-406 106-227 (256)
161 PRK02615 thiamine-phosphate py 73.9 34 0.00073 36.6 11.2 53 103-155 149-201 (347)
162 TIGR03569 NeuB_NnaB N-acetylne 73.6 54 0.0012 34.8 12.6 89 293-406 76-169 (329)
163 TIGR02660 nifV_homocitr homoci 73.6 51 0.0011 35.1 12.6 154 265-429 20-184 (365)
164 PF01274 Malate_synthase: Mala 73.5 9.5 0.00021 42.9 7.3 123 282-406 205-364 (526)
165 COG1465 Predicted alternative 73.4 40 0.00087 35.5 11.1 132 271-431 19-194 (376)
166 PRK07315 fructose-bisphosphate 73.3 1.1E+02 0.0023 32.0 14.5 51 103-155 80-130 (293)
167 PRK07998 gatY putative fructos 73.0 19 0.00041 37.4 8.9 118 307-429 73-198 (283)
168 PRK03620 5-dehydro-4-deoxygluc 72.9 36 0.00079 35.2 11.0 97 271-371 32-138 (303)
169 TIGR00674 dapA dihydrodipicoli 72.7 18 0.00039 36.9 8.7 97 271-371 23-130 (285)
170 PLN02746 hydroxymethylglutaryl 72.7 60 0.0013 34.7 12.8 164 250-429 55-239 (347)
171 cd04728 ThiG Thiazole synthase 72.2 97 0.0021 31.8 13.4 73 343-431 157-229 (248)
172 PRK03170 dihydrodipicolinate s 71.4 21 0.00046 36.4 8.9 97 271-371 26-133 (292)
173 PLN02925 4-hydroxy-3-methylbut 71.2 14 0.00031 42.8 8.0 153 269-431 112-294 (733)
174 PRK07428 nicotinate-nucleotide 71.0 15 0.00032 38.3 7.6 66 268-338 204-272 (288)
175 COG0119 LeuA Isopropylmalate/h 70.9 67 0.0015 35.1 12.9 165 252-430 13-189 (409)
176 cd00950 DHDPS Dihydrodipicolin 70.7 22 0.00047 36.1 8.7 97 271-371 25-132 (284)
177 cd07940 DRE_TIM_IPMS 2-isoprop 70.5 1.3E+02 0.0027 30.5 16.0 155 265-430 17-186 (268)
178 cd02932 OYE_YqiM_FMN Old yello 70.3 55 0.0012 34.2 11.8 130 264-406 143-320 (336)
179 PRK07226 fructose-bisphosphate 70.3 28 0.0006 35.4 9.3 144 263-428 34-194 (267)
180 PRK05718 keto-hydroxyglutarate 70.1 25 0.00054 34.9 8.7 108 283-405 17-134 (212)
181 cd00331 IGPS Indole-3-glycerol 70.1 1E+02 0.0022 29.8 13.0 112 266-408 29-150 (217)
182 cd00377 ICL_PEPM Members of th 70.0 25 0.00055 35.3 8.9 111 271-405 88-225 (243)
183 PRK13397 3-deoxy-7-phosphohept 69.4 89 0.0019 32.0 12.6 88 294-406 67-156 (250)
184 cd00429 RPE Ribulose-5-phospha 69.3 1E+02 0.0023 29.1 15.5 133 271-430 16-161 (211)
185 PRK04147 N-acetylneuraminate l 69.3 38 0.00083 34.7 10.2 97 271-371 28-136 (293)
186 PRK05283 deoxyribose-phosphate 69.2 79 0.0017 32.5 12.2 154 262-429 20-190 (257)
187 cd02809 alpha_hydroxyacid_oxid 69.1 91 0.002 32.1 12.9 113 271-407 133-257 (299)
188 PRK04180 pyridoxal biosynthesi 68.6 63 0.0014 33.9 11.5 117 287-435 58-176 (293)
189 PRK00208 thiG thiazole synthas 68.5 1.3E+02 0.0028 30.9 13.4 71 345-431 159-229 (250)
190 TIGR01302 IMP_dehydrog inosine 68.4 9.1 0.0002 41.9 5.7 49 101-149 213-261 (450)
191 PRK13398 3-deoxy-7-phosphohept 68.4 81 0.0017 32.4 12.2 106 292-421 77-185 (266)
192 PRK00286 xseA exodeoxyribonucl 68.3 1.5E+02 0.0032 32.3 15.0 192 142-371 10-230 (438)
193 cd00951 KDGDH 5-dehydro-4-deox 68.2 52 0.0011 33.8 10.9 97 271-371 25-131 (289)
194 PLN02321 2-isopropylmalate syn 68.2 75 0.0016 36.8 13.0 160 252-429 97-282 (632)
195 PRK00311 panB 3-methyl-2-oxobu 67.8 81 0.0018 32.5 12.1 147 263-430 18-196 (264)
196 COG0352 ThiE Thiamine monophos 67.8 72 0.0016 31.8 11.4 134 273-428 74-208 (211)
197 COG0274 DeoC Deoxyribose-phosp 67.7 37 0.0008 34.3 9.3 149 262-426 18-180 (228)
198 cd02811 IDI-2_FMN Isopentenyl- 67.7 1.2E+02 0.0026 31.8 13.7 54 365-431 255-311 (326)
199 cd06557 KPHMT-like Ketopantoat 67.6 66 0.0014 32.9 11.3 146 264-430 16-193 (254)
200 cd00959 DeoC 2-deoxyribose-5-p 67.6 90 0.0019 30.3 11.9 144 263-427 12-172 (203)
201 PRK05286 dihydroorotate dehydr 67.5 1E+02 0.0022 32.6 13.1 90 308-409 211-321 (344)
202 PLN02417 dihydrodipicolinate s 67.4 25 0.00055 35.9 8.4 95 271-371 26-131 (280)
203 TIGR02814 pfaD_fam PfaD family 67.4 96 0.0021 34.4 13.2 122 270-405 90-252 (444)
204 cd00405 PRAI Phosphoribosylant 67.2 53 0.0011 31.6 10.2 118 269-410 8-131 (203)
205 PRK00366 ispG 4-hydroxy-3-meth 67.2 55 0.0012 35.2 10.9 145 271-430 46-201 (360)
206 cd04737 LOX_like_FMN L-Lactate 66.9 92 0.002 33.4 12.7 93 291-406 209-305 (351)
207 COG0329 DapA Dihydrodipicolina 66.7 35 0.00075 35.5 9.3 97 271-371 29-136 (299)
208 KOG3974 Predicted sugar kinase 66.6 33 0.00072 35.6 8.8 112 276-397 53-176 (306)
209 TIGR00683 nanA N-acetylneurami 66.5 69 0.0015 33.0 11.4 97 271-371 25-134 (290)
210 PRK05096 guanosine 5'-monophos 66.4 12 0.00025 40.0 5.8 48 102-149 98-147 (346)
211 PRK06015 keto-hydroxyglutarate 66.4 27 0.00059 34.5 8.0 41 353-407 85-125 (201)
212 PRK07084 fructose-bisphosphate 66.2 45 0.00098 35.3 10.1 119 307-429 84-215 (321)
213 cd00952 CHBPH_aldolase Trans-o 66.1 1.1E+02 0.0023 31.9 12.8 97 271-371 33-141 (309)
214 PRK10737 FKBP-type peptidyl-pr 65.9 18 0.00038 35.7 6.6 59 180-238 51-118 (196)
215 PRK00043 thiE thiamine-phospha 65.7 1E+02 0.0023 29.2 11.9 102 270-406 24-131 (212)
216 PRK08610 fructose-bisphosphate 65.6 54 0.0012 34.2 10.4 116 308-429 77-202 (286)
217 PRK15447 putative protease; Pr 65.2 37 0.0008 35.2 9.2 66 331-405 29-94 (301)
218 cd04738 DHOD_2_like Dihydrooro 65.2 1.1E+02 0.0024 32.0 12.8 92 306-409 200-312 (327)
219 TIGR02313 HpaI-NOT-DapA 2,4-di 65.0 74 0.0016 32.8 11.3 97 271-371 25-133 (294)
220 PRK05692 hydroxymethylglutaryl 64.9 1.8E+02 0.0038 30.1 14.8 166 250-429 13-197 (287)
221 KOG3111 D-ribulose-5-phosphate 64.4 1.6E+02 0.0035 29.5 13.7 134 277-430 84-221 (224)
222 PRK00278 trpC indole-3-glycero 64.0 1.1E+02 0.0023 31.2 12.0 111 269-407 71-188 (260)
223 PRK04452 acetyl-CoA decarbonyl 63.9 1.3E+02 0.0027 32.0 12.8 149 267-429 136-312 (319)
224 cd04727 pdxS PdxS is a subunit 63.8 97 0.0021 32.4 11.7 115 289-435 51-167 (283)
225 PRK12738 kbaY tagatose-bisphos 63.8 69 0.0015 33.4 10.8 119 307-429 73-201 (286)
226 TIGR03128 RuMP_HxlA 3-hexulose 63.7 1.4E+02 0.003 28.5 12.5 121 264-406 8-133 (206)
227 TIGR01305 GMP_reduct_1 guanosi 63.4 15 0.00033 39.2 5.9 48 102-149 97-146 (343)
228 PRK02615 thiamine-phosphate py 63.3 75 0.0016 34.0 11.2 129 275-428 212-344 (347)
229 TIGR03586 PseI pseudaminic aci 63.2 1.2E+02 0.0026 32.2 12.6 67 321-407 100-169 (327)
230 PRK13209 L-xylulose 5-phosphat 63.1 1.3E+02 0.0029 29.9 12.6 40 271-310 25-74 (283)
231 PRK12595 bifunctional 3-deoxy- 63.0 63 0.0014 34.7 10.6 89 293-406 169-259 (360)
232 PRK05458 guanosine 5'-monophos 62.8 13 0.00028 39.4 5.3 45 105-149 90-136 (326)
233 PRK09856 fructoselysine 3-epim 62.4 1.4E+02 0.0031 29.6 12.6 121 271-396 17-171 (275)
234 PF05690 ThiG: Thiazole biosyn 62.3 47 0.001 33.9 8.9 81 331-427 145-225 (247)
235 PRK06843 inosine 5-monophospha 62.2 14 0.00029 40.4 5.5 50 100-149 141-190 (404)
236 PRK07226 fructose-bisphosphate 62.1 1.1E+02 0.0024 31.0 11.9 57 364-428 195-253 (267)
237 PRK08195 4-hyroxy-2-oxovalerat 62.0 2.2E+02 0.0047 30.2 17.2 147 265-429 22-186 (337)
238 PRK15447 putative protease; Pr 61.8 41 0.00088 34.9 8.8 116 269-410 16-142 (301)
239 PRK05835 fructose-bisphosphate 61.7 74 0.0016 33.6 10.6 118 308-429 74-203 (307)
240 COG0821 gcpE 1-hydroxy-2-methy 61.6 2.4E+02 0.0051 30.5 14.6 142 273-430 42-194 (361)
241 TIGR00343 pyridoxal 5'-phospha 61.4 1.1E+02 0.0024 32.1 11.5 113 288-432 52-166 (287)
242 TIGR00674 dapA dihydrodipicoli 61.4 56 0.0012 33.3 9.6 97 324-430 25-124 (285)
243 cd01573 modD_like ModD; Quinol 61.0 26 0.00057 36.0 7.1 65 269-338 192-259 (272)
244 TIGR01182 eda Entner-Doudoroff 60.5 96 0.0021 30.7 10.7 101 274-406 27-128 (204)
245 PF00899 ThiF: ThiF family; I 60.1 53 0.0012 29.3 8.2 67 295-372 58-124 (135)
246 TIGR03572 WbuZ glycosyl amidat 60.1 1.6E+02 0.0035 28.8 12.3 116 270-406 86-227 (232)
247 PTZ00314 inosine-5'-monophosph 60.1 13 0.00027 41.5 4.9 45 105-149 234-278 (495)
248 PLN02274 inosine-5'-monophosph 59.9 16 0.00036 40.8 5.8 50 100-149 236-285 (505)
249 PRK15452 putative protease; Pr 59.8 34 0.00074 37.7 8.1 84 310-406 5-96 (443)
250 PRK05848 nicotinate-nucleotide 59.7 29 0.00062 35.9 7.1 65 269-338 191-258 (273)
251 PLN03228 methylthioalkylmalate 59.1 2.3E+02 0.0051 31.9 14.5 165 250-429 93-281 (503)
252 TIGR00739 yajC preprotein tran 58.6 17 0.00038 30.9 4.5 42 206-248 32-73 (84)
253 cd00947 TBP_aldolase_IIB Tagat 58.5 96 0.0021 32.1 10.7 120 307-430 68-196 (276)
254 cd07938 DRE_TIM_HMGL 3-hydroxy 58.5 2.2E+02 0.0048 29.1 14.5 163 252-428 9-190 (274)
255 TIGR01361 DAHP_synth_Bsub phos 58.5 98 0.0021 31.6 10.7 91 292-406 75-166 (260)
256 TIGR03249 KdgD 5-dehydro-4-deo 58.4 1E+02 0.0022 31.7 10.9 95 271-371 30-136 (296)
257 PF00290 Trp_syntA: Tryptophan 58.3 2.1E+02 0.0046 29.4 13.0 118 272-406 107-226 (259)
258 TIGR00167 cbbA ketose-bisphosp 58.1 1.1E+02 0.0023 32.0 11.0 117 307-429 76-205 (288)
259 TIGR01037 pyrD_sub1_fam dihydr 58.0 2.2E+02 0.0048 29.0 13.9 85 308-407 90-190 (300)
260 PRK06801 hypothetical protein; 57.7 2.1E+02 0.0045 29.8 13.0 120 306-429 72-202 (286)
261 cd04727 pdxS PdxS is a subunit 57.6 1.8E+02 0.004 30.4 12.4 139 270-428 77-247 (283)
262 PRK06552 keto-hydroxyglutarate 57.6 81 0.0018 31.3 9.7 109 283-406 15-136 (213)
263 PRK08385 nicotinate-nucleotide 57.6 37 0.00081 35.2 7.5 67 269-338 191-260 (278)
264 PF01645 Glu_synthase: Conserv 57.4 84 0.0018 34.0 10.4 151 235-406 136-303 (368)
265 PLN02424 ketopantoate hydroxym 57.1 1.5E+02 0.0033 31.6 12.0 133 261-406 36-202 (332)
266 cd04723 HisA_HisF Phosphoribos 57.0 1.7E+02 0.0037 29.1 12.0 130 269-419 89-231 (233)
267 PRK09250 fructose-bisphosphate 57.0 1.1E+02 0.0025 32.8 11.1 91 268-370 91-197 (348)
268 cd00564 TMP_TenI Thiamine mono 57.0 1.6E+02 0.0035 27.1 12.7 129 272-424 64-196 (196)
269 cd02808 GltS_FMN Glutamate syn 56.5 2.5E+02 0.0055 30.3 13.9 120 274-406 177-314 (392)
270 TIGR02708 L_lactate_ox L-lacta 56.1 82 0.0018 34.0 10.0 93 291-407 216-313 (367)
271 PRK09140 2-dehydro-3-deoxy-6-p 55.9 1.4E+02 0.003 29.4 10.9 125 266-424 20-146 (206)
272 TIGR01306 GMP_reduct_2 guanosi 55.5 23 0.0005 37.5 5.7 48 102-149 84-133 (321)
273 cd00952 CHBPH_aldolase Trans-o 55.3 96 0.0021 32.2 10.2 96 325-430 36-134 (309)
274 PRK00073 pgk phosphoglycerate 55.1 62 0.0013 35.2 9.0 296 114-474 39-361 (389)
275 cd04733 OYE_like_2_FMN Old yel 55.0 2.1E+02 0.0045 30.0 12.8 32 363-406 290-322 (338)
276 PRK07028 bifunctional hexulose 54.7 1.8E+02 0.004 31.5 12.7 127 259-406 7-138 (430)
277 cd00950 DHDPS Dihydrodipicolin 54.5 83 0.0018 31.8 9.5 97 324-430 27-126 (284)
278 PRK08417 dihydroorotase; Provi 54.4 3E+02 0.0064 29.4 15.6 102 263-373 42-151 (386)
279 TIGR02355 moeB molybdopterin s 54.3 65 0.0014 32.4 8.5 66 296-372 81-146 (240)
280 cd00408 DHDPS-like Dihydrodipi 54.3 87 0.0019 31.5 9.5 95 325-430 25-123 (281)
281 TIGR00222 panB 3-methyl-2-oxob 54.2 2E+02 0.0043 29.7 12.1 133 262-406 17-180 (263)
282 PF01729 QRPTase_C: Quinolinat 54.2 23 0.00051 33.9 5.1 63 270-337 90-155 (169)
283 PF00701 DHDPS: Dihydrodipicol 54.2 1.3E+02 0.0029 30.5 10.9 97 271-371 26-133 (289)
284 cd02922 FCB2_FMN Flavocytochro 54.0 2.3E+02 0.005 30.2 12.9 94 290-406 200-300 (344)
285 TIGR02356 adenyl_thiF thiazole 54.0 63 0.0014 31.4 8.2 66 296-372 78-143 (202)
286 COG0826 Collagenase and relate 53.9 76 0.0017 33.9 9.3 82 318-406 13-99 (347)
287 cd02933 OYE_like_FMN Old yello 53.7 2.1E+02 0.0045 30.3 12.5 125 263-406 140-314 (338)
288 cd07941 DRE_TIM_LeuA3 Desulfob 53.4 2.6E+02 0.0057 28.4 16.6 170 250-429 7-193 (273)
289 PRK09427 bifunctional indole-3 53.3 27 0.00059 38.6 6.1 110 268-405 167-283 (454)
290 PF03437 BtpA: BtpA family; I 53.0 40 0.00086 34.6 6.8 73 278-354 170-249 (254)
291 cd08205 RuBisCO_IV_RLP Ribulos 52.9 1.9E+02 0.0042 31.0 12.3 148 265-428 143-307 (367)
292 PF01136 Peptidase_U32: Peptid 52.9 27 0.00058 34.2 5.4 42 112-153 157-198 (233)
293 cd04735 OYE_like_4_FMN Old yel 52.8 1.7E+02 0.0038 30.9 11.8 87 307-406 214-313 (353)
294 PRK02083 imidazole glycerol ph 52.7 2.5E+02 0.0054 28.0 14.2 131 269-419 85-240 (253)
295 PRK08185 hypothetical protein; 52.5 1.9E+02 0.0041 30.1 11.7 119 307-429 67-197 (283)
296 cd04736 MDH_FMN Mandelate dehy 52.5 97 0.0021 33.4 9.9 94 291-406 224-318 (361)
297 cd01485 E1-1_like Ubiquitin ac 52.4 79 0.0017 30.7 8.5 66 297-372 79-145 (198)
298 TIGR02320 PEP_mutase phosphoen 52.4 2E+02 0.0043 29.9 11.9 67 271-337 96-189 (285)
299 cd04739 DHOD_like Dihydroorota 52.4 3E+02 0.0065 28.8 15.5 106 308-433 163-288 (325)
300 cd01492 Aos1_SUMO Ubiquitin ac 52.3 87 0.0019 30.4 8.8 65 296-372 78-142 (197)
301 cd00953 KDG_aldolase KDG (2-ke 52.0 1.1E+02 0.0023 31.3 9.8 93 271-371 24-127 (279)
302 PRK13308 ureC urease subunit a 52.0 4.2E+02 0.0092 30.4 18.4 131 274-421 149-288 (569)
303 PLN02495 oxidoreductase, actin 51.8 1.9E+02 0.004 31.5 11.9 48 350-407 166-215 (385)
304 TIGR00259 thylakoid_BtpA membr 51.5 54 0.0012 33.7 7.5 72 265-339 154-229 (257)
305 cd02911 arch_FMN Archeal FMN-b 51.3 98 0.0021 31.0 9.2 97 288-407 121-221 (233)
306 PRK12290 thiE thiamine-phospha 51.1 1E+02 0.0022 34.2 9.8 134 271-428 268-414 (437)
307 TIGR00693 thiE thiamine-phosph 50.6 1.8E+02 0.0038 27.5 10.5 130 272-422 65-196 (196)
308 PF01116 F_bP_aldolase: Fructo 50.5 2.2E+02 0.0047 29.6 11.8 119 307-429 72-203 (287)
309 cd04729 NanE N-acetylmannosami 50.4 2.3E+02 0.005 27.6 11.5 110 269-405 28-149 (219)
310 PRK15424 propionate catabolism 50.3 79 0.0017 35.8 9.2 163 252-424 81-264 (538)
311 PRK13111 trpA tryptophan synth 50.2 1.3E+02 0.0028 30.8 10.0 117 271-406 108-228 (258)
312 PTZ00344 pyridoxal kinase; Pro 50.1 1.1E+02 0.0024 31.3 9.6 111 261-372 53-182 (296)
313 PF04028 DUF374: Domain of unk 50.0 77 0.0017 26.5 6.9 51 109-165 17-68 (74)
314 PF07521 RMMBL: RNA-metabolisi 49.8 11 0.00024 27.9 1.7 24 125-148 7-31 (43)
315 PRK08195 4-hyroxy-2-oxovalerat 49.7 3.3E+02 0.0072 28.8 13.3 136 270-421 91-239 (337)
316 COG1646 Predicted phosphate-bi 49.6 48 0.001 33.8 6.6 88 312-426 19-119 (240)
317 PRK13585 1-(5-phosphoribosyl)- 49.6 2.6E+02 0.0057 27.4 12.7 132 268-417 86-233 (241)
318 PRK09195 gatY tagatose-bisphos 49.6 1.3E+02 0.0028 31.3 10.0 119 307-429 73-201 (284)
319 cd00945 Aldolase_Class_I Class 49.6 1.1E+02 0.0024 28.3 8.8 75 331-429 27-110 (201)
320 PF00701 DHDPS: Dihydrodipicol 49.4 1E+02 0.0023 31.3 9.2 100 323-431 27-128 (289)
321 PRK11840 bifunctional sulfur c 49.4 1.2E+02 0.0025 32.5 9.6 80 332-427 220-299 (326)
322 TIGR00736 nifR3_rel_arch TIM-b 48.9 54 0.0012 33.1 6.9 69 274-346 155-229 (231)
323 cd04731 HisF The cyclase subun 48.8 2.8E+02 0.006 27.4 13.6 46 362-419 190-236 (243)
324 PRK11750 gltB glutamate syntha 48.8 79 0.0017 39.9 9.4 136 251-405 943-1095(1485)
325 PF01261 AP_endonuc_2: Xylose 48.5 56 0.0012 30.2 6.6 97 274-370 2-130 (213)
326 PRK07695 transcriptional regul 48.4 31 0.00067 33.2 5.0 36 114-149 17-52 (201)
327 cd05565 PTS_IIB_lactose PTS_II 48.4 89 0.0019 27.5 7.4 65 291-370 13-77 (99)
328 PF04055 Radical_SAM: Radical 48.0 1.2E+02 0.0026 26.4 8.4 53 100-152 76-138 (166)
329 PF00677 Lum_binding: Lumazine 47.4 89 0.0019 26.4 7.0 54 200-255 21-82 (85)
330 cd00757 ThiF_MoeB_HesA_family 47.3 90 0.002 30.8 8.2 65 296-371 78-142 (228)
331 cd03174 DRE_TIM_metallolyase D 47.2 2.5E+02 0.0055 27.6 11.4 133 270-420 77-239 (265)
332 PRK05690 molybdopterin biosynt 47.0 88 0.0019 31.4 8.1 65 296-371 89-153 (245)
333 cd01487 E1_ThiF_like E1_ThiF_l 47.0 96 0.0021 29.4 8.0 67 295-372 54-121 (174)
334 PRK13398 3-deoxy-7-phosphohept 47.0 3E+02 0.0065 28.3 12.1 118 269-405 100-230 (266)
335 TIGR01036 pyrD_sub2 dihydrooro 46.9 2.8E+02 0.0061 29.3 12.2 89 308-408 210-319 (335)
336 cd00755 YgdL_like Family of ac 46.9 56 0.0012 32.8 6.7 83 296-393 68-151 (231)
337 smart00729 Elp3 Elongator prot 46.7 1.7E+02 0.0037 26.7 9.5 44 109-152 95-147 (216)
338 PRK07535 methyltetrahydrofolat 46.3 39 0.00086 34.5 5.6 55 114-171 28-82 (261)
339 PF01180 DHO_dh: Dihydroorotat 45.9 1.5E+02 0.0032 30.3 9.8 146 267-431 111-293 (295)
340 PRK05567 inosine 5'-monophosph 45.8 50 0.0011 36.6 6.7 50 100-149 216-265 (486)
341 PRK12857 fructose-1,6-bisphosp 45.8 1.2E+02 0.0026 31.5 9.1 118 308-429 74-201 (284)
342 PRK01130 N-acetylmannosamine-6 45.6 2.9E+02 0.0064 26.8 11.5 114 266-406 21-146 (221)
343 cd04501 SGNH_hydrolase_like_4 45.5 35 0.00077 31.4 4.8 40 333-372 64-103 (183)
344 PLN02495 oxidoreductase, actin 45.5 4.4E+02 0.0094 28.7 16.5 146 266-432 125-320 (385)
345 PRK06793 fliI flagellum-specif 45.5 4.4E+02 0.0094 29.2 13.7 246 158-432 28-295 (432)
346 cd02808 GltS_FMN Glutamate syn 45.5 47 0.001 35.9 6.3 92 269-373 226-341 (392)
347 cd01572 QPRTase Quinolinate ph 45.5 37 0.00079 34.9 5.2 63 268-338 190-255 (268)
348 TIGR02329 propionate_PrpR prop 45.5 1E+02 0.0022 34.8 9.0 177 238-425 56-258 (526)
349 PRK08644 thiamine biosynthesis 45.4 1E+02 0.0022 30.3 8.2 65 297-372 85-150 (212)
350 COG4043 Preprotein translocase 45.3 28 0.0006 31.1 3.6 30 203-233 26-55 (111)
351 PRK04147 N-acetylneuraminate l 45.2 1.9E+02 0.0041 29.6 10.4 96 324-430 30-130 (293)
352 PRK06096 molybdenum transport 45.1 46 0.00099 34.7 5.9 64 269-337 198-264 (284)
353 PRK08255 salicylyl-CoA 5-hydro 44.6 2.1E+02 0.0045 33.6 11.8 24 264-287 540-571 (765)
354 PRK07896 nicotinate-nucleotide 44.4 55 0.0012 34.2 6.3 65 269-338 208-275 (289)
355 PRK12344 putative alpha-isopro 44.3 5.1E+02 0.011 29.2 15.6 160 265-429 24-200 (524)
356 PRK10415 tRNA-dihydrouridine s 44.2 2.9E+02 0.0064 28.9 11.8 129 275-414 28-177 (321)
357 COG0042 tRNA-dihydrouridine sy 44.2 60 0.0013 34.2 6.7 64 274-342 159-233 (323)
358 PRK03170 dihydrodipicolinate s 43.7 1.7E+02 0.0036 29.9 9.7 95 325-430 29-127 (292)
359 cd04724 Tryptophan_synthase_al 43.6 2.4E+02 0.0051 28.3 10.6 117 271-405 95-214 (242)
360 PF03796 DnaB_C: DnaB-like hel 43.5 79 0.0017 31.4 7.2 86 320-406 113-212 (259)
361 PRK13399 fructose-1,6-bisphosp 43.2 2.7E+02 0.0059 29.9 11.4 122 308-429 75-224 (347)
362 TIGR01858 tag_bisphos_ald clas 42.9 2.7E+02 0.0059 28.9 11.1 133 292-429 57-199 (282)
363 TIGR01303 IMP_DH_rel_1 IMP deh 42.8 38 0.00083 37.6 5.2 50 100-149 213-262 (475)
364 PRK04169 geranylgeranylglycery 42.7 86 0.0019 31.7 7.2 70 311-405 10-82 (232)
365 PRK04180 pyridoxal biosynthesi 42.6 4.3E+02 0.0094 27.9 13.3 132 276-427 92-255 (293)
366 cd02929 TMADH_HD_FMN Trimethyl 42.6 3.6E+02 0.0078 28.8 12.4 25 263-287 138-170 (370)
367 TIGR01334 modD putative molybd 42.2 60 0.0013 33.7 6.2 72 269-345 197-277 (277)
368 cd01568 QPRTase_NadC Quinolina 42.2 41 0.00089 34.4 5.0 64 268-337 189-255 (269)
369 COG1440 CelA Phosphotransferas 42.1 1.2E+02 0.0026 27.2 7.1 62 294-370 17-78 (102)
370 PRK13523 NADPH dehydrogenase N 42.0 2E+02 0.0043 30.5 10.2 24 264-287 131-162 (337)
371 PF02599 CsrA: Global regulato 41.6 57 0.0012 25.7 4.6 30 212-242 6-35 (54)
372 cd00954 NAL N-Acetylneuraminic 41.6 1.8E+02 0.004 29.7 9.6 95 324-429 27-126 (288)
373 PRK07114 keto-hydroxyglutarate 41.6 1.2E+02 0.0027 30.3 8.2 109 283-406 17-139 (222)
374 COG0075 Serine-pyruvate aminot 41.5 2.3E+02 0.0051 30.8 10.7 33 102-141 6-38 (383)
375 cd02911 arch_FMN Archeal FMN-b 41.5 56 0.0012 32.7 5.7 60 273-339 158-222 (233)
376 PRK05886 yajC preprotein trans 41.3 44 0.00095 30.1 4.4 44 206-250 33-76 (109)
377 TIGR00343 pyridoxal 5'-phospha 41.3 3.9E+02 0.0084 28.1 11.8 56 362-428 194-250 (287)
378 PRK05585 yajC preprotein trans 41.2 51 0.0011 29.3 4.8 42 206-248 47-88 (106)
379 cd03332 LMO_FMN L-Lactate 2-mo 41.1 2.5E+02 0.0055 30.5 10.9 93 291-406 241-337 (383)
380 PLN02826 dihydroorotate dehydr 40.8 5.2E+02 0.011 28.3 17.1 88 307-406 261-370 (409)
381 PRK13957 indole-3-glycerol-pho 40.7 68 0.0015 32.8 6.2 71 268-343 159-236 (247)
382 PRK09590 celB cellobiose phosp 40.6 1.9E+02 0.0041 25.6 8.3 75 295-388 18-94 (104)
383 TIGR00875 fsa_talC_mipB fructo 40.4 76 0.0017 31.6 6.4 59 273-337 115-185 (213)
384 PLN02417 dihydrodipicolinate s 40.3 2.3E+02 0.005 28.9 10.1 95 325-429 29-126 (280)
385 cd04740 DHOD_1B_like Dihydroor 40.1 4.2E+02 0.009 26.9 13.3 88 307-406 88-186 (296)
386 PRK11858 aksA trans-homoaconit 40.0 4E+02 0.0087 28.6 12.3 137 270-422 78-239 (378)
387 KOG2550 IMP dehydrogenase/GMP 39.8 50 0.0011 36.3 5.3 46 105-150 244-289 (503)
388 TIGR00853 pts-lac PTS system, 39.6 1.5E+02 0.0032 25.6 7.3 61 295-370 20-80 (95)
389 TIGR01036 pyrD_sub2 dihydrooro 39.6 3.7E+02 0.008 28.4 11.8 51 351-409 188-247 (335)
390 PRK05742 nicotinate-nucleotide 39.5 87 0.0019 32.5 6.9 63 268-338 197-262 (277)
391 PLN02898 HMP-P kinase/thiamin- 39.2 3.1E+02 0.0067 30.4 11.6 129 275-430 362-499 (502)
392 cd08556 GDPD Glycerophosphodie 39.2 2.9E+02 0.0063 25.3 9.9 40 353-405 148-187 (189)
393 PRK00230 orotidine 5'-phosphat 39.1 1.2E+02 0.0026 30.2 7.6 39 389-427 190-228 (230)
394 PF01207 Dus: Dihydrouridine s 39.1 60 0.0013 33.8 5.7 67 270-342 141-218 (309)
395 TIGR00742 yjbN tRNA dihydrouri 38.9 71 0.0015 33.6 6.2 67 271-342 145-228 (318)
396 COG1157 FliI Flagellar biosynt 38.7 69 0.0015 35.3 6.2 91 336-433 274-366 (441)
397 PF04312 DUF460: Protein of un 38.6 32 0.00068 32.3 3.2 29 354-388 65-93 (138)
398 cd02940 DHPD_FMN Dihydropyrimi 38.4 3.8E+02 0.0081 27.6 11.4 48 350-407 152-201 (299)
399 COG1830 FbaB DhnA-type fructos 38.3 4.5E+02 0.0097 27.3 11.6 164 298-482 13-213 (265)
400 TIGR01768 GGGP-family geranylg 37.8 91 0.002 31.4 6.5 82 319-426 15-104 (223)
401 PRK12737 gatY tagatose-bisphos 37.8 3.3E+02 0.0071 28.4 10.8 124 295-429 63-201 (284)
402 PRK01712 carbon storage regula 37.3 83 0.0018 25.8 5.0 28 211-239 5-32 (64)
403 PRK03620 5-dehydro-4-deoxygluc 37.3 2.7E+02 0.0058 28.8 10.1 90 331-430 42-132 (303)
404 PF01081 Aldolase: KDPG and KH 37.2 1.6E+02 0.0035 29.0 8.0 46 353-412 89-134 (196)
405 PRK03512 thiamine-phosphate py 37.2 4.1E+02 0.009 26.1 12.0 136 272-431 71-211 (211)
406 TIGR00010 hydrolase, TatD fami 37.2 3.5E+02 0.0075 26.1 10.5 100 269-372 16-128 (252)
407 PRK15116 sulfur acceptor prote 37.1 84 0.0018 32.4 6.3 85 295-394 86-171 (268)
408 COG1862 YajC Preprotein transl 37.0 52 0.0011 29.0 4.1 43 205-248 37-79 (97)
409 TIGR00078 nadC nicotinate-nucl 37.0 42 0.0009 34.4 4.1 62 268-337 186-250 (265)
410 PF01079 Hint: Hint module; I 36.6 1.1E+02 0.0023 30.7 6.7 43 178-220 68-114 (217)
411 PF11213 DUF3006: Protein of u 36.1 68 0.0015 26.2 4.5 42 183-227 8-50 (71)
412 cd08567 GDPD_SpGDE_like Glycer 36.0 2.1E+02 0.0047 28.1 8.9 42 351-405 217-258 (263)
413 PRK07107 inosine 5-monophospha 35.9 59 0.0013 36.5 5.3 50 99-149 230-279 (502)
414 TIGR00737 nifR3_yhdG putative 35.9 5.2E+02 0.011 26.8 13.1 125 266-405 73-221 (319)
415 TIGR02313 HpaI-NOT-DapA 2,4-di 35.9 3.1E+02 0.0067 28.2 10.3 94 324-429 27-125 (294)
416 TIGR01362 KDO8P_synth 3-deoxy- 35.8 1.9E+02 0.004 30.0 8.4 137 260-405 72-220 (258)
417 cd02809 alpha_hydroxyacid_oxid 35.8 81 0.0018 32.5 6.0 68 271-342 184-261 (299)
418 PRK01362 putative translaldola 35.7 1.5E+02 0.0033 29.5 7.6 61 272-338 114-186 (214)
419 TIGR03249 KdgD 5-dehydro-4-deo 35.6 2.4E+02 0.0052 29.0 9.4 90 331-430 40-130 (296)
420 cd03316 MR_like Mandelate race 35.6 1.9E+02 0.0041 30.2 8.8 62 100-165 126-196 (357)
421 cd00423 Pterin_binding Pterin 35.5 70 0.0015 32.3 5.4 53 115-170 28-88 (258)
422 PRK08649 inosine 5-monophospha 35.5 3.1E+02 0.0068 29.6 10.5 83 309-407 132-216 (368)
423 PRK00748 1-(5-phosphoribosyl)- 35.5 4.2E+02 0.0092 25.7 12.5 127 269-415 85-229 (233)
424 TIGR02708 L_lactate_ox L-lacta 35.4 93 0.002 33.6 6.5 69 270-342 239-317 (367)
425 TIGR01521 FruBisAldo_II_B fruc 35.4 2.5E+02 0.0054 30.3 9.6 108 308-415 73-200 (347)
426 cd02922 FCB2_FMN Flavocytochro 35.2 1.1E+02 0.0024 32.6 7.0 93 270-366 224-335 (344)
427 TIGR01496 DHPS dihydropteroate 35.2 74 0.0016 32.3 5.6 54 114-170 26-87 (257)
428 COG1312 UxuA D-mannonate dehyd 35.2 39 0.00085 36.1 3.6 58 57-135 208-277 (362)
429 cd04734 OYE_like_3_FMN Old yel 35.0 5.7E+02 0.012 27.0 12.6 24 264-287 130-161 (343)
430 PRK06806 fructose-bisphosphate 34.8 2E+02 0.0043 29.8 8.7 99 308-415 74-182 (281)
431 PRK08328 hypothetical protein; 34.7 2.3E+02 0.0051 28.1 8.9 63 298-371 87-149 (231)
432 PF13473 Cupredoxin_1: Cupredo 34.6 86 0.0019 26.9 5.1 42 176-217 34-75 (104)
433 COG0710 AroD 3-dehydroquinate 34.6 5.1E+02 0.011 26.3 12.7 141 266-427 76-229 (231)
434 PLN02979 glycolate oxidase 34.5 3.1E+02 0.0067 29.8 10.2 90 291-405 211-306 (366)
435 TIGR03217 4OH_2_O_val_ald 4-hy 34.1 5.9E+02 0.013 26.9 17.1 150 265-430 21-186 (333)
436 cd02812 PcrB_like PcrB_like pr 34.1 77 0.0017 31.8 5.3 61 322-406 15-77 (219)
437 PLN02303 urease 34.1 9.2E+02 0.02 29.1 15.6 74 291-372 443-517 (837)
438 PRK12346 transaldolase A; Prov 33.9 75 0.0016 33.7 5.4 51 274-330 164-235 (316)
439 cd05845 Ig2_L1-CAM_like Second 33.8 2E+02 0.0044 24.9 7.2 67 177-245 11-82 (95)
440 PRK10415 tRNA-dihydrouridine s 33.8 3.3E+02 0.0071 28.5 10.2 101 289-406 115-224 (321)
441 TIGR00259 thylakoid_BtpA membr 33.7 3.3E+02 0.0071 28.1 9.9 97 270-372 92-207 (257)
442 PRK13396 3-deoxy-7-phosphohept 33.4 6.5E+02 0.014 27.2 12.9 77 308-406 165-242 (352)
443 PRK00568 carbon storage regula 33.2 92 0.002 26.4 4.8 27 212-239 6-32 (76)
444 PF03932 CutC: CutC family; I 33.1 4.9E+02 0.011 25.7 12.0 142 269-432 9-170 (201)
445 PRK11572 copper homeostasis pr 33.1 5.6E+02 0.012 26.3 12.5 141 269-431 10-170 (248)
446 PF01487 DHquinase_I: Type I 3 33.0 2E+02 0.0042 28.1 8.0 70 98-168 111-187 (224)
447 PRK12475 thiamine/molybdopteri 33.0 1.9E+02 0.0041 30.6 8.3 65 296-371 83-147 (338)
448 PRK11197 lldD L-lactate dehydr 32.9 6E+02 0.013 27.7 12.1 114 291-430 233-356 (381)
449 cd02810 DHOD_DHPD_FMN Dihydroo 32.8 5.3E+02 0.011 26.0 12.2 51 350-408 146-198 (289)
450 PRK09140 2-dehydro-3-deoxy-6-p 32.8 1.8E+02 0.0038 28.6 7.6 86 271-359 115-201 (206)
451 cd00377 ICL_PEPM Members of th 32.7 3.2E+02 0.0069 27.5 9.6 113 307-430 68-196 (243)
452 PTZ00411 transaldolase-like pr 32.6 98 0.0021 33.0 6.1 21 274-295 175-195 (333)
453 cd02931 ER_like_FMN Enoate red 32.5 6.6E+02 0.014 27.0 13.4 24 263-286 138-169 (382)
454 PF02310 B12-binding: B12 bind 32.5 1.5E+02 0.0032 25.5 6.3 67 274-342 45-116 (121)
455 KOG1261 Malate synthase [Energ 32.3 76 0.0017 34.7 5.2 246 91-406 91-378 (552)
456 TIGR00187 ribE riboflavin synt 32.0 1.8E+02 0.0038 28.8 7.4 55 200-256 23-85 (200)
457 PRK07807 inosine 5-monophospha 31.8 72 0.0016 35.6 5.2 46 104-149 219-264 (479)
458 cd07943 DRE_TIM_HOA 4-hydroxy- 31.8 5.4E+02 0.012 25.8 16.2 147 266-430 20-184 (263)
459 PRK05597 molybdopterin biosynt 31.7 2E+02 0.0044 30.5 8.4 65 296-371 85-149 (355)
460 PRK08762 molybdopterin biosynt 31.7 2.1E+02 0.0046 30.5 8.5 65 297-372 193-257 (376)
461 TIGR01520 FruBisAldo_II_A fruc 31.7 2.6E+02 0.0056 30.2 9.0 113 307-428 98-245 (357)
462 PRK05437 isopentenyl pyrophosp 31.7 6.6E+02 0.014 26.7 13.8 159 258-431 125-318 (352)
463 TIGR02311 HpaI 2,4-dihydroxyhe 31.6 4.3E+02 0.0094 26.6 10.3 88 298-406 3-91 (249)
464 cd07937 DRE_TIM_PC_TC_5S Pyruv 31.5 5.7E+02 0.012 26.0 15.9 152 265-430 18-192 (275)
465 cd00452 KDPG_aldolase KDPG and 31.5 4.6E+02 0.0099 25.0 10.1 104 270-409 66-174 (190)
466 cd04732 HisA HisA. Phosphorib 31.5 2.9E+02 0.0063 26.8 8.9 76 331-429 43-119 (234)
467 PF01026 TatD_DNase: TatD rela 31.3 2.6E+02 0.0056 27.9 8.7 99 271-372 18-131 (255)
468 cd05722 Ig1_Neogenin First imm 31.2 2.6E+02 0.0057 23.0 7.4 73 178-250 8-89 (95)
469 PRK10605 N-ethylmaleimide redu 31.1 6.8E+02 0.015 26.7 12.6 23 264-286 148-178 (362)
470 cd02930 DCR_FMN 2,4-dienoyl-Co 31.0 5.4E+02 0.012 27.1 11.4 23 264-286 126-156 (353)
471 PRK11815 tRNA-dihydrouridine s 31.0 1.1E+02 0.0023 32.3 6.1 65 270-339 154-235 (333)
472 TIGR00381 cdhD CO dehydrogenas 30.9 7E+02 0.015 27.4 12.1 151 267-430 200-374 (389)
473 PRK09196 fructose-1,6-bisphosp 30.8 4E+02 0.0087 28.7 10.3 122 308-429 75-224 (347)
474 PF09370 TIM-br_sig_trns: TIM- 30.8 1.5E+02 0.0032 30.9 6.7 62 104-168 151-223 (268)
475 cd04737 LOX_like_FMN L-Lactate 30.7 1.4E+02 0.0031 31.9 7.0 92 271-366 233-340 (351)
476 PRK09250 fructose-bisphosphate 30.6 3.9E+02 0.0085 28.8 10.1 96 320-432 89-191 (348)
477 PRK10550 tRNA-dihydrouridine s 30.6 90 0.002 32.7 5.4 63 274-342 155-229 (312)
478 PF03437 BtpA: BtpA family; I 30.3 2.2E+02 0.0047 29.3 8.0 45 389-433 32-79 (254)
479 PRK07877 hypothetical protein; 30.2 1.9E+02 0.0041 34.1 8.4 66 296-372 163-228 (722)
480 cd01822 Lysophospholipase_L1_l 30.1 95 0.0021 28.1 4.9 53 320-372 52-108 (177)
481 PRK12457 2-dehydro-3-deoxyphos 30.0 3.7E+02 0.008 28.2 9.5 126 260-405 86-236 (281)
482 cd08579 GDPD_memb_like Glycero 29.9 2.7E+02 0.0059 26.9 8.4 41 352-405 177-217 (220)
483 cd00019 AP2Ec AP endonuclease 29.8 3E+02 0.0065 27.5 8.9 100 271-370 14-141 (279)
484 PLN02535 glycolate oxidase 29.8 90 0.0019 33.7 5.3 68 271-342 235-312 (364)
485 TIGR03425 urea_degr_2 urea car 29.8 1.2E+02 0.0026 30.8 5.9 54 178-231 14-81 (233)
486 PRK08223 hypothetical protein; 29.8 2.7E+02 0.0058 29.1 8.6 65 297-371 85-150 (287)
487 PLN02741 riboflavin synthase 29.8 2.4E+02 0.0053 27.7 7.9 55 200-256 24-85 (194)
488 cd06556 ICL_KPHMT Members of t 29.8 6E+02 0.013 25.7 12.9 87 308-406 73-176 (240)
489 PRK07688 thiamine/molybdopteri 29.7 2.3E+02 0.005 30.0 8.3 65 297-372 84-148 (339)
490 COG0069 GltB Glutamate synthas 29.7 2.5E+02 0.0055 31.6 8.8 150 235-405 236-402 (485)
491 PRK08072 nicotinate-nucleotide 29.7 1.2E+02 0.0027 31.3 6.1 67 266-338 194-261 (277)
492 COG1902 NemA NADH:flavin oxido 29.6 7.3E+02 0.016 26.7 12.1 136 262-410 136-322 (363)
493 COG2070 Dioxygenases related t 29.6 4.2E+02 0.009 28.2 10.2 111 271-404 94-211 (336)
494 CHL00162 thiG thiamin biosynth 29.6 2.4E+02 0.0052 29.3 8.0 50 364-425 188-237 (267)
495 PRK13587 1-(5-phosphoribosyl)- 29.6 5.8E+02 0.013 25.4 12.3 118 269-406 87-221 (234)
496 PF07679 I-set: Immunoglobulin 29.5 2.9E+02 0.0062 21.9 7.9 68 177-245 8-79 (90)
497 PRK14852 hypothetical protein; 29.4 1.9E+02 0.004 35.4 8.2 66 298-372 391-456 (989)
498 PRK10425 DNase TatD; Provision 29.4 5.8E+02 0.012 25.9 10.9 100 269-372 16-128 (258)
499 PRK15108 biotin synthase; Prov 29.4 1.4E+02 0.003 31.7 6.6 47 102-150 126-180 (345)
500 PRK06096 molybdenum transport 29.3 5E+02 0.011 27.1 10.5 104 300-427 115-231 (284)
No 1
>PLN02762 pyruvate kinase complex alpha subunit
Probab=100.00 E-value=8.5e-123 Score=992.29 Aligned_cols=403 Identities=45% Similarity=0.655 Sum_probs=379.3
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEEecCCCeeeeeccCC
Q 010211 98 RRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQ 177 (515)
Q Consensus 98 ~r~TKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~I~lDL~GPkIRtG~l~~ 177 (515)
+|||||||||||+|+++|+|++|+++||||||||||||++++|+++|+++|++++++| ++++||+||||||||||.+++
T Consensus 24 ~rrTKIV~TiGPas~~~e~l~~li~aGm~v~RlNfSHg~~e~h~~~i~~iR~~~~~~~-~~vaIl~Dl~GPkIR~g~~~~ 102 (509)
T PLN02762 24 TRRTKLVCTIGPACCGFEQLEALAMGGMNVARLNMCHGTREWHRDVIRRVRRLNEEKG-FAVAVMMDTEGSEIHMGDLGG 102 (509)
T ss_pred CCCceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcC-CceEEEecCCCCceEEEecCC
Confidence 7899999999999999999999999999999999999999999999999999999998 999999999999999999965
Q ss_pred --cEEEecCCEEEEEeecCCC--CcceEEecccccccccCcCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEeccCcee
Q 010211 178 --PIILKEGQEFNFTIKRGVS--TEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHL 253 (515)
Q Consensus 178 --~i~L~~G~~v~lt~~~~~~--~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~~~~~~v~~~V~~gG~L~s~KgV 253 (515)
++.|++||+|+|+.+...+ +++.++++|++|+++|++||.||+|||+|.|+|++++++.++|+|.+||.|++||||
T Consensus 103 ~~~i~l~~G~~v~lt~~~~~g~~~~~~i~v~y~~l~~~v~~Gd~IlidDG~i~l~V~~~~~~~v~~~v~~~G~l~~~Kgv 182 (509)
T PLN02762 103 ASSAKAEDGEEWTFTVRKFDGSRPEFTIQVNYDGFAEDVKVGDELVVDGGMVRFEVIEKIGPDVKCKCTDPGLLLPRANL 182 (509)
T ss_pred CccEEecCCCEEEEeCCccCCCCCCcEEeechHHHHHhcCCCCEEEEeCCEEEEEEEEEECCEEEEEEEeCcEEcCCCce
Confidence 6999999999999764334 357899999999999999999999999999999999999999999999999999999
Q ss_pred ee-------CCCccCCCCCCHhhHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCC--CceEEEEecChhhhhcH
Q 010211 254 NV-------RGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNA--DIHVIVKIESADSIPNL 324 (515)
Q Consensus 254 nl-------pg~~~~lp~ltekD~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~--~i~IIaKIEt~~aveNl 324 (515)
|+ ||+.+++|.||+||++||+||+++|+|||++||||+++||.++|++|.+.|. +++||||||+++|++||
T Consensus 183 Nl~~~g~~~p~~~~~lp~ltekD~~di~f~~~~~vD~ia~SFVr~a~Dv~~~r~~l~~~g~~~~~~IiAKIE~~~av~nl 262 (509)
T PLN02762 183 TFWRDGSLVRERNAMLPTISSKDWLDIDFGISEGVDFIAVSFVKSAEVIKHLKSYIAARSRDSDIGVIAKIESLDSLKNL 262 (509)
T ss_pred eeccccCCCCCCccCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCCCCceEEEEeCCHHHHHHH
Confidence 99 9999999999999999999999999999999999999999999999998765 79999999999999999
Q ss_pred HHHHhhcCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEe
Q 010211 325 HSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVM 404 (515)
Q Consensus 325 deIl~~sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vm 404 (515)
|||++++|||||||||||+|+|+++||.+||+||++|+++|||||+||||||||+++|+|||||++||||||+||+||+|
T Consensus 263 ~eIi~~sDgiMVARGDLGvEip~e~vp~~QK~II~~c~~~gKPVIvATQmLeSMi~np~PTRAEvsDVaNAVlDGtDavM 342 (509)
T PLN02762 263 EEIIRASDGAMVARGDLGAQIPLEQVPSVQEKIVRLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALM 342 (509)
T ss_pred HHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCEEEECchHHhhhhCCCCCchhHHHHHHHHHhCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccCCCCHHHHHHHHHHHHHHHhcCCC----CC-----CCC----CCHHHHHHHHhH---------HhhccCCChHH
Q 010211 405 LSGETAHGKFPLKAVKVMHTVALRTESSLP----VS-----ITP----PTQFSAHKNRIH---------GSNFKSLSAFI 462 (515)
Q Consensus 405 Ls~ETa~G~yPveaV~~m~~I~~~aE~~~~----~~-----~~~----~~~~~~ia~~a~---------a~~v~t~sG~t 462 (515)
||+|||+|+||+|||++|++||+++|+... +. ... ....++++.+++ ++.++|.||+|
T Consensus 343 LSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~aia~sa~~~A~~l~a~aIv~~T~sG~t 422 (509)
T PLN02762 343 LSGESAMGLYPEKALSVLRSVSLRMELWSREEKRHEALELPQLSSSLSDRISEEICNSAAKMANNLGVDAIFVYTKHGHM 422 (509)
T ss_pred EcchhcCCCCHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhccccccccchHHHHHHHHHHHHhhcCCCEEEEECCCcHH
Confidence 999999999999999999999999998531 11 100 245677776654 25579999999
Q ss_pred HHHHHhcCCCCeEEEEeCCHHHHHhcccccceEEEEcCC
Q 010211 463 NNLCLHKSLWHEIFVSLAERELSRDWCFIKVSCPYICSF 501 (515)
Q Consensus 463 A~~iS~~RP~~pIiavT~~~~~ar~l~L~~GV~p~~~~~ 501 (515)
|+++|||||.+||||+|++++++|+|+|+|||+|++...
T Consensus 423 A~~iSk~RP~~pIia~t~~~~~~r~l~l~~GV~p~~~~~ 461 (509)
T PLN02762 423 ASLLSRNRPDCPIFAFTDTTSVRRRLNLQWGLIPFRLDF 461 (509)
T ss_pred HHHHHhhCCCCCEEEECCCHHHHHHhhcccCcEEEEeCC
Confidence 999999999999999999999999999999999998754
No 2
>PLN02623 pyruvate kinase
Probab=100.00 E-value=9.8e-122 Score=992.02 Aligned_cols=452 Identities=71% Similarity=1.016 Sum_probs=427.1
Q ss_pred ccccccceeeeeccCCCCccccchhHhhhhhccCCCCCCCCCCccCCCCCCCCeEEEEecCCCCCCHHHHHHHHHhCCcE
Q 010211 48 QKQRFSIRSMRISHDNHAPKISLFEESLSSIFELPNGQCTPGKGVVGPNARRKTKIVCTIGPSTSSREMIWKLAEEGMNV 127 (515)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~TKIi~TiGPss~~~e~i~~li~aGm~v 127 (515)
+.++.+.+.++++|+|++ .++++++.+...+.+.+..+..+||+.|..+|||||||||||+|+++|+|++|+++||||
T Consensus 61 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rkTKIV~TiGPas~s~e~l~~li~aGmnv 138 (581)
T PLN02623 61 RSKSQETEVIPVSPEDGG--ANFVEDNEEVLLEIQQLGETAVGMWSKPSVRRKTKIVCTIGPSTNTREMIWKLAEAGMNV 138 (581)
T ss_pred hccccCcceeeccccccc--cccccccccccchhhHHHhhhhhhcCCCCCCCCCeEEEEeCCCcCCHHHHHHHHHcCCCE
Confidence 345566678999999999 778999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEEecCCCeeeeeccCCcEEEecCCEEEEEeecCCCCcceEEecccc
Q 010211 128 ARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQPIILKEGQEFNFTIKRGVSTEDTVSVNYDD 207 (515)
Q Consensus 128 ~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~I~lDL~GPkIRtG~l~~~i~L~~G~~v~lt~~~~~~~~~~i~v~~~~ 207 (515)
||||||||++++|+++|+++|+++++.++++++||+||||||||+|.+++++.|++||+|+|+.+...++++.++++|++
T Consensus 139 ~RlNfSHg~~e~h~~~i~~vr~~~~~~~~~~iaIl~Dl~GPkIRig~~~~~i~l~~G~~v~lt~~~~~g~~~~i~v~y~~ 218 (581)
T PLN02623 139 ARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQPIMLEEGQEFTFTIKRGVSTEDCVSVNYDD 218 (581)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHcCCCceEEEecCCCCceecccCCCCEEecCCCEEEEecCccCCCCCEEeechHH
Confidence 99999999999999999999999999766999999999999999999988999999999999988667788899999999
Q ss_pred cccccCcCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEeccCceeeeCCCccCCCCCCHhhHHHhhcchhcCCcEEEec
Q 010211 208 FVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVS 287 (515)
Q Consensus 208 l~~~v~~Gd~IliDDG~I~l~V~~~~~~~v~~~V~~gG~L~s~KgVnlpg~~~~lp~ltekD~~dI~~al~~gvD~ValS 287 (515)
|++++++||.||+|||+|.|+|++++++.++|+|++||.|+++||||+||+.+++|.||+||++||+|++++|+|||++|
T Consensus 219 l~~~v~~Gd~IlidDG~i~l~V~~~~~~~v~~~V~~gG~L~s~KgvNlpg~~~~lp~lTekD~~di~f~~~~~vD~ialS 298 (581)
T PLN02623 219 FVNDVEVGDMLLVDGGMMSLAVKSKTSDSVKCEVVDGGELKSRRHLNVRGKSATLPSITEKDWEDIKFGVENKVDFYAVS 298 (581)
T ss_pred HHhhCCCCCEEEEeCCeEEEEEEEEECCEEEEEEEeceEecCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHcCCCEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCc
Q 010211 288 FVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKP 367 (515)
Q Consensus 288 fVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKP 367 (515)
||++++||+++++|++++|.++.+|+||||++||+|+|||++.+|||||||||||+++|+++|+.+|++|+++|+++|||
T Consensus 299 FVr~a~DV~~~r~~l~~~~~~~~iiakIEt~eaVeNldeIl~g~DgImIgrgDLgvelg~~~v~~~qk~Ii~~~~~~gKp 378 (581)
T PLN02623 299 FVKDAQVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRRCRSMGKP 378 (581)
T ss_pred CCCCHHHHHHHHHHHHHcCCcceEEEEECCHHHHHhHHHHHHhCCEEEECcchhhhhcCcHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHHHHHHHHhcCCCCCCC--------C
Q 010211 368 VIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSIT--------P 439 (515)
Q Consensus 368 vivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~--------~ 439 (515)
+|+||||||||++++.|||||++|++|++.+|+|++||++||+.|+||+|||++|++||.++|+.+++... .
T Consensus 379 vivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~Eta~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~ 458 (581)
T PLN02623 379 VIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTEATLPEGTTPPNLGQAFK 458 (581)
T ss_pred EEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecchhhcCcCHHHHHHHHHHHHHHHHhhcccchhhhhhccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999986543211 1
Q ss_pred CCHHHHHHHHhH--------HhhccCCChHHHHHHHhcCCCCeEEEEeCCHHHHHhcccccceEEEEcCC
Q 010211 440 PTQFSAHKNRIH--------GSNFKSLSAFINNLCLHKSLWHEIFVSLAERELSRDWCFIKVSCPYICSF 501 (515)
Q Consensus 440 ~~~~~~ia~~a~--------a~~v~t~sG~tA~~iS~~RP~~pIiavT~~~~~ar~l~L~~GV~p~~~~~ 501 (515)
....++++.+++ .+.++|+||+||+++|||||.+||||+|++++++|+|+|+|||+|++++.
T Consensus 459 ~~~~~~ia~sA~~~A~~l~a~Ivv~T~sG~tA~~lSr~RP~~pI~avT~~~~~aR~L~L~~GV~P~~~~~ 528 (581)
T PLN02623 459 NHMSEMFAFHATMMANTLGTSIIVFTRTGFMAILLSHYRPSGTIFAFTNEKRIQQRLALYQGVCPIYMQF 528 (581)
T ss_pred CChHHHHHHHHHHHHHhcCCcEEEECCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccccEEEecCC
Confidence 245667776654 24579999999999999999999999999999999999999999998753
No 3
>PTZ00066 pyruvate kinase; Provisional
Probab=100.00 E-value=6e-122 Score=985.49 Aligned_cols=406 Identities=37% Similarity=0.568 Sum_probs=382.2
Q ss_pred CCCCCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEEecCCCeeeeecc
Q 010211 96 NARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDV 175 (515)
Q Consensus 96 ~~~r~TKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~I~lDL~GPkIRtG~l 175 (515)
.++|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|+++++.++++++||+||||||||+|.+
T Consensus 35 ~~~rktKIi~TiGPas~~~e~l~~mi~aGm~v~RlN~SHg~~e~~~~~i~~vR~~~~~~~~~~iaIl~Dl~GPkiR~g~~ 114 (513)
T PTZ00066 35 LRQKKTHIVCTMGPACKNVETLVKLIDAGMNICRFNFSHGDHESHKKTLNNVREAAKARPNANLGILLDTKGPEIRTGFL 114 (513)
T ss_pred ccCCCCeEEEeeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCceEEEeeCCCCceeeccc
Confidence 35799999999999999999999999999999999999999999999999999999996339999999999999999999
Q ss_pred CC--cEEEecCCEEEEEee-cCCCCcceEEecccccccccCcCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEeccCce
Q 010211 176 PQ--PIILKEGQEFNFTIK-RGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRH 252 (515)
Q Consensus 176 ~~--~i~L~~G~~v~lt~~-~~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~~~~~~v~~~V~~gG~L~s~Kg 252 (515)
++ ++.|++||.|+|+.+ ...++++.++++|++|++++++||+||+|||+|.|+|++++++.++|+|++||.|+++||
T Consensus 115 ~~~~~i~l~~G~~~~l~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~~~~~~v~~~v~~gG~l~~~Kg 194 (513)
T PTZ00066 115 KNHKPITLKEGQTLKITTDYTFLGDETCISCSYKKLPQSVKVGNIILIADGSLSCKVLEVHDDYIITKVLNNATIGERKN 194 (513)
T ss_pred CCCCeEEeCCCCEEEEecCCccCCCCcEEecchHHHHhhccCCCEEEEeCCEEEEEEEEEECCEEEEEEEeCcEEcCCcc
Confidence 75 699999999999987 345677899999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCCccCCCCCCHhhHHHh-hcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhc
Q 010211 253 LNVRGKSANLPSITDKDWEDI-KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISAS 331 (515)
Q Consensus 253 Vnlpg~~~~lp~ltekD~~dI-~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~s 331 (515)
||+||+.+++|.||+||++|| +|++++|+|||++||||+++||.++|+++++.+.+++|||||||++|++|||||++++
T Consensus 195 vnlpg~~~~lp~ltekD~~dI~~f~~~~~vD~IalSFVr~a~DI~~~r~~l~~~g~~~~IiAKIE~~~av~NldeIl~~s 274 (513)
T PTZ00066 195 MNLPGVKVELPVIGEKDKNDILNFAIPMGCDFIALSFVQSADDVRLCRQLLGERGRHIKIIPKIENIEGLINFDEILAES 274 (513)
T ss_pred cccCCCccCCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHHHhc
Confidence 999999999999999999998 8999999999999999999999999999999888999999999999999999999999
Q ss_pred CeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccC
Q 010211 332 DGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAH 411 (515)
Q Consensus 332 DgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~ 411 (515)
|||||||||||+|+|+|+||.+||+||++|+++|||||+||||||||+++|.|||||++||||||.||+||+|||+|||+
T Consensus 275 DGIMVARGDLGvEip~e~vp~~QK~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVaNAV~DG~DavMLSgETA~ 354 (513)
T PTZ00066 275 DGIMVARGDLGMEIPPEKVFLAQKMMISKCNVAGKPVITATQMLESMIKNPRPTRAESTDVANAVLDGTDCVMLSGETAN 354 (513)
T ss_pred CEEEEEccccccccChHHcchHHHHHHHHHHHhCCCEEEechhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEecchhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCCC----------CCCHHHHHHHHhH---------HhhccCCChHHHHHHHhcCCC
Q 010211 412 GKFPLKAVKVMHTVALRTESSLPVSIT----------PPTQFSAHKNRIH---------GSNFKSLSAFINNLCLHKSLW 472 (515)
Q Consensus 412 G~yPveaV~~m~~I~~~aE~~~~~~~~----------~~~~~~~ia~~a~---------a~~v~t~sG~tA~~iS~~RP~ 472 (515)
|+||+|||++|++|++++|+.+++... +....++++.+|+ ++.++|.||+||+++|||||.
T Consensus 355 G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~aa~~~A~~l~a~aIv~~T~SG~TAr~iSk~RP~ 434 (513)
T PTZ00066 355 GKFPVEAVNIMAKICFEAETCIDYRVLYHAIHLAVPTPVSVQEAVARSAVETAEDINAKLIIALTETGNTARLISKYRPS 434 (513)
T ss_pred CcCHHHHHHHHHHHHHHHhhccchHHhhhhhhccccCCCchhhHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhCCC
Confidence 999999999999999999986544211 1133567776654 245799999999999999999
Q ss_pred CeEEEEeCCHHHHHhcccccceEEEEcCC
Q 010211 473 HEIFVSLAERELSRDWCFIKVSCPYICSF 501 (515)
Q Consensus 473 ~pIiavT~~~~~ar~l~L~~GV~p~~~~~ 501 (515)
+||||+|++++++|+|+|+|||+|+++..
T Consensus 435 ~pIia~t~~~~~~R~L~L~wGV~p~~~~~ 463 (513)
T PTZ00066 435 CTILALSASPSVVKSLSVARGVTTYVVNS 463 (513)
T ss_pred CCEEEECCCHHHHHHhhcccCcEEEEecC
Confidence 99999999999999999999999998754
No 4
>PRK09206 pyruvate kinase; Provisional
Probab=100.00 E-value=3.1e-121 Score=975.07 Aligned_cols=403 Identities=39% Similarity=0.602 Sum_probs=381.6
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEEecCCCeeeeeccCC
Q 010211 98 RRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQ 177 (515)
Q Consensus 98 ~r~TKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~I~lDL~GPkIRtG~l~~ 177 (515)
+|||||||||||+|+++|+|++|+++|||+||||||||++++|+++|+++|++++++| ++++|++||||||||+|.+++
T Consensus 1 mr~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~sHg~~~~~~~~i~~vr~~~~~~~-~~i~Il~Dl~GPkiR~g~~~~ 79 (470)
T PRK09206 1 MKKTKIVCTIGPKTESEEMLTKLLDAGMNVMRLNFSHGDYAEHGQRIKNLRNVMSKTG-KKAAILLDTKGPEIRTMKLEG 79 (470)
T ss_pred CCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEeeCCCCceeccccCC
Confidence 5899999999999999999999999999999999999999999999999999999998 999999999999999999965
Q ss_pred --cEEEecCCEEEEEeec-CCCCcceEEecccccccccCcCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEeccCceee
Q 010211 178 --PIILKEGQEFNFTIKR-GVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLN 254 (515)
Q Consensus 178 --~i~L~~G~~v~lt~~~-~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~~~~~~v~~~V~~gG~L~s~KgVn 254 (515)
++.|++||.++|+.+. ..++++.++++|++|++.+++||.||+|||+|.|+|++++++.++|+|++||.|+++||||
T Consensus 80 ~~~i~l~~G~~~~l~~~~~~~~~~~~i~~~~~~~~~~v~~G~~i~idDG~i~l~V~~~~~~~v~~~v~~~G~l~s~Kgvn 159 (470)
T PRK09206 80 GNDVSLKAGQTFTFTTDKSVVGNKERVAVTYEGFTADLSVGNTVLVDDGLIGMEVTAITGNEVICKVLNNGDLGENKGVN 159 (470)
T ss_pred CCeeeecCCCEEEEEecCccCCCCCEEEechHHHHhhcCCCCEEEEeCCEEEEEEEEEeCCEEEEEEEECCEecCCCcee
Confidence 5999999999999774 3466789999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCccCCCCCCHhhHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcC-CCceEEEEecChhhhhcHHHHHhhcCe
Q 010211 255 VRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCN-ADIHVIVKIESADSIPNLHSIISASDG 333 (515)
Q Consensus 255 lpg~~~~lp~ltekD~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~-~~i~IIaKIEt~~aveNldeIl~~sDg 333 (515)
+||+.+++|.||+||++||+|++++|+|||++||||+++||.++++|+.+.| +++.||+||||++|++|||||++++||
T Consensus 160 ~p~~~~~lp~ltekD~~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeIl~~~Dg 239 (470)
T PRK09206 160 LPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVLEIREHLKAHGGENIQIISKIENQEGLNNFDEILEASDG 239 (470)
T ss_pred ccCcccCCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHcCCCCceEEEEECCHHHHHhHHHHHHhCCE
Confidence 9999999999999999999999999999999999999999999999999987 589999999999999999999999999
Q ss_pred eEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCC
Q 010211 334 AMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGK 413 (515)
Q Consensus 334 ImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~ 413 (515)
|||||||||+++|+++|+.+||+|+++|+++|||||+||||||||+++|.|||||++|+||||.||+||+|||+|||+|+
T Consensus 240 ImVaRGDLgvelg~e~vp~~qk~ii~~~~~~gkpvI~ATqmLeSM~~np~PTRAEvsDVanav~dG~DavMLS~ETA~G~ 319 (470)
T PRK09206 240 IMVARGDLGVEIPVEEVIFAQKMMIEKCNRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGK 319 (470)
T ss_pred EEECcchhhhhcCHHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEEechhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCC------CCCCCHHHHHHHHhH---------HhhccCCChHHHHHHHhcCCCCeEEEE
Q 010211 414 FPLKAVKVMHTVALRTESSLPVS------ITPPTQFSAHKNRIH---------GSNFKSLSAFINNLCLHKSLWHEIFVS 478 (515)
Q Consensus 414 yPveaV~~m~~I~~~aE~~~~~~------~~~~~~~~~ia~~a~---------a~~v~t~sG~tA~~iS~~RP~~pIiav 478 (515)
||+|||++|++||+++|+.+.+. ....+..++++.+++ ++.++|.||+||+++|||||.+||||+
T Consensus 320 yPveaV~~m~~I~~~~E~~~~~~~~~~~~~~~~~~~~~ia~sa~~~A~~l~a~aIv~~T~sG~tA~~is~~RP~~pIia~ 399 (470)
T PRK09206 320 YPLEAVSIMATICERTDRVMNSRLESNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARSVRKYFPDATILAL 399 (470)
T ss_pred CHHHHHHHHHHHHHHHHhhcchhhhhhccccCCChHHHHHHHHHHHHhcCCCCEEEEECCCcHHHHHHHhhCCCCCEEEE
Confidence 99999999999999999864331 111245677877665 245799999999999999999999999
Q ss_pred eCCHHHHHhcccccceEEEEcCC
Q 010211 479 LAERELSRDWCFIKVSCPYICSF 501 (515)
Q Consensus 479 T~~~~~ar~l~L~~GV~p~~~~~ 501 (515)
|++++++|+|+|+|||+|++++.
T Consensus 400 t~~~~~~r~l~l~~GV~p~~~~~ 422 (470)
T PRK09206 400 TTNEKTARQLVLSKGVVPQLVKE 422 (470)
T ss_pred CCCHHHHHHhhcccCcEEEEeCC
Confidence 99999999999999999998864
No 5
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.6e-121 Score=967.17 Aligned_cols=404 Identities=43% Similarity=0.653 Sum_probs=383.2
Q ss_pred CCCCCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEEecCCCeeeeecc
Q 010211 96 NARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDV 175 (515)
Q Consensus 96 ~~~r~TKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~I~lDL~GPkIRtG~l 175 (515)
.++|||||||||||+++++|+|++|+++||||||||||||++++|+++++++|+++++++ +|++||+||||||||+|.+
T Consensus 2 ~~~~kTKIVaTiGPas~s~e~l~~li~aG~nV~RlNfSHG~~e~h~~~i~~vR~~~~~~~-~~vaIl~DlkGPkIR~g~~ 80 (477)
T COG0469 2 RMMRKTKIVATLGPATESEEMLEKLIEAGMNVVRLNFSHGDHEEHKKRIDNVREAAEKLG-RPVAILLDLKGPKIRTGKF 80 (477)
T ss_pred CCCccceEEEEECCCCCCHHHHHHHHHccCcEEEEecCCCChHHHHHHHHHHHHHHHHhC-CceEEEEcCCCCcceeEec
Confidence 368999999999999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred CC-cEEEecCCEEEEEeecC--CCCcceEEecccccccccCcCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEeccCce
Q 010211 176 PQ-PIILKEGQEFNFTIKRG--VSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRH 252 (515)
Q Consensus 176 ~~-~i~L~~G~~v~lt~~~~--~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~~~~~~v~~~V~~gG~L~s~Kg 252 (515)
.+ .+.|++||+|+|+.+.. .++++.++++|++|+++|++||+||+|||+|.|+|.+++++.+.|+|++||.|++|||
T Consensus 81 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~v~v~y~~l~~dV~~G~~iLlDDG~i~l~V~~v~~~~v~~~v~n~G~l~~~Kg 160 (477)
T COG0469 81 KGGAVELEKGEKFTLTTDDKVGEGDEERVSVDYKDLAKDVKPGDRILLDDGKIELRVVEVDGDAVITRVLNGGVLSSNKG 160 (477)
T ss_pred CCCcEEeecCCEEEEeccccccCCCCcEEeccHHHHHhhcCCCCEEEEeCCeeEEEEEEeeCCEEEEEEEeCCCccCCCc
Confidence 65 69999999999998865 3456799999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCCccCCCCCCHhhHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCC-ceEEEEecChhhhhcHHHHHhhc
Q 010211 253 LNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNAD-IHVIVKIESADSIPNLHSIISAS 331 (515)
Q Consensus 253 Vnlpg~~~~lp~ltekD~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~-i~IIaKIEt~~aveNldeIl~~s 331 (515)
||+||..+.+|+||+||++||+|++++|+|||++|||++++|+.++|+++.+.+.. ++||||||+++||+|||||++++
T Consensus 161 vN~pg~~l~~palteKD~~dl~f~~~~gvD~vA~SFVr~~~Dv~~~R~~l~~~~~~~~~iiaKIE~~eav~NldeIi~~S 240 (477)
T COG0469 161 VNLPGVDLSLPALTEKDKEDLKFGLEQGVDFVALSFVRNAEDVEEVREILAETGGRDVKIIAKIENQEAVDNLDEIIEAS 240 (477)
T ss_pred eecCCCCCCCCCCCccCHHHHHHHHhcCCCEEEEecCCCHHHHHHHHHHHHHhCCCCceEEEeecCHHHHhHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999877665 99999999999999999999999
Q ss_pred CeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccC
Q 010211 332 DGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAH 411 (515)
Q Consensus 332 DgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~ 411 (515)
|||||||||||+|+|+++||.+||+||++|+++|||||+||||||||+.+|.|||||++||||||.||+|++|||+|||.
T Consensus 241 DGIMVARGDLGVEip~e~Vp~~QK~iI~~~~~~gkpVItATQMLeSMi~np~PTRAEvsDVanAvlDGtDAvMLS~ETA~ 320 (477)
T COG0469 241 DGIMVARGDLGVEIPLEEVPIIQKRIIRKARRAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAA 320 (477)
T ss_pred CceEEEecccccccCHHHhhHHHHHHHHHHHHcCCceEEeeccHHHHhhCCCCCchhhhHHHHHHHhCCceeeechhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCCC--------CCCHHHHHHHHhH---------HhhccCCChHHHHHHHhcCCCCe
Q 010211 412 GKFPLKAVKVMHTVALRTESSLPVSIT--------PPTQFSAHKNRIH---------GSNFKSLSAFINNLCLHKSLWHE 474 (515)
Q Consensus 412 G~yPveaV~~m~~I~~~aE~~~~~~~~--------~~~~~~~ia~~a~---------a~~v~t~sG~tA~~iS~~RP~~p 474 (515)
|+||+|||++|++||.++|+.+++... ..+..++++.++. ++.++|.||+||+++|||||.+|
T Consensus 321 G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~e~ia~aa~~~a~~l~~k~iv~~T~sG~ta~~isk~Rp~~p 400 (477)
T COG0469 321 GKYPVEAVATMARIAKEAEKELPDNQLLRFRVDPPDSSITEAIALAAVDIAEKLDAKAIVTLTESGRTARLLSKYRPEAP 400 (477)
T ss_pred CCCHHHHHHHHHHHHHHHhcccchhhhhhhccccccccHHHHHHHHHHHHHHhcCCcEEEEEcCCCHHHHHHhcCCCCCc
Confidence 999999999999999999998762211 1256778877654 24478999999999999999999
Q ss_pred EEEEeCCHHHHHhcccccceEEEEcC
Q 010211 475 IFVSLAERELSRDWCFIKVSCPYICS 500 (515)
Q Consensus 475 IiavT~~~~~ar~l~L~~GV~p~~~~ 500 (515)
|||+|++++++|+|+|+|||+|+++.
T Consensus 401 Iia~t~~~~v~r~l~l~~GV~p~~~~ 426 (477)
T COG0469 401 IIALTPNERVARRLALVWGVYPLLVE 426 (477)
T ss_pred EEEECCCHHHHhhhceeecceeEEec
Confidence 99999999999999999999999997
No 6
>PLN02461 Probable pyruvate kinase
Probab=100.00 E-value=4.8e-120 Score=971.41 Aligned_cols=405 Identities=37% Similarity=0.560 Sum_probs=380.8
Q ss_pred CCCCCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEEecCCCeeeeecc
Q 010211 96 NARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDV 175 (515)
Q Consensus 96 ~~~r~TKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~I~lDL~GPkIRtG~l 175 (515)
.++|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|+++++.| ++++||+||||||||+|.+
T Consensus 18 ~~~r~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~SHg~~e~h~~~i~~vr~~~~~~g-~~i~Il~Dl~GPkIR~g~~ 96 (511)
T PLN02461 18 LRRPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGSHEYHQETLDNLRQAMANTG-ILCAVMLDTKGPEIRTGFL 96 (511)
T ss_pred ccCCCCeEEEEeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcC-CCeEEEeeCCCCceecccc
Confidence 458999999999999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred CC--cEEEecCCEEEEEeec-CCCCcceEEecccccccccCcCCEEEEeCCeeEEEEEEEe--CCeEEEEEeeCcEeccC
Q 010211 176 PQ--PIILKEGQEFNFTIKR-GVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKT--KDLVKCIVVDGGELKSR 250 (515)
Q Consensus 176 ~~--~i~L~~G~~v~lt~~~-~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~~~--~~~v~~~V~~gG~L~s~ 250 (515)
++ ++.|++||.++|+.+. ..++++.|+++|++|++.+++||+||+|||+|.|+|++++ ++.++|+|.+||.|+++
T Consensus 97 ~~~~~i~l~~G~~v~lt~~~~~~~~~~~i~v~~~~~~~~v~~Gd~IlidDG~i~l~V~~~~~~~~~i~~~v~~gG~l~s~ 176 (511)
T PLN02461 97 KDGKPVQLKQGQEITITTDYSIKGDENMIAMSYKKLAVDVKPGSVILCADGTITLTVLSCDVEAGTVRCRCENSAMLGER 176 (511)
T ss_pred CCCCceecCCCCEEEEecCCccCCCCCEEEeccHHHHhhcCCCCEEEEeCCEEEEEEEEEecCCCEEEEEEecCcEecCC
Confidence 64 5999999999999873 3467789999999999999999999999999999999987 68999999999999999
Q ss_pred ceeeeCCCccCCCCCCHhhHHHh-hcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHh
Q 010211 251 RHLNVRGKSANLPSITDKDWEDI-KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIIS 329 (515)
Q Consensus 251 KgVnlpg~~~~lp~ltekD~~dI-~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~ 329 (515)
||||+||+.+++|.||+||++|| +||+++|+|||++||||+++||.++|+++.+.+.++.|||||||++|++||+||++
T Consensus 177 Kgvnlpg~~~~lp~ltekD~~di~~f~~~~~vD~ia~SFVr~a~DV~~~r~~l~~~~~~~~IiAKIE~~~av~nl~eIi~ 256 (511)
T PLN02461 177 KNVNLPGVVVDLPTLTEKDKEDILQWGVPNKIDFIALSFVRKGSDLVEVRKVLGEHAKSILLISKVENQEGLDNFDDILA 256 (511)
T ss_pred ceeeecccccCCCCCCHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHHhCCCCCCEEEEECCHHHHHHHHHHHH
Confidence 99999999999999999999998 79999999999999999999999999999988889999999999999999999999
Q ss_pred hcCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccc
Q 010211 330 ASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGET 409 (515)
Q Consensus 330 ~sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ET 409 (515)
++|||||||||||+|+|+++||.+||+||++|+++|||||+||||||||+++|.|||||++||||||.||+||+|||+||
T Consensus 257 ~sDgIMVARGDLGvEip~e~vp~~Qk~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVanAV~dG~D~vMLS~ET 336 (511)
T PLN02461 257 ESDAFMVARGDLGMEIPIEKIFLAQKMMIYKCNLAGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGET 336 (511)
T ss_pred hcCEEEEeccccccccCHHHhHHHHHHHHHHHHHcCCCeEEeehhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEEechh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHhcCCCCCCC----------CCCHHHHHHHHhH---------HhhccCCChHHHHHHHhcC
Q 010211 410 AHGKFPLKAVKVMHTVALRTESSLPVSIT----------PPTQFSAHKNRIH---------GSNFKSLSAFINNLCLHKS 470 (515)
Q Consensus 410 a~G~yPveaV~~m~~I~~~aE~~~~~~~~----------~~~~~~~ia~~a~---------a~~v~t~sG~tA~~iS~~R 470 (515)
|+|+||+|||++|++||+++|+.+++... +.+..++++.+|+ ++.++|.||+||+++||||
T Consensus 337 A~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~a~aIiv~T~sG~tA~~iSk~R 416 (511)
T PLN02461 337 AAGAYPELAVKTMARICREAEASLDYGALFKEIMRSAPLPMSPLESLASSAVRTANKVKASLIVVLTRGGTTARLVAKYR 416 (511)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhccchhhhhhhhcccccccCChHHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhC
Confidence 99999999999999999999986544211 1134567776654 2457999999999999999
Q ss_pred CCCeEEEEeCC-------------HHHHHhcccccceEEEEcCC
Q 010211 471 LWHEIFVSLAE-------------RELSRDWCFIKVSCPYICSF 501 (515)
Q Consensus 471 P~~pIiavT~~-------------~~~ar~l~L~~GV~p~~~~~ 501 (515)
|.|||||+|++ ++++|+|+|+|||+|++++.
T Consensus 417 P~~pIia~t~~~~~~~~~~w~~~~~~~ar~l~L~~GV~P~~~~~ 460 (511)
T PLN02461 417 PAVPILSVVVPEITTDSFDWSCSDEAPARHSLIYRGLIPVLAEG 460 (511)
T ss_pred CCCCEEEEecCcccccccccccCCHHHhhhhheecceEEEEecc
Confidence 99999999966 99999999999999998764
No 7
>PRK06247 pyruvate kinase; Provisional
Probab=100.00 E-value=6.7e-120 Score=964.40 Aligned_cols=401 Identities=37% Similarity=0.559 Sum_probs=379.9
Q ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEEecCCCeeeeeccC
Q 010211 97 ARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVP 176 (515)
Q Consensus 97 ~~r~TKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~I~lDL~GPkIRtG~l~ 176 (515)
++|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|+++++++ ++++|++||||||||+|.++
T Consensus 3 ~~r~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~SHg~~e~~~~~i~~vr~~~~~~~-~~i~Il~Dl~GpkiR~g~~~ 81 (476)
T PRK06247 3 RNRRVKILATLGPASSSEDMIRKLVEAGADVFRLNFSHGDHDDHRELYKRIREVEDETG-RPIGILADLQGPKLRLGRFA 81 (476)
T ss_pred CCCCceEEEEECCCcCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcC-CCeeEEEeCCCCceeccccC
Confidence 47899999999999999999999999999999999999999999999999999999998 99999999999999999996
Q ss_pred C-cEEEecCCEEEEEeecCCCCcceEEecccccccccCcCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEeccCceeee
Q 010211 177 Q-PIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNV 255 (515)
Q Consensus 177 ~-~i~L~~G~~v~lt~~~~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~~~~~~v~~~V~~gG~L~s~KgVnl 255 (515)
+ ++.|++||+|+|+.+...++++.|+++|++|++++++||+||+|||+|.|+|++++++.++|+|++||.|+++||||+
T Consensus 82 ~~~i~l~~G~~~~l~~~~~~~~~~~i~v~~~~l~~~v~~G~~I~idDG~i~l~V~~~~~~~i~~~v~~~G~l~~~Kgvn~ 161 (476)
T PRK06247 82 DGKVQLANGQTFRLDVDDAPGDHDRVSLPHPEIAAALKPGDRLLVDDGKVRLVVEACDGDDVVCRVVEGGPVSDRKGVSL 161 (476)
T ss_pred CCcEeccCCCEEEEEecccCCCCCEeecChhHhHhhcCCCCEEEEeCCeEEEEEEEEECCEEEEEEEeCcEEcCCCcccc
Confidence 5 799999999999988656778899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCCCHhhHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeE
Q 010211 256 RGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAM 335 (515)
Q Consensus 256 pg~~~~lp~ltekD~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgIm 335 (515)
||+.+++|.||+||++||+|++++|+|||++|||++++|+.++|++++ +++.||+||||++|++|||||++++||||
T Consensus 162 p~~~~~~p~ltekD~~di~f~~~~~vD~ia~SFVr~a~Di~~~r~~l~---~~~~iiaKIEt~eav~nldeI~~~~DgIm 238 (476)
T PRK06247 162 PGTVLSVSALTEKDRADLEFALELGVDWVALSFVQRPEDVEEVRKIIG---GRVPVMAKIEKPQAIDRLEAIVEASDAIM 238 (476)
T ss_pred CCcccCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhh---hcCeEEEEECCHHHHHhHHHHHHHcCEEE
Confidence 999999999999999999999999999999999999999999999994 47999999999999999999999999999
Q ss_pred EcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCH
Q 010211 336 VARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFP 415 (515)
Q Consensus 336 IgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yP 415 (515)
|||||||+++|+++|+.+||+|+++|+++|||+|+||||||||+++|.|||||++|+||||.||+|++|||+|||+|+||
T Consensus 239 VaRGDLgve~g~~~v~~~qk~ii~~~~~~gkpvI~ATQmLeSM~~np~PTRAEvtDVaNAV~dG~DavMLS~ETA~G~yP 318 (476)
T PRK06247 239 VARGDLGVEVPLEQVPLIQKRIIRAARRAGKPVVVATQMLESMIENPVPTRAEVSDVATAVLDGADAVMLSAETASGKYP 318 (476)
T ss_pred EccchhccccCHHHHHHHHHHHHHHHHHhCCCEEEECchHHHhhcCCCCCcchhHHHHHHHHhCCcEEEEcchhcCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCC-----CC---CCHHHHHHHHhH---------HhhccCCChHHHHHHHhcCCCCeEEEE
Q 010211 416 LKAVKVMHTVALRTESSLPVSI-----TP---PTQFSAHKNRIH---------GSNFKSLSAFINNLCLHKSLWHEIFVS 478 (515)
Q Consensus 416 veaV~~m~~I~~~aE~~~~~~~-----~~---~~~~~~ia~~a~---------a~~v~t~sG~tA~~iS~~RP~~pIiav 478 (515)
+|||++|++||+++|+.+++.. .+ ....++++.+++ ++.++|.||+||+++|||||.|||||+
T Consensus 319 veaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~sa~~~A~~l~a~~Iv~~T~sG~ta~~isk~RP~~pI~a~ 398 (476)
T PRK06247 319 VEAVRTMARIIRQVERDPTYPPLIHAQRPQPEATKRDAISYAARDIAERLDLAALVAYTSSGDTALRAARERPPLPILAL 398 (476)
T ss_pred HHHHHHHHHHHHHHhhccchhhhhhhcccccCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCcHHHHHHHhhCCCCCEEEE
Confidence 9999999999999998654421 11 244567776654 245799999999999999999999999
Q ss_pred eCCHHHHHhcccccceEEEEcCC
Q 010211 479 LAERELSRDWCFIKVSCPYICSF 501 (515)
Q Consensus 479 T~~~~~ar~l~L~~GV~p~~~~~ 501 (515)
|++++++|+|+|+|||+|++++.
T Consensus 399 t~~~~~~r~l~l~~GV~p~~~~~ 421 (476)
T PRK06247 399 TPNPETARRLALTWGVHCVVVDD 421 (476)
T ss_pred CCCHHHHHHhhcccCCeeEecCC
Confidence 99999999999999999998864
No 8
>PRK06354 pyruvate kinase; Provisional
Probab=100.00 E-value=7.9e-119 Score=979.77 Aligned_cols=406 Identities=38% Similarity=0.608 Sum_probs=383.7
Q ss_pred CCCCCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEEecCCCeeeeecc
Q 010211 96 NARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDV 175 (515)
Q Consensus 96 ~~~r~TKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~I~lDL~GPkIRtG~l 175 (515)
..+|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|+++++++ +|++||+||||||||+|.+
T Consensus 5 ~~~r~tKIi~TiGPas~~~e~l~~li~aG~~v~RlN~sHg~~e~~~~~i~~ir~~~~~~~-~~i~i~~Dl~GpkiR~g~~ 83 (590)
T PRK06354 5 DLMRRTKIVATIGPASESPEKLRQLIEAGATTARLNFSHGDHEEHGARIKNIREASKKLG-KTVGILQDLQGPKIRLGRF 83 (590)
T ss_pred CCCCCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhC-CCEEEEeeCCCCceecccc
Confidence 458999999999999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred CC-cEEEecCCEEEEEeecCCCCcceEEecccccccccCcCCEEEEeCCeeEEEEEEEe--CCeEEEEEeeCcEeccCce
Q 010211 176 PQ-PIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKT--KDLVKCIVVDGGELKSRRH 252 (515)
Q Consensus 176 ~~-~i~L~~G~~v~lt~~~~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~~~--~~~v~~~V~~gG~L~s~Kg 252 (515)
++ ++.|++||+|+|+.+...++++.|+++|++|++++++||.||+|||+|.|+|++++ ++.++|+|++||.|+++||
T Consensus 84 ~~~~i~l~~G~~~~l~~~~~~~~~~~i~v~~~~l~~~v~~Gd~i~idDG~i~l~V~~~~~~~~~v~~~v~~~g~l~~~Kg 163 (590)
T PRK06354 84 EDGPIELKTGDEFILTSREVLGTQEKFSVTYDGLADEVPVGSRILLDDGLIELEVEEVDKADGELHCKVLVGGVLSNKKG 163 (590)
T ss_pred CCCcEEecCCCEEEEEecccCCCCCEEeechHHHHhhcCCCCEEEEeCCeEEEEEEEEEcCCCEEEEEEEeCeEECCCCc
Confidence 65 79999999999998865677889999999999999999999999999999999988 8999999999999999999
Q ss_pred eeeCCCccCCCCCCHhhHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHH-hcCCCceEEEEecChhhhhcHHHHHhhc
Q 010211 253 LNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLK-SCNADIHVIVKIESADSIPNLHSIISAS 331 (515)
Q Consensus 253 Vnlpg~~~~lp~ltekD~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~-~~~~~i~IIaKIEt~~aveNldeIl~~s 331 (515)
||+||+.+++|.||+||++||+|++++++|||++|||++++||.++++|+. ..+.+++||+||||++|++|+|||++++
T Consensus 164 vn~p~~~~~~p~ltekD~~di~f~~~~~vD~ia~SFVr~~~dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeI~~~~ 243 (590)
T PRK06354 164 VNFPGVSLSLPAITEKDREDLIFGLEQGVDWIALSFVRNPSDVLEIRELIEEHNGKHIPIIAKIEKQEAIDNIDAILELC 243 (590)
T ss_pred ccccCCccCCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999994 4588999999999999999999999999
Q ss_pred CeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccC
Q 010211 332 DGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAH 411 (515)
Q Consensus 332 DgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~ 411 (515)
|||||||||||+++|.++|+.+||+|+++|+++|||||+||||||||+++|.|||||++||||||+||+||+|||+|||+
T Consensus 244 DgImVaRGDLgve~g~e~v~~~qk~ii~~~~~~gkpvI~ATqmLeSM~~~p~PTRAEvsDVaNav~DG~DavMLS~ETA~ 323 (590)
T PRK06354 244 DGLMVARGDLGVEIPAEEVPLLQKRLIKKANRLGKPVITATQMLDSMQRNPRPTRAEASDVANAILDGTDAVMLSNETAA 323 (590)
T ss_pred CEEEEccchhhcccCcHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEecccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCCC-------CCCHHHHHHHHhH---------HhhccCCChHHHHHHHhcCCCCeE
Q 010211 412 GKFPLKAVKVMHTVALRTESSLPVSIT-------PPTQFSAHKNRIH---------GSNFKSLSAFINNLCLHKSLWHEI 475 (515)
Q Consensus 412 G~yPveaV~~m~~I~~~aE~~~~~~~~-------~~~~~~~ia~~a~---------a~~v~t~sG~tA~~iS~~RP~~pI 475 (515)
|+||+|||++|++||+++|+.++|... ..+..++++.+++ ++.++|.||+||+++|||||.+||
T Consensus 324 G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~ia~aa~~~a~~~~a~~Iv~~T~sG~ta~~vsk~Rp~~pI 403 (590)
T PRK06354 324 GDYPVEAVQTMATIAVRIEKDLPYRDILSKRPEFTTTITNAISQAVSHIALQLDAAAIVTLTKSGATARNVSKYRPKTPI 403 (590)
T ss_pred CCCHHHHHHHHHHHHHHHHhccchhhhhhhccccCCCHHHHHHHHHHHHHhhcCCCEEEEECCChHHHHHHHhhCCCCCE
Confidence 999999999999999999986554211 1245567776554 255799999999999999999999
Q ss_pred EEEeCCHHHHHhcccccceEEEEcCCc
Q 010211 476 FVSLAERELSRDWCFIKVSCPYICSFQ 502 (515)
Q Consensus 476 iavT~~~~~ar~l~L~~GV~p~~~~~~ 502 (515)
||+|++++++|||+|+|||+|++++..
T Consensus 404 ~a~t~~~~~~r~l~l~~GV~p~~~~~~ 430 (590)
T PRK06354 404 LAVTPNESVARRLQLVWGVTPLLVLDA 430 (590)
T ss_pred EEECCCHHHHHHhhcccCcEEEEeCCC
Confidence 999999999999999999999998643
No 9
>PLN02765 pyruvate kinase
Probab=100.00 E-value=1.8e-118 Score=959.98 Aligned_cols=401 Identities=29% Similarity=0.461 Sum_probs=375.4
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEEecCCCeeeeeccCC-
Q 010211 99 RKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQ- 177 (515)
Q Consensus 99 r~TKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~I~lDL~GPkIRtG~l~~- 177 (515)
|||||||||||+|+++|+|++|+++||||||||||||++++|+++|+++|+++++++ +|++||+||||||||+|.+++
T Consensus 28 ~~tKIVaTiGPas~~~e~l~~li~aGm~v~RlNfSHg~~e~h~~~i~~vR~~~~~~~-~~vaIl~Dl~GPkIR~g~~~~~ 106 (526)
T PLN02765 28 ALTKIVGTLGPKSRSVEVIEACLKAGMSVARFDFSWGDAEYHQETLENLKIAVKNTK-KLCAVMLDTVGPELQVINKTEK 106 (526)
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEecCCCCceeeeecCCC
Confidence 459999999999999999999999999999999999999999999999999999998 999999999999999999964
Q ss_pred cEEEecCCEEEEEeecC-CCCcceEEecccccccccCcCCEEEEeCC--------eeEEEEEEEeCCeEEEEEeeCcEec
Q 010211 178 PIILKEGQEFNFTIKRG-VSTEDTVSVNYDDFVNDVEVGDILLVDGG--------MMSLAVKSKTKDLVKCIVVDGGELK 248 (515)
Q Consensus 178 ~i~L~~G~~v~lt~~~~-~~~~~~i~v~~~~l~~~v~~Gd~IliDDG--------~I~l~V~~~~~~~v~~~V~~gG~L~ 248 (515)
++.|++||+|+|+.+.. .++++.|+++|++|++.+++||+||+||| +|.|+|++++++.++|+|++||.|+
T Consensus 107 ~i~l~~G~~~~l~~~~~~~g~~~~i~v~~~~l~~~v~~Gd~IlidDG~~~g~~dg~i~l~V~~~~~~~v~~~v~~gG~L~ 186 (526)
T PLN02765 107 PISLKAGNTVTLTPDQSKEASSEVLPINFPGLAKAVKPGDTIFVGQYLFTGSETTSVWLEVDEVKGDDVVCTVKNSATLA 186 (526)
T ss_pred cEecCCCCEEEEecccccCCCCCEEeechHHHHhhcCCCCEEEECCcccccccCceEEEEEEEEECCEEEEEEEeCcEEC
Confidence 79999999999998643 56778999999999999999999999988 8999999999999999999999999
Q ss_pred cC-ceeeeCCCccCCCCCCHhhHHHh-hcchhcCCcEEEecccCCHHHHHHHHHHHHhcCC-CceEEEEecChhhhhcHH
Q 010211 249 SR-RHLNVRGKSANLPSITDKDWEDI-KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNA-DIHVIVKIESADSIPNLH 325 (515)
Q Consensus 249 s~-KgVnlpg~~~~lp~ltekD~~dI-~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~-~i~IIaKIEt~~aveNld 325 (515)
++ ||||+||+.+++|.||+||++|| .||+++|+|||++||||+++||.++|+++.+.|. ++.|||||||++|++|||
T Consensus 187 s~~kgvnlpg~~~~lp~ltekD~~di~~f~~~~~vD~ia~SFVr~a~DI~~~r~~l~~~g~~~~~IiaKIE~~~av~nl~ 266 (526)
T PLN02765 187 GSLFTLHVSQVRIDLPTLSEKDKEVISTWGVPNKIDFLSLSYTRHAEDVREAREFLSSLGLSQTQIFAKIENVEGLTHFD 266 (526)
T ss_pred CCccceeCCCCcCCCCCCcHhHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHH
Confidence 94 89999999999999999999999 6999999999999999999999999999998775 899999999999999999
Q ss_pred HHHhhcCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEee
Q 010211 326 SIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 405 (515)
Q Consensus 326 eIl~~sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmL 405 (515)
||++++|||||||||||+|+|+++||.+||+||++|+++|||||+ |||||||+++|.|||||++||||||.||+|++||
T Consensus 267 eIi~~sDgIMVARGDLGvEip~e~vp~~QK~iI~~c~~~gKPVI~-TQmLeSMi~np~PTRAEvsDVaNAV~DGaDavML 345 (526)
T PLN02765 267 EILQEADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGADAILL 345 (526)
T ss_pred HHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCeEE-ehhhhHHhhCCCCChhhHHHHHHHHHhCCCEEEe
Confidence 999999999999999999999999999999999999999999996 9999999999999999999999999999999999
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHhcCCCCC----C-C-----CCCHHHHHHHHhH---------HhhccCCChHHHHHH
Q 010211 406 SGETAHGKFPLKAVKVMHTVALRTESSLPVS----I-T-----PPTQFSAHKNRIH---------GSNFKSLSAFINNLC 466 (515)
Q Consensus 406 s~ETa~G~yPveaV~~m~~I~~~aE~~~~~~----~-~-----~~~~~~~ia~~a~---------a~~v~t~sG~tA~~i 466 (515)
|+|||+|+||+|||++|++||+++|+.+++. . . +....++++.+++ ++.++|.||+||+++
T Consensus 346 SgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~sav~~A~~l~a~aIvv~T~sG~tAr~i 425 (526)
T PLN02765 346 GAETLRGLYPVETISTVGRICAEAEKVFNQDLYFKKTVKYVGEPMSHLESIASSAVRAAIKVKASVIIVFTSSGRAARLI 425 (526)
T ss_pred cchhcCCCCHHHHHHHHHHHHHHHHhhcchhhhhhhhhcccccCCCHHHHHHHHHHHHHhhCCCCEEEEECCCcHHHHHH
Confidence 9999999999999999999999999864431 1 0 1133467776654 245799999999999
Q ss_pred HhcCCCCeEEEEe-CC------------HHHHHhcccccceEEEEcCC
Q 010211 467 LHKSLWHEIFVSL-AE------------RELSRDWCFIKVSCPYICSF 501 (515)
Q Consensus 467 S~~RP~~pIiavT-~~------------~~~ar~l~L~~GV~p~~~~~ 501 (515)
|||||.|||+|+| ++ ++++|||+|+|||+|+++..
T Consensus 426 sk~RP~~pIla~t~~~~~~~~~~~~~~~~~~aR~L~L~~GV~P~~~~~ 473 (526)
T PLN02765 426 AKYRPTMPVLSVVIPRLKTNQLKWSFTGAFQARQCLIVRGLFPMLADP 473 (526)
T ss_pred HhhCCCCCEEEEecCcccccccccccCcHHHHHHhhcccCCEEEEecc
Confidence 9999999999999 77 89999999999999998854
No 10
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=100.00 E-value=2.9e-118 Score=956.46 Aligned_cols=410 Identities=42% Similarity=0.632 Sum_probs=385.5
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEEecCCCeeeeeccCC
Q 010211 98 RRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQ 177 (515)
Q Consensus 98 ~r~TKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~I~lDL~GPkIRtG~l~~ 177 (515)
+|||||||||||+|+++|+|++|+++|||+||||||||++++|+++|+++|+++++++ ++++||+||||||||+|.+++
T Consensus 1 ~~~tkIi~TiGp~s~~~e~l~~li~aG~~v~RiN~sHg~~~~~~~~i~~vr~~~~~~~-~~i~il~Dl~GpkiR~g~~~~ 79 (480)
T cd00288 1 LRRTKIVCTIGPATDSVENLKKLIKAGMNVARMNFSHGSHEYHQSRIDNVREAAEKTG-GPVAIALDTKGPEIRTGLFKG 79 (480)
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEEecCCCceeecccCC
Confidence 5899999999999999999999999999999999999999999999999999999999 999999999999999999975
Q ss_pred --cEEEecCCEEEEEeec--CCCCcceEEecccccccccCcCCEEEEeCCeeEEEEEEEeCC-eEEEEEeeCcEeccCce
Q 010211 178 --PIILKEGQEFNFTIKR--GVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKD-LVKCIVVDGGELKSRRH 252 (515)
Q Consensus 178 --~i~L~~G~~v~lt~~~--~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~~~~~-~v~~~V~~gG~L~s~Kg 252 (515)
++.|++||+|+|+.+. ..++.+.|+++|++|++.+++||.||+|||+|.|+|++++++ .++|+|++||.|+++||
T Consensus 80 ~~~i~l~~G~~~~lt~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~i~idDG~i~l~V~~~~~~~~i~~~v~~~G~l~~~kg 159 (480)
T cd00288 80 GKDISLKAGDKFLVTTDPAAKKGTKEKIYVDYKNLTKDVSPGNTILVDDGLLSLKVLSKDDDKTLVCEVLNGGVLGSRKG 159 (480)
T ss_pred CCceecCCCCEEEEEecccccCCCCcEEeechHHhHhhcCCCCEEEEeCCEEEEEEEEEcCCceEEEEEEeCeEEcCCCc
Confidence 6999999999999875 457778999999999999999999999999999999999998 99999999999999999
Q ss_pred eeeCCCccCCCCCCHhhHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcC
Q 010211 253 LNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASD 332 (515)
Q Consensus 253 Vnlpg~~~~lp~ltekD~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sD 332 (515)
||+||+.+++|.||+||++||+|++++|+|||++|||++++|++++|+|+.+.|.++.+|+||||++|++|||||++++|
T Consensus 160 in~p~~~~~~p~ltekD~~di~f~~~~~vD~ia~SFV~~~~di~~~r~~l~~~~~~~~iiakIEt~~av~nldeI~~~~D 239 (480)
T cd00288 160 VNLPGTDVDLPALSEKDKADLRFGVEQGVDMIFASFVRKASDVLEIREVLGEKGKDIKIIAKIENQEGVNNFDEILEASD 239 (480)
T ss_pred eEeeCcccCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCC
Q 010211 333 GAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHG 412 (515)
Q Consensus 333 gImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G 412 (515)
||||||||||+++|.++|+.+|++|+++|+++|||+|+||||||||+++|.|||||++|+||||.||+|++|||+|||+|
T Consensus 240 gImIargDLg~e~g~~~v~~~qk~ii~~~~~~gkpvi~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D~vmLS~ETa~G 319 (480)
T cd00288 240 GIMVARGDLGVEIPAEEVFLAQKMLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKG 319 (480)
T ss_pred EEEECcchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHHHhCCcEEEEechhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCC--------C--CCHHHHHHHHhH---------HhhccCCChHHHHHHHhcCCCC
Q 010211 413 KFPLKAVKVMHTVALRTESSLPVSIT--------P--PTQFSAHKNRIH---------GSNFKSLSAFINNLCLHKSLWH 473 (515)
Q Consensus 413 ~yPveaV~~m~~I~~~aE~~~~~~~~--------~--~~~~~~ia~~a~---------a~~v~t~sG~tA~~iS~~RP~~ 473 (515)
+||+|||++|++||+++|+.+++... + .+..++++.+|+ ++.++|.||+||+++|+|||.+
T Consensus 320 ~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~sAv~~A~~l~akaIVv~T~SG~TA~~lS~~RP~~ 399 (480)
T cd00288 320 KYPVEAVKAMARICLEAEKALSHRVLFNEMRRLTPRPTSTTEAVAMSAVRAAFELGAKAIVVLTTSGRTARLVSKYRPNA 399 (480)
T ss_pred CCHHHHHHHHHHHHHHHHhccchhhhhhhhhcccccCCChHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHhhCCCC
Confidence 99999999999999999986543211 1 124566665544 2457999999999999999999
Q ss_pred eEEEEeCCHHHHHhcccccceEEEEcCCc-cchhhh
Q 010211 474 EIFVSLAERELSRDWCFIKVSCPYICSFQ-MTWRRH 508 (515)
Q Consensus 474 pIiavT~~~~~ar~l~L~~GV~p~~~~~~-~~w~~~ 508 (515)
||||+|++++++|+|+|+|||+|+++... .+|+.+
T Consensus 400 pIiavT~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~ 435 (480)
T cd00288 400 PIIAVTRNEQTARQLHLYRGVYPVLFEEPKPGWQED 435 (480)
T ss_pred CEEEEcCCHHHhhheeeccCcEEEEecccccccCCC
Confidence 99999999999999999999999988643 467665
No 11
>PRK05826 pyruvate kinase; Provisional
Probab=100.00 E-value=3.9e-117 Score=944.58 Aligned_cols=404 Identities=41% Similarity=0.610 Sum_probs=382.5
Q ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEEecCCCeeeeeccC
Q 010211 97 ARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVP 176 (515)
Q Consensus 97 ~~r~TKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~I~lDL~GPkIRtG~l~ 176 (515)
++|||||||||||+|+++|+|++|+++|||+||||||||++++|+++|+++|+++++++ +|++|++||||||||+|.++
T Consensus 2 ~~~~tkIi~TiGp~s~~~e~l~~li~~G~~v~RiN~sHg~~~~~~~~i~~ir~~~~~~~-~~i~I~~Dl~GpkiR~g~~~ 80 (465)
T PRK05826 2 MLRRTKIVATLGPASDSPENLEKLIEAGVNVVRLNFSHGSHEEHGKRAALVREIAAKLG-RPVAILLDLKGPKIRVGKFK 80 (465)
T ss_pred CCCCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCCCceeecccc
Confidence 57899999999999999999999999999999999999999999999999999999998 99999999999999999996
Q ss_pred C-cEEEecCCEEEEEee-cCCCCcceEEecccccccccCcCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEeccCceee
Q 010211 177 Q-PIILKEGQEFNFTIK-RGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLN 254 (515)
Q Consensus 177 ~-~i~L~~G~~v~lt~~-~~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~~~~~~v~~~V~~gG~L~s~KgVn 254 (515)
+ ++.|++||+|+|+.+ ...++++.|++||++|++++++||.||+|||+|.|+|++++++.++|+|++||.|+++||||
T Consensus 81 ~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~ilidDG~i~l~V~~~~~~~v~~~v~~~g~l~s~kgvn 160 (465)
T PRK05826 81 EGKITLKTGDKFTLDTDQKEEGDKERVGVDYKGLPKDVKPGDILLLDDGKLQLKVVEVDGDEVETEVKNGGPLSNNKGIN 160 (465)
T ss_pred CCcEEecCCCEEEEEeccccCCCCCEEEechHHhHhhcCCCCEEEEeCCeEEEEEEEEeCCEEEEEEEeCcEecCCceee
Confidence 5 799999999999987 34577789999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCccCCCCCCHhhHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCC-CceEEEEecChhhhhcHHHHHhhcCe
Q 010211 255 VRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNA-DIHVIVKIESADSIPNLHSIISASDG 333 (515)
Q Consensus 255 lpg~~~~lp~ltekD~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~-~i~IIaKIEt~~aveNldeIl~~sDg 333 (515)
+||+.+++|.||++|.++|+|++++|+|+|++|||++++|++++++|+.++|. ++.||+||||++|++|||||++++||
T Consensus 161 lp~~~~~lp~lte~D~~~i~~ald~g~d~I~~sfV~saedv~~l~~~l~~~~~~~~~iiakIEt~eav~nldeI~~~~Dg 240 (465)
T PRK05826 161 IPGGGLSLPALTEKDKADIKFAAEQGVDYIAVSFVRSAEDVEEARRLLREAGCPHAKIIAKIERAEAVDNIDEIIEASDG 240 (465)
T ss_pred ccCcccCCCCCChhhHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHcCCcCceEEEEEcCHHHHHhHHHHHHHcCE
Confidence 99999999999999999999999999999999999999999999999999998 99999999999999999999999999
Q ss_pred eEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCC
Q 010211 334 AMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGK 413 (515)
Q Consensus 334 ImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~ 413 (515)
|||||||||+++|.++++.+|++|+++|+++|||+|+||||||||+++|.|||||++||||+|.||+||+|||+|||+|+
T Consensus 241 ImIgrgDLg~elg~~~v~~~qk~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~ 320 (465)
T PRK05826 241 IMVARGDLGVEIPDEEVPGLQKKIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGK 320 (465)
T ss_pred EEECcchhhhhcCcHhHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCC----CCC---CCHHHHHHHHhH----------HhhccCCChHHHHHHHhcCCCCeEE
Q 010211 414 FPLKAVKVMHTVALRTESSLPVS----ITP---PTQFSAHKNRIH----------GSNFKSLSAFINNLCLHKSLWHEIF 476 (515)
Q Consensus 414 yPveaV~~m~~I~~~aE~~~~~~----~~~---~~~~~~ia~~a~----------a~~v~t~sG~tA~~iS~~RP~~pIi 476 (515)
||+|||++|++|+.++|+.+++. ... .+..++++.+++ ++.++|.||+||+++|||||.+|||
T Consensus 321 yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~ia~aa~~~a~~l~~a~~Ivv~T~sG~ta~~isk~RP~~pI~ 400 (465)
T PRK05826 321 YPVEAVEAMARICKGAEKEFSINLSKHRLDRQFDRIDEAIAMSAMYAANHLKGVKAIVALTESGRTARLISRFRPGAPIF 400 (465)
T ss_pred CHHHHHHHHHHHHHHHHhccchhhhhhhccccccchHHHHHHHHHHHHHhcCCCCEEEEECCCcHHHHHHHhhCCCCCEE
Confidence 99999999999999999865431 100 244566665443 3457999999999999999999999
Q ss_pred EEeCCHHHHHhcccccceEEEEcCC
Q 010211 477 VSLAERELSRDWCFIKVSCPYICSF 501 (515)
Q Consensus 477 avT~~~~~ar~l~L~~GV~p~~~~~ 501 (515)
|+|++++++|+|+|+|||+|++++.
T Consensus 401 ~~t~~~~~~r~l~l~~GV~p~~~~~ 425 (465)
T PRK05826 401 AVTRDEKTQRRLALYRGVYPVLFDS 425 (465)
T ss_pred EEcCCHHHHHHhhcccCcEEEEeCC
Confidence 9999999999999999999998864
No 12
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=100.00 E-value=9.1e-110 Score=892.26 Aligned_cols=402 Identities=44% Similarity=0.686 Sum_probs=380.2
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEEecCCCeeeeeccCC-
Q 010211 99 RKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQ- 177 (515)
Q Consensus 99 r~TKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~I~lDL~GPkIRtG~l~~- 177 (515)
|||||||||||+|+++|+|++|+++|||+||||||||++++|+++|+++|+++++++ ++++||+||+|||||+|.+++
T Consensus 1 ~~tkii~Tigp~~~~~e~l~~l~~~G~~~~R~N~shg~~~~~~~~i~~ir~~~~~~~-~~~~i~~Dl~GpkiR~g~~~~~ 79 (473)
T TIGR01064 1 RRTKIVCTIGPATNSPEMLKKLLDAGMNVARLNFSHGSHEEHGKRIENVREAAEKLG-RPVAILLDTKGPEIRTGEIKGG 79 (473)
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCCCceeccccCCC
Confidence 689999999999999999999999999999999999999999999999999999998 999999999999999999975
Q ss_pred cEEEecCCEEEEEeec--CCCCcceEEecccccccccCcCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEeccCceeee
Q 010211 178 PIILKEGQEFNFTIKR--GVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNV 255 (515)
Q Consensus 178 ~i~L~~G~~v~lt~~~--~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~~~~~~v~~~V~~gG~L~s~KgVnl 255 (515)
++.|++||.|+|+.+. ..++++.|+++|++|++.+++||.||+|||+|.|+|++++++.++|+|++||.|+++||||+
T Consensus 80 ~~~l~~g~~v~l~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~i~iddG~i~l~V~~~~~~~~~~~v~~~g~l~~~kgvn~ 159 (473)
T TIGR01064 80 PVKLKKGDKVIITTDDIKGEGDEEDVSVDYKGLTKDVSEGDKILVDDGKISLVVVSVEGDKVICEVLNGGTLKSKKGVNL 159 (473)
T ss_pred ceecCCCCEEEEecccccCCCCCCEEEechHHHHHhcCCCCEEEEeCCeEEEEEEEEECCEEEEEEEeCcEEcCCceeec
Confidence 7999999999999774 34677899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCCCHhhHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcC-CCceEEEEecChhhhhcHHHHHhhcCee
Q 010211 256 RGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCN-ADIHVIVKIESADSIPNLHSIISASDGA 334 (515)
Q Consensus 256 pg~~~~lp~ltekD~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~-~~i~IIaKIEt~~aveNldeIl~~sDgI 334 (515)
||+.+++|.||+||.+||+|+++.|+|+|++|||++++|+..+++++.+.+ .++.|++||||++|++|++||++++||+
T Consensus 160 p~~~~~~~~ltekD~~Dl~~~~~~~~d~I~lskV~sa~dv~~l~~~l~~~~~~~~~Iia~IEt~~av~nl~eI~~~~dgi 239 (473)
T TIGR01064 160 PGADVDLPALSEKDKKDLKFGVEQGVDMVAASFVRTAEDVLEVREVLGEKGAKDVKIIAKIENQEGVDNIDEIAEASDGI 239 (473)
T ss_pred CCCccCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHhcCCCCceEEEEECCHHHHHhHHHHHhhCCcE
Confidence 999999999999999999999999999999999999999999999998877 5899999999999999999999999999
Q ss_pred EEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCC
Q 010211 335 MVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKF 414 (515)
Q Consensus 335 mIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~y 414 (515)
|+|||||++++|.++++.+|++|+.+|+++|||+|+||||||||+.+|.|||||++|++|++.+|+|++|||+||+.|+|
T Consensus 240 ~iG~gDL~~~lg~~~l~~~~~~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~y 319 (473)
T TIGR01064 240 MVARGDLGVEIPAEEVPIAQKKMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKY 319 (473)
T ss_pred EEchHHHHhhcCcHHHHHHHHHHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCC----------CCCCHHHHHHHHhH---------HhhccCCChHHHHHHHhcCCCCeE
Q 010211 415 PLKAVKVMHTVALRTESSLPVSI----------TPPTQFSAHKNRIH---------GSNFKSLSAFINNLCLHKSLWHEI 475 (515)
Q Consensus 415 PveaV~~m~~I~~~aE~~~~~~~----------~~~~~~~~ia~~a~---------a~~v~t~sG~tA~~iS~~RP~~pI 475 (515)
|+|||++|++|++++|+...+.. ...+..++++.+++ ++.++|.||+||+++|+|||.+||
T Consensus 320 P~~~v~~m~~I~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~~akaIVv~T~SG~TA~~vSr~rp~~PI 399 (473)
T TIGR01064 320 PVEAVKMMAKIAKEAEKALAYLTNFNDRKNSDPKPSTITEAIALSAVEAAEKLDAKAIVVLTESGRTARLLSKYRPNAPI 399 (473)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCEEEEEcCChHHHHHHHhhCCCCCE
Confidence 99999999999999998654310 01245677776654 255799999999999999999999
Q ss_pred EEEeCCHHHHHhcccccceEEEEcCC
Q 010211 476 FVSLAERELSRDWCFIKVSCPYICSF 501 (515)
Q Consensus 476 iavT~~~~~ar~l~L~~GV~p~~~~~ 501 (515)
||+|++++++|+|+|+|||+|++++.
T Consensus 400 iAvT~~~~v~R~L~L~wGV~Pil~~~ 425 (473)
T TIGR01064 400 IAVTPNERVARQLALYWGVFPFLVDE 425 (473)
T ss_pred EEEcCCHHHHHHhhccCCcEEEEeCC
Confidence 99999999999999999999998864
No 13
>PTZ00300 pyruvate kinase; Provisional
Probab=100.00 E-value=2.1e-109 Score=881.05 Aligned_cols=376 Identities=36% Similarity=0.530 Sum_probs=353.2
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEEecCCCeeeeeccCC-cEEEecCCEEEEEeec---CCCCcce
Q 010211 125 MNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQ-PIILKEGQEFNFTIKR---GVSTEDT 200 (515)
Q Consensus 125 m~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~I~lDL~GPkIRtG~l~~-~i~L~~G~~v~lt~~~---~~~~~~~ 200 (515)
|||||||||||++|+|+++++++|++++++| ++++||+||||||||||.+++ ++.|++||+++|+.+. ..++++.
T Consensus 1 ~~v~RlN~sHg~~e~h~~~i~~vr~~~~~~~-~~i~il~Dl~GPkiR~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~~~ 79 (454)
T PTZ00300 1 MSVARMNFSHGSHEYHQTTINNVRQAAAELG-VNIAIALDTKGPEIRTGLFVGGEAVMERGATCYVTTDPAFADKGTKDK 79 (454)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEEecCCCceeccccCCCcEEecCCCEEEEEeccccccCCCCCE
Confidence 8999999999999999999999999999998 999999999999999999965 6999999999999873 3467789
Q ss_pred EEecccccccccCcCCEEEEeCCeeEEEEEEEeC-CeEEEEEeeCcEeccCceeeeCCCccCCCCCCHhhHHHhhcchhc
Q 010211 201 VSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTK-DLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDN 279 (515)
Q Consensus 201 i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~~~~-~~v~~~V~~gG~L~s~KgVnlpg~~~~lp~ltekD~~dI~~al~~ 279 (515)
|+++|++|++.+++||.||+|||+|.|+|.++++ +.++|+|++||.|+++||||+||+.+++|.+|++|.++|+|++++
T Consensus 80 i~v~~~~l~~~v~~G~~ilidDG~i~l~V~~~~~~~~v~~~v~~gG~l~~~kgvnlp~~~~~l~~ltekD~~dI~~ald~ 159 (454)
T PTZ00300 80 FYIDYQNLSKVVRPGGYIYIDDGILILHVQSHEDEQTLKCTVTNAHTISDRRGVNLPGCDVDLPAVSAKDCADLQFGVEQ 159 (454)
T ss_pred EEecCcccccccCCCCEEEEeCCeEEEEEEEEcCCceEEEEEecCcEecCCCccccCCCccCCCCCChhhHHHHHHHHHC
Confidence 9999999999999999999999999999999986 699999999999999999999999999999999999999999999
Q ss_pred CCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCCCCHHHHHHHHHH
Q 010211 280 QVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIR 359 (515)
Q Consensus 280 gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~e~v~~aqk~Ii~ 359 (515)
|+|+|++|||++++|+++++++++..|.++.||+||||++||+|||||++.+|||||||||||+++|.++|+.+||+|++
T Consensus 160 gvd~I~~SfVrsaeDv~~vr~~l~~~~~~~~IiaKIEt~eav~nldeI~~~~DgImVaRGDLgvei~~e~vp~~Qk~Ii~ 239 (454)
T PTZ00300 160 GVDMIFASFIRSAEQVGEVRKALGAKGGDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKILIS 239 (454)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhCCEEEEecchhhhhcChHHHHHHHHHHHH
Confidence 99999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHHHHHHHHhcCCCCC---
Q 010211 360 RCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVS--- 436 (515)
Q Consensus 360 ~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~--- 436 (515)
+|+++|||||+||||||||+++|.|||||++||||||.||+|++|||+|||+|+||+|||++|++||+++|+.+++.
T Consensus 240 ~~~~~gkpvI~ATQmLeSM~~~p~PTRAEvsDVanAv~dG~DavMLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~ 319 (454)
T PTZ00300 240 KCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQSAVNEYVFF 319 (454)
T ss_pred HHHHcCCCEEEECchHHHHhhCCCCCchhHHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhhhchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999864221
Q ss_pred -CC------CCCHHHHHHHHhH---------HhhccCCChHHHHHHHhcCCCCeEEEEeCCHHHHHhcccccceEEEEcC
Q 010211 437 -IT------PPTQFSAHKNRIH---------GSNFKSLSAFINNLCLHKSLWHEIFVSLAERELSRDWCFIKVSCPYICS 500 (515)
Q Consensus 437 -~~------~~~~~~~ia~~a~---------a~~v~t~sG~tA~~iS~~RP~~pIiavT~~~~~ar~l~L~~GV~p~~~~ 500 (515)
.. +.+..++++.+++ ++.++|.||+||+++|||||.+||||+|++++++|+|+|+|||+|++++
T Consensus 320 ~~~~~~~~~~~~~~~~ia~sa~~~a~~l~a~aIiv~T~sG~tA~~vs~~RP~~pIia~t~~~~~ar~l~l~~GV~p~~~~ 399 (454)
T PTZ00300 320 NSIKKLQPIPMSAEEAVCSSAVNSVYETKAKALVVLSNTGRSARLVAKYRPNCPIVCVTTRLQTCRQLNITQGVESVFFD 399 (454)
T ss_pred hhhhccccCCCChHHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccCcEEEEec
Confidence 10 1133567776654 2457999999999999999999999999999999999999999999875
Q ss_pred C
Q 010211 501 F 501 (515)
Q Consensus 501 ~ 501 (515)
.
T Consensus 400 ~ 400 (454)
T PTZ00300 400 A 400 (454)
T ss_pred c
Confidence 4
No 14
>KOG2323 consensus Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.3e-109 Score=873.72 Aligned_cols=418 Identities=43% Similarity=0.633 Sum_probs=392.6
Q ss_pred CCCCCCCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEEecCCCeeeee
Q 010211 94 GPNARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSG 173 (515)
Q Consensus 94 ~~~~~r~TKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~I~lDL~GPkIRtG 173 (515)
.+...|+|||+||+||++++.|+|++|+++|||++|+|||||++++|+++++|+|++.+.++..|++|++|++||++|||
T Consensus 16 ~~~~~~~t~ivctigP~s~s~e~l~~m~~aGmniarlNfShGs~~~h~~tidn~~~a~~~~~~~~~ai~LDtkGpEirtg 95 (501)
T KOG2323|consen 16 APKKRRKTKIVCTIGPASRSVEMLRKLLKAGMNIARLNFSHGSHEYHQETIDNLRDAISNTGALPCAIMLDTKGPEIRTG 95 (501)
T ss_pred ccccccceeeEeccCCccchHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHHHHHhhcCCcchhhhhccCCCeEeec
Confidence 45568899999999999999999999999999999999999999999999999999999999778999999999999999
Q ss_pred ccCC--cEEEecCCEEEEEeecCCC--CcceEEecccccccccCcCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEecc
Q 010211 174 DVPQ--PIILKEGQEFNFTIKRGVS--TEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKS 249 (515)
Q Consensus 174 ~l~~--~i~L~~G~~v~lt~~~~~~--~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~~~~~~v~~~V~~gG~L~s 249 (515)
.+++ +++|++|++++||.+.... .++.+++||+.+.++|++||.||+|||.+.+.|+++..+.+.|+|+|+|.++|
T Consensus 96 ~~~~~~~i~L~~G~~i~~t~d~~~~~~~~~~~~vdyk~~~~~V~~G~~i~vddgi~s~~V~~~~~~~~~c~v~n~g~l~s 175 (501)
T KOG2323|consen 96 DLKNGKPIKLKEGQEITITTDYSYEAKLSETISVDYKKLAKDVKPGDIIYVDDGLISLIVKSVSKDEVTCRVENGGMLGS 175 (501)
T ss_pred ccCCCCceeecCCCEEEEEcChhhccccceEEEeehHHhhhccccCCEEEECCceeeeEEEEeecCceEEEEecCccccc
Confidence 9976 8999999999999986433 35899999999999999999999999999999999998899999999999999
Q ss_pred Cce-eeeCCCccCCCCCCHhhHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHH
Q 010211 250 RRH-LNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSII 328 (515)
Q Consensus 250 ~Kg-Vnlpg~~~~lp~ltekD~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl 328 (515)
+|| +|+||+..++|.|||||++||+||+++++|+|++||||.++|+.++|++|++.+++++||+|||+++|+.|+|+|+
T Consensus 176 ~k~~vnlpg~~vdlp~ltekd~~dl~fGven~vd~i~~SfIR~a~dv~~iR~~Lg~~g~~ikiisKIEn~~g~~nfDeIl 255 (501)
T KOG2323|consen 176 RKGNVNLPGTHVDLPALTEKDEKDLKFGVENKVDMIFASFIRKASDVREVRKVLGESGKNIKLISKIENQEGVSNFDEIL 255 (501)
T ss_pred ccCcccCCCccccCCccChhhHHHHhcCCCCCCCEEEeeeeeehHHHHHHHHHhCccCCcceEEEEechhhhhccHHHHH
Confidence 999 9999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred hhcCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeeccc
Q 010211 329 SASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGE 408 (515)
Q Consensus 329 ~~sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~E 408 (515)
.++||+||+|||||+|+|.|+++.+||.+|.+|+.+|||||+||||||||+.+|+|||||.+||+|||+||+||+|||+|
T Consensus 256 ~~sDg~MvarGdlGieip~e~vflaQK~~I~kcn~~gKPVI~atqmleSm~~kprPtRaE~SDVanAVLdg~D~vmLsgE 335 (501)
T KOG2323|consen 256 IESDGIMVARGDLGIEIPAEKVFLAQKMMIYKCNSAGKPVICATQMLESMIVKPRPTRAEASDVANAVLDGADCVMLSGE 335 (501)
T ss_pred HhcCceEEEeCCCCcccCHHHHHHHHHHHHHHhcccCCCEEEehhhHHhhccCCCCCccchHHHHHHHhccCceEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhcCCCCCCCC----------CCHHHHHHHHhH---------HhhccCCChHHHHHHHhc
Q 010211 409 TAHGKFPLKAVKVMHTVALRTESSLPVSITP----------PTQFSAHKNRIH---------GSNFKSLSAFINNLCLHK 469 (515)
Q Consensus 409 Ta~G~yPveaV~~m~~I~~~aE~~~~~~~~~----------~~~~~~ia~~a~---------a~~v~t~sG~tA~~iS~~ 469 (515)
||.|+||++||++|+.||.+||+.++|..++ .+..++++.+|+ ++.++|+||++|+++|+|
T Consensus 336 ta~G~yP~~av~~m~~i~~~aE~~~~~~~~~~~l~~~v~~~~~~ie~~a~~Av~~a~~~~a~aIvv~T~sg~~a~lvsky 415 (501)
T KOG2323|consen 336 TAKGKYPVEAVKTMARICKEAEAVIYYDSLFSELGTAVSFPMSTIESLAASAVRAATKCLASAIVVLTKSGYTAILVSKY 415 (501)
T ss_pred hhcCcCcHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHhhcceEEEEEecCcccHHHHhcc
Confidence 9999999999999999999999988774332 233455555443 245899999999999999
Q ss_pred CCCCeEEEEeCCHHHHHhcccccceEEEEcC--Cccchhhhhhh
Q 010211 470 SLWHEIFVSLAERELSRDWCFIKVSCPYICS--FQMTWRRHSLE 511 (515)
Q Consensus 470 RP~~pIiavT~~~~~ar~l~L~~GV~p~~~~--~~~~w~~~~~~ 511 (515)
||.+|||++|..+++|||++|||||+|+++. ...+|++++-+
T Consensus 416 rP~~PIi~vt~~~~~aR~~~l~Rgv~Pvl~~~~~~~~~~~~~e~ 459 (501)
T KOG2323|consen 416 RPSVPIISVTRPVLAARQSHLYRGIIPVLYARSPVEDWSEDVES 459 (501)
T ss_pred CCCCCEEEEeccHHHHHHHHhhccceeeeecccchhhhhhhHHH
Confidence 9999999999999999999999999999997 34579988643
No 15
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=100.00 E-value=1.2e-105 Score=832.04 Aligned_cols=338 Identities=49% Similarity=0.800 Sum_probs=308.1
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEEecCCCeeeeeccCC
Q 010211 98 RRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQ 177 (515)
Q Consensus 98 ~r~TKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~I~lDL~GPkIRtG~l~~ 177 (515)
||||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|+++++++ ++++||+||+|||||||.+.+
T Consensus 1 mRkTKIi~TiGPas~~~e~l~~li~aGm~v~RiN~SHg~~e~~~~~i~~iR~a~~~~~-~~i~IllDl~GPkIRtg~l~~ 79 (348)
T PF00224_consen 1 MRKTKIIATIGPASESVEVLRKLIEAGMNVARINFSHGTHEEHKEIIENIREAEKELG-KPIAILLDLKGPKIRTGRLKD 79 (348)
T ss_dssp -SSSEEEEEESTTTCSHHHHHHHHHHTEEEEEEETTSS-HHHHHHHHHHHHHHHHHTT-TS-EEEEEE-TS-EBB-BBTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccEEEEEeeecCCHHHHHHHHHHHHHHHhccC-CceEEEeccCCCcceeeeecc
Confidence 7999999999999999999999999999999999999999999999999999999998 999999999999999999975
Q ss_pred ---cEEEecCCEEEEEeecC---CCCcceEEecccccccccCcCCEEEEeCCeeEEEEEEEeCCe-EEEEEeeCcEeccC
Q 010211 178 ---PIILKEGQEFNFTIKRG---VSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDL-VKCIVVDGGELKSR 250 (515)
Q Consensus 178 ---~i~L~~G~~v~lt~~~~---~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~~~~~~-v~~~V~~gG~L~s~ 250 (515)
+++|++||+|+|+.+.. .++++.|++||++|+++|++||+||+|||+|.|+|++++++. ++|+|.+||.|+++
T Consensus 80 g~~~i~L~~G~~v~lt~d~~~~~~g~~~~I~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~v~~~~~i~~~v~~~G~L~~~ 159 (348)
T PF00224_consen 80 GKKEIELKKGDTVTLTTDDSYEESGDSNRIPVNYPELFEDVKPGDKILIDDGKIELEVTEVDGDSSIKCEVLNGGKLKSR 159 (348)
T ss_dssp SSSSEEE-TTSEEEEESSCTGTTCBBSSEEEBSSTTHHHHS-TTEEEEETTTTEEEEEEEEESTEEEEEEESS-EEEESS
T ss_pred ccccccccCCCEEEEEeccccccccCcccccCCchhhhhhcCCCCEEEEcCCCcEEEEEEEcCCcceeEEeCCCCCccCC
Confidence 69999999999998854 346789999999999999999999999999999999999999 99999999999999
Q ss_pred ceeeeCCCccCCCCCCHhhHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh
Q 010211 251 RHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA 330 (515)
Q Consensus 251 KgVnlpg~~~~lp~ltekD~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~ 330 (515)
||||+|++.+++|.||++|++||+|++++|+|||++|||++++||.++|++|.+.+.+++|||||||++|++|||||+++
T Consensus 160 KgVnlp~~~~~lp~LtekD~~di~fa~~~~vD~IalSFVrsa~dV~~lr~~l~~~~~~~~iiaKIE~~~~v~nl~eI~~~ 239 (348)
T PF00224_consen 160 KGVNLPGVDLDLPALTEKDKEDIKFAVENGVDFIALSFVRSAEDVKELRKILGEKGKDIKIIAKIETKEAVENLDEILEA 239 (348)
T ss_dssp EBEEETTS---S-SS-HHHHHHHHHHHHTT-SEEEETTE-SHHHHHHHHHHHTCTTTTSEEEEEE-SHHHHHTHHHHHHH
T ss_pred ccceecccccccccCCHHHHHHHHHHHHcCCCEEEecCCCchHHHHHHHHHhhhcCcccceeeccccHHHHhhHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeeccccc
Q 010211 331 SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETA 410 (515)
Q Consensus 331 sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa 410 (515)
+|||||||||||+|+|+++|+.+||+|+++|+++|||||+||||||||+++|.|||||++|+||||.+|+||+|||+|||
T Consensus 240 sDgimiaRGDLg~e~~~e~v~~~Qk~ii~~~~~~~kpvi~ATq~Lesm~~~~~PTRaEv~Dv~nav~dg~d~vmLs~ETa 319 (348)
T PF00224_consen 240 SDGIMIARGDLGVEIPFEKVPIIQKRIIKKCNAAGKPVIVATQMLESMIKNPIPTRAEVSDVANAVLDGADAVMLSGETA 319 (348)
T ss_dssp SSEEEEEHHHHHHHSTGGGHHHHHHHHHHHHHHHT-EEEEESSSSGGGGTSSS--HHHHHHHHHHHHHT-SEEEESHHHH
T ss_pred cCeEEEecCCcceeeeHHHHHHHHHHHHHHHHHhCCCeeehhHhHHHHHhCCCCchHHHhhHHHHHHcCCCEEEecCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCC
Q 010211 411 HGKFPLKAVKVMHTVALRTESSLPVS 436 (515)
Q Consensus 411 ~G~yPveaV~~m~~I~~~aE~~~~~~ 436 (515)
+|+||+|||++|++|++++|+.+++.
T Consensus 320 ~G~~p~~~v~~~~~i~~~~E~~~~~~ 345 (348)
T PF00224_consen 320 IGKYPVEAVKTMARIIREAEKYLDYR 345 (348)
T ss_dssp TSSSHHHHHHHHHHHHHHHHHTS-HH
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999987653
No 16
>PRK06739 pyruvate kinase; Validated
Probab=100.00 E-value=2.5e-104 Score=819.31 Aligned_cols=330 Identities=38% Similarity=0.676 Sum_probs=319.5
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEEecCCCeeeeeccCC-c
Q 010211 100 KTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQ-P 178 (515)
Q Consensus 100 ~TKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~I~lDL~GPkIRtG~l~~-~ 178 (515)
++||||||||+|+++|+|++|+++|||+||||||||++++|.++++++|++++ +++||+||||||||||.+++ +
T Consensus 2 ~~~~V~TiGPas~~~e~l~~Li~aGm~v~RlNfSHGs~e~h~~~i~~vR~~~~-----~vaIl~Dl~GPkIR~G~~~~~~ 76 (352)
T PRK06739 2 TIDRICTIGPASNNKETLAQLINNGMKIVRLNLSHGTHESHKDIIRLVKSLDD-----SIKILGDVQGPKIRLGEIKGEQ 76 (352)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHhhh-----hcceeecCCCCcceecccCCCc
Confidence 68999999999999999999999999999999999999999999999999763 48899999999999999975 6
Q ss_pred EEEecCCEEEEEeecCCCCcceEEecccccccccCcCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEeccCceeeeCCC
Q 010211 179 IILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRGK 258 (515)
Q Consensus 179 i~L~~G~~v~lt~~~~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~~~~~~v~~~V~~gG~L~s~KgVnlpg~ 258 (515)
+.|++||+|+|+.+...++.+.++++|++|++.+++||.||+|||+|.|+|++++++.+.|+|++||.|+++||||+||+
T Consensus 77 i~l~~G~~v~lt~~~~~g~~~~i~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~v~~~~v~~~v~~gG~L~s~Kgvn~pg~ 156 (352)
T PRK06739 77 ITLQAGDSFILHTQPVTGSSTEASVDYEGIANDVKVGSRILMNDGEVELIVEKVSTDKIETKVKTGGNISSHKGVNLPGA 156 (352)
T ss_pred EEecCCCEEEEecCccCCCCCEEecchHHHHhhcCCCCEEEEeCCEEEEEEEEEeCCEEEEEEeeCcEEcCCCCeecccc
Confidence 99999999999987666777899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCHhhHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcC-CCceEEEEecChhhhhcHHHHHhhcCeeEEc
Q 010211 259 SANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCN-ADIHVIVKIESADSIPNLHSIISASDGAMVA 337 (515)
Q Consensus 259 ~~~lp~ltekD~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~-~~i~IIaKIEt~~aveNldeIl~~sDgImIg 337 (515)
.+++|.||+||++||+|++++|+|||++||||+++||.++|+++.+.| .+++|||||||++|++||++|++++||||||
T Consensus 157 ~~~lp~ltekD~~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~g~~~~~IiaKIE~~~av~nl~eI~~~sDgimVA 236 (352)
T PRK06739 157 IVRLPAITEKDKKDIQFLLEEDVDFIACSFVRKPSHIKEIRDFIQQYKETSPNLIAKIETMEAIENFQDICKEADGIMIA 236 (352)
T ss_pred cCCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhcCEEEEE
Confidence 999999999999999999999999999999999999999999999875 4899999999999999999999999999999
Q ss_pred CCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHH
Q 010211 338 RGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLK 417 (515)
Q Consensus 338 rgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPve 417 (515)
|||||+|+|+++||.+||+|+++|+++|||||+||||||||+++|.|||||++|+||||.||+|++|||+|||+|+||+|
T Consensus 237 RGDLgve~~~e~vp~~Qk~Ii~~c~~~gkPvIvATqmLeSM~~~p~PTRAEvsDVanaV~dG~D~vMLS~ETA~G~yPve 316 (352)
T PRK06739 237 RGDLGVELPYQFIPLLQKMMIQECNRTNTYVITATQMLQSMVDHSIPTRAEVTDVFQAVLDGTNAVMLSAESASGEHPIE 316 (352)
T ss_pred CcccccccCHHHHHHHHHHHHHHHHHhCCCEEEEcchHHhhccCCCCChHHHHHHHHHHHhCCcEEEEcccccCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCC
Q 010211 418 AVKVMHTVALRTESSLP 434 (515)
Q Consensus 418 aV~~m~~I~~~aE~~~~ 434 (515)
||++|++|++++|+...
T Consensus 317 aV~~m~~I~~~aE~~~~ 333 (352)
T PRK06739 317 SVSTLRLVSEFAEHVKK 333 (352)
T ss_pred HHHHHHHHHHHHHhhhc
Confidence 99999999999996544
No 17
>PRK14725 pyruvate kinase; Provisional
Probab=100.00 E-value=1.1e-95 Score=789.46 Aligned_cols=342 Identities=30% Similarity=0.475 Sum_probs=325.0
Q ss_pred CCCCCCccCCCCCCCCeEEEEecC-CCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEE
Q 010211 85 QCTPGKGVVGPNARRKTKIVCTIG-PSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIML 163 (515)
Q Consensus 85 ~~~~~~~~~~~~~~r~TKIi~TiG-Pss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~I~l 163 (515)
..++..++++++.+|+|||||||| |+++++++|++|+++||||||||||||++++|+++|++||++++++| ++|+|++
T Consensus 125 ~~~~~~l~G~~~~~R~tkImvTlg~~Aa~d~e~i~~Li~aGmdvaRINcAHg~~e~w~~mi~~vR~a~~~~g-r~~~I~m 203 (608)
T PRK14725 125 DEHAEALLGPPPSGRPTRIMVTLPTEAADDPDLVRRLLAAGMDIARINCAHDDPEAWRAMIANVRTAEEELG-RRCRIAM 203 (608)
T ss_pred HHHHHHhcCCCCCCCCceEEEeCCCcccCCHHHHHHHHHcCCCEeeeECCCCCHHHHHHHHHHHHHHHHHcC-CCEEEEE
Confidence 345556788888999999999999 69999999999999999999999999999999999999999999999 9999999
Q ss_pred ecCCCeeeeeccCC------------------------------------------------------------------
Q 010211 164 DTKGPEVRSGDVPQ------------------------------------------------------------------ 177 (515)
Q Consensus 164 DL~GPkIRtG~l~~------------------------------------------------------------------ 177 (515)
||+|||||||.+..
T Consensus 204 DL~GPKiRtG~l~~g~~v~~~~p~rd~~G~v~~pa~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~l~~Gd~i~~~DaRg~ 283 (608)
T PRK14725 204 DLAGPKLRTGPIAPGPRVIKLRPTRDALGRVLTPARLWLTASESPPPSPPPGPVGLPVDPEWLARLEPGDELRFTDARGK 283 (608)
T ss_pred eCCCCcceEEecCCCccccccccccccccccccchhheeecccCCCCCCCccccccccChhhhhhcCCCceeeeeecccc
Confidence 99999999999953
Q ss_pred ------------------------------------------------cEEEecCCEEEEEeecCCC-----Ccc--eEE
Q 010211 178 ------------------------------------------------PIILKEGQEFNFTIKRGVS-----TED--TVS 202 (515)
Q Consensus 178 ------------------------------------------------~i~L~~G~~v~lt~~~~~~-----~~~--~i~ 202 (515)
++.|++||.++|+.+...+ +.. .|+
T Consensus 284 ~R~l~V~~~~~~~~~~~~~~~~Y~~~G~~l~~~~~~~~~v~~~p~~~~~i~L~~Gd~l~lt~~~~~~~~~~~~~~~~~i~ 363 (608)
T PRK14725 284 KRKLTVTEVDDEGVLAEGSQTAYLANGTLLRLGRHDSTRVGGLPPVEQKLRLKVGDRLVLTRDDAPGDPAQGDAPPARIS 363 (608)
T ss_pred ceeeeEEeecCceeEEeecceeeeccCceeeeccccccccccccccCcceEecCCCEEEEecCCcCCccccCCCCccEEE
Confidence 4799999999999874332 344 899
Q ss_pred ecccccccccCcCCEEEEeCCeeEEEEEEEeCCeEEEEEee----CcEeccCceeeeCCCccCCCCCCHhhHHHhhcchh
Q 010211 203 VNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVD----GGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVD 278 (515)
Q Consensus 203 v~~~~l~~~v~~Gd~IliDDG~I~l~V~~~~~~~v~~~V~~----gG~L~s~KgVnlpg~~~~lp~ltekD~~dI~~al~ 278 (515)
|+|+++++.+++||.||+|||+|.++|++++++.++|+|++ ||.|+++||||+||+.+++|.||+||++||+|+++
T Consensus 364 ~t~p~l~~~v~~G~~VlidDG~I~l~V~~~~~~~v~~~V~~a~~~gg~L~s~KGiNlP~~~l~lp~LTekD~~dl~f~~~ 443 (608)
T PRK14725 364 CTLPEAFRAARVGERVWFDDGKIGAVVVKVEADEVELRITHARPGGSKLKAGKGINLPDSHLPLPALTDKDLEDLAFVAK 443 (608)
T ss_pred echHHHHHhcCCCCEEEEeCCeEEEEEEEEECCEEEEEEEEecCCCCEecCCCceecCCCCCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred cCCcEEEecccCCHHHHHHHHHHHHhcC-CCceEEEEecChhhhhcHHHHHhhc-----CeeEEcCCcccccCCCCCHHH
Q 010211 279 NQVDFYAVSFVKDAKVVHELKDYLKSCN-ADIHVIVKIESADSIPNLHSIISAS-----DGAMVARGDLGAELPIEDVPL 352 (515)
Q Consensus 279 ~gvD~ValSfVrsa~dv~~vr~~l~~~~-~~i~IIaKIEt~~aveNldeIl~~s-----DgImIgrgDLg~elg~e~v~~ 352 (515)
+ +|+|++|||++++||..++++|.+.+ .++.||+||||++|++||++|+.++ |||||||||||+|+|+++|+.
T Consensus 444 ~-vD~ValSFVrs~~DV~~lr~~L~~~g~~~~~IiaKIEt~~av~nL~eIl~~am~~~~DGIMIARGDLgvEi~~e~lp~ 522 (608)
T PRK14725 444 H-ADIVALSFVRSPEDVRLLLDALEKLGADDLGVVLKIETRRAFENLPRILLEAMRHPRFGVMIARGDLAVEVGFERLAE 522 (608)
T ss_pred h-CCEEEECCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhhccCCCcEEEEECCccccccCHHHHHH
Confidence 8 99999999999999999999998875 4799999999999999999999986 999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHHHHHHHHhcC
Q 010211 353 LQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESS 432 (515)
Q Consensus 353 aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~ 432 (515)
+||+||++|+++|||||+||||||||+++|.|||||++|+|||+ |+||+||| +|+||+|||++|++|++++|++
T Consensus 523 iQk~Ii~~c~~~~kPVI~ATQmLESM~~~p~PTRAEvtDVAnAv--gaD~VMLS----~G~yPveAV~~l~~I~~r~e~~ 596 (608)
T PRK14725 523 VQEEILWLCEAAHVPVIWATQVLESLAKKGLPSRAEITDAAMAL--RAECVMLN----KGPHIVEAVRVLDDILRRMEEH 596 (608)
T ss_pred HHHHHHHHHHHcCCCEEEEcchHhhhccCCCCCchhHHHHHhhh--cCCEEeec----CCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999 99999999 9999999999999999999987
Q ss_pred CC
Q 010211 433 LP 434 (515)
Q Consensus 433 ~~ 434 (515)
..
T Consensus 597 ~~ 598 (608)
T PRK14725 597 QR 598 (608)
T ss_pred hh
Confidence 64
No 18
>PRK08187 pyruvate kinase; Validated
Probab=100.00 E-value=7.8e-94 Score=768.42 Aligned_cols=342 Identities=27% Similarity=0.455 Sum_probs=324.4
Q ss_pred CCCCCCccCCCCCCCCeEEEEec-CCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEE
Q 010211 85 QCTPGKGVVGPNARRKTKIVCTI-GPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIML 163 (515)
Q Consensus 85 ~~~~~~~~~~~~~~r~TKIi~Ti-GPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~I~l 163 (515)
..++..+|++++.+|+||||||| ||+++++|+|++|+++||||||||||||++++|+++|++||++++++| ++|+|++
T Consensus 119 ~~~~~~l~g~~~~~r~tkIv~Tlg~pa~~~~e~i~~Li~aGmdvaRiN~SHg~~e~~~~~i~~vR~a~~~~g-~~i~Il~ 197 (493)
T PRK08187 119 AAHTEELFGPRPAARRTRIMVTLPSEAADDPDFVLRLAERGMDCARINCAHDDPAAWQAMIGHLRQAERATG-RRCKILM 197 (493)
T ss_pred HHHHHHHcCCCcCCCCceEEEECCCCccCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcC-CCeEEEE
Confidence 34556688888999999999999 599999999999999999999999999999999999999999999999 9999999
Q ss_pred ecCCCeeeeeccCC---cEEEecCCEEEEEeecCCC----CcceEEecccccccccCcCCEEEEeCCeeEEEEEEEeCCe
Q 010211 164 DTKGPEVRSGDVPQ---PIILKEGQEFNFTIKRGVS----TEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDL 236 (515)
Q Consensus 164 DL~GPkIRtG~l~~---~i~L~~G~~v~lt~~~~~~----~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~~~~~~ 236 (515)
||+|||||||.+.+ ++.|++||.|+|+.+...+ +...|+|+|++|++.+++||.||+|||+|.|+|++++++.
T Consensus 198 DL~GPKIRtG~l~~~~~~~~l~~Gd~i~l~~~~~~~~~~~~~~~i~~~~~~l~~~v~~Gd~IlidDG~I~l~V~~v~~~~ 277 (493)
T PRK08187 198 DLAGPKIRTGAVAGPLGKTRLYTGDRLALVAQGPPRRIDEEHFQVTCTLPEILARLAVGARVWIDDGKLGARVERVGPGG 277 (493)
T ss_pred eCCCCceeecccCCCCccEEecCCCEEEEeccccccCCCCCccEEEechHHHHHhcCCCCEEEEeCCeEEEEEEEEeCCE
Confidence 99999999999964 4899999999998874322 3568999999999999999999999999999999999999
Q ss_pred EEEEEe----eCcEeccCceeeeCCCccCCCCCCHhhHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcC----CC
Q 010211 237 VKCIVV----DGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCN----AD 308 (515)
Q Consensus 237 v~~~V~----~gG~L~s~KgVnlpg~~~~lp~ltekD~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~----~~ 308 (515)
+.|+|+ +||+|+++||||+||+.+.+|.+|++|.+||+|+++ ++|+|++|||++++||..++++|.+.+ .+
T Consensus 278 v~~~V~~~~~~gg~L~~~KgiNlP~~~vrin~LtekD~~DL~f~~~-~vD~I~lSfV~saeDV~~l~~~L~~~~~~~~~~ 356 (493)
T PRK08187 278 ALLEVTHARPKGLKLKPEKGLNFPDTALDLPALTEKDRADLDFVAR-HADLVGYSFVQSPGDVEALQAALAARRPDDWRK 356 (493)
T ss_pred EEEEEEEecCCCeEecCCCcccccCceecCCCCCHhHHHHHHHHHh-cCCEEEECCCCCHHHHHHHHHHHHHhCCCCCCC
Confidence 999999 999999999999999999999999999999999998 699999999999999999999998765 47
Q ss_pred ceEEEEecChhhhhcHHHHHhhcC-----eeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCC
Q 010211 309 IHVIVKIESADSIPNLHSIISASD-----GAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPT 383 (515)
Q Consensus 309 i~IIaKIEt~~aveNldeIl~~sD-----gImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~ 383 (515)
+.||+||||++|++|+++|+.++| |||||||||++|+|+++++..|++|+.+|+++|||||+||||||||+++|.
T Consensus 357 ~~IIaKIET~~gv~Nl~eI~~~ad~~~v~GImiARGDLgvEig~e~~p~~Qk~II~~craagkpvI~ATQmLESM~~~p~ 436 (493)
T PRK08187 357 LGLVLKIETPRAVANLPELIVQAAGRQPFGVMIARGDLAVEIGFERLAEMQEEILWLCEAAHVPVIWATQVLEGLVKKGL 436 (493)
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCcCCCcEEEEEchHhhhhcCcccChHHHHHHHHHHHHhCCCeEEEchhhHhhccCCC
Confidence 999999999999999999998887 999999999999999999999999999999999999999999999999999
Q ss_pred cChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHHHHHHHHhcCCC
Q 010211 384 PTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLP 434 (515)
Q Consensus 384 PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~ 434 (515)
|||||++|+||+ +|+||+||| +|+||+|||++|++|+.++|+++.
T Consensus 437 PTRAEvtDvAna--dgaDavMLs----~G~ypveaV~~l~~I~~~~e~~~~ 481 (493)
T PRK08187 437 PSRAEMTDAAMA--ARAECVMLN----KGPYLVEAVTFLDDLLARMDGHQH 481 (493)
T ss_pred CchHHHHHHHhh--cCCCEEeec----CCCCHHHHHHHHHHHHHHHHHhhh
Confidence 999999999997 999999999 999999999999999999998743
No 19
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=99.74 E-value=5.8e-18 Score=169.23 Aligned_cols=133 Identities=26% Similarity=0.301 Sum_probs=115.7
Q ss_pred CCCHhhHHHhhcchhcCCcEEEecccCCHHHHHHHH--------------------------HHHHhcCCCceEEEEecC
Q 010211 264 SITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELK--------------------------DYLKSCNADIHVIVKIES 317 (515)
Q Consensus 264 ~ltekD~~dI~~al~~gvD~ValSfVrsa~dv~~vr--------------------------~~l~~~~~~i~IIaKIEt 317 (515)
.+...|...|+++++.|+++|.+|+|++++|++++. +|++.+|+++.++++|||
T Consensus 68 Rvp~~~~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~~vi~~IEt 147 (249)
T TIGR03239 68 RPPWNEPVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLVQIES 147 (249)
T ss_pred ECCCCCHHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccccEEEEEECC
Confidence 344567888999999999999999999999999874 577888999999999999
Q ss_pred hhhhhcHHHHHhh--cCeeEEcCCcccccCCC------CCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHH
Q 010211 318 ADSIPNLHSIISA--SDGAMVARGDLGAELPI------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEV 389 (515)
Q Consensus 318 ~~aveNldeIl~~--sDgImIgrgDLg~elg~------e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv 389 (515)
++|++|+|+|+++ +|++++|++||+.++|. +++..+.++++.+|+++|||+++ ..+.|.
T Consensus 148 ~~av~n~~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~~g~---------~~~~~~---- 214 (249)
T TIGR03239 148 QKGVDNVDEIAAVDGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKPCGI---------LAPVEA---- 214 (249)
T ss_pred HHHHHhHHHHhCCCCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEE---------cCCCHH----
Confidence 9999999999998 99999999999999997 47889999999999999999997 334443
Q ss_pred hHHHHHHHhCCcEEeeccccc
Q 010211 390 SDIAIAVREGADAVMLSGETA 410 (515)
Q Consensus 390 ~DvanaV~~G~D~vmLs~ETa 410 (515)
+...++..|++.++++.|+.
T Consensus 215 -~~~~~~~~G~~~~~~~~D~~ 234 (249)
T TIGR03239 215 -DARRYLEWGATFVAVGSDLG 234 (249)
T ss_pred -HHHHHHHcCCCEEEEhHHHH
Confidence 34477888999888887765
No 20
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=99.74 E-value=6.5e-18 Score=169.52 Aligned_cols=133 Identities=26% Similarity=0.337 Sum_probs=115.0
Q ss_pred CCCHhhHHHhhcchhcCCcEEEecccCCHHHHHHH--------------------------HHHHHhcCCCceEEEEecC
Q 010211 264 SITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHEL--------------------------KDYLKSCNADIHVIVKIES 317 (515)
Q Consensus 264 ~ltekD~~dI~~al~~gvD~ValSfVrsa~dv~~v--------------------------r~~l~~~~~~i~IIaKIEt 317 (515)
.+.+.|...|+++++.|+++|.+|+|+++++++++ .+|++.+|+++.++++|||
T Consensus 75 Rvp~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~~an~~~~vi~~IEt 154 (256)
T PRK10558 75 RVPTNEPVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNITVLVQIES 154 (256)
T ss_pred ECCCCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCCCCCCcCCCCccccccccCChHHHHHHhccccEEEEEECC
Confidence 44556788899999999999999999999999986 3578888999999999999
Q ss_pred hhhhhcHHHHHhh--cCeeEEcCCcccccCCC------CCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHH
Q 010211 318 ADSIPNLHSIISA--SDGAMVARGDLGAELPI------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEV 389 (515)
Q Consensus 318 ~~aveNldeIl~~--sDgImIgrgDLg~elg~------e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv 389 (515)
++|++|++||+++ +|++|+|++||+.+||. +++..+.++++.+|+++||++++. .+.|..
T Consensus 155 ~~av~ni~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~~~G~~~g~~---------~~~~~~--- 222 (256)
T PRK10558 155 QQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFARAKAHGKPSGIL---------APVEAD--- 222 (256)
T ss_pred HHHHHHHHHHhCCCCCcEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCceEEc---------CCCHHH---
Confidence 9999999999998 89999999999999986 468999999999999999999972 334432
Q ss_pred hHHHHHHHhCCcEEeeccccc
Q 010211 390 SDIAIAVREGADAVMLSGETA 410 (515)
Q Consensus 390 ~DvanaV~~G~D~vmLs~ETa 410 (515)
...++..|++.++++.|+.
T Consensus 223 --~~~~~~~G~~~v~~~~D~~ 241 (256)
T PRK10558 223 --ARRYLEWGATFVAVGSDLG 241 (256)
T ss_pred --HHHHHHcCCCEEEEchHHH
Confidence 3477888888888887765
No 21
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=99.71 E-value=2e-17 Score=166.96 Aligned_cols=130 Identities=24% Similarity=0.320 Sum_probs=111.9
Q ss_pred HhhHHHhhcchhcCCcEEEecccCCHHHHHHHH---------------------------HHHHhcCCCceEEEEecChh
Q 010211 267 DKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELK---------------------------DYLKSCNADIHVIVKIESAD 319 (515)
Q Consensus 267 ekD~~dI~~al~~gvD~ValSfVrsa~dv~~vr---------------------------~~l~~~~~~i~IIaKIEt~~ 319 (515)
..|...|+.+++.|+++|.+|+|+|+++++++. +|++.+|+++.+|+||||++
T Consensus 77 ~~~~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~~~y~~~an~~~~vi~qiEt~~ 156 (267)
T PRK10128 77 EGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQANDSLCLLVQVESKT 156 (267)
T ss_pred CCCHHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCCCCCCCCCCCCccchhhccCChHHHHHHhccccEEEEEECCHH
Confidence 345678899999999999999999999998763 45666788999999999999
Q ss_pred hhhcHHHHHhh--cCeeEEcCCcccccCCC------CCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhH
Q 010211 320 SIPNLHSIISA--SDGAMVARGDLGAELPI------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSD 391 (515)
Q Consensus 320 aveNldeIl~~--sDgImIgrgDLg~elg~------e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~D 391 (515)
|++|++||+++ +|++++|++||+.++|+ +++..+.++++++|+++|||+++. .+.|. +
T Consensus 157 a~~n~~~I~~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk~~G~~---------~~~~~-----~ 222 (267)
T PRK10128 157 ALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFL---------AVDPD-----M 222 (267)
T ss_pred HHHhHHHHhCCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEc---------CCCHH-----H
Confidence 99999999998 99999999999999997 689999999999999999999973 33443 3
Q ss_pred HHHHHHhCCcEEeeccccc
Q 010211 392 IAIAVREGADAVMLSGETA 410 (515)
Q Consensus 392 vanaV~~G~D~vmLs~ETa 410 (515)
...++..|++.+.++.|+.
T Consensus 223 a~~~~~~G~~~v~~g~D~~ 241 (267)
T PRK10128 223 AQKCLAWGANFVAVGVDTM 241 (267)
T ss_pred HHHHHHcCCcEEEEChHHH
Confidence 3477888888888887765
No 22
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=99.71 E-value=3.1e-17 Score=160.75 Aligned_cols=135 Identities=27% Similarity=0.316 Sum_probs=116.0
Q ss_pred CCCCCHhhHHHhhcchhcCCcEEEecccCCHHHHHHH---------------------------HHHHHhcCCCceEEEE
Q 010211 262 LPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHEL---------------------------KDYLKSCNADIHVIVK 314 (515)
Q Consensus 262 lp~ltekD~~dI~~al~~gvD~ValSfVrsa~dv~~v---------------------------r~~l~~~~~~i~IIaK 314 (515)
+-.+...|...|+..++.|+..+.+|+|+++++.+++ .+|+.++|+++.+++|
T Consensus 71 vVR~p~g~~~~Ikq~LD~GAqtlliPmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~~i~dyl~~An~~~~~lvq 150 (255)
T COG3836 71 VVRPPVGDPVMIKQLLDIGAQTLLIPMVDTAEQARQAVAATRYPPLGERGVGSALARASRFGRIADYLAQANDEICLLVQ 150 (255)
T ss_pred eeeCCCCCHHHHHHHHccccceeeeeccCCHHHHHHHHHhccCCCCCccccchhhhhhhhcCCHHHHHHhcccceEEEEE
Confidence 3344556778889999999999999999999998876 4589999999999999
Q ss_pred ecChhhhhcHHHHHhh--cCeeEEcCCcccccCCC------CCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcCh
Q 010211 315 IESADSIPNLHSIISA--SDGAMVARGDLGAELPI------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTR 386 (515)
Q Consensus 315 IEt~~aveNldeIl~~--sDgImIgrgDLg~elg~------e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~Ptr 386 (515)
|||++|++|||+|+++ +|||||||+||+.+||+ ++|..+.+.++.+.+++||..++ ....|..
T Consensus 151 iEtr~gl~nLDaIaaveGVDgvFiGPaDLaas~G~~gn~~hpeV~~aI~~~~~~i~aaGKaagi---------l~~~p~~ 221 (255)
T COG3836 151 IETRAGLDNLDAIAAVEGVDGVFIGPADLAASLGHLGNPGHPEVQAAIEHIIARIRAAGKAAGI---------LAADPAD 221 (255)
T ss_pred EccHHHHHHHHHHHccCCCCeEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcCCcccc---------ccCCHHH
Confidence 9999999999999999 99999999999999998 68999999999999999999998 4466665
Q ss_pred HHHhHHHHHHHhCCcEEeeccccc
Q 010211 387 AEVSDIAIAVREGADAVMLSGETA 410 (515)
Q Consensus 387 AEv~DvanaV~~G~D~vmLs~ETa 410 (515)
+. .++..|+..+.+..+|.
T Consensus 222 a~-----~yl~lGa~fvavG~D~~ 240 (255)
T COG3836 222 AR-----RYLALGATFVAVGSDTG 240 (255)
T ss_pred HH-----HHHHhCCeEEEEeccHH
Confidence 54 67777777777766654
No 23
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=99.64 E-value=5.3e-16 Score=155.11 Aligned_cols=130 Identities=21% Similarity=0.254 Sum_probs=109.2
Q ss_pred HhhHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHH---------------------------hcCCCceEEEEecChh
Q 010211 267 DKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLK---------------------------SCNADIHVIVKIESAD 319 (515)
Q Consensus 267 ekD~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~---------------------------~~~~~i~IIaKIEt~~ 319 (515)
..|..+|+.+++.|+|+|.+|+|+++++++++.++++ ..|+++.++++|||++
T Consensus 71 ~~~~~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~~y~~~~n~~~~vi~~IEt~~ 150 (249)
T TIGR02311 71 IGDPVLIKQLLDIGAQTLLVPMIETAEQAEAAVAATRYPPMGIRGVGSALARASRWNRIPDYLQQADEEICVLLQVETRE 150 (249)
T ss_pred CCCHHHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCCccchhhccCChHHHHHHhhhceEEEEEecCHH
Confidence 3445588999999999999999999999998766543 3345788999999999
Q ss_pred hhhcHHHHHhh--cCeeEEcCCcccccCCC------CCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhH
Q 010211 320 SIPNLHSIISA--SDGAMVARGDLGAELPI------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSD 391 (515)
Q Consensus 320 aveNldeIl~~--sDgImIgrgDLg~elg~------e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~D 391 (515)
|++|+|+|+++ +|++|+|++||+.+||. +++..+.+++.++|+.+||+.++. ...|..
T Consensus 151 av~n~~eI~a~~gvd~l~~G~~DLs~slG~~~~~~~~~~~~a~~~v~~~~~~a~~~~Gi~---------~~~~~~----- 216 (249)
T TIGR02311 151 ALDNLEEIAAVEGVDGVFIGPADLAASMGHLGNPSHPEVQAAIDDAIERIKAAGKAAGIL---------TADPKL----- 216 (249)
T ss_pred HHHHHHHHHCCCCCcEEEECHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCCceeec---------CCCHHH-----
Confidence 99999999988 89999999999999997 467788899999999999999983 234433
Q ss_pred HHHHHHhCCcEEeeccccc
Q 010211 392 IAIAVREGADAVMLSGETA 410 (515)
Q Consensus 392 vanaV~~G~D~vmLs~ETa 410 (515)
...++..|++.++++.|+.
T Consensus 217 ~~~~~~~G~~~~~~~~D~~ 235 (249)
T TIGR02311 217 ARQYLKLGALFVAVGVDTT 235 (249)
T ss_pred HHHHHHcCCCEEEEchHHH
Confidence 3477889999999987765
No 24
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=99.59 E-value=9.2e-16 Score=149.75 Aligned_cols=127 Identities=24% Similarity=0.279 Sum_probs=103.4
Q ss_pred HHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhc-------CCCceEEEEecChhhhhcHHHHHhh--cCeeEEcCCc
Q 010211 270 WEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSC-------NADIHVIVKIESADSIPNLHSIISA--SDGAMVARGD 340 (515)
Q Consensus 270 ~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~-------~~~i~IIaKIEt~~aveNldeIl~~--sDgImIgrgD 340 (515)
.+||+ +++.|+|+|.+|+|+++++++++.++++.. +.++.++++|||++||+|+++|+++ +|++++|++|
T Consensus 75 ~~Dl~-~l~~g~~gI~lP~ves~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eI~a~~~v~~l~~G~~D 153 (221)
T PF03328_consen 75 ERDLE-ALDAGADGIVLPKVESAEDARQAVAALRYPPAGRRGANGSTKIIPMIETPEGVENLEEIAAVPGVDGLFFGPAD 153 (221)
T ss_dssp HHHHH-HHHTTSSEEEETT--SHHHHHHHHHHHSHTTTCTTTHHCHSEEEEEE-SHHHHHTHHHHHTSTTEEEEEE-HHH
T ss_pred hhhhh-hcccCCCeeeccccCcHHHHHHHHHHHhhcccccccccCceEEEEeeccHHHHhCHHhhcccCCeeEEEeCcHH
Confidence 46777 899999999999999999999999888654 4679999999999999999999976 7999999999
Q ss_pred ccccCCCC------CHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHH--HhHHHHHHHhCCcEEee
Q 010211 341 LGAELPIE------DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE--VSDIAIAVREGADAVML 405 (515)
Q Consensus 341 Lg~elg~e------~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAE--v~DvanaV~~G~D~vmL 405 (515)
|+.+||.+ ++..+.++++.+|+++||+++-. ....+..++ ..++++++..|+|+-++
T Consensus 154 ls~~lG~~~~~~~~~~~~a~~~v~~aa~a~g~~~i~~--------~~~~~~d~~~~~~~~~~~~~~G~dg~~~ 218 (221)
T PF03328_consen 154 LSASLGIPGQPDHPEVLEARSKVVLAARAAGKPAIDG--------VFPDFEDAEGLEAEGFRARALGFDGKLC 218 (221)
T ss_dssp HHHHTTTTTSTTSHHHHHHHHHHHHHHHHTTEEEEEE--------EESSSSHHHHHHHHHHHCCEEEEHHCCC
T ss_pred HHhhhccCCCCcchHHHHHHHHHHHHHHHcCCCeEEE--------eeCCHHHHHHHHHHHHHHHHHccccccc
Confidence 99999983 58899999999999999966542 234555555 66788888888887654
No 25
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=99.52 E-value=1.5e-14 Score=128.23 Aligned_cols=52 Identities=10% Similarity=-0.086 Sum_probs=45.9
Q ss_pred HhhccCCChHHHHHHHhcCCCCeEEEEeCCHHHHHhcccccceEEEEcCCcc
Q 010211 452 GSNFKSLSAFINNLCLHKSLWHEIFVSLAERELSRDWCFIKVSCPYICSFQM 503 (515)
Q Consensus 452 a~~v~t~sG~tA~~iS~~RP~~pIiavT~~~~~ar~l~L~~GV~p~~~~~~~ 503 (515)
++.++|.||+||+++|||||.+||||+|++++++|||+|+|||+|++++...
T Consensus 19 ~Ivv~T~sG~ta~~isk~RP~~pIiavt~~~~~~r~l~l~~GV~p~~~~~~~ 70 (117)
T PF02887_consen 19 AIVVFTESGRTARLISKYRPKVPIIAVTPNESVARQLSLYWGVYPVLIEEFD 70 (117)
T ss_dssp EEEEE-SSSHHHHHHHHT-TSSEEEEEESSHHHHHHGGGSTTEEEEECSSHS
T ss_pred EEEEECCCchHHHHHHhhCCCCeEEEEcCcHHHHhhhhcccceEEEEecccc
Confidence 3558999999999999999999999999999999999999999999886543
No 26
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=99.35 E-value=4.2e-12 Score=145.06 Aligned_cols=146 Identities=18% Similarity=0.175 Sum_probs=115.5
Q ss_pred HhhHHHhhcch-hcCCcE--EEecccCCHHHHHHHHHHHHhc-----CCCceEEEEecChhhhhcHHHHHhhcCeeEEcC
Q 010211 267 DKDWEDIKFGV-DNQVDF--YAVSFVKDAKVVHELKDYLKSC-----NADIHVIVKIESADSIPNLHSIISASDGAMVAR 338 (515)
Q Consensus 267 ekD~~dI~~al-~~gvD~--ValSfVrsa~dv~~vr~~l~~~-----~~~i~IIaKIEt~~aveNldeIl~~sDgImIgr 338 (515)
..+.+.|..++ +.|+.. |.+|||++++++.++++.+... +.+++++++||+++|+.|+|+|++++|+++||+
T Consensus 613 ~~qlraI~ral~d~G~~~~~Im~PmV~s~eE~~~~~~~~~~~g~~~~~~~~~vg~mIEtp~av~~~d~Ia~~vDfisIGt 692 (782)
T TIGR01418 613 RLECRAIKRVREEMGLTNVEVMIPFVRTPEEGKRALEIMAEEGLRRGKNGLEVYVMCEVPSNALLADEFAKEFDGFSIGS 692 (782)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEECcHHHHHHHHHHHHhCCEEEECc
Confidence 34556677777 788888 9999999999999998887643 345899999999999999999999999999999
Q ss_pred Ccccc-cCCC---------------CCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcE
Q 010211 339 GDLGA-ELPI---------------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADA 402 (515)
Q Consensus 339 gDLg~-elg~---------------e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~ 402 (515)
+||+. .||+ |.|..+.++++++|+++|||++++.+|-. ..|. .+.-++..|++.
T Consensus 693 nDLtq~~lg~dR~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~g~~vgicge~~~-----~~p~-----~~~~l~~~G~~~ 762 (782)
T TIGR01418 693 NDLTQLTLGVDRDSGLVAHLFDERNPAVLRLIEMAIKAAKEHGKKVGICGQAPS-----DYPE-----VVEFLVEEGIDS 762 (782)
T ss_pred hHHHHHHhCccCCchhhcccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCCC-----CCHH-----HHHHHHHcCCCE
Confidence 99998 5543 57999999999999999999998753110 0233 234778889999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHHHHhc
Q 010211 403 VMLSGETAHGKFPLKAVKVMHTVALRTES 431 (515)
Q Consensus 403 vmLs~ETa~G~yPveaV~~m~~I~~~aE~ 431 (515)
+.++.+ .+..++..++++|+
T Consensus 763 ls~~~d---------~~~~~k~~i~~~e~ 782 (782)
T TIGR01418 763 ISLNPD---------AVLRTRLQVAEVEK 782 (782)
T ss_pred EEECcc---------hHHHHHHHHHHhcC
Confidence 988743 44556666677664
No 27
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=99.33 E-value=5.8e-12 Score=144.06 Aligned_cols=148 Identities=20% Similarity=0.196 Sum_probs=118.2
Q ss_pred CHhhHHHhhcchh-cCCcE--EEecccCCHHHHHHHHHHHHhc-----CCCceEEEEecChhhhhcHHHHHhhcCeeEEc
Q 010211 266 TDKDWEDIKFGVD-NQVDF--YAVSFVKDAKVVHELKDYLKSC-----NADIHVIVKIESADSIPNLHSIISASDGAMVA 337 (515)
Q Consensus 266 tekD~~dI~~al~-~gvD~--ValSfVrsa~dv~~vr~~l~~~-----~~~i~IIaKIEt~~aveNldeIl~~sDgImIg 337 (515)
-..+.+.|..+++ .|++. |.+|||++++++++++++++.. +++++++++|||++|+.|+|+|++++|+++||
T Consensus 619 f~~qlraI~rald~~G~~~~~ImvPmV~s~eEa~~~~~~~~~~g~~~~~~~~~vg~MIEtp~av~~~deIa~~vDfi~IG 698 (795)
T PRK06464 619 FALECEAIKRVREEMGLTNVEVMIPFVRTVEEAEKVIELLAENGLKRGENGLKVIMMCEIPSNALLAEEFLEYFDGFSIG 698 (795)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEEcCHHHHHHHHHHHHhCCEEEEC
Confidence 3455677788888 68888 9999999999999998887543 34789999999999999999999999999999
Q ss_pred CCcccc-cCCC---------------CCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCC-cChHHHhHHHHHHHhCC
Q 010211 338 RGDLGA-ELPI---------------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPT-PTRAEVSDIAIAVREGA 400 (515)
Q Consensus 338 rgDLg~-elg~---------------e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~-PtrAEv~DvanaV~~G~ 400 (515)
++||+. .+|. |.|..+.++++++|+++|||++++.+|. .. |..+ ..++..|+
T Consensus 699 tnDLtq~~lg~dR~n~~v~~~~~~~hPav~~ai~~vi~aa~~~g~~vgicge~a------~~~p~~~-----~~l~~~G~ 767 (795)
T PRK06464 699 SNDLTQLTLGLDRDSGLVAHLFDERNPAVKKLISMAIKAAKKAGKYVGICGQAP------SDHPDFA-----EWLVEEGI 767 (795)
T ss_pred chHHHHHHhCcCCCchhhhhccCCCCHHHHHHHHHHHHHHHHcCCEEEEcCCCC------CCcHHHH-----HHHHHCCC
Confidence 999997 4543 5799999999999999999999865321 12 4333 36678899
Q ss_pred cEEeecccccCCCCHHHHHHHHHHHHHHHhcCC
Q 010211 401 DAVMLSGETAHGKFPLKAVKVMHTVALRTESSL 433 (515)
Q Consensus 401 D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~ 433 (515)
+.+.++. +++-.++..++++|+.+
T Consensus 768 ~~ls~~~---------d~~~~~k~~i~~~~~~~ 791 (795)
T PRK06464 768 DSISLNP---------DAVVDTWLAVAEVEKKI 791 (795)
T ss_pred CEEEEcc---------hhHHHHHHHHHHhHHHh
Confidence 9988863 35555667777777643
No 28
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=99.24 E-value=5.9e-11 Score=121.15 Aligned_cols=131 Identities=20% Similarity=0.195 Sum_probs=103.8
Q ss_pred HhhHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHh-------cCCCceEEEEecChhhhhcHHHHHhh---cCeeEE
Q 010211 267 DKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKS-------CNADIHVIVKIESADSIPNLHSIISA---SDGAMV 336 (515)
Q Consensus 267 ekD~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~-------~~~~i~IIaKIEt~~aveNldeIl~~---sDgImI 336 (515)
..-..||+..++.|+++|.+|+|++++++..+.+++.. .+.++.++++|||++|+.|+++|++. +|++++
T Consensus 72 ~~~~~di~~~l~~g~~givlPKv~s~~~v~~~~~~l~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eIa~a~~rv~~l~~ 151 (288)
T TIGR01588 72 PFGLADIKAVVKAGVDVVRLPKTDTAEDIHELEKLIERIEKEIGREVGSTKLMAAIESALGVVNAVEIARASKRLMGIAL 151 (288)
T ss_pred hhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEeCCHHHHHhHHHHHhcCCcceEEEe
Confidence 34457888888999999999999999999999877653 23468899999999999999999954 789999
Q ss_pred cCCcccccCCC------CCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHH--HhHHHHHHHhCCcEEee
Q 010211 337 ARGDLGAELPI------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE--VSDIAIAVREGADAVML 405 (515)
Q Consensus 337 grgDLg~elg~------e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAE--v~DvanaV~~G~D~vmL 405 (515)
|+.||+.+||. +++..+..+++.+|+++|+++|- + ....-...| ..+..++-..|+++-+.
T Consensus 152 G~~Dls~~lG~~~~~~~~~~~~ar~~iv~aaraag~~~id-~-------v~~~~~d~~~l~~~~~~~~~~Gf~Gk~~ 220 (288)
T TIGR01588 152 GAEDYVTDMKTSRSPDGTELFYARCAILHAARAAGIAAFD-T-------VYSDVNNEEGFLAEAQLIKQLGFDGKSL 220 (288)
T ss_pred CHHHHHHHcCCCcCCCchHHHHHHHHHHHHHHHcCCCccc-C-------CccCcCCHHHHHHHHHHHHHcCCCceec
Confidence 99999999997 35888999999999999999854 2 111111112 44556777888877664
No 29
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=99.23 E-value=3.8e-11 Score=132.89 Aligned_cols=133 Identities=16% Similarity=0.087 Sum_probs=109.6
Q ss_pred CCCCHhhHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHh-----------cCCCceEEEEecChhhhhcHHHHHhhc
Q 010211 263 PSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKS-----------CNADIHVIVKIESADSIPNLHSIISAS 331 (515)
Q Consensus 263 p~ltekD~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~-----------~~~~i~IIaKIEt~~aveNldeIl~~s 331 (515)
|.+-....+.|..+++.|...|.+|||+++++++++++.++. .+.++.+.++|||+.|+.|+|+|++.+
T Consensus 366 ~~lf~~QlrAI~ra~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~vg~mIEtpaav~~~d~ia~~v 445 (565)
T TIGR01417 366 EEILRTQLRAILRASAYGKLRIMFPMVATVEEIRAVKQELEEEKQELNDEGKAFDENIEVGVMIEIPSAALIADHLAKEV 445 (565)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhccccccCcEEEEEEcCHHHHHhHHHHHhhC
Confidence 444455567778889999999999999999999998876653 366799999999999999999999999
Q ss_pred CeeEEcCCccccc----------CCC------CCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHH
Q 010211 332 DGAMVARGDLGAE----------LPI------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIA 395 (515)
Q Consensus 332 DgImIgrgDLg~e----------lg~------e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~Dvana 395 (515)
|+++||++||+.. ++. |.|..+.++++++|+++||||+++..| .+.|. .+..+
T Consensus 446 Df~sIGtnDLsqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v~vCGe~------a~~p~-----~~~~l 514 (565)
T TIGR01417 446 DFFSIGTNDLTQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEGIWVGMCGEM------AGDER-----AIPLL 514 (565)
T ss_pred CEEEEChhHHHHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcCCeEEEeCCc------CCCHH-----HHHHH
Confidence 9999999999983 553 679999999999999999999986531 23343 34577
Q ss_pred HHhCCcEEeec
Q 010211 396 VREGADAVMLS 406 (515)
Q Consensus 396 V~~G~D~vmLs 406 (515)
+..|.+.+.++
T Consensus 515 ~~~G~~~lsv~ 525 (565)
T TIGR01417 515 LGLGLRELSMS 525 (565)
T ss_pred HHCCCCEEEEC
Confidence 88999988765
No 30
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=99.13 E-value=1.3e-10 Score=128.82 Aligned_cols=133 Identities=14% Similarity=0.077 Sum_probs=108.1
Q ss_pred CCCCHhhHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHh-----------cCCCceEEEEecChhhhhcHHHHHhhc
Q 010211 263 PSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKS-----------CNADIHVIVKIESADSIPNLHSIISAS 331 (515)
Q Consensus 263 p~ltekD~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~-----------~~~~i~IIaKIEt~~aveNldeIl~~s 331 (515)
|.+-....+.|..+.+.|...|.+|||.+++++.++++.++. .++++.+.++|||+.|+.|+|+|++.+
T Consensus 367 ~~~f~~QlrAilra~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~mIE~p~a~~~~d~i~~~v 446 (575)
T PRK11177 367 KEILHDQLRAILRASAFGKLRIMFPMIISVEEVRELKAEIEILKQELRDEGKAFDESIEIGVMVETPAAAVIARHLAKEV 446 (575)
T ss_pred HHHHHHHHHHHHHHHcCCCcEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhccccCCCcEEEEEEeCHHHHHhHHHHHhhC
Confidence 444445567777888899999999999999999998776642 356799999999999999999999999
Q ss_pred CeeEEcCCcccccC-----C-----C------CCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHH
Q 010211 332 DGAMVARGDLGAEL-----P-----I------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIA 395 (515)
Q Consensus 332 DgImIgrgDLg~el-----g-----~------e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~Dvana 395 (515)
|+++||++||+..+ + . |.|..+.++++++|+++|||++++.+| ...|... .-.
T Consensus 447 Df~sIGtnDL~qy~la~dr~n~~v~~~~~~~hPav~~~i~~v~~~a~~~g~~v~vCGe~------A~dp~~~-----~lL 515 (575)
T PRK11177 447 DFFSIGTNDLTQYTLAVDRGNELISHLYNPMSPSVLNLIKQVIDASHAEGKWTGMCGEL------AGDERAT-----LLL 515 (575)
T ss_pred CEEEECcHHHHHHHHHhccCCchhhccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCC------CCCHHHH-----HHH
Confidence 99999999999933 2 1 679999999999999999999998853 3345333 356
Q ss_pred HHhCCcEEeec
Q 010211 396 VREGADAVMLS 406 (515)
Q Consensus 396 V~~G~D~vmLs 406 (515)
+..|.|-+=.+
T Consensus 516 lglGi~~lSm~ 526 (575)
T PRK11177 516 LGMGLDEFSMS 526 (575)
T ss_pred HHCCCCeEEEC
Confidence 77888876554
No 31
>COG2301 CitE Citrate lyase beta subunit [Carbohydrate transport and metabolism]
Probab=98.56 E-value=1.5e-07 Score=96.18 Aligned_cols=132 Identities=25% Similarity=0.215 Sum_probs=107.8
Q ss_pred CHhhHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCce---EEEEecChhhhhcHHHHHhhc---CeeEEcCC
Q 010211 266 TDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIH---VIVKIESADSIPNLHSIISAS---DGAMVARG 339 (515)
Q Consensus 266 tekD~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~---IIaKIEt~~aveNldeIl~~s---DgImIgrg 339 (515)
|+.-.+||...+..++|+|.+|+++++.|+..+...+.+...... +++.|||++|+.|..+|+..+ .|+.+|..
T Consensus 66 t~~g~~Dl~av~~~~~d~v~LPK~e~~~~v~~~~~~l~~~~~~~~~~~l~a~iETa~gv~~~~eIA~a~~~l~~l~~Ga~ 145 (283)
T COG2301 66 TPWGADDLAAVVRSAVDGVVLPKVESAADVEELDQLLREAEAAAGREILIALIETARGVLNAEEIAAASGRLVGLAFGAN 145 (283)
T ss_pred ChhhHHHHHHHHhcCCCEEEccCcCchHHHHHHHHHhhhhhccccchhhHHhhhcHHHHhCHHHHhcCccceeeeEecHH
Confidence 345567887778889999999999999999999988876655444 999999999999999999984 89999999
Q ss_pred cccccCCC---C----CHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHH--HhHHHHHHHhCCcEEee
Q 010211 340 DLGAELPI---E----DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE--VSDIAIAVREGADAVML 405 (515)
Q Consensus 340 DLg~elg~---e----~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAE--v~DvanaV~~G~D~vmL 405 (515)
||..++|. + .+..+..+|+.+|+.+|+..+-. ....-...| ..+..++...|+|+-++
T Consensus 146 Dl~~~~g~~~~~~~~~~l~~ar~~iv~Aara~Gi~a~D~--------V~~d~~d~~g~~~e~~~a~~~Gf~GK~~ 212 (283)
T COG2301 146 DLAADLGARRSPDGTDPLRYARAMIVLAARAAGLAAIDG--------VYTDINDPEGFAREAAQAAALGFDGKTC 212 (283)
T ss_pred HHHHHhCCCCCCCCcchHHHHHHHHHHHHHHcCCCcccc--------cccccCCHHHHHHHHHHHHHcCCCcccc
Confidence 99999987 2 57779999999999999999652 112222222 56678888999988776
No 32
>cd00480 malate_synt Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=98.36 E-value=1.6e-05 Score=87.39 Aligned_cols=136 Identities=13% Similarity=0.151 Sum_probs=97.2
Q ss_pred EEEecccCCHHHHHHHHHHHHhcC-------CCceEEEEecChhhhhcHHHHHhh----cCeeEEcCCcccccCCCC---
Q 010211 283 FYAVSFVKDAKVVHELKDYLKSCN-------ADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLGAELPIE--- 348 (515)
Q Consensus 283 ~ValSfVrsa~dv~~vr~~l~~~~-------~~i~IIaKIEt~~aveNldeIl~~----sDgImIgrgDLg~elg~e--- 348 (515)
||.+|++++++++..+.+.+.... ..+++++.|||+.|+-|++||+.. +.|+..|+.|+..+++..
T Consensus 187 yi~LPKves~~Ev~~~~~~~~~~E~~~gl~~gtiki~vlIET~~a~~~~~eIa~alr~rv~gLn~G~~Dy~~sli~~~~~ 266 (511)
T cd00480 187 YFYLPKMESPLEARLWNDVFSRAEDYLGLPRGTIKATVLIETLPAAFEMDEILYELRDHSAGLNCGRWDYIFSEIKTFRN 266 (511)
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEECCHHHHHHHHHHHHhccCcceeeecChHHHHHHhcccccc
Confidence 889999999999999988875532 358899999999999999999976 569999999999998531
Q ss_pred ----------------C-HHHHHHHHHHHHHhcCCcEE--EEeccc-cccccCCCcChHH-HhHHHHHHHhCCcEEeecc
Q 010211 349 ----------------D-VPLLQEDIIRRCRSMQKPVI--VATNML-ESMIDHPTPTRAE-VSDIAIAVREGADAVMLSG 407 (515)
Q Consensus 349 ----------------~-v~~aqk~Ii~~c~~aGKPvi--vATqmL-eSMi~~~~PtrAE-v~DvanaV~~G~D~vmLs~ 407 (515)
. +...++.++.+|+++|.++| +++|+- ..|-..+....+. ..|-......|+|+-+.-
T Consensus 267 ~~~~~~pd~~~~~m~~~~l~ay~~~lv~aa~a~G~~AIdg~~a~i~~k~d~~~~~~d~~gl~~dk~~~~~~GfdGkwvi- 345 (511)
T cd00480 267 HPDFVLPDRAKVTMTSPFMRAYEKLLVKTCHRRGAHAMGGMAAQIPIKGDPAANEAAMAKVRADKLREAKAGHDGTWVA- 345 (511)
T ss_pred CccccCCcccccccccHHHHHHHHHHHHHHHHcCCCccccchhhccccCCcccchhHHHHHHHHHHHHHhCCCCccccc-
Confidence 1 44457789999999999874 333321 1111111101111 556678889999998763
Q ss_pred cccCCCCHHHHHHHHHHHH
Q 010211 408 ETAHGKFPLKAVKVMHTVA 426 (515)
Q Consensus 408 ETa~G~yPveaV~~m~~I~ 426 (515)
||- -|...+++-
T Consensus 346 ------HP~-qV~~~n~vF 357 (511)
T cd00480 346 ------HPG-LAPLAALVF 357 (511)
T ss_pred ------CHH-HHHHHHHHH
Confidence 673 344444444
No 33
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=98.30 E-value=2.3e-06 Score=88.06 Aligned_cols=228 Identities=19% Similarity=0.224 Sum_probs=144.9
Q ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHhC---CcEEEEec---CCCChHHHHHHHHHHHHHHhhcCCceEEE-EEecCCCe
Q 010211 97 ARRKTKIVCTIGPSTSSREMIWKLAEEG---MNVARLNM---SHGDHASHQKTIDLVKEYNSQFEDKAVAI-MLDTKGPE 169 (515)
Q Consensus 97 ~~r~TKIi~TiGPss~~~e~i~~li~aG---m~v~RiN~---SHg~~e~~~~~i~~ir~~~~~~~~~~i~I-~lDL~GPk 169 (515)
..+++++.+-+|- .+.++.+.+.| +=.+|--| .++..-...+..+..+++.+..+++||.| .+|+.|-|
T Consensus 16 dg~~i~l~aNi~~----~~d~~~~~~~gadGIGL~RtEfl~l~~~~~p~e~eq~~~y~~i~~~~~~~pV~iRtlD~g~dK 91 (293)
T PF02896_consen 16 DGTRIKLMANIGS----PEDAEKALELGADGIGLFRTEFLFLNRGRPPSEEEQYEIYRKIAEAMGGKPVTIRTLDIGGDK 91 (293)
T ss_dssp TS-BSEEEEEESS----GHHHHHHHHTT-SSEEEEECHHHHSSSSSHHHHHHHHHHHHHHHHHTTTSEEEEE---SBCCC
T ss_pred CCCEEEEEEeCCC----HHHHHHHHhcCCccccchhhhhhhhcCCCCchHHHHHHHHHHHHHHhccCcEEEEecCCCCCc
Confidence 4578999999854 45555555555 55788764 45666666777888888888777677764 33333221
Q ss_pred eeeeccCCcEEEecCCEEEEEeecCCCCcceEEeccc-ccccccCcCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEec
Q 010211 170 VRSGDVPQPIILKEGQEFNFTIKRGVSTEDTVSVNYD-DFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELK 248 (515)
Q Consensus 170 IRtG~l~~~i~L~~G~~v~lt~~~~~~~~~~i~v~~~-~l~~~v~~Gd~IliDDG~I~l~V~~~~~~~v~~~V~~gG~L~ 248 (515)
. +++- ...+ +.+-.|+
T Consensus 92 ~--------------------------------l~~~~~~~~-------------------------------E~NP~LG 108 (293)
T PF02896_consen 92 P--------------------------------LPYLSREPK-------------------------------EENPALG 108 (293)
T ss_dssp G--------------------------------SCSSHHCH---------------------------------SSGGGS
T ss_pred c--------------------------------CCccccccc-------------------------------ccccccc
Confidence 0 0000 0000 0000011
Q ss_pred cCceeeeCCCccCCCCCCHhhHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhc-----------CCCceEEEEecC
Q 010211 249 SRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSC-----------NADIHVIVKIES 317 (515)
Q Consensus 249 s~KgVnlpg~~~~lp~ltekD~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~-----------~~~i~IIaKIEt 317 (515)
.+|+.+- +.-|.+-..+.+.|..+...|-=.|.+|||++.+++.++++++++. +.++.+-++||+
T Consensus 109 -~RGiR~~---l~~p~~f~~QlrAilra~~~g~l~Im~PmV~~~~E~~~~~~~l~~~~~~L~~~g~~~~~~~~vG~MiEv 184 (293)
T PF02896_consen 109 -LRGIRRS---LAHPELFRTQLRAILRAAAEGNLRIMFPMVSTVEEVREAKEILEEVKEELREEGIPFDPDLPVGIMIEV 184 (293)
T ss_dssp -SBTHHHH---HHSHHHHHHHHHHHHHHHHHSEEEEEESS--SHHHHHHHHHHHHHHHHHHHHHTCTTGTT-EEEEEE-S
T ss_pred -ccccccc---ccchhhHHHHHHHHHHHHhhcCCEEEecCCCcHHHHHHHHHHHHHHHHHHHHhccCccccceEEEEech
Confidence 1122211 1223444455666766666665568899999999999999887655 356899999999
Q ss_pred hhhhhcHHHHHhhcCeeEEcCCcccccC-CC---------------CCHHHHHHHHHHHHHhcCCcEEEEeccccccccC
Q 010211 318 ADSIPNLHSIISASDGAMVARGDLGAEL-PI---------------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDH 381 (515)
Q Consensus 318 ~~aveNldeIl~~sDgImIgrgDLg~el-g~---------------e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~ 381 (515)
|.++--+|++++.+|.+-||-.||..-+ +. +-|..+.++++++|+++||||.++.+|-.
T Consensus 185 Psaal~~~~~~~~~DF~SIGtNDLtQy~la~DR~n~~v~~~~d~~~Pavl~li~~vi~~a~~~g~~vsvCGe~a~----- 259 (293)
T PF02896_consen 185 PSAALMADEFAKEVDFFSIGTNDLTQYTLAADRDNARVAYLYDPLHPAVLRLIKQVIDAAHKAGKPVSVCGEMAS----- 259 (293)
T ss_dssp HHHHHTHHHHHTTSSEEEEEHHHHHHHHHTS-TTCCTCGGGS-TTSHHHHHHHHHHHHHHHHTT-EEEEESGGGG-----
T ss_pred hHHHHHHHHHHHHCCEEEEChhHHHHHHhhcCCCCcchhhhcCcchHHHHHHHHHHHHHHhhcCcEEEEecCCCC-----
Confidence 9999999999999999999999984321 11 45888999999999999999999986432
Q ss_pred CCcChHHHhHHHHHHHhCCcEEeec
Q 010211 382 PTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 382 ~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
.|.-+ --.+..|.|.+-.+
T Consensus 260 -~p~~~-----~~Ll~lGi~~lSv~ 278 (293)
T PF02896_consen 260 -DPEAI-----PLLLGLGIRSLSVS 278 (293)
T ss_dssp -SHHHH-----HHHHHHT-SEEEE-
T ss_pred -CHHHH-----HHHHHcCCCEEEEC
Confidence 34433 36788999998876
No 34
>PRK09255 malate synthase; Validated
Probab=98.28 E-value=1.8e-05 Score=87.06 Aligned_cols=154 Identities=14% Similarity=0.116 Sum_probs=104.2
Q ss_pred CCCccCCCCCCHhhHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcC-------CCceEEEEecChhhhhcHHHHH
Q 010211 256 RGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCN-------ADIHVIVKIESADSIPNLHSII 328 (515)
Q Consensus 256 pg~~~~lp~ltekD~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~-------~~i~IIaKIEt~~aveNldeIl 328 (515)
|+.-+++-..--+|.+.+... -.|+ +|.+|++++++|+..+.+.+.... ..+++.+.|||+.|+-|++||+
T Consensus 183 ~~~l~Dfgl~~fhd~~~l~~~-g~gp-~i~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~vLIET~~A~~nm~EIa 260 (531)
T PRK09255 183 SGSLFDFALYFFHNAKELLAK-GSGP-YFYLPKLESHLEARLWNDVFVFAEDRLGLPRGTIKATVLIETLPAAFEMDEIL 260 (531)
T ss_pred chhHHHHHHHHHhhHHHHHhC-CCCc-EEeccCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEecCHHHHHHHHHHH
Confidence 344444422223444433322 3467 999999999999999888875432 4588999999999999999999
Q ss_pred hh----cCeeEEcCCcccccC----CC------C---------CHHHH-HHHHHHHHHhcCCcEEEEeccccccccCCCc
Q 010211 329 SA----SDGAMVARGDLGAEL----PI------E---------DVPLL-QEDIIRRCRSMQKPVIVATNMLESMIDHPTP 384 (515)
Q Consensus 329 ~~----sDgImIgrgDLg~el----g~------e---------~v~~a-qk~Ii~~c~~aGKPvivATqmLeSMi~~~~P 384 (515)
.. +.|+..||.|+..++ +. + .+..+ ++.++.+|+++|+.+|-. | ....|
T Consensus 261 ~a~r~Rl~gLn~G~~Dy~~S~ik~~~~~~~~~~pdR~~v~m~~~~l~Ay~~llV~aara~G~~AIdG------m-~a~ip 333 (531)
T PRK09255 261 YELREHIAGLNCGRWDYIFSYIKTLKNHPDFVLPDRAQVTMTKPFMRAYSRLLIKTCHKRGAHAMGG------M-AAFIP 333 (531)
T ss_pred HhccCceEEEEcChHHhhhhHHHHhccCCCCcCCcccccccchHHHHHHHHHHHHHHHHcCCCccCc------h-hhcCC
Confidence 75 689999999999763 21 1 24444 788889999999997641 2 11122
Q ss_pred ---Ch-------HH-HhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHHHHH
Q 010211 385 ---TR-------AE-VSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVA 426 (515)
Q Consensus 385 ---tr-------AE-v~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~I~ 426 (515)
.. +. ..|-......|+|+-++- ||- -|...+++-
T Consensus 334 ~k~D~~~n~~a~~g~r~dk~r~~~lGfDGkwvi-------HP~-qV~ianevF 378 (531)
T PRK09255 334 IKNDPEANEAALAKVRADKEREANDGHDGTWVA-------HPG-LVPTAMEVF 378 (531)
T ss_pred cccChhhhHHHHHHHHHHHHHHHhCCCCcceec-------CHH-HHHHHHHHH
Confidence 11 11 445567888999998873 674 344444444
No 35
>cd00727 malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=98.20 E-value=2.5e-05 Score=85.65 Aligned_cols=252 Identities=16% Similarity=0.178 Sum_probs=150.8
Q ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEEecCCCeeeeeccC
Q 010211 97 ARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVP 176 (515)
Q Consensus 97 ~~r~TKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~I~lDL~GPkIRtG~l~ 176 (515)
..||.-| | ||.+ ..++.+.+.+|++++-+.|--+..-.|+..|+--..+...+. ..+.- -+-.|.
T Consensus 65 ~~RRvei--t-gP~~--~km~~nAlnsgAd~~m~D~EDa~aPtwkn~i~gq~nl~~al~-~~i~~-~~~~gk-------- 129 (511)
T cd00727 65 QDRRVEI--T-GPVD--RKMVINALNSGAKVFMADFEDANAPTWENQVEGQINLRDAVR-GTISF-TSPEGK-------- 129 (511)
T ss_pred cCceeEE--e-CCCC--HHHHHHHhcCCCCEEEeCcccCCCCChHHHHHHHHHHHHHhc-CCCCc-cCCCCc--------
Confidence 3566665 3 7975 899999999999999999999988888777553333332222 00000 011121
Q ss_pred CcEEEecCCEEEEEeecCCCCcceEEecccccccccCcCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEeccCceeeeC
Q 010211 177 QPIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVR 256 (515)
Q Consensus 177 ~~i~L~~G~~v~lt~~~~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~~~~~~v~~~V~~gG~L~s~KgVnlp 256 (515)
.+.|..+..+.+.--++ +.+++. .|++| |=.+|
T Consensus 130 -~y~l~~~~~~l~VRprG------~hl~e~----------hv~~d------------------------------g~~~~ 162 (511)
T cd00727 130 -EYKLNDTPATLIVRPRG------WHLPEK----------HVLVD------------------------------GEPVS 162 (511)
T ss_pred -eeeeCCCCcEEEEecCC------CCCCcc----------hhhcC------------------------------CccCc
Confidence 12222222221111000 011111 01111 11234
Q ss_pred CCccCCCCCCHhhHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcC-------CCceEEEEecChhhhhcHHHHHh
Q 010211 257 GKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCN-------ADIHVIVKIESADSIPNLHSIIS 329 (515)
Q Consensus 257 g~~~~lp~ltekD~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~-------~~i~IIaKIEt~~aveNldeIl~ 329 (515)
+.-+++-..--+|.+.+...- .|+ ||.+|++++++|+..+.+.+.... ..+++.+.|||+.|+-|++||+.
T Consensus 163 ~~l~Dfgl~~fhd~~~l~~~g-~gp-yi~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~vLIET~~A~~nm~EIa~ 240 (511)
T cd00727 163 GSLFDFGLYFFHNAKALLARG-SGP-YFYLPKMESHLEARLWNDVFVFAQDYLGLPRGTIKATVLIETLPAAFEMDEILY 240 (511)
T ss_pred chhhhHHHHHHhhHHHHHhcC-CCc-EEecCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecCHHHHHHHHHHHH
Confidence 444444332234443332111 258 999999999999999888875432 45889999999999999999996
Q ss_pred h----cCeeEEcCCcccccCCC-----------C--------CHHHH-HHHHHHHHHhcCCcEEEEeccccccccCCCcC
Q 010211 330 A----SDGAMVARGDLGAELPI-----------E--------DVPLL-QEDIIRRCRSMQKPVIVATNMLESMIDHPTPT 385 (515)
Q Consensus 330 ~----sDgImIgrgDLg~elg~-----------e--------~v~~a-qk~Ii~~c~~aGKPvivATqmLeSMi~~~~Pt 385 (515)
. +.|+..|+.|+..+++. + .+..+ ++.++.+|+++|+.+|-. | ....|.
T Consensus 241 alr~Rl~gLn~G~~Dy~~sli~~~~~~~~~v~pdr~~v~m~~~~l~Ay~~llV~aa~a~G~~AIdG------m-~a~ip~ 313 (511)
T cd00727 241 ELRDHSAGLNCGRWDYIFSFIKKFRNHPDFVLPDRAQVTMTVPFMRAYSELLIKTCHRRGAHAMGG------M-AAQIPI 313 (511)
T ss_pred hccCceEEEEcChHHHHHHHHHhhccCCCccCCcccccccchHHHHHHHHHHHHHHHHcCCCcccc------h-hhcCCc
Confidence 5 68999999999998832 1 24444 677999999999997641 2 111221
Q ss_pred h----------HH-HhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHHHHHH
Q 010211 386 R----------AE-VSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVAL 427 (515)
Q Consensus 386 r----------AE-v~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~ 427 (515)
+ +. ..|-......|+|+-++- ||-+ |...+++-.
T Consensus 314 kdd~~~n~~~l~~~r~dk~~~~~lGfDGkwvi-------HP~q-V~ianevF~ 358 (511)
T cd00727 314 KDDPAANEAALAKVRADKLREATAGHDGTWVA-------HPGL-VPVAMEVFD 358 (511)
T ss_pred ccchhhHHHHHHHHHHHHHHHHhCCCCccccc-------CHHH-HHHHHHHHH
Confidence 1 11 445567888999998873 6743 334455443
No 36
>TIGR01344 malate_syn_A malate synthase A. This model represents plant malate synthase and one of two bacterial forms, designated malate synthase A. The distantly related malate synthase G is described by a separate model. This enzyme and isocitrate lyase are the two characteristic enzymes of the glyoxylate shunt. The shunt enables the cell to use acetyl-CoA to generate increased levels of TCA cycle intermediates for biosynthetic pathways such as gluconeogenesis.
Probab=98.15 E-value=3.6e-05 Score=84.36 Aligned_cols=141 Identities=13% Similarity=0.140 Sum_probs=97.3
Q ss_pred CCCccCCCCCCHhhHHHhhcchhc--CCcEEEecccCCHHHHHHHHHHHHhcC-------CCceEEEEecChhhhhcHHH
Q 010211 256 RGKSANLPSITDKDWEDIKFGVDN--QVDFYAVSFVKDAKVVHELKDYLKSCN-------ADIHVIVKIESADSIPNLHS 326 (515)
Q Consensus 256 pg~~~~lp~ltekD~~dI~~al~~--gvD~ValSfVrsa~dv~~vr~~l~~~~-------~~i~IIaKIEt~~aveNlde 326 (515)
|+.-+++-...-+|.+.+ ++. |. +|.+|++++++++..+.+.+.... ..+++.+.|||+.|+-|++|
T Consensus 163 ~~~l~Dfgl~~~hd~~~l---~~~g~Gp-~i~LPKves~~Ev~~~~~vf~~aE~~lglp~gtIk~~vlIET~~A~~nm~E 238 (511)
T TIGR01344 163 PGSLFDFGLYFFHNARAL---LKKGKGP-YFYLPKLESHQEARLWNDVFHFAQDFLGLPRGTIKATVLIETLPAAFEMDE 238 (511)
T ss_pred chHHHHHHHHHHhhHHHH---HhCCCCC-EEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCHHHHHhHHH
Confidence 444444433344444333 333 54 999999999999998888775332 45889999999999999999
Q ss_pred HHhh----cCeeEEcCCcccccCC----C------C---------CHHHH-HHHHHHHHHhcCCcEEEEeccccccc-cC
Q 010211 327 IISA----SDGAMVARGDLGAELP----I------E---------DVPLL-QEDIIRRCRSMQKPVIVATNMLESMI-DH 381 (515)
Q Consensus 327 Il~~----sDgImIgrgDLg~elg----~------e---------~v~~a-qk~Ii~~c~~aGKPvivATqmLeSMi-~~ 381 (515)
|+.. +.|+..||.|+..++. . + .+..+ ++.++.+|+++|+.+|-. |- +.
T Consensus 239 Ia~alr~Rl~gLn~G~~Dy~~S~ik~~~~~~~~~~pdr~~~~m~~~~l~Ay~~llV~aara~G~~AIdG------m~a~i 312 (511)
T TIGR01344 239 ILYELREHISGLNCGRWDYIFSFIKTLRNLPEFVLPDRDAVTMTKPFLNAYSKLLIQTCHRRGAHAMGG------MAAFI 312 (511)
T ss_pred HHHhccCceeEEEcChHHhhhhHHHHHhhCCCCcCCcccccccccHHHHHHHHHHHHHHHHcCCCccCc------hhccC
Confidence 9975 6899999999995544 1 1 23344 788889999999998641 21 11
Q ss_pred C---CcCh---HH---HhHHHHHHHhCCcEEeec
Q 010211 382 P---TPTR---AE---VSDIAIAVREGADAVMLS 406 (515)
Q Consensus 382 ~---~Ptr---AE---v~DvanaV~~G~D~vmLs 406 (515)
+ .|.- |- ..|-......|+|+-++-
T Consensus 313 p~k~D~~~n~~al~~vr~dk~re~~lGfDGkwvi 346 (511)
T TIGR01344 313 PIKGDPAANEAAMNKVRADKIREAKNGHDGTWVA 346 (511)
T ss_pred CcccChhhHHHHHHHHHHHHHHHHhCCCCccccC
Confidence 1 2211 01 445567788999998873
No 37
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=97.40 E-value=0.00019 Score=82.50 Aligned_cols=116 Identities=16% Similarity=0.133 Sum_probs=91.3
Q ss_pred cCCcEEEecccCCHHHHHHHHHHHHhc--------C---CCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccC-C
Q 010211 279 NQVDFYAVSFVKDAKVVHELKDYLKSC--------N---ADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAEL-P 346 (515)
Q Consensus 279 ~gvD~ValSfVrsa~dv~~vr~~l~~~--------~---~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~el-g 346 (515)
+|-=.|.+|||.+.+++.++++.+.+. + .++.+=++||+|.|+--+|++++.+|.+=||-.||..=+ +
T Consensus 549 ~g~l~im~Pmv~~~~E~~~~~~~~~~~~~~l~~~~~~~~~~~~~G~MiE~Paa~~~~~~~a~~~DF~SIGtNDL~Qy~la 628 (748)
T PRK11061 549 TGNLSILLPMVTSIDEVDEARRLIDRAGREVEEMLGYEIPKPRIGIMIEVPSMVFMLPHLASRVDFISVGTNDLTQYLLA 628 (748)
T ss_pred CCCeEEEhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEEehHHHHHHHHHHHHhCCEEEECccHHHHHHHH
Confidence 454568899999999999998877631 2 236789999999999999999999999999999986421 1
Q ss_pred C---------------CCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEee
Q 010211 347 I---------------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 405 (515)
Q Consensus 347 ~---------------e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmL 405 (515)
. |-|..+.++++++|+++||||.++.+| ...|.... -.+..|.|.+=.
T Consensus 629 ~DR~n~~v~~~~~~~~Pavlr~i~~~~~~a~~~g~~v~vCGe~------a~dp~~~~-----~L~glGi~~lS~ 691 (748)
T PRK11061 629 VDRNNTRVASLYDSLHPAMLRALKMIADEAEQHGLPVSLCGEM------AGDPMGAL-----LLIGLGYRHLSM 691 (748)
T ss_pred hcCCChHHHhhcCCCCHHHHHHHHHHHHHHhhCcCEEEEcCCc------ccCHHHHH-----HHHHCCCcEEcc
Confidence 1 468889999999999999999998863 33455443 567788877544
No 38
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=97.20 E-value=0.0012 Score=73.23 Aligned_cols=127 Identities=13% Similarity=0.091 Sum_probs=96.4
Q ss_pred hhHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHh-------c----CCCceEEEEecChhhhhcHHHHHhhcCeeEE
Q 010211 268 KDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKS-------C----NADIHVIVKIESADSIPNLHSIISASDGAMV 336 (515)
Q Consensus 268 kD~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~-------~----~~~i~IIaKIEt~~aveNldeIl~~sDgImI 336 (515)
-..+.|-+|-.+|-=.|.+|+|.+.++++.+++.+.+ . ++++.+=.+||+|.|.-.+|.+++.+|-+=|
T Consensus 373 tQLRAilRAS~~G~l~IM~PMI~~~~Ei~~~k~~~~~~k~~Lr~eg~~~~~~i~lGiMIEvPsAa~~a~~lakevDFfSI 452 (574)
T COG1080 373 TQLRAILRASAHGNLRIMFPMIASLEEIRWAKALLEEAKQELRAEGLAFDEKIELGIMIEVPSAALIADQLAKEVDFFSI 452 (574)
T ss_pred HHHHHHHHhhccCCeEEEEeccccHHHHHHHHHHHHHHHHHHHhcCCccccccceeEEEehhHHHHHHHHHHHhCCEeee
Confidence 3445555666678778999999999999999987741 1 3468888999999999999999999999999
Q ss_pred cCCcccc-----cCCC-----------CCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCC
Q 010211 337 ARGDLGA-----ELPI-----------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGA 400 (515)
Q Consensus 337 grgDLg~-----elg~-----------e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~ 400 (515)
|-+||.. +=+- |-|..+.+.+++.++++||||+++..| .++|.-.- -.+..|.
T Consensus 453 GTNDLtQYtLA~DR~n~~vs~ly~pl~PAVLrlI~~vi~~ah~~gkwvgmCGEl------AgD~~a~p-----lLlGlGl 521 (574)
T COG1080 453 GTNDLTQYTLAVDRGNAKVSHLYDPLHPAVLRLIKQVIDAAHRHGKWVGMCGEL------AGDPAATP-----LLLGLGL 521 (574)
T ss_pred cccHHHHHHHHHhcCChhhhhhcCCCCHHHHHHHHHHHHHHHHcCCeeeechhh------ccChhhHH-----HHHhcCc
Confidence 9999853 1111 568899999999999999999998742 33443222 3456666
Q ss_pred cEEee
Q 010211 401 DAVML 405 (515)
Q Consensus 401 D~vmL 405 (515)
|-+=+
T Consensus 522 dElSm 526 (574)
T COG1080 522 DELSM 526 (574)
T ss_pred chhcc
Confidence 65433
No 39
>PLN02626 malate synthase
Probab=97.02 E-value=0.0024 Score=70.55 Aligned_cols=123 Identities=18% Similarity=0.273 Sum_probs=88.2
Q ss_pred cEEEecccCCHHHHHHHHHHHHhc-------CCCceEEEEecChhhhhcHHHHHhh----cCeeEEcCCcc----cccCC
Q 010211 282 DFYAVSFVKDAKVVHELKDYLKSC-------NADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDL----GAELP 346 (515)
Q Consensus 282 D~ValSfVrsa~dv~~vr~~l~~~-------~~~i~IIaKIEt~~aveNldeIl~~----sDgImIgrgDL----g~elg 346 (515)
=||-+|+++++++++.+.+++... ...+++.+.|||..|+-|++||+.. +-|+..||-|+ ...++
T Consensus 213 pYfyLPKles~~Ear~w~dvf~~~E~~lGlp~GTIK~~vLIET~~A~f~meEIl~elr~r~agLn~GrwDyifS~ik~l~ 292 (551)
T PLN02626 213 PFFYLPKMEHSREARLWNDVFEAAEKMAGIPRGSIRATVLIETLPAVFQMEEILYELRDHSAGLNCGRWDYIFSFVKTFR 292 (551)
T ss_pred ceEeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEEeccHHHHHHHHHHHHHhhhheeeeecChHHHHhHHHHHhc
Confidence 389999999999999988776432 2568999999999999999999976 68999999999 44433
Q ss_pred C-------C--C----HHHHHH---HHHHHHHhcCCcEEE--EeccccccccCCCcChHH----HhHHHHHHHhCCcEEe
Q 010211 347 I-------E--D----VPLLQE---DIIRRCRSMQKPVIV--ATNMLESMIDHPTPTRAE----VSDIAIAVREGADAVM 404 (515)
Q Consensus 347 ~-------e--~----v~~aqk---~Ii~~c~~aGKPviv--ATqmLeSMi~~~~PtrAE----v~DvanaV~~G~D~vm 404 (515)
. + . ++.++. .++.+|+++|...|- ++++-- ...|.+..+. ..|-.....+|+|+-+
T Consensus 293 ~~~~~vlpDr~~vtM~~~f~rAY~~llV~ach~rG~~AIgGM~a~iP~--kdd~~~n~~al~~vr~dk~re~~~GfDG~w 370 (551)
T PLN02626 293 AHPDRLLPDRVQVGMTQHFMKSYVDLLIKTCHKRGVHAMGGMAAQIPI--KDDPAANEAALALVRKDKLREVRAGHDGTW 370 (551)
T ss_pred cCCCCCCCCccccchhhHHHHHHHHHHHHHHHhcCCcccccccccccC--CCChhhhHHHHHHHHHHHHHHHhcCCCcee
Confidence 2 1 1 444444 999999999999753 222100 0112222111 4556788999999988
Q ss_pred ec
Q 010211 405 LS 406 (515)
Q Consensus 405 Ls 406 (515)
.-
T Consensus 371 Vi 372 (551)
T PLN02626 371 AA 372 (551)
T ss_pred ec
Confidence 74
No 40
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=96.99 E-value=0.0041 Score=72.70 Aligned_cols=135 Identities=18% Similarity=0.151 Sum_probs=100.5
Q ss_pred CCCCCCHhhHHHhhcchhc----CCc---EEEecccCCHHHHHHHHHHHHhc--------C--CCceEEEEecChhhhhc
Q 010211 261 NLPSITDKDWEDIKFGVDN----QVD---FYAVSFVKDAKVVHELKDYLKSC--------N--ADIHVIVKIESADSIPN 323 (515)
Q Consensus 261 ~lp~ltekD~~dI~~al~~----gvD---~ValSfVrsa~dv~~vr~~l~~~--------~--~~i~IIaKIEt~~aveN 323 (515)
..|.+-+-..+.|-.|... |.. -|.+|||.+.+++..+++.+.+. + -++.+=++||+|.|.-.
T Consensus 668 ~~pei~~~QlrAil~Aa~~~~~~G~~~~~~IMiPmV~~~~E~~~~k~~i~~~~~~l~~~~g~~~~~~iG~MiE~P~aal~ 747 (856)
T TIGR01828 668 TYPEIYEMQVRAIMEAAVEVKKEGIDVHPEIMIPLVGEKNELKILKDVLEEVAAEVFKEYGVTVPYEIGTMIEIPRAALT 747 (856)
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccCCeEEEEEehHHHHHH
Confidence 3455555556666444332 632 68999999999999998877532 1 23688999999999999
Q ss_pred HHHHHhhcCeeEEcCCcccccC-CC----------------------------CCHHHHHHHHHHHHHh--cCCcEEEEe
Q 010211 324 LHSIISASDGAMVARGDLGAEL-PI----------------------------EDVPLLQEDIIRRCRS--MQKPVIVAT 372 (515)
Q Consensus 324 ldeIl~~sDgImIgrgDLg~el-g~----------------------------e~v~~aqk~Ii~~c~~--aGKPvivAT 372 (515)
+|+|++.+|.+-||-.||..-+ |+ +-|..+.++++++|++ +|+||+++.
T Consensus 748 ad~la~~~DFfSiGTNDLtQ~tlg~dR~~~~~~~~~y~~~~i~~~~P~~~ld~paV~~li~~~i~~a~~~~~~~~vgvCG 827 (856)
T TIGR01828 748 ADKIAEEADFFSFGTNDLTQMTFGFSRDDAGKFLPKYLEKGILEKDPFESLDQTGVGQLMRMAVEKGRQTRPNLKVGICG 827 (856)
T ss_pred HHHHHHhCCEEEECccHHHHHHhccCccchhhhHHHHHhcCcccCCcccccCcHHHHHHHHHHHHHHhhcCCCCEEEeCC
Confidence 9999999999999998875421 21 2367788999999998 999999987
Q ss_pred ccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 373 NMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 373 qmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
+| ...|.-.+ -++..|.|.+-.|
T Consensus 828 E~------a~dp~~i~-----~l~~~Gi~~~S~s 850 (856)
T TIGR01828 828 EH------GGDPSSIE-----FCHKIGLNYVSCS 850 (856)
T ss_pred CC------cCCHHHHH-----HHHHCCCCEEEEC
Confidence 53 45565444 5677799888766
No 41
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.49 E-value=0.024 Score=60.49 Aligned_cols=120 Identities=28% Similarity=0.272 Sum_probs=75.4
Q ss_pred HHHhhcchhcCCcEEEecc-------cCCHHHHHHHHHHHHhcCCCceEEE-EecChhhhhcHHHHHhhcCeeEEcCCcc
Q 010211 270 WEDIKFGVDNQVDFYAVSF-------VKDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISASDGAMVARGDL 341 (515)
Q Consensus 270 ~~dI~~al~~gvD~ValSf-------Vrsa~dv~~vr~~l~~~~~~i~IIa-KIEt~~aveNldeIl~~sDgImIgrgDL 341 (515)
.+.++...+.|+|+|.+.. ..++.++..+.+++++. ++.||+ .|-|.+....+.+ .=+|+||+|+|-=
T Consensus 144 ~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~--~ipVIaG~V~t~e~A~~l~~--aGAD~V~VG~G~G 219 (368)
T PRK08649 144 QELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL--DVPVIVGGCVTYTTALHLMR--TGAAGVLVGIGPG 219 (368)
T ss_pred HHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC--CCCEEEeCCCCHHHHHHHHH--cCCCEEEECCCCC
Confidence 3555666789999998843 22222566677777764 578888 8888877755543 3499999998852
Q ss_pred ccc-----C--CCCCHHHHHHHHHHHHHhc-------CCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 342 GAE-----L--PIEDVPLLQEDIIRRCRSM-------QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 342 g~e-----l--g~e~v~~aqk~Ii~~c~~a-------GKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
+.. . |++.+. +..+..++++++ +.|+|.+. +.-+ -.|++.++..|+|++|+-
T Consensus 220 s~~~t~~~~g~g~p~~~-ai~~~~~a~~~~l~~~~~~~vpVIAdG---------GI~~---~~diakAlalGAd~Vm~G 285 (368)
T PRK08649 220 AACTSRGVLGIGVPMAT-AIADVAAARRDYLDETGGRYVHVIADG---------GIGT---SGDIAKAIACGADAVMLG 285 (368)
T ss_pred cCCCCcccCCCCcCHHH-HHHHHHHHHHHhhhhhcCCCCeEEEeC---------CCCC---HHHHHHHHHcCCCeeccc
Confidence 111 1 223222 222333333332 68988753 3333 358999999999999973
No 42
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=96.49 E-value=0.0096 Score=69.77 Aligned_cols=135 Identities=19% Similarity=0.155 Sum_probs=101.0
Q ss_pred CCCCCCHhhHHHhhcchh----cCCc---EEEecccCCHHHHHHHHHHHH--------hcCC--CceEEEEecChhhhhc
Q 010211 261 NLPSITDKDWEDIKFGVD----NQVD---FYAVSFVKDAKVVHELKDYLK--------SCNA--DIHVIVKIESADSIPN 323 (515)
Q Consensus 261 ~lp~ltekD~~dI~~al~----~gvD---~ValSfVrsa~dv~~vr~~l~--------~~~~--~i~IIaKIEt~~aveN 323 (515)
..|.+.+-..+.|..|.. .|.+ -|.+|+|.+.+++..+++.+. +.|. +..+=++||+|.|.--
T Consensus 674 ~~pei~~~QlrAI~~Aa~~~~~~G~~~~~~IMiPmV~~~~E~~~~r~~i~~~~~~~~~e~g~~~~~~vG~MIEvP~Aal~ 753 (879)
T PRK09279 674 TYPEIYEMQARAIFEAAVELKKEGIDVVPEIMIPLVGTVKELKLVKAIIDAVAEEVFAEKGVKLDYKVGTMIELPRAALT 753 (879)
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEehHHHHHh
Confidence 446666666666654432 3643 489999999999999887652 2232 4679999999999999
Q ss_pred HHHHHhhcCeeEEcCCcccccC-CC----------------------------CCHHHHHHHHHHHHHh--cCCcEEEEe
Q 010211 324 LHSIISASDGAMVARGDLGAEL-PI----------------------------EDVPLLQEDIIRRCRS--MQKPVIVAT 372 (515)
Q Consensus 324 ldeIl~~sDgImIgrgDLg~el-g~----------------------------e~v~~aqk~Ii~~c~~--aGKPvivAT 372 (515)
.|+|++.+|.+=||-.||..-+ |+ +-|..+.+.+++++++ .|++++++.
T Consensus 754 ad~iA~~adFfSiGTNDLTQ~t~g~dRdd~~~fl~~y~~~~i~~~dPf~~lD~~aV~~Li~~~v~~~r~~~~~~~vgICG 833 (879)
T PRK09279 754 ADEIAEEAEFFSFGTNDLTQTTFGFSRDDAGKFLPDYLEKGILEEDPFESLDQEGVGELVEIAVERGRATRPDLKLGICG 833 (879)
T ss_pred HHHHHHhCCEEEEcccHHHHHHhccCccchhhhHHHHHhcCcccCCcchhcChHHHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 9999999999999999986422 22 2367778889999998 799999987
Q ss_pred ccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 373 NMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 373 qmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
+ +.+.|.-.+ -++..|.|.+-.|
T Consensus 834 E------~ggdp~~i~-----~l~~lGld~vS~s 856 (879)
T PRK09279 834 E------HGGDPASIE-----FCHKVGLDYVSCS 856 (879)
T ss_pred C------CccCHHHHH-----HHHHCCCCEEEEC
Confidence 5 355666544 6677899998776
No 43
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=96.21 E-value=0.1 Score=55.39 Aligned_cols=122 Identities=27% Similarity=0.330 Sum_probs=82.3
Q ss_pred HhhHHHhhcchhcCCcEEEe--cccCCHHHHHHHHHHHHhcCCCceEEE-EecChhhhhcHHHHHhh-cCeeEEcCCccc
Q 010211 267 DKDWEDIKFGVDNQVDFYAV--SFVKDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISA-SDGAMVARGDLG 342 (515)
Q Consensus 267 ekD~~dI~~al~~gvD~Val--SfVrsa~dv~~vr~~l~~~~~~i~IIa-KIEt~~aveNldeIl~~-sDgImIgrgDLg 342 (515)
+.|.+.++..++.|+|++.+ +...+...+..++ ++++...++.||+ .|-|.++.++| +.. +|+|-||=|-=+
T Consensus 107 ~~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik-~ik~~~~~~~viaGNV~T~e~a~~L---~~aGad~vkVGiGpGs 182 (352)
T PF00478_consen 107 DDDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIK-KIKKKFPDVPVIAGNVVTYEGAKDL---IDAGADAVKVGIGPGS 182 (352)
T ss_dssp TCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHH-HHHHHSTTSEEEEEEE-SHHHHHHH---HHTT-SEEEESSSSST
T ss_pred HHHHHHHHHHHHcCCCEEEccccCccHHHHHHHHH-HHHHhCCCceEEecccCCHHHHHHH---HHcCCCEEEEeccCCc
Confidence 45667777677889999877 4555555554454 4555556788777 99999999774 344 999999855322
Q ss_pred cc-------CCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEee
Q 010211 343 AE-------LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 405 (515)
Q Consensus 343 ~e-------lg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmL 405 (515)
+- +|.+ -.-+..+..++++++++|+|- ..+.-+ --|++.|+..|+|+|||
T Consensus 183 iCtTr~v~GvG~P-Q~tAv~~~a~~a~~~~v~iIA---------DGGi~~---sGDi~KAla~GAd~VMl 239 (352)
T PF00478_consen 183 ICTTREVTGVGVP-QLTAVYECAEAARDYGVPIIA---------DGGIRT---SGDIVKALAAGADAVML 239 (352)
T ss_dssp TBHHHHHHSBSCT-HHHHHHHHHHHHHCTTSEEEE---------ESS-SS---HHHHHHHHHTT-SEEEE
T ss_pred ccccccccccCCc-HHHHHHHHHHHhhhccCceee---------cCCcCc---ccceeeeeeecccceee
Confidence 22 2334 445667788899999999986 333332 56899999999999998
No 44
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=95.86 E-value=0.2 Score=52.52 Aligned_cols=123 Identities=27% Similarity=0.384 Sum_probs=78.9
Q ss_pred HhhHHHhhcchhcCCcEEEecccC-CHHHHHHHHHHHHhcCCCceEEE-EecChhhhhcHHHHHhh-cCeeEEc--CCcc
Q 010211 267 DKDWEDIKFGVDNQVDFYAVSFVK-DAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISA-SDGAMVA--RGDL 341 (515)
Q Consensus 267 ekD~~dI~~al~~gvD~ValSfVr-sa~dv~~vr~~l~~~~~~i~IIa-KIEt~~aveNldeIl~~-sDgImIg--rgDL 341 (515)
+++.+.++..++.|+|+|.+++.. +.+.+.+.-+.+++...++.|++ .+.|.+.... .++. +|+|.++ +|--
T Consensus 93 ~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~---l~~aGaD~I~vg~g~G~~ 169 (325)
T cd00381 93 EDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARD---LIDAGADGVKVGIGPGSI 169 (325)
T ss_pred hhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHH---HHhcCCCEEEECCCCCcC
Confidence 556677778889999998876532 22444444455555555677776 6666655544 3445 9999984 4321
Q ss_pred cc-----cCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEee
Q 010211 342 GA-----ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 405 (515)
Q Consensus 342 g~-----elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmL 405 (515)
.. ..|.+. ..+...+.+.++..++|+|.+ .+..+ -.|++.++..|+|++|+
T Consensus 170 ~~t~~~~g~g~p~-~~~i~~v~~~~~~~~vpVIA~---------GGI~~---~~di~kAla~GA~~Vmi 225 (325)
T cd00381 170 CTTRIVTGVGVPQ-ATAVADVAAAARDYGVPVIAD---------GGIRT---SGDIVKALAAGADAVML 225 (325)
T ss_pred cccceeCCCCCCH-HHHHHHHHHHHhhcCCcEEec---------CCCCC---HHHHHHHHHcCCCEEEe
Confidence 11 112232 345567777888889999863 33433 34788999999999998
No 45
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type. This family is the archaeal-type phosphoenolpyruvate carboxylase, although not every host species is archaeal. These sequences bear little resemblance to the bacterial/eukaryotic type. The members from Sulfolobus solfataricus and Methanothermobacter thermautotrophicus were verified experimentally, while the activity is known to be present in a number of other archaea.
Probab=95.74 E-value=0.025 Score=62.36 Aligned_cols=91 Identities=15% Similarity=0.172 Sum_probs=78.2
Q ss_pred CCcEEEecccCCHHHHHHHHHHHHhcC-----------------------CCceEEEEecChhhhhcHHHHHhh-c----
Q 010211 280 QVDFYAVSFVKDAKVVHELKDYLKSCN-----------------------ADIHVIVKIESADSIPNLHSIISA-S---- 331 (515)
Q Consensus 280 gvD~ValSfVrsa~dv~~vr~~l~~~~-----------------------~~i~IIaKIEt~~aveNldeIl~~-s---- 331 (515)
.+-.|.+||.++++|+..+..+.++++ ..+.||.-+||.+++.|.++|+.. .
T Consensus 122 pIfEvIisMT~s~sdil~V~~l~~~a~~~~~~~~~~~~~~~~e~~~~~~~~~i~VIPLFEt~~dL~~a~~Il~~~l~~~~ 201 (506)
T TIGR02751 122 PIFEVILPMTTSADEILNVHQYYEKAVAGKQSIELYDEVTVKEWLGEFKPKKIRVIPLIEDKDSLLNADEIVKEYAEAHE 201 (506)
T ss_pred ceEEEEeeCCCCHHHHHHHHHHHHHhcccccccccccccchhcccccCCCCCcCeecCcCCHHHHHhHHHHHHHHHHhcC
Confidence 566899999999999999888776654 135799999999999999999987 2
Q ss_pred ---CeeEEcCCcccccCCC----CCHHHHHHHHHHHHHhcCCcEEE
Q 010211 332 ---DGAMVARGDLGAELPI----EDVPLLQEDIIRRCRSMQKPVIV 370 (515)
Q Consensus 332 ---DgImIgrgDLg~elg~----e~v~~aqk~Ii~~c~~aGKPviv 370 (515)
--||+|+.|=+.+.|+ -.+..+|.++.+.|+++|.++..
T Consensus 202 ~~~qrVmLGySDSAkd~G~laA~~al~~Aq~~L~e~~ee~gV~l~p 247 (506)
T TIGR02751 202 PEYMRVFLARSDPALNYGMIAAVLSNKYALSRLYELSEETGISIYP 247 (506)
T ss_pred cCceEEEEecccccchhhHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 2589999999999997 36788999999999999999865
No 46
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=95.44 E-value=0.28 Score=54.40 Aligned_cols=124 Identities=25% Similarity=0.303 Sum_probs=80.6
Q ss_pred CHhhHHHhhcchhcCCcEEEeccc--CCHHHHHHHHHHHHhcCCCceEEE-EecChhhhhcHHHHHhh-cCeeEEc--CC
Q 010211 266 TDKDWEDIKFGVDNQVDFYAVSFV--KDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISA-SDGAMVA--RG 339 (515)
Q Consensus 266 tekD~~dI~~al~~gvD~ValSfV--rsa~dv~~vr~~l~~~~~~i~IIa-KIEt~~aveNldeIl~~-sDgImIg--rg 339 (515)
++.+.+.++..++.|+|.|.+-.. ++...+..++. +++.-.++.|++ -+-|++... ..++. +|+|.+| +|
T Consensus 239 ~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~-ik~~~~~~~v~aG~V~t~~~a~---~~~~aGad~I~vg~g~G 314 (495)
T PTZ00314 239 RPEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKK-LKSNYPHVDIIAGNVVTADQAK---NLIDAGADGLRIGMGSG 314 (495)
T ss_pred CHHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHH-HHhhCCCceEEECCcCCHHHHH---HHHHcCCCEEEECCcCC
Confidence 345567777778899999987643 34433333333 333334678888 566665554 34455 9999864 66
Q ss_pred c-----ccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 340 D-----LGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 340 D-----Lg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
= .-...|.+.+ .+...+.+.|++.|.|+|. ..+.-+ -.|++.|+..|+|++|+-
T Consensus 315 s~~~t~~~~~~g~p~~-~ai~~~~~~~~~~~v~vIa---------dGGi~~---~~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 315 SICITQEVCAVGRPQA-SAVYHVARYARERGVPCIA---------DGGIKN---SGDICKALALGADCVMLG 373 (495)
T ss_pred cccccchhccCCCChH-HHHHHHHHHHhhcCCeEEe---------cCCCCC---HHHHHHHHHcCCCEEEEC
Confidence 2 2223454543 4566778889999999887 334444 357889999999999984
No 47
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=95.21 E-value=0.065 Score=59.11 Aligned_cols=93 Identities=16% Similarity=0.166 Sum_probs=79.6
Q ss_pred hcCCcEEEecccCCHHHHHHHHHHHHhcC--------------CCceEEEEecChhhhhcHHHHHhh----------cCe
Q 010211 278 DNQVDFYAVSFVKDAKVVHELKDYLKSCN--------------ADIHVIVKIESADSIPNLHSIISA----------SDG 333 (515)
Q Consensus 278 ~~gvD~ValSfVrsa~dv~~vr~~l~~~~--------------~~i~IIaKIEt~~aveNldeIl~~----------sDg 333 (515)
...+..+.+|+.++++|+.++..++++.+ ..+.||.-+||.+.+.|.++|+.. .--
T Consensus 119 ~~ai~~~IisMt~s~sdll~V~~l~k~~g~~l~~~e~~~~~~~~~i~vvPLfEt~~dL~~a~~i~~~ll~~~~~~~~~qe 198 (494)
T PRK13655 119 TQPIFEVILPMTTSAEELIEVQRYYEKVVAGVKVKEWIGEFEPKEIEVIPLFEDADALLNADEILEEYLKAKKPHGKYLR 198 (494)
T ss_pred chhhceEEecCCCCHHHHHHHHHHHHHHhHhhccccccCCCCcCCcceECCcCCHHHHHhHHHHHHHHHhchhhcCCeeE
Confidence 34667889999999999999877776554 157899999999999999999975 147
Q ss_pred eEEcCCcccccCCC----CCHHHHHHHHHHHHHhcCCcEEE
Q 010211 334 AMVARGDLGAELPI----EDVPLLQEDIIRRCRSMQKPVIV 370 (515)
Q Consensus 334 ImIgrgDLg~elg~----e~v~~aqk~Ii~~c~~aGKPviv 370 (515)
||+|+.|=+.+-|+ -.+..+|.++.+.|+++|.++..
T Consensus 199 VmlGySDSakd~G~las~w~l~~A~~~L~~~~~~~gv~i~~ 239 (494)
T PRK13655 199 VFLARSDPAMNYGHIASVLSVKYALSRLYELEEELGVEIYP 239 (494)
T ss_pred EEEecccCccchhHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 99999999999997 46888999999999999999865
No 48
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=94.98 E-value=0.18 Score=54.02 Aligned_cols=119 Identities=22% Similarity=0.302 Sum_probs=70.1
Q ss_pred HHhhcchhcCCcEEEec-------ccCCHHHHHHHHHHHHhcCCCceEEE-EecChhhhhcHHHHHhhcCeeEEcCCccc
Q 010211 271 EDIKFGVDNQVDFYAVS-------FVKDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISASDGAMVARGDLG 342 (515)
Q Consensus 271 ~dI~~al~~gvD~ValS-------fVrsa~dv~~vr~~l~~~~~~i~IIa-KIEt~~aveNldeIl~~sDgImIgrgDLg 342 (515)
+..+.+.+.|+|.|.+. |+....+...+.+++++. +++||+ .|-|.+....+-+ .=+|+||+|||--.
T Consensus 146 e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~--~IPVI~G~V~t~e~A~~~~~--aGaDgV~~G~gg~~ 221 (369)
T TIGR01304 146 EIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL--DVPVIAGGVNDYTTALHLMR--TGAAGVIVGPGGAN 221 (369)
T ss_pred HHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC--CCCEEEeCCCCHHHHHHHHH--cCCCEEEECCCCCc
Confidence 44466678999999874 222233456677777654 577887 6666555433322 23999999986422
Q ss_pred cc-----CCCCCHHHHHHHHHHHHH----hcC---CcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 343 AE-----LPIEDVPLLQEDIIRRCR----SMQ---KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 343 ~e-----lg~e~v~~aqk~Ii~~c~----~aG---KPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
.. .+.+ ...+...+.++++ +.| +|||.+. +.-+. .|++.++..|+|++|+-
T Consensus 222 ~~~~~lg~~~p-~~~ai~d~~~a~~~~~~e~g~r~vpVIAdG---------GI~tg---~di~kAlAlGAdaV~iG 284 (369)
T TIGR01304 222 TTRLVLGIEVP-MATAIADVAAARRDYLDETGGRYVHVIADG---------GIETS---GDLVKAIACGADAVVLG 284 (369)
T ss_pred ccccccCCCCC-HHHHHHHHHHHHHHHHHhcCCCCceEEEeC---------CCCCH---HHHHHHHHcCCCEeeeH
Confidence 11 1222 1122223333322 233 8988743 44443 58899999999999985
No 49
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=94.13 E-value=0.99 Score=47.86 Aligned_cols=125 Identities=18% Similarity=0.202 Sum_probs=80.7
Q ss_pred CHhhHHHhhcchh--cCCcEEEec--ccCCHHHHHHHHHHHHhcCCCceEEE-EecChhhhhcHHHHHhhcCeeEEc--C
Q 010211 266 TDKDWEDIKFGVD--NQVDFYAVS--FVKDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISASDGAMVA--R 338 (515)
Q Consensus 266 tekD~~dI~~al~--~gvD~ValS--fVrsa~dv~~vr~~l~~~~~~i~IIa-KIEt~~aveNldeIl~~sDgImIg--r 338 (515)
++.|.+.++.-++ .|+|+|.+- .-.+...+. .-+++++.-.++.||+ -+-|+++.++|-+ +=+|++-|| |
T Consensus 106 ~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~-~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~--aGAD~vKVGIGp 182 (346)
T PRK05096 106 SDADFEKTKQILALSPALNFICIDVANGYSEHFVQ-FVAKAREAWPDKTICAGNVVTGEMVEELIL--SGADIVKVGIGP 182 (346)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHH-HHHHHHHhCCCCcEEEecccCHHHHHHHHH--cCCCEEEEcccC
Confidence 5667777766565 499998763 223333333 3344555445566666 8999999876533 339998866 4
Q ss_pred Ccccc-----cCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 339 GDLGA-----ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 339 gDLg~-----elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
|-... -.|.+ -..+..+..+.+++.|+|+|- ..+..+ --|++.|+..|+|+|||-
T Consensus 183 GSiCtTr~vtGvG~P-QltAV~~~a~~a~~~gvpiIA---------DGGi~~---sGDI~KAlaaGAd~VMlG 242 (346)
T PRK05096 183 GSVCTTRVKTGVGYP-QLSAVIECADAAHGLGGQIVS---------DGGCTV---PGDVAKAFGGGADFVMLG 242 (346)
T ss_pred CccccCccccccChh-HHHHHHHHHHHHHHcCCCEEe---------cCCccc---ccHHHHHHHcCCCEEEeC
Confidence 43221 22334 334556777888999999986 333332 468999999999999983
No 50
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed
Probab=94.11 E-value=0.2 Score=59.35 Aligned_cols=93 Identities=15% Similarity=0.175 Sum_probs=80.2
Q ss_pred cCCcEEEecccCCHHHHHHHHHHHHhcC--------CCceEEEEecChhhhhcHHHHHhh-c---------------Cee
Q 010211 279 NQVDFYAVSFVKDAKVVHELKDYLKSCN--------ADIHVIVKIESADSIPNLHSIISA-S---------------DGA 334 (515)
Q Consensus 279 ~gvD~ValSfVrsa~dv~~vr~~l~~~~--------~~i~IIaKIEt~~aveNldeIl~~-s---------------DgI 334 (515)
..+..+.+|+.++++|+.++..+.++.| ..+.|+.-.||.+.++|.++|++. . --|
T Consensus 485 ~~i~~yIiSmt~~~sdvL~v~~l~k~~gl~~~~~~~~~l~VvPLFEti~dL~~a~~il~~l~~~p~yr~~l~~~~~~qeV 564 (911)
T PRK00009 485 EAIGAYIISMAETVSDVLEVLLLLKEAGLLDPAAARAPLPVVPLFETIEDLRNAADVMRQLLSLPWYRGLIAGRGNLQEV 564 (911)
T ss_pred hhhceEeecCCCCHHHHHHHHHHHHHcCCCccCCCCCCcCeECCcCCHHHHHhHHHHHHHHHcChHHHHHHhcCCCeEEE
Confidence 3566788999999999999988887764 257899999999999999999986 1 269
Q ss_pred EEcCCcccccCCC----CCHHHHHHHHHHHHHhcCCcEEEE
Q 010211 335 MVARGDLGAELPI----EDVPLLQEDIIRRCRSMQKPVIVA 371 (515)
Q Consensus 335 mIgrgDLg~elg~----e~v~~aqk~Ii~~c~~aGKPvivA 371 (515)
|+|..|=+-+-|+ -.+..+|+++.+.|+++|.++...
T Consensus 565 MlGySDS~Kd~G~las~w~l~~Aq~~L~~~~~~~gv~l~~F 605 (911)
T PRK00009 565 MLGYSDSNKDGGFLASNWALYRAQEALVELAEKHGVRLTLF 605 (911)
T ss_pred EeecccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEe
Confidence 9999999999887 478899999999999999998763
No 51
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=94.09 E-value=1 Score=49.26 Aligned_cols=126 Identities=24% Similarity=0.290 Sum_probs=80.6
Q ss_pred CHhhHHHhhcchhcCCcEEEecccC-CHHHHHHHHHHHHhcCCCceEEE-EecChhhhhcHHHHHhhcCeeEEc--CCcc
Q 010211 266 TDKDWEDIKFGVDNQVDFYAVSFVK-DAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISASDGAMVA--RGDL 341 (515)
Q Consensus 266 tekD~~dI~~al~~gvD~ValSfVr-sa~dv~~vr~~l~~~~~~i~IIa-KIEt~~aveNldeIl~~sDgImIg--rgDL 341 (515)
.+.+.+.++..++.|+|+|.+-..+ ....+.+.-+.+++.-.++.|++ -+-|+++..++-+ .=+|+|-|| ||--
T Consensus 222 ~~~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~--aGad~i~vg~g~G~~ 299 (450)
T TIGR01302 222 REFDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALID--AGADGLRVGIGPGSI 299 (450)
T ss_pred chhHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHH--hCCCEEEECCCCCcC
Confidence 4566677777788999999875432 11223332333444334677777 7888877755443 238999866 5521
Q ss_pred cc-----cCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 342 GA-----ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 342 g~-----elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
.. ..|.+.+ .+..++.+.|++.++|+|. ..+.-+ -.|++.|+..|+|++|+-
T Consensus 300 ~~t~~~~~~g~p~~-~~i~~~~~~~~~~~vpvia---------dGGi~~---~~di~kAla~GA~~V~~G 356 (450)
T TIGR01302 300 CTTRIVAGVGVPQI-TAVYDVAEYAAQSGIPVIA---------DGGIRY---SGDIVKALAAGADAVMLG 356 (450)
T ss_pred CccceecCCCccHH-HHHHHHHHHHhhcCCeEEE---------eCCCCC---HHHHHHHHHcCCCEEEEC
Confidence 11 2343433 5667788888999999887 334444 347889999999999984
No 52
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=94.03 E-value=0.11 Score=58.24 Aligned_cols=120 Identities=15% Similarity=0.150 Sum_probs=93.3
Q ss_pred cEEEecccCCHHHHHHHHHHHHhcC-----------CCceEEEEecChhhhhcHHHHHhhcCeeEEcCCccccc-----C
Q 010211 282 DFYAVSFVKDAKVVHELKDYLKSCN-----------ADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAE-----L 345 (515)
Q Consensus 282 D~ValSfVrsa~dv~~vr~~l~~~~-----------~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~e-----l 345 (515)
=-|.+|+|...+++++.++++.+.. ....+=+++|-|..+-.+|+++..+|-+=||-+||..- =
T Consensus 560 L~imLPMVt~v~E~~~Ar~li~ra~~~v~~~~~~~~~~~~iG~MlEvPsll~~L~~L~~~vDFvSVGtNDL~QyllAvDR 639 (756)
T COG3605 560 LRILLPMVTEVDEVDEARRLIERAVREVSEMGGYLPPKPRIGAMLEVPSLLFQLDELAKRVDFVSVGTNDLTQYLLAVDR 639 (756)
T ss_pred ceeeeecccchHHHHHHHHHHHHHHHHHHHhcCCCcCCCCcceeeehhHHHHhHHHHHhhCCEEEecchHHHHHHHHHhc
Confidence 3688999999999999988875432 23567889999999999999999999999999998542 2
Q ss_pred CC-----------CCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCC
Q 010211 346 PI-----------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGK 413 (515)
Q Consensus 346 g~-----------e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~ 413 (515)
|- +.+..+.|+|.++|..+|+||-++.+| .++|--| .-.|..|.+.+-.+ -|++|+
T Consensus 640 ~N~RVad~yD~L~pa~LraLk~I~~a~~~~~~pVtlCGEM------Ag~Pl~A-----~~LigLGfrslSMn-~~~v~~ 706 (756)
T COG3605 640 NNTRVADRYDSLHPAFLRALKQIVRAAERHGTPVTLCGEM------AGDPLSA-----MALIGLGFRSLSMN-PRSVGP 706 (756)
T ss_pred CCchhhhhhcccCHHHHHHHHHHHHHHHhcCCCeeehhhh------cCChHHH-----HHHHhcCcCccccC-cccccc
Confidence 22 357778999999999999999987753 3455433 35677888887665 456664
No 53
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=94.03 E-value=0.78 Score=51.04 Aligned_cols=125 Identities=20% Similarity=0.237 Sum_probs=78.3
Q ss_pred CHhhHHHhhcchhcCCcEEEeccc--CCHHHHHHHHHHHHhcCCCceEEEE-ecChhhhhcHHHHHhhcCeeEEc--CCc
Q 010211 266 TDKDWEDIKFGVDNQVDFYAVSFV--KDAKVVHELKDYLKSCNADIHVIVK-IESADSIPNLHSIISASDGAMVA--RGD 340 (515)
Q Consensus 266 tekD~~dI~~al~~gvD~ValSfV--rsa~dv~~vr~~l~~~~~~i~IIaK-IEt~~aveNldeIl~~sDgImIg--rgD 340 (515)
.+.+.+.++..++.|+|+|++--- .+...+ +.-+.+++.-.+..||++ |-|.+...++.+ .=+|+|.+| +|=
T Consensus 246 ~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~-~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~--aGaD~i~vg~g~G~ 322 (505)
T PLN02274 246 RESDKERLEHLVKAGVDVVVLDSSQGDSIYQL-EMIKYIKKTYPELDVIGGNVVTMYQAQNLIQ--AGVDGLRVGMGSGS 322 (505)
T ss_pred CccHHHHHHHHHHcCCCEEEEeCCCCCcHHHH-HHHHHHHHhCCCCcEEEecCCCHHHHHHHHH--cCcCEEEECCCCCc
Confidence 345667777778899999987432 222222 222334444446778774 999888766544 239999886 442
Q ss_pred cccc-----CCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 341 LGAE-----LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 341 Lg~e-----lg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
-+.. .|.+.+ .+...+-+.+++.++|||.. .+.-+ -.|++.|+..|+|++|+-
T Consensus 323 ~~~t~~~~~~g~~~~-~~i~~~~~~~~~~~vpVIad---------GGI~~---~~di~kAla~GA~~V~vG 380 (505)
T PLN02274 323 ICTTQEVCAVGRGQA-TAVYKVASIAAQHGVPVIAD---------GGISN---SGHIVKALTLGASTVMMG 380 (505)
T ss_pred cccCccccccCCCcc-cHHHHHHHHHHhcCCeEEEe---------CCCCC---HHHHHHHHHcCCCEEEEc
Confidence 1111 232332 23344666677789999984 34433 357889999999999973
No 54
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=93.93 E-value=1.3 Score=46.89 Aligned_cols=125 Identities=18% Similarity=0.210 Sum_probs=79.9
Q ss_pred CHhhHHHhhcchhc--CCcEEEec--ccCCHHHHHHHHHHHHhcCCCceEEEE-ecChhhhhcHHHHHhhcCeeEEc--C
Q 010211 266 TDKDWEDIKFGVDN--QVDFYAVS--FVKDAKVVHELKDYLKSCNADIHVIVK-IESADSIPNLHSIISASDGAMVA--R 338 (515)
Q Consensus 266 tekD~~dI~~al~~--gvD~ValS--fVrsa~dv~~vr~~l~~~~~~i~IIaK-IEt~~aveNldeIl~~sDgImIg--r 338 (515)
++.|.+.++.-++. ++|+|.+- .-.+...+.. -+++++.-.+..||+= |-|+++.+++-+ .=+|+|.|| |
T Consensus 105 ~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~-ik~ir~~~p~~~viaGNV~T~e~a~~Li~--aGAD~ikVgiGp 181 (343)
T TIGR01305 105 SDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEF-VKLVREAFPEHTIMAGNVVTGEMVEELIL--SGADIVKVGIGP 181 (343)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHH-HHHHHhhCCCCeEEEecccCHHHHHHHHH--cCCCEEEEcccC
Confidence 56677777766666 59998763 2223222222 3445544456788887 999999865432 349999987 4
Q ss_pred Cccccc-----CCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 339 GDLGAE-----LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 339 gDLg~e-----lg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
|--... .|.+ -..+..++.++++..++|+|. ..+... -.|++.|+..|+|++|+-
T Consensus 182 GSicttR~~~Gvg~p-qltAv~~~a~aa~~~~v~VIa---------DGGIr~---~gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 182 GSVCTTRTKTGVGYP-QLSAVIECADAAHGLKGHIIS---------DGGCTC---PGDVAKAFGAGADFVMLG 241 (343)
T ss_pred CCcccCceeCCCCcC-HHHHHHHHHHHhccCCCeEEE---------cCCcCc---hhHHHHHHHcCCCEEEEC
Confidence 422111 1212 334556677777777889887 333332 468999999999999984
No 55
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.57 E-value=1.1 Score=49.73 Aligned_cols=127 Identities=16% Similarity=0.189 Sum_probs=84.5
Q ss_pred CCHhhHHHhhcchhcCCcEEEecccCC-HHHHHHHHHHHHhcCCCceEEE-EecChhhhhcHHHHHhhcCeeEEc--CCc
Q 010211 265 ITDKDWEDIKFGVDNQVDFYAVSFVKD-AKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISASDGAMVA--RGD 340 (515)
Q Consensus 265 ltekD~~dI~~al~~gvD~ValSfVrs-a~dv~~vr~~l~~~~~~i~IIa-KIEt~~aveNldeIl~~sDgImIg--rgD 340 (515)
+++++.+.++.-++.|+|.|++--.+. ...+.+.-+.+++.-.++.||+ -|-|.++..++.+ .=+|+|=|| +|-
T Consensus 224 ~~~~~~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~--aGad~v~vgig~gs 301 (479)
T PRK07807 224 INGDVAAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVE--AGADIVKVGVGPGA 301 (479)
T ss_pred cChhHHHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHH--cCCCEEEECccCCc
Confidence 355566666767788999988742211 2334444455666556789999 9999999987765 238998855 443
Q ss_pred ccccCCCC----CHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEee
Q 010211 341 LGAELPIE----DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 405 (515)
Q Consensus 341 Lg~elg~e----~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmL 405 (515)
....-++- .-..+..++.++|++.|+|||. ..+..+. .|++.++..|+|++|+
T Consensus 302 ictt~~~~~~~~p~~~av~~~~~~~~~~~~~via---------~ggi~~~---~~~~~al~~ga~~v~~ 358 (479)
T PRK07807 302 MCTTRMMTGVGRPQFSAVLECAAAARELGAHVWA---------DGGVRHP---RDVALALAAGASNVMI 358 (479)
T ss_pred ccccccccCCchhHHHHHHHHHHHHHhcCCcEEe---------cCCCCCH---HHHHHHHHcCCCeeec
Confidence 33322221 1233456677777788999997 3445443 5788999999999997
No 56
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=93.56 E-value=1.6 Score=43.38 Aligned_cols=138 Identities=9% Similarity=0.036 Sum_probs=90.9
Q ss_pred HHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCC---
Q 010211 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPI--- 347 (515)
Q Consensus 271 ~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~--- 347 (515)
..+..-.+.|+|+|.+- ++...++.+.-+++++.|.+..+..+=+| -++.++.++..+|.+++ ++++-|+
T Consensus 72 ~~i~~~~~~gad~i~~H-~Ea~~~~~~~l~~ik~~g~k~GlalnP~T--p~~~i~~~l~~~D~vlv----MtV~PGfgGq 144 (220)
T PRK08883 72 RIIPDFAKAGASMITFH-VEASEHVDRTLQLIKEHGCQAGVVLNPAT--PLHHLEYIMDKVDLILL----MSVNPGFGGQ 144 (220)
T ss_pred HHHHHHHHhCCCEEEEc-ccCcccHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHHhCCeEEE----EEecCCCCCc
Confidence 44555557899999874 67767787777889999999999888888 57789999999999998 4444443
Q ss_pred ---CCHHHHHHHHHHHHHhcC--CcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHH
Q 010211 348 ---EDVPLLQEDIIRRCRSMQ--KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVM 422 (515)
Q Consensus 348 ---e~v~~aqk~Ii~~c~~aG--KPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m 422 (515)
+....-.+++-+...++| .|+.+. +--+.. .+...+..|+|++...+.--..+-|.++++.+
T Consensus 145 ~fi~~~lekI~~l~~~~~~~~~~~~I~vd----------GGI~~e---ni~~l~~aGAd~vVvGSaIf~~~d~~~~i~~l 211 (220)
T PRK08883 145 SFIPHTLDKLRAVRKMIDESGRDIRLEID----------GGVKVD---NIREIAEAGADMFVAGSAIFGQPDYKAVIDEM 211 (220)
T ss_pred eecHhHHHHHHHHHHHHHhcCCCeeEEEE----------CCCCHH---HHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHH
Confidence 222223333333333344 555442 122222 34466788999998764433345688999988
Q ss_pred HHHHHH
Q 010211 423 HTVALR 428 (515)
Q Consensus 423 ~~I~~~ 428 (515)
++...+
T Consensus 212 ~~~~~~ 217 (220)
T PRK08883 212 RAELAK 217 (220)
T ss_pred HHHHHh
Confidence 876543
No 57
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=93.53 E-value=0.48 Score=55.00 Aligned_cols=112 Identities=21% Similarity=0.134 Sum_probs=89.3
Q ss_pred EEEecccCCHHHHHHHHHHHH---hcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccC-CC-----------
Q 010211 283 FYAVSFVKDAKVVHELKDYLK---SCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAEL-PI----------- 347 (515)
Q Consensus 283 ~ValSfVrsa~dv~~vr~~l~---~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~el-g~----------- 347 (515)
.+.++|+++........ ... ..+++..+..+||.+.++-..|||++..|++=+|.+||..-. |+
T Consensus 597 ~~mip~~~~~~e~~~~~-~~~~~~~~~~~~~~~~m~e~P~~~~~~~e~~~~~d~~S~gtndltq~tlg~~rd~~~~~~~~ 675 (740)
T COG0574 597 EIMIPFVRTEEEREKVI-ILEEGLKRGKNYKVGQMIELPSAALLADEIAEYFDGFSIGSNDLTQLTLGLDRDSELFDERD 675 (740)
T ss_pred EEEccccccHHHHHHHH-HHhhhhcccceEEEEEEeecchHHhhhHhHHhhcccceecccccccceeeeecccccccccc
Confidence 46778999988887766 333 112238899999999999999999999999999999986532 22
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 348 EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 348 e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
+.|-.+.+..+..|+.+++.+++++| ....|.-|+ -++..|.|+|..+
T Consensus 676 ~~v~~li~~a~~~~~~~~~~~~icG~------~~~~p~~a~-----~~~e~Gi~~Vs~n 723 (740)
T COG0574 676 PAVLKLIIIAIKAADSGGLLVGICGQ------APSDPHGAI-----FLVELGIDSVSLN 723 (740)
T ss_pred ccHHHHHHHHHhcccccCcEEEEecc------CCCCcHHHH-----HHHHcCCCeEecC
Confidence 57888999999999999999999987 333465555 6788999999966
No 58
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=93.28 E-value=1.6 Score=42.90 Aligned_cols=71 Identities=17% Similarity=0.331 Sum_probs=45.8
Q ss_pred CHhhHHH-hhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEE----EecCh-hhhhcHHHHHhh-cCeeEEcC
Q 010211 266 TDKDWED-IKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIV----KIESA-DSIPNLHSIISA-SDGAMVAR 338 (515)
Q Consensus 266 tekD~~d-I~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIa----KIEt~-~aveNldeIl~~-sDgImIgr 338 (515)
+.++++. .+.+.+.|+|||.++|... +..+++..+.. .+++++ ++.|. +.++|+++.++. ++|+.+||
T Consensus 141 ~~~~i~~~~~~a~~~GaD~Ik~~~~~~---~~~~~~i~~~~--~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~ 215 (235)
T cd00958 141 DPDLIAYAARIGAELGADIVKTKYTGD---AESFKEVVEGC--PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGR 215 (235)
T ss_pred CHHHHHHHHHHHHHHCCCEEEecCCCC---HHHHHHHHhcC--CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEech
Confidence 4455554 5667889999999988654 44444444332 244432 22232 256888998888 99999998
Q ss_pred Ccc
Q 010211 339 GDL 341 (515)
Q Consensus 339 gDL 341 (515)
.=+
T Consensus 216 ~i~ 218 (235)
T cd00958 216 NIF 218 (235)
T ss_pred hhh
Confidence 755
No 59
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.05 E-value=1.8 Score=46.99 Aligned_cols=125 Identities=20% Similarity=0.264 Sum_probs=77.5
Q ss_pred CHhhHHHhhcchhcCCcEEEe--cccCCHHHHHHHHHHHHhcCCCceEEE-EecChhhhhcHHHHHhhcCeeEEcCCccc
Q 010211 266 TDKDWEDIKFGVDNQVDFYAV--SFVKDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISASDGAMVARGDLG 342 (515)
Q Consensus 266 tekD~~dI~~al~~gvD~Val--SfVrsa~dv~~vr~~l~~~~~~i~IIa-KIEt~~aveNldeIl~~sDgImIgrgDLg 342 (515)
++.+.+.++..++.|+|+|++ +.-. .+.+.+.-+.+++.-.+..+|+ -|-|.++..++.+ .=+|+|.+|=|-=+
T Consensus 151 ~~~~~~~v~~lv~aGvDvI~iD~a~g~-~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~--aGaD~I~vG~g~Gs 227 (404)
T PRK06843 151 DIDTIERVEELVKAHVDILVIDSAHGH-STRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLIS--VGADCLKVGIGPGS 227 (404)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCC-ChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHH--cCCCEEEECCCCCc
Confidence 345667777778899999984 3322 2334344444554434555544 7888888766554 23899998743311
Q ss_pred c-------cCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 343 A-------ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 343 ~-------elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
+ ..|.+.+ .+...+.+.+++.+.|||. ..+.-+ -.|++.++..|+|+||+-
T Consensus 228 ~c~tr~~~g~g~p~l-tai~~v~~~~~~~~vpVIA---------dGGI~~---~~Di~KALalGA~aVmvG 285 (404)
T PRK06843 228 ICTTRIVAGVGVPQI-TAICDVYEVCKNTNICIIA---------DGGIRF---SGDVVKAIAAGADSVMIG 285 (404)
T ss_pred CCcceeecCCCCChH-HHHHHHHHHHhhcCCeEEE---------eCCCCC---HHHHHHHHHcCCCEEEEc
Confidence 1 1233332 2334445566778999887 334444 347889999999999973
No 60
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=92.70 E-value=3.6 Score=41.09 Aligned_cols=140 Identities=11% Similarity=0.109 Sum_probs=90.9
Q ss_pred HHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCC---
Q 010211 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPI--- 347 (515)
Q Consensus 271 ~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~--- 347 (515)
..+..-.+.|+|+|.+- +++..+..+.-+++++.|.+..+..+-+| -++.++.++..+|.|+| ++++-|+
T Consensus 76 ~~i~~~~~~gad~I~~H-~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T--~~~~i~~~l~~vD~Vlv----MtV~PGf~GQ 148 (223)
T PRK08745 76 RIVPDFADAGATTISFH-PEASRHVHRTIQLIKSHGCQAGLVLNPAT--PVDILDWVLPELDLVLV----MSVNPGFGGQ 148 (223)
T ss_pred HHHHHHHHhCCCEEEEc-ccCcccHHHHHHHHHHCCCceeEEeCCCC--CHHHHHHHHhhcCEEEE----EEECCCCCCc
Confidence 34444457899999874 56656777777889999999999999888 47789999999999998 4555554
Q ss_pred ---CCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHHH
Q 010211 348 ---EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHT 424 (515)
Q Consensus 348 ---e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~ 424 (515)
+....-.+++-+...+.+..+-+. .-+--+.. .+......|+|.+++-+---...-|.++++.|++
T Consensus 149 ~fi~~~l~KI~~l~~~~~~~~~~~~Ie--------VDGGI~~e---ti~~l~~aGaDi~V~GSaiF~~~d~~~~~~~lr~ 217 (223)
T PRK08745 149 AFIPSALDKLRAIRKKIDALGKPIRLE--------IDGGVKAD---NIGAIAAAGADTFVAGSAIFNAPDYAQVIAQMRA 217 (223)
T ss_pred cccHHHHHHHHHHHHHHHhcCCCeeEE--------EECCCCHH---HHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHH
Confidence 233333333334444556554332 11222322 2335677899998875322223458999999987
Q ss_pred HHHH
Q 010211 425 VALR 428 (515)
Q Consensus 425 I~~~ 428 (515)
...+
T Consensus 218 ~~~~ 221 (223)
T PRK08745 218 AVAA 221 (223)
T ss_pred HHHh
Confidence 7544
No 61
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=92.59 E-value=2 Score=44.70 Aligned_cols=113 Identities=19% Similarity=0.210 Sum_probs=68.6
Q ss_pred HHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCC
Q 010211 270 WEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIE 348 (515)
Q Consensus 270 ~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e 348 (515)
.+.++..++.|+++|.++|-...+.+ +.++.. .+.+++.+=|.+ ......+. +|+|.+--.+-+-..|..
T Consensus 77 ~~~~~~~~~~~v~~v~~~~g~p~~~i----~~lk~~--g~~v~~~v~s~~---~a~~a~~~GaD~Ivv~g~eagGh~g~~ 147 (307)
T TIGR03151 77 DELVDLVIEEKVPVVTTGAGNPGKYI----PRLKEN--GVKVIPVVASVA---LAKRMEKAGADAVIAEGMESGGHIGEL 147 (307)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcHHHH----HHHHHc--CCEEEEEcCCHH---HHHHHHHcCCCEEEEECcccCCCCCCC
Confidence 45567778899999998875443333 334333 477888886643 33344344 899987332444443322
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 349 DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 349 ~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
.-....+++.+ ..++|++.+. +.-+ -.+++.++..|+|++++.
T Consensus 148 ~~~~ll~~v~~---~~~iPviaaG---------GI~~---~~~~~~al~~GA~gV~iG 190 (307)
T TIGR03151 148 TTMALVPQVVD---AVSIPVIAAG---------GIAD---GRGMAAAFALGAEAVQMG 190 (307)
T ss_pred cHHHHHHHHHH---HhCCCEEEEC---------CCCC---HHHHHHHHHcCCCEeecc
Confidence 23444455543 3479999854 3333 335677888999999974
No 62
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=92.45 E-value=1.6 Score=48.53 Aligned_cols=122 Identities=14% Similarity=0.108 Sum_probs=69.9
Q ss_pred HHHhhcchhcCCcEEEecccCCHHH--HHHHHHHHHhcCCCceEEE-EecChhhhhcHHHHHhhcCeeEEcCCccc----
Q 010211 270 WEDIKFGVDNQVDFYAVSFVKDAKV--VHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISASDGAMVARGDLG---- 342 (515)
Q Consensus 270 ~~dI~~al~~gvD~ValSfVrsa~d--v~~vr~~l~~~~~~i~IIa-KIEt~~aveNldeIl~~sDgImIgrgDLg---- 342 (515)
.+.++..++.|+|.|.+.-.+-..+ +..++.+-+..+.++.|++ -|.|+++.+.+-+ +=+|+|.||-|-=+
T Consensus 244 ~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~--aGAd~I~vg~g~Gs~c~t 321 (502)
T PRK07107 244 AERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAE--AGADFVKVGIGGGSICIT 321 (502)
T ss_pred HHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHH--cCCCEEEECCCCCcCccc
Confidence 4555556788999998752222111 2223332222333466666 7889888755432 23899999644221
Q ss_pred ---ccCCCCCHHHHHHHHHHHHHh----cC--CcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 343 ---AELPIEDVPLLQEDIIRRCRS----MQ--KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 343 ---~elg~e~v~~aqk~Ii~~c~~----aG--KPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
...|.+.+ .+..++.+++++ .| +|+|. ..+... -.|++.|+..|+|++|+-
T Consensus 322 r~~~~~g~~~~-~ai~~~~~a~~~~~~~~g~~~~via---------dgGir~---~gdi~KAla~GA~~vm~G 381 (502)
T PRK07107 322 REQKGIGRGQA-TALIEVAKARDEYFEETGVYIPICS---------DGGIVY---DYHMTLALAMGADFIMLG 381 (502)
T ss_pred ccccCCCccHH-HHHHHHHHHHHHHHhhcCCcceEEE---------cCCCCc---hhHHHHHHHcCCCeeeeC
Confidence 12232322 233344444433 47 78876 344433 468999999999999973
No 63
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=92.42 E-value=2.4 Score=42.18 Aligned_cols=138 Identities=11% Similarity=0.137 Sum_probs=84.9
Q ss_pred HHhhcchhcCCcEEEecccCCHHH-HHHHHHHHHhcCCCceEEEEecChhhhhcHHHHH--hhcCeeEEcCCcccccCCC
Q 010211 271 EDIKFGVDNQVDFYAVSFVKDAKV-VHELKDYLKSCNADIHVIVKIESADSIPNLHSII--SASDGAMVARGDLGAELPI 347 (515)
Q Consensus 271 ~dI~~al~~gvD~ValSfVrsa~d-v~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl--~~sDgImIgrgDLg~elg~ 347 (515)
..++...+.|+|++.+-+ +...+ +.+..+.+++.|..+.|-..-+| .++.+.+++ ...|.|++ ++++-|.
T Consensus 79 ~~i~~~~~~Gad~itvH~-ea~~~~~~~~l~~ik~~G~~~gval~p~t--~~e~l~~~l~~~~vD~Vl~----m~v~pG~ 151 (228)
T PTZ00170 79 KWVDDFAKAGASQFTFHI-EATEDDPKAVARKIREAGMKVGVAIKPKT--PVEVLFPLIDTDLVDMVLV----MTVEPGF 151 (228)
T ss_pred HHHHHHHHcCCCEEEEec-cCCchHHHHHHHHHHHCCCeEEEEECCCC--CHHHHHHHHccchhhhHHh----hhcccCC
Confidence 344556678999998754 44444 66777777777876665555444 689999998 66898886 7777666
Q ss_pred CC---HHHHHHHHHHHHHhcCC-cEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHH
Q 010211 348 ED---VPLLQEDIIRRCRSMQK-PVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMH 423 (515)
Q Consensus 348 e~---v~~aqk~Ii~~c~~aGK-PvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~ 423 (515)
.. .+....++-+..+..+. .+.+ .+--+.. .+..++..|+|.+.+-+--.....|.++++.+.
T Consensus 152 ~gq~~~~~~~~ki~~~~~~~~~~~I~V----------dGGI~~~---ti~~~~~aGad~iVvGsaI~~a~d~~~~~~~i~ 218 (228)
T PTZ00170 152 GGQSFMHDMMPKVRELRKRYPHLNIQV----------DGGINLE---TIDIAADAGANVIVAGSSIFKAKDRKQAIELLR 218 (228)
T ss_pred CCcEecHHHHHHHHHHHHhcccCeEEE----------CCCCCHH---HHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHH
Confidence 32 22233333333332222 2222 1222222 344678889999988644333456999998888
Q ss_pred HHHHH
Q 010211 424 TVALR 428 (515)
Q Consensus 424 ~I~~~ 428 (515)
+...+
T Consensus 219 ~~~~~ 223 (228)
T PTZ00170 219 ESVQK 223 (228)
T ss_pred HHHHH
Confidence 76554
No 64
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=91.69 E-value=12 Score=38.01 Aligned_cols=157 Identities=10% Similarity=0.111 Sum_probs=98.6
Q ss_pred eeeeCCCccCCCCCCHhhHHHhhcch-hcCCcEEEecccCCHHH----------HHHHHHHHHhcCCCceEEEEecChhh
Q 010211 252 HLNVRGKSANLPSITDKDWEDIKFGV-DNQVDFYAVSFVKDAKV----------VHELKDYLKSCNADIHVIVKIESADS 320 (515)
Q Consensus 252 gVnlpg~~~~lp~ltekD~~dI~~al-~~gvD~ValSfVrsa~d----------v~~vr~~l~~~~~~i~IIaKIEt~~a 320 (515)
|-..||..+ |..++..|...+ +.|+|+|=+.|....++ ...++........+..+.+.+-....
T Consensus 9 G~q~~~~~f-----~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 83 (266)
T cd07944 9 GGYVNNWDF-----GDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGND 83 (266)
T ss_pred CccccCccC-----CHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCC
Confidence 335566653 667777775554 57999998887654321 34455544432236777777766542
Q ss_pred hhcHHHHHhh----cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHH-H
Q 010211 321 IPNLHSIISA----SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAI-A 395 (515)
Q Consensus 321 veNldeIl~~----sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~Dvan-a 395 (515)
++++|... .|.|-|+ .+.. .....+++++.++++|..|.+. +.. ...-+..++.+.+. +
T Consensus 84 --~~~~l~~a~~~gv~~iri~-------~~~~-~~~~~~~~i~~ak~~G~~v~~~--~~~----a~~~~~~~~~~~~~~~ 147 (266)
T cd07944 84 --DIDLLEPASGSVVDMIRVA-------FHKH-EFDEALPLIKAIKEKGYEVFFN--LMA----ISGYSDEELLELLELV 147 (266)
T ss_pred --CHHHHHHHhcCCcCEEEEe-------cccc-cHHHHHHHHHHHHHCCCeEEEE--EEe----ecCCCHHHHHHHHHHH
Confidence 23444432 5776664 2333 3455577889999999887653 222 22344555666554 4
Q ss_pred HHhCCcEEeecccccCCCCHHHHHHHHHHHHHHHh
Q 010211 396 VREGADAVMLSGETAHGKFPLKAVKVMHTVALRTE 430 (515)
Q Consensus 396 V~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE 430 (515)
...|+|.+.|. +|.=..+|.+.-+.+..+.....
T Consensus 148 ~~~g~~~i~l~-DT~G~~~P~~v~~lv~~l~~~~~ 181 (266)
T cd07944 148 NEIKPDVFYIV-DSFGSMYPEDIKRIISLLRSNLD 181 (266)
T ss_pred HhCCCCEEEEe-cCCCCCCHHHHHHHHHHHHHhcC
Confidence 55699999985 88888999998888888876554
No 65
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional
Probab=91.67 E-value=0.74 Score=54.98 Aligned_cols=143 Identities=15% Similarity=0.145 Sum_probs=98.8
Q ss_pred CcEEEecccCCHHHHHHHHHHHHhcC-----CCceEEEEecChhhhhcHHHHHhh-c----------------CeeEEcC
Q 010211 281 VDFYAVSFVKDAKVVHELKDYLKSCN-----ADIHVIVKIESADSIPNLHSIISA-S----------------DGAMVAR 338 (515)
Q Consensus 281 vD~ValSfVrsa~dv~~vr~~l~~~~-----~~i~IIaKIEt~~aveNldeIl~~-s----------------DgImIgr 338 (515)
+..+.+|+.++++|+..+.-+.++.+ ..+.|+.-.||.+.++|.++|++. . --||+|.
T Consensus 546 lg~yIISmt~~~sdiL~V~~l~k~~g~~~~~~~l~VvPLFETi~dL~~a~~il~~ll~~p~Yr~~l~~~~~~~qeVMlGY 625 (974)
T PTZ00398 546 LGAYIISMCRNPSDILLVHVFQKEILKSGASKRQRVVPLLETIESLNSSSKTLEELFSNPWYLKHLKTVDNGIQEIMIGY 625 (974)
T ss_pred cceeeeCCCCCHHHHHHHHHHHHHhCCcCCCCCcCeeCCcCCHHHHHhHHHHHHHHHcCHHHHHHHhhccCCeEEEEEec
Confidence 33467899999999999888877643 247899999999999999999986 1 2699999
Q ss_pred CcccccCCC----CCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHH-hHHHHHHHhCCcEEeecccccCCC
Q 010211 339 GDLGAELPI----EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEV-SDIAIAVREGADAVMLSGETAHGK 413 (515)
Q Consensus 339 gDLg~elg~----e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv-~DvanaV~~G~D~vmLs~ETa~G~ 413 (515)
.|=+.+-|+ -.+..+|.++.+.|+++|+.+...=..=.|+-..+-|+...+ +.-.. ...|.=-+-..||+-.-+
T Consensus 626 SDS~Kd~G~laa~w~l~~Aq~~L~~~~~~~gV~l~~FhGrGGsvgRGGgp~~~aIlsqp~~-~~~g~ir~TeQGE~i~~k 704 (974)
T PTZ00398 626 SDSGKDGGRLTSAWELYKAQERLSNIARQYGVEIRFFHGRGGSVSRGGGPQHLAILSQPPN-TIKSYLRITIQGETITQN 704 (974)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCCCCCCCCChHHHHhcCCCc-cccCeeEEeeechhhHHh
Confidence 999999887 478899999999999999998764333333334445544321 11111 112332334456666556
Q ss_pred CHHH--HHHHHHH
Q 010211 414 FPLK--AVKVMHT 424 (515)
Q Consensus 414 yPve--aV~~m~~ 424 (515)
|+.. |.+.+..
T Consensus 705 y~~~~~a~~~le~ 717 (974)
T PTZ00398 705 FGLKGICLRTWEL 717 (974)
T ss_pred cCChHHHHHHHHH
Confidence 6544 4444544
No 66
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=91.52 E-value=4.1 Score=39.80 Aligned_cols=131 Identities=18% Similarity=0.200 Sum_probs=71.9
Q ss_pred HHHhhcchhcCCcEEEec--ccCCH--HHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh----cCeeEEcCCcc
Q 010211 270 WEDIKFGVDNQVDFYAVS--FVKDA--KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDL 341 (515)
Q Consensus 270 ~~dI~~al~~gvD~ValS--fVrsa--~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~----sDgImIgrgDL 341 (515)
.+.++.+.+.|+|+|.+. ...++ +.+.++.+.+++. ..+.+++-+-| .+++... +|.+.+..+++
T Consensus 78 ~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi~~v~t------~ee~~~a~~~G~d~i~~~~~g~ 150 (221)
T PRK01130 78 LKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY-PGQLLMADCST------LEEGLAAQKLGFDFIGTTLSGY 150 (221)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEEEeCCC------HHHHHHHHHcCCCEEEcCCcee
Confidence 345677778899977653 22222 5555666666553 56677765443 3444333 78887765544
Q ss_pred cccC--CCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHH
Q 010211 342 GAEL--PIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAV 419 (515)
Q Consensus 342 g~el--g~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV 419 (515)
...- ....-....+++.+ ..++|++.+ .+.-+. .++..++..|+|++++.+. +-+ |-+..
T Consensus 151 t~~~~~~~~~~~~~i~~i~~---~~~iPvia~---------GGI~t~---~~~~~~l~~GadgV~iGsa--i~~-~~~~~ 212 (221)
T PRK01130 151 TEETKKPEEPDFALLKELLK---AVGCPVIAE---------GRINTP---EQAKKALELGAHAVVVGGA--ITR-PEEIT 212 (221)
T ss_pred ecCCCCCCCcCHHHHHHHHH---hCCCCEEEE---------CCCCCH---HHHHHHHHCCCCEEEEchH--hcC-CHHHH
Confidence 3221 11111233333333 337999884 344333 3455778889999998733 322 44555
Q ss_pred HHHHHH
Q 010211 420 KVMHTV 425 (515)
Q Consensus 420 ~~m~~I 425 (515)
+.+.+.
T Consensus 213 ~~~~~~ 218 (221)
T PRK01130 213 KWFVDA 218 (221)
T ss_pred HHHHHH
Confidence 555443
No 67
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=91.48 E-value=3.9 Score=43.21 Aligned_cols=125 Identities=18% Similarity=0.295 Sum_probs=72.6
Q ss_pred CHhhHHHhhcchhcCC--cEEEecccC-CHHHHHHHHHHHHhcCCCceEEEE-ecChhhhhcHHHHHhhcCeeEEcCCcc
Q 010211 266 TDKDWEDIKFGVDNQV--DFYAVSFVK-DAKVVHELKDYLKSCNADIHVIVK-IESADSIPNLHSIISASDGAMVARGDL 341 (515)
Q Consensus 266 tekD~~dI~~al~~gv--D~ValSfVr-sa~dv~~vr~~l~~~~~~i~IIaK-IEt~~aveNldeIl~~sDgImIgrgDL 341 (515)
++++.+.+..-++.|+ |.|++--.. ..+.+.++-+.+++.-.++.||++ |-|.+...++.+ .=+|++.+|=+.=
T Consensus 95 ~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~--aGad~i~vg~~~G 172 (326)
T PRK05458 95 KDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELEN--AGADATKVGIGPG 172 (326)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHH--cCcCEEEECCCCC
Confidence 4566666666677754 999872111 122333444445555556889996 999888766544 2389999872211
Q ss_pred c-------ccCCCCCHHH-HHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecc
Q 010211 342 G-------AELPIEDVPL-LQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG 407 (515)
Q Consensus 342 g-------~elg~e~v~~-aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ 407 (515)
+ ...+.+.+.. +.+.+. +...+|+|. ..+.-+. .|++.++..|+|++|+.+
T Consensus 173 ~~~~t~~~~g~~~~~w~l~ai~~~~---~~~~ipVIA---------dGGI~~~---~Di~KaLa~GA~aV~vG~ 231 (326)
T PRK05458 173 KVCITKIKTGFGTGGWQLAALRWCA---KAARKPIIA---------DGGIRTH---GDIAKSIRFGATMVMIGS 231 (326)
T ss_pred cccccccccCCCCCccHHHHHHHHH---HHcCCCEEE---------eCCCCCH---HHHHHHHHhCCCEEEech
Confidence 1 1112232211 222222 334688776 3455443 478899999999999753
No 68
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=91.38 E-value=3.3 Score=39.40 Aligned_cols=135 Identities=13% Similarity=0.084 Sum_probs=75.8
Q ss_pred HhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCC-C-CC
Q 010211 272 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELP-I-ED 349 (515)
Q Consensus 272 dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg-~-e~ 349 (515)
.++.+.+.|+|+|.+.--.+ ++..+..+.+...+ +.+..-+......+.+.++...+|.+.++..+-|..=. + +.
T Consensus 72 ~~~~~~~~g~dgv~vh~~~~-~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g~tg~~~~~~ 148 (211)
T cd00429 72 YIEAFAKAGADIITFHAEAT-DHLHRTIQLIKELG--MKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGFGGQKFIPE 148 (211)
T ss_pred HHHHHHHcCCCEEEECccch-hhHHHHHHHHHHCC--CeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCCCCCcccCHH
Confidence 46666789999987765544 33333344444434 34444443323466677777778999887544332211 1 11
Q ss_pred HHHHHHHHHHHHH--hcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHH
Q 010211 350 VPLLQEDIIRRCR--SMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVM 422 (515)
Q Consensus 350 v~~aqk~Ii~~c~--~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m 422 (515)
.....+++-+... ....|+.++ ..-.| .++..++..|+|++...+.-..-+.|.++++.+
T Consensus 149 ~~~~i~~~~~~~~~~~~~~pi~v~--------GGI~~-----env~~~~~~gad~iivgsai~~~~~~~~~~~~~ 210 (211)
T cd00429 149 VLEKIRKLRELIPENNLNLLIEVD--------GGINL-----ETIPLLAEAGADVLVAGSALFGSDDYAEAIKEL 210 (211)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEE--------CCCCH-----HHHHHHHHcCCCEEEECHHHhCCCCHHHHHHHh
Confidence 1112222222221 224787664 22222 345677889999999987766667788877754
No 69
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=91.33 E-value=12 Score=36.89 Aligned_cols=158 Identities=12% Similarity=0.054 Sum_probs=98.9
Q ss_pred CCHhhHHH-hhcchhcCCcEEEecccCCH------HHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEE
Q 010211 265 ITDKDWED-IKFGVDNQVDFYAVSFVKDA------KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMV 336 (515)
Q Consensus 265 ltekD~~d-I~~al~~gvD~ValSfVrsa------~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImI 336 (515)
++.+++.. ++...+.|+|+|-+.+-... ++..++-+++.+.+.+..+.+.+=+ +.+.++...+. .|.|.+
T Consensus 16 ~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~--~~~~i~~a~~~g~~~i~i 93 (265)
T cd03174 16 FSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRN--REKGIERALEAGVDEVRI 93 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccC--chhhHHHHHhCCcCEEEE
Confidence 45566544 45556789999999887776 6666655666665555565555533 24445555555 566655
Q ss_pred cCCccc---c----cCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHH-HHHhCCcEEeeccc
Q 010211 337 ARGDLG---A----ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAVMLSGE 408 (515)
Q Consensus 337 grgDLg---~----elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~Dvan-aV~~G~D~vmLs~E 408 (515)
. .+.+ . ..+.+.........++.++++|..+.+.+. .+..+.-+..++.+.+. +...|+|.+.|. +
T Consensus 94 ~-~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~----~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~-D 167 (265)
T cd03174 94 F-DSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLE----DAFGCKTDPEYVLEVAKALEEAGADEISLK-D 167 (265)
T ss_pred E-EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE----eecCCCCCHHHHHHHHHHHHHcCCCEEEec-h
Confidence 4 1111 0 022234566677888899999999887541 11111134445555544 566799999985 7
Q ss_pred ccCCCCHHHHHHHHHHHHHHHh
Q 010211 409 TAHGKFPLKAVKVMHTVALRTE 430 (515)
Q Consensus 409 Ta~G~yPveaV~~m~~I~~~aE 430 (515)
|.=..+|-+.-+.++.+.....
T Consensus 168 t~G~~~P~~v~~li~~l~~~~~ 189 (265)
T cd03174 168 TVGLATPEEVAELVKALREALP 189 (265)
T ss_pred hcCCcCHHHHHHHHHHHHHhCC
Confidence 7767889888888888776655
No 70
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=91.21 E-value=4.3 Score=39.67 Aligned_cols=114 Identities=25% Similarity=0.294 Sum_probs=64.6
Q ss_pred HHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCC
Q 010211 270 WEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIE 348 (515)
Q Consensus 270 ~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e 348 (515)
.+.++.+.+.|+|+|.++.-...+.+.. +.+ ..+.++.++.+. +.+..+.+. +|+|.+....-+-..+..
T Consensus 70 ~~~~~~~~~~g~d~v~l~~~~~~~~~~~----~~~--~~i~~i~~v~~~---~~~~~~~~~gad~i~~~~~~~~G~~~~~ 140 (236)
T cd04730 70 EALLEVALEEGVPVVSFSFGPPAEVVER----LKA--AGIKVIPTVTSV---EEARKAEAAGADALVAQGAEAGGHRGTF 140 (236)
T ss_pred HHHHHHHHhCCCCEEEEcCCCCHHHHHH----HHH--cCCEEEEeCCCH---HHHHHHHHcCCCEEEEeCcCCCCCCCcc
Confidence 3556667788999999987644433333 332 256788887764 344454444 788876332211111111
Q ss_pred CHHHHHHHHHHHHH-hcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 349 DVPLLQEDIIRRCR-SMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 349 ~v~~aqk~Ii~~c~-~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
. ......++.++ ..++|++.+ .+.-+ ..++..++..|+|++++.
T Consensus 141 ~--~~~~~~i~~i~~~~~~Pvi~~---------GGI~~---~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 141 D--IGTFALVPEVRDAVDIPVIAA---------GGIAD---GRGIAAALALGADGVQMG 185 (236)
T ss_pred c--cCHHHHHHHHHHHhCCCEEEE---------CCCCC---HHHHHHHHHcCCcEEEEc
Confidence 1 01123333333 347899874 23333 245667788999999986
No 71
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=90.61 E-value=4.9 Score=40.50 Aligned_cols=77 Identities=17% Similarity=0.346 Sum_probs=49.0
Q ss_pred hcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEE--Eec--C-hhhhhcHHHHHhh-cCeeEEcCCcccccCCC
Q 010211 274 KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIV--KIE--S-ADSIPNLHSIISA-SDGAMVARGDLGAELPI 347 (515)
Q Consensus 274 ~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIa--KIE--t-~~aveNldeIl~~-sDgImIgrgDLg~elg~ 347 (515)
+.+.+.|+|||..+|.. ++..++++.+.. .++|++ -|= | .++++|++++++. ++|+-++|.=+..
T Consensus 163 ~~a~~~GADyikt~~~~---~~~~l~~~~~~~--~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~---- 233 (258)
T TIGR01949 163 RLGAELGADIVKTPYTG---DIDSFRDVVKGC--PAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQH---- 233 (258)
T ss_pred HHHHHHCCCEEeccCCC---CHHHHHHHHHhC--CCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcC----
Confidence 55668899999999863 455556655432 344443 332 2 4457899999988 8999998764422
Q ss_pred CCHHHHHHHHHH
Q 010211 348 EDVPLLQEDIIR 359 (515)
Q Consensus 348 e~v~~aqk~Ii~ 359 (515)
++...+.+.+.+
T Consensus 234 ~dp~~~~~~l~~ 245 (258)
T TIGR01949 234 DDPVGITKAVCK 245 (258)
T ss_pred CCHHHHHHHHHH
Confidence 445455554443
No 72
>PF14010 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3ODM_C.
Probab=90.25 E-value=0.3 Score=53.87 Aligned_cols=142 Identities=15% Similarity=0.177 Sum_probs=88.5
Q ss_pred cCCcEEEecccCCHHHHHHHHHHHH----------------hc-----CCCceEEEEecChhhhhcHHHHHhh-------
Q 010211 279 NQVDFYAVSFVKDAKVVHELKDYLK----------------SC-----NADIHVIVKIESADSIPNLHSIISA------- 330 (515)
Q Consensus 279 ~gvD~ValSfVrsa~dv~~vr~~l~----------------~~-----~~~i~IIaKIEt~~aveNldeIl~~------- 330 (515)
..+..|.+||+.+++++..+.+++. +. -+.+.||.-||..+++-|+++|+..
T Consensus 119 ~pIfEVILPMtts~~~l~~v~~~y~~~v~~k~~~~~~~~~~E~~g~~~p~~I~vIPL~Ed~~~~l~~~~Il~~y~~~~g~ 198 (491)
T PF14010_consen 119 QPIFEVILPMTTSAEELIRVYRYYRKFVAGKQEKLYDITVKEWIGEFDPEEIEVIPLFEDVDSLLNADEILEEYLKDKGR 198 (491)
T ss_dssp -S-SEEEESS--SHHHHHHHHHHHHHHHH--------HHHHH-SS---TTSSEEEEEE-SHHHHHTHHHHHHHHHHHTT-
T ss_pred cchheeeccccCCHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhccccCcCcceEeeccccHHHHhcHHHHHHHHHHHhcC
Confidence 4678999999999999988765432 11 2468999999999999999999986
Q ss_pred ---cCeeEEcCCcccccCCCC----CHHHHHHHHHHHHHhcCCcEE--EEeccccccccCC--CcChHHHhHHHHHHHh-
Q 010211 331 ---SDGAMVARGDLGAELPIE----DVPLLQEDIIRRCRSMQKPVI--VATNMLESMIDHP--TPTRAEVSDIAIAVRE- 398 (515)
Q Consensus 331 ---sDgImIgrgDLg~elg~e----~v~~aqk~Ii~~c~~aGKPvi--vATqmLeSMi~~~--~PtrAEv~DvanaV~~- 398 (515)
.--+|+||.|=++..|+- -+..+..++-+.-.+.|.|+. +.+ -|.-+.+ .|...+ +.+..
T Consensus 199 ~~~y~RVFLarSDpAmnyG~iaa~L~~k~AL~~l~~~~~e~gi~IyPIiG~---GS~PFRG~l~p~~~~-----~~~~EY 270 (491)
T PF14010_consen 199 DPEYQRVFLARSDPAMNYGHIAAVLANKYALSKLYELEEELGIPIYPIIGV---GSPPFRGGLSPPNVE-----RVLEEY 270 (491)
T ss_dssp --SEEEEEEESHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE----BSSGGGT---TTGHH-----HHHHHT
T ss_pred CchheeeeeccCchhhccchHHHHHHHHHHHHHHHHHHHhcCCceeeeecc---CCCCcCCCCChHhHH-----HHHHhc
Confidence 135899999999999972 344566777778899999983 321 1222211 333333 22332
Q ss_pred -CCcEEeeccccc-CCCCHHHHHHHHHHHHHHHh
Q 010211 399 -GADAVMLSGETA-HGKFPLKAVKVMHTVALRTE 430 (515)
Q Consensus 399 -G~D~vmLs~ETa-~G~yPveaV~~m~~I~~~aE 430 (515)
|...+-+ -+| .=+||.+-|+-..+.+++..
T Consensus 271 ~gv~T~TI--QSAfrYD~p~~~v~~ai~~l~~~~ 302 (491)
T PF14010_consen 271 PGVYTFTI--QSAFRYDYPYEEVIKAIEKLNEAP 302 (491)
T ss_dssp TT-SEEEE---HHHHHTTHHHHHHHHHHHHHHGG
T ss_pred CCeeEEEe--eehhhcCCCHHHHHHHHHHHHhcc
Confidence 3333333 334 44788887776666666644
No 73
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=90.17 E-value=5.5 Score=39.19 Aligned_cols=142 Identities=16% Similarity=0.162 Sum_probs=81.8
Q ss_pred CCCCHhhHH-HhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEec-----------ChhhhhcHHHHHhh
Q 010211 263 PSITDKDWE-DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIE-----------SADSIPNLHSIISA 330 (515)
Q Consensus 263 p~ltekD~~-dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIE-----------t~~aveNldeIl~~ 330 (515)
|..+..|.+ .++.+.++|+|.++++ +..+...+..+. + ...++.++- +..=+..+++.++.
T Consensus 16 p~~~~~d~~~~~~~~~~~g~~av~v~----~~~~~~~~~~~~--~-~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~~~ 88 (235)
T cd00958 16 PNPGLEDPEETVKLAAEGGADAVALT----KGIARAYGREYA--G-DIPLIVKLNGSTSLSPKDDNDKVLVASVEDAVRL 88 (235)
T ss_pred CCccccCHHHHHHHHHhcCCCEEEeC----hHHHHhcccccC--C-CCcEEEEECCCCCCCCCCCCchhhhcCHHHHHHC
Confidence 555677775 4477788899999876 233333333331 1 223443331 11223345666665
Q ss_pred -cCee--EEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCC----CcChHHHhH-HHHHHHhCCcE
Q 010211 331 -SDGA--MVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHP----TPTRAEVSD-IAIAVREGADA 402 (515)
Q Consensus 331 -sDgI--mIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~----~PtrAEv~D-vanaV~~G~D~ 402 (515)
+|++ .+-.+++. ..++....+++.+.|++.|.|+++=... ... .-+..++.. ...+...|+|.
T Consensus 89 Ga~~v~~~~~~~~~~----~~~~~~~i~~v~~~~~~~g~~~iie~~~-----~g~~~~~~~~~~~i~~~~~~a~~~GaD~ 159 (235)
T cd00958 89 GADAVGVTVYVGSEE----EREMLEELARVAAEAHKYGLPLIAWMYP-----RGPAVKNEKDPDLIAYAARIGAELGADI 159 (235)
T ss_pred CCCEEEEEEecCCch----HHHHHHHHHHHHHHHHHcCCCEEEEEec-----cCCcccCccCHHHHHHHHHHHHHHCCCE
Confidence 7877 55445442 3567778899999999999999872211 000 012244444 44577889999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHHH
Q 010211 403 VMLSGETAHGKFPLKAVKVMHTVALR 428 (515)
Q Consensus 403 vmLs~ETa~G~yPveaV~~m~~I~~~ 428 (515)
+-++..+ -++.+.++++.
T Consensus 160 Ik~~~~~--------~~~~~~~i~~~ 177 (235)
T cd00958 160 VKTKYTG--------DAESFKEVVEG 177 (235)
T ss_pred EEecCCC--------CHHHHHHHHhc
Confidence 9985321 24556666543
No 74
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=90.10 E-value=8.1 Score=40.82 Aligned_cols=124 Identities=21% Similarity=0.341 Sum_probs=74.3
Q ss_pred CCHhhHHHhhcchhcC--CcEEEecc--cCCHHHHHHHHHHHHhcCCCceEEEE-ecChhhhhcHHHHHhh-cCeeEEc-
Q 010211 265 ITDKDWEDIKFGVDNQ--VDFYAVSF--VKDAKVVHELKDYLKSCNADIHVIVK-IESADSIPNLHSIISA-SDGAMVA- 337 (515)
Q Consensus 265 ltekD~~dI~~al~~g--vD~ValSf--Vrsa~dv~~vr~~l~~~~~~i~IIaK-IEt~~aveNldeIl~~-sDgImIg- 337 (515)
.+++|++.+..-++.| +|+|.+=. -.+..-+..++. +++.-....+|++ +-|.+....+. +. +|+|.|+
T Consensus 91 ~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~-i~~~~p~~~vi~GnV~t~e~a~~l~---~aGad~I~V~~ 166 (321)
T TIGR01306 91 VKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKH-IKTHLPDSFVIAGNVGTPEAVRELE---NAGADATKVGI 166 (321)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHH-HHHhCCCCEEEEecCCCHHHHHHHH---HcCcCEEEECC
Confidence 3678888887777878 69887632 222333333433 4443355668888 98888776554 34 8999987
Q ss_pred -CCccc---cc--CCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 338 -RGDLG---AE--LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 338 -rgDLg---~e--lg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
+|=-. .. .|.... .+ .-|.+.+.+..+|+|. ..+..+ -.|++.++..|+|++|+.
T Consensus 167 G~G~~~~tr~~~g~g~~~~-~l-~ai~ev~~a~~~pVIa---------dGGIr~---~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 167 GPGKVCITKIKTGFGTGGW-QL-AALRWCAKAARKPIIA---------DGGIRT---HGDIAKSIRFGASMVMIG 227 (321)
T ss_pred CCCccccceeeeccCCCch-HH-HHHHHHHHhcCCeEEE---------ECCcCc---HHHHHHHHHcCCCEEeec
Confidence 33211 11 122211 11 2233334455688776 344433 468999999999999974
No 75
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=90.04 E-value=7.1 Score=37.25 Aligned_cols=135 Identities=12% Similarity=0.093 Sum_probs=77.1
Q ss_pred HHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCC-C-C
Q 010211 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELP-I-E 348 (515)
Q Consensus 271 ~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg-~-e 348 (515)
+.++.+.+.|+|+|.+.--. .++.....+.++..+.+..+. ++.....+.+.++...+|.+.+.+-+-|..=. + +
T Consensus 70 ~~~~~~~~~gadgv~vh~~~-~~~~~~~~~~~~~~g~~~~~~--~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~ 146 (210)
T TIGR01163 70 RYIEDFAEAGADIITVHPEA-SEHIHRLLQLIKDLGAKAGIV--LNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIP 146 (210)
T ss_pred HHHHHHHHcCCCEEEEccCC-chhHHHHHHHHHHcCCcEEEE--ECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcccccH
Confidence 34566668899998876433 234444445666666555443 44444577788887778998886544332211 1 2
Q ss_pred CHHHHHHHHHHHHHhc--CCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHH
Q 010211 349 DVPLLQEDIIRRCRSM--QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKV 421 (515)
Q Consensus 349 ~v~~aqk~Ii~~c~~a--GKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~ 421 (515)
......+++-+..++. ++|+.++. +. +. ..+..++..|+|++.+.+.-..-+-|.++++.
T Consensus 147 ~~~~~i~~i~~~~~~~~~~~~i~v~G---------GI-~~---env~~l~~~gad~iivgsai~~~~d~~~~~~~ 208 (210)
T TIGR01163 147 DTLEKIREVRKMIDENGLSILIEVDG---------GV-ND---DNARELAEAGADILVAGSAIFGADDYKEVIRS 208 (210)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEC---------Cc-CH---HHHHHHHHcCCCEEEEChHHhCCCCHHHHHHH
Confidence 2223334444444433 35765532 22 21 34567788999999987655434456666654
No 76
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=89.88 E-value=8.3 Score=37.23 Aligned_cols=139 Identities=12% Similarity=0.086 Sum_probs=77.3
Q ss_pred HHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCC--C
Q 010211 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPI--E 348 (515)
Q Consensus 271 ~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~--e 348 (515)
+.+..+.+.|+|+|.+..-.. ++.....+.+...+. .+..-+......+.+.++...+|.+.++..+-|..-.. +
T Consensus 75 ~~i~~~~~~g~d~v~vh~~~~-~~~~~~~~~~~~~~~--~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~ 151 (220)
T PRK05581 75 RYVPDFAKAGADIITFHVEAS-EHIHRLLQLIKSAGI--KAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQKFIP 151 (220)
T ss_pred HHHHHHHHcCCCEEEEeeccc-hhHHHHHHHHHHcCC--EEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCcccccH
Confidence 445555688999988876544 333334444544443 34444432334666788877899888875443332211 2
Q ss_pred CHHHHHHHHHHHHHhcCC-cEE-EEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHHHH
Q 010211 349 DVPLLQEDIIRRCRSMQK-PVI-VATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTV 425 (515)
Q Consensus 349 ~v~~aqk~Ii~~c~~aGK-Pvi-vATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~I 425 (515)
......+++.+.+..++. |.+ ++ ..-.| . ++..+...|+|++.+.+.-..-+-|.++++.+.++
T Consensus 152 ~~~~~i~~~~~~~~~~~~~~~i~v~--------GGI~~--~---nv~~l~~~GaD~vvvgSai~~~~d~~~~~~~~~~~ 217 (220)
T PRK05581 152 EVLEKIRELRKLIDERGLDILIEVD--------GGINA--D---NIKECAEAGADVFVAGSAVFGAPDYKEAIDSLRAE 217 (220)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEE--------CCCCH--H---HHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHH
Confidence 222333334333443333 333 32 22233 2 34455668999999876655456788888877765
No 77
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=89.76 E-value=7.5 Score=38.94 Aligned_cols=115 Identities=16% Similarity=0.121 Sum_probs=76.0
Q ss_pred HhhcchhcCCcEEEecc--cCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeE---EcCCcccccCC
Q 010211 272 DIKFGVDNQVDFYAVSF--VKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAM---VARGDLGAELP 346 (515)
Q Consensus 272 dI~~al~~gvD~ValSf--Vrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgIm---IgrgDLg~elg 346 (515)
.++.+.+.|+|+|.+.- ++..++..++.+++++.|-+..+.+.=+|+ .+.++.+++.+|+++ +-+|..+ .
T Consensus 93 ~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~--~e~l~~~~~~~~~~l~msv~~~~g~-~-- 167 (244)
T PRK13125 93 FLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFP--DLLIHRLSKLSPLFIYYGLRPATGV-P-- 167 (244)
T ss_pred HHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCC--HHHHHHHHHhCCCEEEEEeCCCCCC-C--
Confidence 36666788999998873 355678888888898888887777777764 567899999999887 3344532 2
Q ss_pred CCCHHHHHHHHHHHHHhc--CCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 347 IEDVPLLQEDIIRRCRSM--QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 347 ~e~v~~aqk~Ii~~c~~a--GKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
+..-...-++..++. .+|+.+ ..+.-+.. ++..+...|+|+++.-
T Consensus 168 ---~~~~~~~~i~~lr~~~~~~~i~v---------~gGI~~~e---~i~~~~~~gaD~vvvG 214 (244)
T PRK13125 168 ---LPVSVERNIKRVRNLVGNKYLVV---------GFGLDSPE---DARDALSAGADGVVVG 214 (244)
T ss_pred ---chHHHHHHHHHHHHhcCCCCEEE---------eCCcCCHH---HHHHHHHcCCCEEEEC
Confidence 333334344444443 367655 33443433 4556678899998863
No 78
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=89.51 E-value=7.1 Score=40.18 Aligned_cols=167 Identities=14% Similarity=0.034 Sum_probs=102.4
Q ss_pred CceeeeCCCccCCCCCCHhhHHHhhcch-hc-CCcEEEec-ccCCHHHHHHHHHHHHhcC-----CCceEEEEecChhhh
Q 010211 250 RRHLNVRGKSANLPSITDKDWEDIKFGV-DN-QVDFYAVS-FVKDAKVVHELKDYLKSCN-----ADIHVIVKIESADSI 321 (515)
Q Consensus 250 ~KgVnlpg~~~~lp~ltekD~~dI~~al-~~-gvD~ValS-fVrsa~dv~~vr~~l~~~~-----~~i~IIaKIEt~~av 321 (515)
|-|..-|+.. ++.+++..|...+ +. |+|.|=+. |.-++++.+.+++..+... .+..+++.+....+
T Consensus 6 RDG~Q~~~~~-----~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~~~~~~~- 79 (280)
T cd07945 6 RDGEQTSGVS-----FSPSEKLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLGFVDGDKS- 79 (280)
T ss_pred CCcCcCCCCc-----cCHHHHHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEEecCcHHH-
Confidence 4455555554 4667777776663 55 99999775 4478877777776654221 13556666655444
Q ss_pred hcHHHHHhh-cCeeEEc--CCccccc----CCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCC-CcChHHHhHHH
Q 010211 322 PNLHSIISA-SDGAMVA--RGDLGAE----LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHP-TPTRAEVSDIA 393 (515)
Q Consensus 322 eNldeIl~~-sDgImIg--rgDLg~e----lg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~-~PtrAEv~Dva 393 (515)
++..++. +|.|-+. -.|.-.. ...++.....+++++.|+++|..+.+.- + ...+| +-+...+.+.+
T Consensus 80 --~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~---~-d~~~~~r~~~~~~~~~~ 153 (280)
T cd07945 80 --VDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYL---E-DWSNGMRDSPDYVFQLV 153 (280)
T ss_pred --HHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEE---E-eCCCCCcCCHHHHHHHH
Confidence 3444444 5655443 1222111 1235677778899999999999876643 1 11122 11233455554
Q ss_pred H-HHHhCCcEEeecccccCCCCHHHHHHHHHHHHHHH
Q 010211 394 I-AVREGADAVMLSGETAHGKFPLKAVKVMHTVALRT 429 (515)
Q Consensus 394 n-aV~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~a 429 (515)
. +...|+|.+-|. +|.=...|.+..+.+..+....
T Consensus 154 ~~~~~~G~~~i~l~-DT~G~~~P~~v~~l~~~l~~~~ 189 (280)
T cd07945 154 DFLSDLPIKRIMLP-DTLGILSPFETYTYISDMVKRY 189 (280)
T ss_pred HHHHHcCCCEEEec-CCCCCCCHHHHHHHHHHHHhhC
Confidence 4 556699999985 8887888999888888886544
No 79
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=89.32 E-value=9.8 Score=38.27 Aligned_cols=142 Identities=11% Similarity=0.111 Sum_probs=92.2
Q ss_pred HHhhcchhcCCcEEEecccCCH-HHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCC--
Q 010211 271 EDIKFGVDNQVDFYAVSFVKDA-KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPI-- 347 (515)
Q Consensus 271 ~dI~~al~~gvD~ValSfVrsa-~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~-- 347 (515)
+.|+.-.+.|+|+|.+- ++.. .+...+-+++++.|.+..|..+-.|+ ++.++.++..+|.|+| ++++-|+
T Consensus 73 ~~i~~~~~aGad~it~H-~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~--~~~l~~~l~~vD~VLv----MsV~PGf~G 145 (229)
T PRK09722 73 DYIDQLADAGADFITLH-PETINGQAFRLIDEIRRAGMKVGLVLNPETP--VESIKYYIHLLDKITV----MTVDPGFAG 145 (229)
T ss_pred HHHHHHHHcCCCEEEEC-ccCCcchHHHHHHHHHHcCCCEEEEeCCCCC--HHHHHHHHHhcCEEEE----EEEcCCCcc
Confidence 45555567899999874 4643 46777778899999999999999985 6889999999999998 4555554
Q ss_pred ----CCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCC--CCHHHHHHH
Q 010211 348 ----EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHG--KFPLKAVKV 421 (515)
Q Consensus 348 ----e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G--~yPveaV~~ 421 (515)
+.+..-.+++-+...++|..+.+.. . +--+.. -+......|+|.+.+.+---.| +-|.++++.
T Consensus 146 Q~fi~~~l~KI~~lr~~~~~~~~~~~IeV-------D-GGI~~~---~i~~~~~aGad~~V~Gss~iF~~~~d~~~~i~~ 214 (229)
T PRK09722 146 QPFIPEMLDKIAELKALRERNGLEYLIEV-------D-GSCNQK---TYEKLMEAGADVFIVGTSGLFNLDEDIDEAWDI 214 (229)
T ss_pred hhccHHHHHHHHHHHHHHHhcCCCeEEEE-------E-CCCCHH---HHHHHHHcCCCEEEEChHHHcCCCCCHHHHHHH
Confidence 2233333333333445665543321 2 222222 2335677899998875321234 358899999
Q ss_pred HHHHHHHHh
Q 010211 422 MHTVALRTE 430 (515)
Q Consensus 422 m~~I~~~aE 430 (515)
|++...++.
T Consensus 215 l~~~~~~~~ 223 (229)
T PRK09722 215 MTAQIEAAT 223 (229)
T ss_pred HHHHHHHhh
Confidence 998776654
No 80
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=89.19 E-value=7.6 Score=40.04 Aligned_cols=126 Identities=20% Similarity=0.302 Sum_probs=71.0
Q ss_pred hhHHHh-hcchhcCCcEEEeccc---------------CCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-
Q 010211 268 KDWEDI-KFGVDNQVDFYAVSFV---------------KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA- 330 (515)
Q Consensus 268 kD~~dI-~~al~~gvD~ValSfV---------------rsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~- 330 (515)
+|+.+. +...+.|+|+|-+.+- ++++.+.++-+.+.+. -+++|++||- + .+.++.++++.
T Consensus 113 ~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~-~~~Pv~vKl~-~-~~~~~~~~a~~~ 189 (299)
T cd02940 113 EDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREA-VKIPVIAKLT-P-NITDIREIARAA 189 (299)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHh-cCCCeEEECC-C-CchhHHHHHHHH
Confidence 454333 3333457887765321 3344444444444432 3588999994 2 44566777663
Q ss_pred ----cCeeEEc-----CCccc---------c----cC----CCCCHHHHHHHHHHHHHhc--CCcEEEEeccccccccCC
Q 010211 331 ----SDGAMVA-----RGDLG---------A----EL----PIEDVPLLQEDIIRRCRSM--QKPVIVATNMLESMIDHP 382 (515)
Q Consensus 331 ----sDgImIg-----rgDLg---------~----el----g~e~v~~aqk~Ii~~c~~a--GKPvivATqmLeSMi~~~ 382 (515)
+|||.+. |-++- + .. |....+...+.|-+..++. ..|+|-. .+
T Consensus 190 ~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~---------GG 260 (299)
T cd02940 190 KEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGI---------GG 260 (299)
T ss_pred HHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEE---------CC
Confidence 7998741 11110 0 01 1133455566666666666 6777753 23
Q ss_pred CcChHHHhHHHHHHHhCCcEEeeccc
Q 010211 383 TPTRAEVSDIAIAVREGADAVMLSGE 408 (515)
Q Consensus 383 ~PtrAEv~DvanaV~~G~D~vmLs~E 408 (515)
. +. ..|+..++..|+|+||+...
T Consensus 261 I-~~--~~da~~~l~aGA~~V~i~ta 283 (299)
T cd02940 261 I-ES--WEDAAEFLLLGASVVQVCTA 283 (299)
T ss_pred C-CC--HHHHHHHHHcCCChheEcee
Confidence 3 32 34888999999999999744
No 81
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=89.03 E-value=15 Score=34.17 Aligned_cols=120 Identities=20% Similarity=0.130 Sum_probs=68.9
Q ss_pred HHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCC-CceEEEEecCh-------hhhhcHHHHHhh-cCeeEEcCC-c
Q 010211 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNA-DIHVIVKIESA-------DSIPNLHSIISA-SDGAMVARG-D 340 (515)
Q Consensus 271 ~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~-~i~IIaKIEt~-------~aveNldeIl~~-sDgImIgrg-D 340 (515)
+.+++.++.|+|+|.+.- +-+..+++.. +. ++.+++++=.. +.++..++-.+. +|++++.+. .
T Consensus 17 ~~~~~~~~~gv~gi~~~g----~~i~~~~~~~---~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~ 89 (201)
T cd00945 17 KLCDEAIEYGFAAVCVNP----GYVRLAADAL---AGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIG 89 (201)
T ss_pred HHHHHHHHhCCcEEEECH----HHHHHHHHHh---CCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHH
Confidence 445778889999987763 3344444433 44 78899999554 466666666665 899998532 1
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCc--ChHHHhHHHH-HHHhCCcEEeec
Q 010211 341 LGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTP--TRAEVSDIAI-AVREGADAVMLS 406 (515)
Q Consensus 341 Lg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~P--trAEv~Dvan-aV~~G~D~vmLs 406 (515)
...+-..+.+....+++.+.| +.+.|+++.. .|.. +..++...++ +...|+|++=.+
T Consensus 90 ~~~~~~~~~~~~~~~~i~~~~-~~~~pv~iy~--------~p~~~~~~~~~~~~~~~~~~~g~~~iK~~ 149 (201)
T cd00945 90 SLKEGDWEEVLEEIAAVVEAA-DGGLPLKVIL--------ETRGLKTADEIAKAARIAAEAGADFIKTS 149 (201)
T ss_pred HHhCCCHHHHHHHHHHHHHHh-cCCceEEEEE--------ECCCCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 111100234445555565555 5699988742 1221 2223333333 235688887654
No 82
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=88.98 E-value=23 Score=36.15 Aligned_cols=129 Identities=19% Similarity=0.239 Sum_probs=69.5
Q ss_pred hhHH-HhhcchhcCCcEEEecc------------cCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh----
Q 010211 268 KDWE-DIKFGVDNQVDFYAVSF------------VKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA---- 330 (515)
Q Consensus 268 kD~~-dI~~al~~gvD~ValSf------------Vrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~---- 330 (515)
+|.. ..+.+.+.|+|+|=+.| ..+.+.+.++-+.+.+. -++.|++|| ++ ..+++.+|++.
T Consensus 102 ~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~-~~~Pv~vKl-~~-~~~~~~~~a~~~~~~ 178 (296)
T cd04740 102 EEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKA-TDVPVIVKL-TP-NVTDIVEIARAAEEA 178 (296)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhc-cCCCEEEEe-CC-CchhHHHHHHHHHHc
Confidence 4543 33455567899986633 34455444444444432 268899998 32 23345555543
Q ss_pred -cCeeEE-----cCC-ccc-------cc----CCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHH
Q 010211 331 -SDGAMV-----ARG-DLG-------AE----LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDI 392 (515)
Q Consensus 331 -sDgImI-----grg-DLg-------~e----lg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~Dv 392 (515)
+|+|.+ |+. |+- .. -|...-+...+.+-+..+..++|++... +.-+. .|+
T Consensus 179 G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~G---------GI~~~---~da 246 (296)
T cd04740 179 GADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVG---------GIASG---EDA 246 (296)
T ss_pred CCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEEC---------CCCCH---HHH
Confidence 688765 221 221 00 1112222333444444445689988733 33332 366
Q ss_pred HHHHHhCCcEEeecccccC
Q 010211 393 AIAVREGADAVMLSGETAH 411 (515)
Q Consensus 393 anaV~~G~D~vmLs~ETa~ 411 (515)
..++..|+|+|++..---.
T Consensus 247 ~~~l~~GAd~V~igra~l~ 265 (296)
T cd04740 247 LEFLMAGASAVQVGTANFV 265 (296)
T ss_pred HHHHHcCCCEEEEchhhhc
Confidence 7889999999999744333
No 83
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=88.86 E-value=4.7 Score=45.54 Aligned_cols=155 Identities=14% Similarity=0.151 Sum_probs=102.2
Q ss_pred hhHHHhhcchhcCCcEEEecccCCHHHH---HHHHHHHHhcCCCceEEEEec--ChhhhhcHHHHHhhcCeeEEcCCccc
Q 010211 268 KDWEDIKFGVDNQVDFYAVSFVKDAKVV---HELKDYLKSCNADIHVIVKIE--SADSIPNLHSIISASDGAMVARGDLG 342 (515)
Q Consensus 268 kD~~dI~~al~~gvD~ValSfVrsa~dv---~~vr~~l~~~~~~i~IIaKIE--t~~aveNldeIl~~sDgImIgrgDLg 342 (515)
...+.|....+.|+|+|-+. |.+.++. ..+++.|...|-+++++|-|- -.-|+.. ++.+|.|=|-||.++
T Consensus 46 atv~Qi~~L~~aGceiVRvt-vp~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~A~~a----~~~vdkiRINPGNi~ 120 (606)
T PRK00694 46 GTVRQICALQEWGCDIVRVT-VQGLKEAQACEHIKERLIQQGISIPLVADIHFFPQAAMHV----ADFVDKVRINPGNYV 120 (606)
T ss_pred HHHHHHHHHHHcCCCEEEEc-CCCHHHHHhHHHHHHHHhccCCCCCEEeecCCChHHHHHH----HHhcCceEECCcccC
Confidence 33455556667899997765 4555554 455666777788999999883 2333322 223899999999997
Q ss_pred cc---------------CCCCCHHHHHHHHHHHHHhcCCcEEEEec-------cccccccCCCcChHH-----HhHHHHH
Q 010211 343 AE---------------LPIEDVPLLQEDIIRRCRSMQKPVIVATN-------MLESMIDHPTPTRAE-----VSDIAIA 395 (515)
Q Consensus 343 ~e---------------lg~e~v~~aqk~Ii~~c~~aGKPvivATq-------mLeSMi~~~~PtrAE-----v~Dvana 395 (515)
-. -+++++.+-.+.++++|+++|+|+=+-++ +|+.. . +|..- ...+--+
T Consensus 121 ~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IRIGvN~GSL~~~i~~~y--G--~tpegmVeSAle~~~i~ 196 (606)
T PRK00694 121 DKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMRIGVNHGSLSERVMQRY--G--DTIEGMVYSALEYIEVC 196 (606)
T ss_pred CccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHh--C--CCHHHHHHHHHHHHHHH
Confidence 61 12356778889999999999999866552 22211 1 22111 2223334
Q ss_pred HHhCCcEEeecccccCCCCHHHHHHHHHHHHHHHhcCCC
Q 010211 396 VREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLP 434 (515)
Q Consensus 396 V~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~ 434 (515)
-..|++=+.+| .+-..|...|+.-+.++.+.++.-+
T Consensus 197 e~~~f~diviS---~KsSnv~~mi~AyrlLa~~~d~eg~ 232 (606)
T PRK00694 197 EKLDYRDVVFS---MKSSNPKVMVAAYRQLAKDLDARGW 232 (606)
T ss_pred HHCCCCcEEEE---EEcCCHHHHHHHHHHHHHHhhccCC
Confidence 45688888887 5667788888888888888876544
No 84
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=88.71 E-value=13 Score=35.46 Aligned_cols=130 Identities=14% Similarity=0.128 Sum_probs=73.2
Q ss_pred HhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceE-EEEecChhhhhcHHHHHh-hcCeeEEcCCcccccCCCCC
Q 010211 272 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHV-IVKIESADSIPNLHSIIS-ASDGAMVARGDLGAELPIED 349 (515)
Q Consensus 272 dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~I-IaKIEt~~aveNldeIl~-~sDgImIgrgDLg~elg~e~ 349 (515)
.++.+.+.|+|++.+..-...+...++.+++++.|-.+.+ +..-.|++-+. +++. -+|.+.+.++--+...|.+.
T Consensus 69 ~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~---~~~~~~~d~v~~~~~~~~~~~~~~~ 145 (202)
T cd04726 69 EAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRA---KLLKLGVDIVILHRGIDAQAAGGWW 145 (202)
T ss_pred HHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHH---HHHHCCCCEEEEcCcccccccCCCC
Confidence 3456678899999987654445566666777665543332 24555554432 2455 48999887653233332223
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHH
Q 010211 350 VPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVK 420 (515)
Q Consensus 350 v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~ 420 (515)
.....+++.+. ...|+.+. .+. +. ..+..+...|+|++.+.+--..-.-|.++++
T Consensus 146 ~~~~i~~~~~~---~~~~i~~~---------GGI-~~---~~i~~~~~~Gad~vvvGsai~~~~d~~~~~~ 200 (202)
T cd04726 146 PEDDLKKVKKL---LGVKVAVA---------GGI-TP---DTLPEFKKAGADIVIVGRAITGAADPAEAAR 200 (202)
T ss_pred CHHHHHHHHhh---cCCCEEEE---------CCc-CH---HHHHHHHhcCCCEEEEeehhcCCCCHHHHHh
Confidence 33333333322 56777663 122 21 2466788899999988644333344655554
No 85
>PTZ00005 phosphoglycerate kinase; Provisional
Probab=88.69 E-value=3.8 Score=44.70 Aligned_cols=262 Identities=15% Similarity=0.164 Sum_probs=128.8
Q ss_pred HHHHHHHHHhCCc-EEEEecCCC-Ch----HHHHHHHHHHHHHHhhcCCceEEEEEecCCCeeeeeccCCcEEEecCCEE
Q 010211 114 REMIWKLAEEGMN-VARLNMSHG-DH----ASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQPIILKEGQEF 187 (515)
Q Consensus 114 ~e~i~~li~aGm~-v~RiN~SHg-~~----e~~~~~i~~ir~~~~~~~~~~i~I~lDL~GPkIRtG~l~~~i~L~~G~~v 187 (515)
..+|+.|++.|.. |. =+||- -+ +....+-.-....++.++ ++|...-|.-||+.+- ..-.|+.|+.+
T Consensus 45 lpTI~~L~~~gak~vv--l~SHlGRP~g~~~~~~SL~~va~~L~~lL~-~~V~fv~d~~g~~~~~----~i~~l~~GeVl 117 (417)
T PTZ00005 45 LPTIKYLLEQGAKSVV--LMSHLGRPDGRRVEKYSLKPVVPKLEELLG-KKVTFLNDCVGPEVEE----ACANAKNGSVI 117 (417)
T ss_pred HHHHHHHHHCCCCEEE--EEecCCCCCCCcCcccCHHHHHHHHHHHHC-CCeEECCCCCCHHHHH----HHHcCCCCCEE
Confidence 3589999999986 43 27883 22 111111112233445566 8998888999988651 12357788887
Q ss_pred EEEeecCCCCcceEE-------e-ccc----ccccccCcCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEeccCceeee
Q 010211 188 NFTIKRGVSTEDTVS-------V-NYD----DFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNV 255 (515)
Q Consensus 188 ~lt~~~~~~~~~~i~-------v-~~~----~l~~~v~~Gd~IliDDG~I~l~V~~~~~~~v~~~V~~gG~L~s~KgVnl 255 (515)
.|-.-+....+.... . |.+ .|.+.+.+--.||++|.-=.. -...-++ -|
T Consensus 118 LLENvRF~~~Ee~~~~~~~~~~~~~d~~~~~~fa~~LA~l~DiyVNDAFg~a---HR~haS~-------------~g--- 178 (417)
T PTZ00005 118 LLENLRFHIEEEGKGVDANGNKVKADKEEVKKFRKSLTKLGDIYVNDAFGTA---HRAHSSM-------------VG--- 178 (417)
T ss_pred EEeccccccccccccccccccccCCCHHHHHHHHHHHHhhCCEEEecchhhh---hhhcccc-------------cc---
Confidence 775544322222111 0 111 255555444447888731110 0000000 00
Q ss_pred CCCccCCCCCCHhhHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCC-ceEE--EEecChhhhhcHHHHHhhcC
Q 010211 256 RGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNAD-IHVI--VKIESADSIPNLHSIISASD 332 (515)
Q Consensus 256 pg~~~~lp~ltekD~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~-i~II--aKIEt~~aveNldeIl~~sD 332 (515)
+|. ..-+ +.|. =.+++..+...+...... +.|+ +|+.+.-++ |+.++..+|
T Consensus 179 ------i~~---------------~~s~--aG~l-mekEl~~L~~~~~~p~rP~vaIlGGaKvsdKi~v--l~~Ll~k~D 232 (417)
T PTZ00005 179 ------VDL---------------PVKV--AGFL-MKKELDYFSKALENPQRPFLAILGGAKVADKIQL--IKNLLDKVD 232 (417)
T ss_pred ------cCC---------------ccch--hhHH-HHHHHHHHHHHhcCCCCceEEEEcCccHHhHHHH--HHHHHHhcC
Confidence 000 0000 0110 012333344444321111 2222 377766555 777788899
Q ss_pred eeEEcCC--------cccccCCC----CCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCC
Q 010211 333 GAMVARG--------DLGAELPI----EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGA 400 (515)
Q Consensus 333 gImIgrg--------DLg~elg~----e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~ 400 (515)
.|++|=+ .-|.++|- ++....-++|+++|.+.|+++++-+-..-+=.......+.++.+ .+.+- .
T Consensus 233 ~iligG~ma~tFL~A~~G~~iG~sl~E~~~i~~a~~il~~a~~~~~~I~lPvD~~v~~~~~~~~~~~~~~~-~~~ip--~ 309 (417)
T PTZ00005 233 EMIIGGGMAFTFKKVLDNMPIGKSLFDEEGAKIVKEIMEKAKEKNVKIHLPVDFVCADKFDNNANTKVVTD-KEGIP--D 309 (417)
T ss_pred EEEECcHHHHHHHHHhCCCccCccccChhhHHHHHHHHHHHHhcCCEEeCCceEEEecccCCCCCeEEecC-ccCCC--C
Confidence 9998722 23444553 35666678999999999998876332221100000000000000 01111 1
Q ss_pred cEEeecccccCCCCHHHHHHHHHHHHHHHhcCCCCCC
Q 010211 401 DAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSI 437 (515)
Q Consensus 401 D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~ 437 (515)
|...|- +|. ++++...+++..+...+|.-.
T Consensus 310 ~~~~lD----IGp---~Ti~~~~~~i~~akTV~wNGP 339 (417)
T PTZ00005 310 GWMGLD----AGP---KSIEEFAEAILRAKTIVWNGP 339 (417)
T ss_pred CCEEec----cCH---HHHHHHHHHHhhCCEEEEECC
Confidence 112222 443 788999999999999888643
No 86
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=88.38 E-value=8.4 Score=42.59 Aligned_cols=122 Identities=23% Similarity=0.226 Sum_probs=75.0
Q ss_pred hHHHhhcchhcCCcEEEec--ccCCHHHHHHHHHHHHhcCCCce-EEEEecChhhhhcHHHHHhhcCeeEEcCCcccc--
Q 010211 269 DWEDIKFGVDNQVDFYAVS--FVKDAKVVHELKDYLKSCNADIH-VIVKIESADSIPNLHSIISASDGAMVARGDLGA-- 343 (515)
Q Consensus 269 D~~dI~~al~~gvD~ValS--fVrsa~dv~~vr~~l~~~~~~i~-IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~-- 343 (515)
+.+.++..++.|+|.+.+- .-+ .+.+....+.+.....++. ++.-|-|.+...++.+. =+|+|-+|=|-=+.
T Consensus 229 ~~e~a~~L~~agvdvivvD~a~g~-~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~a--Gad~i~vg~g~gs~~~ 305 (486)
T PRK05567 229 NEERAEALVEAGVDVLVVDTAHGH-SEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEA--GADAVKVGIGPGSICT 305 (486)
T ss_pred hHHHHHHHHHhCCCEEEEECCCCc-chhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHc--CCCEEEECCCCCcccc
Confidence 3566666678899987652 112 2344444455555444555 45678888777655431 38998775332121
Q ss_pred -----cCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 344 -----ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 344 -----elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
..|.+ -..+..++.+.|++.|+|+|. ..+..+- .|++.|+..|+|++|+-
T Consensus 306 ~r~~~~~g~p-~~~~~~~~~~~~~~~~~~via---------dGGi~~~---~di~kAla~GA~~v~~G 360 (486)
T PRK05567 306 TRIVAGVGVP-QITAIADAAEAAKKYGIPVIA---------DGGIRYS---GDIAKALAAGASAVMLG 360 (486)
T ss_pred ceeecCCCcC-HHHHHHHHHHHhccCCCeEEE---------cCCCCCH---HHHHHHHHhCCCEEEEC
Confidence 22323 234556667777788999887 4455543 57889999999999973
No 87
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=88.22 E-value=2.5 Score=41.87 Aligned_cols=152 Identities=18% Similarity=0.235 Sum_probs=94.5
Q ss_pred CCCCHh-hH-HHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChh-----h-----hhcHHHHHhh
Q 010211 263 PSITDK-DW-EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESAD-----S-----IPNLHSIISA 330 (515)
Q Consensus 263 p~ltek-D~-~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~-----a-----veNldeIl~~ 330 (515)
|..+.. |. +.++.+++.|++.|.++ +.-+...++.+...+..+.++.....-. - +...++.++.
T Consensus 13 ~~~~~~~~~~~~~~~a~~~~~~av~v~----p~~~~~~~~~~~~~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~ 88 (236)
T PF01791_consen 13 GPMTGEEDIKKLCREAIEYGFDAVCVT----PGYVKPAAELLAGSGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRL 88 (236)
T ss_dssp TTHHHHHHHHHHHHHHHHHTSSEEEEE----GGGHHHHHHHSTTSTSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHT
T ss_pred CCCCchhhHHHHHHHHHHhCCCEEEEC----HHHHHHHHHHhhccccccceEEEeCCCCCccccccccchHHHHHHHHHc
Confidence 344454 54 55678889999999876 3455566666655445677887776422 2 4455555555
Q ss_pred -cCeeEEc--CCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHH---------HhHHH-HHHH
Q 010211 331 -SDGAMVA--RGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE---------VSDIA-IAVR 397 (515)
Q Consensus 331 -sDgImIg--rgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAE---------v~Dva-naV~ 397 (515)
+|+|-+- .+-+.-+- ...+.+-.+++++.|+..|.|+|+ . +.|+..+ +...+ -+..
T Consensus 89 GAd~vd~vi~~~~~~~~~-~~~~~~~i~~v~~~~~~~gl~vIl---------E-~~l~~~~~~~~~~~~~I~~a~ria~e 157 (236)
T PF01791_consen 89 GADEVDVVINYGALGSGN-EDEVIEEIAAVVEECHKYGLKVIL---------E-PYLRGEEVADEKKPDLIARAARIAAE 157 (236)
T ss_dssp T-SEEEEEEEHHHHHTTH-HHHHHHHHHHHHHHHHTSEEEEEE---------E-ECECHHHBSSTTHHHHHHHHHHHHHH
T ss_pred CCceeeeecccccccccc-HHHHHHHHHHHHHHHhcCCcEEEE---------E-EecCchhhcccccHHHHHHHHHHHHH
Confidence 6665443 11111111 256778889999999999999998 3 4455555 33333 3467
Q ss_pred hCCcEEeecccccCCCCHHHHHHHHHHHHHHHh
Q 010211 398 EGADAVMLSGETAHGKFPLKAVKVMHTVALRTE 430 (515)
Q Consensus 398 ~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE 430 (515)
.|+|.+=.+.=.. ...-.+.++.|.+++..+.
T Consensus 158 ~GaD~vKt~tg~~-~~~t~~~~~~~~~~~~~~~ 189 (236)
T PF01791_consen 158 LGADFVKTSTGKP-VGATPEDVELMRKAVEAAP 189 (236)
T ss_dssp TT-SEEEEE-SSS-SCSHHHHHHHHHHHHHTHS
T ss_pred hCCCEEEecCCcc-ccccHHHHHHHHHHHHhcC
Confidence 8999987653323 4555688999999988665
No 88
>PLN03034 phosphoglycerate kinase; Provisional
Probab=87.19 E-value=4.3 Score=44.98 Aligned_cols=295 Identities=15% Similarity=0.128 Sum_probs=151.4
Q ss_pred HHHHHHHHhCCcEEEEecCCCChH----HHHHHHHHHHHHHhhcCCceEEEEEecCCCeeeeeccCCcEEEecCCEEEEE
Q 010211 115 EMIWKLAEEGMNVARLNMSHGDHA----SHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQPIILKEGQEFNFT 190 (515)
Q Consensus 115 e~i~~li~aGm~v~RiN~SHg~~e----~~~~~i~~ir~~~~~~~~~~i~I~lDL~GPkIRtG~l~~~i~L~~G~~v~lt 190 (515)
.+|+.|++.|..|.= +||-..- ....+-.-....++.++ ++|...=|.-||+++- .--.|+.|+.+.|-
T Consensus 122 pTI~~L~~~gakvVl--~SHlGRPkg~~~~~SL~pva~~Ls~lL~-~~V~fv~d~~G~~~~~----~i~~l~~GeVlLLE 194 (481)
T PLN03034 122 PTIKYLISNGAKVIL--SSHLGRPKGVTPKFSLAPLVPRLSELLG-IQVVKADDCIGPEVEK----LVASLPEGGVLLLE 194 (481)
T ss_pred HHHHHHHHCCCeEEE--EEecCCCCCCCcccCHHHHHHHHHHHhC-CCeEECCCCCCHHHHH----HHhcCCCCcEEEEe
Confidence 489999999987654 4775421 11122222334445566 8998888888888762 11257788888776
Q ss_pred eecCCCCcceEEecccccccccCcCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEeccCceeeeCCCccCCCCCCHhhH
Q 010211 191 IKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDW 270 (515)
Q Consensus 191 ~~~~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~~~~~~v~~~V~~gG~L~s~KgVnlpg~~~~lp~ltekD~ 270 (515)
.-+....+.. |.++|.+.+.+.-.||++|.-=... ...-++ ..+|.
T Consensus 195 NvRF~~eE~~---nd~~fa~~LA~l~DiyVNDAFgtaH---R~haS~----------------------vGi~~------ 240 (481)
T PLN03034 195 NVRFYKEEEK---NEPEFAKKLASLADLYVNDAFGTAH---RAHAST----------------------EGVTK------ 240 (481)
T ss_pred ccCcCccccc---CcHHHHHHHHhhCCEEEecchhhhH---hcccch----------------------hhhhh------
Confidence 5544333322 4456777775544588888321100 000000 00000
Q ss_pred HHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCC-ceEE--EEecChhhhhcHHHHHhhcCeeEEcCC-------c
Q 010211 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNAD-IHVI--VKIESADSIPNLHSIISASDGAMVARG-------D 340 (515)
Q Consensus 271 ~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~-i~II--aKIEt~~aveNldeIl~~sDgImIgrg-------D 340 (515)
.++ .-+ ..|. =.+++..+.+.+.....- +.|+ +||.+.-++ |+.++..+|.+++|=| -
T Consensus 241 -----~l~--ps~--aG~L-mekEl~~L~k~~~~p~rP~vaIlGGaKVsdKI~v--i~~Ll~kvD~lliGG~ma~tFl~A 308 (481)
T PLN03034 241 -----FLK--PSV--AGFL-LQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGV--IESLLEKCDILLLGGGMIFTFYKA 308 (481)
T ss_pred -----hcC--cch--hhHH-HHHHHHHHHHHHcCCCCceEEEEcCccHHhHHHH--HHHHHHhcCEEEECcHHHHHHHHH
Confidence 000 000 0111 011233333333221111 2222 377776655 7888888999999833 3
Q ss_pred ccccCCC----CCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHH
Q 010211 341 LGAELPI----EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPL 416 (515)
Q Consensus 341 Lg~elg~----e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPv 416 (515)
+|.++|. ++....-++|++++++.|+.+++-....-.=.......+ ...++ ..+-+ |...|- +|.
T Consensus 309 ~G~~IG~slvE~d~i~~A~~il~~a~~~gv~I~lPvD~v~a~~~~~~~~~-~~~~~-~~Ip~--~~~~lD----IGp--- 377 (481)
T PLN03034 309 QGLSVGSSLVEEDKLELATSLLAKAKAKGVSLLLPTDVVIADKFAPDANS-KIVPA-SAIPD--GWMGLD----IGP--- 377 (481)
T ss_pred cCCCcchhhcChhhhHHHHHHHHHHHhcCCEEECCceEEEecccCCCCCe-EEeeh-hcCCC--CCEEEe----cCH---
Confidence 5666664 356667789999999999987653222211000111111 11111 22322 233343 565
Q ss_pred HHHHHHHHHHHHHhcCCCCCCC--C-----CCHHHHHHHHhHH---hhccC--CChHHHHHHHhcCCCC
Q 010211 417 KAVKVMHTVALRTESSLPVSIT--P-----PTQFSAHKNRIHG---SNFKS--LSAFINNLCLHKSLWH 473 (515)
Q Consensus 417 eaV~~m~~I~~~aE~~~~~~~~--~-----~~~~~~ia~~a~a---~~v~t--~sG~tA~~iS~~RP~~ 473 (515)
++++...+++.++...+|.-.+ + ..-+.+++.+.+. ...+| --|.|+..+.+|-..-
T Consensus 378 ~Ti~~~~~~i~~akTI~WNGPmGvFE~~~Fa~GT~~l~~aia~~~~~~a~sIvGGGDt~aAi~~~g~~~ 446 (481)
T PLN03034 378 DSVKTFNEALDTTQTVIWNGPMGVFEFEKFAVGTEAVAKKLAELSGKGVTTIIGGGDSVAAVEKVGVAD 446 (481)
T ss_pred HHHHHHHHHHhhCCEEEEECCcccccCCcchHHHHHHHHHHHHhhcCCCeEEEcCcHHHHHHHHcCCcc
Confidence 8899999999999998886433 1 1223333333221 11222 3467777777765443
No 89
>PLN02334 ribulose-phosphate 3-epimerase
Probab=87.08 E-value=19 Score=35.54 Aligned_cols=141 Identities=10% Similarity=0.124 Sum_probs=78.4
Q ss_pred HhhcchhcCCcEEEecccC-CHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh--cCeeEEcCCcccccCCCC
Q 010211 272 DIKFGVDNQVDFYAVSFVK-DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA--SDGAMVARGDLGAELPIE 348 (515)
Q Consensus 272 dI~~al~~gvD~ValSfVr-sa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~--sDgImIgrgDLg~elg~e 348 (515)
.+..+.+.|+|+|.+-.-+ .-......-+.+...|..+.+...=.| -++.+.+++.. +|.|.+++-.=+.. + .
T Consensus 80 ~~~~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~~iGls~~~~t--~~~~~~~~~~~~~~Dyi~~~~v~pg~~-~-~ 155 (229)
T PLN02334 80 YVPDFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKAGVVLNPGT--PVEAVEPVVEKGLVDMVLVMSVEPGFG-G-Q 155 (229)
T ss_pred HHHHHHHcCCCEEEEeeccccchhHHHHHHHHHHCCCeEEEEECCCC--CHHHHHHHHhccCCCEEEEEEEecCCC-c-c
Confidence 3455577899999765432 122333333334444554555443223 35567788888 99998865432222 1 2
Q ss_pred CH-HHHHHHHHHHHHh-cCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHHHHH
Q 010211 349 DV-PLLQEDIIRRCRS-MQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVA 426 (515)
Q Consensus 349 ~v-~~aqk~Ii~~c~~-aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~I~ 426 (515)
.. +...+++-+..+. .++|+.+.. .- +.. .+......|+|++...+.-..-+-|.++++.+.+..
T Consensus 156 ~~~~~~~~~i~~~~~~~~~~~I~a~G--------GI--~~e---~i~~l~~aGad~vvvgsai~~~~d~~~~~~~l~~~~ 222 (229)
T PLN02334 156 SFIPSMMDKVRALRKKYPELDIEVDG--------GV--GPS---TIDKAAEAGANVIVAGSAVFGAPDYAEVISGLRASV 222 (229)
T ss_pred ccCHHHHHHHHHHHHhCCCCcEEEeC--------CC--CHH---HHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHH
Confidence 12 2233333332222 246765531 22 222 445678889999988765444457999999888776
Q ss_pred HHH
Q 010211 427 LRT 429 (515)
Q Consensus 427 ~~a 429 (515)
.++
T Consensus 223 ~~~ 225 (229)
T PLN02334 223 EKA 225 (229)
T ss_pred HHh
Confidence 654
No 90
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=87.03 E-value=7.4 Score=43.16 Aligned_cols=126 Identities=16% Similarity=0.164 Sum_probs=80.2
Q ss_pred CCHhhHHHhhcchhcCCcEEEe--cccCCHHHHHHHHHHHHhcCCCceEEEE-ecChhhhhcHHHHHhhcCeeEEcC--C
Q 010211 265 ITDKDWEDIKFGVDNQVDFYAV--SFVKDAKVVHELKDYLKSCNADIHVIVK-IESADSIPNLHSIISASDGAMVAR--G 339 (515)
Q Consensus 265 ltekD~~dI~~al~~gvD~Val--SfVrsa~dv~~vr~~l~~~~~~i~IIaK-IEt~~aveNldeIl~~sDgImIgr--g 339 (515)
+.+++.+.++.-++.|+|.|++ +.-++ +.+.++-+.+++...++.||+= +-|.++..++.+ .=+|+|=||= |
T Consensus 222 ~~~~~~~ra~~Lv~aGVd~i~~D~a~g~~-~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~--~G~d~i~vg~g~G 298 (475)
T TIGR01303 222 INGDVGGKAKALLDAGVDVLVIDTAHGHQ-VKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLE--AGANIIKVGVGPG 298 (475)
T ss_pred eCccHHHHHHHHHHhCCCEEEEeCCCCCc-HHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHH--hCCCEEEECCcCC
Confidence 3455556666667889999886 33233 4444445556655557888885 778877766543 1288887552 2
Q ss_pred cccc-----cCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 340 DLGA-----ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 340 DLg~-----elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
=-.. ..|.+ -..+.-+..+.+++.|+|+|- ..+..+ -.|++.|+..|+|++|+.
T Consensus 299 s~~ttr~~~~~g~~-~~~a~~~~~~~~~~~~~~via---------dGgi~~---~~di~kala~GA~~vm~g 357 (475)
T TIGR01303 299 AMCTTRMMTGVGRP-QFSAVLECAAEARKLGGHVWA---------DGGVRH---PRDVALALAAGASNVMVG 357 (475)
T ss_pred ccccCccccCCCCc-hHHHHHHHHHHHHHcCCcEEE---------eCCCCC---HHHHHHHHHcCCCEEeec
Confidence 2111 11223 233445666677888999886 445554 358899999999999985
No 91
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=86.72 E-value=15 Score=35.62 Aligned_cols=129 Identities=16% Similarity=0.164 Sum_probs=71.5
Q ss_pred HhhcchhcCCcEEEeccc-CCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCC
Q 010211 272 DIKFGVDNQVDFYAVSFV-KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIED 349 (515)
Q Consensus 272 dI~~al~~gvD~ValSfV-rsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e~ 349 (515)
.++.+.+.|+|+|.+.-. ...+++.++.++....+ +.+++-+-+. +.+.++.+. +|.+.+..-|.... + .+
T Consensus 86 ~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g--~~~~v~v~~~---~e~~~~~~~g~~~i~~t~~~~~~~-~-~~ 158 (217)
T cd00331 86 QIYEARAAGADAVLLIVAALDDEQLKELYELARELG--MEVLVEVHDE---EELERALALGAKIIGINNRDLKTF-E-VD 158 (217)
T ss_pred HHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcC--CeEEEEECCH---HHHHHHHHcCCCEEEEeCCCcccc-C-cC
Confidence 566777899999985421 11233434333333333 3344444433 334555544 78898886665432 2 23
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHH
Q 010211 350 VPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKV 421 (515)
Q Consensus 350 v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~ 421 (515)
+ ...+++.+... .++|++.. .+.-+.. |+..+...|+|++++.+.-.....|.++++.
T Consensus 159 ~-~~~~~l~~~~~-~~~pvia~---------gGI~s~e---di~~~~~~Ga~gvivGsai~~~~~p~~~~~~ 216 (217)
T cd00331 159 L-NTTERLAPLIP-KDVILVSE---------SGISTPE---DVKRLAEAGADAVLIGESLMRAPDPGAALRE 216 (217)
T ss_pred H-HHHHHHHHhCC-CCCEEEEE---------cCCCCHH---HHHHHHHcCCCEEEECHHHcCCCCHHHHHHh
Confidence 3 22233322211 46788763 3444433 4556677799999987665566678777653
No 92
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=86.59 E-value=14 Score=39.84 Aligned_cols=103 Identities=18% Similarity=0.192 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-----cCeeEE-----cCC--c---------cc--ccC--
Q 010211 291 DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-----SDGAMV-----ARG--D---------LG--AEL-- 345 (515)
Q Consensus 291 sa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-----sDgImI-----grg--D---------Lg--~el-- 345 (515)
.++.+.++-+.+.+. -+++|++||= + .+.++.+|++. +|||.+ +|- | |. ...
T Consensus 152 ~~~~~~~i~~~v~~~-~~~Pv~vKl~-p-~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg 228 (420)
T PRK08318 152 VPELVEMYTRWVKRG-SRLPVIVKLT-P-NITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGG 228 (420)
T ss_pred CHHHHHHHHHHHHhc-cCCcEEEEcC-C-CcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCccc
Confidence 334444444444332 3589999994 3 45667777664 799883 221 1 10 011
Q ss_pred --CCCCHHHHHHHHHHHHHhc---CCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeeccc
Q 010211 346 --PIEDVPLLQEDIIRRCRSM---QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGE 408 (515)
Q Consensus 346 --g~e~v~~aqk~Ii~~c~~a---GKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~E 408 (515)
|....+...+.|-+..++. +.|+|-. .+.-+ ..|+..++..|+|+||+...
T Consensus 229 ~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~---------GGI~s---~~da~e~i~aGA~~Vqi~ta 284 (420)
T PRK08318 229 YCGPAVKPIALNMVAEIARDPETRGLPISGI---------GGIET---WRDAAEFILLGAGTVQVCTA 284 (420)
T ss_pred ccchhhhHHHHHHHHHHHhccccCCCCEEee---------cCcCC---HHHHHHHHHhCCChheeeee
Confidence 2234555666666666655 5677652 23333 34788999999999999733
No 93
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=86.28 E-value=32 Score=32.98 Aligned_cols=136 Identities=15% Similarity=0.144 Sum_probs=74.4
Q ss_pred HhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecCh-hhhhcHHHHHhh-cCeeEEcCCcccccCCCCC
Q 010211 272 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESA-DSIPNLHSIISA-SDGAMVARGDLGAELPIED 349 (515)
Q Consensus 272 dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~-~aveNldeIl~~-sDgImIgrgDLg~elg~e~ 349 (515)
.++.+.+.|+|+|.+.+......+.++.++.++.| +.+++-+-++ +-.+.+....+. +|.+-+.||-=+...+...
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g--~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~ 145 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADDATIKGAVKAAKKHG--KEVQVDLINVKDKVKRAKELKELGADYIGVHTGLDEQAKGQNP 145 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcC--CEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCcCcccCCCCC
Confidence 45667789999998877655445666777776654 5555543232 223334444553 8988887753222232222
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHHHH
Q 010211 350 VPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTV 425 (515)
Q Consensus 350 v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~I 425 (515)
+ +++-+..+....+.+.++ +--+.. .+..++..|+|++.+.+.--.-+-|.++++.+.++
T Consensus 146 ~----~~i~~l~~~~~~~~i~v~---------GGI~~~---n~~~~~~~Ga~~v~vGsai~~~~d~~~~~~~l~~~ 205 (206)
T TIGR03128 146 F----EDLQTILKLVKEARVAVA---------GGINLD---TIPDVIKLGPDIVIVGGAITKAADPAEAARQIRKL 205 (206)
T ss_pred H----HHHHHHHHhcCCCcEEEE---------CCcCHH---HHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHHhh
Confidence 2 122222222223444322 222332 34466788999988754433334588888877654
No 94
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=86.14 E-value=1.4 Score=51.31 Aligned_cols=122 Identities=16% Similarity=0.154 Sum_probs=84.7
Q ss_pred eccCceeeeCCCccCCCCCCHhhHHHhhcch----hcCCcE---EEecccCCHHHHHHHHHHHHhcCCC------ceEEE
Q 010211 247 LKSRRHLNVRGKSANLPSITDKDWEDIKFGV----DNQVDF---YAVSFVKDAKVVHELKDYLKSCNAD------IHVIV 313 (515)
Q Consensus 247 L~s~KgVnlpg~~~~lp~ltekD~~dI~~al----~~gvD~---ValSfVrsa~dv~~vr~~l~~~~~~------i~IIa 313 (515)
|.+++.+--|+.. ....|.+.++-.+.+. +.|.|. ..+|+.++++|+.++.=++++.|-- +.|+.
T Consensus 447 L~s~RPL~p~~~~--~Se~t~~~L~t~r~a~~~~~~~G~~~i~~yIISma~s~SDvLev~lLlKE~Gl~~~~~~~v~VvP 524 (910)
T COG2352 447 LSSRRPLLPPFWQ--PSEETREELATFRVAAEAKDEFGEDAIGAYIISMAESVSDVLEVLLLLKEAGLVDPERARVPVVP 524 (910)
T ss_pred hcCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCCHHHHHHHHHHHHHhCCCCccCCcccccc
Confidence 4454444444432 2334444444333222 234443 4569999999999998888888744 88999
Q ss_pred EecChhhhhcHHHHHhh------cC----------eeEEcCCcccccCCC----CCHHHHHHHHHHHHHhcCCcEEE
Q 010211 314 KIESADSIPNLHSIISA------SD----------GAMVARGDLGAELPI----EDVPLLQEDIIRRCRSMQKPVIV 370 (515)
Q Consensus 314 KIEt~~aveNldeIl~~------sD----------gImIgrgDLg~elg~----e~v~~aqk~Ii~~c~~aGKPviv 370 (515)
--||.+-++|-+.|+.. .+ -||+|=.|=.-+=|+ -.+..+|+.+++.|+++|+-.=.
T Consensus 525 LFETieDL~na~~vm~~ll~l~~yR~~l~~~~n~QEVMlGYSDSnKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~Lrl 601 (910)
T COG2352 525 LFETIEDLDNAPDVMTQLLNLPLYRALLAGRGNVQEVMLGYSDSNKDGGYLAANWALYKAQLALVELCEKAGVELRL 601 (910)
T ss_pred ccccHHHHhccHHHHHHHHcChHHHHHHcCCCCceEEEecccccccccchhhhHHHHHHHHHHHHHHHHHhCceEEE
Confidence 99999999999999884 12 367766665555555 36888999999999999988754
No 95
>PRK00915 2-isopropylmalate synthase; Validated
Probab=85.76 E-value=25 Score=39.29 Aligned_cols=152 Identities=16% Similarity=0.173 Sum_probs=99.8
Q ss_pred CCHhhHHHhhc-chhcCCcEEEecc-cCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh---c----CeeE
Q 010211 265 ITDKDWEDIKF-GVDNQVDFYAVSF-VKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA---S----DGAM 335 (515)
Q Consensus 265 ltekD~~dI~~-al~~gvD~ValSf-Vrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~---s----DgIm 335 (515)
+|..|+..|.. -.+.|+|.|=+.| ..++.|...++.+.. ...+..+.+-.-.. .+.+|..++. + =.++
T Consensus 23 ~s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~~d~~~v~~i~~-~~~~~~i~a~~r~~--~~did~a~~a~~~~~~~~v~i~ 99 (513)
T PRK00915 23 LTVEEKLQIAKQLERLGVDVIEAGFPASSPGDFEAVKRIAR-TVKNSTVCGLARAV--KKDIDAAAEALKPAEAPRIHTF 99 (513)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCChHHHHHHHHHHh-hCCCCEEEEEccCC--HHHHHHHHHHhhcCCCCEEEEE
Confidence 46777765644 4567999998876 567788877766554 34556666655332 3345554432 1 1356
Q ss_pred EcCCccccc----CCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHH---HhHHHHH-HHhCCcEEeecc
Q 010211 336 VARGDLGAE----LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE---VSDIAIA-VREGADAVMLSG 407 (515)
Q Consensus 336 IgrgDLg~e----lg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAE---v~Dvana-V~~G~D~vmLs~ 407 (515)
++-.|+-.. ...+++.....+.++.|+++|..|.+.. ..-+|++ +.+++.+ ...|+|.+-|.
T Consensus 100 ~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~---------ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~- 169 (513)
T PRK00915 100 IATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSA---------EDATRTDLDFLCRVVEAAIDAGATTINIP- 169 (513)
T ss_pred ECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEe---------CCCCCCCHHHHHHHHHHHHHcCCCEEEEc-
Confidence 666666332 2336777778899999999999887632 2333333 5555544 45699999885
Q ss_pred cccCCCCHHHHHHHHHHHHHHH
Q 010211 408 ETAHGKFPLKAVKVMHTVALRT 429 (515)
Q Consensus 408 ETa~G~yPveaV~~m~~I~~~a 429 (515)
+|.=+..|.+.-+.+..+.+..
T Consensus 170 DTvG~~~P~~~~~~i~~l~~~~ 191 (513)
T PRK00915 170 DTVGYTTPEEFGELIKTLRERV 191 (513)
T ss_pred cCCCCCCHHHHHHHHHHHHHhC
Confidence 8988899999988888887654
No 96
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=85.74 E-value=17 Score=34.89 Aligned_cols=103 Identities=13% Similarity=0.179 Sum_probs=67.1
Q ss_pred HHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEE-EecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCC
Q 010211 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISA-SDGAMVARGDLGAELPIE 348 (515)
Q Consensus 271 ~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIa-KIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e 348 (515)
+.++..++.|++.|-+.+ ++......++.+-+..+ +..+-+ -|=|. +++++.+.. +|+++.+-.|
T Consensus 20 ~~~~~l~~~G~~~vev~~-~~~~~~~~i~~l~~~~~-~~~iGag~v~~~---~~~~~a~~~Ga~~i~~p~~~-------- 86 (190)
T cd00452 20 ALAEALIEGGIRAIEITL-RTPGALEAIRALRKEFP-EALIGAGTVLTP---EQADAAIAAGAQFIVSPGLD-------- 86 (190)
T ss_pred HHHHHHHHCCCCEEEEeC-CChhHHHHHHHHHHHCC-CCEEEEEeCCCH---HHHHHHHHcCCCEEEcCCCC--------
Confidence 444666788999999985 67766666666554443 333332 22233 455666666 8999754222
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 349 DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 349 ~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
..+++.|+..|.+++. ... |.. ++..+...|+|.+.+.
T Consensus 87 ------~~~~~~~~~~~~~~i~---------gv~--t~~---e~~~A~~~Gad~i~~~ 124 (190)
T cd00452 87 ------PEVVKAANRAGIPLLP---------GVA--TPT---EIMQALELGADIVKLF 124 (190)
T ss_pred ------HHHHHHHHHcCCcEEC---------CcC--CHH---HHHHHHHCCCCEEEEc
Confidence 3688899999999775 112 333 4557788999999984
No 97
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=85.73 E-value=9.5 Score=40.62 Aligned_cols=132 Identities=17% Similarity=0.249 Sum_probs=85.4
Q ss_pred HhhHHHhhcchhcCCcEEEecccCCHHHHHHHHHH----------------HHhcCCCceEEEEecChhhhhcHHHHHhh
Q 010211 267 DKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDY----------------LKSCNADIHVIVKIESADSIPNLHSIISA 330 (515)
Q Consensus 267 ekD~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~----------------l~~~~~~i~IIaKIEt~~aveNldeIl~~ 330 (515)
+.+++.+..|++.|+|+|.+. .+++..++++ +...+.....+.+|.+++-.+.+.+....
T Consensus 13 ~~~k~~vt~AlEsGv~~vvv~----~~~~~~v~~lg~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~e~~a~~~~~~ 88 (344)
T PRK02290 13 EERKEVVTTALESGVDGVVVD----EEDVERVRELGRIKVAADDPDADAVVISGSAGEDGAYVEIRDKEDEEFAAELAKE 88 (344)
T ss_pred hhHHHHHHHHHHcCCCEEEEC----HHHhHHHHhhCCeeEEEEcCCcchhhhcccCCceEEEEEECCHHHHHHHHHhhcc
Confidence 677888899999999998664 3555554442 12234467788899999999999988888
Q ss_pred cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeeccccc
Q 010211 331 SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETA 410 (515)
Q Consensus 331 sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa 410 (515)
.|-++|---|-. -+|+|. +|++..+.++ ++. ....+ .|..-.+..+..|+|+|+|..+.
T Consensus 89 ~~~viv~~~dW~-iIPlEn-------lIA~~~~~~~-l~a---------~v~~~--~eA~~a~~~LE~G~dGVvl~~~d- 147 (344)
T PRK02290 89 VDYVIVEGRDWT-IIPLEN-------LIADLGQSGK-IIA---------GVADA--EEAKLALEILEKGVDGVLLDPDD- 147 (344)
T ss_pred CCEEEEECCCCc-EecHHH-------HHhhhcCCce-EEE---------EeCCH--HHHHHHHHHhccCCCeEEECCCC-
Confidence 888888544432 234444 3444433333 332 11233 45556688999999999998553
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 010211 411 HGKFPLKAVKVMHTVALR 428 (515)
Q Consensus 411 ~G~yPveaV~~m~~I~~~ 428 (515)
| ..++-+...+.+
T Consensus 148 ----~-~ei~~~~~~~~~ 160 (344)
T PRK02290 148 ----P-NEIKAIVALIEE 160 (344)
T ss_pred ----H-HHHHHHHHHHhc
Confidence 3 455555555554
No 98
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=85.59 E-value=9 Score=37.22 Aligned_cols=132 Identities=11% Similarity=0.093 Sum_probs=72.4
Q ss_pred hcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHH----HHHhh-----cCeeEEcCCccccc
Q 010211 274 KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLH----SIISA-----SDGAMVARGDLGAE 344 (515)
Q Consensus 274 ~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNld----eIl~~-----sDgImIgrgDLg~e 344 (515)
+.+.+.|+|+|.+.+--..+.+..+.+++++.|..+.+..+.+++++++.+. .++.. .||..+
T Consensus 74 ~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~g~~~-------- 145 (215)
T PRK13813 74 EAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGALEFIQPHADKLAKLAQEAGAFGVVA-------- 145 (215)
T ss_pred HHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCCeEEE--------
Confidence 4455789999998875444557677777777777777777777776666433 33322 233332
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHHH
Q 010211 345 LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHT 424 (515)
Q Consensus 345 lg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~ 424 (515)
+...+ .-.+++-+ ..+.++.+.+ -.-.+. -..+..++..|+|.+.+..---...-|.++++.|++
T Consensus 146 -~~~~~-~~i~~l~~---~~~~~~~ivd-------gGI~~~---g~~~~~~~~aGad~iV~Gr~I~~~~d~~~~~~~l~~ 210 (215)
T PRK13813 146 -PATRP-ERVRYIRS---RLGDELKIIS-------PGIGAQ---GGKAADAIKAGADYVIVGRSIYNAADPREAAKAINE 210 (215)
T ss_pred -CCCcc-hhHHHHHH---hcCCCcEEEe-------CCcCCC---CCCHHHHHHcCCCEEEECcccCCCCCHHHHHHHHHH
Confidence 22221 11122222 2222221111 111111 112446777899998876433334459999999987
Q ss_pred HHHH
Q 010211 425 VALR 428 (515)
Q Consensus 425 I~~~ 428 (515)
..++
T Consensus 211 ~~~~ 214 (215)
T PRK13813 211 EIRG 214 (215)
T ss_pred HHhc
Confidence 6644
No 99
>PF00311 PEPcase: Phosphoenolpyruvate carboxylase; InterPro: IPR021135 Phosphoenolpyruvate carboxylase (PEPCase), an enzyme found in all multicellular plants, catalyses the formation of oxaloacetate from phosphoenolpyruvate (PEP) and a hydrocarbonate ion []. This reaction is harnessed by C4 plants to capture and concentrate carbon dioxide into the photosynthetic bundle sheath cells. It also plays a key role in the nitrogen fixation pathway in legume root nodules: here it functions in concert with glutamine, glutamate and asparagine synthetases and aspartate amido transferase, to synthesise aspartate and asparagine, the major nitrogen transport compounds in various amine-transporting plant species []. PEPCase also plays an antipleurotic role in bacteria and plant cells, supplying oxaloacetate to the TCA cycle, which requires continuous input of C4 molecules in order to replenish the intermediates removed for amino acid biosynthesis []. The C terminus of the enzyme contains the active site that includes a conserved lysine residue, involved in substrate binding, and other conserved residues important for the catalytic mechanism []. Based on sequence similarity, PEPCase enzymes can be grouped into two distinct families, one found primarily in bacteria and plants, and another found primarily in archaea.; GO: 0008964 phosphoenolpyruvate carboxylase activity, 0006099 tricarboxylic acid cycle, 0015977 carbon fixation; PDB: 1JQO_A 1QB4_A 1JQN_A 1FIY_A.
Probab=85.44 E-value=2 Score=50.47 Aligned_cols=92 Identities=17% Similarity=0.170 Sum_probs=68.9
Q ss_pred CCcEEEecccCCHHHHHHHHHHHHhcCC--------CceEEEEecChhhhhcHHHHHhh----------------cCeeE
Q 010211 280 QVDFYAVSFVKDAKVVHELKDYLKSCNA--------DIHVIVKIESADSIPNLHSIISA----------------SDGAM 335 (515)
Q Consensus 280 gvD~ValSfVrsa~dv~~vr~~l~~~~~--------~i~IIaKIEt~~aveNldeIl~~----------------sDgIm 335 (515)
.+.-+.+|+.+++.|+.++--+.++.|- .+.|+.-.||.+.++|..+|++. .--||
T Consensus 363 ~~~~yIISmt~~~sdvL~v~~L~k~~gl~~~~~~~~~l~vvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~~~~QeVM 442 (794)
T PF00311_consen 363 AIGRYIISMTESASDVLEVLLLAKEAGLADGGDGGCRLDVVPLFETIDDLENAPDIMEELLSNPAYRAHLKARGNRQEVM 442 (794)
T ss_dssp CEEEEEECT--SCHHHHHHHHHHHCTT---SS---S---EEEEE-SHHHHHCHHHHHHHHCCSHHHHHHCTT---EEEEE
T ss_pred hHHHheeeCCCChHHHHHHHHHHHHhCCCcccccccccCCCCCCCCHHHHHhHHHHHHHHHcCHHHHHHHhcCcceEEEE
Confidence 3445678999999999998777766653 47899999999999999999985 13689
Q ss_pred EcCCcccccCCC----CCHHHHHHHHHHHHHhcCCcEEEE
Q 010211 336 VARGDLGAELPI----EDVPLLQEDIIRRCRSMQKPVIVA 371 (515)
Q Consensus 336 IgrgDLg~elg~----e~v~~aqk~Ii~~c~~aGKPvivA 371 (515)
+|-.|=+=+-|+ -.+..+|+++.+.|+++|+.+.+.
T Consensus 443 lGYSDS~KDgG~laa~w~ly~Aq~~L~~v~~~~gV~l~~F 482 (794)
T PF00311_consen 443 LGYSDSNKDGGYLAANWALYKAQEALVAVARKHGVKLRFF 482 (794)
T ss_dssp EECCCHHHHC-HHHHHHHHHHHHHHHHHHHHCCT-EEEEE
T ss_pred eccccccccccHHHHHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 988877766665 468999999999999999998764
No 100
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=85.43 E-value=3.6 Score=44.77 Aligned_cols=123 Identities=22% Similarity=0.293 Sum_probs=82.9
Q ss_pred HhhHHHhhcchhcCCcEEEecc--cCCHHHHHHHHHHHHhcCCCceEEE-EecChhhhhcHHHHHhhcCeeEEcCCcccc
Q 010211 267 DKDWEDIKFGVDNQVDFYAVSF--VKDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISASDGAMVARGDLGA 343 (515)
Q Consensus 267 ekD~~dI~~al~~gvD~ValSf--Vrsa~dv~~vr~~l~~~~~~i~IIa-KIEt~~aveNldeIl~~sDgImIgrgDLg~ 343 (515)
+.|+..+..-++.|+|+|.+-- -.|.-++ +.-+|+++.-.+..||+ .+=|.+=.+|| |.+-+||+=||=|-=++
T Consensus 250 e~dK~rl~ll~~aGvdvviLDSSqGnS~~qi-emik~iK~~yP~l~ViaGNVVT~~qa~nL--I~aGaDgLrVGMGsGSi 326 (503)
T KOG2550|consen 250 DDDKERLDLLVQAGVDVVILDSSQGNSIYQL-EMIKYIKETYPDLQIIAGNVVTKEQAANL--IAAGADGLRVGMGSGSI 326 (503)
T ss_pred cchhHHHHHhhhcCCcEEEEecCCCcchhHH-HHHHHHHhhCCCceeeccceeeHHHHHHH--HHccCceeEeccccCce
Confidence 5677778777889999998732 2233333 34578888888888887 56666555554 44459999998554333
Q ss_pred cC-------CCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEee
Q 010211 344 EL-------PIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 405 (515)
Q Consensus 344 el-------g~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmL 405 (515)
-+ |.+. .-+.-++.+.|++.|.|||- ..+.- .+-+++.|+..|++.||+
T Consensus 327 CiTqevma~GrpQ-~TAVy~va~~A~q~gvpviA---------DGGiq---~~Ghi~KAl~lGAstVMm 382 (503)
T KOG2550|consen 327 CITQKVMACGRPQ-GTAVYKVAEFANQFGVPCIA---------DGGIQ---NVGHVVKALGLGASTVMM 382 (503)
T ss_pred eeeceeeeccCCc-ccchhhHHHHHHhcCCceee---------cCCcC---ccchhHhhhhcCchhhee
Confidence 22 2222 22445678899999999986 33332 366788999999999986
No 101
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=85.29 E-value=34 Score=36.44 Aligned_cols=155 Identities=12% Similarity=0.090 Sum_probs=97.0
Q ss_pred CCHhhHHHhh-cchhcCCcEEEecc-cCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEE--cCC
Q 010211 265 ITDKDWEDIK-FGVDNQVDFYAVSF-VKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMV--ARG 339 (515)
Q Consensus 265 ltekD~~dI~-~al~~gvD~ValSf-Vrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImI--grg 339 (515)
++.+|+..|. .-.+.|+|.|=+.| +.+.++...++...+ .+.+..+.+.+-. -.+.++..++. +|.|.+ +-.
T Consensus 19 ~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~-~~~~~~v~~~~r~--~~~di~~a~~~g~~~i~i~~~~S 95 (363)
T TIGR02090 19 LTVEQKVEIARKLDELGVDVIEAGFPIASEGEFEAIKKISQ-EGLNAEICSLARA--LKKDIDKAIDCGVDSIHTFIATS 95 (363)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHh-cCCCcEEEEEccc--CHHHHHHHHHcCcCEEEEEEcCC
Confidence 4667775554 44567999987754 566677666666554 3556666665532 12334444444 565544 434
Q ss_pred cccc----cCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHH-HHHhCCcEEeecccccCCCC
Q 010211 340 DLGA----ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAVMLSGETAHGKF 414 (515)
Q Consensus 340 DLg~----elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~Dvan-aV~~G~D~vmLs~ETa~G~y 414 (515)
|+-. .+..+++.....+.++.|+++|..|.+.. ....+-+...+.+++. +...|+|.+.|. +|.=..+
T Consensus 96 d~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~------eda~r~~~~~l~~~~~~~~~~g~~~i~l~-DT~G~~~ 168 (363)
T TIGR02090 96 PIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSA------EDATRTDIDFLIKVFKRAEEAGADRINIA-DTVGVLT 168 (363)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEE------eecCCCCHHHHHHHHHHHHhCCCCEEEEe-CCCCccC
Confidence 4322 12335567777889999999999886642 1223334444555444 466799999986 7887889
Q ss_pred HHHHHHHHHHHHHHH
Q 010211 415 PLKAVKVMHTVALRT 429 (515)
Q Consensus 415 PveaV~~m~~I~~~a 429 (515)
|.+.-+.+..+....
T Consensus 169 P~~v~~li~~l~~~~ 183 (363)
T TIGR02090 169 PQKMEELIKKLKENV 183 (363)
T ss_pred HHHHHHHHHHHhccc
Confidence 999888888876554
No 102
>PRK15452 putative protease; Provisional
Probab=85.20 E-value=3.6 Score=45.19 Aligned_cols=91 Identities=9% Similarity=0.124 Sum_probs=55.8
Q ss_pred hhHHHhhcchhcCCcEEEecc---cC-------CHHHHHHHHHHHHhcCCCceEEEE-ecChhhhhcHHHHH----hh-c
Q 010211 268 KDWEDIKFGVDNQVDFYAVSF---VK-------DAKVVHELKDYLKSCNADIHVIVK-IESADSIPNLHSII----SA-S 331 (515)
Q Consensus 268 kD~~dI~~al~~gvD~ValSf---Vr-------sa~dv~~vr~~l~~~~~~i~IIaK-IEt~~aveNldeIl----~~-s 331 (515)
.+.+.++.|+++|+|.|-+++ -- +.+|+.+..++..+.|.++.+..- |=..+-++.+.+.+ +. +
T Consensus 11 g~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gv 90 (443)
T PRK15452 11 GTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKP 90 (443)
T ss_pred CCHHHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhCCC
Confidence 467888999999999988832 11 337788887888777766554321 22223344444434 33 7
Q ss_pred CeeEEcCCcccccCCCCCHHHHHHHHHHHHHhc--CCcEEEEecc
Q 010211 332 DGAMVARGDLGAELPIEDVPLLQEDIIRRCRSM--QKPVIVATNM 374 (515)
Q Consensus 332 DgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~a--GKPvivATqm 374 (515)
|||+|+ |+ |. +..+++. +.|+...|||
T Consensus 91 DgvIV~--d~----G~----------l~~~ke~~p~l~ih~stql 119 (443)
T PRK15452 91 DALIMS--DP----GL----------IMMVREHFPEMPIHLSVQA 119 (443)
T ss_pred CEEEEc--CH----HH----------HHHHHHhCCCCeEEEEecc
Confidence 999996 33 31 1222332 6788888876
No 103
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=85.10 E-value=18 Score=36.72 Aligned_cols=126 Identities=19% Similarity=0.229 Sum_probs=70.8
Q ss_pred hhH-HHhhcchhcCCcEEEeccc-----------CCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-----
Q 010211 268 KDW-EDIKFGVDNQVDFYAVSFV-----------KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----- 330 (515)
Q Consensus 268 kD~-~dI~~al~~gvD~ValSfV-----------rsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~----- 330 (515)
.|. +.++.+.+.|+|+|-+.+- ++.+.+.++-+.+++.- ++.|++|+-.....+++.++++.
T Consensus 111 ~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~~~a~~l~~~G 189 (289)
T cd02810 111 EDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV-DIPLLVKLSPYFDLEDIVELAKAAERAG 189 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc-CCCEEEEeCCCCCHHHHHHHHHHHHHcC
Confidence 444 4445666779999877532 23344444444444322 57899999875554455566553
Q ss_pred cCeeEEcCCccc--cc------------CCC---CCHHHHHHHHHHHHHhc--CCcEEEEeccccccccCCCcChHHHhH
Q 010211 331 SDGAMVARGDLG--AE------------LPI---EDVPLLQEDIIRRCRSM--QKPVIVATNMLESMIDHPTPTRAEVSD 391 (515)
Q Consensus 331 sDgImIgrgDLg--~e------------lg~---e~v~~aqk~Ii~~c~~a--GKPvivATqmLeSMi~~~~PtrAEv~D 391 (515)
+|+|.+.-+-.+ .. -|+ +-.+...+.+-+..+.. ++|++... +.-+. .|
T Consensus 190 ad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~G---------GI~~~---~d 257 (289)
T cd02810 190 ADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVG---------GIDSG---ED 257 (289)
T ss_pred CCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEEC---------CCCCH---HH
Confidence 699987422111 00 011 11222344444444455 68887743 33332 46
Q ss_pred HHHHHHhCCcEEeec
Q 010211 392 IAIAVREGADAVMLS 406 (515)
Q Consensus 392 vanaV~~G~D~vmLs 406 (515)
+..++..|+|+|++.
T Consensus 258 a~~~l~~GAd~V~vg 272 (289)
T cd02810 258 VLEMLMAGASAVQVA 272 (289)
T ss_pred HHHHHHcCccHheEc
Confidence 778888999999986
No 104
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=84.94 E-value=22 Score=34.73 Aligned_cols=129 Identities=16% Similarity=0.127 Sum_probs=67.9
Q ss_pred hHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEE-Ee------------c-ChhhhhcHHHHHhh-cCe
Q 010211 269 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIV-KI------------E-SADSIPNLHSIISA-SDG 333 (515)
Q Consensus 269 D~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIa-KI------------E-t~~aveNldeIl~~-sDg 333 (515)
+.++++..++.|+|.|.++.. ..++...+++..+..+.+-.+++ .+ . ..+.++-++...+. +|+
T Consensus 84 ~~e~~~~~~~~Gad~vvigs~-~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~ 162 (234)
T cd04732 84 SLEDIERLLDLGVSRVIIGTA-AVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKA 162 (234)
T ss_pred CHHHHHHHHHcCCCEEEECch-HHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCE
Confidence 355666666789999887642 23444445555555554222222 11 0 11122223333333 788
Q ss_pred eEEcCCcccc---cCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeeccccc
Q 010211 334 AMVARGDLGA---ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETA 410 (515)
Q Consensus 334 ImIgrgDLg~---elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa 410 (515)
+.+- |+.. .-| .. ....++ .++....|++.+ .+.-+..+ +..+...|+|++|+..---
T Consensus 163 iii~--~~~~~g~~~g-~~-~~~i~~---i~~~~~ipvi~~---------GGi~~~~d---i~~~~~~Ga~gv~vg~~~~ 223 (234)
T cd04732 163 IIYT--DISRDGTLSG-PN-FELYKE---LAAATGIPVIAS---------GGVSSLDD---IKALKELGVAGVIVGKALY 223 (234)
T ss_pred EEEE--eecCCCccCC-CC-HHHHHH---HHHhcCCCEEEe---------cCCCCHHH---HHHHHHCCCCEEEEeHHHH
Confidence 8774 3322 222 22 222233 344568999884 35555444 4455556999999976555
Q ss_pred CCCCHHH
Q 010211 411 HGKFPLK 417 (515)
Q Consensus 411 ~G~yPve 417 (515)
.|+++.+
T Consensus 224 ~~~~~~~ 230 (234)
T cd04732 224 EGKITLE 230 (234)
T ss_pred cCCCCHH
Confidence 6666543
No 105
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=84.41 E-value=18 Score=35.31 Aligned_cols=117 Identities=17% Similarity=0.141 Sum_probs=65.1
Q ss_pred HHHhhcchhcCCcEEEec--ccCCHH--HHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCccccc
Q 010211 270 WEDIKFGVDNQVDFYAVS--FVKDAK--VVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAE 344 (515)
Q Consensus 270 ~~dI~~al~~gvD~ValS--fVrsa~--dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~e 344 (515)
.+.++.+.+.|+|+|.+- ..+.++ .+.++.+.+.+.+ ++.+++.+.|++-. ....+. +|.+.+...++...
T Consensus 82 ~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v~t~~ea---~~a~~~G~d~i~~~~~g~t~~ 157 (219)
T cd04729 82 IEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADISTLEEA---LNAAKLGFDIIGTTLSGYTEE 157 (219)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEECCCHHHH---HHHHHcCCCEEEccCcccccc
Confidence 456777788999987652 222222 5555666666656 67888877665432 222222 78886643322111
Q ss_pred ---CCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 345 ---LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 345 ---lg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
..... ....+++.+ ..++|++.. .+.-+. .++..++..|+|++++.
T Consensus 158 ~~~~~~~~-~~~l~~i~~---~~~ipvia~---------GGI~~~---~~~~~~l~~GadgV~vG 206 (219)
T cd04729 158 TAKTEDPD-FELLKELRK---ALGIPVIAE---------GRINSP---EQAAKALELGADAVVVG 206 (219)
T ss_pred ccCCCCCC-HHHHHHHHH---hcCCCEEEe---------CCCCCH---HHHHHHHHCCCCEEEEc
Confidence 11111 233333332 337998874 333232 35668888999999985
No 106
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=84.19 E-value=7.4 Score=41.58 Aligned_cols=130 Identities=18% Similarity=0.281 Sum_probs=84.0
Q ss_pred HHHhhcchhcCCcEEEecccCCHHHHHHHHHH-------------------------HHhcCCCceEEEEecChhhhhcH
Q 010211 270 WEDIKFGVDNQVDFYAVSFVKDAKVVHELKDY-------------------------LKSCNADIHVIVKIESADSIPNL 324 (515)
Q Consensus 270 ~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~-------------------------l~~~~~~i~IIaKIEt~~aveNl 324 (515)
++.+..|++.|+|.|.++- +++..++++ +...+.++.....|.+++-.+.+
T Consensus 15 k~~vt~AlEsGvd~vv~~~----~~~~~~~~lg~~~vi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~i~~~~~~~~a 90 (354)
T PF01959_consen 15 KEVVTAALESGVDGVVVDD----EDVEKVRELGRIKVIAFDSDGEGDGTDDLPDLKALKAEGKEVGVYVEITDKEDEEEA 90 (354)
T ss_pred HHHHHHHHHcCCCEEEECH----hHhhhhhccceEEEEeccccccCCccccchhhhhhhccCceEEEEEEECCHHHHHHH
Confidence 6777889999999987652 333333321 12334566688899999999888
Q ss_pred HHHHhhcCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEe
Q 010211 325 HSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVM 404 (515)
Q Consensus 325 deIl~~sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vm 404 (515)
-+.....|-+++--.|-.+ +|+|. +|++....+.-++.. ..+-.|..-.+..+..|+|+++
T Consensus 91 ~~~~~~~~~~iv~~~Dw~i-IPlEn-------liA~~~~~~~~i~a~-----------v~~~~eA~~~~~~LE~G~dGVl 151 (354)
T PF01959_consen 91 CELAKRADYVIVEFRDWTI-IPLEN-------LIAALQGSSTKIIAV-----------VADAEEARVALEVLEKGVDGVL 151 (354)
T ss_pred HHHhccCCeEEEEcCCCcE-ecHHH-------HHHHhcCCCceEEEE-----------eCCHHHHHHHHHHHhcCCCeEE
Confidence 8888878888876455432 45444 344444444444441 2344455566889999999999
Q ss_pred ecccccCCCCHHHHHHHHHHHHHH
Q 010211 405 LSGETAHGKFPLKAVKVMHTVALR 428 (515)
Q Consensus 405 Ls~ETa~G~yPveaV~~m~~I~~~ 428 (515)
|..+. | ..++.+...+.+
T Consensus 152 l~~~d-----~-~ei~~~~~~~~~ 169 (354)
T PF01959_consen 152 LDPDD-----P-AEIKALVALLKE 169 (354)
T ss_pred ECCCC-----H-HHHHHHHHHHhh
Confidence 98653 2 455556666665
No 107
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=83.93 E-value=25 Score=35.24 Aligned_cols=100 Identities=19% Similarity=0.284 Sum_probs=56.4
Q ss_pred CCCCCCHhhHHHhhcchhcCCcEEEe--cc---cCCHHHHHHH--------------HHHHHhcC--CCceEEEEec-Ch
Q 010211 261 NLPSITDKDWEDIKFGVDNQVDFYAV--SF---VKDAKVVHEL--------------KDYLKSCN--ADIHVIVKIE-SA 318 (515)
Q Consensus 261 ~lp~ltekD~~dI~~al~~gvD~Val--Sf---Vrsa~dv~~v--------------r~~l~~~~--~~i~IIaKIE-t~ 318 (515)
..|.+ +.-.+.++...+.|+|++=+ || +-+...++.. -+.+++.. .+++++.+.. ++
T Consensus 9 G~P~~-~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~ 87 (242)
T cd04724 9 GDPDL-ETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNP 87 (242)
T ss_pred CCCCH-HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCH
Confidence 44554 23345556666778998655 44 3333344421 12222221 1456666666 43
Q ss_pred ---hhhhcH-HHHHhh-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 010211 319 ---DSIPNL-HSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (515)
Q Consensus 319 ---~aveNl-deIl~~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivA 371 (515)
.|++++ ++..+. +||+.+- || ++ +-.++++++|+++|...+.+
T Consensus 88 ~~~~G~~~fi~~~~~aG~~giiip--Dl----~~----ee~~~~~~~~~~~g~~~i~~ 135 (242)
T cd04724 88 ILQYGLERFLRDAKEAGVDGLIIP--DL----PP----EEAEEFREAAKEYGLDLIFL 135 (242)
T ss_pred HHHhCHHHHHHHHHHCCCcEEEEC--CC----CH----HHHHHHHHHHHHcCCcEEEE
Confidence 234444 444444 8999995 55 32 25679999999999977764
No 108
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=83.69 E-value=21 Score=37.42 Aligned_cols=140 Identities=18% Similarity=0.223 Sum_probs=75.2
Q ss_pred hcchhcCCcEEEeccc----C---CHHHH-HHHHHHHHhc--CCCceEEEEecChhhhhcHHHHHhh-----cCeeEEcC
Q 010211 274 KFGVDNQVDFYAVSFV----K---DAKVV-HELKDYLKSC--NADIHVIVKIESADSIPNLHSIISA-----SDGAMVAR 338 (515)
Q Consensus 274 ~~al~~gvD~ValSfV----r---sa~dv-~~vr~~l~~~--~~~i~IIaKIEt~~aveNldeIl~~-----sDgImIgr 338 (515)
+...+.|+|+|-+.+- . ...+. ..+.+.++.. .-+++|++|+ ++ .+.++.++++. +|||.+.-
T Consensus 121 ~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl-~p-~~~~~~~~a~~l~~~G~dgI~~~n 198 (334)
T PRK07565 121 RQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKL-SP-YFSNLANMAKRLDAAGADGLVLFN 198 (334)
T ss_pred HHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEe-CC-CchhHHHHHHHHHHcCCCeEEEEC
Confidence 4444568999877331 1 01111 1123333222 2358899997 33 34455555553 78886632
Q ss_pred CcccccCC-----------C---CCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEe
Q 010211 339 GDLGAELP-----------I---EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVM 404 (515)
Q Consensus 339 gDLg~elg-----------~---e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vm 404 (515)
.=.+..+. + .-.+.+.+.+-+..+..+.|+|- ..+.-+ ..|+..++..|+|+|+
T Consensus 199 ~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig---------~GGI~s---~~Da~e~l~aGA~~V~ 266 (334)
T PRK07565 199 RFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAA---------TTGVHD---AEDVIKMLLAGADVVM 266 (334)
T ss_pred CcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEE---------ECCCCC---HHHHHHHHHcCCCcee
Confidence 11111111 1 22344555555555556788775 234444 3478899999999999
Q ss_pred ecccccC-CCCHHHHHHHHHHHHHHHhcCC
Q 010211 405 LSGETAH-GKFPLKAVKVMHTVALRTESSL 433 (515)
Q Consensus 405 Ls~ETa~-G~yPveaV~~m~~I~~~aE~~~ 433 (515)
+...--. | | +.+.+|+++.+..+
T Consensus 267 v~t~~~~~g--~----~~~~~i~~~L~~~l 290 (334)
T PRK07565 267 IASALLRHG--P----DYIGTILRGLEDWM 290 (334)
T ss_pred eehHHhhhC--c----HHHHHHHHHHHHHH
Confidence 9743332 2 2 45666767666544
No 109
>PRK14057 epimerase; Provisional
Probab=83.38 E-value=31 Score=35.39 Aligned_cols=139 Identities=10% Similarity=0.070 Sum_probs=87.5
Q ss_pred HhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCC---------CceEEEEecChhhhhcHHHHHhhcCeeEEcCCccc
Q 010211 272 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNA---------DIHVIVKIESADSIPNLHSIISASDGAMVARGDLG 342 (515)
Q Consensus 272 dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~---------~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg 342 (515)
.++.-.+.|+|+|.+- ++...++.+.-+++++.|. ...+..+-+| -++.++.++..+|.|+| ++
T Consensus 90 ~i~~~~~aGad~It~H-~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~T--p~e~i~~~l~~vD~VLv----Mt 162 (254)
T PRK14057 90 AAQACVKAGAHCITLQ-AEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPAT--PLDVIIPILSDVEVIQL----LA 162 (254)
T ss_pred HHHHHHHhCCCEEEEe-eccccCHHHHHHHHHHcCCCcccccccceeEEEECCCC--CHHHHHHHHHhCCEEEE----EE
Confidence 4444457799999874 5766667666677887775 3677778888 57789999999999998 45
Q ss_pred ccCCC---CCHHHHHHHHHH---HHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccC--CCC
Q 010211 343 AELPI---EDVPLLQEDIIR---RCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAH--GKF 414 (515)
Q Consensus 343 ~elg~---e~v~~aqk~Ii~---~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~--G~y 414 (515)
++=|+ .-.+...++|-+ .-.++|..+.+. .-+--+.. -+...+..|+|.+.+- +++ ..-
T Consensus 163 V~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~Ie--------VDGGI~~~---ti~~l~~aGad~~V~G--SalF~~~d 229 (254)
T PRK14057 163 VNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIV--------IDGSLTQD---QLPSLIAQGIDRVVSG--SALFRDDR 229 (254)
T ss_pred ECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEE--------EECCCCHH---HHHHHHHCCCCEEEEC--hHhhCCCC
Confidence 55555 223334444433 333455444331 11222222 2346677899988774 342 235
Q ss_pred HHHHHHHHHHHHHHHh
Q 010211 415 PLKAVKVMHTVALRTE 430 (515)
Q Consensus 415 PveaV~~m~~I~~~aE 430 (515)
+.++++.|+++...+-
T Consensus 230 ~~~~i~~l~~~~~~~~ 245 (254)
T PRK14057 230 LVENTRSWRAMFKVAG 245 (254)
T ss_pred HHHHHHHHHHHHhhcC
Confidence 7888888887766554
No 110
>PRK07695 transcriptional regulator TenI; Provisional
Probab=83.12 E-value=21 Score=34.35 Aligned_cols=130 Identities=11% Similarity=0.070 Sum_probs=73.6
Q ss_pred hcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCC-CCCHH
Q 010211 274 KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELP-IEDVP 351 (515)
Q Consensus 274 ~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg-~e~v~ 351 (515)
..+.+.|+|+|-++.- ...+..+++.+ .+..|-+.+.|.+ .+.+..+. +|.+++|+-.-+..-+ .+..
T Consensus 67 ~la~~~~~~gvHl~~~--~~~~~~~r~~~----~~~~ig~s~~s~e---~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~- 136 (201)
T PRK07695 67 DIALLLNIHRVQLGYR--SFSVRSVREKF----PYLHVGYSVHSLE---EAIQAEKNGADYVVYGHVFPTDCKKGVPAR- 136 (201)
T ss_pred HHHHHcCCCEEEeCcc--cCCHHHHHHhC----CCCEEEEeCCCHH---HHHHHHHcCCCEEEECCCCCCCCCCCCCCC-
Confidence 3456678888877752 12234444433 2445555554433 23333333 8999988754432211 1100
Q ss_pred HHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHHHHHH
Q 010211 352 LLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVAL 427 (515)
Q Consensus 352 ~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~ 427 (515)
-.+.+-+.+....+|++... +. +.. ++..+...|+|++.+.+.-.....|.++++.+.++..
T Consensus 137 -g~~~l~~~~~~~~ipvia~G---------GI-~~~---~~~~~~~~Ga~gvav~s~i~~~~~p~~~~~~~~~~~~ 198 (201)
T PRK07695 137 -GLEELSDIARALSIPVIAIG---------GI-TPE---NTRDVLAAGVSGIAVMSGIFSSANPYSKAKRYAESIK 198 (201)
T ss_pred -CHHHHHHHHHhCCCCEEEEc---------CC-CHH---HHHHHHHcCCCEEEEEHHHhcCCCHHHHHHHHHHHHh
Confidence 01222222344579988742 33 332 3556678999999987776666789999998887654
No 111
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=83.11 E-value=13 Score=42.37 Aligned_cols=150 Identities=11% Similarity=0.149 Sum_probs=95.0
Q ss_pred hhHHHhhcchhcCCcEEEecccCCHHHHH---HHHHHHHhcCCCceEEEEec--ChhhhhcHHHHHhhcCeeEEcCCccc
Q 010211 268 KDWEDIKFGVDNQVDFYAVSFVKDAKVVH---ELKDYLKSCNADIHVIVKIE--SADSIPNLHSIISASDGAMVARGDLG 342 (515)
Q Consensus 268 kD~~dI~~al~~gvD~ValSfVrsa~dv~---~vr~~l~~~~~~i~IIaKIE--t~~aveNldeIl~~sDgImIgrgDLg 342 (515)
.-.+.|....+.|+|+|-+. |.+.++.+ .+++.+.+.|-+++++|-|- -.-|++.+ +.+|.|=|-||..+
T Consensus 42 atv~Qi~~l~~aGceiVRvt-v~~~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~~~A~~a~----~~v~kiRINPGN~~ 116 (611)
T PRK02048 42 ACVAQAKRIIDAGGEYVRLT-TQGVREAENLMNINIGLRSQGYMVPLVADVHFNPKVADVAA----QYAEKVRINPGNYV 116 (611)
T ss_pred HHHHHHHHHHHcCCCEEEEc-CCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCcHHHHHHH----HhhCCEEECCCcCC
Confidence 33455556667899998765 45555554 45566666788999999873 33343322 23899999999997
Q ss_pred cc---C------------CCCCHHHHHHHHHHHHHhcCCcEEEEec-------cccccccCCCcChHH-----HhHHHHH
Q 010211 343 AE---L------------PIEDVPLLQEDIIRRCRSMQKPVIVATN-------MLESMIDHPTPTRAE-----VSDIAIA 395 (515)
Q Consensus 343 ~e---l------------g~e~v~~aqk~Ii~~c~~aGKPvivATq-------mLeSMi~~~~PtrAE-----v~Dvana 395 (515)
-. . .++++.+-.+.++++|+++|+|+=+-++ +|+.. . +|..- ...+--+
T Consensus 117 ~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGvN~GSL~~~i~~~y--g--~tpe~mVeSAle~~~i~ 192 (611)
T PRK02048 117 DPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGVNHGSLSDRIMSRY--G--DTPEGMVESCMEFLRIC 192 (611)
T ss_pred CccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHh--C--CChHHHHHHHHHHHHHH
Confidence 63 1 1245677788899999999999866552 22211 1 12211 2223344
Q ss_pred HHhCCcEEeecccccCCCCHHHHHHHHHHHH
Q 010211 396 VREGADAVMLSGETAHGKFPLKAVKVMHTVA 426 (515)
Q Consensus 396 V~~G~D~vmLs~ETa~G~yPveaV~~m~~I~ 426 (515)
-..|.+=+.+|--.+.-..++++.+.+..-.
T Consensus 193 e~~~f~diviS~KsS~~~~~V~AyRlLa~~l 223 (611)
T PRK02048 193 VEEHFTDVVISIKASNTVVMVRTVRLLVAVM 223 (611)
T ss_pred HHCCCCcEEEEEEeCCcHHHHHHHHHHHHHH
Confidence 5678888888876666655555555555444
No 112
>PRK08227 autoinducer 2 aldolase; Validated
Probab=83.03 E-value=7.9 Score=39.81 Aligned_cols=141 Identities=18% Similarity=0.251 Sum_probs=80.4
Q ss_pred HhhcchhcCCcEEEec-ccCCHHHHH---HHHHHHHhcCC-CceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccC-
Q 010211 272 DIKFGVDNQVDFYAVS-FVKDAKVVH---ELKDYLKSCNA-DIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAEL- 345 (515)
Q Consensus 272 dI~~al~~gvD~ValS-fVrsa~dv~---~vr~~l~~~~~-~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~el- 345 (515)
+++.|++.|+|.|++. |+-+..+-+ ++.+...++.+ .+++++....-+.+.|=.++++.+ .=+| .+||+++
T Consensus 99 sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~a--aRia-aELGADiV 175 (264)
T PRK08227 99 DMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLA--TRIA-AEMGAQII 175 (264)
T ss_pred cHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHH--HHHH-HHHcCCEE
Confidence 3556888999988763 223333333 33333444332 466776333333344433333332 1111 2344332
Q ss_pred --CCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHH
Q 010211 346 --PIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMH 423 (515)
Q Consensus 346 --g~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~ 423 (515)
.++. +..+++++.| ..||++|. -...+++.-...++.++..|+-++..-.----=..|.+.++.++
T Consensus 176 K~~y~~--~~f~~vv~a~---~vPVviaG-------G~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~~~al~ 243 (264)
T PRK08227 176 KTYYVE--EGFERITAGC---PVPIVIAG-------GKKLPERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAMIKAVH 243 (264)
T ss_pred ecCCCH--HHHHHHHHcC---CCcEEEeC-------CCCCCHHHHHHHHHHHHHcCCceeeechhhhccCCHHHHHHHHH
Confidence 2333 5667777755 58999974 12222333388899999999999987555555577888888888
Q ss_pred HHHH
Q 010211 424 TVAL 427 (515)
Q Consensus 424 ~I~~ 427 (515)
.|+.
T Consensus 244 ~IVh 247 (264)
T PRK08227 244 AVVH 247 (264)
T ss_pred HHHh
Confidence 8864
No 113
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=82.96 E-value=5.7 Score=42.47 Aligned_cols=153 Identities=16% Similarity=0.273 Sum_probs=85.8
Q ss_pred HHHhhcchhcCCcEEEecccCCHHH---HHHHHHHHHhcCCCceEEEEe--cChhhhhcHHHHHhhcCeeEEcCCccccc
Q 010211 270 WEDIKFGVDNQVDFYAVSFVKDAKV---VHELKDYLKSCNADIHVIVKI--ESADSIPNLHSIISASDGAMVARGDLGAE 344 (515)
Q Consensus 270 ~~dI~~al~~gvD~ValSfVrsa~d---v~~vr~~l~~~~~~i~IIaKI--Et~~aveNldeIl~~sDgImIgrgDLg~e 344 (515)
.+.|..-.+.|+|.|-++ |.+.++ +.++++.|.+.|.+++++|-| .-.-|++. +-. +|.|=|-||.++-+
T Consensus 34 v~QI~~L~~aGceivRva-vp~~~~a~al~~I~~~l~~~g~~iPlVADIHFd~~lAl~a---~~~-v~kiRINPGNi~~~ 108 (359)
T PF04551_consen 34 VAQIKRLEEAGCEIVRVA-VPDMEAAEALKEIKKRLRALGSPIPLVADIHFDYRLALEA---IEA-VDKIRINPGNIVDE 108 (359)
T ss_dssp HHHHHHHHHCT-SEEEEE-E-SHHHHHHHHHHHHHHHCTT-SS-EEEEESTTCHHHHHH---HHC--SEEEE-TTTSS--
T ss_pred HHHHHHHHHcCCCEEEEc-CCCHHHHHHHHHHHHhhccCCCCCCeeeecCCCHHHHHHH---HHH-hCeEEECCCccccc
Confidence 355555567899987665 345554 455666677788899999987 55555544 323 89999999998633
Q ss_pred C--CCCCHHHHHHHHHHHHHhcCCcEEEEe--ccccc-cccCCCcChHH-----HhHHHHHHHhCCcEEeecccccCCCC
Q 010211 345 L--PIEDVPLLQEDIIRRCRSMQKPVIVAT--NMLES-MIDHPTPTRAE-----VSDIAIAVREGADAVMLSGETAHGKF 414 (515)
Q Consensus 345 l--g~e~v~~aqk~Ii~~c~~aGKPvivAT--qmLeS-Mi~~~~PtrAE-----v~DvanaV~~G~D~vmLs~ETa~G~y 414 (515)
+ +...+.+-.+.++++|+++|+|+=+-. -=|+. |...--||..- ...+.-+-..|+|-+.+| .+-.-
T Consensus 109 ~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~GSL~~~~~~ky~~t~~amvesA~~~~~~le~~~f~~iviS---lKsSd 185 (359)
T PF04551_consen 109 FQEELGSIREKVKEVVEAAKERGIPIRIGVNSGSLEKDILEKYGPTPEAMVESALEHVRILEELGFDDIVIS---LKSSD 185 (359)
T ss_dssp --SS-SS-HHHHHHHHHHHHHHT-EEEEEEEGGGS-HHHHHHHCHHHHHHHHHHHHHHHHHHHCT-GGEEEE---EEBSS
T ss_pred ccccccchHHHHHHHHHHHHHCCCCEEEecccccCcHHHHhhccchHHHHHHHHHHHHHHHHHCCCCcEEEE---EEeCC
Confidence 2 224578889999999999999974432 22211 00000111111 222333445688888887 34556
Q ss_pred HHHHHHHHHHHHHHHh
Q 010211 415 PLKAVKVMHTVALRTE 430 (515)
Q Consensus 415 PveaV~~m~~I~~~aE 430 (515)
+..+|+.-+.++++..
T Consensus 186 v~~~i~ayr~la~~~d 201 (359)
T PF04551_consen 186 VPETIEAYRLLAERMD 201 (359)
T ss_dssp HHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHhcC
Confidence 6677777777766655
No 114
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=82.95 E-value=19 Score=36.01 Aligned_cols=150 Identities=20% Similarity=0.156 Sum_probs=87.5
Q ss_pred CCCCCHhhHHHh-hcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-----cCeeE
Q 010211 262 LPSITDKDWEDI-KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-----SDGAM 335 (515)
Q Consensus 262 lp~ltekD~~dI-~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-----sDgIm 335 (515)
-|..|+.|.+.+ +.|.++|+..|+++ +..+..+++.|+ +..+.+.+=|==|.|....+.-+.. .||.-
T Consensus 16 ~p~~t~~~i~~~~~~A~~~~~~avcv~----p~~v~~a~~~l~--~~~v~v~tVigFP~G~~~~~~K~~e~~~Ai~~GA~ 89 (221)
T PRK00507 16 KPEATEEDIDKLCDEAKEYGFASVCVN----PSYVKLAAELLK--GSDVKVCTVIGFPLGANTTAVKAFEAKDAIANGAD 89 (221)
T ss_pred CCCCCHHHHHHHHHHHHHhCCeEEEEC----HHHHHHHHHHhC--CCCCeEEEEecccCCCChHHHHHHHHHHHHHcCCc
Confidence 367888887555 77888999988875 667888888884 4567887777666666555444332 12210
Q ss_pred EcCCcccccCCC---CCHHHHHHHHHHHHHh-cCCcEEEEeccccccccCCCcChHHHhHHHH-HHHhCCcEEeeccccc
Q 010211 336 VARGDLGAELPI---EDVPLLQEDIIRRCRS-MQKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAVMLSGETA 410 (515)
Q Consensus 336 IgrgDLg~elg~---e~v~~aqk~Ii~~c~~-aGKPvivATqmLeSMi~~~~PtrAEv~Dvan-aV~~G~D~vmLs~ETa 410 (515)
- =|+.+.++. .++..+.++|.+.... .++++=+ ++..+.-+..|+.++.. ++..|+|.+--|.--+
T Consensus 90 E--iD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKv-------IlEt~~L~~e~i~~a~~~~~~agadfIKTsTG~~ 160 (221)
T PRK00507 90 E--IDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKV-------IIETCLLTDEEKVKACEIAKEAGADFVKTSTGFS 160 (221)
T ss_pred e--EeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEE-------EeecCcCCHHHHHHHHHHHHHhCCCEEEcCCCCC
Confidence 0 123333332 2344444444333332 3443311 12567777788777766 6777999665542221
Q ss_pred CCCCHHHHHHHHHHHH
Q 010211 411 HGKFPLKAVKVMHTVA 426 (515)
Q Consensus 411 ~G~yPveaV~~m~~I~ 426 (515)
.|.--.+.|+.|.+.+
T Consensus 161 ~~gat~~~v~~m~~~~ 176 (221)
T PRK00507 161 TGGATVEDVKLMRETV 176 (221)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 2223468888887665
No 115
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=82.84 E-value=27 Score=31.73 Aligned_cols=120 Identities=21% Similarity=0.168 Sum_probs=66.4
Q ss_pred hhcchhcCCcEEEecccCCH--HHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCC
Q 010211 273 IKFGVDNQVDFYAVSFVKDA--KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIED 349 (515)
Q Consensus 273 I~~al~~gvD~ValSfVrsa--~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e~ 349 (515)
.+++.+.|+|+|-+...... +...++.+.+.+.-.+..++.++......+... ..+. +|.+.+.++.-+.......
T Consensus 77 a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~-~~~~g~d~i~~~~~~~~~~~~~~~ 155 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAA-AEEAGVDEVGLGNGGGGGGGRDAV 155 (200)
T ss_pred HHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCccchhh-HHHcCCCEEEEcCCcCCCCCccCc
Confidence 35667789999988765421 112222222222223678888987655443211 2223 7999998776544332221
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 350 VPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 350 v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
+.....+....+..++|++.+. +.-+. .++..++..|+|++++.
T Consensus 156 -~~~~~~~~~~~~~~~~pi~~~G---------Gi~~~---~~~~~~~~~Gad~v~vg 199 (200)
T cd04722 156 -PIADLLLILAKRGSKVPVIAGG---------GINDP---EDAAEALALGADGVIVG 199 (200)
T ss_pred -hhHHHHHHHHHhcCCCCEEEEC---------CCCCH---HHHHHHHHhCCCEEEec
Confidence 1112223333456789988853 33222 34557777899999874
No 116
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=82.71 E-value=56 Score=33.40 Aligned_cols=104 Identities=17% Similarity=0.241 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-----cCeeEEc-----CC-ccc-------ccC----CC
Q 010211 290 KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-----SDGAMVA-----RG-DLG-------AEL----PI 347 (515)
Q Consensus 290 rsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-----sDgImIg-----rg-DLg-------~el----g~ 347 (515)
.+++.+.++-+.+++. -++.|.+||- ..+++..++++. +|+|.+. +. |+. ... |.
T Consensus 140 ~~~~~~~eiv~~vr~~-~~~pv~vKi~--~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~ 216 (300)
T TIGR01037 140 QDPELSADVVKAVKDK-TDVPVFAKLS--PNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGP 216 (300)
T ss_pred cCHHHHHHHHHHHHHh-cCCCEEEECC--CChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccch
Confidence 3445544444444432 2578999994 133444455442 7999873 21 211 111 11
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeeccc
Q 010211 348 EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGE 408 (515)
Q Consensus 348 e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~E 408 (515)
...+...+.+-+..+..++|+|.. .+.-+. .|+..++..|+|+||+...
T Consensus 217 ~~~~~~l~~v~~i~~~~~ipvi~~---------GGI~s~---~da~~~l~~GAd~V~igr~ 265 (300)
T TIGR01037 217 AIKPIALRMVYDVYKMVDIPIIGV---------GGITSF---EDALEFLMAGASAVQVGTA 265 (300)
T ss_pred hhhHHHHHHHHHHHhcCCCCEEEE---------CCCCCH---HHHHHHHHcCCCceeecHH
Confidence 122333445555555678998863 333332 3566888899999998644
No 117
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=82.69 E-value=42 Score=33.80 Aligned_cols=134 Identities=14% Similarity=0.052 Sum_probs=83.0
Q ss_pred HHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCC--CceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCC-
Q 010211 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNA--DIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPI- 347 (515)
Q Consensus 271 ~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~--~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~- 347 (515)
+.++.-.+.|+|+|.+- +++..+..+.-+.+++.|. +..+..+-+| -++.++.++..+|.|+| ++++=|+
T Consensus 82 ~~i~~~~~aGad~It~H-~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~T--p~~~i~~~l~~vD~VLi----MtV~PGfg 154 (228)
T PRK08091 82 EVAKACVAAGADIVTLQ-VEQTHDLALTIEWLAKQKTTVLIGLCLCPET--PISLLEPYLDQIDLIQI----LTLDPRTG 154 (228)
T ss_pred HHHHHHHHhCCCEEEEc-ccCcccHHHHHHHHHHCCCCceEEEEECCCC--CHHHHHHHHhhcCEEEE----EEECCCCC
Confidence 34555557899999875 5766677777788888888 7788888888 47889999999999998 4444444
Q ss_pred -----CCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccC-C-CCHHHHHH
Q 010211 348 -----EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAH-G-KFPLKAVK 420 (515)
Q Consensus 348 -----e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~-G-~yPveaV~ 420 (515)
+....-.+++-+.-.++|.-+.+.. . +--+.. -+......|+|.+.+. |++ | .-|.+.++
T Consensus 155 GQ~f~~~~l~KI~~lr~~~~~~~~~~~IeV-------D-GGI~~~---ti~~l~~aGaD~~V~G--SalF~~~d~~~~i~ 221 (228)
T PRK08091 155 TKAPSDLILDRVIQVENRLGNRRVEKLISI-------D-GSMTLE---LASYLKQHQIDWVVSG--SALFSQGELKTTLK 221 (228)
T ss_pred CccccHHHHHHHHHHHHHHHhcCCCceEEE-------E-CCCCHH---HHHHHHHCCCCEEEEC--hhhhCCCCHHHHHH
Confidence 2222222333333334453332211 2 222222 2336677899987764 332 2 24677777
Q ss_pred HHHH
Q 010211 421 VMHT 424 (515)
Q Consensus 421 ~m~~ 424 (515)
.+++
T Consensus 222 ~l~~ 225 (228)
T PRK08091 222 EWKS 225 (228)
T ss_pred HHHH
Confidence 7765
No 118
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=82.56 E-value=22 Score=35.71 Aligned_cols=70 Identities=9% Similarity=0.176 Sum_probs=56.6
Q ss_pred HHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCC
Q 010211 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPI 347 (515)
Q Consensus 271 ~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~ 347 (515)
..+..-.+.|+|+|.+ .++...++.++-+++++.|.+..+..+=+|+ ++.++.++..+|.|++ ++++=|+
T Consensus 75 ~~i~~fa~agad~It~-H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp--~~~i~~~l~~vD~Vll----MsVnPGf 144 (220)
T COG0036 75 RYIEAFAKAGADIITF-HAEATEHIHRTIQLIKELGVKAGLVLNPATP--LEALEPVLDDVDLVLL----MSVNPGF 144 (220)
T ss_pred HHHHHHHHhCCCEEEE-EeccCcCHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhhCCEEEE----EeECCCC
Confidence 3444455789999987 4677778888899999999999999999997 6779999999999998 4555555
No 119
>PRK04302 triosephosphate isomerase; Provisional
Probab=81.99 E-value=17 Score=35.86 Aligned_cols=136 Identities=15% Similarity=0.214 Sum_probs=75.6
Q ss_pred hhcchhcCCcEEEecccCCHHHHHHHHHHHHhcC-CCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCc-ccccCCCC-
Q 010211 273 IKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCN-ADIHVIVKIESADSIPNLHSIISA-SDGAMVARGD-LGAELPIE- 348 (515)
Q Consensus 273 I~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~-~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgD-Lg~elg~e- 348 (515)
++...+.|+|+|.++..++.-...++.+++..+. ..+.+|. +..+ .+.+..+.+. .|.|-+.|-+ .|...+..
T Consensus 78 ~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~--~v~~-~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~ 154 (223)
T PRK04302 78 PEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVV--CVNN-PETSAAAAALGPDYVAVEPPELIGTGIPVSK 154 (223)
T ss_pred HHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEE--EcCC-HHHHHHHhcCCCCEEEEeCccccccCCCCCc
Confidence 4445578999999997544444444444443221 2444554 3333 3444544444 4666665644 33322321
Q ss_pred CHHHHHHHHHHHHHhc--CCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHH
Q 010211 349 DVPLLQEDIIRRCRSM--QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMH 423 (515)
Q Consensus 349 ~v~~aqk~Ii~~c~~a--GKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~ 423 (515)
..+...+++++..++. +.|++.. .+.-+. .++..+...|+|+++..+....-.-|.+.++-+.
T Consensus 155 ~~~~~i~~~~~~ir~~~~~~pvi~G---------ggI~~~---e~~~~~~~~gadGvlVGsa~l~~~~~~~~~~~~~ 219 (223)
T PRK04302 155 AKPEVVEDAVEAVKKVNPDVKVLCG---------AGISTG---EDVKAALELGADGVLLASGVVKAKDPEAALRDLV 219 (223)
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEE---------CCCCCH---HHHHHHHcCCCCEEEEehHHhCCcCHHHHHHHHH
Confidence 2345556666777763 5787763 223222 2445667799999998766666666766665443
No 120
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=81.64 E-value=40 Score=33.01 Aligned_cols=158 Identities=15% Similarity=0.158 Sum_probs=92.3
Q ss_pred CCHhhHHHh-hcchhcCCcEEEec-ccCCHHHHHHHHHHHHhcCCCceEEEEecC-hhhhhc-HHHHHhh-cCeeEE--c
Q 010211 265 ITDKDWEDI-KFGVDNQVDFYAVS-FVKDAKVVHELKDYLKSCNADIHVIVKIES-ADSIPN-LHSIISA-SDGAMV--A 337 (515)
Q Consensus 265 ltekD~~dI-~~al~~gvD~ValS-fVrsa~dv~~vr~~l~~~~~~i~IIaKIEt-~~aveN-ldeIl~~-sDgImI--g 337 (515)
++..++..+ +.-.+.|+|.|=+. ..-+.+++..++.+.+.... ..+.+.+-. .+.++. ++.+... .|.+.+ .
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i~~~ 89 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPN-ARLQALCRANEEDIERAVEAAKEAGIDIIRIFIS 89 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHS-SEEEEEEESCHHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhcc-cccceeeeehHHHHHHHHHhhHhccCCEEEecCc
Confidence 466676555 44456799998887 34567777777766544333 333333322 222322 2222223 555544 3
Q ss_pred CCcccccC----CCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHH-hCCcEEeecccccCC
Q 010211 338 RGDLGAEL----PIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVR-EGADAVMLSGETAHG 412 (515)
Q Consensus 338 rgDLg~el----g~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~-~G~D~vmLs~ETa~G 412 (515)
-.|+-... ..++......++++.+++.|..+.+.. ......+..++.+.+..+. .|+|.+.|. +|.=.
T Consensus 90 ~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~------~~~~~~~~~~~~~~~~~~~~~g~~~i~l~-Dt~G~ 162 (237)
T PF00682_consen 90 VSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGC------EDASRTDPEELLELAEALAEAGADIIYLA-DTVGI 162 (237)
T ss_dssp TSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEE------TTTGGSSHHHHHHHHHHHHHHT-SEEEEE-ETTS-
T ss_pred ccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCc------cccccccHHHHHHHHHHHHHcCCeEEEee-CccCC
Confidence 33321111 114566777888999999999997643 2334555666777766665 499999985 88877
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 010211 413 KFPLKAVKVMHTVALRTE 430 (515)
Q Consensus 413 ~yPveaV~~m~~I~~~aE 430 (515)
-.|.+.-+.+..+-++.-
T Consensus 163 ~~P~~v~~lv~~~~~~~~ 180 (237)
T PF00682_consen 163 MTPEDVAELVRALREALP 180 (237)
T ss_dssp S-HHHHHHHHHHHHHHST
T ss_pred cCHHHHHHHHHHHHHhcc
Confidence 889887777777766655
No 121
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=81.59 E-value=3.2 Score=44.30 Aligned_cols=51 Identities=20% Similarity=0.317 Sum_probs=42.3
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHH
Q 010211 99 RKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKE 149 (515)
Q Consensus 99 r~TKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~ 149 (515)
.+-.+-+.+||..++.|..++|+++|+|++=|.-+||..+...++++.+|+
T Consensus 95 ~~l~V~aavg~~~~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~ 145 (352)
T PF00478_consen 95 GRLLVAAAVGTRDDDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKK 145 (352)
T ss_dssp SCBCEEEEEESSTCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHH
T ss_pred ccceEEEEecCCHHHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHH
Confidence 356678889999999999999999999999999999999877777766664
No 122
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=81.19 E-value=7.8 Score=38.07 Aligned_cols=115 Identities=15% Similarity=0.168 Sum_probs=75.9
Q ss_pred HhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCC----
Q 010211 272 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPI---- 347 (515)
Q Consensus 272 dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~---- 347 (515)
.++.-.+.|+|+|.+- +++.++..++-+++++.|.+..|..+-+| .++.++.++..+|.|++ ++++-|+
T Consensus 72 ~i~~~~~~g~~~i~~H-~E~~~~~~~~i~~ik~~g~k~GialnP~T--~~~~~~~~l~~vD~Vlv----MsV~PG~~Gq~ 144 (201)
T PF00834_consen 72 YIEEFAEAGADYITFH-AEATEDPKETIKYIKEAGIKAGIALNPET--PVEELEPYLDQVDMVLV----MSVEPGFGGQK 144 (201)
T ss_dssp HHHHHHHHT-SEEEEE-GGGTTTHHHHHHHHHHTTSEEEEEE-TTS---GGGGTTTGCCSSEEEE----ESS-TTTSSB-
T ss_pred HHHHHHhcCCCEEEEc-ccchhCHHHHHHHHHHhCCCEEEEEECCC--CchHHHHHhhhcCEEEE----EEecCCCCccc
Confidence 3444457799999875 57888888888999999999888888888 57889999999999988 4555554
Q ss_pred --CCHHHHHHHHHHHHHhcCCcEEEEeccccccccC-CCcChHHHhHHHHHHHhCCcEEee
Q 010211 348 --EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDH-PTPTRAEVSDIAIAVREGADAVML 405 (515)
Q Consensus 348 --e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~-~~PtrAEv~DvanaV~~G~D~vmL 405 (515)
+.+..-.+++-+...++|..+-+.. .. -.... +......|+|.+.+
T Consensus 145 f~~~~~~KI~~l~~~~~~~~~~~~I~v-------DGGI~~~~-----~~~~~~aGad~~V~ 193 (201)
T PF00834_consen 145 FIPEVLEKIRELRKLIPENGLDFEIEV-------DGGINEEN-----IKQLVEAGADIFVA 193 (201)
T ss_dssp -HGGHHHHHHHHHHHHHHHTCGSEEEE-------ESSESTTT-----HHHHHHHT--EEEE
T ss_pred ccHHHHHHHHHHHHHHHhcCCceEEEE-------ECCCCHHH-----HHHHHHcCCCEEEE
Confidence 4555566666666666665554421 21 12222 23567789998876
No 123
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=80.90 E-value=65 Score=32.38 Aligned_cols=155 Identities=13% Similarity=0.100 Sum_probs=90.8
Q ss_pred CCCHhhHHHh-hcchhcCCcEEEecccCC-HHHHHHHHHHHHhcCCCceEEEEe-cChhhhhcHHHHHhh-cCeeEEc--
Q 010211 264 SITDKDWEDI-KFGVDNQVDFYAVSFVKD-AKVVHELKDYLKSCNADIHVIVKI-ESADSIPNLHSIISA-SDGAMVA-- 337 (515)
Q Consensus 264 ~ltekD~~dI-~~al~~gvD~ValSfVrs-a~dv~~vr~~l~~~~~~i~IIaKI-Et~~aveNldeIl~~-sDgImIg-- 337 (515)
.++..++..| +.-.+.|+|.|=+.|-.. ..+...++.+.+ .+.+..+.+-. -+.+++ +...+. .|.|-+.
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~~-~~~~~~~~~~~r~~~~~v---~~a~~~g~~~i~i~~~ 91 (259)
T cd07939 16 AFSREEKLAIARALDEAGVDEIEVGIPAMGEEEREAIRAIVA-LGLPARLIVWCRAVKEDI---EAALRCGVTAVHISIP 91 (259)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHHh-cCCCCEEEEeccCCHHHH---HHHHhCCcCEEEEEEe
Confidence 3466776555 444568999987765433 333344544443 33445555443 233333 444443 5655442
Q ss_pred CCcc--ccc--CCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHH-HHhCCcEEeecccccCC
Q 010211 338 RGDL--GAE--LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIA-VREGADAVMLSGETAHG 412 (515)
Q Consensus 338 rgDL--g~e--lg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~Dvana-V~~G~D~vmLs~ETa~G 412 (515)
-.|. -.. ...++.....+.+++.|+++|..|.+.. .....-+..++.+.+.. ...|+|.+.|. +|.=.
T Consensus 92 ~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~------~~~~~~~~~~~~~~~~~~~~~G~~~i~l~-DT~G~ 164 (259)
T cd07939 92 VSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA------EDASRADPDFLIEFAEVAQEAGADRLRFA-DTVGI 164 (259)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee------ccCCCCCHHHHHHHHHHHHHCCCCEEEeC-CCCCC
Confidence 1111 011 1224455667889999999999876532 13333445556665544 45699999885 88888
Q ss_pred CCHHHHHHHHHHHHHHH
Q 010211 413 KFPLKAVKVMHTVALRT 429 (515)
Q Consensus 413 ~yPveaV~~m~~I~~~a 429 (515)
.+|-+.-+.+..+.+..
T Consensus 165 ~~P~~v~~lv~~l~~~~ 181 (259)
T cd07939 165 LDPFTTYELIRRLRAAT 181 (259)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99988888887777654
No 124
>PRK08999 hypothetical protein; Provisional
Probab=80.75 E-value=21 Score=36.57 Aligned_cols=42 Identities=7% Similarity=-0.012 Sum_probs=36.8
Q ss_pred HHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcC
Q 010211 114 REMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFE 155 (515)
Q Consensus 114 ~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~ 155 (515)
.+.+++++..|+..+-|-.-+.+.++..+.++.+++..++++
T Consensus 147 ~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~~~~l~~~~~~~~ 188 (312)
T PRK08999 147 LARLERALAAGIRLIQLRAPQLPPAAYRALARAALGLCRRAG 188 (312)
T ss_pred HHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 367889999999999999999999999999999998877766
No 125
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=80.64 E-value=53 Score=33.66 Aligned_cols=119 Identities=14% Similarity=0.154 Sum_probs=76.2
Q ss_pred HHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCC-CC
Q 010211 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPI-ED 349 (515)
Q Consensus 271 ~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~-e~ 349 (515)
+.++.+.+.|+|++.++-. ..++..++.+.+++.|-+...+..=.| -.+.+..|++.++|.+--=.-.|+. |. ..
T Consensus 110 ~F~~~~~~aGvdgviipDL-P~ee~~~~~~~~~~~gi~~I~lv~PtT--~~eri~~i~~~a~gFIY~vS~~GvT-G~~~~ 185 (263)
T CHL00200 110 KFIKKISQAGVKGLIIPDL-PYEESDYLISVCNLYNIELILLIAPTS--SKSRIQKIARAAPGCIYLVSTTGVT-GLKTE 185 (263)
T ss_pred HHHHHHHHcCCeEEEecCC-CHHHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHHhCCCcEEEEcCCCCC-CCCcc
Confidence 3456677899999999875 457777888888877766555554444 3667999999998654421112221 22 34
Q ss_pred HHHHHHHHHHHHHh-cCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEee
Q 010211 350 VPLLQEDIIRRCRS-MQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 405 (515)
Q Consensus 350 v~~aqk~Ii~~c~~-aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmL 405 (515)
++.-.++.++..++ .++|+.+- -+.-+.. ++......|+|++..
T Consensus 186 ~~~~~~~~i~~ir~~t~~Pi~vG---------FGI~~~e---~~~~~~~~GADGvVV 230 (263)
T CHL00200 186 LDKKLKKLIETIKKMTNKPIILG---------FGISTSE---QIKQIKGWNINGIVI 230 (263)
T ss_pred ccHHHHHHHHHHHHhcCCCEEEE---------CCcCCHH---HHHHHHhcCCCEEEE
Confidence 55556666666664 47888763 2333333 344667788999986
No 126
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=80.38 E-value=31 Score=37.43 Aligned_cols=138 Identities=16% Similarity=0.147 Sum_probs=80.0
Q ss_pred HhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCCH
Q 010211 272 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDV 350 (515)
Q Consensus 272 dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e~v 350 (515)
+++.+.+.|+|+|.+..-.+...+.++.++.++.|..+.+ -.+-....++.+.++.+. +|.|-+++|--+...+. ..
T Consensus 73 ~v~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G~~~~~-g~~s~~t~~e~~~~a~~~GaD~I~~~pg~~~~~~~~-~~ 150 (430)
T PRK07028 73 EVEMAAKAGADIVCILGLADDSTIEDAVRAARKYGVRLMA-DLINVPDPVKRAVELEELGVDYINVHVGIDQQMLGK-DP 150 (430)
T ss_pred HHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHcCCEEEE-EecCCCCHHHHHHHHHhcCCCEEEEEeccchhhcCC-Ch
Confidence 6667788999998864322323455566666665544322 012222234555666665 89998887643333332 22
Q ss_pred HHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHHHHHH
Q 010211 351 PLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVAL 427 (515)
Q Consensus 351 ~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~ 427 (515)
....+++.+ ..+.|+.+.. +. +. ..+..++..|+|++.+.+.-..-.-|.++++.+.+.+.
T Consensus 151 ~~~l~~l~~---~~~iPI~a~G---------GI-~~---~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~ 211 (430)
T PRK07028 151 LELLKEVSE---EVSIPIAVAG---------GL-DA---ETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAID 211 (430)
T ss_pred HHHHHHHHh---hCCCcEEEEC---------CC-CH---HHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHh
Confidence 233344433 3468887632 22 32 23557788999999887655545568888887776654
No 127
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=80.38 E-value=34 Score=32.96 Aligned_cols=131 Identities=17% Similarity=0.142 Sum_probs=72.5
Q ss_pred HHhhcchhcCCcEEEe-----cccCC----HHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCc
Q 010211 271 EDIKFGVDNQVDFYAV-----SFVKD----AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGD 340 (515)
Q Consensus 271 ~dI~~al~~gvD~Val-----SfVrs----a~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgD 340 (515)
+.++.+.+.|+|+|.+ +|+.+ .+.++++++.. .....+-.++-. ..+.++.+.+. +|++.+--
T Consensus 20 ~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~---~~~~~v~l~v~d--~~~~i~~~~~~g~d~v~vh~-- 92 (220)
T PRK05581 20 EEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVT---KLPLDVHLMVEN--PDRYVPDFAKAGADIITFHV-- 92 (220)
T ss_pred HHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcC---CCcEEEEeeeCC--HHHHHHHHHHcCCCEEEEee--
Confidence 5567778899999999 88744 33444444332 212223344443 33346666655 79976631
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecc--ccc-CCCCHHH
Q 010211 341 LGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG--ETA-HGKFPLK 417 (515)
Q Consensus 341 Lg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~--ETa-~G~yPve 417 (515)
+.. ......++.+++.|..+++++ ++. |..| ....+..++|.+++-+ .+. ...++-+
T Consensus 93 -----~~~---~~~~~~~~~~~~~~~~~g~~~--------~~~-t~~e---~~~~~~~~~d~i~~~~~~~g~tg~~~~~~ 152 (220)
T PRK05581 93 -----EAS---EHIHRLLQLIKSAGIKAGLVL--------NPA-TPLE---PLEDVLDLLDLVLLMSVNPGFGGQKFIPE 152 (220)
T ss_pred -----ccc---hhHHHHHHHHHHcCCEEEEEE--------CCC-CCHH---HHHHHHhhCCEEEEEEECCCCCcccccHH
Confidence 111 233456889999999988853 111 2233 2244556688666532 222 2344556
Q ss_pred HHHHHHHHHHH
Q 010211 418 AVKVMHTVALR 428 (515)
Q Consensus 418 aV~~m~~I~~~ 428 (515)
..+.++++...
T Consensus 153 ~~~~i~~~~~~ 163 (220)
T PRK05581 153 VLEKIRELRKL 163 (220)
T ss_pred HHHHHHHHHHH
Confidence 66666665543
No 128
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=80.35 E-value=16 Score=38.97 Aligned_cols=144 Identities=16% Similarity=0.215 Sum_probs=96.5
Q ss_pred HHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEec--ChhhhhcHHHHHhhcCeeEEcCCcccccCCCC
Q 010211 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIE--SADSIPNLHSIISASDGAMVARGDLGAELPIE 348 (515)
Q Consensus 271 ~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIE--t~~aveNldeIl~~sDgImIgrgDLg~elg~e 348 (515)
+.|..-.+.|+|.|-++ |.+.++...+++.-+ +.+++++|-|- -+.| +.++.+-+|.|=|-||.++-
T Consensus 38 ~QI~~L~~aGceiVRva-vp~~~~A~al~~I~~--~~~iPlVADIHFd~~lA---l~a~~~g~dkiRINPGNig~----- 106 (346)
T TIGR00612 38 AQIRALEEAGCDIVRVT-VPDRESAAAFEAIKE--GTNVPLVADIHFDYRLA---ALAMAKGVAKVRINPGNIGF----- 106 (346)
T ss_pred HHHHHHHHcCCCEEEEc-CCCHHHHHhHHHHHh--CCCCCEEEeeCCCcHHH---HHHHHhccCeEEECCCCCCC-----
Confidence 44444456899999887 688888888877665 45799999873 3333 45555669999999998866
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEE--eccccc--cccCCCcChHH-----HhHHHHHHHhCCcEEeecccccCCCCHHHHH
Q 010211 349 DVPLLQEDIIRRCRSMQKPVIVA--TNMLES--MIDHPTPTRAE-----VSDIAIAVREGADAVMLSGETAHGKFPLKAV 419 (515)
Q Consensus 349 ~v~~aqk~Ii~~c~~aGKPvivA--TqmLeS--Mi~~~~PtrAE-----v~DvanaV~~G~D~vmLs~ETa~G~yPveaV 419 (515)
.+-.+.++++|+++|+|+=+- .-=|+. |...+.||..- ...+.-+-..|++=+.+| .+..-+..++
T Consensus 107 --~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~diviS---~KsSdv~~~i 181 (346)
T TIGR00612 107 --RERVRDVVEKARDHGKAMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILEKLGFRNVVLS---MKASDVAETV 181 (346)
T ss_pred --HHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEE---EEcCCHHHHH
Confidence 467789999999999997433 222222 11233455422 333444455688878877 4555677777
Q ss_pred HHHHHHHHHHh
Q 010211 420 KVMHTVALRTE 430 (515)
Q Consensus 420 ~~m~~I~~~aE 430 (515)
+.-+.++++.+
T Consensus 182 ~ayr~la~~~d 192 (346)
T TIGR00612 182 AAYRLLAERSD 192 (346)
T ss_pred HHHHHHHhhCC
Confidence 77777665554
No 129
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=80.32 E-value=21 Score=34.93 Aligned_cols=128 Identities=17% Similarity=0.242 Sum_probs=66.0
Q ss_pred hhHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcC-CCceEEEE-----ecChh----hhhcHHHHH----hh-cC
Q 010211 268 KDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCN-ADIHVIVK-----IESAD----SIPNLHSII----SA-SD 332 (515)
Q Consensus 268 kD~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~-~~i~IIaK-----IEt~~----aveNldeIl----~~-sD 332 (515)
++.++++.+.+.|+|.|.++- ...++...+.++.++.+ +.+.+-.. +++.. .-.+..+++ +. +|
T Consensus 82 ~~~ed~~~~~~~Ga~~vvlgs-~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~ 160 (230)
T TIGR00007 82 RSLEDVEKLLDLGVDRVIIGT-AAVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLE 160 (230)
T ss_pred CCHHHHHHHHHcCCCEEEECh-HHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCC
Confidence 456778888889999887652 12233344555555555 33332212 11110 011222332 23 78
Q ss_pred eeEEcCCccccc---CCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccc
Q 010211 333 GAMVARGDLGAE---LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGET 409 (515)
Q Consensus 333 gImIgrgDLg~e---lg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ET 409 (515)
.+++. |+..+ -| .+ ....+++ ++....|++.+ .+.-+.++ +..+...|+|++|+..--
T Consensus 161 ~ii~~--~~~~~g~~~g-~~-~~~i~~i---~~~~~ipvia~---------GGi~~~~d---i~~~~~~Gadgv~ig~a~ 221 (230)
T TIGR00007 161 GIIYT--DISRDGTLSG-PN-FELTKEL---VKAVNVPVIAS---------GGVSSIDD---LIALKKLGVYGVIVGKAL 221 (230)
T ss_pred EEEEE--eecCCCCcCC-CC-HHHHHHH---HHhCCCCEEEe---------CCCCCHHH---HHHHHHCCCCEEEEeHHH
Confidence 88864 33222 23 22 2233333 34467898884 45555544 445566899999986333
Q ss_pred cCCCCH
Q 010211 410 AHGKFP 415 (515)
Q Consensus 410 a~G~yP 415 (515)
-.|++|
T Consensus 222 ~~~~~~ 227 (230)
T TIGR00007 222 YEGKIT 227 (230)
T ss_pred HcCCCC
Confidence 345544
No 130
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=80.31 E-value=28 Score=35.07 Aligned_cols=146 Identities=12% Similarity=0.084 Sum_probs=83.1
Q ss_pred CCCCHhhHH-HhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecC--hhh--------hhcHHHHHhh-
Q 010211 263 PSITDKDWE-DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIES--ADS--------IPNLHSIISA- 330 (515)
Q Consensus 263 p~ltekD~~-dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt--~~a--------veNldeIl~~- 330 (515)
|.-+..|.+ .+..+.++|+|.|.++. ..+....+. .+.++.++..+++ +.+ +..+++.++.
T Consensus 31 p~~~~~~~~~~~~~a~~~~~~~v~~~p----~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~G 103 (258)
T TIGR01949 31 PIKGLVDIRKTVNEVAEGGADAVLLHK----GIVRRGHRG---YGKDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMG 103 (258)
T ss_pred CCCCcCCHHHHHHHHHhcCCCEEEeCc----chhhhcccc---cCCCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCC
Confidence 455667764 45788899999998863 222222222 3456778889843 221 1336666665
Q ss_pred cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEecccccc-ccCCCcChHHHhH-HHHHHHhCCcEEeeccc
Q 010211 331 SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESM-IDHPTPTRAEVSD-IAIAVREGADAVMLSGE 408 (515)
Q Consensus 331 sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSM-i~~~~PtrAEv~D-vanaV~~G~D~vmLs~E 408 (515)
+|+|-+--.... .+-.+.....+++.+.|++.|.|+++- ++-. .+.+..+..++.. ...+...|+|.+-.+
T Consensus 104 a~~v~~~~~~g~--~~~~~~~~~~~~i~~~~~~~g~~liv~---~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~-- 176 (258)
T TIGR01949 104 ADAVSIHVNVGS--DTEWEQIRDLGMIAEICDDWGVPLLAM---MYPRGPHIDDRDPELVAHAARLGAELGADIVKTP-- 176 (258)
T ss_pred CCEEEEEEecCC--chHHHHHHHHHHHHHHHHHcCCCEEEE---EeccCcccccccHHHHHHHHHHHHHHCCCEEecc--
Confidence 676655322111 122345577888999999999999872 1100 0011112233444 345667899999975
Q ss_pred ccCCCCHHHHHHHHHHHHHH
Q 010211 409 TAHGKFPLKAVKVMHTVALR 428 (515)
Q Consensus 409 Ta~G~yPveaV~~m~~I~~~ 428 (515)
|+ .-++.|++++..
T Consensus 177 -----~~-~~~~~l~~~~~~ 190 (258)
T TIGR01949 177 -----YT-GDIDSFRDVVKG 190 (258)
T ss_pred -----CC-CCHHHHHHHHHh
Confidence 22 135556666554
No 131
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=80.22 E-value=73 Score=32.50 Aligned_cols=164 Identities=12% Similarity=0.073 Sum_probs=92.4
Q ss_pred cCceeeeCCCccCCCCCCHhhHHHh-hcchhcCCcEEEecc-cCCHHHHHHHHHHHHhcCCCceEEEE-ecChhhhhcHH
Q 010211 249 SRRHLNVRGKSANLPSITDKDWEDI-KFGVDNQVDFYAVSF-VKDAKVVHELKDYLKSCNADIHVIVK-IESADSIPNLH 325 (515)
Q Consensus 249 s~KgVnlpg~~~~lp~ltekD~~dI-~~al~~gvD~ValSf-Vrsa~dv~~vr~~l~~~~~~i~IIaK-IEt~~aveNld 325 (515)
-|-|...|+..+ +..++..| +.-.+.|+|.|=+.+ ..+.++...+ +.+...+....+.+. .-+.+++ +
T Consensus 8 LRDG~Q~~~~~~-----s~~~k~~i~~~L~~~Gv~~IEvG~P~~~~~~~~~~-~~l~~~~~~~~v~~~~r~~~~di---~ 78 (262)
T cd07948 8 LREGEQFANAFF-----DTEDKIEIAKALDAFGVDYIELTSPAASPQSRADC-EAIAKLGLKAKILTHIRCHMDDA---R 78 (262)
T ss_pred CCCcCcCCCCCC-----CHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHH-HHHHhCCCCCcEEEEecCCHHHH---H
Confidence 355666666543 55565444 555678999987743 2344443334 334344444444433 2223332 3
Q ss_pred HHHhh-cCeeEEc--CCccc----ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHh
Q 010211 326 SIISA-SDGAMVA--RGDLG----AELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVRE 398 (515)
Q Consensus 326 eIl~~-sDgImIg--rgDLg----~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~ 398 (515)
..++. .|.|.+- -.|.- .....++.....+++++.+++.|..|.+.- . +... .| ...+.+.+..+.+
T Consensus 79 ~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~--e--da~r-~~-~~~l~~~~~~~~~ 152 (262)
T cd07948 79 IAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS--E--DSFR-SD-LVDLLRVYRAVDK 152 (262)
T ss_pred HHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE--E--eeCC-CC-HHHHHHHHHHHHH
Confidence 33333 5655442 12210 012235677778889999999998876632 1 1121 11 3346666655444
Q ss_pred -CCcEEeecccccCCCCHHHHHHHHHHHHHH
Q 010211 399 -GADAVMLSGETAHGKFPLKAVKVMHTVALR 428 (515)
Q Consensus 399 -G~D~vmLs~ETa~G~yPveaV~~m~~I~~~ 428 (515)
|+|.+.|. +|.=..+|-+.-+++..+-+.
T Consensus 153 ~g~~~i~l~-Dt~G~~~P~~v~~~~~~~~~~ 182 (262)
T cd07948 153 LGVNRVGIA-DTVGIATPRQVYELVRTLRGV 182 (262)
T ss_pred cCCCEEEEC-CcCCCCCHHHHHHHHHHHHHh
Confidence 99998885 888888999888888777554
No 132
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=79.61 E-value=58 Score=32.42 Aligned_cols=143 Identities=12% Similarity=0.035 Sum_probs=85.3
Q ss_pred HHhhcchhcCCcEEEecccC----------CHHHHHHHHHHHHhcCCCceEEEE-------e---c---ChhhhhcHHHH
Q 010211 271 EDIKFGVDNQVDFYAVSFVK----------DAKVVHELKDYLKSCNADIHVIVK-------I---E---SADSIPNLHSI 327 (515)
Q Consensus 271 ~dI~~al~~gvD~ValSfVr----------sa~dv~~vr~~l~~~~~~i~IIaK-------I---E---t~~aveNldeI 327 (515)
+.++++.+.|.|+|=+++.. +.+++.++++.+++.|-.+.-+.- + + ..++++.+...
T Consensus 20 e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~ 99 (284)
T PRK13210 20 ERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKKA 99 (284)
T ss_pred HHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHHHH
Confidence 56677778999999887532 356788899999888765543310 1 1 12356677776
Q ss_pred Hhh-----cCeeEEcCCcccccC----CCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHh
Q 010211 328 ISA-----SDGAMVARGDLGAEL----PIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVRE 398 (515)
Q Consensus 328 l~~-----sDgImIgrgDLg~el----g~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~ 398 (515)
++. ++.|.+..++...+- .++.+....+++.+.+.++|..+.+ |.|-....++.++..++...+
T Consensus 100 i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~l-----E~~~~~~~~~~~~~~~l~~~v-- 172 (284)
T PRK13210 100 IRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAV-----EIMDTPFMNSISKWKKWDKEI-- 172 (284)
T ss_pred HHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEE-----EecCccccCCHHHHHHHHHHc--
Confidence 665 577777544322111 1234555667788888889986664 444333455666666666665
Q ss_pred CCcEEeeccccc----CCCCHHHHHH
Q 010211 399 GADAVMLSGETA----HGKFPLKAVK 420 (515)
Q Consensus 399 G~D~vmLs~ETa----~G~yPveaV~ 420 (515)
+.+.+-+.-++. .|..|.+.++
T Consensus 173 ~~~~~~~~~D~~h~~~~~~~~~~~l~ 198 (284)
T PRK13210 173 DSPWLTVYPDVGNLSAWGNDVWSELK 198 (284)
T ss_pred CCCceeEEecCChhhhcCCCHHHHHH
Confidence 344454444442 3555655443
No 133
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=79.53 E-value=21 Score=37.18 Aligned_cols=125 Identities=15% Similarity=0.236 Sum_probs=83.9
Q ss_pred HHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccc--
Q 010211 299 KDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNML-- 375 (515)
Q Consensus 299 r~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmL-- 375 (515)
+.+.++.+-.++|....... .++.+.+.+.. .+.||+---+| ++++....-+++.+.|++.|.++=..-.-+
T Consensus 68 ~~~a~~~~~~vPV~lHLDH~-~~~~i~~ai~~GftSVm~d~S~l----~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g 142 (293)
T PRK07315 68 ENLVESMGITVPVAIHLDHG-HYEDALECIEVGYTSIMFDGSHL----PVEENLKLAKEVVEKAHAKGISVEAEVGTIGG 142 (293)
T ss_pred HHHHHHcCCCCcEEEECCCC-CHHHHHHHHHcCCCEEEEcCCCC----CHHHHHHHHHHHHHHHHHcCCEEEEecCcccC
Confidence 33444433367899999998 67766666666 89999975544 678888999999999999999983322211
Q ss_pred -cccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHH----HHHHHHHHHHHHH
Q 010211 376 -ESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPL----KAVKVMHTVALRT 429 (515)
Q Consensus 376 -eSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPv----eaV~~m~~I~~~a 429 (515)
|-++..... .....+...++..|+|++-++--|..|.||- --.+.+.+|....
T Consensus 143 ~ed~~~g~s~-~t~peea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~ 200 (293)
T PRK07315 143 EEDGIIGKGE-LAPIEDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAV 200 (293)
T ss_pred cCccccCccC-CCCHHHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhc
Confidence 222221111 1123345577789999999998899999964 3355666666555
No 134
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=79.13 E-value=56 Score=33.22 Aligned_cols=130 Identities=18% Similarity=0.195 Sum_probs=75.4
Q ss_pred HhhcchhcCCcEEEeccc-CCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCC
Q 010211 272 DIKFGVDNQVDFYAVSFV-KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIED 349 (515)
Q Consensus 272 dI~~al~~gvD~ValSfV-rsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e~ 349 (515)
.+..+...|+|+|.+--- .+.+++.++-++..+.| ..+++-+-|.+-+ +...+. +|.|.+..-||... . .+
T Consensus 125 qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lG--l~~lvevh~~~E~---~~A~~~gadiIgin~rdl~~~-~-~d 197 (260)
T PRK00278 125 QIYEARAAGADAILLIVAALDDEQLKELLDYAHSLG--LDVLVEVHDEEEL---ERALKLGAPLIGINNRNLKTF-E-VD 197 (260)
T ss_pred HHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcC--CeEEEEeCCHHHH---HHHHHcCCCEEEECCCCcccc-c-CC
Confidence 466777899999877422 24456666666655543 3444444454433 333333 79888887787543 2 12
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHH
Q 010211 350 VPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVM 422 (515)
Q Consensus 350 v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m 422 (515)
...-.+++.... .+.|++. ..+.-+.. |+..+...|+|+++.-+.-..-+.|.++++.+
T Consensus 198 -~~~~~~l~~~~p-~~~~vIa---------egGI~t~e---d~~~~~~~Gad~vlVGsaI~~~~dp~~~~~~l 256 (260)
T PRK00278 198 -LETTERLAPLIP-SDRLVVS---------ESGIFTPE---DLKRLAKAGADAVLVGESLMRADDPGAALREL 256 (260)
T ss_pred -HHHHHHHHHhCC-CCCEEEE---------EeCCCCHH---HHHHHHHcCCCEEEECHHHcCCCCHHHHHHHH
Confidence 223344433321 1335554 34444433 45566778999999866655667888888755
No 135
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=79.10 E-value=32 Score=36.75 Aligned_cols=117 Identities=23% Similarity=0.244 Sum_probs=77.8
Q ss_pred hhHHHhhcchhcCCcEEEeccc----------CCHHHHHHHHHHHHhcCCCceEEEEe----cChh-hhhcHHHHHhh-c
Q 010211 268 KDWEDIKFGVDNQVDFYAVSFV----------KDAKVVHELKDYLKSCNADIHVIVKI----ESAD-SIPNLHSIISA-S 331 (515)
Q Consensus 268 kD~~dI~~al~~gvD~ValSfV----------rsa~dv~~vr~~l~~~~~~i~IIaKI----Et~~-aveNldeIl~~-s 331 (515)
.+.++++.+++.|+|.|-+++- =+-+++.+..++..+.|.++.+..-+ +..+ ..+-++...+. +
T Consensus 14 g~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~Gv 93 (347)
T COG0826 14 GNLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGV 93 (347)
T ss_pred CCHHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCC
Confidence 4678889999999998887733 35577888888999888876654432 1111 13334454444 8
Q ss_pred CeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccc
Q 010211 332 DGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQ--KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGET 409 (515)
Q Consensus 332 DgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aG--KPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ET 409 (515)
|+|+++ |++ ++..+++.+ .|+.+.||+.= +-++ .+--+-..|+.-++|+.|.
T Consensus 94 Daviv~--Dpg--------------~i~l~~e~~p~l~ih~S~q~~v--------~N~~--~~~f~~~~G~~rvVl~rEl 147 (347)
T COG0826 94 DAVIVA--DPG--------------LIMLARERGPDLPIHVSTQANV--------TNAE--TAKFWKELGAKRVVLPREL 147 (347)
T ss_pred CEEEEc--CHH--------------HHHHHHHhCCCCcEEEeeeEec--------CCHH--HHHHHHHcCCEEEEeCccC
Confidence 999995 443 466788888 99999987421 1122 1223445599999999886
Q ss_pred c
Q 010211 410 A 410 (515)
Q Consensus 410 a 410 (515)
+
T Consensus 148 s 148 (347)
T COG0826 148 S 148 (347)
T ss_pred C
Confidence 5
No 136
>PRK09389 (R)-citramalate synthase; Provisional
Probab=79.05 E-value=83 Score=35.09 Aligned_cols=154 Identities=14% Similarity=0.121 Sum_probs=97.3
Q ss_pred CCHhhHHHh-hcchhcCCcEEEecc-cCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCe--eEEcCC
Q 010211 265 ITDKDWEDI-KFGVDNQVDFYAVSF-VKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDG--AMVARG 339 (515)
Q Consensus 265 ltekD~~dI-~~al~~gvD~ValSf-Vrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDg--ImIgrg 339 (515)
++..++..| +.-.+.|+|.|=+.| +.+..|...++...+ .+.+..+.+..-.. .+.++..++. .|. ++++-.
T Consensus 21 ~s~e~K~~ia~~L~~~Gv~~IE~G~p~~~~~d~e~v~~i~~-~~~~~~i~a~~r~~--~~di~~a~~~g~~~v~i~~~~S 97 (488)
T PRK09389 21 LTPEEKLEIARKLDELGVDVIEAGSAITSEGEREAIKAVTD-EGLNAEICSFARAV--KVDIDAALECDVDSVHLVVPTS 97 (488)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeCCcCCHHHHHHHHHHHh-cCCCcEEEeecccC--HHHHHHHHhCCcCEEEEEEccC
Confidence 356676555 444568999987654 567778777776554 34566777766543 2335555554 454 444444
Q ss_pred ccccc----CCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHH-HHhCCcEEeecccccCCCC
Q 010211 340 DLGAE----LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIA-VREGADAVMLSGETAHGKF 414 (515)
Q Consensus 340 DLg~e----lg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~Dvana-V~~G~D~vmLs~ETa~G~y 414 (515)
|+-.+ +..+++.....+.++.|+++|..|.+.. ....+.+..-+.+++.+ ...|+|.+.|. +|.=...
T Consensus 98 d~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~------ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~-DTvG~~~ 170 (488)
T PRK09389 98 DLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSG------EDASRADLDFLKELYKAGIEAGADRICFC-DTVGILT 170 (488)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEE------eeCCCCCHHHHHHHHHHHHhCCCCEEEEe-cCCCCcC
Confidence 54222 2235666777888899999998877643 12333333335555544 45699999985 8888889
Q ss_pred HHHHHHHHHHHHHH
Q 010211 415 PLKAVKVMHTVALR 428 (515)
Q Consensus 415 PveaV~~m~~I~~~ 428 (515)
|.+.-+.+..+...
T Consensus 171 P~~~~~lv~~l~~~ 184 (488)
T PRK09389 171 PEKTYELFKRLSEL 184 (488)
T ss_pred HHHHHHHHHHHHhh
Confidence 99888877776543
No 137
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=79.03 E-value=60 Score=34.80 Aligned_cols=155 Identities=14% Similarity=0.118 Sum_probs=94.4
Q ss_pred CCHhhHHHhhcc-hhcCCcEEEecccC-CHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCee--EEcCC
Q 010211 265 ITDKDWEDIKFG-VDNQVDFYAVSFVK-DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGA--MVARG 339 (515)
Q Consensus 265 ltekD~~dI~~a-l~~gvD~ValSfVr-sa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgI--mIgrg 339 (515)
+|.+++..|... .+.|+|.|=+.|-. +.++...++.+. +.+.+..+++-.-. -.+.++..++. +|.| ++.-.
T Consensus 23 ~s~e~k~~ia~~L~~~GV~~IE~G~p~~~~~~~e~i~~i~-~~~~~~~i~~~~r~--~~~di~~a~~~g~~~i~i~~~~S 99 (378)
T PRK11858 23 FTNEEKLAIARMLDEIGVDQIEAGFPAVSEDEKEAIKAIA-KLGLNASILALNRA--VKSDIDASIDCGVDAVHIFIATS 99 (378)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeCCCcChHHHHHHHHHH-hcCCCeEEEEEccc--CHHHHHHHHhCCcCEEEEEEcCC
Confidence 466777555443 46799998776543 334444454443 34555555555322 23345554544 5543 33344
Q ss_pred cccc----cCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHH-HHhCCcEEeecccccCCCC
Q 010211 340 DLGA----ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIA-VREGADAVMLSGETAHGKF 414 (515)
Q Consensus 340 DLg~----elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~Dvana-V~~G~D~vmLs~ETa~G~y 414 (515)
|+-. .+..++.....++.++.+++.|..|.+.. ....+-+...+.+++.. ...|+|.+.|. +|.=...
T Consensus 100 d~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~------ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~-DT~G~~~ 172 (378)
T PRK11858 100 DIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSA------EDASRTDLDFLIEFAKAAEEAGADRVRFC-DTVGILD 172 (378)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEe------ccCCCCCHHHHHHHHHHHHhCCCCEEEEe-ccCCCCC
Confidence 4311 12235667778889999999999887642 13333344445555444 45699999986 8888889
Q ss_pred HHHHHHHHHHHHHHH
Q 010211 415 PLKAVKVMHTVALRT 429 (515)
Q Consensus 415 PveaV~~m~~I~~~a 429 (515)
|.+.-+.+..+....
T Consensus 173 P~~v~~lv~~l~~~~ 187 (378)
T PRK11858 173 PFTMYELVKELVEAV 187 (378)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999988888887665
No 138
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=78.96 E-value=51 Score=36.76 Aligned_cols=160 Identities=14% Similarity=0.159 Sum_probs=100.5
Q ss_pred eeeeCCCccCCCCCCHhhHHHhhcc-hhcCCcEEEecc-cCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHh
Q 010211 252 HLNVRGKSANLPSITDKDWEDIKFG-VDNQVDFYAVSF-VKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIIS 329 (515)
Q Consensus 252 gVnlpg~~~~lp~ltekD~~dI~~a-l~~gvD~ValSf-Vrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~ 329 (515)
|-..|+.. +|.+|+..|... .+.|+|.|=+.| +.+..|...++.+... ..+..+.+-.-+ --+.+|.-++
T Consensus 12 G~Q~~g~~-----~s~e~K~~ia~~L~~~GV~~IEvG~p~~s~~d~e~v~~i~~~-~~~~~i~al~r~--~~~did~a~~ 83 (494)
T TIGR00973 12 GEQSPGAS-----LTVEEKLQIALALERLGVDIIEAGFPVSSPGDFEAVQRIART-VKNPRVCGLARC--VEKDIDAAAE 83 (494)
T ss_pred cCcCCCCC-----cCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHh-CCCCEEEEEcCC--CHHhHHHHHH
Confidence 44445544 467787666444 467999987765 4667888777666533 344555555432 1223343333
Q ss_pred h-----cCe--eEEcCCcccccC----CCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHH---HhHHHH-
Q 010211 330 A-----SDG--AMVARGDLGAEL----PIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE---VSDIAI- 394 (515)
Q Consensus 330 ~-----sDg--ImIgrgDLg~el----g~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAE---v~Dvan- 394 (515)
. .+. +++.-.|+-..- ..+++.....+.++.|+++|..|.+.. ...+|++ +.+++.
T Consensus 84 al~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~---------Ed~~r~d~~~l~~~~~~ 154 (494)
T TIGR00973 84 ALKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSC---------EDAGRTEIPFLARIVEA 154 (494)
T ss_pred hccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEc---------CCCCCCCHHHHHHHHHH
Confidence 2 222 344434443322 226677788899999999999887742 3445554 444444
Q ss_pred HHHhCCcEEeecccccCCCCHHHHHHHHHHHHHHH
Q 010211 395 AVREGADAVMLSGETAHGKFPLKAVKVMHTVALRT 429 (515)
Q Consensus 395 aV~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~a 429 (515)
+...|+|.+.|. +|.=+..|.+.-+.+..+.+..
T Consensus 155 ~~~~Ga~~i~l~-DTvG~~~P~~~~~~i~~l~~~~ 188 (494)
T TIGR00973 155 AINAGATTINIP-DTVGYALPAEYGNLIKGLRENV 188 (494)
T ss_pred HHHcCCCEEEeC-CCCCCCCHHHHHHHHHHHHHhh
Confidence 455699999985 8998999999888888887655
No 139
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=78.86 E-value=34 Score=35.27 Aligned_cols=132 Identities=18% Similarity=0.185 Sum_probs=67.8
Q ss_pred CCCCHhhHHHh--------hcchhcCCcEEEeccc-------------CCHHH------------HHHHHHHH-HhcCCC
Q 010211 263 PSITDKDWEDI--------KFGVDNQVDFYAVSFV-------------KDAKV------------VHELKDYL-KSCNAD 308 (515)
Q Consensus 263 p~ltekD~~dI--------~~al~~gvD~ValSfV-------------rsa~d------------v~~vr~~l-~~~~~~ 308 (515)
..+|..|++.+ +.+.+.|+|+|=+-.. +...| +.++-+.+ +..+.+
T Consensus 129 ~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d 208 (327)
T cd02803 129 REMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPD 208 (327)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 45788888666 3446689999866432 11111 11211122 223667
Q ss_pred ceEEEEecChh----------hhhcHHHHHhh-cCeeEEcCCcccccCCC----CCHHHHHHHHHHH-HHhcCCcEEEEe
Q 010211 309 IHVIVKIESAD----------SIPNLHSIISA-SDGAMVARGDLGAELPI----EDVPLLQEDIIRR-CRSMQKPVIVAT 372 (515)
Q Consensus 309 i~IIaKIEt~~----------aveNldeIl~~-sDgImIgrgDLg~elg~----e~v~~aqk~Ii~~-c~~aGKPvivAT 372 (515)
..|.+||.-.+ +++-+..+.+. +|.|-+..|+..-.... ..-.......++. .+..+.|++...
T Consensus 209 ~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G 288 (327)
T cd02803 209 FPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVG 288 (327)
T ss_pred ceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeC
Confidence 88999986432 22222333333 79998887765322110 0001111222222 334478988743
Q ss_pred ccccccccCCCcChHHHhHHHHHHHh-CCcEEeec
Q 010211 373 NMLESMIDHPTPTRAEVSDIAIAVRE-GADAVMLS 406 (515)
Q Consensus 373 qmLeSMi~~~~PtrAEv~DvanaV~~-G~D~vmLs 406 (515)
..-+.. ++..++.. |+|.|++.
T Consensus 289 ---------gi~t~~---~a~~~l~~g~aD~V~ig 311 (327)
T cd02803 289 ---------GIRDPE---VAEEILAEGKADLVALG 311 (327)
T ss_pred ---------CCCCHH---HHHHHHHCCCCCeeeec
Confidence 222332 34467777 79999985
No 140
>PLN02591 tryptophan synthase
Probab=78.86 E-value=56 Score=33.27 Aligned_cols=118 Identities=16% Similarity=0.173 Sum_probs=72.4
Q ss_pred HHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeE--EcCCcccccCCC-
Q 010211 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAM--VARGDLGAELPI- 347 (515)
Q Consensus 271 ~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgIm--IgrgDLg~elg~- 347 (515)
+-++.+.+.|+|++.++=.. .++..++.+.+++.|- ..|.-+=--..-+.+..|++.++|.+ |++ .|+. |.
T Consensus 97 ~F~~~~~~aGv~GviipDLP-~ee~~~~~~~~~~~gl--~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~--~GvT-G~~ 170 (250)
T PLN02591 97 KFMATIKEAGVHGLVVPDLP-LEETEALRAEAAKNGI--ELVLLTTPTTPTERMKAIAEASEGFVYLVSS--TGVT-GAR 170 (250)
T ss_pred HHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHHHcCC--eEEEEeCCCCCHHHHHHHHHhCCCcEEEeeC--CCCc-CCC
Confidence 34566678899999988543 4556666666665543 34444411112456889998876655 232 2222 22
Q ss_pred CCHHHHHHHHHHHHHh-cCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 348 EDVPLLQEDIIRRCRS-MQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 348 e~v~~aqk~Ii~~c~~-aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
..++...++.++.+++ .++|+.+- .+.-+.. ++..+...|+|++...
T Consensus 171 ~~~~~~~~~~i~~vk~~~~~Pv~vG---------FGI~~~e---~v~~~~~~GADGvIVG 218 (250)
T PLN02591 171 ASVSGRVESLLQELKEVTDKPVAVG---------FGISKPE---HAKQIAGWGADGVIVG 218 (250)
T ss_pred cCCchhHHHHHHHHHhcCCCceEEe---------CCCCCHH---HHHHHHhcCCCEEEEC
Confidence 2445666776777666 58998884 3444443 4556777889999974
No 141
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=78.80 E-value=41 Score=32.08 Aligned_cols=131 Identities=13% Similarity=0.064 Sum_probs=70.7
Q ss_pred hhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh----cCeeEEcCCcccccCC-C
Q 010211 273 IKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLGAELP-I 347 (515)
Q Consensus 273 I~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~----sDgImIgrgDLg~elg-~ 347 (515)
++.+.+.|+|+|.++.-. .....++.+. +....+-+.+- +.+|+.+. +|.|.+++-.=+..=+ .
T Consensus 74 ~~~a~~~gad~vh~~~~~--~~~~~~~~~~---~~~~~~g~~~~------t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~ 142 (212)
T PRK00043 74 VDLALAVGADGVHLGQDD--LPVADARALL---GPDAIIGLSTH------TLEEAAAALAAGADYVGVGPIFPTPTKKDA 142 (212)
T ss_pred HHHHHHcCCCEEecCccc--CCHHHHHHHc---CCCCEEEEeCC------CHHHHHHHhHcCCCEEEECCccCCCCCCCC
Confidence 455677899998775421 1223333322 23333333332 33343332 8999987543332111 0
Q ss_pred C-CH-HHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHHHH
Q 010211 348 E-DV-PLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTV 425 (515)
Q Consensus 348 e-~v-~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~I 425 (515)
. .. ....+++.+... ..|++... +. +. .++..+...|+|++.+.+.-..-+-|.++++.+.++
T Consensus 143 ~~~~g~~~~~~~~~~~~--~~~v~a~G---------GI-~~---~~i~~~~~~Ga~gv~~gs~i~~~~d~~~~~~~l~~~ 207 (212)
T PRK00043 143 KAPQGLEGLREIRAAVG--DIPIVAIG---------GI-TP---ENAPEVLEAGADGVAVVSAITGAEDPEAAARALLAA 207 (212)
T ss_pred CCCCCHHHHHHHHHhcC--CCCEEEEC---------Cc-CH---HHHHHHHHcCCCEEEEeHHhhcCCCHHHHHHHHHHH
Confidence 1 11 233333333221 28887742 22 32 356677888999999865544445699999988877
Q ss_pred HHHH
Q 010211 426 ALRT 429 (515)
Q Consensus 426 ~~~a 429 (515)
..++
T Consensus 208 ~~~~ 211 (212)
T PRK00043 208 FRAA 211 (212)
T ss_pred Hhhc
Confidence 6554
No 142
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=78.48 E-value=22 Score=33.77 Aligned_cols=118 Identities=15% Similarity=0.124 Sum_probs=64.9
Q ss_pred CHhhHHHhhcchhcCCcEEEe--cccCCHHHHHHHHHHHHhcCCCceEEE--EecChhhhhcHHHHHhh-cCeeEEcCCc
Q 010211 266 TDKDWEDIKFGVDNQVDFYAV--SFVKDAKVVHELKDYLKSCNADIHVIV--KIESADSIPNLHSIISA-SDGAMVARGD 340 (515)
Q Consensus 266 tekD~~dI~~al~~gvD~Val--SfVrsa~dv~~vr~~l~~~~~~i~IIa--KIEt~~aveNldeIl~~-sDgImIgrgD 340 (515)
+.++...+..++..+++++=+ +|... .....++.+-+ ...+..+++ |+.+.. -.-+++..+. +|++.+-
T Consensus 11 ~~~~~~~~~~~l~~~i~~ieig~~~~~~-~g~~~i~~i~~-~~~~~~i~~~~~v~~~~-~~~~~~~~~aGad~i~~h--- 84 (202)
T cd04726 11 DLEEALELAKKVPDGVDIIEAGTPLIKS-EGMEAVRALRE-AFPDKIIVADLKTADAG-ALEAEMAFKAGADIVTVL--- 84 (202)
T ss_pred CHHHHHHHHHHhhhcCCEEEcCCHHHHH-hCHHHHHHHHH-HCCCCEEEEEEEecccc-HHHHHHHHhcCCCEEEEE---
Confidence 344555554444445888766 45322 12223333222 223455665 666552 1123555555 8888873
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 341 LGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 341 Lg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
.+..+...+++++.|+++|++++++. . ...|..| ...+...|+|.+.+.
T Consensus 85 ------~~~~~~~~~~~i~~~~~~g~~~~v~~-------~-~~~t~~e---~~~~~~~~~d~v~~~ 133 (202)
T cd04726 85 ------GAAPLSTIKKAVKAAKKYGKEVQVDL-------I-GVEDPEK---RAKLLKLGVDIVILH 133 (202)
T ss_pred ------eeCCHHHHHHHHHHHHHcCCeEEEEE-------e-CCCCHHH---HHHHHHCCCCEEEEc
Confidence 11223456889999999999999731 0 1123333 334677799998873
No 143
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=78.43 E-value=49 Score=36.01 Aligned_cols=133 Identities=16% Similarity=0.119 Sum_probs=79.6
Q ss_pred hhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcC-CcccccCCCCCHH
Q 010211 273 IKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVAR-GDLGAELPIEDVP 351 (515)
Q Consensus 273 I~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgr-gDLg~elg~e~v~ 351 (515)
++.+.+.|+|++.+...-..+.+....+.+++.|..+.+ -.+.....++.++++....|.+.+.+ -|=+ +.+...
T Consensus 243 v~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~GikvgV-D~lnp~tp~e~i~~l~~~vD~Vllht~vdp~---~~~~~~ 318 (391)
T PRK13307 243 ARMAADATADAVVISGLAPISTIEKAIHEAQKTGIYSIL-DMLNVEDPVKLLESLKVKPDVVELHRGIDEE---GTEHAW 318 (391)
T ss_pred HHHHHhcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEE-EEcCCCCHHHHHHHhhCCCCEEEEccccCCC---cccchH
Confidence 445568899999988755555677777777777654444 03333345566777765689998886 2322 111111
Q ss_pred HHHHHHHHHHHh--cCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHHHHH
Q 010211 352 LLQEDIIRRCRS--MQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVA 426 (515)
Q Consensus 352 ~aqk~Ii~~c~~--aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~I~ 426 (515)
++| +..++ .+.++.++. --+ ...+..++..|+|.+.+.+--..-+-|.++++.+.+.+
T Consensus 319 ---~kI-~~ikk~~~~~~I~VdG----------GI~---~eti~~l~~aGADivVVGsaIf~a~Dp~~aak~l~~~i 378 (391)
T PRK13307 319 ---GNI-KEIKKAGGKILVAVAG----------GVR---VENVEEALKAGADILVVGRAITKSKDVRRAAEDFLNKL 378 (391)
T ss_pred ---HHH-HHHHHhCCCCcEEEEC----------CcC---HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHhh
Confidence 122 22333 244566542 222 22355778899999887644333456999998887765
No 144
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=77.94 E-value=43 Score=33.25 Aligned_cols=152 Identities=16% Similarity=0.161 Sum_probs=89.6
Q ss_pred CCCCCHhhHHHh-hcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEcCC
Q 010211 262 LPSITDKDWEDI-KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARG 339 (515)
Q Consensus 262 lp~ltekD~~dI-~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrg 339 (515)
-|..|++|.+.+ +.+.++|+..|+++ +..+..+++.|+ +.++.+.+=|==|.|-...+.-+.. -+++--|-.
T Consensus 12 ~p~~t~~~i~~lc~~A~~~~~~avcv~----p~~v~~a~~~l~--~~~v~v~tVigFP~G~~~~~~K~~E~~~Av~~GAd 85 (211)
T TIGR00126 12 KADTTEEDIITLCAQAKTYKFAAVCVN----PSYVPLAKELLK--GTEVRICTVVGFPLGASTTDVKLYETKEAIKYGAD 85 (211)
T ss_pred CCCCCHHHHHHHHHHHHhhCCcEEEeC----HHHHHHHHHHcC--CCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCCC
Confidence 367788888555 77888999988764 667888888885 4568888778666666655443332 111111111
Q ss_pred --cccccCCC------CCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHH-HHHHHhCCcEEeeccccc
Q 010211 340 --DLGAELPI------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDI-AIAVREGADAVMLSGETA 410 (515)
Q Consensus 340 --DLg~elg~------e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~Dv-anaV~~G~D~vmLs~ETa 410 (515)
|+-+.+|. ..+..-.++|.+.|. |+|+-+ +||. +.-+..|+... --++..|+|.+=-|.-=+
T Consensus 86 EiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~--g~~lKv---IlE~----~~L~~~ei~~a~~ia~eaGADfvKTsTGf~ 156 (211)
T TIGR00126 86 EVDMVINIGALKDGNEEVVYDDIRAVVEACA--GVLLKV---IIET----GLLTDEEIRKACEICIDAGADFVKTSTGFG 156 (211)
T ss_pred EEEeecchHhhhCCcHHHHHHHHHHHHHHcC--CCeEEE---EEec----CCCCHHHHHHHHHHHHHhCCCEEEeCCCCC
Confidence 22223332 345555566666664 788765 3442 33444564443 345678999986652111
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 010211 411 HGKFPLKAVKVMHTVALR 428 (515)
Q Consensus 411 ~G~yPveaV~~m~~I~~~ 428 (515)
.+.=-++.|+.|.+++..
T Consensus 157 ~~gat~~dv~~m~~~v~~ 174 (211)
T TIGR00126 157 AGGATVEDVRLMRNTVGD 174 (211)
T ss_pred CCCCCHHHHHHHHHHhcc
Confidence 122235888889888763
No 145
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=77.73 E-value=17 Score=36.86 Aligned_cols=99 Identities=19% Similarity=0.259 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEE
Q 010211 292 AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIV 370 (515)
Q Consensus 292 a~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPviv 370 (515)
.+++.++.+|.++. .+..++ |+=..+.+|.+.+. ++.+=||-+||. . -.+++.+.+.|||+|+
T Consensus 55 ~e~~~~L~~~~~~~--gi~f~s---tpfd~~s~d~l~~~~~~~~KIaS~dl~------n-----~~lL~~~A~tgkPvIl 118 (241)
T PF03102_consen 55 EEQHKELFEYCKEL--GIDFFS---TPFDEESVDFLEELGVPAYKIASGDLT------N-----LPLLEYIAKTGKPVIL 118 (241)
T ss_dssp HHHHHHHHHHHHHT--T-EEEE---EE-SHHHHHHHHHHT-SEEEE-GGGTT------------HHHHHHHHTT-S-EEE
T ss_pred HHHHHHHHHHHHHc--CCEEEE---CCCCHHHHHHHHHcCCCEEEecccccc------C-----HHHHHHHHHhCCcEEE
Confidence 45566666776654 344555 33344444555444 889999988885 2 2356778889999999
Q ss_pred EeccccccccCCCcChHHHhHHHHHH-HhCCcEEeecccccCCCCHHH
Q 010211 371 ATNMLESMIDHPTPTRAEVSDIAIAV-REGADAVMLSGETAHGKFPLK 417 (515)
Q Consensus 371 ATqmLeSMi~~~~PtrAEv~DvanaV-~~G~D~vmLs~ETa~G~yPve 417 (515)
.| +.-|-+|+.+..+.+ ..|.+-+.|-. -+..||..
T Consensus 119 ST---------G~stl~EI~~Av~~~~~~~~~~l~llH--C~s~YP~~ 155 (241)
T PF03102_consen 119 ST---------GMSTLEEIERAVEVLREAGNEDLVLLH--CVSSYPTP 155 (241)
T ss_dssp E----------TT--HHHHHHHHHHHHHHCT--EEEEE--E-SSSS--
T ss_pred EC---------CCCCHHHHHHHHHHHHhcCCCCEEEEe--cCCCCCCC
Confidence 77 778889999999988 55554444321 24577743
No 146
>PRK08005 epimerase; Validated
Probab=77.55 E-value=58 Score=32.35 Aligned_cols=133 Identities=8% Similarity=0.039 Sum_probs=84.1
Q ss_pred HHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCC---
Q 010211 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPI--- 347 (515)
Q Consensus 271 ~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~--- 347 (515)
..|+.-.+.|+|.|.+- ++...+..+.-+++++.|.+..+..+-+|+ ++.++.++..+|.|+| ++++=|+
T Consensus 72 ~~i~~~~~~gad~It~H-~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp--~~~i~~~l~~vD~Vlv----MsV~PGf~GQ 144 (210)
T PRK08005 72 RWLPWLAAIRPGWIFIH-AESVQNPSEILADIRAIGAKAGLALNPATP--LLPYRYLALQLDALMI----MTSEPDGRGQ 144 (210)
T ss_pred HHHHHHHHhCCCEEEEc-ccCccCHHHHHHHHHHcCCcEEEEECCCCC--HHHHHHHHHhcCEEEE----EEecCCCccc
Confidence 34555567899999874 576667777778899999999999999984 7778999999999998 4555554
Q ss_pred CCHHHHHHHHHHHHHhcCC-cEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHH
Q 010211 348 EDVPLLQEDIIRRCRSMQK-PVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMH 423 (515)
Q Consensus 348 e~v~~aqk~Ii~~c~~aGK-PvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~ 423 (515)
.-++...++|-+..+.... .+-+ . +--+... +...+..|+|.+.+.+---..+-|.++++.|.
T Consensus 145 ~f~~~~~~KI~~l~~~~~~~~I~V---------D-GGI~~~~---i~~l~~aGad~~V~GsaiF~~~d~~~~~~~~~ 208 (210)
T PRK08005 145 QFIAAMCEKVSQSREHFPAAECWA---------D-GGITLRA---ARLLAAAGAQHLVIGRALFTTANYDVTLSQFT 208 (210)
T ss_pred eecHHHHHHHHHHHHhcccCCEEE---------E-CCCCHHH---HHHHHHCCCCEEEEChHhhCCCCHHHHHHHHh
Confidence 2355555555554433222 2222 1 2222222 33567789998887522112334666666553
No 147
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=77.42 E-value=90 Score=31.98 Aligned_cols=127 Identities=19% Similarity=0.252 Sum_probs=67.1
Q ss_pred HhhH-HHhhcchhcC-CcEEEe------------cccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh--
Q 010211 267 DKDW-EDIKFGVDNQ-VDFYAV------------SFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-- 330 (515)
Q Consensus 267 ekD~-~dI~~al~~g-vD~Val------------SfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-- 330 (515)
.+|. +..+.+.+.| +|+|=+ .+-++.+.+.++-+.+++.- ++.|++||=- .++++.++++.
T Consensus 103 ~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~--~~~~~~~~a~~l~ 179 (301)
T PRK07259 103 EEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTP--NVTDIVEIAKAAE 179 (301)
T ss_pred HHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcCC--CchhHHHHHHHHH
Confidence 3444 3334555677 898854 22233444444444444332 6889999951 23445555543
Q ss_pred ---cCeeEE-----cCC-ccc-------ccC----CCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHh
Q 010211 331 ---SDGAMV-----ARG-DLG-------AEL----PIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVS 390 (515)
Q Consensus 331 ---sDgImI-----grg-DLg-------~el----g~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~ 390 (515)
+|+|.+ |+. |+- ... |....+...+.+-+..+..++|++.. .+.-+. .
T Consensus 180 ~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~---------GGI~~~---~ 247 (301)
T PRK07259 180 EAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGM---------GGISSA---E 247 (301)
T ss_pred HcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEE---------CCCCCH---H
Confidence 688865 221 221 111 11112223344444444558998873 333332 3
Q ss_pred HHHHHHHhCCcEEeeccc
Q 010211 391 DIAIAVREGADAVMLSGE 408 (515)
Q Consensus 391 DvanaV~~G~D~vmLs~E 408 (515)
|+..++..|+|+|++..-
T Consensus 248 da~~~l~aGAd~V~igr~ 265 (301)
T PRK07259 248 DAIEFIMAGASAVQVGTA 265 (301)
T ss_pred HHHHHHHcCCCceeEcHH
Confidence 566888899999998644
No 148
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=77.33 E-value=55 Score=35.96 Aligned_cols=123 Identities=18% Similarity=0.120 Sum_probs=69.1
Q ss_pred HHHhhcchhcCCcEEEecc-cCCHHHHHHHHHH-HH--hc---CCCceEEEEecChhhh--------------------h
Q 010211 270 WEDIKFGVDNQVDFYAVSF-VKDAKVVHELKDY-LK--SC---NADIHVIVKIESADSI--------------------P 322 (515)
Q Consensus 270 ~~dI~~al~~gvD~ValSf-Vrsa~dv~~vr~~-l~--~~---~~~i~IIaKIEt~~av--------------------e 322 (515)
.+.++..++.|++.|..|. ..-...+...+.. +. .. .....|++|+-+++-. .
T Consensus 85 ~~~v~l~le~gV~~ve~sa~~~~~p~~~~~r~~G~~~~~~g~~~~~~~ViakVsr~evAs~~f~ppp~~~v~~L~~~G~i 164 (418)
T cd04742 85 EGLVDLFLRHGVRVVEASAFMQLTPALVRYRAKGLRRDADGRVQIANRIIAKVSRPEVAEAFMSPAPERILKKLLAEGKI 164 (418)
T ss_pred HHHHHHHHHcCCCEEEeccccCCCcchhhHHhcCCcccccccccccceEEEecCChhhhhhhcCCCCHHHHHHHHHcCCC
Confidence 3556778899999887764 2222222122211 00 00 0114589998765433 1
Q ss_pred cHHHHHhh-----cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhc--------CCcEEEEeccccccccCCCcChHHH
Q 010211 323 NLHSIISA-----SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSM--------QKPVIVATNMLESMIDHPTPTRAEV 389 (515)
Q Consensus 323 NldeIl~~-----sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~a--------GKPvivATqmLeSMi~~~~PtrAEv 389 (515)
+.+|-... +|.|.+. .|=|-+.|-.......-.|.+.+.+. ..|||.|. +.-|..
T Consensus 165 t~~eA~~A~~~g~aD~Ivvq-~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAG---------GI~tg~-- 232 (418)
T cd04742 165 TEEQAELARRVPVADDITVE-ADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAG---------GIGTPE-- 232 (418)
T ss_pred CHHHHHHHHhCCCCCEEEEc-ccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEEC---------CCCCHH--
Confidence 22222222 5899988 78877766433333444444443332 58998864 444433
Q ss_pred hHHHHHHHhCCcEEee
Q 010211 390 SDIAIAVREGADAVML 405 (515)
Q Consensus 390 ~DvanaV~~G~D~vmL 405 (515)
+++-++..|+|+|++
T Consensus 233 -~vaAA~alGAd~V~~ 247 (418)
T cd04742 233 -AAAAAFALGADFIVT 247 (418)
T ss_pred -HHHHHHHcCCcEEee
Confidence 577889999999986
No 149
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=77.01 E-value=16 Score=36.83 Aligned_cols=97 Identities=16% Similarity=0.180 Sum_probs=57.6
Q ss_pred HHhhcchhcCCcEEEec------ccCCHHHHHHH-HHHHHhcCCCceEEEEecC---hhhhhcHHHHHhh-cCeeEEcCC
Q 010211 271 EDIKFGVDNQVDFYAVS------FVKDAKVVHEL-KDYLKSCNADIHVIVKIES---ADSIPNLHSIISA-SDGAMVARG 339 (515)
Q Consensus 271 ~dI~~al~~gvD~ValS------fVrsa~dv~~v-r~~l~~~~~~i~IIaKIEt---~~aveNldeIl~~-sDgImIgrg 339 (515)
+.+++.++.|+|+|.+. +.-+.++-.++ +...+..+.++.|++.+=+ .++++-.....+. +|++|+.+-
T Consensus 22 ~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP 101 (281)
T cd00408 22 RLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPP 101 (281)
T ss_pred HHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCC
Confidence 55678889999998753 11223333333 3334445667899998843 3344444444444 899999876
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 010211 340 DLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (515)
Q Consensus 340 DLg~elg~e~v~~aqk~Ii~~c~~aGKPvivA 371 (515)
.... .+-+.+....+.|. .+.+.|+++.
T Consensus 102 ~y~~-~~~~~~~~~~~~ia---~~~~~pi~iY 129 (281)
T cd00408 102 YYNK-PSQEGIVAHFKAVA---DASDLPVILY 129 (281)
T ss_pred cCCC-CCHHHHHHHHHHHH---hcCCCCEEEE
Confidence 5433 22244544445554 4478999984
No 150
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=76.09 E-value=45 Score=33.30 Aligned_cols=135 Identities=13% Similarity=0.197 Sum_probs=70.3
Q ss_pred hhHHHhhcchhcCCcEEEecc--cCCHHHHHHHHHHHHhcCCCceE-------EEEecCh-hhhhcHHHHHh----h-cC
Q 010211 268 KDWEDIKFGVDNQVDFYAVSF--VKDAKVVHELKDYLKSCNADIHV-------IVKIESA-DSIPNLHSIIS----A-SD 332 (515)
Q Consensus 268 kD~~dI~~al~~gvD~ValSf--Vrsa~dv~~vr~~l~~~~~~i~I-------IaKIEt~-~aveNldeIl~----~-sD 332 (515)
++.+|++..+..|++-+.++- +++++-+.+ ..+..++++.+ ..|+... +.-.++.++++ . ++
T Consensus 85 rs~edv~~~l~~Ga~kvviGs~~l~~p~l~~~---i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~ 161 (241)
T PRK14024 85 RDDESLEAALATGCARVNIGTAALENPEWCAR---VIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCS 161 (241)
T ss_pred CCHHHHHHHHHCCCCEEEECchHhCCHHHHHH---HHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCC
Confidence 355777777888999876653 244444444 44333444322 1111100 01112333333 2 56
Q ss_pred eeEEc-CCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccC
Q 010211 333 GAMVA-RGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAH 411 (515)
Q Consensus 333 gImIg-rgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~ 411 (515)
.+++- +.==+..-|+ ++ ...+++ ++....|++.+ .+.-+..++.........|+|++|+..---.
T Consensus 162 ~iiv~~~~~~g~~~G~-d~-~~i~~i---~~~~~ipvias---------GGi~s~~D~~~l~~~~~~GvdgV~igra~~~ 227 (241)
T PRK14024 162 RYVVTDVTKDGTLTGP-NL-ELLREV---CARTDAPVVAS---------GGVSSLDDLRALAELVPLGVEGAIVGKALYA 227 (241)
T ss_pred EEEEEeecCCCCccCC-CH-HHHHHH---HhhCCCCEEEe---------CCCCCHHHHHHHhhhccCCccEEEEeHHHHc
Confidence 66664 2111112232 32 233444 34568999984 3455544444443333469999999877778
Q ss_pred CCCHHHHH
Q 010211 412 GKFPLKAV 419 (515)
Q Consensus 412 G~yPveaV 419 (515)
|.++++-.
T Consensus 228 g~~~~~~~ 235 (241)
T PRK14024 228 GAFTLPEA 235 (241)
T ss_pred CCCCHHHH
Confidence 99987754
No 151
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=75.73 E-value=5.6 Score=41.76 Aligned_cols=48 Identities=21% Similarity=0.373 Sum_probs=39.6
Q ss_pred EEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHH
Q 010211 103 IVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEY 150 (515)
Q Consensus 103 Ii~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~ 150 (515)
+.+.+|+..+..+.++.++++|++++=+|++||..+.+.++|+.+|+.
T Consensus 85 v~~~~~~~~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~ 132 (325)
T cd00381 85 VGAAVGTREDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKK 132 (325)
T ss_pred EEEecCCChhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 445566655678899999999999999999999998888888877753
No 152
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=75.59 E-value=33 Score=34.16 Aligned_cols=134 Identities=12% Similarity=0.021 Sum_probs=75.2
Q ss_pred hhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCCHH
Q 010211 273 IKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVP 351 (515)
Q Consensus 273 I~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e~v~ 351 (515)
++.+++.|+|+|-++ ++-.++.++++.+. .+. +|- +=+....++..+..+. +|.+.+||- ... .....-+
T Consensus 80 ~dlA~~~~adGVHLg--~~d~~~~~~r~~~~---~~~-iiG-~s~~~s~~~a~~A~~~gaDYv~~Gpv-~t~-tK~~~~p 150 (221)
T PRK06512 80 SRIAGRVKADGLHIE--GNLAALAEAIEKHA---PKM-IVG-FGNLRDRHGAMEIGELRPDYLFFGKL-GAD-NKPEAHP 150 (221)
T ss_pred HHHHHHhCCCEEEEC--ccccCHHHHHHhcC---CCC-EEE-ecCCCCHHHHHHhhhcCCCEEEECCC-CCC-CCCCCCC
Confidence 344566788988776 22234556666552 222 222 1111122222222223 899999987 332 1111111
Q ss_pred HHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHHHHHHH
Q 010211 352 LLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALR 428 (515)
Q Consensus 352 ~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~ 428 (515)
.-...+-+.|+...+||+.- .+. +. .++......|+|++.+.+.--.-+.|.++++-+.++...
T Consensus 151 ~gl~~l~~~~~~~~iPvvAI---------GGI-~~---~n~~~~~~~GA~giAvisai~~~~dp~~a~~~~~~~~~~ 214 (221)
T PRK06512 151 RNLSLAEWWAEMIEIPCIVQ---------AGS-DL---ASAVEVAETGAEFVALERAVFDAHDPPLAVAQANALLDE 214 (221)
T ss_pred CChHHHHHHHHhCCCCEEEE---------eCC-CH---HHHHHHHHhCCCEEEEhHHhhCCCCHHHHHHHHHHHHhh
Confidence 11112223566778998762 222 22 244567788999999988777778899999988887653
No 153
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=75.23 E-value=22 Score=36.94 Aligned_cols=117 Identities=16% Similarity=0.217 Sum_probs=79.1
Q ss_pred CceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEE----EEeccccccccCC
Q 010211 308 DIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVI----VATNMLESMIDHP 382 (515)
Q Consensus 308 ~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvi----vATqmLeSMi~~~ 382 (515)
.++|...+....-++.+..-+.. .+-||+. +-.+++++=...-+++++.|+++|.+|= .-..-=+.....
T Consensus 77 ~VPV~lHLDHg~~~e~i~~ai~~GftSVM~D----gS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~- 151 (285)
T PRK07709 77 TVPVAIHLDHGSSFEKCKEAIDAGFTSVMID----ASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAE- 151 (285)
T ss_pred CCcEEEECCCCCCHHHHHHHHHcCCCEEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccc-
Confidence 37899999998876666665555 7899996 3356888888899999999999999971 110000110000
Q ss_pred CcChHHHhHHHHHHH-hCCcEEeecccccCCCC---HHHHHHHHHHHHHHH
Q 010211 383 TPTRAEVSDIAIAVR-EGADAVMLSGETAHGKF---PLKAVKVMHTVALRT 429 (515)
Q Consensus 383 ~PtrAEv~DvanaV~-~G~D~vmLs~ETa~G~y---PveaV~~m~~I~~~a 429 (515)
.-......+...|+. -|+|++..+--|+.|.| |---.+.+.+|..+.
T Consensus 152 ~~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~ 202 (285)
T PRK07709 152 GVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFT 202 (285)
T ss_pred cccCCCHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHH
Confidence 000112234456775 59999999999999999 656667777776655
No 154
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=75.06 E-value=78 Score=30.09 Aligned_cols=136 Identities=18% Similarity=0.176 Sum_probs=77.0
Q ss_pred HHhhcchhcCCcEEEec-----ccCC-HHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccc
Q 010211 271 EDIKFGVDNQVDFYAVS-----FVKD-AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGA 343 (515)
Q Consensus 271 ~dI~~al~~gvD~ValS-----fVrs-a~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~ 343 (515)
++++.+.+.|+|.|.+- |+.+ ......++++-+..+..+.+-.|+...+ +-++.+.+. +||+.+- +
T Consensus 15 ~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~--~~~~~~~~~gadgv~vh-~---- 87 (210)
T TIGR01163 15 EEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVENPD--RYIEDFAEAGADIITVH-P---- 87 (210)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCCHH--HHHHHHHHcCCCEEEEc-c----
Confidence 56677778899999884 6544 3333334443322222333446766543 446666655 8998883 1
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecc--cccC-CCCHHHHHH
Q 010211 344 ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG--ETAH-GKFPLKAVK 420 (515)
Q Consensus 344 elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~--ETa~-G~yPveaV~ 420 (515)
+.+ ....+.++.+++.|..+++.. ++. +..| ....+..++|.+++.+ .+.. .+++-+.++
T Consensus 88 --~~~---~~~~~~~~~~~~~g~~~~~~~--------~~~-t~~e---~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~ 150 (210)
T TIGR01163 88 --EAS---EHIHRLLQLIKDLGAKAGIVL--------NPA-TPLE---FLEYVLPDVDLVLLMSVNPGFGGQKFIPDTLE 150 (210)
T ss_pred --CCc---hhHHHHHHHHHHcCCcEEEEE--------CCC-CCHH---HHHHHHhhCCEEEEEEEcCCCCcccccHHHHH
Confidence 111 223566788999998887742 111 2222 2345566789887632 1222 356667777
Q ss_pred HHHHHHHHHh
Q 010211 421 VMHTVALRTE 430 (515)
Q Consensus 421 ~m~~I~~~aE 430 (515)
.++++.+...
T Consensus 151 ~i~~i~~~~~ 160 (210)
T TIGR01163 151 KIREVRKMID 160 (210)
T ss_pred HHHHHHHHHH
Confidence 7766655544
No 155
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=75.05 E-value=15 Score=37.61 Aligned_cols=97 Identities=11% Similarity=0.119 Sum_probs=57.6
Q ss_pred HHhhcchhc-CCcEEEec------ccCCHHHHHH-HHHHHHhcCCCceEEEEec---ChhhhhcHHHHHhh-cCeeEEcC
Q 010211 271 EDIKFGVDN-QVDFYAVS------FVKDAKVVHE-LKDYLKSCNADIHVIVKIE---SADSIPNLHSIISA-SDGAMVAR 338 (515)
Q Consensus 271 ~dI~~al~~-gvD~ValS------fVrsa~dv~~-vr~~l~~~~~~i~IIaKIE---t~~aveNldeIl~~-sDgImIgr 338 (515)
+.+++.++. |+++|.+. +.-+.++-.+ ++...+..+.++.||+.+- |.++++......+. +|++|+.+
T Consensus 25 ~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~ 104 (288)
T cd00954 25 AIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAIT 104 (288)
T ss_pred HHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 555788889 99998663 1112222222 3334445566789999885 45666666555555 89999865
Q ss_pred CcccccCCCCCHHHHHHHHHHHHHhc-CCcEEEE
Q 010211 339 GDLGAELPIEDVPLLQEDIIRRCRSM-QKPVIVA 371 (515)
Q Consensus 339 gDLg~elg~e~v~~aqk~Ii~~c~~a-GKPvivA 371 (515)
-.... ..-+++....+.| |.+. +.|+++.
T Consensus 105 P~y~~-~~~~~i~~~~~~v---~~a~~~lpi~iY 134 (288)
T cd00954 105 PFYYK-FSFEEIKDYYREI---IAAAASLPMIIY 134 (288)
T ss_pred CCCCC-CCHHHHHHHHHHH---HHhcCCCCEEEE
Confidence 43311 2223444444444 5566 8999985
No 156
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=74.30 E-value=94 Score=35.07 Aligned_cols=170 Identities=15% Similarity=0.107 Sum_probs=104.0
Q ss_pred ceeeeCCCccCCCCCCHhhHHHhhc-chhcCCcEEEecc-cCCHHHHHHHHHHHHhcCCCceEEEEec-Chhhh--h---
Q 010211 251 RHLNVRGKSANLPSITDKDWEDIKF-GVDNQVDFYAVSF-VKDAKVVHELKDYLKSCNADIHVIVKIE-SADSI--P--- 322 (515)
Q Consensus 251 KgVnlpg~~~~lp~ltekD~~dI~~-al~~gvD~ValSf-Vrsa~dv~~vr~~l~~~~~~i~IIaKIE-t~~av--e--- 322 (515)
-|-.-|+.. +|.+++..|.. -.+.|+|.|=+.| .-++.|...++...+..-++..|.+..= ..+.+ +
T Consensus 11 DG~Q~~g~~-----~s~eeKl~Ia~~L~~~GVd~IE~G~p~~s~~d~~~v~~i~~~~~~~~~i~~~~r~~r~~~~~~~d~ 85 (526)
T TIGR00977 11 DGAQREGVS-----FSLEDKIRIAERLDDLGIHYIEGGWPGANPKDVQFFWQLKEMNFKNAKIVAFCSTRRPHKKVEEDK 85 (526)
T ss_pred CCCCCCCCC-----CCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchHH
Confidence 344455554 46677765643 4568999996654 3578888888876643223455666552 22222 2
Q ss_pred cHHHHHhh-cCe--eEEcCCcccccC----CCCCHHHHHHHHHHHHHhcCCcEEE-EeccccccccCCCcChHHHhHHHH
Q 010211 323 NLHSIISA-SDG--AMVARGDLGAEL----PIEDVPLLQEDIIRRCRSMQKPVIV-ATNMLESMIDHPTPTRAEVSDIAI 394 (515)
Q Consensus 323 NldeIl~~-sDg--ImIgrgDLg~el----g~e~v~~aqk~Ii~~c~~aGKPviv-ATqmLeSMi~~~~PtrAEv~Dvan 394 (515)
.++..+.. .+. +++.--|+-.+. ..+++.....+.++.++.+|..|.. ++++.+.. +-+...+.+++.
T Consensus 86 ~~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~----r~~~~~l~~~~~ 161 (526)
T TIGR00977 86 MLQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGY----KANPEYALATLA 161 (526)
T ss_pred HHHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecc----cCCHHHHHHHHH
Confidence 24444444 343 334433443322 2367888888999999999998854 33332211 112223445544
Q ss_pred H-HHhCCcEEeecccccCCCCHHHHHHHHHHHHHHHh
Q 010211 395 A-VREGADAVMLSGETAHGKFPLKAVKVMHTVALRTE 430 (515)
Q Consensus 395 a-V~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE 430 (515)
+ ...|+|.+.|. +|.=+..|.+.-+.+..+.+...
T Consensus 162 ~a~~aGad~i~i~-DTvG~~~P~~v~~li~~l~~~~~ 197 (526)
T TIGR00977 162 TAQQAGADWLVLC-DTNGGTLPHEISEITTKVKRSLK 197 (526)
T ss_pred HHHhCCCCeEEEe-cCCCCcCHHHHHHHHHHHHHhCC
Confidence 4 45699999997 89889999999999988876654
No 157
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=74.19 E-value=44 Score=35.00 Aligned_cols=113 Identities=22% Similarity=0.259 Sum_probs=65.2
Q ss_pred hHHHhhcchhcCCcEEEecccCC-HHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCC
Q 010211 269 DWEDIKFGVDNQVDFYAVSFVKD-AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELP 346 (515)
Q Consensus 269 D~~dI~~al~~gvD~ValSfVrs-a~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg 346 (515)
..+.+...++.++++|..+|-.- .+.++. +++ ..+.++.++-|.+.. ...++. +|+|++-=.+=|-+.|
T Consensus 102 ~~~~~~~~~~~~~~~v~~~~G~p~~~~i~~----l~~--~gi~v~~~v~s~~~A---~~a~~~G~D~iv~qG~eAGGH~g 172 (330)
T PF03060_consen 102 FEEQLDVALEAKPDVVSFGFGLPPPEVIER----LHA--AGIKVIPQVTSVREA---RKAAKAGADAIVAQGPEAGGHRG 172 (330)
T ss_dssp HHHHHHHHHHS--SEEEEESSSC-HHHHHH----HHH--TT-EEEEEESSHHHH---HHHHHTT-SEEEEE-TTSSEE--
T ss_pred cccccccccccceEEEEeecccchHHHHHH----HHH--cCCccccccCCHHHH---HHhhhcCCCEEEEeccccCCCCC
Confidence 34556777888999999988655 333333 333 358899988876554 444555 9998876445555555
Q ss_pred C--CCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEee
Q 010211 347 I--EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 405 (515)
Q Consensus 347 ~--e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmL 405 (515)
. +....+..++.+.. .+||+.|. +.-+ -.+++.++..|+|++.+
T Consensus 173 ~~~~~~~~L~~~v~~~~---~iPViaAG---------GI~d---g~~iaaal~lGA~gV~~ 218 (330)
T PF03060_consen 173 FEVGSTFSLLPQVRDAV---DIPVIAAG---------GIAD---GRGIAAALALGADGVQM 218 (330)
T ss_dssp -SSG-HHHHHHHHHHH----SS-EEEES---------S--S---HHHHHHHHHCT-SEEEE
T ss_pred ccccceeeHHHHHhhhc---CCcEEEec---------CcCC---HHHHHHHHHcCCCEeec
Confidence 2 13555555555444 39999975 3333 34577889999999986
No 158
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=74.17 E-value=79 Score=31.89 Aligned_cols=98 Identities=17% Similarity=0.165 Sum_probs=53.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-----cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHh
Q 010211 289 VKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-----SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRS 363 (515)
Q Consensus 289 Vrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-----sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~ 363 (515)
.++++-+.++-+.+.. .+++|.+||=--.--.+..++++. +|+|.|-.+ ++.-+.+.-+.|+..++
T Consensus 117 l~dp~~l~~iv~av~~--~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~~-------~~g~~~a~~~~I~~i~~ 187 (231)
T TIGR00736 117 LKNKELLKEFLTKMKE--LNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDAM-------YPGKPYADMDLLKILSE 187 (231)
T ss_pred cCCHHHHHHHHHHHHc--CCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEeeC-------CCCCchhhHHHHHHHHH
Confidence 3455555555444543 367899999542111122244332 799988421 11112133344444444
Q ss_pred c--CCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecc
Q 010211 364 M--QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG 407 (515)
Q Consensus 364 a--GKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ 407 (515)
+ .+|+|- .+..-+. .|+..++..|+|+||+..
T Consensus 188 ~~~~ipIIg---------NGgI~s~---eda~e~l~~GAd~VmvgR 221 (231)
T TIGR00736 188 EFNDKIIIG---------NNSIDDI---ESAKEMLKAGADFVSVAR 221 (231)
T ss_pred hcCCCcEEE---------ECCcCCH---HHHHHHHHhCCCeEEEcH
Confidence 4 388775 4444443 356677778999999863
No 159
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=74.15 E-value=43 Score=34.61 Aligned_cols=118 Identities=19% Similarity=0.269 Sum_probs=78.9
Q ss_pred ceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccc---cccccCCCc
Q 010211 309 IHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNML---ESMIDHPTP 384 (515)
Q Consensus 309 i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmL---eSMi~~~~P 384 (515)
++++.+.....-++.+.+-+.. .+.||+-.-+| ++++....-+++.+.|+..|.+|-..-..+ |.++....-
T Consensus 75 vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l----~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~ 150 (282)
T TIGR01859 75 VPVALHLDHGSSYESCIKAIKAGFSSVMIDGSHL----PFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEA 150 (282)
T ss_pred CeEEEECCCCCCHHHHHHHHHcCCCEEEECCCCC----CHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCcccccccccc
Confidence 7899999877666666666655 78999986666 667888889999999999998765322221 112111000
Q ss_pred ChHHHhHHHHHHH-hCCcEEeecccccCCCC---HHHHHHHHHHHHHHHh
Q 010211 385 TRAEVSDIAIAVR-EGADAVMLSGETAHGKF---PLKAVKVMHTVALRTE 430 (515)
Q Consensus 385 trAEv~DvanaV~-~G~D~vmLs~ETa~G~y---PveaV~~m~~I~~~aE 430 (515)
+-....+...++. .|+|.+-.+--|..|.| |.--.+.+.+|++...
T Consensus 151 ~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~ 200 (282)
T TIGR01859 151 ELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTN 200 (282)
T ss_pred ccCCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhC
Confidence 0012334457775 79999998877777777 5455777777777653
No 160
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=74.14 E-value=59 Score=33.04 Aligned_cols=118 Identities=18% Similarity=0.185 Sum_probs=70.8
Q ss_pred HHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcC-eeEE-cCCcccccCCCC
Q 010211 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASD-GAMV-ARGDLGAELPIE 348 (515)
Q Consensus 271 ~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sD-gImI-grgDLg~elg~e 348 (515)
+.++.+.+.|+|++.++.. ..++..++.+.+++.|-+...+..=.| ..+.+..|++.+| .|++ ++..-+ |..
T Consensus 106 ~f~~~~~~aGvdgviipDl-p~ee~~~~~~~~~~~gl~~i~lv~P~T--~~eri~~i~~~~~gfiy~vs~~G~T---G~~ 179 (256)
T TIGR00262 106 EFYAKCKEVGVDGVLVADL-PLEESGDLVEAAKKHGVKPIFLVAPNA--DDERLKQIAEKSQGFVYLVSRAGVT---GAR 179 (256)
T ss_pred HHHHHHHHcCCCEEEECCC-ChHHHHHHHHHHHHCCCcEEEEECCCC--CHHHHHHHHHhCCCCEEEEECCCCC---CCc
Confidence 3456667889999999875 456777788888877766444443334 3678899999988 3433 332111 211
Q ss_pred -CHHHHHHHHHHHHHh-cCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 349 -DVPLLQEDIIRRCRS-MQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 349 -~v~~aqk~Ii~~c~~-aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
.+..-....++..++ .++|+.+- .+.-+.. ++..+...|+|+++.-
T Consensus 180 ~~~~~~~~~~i~~lr~~~~~pi~vg---------fGI~~~e---~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 180 NRAASALNELVKRLKAYSAKPVLVG---------FGISKPE---QVKQAIDAGADGVIVG 227 (256)
T ss_pred ccCChhHHHHHHHHHhhcCCCEEEe---------CCCCCHH---HHHHHHHcCCCEEEEC
Confidence 122223334444443 46787773 3343333 4456788899998863
No 161
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=73.88 E-value=34 Score=36.61 Aligned_cols=53 Identities=13% Similarity=0.202 Sum_probs=42.0
Q ss_pred EEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcC
Q 010211 103 IVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFE 155 (515)
Q Consensus 103 Ii~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~ 155 (515)
+..-..|..+-.+.+++++++|+..+-+..-+.+..+..+..+.+++..+.++
T Consensus 149 LylIT~~~~~ll~~l~~al~~Gv~~VQLR~K~~~~~~~~~~a~~L~~l~~~~~ 201 (347)
T PRK02615 149 LYLITSPSENLLEVVEAALKGGVTLVQYRDKTADDRQRLEEAKKLKELCHRYG 201 (347)
T ss_pred EEEEECCchhHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 44444453233568999999999999999999999888888888998887776
No 162
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=73.56 E-value=54 Score=34.81 Aligned_cols=89 Identities=19% Similarity=0.310 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 010211 293 KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (515)
Q Consensus 293 ~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivA 371 (515)
++...+.+|.++.| +..++ |+=..+.+|.+.+. +|.+=||-+|+.- -.+++.+.+.|||+++.
T Consensus 76 e~~~~L~~~~~~~G--i~~~s---tpfd~~svd~l~~~~v~~~KIaS~~~~n-----------~pLL~~~A~~gkPvilS 139 (329)
T TIGR03569 76 EDHRELKEYCESKG--IEFLS---TPFDLESADFLEDLGVPRFKIPSGEITN-----------APLLKKIARFGKPVILS 139 (329)
T ss_pred HHHHHHHHHHHHhC--CcEEE---EeCCHHHHHHHHhcCCCEEEECcccccC-----------HHHHHHHHhcCCcEEEE
Confidence 34445555554432 33444 33333444555556 7888888887743 23566677889999997
Q ss_pred eccccccccCCCcChHHHhHHHHHHHh-CCc---EEeec
Q 010211 372 TNMLESMIDHPTPTRAEVSDIAIAVRE-GAD---AVMLS 406 (515)
Q Consensus 372 TqmLeSMi~~~~PtrAEv~DvanaV~~-G~D---~vmLs 406 (515)
| +..|..|+...+.++.. |.+ .++|-
T Consensus 140 t---------Gmatl~Ei~~Av~~i~~~G~~~~~i~llh 169 (329)
T TIGR03569 140 T---------GMATLEEIEAAVGVLRDAGTPDSNITLLH 169 (329)
T ss_pred C---------CCCCHHHHHHHHHHHHHcCCCcCcEEEEE
Confidence 6 44578888888888874 553 55543
No 163
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=73.55 E-value=51 Score=35.08 Aligned_cols=154 Identities=14% Similarity=0.091 Sum_probs=90.9
Q ss_pred CCHhhHHHhh-cchhcCCcEEEecccC-CHHHHHHHHHHHHhcCCCceEEEEe-cChhhhhcHHHHHhh-cCeeE--EcC
Q 010211 265 ITDKDWEDIK-FGVDNQVDFYAVSFVK-DAKVVHELKDYLKSCNADIHVIVKI-ESADSIPNLHSIISA-SDGAM--VAR 338 (515)
Q Consensus 265 ltekD~~dI~-~al~~gvD~ValSfVr-sa~dv~~vr~~l~~~~~~i~IIaKI-Et~~aveNldeIl~~-sDgIm--Igr 338 (515)
++..++..|. .-.+.|+|.|=+.|-. +..+...++... +.+.+..+.+-. -+. +.++..++. +|.|. +.-
T Consensus 20 ~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~-~~~~~~~i~~~~r~~~---~di~~a~~~g~~~i~i~~~~ 95 (365)
T TIGR02660 20 FTAAEKLAIARALDEAGVDELEVGIPAMGEEERAVIRAIV-ALGLPARLMAWCRARD---ADIEAAARCGVDAVHISIPV 95 (365)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHH-HcCCCcEEEEEcCCCH---HHHHHHHcCCcCEEEEEEcc
Confidence 4667775554 4456799998776543 333444454443 333445555544 233 334444443 45543 333
Q ss_pred Cccccc--C--CCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHH-HHHhCCcEEeecccccCCC
Q 010211 339 GDLGAE--L--PIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAVMLSGETAHGK 413 (515)
Q Consensus 339 gDLg~e--l--g~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~Dvan-aV~~G~D~vmLs~ETa~G~ 413 (515)
.|+-.. + ..++.....++.++.++++|..|-+.. ....+-+...+.+++. +...|+|.+-|. +|.=..
T Consensus 96 Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~------ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~-DT~G~~ 168 (365)
T TIGR02660 96 SDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGG------EDASRADPDFLVELAEVAAEAGADRFRFA-DTVGIL 168 (365)
T ss_pred CHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEee------cCCCCCCHHHHHHHHHHHHHcCcCEEEEc-ccCCCC
Confidence 342211 1 224566667788999999998876532 1233333344445444 445699999885 888888
Q ss_pred CHHHHHHHHHHHHHHH
Q 010211 414 FPLKAVKVMHTVALRT 429 (515)
Q Consensus 414 yPveaV~~m~~I~~~a 429 (515)
.|.+.-+.+..+..+.
T Consensus 169 ~P~~v~~lv~~l~~~~ 184 (365)
T TIGR02660 169 DPFSTYELVRALRQAV 184 (365)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999998888887665
No 164
>PF01274 Malate_synthase: Malate synthase; InterPro: IPR001465 Malate synthase (2.3.3.9 from EC) catalyses the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. Malate synthase has a TIM beta/alpha-barrel fold [].; GO: 0004474 malate synthase activity, 0006097 glyoxylate cycle; PDB: 1Y8B_A 1P7T_A 2JQX_A 1D8C_A 3CUX_A 1N8W_A 2GQ3_A 1N8I_A 3CV2_A 3CUZ_A ....
Probab=73.46 E-value=9.5 Score=42.91 Aligned_cols=123 Identities=15% Similarity=0.154 Sum_probs=75.1
Q ss_pred cEEEecccCCHHHHHHHHHH-------HHhcCCCceEEEEecChhhhhcHHHHHhh----cCeeEEcCCc----------
Q 010211 282 DFYAVSFVKDAKVVHELKDY-------LKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGD---------- 340 (515)
Q Consensus 282 D~ValSfVrsa~dv~~vr~~-------l~~~~~~i~IIaKIEt~~aveNldeIl~~----sDgImIgrgD---------- 340 (515)
=|+-+|.+++.++++-..+. |+-....+++-+.|||..|.-|++||+.. +=|+=-||=|
T Consensus 205 pYfylPKme~~~EA~lwn~vF~~~E~~Lglp~gTIKatvLiEt~~Aafem~Eilyelr~h~~gLN~GrwDYifS~Ik~~~ 284 (526)
T PF01274_consen 205 PYFYLPKMESHEEARLWNDVFSFAEDLLGLPRGTIKATVLIETIPAAFEMEEILYELRDHSVGLNCGRWDYIFSEIKTFR 284 (526)
T ss_dssp EEEEE-S-SSHHHHHHHHHHHHHHHHHHTSSTTSEEEEEEE-SHHHHTTHHHHHHHTTTTEEEEEE-HHHHHHHHHHHTC
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEeeehhHHHhhHHHHHHHHHhheeeeecCchhhhHHHHHHhh
Confidence 37889999999998765544 43334568999999999999999999986 3344444433
Q ss_pred ------------ccccCCCCCHHHHHHHHHHHHHhcCCcE--EEEeccccc--cccCCCcChHHHhHHHHHHHhCCcEEe
Q 010211 341 ------------LGAELPIEDVPLLQEDIIRRCRSMQKPV--IVATNMLES--MIDHPTPTRAEVSDIAIAVREGADAVM 404 (515)
Q Consensus 341 ------------Lg~elg~e~v~~aqk~Ii~~c~~aGKPv--ivATqmLeS--Mi~~~~PtrAEv~DvanaV~~G~D~vm 404 (515)
++++. +=+....+..++.|++.|... |++.|+--. |..++.--..=..|=-.-+.+|+|+.+
T Consensus 285 ~~~~~vlPdR~~v~m~~--pfm~aY~~llv~tch~Rga~a~gGmaa~ip~~~d~~~~~~a~~~v~~dK~rE~~~G~dg~W 362 (526)
T PF01274_consen 285 NRPDFVLPDRKQVTMTQ--PFMRAYEDLLVRTCHRRGAHAMGGMAAFIPIGKDPWANPDAMAKVRADKEREAKAGFDGAW 362 (526)
T ss_dssp CGCCBB---GGGGGCGS--HHHHHHHHHHHHHHHHTT-HHHTTCTTTSEEEEEEHHBTTCHHHHHHHTHHHHHTT-SEEE
T ss_pred hCCCccccccccccccC--HHHHHHHHHHHHHHhhcCCccccCCccccCCCCChhhhHHHHHHHHHHHHHHHhcCCCccc
Confidence 22222 237778899999999999765 343333211 222221111113333566889999999
Q ss_pred ec
Q 010211 405 LS 406 (515)
Q Consensus 405 Ls 406 (515)
..
T Consensus 363 Va 364 (526)
T PF01274_consen 363 VA 364 (526)
T ss_dssp ES
T ss_pred cc
Confidence 84
No 165
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=73.36 E-value=40 Score=35.50 Aligned_cols=132 Identities=21% Similarity=0.271 Sum_probs=81.8
Q ss_pred HHhhcchhcCCcEEEecccCCHHHHHHHHHH--------------------------------------------HHhcC
Q 010211 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDY--------------------------------------------LKSCN 306 (515)
Q Consensus 271 ~dI~~al~~gvD~ValSfVrsa~dv~~vr~~--------------------------------------------l~~~~ 306 (515)
..|..+++.|+|+|.+ .++|+..++++ +...|
T Consensus 19 ~~it~alEaG~d~vvv----~~~dvervkeLGni~vaa~~~daDiv~vgk~gegdgt~~lp~~~~~s~di~~~~~~~~~G 94 (376)
T COG1465 19 KRITAALEAGVDVVVV----RPADVERVKELGNIKVAAPSDDADIVVVGKDGEGDGTVDLPADISGSADIEALRELMDRG 94 (376)
T ss_pred HHHHHHHhcCCCEEEE----CHHHHHHHHhhCceEEecccCCCceEEeccCCCCCCcccCcccccccccHHHHHHhhhcC
Confidence 5567788889998754 34666666553 11234
Q ss_pred CCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcCh
Q 010211 307 ADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTR 386 (515)
Q Consensus 307 ~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~Ptr 386 (515)
......+.|.+.+--+-..++..++|.+++---|..+ +|+|.+.+ .. ++-+--++|. .-+-
T Consensus 95 ~~~~~yV~I~~ke~EefA~~~~~~~d~~i~~g~DWki-IPLENlIA------~l--~~e~~kliA~----------V~sa 155 (376)
T COG1465 95 HEVAAYVEIRSKEDEEFAAERAKVADYVIVVGEDWKI-IPLENLIA------DL--QHEKVKLIAG----------VKSA 155 (376)
T ss_pred cceEEEEEEcCccchHHHHhhccccceEEEEcCcceE-eeHHHHHH------Hh--hccceEEEEE----------eccH
Confidence 4556777888877666666666677887765445433 35444321 11 1122223332 2334
Q ss_pred HHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHHHHHHHHhc
Q 010211 387 AEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTES 431 (515)
Q Consensus 387 AEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~ 431 (515)
.|..-.+..+..|+|+++|.++ .| +-++-..+++.++|+
T Consensus 156 eEA~vA~eTLE~GaDgVll~~~-----d~-~eIk~~~~~~~e~~~ 194 (376)
T COG1465 156 EEARVALETLEKGADGVLLDSD-----DP-EEIKKTAEVVEEAES 194 (376)
T ss_pred HHHHHHHHHHhccCceEEeCCC-----CH-HHHHHHHHHHHHhcc
Confidence 4555567889999999999744 45 677888888888884
No 166
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=73.29 E-value=1.1e+02 Score=32.02 Aligned_cols=51 Identities=16% Similarity=0.018 Sum_probs=40.8
Q ss_pred EEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcC
Q 010211 103 IVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFE 155 (515)
Q Consensus 103 Ii~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~ 155 (515)
+..-+-- + +.+.+++.+++|.+..-|..||.+.++..+.-+.+++....+|
T Consensus 80 V~lHLDH-~-~~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~g 130 (293)
T PRK07315 80 VAIHLDH-G-HYEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKG 130 (293)
T ss_pred EEEECCC-C-CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 4444422 3 6889999999999999999999999888777777777777766
No 167
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=73.01 E-value=19 Score=37.44 Aligned_cols=118 Identities=17% Similarity=0.293 Sum_probs=75.8
Q ss_pred CCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcE-EEEeccc---cccccC
Q 010211 307 ADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPV-IVATNML---ESMIDH 381 (515)
Q Consensus 307 ~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPv-ivATqmL---eSMi~~ 381 (515)
.+++|...+....-++.+.+-++. .+.||+. -| .+++++=...-+++++.|+++|.+| +=-.++- +.....
T Consensus 73 ~~vPV~lHLDH~~~~e~i~~Ai~~GftSVM~D---gS-~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~ 148 (283)
T PRK07998 73 MDVPVSLHLDHGKTFEDVKQAVRAGFTSVMID---GA-ALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSE 148 (283)
T ss_pred CCCCEEEECcCCCCHHHHHHHHHcCCCEEEEe---CC-CCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCcccccccc
Confidence 467888888887666555555555 7999994 33 4688777788899999999999998 2111110 000000
Q ss_pred CCcChHHHhHHHHHHH-hCCcEEeecccccCCCC--HHHHHHHHHHHHHHH
Q 010211 382 PTPTRAEVSDIAIAVR-EGADAVMLSGETAHGKF--PLKAVKVMHTVALRT 429 (515)
Q Consensus 382 ~~PtrAEv~DvanaV~-~G~D~vmLs~ETa~G~y--PveaV~~m~~I~~~a 429 (515)
.-...+..+...++. -|+|++-.+--|+.|.| |---...+.+|....
T Consensus 149 -~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~ 198 (283)
T PRK07998 149 -ADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVS 198 (283)
T ss_pred -ccccCCHHHHHHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhhC
Confidence 000112334456664 69999999999999999 443345666665543
No 168
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=72.86 E-value=36 Score=35.18 Aligned_cols=97 Identities=19% Similarity=0.227 Sum_probs=56.5
Q ss_pred HHhhcchhcCCcEEEec------ccCCHHHHHH-HHHHHHhcCCCceEEEEec--ChhhhhcHHHHHhh-cCeeEEcCCc
Q 010211 271 EDIKFGVDNQVDFYAVS------FVKDAKVVHE-LKDYLKSCNADIHVIVKIE--SADSIPNLHSIISA-SDGAMVARGD 340 (515)
Q Consensus 271 ~dI~~al~~gvD~ValS------fVrsa~dv~~-vr~~l~~~~~~i~IIaKIE--t~~aveNldeIl~~-sDgImIgrgD 340 (515)
+.++|.++.|+|+|.+. +.-+.++-.+ ++...+..+.++.||+-+- |.++++......+. +|++|+.+-.
T Consensus 32 ~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~t~~~i~~~~~a~~~Gadav~~~pP~ 111 (303)
T PRK03620 32 EHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGGGTAQAIEYAQAAERAGADGILLLPPY 111 (303)
T ss_pred HHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHHHHHhCCCEEEECCCC
Confidence 45578889999998762 1223333333 3445555677888888873 23444444444333 8999998765
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 010211 341 LGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (515)
Q Consensus 341 Lg~elg~e~v~~aqk~Ii~~c~~aGKPvivA 371 (515)
... ..-+.+....+. .|.+.+.|+++.
T Consensus 112 y~~-~~~~~i~~~f~~---va~~~~lpi~lY 138 (303)
T PRK03620 112 LTE-APQEGLAAHVEA---VCKSTDLGVIVY 138 (303)
T ss_pred CCC-CCHHHHHHHHHH---HHHhCCCCEEEE
Confidence 431 111334434444 455678999984
No 169
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=72.73 E-value=18 Score=36.88 Aligned_cols=97 Identities=16% Similarity=0.172 Sum_probs=57.2
Q ss_pred HHhhcchhcCCcEEEec------ccCCHHHHHH-HHHHHHhcCCCceEEEEec---ChhhhhcHHHHHhh-cCeeEEcCC
Q 010211 271 EDIKFGVDNQVDFYAVS------FVKDAKVVHE-LKDYLKSCNADIHVIVKIE---SADSIPNLHSIISA-SDGAMVARG 339 (515)
Q Consensus 271 ~dI~~al~~gvD~ValS------fVrsa~dv~~-vr~~l~~~~~~i~IIaKIE---t~~aveNldeIl~~-sDgImIgrg 339 (515)
+.+++.++.|+|+|.+. +.=+.++-.+ ++...+..+.++.|++.+- +.++++......+. +|++|+.+-
T Consensus 23 ~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP 102 (285)
T TIGR00674 23 KLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTP 102 (285)
T ss_pred HHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 45578889999998863 2223333333 3334455566788999884 34455444444444 899999864
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 010211 340 DLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (515)
Q Consensus 340 DLg~elg~e~v~~aqk~Ii~~c~~aGKPvivA 371 (515)
... ..+-+++....+.| |.+.+.|+++.
T Consensus 103 ~y~-~~~~~~i~~~~~~i---~~~~~~pi~lY 130 (285)
T TIGR00674 103 YYN-KPTQEGLYQHFKAI---AEEVDLPIILY 130 (285)
T ss_pred cCC-CCCHHHHHHHHHHH---HhcCCCCEEEE
Confidence 432 11223444444555 45568999884
No 170
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=72.71 E-value=60 Score=34.73 Aligned_cols=164 Identities=15% Similarity=0.129 Sum_probs=93.3
Q ss_pred CceeeeCCCccCCCCCCHhhHHHh-hcchhcCCcEEEe-cccCCHH------HHHHHHHHHHhc-CCCceEEEEecChhh
Q 010211 250 RRHLNVRGKSANLPSITDKDWEDI-KFGVDNQVDFYAV-SFVKDAK------VVHELKDYLKSC-NADIHVIVKIESADS 320 (515)
Q Consensus 250 ~KgVnlpg~~~~lp~ltekD~~dI-~~al~~gvD~Val-SfVrsa~------dv~~vr~~l~~~-~~~i~IIaKIEt~~a 320 (515)
|-|..-|++. ++.+++..| +.-.+.|+|.|=+ ||+ +++ |-.++.+.+... +.++..+ +=+.++
T Consensus 55 RDG~Q~~g~~-----~s~e~Ki~ia~~L~~~GV~~IEvGs~v-spk~vPqmad~~ev~~~i~~~~~~~~~~l--~~n~~d 126 (347)
T PLN02746 55 RDGLQNEKNI-----VPTSVKVELIQRLVSSGLPVVEATSFV-SPKWVPQLADAKDVMAAVRNLEGARFPVL--TPNLKG 126 (347)
T ss_pred CccCcCCCCC-----CCHHHHHHHHHHHHHcCCCEEEECCCc-CcccccccccHHHHHHHHHhccCCceeEE--cCCHHH
Confidence 4455556654 355666555 4445689998855 455 432 333333333332 2222223 224444
Q ss_pred hhcHHHHHhh-cCeeEEc--CCcccc----cCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccc-cCCCcChHH---H
Q 010211 321 IPNLHSIISA-SDGAMVA--RGDLGA----ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMI-DHPTPTRAE---V 389 (515)
Q Consensus 321 veNldeIl~~-sDgImIg--rgDLg~----elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi-~~~~PtrAE---v 389 (515)
++. .++. .|.|.+. -.|+=. ....++.....+++++.++++|..|...= ||. .+|..+|++ +
T Consensus 127 ie~---A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~i----s~~fg~p~~~r~~~~~l 199 (347)
T PLN02746 127 FEA---AIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYV----SCVVGCPIEGPVPPSKV 199 (347)
T ss_pred HHH---HHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEE----EeeecCCccCCCCHHHH
Confidence 433 3333 5654433 233211 12336777788899999999999884210 121 234444443 3
Q ss_pred hH-HHHHHHhCCcEEeecccccCCCCHHHHHHHHHHHHHHH
Q 010211 390 SD-IAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRT 429 (515)
Q Consensus 390 ~D-vanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~a 429 (515)
.+ +-.+...|+|.+.|. +|.=-..|.+..+.+..+..+.
T Consensus 200 ~~~~~~~~~~Gad~I~l~-DT~G~a~P~~v~~lv~~l~~~~ 239 (347)
T PLN02746 200 AYVAKELYDMGCYEISLG-DTIGVGTPGTVVPMLEAVMAVV 239 (347)
T ss_pred HHHHHHHHHcCCCEEEec-CCcCCcCHHHHHHHHHHHHHhC
Confidence 33 345777899999985 8887778999999988886553
No 171
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=72.17 E-value=97 Score=31.79 Aligned_cols=73 Identities=32% Similarity=0.333 Sum_probs=50.9
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHH
Q 010211 343 AELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVM 422 (515)
Q Consensus 343 ~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m 422 (515)
...|+.. ++..+.|.+. .+.||++ ..+.-+. +|++.++..|+|++++.+--+.++-|..-.+.+
T Consensus 157 sg~Gi~~-~~~I~~I~e~---~~vpVI~---------egGI~tp---eda~~AmelGAdgVlV~SAIt~a~dP~~ma~af 220 (248)
T cd04728 157 SGQGLLN-PYNLRIIIER---ADVPVIV---------DAGIGTP---SDAAQAMELGADAVLLNTAIAKAKDPVAMARAF 220 (248)
T ss_pred CCCCCCC-HHHHHHHHHh---CCCcEEE---------eCCCCCH---HHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHH
Confidence 3345544 5555655443 5789998 3444443 367799999999999998888888898888877
Q ss_pred HHHHHHHhc
Q 010211 423 HTVALRTES 431 (515)
Q Consensus 423 ~~I~~~aE~ 431 (515)
..-+..-..
T Consensus 221 ~~Av~aGr~ 229 (248)
T cd04728 221 KLAVEAGRL 229 (248)
T ss_pred HHHHHHHHH
Confidence 766655443
No 172
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=71.42 E-value=21 Score=36.38 Aligned_cols=97 Identities=19% Similarity=0.185 Sum_probs=57.2
Q ss_pred HHhhcchhcCCcEEEecc------cCCHHHHHH-HHHHHHhcCCCceEEEEec---ChhhhhcHHHHHhh-cCeeEEcCC
Q 010211 271 EDIKFGVDNQVDFYAVSF------VKDAKVVHE-LKDYLKSCNADIHVIVKIE---SADSIPNLHSIISA-SDGAMVARG 339 (515)
Q Consensus 271 ~dI~~al~~gvD~ValSf------Vrsa~dv~~-vr~~l~~~~~~i~IIaKIE---t~~aveNldeIl~~-sDgImIgrg 339 (515)
+.+++.++.|++++.+.= .=+.++-.+ ++...+..+.++.|++.+= |.++++......+. +|++|+.+-
T Consensus 26 ~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP 105 (292)
T PRK03170 26 KLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTP 105 (292)
T ss_pred HHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCC
Confidence 555788889999987531 112222222 3334444556788888874 45555555555444 899999766
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 010211 340 DLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (515)
Q Consensus 340 DLg~elg~e~v~~aqk~Ii~~c~~aGKPvivA 371 (515)
.... .+-+++...-+.| |.+.+.|+++.
T Consensus 106 ~~~~-~~~~~i~~~~~~i---a~~~~~pv~lY 133 (292)
T PRK03170 106 YYNK-PTQEGLYQHFKAI---AEATDLPIILY 133 (292)
T ss_pred cCCC-CCHHHHHHHHHHH---HhcCCCCEEEE
Confidence 5421 1223444444445 44568999985
No 173
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=71.17 E-value=14 Score=42.77 Aligned_cols=153 Identities=14% Similarity=0.235 Sum_probs=97.1
Q ss_pred hHHHhhcchhcCCcEEEecccCCHHHHH---HHHHHHHhcCCCceEEEEec--ChhhhhcHHHHHhhcCeeEEcCCcccc
Q 010211 269 DWEDIKFGVDNQVDFYAVSFVKDAKVVH---ELKDYLKSCNADIHVIVKIE--SADSIPNLHSIISASDGAMVARGDLGA 343 (515)
Q Consensus 269 D~~dI~~al~~gvD~ValSfVrsa~dv~---~vr~~l~~~~~~i~IIaKIE--t~~aveNldeIl~~sDgImIgrgDLg~ 343 (515)
-.+.+....+.|+|+|-+. |.+.++.. .+++-|.+.+-+++++|-|- -.-|++ -++.+|.|=|-||.++-
T Consensus 112 tv~Qi~~l~~aGceiVRvt-v~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~----a~~~vdkiRINPGN~~~ 186 (733)
T PLN02925 112 TVDQVMRIADKGADIVRIT-VQGKKEADACFEIKNTLVQKGYNIPLVADIHFAPSVALR----VAECFDKIRVNPGNFAD 186 (733)
T ss_pred HHHHHHHHHHcCCCEEEEc-CCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCHHHHHH----HHHhcCCeEECCcccCC
Confidence 3455556667899998765 45555554 45666666788899999873 333442 23338999999999886
Q ss_pred cCC---------------CCCHHHHHHHHHHHHHhcCCcEEEEec-------cccccccCCCcC-hHH--HhHHHHHHHh
Q 010211 344 ELP---------------IEDVPLLQEDIIRRCRSMQKPVIVATN-------MLESMIDHPTPT-RAE--VSDIAIAVRE 398 (515)
Q Consensus 344 elg---------------~e~v~~aqk~Ii~~c~~aGKPvivATq-------mLeSMi~~~~Pt-rAE--v~DvanaV~~ 398 (515)
.-. ++++.+....++++|+++|+|+=+-++ +|+. +..+|. ..| ...+--+-..
T Consensus 187 ~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~--yGdtp~gmVeSAle~~~i~e~~ 264 (733)
T PLN02925 187 RRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSY--YGDSPRGMVESAFEFARICRKL 264 (733)
T ss_pred ccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHH--hCCChHHHHHHHHHHHHHHHHC
Confidence 521 134555566899999999999866552 1111 011110 001 2223344567
Q ss_pred CCcEEeecccccCCCCHHHHHHHHHHHHHHHhc
Q 010211 399 GADAVMLSGETAHGKFPLKAVKVMHTVALRTES 431 (515)
Q Consensus 399 G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~ 431 (515)
|++=+.+| .+-..|...|...+.++.+.++
T Consensus 265 ~f~diviS---~KsSn~~~~V~AyR~La~~L~~ 294 (733)
T PLN02925 265 DYHNFVFS---MKASNPVVMVQAYRLLVAEMYV 294 (733)
T ss_pred CCCcEEEE---EEcCChHHHHHHHHHHHHHHHh
Confidence 88888887 4566777888888877777554
No 174
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=70.97 E-value=15 Score=38.28 Aligned_cols=66 Identities=6% Similarity=0.181 Sum_probs=48.5
Q ss_pred hhHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhh--hhcHHHHHhh-cCeeEEcC
Q 010211 268 KDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADS--IPNLHSIISA-SDGAMVAR 338 (515)
Q Consensus 268 kD~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~a--veNldeIl~~-sDgImIgr 338 (515)
...+++..+++.|+|+|.+-. -+.++++++...+++.+.++.+.| --| .+|+.+.++. +|+|-++.
T Consensus 204 ~tleea~eA~~~GaD~I~LDn-~~~e~l~~av~~~~~~~~~i~leA----sGGIt~~ni~~ya~tGvD~Isvgs 272 (288)
T PRK07428 204 ETLEQVQEALEYGADIIMLDN-MPVDLMQQAVQLIRQQNPRVKIEA----SGNITLETIRAVAETGVDYISSSA 272 (288)
T ss_pred CCHHHHHHHHHcCCCEEEECC-CCHHHHHHHHHHHHhcCCCeEEEE----ECCCCHHHHHHHHHcCCCEEEEch
Confidence 456677778899999999985 477888887777765555654443 323 5688888877 99999874
No 175
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=70.94 E-value=67 Score=35.11 Aligned_cols=165 Identities=18% Similarity=0.206 Sum_probs=103.0
Q ss_pred eeeeCCCccCCCCCCHhhHHHhhcch-hcCCcEEEecccCCHHHHHHHHHHHH-hcCCCceEEEEecCh-hhhh-cHHHH
Q 010211 252 HLNVRGKSANLPSITDKDWEDIKFGV-DNQVDFYAVSFVKDAKVVHELKDYLK-SCNADIHVIVKIESA-DSIP-NLHSI 327 (515)
Q Consensus 252 gVnlpg~~~~lp~ltekD~~dI~~al-~~gvD~ValSfVrsa~dv~~vr~~l~-~~~~~i~IIaKIEt~-~ave-NldeI 327 (515)
|-.-|+.. +|.+|+..|...+ +.|+|+|=+.|-.+.+...+..+.+. ..+. .+-+++-.. ..++ .++.+
T Consensus 13 G~Q~~g~~-----~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~ea~ 85 (409)
T COG0119 13 GEQAPGVS-----FSVEEKIRIAKALDDLGVDYIEAGFPVASPGDFEFVRAIAEKAGL--FICALIAALARAIKRDIEAL 85 (409)
T ss_pred CCcCCCCc-----CCHHHHHHHHHHHHHcCCCEEEEeCCcCChhhHHHHHHHHHhcCc--ccchhhhhhHHhHHhhHHHH
Confidence 44445555 4667887776555 57999988777654444434333343 2221 222333221 1223 45666
Q ss_pred Hhh-cCe--eEEcCCcccccCCC----CCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHh-C
Q 010211 328 ISA-SDG--AMVARGDLGAELPI----EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVRE-G 399 (515)
Q Consensus 328 l~~-sDg--ImIgrgDLg~elg~----e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~-G 399 (515)
+.. .|. +|++-.|+-+...+ +++.+..+..++.++.+|..+... +|.+. +-+..-+.+++.++.. |
T Consensus 86 ~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~---~Ed~~---rt~~~~l~~~~~~~~~~g 159 (409)
T COG0119 86 LEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFS---AEDAT---RTDPEFLAEVVKAAIEAG 159 (409)
T ss_pred HhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE---eeccc---cCCHHHHHHHHHHHHHcC
Confidence 665 565 88888888776654 678888899999999999887752 12221 1122225555555554 4
Q ss_pred CcEEeecccccCCCCHHHHHHHHHHHHHHHh
Q 010211 400 ADAVMLSGETAHGKFPLKAVKVMHTVALRTE 430 (515)
Q Consensus 400 ~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE 430 (515)
++.+-| .+|-=+-.|-+.-..+..+.+..-
T Consensus 160 a~~i~l-~DTvG~~~P~~~~~~i~~l~~~v~ 189 (409)
T COG0119 160 ADRINL-PDTVGVATPNEVADIIEALKANVP 189 (409)
T ss_pred CcEEEE-CCCcCccCHHHHHHHHHHHHHhCC
Confidence 999988 488888889998888888877764
No 176
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=70.71 E-value=22 Score=36.07 Aligned_cols=97 Identities=21% Similarity=0.191 Sum_probs=58.2
Q ss_pred HHhhcchhcCCcEEEecc------cCCHHHHHHHHH-HHHhcCCCceEEEEecC---hhhhhcHHHHHhh-cCeeEEcCC
Q 010211 271 EDIKFGVDNQVDFYAVSF------VKDAKVVHELKD-YLKSCNADIHVIVKIES---ADSIPNLHSIISA-SDGAMVARG 339 (515)
Q Consensus 271 ~dI~~al~~gvD~ValSf------Vrsa~dv~~vr~-~l~~~~~~i~IIaKIEt---~~aveNldeIl~~-sDgImIgrg 339 (515)
+.+++.++.|++++.+.= --+.++-.++-+ ..+..+.++.|++.+-. .++++......+. +|++|+.+-
T Consensus 25 ~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P 104 (284)
T cd00950 25 RLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTP 104 (284)
T ss_pred HHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEccc
Confidence 556788899999987641 122233333322 33444557889898853 4555555555444 899999965
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 010211 340 DLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (515)
Q Consensus 340 DLg~elg~e~v~~aqk~Ii~~c~~aGKPvivA 371 (515)
...- .+-+++....++|.+ +.+.|+++.
T Consensus 105 ~~~~-~~~~~l~~~~~~ia~---~~~~pi~lY 132 (284)
T cd00950 105 YYNK-PSQEGLYAHFKAIAE---ATDLPVILY 132 (284)
T ss_pred ccCC-CCHHHHHHHHHHHHh---cCCCCEEEE
Confidence 4321 122445555555555 468999985
No 177
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=70.50 E-value=1.3e+02 Score=30.51 Aligned_cols=155 Identities=14% Similarity=0.089 Sum_probs=92.9
Q ss_pred CCHhhHHHh-hcchhcCCcEEEeccc-CCHHHHHHHHHHHHhcCCCceEEEEe-cChhhhhcHHHHHhh-----cCeeEE
Q 010211 265 ITDKDWEDI-KFGVDNQVDFYAVSFV-KDAKVVHELKDYLKSCNADIHVIVKI-ESADSIPNLHSIISA-----SDGAMV 336 (515)
Q Consensus 265 ltekD~~dI-~~al~~gvD~ValSfV-rsa~dv~~vr~~l~~~~~~i~IIaKI-Et~~aveNldeIl~~-----sDgImI 336 (515)
++..++..+ +.-.+.|++.|=+.|- .+..|...++.+. +...+..+.+.+ -+.+++ +..++. .|.|-+
T Consensus 17 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~l~-~~~~~~~~~~l~r~~~~~v---~~a~~~~~~~~~~~i~i 92 (268)
T cd07940 17 LTPEEKLEIARQLDELGVDVIEAGFPAASPGDFEAVKRIA-REVLNAEICGLARAVKKDI---DAAAEALKPAKVDRIHT 92 (268)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHH-HhCCCCEEEEEccCCHhhH---HHHHHhCCCCCCCEEEE
Confidence 456676555 4445689999876544 4777876555543 333456666655 233343 333332 354444
Q ss_pred --cCCccc----ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHH-HHHhCCcEEeecccc
Q 010211 337 --ARGDLG----AELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAVMLSGET 409 (515)
Q Consensus 337 --grgDLg----~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~Dvan-aV~~G~D~vmLs~ET 409 (515)
+-.|.- ..++.++.....+.+++.+++.|..+.+.. ...+.-+...+.+.+. +...|+|.+.|. +|
T Consensus 93 ~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~------~~~~~~~~~~~~~~~~~~~~~G~~~i~l~-DT 165 (268)
T cd07940 93 FIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSA------EDATRTDLDFLIEVVEAAIEAGATTINIP-DT 165 (268)
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEee------ecCCCCCHHHHHHHHHHHHHcCCCEEEEC-CC
Confidence 222221 112224455667788999999998776521 1233344555555544 455699999985 88
Q ss_pred cCCCCHHHHHHHHHHHHHHHh
Q 010211 410 AHGKFPLKAVKVMHTVALRTE 430 (515)
Q Consensus 410 a~G~yPveaV~~m~~I~~~aE 430 (515)
.=..+|.+.-+.+..+-++..
T Consensus 166 ~G~~~P~~v~~lv~~l~~~~~ 186 (268)
T cd07940 166 VGYLTPEEFGELIKKLKENVP 186 (268)
T ss_pred CCCCCHHHHHHHHHHHHHhCC
Confidence 877899999888888876553
No 178
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=70.31 E-value=55 Score=34.23 Aligned_cols=130 Identities=15% Similarity=0.146 Sum_probs=63.9
Q ss_pred CCCHhhHHHh--------hcchhcCCcEEEecc-------------cCCHHH-------------HHHHHHHHHhcCCCc
Q 010211 264 SITDKDWEDI--------KFGVDNQVDFYAVSF-------------VKDAKV-------------VHELKDYLKSCNADI 309 (515)
Q Consensus 264 ~ltekD~~dI--------~~al~~gvD~ValSf-------------Vrsa~d-------------v~~vr~~l~~~~~~i 309 (515)
.+|+.|++.+ +.+.+.|+|+|=+.. .+...| +.-++..-+..+++.
T Consensus 143 ~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~ 222 (336)
T cd02932 143 ELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDK 222 (336)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCc
Confidence 5788888666 344678999986532 222222 111222222346778
Q ss_pred eEEEEecCh----hh--hhcHHHHHh----h-cCeeEEcCCcccccC--CCCCHHHHHHHHHHHHHhcCCcEEEEecccc
Q 010211 310 HVIVKIESA----DS--IPNLHSIIS----A-SDGAMVARGDLGAEL--PIEDVPLLQEDIIRRCRSMQKPVIVATNMLE 376 (515)
Q Consensus 310 ~IIaKIEt~----~a--veNldeIl~----~-sDgImIgrgDLg~el--g~e~v~~aqk~Ii~~c~~aGKPvivATqmLe 376 (515)
.|..||--. .| .+..-++++ . .|.|=|..|...... +..... .....-+..+...+||+...
T Consensus 223 ~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~-~~~~~~~ir~~~~iPVi~~G---- 297 (336)
T cd02932 223 PLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGY-QVPFAERIRQEAGIPVIAVG---- 297 (336)
T ss_pred eEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccc-cHHHHHHHHhhCCCCEEEeC----
Confidence 888886421 11 222222222 2 577776655433221 111100 01111122344579988742
Q ss_pred ccccCCCcChHHHhHHHHHHHhC-CcEEeec
Q 010211 377 SMIDHPTPTRAEVSDIAIAVREG-ADAVMLS 406 (515)
Q Consensus 377 SMi~~~~PtrAEv~DvanaV~~G-~D~vmLs 406 (515)
..-+.+ +...++..| +|.|++.
T Consensus 298 -----~i~t~~---~a~~~l~~g~aD~V~~g 320 (336)
T cd02932 298 -----LITDPE---QAEAILESGRADLVALG 320 (336)
T ss_pred -----CCCCHH---HHHHHHHcCCCCeehhh
Confidence 222333 233667777 9999975
No 179
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=70.28 E-value=28 Score=35.36 Aligned_cols=144 Identities=13% Similarity=0.120 Sum_probs=82.4
Q ss_pred CCCCHhhHH-HhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhh----------hcHHHHHhh-
Q 010211 263 PSITDKDWE-DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSI----------PNLHSIISA- 330 (515)
Q Consensus 263 p~ltekD~~-dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~av----------eNldeIl~~- 330 (515)
|.-+..|.+ .++.+++.|+|.|.++. .-+...+..+ +.++.++.+|++..++ ..+++.++.
T Consensus 34 p~~~~~d~~~~~~~a~~~~~~av~v~~----~~~~~~~~~~---~~~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~~~G 106 (267)
T PRK07226 34 PIDGLVDIRDTVNKVAEGGADAVLMHK----GLARHGHRGY---GRDVGLIVHLSASTSLSPDPNDKVLVGTVEEAIKLG 106 (267)
T ss_pred CCcCcCCHHHHHHHHHhcCCCEEEeCH----hHHhhhcccc---CCCCcEEEEEcCCCCCCCCCCcceeeecHHHHHHcC
Confidence 445666764 55788899999998863 2233322223 3457789999854333 225555555
Q ss_pred cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEecc----ccccccCCCcChHHHhH-HHHHHHhCCcEEee
Q 010211 331 SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNM----LESMIDHPTPTRAEVSD-IAIAVREGADAVML 405 (515)
Q Consensus 331 sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqm----LeSMi~~~~PtrAEv~D-vanaV~~G~D~vmL 405 (515)
+|++-+--..... ...++....+++.+.|++.|.|+++-..- +|. . -+..++.. ..-+...|+|.+=.
T Consensus 107 ad~v~~~~~~g~~--~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~----~-~~~~~i~~a~~~a~e~GAD~vKt 179 (267)
T PRK07226 107 ADAVSVHVNVGSE--TEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKN----E-YDPEVVAHAARVAAELGADIVKT 179 (267)
T ss_pred CCEEEEEEecCCh--hHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCC----C-ccHHHHHHHHHHHHHHCCCEEee
Confidence 6665543111111 13457778889999999999999873100 111 1 12223333 23455789999955
Q ss_pred cccccCCCCHHHHHHHHHHHHHH
Q 010211 406 SGETAHGKFPLKAVKVMHTVALR 428 (515)
Q Consensus 406 s~ETa~G~yPveaV~~m~~I~~~ 428 (515)
+ |+- -++.|++++..
T Consensus 180 ~-------~~~-~~~~l~~~~~~ 194 (267)
T PRK07226 180 N-------YTG-DPESFREVVEG 194 (267)
T ss_pred C-------CCC-CHHHHHHHHHh
Confidence 4 321 24666666653
No 180
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=70.11 E-value=25 Score=34.94 Aligned_cols=108 Identities=14% Similarity=0.207 Sum_probs=60.4
Q ss_pred EEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCC--------cccccCCC--CCHHH
Q 010211 283 FYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARG--------DLGAELPI--EDVPL 352 (515)
Q Consensus 283 ~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrg--------DLg~elg~--e~v~~ 352 (515)
.+++=...++++...+.+.+.+.|-++.=|. .-|+++++.+.++.+....++||-| +.+.+.|. --.|.
T Consensus 17 ~iaV~r~~~~~~a~~i~~al~~~Gi~~iEit-l~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~ 95 (212)
T PRK05718 17 VVPVIVINKLEDAVPLAKALVAGGLPVLEVT-LRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPG 95 (212)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHcCCCEEEEe-cCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCC
Confidence 3333344556665555555554444332222 4566666666666655444555543 11122221 01223
Q ss_pred HHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEee
Q 010211 353 LQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 405 (515)
Q Consensus 353 aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmL 405 (515)
.-..+++.|+++|.|.+= -..+|| | +..+...|+|.+=|
T Consensus 96 ~~~~vi~~a~~~~i~~iP---------G~~Tpt--E---i~~a~~~Ga~~vKl 134 (212)
T PRK05718 96 LTPPLLKAAQEGPIPLIP---------GVSTPS--E---LMLGMELGLRTFKF 134 (212)
T ss_pred CCHHHHHHHHHcCCCEeC---------CCCCHH--H---HHHHHHCCCCEEEE
Confidence 345889999999999873 112343 4 56889999999988
No 181
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=70.08 E-value=1e+02 Score=29.84 Aligned_cols=112 Identities=18% Similarity=0.205 Sum_probs=71.7
Q ss_pred CHhhHHHh-hcchhcCCcEEEec-----ccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhc---HHHHHhh-cCeeE
Q 010211 266 TDKDWEDI-KFGVDNQVDFYAVS-----FVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPN---LHSIISA-SDGAM 335 (515)
Q Consensus 266 tekD~~dI-~~al~~gvD~ValS-----fVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveN---ldeIl~~-sDgIm 335 (515)
+..|..++ +...+.|++++.+. |-.+.+++..+++.. +++|+.| ..+.+ +++..+. +|++.
T Consensus 29 ~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v-----~iPi~~~----~~i~~~~~v~~~~~~Gad~v~ 99 (217)
T cd00331 29 EDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAV-----SLPVLRK----DFIIDPYQIYEARAAGADAVL 99 (217)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhc-----CCCEEEC----CeecCHHHHHHHHHcCCCEEE
Confidence 33455444 44567899988652 335777887777764 5667655 23333 4444444 89999
Q ss_pred EcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeeccc
Q 010211 336 VARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGE 408 (515)
Q Consensus 336 IgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~E 408 (515)
++--||. +...+++++.+...|..+++.+ .+-.| +..+...|+|.+.+++.
T Consensus 100 l~~~~~~--------~~~~~~~~~~~~~~g~~~~v~v-----------~~~~e---~~~~~~~g~~~i~~t~~ 150 (217)
T cd00331 100 LIVAALD--------DEQLKELYELARELGMEVLVEV-----------HDEEE---LERALALGAKIIGINNR 150 (217)
T ss_pred EeeccCC--------HHHHHHHHHHHHHcCCeEEEEE-----------CCHHH---HHHHHHcCCCEEEEeCC
Confidence 8744442 1466788888898999887643 12233 45677789999988743
No 182
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=70.02 E-value=25 Score=35.33 Aligned_cols=111 Identities=18% Similarity=0.148 Sum_probs=66.7
Q ss_pred HHhhcchhcCCcEEEe---------------cccCCHHHHHHHHHHHHhcCC--CceEEEEecChh--------hhhcHH
Q 010211 271 EDIKFGVDNQVDFYAV---------------SFVKDAKVVHELKDYLKSCNA--DIHVIVKIESAD--------SIPNLH 325 (515)
Q Consensus 271 ~dI~~al~~gvD~Val---------------SfVrsa~dv~~vr~~l~~~~~--~i~IIaKIEt~~--------aveNld 325 (515)
+.++...+.|+++|.+ ..+...+.+..++......+. ++.|+|..++.. +++...
T Consensus 88 ~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ 167 (243)
T cd00377 88 RTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAK 167 (243)
T ss_pred HHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHH
Confidence 4455666789999888 344445555666666665555 899999977653 333333
Q ss_pred HHHhh-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCC-cChHHHhHHHHHHHhCCcEE
Q 010211 326 SIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPT-PTRAEVSDIAIAVREGADAV 403 (515)
Q Consensus 326 eIl~~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~-PtrAEv~DvanaV~~G~D~v 403 (515)
.-.+. +|++|+-.-. -.+++-+.+++...|+.+- +..++. ++..| .-..|+..+
T Consensus 168 ay~~AGAD~v~v~~~~------------~~~~~~~~~~~~~~Pl~~~------~~~~~~~~~~~~------l~~lG~~~v 223 (243)
T cd00377 168 AYAEAGADGIFVEGLK------------DPEEIRAFAEAPDVPLNVN------MTPGGNLLTVAE------LAELGVRRV 223 (243)
T ss_pred HHHHcCCCEEEeCCCC------------CHHHHHHHHhcCCCCEEEE------ecCCCCCCCHHH------HHHCCCeEE
Confidence 33334 8999994221 2255555667788998873 112221 34443 344588777
Q ss_pred ee
Q 010211 404 ML 405 (515)
Q Consensus 404 mL 405 (515)
.+
T Consensus 224 ~~ 225 (243)
T cd00377 224 SY 225 (243)
T ss_pred EE
Confidence 65
No 183
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=69.35 E-value=89 Score=32.01 Aligned_cols=88 Identities=13% Similarity=0.188 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEec
Q 010211 294 VVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATN 373 (515)
Q Consensus 294 dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATq 373 (515)
.++.++++-++. .+.+++-+-+.+.++ .+.+.+|.+-||-+++.- ..+++++.+.||||++.
T Consensus 67 gl~~L~~~~~~~--Gl~~~Tev~d~~~v~---~~~e~vdilqIgs~~~~n-----------~~LL~~va~tgkPVilk-- 128 (250)
T PRK13397 67 GIRYLHEVCQEF--GLLSVSEIMSERQLE---EAYDYLDVIQVGARNMQN-----------FEFLKTLSHIDKPILFK-- 128 (250)
T ss_pred HHHHHHHHHHHc--CCCEEEeeCCHHHHH---HHHhcCCEEEECcccccC-----------HHHHHHHHccCCeEEEe--
Confidence 344555555443 477888777766664 444569999999777643 55777788889999994
Q ss_pred cccccccCC-CcChHHHhHHHHHHH-hCCcEEeec
Q 010211 374 MLESMIDHP-TPTRAEVSDIAIAVR-EGADAVMLS 406 (515)
Q Consensus 374 mLeSMi~~~-~PtrAEv~DvanaV~-~G~D~vmLs 406 (515)
++ .+|-.|+...+..+. .|..-++|.
T Consensus 129 -------~G~~~t~~e~~~A~e~i~~~Gn~~i~L~ 156 (250)
T PRK13397 129 -------RGLMATIEEYLGALSYLQDTGKSNIILC 156 (250)
T ss_pred -------CCCCCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 45 788889888888877 466556665
No 184
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=69.28 E-value=1e+02 Score=29.10 Aligned_cols=133 Identities=17% Similarity=0.180 Sum_probs=75.0
Q ss_pred HHhhcchhcCCcEEEe-----cccCCH----HHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCc
Q 010211 271 EDIKFGVDNQVDFYAV-----SFVKDA----KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGD 340 (515)
Q Consensus 271 ~dI~~al~~gvD~Val-----SfVrsa----~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgD 340 (515)
+.++.+.+.|+|+|.+ +|+.+. +.+.++++.. +..+.+-.++.++. +-++.+.+. +||+.|-
T Consensus 16 ~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~---~~~~~v~l~~~d~~--~~~~~~~~~g~dgv~vh--- 87 (211)
T cd00429 16 EELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHT---DLPLDVHLMVENPE--RYIEAFAKAGADIITFH--- 87 (211)
T ss_pred HHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhC---CCcEEEEeeeCCHH--HHHHHHHHcCCCEEEEC---
Confidence 4567778899999998 665433 3344444332 22333446666553 346776666 8998773
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecc--ccc-CCCCHHH
Q 010211 341 LGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG--ETA-HGKFPLK 417 (515)
Q Consensus 341 Lg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~--ETa-~G~yPve 417 (515)
.+.. ....+.++.+++.|..+++.+ ....+ .| ....+..++|.+++.+ .|. ...++..
T Consensus 88 ----~~~~---~~~~~~~~~~~~~~~~~g~~~-------~~~~~--~~---~~~~~~~~~d~i~~~~~~~g~tg~~~~~~ 148 (211)
T cd00429 88 ----AEAT---DHLHRTIQLIKELGMKAGVAL-------NPGTP--VE---VLEPYLDEVDLVLVMSVNPGFGGQKFIPE 148 (211)
T ss_pred ----ccch---hhHHHHHHHHHHCCCeEEEEe-------cCCCC--HH---HHHHHHhhCCEEEEEEECCCCCCcccCHH
Confidence 1111 222455888899999988853 11111 11 1233445578776532 122 2356667
Q ss_pred HHHHHHHHHHHHh
Q 010211 418 AVKVMHTVALRTE 430 (515)
Q Consensus 418 aV~~m~~I~~~aE 430 (515)
..+.++++.+...
T Consensus 149 ~~~~i~~~~~~~~ 161 (211)
T cd00429 149 VLEKIRKLRELIP 161 (211)
T ss_pred HHHHHHHHHHHHH
Confidence 7777766655554
No 185
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=69.25 E-value=38 Score=34.70 Aligned_cols=97 Identities=12% Similarity=0.145 Sum_probs=58.9
Q ss_pred HHhhcchh-cCCcEEEec------ccCCHHHHHH-HHHHHHhcCCCceEEEEec---ChhhhhcHHHHHhh-cCeeEEcC
Q 010211 271 EDIKFGVD-NQVDFYAVS------FVKDAKVVHE-LKDYLKSCNADIHVIVKIE---SADSIPNLHSIISA-SDGAMVAR 338 (515)
Q Consensus 271 ~dI~~al~-~gvD~ValS------fVrsa~dv~~-vr~~l~~~~~~i~IIaKIE---t~~aveNldeIl~~-sDgImIgr 338 (515)
+.+++.++ .|+++|.+. +.=+.++-.+ ++..++..+.++.||+.+- |.++++.....-+. +|++|+-+
T Consensus 28 ~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~ 107 (293)
T PRK04147 28 RLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVT 107 (293)
T ss_pred HHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 55578888 999998763 1112223223 3344555567899999984 56666666665555 89999987
Q ss_pred CcccccCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 010211 339 GDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (515)
Q Consensus 339 gDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivA 371 (515)
-...- . .-..+.+..-+.|.+.+.|+++.
T Consensus 108 P~y~~---~-~~~~l~~~f~~va~a~~lPv~iY 136 (293)
T PRK04147 108 PFYYP---F-SFEEICDYYREIIDSADNPMIVY 136 (293)
T ss_pred CcCCC---C-CHHHHHHHHHHHHHhCCCCEEEE
Confidence 54311 1 11233334444455678899885
No 186
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=69.24 E-value=79 Score=32.54 Aligned_cols=154 Identities=12% Similarity=0.111 Sum_probs=90.4
Q ss_pred CCCCCHhhHHHh-hcchh--cCCcEEEecccCCHHHHHHHHHHHHhcCC-CceEEEEecChhhhhcHHHHHhhc-CeeEE
Q 010211 262 LPSITDKDWEDI-KFGVD--NQVDFYAVSFVKDAKVVHELKDYLKSCNA-DIHVIVKIESADSIPNLHSIISAS-DGAMV 336 (515)
Q Consensus 262 lp~ltekD~~dI-~~al~--~gvD~ValSfVrsa~dv~~vr~~l~~~~~-~i~IIaKIEt~~aveNldeIl~~s-DgImI 336 (515)
-|..|++|++.+ +.|.+ +++..|+++ +..+..+++.|+..+. ++.+.+=|==|.|-...+..+..+ .++--
T Consensus 20 ~p~~T~~~I~~lc~eA~~~~~~faaVcV~----P~~v~~a~~~L~~~~~~~vkv~tVigFP~G~~~t~~K~~Ea~~Ai~~ 95 (257)
T PRK05283 20 NDDDTDEKVIALCHQAKTPVGNTAAICIY----PRFIPIARKTLREQGTPEIRIATVTNFPHGNDDIDIALAETRAAIAY 95 (257)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCeeEEEEC----HHHHHHHHHHhcccCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHc
Confidence 367788887554 67777 588877664 6678888888864343 688887786666666665544431 11111
Q ss_pred cC--CcccccCCC------CCHHHHHHHHHHHHHhcCCc--EEEEeccccccccCCCcChHH-HhHH-HHHHHhCCcEEe
Q 010211 337 AR--GDLGAELPI------EDVPLLQEDIIRRCRSMQKP--VIVATNMLESMIDHPTPTRAE-VSDI-AIAVREGADAVM 404 (515)
Q Consensus 337 gr--gDLg~elg~------e~v~~aqk~Ii~~c~~aGKP--vivATqmLeSMi~~~~PtrAE-v~Dv-anaV~~G~D~vm 404 (515)
|- =|+-+.+|. +.+.+-.+.+.+.|.. |+| ||+ ..+.-+..| +... --++..|+|.|=
T Consensus 96 GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~-~~~lKVIl---------Et~~L~~ee~i~~a~~~a~~aGADFVK 165 (257)
T PRK05283 96 GADEVDVVFPYRALMAGNEQVGFELVKACKEACAA-NVLLKVII---------ETGELKDEALIRKASEIAIKAGADFIK 165 (257)
T ss_pred CCCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCC-CceEEEEE---------eccccCCHHHHHHHHHHHHHhCCCEEE
Confidence 11 133333332 3455555666666642 444 465 445555554 4433 346778999987
Q ss_pred ecccccCCCCHHHHHHHHHHHHHHH
Q 010211 405 LSGETAHGKFPLKAVKVMHTVALRT 429 (515)
Q Consensus 405 Ls~ETa~G~yPveaV~~m~~I~~~a 429 (515)
-|.-=..+.=.+|.|+.|.+.+++.
T Consensus 166 TSTGf~~~gAt~edv~lm~~~i~~~ 190 (257)
T PRK05283 166 TSTGKVPVNATLEAARIMLEVIRDM 190 (257)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHhc
Confidence 5522221223469999998887653
No 187
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=69.09 E-value=91 Score=32.15 Aligned_cols=113 Identities=17% Similarity=0.161 Sum_probs=61.6
Q ss_pred HHhhcchhcCCcEEEecccCCH--------HHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEc-CCc
Q 010211 271 EDIKFGVDNQVDFYAVSFVKDA--------KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVA-RGD 340 (515)
Q Consensus 271 ~dI~~al~~gvD~ValSfVrsa--------~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIg-rgD 340 (515)
+.++.+.+.|+|.|.+.+ ..+ +.+.++++.+ +.++++|.- ...+......+. +|+|.+. +|
T Consensus 133 ~~i~~~~~~g~~~i~l~~-~~p~~~~~~~~~~i~~l~~~~-----~~pvivK~v--~s~~~a~~a~~~G~d~I~v~~~g- 203 (299)
T cd02809 133 DLLRRAEAAGYKALVLTV-DTPVLGRRLTWDDLAWLRSQW-----KGPLILKGI--LTPEDALRAVDAGADGIVVSNHG- 203 (299)
T ss_pred HHHHHHHHcCCCEEEEec-CCCCCCCCCCHHHHHHHHHhc-----CCCEEEeec--CCHHHHHHHHHCCCCEEEEcCCC-
Confidence 445566677999887643 222 3444444332 367888831 233333444444 8999884 22
Q ss_pred ccccC--CCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecc
Q 010211 341 LGAEL--PIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG 407 (515)
Q Consensus 341 Lg~el--g~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ 407 (515)
|..+ +.+ -.....++.+.+. -..|+|.. .+.-+ -.|++.++..|+|+||+..
T Consensus 204 -G~~~~~g~~-~~~~l~~i~~~~~-~~ipvia~---------GGI~~---~~d~~kal~lGAd~V~ig~ 257 (299)
T cd02809 204 -GRQLDGAPA-TIDALPEIVAAVG-GRIEVLLD---------GGIRR---GTDVLKALALGADAVLIGR 257 (299)
T ss_pred -CCCCCCCcC-HHHHHHHHHHHhc-CCCeEEEe---------CCCCC---HHHHHHHHHcCCCEEEEcH
Confidence 2221 222 2223333333221 14788773 34433 3478899999999999853
No 188
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=68.64 E-value=63 Score=33.88 Aligned_cols=117 Identities=17% Similarity=0.257 Sum_probs=76.9
Q ss_pred cccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHH-hc
Q 010211 287 SFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCR-SM 364 (515)
Q Consensus 287 SfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~-~a 364 (515)
.-..++++|.++++.. +++||+|+=--- +...+.+.+. +|.| | ..+..-+ . ...+...+ +.
T Consensus 58 ~Rm~~p~~I~aIk~~V-----~iPVigk~Righ-~~Ea~~L~~~GvDiI-----D-~Te~lrp--a---d~~~~~~K~~f 120 (293)
T PRK04180 58 ARMADPKMIEEIMDAV-----SIPVMAKARIGH-FVEAQILEALGVDYI-----D-ESEVLTP--A---DEEYHIDKWDF 120 (293)
T ss_pred eecCCHHHHHHHHHhC-----CCCeEEeehhhH-HHHHHHHHHcCCCEE-----e-ccCCCCc--h---HHHHHHHHHHc
Confidence 4457888888777654 677887764221 5555555555 7877 4 2222212 1 12223323 34
Q ss_pred CCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHHHHHHHHhcCCCC
Q 010211 365 QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 435 (515)
Q Consensus 365 GKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 435 (515)
+.|++. ..- .+.+.-+++..|+|++--+||...|+ -+|||+-|+.|..++-...-|
T Consensus 121 ~~~fma-----------d~~---~l~EAlrai~~GadmI~Ttge~gtg~-v~~av~h~r~~~~~i~~L~gy 176 (293)
T PRK04180 121 TVPFVC-----------GAR---NLGEALRRIAEGAAMIRTKGEAGTGN-VVEAVRHMRQINGEIRRLTSM 176 (293)
T ss_pred CCCEEc-----------cCC---CHHHHHHHHHCCCCeeeccCCCCCcc-HHHHHHHHHHHHHHHHHHhCC
Confidence 788765 122 34556789999999999999988998 589999999999988865444
No 189
>PRK00208 thiG thiazole synthase; Reviewed
Probab=68.45 E-value=1.3e+02 Score=30.93 Aligned_cols=71 Identities=31% Similarity=0.320 Sum_probs=49.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHHH
Q 010211 345 LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHT 424 (515)
Q Consensus 345 lg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~ 424 (515)
.|+.. ++..+.+.+. .+.||++ ..+.-+. +|++.++..|+|++++.+--+.++-|.+-.+.+..
T Consensus 159 ~gi~~-~~~i~~i~e~---~~vpVIv---------eaGI~tp---eda~~AmelGAdgVlV~SAItka~dP~~ma~af~~ 222 (250)
T PRK00208 159 LGLLN-PYNLRIIIEQ---ADVPVIV---------DAGIGTP---SDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKL 222 (250)
T ss_pred CCCCC-HHHHHHHHHh---cCCeEEE---------eCCCCCH---HHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHH
Confidence 34444 5555555543 4789998 3444443 36779999999999999888888889887777776
Q ss_pred HHHHHhc
Q 010211 425 VALRTES 431 (515)
Q Consensus 425 I~~~aE~ 431 (515)
-++.-..
T Consensus 223 Av~aGr~ 229 (250)
T PRK00208 223 AVEAGRL 229 (250)
T ss_pred HHHHHHH
Confidence 6655443
No 190
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=68.39 E-value=9.1 Score=41.94 Aligned_cols=49 Identities=20% Similarity=0.296 Sum_probs=40.4
Q ss_pred eEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHH
Q 010211 101 TKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKE 149 (515)
Q Consensus 101 TKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~ 149 (515)
-.+=+.+|..-++.+..+.|+++|+++.-++.+||....+.+.|+.+|+
T Consensus 213 l~V~aav~~~~~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~ 261 (450)
T TIGR01302 213 LIVGAAVGTREFDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKK 261 (450)
T ss_pred EEEEEEecCchhHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHH
Confidence 3455678887788899999999999999999999988777777766664
No 191
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=68.38 E-value=81 Score=32.41 Aligned_cols=106 Identities=13% Similarity=0.247 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 010211 292 AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (515)
Q Consensus 292 a~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivA 371 (515)
.+.+..++++..+. .+.+++-+-.+..++-+. +.+|.+-||-+++.- ..+++.+.+.||||++.
T Consensus 77 ~~gl~~l~~~~~~~--Gl~~~te~~d~~~~~~l~---~~vd~~kIga~~~~n-----------~~LL~~~a~~gkPV~lk 140 (266)
T PRK13398 77 EEGLKILKEVGDKY--NLPVVTEVMDTRDVEEVA---DYADMLQIGSRNMQN-----------FELLKEVGKTKKPILLK 140 (266)
T ss_pred HHHHHHHHHHHHHc--CCCEEEeeCChhhHHHHH---HhCCEEEECcccccC-----------HHHHHHHhcCCCcEEEe
Confidence 44566678887553 477888777776665554 458999999766532 44666777899999995
Q ss_pred eccccccccCCCcChHHHhHHHHHHH-hCCcEEee--cccccCCCCHHHHHHH
Q 010211 372 TNMLESMIDHPTPTRAEVSDIAIAVR-EGADAVML--SGETAHGKFPLKAVKV 421 (515)
Q Consensus 372 TqmLeSMi~~~~PtrAEv~DvanaV~-~G~D~vmL--s~ETa~G~yPveaV~~ 421 (515)
|. ...+-.|+...+..+. .|..-++| .|=.+...||.+.+.+
T Consensus 141 ~G--------~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl 185 (266)
T PRK13398 141 RG--------MSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDL 185 (266)
T ss_pred CC--------CCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHH
Confidence 42 1346678777776665 56644444 2221345898665544
No 192
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=68.31 E-value=1.5e+02 Score=32.25 Aligned_cols=192 Identities=20% Similarity=0.151 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhhcCCceEEEEEecCCCeeeeeccCCcEEEecCCEEEEEeecCCCCcc-eEEe-cccccccccCcCCEEE
Q 010211 142 KTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQPIILKEGQEFNFTIKRGVSTED-TVSV-NYDDFVNDVEVGDILL 219 (515)
Q Consensus 142 ~~i~~ir~~~~~~~~~~i~I~lDL~GPkIRtG~l~~~i~L~~G~~v~lt~~~~~~~~~-~i~v-~~~~l~~~v~~Gd~Il 219 (515)
++...|+.+-+..- ..+.|-..+.+-+.+. .-.+.|+..+....-. .+|= ++..+--.++.|+.|+
T Consensus 10 el~~~ik~~le~~~-~~v~v~gEis~~~~~~-----------sGH~Yf~Lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~ 77 (438)
T PRK00286 10 ELNRYVKSLLERDL-GQVWVRGEISNFTRHS-----------SGHWYFTLKDEIAQIRCVMFKGSARRLKFKPEEGMKVL 77 (438)
T ss_pred HHHHHHHHHHHhhC-CcEEEEEEeCCCeeCC-----------CCeEEEEEEcCCcEEEEEEEcChhhcCCCCCCCCCEEE
Confidence 34444555444322 5677777776655441 1134444443221111 1121 2334445678999988
Q ss_pred Ee--------CCeeEEEEEEEeCCeEEEEEeeCcEec----------cCceeeeCCCccCCCCCCHhhHHHhhcchhcCC
Q 010211 220 VD--------GGMMSLAVKSKTKDLVKCIVVDGGELK----------SRRHLNVRGKSANLPSITDKDWEDIKFGVDNQV 281 (515)
Q Consensus 220 iD--------DG~I~l~V~~~~~~~v~~~V~~gG~L~----------s~KgVnlpg~~~~lp~ltekD~~dI~~al~~gv 281 (515)
+. .|.++|.|.++++.++ |.|. ..+|+-=|....++|.+ +
T Consensus 78 v~g~~~~y~~~g~~ql~v~~i~~~g~-------G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~~---------------p 135 (438)
T PRK00286 78 VRGKVSLYEPRGDYQLIVEEIEPAGI-------GALAAAFEQLKEKLAAEGLFDPERKKPLPFF---------------P 135 (438)
T ss_pred EEEEEEEECCCCCEEEEEEEeeeCCc-------cHHHHHHHHHHHHHHHCCCCChhhcCCCCCC---------------C
Confidence 74 5778888777765442 2211 22233333333444443 2
Q ss_pred cEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh--------cCeeEEcCCcccccCCCCCHHH-
Q 010211 282 DFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA--------SDGAMVARGDLGAELPIEDVPL- 352 (515)
Q Consensus 282 D~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~--------sDgImIgrgDLg~elg~e~v~~- 352 (515)
.-|++=--.++.-++.+...+......+.+..-==+.+|-....+|++. .|.|+|+||-=+. |++..
T Consensus 136 ~~I~viTs~~gAa~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~----eDL~~F 211 (438)
T PRK00286 136 KRIGVITSPTGAAIRDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGSL----EDLWAF 211 (438)
T ss_pred CEEEEEeCCccHHHHHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCH----HHhhcc
Confidence 2333333366777777777776655433333322234444445555553 3999999993221 22221
Q ss_pred HHHHHHHHHHhcCCcEEEE
Q 010211 353 LQEDIIRRCRSMQKPVIVA 371 (515)
Q Consensus 353 aqk~Ii~~c~~aGKPvivA 371 (515)
--..++++.-+.-.|||.|
T Consensus 212 n~e~v~~ai~~~~~Pvis~ 230 (438)
T PRK00286 212 NDEAVARAIAASRIPVISA 230 (438)
T ss_pred CcHHHHHHHHcCCCCEEEe
Confidence 2356677788889999986
No 193
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=68.25 E-value=52 Score=33.76 Aligned_cols=97 Identities=16% Similarity=0.221 Sum_probs=56.2
Q ss_pred HHhhcchhcCCcEEEec------ccCCHHHHHH-HHHHHHhcCCCceEEEEec--ChhhhhcHHHHHhh-cCeeEEcCCc
Q 010211 271 EDIKFGVDNQVDFYAVS------FVKDAKVVHE-LKDYLKSCNADIHVIVKIE--SADSIPNLHSIISA-SDGAMVARGD 340 (515)
Q Consensus 271 ~dI~~al~~gvD~ValS------fVrsa~dv~~-vr~~l~~~~~~i~IIaKIE--t~~aveNldeIl~~-sDgImIgrgD 340 (515)
+.+++.++.|+|+|.+. +.-+.++-.+ ++..++..+.++.||+.+- |.++++......+. +|++|+.+--
T Consensus 25 ~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~t~~~i~~a~~a~~~Gad~v~~~pP~ 104 (289)
T cd00951 25 AHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGYGTATAIAYAQAAEKAGADGILLLPPY 104 (289)
T ss_pred HHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCCCHHHHHHHHHHHHHhCCCEEEECCCC
Confidence 45578889999998763 2233444333 3444555567888999884 23333322222222 7999997654
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 010211 341 LGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (515)
Q Consensus 341 Lg~elg~e~v~~aqk~Ii~~c~~aGKPvivA 371 (515)
... .+.+.+....+.+ |.+.+.|+++.
T Consensus 105 y~~-~~~~~i~~~f~~v---~~~~~~pi~lY 131 (289)
T cd00951 105 LTE-APQEGLYAHVEAV---CKSTDLGVIVY 131 (289)
T ss_pred CCC-CCHHHHHHHHHHH---HhcCCCCEEEE
Confidence 321 1223444444444 55568999985
No 194
>PLN02321 2-isopropylmalate synthase
Probab=68.16 E-value=75 Score=36.75 Aligned_cols=160 Identities=17% Similarity=0.236 Sum_probs=98.7
Q ss_pred eeeeCCCccCCCCCCHhhHHHh-hcchhcCCcEEEecc-cCCHHHHHHHHHHHHhcCCCc---eEEEEec-----Chhhh
Q 010211 252 HLNVRGKSANLPSITDKDWEDI-KFGVDNQVDFYAVSF-VKDAKVVHELKDYLKSCNADI---HVIVKIE-----SADSI 321 (515)
Q Consensus 252 gVnlpg~~~~lp~ltekD~~dI-~~al~~gvD~ValSf-Vrsa~dv~~vr~~l~~~~~~i---~IIaKIE-----t~~av 321 (515)
|-.-|+.. +|.+++..| +.-.+.|+|.|=+.| .-++.|...++...+.....+ .++++|- +.+++
T Consensus 97 GeQ~~g~~-----~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dI 171 (632)
T PLN02321 97 GEQSPGAT-----LTSKEKLDIARQLAKLGVDIIEAGFPIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDI 171 (632)
T ss_pred cccCCCCC-----CCHHHHHHHHHHHHHcCCCEEEEeCcCCCccHHHHHHHHHHhcccCCCccccceeeeeehhccHHhH
Confidence 44445544 466777555 444568999998776 577788877776654321111 1223322 33333
Q ss_pred hcHHHHHhh---c----CeeEEcCCccccc----CCCCCHHHHHHHHHHHHHhcCCc-EEEEeccccccccCCCcChHH-
Q 010211 322 PNLHSIISA---S----DGAMVARGDLGAE----LPIEDVPLLQEDIIRRCRSMQKP-VIVATNMLESMIDHPTPTRAE- 388 (515)
Q Consensus 322 eNldeIl~~---s----DgImIgrgDLg~e----lg~e~v~~aqk~Ii~~c~~aGKP-vivATqmLeSMi~~~~PtrAE- 388 (515)
|..++. + =.++++-.|+-.+ +..+++.+..+++++.|+++|.. |.+. ...-+|++
T Consensus 172 ---d~A~~al~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs---------~EDa~rtd~ 239 (632)
T PLN02321 172 ---DAAWEAVKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFS---------PEDAGRSDP 239 (632)
T ss_pred ---HHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEe---------cccCCCCCH
Confidence 333332 1 2356665565332 23478888899999999999985 4442 12333443
Q ss_pred --HhHHHH-HHHhCCcEEeecccccCCCCHHHHHHHHHHHHHHH
Q 010211 389 --VSDIAI-AVREGADAVMLSGETAHGKFPLKAVKVMHTVALRT 429 (515)
Q Consensus 389 --v~Dvan-aV~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~a 429 (515)
+..++. ++..|+|.+-|. +|.=...|.+.-+.+..+....
T Consensus 240 d~l~~~~~~a~~aGa~~I~L~-DTvG~~~P~~v~~li~~l~~~~ 282 (632)
T PLN02321 240 EFLYRILGEVIKAGATTLNIP-DTVGYTLPSEFGQLIADIKANT 282 (632)
T ss_pred HHHHHHHHHHHHcCCCEEEec-ccccCCCHHHHHHHHHHHHHhc
Confidence 444444 456799999985 8888899999988888887654
No 195
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=67.85 E-value=81 Score=32.47 Aligned_cols=147 Identities=16% Similarity=0.133 Sum_probs=83.3
Q ss_pred CCCCHhhHHHhhcchhcCCcEEEecccC-------------CHHHHHHHHHHHHhcCCCceEEEEec------Ch-hhhh
Q 010211 263 PSITDKDWEDIKFGVDNQVDFYAVSFVK-------------DAKVVHELKDYLKSCNADIHVIVKIE------SA-DSIP 322 (515)
Q Consensus 263 p~ltekD~~dI~~al~~gvD~ValSfVr-------------sa~dv~~vr~~l~~~~~~i~IIaKIE------t~-~ave 322 (515)
-.+|-+|.--.+.+-+.|+|.+.++.-- +-++....-..+.+.-....|++=++ ++ ++++
T Consensus 18 ~~~tayD~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y~~~~~~av~ 97 (264)
T PRK00311 18 VMLTAYDYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPFGSYQASPEQALR 97 (264)
T ss_pred EEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCCccCCHHHHHH
Confidence 3456677766666667899988754210 11111111122233333446777665 22 3578
Q ss_pred cHHHHHh-h-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEE----EEeccccc---cccCC-CcChHH--Hh
Q 010211 323 NLHSIIS-A-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVI----VATNMLES---MIDHP-TPTRAE--VS 390 (515)
Q Consensus 323 NldeIl~-~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvi----vATqmLeS---Mi~~~-~PtrAE--v~ 390 (515)
|.-.+++ . ++||.|-=| ..+...|+++.++|+||+ +--|--.. +...+ +..+++ +.
T Consensus 98 ~a~r~~~~aGa~aVkiEdg------------~~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ 165 (264)
T PRK00311 98 NAGRLMKEAGAHAVKLEGG------------EEVAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLE 165 (264)
T ss_pred HHHHHHHHhCCeEEEEcCc------------HHHHHHHHHHHHCCCCEeeeecccceeecccCCeeeecCCHHHHHHHHH
Confidence 8777777 4 899998533 246677888889999996 22221111 11122 222233 66
Q ss_pred HHHHHHHhCCcEEeecccccCCCCHHHHHHHHHHHHHHHh
Q 010211 391 DIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTE 430 (515)
Q Consensus 391 DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE 430 (515)
+.-.+...|+|+++|- |- |. +.+..|+++..
T Consensus 166 ra~a~~eAGA~~i~lE-----~v-~~---~~~~~i~~~l~ 196 (264)
T PRK00311 166 DAKALEEAGAFALVLE-----CV-PA---ELAKEITEALS 196 (264)
T ss_pred HHHHHHHCCCCEEEEc-----CC-CH---HHHHHHHHhCC
Confidence 6667778999999994 22 33 34556655553
No 196
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=67.81 E-value=72 Score=31.78 Aligned_cols=134 Identities=13% Similarity=0.111 Sum_probs=74.8
Q ss_pred hhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCCHH
Q 010211 273 IKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVP 351 (515)
Q Consensus 273 I~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e~v~ 351 (515)
++.|++.|+|+|-++. +-..+...++.+. .+..|=.- +. .++.+.+..+. +|.|.+||--=+..=+ ..-+
T Consensus 74 ~dlA~~~~AdGVHlGq--~D~~~~~ar~~~~---~~~iIG~S--~h-~~eea~~A~~~g~DYv~~GpifpT~tK~-~~~~ 144 (211)
T COG0352 74 VDLALAVGADGVHLGQ--DDMPLAEARELLG---PGLIIGLS--TH-DLEEALEAEELGADYVGLGPIFPTSTKP-DAPP 144 (211)
T ss_pred HHHHHhCCCCEEEcCC--cccchHHHHHhcC---CCCEEEee--cC-CHHHHHHHHhcCCCEEEECCcCCCCCCC-CCCc
Confidence 3455678999998874 3234455666663 33333221 11 33333333334 8999999742211100 0001
Q ss_pred HHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHHHHHHH
Q 010211 352 LLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALR 428 (515)
Q Consensus 352 ~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~ 428 (515)
.-.+.+-+..+...+|++.- -.-.|.+++ ..+..|+|+|-+.+......-|-.+++-+.+....
T Consensus 145 ~G~~~l~~~~~~~~iP~vAI--------GGi~~~nv~-----~v~~~Ga~gVAvvsai~~a~d~~~a~~~~~~~~~~ 208 (211)
T COG0352 145 LGLEGLREIRELVNIPVVAI--------GGINLENVP-----EVLEAGADGVAVVSAITSAADPAAAAKALRNALED 208 (211)
T ss_pred cCHHHHHHHHHhCCCCEEEE--------cCCCHHHHH-----HHHHhCCCeEEehhHhhcCCCHHHHHHHHHHHHHh
Confidence 11111113333334998762 334454443 66788999999887777788898999888877654
No 197
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=67.74 E-value=37 Score=34.35 Aligned_cols=149 Identities=21% Similarity=0.206 Sum_probs=86.7
Q ss_pred CCCCCHhhHHHh-hcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEec-----ChhhhhcHHHHHhh-----
Q 010211 262 LPSITDKDWEDI-KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIE-----SADSIPNLHSIISA----- 330 (515)
Q Consensus 262 lp~ltekD~~dI-~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIE-----t~~aveNldeIl~~----- 330 (515)
-|..|++|...| ..|.++|+..|++. +.-|...+++++.. ....|..=|= +..++.-.+...++
T Consensus 18 k~~~T~~~I~~l~~eA~~~~f~avCV~----P~~V~~A~~~l~g~-~~~~v~tVigFP~G~~~t~~K~~Ea~~ai~~GAd 92 (228)
T COG0274 18 KPDATEEDIARLCAEAKEYGFAAVCVN----PSYVPLAKEALKGS-TVVRVCTVIGFPLGANTTAVKAAEAREAIENGAD 92 (228)
T ss_pred CCCCCHHHHHHHHHHHHhhCceEEEEC----cchHHHHHHHhccC-CCeEEEEecCCCCCCChHHHHHHHHHHHHHcCCC
Confidence 367788887444 77888998877764 45677788888653 2222333332 22222222222222
Q ss_pred -cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccccccccCCCcChHHHhHHH-HHHHhCCcEEeecc
Q 010211 331 -SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSM-QKPVIVATNMLESMIDHPTPTRAEVSDIA-IAVREGADAVMLSG 407 (515)
Q Consensus 331 -sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~a-GKPvivATqmLeSMi~~~~PtrAEv~Dva-naV~~G~D~vmLs~ 407 (515)
.|.++ -.|-|- +=.++.|..-.+.+.++|..+ -..||+-| +.-+..|....+ -++..|+|.|=-|.
T Consensus 93 EiDmVi-nig~~k-~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt---------~~Lt~ee~~~A~~i~~~aGAdFVKTST 161 (228)
T COG0274 93 EIDMVI-NIGALK-SGNWEAVEREIRAVVEACADAVVLKVILET---------GLLTDEEKRKACEIAIEAGADFVKTST 161 (228)
T ss_pred eeeeee-eHHHHh-cCCHHHHHHHHHHHHHHhCCCceEEEEEec---------cccCHHHHHHHHHHHHHhCCCEEEcCC
Confidence 34332 222221 112355667777777777764 44567744 666667744333 35678999987664
Q ss_pred cccCCCCHHHHHHHHHHHH
Q 010211 408 ETAHGKFPLKAVKVMHTVA 426 (515)
Q Consensus 408 ETa~G~yPveaV~~m~~I~ 426 (515)
-=+-|.--+|.|+.|.+++
T Consensus 162 Gf~~~gAT~edv~lM~~~v 180 (228)
T COG0274 162 GFSAGGATVEDVKLMKETV 180 (228)
T ss_pred CCCCCCCCHHHHHHHHHHh
Confidence 3334455579999999887
No 198
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=67.66 E-value=1.2e+02 Score=31.80 Aligned_cols=54 Identities=22% Similarity=0.222 Sum_probs=33.7
Q ss_pred CCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeeccc---ccCCCCHHHHHHHHHHHHHHHhc
Q 010211 365 QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGE---TAHGKFPLKAVKVMHTVALRTES 431 (515)
Q Consensus 365 GKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~E---Ta~G~yPveaV~~m~~I~~~aE~ 431 (515)
..|+|.+. +.-+ -.|++.++..|+|++++..- .... =+-..++++..+..+...
T Consensus 255 ~ipIiasG---------GIr~---~~dv~kal~lGAd~V~i~~~~L~~~~~-g~~~~~~~i~~~~~el~~ 311 (326)
T cd02811 255 DLPLIASG---------GIRN---GLDIAKALALGADLVGMAGPFLKAALE-GEEAVIETIEQIIEELRT 311 (326)
T ss_pred CCcEEEEC---------CCCC---HHHHHHHHHhCCCEEEEcHHHHHHHhc-CHHHHHHHHHHHHHHHHH
Confidence 68888743 3333 35888999999999998741 1111 233444566666666554
No 199
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=67.64 E-value=66 Score=32.89 Aligned_cols=146 Identities=16% Similarity=0.186 Sum_probs=82.3
Q ss_pred CCCHhhHHHhhcchhcCCcEEEecccC-------------CHHHHHHHHHHHHhcCCCceEEEEec-------Chhhhhc
Q 010211 264 SITDKDWEDIKFGVDNQVDFYAVSFVK-------------DAKVVHELKDYLKSCNADIHVIVKIE-------SADSIPN 323 (515)
Q Consensus 264 ~ltekD~~dI~~al~~gvD~ValSfVr-------------sa~dv~~vr~~l~~~~~~i~IIaKIE-------t~~aveN 323 (515)
.+|-+|.--.+.+-+.|+|.+.++.-- +-++...--..+.+.-+...|++=++ -.++++|
T Consensus 16 ~~~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~ 95 (254)
T cd06557 16 MLTAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRN 95 (254)
T ss_pred EEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHH
Confidence 445667655566667799988654211 11111111112233333444777665 1234677
Q ss_pred HHHHHh-h-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEE----EEecccccc---cc-CCCcChHH--HhH
Q 010211 324 LHSIIS-A-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVI----VATNMLESM---ID-HPTPTRAE--VSD 391 (515)
Q Consensus 324 ldeIl~-~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvi----vATqmLeSM---i~-~~~PtrAE--v~D 391 (515)
.-.+++ . ++||.|-=| ..+...|+++.++|+||+ +--|--..+ .. .-...+++ +.+
T Consensus 96 a~r~~~~aGa~aVkiEd~------------~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~r 163 (254)
T cd06557 96 AARLMKEAGADAVKLEGG------------AEVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLED 163 (254)
T ss_pred HHHHHHHhCCeEEEEcCc------------HHHHHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHHHHHHHH
Confidence 777776 4 889988533 256778888999999987 222211111 11 11233333 677
Q ss_pred HHHHHHhCCcEEeecccccCCCCHHHHHHHHHHHHHHHh
Q 010211 392 IAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTE 430 (515)
Q Consensus 392 vanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE 430 (515)
.-.+...|+|+++|- |- |. +.+..|+++..
T Consensus 164 a~a~~~AGA~~i~lE-----~v-~~---~~~~~i~~~v~ 193 (254)
T cd06557 164 ALALEEAGAFALVLE-----CV-PA---ELAKEITEALS 193 (254)
T ss_pred HHHHHHCCCCEEEEc-----CC-CH---HHHHHHHHhCC
Confidence 777789999999994 22 32 35666666653
No 200
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=67.57 E-value=90 Score=30.29 Aligned_cols=144 Identities=21% Similarity=0.245 Sum_probs=82.8
Q ss_pred CCCCHhhHHHh-hcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHh-------h-cCe
Q 010211 263 PSITDKDWEDI-KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIIS-------A-SDG 333 (515)
Q Consensus 263 p~ltekD~~dI-~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~-------~-sDg 333 (515)
|..|+.|.+.+ +.+.++|+|.|.++ +..+..+++++.. ..+.+-+=+=.+.|-...+..+. . +|.
T Consensus 12 p~~t~~~i~~~~~~a~~~~~~av~v~----p~~v~~~~~~l~~--~~~~v~~~~~fp~g~~~~~~k~~eve~A~~~GAde 85 (203)
T cd00959 12 PDATEEDIRKLCDEAKEYGFAAVCVN----PCFVPLAREALKG--SGVKVCTVIGFPLGATTTEVKVAEAREAIADGADE 85 (203)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEc----HHHHHHHHHHcCC--CCcEEEEEEecCCCCCcHHHHHHHHHHHHHcCCCE
Confidence 77788887544 67788899998875 5666667777753 33555555655555444443333 3 565
Q ss_pred eEEcCCcccccCCC------CCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHH-HHHHhCCcEEeec
Q 010211 334 AMVARGDLGAELPI------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIA-IAVREGADAVMLS 406 (515)
Q Consensus 334 ImIgrgDLg~elg~------e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~Dva-naV~~G~D~vmLs 406 (515)
|-+- +.+|. +.+..-.+++.+.|. |+|+-+ ++|. +.-+..++...+ -++..|+|.+=-+
T Consensus 86 vdvv-----~~~g~~~~~~~~~~~~ei~~v~~~~~--g~~lkv---I~e~----~~l~~~~i~~a~ria~e~GaD~IKTs 151 (203)
T cd00959 86 IDMV-----INIGALKSGDYEAVYEEIAAVVEACG--GAPLKV---ILET----GLLTDEEIIKACEIAIEAGADFIKTS 151 (203)
T ss_pred EEEe-----ecHHHHhCCCHHHHHHHHHHHHHhcC--CCeEEE---EEec----CCCCHHHHHHHHHHHHHhCCCEEEcC
Confidence 5443 12221 235555566666664 788754 2222 222344554443 3567799987654
Q ss_pred -ccccCCCCHHHHHHHHHHHHH
Q 010211 407 -GETAHGKFPLKAVKVMHTVAL 427 (515)
Q Consensus 407 -~ETa~G~yPveaV~~m~~I~~ 427 (515)
|=++.|.- ++.|+.|.++++
T Consensus 152 TG~~~~~at-~~~v~~~~~~~~ 172 (203)
T cd00959 152 TGFGPGGAT-VEDVKLMKEAVG 172 (203)
T ss_pred CCCCCCCCC-HHHHHHHHHHhC
Confidence 22223333 478888888877
No 201
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=67.45 E-value=1e+02 Score=32.60 Aligned_cols=90 Identities=22% Similarity=0.227 Sum_probs=50.7
Q ss_pred CceEEEEecChhhhhcHHHHHhh-----cCeeEEcCC-----ccc-----ccC-CC---CCHHHHHHHHHHHHHhc--CC
Q 010211 308 DIHVIVKIESADSIPNLHSIISA-----SDGAMVARG-----DLG-----AEL-PI---EDVPLLQEDIIRRCRSM--QK 366 (515)
Q Consensus 308 ~i~IIaKIEt~~aveNldeIl~~-----sDgImIgrg-----DLg-----~el-g~---e~v~~aqk~Ii~~c~~a--GK 366 (515)
++.|++||----..+++.++++. +|||.+-=. |+. ... |+ +.-+...+.+-+..++. +.
T Consensus 211 ~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~i 290 (344)
T PRK05286 211 YVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRL 290 (344)
T ss_pred CCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCC
Confidence 48999999733222345555553 788887522 110 001 11 22233444444444555 57
Q ss_pred cEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccc
Q 010211 367 PVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGET 409 (515)
Q Consensus 367 PvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ET 409 (515)
|++-.. +.-+ ..|+..++..|+|+|++....
T Consensus 291 pIig~G---------GI~s---~eda~e~l~aGAd~V~v~~~~ 321 (344)
T PRK05286 291 PIIGVG---------GIDS---AEDAYEKIRAGASLVQIYSGL 321 (344)
T ss_pred CEEEEC---------CCCC---HHHHHHHHHcCCCHHHHHHHH
Confidence 877632 3333 346778888999999997544
No 202
>PLN02417 dihydrodipicolinate synthase
Probab=67.38 E-value=25 Score=35.89 Aligned_cols=95 Identities=13% Similarity=0.105 Sum_probs=57.5
Q ss_pred HHhhcchhcCCcEEEec------ccCCHHHHHH-HHHHHHhcCCCceEEEEec---ChhhhhcHHHHHhh-cCeeEEcCC
Q 010211 271 EDIKFGVDNQVDFYAVS------FVKDAKVVHE-LKDYLKSCNADIHVIVKIE---SADSIPNLHSIISA-SDGAMVARG 339 (515)
Q Consensus 271 ~dI~~al~~gvD~ValS------fVrsa~dv~~-vr~~l~~~~~~i~IIaKIE---t~~aveNldeIl~~-sDgImIgrg 339 (515)
+.++|.++.|+++|.+. +.-+.++-.+ ++...+..+.++.|++.+= |.++++....--+. +|++|+.+-
T Consensus 26 ~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P 105 (280)
T PLN02417 26 SLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 105 (280)
T ss_pred HHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 55578889999998763 1112222222 3334455567788999884 56666666655555 899999877
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 010211 340 DLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (515)
Q Consensus 340 DLg~elg~e~v~~aqk~Ii~~c~~aGKPvivA 371 (515)
...- .+-+.+....+.|.++ . |+++.
T Consensus 106 ~y~~-~~~~~i~~~f~~va~~----~-pi~lY 131 (280)
T PLN02417 106 YYGK-TSQEGLIKHFETVLDM----G-PTIIY 131 (280)
T ss_pred ccCC-CCHHHHHHHHHHHHhh----C-CEEEE
Confidence 6432 2224455555555542 3 88764
No 203
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=67.37 E-value=96 Score=34.39 Aligned_cols=122 Identities=20% Similarity=0.216 Sum_probs=66.7
Q ss_pred HHHhhcchhcCCcEEEeccc-C-CHHHHHHHHHH-H--Hhc---CCCceEEEEecChhhhhc---------HHHHHh---
Q 010211 270 WEDIKFGVDNQVDFYAVSFV-K-DAKVVHELKDY-L--KSC---NADIHVIVKIESADSIPN---------LHSIIS--- 329 (515)
Q Consensus 270 ~~dI~~al~~gvD~ValSfV-r-sa~dv~~vr~~-l--~~~---~~~i~IIaKIEt~~aveN---------ldeIl~--- 329 (515)
.+.++..++.|++.|..|.- . ++..+ ..+.. + ... .....|++|+-+++-... ++.+.+
T Consensus 90 ~~~v~l~l~~~V~~veasa~~~~~p~~v-~~r~~G~~~~~~g~~~~~~~ViakVsr~~vAs~f~~p~p~~~v~~L~~~G~ 168 (444)
T TIGR02814 90 WGLVDLLLRHGVRIVEASAFMQLTPALV-RYRAKGLHRDADGRVVIRNRLIAKVSRPEVAEAFMSPAPAHILQKLLAEGR 168 (444)
T ss_pred HHHHHHHHHcCCCEEEeccccCCCcchh-hhhhccccccccccccccceEEEecCCHHHHHHhcCCCcHHHHHHHHHcCC
Confidence 45566678899998876621 1 22211 11110 0 000 012478999877765433 112211
Q ss_pred -----------h--cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHh------c--CCcEEEEeccccccccCCCcChHH
Q 010211 330 -----------A--SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRS------M--QKPVIVATNMLESMIDHPTPTRAE 388 (515)
Q Consensus 330 -----------~--sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~------a--GKPvivATqmLeSMi~~~~PtrAE 388 (515)
. +|.|.+. .|=|-+.|--........|++...+ . ..|||.|. +.-|..
T Consensus 169 it~eEA~~a~~~g~aD~Ivve-~EAGGHtg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAG---------GI~t~~- 237 (444)
T TIGR02814 169 ITREEAELARRVPVADDICVE-ADSGGHTDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAG---------GIGTPE- 237 (444)
T ss_pred CCHHHHHHHHhCCCCcEEEEe-ccCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeC---------CCCCHH-
Confidence 1 5888887 7877776643333444444433222 2 35688864 444433
Q ss_pred HhHHHHHHHhCCcEEee
Q 010211 389 VSDIAIAVREGADAVML 405 (515)
Q Consensus 389 v~DvanaV~~G~D~vmL 405 (515)
+++-++..|+|+|.+
T Consensus 238 --~vaAAlaLGAdgV~~ 252 (444)
T TIGR02814 238 --AAAAAFMLGADFIVT 252 (444)
T ss_pred --HHHHHHHcCCcEEEe
Confidence 567889999999985
No 204
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=67.16 E-value=53 Score=31.65 Aligned_cols=118 Identities=15% Similarity=0.172 Sum_probs=62.5
Q ss_pred hHHHhhcchhcCCcEEEecccC-CHHHH-H-HHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh--cCeeEEcCCcccc
Q 010211 269 DWEDIKFGVDNQVDFYAVSFVK-DAKVV-H-ELKDYLKSCNADIHVIVKIESADSIPNLHSIISA--SDGAMVARGDLGA 343 (515)
Q Consensus 269 D~~dI~~al~~gvD~ValSfVr-sa~dv-~-~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~--sDgImIgrgDLg~ 343 (515)
+.++++.+.+.|+|++.+=|.. ++..+ . .++++.+.....+.-+.=+-+. -++++.+++.. .|+|-++-.|
T Consensus 8 ~~ed~~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~-~~~~i~~ia~~~~~d~Vqlhg~e--- 83 (203)
T cd00405 8 TLEDALAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAALPPFVKRVGVFVNE-DLEEILEIAEELGLDVVQLHGDE--- 83 (203)
T ss_pred CHHHHHHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCCCCCcEEEEEeCC-CHHHHHHHHHhcCCCEEEECCCC---
Confidence 4578888899999999887753 45544 2 2334333333322223333333 25555666655 6999887332
Q ss_pred cCCCCCHHHHHHHHHHHHH-hcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeeccccc
Q 010211 344 ELPIEDVPLLQEDIIRRCR-SMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETA 410 (515)
Q Consensus 344 elg~e~v~~aqk~Ii~~c~-~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa 410 (515)
+.+. ++..+ ..|.+++-+- .-...+.. +...+...|+|.+++-+.|.
T Consensus 84 --~~~~--------~~~l~~~~~~~~i~~i-------~~~~~~~~---~~~~~~~~~aD~il~dt~~~ 131 (203)
T cd00405 84 --SPEY--------CAQLRARLGLPVIKAI-------RVKDEEDL---EKAAAYAGEVDAILLDSKSG 131 (203)
T ss_pred --CHHH--------HHHHHhhcCCcEEEEE-------ecCChhhH---HHhhhccccCCEEEEcCCCC
Confidence 1111 12222 2377776321 11111111 22355668999999965544
No 205
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=67.15 E-value=55 Score=35.22 Aligned_cols=145 Identities=14% Similarity=0.192 Sum_probs=95.9
Q ss_pred HHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEe--cChhhhhcHHHHHhhcCeeEEcCCcccccCCCC
Q 010211 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKI--ESADSIPNLHSIISASDGAMVARGDLGAELPIE 348 (515)
Q Consensus 271 ~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKI--Et~~aveNldeIl~~sDgImIgrgDLg~elg~e 348 (515)
+.|..-.+.|+|.|-+. |.+.++...+++.-++. +++++|-| .-.-|+ ..+-.-+|++=|-||.+ .
T Consensus 46 ~Qi~~L~~aGceiVRva-v~~~~~a~al~~I~~~~--~iPlvADIHFd~~lAl---~a~~~G~~~iRINPGNi------g 113 (360)
T PRK00366 46 AQIKRLARAGCEIVRVA-VPDMEAAAALPEIKKQL--PVPLVADIHFDYRLAL---AAAEAGADALRINPGNI------G 113 (360)
T ss_pred HHHHHHHHcCCCEEEEc-cCCHHHHHhHHHHHHcC--CCCEEEecCCCHHHHH---HHHHhCCCEEEECCCCC------C
Confidence 44444557899999887 68888888887766554 68999977 344444 33333389999999988 3
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEE--ecccccccc--CCCcChHH-----HhHHHHHHHhCCcEEeecccccCCCCHHHHH
Q 010211 349 DVPLLQEDIIRRCRSMQKPVIVA--TNMLESMID--HPTPTRAE-----VSDIAIAVREGADAVMLSGETAHGKFPLKAV 419 (515)
Q Consensus 349 ~v~~aqk~Ii~~c~~aGKPvivA--TqmLeSMi~--~~~PtrAE-----v~DvanaV~~G~D~vmLs~ETa~G~yPveaV 419 (515)
...+-.+.++++|+++|+|+=+- .-=|+.-+. .+.||..- ...+.-+-..|++=+.+| .+-.-|.++|
T Consensus 114 ~~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~~f~~iviS---~KsS~v~~~i 190 (360)
T PRK00366 114 KRDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILEELGFDDIKIS---VKASDVQDLI 190 (360)
T ss_pred chHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEE---EEcCCHHHHH
Confidence 55678899999999999997433 322332221 12344322 333444556788888887 4555677777
Q ss_pred HHHHHHHHHHh
Q 010211 420 KVMHTVALRTE 430 (515)
Q Consensus 420 ~~m~~I~~~aE 430 (515)
+.-+.++++.+
T Consensus 191 ~ayrlla~~~d 201 (360)
T PRK00366 191 AAYRLLAKRCD 201 (360)
T ss_pred HHHHHHHhcCC
Confidence 77777765543
No 206
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=66.87 E-value=92 Score=33.36 Aligned_cols=93 Identities=24% Similarity=0.294 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEc-CCcccccCCCCCHHHHHHHHHHHHHhc--CC
Q 010211 291 DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVA-RGDLGAELPIEDVPLLQEDIIRRCRSM--QK 366 (515)
Q Consensus 291 sa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIg-rgDLg~elg~e~v~~aqk~Ii~~c~~a--GK 366 (515)
+.+++..+++.. +.+|++|.. ...+......+. +|+|.|. -| |..+. ..+.....+.+.+++. ..
T Consensus 209 ~~~~l~~lr~~~-----~~PvivKgv--~~~~dA~~a~~~G~d~I~vsnhG--Gr~ld--~~~~~~~~l~~i~~a~~~~i 277 (351)
T cd04737 209 SPADIEFIAKIS-----GLPVIVKGI--QSPEDADVAINAGADGIWVSNHG--GRQLD--GGPASFDSLPEIAEAVNHRV 277 (351)
T ss_pred CHHHHHHHHHHh-----CCcEEEecC--CCHHHHHHHHHcCCCEEEEeCCC--CccCC--CCchHHHHHHHHHHHhCCCC
Confidence 667777777654 467889932 122233333333 8999883 11 22211 1111122222223333 37
Q ss_pred cEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 367 PVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 367 PvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
|++.. .+.-+ -.|++.++..|+|+||+.
T Consensus 278 ~vi~d---------GGIr~---g~Di~kaLalGA~~V~iG 305 (351)
T cd04737 278 PIIFD---------SGVRR---GEHVFKALASGADAVAVG 305 (351)
T ss_pred eEEEE---------CCCCC---HHHHHHHHHcCCCEEEEC
Confidence 88873 34433 458999999999999974
No 207
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=66.73 E-value=35 Score=35.48 Aligned_cols=97 Identities=19% Similarity=0.201 Sum_probs=59.7
Q ss_pred HHhhcchhcCCcEEEe------cccCCHHHHHHH-HHHHHhcCCCceEEEEe---cChhhhhcHHHHHhh-cCeeEEcCC
Q 010211 271 EDIKFGVDNQVDFYAV------SFVKDAKVVHEL-KDYLKSCNADIHVIVKI---ESADSIPNLHSIISA-SDGAMVARG 339 (515)
Q Consensus 271 ~dI~~al~~gvD~Val------SfVrsa~dv~~v-r~~l~~~~~~i~IIaKI---Et~~aveNldeIl~~-sDgImIgrg 339 (515)
+.++|.++.|+|+|.+ ++.-|.++-.++ +...+..+.++.||+-+ =|.++++....--+. +||+|+-+-
T Consensus 29 ~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~P 108 (299)
T COG0329 29 RLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPP 108 (299)
T ss_pred HHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4557888999998876 223344444443 44455567788899977 355666665555555 899999754
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 010211 340 DLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (515)
Q Consensus 340 DLg~elg~e~v~~aqk~Ii~~c~~aGKPvivA 371 (515)
..--- +.+.+.+-.+.| |.+.+.|+|+.
T Consensus 109 yY~k~-~~~gl~~hf~~i---a~a~~lPvilY 136 (299)
T COG0329 109 YYNKP-SQEGLYAHFKAI---AEAVDLPVILY 136 (299)
T ss_pred CCcCC-ChHHHHHHHHHH---HHhcCCCEEEE
Confidence 33211 123444444555 55559999984
No 208
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=66.57 E-value=33 Score=35.59 Aligned_cols=112 Identities=16% Similarity=0.294 Sum_probs=70.6
Q ss_pred chhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCCCCHHHHHH
Q 010211 276 GVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQE 355 (515)
Q Consensus 276 al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~e~v~~aqk 355 (515)
++..|+|..-+ |.+... ..-++.|. .+..|-.-.-...+++-++..+.-.+++.|||| ||-+ |-+....+
T Consensus 53 a~~~GaDL~Hi-FCe~~A-a~vIKsYs----PdLIVHP~l~~~~av~~i~k~L~RlhavVIGPG-LGRd---p~~~k~i~ 122 (306)
T KOG3974|consen 53 ALRVGADLSHI-FCEPEA-AVVIKSYS----PDLIVHPVLDQENAVDIIEKLLQRLHAVVIGPG-LGRD---PAILKEIA 122 (306)
T ss_pred HHHhccceeee-eechhH-HHHHhhcC----CceeecccccCCchHhHHHHHHhheeEEEECCC-CCCC---HHHHHHHH
Confidence 34567886433 443322 22345553 444444444445588888888888999999997 4332 56778889
Q ss_pred HHHHHHHhcCCcEEE-------EeccccccccC-----CCcChHHHhHHHHHHH
Q 010211 356 DIIRRCRSMQKPVIV-------ATNMLESMIDH-----PTPTRAEVSDIAIAVR 397 (515)
Q Consensus 356 ~Ii~~c~~aGKPviv-------ATqmLeSMi~~-----~~PtrAEv~DvanaV~ 397 (515)
+|++-++..++|+.+ .+|-.|-|+.. .+|.--|....+.++.
T Consensus 123 ~iley~~~~dvP~VIDaDGL~Lv~q~~e~l~~~~~~viLTPNvvEFkRLcd~~l 176 (306)
T KOG3974|consen 123 KILEYLRGKDVPLVIDADGLWLVEQLPERLIGGYPKVILTPNVVEFKRLCDAEL 176 (306)
T ss_pred HHHHHHhcCCCcEEEcCCceEehhhchhhhhccCceeeeCCcHHHHHHHHHHhh
Confidence 999999999999865 34544533322 1566666666655554
No 209
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=66.45 E-value=69 Score=32.97 Aligned_cols=97 Identities=13% Similarity=0.111 Sum_probs=58.4
Q ss_pred HHhhcchhcC-CcEEEec------ccCCHHHHHHH-HHHHHhcCCCceEEEEec---ChhhhhcHHHHHhh-cCeeEEcC
Q 010211 271 EDIKFGVDNQ-VDFYAVS------FVKDAKVVHEL-KDYLKSCNADIHVIVKIE---SADSIPNLHSIISA-SDGAMVAR 338 (515)
Q Consensus 271 ~dI~~al~~g-vD~ValS------fVrsa~dv~~v-r~~l~~~~~~i~IIaKIE---t~~aveNldeIl~~-sDgImIgr 338 (515)
+.+++.++.| +|+|.+. +.=+.++-.++ +...+..+.++.|++.+- |.++++-.....+. +|++|+.+
T Consensus 25 ~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~ 104 (290)
T TIGR00683 25 QIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVT 104 (290)
T ss_pred HHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeC
Confidence 5667888999 9998764 33344444443 344555666789999985 45555555554444 89999975
Q ss_pred CcccccCCCCCHHHHHHHHHHHHHhc-CCcEEEE
Q 010211 339 GDLGAELPIEDVPLLQEDIIRRCRSM-QKPVIVA 371 (515)
Q Consensus 339 gDLg~elg~e~v~~aqk~Ii~~c~~a-GKPvivA 371 (515)
-..-. ..-+++...-+++ |.+. +.|+++.
T Consensus 105 P~y~~-~~~~~i~~yf~~v---~~~~~~lpv~lY 134 (290)
T TIGR00683 105 PFYYK-FSFPEIKHYYDTI---IAETGGLNMIVY 134 (290)
T ss_pred CcCCC-CCHHHHHHHHHHH---HhhCCCCCEEEE
Confidence 43211 1113444444444 4445 6899874
No 210
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=66.41 E-value=12 Score=40.00 Aligned_cols=48 Identities=13% Similarity=0.232 Sum_probs=41.5
Q ss_pred EEEEecCCCCCCHHHHHHHHHh--CCcEEEEecCCCChHHHHHHHHHHHH
Q 010211 102 KIVCTIGPSTSSREMIWKLAEE--GMNVARLNMSHGDHASHQKTIDLVKE 149 (515)
Q Consensus 102 KIi~TiGPss~~~e~i~~li~a--Gm~v~RiN~SHg~~e~~~~~i~~ir~ 149 (515)
.+...+|-..++.|.+++|+++ |+|+.=|..|||.-+...++|+.||+
T Consensus 98 ~~~vavG~~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~ 147 (346)
T PRK05096 98 HVMVSTGTSDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKARE 147 (346)
T ss_pred eEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHH
Confidence 3555888888999999999995 99999999999998888887777775
No 211
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=66.36 E-value=27 Score=34.48 Aligned_cols=41 Identities=12% Similarity=0.293 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecc
Q 010211 353 LQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG 407 (515)
Q Consensus 353 aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ 407 (515)
...++++.|+++|.|++= -.-+|| ++..+...|+|.+=+=-
T Consensus 85 ~~~~vi~~a~~~~i~~iP---------G~~Tpt-----Ei~~A~~~Ga~~vK~FP 125 (201)
T PRK06015 85 TTQELLAAANDSDVPLLP---------GAATPS-----EVMALREEGYTVLKFFP 125 (201)
T ss_pred CCHHHHHHHHHcCCCEeC---------CCCCHH-----HHHHHHHCCCCEEEECC
Confidence 457899999999999874 112333 46689999999988743
No 212
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=66.20 E-value=45 Score=35.35 Aligned_cols=119 Identities=17% Similarity=0.295 Sum_probs=77.4
Q ss_pred CCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEE-Eeccc--cccccCC
Q 010211 307 ADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIV-ATNML--ESMIDHP 382 (515)
Q Consensus 307 ~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPviv-ATqmL--eSMi~~~ 382 (515)
-.++|...+....-++.+.+-++. .+.||+.-. .+++++=...-+++++.|+++|..|=- -.++- |--....
T Consensus 84 ~~VPV~lHLDHg~~~e~i~~ai~~GftSVMiD~S----~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~~ 159 (321)
T PRK07084 84 CPIPIVLHLDHGDSFELCKDCIDSGFSSVMIDGS----HLPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAE 159 (321)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHcCCCEEEeeCC----CCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccCc
Confidence 367899999988777666665555 789999744 357888888999999999999988720 00010 0000000
Q ss_pred CcChHHHhHHHHHHH-hCCcEEeecccccCCCCHH--------HHHHHHHHHHHHH
Q 010211 383 TPTRAEVSDIAIAVR-EGADAVMLSGETAHGKFPL--------KAVKVMHTVALRT 429 (515)
Q Consensus 383 ~PtrAEv~DvanaV~-~G~D~vmLs~ETa~G~yPv--------eaV~~m~~I~~~a 429 (515)
.-......+...++. -|+|++..+--|+.|.|+- --...+.+|....
T Consensus 160 ~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~ 215 (321)
T PRK07084 160 HHTYTQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRI 215 (321)
T ss_pred ccccCCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhc
Confidence 000111234456665 4999999999999999963 3455666665555
No 213
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=66.13 E-value=1.1e+02 Score=31.94 Aligned_cols=97 Identities=12% Similarity=0.178 Sum_probs=58.0
Q ss_pred HHhhcchhcCCcEEEec------ccCCHHHHHH-HHHHHHhcCCCceEEEEec---ChhhhhcHHHHHhh-cCeeEEcCC
Q 010211 271 EDIKFGVDNQVDFYAVS------FVKDAKVVHE-LKDYLKSCNADIHVIVKIE---SADSIPNLHSIISA-SDGAMVARG 339 (515)
Q Consensus 271 ~dI~~al~~gvD~ValS------fVrsa~dv~~-vr~~l~~~~~~i~IIaKIE---t~~aveNldeIl~~-sDgImIgrg 339 (515)
+.+++.+++|+++|.+. +.-+.++-.+ ++...+..+.++.||+-+= |.++++....-.+. +|++|+-+-
T Consensus 33 ~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P 112 (309)
T cd00952 33 RLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRP 112 (309)
T ss_pred HHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCC
Confidence 45577788999998762 1122233323 3445555677899999884 55666666555555 899999754
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhc-CCcEEEE
Q 010211 340 DLGAELPIEDVPLLQEDIIRRCRSM-QKPVIVA 371 (515)
Q Consensus 340 DLg~elg~e~v~~aqk~Ii~~c~~a-GKPvivA 371 (515)
..-. ..-+++...-+.| |.+. +.|+++.
T Consensus 113 ~y~~-~~~~~l~~yf~~v---a~a~~~lPv~iY 141 (309)
T cd00952 113 MWLP-LDVDTAVQFYRDV---AEAVPEMAIAIY 141 (309)
T ss_pred cCCC-CCHHHHHHHHHHH---HHhCCCCcEEEE
Confidence 3211 1113444444444 5556 6999985
No 214
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=65.88 E-value=18 Score=35.72 Aligned_cols=59 Identities=19% Similarity=0.312 Sum_probs=42.9
Q ss_pred EEecCCEEEEEeec--CCCC---cceEEecccccc--cccCcCCEEEEe--CCeeEEEEEEEeCCeEE
Q 010211 180 ILKEGQEFNFTIKR--GVST---EDTVSVNYDDFV--NDVEVGDILLVD--GGMMSLAVKSKTKDLVK 238 (515)
Q Consensus 180 ~L~~G~~v~lt~~~--~~~~---~~~i~v~~~~l~--~~v~~Gd~IliD--DG~I~l~V~~~~~~~v~ 238 (515)
-+++|+++.++... .++. +....++...|. ..+++|++++.+ +|.+.++|++++++.|+
T Consensus 51 G~~~Gd~~~v~l~peeAyGe~d~~lV~~vpr~~F~~~~~l~~G~~~~~~~~~G~~~~~V~ev~~d~V~ 118 (196)
T PRK10737 51 GHEVGDKFDVAVGANDAYGQYDENLVQRVPKDVFMGVDELQVGMRFLAETDQGPVPVEITAVEDDHVV 118 (196)
T ss_pred CCCCCCEEEEEEChHHhcCCCChHHEEEecHHHCCCccCCCCCCEEEEeCCCCcEEEEEEEEcCCEEE
Confidence 46789999988762 2332 235566655663 358999999874 78899999999998853
No 215
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=65.73 E-value=1e+02 Score=29.25 Aligned_cols=102 Identities=21% Similarity=0.238 Sum_probs=57.2
Q ss_pred HHHhhcchhcCCcEEEecccC-CHHH----HHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccc
Q 010211 270 WEDIKFGVDNQVDFYAVSFVK-DAKV----VHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGA 343 (515)
Q Consensus 270 ~~dI~~al~~gvD~ValSfVr-sa~d----v~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~ 343 (515)
.+.++.+++.|+++|-+-.-. +..+ ++++++.... .++.++.. +.++...+. +|++.++-.|+.
T Consensus 24 ~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~-------~~~~~a~~~gad~vh~~~~~~~- 93 (212)
T PRK00043 24 LEVVEAALEGGVTLVQLREKGLDTRERLELARALKELCRR--YGVPLIVN-------DRVDLALAVGADGVHLGQDDLP- 93 (212)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHH--hCCeEEEe-------ChHHHHHHcCCCEEecCcccCC-
Confidence 356778888999998764221 1111 2222332222 23444442 345555555 898877533221
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 344 ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 344 elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
...++..+..++.+++++ +|..| +..+...|+|.+.++
T Consensus 94 -----------~~~~~~~~~~~~~~g~~~-----------~t~~e---~~~a~~~gaD~v~~~ 131 (212)
T PRK00043 94 -----------VADARALLGPDAIIGLST-----------HTLEE---AAAALAAGADYVGVG 131 (212)
T ss_pred -----------HHHHHHHcCCCCEEEEeC-----------CCHHH---HHHHhHcCCCEEEEC
Confidence 122344556778888754 35444 446678899999874
No 216
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=65.59 E-value=54 Score=34.18 Aligned_cols=116 Identities=17% Similarity=0.254 Sum_probs=76.7
Q ss_pred CceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEE----EEeccccccccCC
Q 010211 308 DIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVI----VATNMLESMIDHP 382 (515)
Q Consensus 308 ~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvi----vATqmLeSMi~~~ 382 (515)
.++|...+.....++.+..-++. .+-||+.-. .+++++=...-+++++.|++.|.+|= .-..--+......
T Consensus 77 ~vPV~lHLDHg~~~e~i~~ai~~GftSVM~DgS----~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~ 152 (286)
T PRK08610 77 TIPVAIHLDHGSSFEKCKEAIDAGFTSVMIDAS----HSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADG 152 (286)
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCC----CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcc
Confidence 37899999988766666555555 788999733 35788888889999999999999871 1110001100000
Q ss_pred -CcChHHHhHHHHHHH-hCCcEEeecccccCCCC---HHHHHHHHHHHHHHH
Q 010211 383 -TPTRAEVSDIAIAVR-EGADAVMLSGETAHGKF---PLKAVKVMHTVALRT 429 (515)
Q Consensus 383 -~PtrAEv~DvanaV~-~G~D~vmLs~ETa~G~y---PveaV~~m~~I~~~a 429 (515)
.=| ...+...|+. -|+|++-.+--|+.|.| |---.+.+.+|....
T Consensus 153 ~~yT--~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~ 202 (286)
T PRK08610 153 IIYA--DPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLST 202 (286)
T ss_pred cccC--CHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHH
Confidence 011 1234456775 49999999999999999 544566777776544
No 217
>PRK15447 putative protease; Provisional
Probab=65.20 E-value=37 Score=35.22 Aligned_cols=66 Identities=14% Similarity=0.042 Sum_probs=47.6
Q ss_pred cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEee
Q 010211 331 SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 405 (515)
Q Consensus 331 sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmL 405 (515)
+|+|.+|-..++.-.++ -..-.+++++.|+++||.+.++|. +......|.......+..|.|+++.
T Consensus 29 aDaVY~g~~~~~~R~~f--~~~~l~e~v~~~~~~gkkvyva~p-------~i~~~~~e~~~l~~~l~~~~~~v~v 94 (301)
T PRK15447 29 VDIVYLGETVCSKRREL--KVGDWLELAERLAAAGKEVVLSTL-------ALVEAPSELKELRRLVENGEFLVEA 94 (301)
T ss_pred CCEEEECCccCCCccCC--CHHHHHHHHHHHHHcCCEEEEEec-------ccccCHHHHHHHHHHHhcCCCEEEE
Confidence 89999996666654333 335667888889999999999762 1112245777888888888898775
No 218
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=65.19 E-value=1.1e+02 Score=32.04 Aligned_cols=92 Identities=21% Similarity=0.187 Sum_probs=51.0
Q ss_pred CCCceEEEEecChhhhhcHHHHHhh-----cCeeEE-cCC---------cccccC-CC---CCHHHHHHHHHHHHHhc--
Q 010211 306 NADIHVIVKIESADSIPNLHSIISA-----SDGAMV-ARG---------DLGAEL-PI---EDVPLLQEDIIRRCRSM-- 364 (515)
Q Consensus 306 ~~~i~IIaKIEt~~aveNldeIl~~-----sDgImI-grg---------DLg~el-g~---e~v~~aqk~Ii~~c~~a-- 364 (515)
+.++.|++|+---...+++.++++. +|+|-+ ++- .+.... |+ +.-+.+.+.+-...+..
T Consensus 200 ~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~ 279 (327)
T cd04738 200 GKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGG 279 (327)
T ss_pred ccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCC
Confidence 4468999999432222345555543 688874 321 011111 11 22334455555555555
Q ss_pred CCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccc
Q 010211 365 QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGET 409 (515)
Q Consensus 365 GKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ET 409 (515)
..|++.. .+.-|. .|+..++..|+|+||+...-
T Consensus 280 ~ipIi~~---------GGI~t~---~da~e~l~aGAd~V~vg~~~ 312 (327)
T cd04738 280 KIPIIGV---------GGISSG---EDAYEKIRAGASLVQLYTGL 312 (327)
T ss_pred CCcEEEE---------CCCCCH---HHHHHHHHcCCCHHhccHHH
Confidence 5787763 233332 36778888999999997443
No 219
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=65.04 E-value=74 Score=32.81 Aligned_cols=97 Identities=13% Similarity=0.132 Sum_probs=58.6
Q ss_pred HHhhcchhcCCcEEEecc------cCCHHHHHH-HHHHHHhcCCCceEEEEec---ChhhhhcHHHHHhh-cCeeEEcCC
Q 010211 271 EDIKFGVDNQVDFYAVSF------VKDAKVVHE-LKDYLKSCNADIHVIVKIE---SADSIPNLHSIISA-SDGAMVARG 339 (515)
Q Consensus 271 ~dI~~al~~gvD~ValSf------Vrsa~dv~~-vr~~l~~~~~~i~IIaKIE---t~~aveNldeIl~~-sDgImIgrg 339 (515)
+.++|.++.|+++|.+.= .=|.++-.+ ++...+..+.++.|++.+- |.++++......+. +|++|+.+-
T Consensus 25 ~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP 104 (294)
T TIGR02313 25 ELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVP 104 (294)
T ss_pred HHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 556788899999987531 112222222 3444555667789998885 34566665555444 899999864
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhc-CCcEEEE
Q 010211 340 DLGAELPIEDVPLLQEDIIRRCRSM-QKPVIVA 371 (515)
Q Consensus 340 DLg~elg~e~v~~aqk~Ii~~c~~a-GKPvivA 371 (515)
-.- + +.-..+....-..|.+. +.|+++.
T Consensus 105 ~y~---~-~~~~~l~~~f~~ia~a~~~lpv~iY 133 (294)
T TIGR02313 105 YYN---K-PNQEALYDHFAEVADAVPDFPIIIY 133 (294)
T ss_pred cCC---C-CCHHHHHHHHHHHHHhccCCCEEEE
Confidence 321 1 12234444455556667 7999884
No 220
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=64.86 E-value=1.8e+02 Score=30.12 Aligned_cols=166 Identities=14% Similarity=0.096 Sum_probs=90.2
Q ss_pred CceeeeCCCccCCCCCCHhhHHHhh-cchhcCCcEEEec-ccCC-----HHHHHHHHHHHHhcCCCceEEEEecChhhhh
Q 010211 250 RRHLNVRGKSANLPSITDKDWEDIK-FGVDNQVDFYAVS-FVKD-----AKVVHELKDYLKSCNADIHVIVKIESADSIP 322 (515)
Q Consensus 250 ~KgVnlpg~~~~lp~ltekD~~dI~-~al~~gvD~ValS-fVrs-----a~dv~~vr~~l~~~~~~i~IIaKIEt~~ave 322 (515)
|-|..-|+.. ++.+++..|. .-.+.|+|.|=+. |+.. ..|-.++-..+... ....+.+-+-+.++++
T Consensus 13 RDG~Q~~~~~-----~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~-~~~~~~~l~~~~~~ie 86 (287)
T PRK05692 13 RDGLQNEKRF-----IPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRR-PGVTYAALTPNLKGLE 86 (287)
T ss_pred CccccCcCCC-----cCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhcc-CCCeEEEEecCHHHHH
Confidence 3444445443 3566765554 4456799988664 5432 12222322233322 2344444443444443
Q ss_pred cHHHHHhh-cCeeEE--cCCcc----cccCCCCCHHHHHHHHHHHHHhcCCcEEEEecccccccc-CCCc---ChHHHhH
Q 010211 323 NLHSIISA-SDGAMV--ARGDL----GAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMID-HPTP---TRAEVSD 391 (515)
Q Consensus 323 NldeIl~~-sDgImI--grgDL----g~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~-~~~P---trAEv~D 391 (515)
. -++. .|.|.+ .-.|+ -.....++.....+.+++.++++|..+..+= +|.. .+.- +...+.+
T Consensus 87 ~---A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i----~~~~~~~~~~~~~~~~~~~ 159 (287)
T PRK05692 87 A---ALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYV----SCVLGCPYEGEVPPEAVAD 159 (287)
T ss_pred H---HHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEE----EEEecCCCCCCCCHHHHHH
Confidence 2 2333 454433 33332 1112235667778899999999999875211 0111 1222 2233333
Q ss_pred -HHHHHHhCCcEEeecccccCCCCHHHHHHHHHHHHHHH
Q 010211 392 -IAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRT 429 (515)
Q Consensus 392 -vanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~a 429 (515)
+-.+...|+|.+.|. +|.=-..|.+.-+.+..+.++.
T Consensus 160 ~~~~~~~~G~d~i~l~-DT~G~~~P~~v~~lv~~l~~~~ 197 (287)
T PRK05692 160 VAERLFALGCYEISLG-DTIGVGTPGQVRAVLEAVLAEF 197 (287)
T ss_pred HHHHHHHcCCcEEEec-cccCccCHHHHHHHHHHHHHhC
Confidence 345667899999985 8887778999998888887654
No 221
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=64.41 E-value=1.6e+02 Score=29.48 Aligned_cols=134 Identities=11% Similarity=0.175 Sum_probs=92.6
Q ss_pred hhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCC--CC-HHHH
Q 010211 277 VDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPI--ED-VPLL 353 (515)
Q Consensus 277 l~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~--e~-v~~a 353 (515)
.+.|++.+.+ +++-.++..++.+++++.|-...+..|=+|+ |+.++..++..|-++| .+++=|+ .+ +...
T Consensus 84 a~agas~~tf-H~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~--Ve~~~~~~~~~D~vLv----MtVePGFGGQkFme~m 156 (224)
T KOG3111|consen 84 AKAGASLFTF-HYEATQKPAELVEKIREKGMKVGLALKPGTP--VEDLEPLAEHVDMVLV----MTVEPGFGGQKFMEDM 156 (224)
T ss_pred HhcCcceEEE-EEeeccCHHHHHHHHHHcCCeeeEEeCCCCc--HHHHHHhhccccEEEE----EEecCCCchhhhHHHH
Confidence 3679998765 3566677888999999999888888888885 7777777777898887 4555555 22 4445
Q ss_pred HHHHHHHHHhcCCcEE-EEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHHHHHHHHh
Q 010211 354 QEDIIRRCRSMQKPVI-VATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTE 430 (515)
Q Consensus 354 qk~Ii~~c~~aGKPvi-vATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE 430 (515)
..++-+.-.+...+.| +- -...|.- +..+...|++++.--+-----.-|-++++.|++.+..+-
T Consensus 157 m~KV~~lR~kyp~l~ievD--------GGv~~~t-----i~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr~~v~~a~ 221 (224)
T KOG3111|consen 157 MPKVEWLREKYPNLDIEVD--------GGVGPST-----IDKAAEAGANMIVAGSAVFGAADPSDVISLLRNSVEKAA 221 (224)
T ss_pred HHHHHHHHHhCCCceEEec--------CCcCcch-----HHHHHHcCCCEEEecceeecCCCHHHHHHHHHHHHhhhh
Confidence 5666666678888888 31 1223333 335556678777654333344668899999999887664
No 222
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=63.99 E-value=1.1e+02 Score=31.24 Aligned_cols=111 Identities=16% Similarity=0.162 Sum_probs=72.2
Q ss_pred hHHHh-hcchhcCCcEEEe-----cccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcc
Q 010211 269 DWEDI-KFGVDNQVDFYAV-----SFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDL 341 (515)
Q Consensus 269 D~~dI-~~al~~gvD~Val-----SfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDL 341 (515)
|..++ +...+.|++.+.+ -|-.+.+|+..+++.. +++|+.|==-..-. .+++.... +|+|.+.-.+|
T Consensus 71 ~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v-----~iPvl~kdfi~~~~-qi~~a~~~GAD~VlLi~~~l 144 (260)
T PRK00278 71 DPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAV-----SLPVLRKDFIIDPY-QIYEARAAGADAILLIVAAL 144 (260)
T ss_pred CHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhc-----CCCEEeeeecCCHH-HHHHHHHcCCCEEEEEeccC
Confidence 44444 3345679998876 5668889998888764 46666531011111 24444444 89999875555
Q ss_pred cccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecc
Q 010211 342 GAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG 407 (515)
Q Consensus 342 g~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ 407 (515)
. +...+++++.|+..|.-+++-+ -+.+|+ ..+...|+|.+.+++
T Consensus 145 ~--------~~~l~~li~~a~~lGl~~lvev-----------h~~~E~---~~A~~~gadiIgin~ 188 (260)
T PRK00278 145 D--------DEQLKELLDYAHSLGLDVLVEV-----------HDEEEL---ERALKLGAPLIGINN 188 (260)
T ss_pred C--------HHHHHHHHHHHHHcCCeEEEEe-----------CCHHHH---HHHHHcCCCEEEECC
Confidence 3 2477889999999999988743 233443 456778999988764
No 223
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=63.88 E-value=1.3e+02 Score=32.02 Aligned_cols=149 Identities=17% Similarity=0.141 Sum_probs=92.1
Q ss_pred HhhHHHhhcchhc--CCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-----c--CeeEEc
Q 010211 267 DKDWEDIKFGVDN--QVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-----S--DGAMVA 337 (515)
Q Consensus 267 ekD~~dI~~al~~--gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-----s--DgImIg 337 (515)
++|.+-|+.+++. |-..+.-| -+.+++..+-....+.|. .+++. ++.-++-+.++... . +-|++.
T Consensus 136 ~kD~evleaale~~~g~~pLInS--at~en~~~i~~lA~~y~~--~Vva~--s~~Dln~ak~L~~~l~~~Gi~~edIviD 209 (319)
T PRK04452 136 EKDAEVLEKVAEAAEGERCLLGS--AEEDNYKKIAAAAMAYGH--AVIAW--SPLDINLAKQLNILLTELGVPRERIVMD 209 (319)
T ss_pred CCCHHHHHHHHHHhCCCCCEEEE--CCHHHHHHHHHHHHHhCC--eEEEE--cHHHHHHHHHHHHHHHHcCCCHHHEEEe
Confidence 4688888777653 33445444 346677777666655443 44444 23334444444432 3 667889
Q ss_pred CCcccccCCCCCHHHHHHHHHHHHHh----cCCcEEEEecc-----ccccc------cC-CCcChH---HHhHHHHHHHh
Q 010211 338 RGDLGAELPIEDVPLLQEDIIRRCRS----MQKPVIVATNM-----LESMI------DH-PTPTRA---EVSDIAIAVRE 398 (515)
Q Consensus 338 rgDLg~elg~e~v~~aqk~Ii~~c~~----aGKPvivATqm-----LeSMi------~~-~~PtrA---Ev~DvanaV~~ 398 (515)
|+=.++.+|.+.....+.+|=..+-+ .|-|+|..+-. =|+.. .- ++-.|+ |+.-...++..
T Consensus 210 P~~~~lg~g~e~~~~~~e~IR~aAl~~d~~l~~P~i~~~~~~~~~~kea~~~~~~~~~~g~~~~r~~~~E~~~a~~~~~~ 289 (319)
T PRK04452 210 PTTGALGYGIEYSYSVMERIRLAALKGDEMLQMPMISGVGFEAWKAKEAWMPEEEDPEWGPREYRGILWEAVTALTLLLA 289 (319)
T ss_pred CCcccccCCHHHHHHHHHHHHHHHhcCCCcCCCCeEecchhhhhhccccccccccccccccchhccHHHHHHHHHHHHHh
Confidence 99888888888877777777777765 45576553310 01111 00 001122 66667888899
Q ss_pred CCcEEeecccccCCCCHHHHHHHHHHHHHHH
Q 010211 399 GADAVMLSGETAHGKFPLKAVKVMHTVALRT 429 (515)
Q Consensus 399 G~D~vmLs~ETa~G~yPveaV~~m~~I~~~a 429 (515)
|+|.++|. || ++|++++++....
T Consensus 290 ga~i~vm~-------hp-~s~~~~~~~~~~l 312 (319)
T PRK04452 290 GADIFMMR-------HP-ESVKTLKEIIDTL 312 (319)
T ss_pred cCcEEEEe-------CH-HHHHHHHHHHHHH
Confidence 99999994 88 8999999887654
No 224
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=63.82 E-value=97 Score=32.37 Aligned_cols=115 Identities=18% Similarity=0.269 Sum_probs=75.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHh-cCC
Q 010211 289 VKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRS-MQK 366 (515)
Q Consensus 289 Vrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~-aGK 366 (515)
.++++||+++++.+ +++||.++---- +...+++.+. +|.| | ..+-.-+ ..+++...+. .+.
T Consensus 51 ~~~~~~I~~Ik~~V-----~iPVIGi~K~~~-~~Ea~~L~eaGvDiI-----D-aT~r~rP-----~~~~~~~iK~~~~~ 113 (283)
T cd04727 51 MADPKMIKEIMDAV-----SIPVMAKVRIGH-FVEAQILEALGVDMI-----D-ESEVLTP-----ADEEHHIDKHKFKV 113 (283)
T ss_pred cCCHHHHHHHHHhC-----CCCeEEeeehhH-HHHHHHHHHcCCCEE-----e-ccCCCCc-----HHHHHHHHHHHcCC
Confidence 35666666666654 688888764322 6666777766 7877 4 2222222 2444444444 377
Q ss_pred cEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHHHHHHHHhcCCCC
Q 010211 367 PVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 435 (515)
Q Consensus 367 PvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 435 (515)
|++. ..-| +.++-+++..|+|++=-+.+.--| +-.|+|+-+++|-.++.....|
T Consensus 114 l~MA-----------D~st---leEal~a~~~Gad~I~TTl~gyT~-~~~~~~~~~~~i~~~i~~~~gy 167 (283)
T cd04727 114 PFVC-----------GARN---LGEALRRISEGAAMIRTKGEAGTG-NVVEAVRHMRAVNGEIRKLQSM 167 (283)
T ss_pred cEEc-----------cCCC---HHHHHHHHHCCCCEEEecCCCCCC-cHHHHHHHHHHHHHHHHHHhCC
Confidence 7765 2222 556779999999999877775555 6789999999999988865444
No 225
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=63.78 E-value=69 Score=33.39 Aligned_cols=119 Identities=14% Similarity=0.235 Sum_probs=78.2
Q ss_pred CCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEE----EEeccccccccC
Q 010211 307 ADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVI----VATNMLESMIDH 381 (515)
Q Consensus 307 ~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvi----vATqmLeSMi~~ 381 (515)
..++|...+.....++.+.+-+.. .+.||+... .+++++=...-+++++.|+++|..|= .-..-=+.....
T Consensus 73 ~~VPValHLDHg~~~e~i~~ai~~GFtSVM~DgS----~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~ 148 (286)
T PRK12738 73 YNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGS----HFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVD 148 (286)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCeEeecCC----CCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccc
Confidence 368899999998877766665555 789999743 46788888899999999999999872 110000000000
Q ss_pred CCc-ChHHHhHHHHHHH-hCCcEEeecccccCCCCHH---HHHHHHHHHHHHH
Q 010211 382 PTP-TRAEVSDIAIAVR-EGADAVMLSGETAHGKFPL---KAVKVMHTVALRT 429 (515)
Q Consensus 382 ~~P-trAEv~DvanaV~-~G~D~vmLs~ETa~G~yPv---eaV~~m~~I~~~a 429 (515)
... ......+...++. -|+|++-.+--|+.|.|+- --...+.+|....
T Consensus 149 ~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~ 201 (286)
T PRK12738 149 AESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVV 201 (286)
T ss_pred cchhcCCCHHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHh
Confidence 000 0011234457775 4999999999999999963 3455666665554
No 226
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=63.72 E-value=1.4e+02 Score=28.53 Aligned_cols=121 Identities=15% Similarity=0.120 Sum_probs=66.3
Q ss_pred CCCHhhHHHhhcchhcCCcEEEec--ccCCHHHHHHHHHHHHhcCCCceEEE--EecChhhhhcHHHHHhh-cCeeEEcC
Q 010211 264 SITDKDWEDIKFGVDNQVDFYAVS--FVKDAKVVHELKDYLKSCNADIHVIV--KIESADSIPNLHSIISA-SDGAMVAR 338 (515)
Q Consensus 264 ~ltekD~~dI~~al~~gvD~ValS--fVrsa~dv~~vr~~l~~~~~~i~IIa--KIEt~~aveNldeIl~~-sDgImIgr 338 (515)
..+.++...+..+++.|+|+|=+. + ..+.....++++-+... +..+++ |+-++... .+++..+. +|.|.+--
T Consensus 8 ~~~~~~a~~~~~~l~~~v~~iev~~~l-~~~~g~~~i~~l~~~~~-~~~i~~d~k~~d~~~~-~~~~~~~~Gad~i~vh~ 84 (206)
T TIGR03128 8 LLDIEEALELAEKVADYVDIIEIGTPL-IKNEGIEAVKEMKEAFP-DRKVLADLKTMDAGEY-EAEQAFAAGADIVTVLG 84 (206)
T ss_pred CCCHHHHHHHHHHcccCeeEEEeCCHH-HHHhCHHHHHHHHHHCC-CCEEEEEEeeccchHH-HHHHHHHcCCCEEEEec
Confidence 344556655655668899988773 3 22222333433332222 233443 34444322 45665555 88887641
Q ss_pred CcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 339 GDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 339 gDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
+.+ ....+++++.|+++|++++.+- .+ |.. -..++..+...|+|.+.+.
T Consensus 85 -----~~~----~~~~~~~i~~~~~~g~~~~~~~-------~~--~~t-~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 85 -----VAD----DATIKGAVKAAKKHGKEVQVDL-------IN--VKD-KVKRAKELKELGADYIGVH 133 (206)
T ss_pred -----cCC----HHHHHHHHHHHHHcCCEEEEEe-------cC--CCC-hHHHHHHHHHcCCCEEEEc
Confidence 111 2345789999999999999841 11 211 1233445666699998774
No 227
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=63.36 E-value=15 Score=39.17 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=42.1
Q ss_pred EEEEecCCCCCCHHHHHHHHHhC--CcEEEEecCCCChHHHHHHHHHHHH
Q 010211 102 KIVCTIGPSTSSREMIWKLAEEG--MNVARLNMSHGDHASHQKTIDLVKE 149 (515)
Q Consensus 102 KIi~TiGPss~~~e~i~~li~aG--m~v~RiN~SHg~~e~~~~~i~~ir~ 149 (515)
.+.+.+|-..++.|.+++|+++| .|+.=|.-|||.-+...++|+.||+
T Consensus 97 ~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~ 146 (343)
T TIGR01305 97 NVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVRE 146 (343)
T ss_pred eEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHh
Confidence 35558899999999999999996 9999999999999888888888775
No 228
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=63.26 E-value=75 Score=33.99 Aligned_cols=129 Identities=13% Similarity=0.053 Sum_probs=72.1
Q ss_pred cchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh----cCeeEEcCCcccccCCCCCH
Q 010211 275 FGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLGAELPIEDV 350 (515)
Q Consensus 275 ~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~----sDgImIgrgDLg~elg~e~v 350 (515)
.|...|+|+|-++.- --.+...+.++ +.+..|-+-+- |++++... +|.|.+||---+.+=+-..
T Consensus 212 lAl~~~aDGVHLgq~--dl~~~~aR~ll---g~~~iIG~S~H------s~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~- 279 (347)
T PRK02615 212 IALAVDADGVHLGQE--DLPLAVARQLL---GPEKIIGRSTT------NPEEMAKAIAEGADYIGVGPVFPTPTKPGKA- 279 (347)
T ss_pred HHHHcCCCEEEeChh--hcCHHHHHHhc---CCCCEEEEecC------CHHHHHHHHHcCCCEEEECCCcCCCCCCCCC-
Confidence 345668898877631 11134445544 34444444333 44454443 8999999754432211100
Q ss_pred HHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHHHHHHH
Q 010211 351 PLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALR 428 (515)
Q Consensus 351 ~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~ 428 (515)
+.-.+.+-+.+.....|++.- .+. +.. ++......|+|+|.+.+.-....-|.++++.+.+...+
T Consensus 280 ~~Gle~l~~~~~~~~iPv~Ai---------GGI-~~~---ni~~l~~~Ga~gVAvisaI~~a~dp~~~~~~l~~~l~~ 344 (347)
T PRK02615 280 PAGLEYLKYAAKEAPIPWFAI---------GGI-DKS---NIPEVLQAGAKRVAVVRAIMGAEDPKQATQELLKQLSR 344 (347)
T ss_pred CCCHHHHHHHHHhCCCCEEEE---------CCC-CHH---HHHHHHHcCCcEEEEeHHHhCCCCHHHHHHHHHHHHhc
Confidence 111122223344567898762 222 222 33455677999999887766667799999888776544
No 229
>TIGR03586 PseI pseudaminic acid synthase.
Probab=63.23 E-value=1.2e+02 Score=32.21 Aligned_cols=67 Identities=24% Similarity=0.274 Sum_probs=44.9
Q ss_pred hhcHHHHHhh-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHH-h
Q 010211 321 IPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVR-E 398 (515)
Q Consensus 321 veNldeIl~~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~-~ 398 (515)
.+.+|.+... +|.+=||-+|+.- -.+++++.+.||||++.| +..|..|+...+.++. .
T Consensus 100 ~~svd~l~~~~v~~~KI~S~~~~n-----------~~LL~~va~~gkPvilst---------G~~t~~Ei~~Av~~i~~~ 159 (327)
T TIGR03586 100 ETAVDFLESLDVPAYKIASFEITD-----------LPLIRYVAKTGKPIIMST---------GIATLEEIQEAVEACREA 159 (327)
T ss_pred HHHHHHHHHcCCCEEEECCccccC-----------HHHHHHHHhcCCcEEEEC---------CCCCHHHHHHHHHHHHHC
Confidence 3334555555 7888888888732 124555667899999966 4567889888888886 4
Q ss_pred CC-cEEeecc
Q 010211 399 GA-DAVMLSG 407 (515)
Q Consensus 399 G~-D~vmLs~ 407 (515)
|. +.++|=.
T Consensus 160 g~~~i~LlhC 169 (327)
T TIGR03586 160 GCKDLVLLKC 169 (327)
T ss_pred CCCcEEEEec
Confidence 66 4555543
No 230
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=63.12 E-value=1.3e+02 Score=29.95 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=29.2
Q ss_pred HHhhcchhcCCcEEEecccC----------CHHHHHHHHHHHHhcCCCce
Q 010211 271 EDIKFGVDNQVDFYAVSFVK----------DAKVVHELKDYLKSCNADIH 310 (515)
Q Consensus 271 ~dI~~al~~gvD~ValSfVr----------sa~dv~~vr~~l~~~~~~i~ 310 (515)
+.++.+.+.|.|+|-++.-. +.+++..+++.+++.|-.+.
T Consensus 25 e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~ 74 (283)
T PRK13209 25 EKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVN 74 (283)
T ss_pred HHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCcee
Confidence 45667778999999886422 56778888998887766543
No 231
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=63.02 E-value=63 Score=34.68 Aligned_cols=89 Identities=16% Similarity=0.236 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEe
Q 010211 293 KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVAT 372 (515)
Q Consensus 293 ~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivAT 372 (515)
+....++++.++. .+.+++-+-..+.+ +.+.+++|.+-||-+++.- -.+++.+.+.||||++.|
T Consensus 169 e~l~~L~~~~~~~--Gl~~~t~v~d~~~~---~~l~~~vd~lkI~s~~~~n-----------~~LL~~~a~~gkPVilk~ 232 (360)
T PRK12595 169 EGLKILKQVADEY--GLAVISEIVNPADV---EVALDYVDVIQIGARNMQN-----------FELLKAAGRVNKPVLLKR 232 (360)
T ss_pred HHHHHHHHHHHHc--CCCEEEeeCCHHHH---HHHHHhCCeEEECcccccC-----------HHHHHHHHccCCcEEEeC
Confidence 5566677776554 46778877766665 4455559999999777643 256777788999999954
Q ss_pred ccccccccCCC-cChHHHhHHHHHHH-hCCcEEeec
Q 010211 373 NMLESMIDHPT-PTRAEVSDIAIAVR-EGADAVMLS 406 (515)
Q Consensus 373 qmLeSMi~~~~-PtrAEv~DvanaV~-~G~D~vmLs 406 (515)
+. +|-.|+...++.+. .|.+-++|.
T Consensus 233 ---------G~~~t~~e~~~Ave~i~~~Gn~~i~L~ 259 (360)
T PRK12595 233 ---------GLSATIEEFIYAAEYIMSQGNGQIILC 259 (360)
T ss_pred ---------CCCCCHHHHHHHHHHHHHCCCCCEEEE
Confidence 54 67788888887776 466555554
No 232
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=62.76 E-value=13 Score=39.39 Aligned_cols=45 Identities=22% Similarity=0.440 Sum_probs=37.7
Q ss_pred EecCCCCCCHHHHHHHHHhCC--cEEEEecCCCChHHHHHHHHHHHH
Q 010211 105 CTIGPSTSSREMIWKLAEEGM--NVARLNMSHGDHASHQKTIDLVKE 149 (515)
Q Consensus 105 ~TiGPss~~~e~i~~li~aGm--~v~RiN~SHg~~e~~~~~i~~ir~ 149 (515)
+.+|...++.+.+.+|+++|+ |+.=|..+||.-+..+++|+.||+
T Consensus 90 ~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~ 136 (326)
T PRK05458 90 ISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKK 136 (326)
T ss_pred EEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHh
Confidence 345555577789999999966 999999999998988888888875
No 233
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=62.38 E-value=1.4e+02 Score=29.58 Aligned_cols=121 Identities=9% Similarity=0.058 Sum_probs=71.9
Q ss_pred HHhhcchhcCCcEEEeccc--------CCHHHHHHHHHHHHhcCCCceEEEE--------e------cChhhhhcHHHHH
Q 010211 271 EDIKFGVDNQVDFYAVSFV--------KDAKVVHELKDYLKSCNADIHVIVK--------I------ESADSIPNLHSII 328 (515)
Q Consensus 271 ~dI~~al~~gvD~ValSfV--------rsa~dv~~vr~~l~~~~~~i~IIaK--------I------Et~~aveNldeIl 328 (515)
+.++.+.+.|.++|-+.+- -+..++.++++.+++.|-.+..+.- + +..++++.+...+
T Consensus 17 ~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i 96 (275)
T PRK09856 17 HAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAM 96 (275)
T ss_pred HHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHHHHH
Confidence 5667777889998887421 2235678888888877655433211 1 1123445555444
Q ss_pred hh-----cCeeEEcCCcccccCCC----CCHHHHHHHHHHHHHhcCCcEEEEeccccccc---cCCCcChHHHhHHHHHH
Q 010211 329 SA-----SDGAMVARGDLGAELPI----EDVPLLQEDIIRRCRSMQKPVIVATNMLESMI---DHPTPTRAEVSDIAIAV 396 (515)
Q Consensus 329 ~~-----sDgImIgrgDLg~elg~----e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi---~~~~PtrAEv~DvanaV 396 (515)
+. +..|.+.++..+..-.. +.+....+++.+.|.++|..+.+ |.|. .+..++.++..+..+.+
T Consensus 97 ~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~i-----E~~~~~~~~~~~t~~~~~~l~~~~ 171 (275)
T PRK09856 97 DMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLIL-----EPLTPYESNVVCNANDVLHALALV 171 (275)
T ss_pred HHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEE-----ecCCCCcccccCCHHHHHHHHHHc
Confidence 44 68888887755432111 34566778889999999987765 3321 12244566666665554
No 234
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=62.29 E-value=47 Score=33.90 Aligned_cols=81 Identities=31% Similarity=0.366 Sum_probs=52.3
Q ss_pred cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeeccccc
Q 010211 331 SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETA 410 (515)
Q Consensus 331 sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa 410 (515)
+..+|---.-.|-..|+.. +...+.|++. ...|||+ ..+.-+. +|++.++..|+|+|+++.--|
T Consensus 145 caavMPlgsPIGSg~Gi~n-~~~l~~i~~~---~~vPvIv---------DAGiG~p---Sdaa~AMElG~daVLvNTAiA 208 (247)
T PF05690_consen 145 CAAVMPLGSPIGSGRGIQN-PYNLRIIIER---ADVPVIV---------DAGIGTP---SDAAQAMELGADAVLVNTAIA 208 (247)
T ss_dssp -SEBEEBSSSTTT---SST-HHHHHHHHHH---GSSSBEE---------ES---SH---HHHHHHHHTT-SEEEESHHHH
T ss_pred CCEEEecccccccCcCCCC-HHHHHHHHHh---cCCcEEE---------eCCCCCH---HHHHHHHHcCCceeehhhHHh
Confidence 5677765555555566544 4555666544 4999998 3444443 467799999999999999989
Q ss_pred CCCCHHHHHHHHHHHHH
Q 010211 411 HGKFPLKAVKVMHTVAL 427 (515)
Q Consensus 411 ~G~yPveaV~~m~~I~~ 427 (515)
..+.|+.-.+-|+.-++
T Consensus 209 ~A~dPv~MA~Af~~AV~ 225 (247)
T PF05690_consen 209 KAKDPVAMARAFKLAVE 225 (247)
T ss_dssp TSSSHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 99999887777765443
No 235
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=62.19 E-value=14 Score=40.36 Aligned_cols=50 Identities=12% Similarity=0.247 Sum_probs=41.7
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHH
Q 010211 100 KTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKE 149 (515)
Q Consensus 100 ~TKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~ 149 (515)
+-..-+.+|+.-++.+.++.|+++|+|+.=|..+||..+...++++.+|+
T Consensus 141 ~l~v~aavg~~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~ 190 (404)
T PRK06843 141 KLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKT 190 (404)
T ss_pred CeEEEEEEeCCHHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHh
Confidence 34567778887677899999999999999999999988777777777775
No 236
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=62.15 E-value=1.1e+02 Score=30.96 Aligned_cols=57 Identities=21% Similarity=0.288 Sum_probs=41.3
Q ss_pred cCCcEEEEeccccccccCCCc-ChHH-HhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHHHHHHH
Q 010211 364 MQKPVIVATNMLESMIDHPTP-TRAE-VSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALR 428 (515)
Q Consensus 364 aGKPvivATqmLeSMi~~~~P-trAE-v~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~ 428 (515)
..+||..+. .... +..+ ...+..++..|++++......-....|.+.++.+..++.+
T Consensus 195 ~~ipV~a~G--------Gi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~p~~~~~~l~~~v~~ 253 (267)
T PRK07226 195 CPVPVVIAG--------GPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHEDPEAITRAISAVVHE 253 (267)
T ss_pred CCCCEEEEe--------CCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCCHHHHHHHHHHHHhC
Confidence 468987642 2232 3333 5556677899999999888888888899999999888643
No 237
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=62.01 E-value=2.2e+02 Score=30.20 Aligned_cols=147 Identities=13% Similarity=0.075 Sum_probs=86.8
Q ss_pred CCHhhHHHhhcc-hhcCCcEEEe---------ccc---CCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHH---H
Q 010211 265 ITDKDWEDIKFG-VDNQVDFYAV---------SFV---KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSI---I 328 (515)
Q Consensus 265 ltekD~~dI~~a-l~~gvD~Val---------SfV---rsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeI---l 328 (515)
++..++..+..+ .+.|+|.|=+ ||. ....+...++..... -.+..+.+.+- -+..+++++ .
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~-~~~~~~~~ll~--pg~~~~~dl~~a~ 98 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEV-VKQAKIAALLL--PGIGTVDDLKMAY 98 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHh-CCCCEEEEEec--cCcccHHHHHHHH
Confidence 356677666444 4579998866 332 111233344444333 23455555442 122233333 3
Q ss_pred hh-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHH-HHhCCcEEeec
Q 010211 329 SA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIA-VREGADAVMLS 406 (515)
Q Consensus 329 ~~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~Dvana-V~~G~D~vmLs 406 (515)
+. +|.|-|+ ....+. ...++.++.++++|.-|.+. +.. ....+.+++.+.+.. ...|+|++-+.
T Consensus 99 ~~gvd~iri~-------~~~~e~-~~~~~~i~~ak~~G~~v~~~--l~~----a~~~~~e~l~~~a~~~~~~Ga~~i~i~ 164 (337)
T PRK08195 99 DAGVRVVRVA-------THCTEA-DVSEQHIGLARELGMDTVGF--LMM----SHMAPPEKLAEQAKLMESYGAQCVYVV 164 (337)
T ss_pred HcCCCEEEEE-------EecchH-HHHHHHHHHHHHCCCeEEEE--EEe----ccCCCHHHHHHHHHHHHhCCCCEEEeC
Confidence 33 6877765 122233 34688999999999887653 222 234566676666554 55699998885
Q ss_pred ccccCCCCHHHHHHHHHHHHHHH
Q 010211 407 GETAHGKFPLKAVKVMHTVALRT 429 (515)
Q Consensus 407 ~ETa~G~yPveaV~~m~~I~~~a 429 (515)
+|+=..+|-+.-+....+-.+.
T Consensus 165 -DT~G~~~P~~v~~~v~~l~~~l 186 (337)
T PRK08195 165 -DSAGALLPEDVRDRVRALRAAL 186 (337)
T ss_pred -CCCCCCCHHHHHHHHHHHHHhc
Confidence 8888889988877777776655
No 238
>PRK15447 putative protease; Provisional
Probab=61.83 E-value=41 Score=34.94 Aligned_cols=116 Identities=17% Similarity=0.177 Sum_probs=70.9
Q ss_pred hHHHhhcch-hcCCcEEEecccC-------CHHHHHHHHHHHHhcCCCceE-EEEe-cChhhhhcHHHHHhh-cCeeEEc
Q 010211 269 DWEDIKFGV-DNQVDFYAVSFVK-------DAKVVHELKDYLKSCNADIHV-IVKI-ESADSIPNLHSIISA-SDGAMVA 337 (515)
Q Consensus 269 D~~dI~~al-~~gvD~ValSfVr-------sa~dv~~vr~~l~~~~~~i~I-IaKI-Et~~aveNldeIl~~-sDgImIg 337 (515)
..+++-.++ +.|+|.|-++... +.+++.++.+++.++|.++.+ +..| ...+-++.+.++++. .|+|+++
T Consensus 16 ~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~v~v~ 95 (301)
T PRK15447 16 TVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENGEFLVEAN 95 (301)
T ss_pred CHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcCCCEEEEe
Confidence 456665555 5699988886321 558888888888888888776 3365 456666777777776 5777773
Q ss_pred CCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeeccccc
Q 010211 338 RGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETA 410 (515)
Q Consensus 338 rgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa 410 (515)
|+ | .+.. +++.|.|+...|||== .| ... +.-+-..|++.+.||-|-.
T Consensus 96 --d~----g--~l~~--------~~e~~~~l~~d~~lni---~N-----~~a--~~~l~~~G~~rv~ls~ELs 142 (301)
T PRK15447 96 --DL----G--AVRL--------LAERGLPFVAGPALNC---YN-----AAT--LALLARLGATRWCMPVELS 142 (301)
T ss_pred --CH----H--HHHH--------HHhcCCCEEEeccccc---CC-----HHH--HHHHHHcCCcEEEECCcCC
Confidence 33 2 1222 2234899988876410 11 111 1123345788888886644
No 239
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=61.65 E-value=74 Score=33.57 Aligned_cols=118 Identities=14% Similarity=0.187 Sum_probs=79.2
Q ss_pred CceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEE-Eeccc---cccccCC
Q 010211 308 DIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIV-ATNML---ESMIDHP 382 (515)
Q Consensus 308 ~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPviv-ATqmL---eSMi~~~ 382 (515)
.++|...+....-++.+.+-+.. .+-||+. |-.+++++=...-+++++.|+++|..|=. -.++- +......
T Consensus 74 ~VPValHLDHg~~~e~i~~ai~~GftSVM~D----gS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~ 149 (307)
T PRK05835 74 HIPVALHLDHGTTFESCEKAVKAGFTSVMID----ASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDE 149 (307)
T ss_pred CCeEEEECCCCCCHHHHHHHHHcCCCEEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCccccc
Confidence 48899999998877666665555 7899997 33568888888899999999999998711 00110 1100000
Q ss_pred -CcChHHHhHHHHHHHh-CCcEEeecccccCCCCH-----HHHHHHHHHHHHHH
Q 010211 383 -TPTRAEVSDIAIAVRE-GADAVMLSGETAHGKFP-----LKAVKVMHTVALRT 429 (515)
Q Consensus 383 -~PtrAEv~DvanaV~~-G~D~vmLs~ETa~G~yP-----veaV~~m~~I~~~a 429 (515)
.-......+...|+.. |+|++-.+--|+.|.|+ ---...|.+|....
T Consensus 150 ~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~ 203 (307)
T PRK05835 150 KDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLT 203 (307)
T ss_pred ccccCCCHHHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHh
Confidence 0001113345577764 99999999999999995 35566777775554
No 240
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=61.61 E-value=2.4e+02 Score=30.45 Aligned_cols=142 Identities=18% Similarity=0.221 Sum_probs=94.7
Q ss_pred hhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecCh--hhhhcHHHHHhhcCeeEEcCCcccccCCCCCH
Q 010211 273 IKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESA--DSIPNLHSIISASDGAMVARGDLGAELPIEDV 350 (515)
Q Consensus 273 I~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~--~aveNldeIl~~sDgImIgrgDLg~elg~e~v 350 (515)
|+.--+.|+|.|-++ |.+.++...+++.-++. ++++++-|-=- -++ +.+-.-+|.+=|-||..|-. +
T Consensus 42 I~~L~~aG~dIVRvt-v~~~e~A~A~~~Ik~~~--~vPLVaDiHf~~rla~---~~~~~g~~k~RINPGNig~~----~- 110 (361)
T COG0821 42 IKALERAGCDIVRVT-VPDMEAAEALKEIKQRL--NVPLVADIHFDYRLAL---EAAECGVDKVRINPGNIGFK----D- 110 (361)
T ss_pred HHHHHHcCCCEEEEe-cCCHHHHHHHHHHHHhC--CCCEEEEeeccHHHHH---HhhhcCcceEEECCcccCcH----H-
Confidence 333345799998887 77888877777665543 78999977432 222 22222289999999987543 3
Q ss_pred HHHHHHHHHHHHhcCCcE--EEEecccccccc--CCCcChHH-----HhHHHHHHHhCCcEEeecccccCCCCHHHHHHH
Q 010211 351 PLLQEDIIRRCRSMQKPV--IVATNMLESMID--HPTPTRAE-----VSDIAIAVREGADAVMLSGETAHGKFPLKAVKV 421 (515)
Q Consensus 351 ~~aqk~Ii~~c~~aGKPv--ivATqmLeSMi~--~~~PtrAE-----v~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~ 421 (515)
-.+.++++|++.|||+ ++-..=||-... -..||+.. +..+.-+-..|++=+.+| .+..-|.++|+.
T Consensus 111 --~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky~~pt~ealveSAl~~a~~~e~l~f~~i~iS---~K~Sdv~~~v~a 185 (361)
T COG0821 111 --RVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKYGGPTPEALVESALEHAELLEELGFDDIKVS---VKASDVQLMVAA 185 (361)
T ss_pred --HHHHHHHHHHHcCCCEEEecccCchhHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCCCcEEEE---EEcCCHHHHHHH
Confidence 5688999999999998 443333333221 22555544 333445566788888887 566778888888
Q ss_pred HHHHHHHHh
Q 010211 422 MHTVALRTE 430 (515)
Q Consensus 422 m~~I~~~aE 430 (515)
-+.++.+.+
T Consensus 186 Yr~lA~~~d 194 (361)
T COG0821 186 YRLLAKRCD 194 (361)
T ss_pred HHHHHHhcC
Confidence 888888777
No 241
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=61.41 E-value=1.1e+02 Score=32.09 Aligned_cols=113 Identities=18% Similarity=0.263 Sum_probs=73.3
Q ss_pred ccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHh-cC
Q 010211 288 FVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRS-MQ 365 (515)
Q Consensus 288 fVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~-aG 365 (515)
-..++++|+++++.+ +++||+|+---- +...+.+.+. +|.| | ..+..-+ -.+.+...+. .+
T Consensus 52 R~~~p~~I~~I~~~V-----~iPVig~~kigh-~~Ea~~L~~~GvDiI-----D-eTe~lrP-----ade~~~~~K~~f~ 114 (287)
T TIGR00343 52 RMSDPKMIKEIMDAV-----SIPVMAKVRIGH-FVEAQILEALGVDYI-----D-ESEVLTP-----ADWTFHIDKKKFK 114 (287)
T ss_pred ecCCHHHHHHHHHhC-----CCCEEEEeeccH-HHHHHHHHHcCCCEE-----E-ccCCCCc-----HHHHHHHHHHHcC
Confidence 345666666666654 688988764222 5555555555 7877 4 2222222 1333333333 47
Q ss_pred CcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHHHHHHHHhcC
Q 010211 366 KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESS 432 (515)
Q Consensus 366 KPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~ 432 (515)
.|+.+- .-+ +.+.-+++..|+|++--++|---| +-+|||+-|+.+-.+....
T Consensus 115 vpfmad-----------~~~---l~EAlrai~~GadmI~Tt~e~gTg-~v~~av~hlr~~~~~~~~~ 166 (287)
T TIGR00343 115 VPFVCG-----------ARD---LGEALRRINEGAAMIRTKGEAGTG-NIVEAVRHMRKINEEIRQI 166 (287)
T ss_pred CCEEcc-----------CCC---HHHHHHHHHCCCCEEeccccCCCc-cHHHHHHHHHHHHHHHHHH
Confidence 887662 222 455678999999999999886677 6799999999998888754
No 242
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=61.35 E-value=56 Score=33.28 Aligned_cols=97 Identities=18% Similarity=0.157 Sum_probs=57.3
Q ss_pred HHHHHhh-cCeeEEc-CCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHH-HhHHHHHHHhCC
Q 010211 324 LHSIISA-SDGAMVA-RGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE-VSDIAIAVREGA 400 (515)
Q Consensus 324 ldeIl~~-sDgImIg-rgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAE-v~DvanaV~~G~ 400 (515)
++..++. +||+++. -.--+..|..++-..+.+.+++.++ -..||+..+ ...+-.| +...-.+-..|+
T Consensus 25 i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~-~~~~vi~gv---------~~~s~~~~i~~a~~a~~~Ga 94 (285)
T TIGR00674 25 IDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVN-GRVPVIAGT---------GSNATEEAISLTKFAEDVGA 94 (285)
T ss_pred HHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEeC---------CCccHHHHHHHHHHHHHcCC
Confidence 3444444 8999984 2111223333444455555555542 236777632 3333334 555666778899
Q ss_pred cEEeecccccCCCCHHHHHHHHHHHHHHHh
Q 010211 401 DAVMLSGETAHGKFPLKAVKVMHTVALRTE 430 (515)
Q Consensus 401 D~vmLs~ETa~G~yPveaV~~m~~I~~~aE 430 (515)
|++|+..=.-...-+-+.++....|+..++
T Consensus 95 d~v~v~pP~y~~~~~~~i~~~~~~i~~~~~ 124 (285)
T TIGR00674 95 DGFLVVTPYYNKPTQEGLYQHFKAIAEEVD 124 (285)
T ss_pred CEEEEcCCcCCCCCHHHHHHHHHHHHhcCC
Confidence 999997554443345677889999988775
No 243
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=60.95 E-value=26 Score=35.99 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=43.8
Q ss_pred hHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhh--hcHHHHHhh-cCeeEEcC
Q 010211 269 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSI--PNLHSIISA-SDGAMVAR 338 (515)
Q Consensus 269 D~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~av--eNldeIl~~-sDgImIgr 338 (515)
..+++..+.+.|+|+|.+..+ .++++.++.+.+.....+++++| --|+ +|+.++++. +|+|.++.
T Consensus 192 t~eea~~A~~~gaD~I~ld~~-~p~~l~~~~~~~~~~~~~i~i~A----sGGI~~~ni~~~~~~Gvd~I~vsa 259 (272)
T cd01573 192 SLEEALAAAEAGADILQLDKF-SPEELAELVPKLRSLAPPVLLAA----AGGINIENAAAYAAAGADILVTSA 259 (272)
T ss_pred CHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHhccCCCceEEE----ECCCCHHHHHHHHHcCCcEEEECh
Confidence 345666677899999999755 45677666666654333454443 3334 788888888 99997763
No 244
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=60.45 E-value=96 Score=30.71 Aligned_cols=101 Identities=18% Similarity=0.272 Sum_probs=60.2
Q ss_pred hcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCCHHH
Q 010211 274 KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPL 352 (515)
Q Consensus 274 ~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e~v~~ 352 (515)
+...+.|++.+-+.| +++.-...++++-++. .++.|-+ =|.--.+..++.++. ++-| |.|+
T Consensus 27 ~al~~~Gi~~iEit~-~t~~a~~~i~~l~~~~-~~~~vGA--GTVl~~~~a~~a~~aGA~Fi-vsP~------------- 88 (204)
T TIGR01182 27 KALIEGGLRVLEVTL-RTPVALDAIRLLRKEV-PDALIGA--GTVLNPEQLRQAVDAGAQFI-VSPG------------- 88 (204)
T ss_pred HHHHHcCCCEEEEeC-CCccHHHHHHHHHHHC-CCCEEEE--EeCCCHHHHHHHHHcCCCEE-ECCC-------------
Confidence 444567788877776 6666555555544433 2333332 233333444555544 4444 3433
Q ss_pred HHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 353 LQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 353 aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
.-..+++.|+++|.|++- -.-+|| ++..+...|+|.+=|=
T Consensus 89 ~~~~v~~~~~~~~i~~iP---------G~~Tpt-----Ei~~A~~~Ga~~vKlF 128 (204)
T TIGR01182 89 LTPELAKHAQDHGIPIIP---------GVATPS-----EIMLALELGITALKLF 128 (204)
T ss_pred CCHHHHHHHHHcCCcEEC---------CCCCHH-----HHHHHHHCCCCEEEEC
Confidence 134889999999999874 122333 4668999999998874
No 245
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=60.13 E-value=53 Score=29.35 Aligned_cols=67 Identities=19% Similarity=0.188 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEe
Q 010211 295 VHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVAT 372 (515)
Q Consensus 295 v~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivAT 372 (515)
+..+++.+.+.+..+.+.+.-+.. .-++++++++-.|.|+.+-.+ ......+-+.|+++++|+|.+.
T Consensus 58 a~~~~~~l~~~np~~~v~~~~~~~-~~~~~~~~~~~~d~vi~~~d~----------~~~~~~l~~~~~~~~~p~i~~~ 124 (135)
T PF00899_consen 58 AEAAKERLQEINPDVEVEAIPEKI-DEENIEELLKDYDIVIDCVDS----------LAARLLLNEICREYGIPFIDAG 124 (135)
T ss_dssp HHHHHHHHHHHSTTSEEEEEESHC-SHHHHHHHHHTSSEEEEESSS----------HHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHhcCceeeeeeeccc-ccccccccccCCCEEEEecCC----------HHHHHHHHHHHHHcCCCEEEEE
Confidence 345778888888888876644443 457888888889988876322 4566778889999999998764
No 246
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=60.13 E-value=1.6e+02 Score=28.78 Aligned_cols=116 Identities=15% Similarity=0.141 Sum_probs=57.8
Q ss_pred HHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChh---------------------hhhcHHHHH
Q 010211 270 WEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESAD---------------------SIPNLHSII 328 (515)
Q Consensus 270 ~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~---------------------aveNldeIl 328 (515)
.++++...+.|+++|.+.- ..-++...+++..+..+.+. +++-+.... .++-+....
T Consensus 86 ~~d~~~~~~~G~~~vilg~-~~l~~~~~~~~~~~~~~~~~-i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 163 (232)
T TIGR03572 86 LEDAKKLLSLGADKVSINT-AALENPDLIEEAARRFGSQC-VVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAE 163 (232)
T ss_pred HHHHHHHHHcCCCEEEECh-hHhcCHHHHHHHHHHcCCce-EEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHH
Confidence 4455555667999887762 22233344555555444432 333333222 122222222
Q ss_pred hh-cCeeEEcCCccccc---CCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHH-HHHhCCcEE
Q 010211 329 SA-SDGAMVARGDLGAE---LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAV 403 (515)
Q Consensus 329 ~~-sDgImIgrgDLg~e---lg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~Dvan-aV~~G~D~v 403 (515)
+. +|.+.+.- ...+ -| .. ....++ .++..++|++.+. +.-+..+ +.. .-..|+|++
T Consensus 164 ~~G~d~i~i~~--i~~~g~~~g-~~-~~~~~~---i~~~~~ipvia~G---------Gi~s~~d---i~~~l~~~gadgV 224 (232)
T TIGR03572 164 QLGAGEILLNS--IDRDGTMKG-YD-LELIKT---VSDAVSIPVIALG---------GAGSLDD---LVEVALEAGASAV 224 (232)
T ss_pred HcCCCEEEEeC--CCccCCcCC-CC-HHHHHH---HHhhCCCCEEEEC---------CCCCHHH---HHHHHHHcCCCEE
Confidence 22 68888752 2221 12 12 222333 3445689999854 3444444 444 344699999
Q ss_pred eec
Q 010211 404 MLS 406 (515)
Q Consensus 404 mLs 406 (515)
++.
T Consensus 225 ~vg 227 (232)
T TIGR03572 225 AAA 227 (232)
T ss_pred EEe
Confidence 986
No 247
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=60.12 E-value=13 Score=41.54 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=37.7
Q ss_pred EecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHH
Q 010211 105 CTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKE 149 (515)
Q Consensus 105 ~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~ 149 (515)
+.+|..-++.+.++.|+++|+++.=++.+||......+.|+.||+
T Consensus 234 aavg~~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~ 278 (495)
T PTZ00314 234 AAISTRPEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKS 278 (495)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHh
Confidence 477877677899999999999999999999988776666666664
No 248
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=59.93 E-value=16 Score=40.76 Aligned_cols=50 Identities=28% Similarity=0.425 Sum_probs=41.7
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHH
Q 010211 100 KTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKE 149 (515)
Q Consensus 100 ~TKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~ 149 (515)
+-..=+.+|+.-+..|-.++|+++|+|+.=+..+||......++|+.||+
T Consensus 236 ~l~vgaavg~~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~ 285 (505)
T PLN02274 236 KLLVGAAIGTRESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKK 285 (505)
T ss_pred CEEEEEEEcCCccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHH
Confidence 34455678988888999999999999999999999988776677777775
No 249
>PRK15452 putative protease; Provisional
Probab=59.79 E-value=34 Score=37.72 Aligned_cols=84 Identities=12% Similarity=0.150 Sum_probs=54.4
Q ss_pred eEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccC---CCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcC
Q 010211 310 HVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAEL---PIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPT 385 (515)
Q Consensus 310 ~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~el---g~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~Pt 385 (515)
-+.|...+.++++ .-+.. +|+|.+|-..++.-. .+. . +-.++.++.|+++|+.+.++++ ..|.
T Consensus 5 eLlapag~~e~l~---aAi~~GADaVY~G~~~~~~R~~~~~f~-~-edl~eav~~ah~~g~kvyvt~n--------~i~~ 71 (443)
T PRK15452 5 ELLSPAGTLKNMR---YAFAYGADAVYAGQPRYSLRVRNNEFN-H-ENLALGINEAHALGKKFYVVVN--------IAPH 71 (443)
T ss_pred EEEEECCCHHHHH---HHHHCCCCEEEECCCccchhhhccCCC-H-HHHHHHHHHHHHcCCEEEEEec--------CcCC
Confidence 4666666655553 33344 999999977776532 121 1 3467789999999999999763 3444
Q ss_pred hHHHhHH----HHHHHhCCcEEeec
Q 010211 386 RAEVSDI----AIAVREGADAVMLS 406 (515)
Q Consensus 386 rAEv~Dv----anaV~~G~D~vmLs 406 (515)
..|.... ......|+|+++.+
T Consensus 72 e~el~~~~~~l~~l~~~gvDgvIV~ 96 (443)
T PRK15452 72 NAKLKTFIRDLEPVIAMKPDALIMS 96 (443)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 4554443 33345689999986
No 250
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=59.74 E-value=29 Score=35.87 Aligned_cols=65 Identities=11% Similarity=0.197 Sum_probs=43.9
Q ss_pred hHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhh--hhcHHHHHhh-cCeeEEcC
Q 010211 269 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADS--IPNLHSIISA-SDGAMVAR 338 (515)
Q Consensus 269 D~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~a--veNldeIl~~-sDgImIgr 338 (515)
..+.+..+++.|+|+|.+=.. +.+++.++.+.+.....++.+.| --| .+|+.++++. +|+|-+|.
T Consensus 191 tleea~~A~~~GaDiI~LDn~-~~e~l~~~v~~~~~~~~~~~ieA----sGgIt~~ni~~ya~~GvD~IsvG~ 258 (273)
T PRK05848 191 SLEEAKNAMNAGADIVMCDNM-SVEEIKEVVAYRNANYPHVLLEA----SGNITLENINAYAKSGVDAISSGS 258 (273)
T ss_pred CHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhhccCCCeEEEE----ECCCCHHHHHHHHHcCCCEEEeCh
Confidence 456777788999999998653 67777776666543334444333 333 4567777777 89999973
No 251
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=59.12 E-value=2.3e+02 Score=31.89 Aligned_cols=165 Identities=18% Similarity=0.183 Sum_probs=94.1
Q ss_pred CceeeeCCCccCCCCCCHhhHHHhhcc-hhcCCcEEEeccc-CCHHHHHHHHHHHHhcCC----CceEEEEecC--hhhh
Q 010211 250 RRHLNVRGKSANLPSITDKDWEDIKFG-VDNQVDFYAVSFV-KDAKVVHELKDYLKSCNA----DIHVIVKIES--ADSI 321 (515)
Q Consensus 250 ~KgVnlpg~~~~lp~ltekD~~dI~~a-l~~gvD~ValSfV-rsa~dv~~vr~~l~~~~~----~i~IIaKIEt--~~av 321 (515)
|-|-..||.. +|.+|+..|... .+.|+|.|=+.|- .+.++...++...+.... ...+.++|-. +---
T Consensus 93 RDGeQ~~gv~-----fs~eeKi~Ia~~L~~~GVd~IEvG~Pa~s~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~ 167 (503)
T PLN03228 93 RDGEQSPGGS-----LTPPQKLEIARQLAKLRVDIMEVGFPGSSEEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKK 167 (503)
T ss_pred CCCCCCCCCC-----CCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhcccccccccccceEEeeecccCH
Confidence 3445556654 366777666444 5679999877664 445555555554432111 1111222210 0001
Q ss_pred hcHHHHHhh-c----C--eeEEcCCccccc----CCCCCHHHHHHHHHHHHHhcCCc-EEEEeccccccccCCCcChHH-
Q 010211 322 PNLHSIISA-S----D--GAMVARGDLGAE----LPIEDVPLLQEDIIRRCRSMQKP-VIVATNMLESMIDHPTPTRAE- 388 (515)
Q Consensus 322 eNldeIl~~-s----D--gImIgrgDLg~e----lg~e~v~~aqk~Ii~~c~~aGKP-vivATqmLeSMi~~~~PtrAE- 388 (515)
+.+|..++. . | .++++-.|+-.. +..+++.......++.++++|.. |.+. ...-+|++
T Consensus 168 ~dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~---------~EDa~Rtd~ 238 (503)
T PLN03228 168 RDIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFG---------CEDGGRSDK 238 (503)
T ss_pred hhHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEec---------cccccccCH
Confidence 133444433 1 2 245555555432 22356777788999999999975 4432 22344444
Q ss_pred --HhHHH-HHHHhCCcEEeecccccCCCCHHHHHHHHHHHHHHH
Q 010211 389 --VSDIA-IAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRT 429 (515)
Q Consensus 389 --v~Dva-naV~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~a 429 (515)
+.+.+ .+...|+|.+-|. +|.=...|.+.-+.+..+....
T Consensus 239 efl~~~~~~a~~~Gad~I~l~-DTvG~~tP~~v~~lV~~l~~~~ 281 (503)
T PLN03228 239 EFLCKILGEAIKAGATSVGIA-DTVGINMPHEFGELVTYVKANT 281 (503)
T ss_pred HHHHHHHHHHHhcCCCEEEEe-cCCCCCCHHHHHHHHHHHHHHh
Confidence 33333 5667899999885 8888889999888888886654
No 252
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=58.59 E-value=17 Score=30.94 Aligned_cols=42 Identities=19% Similarity=0.335 Sum_probs=33.2
Q ss_pred cccccccCcCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEec
Q 010211 206 DDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELK 248 (515)
Q Consensus 206 ~~l~~~v~~Gd~IliDDG~I~l~V~~~~~~~v~~~V~~gG~L~ 248 (515)
.++.+.+++||+|..-.|. .-+|.+++++.+..++..|..++
T Consensus 32 ~~m~~~L~~Gd~VvT~gGi-~G~V~~i~d~~v~vei~~g~~i~ 73 (84)
T TIGR00739 32 KKLIESLKKGDKVLTIGGI-IGTVTKIAENTIVIELNDNTEIT 73 (84)
T ss_pred HHHHHhCCCCCEEEECCCe-EEEEEEEeCCEEEEEECCCeEEE
Confidence 4678899999999998875 45677899998888776666654
No 253
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=58.55 E-value=96 Score=32.15 Aligned_cols=120 Identities=18% Similarity=0.229 Sum_probs=80.0
Q ss_pred CCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEE-Eeccc--cccccCC
Q 010211 307 ADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIV-ATNML--ESMIDHP 382 (515)
Q Consensus 307 ~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPviv-ATqmL--eSMi~~~ 382 (515)
..++|...+....-.+.+.+-+.. .+.||+.-. .+++++=...-+++++.|++.|..|=. -..+- |.-....
T Consensus 68 ~~VPV~lHLDH~~~~~~i~~ai~~GftSVMiD~S----~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~ 143 (276)
T cd00947 68 ASVPVALHLDHGSSFELIKRAIRAGFSSVMIDGS----HLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGD 143 (276)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHhCCCEEEeCCC----CCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccc
Confidence 378999999998766666555555 789999743 357888888899999999999998721 01110 0000000
Q ss_pred CcChHHHhHHHHHHHh-CCcEEeecccccCCCCHH----HHHHHHHHHHHHHh
Q 010211 383 TPTRAEVSDIAIAVRE-GADAVMLSGETAHGKFPL----KAVKVMHTVALRTE 430 (515)
Q Consensus 383 ~PtrAEv~DvanaV~~-G~D~vmLs~ETa~G~yPv----eaV~~m~~I~~~aE 430 (515)
.-......+...++.. |+|++..|--|+.|.|+- -=.+.+.+|.....
T Consensus 144 ~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~ 196 (276)
T cd00947 144 EGLLTDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVN 196 (276)
T ss_pred cccCCCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHhC
Confidence 0001113445577764 999999999999999964 45666777777663
No 254
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=58.52 E-value=2.2e+02 Score=29.15 Aligned_cols=163 Identities=15% Similarity=0.120 Sum_probs=92.4
Q ss_pred eeeeCCCccCCCCCCHhhHHHh-hcchhcCCcEEEec-ccCCH-----HHHHHHHHHHHhcCCCceEEEEecChhhhhcH
Q 010211 252 HLNVRGKSANLPSITDKDWEDI-KFGVDNQVDFYAVS-FVKDA-----KVVHELKDYLKSCNADIHVIVKIESADSIPNL 324 (515)
Q Consensus 252 gVnlpg~~~~lp~ltekD~~dI-~~al~~gvD~ValS-fVrsa-----~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNl 324 (515)
|..-|+.. ++.+++..| +.-.+.|+|.|=+. |+... .|-.++...+... .+..+.+-.-+.+++
T Consensus 9 G~Q~~~~~-----~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~~-~~~~~~~~~~~~~dv--- 79 (274)
T cd07938 9 GLQNEKTF-----IPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPRR-PGVRYSALVPNLRGA--- 79 (274)
T ss_pred CCcCCCCC-----cCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhcccC-CCCEEEEECCCHHHH---
Confidence 55555554 355666555 44457899998665 43221 3333445555432 245555555444433
Q ss_pred HHHHhh-cCe--eEEcCCcc--ccc--CCCCCHHHHHHHHHHHHHhcCCcEEEEecccccccc-CCC--c-ChHHHhHHH
Q 010211 325 HSIISA-SDG--AMVARGDL--GAE--LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMID-HPT--P-TRAEVSDIA 393 (515)
Q Consensus 325 deIl~~-sDg--ImIgrgDL--g~e--lg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~-~~~--P-trAEv~Dva 393 (515)
+..++. .|. +++.-.|+ -.. ...++.....++.++.++++|+-+...- +|.+ .+. + +...+.+.+
T Consensus 80 ~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i----~~~f~~~~~~~~~~~~~~~~~ 155 (274)
T cd07938 80 ERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYV----STAFGCPYEGEVPPERVAEVA 155 (274)
T ss_pred HHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEE----EeEecCCCCCCCCHHHHHHHH
Confidence 333433 454 34444443 111 1224666777888999999999875421 1111 122 1 233344444
Q ss_pred -HHHHhCCcEEeecccccCCCCHHHHHHHHHHHHHH
Q 010211 394 -IAVREGADAVMLSGETAHGKFPLKAVKVMHTVALR 428 (515)
Q Consensus 394 -naV~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~ 428 (515)
.+...|+|.+-|. +|.=...|.+.-+.+..+..+
T Consensus 156 ~~~~~~Ga~~i~l~-DT~G~~~P~~v~~lv~~l~~~ 190 (274)
T cd07938 156 ERLLDLGCDEISLG-DTIGVATPAQVRRLLEAVLER 190 (274)
T ss_pred HHHHHcCCCEEEEC-CCCCccCHHHHHHHHHHHHHH
Confidence 4566799999985 888778898888888777654
No 255
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=58.52 E-value=98 Score=31.61 Aligned_cols=91 Identities=14% Similarity=0.188 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 010211 292 AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (515)
Q Consensus 292 a~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivA 371 (515)
.+.+..++++.++. .+.+++-+...+.++-+ .+.+|.+-||-+++.- ..+++++.+.||||++.
T Consensus 75 ~~gl~~l~~~~~~~--Gl~~~t~~~d~~~~~~l---~~~~d~lkI~s~~~~n-----------~~LL~~~a~~gkPVilk 138 (260)
T TIGR01361 75 EEGLKLLRRAADEH--GLPVVTEVMDPRDVEIV---AEYADILQIGARNMQN-----------FELLKEVGKQGKPVLLK 138 (260)
T ss_pred HHHHHHHHHHHHHh--CCCEEEeeCChhhHHHH---HhhCCEEEECcccccC-----------HHHHHHHhcCCCcEEEe
Confidence 45566677776654 46788877777666554 4558999999776532 33778888999999996
Q ss_pred eccccccccCCCcChHHHhHHHHHHH-hCCcEEeec
Q 010211 372 TNMLESMIDHPTPTRAEVSDIAIAVR-EGADAVMLS 406 (515)
Q Consensus 372 TqmLeSMi~~~~PtrAEv~DvanaV~-~G~D~vmLs 406 (515)
|.| .++-.|+...+..+. .|.+-++|.
T Consensus 139 ~G~--------~~t~~e~~~Ave~i~~~Gn~~i~l~ 166 (260)
T TIGR01361 139 RGM--------GNTIEEWLYAAEYILSSGNGNVILC 166 (260)
T ss_pred CCC--------CCCHHHHHHHHHHHHHcCCCcEEEE
Confidence 532 346778877777775 577555653
No 256
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=58.39 E-value=1e+02 Score=31.68 Aligned_cols=95 Identities=17% Similarity=0.184 Sum_probs=54.9
Q ss_pred HHhhcchhcCCcEEEec------ccCCHHHHHHH-HHHHHhcCCCceEEEEecChhhhhcHHHHHh----h-cCeeEEcC
Q 010211 271 EDIKFGVDNQVDFYAVS------FVKDAKVVHEL-KDYLKSCNADIHVIVKIESADSIPNLHSIIS----A-SDGAMVAR 338 (515)
Q Consensus 271 ~dI~~al~~gvD~ValS------fVrsa~dv~~v-r~~l~~~~~~i~IIaKIEt~~aveNldeIl~----~-sDgImIgr 338 (515)
+.+++.++.|+|+|.+. +.-|.++-.++ +...+..+.++.||+.+-. +.+..-+.++ . +|++|+-+
T Consensus 30 ~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~--~t~~ai~~a~~a~~~Gadav~~~p 107 (296)
T TIGR03249 30 ENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG--NTSDAIEIARLAEKAGADGYLLLP 107 (296)
T ss_pred HHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc--cHHHHHHHHHHHHHhCCCEEEECC
Confidence 45578889999998763 22344444443 3345555667889998742 2333333333 2 79999976
Q ss_pred CcccccCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 010211 339 GDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (515)
Q Consensus 339 gDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivA 371 (515)
--... ..-+.+....+.| |.+.+.|+++.
T Consensus 108 P~y~~-~s~~~i~~~f~~v---~~a~~~pvilY 136 (296)
T TIGR03249 108 PYLIN-GEQEGLYAHVEAV---CESTDLGVIVY 136 (296)
T ss_pred CCCCC-CCHHHHHHHHHHH---HhccCCCEEEE
Confidence 54321 1113444444444 44567999885
No 257
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=58.29 E-value=2.1e+02 Score=29.36 Aligned_cols=118 Identities=18% Similarity=0.247 Sum_probs=71.5
Q ss_pred HhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCC-CCH
Q 010211 272 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPI-EDV 350 (515)
Q Consensus 272 dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~-e~v 350 (515)
-++.+.+.|+|++.++=.. .++-..+++.+.+.| +.+|.-|--...-+.+..|++.++|.+=.-.=.|+ .|. ..+
T Consensus 107 F~~~~~~aGvdGlIipDLP-~ee~~~~~~~~~~~g--l~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~Gv-TG~~~~~ 182 (259)
T PF00290_consen 107 FFKEAKEAGVDGLIIPDLP-PEESEELREAAKKHG--LDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGV-TGSRTEL 182 (259)
T ss_dssp HHHHHHHHTEEEEEETTSB-GGGHHHHHHHHHHTT---EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSS-SSTTSSC
T ss_pred HHHHHHHcCCCEEEEcCCC-hHHHHHHHHHHHHcC--CeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCC-CCCcccc
Confidence 3455667899999987543 355566777776655 44454554445667899999987776543223333 233 356
Q ss_pred HHHHHHHHHHHHhcC-CcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 351 PLLQEDIIRRCRSMQ-KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 351 ~~aqk~Ii~~c~~aG-KPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
+.-.+..++..+++. +|+.+- -+.-+++.+. . +..|+|+++.-
T Consensus 183 ~~~l~~~i~~ik~~~~~Pv~vG---------FGI~~~e~~~---~-~~~~aDGvIVG 226 (259)
T PF00290_consen 183 PDELKEFIKRIKKHTDLPVAVG---------FGISTPEQAK---K-LAAGADGVIVG 226 (259)
T ss_dssp HHHHHHHHHHHHHTTSS-EEEE---------SSS-SHHHHH---H-HHTTSSEEEES
T ss_pred hHHHHHHHHHHHhhcCcceEEe---------cCCCCHHHHH---H-HHccCCEEEEC
Confidence 666677777777665 888773 3555554432 3 34899999964
No 258
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=58.14 E-value=1.1e+02 Score=31.99 Aligned_cols=117 Identities=15% Similarity=0.191 Sum_probs=77.4
Q ss_pred CCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEE-Eeccc---cccccC
Q 010211 307 ADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIV-ATNML---ESMIDH 381 (515)
Q Consensus 307 ~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPviv-ATqmL---eSMi~~ 381 (515)
-.++|...+.....++.+.+=++. .+-||+.-. .+++++=...-+++++.|+..|.+|=. -.++- +.....
T Consensus 76 ~~VPV~lHLDHg~~~e~i~~ai~~GftSVMiDgS----~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~ 151 (288)
T TIGR00167 76 YGVPVALHLDHGASEEDCAQAVKAGFSSVMIDGS----HEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVA 151 (288)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHcCCCEEEecCC----CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccc
Confidence 377899999988866555444444 788999733 457888888889999999999999821 01110 000000
Q ss_pred ---CCcChHHHhHHHHHHHh-CCcEEeecccccCCCC---HH-HHHHHHHHHHHHH
Q 010211 382 ---PTPTRAEVSDIAIAVRE-GADAVMLSGETAHGKF---PL-KAVKVMHTVALRT 429 (515)
Q Consensus 382 ---~~PtrAEv~DvanaV~~-G~D~vmLs~ETa~G~y---Pv-eaV~~m~~I~~~a 429 (515)
..=|. ..+...|+.. |+|++-.+--|+.|.| |. --...+.+|.+..
T Consensus 152 ~~~~~~T~--peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v 205 (288)
T TIGR00167 152 DESALYTD--PEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYV 205 (288)
T ss_pred cccccCCC--HHHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHh
Confidence 00111 2345577764 9999999999999999 44 4556677775555
No 259
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=58.00 E-value=2.2e+02 Score=29.03 Aligned_cols=85 Identities=20% Similarity=0.361 Sum_probs=51.1
Q ss_pred CceEEEEe--cChhhhhcHHHHHhh----cCeeEEcCCcccccCCC--------CCHHHHHHHHHHHHHhc-CCcEEEEe
Q 010211 308 DIHVIVKI--ESADSIPNLHSIISA----SDGAMVARGDLGAELPI--------EDVPLLQEDIIRRCRSM-QKPVIVAT 372 (515)
Q Consensus 308 ~i~IIaKI--Et~~aveNldeIl~~----sDgImIgrgDLg~elg~--------e~v~~aqk~Ii~~c~~a-GKPvivAT 372 (515)
+..++++| .+++.+...-++++. +|+|=+- +.+|. ..-+....+|+++.+++ ++|+.+=
T Consensus 90 ~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN-----~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vK- 163 (300)
T TIGR01037 90 PTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELN-----LSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAK- 163 (300)
T ss_pred CCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEE-----CCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEE-
Confidence 35789999 555555555555542 5666553 22221 12344567778877765 8898872
Q ss_pred ccccccccCCCcChHHHhHHHH-HHHhCCcEEeecc
Q 010211 373 NMLESMIDHPTPTRAEVSDIAI-AVREGADAVMLSG 407 (515)
Q Consensus 373 qmLeSMi~~~~PtrAEv~Dvan-aV~~G~D~vmLs~ 407 (515)
- .|+-.+..+.+. +...|+|++.+++
T Consensus 164 --------i-~~~~~~~~~~a~~l~~~G~d~i~v~n 190 (300)
T TIGR01037 164 --------L-SPNVTDITEIAKAAEEAGADGLTLIN 190 (300)
T ss_pred --------C-CCChhhHHHHHHHHHHcCCCEEEEEc
Confidence 1 244445555555 4567999998864
No 260
>PRK06801 hypothetical protein; Provisional
Probab=57.73 E-value=2.1e+02 Score=29.82 Aligned_cols=120 Identities=15% Similarity=0.188 Sum_probs=78.9
Q ss_pred CCCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccC---
Q 010211 306 NADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDH--- 381 (515)
Q Consensus 306 ~~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~--- 381 (515)
+..++|........-++.+++-++. .+.||+--- .+++++-...-+++.+.|+.+|.+|=..=..+-.....
T Consensus 72 ~~~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~D~S----~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~ 147 (286)
T PRK06801 72 RHDIPVVLNLDHGLHFEAVVRALRLGFSSVMFDGS----TLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALY 147 (286)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHhCCcEEEEcCC----CCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCccc
Confidence 3468899999988777777776666 899999432 34677778888999999999999873221111111000
Q ss_pred -C--CcChHHHhHHHHHH-HhCCcEEeecccccCCCCHH---HHHHHHHHHHHHH
Q 010211 382 -P--TPTRAEVSDIAIAV-REGADAVMLSGETAHGKFPL---KAVKVMHTVALRT 429 (515)
Q Consensus 382 -~--~PtrAEv~DvanaV-~~G~D~vmLs~ETa~G~yPv---eaV~~m~~I~~~a 429 (515)
. .-......+...++ ..|+|++-++--|+.|+|+- .-...+.+|....
T Consensus 148 ~~~~~~~~T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~ 202 (286)
T PRK06801 148 GEADSAKFTDPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQT 202 (286)
T ss_pred CCcccccCCCHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhc
Confidence 0 00011123455677 68999999999999999954 3455666665543
No 261
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=57.63 E-value=1.8e+02 Score=30.39 Aligned_cols=139 Identities=18% Similarity=0.183 Sum_probs=76.4
Q ss_pred HHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh--cCeeEEcC------Cc-
Q 010211 270 WEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA--SDGAMVAR------GD- 340 (515)
Q Consensus 270 ~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~--sDgImIgr------gD- 340 (515)
....+...+.|+|+|..+...++ ..++-..++..- +.++++-| .+++|-+.. .-.=||+- |+
T Consensus 77 ~~Ea~~L~eaGvDiIDaT~r~rP--~~~~~~~iK~~~-~~l~MAD~------stleEal~a~~~Gad~I~TTl~gyT~~~ 147 (283)
T cd04727 77 FVEAQILEALGVDMIDESEVLTP--ADEEHHIDKHKF-KVPFVCGA------RNLGEALRRISEGAAMIRTKGEAGTGNV 147 (283)
T ss_pred HHHHHHHHHcCCCEEeccCCCCc--HHHHHHHHHHHc-CCcEEccC------CCHHHHHHHHHCCCCEEEecCCCCCCcH
Confidence 34445556789999998887777 344445555433 67888844 445555444 11223331 11
Q ss_pred -------------ccccCCC--CCHHH-------HHHHHHHHHHhcCCcEE-EEeccccccccCCCcChHHHhHHHHHHH
Q 010211 341 -------------LGAELPI--EDVPL-------LQEDIIRRCRSMQKPVI-VATNMLESMIDHPTPTRAEVSDIAIAVR 397 (515)
Q Consensus 341 -------------Lg~elg~--e~v~~-------aqk~Ii~~c~~aGKPvi-vATqmLeSMi~~~~PtrAEv~DvanaV~ 397 (515)
+....|+ +.+.. -.+.+-+.++...+||+ +| ..+.-|.+. +..++.
T Consensus 148 ~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iA--------eGGI~Tpen---a~~v~e 216 (283)
T cd04727 148 VEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFA--------AGGVATPAD---AALMMQ 216 (283)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEE--------eCCCCCHHH---HHHHHH
Confidence 0000111 01000 00112223344569997 34 344434443 346677
Q ss_pred hCCcEEeecccccCCCCHHHHHHHHHHHHHH
Q 010211 398 EGADAVMLSGETAHGKFPLKAVKVMHTVALR 428 (515)
Q Consensus 398 ~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~ 428 (515)
.|+|+++..+.-..-..|-+.++.+.+....
T Consensus 217 ~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~ 247 (283)
T cd04727 217 LGADGVFVGSGIFKSENPEKRARAIVEAVTH 247 (283)
T ss_pred cCCCEEEEcHHhhcCCCHHHHHHHHHHHHHh
Confidence 8999999986666667899999888776554
No 262
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=57.56 E-value=81 Score=31.28 Aligned_cols=109 Identities=15% Similarity=0.159 Sum_probs=64.9
Q ss_pred EEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhc-C--eeEEcCCc--------ccccCCCC--C
Q 010211 283 FYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISAS-D--GAMVARGD--------LGAELPIE--D 349 (515)
Q Consensus 283 ~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~s-D--gImIgrgD--------Lg~elg~e--~ 349 (515)
.+.+=...++++...+.+.+-+.|-+..= .-.-|+.+++.+.++.+.. | .++||-|= ...+.|.. -
T Consensus 15 vi~vir~~~~~~a~~~~~al~~~Gi~~iE-it~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fiv 93 (213)
T PRK06552 15 VVAVVRGESKEEALKISLAVIKGGIKAIE-VTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIV 93 (213)
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCEEE-EECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEE
Confidence 34444456777776666666554443222 2334777777777777654 2 47777551 11112210 1
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 350 VPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 350 v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
-|....++++.|+++|.|++--+ .+| . ++..+...|+|.+-+-
T Consensus 94 sP~~~~~v~~~~~~~~i~~iPG~---------~T~--~---E~~~A~~~Gad~vklF 136 (213)
T PRK06552 94 SPSFNRETAKICNLYQIPYLPGC---------MTV--T---EIVTALEAGSEIVKLF 136 (213)
T ss_pred CCCCCHHHHHHHHHcCCCEECCc---------CCH--H---HHHHHHHcCCCEEEEC
Confidence 22345789999999999997522 233 3 3457788999999983
No 263
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=57.55 E-value=37 Score=35.18 Aligned_cols=67 Identities=19% Similarity=0.189 Sum_probs=49.4
Q ss_pred hHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhh--hcHHHHHhh-cCeeEEcC
Q 010211 269 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSI--PNLHSIISA-SDGAMVAR 338 (515)
Q Consensus 269 D~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~av--eNldeIl~~-sDgImIgr 338 (515)
..+++..+++.|+|+|.+=.. ++++++++.+++.+.+.+.. .+||---|+ +|+.++++. +|+|-+|.
T Consensus 191 ~leea~~a~~agaDiI~LDn~-~~e~l~~~v~~l~~~~~~~~--~~leaSGGI~~~ni~~yA~tGvD~Is~ga 260 (278)
T PRK08385 191 SLEDALKAAKAGADIIMLDNM-TPEEIREVIEALKREGLRER--VKIEVSGGITPENIEEYAKLDVDVISLGA 260 (278)
T ss_pred CHHHHHHHHHcCcCEEEECCC-CHHHHHHHHHHHHhcCcCCC--EEEEEECCCCHHHHHHHHHcCCCEEEeCh
Confidence 456777888999999988765 79999999998877652211 245555554 577888877 89999873
No 264
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=57.42 E-value=84 Score=33.96 Aligned_cols=151 Identities=19% Similarity=0.227 Sum_probs=77.9
Q ss_pred CeEEEEEeeCcEeccCceeeeCCCccCCCCCCHhhHHHhhcchhcCCcEEEecc---cCCHHHHHHHHHHHHhcCCCceE
Q 010211 235 DLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSF---VKDAKVVHELKDYLKSCNADIHV 311 (515)
Q Consensus 235 ~~v~~~V~~gG~L~s~KgVnlpg~~~~lp~ltekD~~dI~~al~~gvD~ValSf---Vrsa~dv~~vr~~l~~~~~~i~I 311 (515)
+.++.++=+|.+ ...|=.||+..+ | .++..+. .++.|.|.+.-+. +.+.+|+.++-+.|++.+....|
T Consensus 136 ~~iEIKigQGAK--pG~GG~Lp~~KV-----~-~~ia~~R-~~~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pV 206 (368)
T PF01645_consen 136 DMIEIKIGQGAK--PGEGGHLPGEKV-----T-EEIARIR-GVPPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPV 206 (368)
T ss_dssp SEEEEE---TTS--TTT--EE-GGG--------HHHHHHH-TS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEE
T ss_pred CeEEEEEecCcc--ccCcceechhhc-----h-HHHHHHh-CCCCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcE
Confidence 344444444443 344666787774 3 3445444 4567888876543 56777777777788888888899
Q ss_pred EEEecChhhhhcHHHHHh-h-cCeeEEcCCccc---------ccCCCCCHHHHHHHHHHHHHhcC---CcEEEEeccccc
Q 010211 312 IVKIESADSIPNLHSIIS-A-SDGAMVARGDLG---------AELPIEDVPLLQEDIIRRCRSMQ---KPVIVATNMLES 377 (515)
Q Consensus 312 IaKIEt~~aveNldeIl~-~-sDgImIgrgDLg---------~elg~e~v~~aqk~Ii~~c~~aG---KPvivATqmLeS 377 (515)
-.|+=.-..++.+...+. . +|.|.|.=++=| -+.|+| +..+..++.+...+.| +..++++
T Consensus 207 gvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP-~~~~l~~a~~~L~~~glr~~V~Li~s----- 280 (368)
T PF01645_consen 207 GVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLP-TEYALARAHQALVKNGLRDRVSLIAS----- 280 (368)
T ss_dssp EEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC----HHHHHHHHHHHHHCTT-CCCSEEEEE-----
T ss_pred EEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCc-HHHHHHHHHHHHHHcCCCCceEEEEe-----
Confidence 999976666655555322 2 799999755433 233443 3344555555555555 3344433
Q ss_pred cccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 378 MIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 378 Mi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
...-| -.|++-++..|+|++-+.
T Consensus 281 ---Ggl~t---~~dv~kalaLGAD~v~ig 303 (368)
T PF01645_consen 281 ---GGLRT---GDDVAKALALGADAVYIG 303 (368)
T ss_dssp ---SS--S---HHHHHHHHHCT-SEEE-S
T ss_pred ---CCccC---HHHHHHHHhcCCCeeEec
Confidence 22222 458999999999999874
No 265
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=57.06 E-value=1.5e+02 Score=31.62 Aligned_cols=133 Identities=11% Similarity=0.088 Sum_probs=79.1
Q ss_pred CCCCCCHhhHHHhhcchhcCCcEEEecccCCH---------------HHHHHHHHHHHhcCCCceEEEEec------C-h
Q 010211 261 NLPSITDKDWEDIKFGVDNQVDFYAVSFVKDA---------------KVVHELKDYLKSCNADIHVIVKIE------S-A 318 (515)
Q Consensus 261 ~lp~ltekD~~dI~~al~~gvD~ValSfVrsa---------------~dv~~vr~~l~~~~~~i~IIaKIE------t-~ 318 (515)
++-.+|-+|.---+.+-+.|+|.|.++ .+. ++...--+.+.+...+..+++=++ + .
T Consensus 36 kivmlTAyD~~sA~i~d~aGvD~ILVG--DSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e 113 (332)
T PLN02424 36 PITMVTAYDYPSAVHVDSAGIDVCLVG--DSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTD 113 (332)
T ss_pred cEEEEecCCHHHHHHHHHcCCCEEEEC--CcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHH
Confidence 455677788766666667899998865 222 222222222344445666775554 3 4
Q ss_pred hhhhcHHHHHhh--cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEE----EEecccccccc---CCC-cChHH
Q 010211 319 DSIPNLHSIISA--SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVI----VATNMLESMID---HPT-PTRAE 388 (515)
Q Consensus 319 ~aveNldeIl~~--sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvi----vATqmLeSMi~---~~~-PtrAE 388 (515)
++++|...++.. +|+|=+--|. ..+-.+|++..++|+||+ +--|-...|-. .+. ...++
T Consensus 114 ~av~nA~rl~~eaGa~aVKlEGg~-----------~~~~~~I~~l~~~GIPV~gHiGLtPQs~~~lGGykvqGr~~~~a~ 182 (332)
T PLN02424 114 QAVESAVRMLKEGGMDAVKLEGGS-----------PSRVTAAKAIVEAGIAVMGHVGLTPQAISVLGGFRPQGRTAESAV 182 (332)
T ss_pred HHHHHHHHHHHHhCCcEEEECCCc-----------HHHHHHHHHHHHcCCCEEEeecccceeehhhcCccccCCCHHHHH
Confidence 788899999764 7887774332 223345555559999998 65554444421 222 22232
Q ss_pred --HhHHHHHHHhCCcEEeec
Q 010211 389 --VSDIAIAVREGADAVMLS 406 (515)
Q Consensus 389 --v~DvanaV~~G~D~vmLs 406 (515)
+.|.-..-..|+++++|-
T Consensus 183 ~li~dA~ale~AGAf~ivLE 202 (332)
T PLN02424 183 KVVETALALQEAGCFAVVLE 202 (332)
T ss_pred HHHHHHHHHHHcCCcEEEEc
Confidence 555555668899999984
No 266
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=57.02 E-value=1.7e+02 Score=29.06 Aligned_cols=130 Identities=15% Similarity=0.202 Sum_probs=74.9
Q ss_pred hHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhh-------hhcHHHHHhh----cCeeEEc
Q 010211 269 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADS-------IPNLHSIISA----SDGAMVA 337 (515)
Q Consensus 269 D~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~a-------veNldeIl~~----sDgImIg 337 (515)
+.++++..+..|++-|.++. ....+ ..+++.++..+++ .+++-|....+ ..++.+.++. ++.+++.
T Consensus 89 ~~edv~~~l~~Ga~~viigt-~~~~~-~~~~~~~~~~~~~-~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 165 (233)
T cd04723 89 SLENAQEWLKRGASRVIVGT-ETLPS-DDDEDRLAALGEQ-RLVLSLDFRGGQLLKPTDFIGPEELLRRLAKWPEELIVL 165 (233)
T ss_pred CHHHHHHHHHcCCCeEEEcc-eeccc-hHHHHHHHhcCCC-CeEEEEeccCCeeccccCcCCHHHHHHHHHHhCCeEEEE
Confidence 36777777888999887764 34444 4566666655542 35555554443 2234444443 4666663
Q ss_pred CCcccccCCC--CCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCH
Q 010211 338 RGDLGAELPI--EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFP 415 (515)
Q Consensus 338 rgDLg~elg~--e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yP 415 (515)
|+..+-.. +.+ ...+++ ++....|++++. +.-+.. |+..+...|+|++++..---.|+++
T Consensus 166 --di~~~G~~~g~~~-~~~~~i---~~~~~ipvi~~G---------Gi~s~e---di~~l~~~G~~~vivGsal~~g~~~ 227 (233)
T cd04723 166 --DIDRVGSGQGPDL-ELLERL---AARADIPVIAAG---------GVRSVE---DLELLKKLGASGALVASALHDGGLT 227 (233)
T ss_pred --EcCccccCCCcCH-HHHHHH---HHhcCCCEEEeC---------CCCCHH---HHHHHHHcCCCEEEEehHHHcCCCC
Confidence 44332111 222 223444 445689999854 444444 4556666799999997555577777
Q ss_pred HHHH
Q 010211 416 LKAV 419 (515)
Q Consensus 416 veaV 419 (515)
.+.+
T Consensus 228 ~~~~ 231 (233)
T cd04723 228 LEDV 231 (233)
T ss_pred HHHH
Confidence 6644
No 267
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=57.00 E-value=1.1e+02 Score=32.80 Aligned_cols=91 Identities=9% Similarity=0.100 Sum_probs=59.3
Q ss_pred hhHH-HhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhh-----------hcHHHHHhh-cCee
Q 010211 268 KDWE-DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSI-----------PNLHSIISA-SDGA 334 (515)
Q Consensus 268 kD~~-dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~av-----------eNldeIl~~-sDgI 334 (515)
.|.+ .++.+.+.|+|.+++. ...++.+......++.+|.|+-....+ -..++-++. +|+|
T Consensus 91 ~dp~~~i~~a~~~g~dAv~~~-------~G~l~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV 163 (348)
T PRK09250 91 FDPENIVKLAIEAGCNAVAST-------LGVLEAVARKYAHKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAV 163 (348)
T ss_pred cCHHHHHHHHHhcCCCEEEeC-------HHHHHhccccccCCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEE
Confidence 3544 5567788899999876 244555444444568899998875544 235665555 6766
Q ss_pred EEcCCcccccCCC---CCHHHHHHHHHHHHHhcCCcEEE
Q 010211 335 MVARGDLGAELPI---EDVPLLQEDIIRRCRSMQKPVIV 370 (515)
Q Consensus 335 mIgrgDLg~elg~---e~v~~aqk~Ii~~c~~aGKPviv 370 (515)
-+. +-+|- .+...-..++++.|++.|.|++.
T Consensus 164 ~~t-----vy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~ 197 (348)
T PRK09250 164 GAT-----IYFGSEESRRQIEEISEAFEEAHELGLATVL 197 (348)
T ss_pred EEE-----EecCCHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 553 11221 24555568899999999999886
No 268
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=56.97 E-value=1.6e+02 Score=27.11 Aligned_cols=129 Identities=16% Similarity=0.088 Sum_probs=0.0
Q ss_pred HhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEc---CCcccccCCC
Q 010211 272 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVA---RGDLGAELPI 347 (515)
Q Consensus 272 dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIg---rgDLg~elg~ 347 (515)
+++.+.+.|+|++-++.-.. ....++... +....+-+-+.|. +.+.+.... +|.|+++ ++.-......
T Consensus 64 ~~~~a~~~g~~~vh~~~~~~--~~~~~~~~~---~~~~~~g~~~~t~---~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~ 135 (196)
T cd00564 64 RVDLALAVGADGVHLGQDDL--PVAEARALL---GPDLIIGVSTHSL---EEALRAEELGADYVGFGPVFPTPTKPGAGP 135 (196)
T ss_pred hHHHHHHcCCCEEecCcccC--CHHHHHHHc---CCCCEEEeeCCCH---HHHHHHhhcCCCEEEECCccCCCCCCCCCC
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHHH
Q 010211 348 EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHT 424 (515)
Q Consensus 348 e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~ 424 (515)
+.-....+++.+. ...|++.+ -...+...+ .+...|+|++.+.+---.-.-|.++++.+.+
T Consensus 136 ~~~~~~~~~~~~~---~~~pv~a~--------GGi~~~~i~-----~~~~~Ga~~i~~g~~i~~~~~~~~~~~~l~~ 196 (196)
T cd00564 136 PLGLELLREIAEL---VEIPVVAI--------GGITPENAA-----EVLAAGADGVAVISAITGADDPAAAARELLA 196 (196)
T ss_pred CCCHHHHHHHHHh---CCCCEEEE--------CCCCHHHHH-----HHHHcCCCEEEEehHhhcCCCHHHHHHHHhC
No 269
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=56.46 E-value=2.5e+02 Score=30.30 Aligned_cols=120 Identities=18% Similarity=0.160 Sum_probs=74.6
Q ss_pred hcchhcCCcEEEec---ccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh--cCeeEEcCCcccc-----
Q 010211 274 KFGVDNQVDFYAVS---FVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA--SDGAMVARGDLGA----- 343 (515)
Q Consensus 274 ~~al~~gvD~ValS---fVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~--sDgImIgrgDLg~----- 343 (515)
...++.|.|.+.-+ ...+++++.++-+.+++.....+|++|+=..-..+.+...++. +|+|.|.=++=+.
T Consensus 177 ~r~~~~g~~~isp~~~~~~~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~ 256 (392)
T cd02808 177 IRGIPPGVDLISPPPHHDIYSIEDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPL 256 (392)
T ss_pred HhCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcc
Confidence 34566677866432 3467777777777777766557888898654234444455544 6999987544222
Q ss_pred ----cCCCCCHHHHHHHHHHHHHhc----CCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 344 ----ELPIEDVPLLQEDIIRRCRSM----QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 344 ----elg~e~v~~aqk~Ii~~c~~a----GKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
+.|++ ...+..++.+.+.+. ..|++.+. +.-+ -.|++.++..|+|++.+.
T Consensus 257 ~~~~~~g~p-t~~~L~~v~~~~~~~~~~~~i~viasG---------GI~~---g~Dv~kalaLGAd~V~ig 314 (392)
T cd02808 257 TFIDHVGLP-TELGLARAHQALVKNGLRDRVSLIASG---------GLRT---GADVAKALALGADAVGIG 314 (392)
T ss_pred cccccCCcc-HHHHHHHHHHHHHHcCCCCCCeEEEEC---------CCCC---HHHHHHHHHcCCCeeeec
Confidence 22333 234556666666554 36666643 3322 358999999999999874
No 270
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=56.09 E-value=82 Score=34.00 Aligned_cols=93 Identities=19% Similarity=0.226 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHH---hh-cCeeEEcCCcccccCC-CCCHHHHHHHHHHHHHhcC
Q 010211 291 DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSII---SA-SDGAMVARGDLGAELP-IEDVPLLQEDIIRRCRSMQ 365 (515)
Q Consensus 291 sa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl---~~-sDgImIgrgDLg~elg-~e~v~~aqk~Ii~~c~~aG 365 (515)
+-+++..+++.. +.+|++| |+.+.++.. +. +|+|.|+--- |-.+. .+.-..+..+|.++. .-.
T Consensus 216 ~w~~i~~l~~~~-----~~PvivK-----Gv~~~eda~~a~~~Gvd~I~VS~HG-Grq~~~~~a~~~~L~ei~~av-~~~ 283 (367)
T TIGR02708 216 SPRDIEEIAGYS-----GLPVYVK-----GPQCPEDADRALKAGASGIWVTNHG-GRQLDGGPAAFDSLQEVAEAV-DKR 283 (367)
T ss_pred CHHHHHHHHHhc-----CCCEEEe-----CCCCHHHHHHHHHcCcCEEEECCcC-ccCCCCCCcHHHHHHHHHHHh-CCC
Confidence 346666666654 4678888 344444333 33 7999886311 22221 111122333333322 123
Q ss_pred CcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecc
Q 010211 366 KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG 407 (515)
Q Consensus 366 KPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ 407 (515)
+|++. ..+.-+ -.|+..++..|+|++|+..
T Consensus 284 i~vi~---------dGGIr~---g~Dv~KaLalGAd~V~igR 313 (367)
T TIGR02708 284 VPIVF---------DSGVRR---GQHVFKALASGADLVALGR 313 (367)
T ss_pred CcEEe---------eCCcCC---HHHHHHHHHcCCCEEEEcH
Confidence 78877 333332 4589999999999999853
No 271
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=55.91 E-value=1.4e+02 Score=29.42 Aligned_cols=125 Identities=14% Similarity=0.201 Sum_probs=77.0
Q ss_pred CHhhH-HHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccc
Q 010211 266 TDKDW-EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGA 343 (515)
Q Consensus 266 tekD~-~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~ 343 (515)
+..+. +.++.+++.|++.+-+.+ +++...+.++.+.++.+.+ ++.=.=|.--.+.++..++. +|+++.+
T Consensus 20 ~~~~~~~~~~a~~~gGi~~iEvt~-~~~~~~~~i~~l~~~~~~~--~~iGaGTV~~~~~~~~a~~aGA~fivsp------ 90 (206)
T PRK09140 20 TPDEALAHVGALIEAGFRAIEIPL-NSPDPFDSIAALVKALGDR--ALIGAGTVLSPEQVDRLADAGGRLIVTP------ 90 (206)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeC-CCccHHHHHHHHHHHcCCC--cEEeEEecCCHHHHHHHHHcCCCEEECC------
Confidence 34444 333566788999998885 7777666677766555433 22333344445566777766 7888763
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHH
Q 010211 344 ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMH 423 (515)
Q Consensus 344 elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~ 423 (515)
..-..+++.|+..|.+++..+ -.| . ++..+...|+|.+-+-. .+..+.+.++.+.
T Consensus 91 --------~~~~~v~~~~~~~~~~~~~G~---------~t~--~---E~~~A~~~Gad~vk~Fp---a~~~G~~~l~~l~ 145 (206)
T PRK09140 91 --------NTDPEVIRRAVALGMVVMPGV---------ATP--T---EAFAALRAGAQALKLFP---ASQLGPAGIKALR 145 (206)
T ss_pred --------CCCHHHHHHHHHCCCcEEccc---------CCH--H---HHHHHHHcCCCEEEECC---CCCCCHHHHHHHH
Confidence 122467788999999998732 233 2 35678889999998732 1233344554444
Q ss_pred H
Q 010211 424 T 424 (515)
Q Consensus 424 ~ 424 (515)
.
T Consensus 146 ~ 146 (206)
T PRK09140 146 A 146 (206)
T ss_pred h
Confidence 3
No 272
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=55.53 E-value=23 Score=37.45 Aligned_cols=48 Identities=23% Similarity=0.332 Sum_probs=41.2
Q ss_pred EEEEecCCCCCCHHHHHHHHHhC--CcEEEEecCCCChHHHHHHHHHHHH
Q 010211 102 KIVCTIGPSTSSREMIWKLAEEG--MNVARLNMSHGDHASHQKTIDLVKE 149 (515)
Q Consensus 102 KIi~TiGPss~~~e~i~~li~aG--m~v~RiN~SHg~~e~~~~~i~~ir~ 149 (515)
-..+.+|-..++.|.+.+|+++| .|+.=+..|||......++++.+|+
T Consensus 84 ~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~ 133 (321)
T TIGR01306 84 FASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKT 133 (321)
T ss_pred EEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHH
Confidence 46778888888899999999999 6999999999988877777777765
No 273
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=55.27 E-value=96 Score=32.23 Aligned_cols=96 Identities=21% Similarity=0.189 Sum_probs=56.0
Q ss_pred HHHHhh-cCeeEEc-CCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHH-HhHHHHHHHhCCc
Q 010211 325 HSIISA-SDGAMVA-RGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE-VSDIAIAVREGAD 401 (515)
Q Consensus 325 deIl~~-sDgImIg-rgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAE-v~DvanaV~~G~D 401 (515)
+..++. +|||++. ---=...|..++-..+.+..++.+ .-.+||++.+ ...+-.| +...-.+-..|+|
T Consensus 36 ~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~-~grvpvi~Gv---------~~~~t~~ai~~a~~A~~~Gad 105 (309)
T cd00952 36 ERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETV-AGRVPVFVGA---------TTLNTRDTIARTRALLDLGAD 105 (309)
T ss_pred HHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHh-CCCCCEEEEe---------ccCCHHHHHHHHHHHHHhCCC
Confidence 444444 8999984 111112223345555555555554 3447877643 3222333 5555666777999
Q ss_pred EEeecccccCCCCHHHHHHHHHHHHHHHh
Q 010211 402 AVMLSGETAHGKFPLKAVKVMHTVALRTE 430 (515)
Q Consensus 402 ~vmLs~ETa~G~yPveaV~~m~~I~~~aE 430 (515)
++|+..=--...-+-+.++..+.|+..++
T Consensus 106 ~vlv~~P~y~~~~~~~l~~yf~~va~a~~ 134 (309)
T cd00952 106 GTMLGRPMWLPLDVDTAVQFYRDVAEAVP 134 (309)
T ss_pred EEEECCCcCCCCCHHHHHHHHHHHHHhCC
Confidence 99987542222224678888999998874
No 274
>PRK00073 pgk phosphoglycerate kinase; Provisional
Probab=55.08 E-value=62 Score=35.21 Aligned_cols=296 Identities=15% Similarity=0.149 Sum_probs=143.8
Q ss_pred HHHHHHHHHhCCcEEEEecCCCC-hHHH--HHHHHHH-HHHHhhcCCceEEEEEecCCCeeeeeccCCcEEEecCCEEEE
Q 010211 114 REMIWKLAEEGMNVARLNMSHGD-HASH--QKTIDLV-KEYNSQFEDKAVAIMLDTKGPEVRSGDVPQPIILKEGQEFNF 189 (515)
Q Consensus 114 ~e~i~~li~aGm~v~RiN~SHg~-~e~~--~~~i~~i-r~~~~~~~~~~i~I~lDL~GPkIRtG~l~~~i~L~~G~~v~l 189 (515)
..+|+.|++.|..|.= +||-. +... .-.++.+ ...++.++ ++|...-|.-||+.+-- --.|++|+.+.|
T Consensus 39 lpTI~~l~~~gakvvl--~sH~gRP~g~~~~~SL~~va~~L~~lL~-~~V~fv~d~~g~~~~~~----i~~l~~G~ilLL 111 (389)
T PRK00073 39 LPTIKYLLEKGAKVIL--LSHLGRPKGEDPEFSLAPVAKRLSELLG-KEVKFVDDCIGEEAREA----IAALKDGEVLLL 111 (389)
T ss_pred HHHHHHHHHCCCeEEE--EEecCCCCCCCCCcCHHHHHHHHHHHhC-CCeEECCCCCCHHHHHH----HhcCCCCcEEEE
Confidence 3488999999987644 47755 2100 0112222 22334455 78877777777765511 135677777776
Q ss_pred EeecCCCCcceEEecccccccccCcCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEeccCceeeeCCCccCCCCCCHhh
Q 010211 190 TIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKD 269 (515)
Q Consensus 190 t~~~~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~~~~~~v~~~V~~gG~L~s~KgVnlpg~~~~lp~ltekD 269 (515)
-.-+....+.. +.++|.+.+.+--.||++|.-=.. -....++ ..+|.
T Consensus 112 EN~Rf~~~E~~---~d~~~a~~LA~l~DiyVNDAFg~a---HR~haS~----------------------vgi~~----- 158 (389)
T PRK00073 112 ENVRFNKGEEK---NDPELAKKLASLGDVFVNDAFGTA---HRAHAST----------------------VGIAK----- 158 (389)
T ss_pred eccCcCccccc---CHHHHHHHHHHhCCEEEECchhhh---hhcccch----------------------hchhh-----
Confidence 54433222211 334566666554447777731100 0000000 00000
Q ss_pred HHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCC-ceEE--EEecChhhhhcHHHHHhhcCeeEEcC--------
Q 010211 270 WEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNAD-IHVI--VKIESADSIPNLHSIISASDGAMVAR-------- 338 (515)
Q Consensus 270 ~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~-i~II--aKIEt~~aveNldeIl~~sDgImIgr-------- 338 (515)
.++.. +. .|. =.+++..+.+.+..-... +.|+ +|+.+.-.+ ++.++..+|.+++|=
T Consensus 159 ------~lp~~--~a--G~l-mekEl~~L~k~l~~p~rP~vaIlGGaKvsdKi~v--i~~Ll~~~D~liigG~ma~tFl~ 225 (389)
T PRK00073 159 ------FLKPA--AA--GFL-MEKELEALGKALENPERPFVAILGGAKVSDKIGV--LENLLEKVDKLIIGGGMANTFLK 225 (389)
T ss_pred ------hCchh--hh--hHH-HHHHHHHHHHHhcCCCCCeEEEEcCccHHhHHHH--HHHHHHhhhhheeChHHHHHHHH
Confidence 00000 00 010 023344444444322111 1222 377765554 777788899999972
Q ss_pred ---CcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCH
Q 010211 339 ---GDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFP 415 (515)
Q Consensus 339 ---gDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yP 415 (515)
.+.|.++--++....-++|++++++.|+.+++-+...-+=.....+. .++ .+ ..+- .|...|- +|.
T Consensus 226 A~G~~ig~sl~e~~~i~~a~~il~~a~~~~~~i~lPvD~vv~~~~~~~~~-~~~-~~-~~ip--~~~~~lD----IGp-- 294 (389)
T PRK00073 226 AQGYNVGKSLVEEDLIDTAKELLEKAKEKGVKIPLPVDVVVAKEFSDAEA-TVV-SV-DEIP--DDWMILD----IGP-- 294 (389)
T ss_pred HcCCCcChhhcchhhHHHHHHHHHHHHhcCCEEECCCeeEEeeccCCCce-EEe-Ec-ccCC--CCCeeee----cCH--
Confidence 24444433356677788999999999998765222111000000000 000 00 1111 1222222 443
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCC-------CCHHHHHHHHhHHhhccC--CChHHHHHHHhcCCCCe
Q 010211 416 LKAVKVMHTVALRTESSLPVSITP-------PTQFSAHKNRIHGSNFKS--LSAFINNLCLHKSLWHE 474 (515)
Q Consensus 416 veaV~~m~~I~~~aE~~~~~~~~~-------~~~~~~ia~~a~a~~v~t--~sG~tA~~iS~~RP~~p 474 (515)
++++...+++.++...+|.-.+. ..-+.+++.+++....+| --|.|+..+.++--.-.
T Consensus 295 -~Ti~~~~~~i~~akti~wNGP~GvfE~~~F~~GT~~l~~aia~~~a~sivGGGdt~aa~~~~g~~~~ 361 (389)
T PRK00073 295 -KTIELFAEIIKDAKTIVWNGPMGVFEFENFAKGTKAVAKAIAESTAFSIIGGGDTAAAVEKLGLADK 361 (389)
T ss_pred -HHHHHHHHHHhhCCEEEEECCCCccccccchHHHHHHHHHHHhcCCeEEEcCCHHHHHHHHcCCCCC
Confidence 78999999999999988864431 122334443333211222 35678887777654333
No 275
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=55.01 E-value=2.1e+02 Score=30.03 Aligned_cols=32 Identities=22% Similarity=0.405 Sum_probs=20.5
Q ss_pred hcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhC-CcEEeec
Q 010211 363 SMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREG-ADAVMLS 406 (515)
Q Consensus 363 ~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G-~D~vmLs 406 (515)
+.+.||++...+ ..|. +...++..| +|.|++.
T Consensus 290 ~v~iPVi~~G~i-------~t~~-----~a~~~l~~g~aD~V~lg 322 (338)
T cd04733 290 VTKTPLMVTGGF-------RTRA-----AMEQALASGAVDGIGLA 322 (338)
T ss_pred HcCCCEEEeCCC-------CCHH-----HHHHHHHcCCCCeeeeC
Confidence 358999885421 1232 344778876 8999985
No 276
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=54.75 E-value=1.8e+02 Score=31.48 Aligned_cols=127 Identities=15% Similarity=0.157 Sum_probs=71.2
Q ss_pred ccCCCCCCHhhH-HHhhcchhcCCcEEEecccC-CHHHHHHHHHHHHhcCCCceEEEEecChh-hhhcHHHHHhh-cCee
Q 010211 259 SANLPSITDKDW-EDIKFGVDNQVDFYAVSFVK-DAKVVHELKDYLKSCNADIHVIVKIESAD-SIPNLHSIISA-SDGA 334 (515)
Q Consensus 259 ~~~lp~ltekD~-~dI~~al~~gvD~ValSfVr-sa~dv~~vr~~l~~~~~~i~IIaKIEt~~-aveNldeIl~~-sDgI 334 (515)
.+-+..++..+. +.++.+++.|+++|-..+-. +.+....++++.+..+ ...++.-+.... +-..++..++. +|++
T Consensus 7 ~~alD~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~~~~~~~~i~~l~~~~~-~~~ii~D~kl~d~g~~~v~~a~~aGAdgV 85 (430)
T PRK07028 7 QVALDLLELDRAVEIAKEAVAGGADWIEAGTPLIKSEGMNAIRTLRKNFP-DHTIVADMKTMDTGAIEVEMAAKAGADIV 85 (430)
T ss_pred EEEeccCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhHHHHHHHHHHCC-CCEEEEEeeeccchHHHHHHHHHcCCCEE
Confidence 334445555555 44466688999999664311 1334455555554432 344554322221 22356666666 8998
Q ss_pred EE-cCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 335 MV-ARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 335 mI-grgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
.+ +-.| + ...+++++.|+++|++++... .+ .++..| .+..+...|+|.+.+.
T Consensus 86 ~v~g~~~--------~--~~~~~~i~~a~~~G~~~~~g~-------~s-~~t~~e--~~~~a~~~GaD~I~~~ 138 (430)
T PRK07028 86 CILGLAD--------D--STIEDAVRAARKYGVRLMADL-------IN-VPDPVK--RAVELEELGVDYINVH 138 (430)
T ss_pred EEecCCC--------h--HHHHHHHHHHHHcCCEEEEEe-------cC-CCCHHH--HHHHHHhcCCCEEEEE
Confidence 86 4222 1 123678899999999998721 11 123222 3456677899999765
No 277
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=54.47 E-value=83 Score=31.84 Aligned_cols=97 Identities=22% Similarity=0.244 Sum_probs=58.5
Q ss_pred HHHHHhh-cCeeEEcCCccc--ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCC
Q 010211 324 LHSIISA-SDGAMVARGDLG--AELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGA 400 (515)
Q Consensus 324 ldeIl~~-sDgImIgrgDLg--~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~ 400 (515)
++-.++. +||+++. |--| ..+..++-..+.+.+.+.+. -..|+++.+ ....++.-+...-.+...|+
T Consensus 27 i~~l~~~Gv~gl~v~-GstGE~~~lt~~Er~~l~~~~~~~~~-~~~~vi~gv--------~~~~~~~~~~~a~~a~~~G~ 96 (284)
T cd00950 27 IEFQIENGTDGLVVC-GTTGESPTLSDEEHEAVIEAVVEAVN-GRVPVIAGT--------GSNNTAEAIELTKRAEKAGA 96 (284)
T ss_pred HHHHHHcCCCEEEEC-CCCcchhhCCHHHHHHHHHHHHHHhC-CCCcEEecc--------CCccHHHHHHHHHHHHHcCC
Confidence 3444444 8999986 3322 22333454555555555442 245666532 22233333666667788899
Q ss_pred cEEeecccccCCCCHHHHHHHHHHHHHHHh
Q 010211 401 DAVMLSGETAHGKFPLKAVKVMHTVALRTE 430 (515)
Q Consensus 401 D~vmLs~ETa~G~yPveaV~~m~~I~~~aE 430 (515)
|++|+..-.-...-+-+.++..+.|+..++
T Consensus 97 d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~ 126 (284)
T cd00950 97 DAALVVTPYYNKPSQEGLYAHFKAIAEATD 126 (284)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHhcCC
Confidence 999998665444456788889999988754
No 278
>PRK08417 dihydroorotase; Provisional
Probab=54.41 E-value=3e+02 Score=29.36 Aligned_cols=102 Identities=8% Similarity=0.144 Sum_probs=53.7
Q ss_pred CCCCHhhHHHh-hcchhcCCcEEEe-----cccCCHHHHHHHHHHHHhc-CCCceEEEEecChhhhhcHHHHHhh-cCee
Q 010211 263 PSITDKDWEDI-KFGVDNQVDFYAV-----SFVKDAKVVHELKDYLKSC-NADIHVIVKIESADSIPNLHSIISA-SDGA 334 (515)
Q Consensus 263 p~ltekD~~dI-~~al~~gvD~Val-----SfVrsa~dv~~vr~~l~~~-~~~i~IIaKIEt~~aveNldeIl~~-sDgI 334 (515)
|..+.+|.+.. +.|+..|+-.|.. |.+.+++.+....+..+.. +.-+....-....+.++.+++..+. ++++
T Consensus 42 ~~~~~e~~~t~s~aA~aGGvTtv~dmpnt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~ 121 (386)
T PRK08417 42 DSLSSKNLKSLENECLKGGVGSIVLYPDSTPAIDNEIALELINSAQRELPMQIFPSIRALDEDGKLSNIATLLKKGAKAL 121 (386)
T ss_pred CCcChhhHHHHHHHHHcCCcEEEEeCCCCCCCCCCHHHHHHHHHHhhccCCcEEEEEEEECCCccHHHHHHHHHCCCEEE
Confidence 44444444333 4556678876654 2344445555544444321 1112222222344446566665543 5666
Q ss_pred EEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEec
Q 010211 335 MVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATN 373 (515)
Q Consensus 335 mIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATq 373 (515)
.+. + + .-.....++++.+++.|+|+.+..+
T Consensus 122 k~~-~------~--~~~~~l~~~~~~a~~~g~~V~~HaE 151 (386)
T PRK08417 122 ELS-S------D--LDANLLKVIAQYAKMLDVPIFCRCE 151 (386)
T ss_pred ECC-C------C--CCHHHHHHHHHHHHHcCCEEEEeCC
Confidence 542 1 1 2244667788889999999988653
No 279
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=54.27 E-value=65 Score=32.36 Aligned_cols=66 Identities=20% Similarity=0.287 Sum_probs=46.9
Q ss_pred HHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEe
Q 010211 296 HELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVAT 372 (515)
Q Consensus 296 ~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivAT 372 (515)
..+++.+.+.|.++.|-+--+..+. +|++++++-.|.|+-+- +-+.....+-+.|.++++|++.+.
T Consensus 81 ~~a~~~l~~inp~v~i~~~~~~i~~-~~~~~~~~~~DlVvd~~----------D~~~~r~~ln~~~~~~~ip~v~~~ 146 (240)
T TIGR02355 81 ESAKDALTQINPHIAINPINAKLDD-AELAALIAEHDIVVDCT----------DNVEVRNQLNRQCFAAKVPLVSGA 146 (240)
T ss_pred HHHHHHHHHHCCCcEEEEEeccCCH-HHHHHHhhcCCEEEEcC----------CCHHHHHHHHHHHHHcCCCEEEEE
Confidence 3456777777888777665444333 57888888888888762 224567778899999999999864
No 280
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=54.26 E-value=87 Score=31.54 Aligned_cols=95 Identities=23% Similarity=0.242 Sum_probs=54.6
Q ss_pred HHHHhh-cCeeEEcCCccc--ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhH-HHHHHHhCC
Q 010211 325 HSIISA-SDGAMVARGDLG--AELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSD-IAIAVREGA 400 (515)
Q Consensus 325 deIl~~-sDgImIgrgDLg--~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~D-vanaV~~G~ 400 (515)
+..++. +|||++. |--| ..+..++-..+.+.+++.+. -..|+++. ....+-.|..+ ...+-..|+
T Consensus 25 ~~l~~~Gv~gi~~~-GstGE~~~ls~~Er~~l~~~~~~~~~-~~~~vi~g---------v~~~~~~~~i~~a~~a~~~Ga 93 (281)
T cd00408 25 EFLIEAGVDGLVVL-GTTGEAPTLTDEERKEVIEAVVEAVA-GRVPVIAG---------VGANSTREAIELARHAEEAGA 93 (281)
T ss_pred HHHHHcCCCEEEEC-CCCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEe---------cCCccHHHHHHHHHHHHHcCC
Confidence 333443 8999875 2211 22222444444555555443 24677763 34555556444 445556699
Q ss_pred cEEeecccccCCCCHHHHHHHHHHHHHHHh
Q 010211 401 DAVMLSGETAHGKFPLKAVKVMHTVALRTE 430 (515)
Q Consensus 401 D~vmLs~ETa~G~yPveaV~~m~~I~~~aE 430 (515)
|++|+..=.-...-+-+.++....|+....
T Consensus 94 d~v~v~pP~y~~~~~~~~~~~~~~ia~~~~ 123 (281)
T cd00408 94 DGVLVVPPYYNKPSQEGIVAHFKAVADASD 123 (281)
T ss_pred CEEEECCCcCCCCCHHHHHHHHHHHHhcCC
Confidence 999997543333345788888999988754
No 281
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=54.23 E-value=2e+02 Score=29.74 Aligned_cols=133 Identities=15% Similarity=0.184 Sum_probs=78.5
Q ss_pred CCCCCHhhHHHhhcchhcCCcEEEeccc-------------CCHHHHHHHHHHHHhcCCCceEEEEe------cChhhhh
Q 010211 262 LPSITDKDWEDIKFGVDNQVDFYAVSFV-------------KDAKVVHELKDYLKSCNADIHVIVKI------ESADSIP 322 (515)
Q Consensus 262 lp~ltekD~~dI~~al~~gvD~ValSfV-------------rsa~dv~~vr~~l~~~~~~i~IIaKI------Et~~ave 322 (515)
+-.+|-+|.--.+.+-+.|+|.|.++=. -+-++...--+.+.+...+..|++-+ .-.++++
T Consensus 17 i~m~tayD~~sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~DmPf~sy~~~e~a~~ 96 (263)
T TIGR00222 17 IVAITAYDYSFAKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTDLPFMSYATPEQALK 96 (263)
T ss_pred EEEEeccCHHHHHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeCCCcCCCCCHHHHHH
Confidence 4456778876666666789998876400 11122211122233333455666322 2447999
Q ss_pred cHHHHHhh--cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEE-------EEecccc-ccccCCCcChHH--Hh
Q 010211 323 NLHSIISA--SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVI-------VATNMLE-SMIDHPTPTRAE--VS 390 (515)
Q Consensus 323 NldeIl~~--sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvi-------vATqmLe-SMi~~~~PtrAE--v~ 390 (515)
|...+++. +|+|=|--| ..+...+++..+.|.||. .....+- -.+....+.+++ +.
T Consensus 97 na~rl~~eaGa~aVkiEgg------------~~~~~~i~~l~~~gIpV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~i~ 164 (263)
T TIGR00222 97 NAARVMQETGANAVKLEGG------------EWLVETVQMLTERGVPVVGHLGLTPQSVNILGGYKVQGKDEEAAKKLLE 164 (263)
T ss_pred HHHHHHHHhCCeEEEEcCc------------HhHHHHHHHHHHCCCCEEEecCCCceeEeecCCeeecCCCHHHHHHHHH
Confidence 99999984 788887532 223455688999999998 3222222 122222333444 66
Q ss_pred HHHHHHHhCCcEEeec
Q 010211 391 DIAIAVREGADAVMLS 406 (515)
Q Consensus 391 DvanaV~~G~D~vmLs 406 (515)
|.-.+...|+|+++|-
T Consensus 165 ~A~a~e~AGA~~ivlE 180 (263)
T TIGR00222 165 DALALEEAGAQLLVLE 180 (263)
T ss_pred HHHHHHHcCCCEEEEc
Confidence 6667778999999994
No 282
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=54.22 E-value=23 Score=33.89 Aligned_cols=63 Identities=21% Similarity=0.267 Sum_probs=46.1
Q ss_pred HHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhh--hcHHHHHhh-cCeeEEc
Q 010211 270 WEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSI--PNLHSIISA-SDGAMVA 337 (515)
Q Consensus 270 ~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~av--eNldeIl~~-sDgImIg 337 (515)
.+.+..+++.|+|+|.+=.. ++++++++.+.+...+.+ ++||---|+ +|+.++++. +|+|.+|
T Consensus 90 ~ee~~ea~~~g~d~I~lD~~-~~~~~~~~v~~l~~~~~~----v~ie~SGGI~~~ni~~ya~~gvD~isvg 155 (169)
T PF01729_consen 90 LEEAEEALEAGADIIMLDNM-SPEDLKEAVEELRELNPR----VKIEASGGITLENIAEYAKTGVDVISVG 155 (169)
T ss_dssp HHHHHHHHHTT-SEEEEES--CHHHHHHHHHHHHHHTTT----SEEEEESSSSTTTHHHHHHTT-SEEEEC
T ss_pred HHHHHHHHHhCCCEEEecCc-CHHHHHHHHHHHhhcCCc----EEEEEECCCCHHHHHHHHhcCCCEEEcC
Confidence 34566678899999998754 789999988888777777 455544444 588998888 7999987
No 283
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=54.16 E-value=1.3e+02 Score=30.49 Aligned_cols=97 Identities=16% Similarity=0.149 Sum_probs=57.7
Q ss_pred HHhhcchhcCCcEEEec------ccCCHHHHHHH-HHHHHhcCCCceEEEEecC---hhhhhcHHHHHhh-cCeeEEcCC
Q 010211 271 EDIKFGVDNQVDFYAVS------FVKDAKVVHEL-KDYLKSCNADIHVIVKIES---ADSIPNLHSIISA-SDGAMVARG 339 (515)
Q Consensus 271 ~dI~~al~~gvD~ValS------fVrsa~dv~~v-r~~l~~~~~~i~IIaKIEt---~~aveNldeIl~~-sDgImIgrg 339 (515)
+.+++.++.|+|++.+. +.-+.++-.++ +..++..+.++.||+.+-. .++++.....-+. +|++|+.+-
T Consensus 26 ~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P 105 (289)
T PF00701_consen 26 RLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPP 105 (289)
T ss_dssp HHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEES
T ss_pred HHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEecc
Confidence 55678889999998773 11223333332 3334556778999998854 4555555554444 899998754
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 010211 340 DLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (515)
Q Consensus 340 DLg~elg~e~v~~aqk~Ii~~c~~aGKPvivA 371 (515)
... ...-..+.+..-..|.+.++|+++.
T Consensus 106 ~~~----~~s~~~l~~y~~~ia~~~~~pi~iY 133 (289)
T PF00701_consen 106 YYF----KPSQEELIDYFRAIADATDLPIIIY 133 (289)
T ss_dssp TSS----SCCHHHHHHHHHHHHHHSSSEEEEE
T ss_pred ccc----cchhhHHHHHHHHHHhhcCCCEEEE
Confidence 332 1223334455555567788999985
No 284
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=54.03 E-value=2.3e+02 Score=30.24 Aligned_cols=94 Identities=19% Similarity=0.238 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh----cCeeEEcCCcccccCC-CCCHHHHHHHHHHHHHhc
Q 010211 290 KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLGAELP-IEDVPLLQEDIIRRCRSM 364 (515)
Q Consensus 290 rsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~----sDgImIgrgDLg~elg-~e~v~~aqk~Ii~~c~~a 364 (515)
.+.+++..+++.. +.+|++| ++.+.+++... +|+|.|. +--|..+. ......+..++.+..++.
T Consensus 200 ~~~~~i~~l~~~~-----~~PvivK-----gv~~~~dA~~a~~~G~d~I~vs-nhgG~~~d~~~~~~~~L~~i~~~~~~~ 268 (344)
T cd02922 200 LTWDDIKWLRKHT-----KLPIVLK-----GVQTVEDAVLAAEYGVDGIVLS-NHGGRQLDTAPAPIEVLLEIRKHCPEV 268 (344)
T ss_pred CCHHHHHHHHHhc-----CCcEEEE-----cCCCHHHHHHHHHcCCCEEEEE-CCCcccCCCCCCHHHHHHHHHHHHHHh
Confidence 4556666666543 5678888 33455555443 7998876 22233332 122334555565554443
Q ss_pred --CCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 365 --QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 365 --GKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
..|+|... +.-+ -.|++.++..|+|++++.
T Consensus 269 ~~~~~vi~~G---------GIr~---G~Dv~kalaLGA~aV~iG 300 (344)
T cd02922 269 FDKIEVYVDG---------GVRR---GTDVLKALCLGAKAVGLG 300 (344)
T ss_pred CCCceEEEeC---------CCCC---HHHHHHHHHcCCCEEEEC
Confidence 36777642 3322 468999999999999974
No 285
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=53.97 E-value=63 Score=31.36 Aligned_cols=66 Identities=23% Similarity=0.238 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEe
Q 010211 296 HELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVAT 372 (515)
Q Consensus 296 ~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivAT 372 (515)
..+.+.+.+.|.++.+-+.-+.... +|++++++-.|.|+.+-. -+..+..+-+.|+++++|++.+.
T Consensus 78 ~~~~~~l~~~np~v~i~~~~~~i~~-~~~~~~~~~~D~Vi~~~d----------~~~~r~~l~~~~~~~~ip~i~~~ 143 (202)
T TIGR02356 78 EVAAQRLRELNSDIQVTALKERVTA-ENLELLINNVDLVLDCTD----------NFATRYLINDACVALGTPLISAA 143 (202)
T ss_pred HHHHHHHHHhCCCCEEEEehhcCCH-HHHHHHHhCCCEEEECCC----------CHHHHHHHHHHHHHcCCCEEEEE
Confidence 3455667777777666554444333 578888888898887622 23567788899999999998753
No 286
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=53.92 E-value=76 Score=33.90 Aligned_cols=82 Identities=24% Similarity=0.288 Sum_probs=53.7
Q ss_pred hhhhhcHHHHHhh-cCeeEEcCCcccccCCCC--CHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHH--HhHH
Q 010211 318 ADSIPNLHSIISA-SDGAMVARGDLGAELPIE--DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE--VSDI 392 (515)
Q Consensus 318 ~~aveNldeIl~~-sDgImIgrgDLg~elg~e--~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAE--v~Dv 392 (515)
+..++.+...++. +|+|.+|=-+.+.-.... ...+ .+++++.|+++||-+.++.+++= .+..-+ ...+
T Consensus 13 ag~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~-l~e~i~~ah~~gkk~~V~~N~~~------~~~~~~~~~~~l 85 (347)
T COG0826 13 AGNLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVED-LAEAVELAHSAGKKVYVAVNTLL------HNDELETLERYL 85 (347)
T ss_pred CCCHHHHHHHHHcCCCEEEeCCcccccccccccCCHHH-HHHHHHHHHHcCCeEEEEecccc------ccchhhHHHHHH
Confidence 3345555555555 899999954565544331 2223 68899999999999988754221 122222 3456
Q ss_pred HHHHHhCCcEEeec
Q 010211 393 AIAVREGADAVMLS 406 (515)
Q Consensus 393 anaV~~G~D~vmLs 406 (515)
..++..|+|++.++
T Consensus 86 ~~l~e~GvDaviv~ 99 (347)
T COG0826 86 DRLVELGVDAVIVA 99 (347)
T ss_pred HHHHHcCCCEEEEc
Confidence 77888999999986
No 287
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=53.68 E-value=2.1e+02 Score=30.30 Aligned_cols=125 Identities=15% Similarity=0.198 Sum_probs=63.8
Q ss_pred CCCCHhhHHHh--------hcchhcCCcEEEecccC-------------CH------------HHHHHHHHHHHh-cCCC
Q 010211 263 PSITDKDWEDI--------KFGVDNQVDFYAVSFVK-------------DA------------KVVHELKDYLKS-CNAD 308 (515)
Q Consensus 263 p~ltekD~~dI--------~~al~~gvD~ValSfVr-------------sa------------~dv~~vr~~l~~-~~~~ 308 (515)
..+|..|++.+ +.+.+.|+|+|-+.+.. .. .-+.++-+-+++ .+.+
T Consensus 140 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d 219 (338)
T cd02933 140 RALTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGAD 219 (338)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCC
Confidence 35788888766 23456799999664322 21 112222222322 3555
Q ss_pred ceEEEEecChhh---------hhcHHHHHhh-----cCeeEEcCCcccccCCCCCHHHHHHHHHHH-HHhcCCcEEEEec
Q 010211 309 IHVIVKIESADS---------IPNLHSIISA-----SDGAMVARGDLGAELPIEDVPLLQEDIIRR-CRSMQKPVIVATN 373 (515)
Q Consensus 309 i~IIaKIEt~~a---------veNldeIl~~-----sDgImIgrgDLg~elg~e~v~~aqk~Ii~~-c~~aGKPvivATq 373 (515)
.|..||-..+. .+..-+|++. +|.|=|..|......+ .......+. .+..++||+....
T Consensus 220 -~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~-----~~~~~~~~~ik~~~~ipvi~~G~ 293 (338)
T cd02933 220 -RVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNPE-----DQPPDFLDFLRKAFKGPLIAAGG 293 (338)
T ss_pred -ceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCccc-----ccchHHHHHHHHHcCCCEEEECC
Confidence 48889854321 1222233332 5888776554332211 111122222 2234789988542
Q ss_pred cccccccCCCcChHHHhHHHHHHHhC-CcEEeec
Q 010211 374 MLESMIDHPTPTRAEVSDIAIAVREG-ADAVMLS 406 (515)
Q Consensus 374 mLeSMi~~~~PtrAEv~DvanaV~~G-~D~vmLs 406 (515)
-.|..+| .++..| +|.|++.
T Consensus 294 --------i~~~~a~-----~~l~~g~~D~V~~g 314 (338)
T cd02933 294 --------YDAESAE-----AALADGKADLVAFG 314 (338)
T ss_pred --------CCHHHHH-----HHHHcCCCCEEEeC
Confidence 1244444 777766 9999985
No 288
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=53.43 E-value=2.6e+02 Score=28.45 Aligned_cols=170 Identities=17% Similarity=0.151 Sum_probs=93.7
Q ss_pred CceeeeCCCccCCCCCCHhhHHHh-hcchhcCCcEEEecc-cCCHHHHHHHHHHHHhcCCCceEEEEecC-hhhhh----
Q 010211 250 RRHLNVRGKSANLPSITDKDWEDI-KFGVDNQVDFYAVSF-VKDAKVVHELKDYLKSCNADIHVIVKIES-ADSIP---- 322 (515)
Q Consensus 250 ~KgVnlpg~~~~lp~ltekD~~dI-~~al~~gvD~ValSf-Vrsa~dv~~vr~~l~~~~~~i~IIaKIEt-~~ave---- 322 (515)
|-|-..++.. ++..++..+ +.-.+.|+|.|=+.| .-++.++..++...+..-.+..+.+..-. ..++.
T Consensus 7 RDG~Q~~~~~-----~s~e~k~~i~~~L~~~Gv~~IE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (273)
T cd07941 7 RDGTQGEGIS-----FSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEED 81 (273)
T ss_pred CCcCCCCCCC-----CCHHHHHHHHHHHHHcCCCEEEecCCcCCHHHHHHHHHHHHcCCCCcEEEEEecccccCCCccch
Confidence 3344455443 355666555 444578999987744 34677776665443332123444433211 11221
Q ss_pred -cHHHHHhh-cCeeEEc--CCccc----ccCCCCCHHHHHHHHHHHHHhcCCcEEEE-eccccccccCCCcChHHHhHHH
Q 010211 323 -NLHSIISA-SDGAMVA--RGDLG----AELPIEDVPLLQEDIIRRCRSMQKPVIVA-TNMLESMIDHPTPTRAEVSDIA 393 (515)
Q Consensus 323 -NldeIl~~-sDgImIg--rgDLg----~elg~e~v~~aqk~Ii~~c~~aGKPvivA-TqmLeSMi~~~~PtrAEv~Dva 393 (515)
.++..++. .|.|.+- ..|+- ..+..++.....++.++.++++|..|.+. +.+.+ ..+-+...+.+.+
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d----~~~~~~~~~~~~~ 157 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFD----GYKANPEYALATL 157 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccc----cCCCCHHHHHHHH
Confidence 23344444 5655442 22321 11223567777789999999999987652 11111 1121223344444
Q ss_pred H-HHHhCCcEEeecccccCCCCHHHHHHHHHHHHHHH
Q 010211 394 I-AVREGADAVMLSGETAHGKFPLKAVKVMHTVALRT 429 (515)
Q Consensus 394 n-aV~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~a 429 (515)
. +...|+|.+.|. +|.=...|.+.-+.+..+..+.
T Consensus 158 ~~~~~~g~~~i~l~-DT~G~~~P~~v~~lv~~l~~~~ 193 (273)
T cd07941 158 KAAAEAGADWLVLC-DTNGGTLPHEIAEIVKEVRERL 193 (273)
T ss_pred HHHHhCCCCEEEEe-cCCCCCCHHHHHHHHHHHHHhC
Confidence 3 345699998874 8887889988877777776554
No 289
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=53.30 E-value=27 Score=38.58 Aligned_cols=110 Identities=17% Similarity=0.200 Sum_probs=62.1
Q ss_pred hhHHHhhcchhcCCcEEEecccCCHHHH----HHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh---cCeeEEcCCc
Q 010211 268 KDWEDIKFGVDNQVDFYAVSFVKDAKVV----HELKDYLKSCNADIHVIVKIESADSIPNLHSIISA---SDGAMVARGD 340 (515)
Q Consensus 268 kD~~dI~~al~~gvD~ValSfVrsa~dv----~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~---sDgImIgrgD 340 (515)
++.++++.+++.|++.|++.. |+-.+. ..-.+++....+++.+|+ |+ |+.+.+++... +||++||-.-
T Consensus 167 h~~~El~~al~~~a~iiGiNn-RdL~t~~vd~~~~~~l~~~ip~~~~~vs--eS--GI~t~~d~~~~~~~~davLiG~~l 241 (454)
T PRK09427 167 SNEEELERAIALGAKVIGINN-RNLRDLSIDLNRTRELAPLIPADVIVIS--ES--GIYTHAQVRELSPFANGFLIGSSL 241 (454)
T ss_pred CCHHHHHHHHhCCCCEEEEeC-CCCccceECHHHHHHHHhhCCCCcEEEE--eC--CCCCHHHHHHHHhcCCEEEECHHH
Confidence 566778888899999998863 333322 122222322234555554 33 66665555443 8999999554
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEee
Q 010211 341 LGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 405 (515)
Q Consensus 341 Lg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmL 405 (515)
+.. ++.....++++. ..=|-+|+. + ..|+..+...|+|++=+
T Consensus 242 m~~----~d~~~~~~~L~~---~~vKICGit--------------~--~eda~~a~~~GaD~lGf 283 (454)
T PRK09427 242 MAE----DDLELAVRKLIL---GENKVCGLT--------------R--PQDAKAAYDAGAVYGGL 283 (454)
T ss_pred cCC----CCHHHHHHHHhc---cccccCCCC--------------C--HHHHHHHHhCCCCEEee
Confidence 433 344445555533 223555552 1 23555777888887644
No 290
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=53.01 E-value=40 Score=34.57 Aligned_cols=73 Identities=21% Similarity=0.205 Sum_probs=45.1
Q ss_pred hcCCcEEEecccCC--HHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcC-----CcccccCCCCCH
Q 010211 278 DNQVDFYAVSFVKD--AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVAR-----GDLGAELPIEDV 350 (515)
Q Consensus 278 ~~gvD~ValSfVrs--a~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgr-----gDLg~elg~e~v 350 (515)
..++|+|++|=-.+ +.+...+++.-+..+ ++|+ |=|---.+|+.++++.+||++||- |+..-.+..+++
T Consensus 170 ~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~--~PVl--vGSGvt~~Ni~~~l~~ADG~IVGS~~K~~G~~~n~VD~~Rv 245 (254)
T PF03437_consen 170 RGGADAVIVTGKATGEPPDPEKLKRVREAVP--VPVL--VGSGVTPENIAEYLSYADGAIVGSYFKKDGKWENPVDPERV 245 (254)
T ss_pred hcCCCEEEECCcccCCCCCHHHHHHHHhcCC--CCEE--EecCCCHHHHHHHHHhCCEEEEeeeeeeCCEeCCcCCHHHH
Confidence 45899999986654 224443333322222 5555 456666789999999999999994 344444444444
Q ss_pred HHHH
Q 010211 351 PLLQ 354 (515)
Q Consensus 351 ~~aq 354 (515)
....
T Consensus 246 ~~fm 249 (254)
T PF03437_consen 246 RRFM 249 (254)
T ss_pred HHHH
Confidence 4433
No 291
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=52.90 E-value=1.9e+02 Score=31.01 Aligned_cols=148 Identities=11% Similarity=0.176 Sum_probs=80.6
Q ss_pred CCHhhHHH-hhcchhcCCcEEEe-------cccCCHHHHHHHHHHHHhcC----CCceEEEEe--cChhhhhcHHHHHhh
Q 010211 265 ITDKDWED-IKFGVDNQVDFYAV-------SFVKDAKVVHELKDYLKSCN----ADIHVIVKI--ESADSIPNLHSIISA 330 (515)
Q Consensus 265 ltekD~~d-I~~al~~gvD~Val-------SfVrsa~dv~~vr~~l~~~~----~~i~IIaKI--Et~~aveNldeIl~~ 330 (515)
|+.+.... +.+.++.|+|+|.. +|....+-+..+++.++.++ +...+++-| ++.+.+++.+...+.
T Consensus 143 ld~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~nit~~~~e~i~~a~~a~~~ 222 (367)
T cd08205 143 LSPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNITGDPDELRRRADRAVEA 222 (367)
T ss_pred CCHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCCCHHHHHHHHHHHHHc
Confidence 34455433 34556789998843 45555566666666665544 666777777 456777777777777
Q ss_pred -cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHH--HhHHHHHHHhCCcEEeecc
Q 010211 331 -SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE--VSDIAIAVREGADAVMLSG 407 (515)
Q Consensus 331 -sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAE--v~DvanaV~~G~D~vmLs~ 407 (515)
+|++|+.+.- .|+.. ++.+.+ ..+.|+...-.+.-.|..++.---.. ...++. +.|+|.+...
T Consensus 223 Gad~vmv~~~~----~g~~~----~~~l~~---~~~lpi~~H~a~~ga~~~~~~~g~~~~~~~kl~R--laGad~~~~~- 288 (367)
T cd08205 223 GANALLINPNL----VGLDA----LRALAE---DPDLPIMAHPAFAGALSRSPDYGSHFLLLGKLMR--LAGADAVIFP- 288 (367)
T ss_pred CCCEEEEeccc----ccccH----HHHHHh---cCCCeEEEccCcccccccCCCCcCCHHHHHHHHH--HcCCCccccC-
Confidence 8999998652 23222 222222 23777665444433443332210011 222222 3588988775
Q ss_pred cccCCCCHHHHHHHHHHHHHH
Q 010211 408 ETAHGKFPLKAVKVMHTVALR 428 (515)
Q Consensus 408 ETa~G~yPveaV~~m~~I~~~ 428 (515)
|..|+|+.. .+...++++.
T Consensus 289 -~~~gk~~~~-~~~~~~la~~ 307 (367)
T cd08205 289 -GPGGRFPFS-REECLAIARA 307 (367)
T ss_pred -CCccCcCCC-HHHHHHHHHH
Confidence 457786532 3333444443
No 292
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=52.89 E-value=27 Score=34.16 Aligned_cols=42 Identities=10% Similarity=0.121 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhh
Q 010211 112 SSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQ 153 (515)
Q Consensus 112 ~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~ 153 (515)
+-.+.|.+|.++|++.|||.+-.-+.++..++++.-|++-..
T Consensus 157 ~l~~~l~~L~~~Gv~~~rI~~r~~~~~~~~~iv~~Y~~~l~~ 198 (233)
T PF01136_consen 157 CLLDELPELKDAGVDSFRIDGRTESPEYIEEIVKAYREALDN 198 (233)
T ss_pred hHHHHHHHHHHcCCCEEEEcCccCCHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999987654
No 293
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=52.85 E-value=1.7e+02 Score=30.90 Aligned_cols=87 Identities=16% Similarity=0.194 Sum_probs=42.8
Q ss_pred CCceEEEEecChhh------hhcHHHHHh----h-cCeeEEcCCcccccCCC--CCHHHHHHHHHHHHHhcCCcEEEEec
Q 010211 307 ADIHVIVKIESADS------IPNLHSIIS----A-SDGAMVARGDLGAELPI--EDVPLLQEDIIRRCRSMQKPVIVATN 373 (515)
Q Consensus 307 ~~i~IIaKIEt~~a------veNldeIl~----~-sDgImIgrgDLg~elg~--e~v~~aqk~Ii~~c~~aGKPvivATq 373 (515)
.+..|-.+|--.+. .+..-+|++ . +|.|=|..|.....-.. ..-....+.+ +++...++||+...
T Consensus 214 ~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~i-k~~~~~~iPVi~~G- 291 (353)
T cd04735 214 KDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELV-KERIAGRLPLIAVG- 291 (353)
T ss_pred CCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHH-HHHhCCCCCEEEEC-
Confidence 56677777753221 222223333 2 68888877654321111 1111122222 22222378988742
Q ss_pred cccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 374 MLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 374 mLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
..-+.+ +...++..|+|+|++.
T Consensus 292 --------gi~t~e---~ae~~l~~gaD~V~~g 313 (353)
T cd04735 292 --------SINTPD---DALEALETGADLVAIG 313 (353)
T ss_pred --------CCCCHH---HHHHHHHcCCChHHHh
Confidence 222222 2336677799999875
No 294
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=52.72 E-value=2.5e+02 Score=28.00 Aligned_cols=131 Identities=17% Similarity=0.202 Sum_probs=67.0
Q ss_pred hHHHhhcchhcCCcEEEecc--cCCHHHHHHHHHHHHhcC-CCceEEE-------------Eec------ChhhhhcHHH
Q 010211 269 DWEDIKFGVDNQVDFYAVSF--VKDAKVVHELKDYLKSCN-ADIHVIV-------------KIE------SADSIPNLHS 326 (515)
Q Consensus 269 D~~dI~~al~~gvD~ValSf--Vrsa~dv~~vr~~l~~~~-~~i~IIa-------------KIE------t~~aveNlde 326 (515)
+.+|++..+..|+|.|.++- .++++.+.++.+.+ + +++.+-. ++- ....++-+++
T Consensus 85 s~~~~~~~l~~Ga~~Viigt~~l~~p~~~~ei~~~~---g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 161 (253)
T PRK02083 85 SVEDARRLLRAGADKVSINSAAVANPELISEAADRF---GSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKE 161 (253)
T ss_pred CHHHHHHHHHcCCCEEEEChhHhhCcHHHHHHHHHc---CCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHH
Confidence 44556555667899887753 34555555554443 2 2222211 111 0111222233
Q ss_pred HHhh-cCeeEEcCCcc-cccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHH-hCCcEE
Q 010211 327 IISA-SDGAMVARGDL-GAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVR-EGADAV 403 (515)
Q Consensus 327 Il~~-sDgImIgrgDL-g~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~-~G~D~v 403 (515)
+.+. +|.+++-.-+= |..-|+ ++ .. +-+.++..+.|++.+. +.-+ ..|+..+.. .|+|++
T Consensus 162 ~~~~g~~~ii~~~i~~~g~~~g~-d~-~~---i~~~~~~~~ipvia~G---------Gv~s---~~d~~~~~~~~G~~gv 224 (253)
T PRK02083 162 VEELGAGEILLTSMDRDGTKNGY-DL-EL---TRAVSDAVNVPVIASG---------GAGN---LEHFVEAFTEGGADAA 224 (253)
T ss_pred HHHcCCCEEEEcCCcCCCCCCCc-CH-HH---HHHHHhhCCCCEEEEC---------CCCC---HHHHHHHHHhCCccEE
Confidence 3333 67776642221 222233 22 22 2333455689999854 3444 345656665 599999
Q ss_pred eecccccCCCCHHHHH
Q 010211 404 MLSGETAHGKFPLKAV 419 (515)
Q Consensus 404 mLs~ETa~G~yPveaV 419 (515)
|...==-.|.++.+.+
T Consensus 225 ivg~al~~~~~~~~~~ 240 (253)
T PRK02083 225 LAASIFHFGEITIGEL 240 (253)
T ss_pred eEhHHHHcCCCCHHHH
Confidence 9864444688877654
No 295
>PRK08185 hypothetical protein; Provisional
Probab=52.51 E-value=1.9e+02 Score=30.12 Aligned_cols=119 Identities=14% Similarity=0.255 Sum_probs=81.1
Q ss_pred CCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccc----cccC
Q 010211 307 ADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLES----MIDH 381 (515)
Q Consensus 307 ~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeS----Mi~~ 381 (515)
..++|...+....-++.+..-++. .+.||+---+| ++++-...-+++++.|+++|.+|=.-=-.+-. ....
T Consensus 67 ~~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~D~S~l----~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~ 142 (283)
T PRK08185 67 SPVPFVIHLDHGATIEDVMRAIRCGFTSVMIDGSLL----PYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGG 142 (283)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCC----CHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccc
Confidence 468899999998877777666666 78899985555 77888889999999999999998211011100 0000
Q ss_pred CCc-ChHHHhHHHHHHHh-CCcEEeecccccCCCCHH-----HHHHHHHHHHHHH
Q 010211 382 PTP-TRAEVSDIAIAVRE-GADAVMLSGETAHGKFPL-----KAVKVMHTVALRT 429 (515)
Q Consensus 382 ~~P-trAEv~DvanaV~~-G~D~vmLs~ETa~G~yPv-----eaV~~m~~I~~~a 429 (515)
... ......+...++.. |+|++-.+--|+.|.||- --...+.+|....
T Consensus 143 ~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~ 197 (283)
T PRK08185 143 VSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERV 197 (283)
T ss_pred cccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhh
Confidence 000 00123344678877 999999999999999964 3466777776654
No 296
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=52.46 E-value=97 Score=33.38 Aligned_cols=94 Identities=24% Similarity=0.332 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEE
Q 010211 291 DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVI 369 (515)
Q Consensus 291 sa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvi 369 (515)
+-+++..+++.. +.++|.| +- .-.++....++. +|+|.|+=.- |-. ++..+.....+.+.+...+.||+
T Consensus 224 ~w~~i~~ir~~~-----~~pviiK-gV-~~~eda~~a~~~G~d~I~VSnhG-Grq--ld~~~~~~~~L~ei~~~~~~~vi 293 (361)
T cd04736 224 NWQDLRWLRDLW-----PHKLLVK-GI-VTAEDAKRCIELGADGVILSNHG-GRQ--LDDAIAPIEALAEIVAATYKPVL 293 (361)
T ss_pred CHHHHHHHHHhC-----CCCEEEe-cC-CCHHHHHHHHHCCcCEEEECCCC-cCC--CcCCccHHHHHHHHHHHhCCeEE
Confidence 345777777654 2356665 21 222233333333 8999885100 111 12212223333333444578888
Q ss_pred EEeccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 370 VATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 370 vATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
. ..+.-+ -.|++.++..|+|++|+-
T Consensus 294 ~---------dGGIr~---g~Dv~KALaLGA~aV~iG 318 (361)
T cd04736 294 I---------DSGIRR---GSDIVKALALGANAVLLG 318 (361)
T ss_pred E---------eCCCCC---HHHHHHHHHcCCCEEEEC
Confidence 7 334433 458999999999999974
No 297
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=52.41 E-value=79 Score=30.67 Aligned_cols=66 Identities=14% Similarity=0.203 Sum_probs=48.3
Q ss_pred HHHHHHHhcCCCceEEEEecChhh-hhcHHHHHhhcCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEe
Q 010211 297 ELKDYLKSCNADIHVIVKIESADS-IPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVAT 372 (515)
Q Consensus 297 ~vr~~l~~~~~~i~IIaKIEt~~a-veNldeIl~~sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivAT 372 (515)
.+++.+++.|.++.+.+.-|.... .++.++++.-.|.|+.+-. . ......+-+.|+++++|++.+.
T Consensus 79 ~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d---------~-~~~~~~ln~~c~~~~ip~i~~~ 145 (198)
T cd01485 79 ASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEE---------N-YERTAKVNDVCRKHHIPFISCA 145 (198)
T ss_pred HHHHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCC---------C-HHHHHHHHHHHHHcCCCEEEEE
Confidence 456778888998888776665532 4577888887898887622 2 4466678899999999998763
No 298
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=52.40 E-value=2e+02 Score=29.93 Aligned_cols=67 Identities=15% Similarity=0.213 Sum_probs=39.4
Q ss_pred HHhhcchhcCCcEEEe------------------cccCCHHHHHHHHHHHHh-cCCCceEEEEecCh-------hhhhcH
Q 010211 271 EDIKFGVDNQVDFYAV------------------SFVKDAKVVHELKDYLKS-CNADIHVIVKIESA-------DSIPNL 324 (515)
Q Consensus 271 ~dI~~al~~gvD~Val------------------SfVrsa~dv~~vr~~l~~-~~~~i~IIaKIEt~-------~aveNl 324 (515)
+.++...+.|+.+|.+ ..+...+.+..++..... .+.++.|+|..|.. ++++..
T Consensus 96 r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra 175 (285)
T TIGR02320 96 RLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRA 175 (285)
T ss_pred HHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHH
Confidence 3344445677777776 222333334455555544 36679999997765 344444
Q ss_pred HHHHhh-cCeeEEc
Q 010211 325 HSIISA-SDGAMVA 337 (515)
Q Consensus 325 deIl~~-sDgImIg 337 (515)
..-.+. +|+||+-
T Consensus 176 ~ay~eAGAD~ifv~ 189 (285)
T TIGR02320 176 EAYAEAGADGIMIH 189 (285)
T ss_pred HHHHHcCCCEEEec
Confidence 444444 8999994
No 299
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=52.36 E-value=3e+02 Score=28.83 Aligned_cols=106 Identities=20% Similarity=0.233 Sum_probs=61.0
Q ss_pred CceEEEEecChhhhhcHHHHHhh-----cCeeEEc-CC-cccccC------------CCCCHHHHHHHHHHHHHhcCCcE
Q 010211 308 DIHVIVKIESADSIPNLHSIISA-----SDGAMVA-RG-DLGAEL------------PIEDVPLLQEDIIRRCRSMQKPV 368 (515)
Q Consensus 308 ~i~IIaKIEt~~aveNldeIl~~-----sDgImIg-rg-DLg~el------------g~e~v~~aqk~Ii~~c~~aGKPv 368 (515)
+++|++|+- + .+.++.++++. +|||.+. |. ...+++ |....+.+.+.+-+..+....|+
T Consensus 163 ~iPv~vKl~-p-~~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipI 240 (325)
T cd04739 163 TIPVAVKLS-P-FFSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASL 240 (325)
T ss_pred CCCEEEEcC-C-CccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCE
Confidence 589999984 3 24566666664 6888663 32 011110 11233445555555556667887
Q ss_pred EEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccC-CCCHHHHHHHHHHHHHHHhcCC
Q 010211 369 IVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAH-GKFPLKAVKVMHTVALRTESSL 433 (515)
Q Consensus 369 ivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~-G~yPveaV~~m~~I~~~aE~~~ 433 (515)
+-. .+.-+ ..|+..++..|+|+|++...--. | | ..+.+|+++.+..+
T Consensus 241 ig~---------GGI~s---~~Da~e~l~aGA~~Vqv~ta~~~~g--p----~~~~~i~~~L~~~l 288 (325)
T cd04739 241 AAS---------GGVHD---AEDVVKYLLAGADVVMTTSALLRHG--P----DYIGTLLAGLEAWM 288 (325)
T ss_pred EEE---------CCCCC---HHHHHHHHHcCCCeeEEehhhhhcC--c----hHHHHHHHHHHHHH
Confidence 753 23333 34788999999999999733222 3 2 24556666666543
No 300
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=52.31 E-value=87 Score=30.38 Aligned_cols=65 Identities=14% Similarity=0.131 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEe
Q 010211 296 HELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVAT 372 (515)
Q Consensus 296 ~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivAT 372 (515)
..+++.+.+.|.++.+-+.-+... ++.++.+.-.|.|+.+..+ ......+-+.|+++|+|++.+.
T Consensus 78 ~a~~~~L~~lNp~v~i~~~~~~~~--~~~~~~~~~~dvVi~~~~~----------~~~~~~ln~~c~~~~ip~i~~~ 142 (197)
T cd01492 78 EASLERLRALNPRVKVSVDTDDIS--EKPEEFFSQFDVVVATELS----------RAELVKINELCRKLGVKFYATG 142 (197)
T ss_pred HHHHHHHHHHCCCCEEEEEecCcc--ccHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEEE
Confidence 346777888888887665545443 5567777778988876332 3567778889999999998753
No 301
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=52.03 E-value=1.1e+02 Score=31.32 Aligned_cols=93 Identities=16% Similarity=0.068 Sum_probs=50.6
Q ss_pred HHhhcchhcCCcEEEec------ccCCHHHHHHHH-HHHHhcCCCceEEEEec---ChhhhhcHHHHHhh-cCeeEEcCC
Q 010211 271 EDIKFGVDNQVDFYAVS------FVKDAKVVHELK-DYLKSCNADIHVIVKIE---SADSIPNLHSIISA-SDGAMVARG 339 (515)
Q Consensus 271 ~dI~~al~~gvD~ValS------fVrsa~dv~~vr-~~l~~~~~~i~IIaKIE---t~~aveNldeIl~~-sDgImIgrg 339 (515)
+.++|.++.|+|+|.+. +.=+.++-.++- ...+..+ . |++.+- |.++++-...--+. +|++|+.+-
T Consensus 24 ~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~-~--vi~gvg~~~~~~ai~~a~~a~~~Gad~v~v~~P 100 (279)
T cd00953 24 KHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITD-K--VIFQVGSLNLEESIELARAAKSFGIYAIASLPP 100 (279)
T ss_pred HHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcC-C--EEEEeCcCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 44577788999998762 223444444443 3334333 3 677775 33444444443333 799998654
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 010211 340 DLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (515)
Q Consensus 340 DLg~elg~e~v~~aqk~Ii~~c~~aGKPvivA 371 (515)
.......-+.+....+.|.+ +.|+++.
T Consensus 101 ~y~~~~~~~~i~~yf~~v~~-----~lpv~iY 127 (279)
T cd00953 101 YYFPGIPEEWLIKYFTDISS-----PYPTFIY 127 (279)
T ss_pred cCCCCCCHHHHHHHHHHHHh-----cCCEEEE
Confidence 43211112334444455544 7899884
No 302
>PRK13308 ureC urease subunit alpha; Reviewed
Probab=51.97 E-value=4.2e+02 Score=30.44 Aligned_cols=131 Identities=14% Similarity=0.109 Sum_probs=76.4
Q ss_pred hcchhcCCcEEEe----c----ccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCccccc
Q 010211 274 KFGVDNQVDFYAV----S----FVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAE 344 (515)
Q Consensus 274 ~~al~~gvD~Val----S----fVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~e 344 (515)
+.++..|+--+.. | -+..++.+..+.+..+...-+.....+.-+ ...+.+.+.++. +.|+-+- .|.
T Consensus 149 ~aALagGVTTVi~gg~gPt~p~~t~g~~~i~~~l~aa~~~pvN~g~~gkG~~-s~~aeL~eli~aGA~GfKi~-ed~--- 223 (569)
T PRK13308 149 DHALASGITTMLGGGLGPTVGIDSGGPFNTGRMLQAAEAWPVNFGFLGRGNS-SKPAALIEQVEAGACGLKIH-EDW--- 223 (569)
T ss_pred HHHHcCCCcEEecCCcCCCCCCCCCCHHHHHHHHHHHhcCCccEEEEcCCcc-cCHHHHHHHHHCCCCEEeec-CCC---
Confidence 5566778877663 2 244566666655544433334455555432 234455555544 5555543 222
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHH
Q 010211 345 LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKV 421 (515)
Q Consensus 345 lg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~ 421 (515)
| .-+....++++.|.+.|++|.+.+.-|+.- .-+.+ ..+-..|...-+.=-|.|-|-+--+.+++
T Consensus 224 -g--~t~~~i~~aL~~A~~~dv~VaiHadtlne~--------g~~E~-t~~a~~gr~iH~~H~egaggghapd~l~~ 288 (569)
T PRK13308 224 -G--AMPAAIDTCLEVADEYDFQVQLHTDTLNES--------GFVED-TLAAIGGRTIHMYHTEGAGGGHAPDIIRV 288 (569)
T ss_pred -C--CCHHHHHHHHHHHHhcCCEEEEeCCCcCcc--------hHHHH-HHHHhcCCeEEEEeccCCccCchhHHHHH
Confidence 2 245778889999999999999977544421 22445 34444588877777777877774344433
No 303
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=51.83 E-value=1.9e+02 Score=31.51 Aligned_cols=48 Identities=21% Similarity=0.242 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhc-CCcEEEEeccccccccCCCcChHHHhHHHH-HHHhCCcEEeecc
Q 010211 350 VPLLQEDIIRRCRSM-QKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAVMLSG 407 (515)
Q Consensus 350 v~~aqk~Ii~~c~~a-GKPvivATqmLeSMi~~~~PtrAEv~Dvan-aV~~G~D~vmLs~ 407 (515)
-++..++|++.++++ .+|+++ + -.|.-.++.+++. +...|+|++.+.+
T Consensus 166 ~~e~~~~i~~~Vk~~~~iPv~v---------K-LsPn~t~i~~ia~aa~~~Gadgi~liN 215 (385)
T PLN02495 166 DCDLLEEVCGWINAKATVPVWA---------K-MTPNITDITQPARVALKSGCEGVAAIN 215 (385)
T ss_pred CHHHHHHHHHHHHHhhcCceEE---------E-eCCChhhHHHHHHHHHHhCCCEEEEec
Confidence 467778888887764 688887 2 2355555777776 5667899988754
No 304
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=51.52 E-value=54 Score=33.68 Aligned_cols=72 Identities=22% Similarity=0.207 Sum_probs=46.8
Q ss_pred CCHhhHHH-hhcchhcC-CcEEEecccCCH--HHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCC
Q 010211 265 ITDKDWED-IKFGVDNQ-VDFYAVSFVKDA--KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARG 339 (515)
Q Consensus 265 ltekD~~d-I~~al~~g-vD~ValSfVrsa--~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrg 339 (515)
|.+.+.++ ++.+...+ +|+|+++=..+. -|+..++.+-+.. .++++ -|=+--..+|+.++++.+||+.||-+
T Consensus 154 l~~~~~~e~a~~~~~~~~aDavivtG~~TG~~~d~~~l~~vr~~~-~~~Pv--llggGvt~eNv~e~l~~adGviVgS~ 229 (257)
T TIGR00259 154 LGNRDLESIALDTVERGLADAVILSGKTTGTEVDLELLKLAKETV-KDTPV--LAGSGVNLENVEELLSIADGVIVATT 229 (257)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEECcCCCCCCCCHHHHHHHHhcc-CCCeE--EEECCCCHHHHHHHHhhCCEEEECCC
Confidence 44555533 45555565 999999876555 4566666543322 23333 23366678899999999999999854
No 305
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=51.33 E-value=98 Score=30.96 Aligned_cols=97 Identities=26% Similarity=0.233 Sum_probs=52.3
Q ss_pred ccCCHHHHHHHHHHHHhcCCCceEEEEecCh---hhhhcHHHHHhh-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHh
Q 010211 288 FVKDAKVVHELKDYLKSCNADIHVIVKIESA---DSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRS 363 (515)
Q Consensus 288 fVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~---~aveNldeIl~~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~ 363 (515)
..++++.+.++-+.+.+. ++.|.+||=.- +.++-...+.+. +|+|-+--+.-+ +..++ +.++..+
T Consensus 121 Ll~~p~~l~eiv~avr~~--~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~~~~g---~~ad~-----~~I~~i~- 189 (233)
T cd02911 121 LLKDPERLSEFIKALKET--GVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDAMDPG---NHADL-----KKIRDIS- 189 (233)
T ss_pred HcCCHHHHHHHHHHHHhc--CCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECcCCCC---CCCcH-----HHHHHhc-
Confidence 445666666655556543 68899999421 222222222222 787765322211 11122 2333333
Q ss_pred cCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecc
Q 010211 364 MQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG 407 (515)
Q Consensus 364 aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ 407 (515)
.++|+|. .+..-+. .|...++..|+|+||+..
T Consensus 190 ~~ipVIg---------nGgI~s~---eda~~~l~~GaD~VmiGR 221 (233)
T cd02911 190 TELFIIG---------NNSVTTI---ESAKEMFSYGADMVSVAR 221 (233)
T ss_pred CCCEEEE---------ECCcCCH---HHHHHHHHcCCCEEEEcC
Confidence 5788876 3444333 456677888999999963
No 306
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=51.09 E-value=1e+02 Score=34.17 Aligned_cols=134 Identities=12% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh----cCeeEEcCC-------
Q 010211 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARG------- 339 (515)
Q Consensus 271 ~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~----sDgImIgrg------- 339 (515)
.+++.|++.|+|+|-++ ..--....+|..+ +....|=+ +..|.+|+..+ .|.|.+||-
T Consensus 268 D~~dlAl~~gAdGVHLG--QeDL~~~~aR~il---g~~~iIGv------StHs~eEl~~A~~~gaDYI~lGPIFpT~TK~ 336 (437)
T PRK12290 268 DYWQLAIKHQAYGVHLG--QEDLEEANLAQLT---DAGIRLGL------STHGYYELLRIVQIQPSYIALGHIFPTTTKQ 336 (437)
T ss_pred CHHHHHHHcCCCEEEcC--hHHcchhhhhhhc---CCCCEEEE------ecCCHHHHHHHhhcCCCEEEECCccCCCCCC
Q ss_pred cccccCCCCCHHHHHHHH--HHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHH
Q 010211 340 DLGAELPIEDVPLLQEDI--IRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLK 417 (515)
Q Consensus 340 DLg~elg~e~v~~aqk~I--i~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPve 417 (515)
+-..-+|++.+..+++.+ +..++..++|++. +-.-.+.+.. .....|+|++-..+.-..-..|.+
T Consensus 337 ~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVA--------IGGI~~~Ni~-----~vl~aGa~GVAVVSAI~~A~DP~a 403 (437)
T PRK12290 337 MPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVA--------IGGIDQSNAE-----QVWQCGVSSLAVVRAITLAEDPQL 403 (437)
T ss_pred CCCCCCCHHHHHHHHHHhhhccccccCCCCEEE--------ECCcCHHHHH-----HHHHcCCCEEEEehHhhcCCCHHH
Q ss_pred HHHHHHHHHHH
Q 010211 418 AVKVMHTVALR 428 (515)
Q Consensus 418 aV~~m~~I~~~ 428 (515)
+++.+.++...
T Consensus 404 a~~~l~~~~~~ 414 (437)
T PRK12290 404 VIEFFDQVMAE 414 (437)
T ss_pred HHHHHHHHHhh
No 307
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=50.60 E-value=1.8e+02 Score=27.51 Aligned_cols=130 Identities=15% Similarity=0.066 Sum_probs=0.0
Q ss_pred HhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCCH
Q 010211 272 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDV 350 (515)
Q Consensus 272 dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e~v 350 (515)
+++.+.+.|+|+|-++ ...-+...++..+ +....+-+-+-|. +.+.+..+. +|.+++++--=+..=+-..-
T Consensus 65 ~~~la~~~g~~GvHl~--~~~~~~~~~r~~~---~~~~~ig~s~h~~---~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~ 136 (196)
T TIGR00693 65 RVDLALALGADGVHLG--QDDLPASEARALL---GPDKIIGVSTHNL---EELAEAEAEGADYIGFGPIFPTPTKKDPAP 136 (196)
T ss_pred HHHHHHHcCCCEEecC--cccCCHHHHHHhc---CCCCEEEEeCCCH---HHHHHHhHcCCCEEEECCccCCCCCCCCCC
Q ss_pred HHHHHHHHHHHHhcC-CcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHH
Q 010211 351 PLLQEDIIRRCRSMQ-KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVM 422 (515)
Q Consensus 351 ~~aqk~Ii~~c~~aG-KPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m 422 (515)
+.-.+.+-+.++... +|++.. -...+.... .+...|+|++.+.+.-..-+-|.++++.|
T Consensus 137 ~~g~~~l~~~~~~~~~~pv~a~--------GGI~~~~~~-----~~~~~G~~gva~~~~i~~~~dp~~~~~~l 196 (196)
T TIGR00693 137 PAGVELLREIAATSIDIPIVAI--------GGITLENAA-----EVLAAGADGVAVVSAIMQAADPKAAAKQL 196 (196)
T ss_pred CCCHHHHHHHHHhcCCCCEEEE--------CCcCHHHHH-----HHHHcCCCEEEEhHHhhCCCCHHHHHHhC
No 308
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=50.51 E-value=2.2e+02 Score=29.64 Aligned_cols=119 Identities=16% Similarity=0.243 Sum_probs=78.5
Q ss_pred CCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEE-Eeccc--cccccCC
Q 010211 307 ADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIV-ATNML--ESMIDHP 382 (515)
Q Consensus 307 ~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPviv-ATqmL--eSMi~~~ 382 (515)
.+++|.........++.+..-+.. .+.||+.-. .+++++=...-+++++.|+++|..|=. -.++- |.-+...
T Consensus 72 ~~vPValHLDH~~~~e~i~~ai~~GftSVM~DgS----~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~ 147 (287)
T PF01116_consen 72 ASVPVALHLDHGKDFEDIKRAIDAGFTSVMIDGS----ALPFEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESE 147 (287)
T ss_dssp STSEEEEEEEEE-SHHHHHHHHHHTSSEEEEE-T----TS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSS
T ss_pred cCCCEEeecccCCCHHHHHHHHHhCcccccccCC----cCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCcccc
Confidence 369999999998887777666666 899999744 457788888899999999999988832 11221 1111111
Q ss_pred Cc---ChHHHhHHHHHH-HhCCcEEeecccccCCCCHH-----HHHHHHHHHHHHH
Q 010211 383 TP---TRAEVSDIAIAV-REGADAVMLSGETAHGKFPL-----KAVKVMHTVALRT 429 (515)
Q Consensus 383 ~P---trAEv~DvanaV-~~G~D~vmLs~ETa~G~yPv-----eaV~~m~~I~~~a 429 (515)
.- ...+-.++..++ .-|+|++-.+--|+.|.|+- --...+.+|.+.+
T Consensus 148 ~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~ 203 (287)
T PF01116_consen 148 EETESLYTDPEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAV 203 (287)
T ss_dssp TT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhc
Confidence 00 001123445665 67999999999999999987 3467788887777
No 309
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=50.39 E-value=2.3e+02 Score=27.57 Aligned_cols=110 Identities=15% Similarity=0.132 Sum_probs=62.6
Q ss_pred hHHHh-hcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEE--E--ecChh-----hhhcHHHHHhh-cCeeEEc
Q 010211 269 DWEDI-KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIV--K--IESAD-----SIPNLHSIISA-SDGAMVA 337 (515)
Q Consensus 269 D~~dI-~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIa--K--IEt~~-----aveNldeIl~~-sDgImIg 337 (515)
+.+.+ +.+.+.|+..+ + +.+.++++.+++. .++.++. + .+..+ -.+.++...+. +|.|.+.
T Consensus 28 ~i~~~a~~~~~~G~~~~--~-~~~~~~~~~i~~~-----~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~ 99 (219)
T cd04729 28 IMAAMALAAVQGGAVGI--R-ANGVEDIRAIRAR-----VDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALD 99 (219)
T ss_pred HHHHHHHHHHHCCCeEE--E-cCCHHHHHHHHHh-----CCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEe
Confidence 44444 45677899865 4 4788888877764 2345542 1 11111 13355555555 7888775
Q ss_pred CCcccccCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEee
Q 010211 338 RGDLGAELPIEDVPLLQEDIIRRCRSMQ-KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 405 (515)
Q Consensus 338 rgDLg~elg~e~v~~aqk~Ii~~c~~aG-KPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmL 405 (515)
-.++.. +.. ...+++++.++++| +|+++. ..|..| ...+...|+|.+..
T Consensus 100 ~~~~~~--p~~---~~~~~~i~~~~~~g~~~iiv~-----------v~t~~e---a~~a~~~G~d~i~~ 149 (219)
T cd04729 100 ATDRPR--PDG---ETLAELIKRIHEEYNCLLMAD-----------ISTLEE---ALNAAKLGFDIIGT 149 (219)
T ss_pred CCCCCC--CCC---cCHHHHHHHHHHHhCCeEEEE-----------CCCHHH---HHHHHHcCCCEEEc
Confidence 333321 110 14457788888888 777763 123333 35677789999865
No 310
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=50.29 E-value=79 Score=35.80 Aligned_cols=163 Identities=17% Similarity=0.231 Sum_probs=91.1
Q ss_pred eeeeCCCccCCCCCCHhhH-HHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh
Q 010211 252 HLNVRGKSANLPSITDKDW-EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA 330 (515)
Q Consensus 252 gVnlpg~~~~lp~ltekD~-~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~ 330 (515)
.+++|=+.+.+ |-.|+ +.|..+-..+-.+-.++|-+....+..+.+++ +-++.++.=-...++-.-+.++-+.
T Consensus 81 ~~~iPVv~i~~---s~~Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l---~~~i~~~~~~~~~e~~~~v~~lk~~ 154 (538)
T PRK15424 81 RLSVPVILIKP---SGFDVMQALARARKLTSSIGVVTYQETIPALVAFQKTF---NLRIEQRSYVTEEDARGQINELKAN 154 (538)
T ss_pred hCCCCEEEecC---CHhHHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHh---CCceEEEEecCHHHHHHHHHHHHHC
Confidence 47788777654 66775 67777777777777788877777777787777 4566665544444555555665554
Q ss_pred -cCeeEEcCC---cccccCCC--------CCHHHHHHHHHHHHHhcCCcE--------EEEeccccccccCCCcChHHHh
Q 010211 331 -SDGAMVARG---DLGAELPI--------EDVPLLQEDIIRRCRSMQKPV--------IVATNMLESMIDHPTPTRAEVS 390 (515)
Q Consensus 331 -sDgImIgrg---DLg~elg~--------e~v~~aqk~Ii~~c~~aGKPv--------ivATqmLeSMi~~~~PtrAEv~ 390 (515)
.+. +||.+ |++.++|+ +.+..+.++.++.++.....- ..+..-++.|+.. .|.-.++-
T Consensus 155 G~~~-vvG~~~~~~~A~~~g~~g~~~~s~e~i~~a~~~A~~~~~~~~~~~~~~~~~~~~~~~~~f~~iiG~-S~~m~~~~ 232 (538)
T PRK15424 155 GIEA-VVGAGLITDLAEEAGMTGIFIYSAATVRQAFEDALDMTRMTLRHNTHYATRNALRTRYVLGDLLGQ-SPQMEQVR 232 (538)
T ss_pred CCCE-EEcCchHHHHHHHhCCceEEecCHHHHHHHHHHHHHHHHHHhhhhhccchhhhhccccchhheeeC-CHHHHHHH
Confidence 443 34543 56666665 345555555554433211110 0111123333332 23222333
Q ss_pred HHHHHHHhCCcEEeecccccCCCCHHHHHHHHHH
Q 010211 391 DIAIAVREGADAVMLSGETAHGKFPLKAVKVMHT 424 (515)
Q Consensus 391 DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~ 424 (515)
.-+..+...---||+.||+-.||- ...+.++.
T Consensus 233 ~~i~~~A~s~~pVLI~GE~GTGKe--~~A~~IH~ 264 (538)
T PRK15424 233 QTILLYARSSAAVLIQGETGTGKE--LAAQAIHR 264 (538)
T ss_pred HHHHHHhCCCCcEEEECCCCCCHH--HHHHHHHH
Confidence 333444444557999999999995 33444444
No 311
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=50.21 E-value=1.3e+02 Score=30.77 Aligned_cols=117 Identities=19% Similarity=0.206 Sum_probs=66.8
Q ss_pred HHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeE--EcCCcccccCCC-
Q 010211 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAM--VARGDLGAELPI- 347 (515)
Q Consensus 271 ~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgIm--IgrgDLg~elg~- 347 (515)
+-++.+.+.|+|++.++=.. .++..++.+.+++.|-+ .|.-+=.-.--+.+..|.+.+.|.+ +++ .|+ .|.
T Consensus 108 ~f~~~~~~aGvdGviipDLp-~ee~~~~~~~~~~~gl~--~I~lvap~t~~eri~~i~~~s~gfIY~vs~--~Gv-TG~~ 181 (258)
T PRK13111 108 RFAADAAEAGVDGLIIPDLP-PEEAEELRAAAKKHGLD--LIFLVAPTTTDERLKKIASHASGFVYYVSR--AGV-TGAR 181 (258)
T ss_pred HHHHHHHHcCCcEEEECCCC-HHHHHHHHHHHHHcCCc--EEEEeCCCCCHHHHHHHHHhCCCcEEEEeC--CCC-CCcc
Confidence 34566678899999987543 45566666666665543 3333322223567888888877754 444 222 232
Q ss_pred CCHHHHHHHHHHHHHh-cCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 348 EDVPLLQEDIIRRCRS-MQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 348 e~v~~aqk~Ii~~c~~-aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
...+......++.+++ .++|+++. .+.-+..++. .+. .++|++..-
T Consensus 182 ~~~~~~~~~~i~~vk~~~~~pv~vG---------fGI~~~e~v~---~~~-~~ADGviVG 228 (258)
T PRK13111 182 SADAADLAELVARLKAHTDLPVAVG---------FGISTPEQAA---AIA-AVADGVIVG 228 (258)
T ss_pred cCCCccHHHHHHHHHhcCCCcEEEE---------cccCCHHHHH---HHH-HhCCEEEEc
Confidence 1233344455555554 48999884 3555555444 333 358888863
No 312
>PTZ00344 pyridoxal kinase; Provisional
Probab=50.13 E-value=1.1e+02 Score=31.33 Aligned_cols=111 Identities=12% Similarity=0.151 Sum_probs=70.3
Q ss_pred CCCCCCHhhHHHhhcch-----hcCCcEEEecccCCHHHHHHHHHHHHhc---CCCceEEEE---------ecChhhhhc
Q 010211 261 NLPSITDKDWEDIKFGV-----DNQVDFYAVSFVKDAKVVHELKDYLKSC---NADIHVIVK---------IESADSIPN 323 (515)
Q Consensus 261 ~lp~ltekD~~dI~~al-----~~gvD~ValSfVrsa~dv~~vr~~l~~~---~~~i~IIaK---------IEt~~aveN 323 (515)
..|.+++++.+++...+ ....|.|...|+-+++.+..+.+++++. +.++.++.= .-..+..+.
T Consensus 53 ~g~~i~~~~~~~~l~~l~~~~~~~~~~~v~sG~l~~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~ 132 (296)
T PTZ00344 53 KGHRLDLNELITLMDGLRANNLLSDYTYVLTGYINSADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYVKEEVVDA 132 (296)
T ss_pred cCeeCCHHHHHHHHHHHHhcCCcccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEeCHHHHHH
Confidence 34567777776664433 3367899999999999999998888642 323344432 234566667
Q ss_pred HHHHHhhcCeeEEcCCcccccCCCC--CHHHHHHHHHHHHHhcCCcEEEEe
Q 010211 324 LHSIISASDGAMVARGDLGAELPIE--DVPLLQEDIIRRCRSMQKPVIVAT 372 (515)
Q Consensus 324 ldeIl~~sDgImIgrgDLg~elg~e--~v~~aqk~Ii~~c~~aGKPvivAT 372 (515)
+.+++..+|.+....-++..=.|.+ .... .++..++..+.|...++.|
T Consensus 133 ~~~ll~~~dii~pN~~E~~~L~g~~~~~~~~-~~~~~~~l~~~g~~~VvVT 182 (296)
T PTZ00344 133 YRELIPYADVITPNQFEASLLSGVEVKDLSD-ALEAIDWFHEQGIPVVVIT 182 (296)
T ss_pred HHHHhhhCCEEeCCHHHHHHHhCCCCCCHHH-HHHHHHHHHHhCCCEEEEE
Confidence 7788888999998887776555542 2222 2334444445576655444
No 313
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=50.03 E-value=77 Score=26.46 Aligned_cols=51 Identities=24% Similarity=0.304 Sum_probs=40.0
Q ss_pred CCCCCHHHHHH-HHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEEec
Q 010211 109 PSTSSREMIWK-LAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDT 165 (515)
Q Consensus 109 Pss~~~e~i~~-li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~I~lDL 165 (515)
-.+.+-|.+.. +-..|+.+.|-.=++|......++++.+++ | ..++|-.|-
T Consensus 17 S~s~DGe~ia~~~~~~G~~~iRGSs~rgg~~Alr~~~~~lk~-----G-~~~~itpDG 68 (74)
T PF04028_consen 17 SRSRDGELIARVLERFGFRTIRGSSSRGGARALREMLRALKE-----G-YSIAITPDG 68 (74)
T ss_pred ccCcCHHHHHHHHHHcCCCeEEeCCCCcHHHHHHHHHHHHHC-----C-CeEEEeCCC
Confidence 34567777777 556899999999999988888888777763 3 788998883
No 314
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=49.79 E-value=11 Score=27.88 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=19.4
Q ss_pred CcEEEEecC-CCChHHHHHHHHHHH
Q 010211 125 MNVARLNMS-HGDHASHQKTIDLVK 148 (515)
Q Consensus 125 m~v~RiN~S-Hg~~e~~~~~i~~ir 148 (515)
|.|.+++|| |++.++..++++.++
T Consensus 7 a~v~~~~fSgHad~~~L~~~i~~~~ 31 (43)
T PF07521_consen 7 ARVEQIDFSGHADREELLEFIEQLN 31 (43)
T ss_dssp SEEEESGCSSS-BHHHHHHHHHHHC
T ss_pred EEEEEEeecCCCCHHHHHHHHHhcC
Confidence 678999998 999998888888764
No 315
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=49.73 E-value=3.3e+02 Score=28.81 Aligned_cols=136 Identities=18% Similarity=0.157 Sum_probs=74.2
Q ss_pred HHHhhcchhcCCcEEEecccCC-HHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-----cCeeEEcCCcccc
Q 010211 270 WEDIKFGVDNQVDFYAVSFVKD-AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-----SDGAMVARGDLGA 343 (515)
Q Consensus 270 ~~dI~~al~~gvD~ValSfVrs-a~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-----sDgImIgrgDLg~ 343 (515)
.++++.+.+.|+|+|-+.+--+ ++.+.+.-++.++.|.++.+...--+....+.+.++++. +|.|.+. |
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~--D--- 165 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVV--D--- 165 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeC--C---
Confidence 4678888899999987764333 333344445566666654443333233333334443332 5666664 3
Q ss_pred cCCCCCHHHHHHHHHHHHHhc---CCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEe---ec-ccccCCCCHH
Q 010211 344 ELPIEDVPLLQEDIIRRCRSM---QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVM---LS-GETAHGKFPL 416 (515)
Q Consensus 344 elg~e~v~~aqk~Ii~~c~~a---GKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vm---Ls-~ETa~G~yPv 416 (515)
+.|. -.|.-..+++++.++. +.|+++.+ ++ ...-|- .-...|+..|+|.+= .- |+ ..|+=|+
T Consensus 166 T~G~-~~P~~v~~~v~~l~~~l~~~i~ig~H~-------Hn-nlGla~-ANslaAi~aGa~~iD~Sl~GlG~-~aGN~~t 234 (337)
T PRK08195 166 SAGA-LLPEDVRDRVRALRAALKPDTQVGFHG-------HN-NLGLGV-ANSLAAVEAGATRIDGSLAGLGA-GAGNTPL 234 (337)
T ss_pred CCCC-CCHHHHHHHHHHHHHhcCCCCeEEEEe-------CC-CcchHH-HHHHHHHHhCCCEEEecChhhcc-cccCccH
Confidence 2332 3444555566665544 58888876 32 233332 223356777876432 21 34 5689999
Q ss_pred HHHHH
Q 010211 417 KAVKV 421 (515)
Q Consensus 417 eaV~~ 421 (515)
|.+-.
T Consensus 235 E~lv~ 239 (337)
T PRK08195 235 EVLVA 239 (337)
T ss_pred HHHHH
Confidence 98654
No 316
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=49.63 E-value=48 Score=33.76 Aligned_cols=88 Identities=20% Similarity=0.364 Sum_probs=51.8
Q ss_pred EEEecChhhhhcHHHHHhh-----cCeeEEcCCcccccCCCCCHHHHHHHHHHHHH-hcCCcEEEEeccccccccCCCcC
Q 010211 312 IVKIESADSIPNLHSIISA-----SDGAMVARGDLGAELPIEDVPLLQEDIIRRCR-SMQKPVIVATNMLESMIDHPTPT 385 (515)
Q Consensus 312 IaKIEt~~aveNldeIl~~-----sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~-~aGKPvivATqmLeSMi~~~~Pt 385 (515)
+.||.=.+- ++.++|++. .|+|||| |-++++ .....+.+++++ +.+.|++. + |.
T Consensus 19 ~tliDP~k~-~~~~ei~~~~~~~GTDaImIG-GS~gvt------~~~~~~~v~~ik~~~~lPvil---------f---P~ 78 (240)
T COG1646 19 LTLIDPDKT-EEADEIAEAAAEAGTDAIMIG-GSDGVT------EENVDNVVEAIKERTDLPVIL---------F---PG 78 (240)
T ss_pred EEEeCcccc-cccHHHHHHHHHcCCCEEEEC-Cccccc------HHHHHHHHHHHHhhcCCCEEE---------e---cC
Confidence 456643332 666666665 7999999 433332 134456677777 99999998 2 32
Q ss_pred hHHHhHHHHHHHhCCcEEe----eccccc---CCCCHHHHHHHHHHHH
Q 010211 386 RAEVSDIAIAVREGADAVM----LSGETA---HGKFPLKAVKVMHTVA 426 (515)
Q Consensus 386 rAEv~DvanaV~~G~D~vm----Ls~ETa---~G~yPveaV~~m~~I~ 426 (515)
-- +.+..++|+++ |++.-. +|. .+++++...++-
T Consensus 79 ~~------~~is~~aDavff~svLNS~n~~~i~ga-q~~~a~~~~~~~ 119 (240)
T COG1646 79 SP------SGISPYADAVFFPSVLNSDNPYWIVGA-QVEGAKLVGKLG 119 (240)
T ss_pred Ch------hccCccCCeEEEEEEecCCCcccccch-hhhhhHHHHhhh
Confidence 22 23555788876 333322 443 456666666665
No 317
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=49.61 E-value=2.6e+02 Score=27.37 Aligned_cols=132 Identities=17% Similarity=0.196 Sum_probs=64.9
Q ss_pred hhHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecCh---------------hhhhcHHHHHhh-c
Q 010211 268 KDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESA---------------DSIPNLHSIISA-S 331 (515)
Q Consensus 268 kD~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~---------------~aveNldeIl~~-s 331 (515)
++.++++.+++.|+|.|.++-. ..++...+.+.....+.+- +++-|... .-++-..++... +
T Consensus 86 ~~~~~~~~~~~~Ga~~v~iGs~-~~~~~~~~~~i~~~~g~~~-i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~ 163 (241)
T PRK13585 86 RSAEDAASLLDLGVDRVILGTA-AVENPEIVRELSEEFGSER-VMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGA 163 (241)
T ss_pred CCHHHHHHHHHcCCCEEEEChH-HhhChHHHHHHHHHhCCCc-EEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCC
Confidence 3567777777889999877532 1222223344443333321 22222210 112222222222 6
Q ss_pred CeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccC
Q 010211 332 DGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAH 411 (515)
Q Consensus 332 DgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~ 411 (515)
|.+++---+-.....-..+ ...++ .++....|++.+. +.-+.. |+..+...|+|++++..---.
T Consensus 164 ~~i~~~~~~~~g~~~g~~~-~~i~~---i~~~~~iPvia~G---------GI~~~~---di~~~~~~Ga~gv~vgsa~~~ 227 (241)
T PRK13585 164 GSILFTNVDVEGLLEGVNT-EPVKE---LVDSVDIPVIASG---------GVTTLD---DLRALKEAGAAGVVVGSALYK 227 (241)
T ss_pred CEEEEEeecCCCCcCCCCH-HHHHH---HHHhCCCCEEEeC---------CCCCHH---HHHHHHHcCCCEEEEEHHHhc
Confidence 7787642221111111222 22333 3445679999843 444433 344556679999999755556
Q ss_pred CCCHHH
Q 010211 412 GKFPLK 417 (515)
Q Consensus 412 G~yPve 417 (515)
|.++++
T Consensus 228 ~~~~~~ 233 (241)
T PRK13585 228 GKFTLE 233 (241)
T ss_pred CCcCHH
Confidence 666543
No 318
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=49.59 E-value=1.3e+02 Score=31.30 Aligned_cols=119 Identities=12% Similarity=0.200 Sum_probs=78.8
Q ss_pred CCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEE-Eeccc--cccc-cC
Q 010211 307 ADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIV-ATNML--ESMI-DH 381 (515)
Q Consensus 307 ~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPviv-ATqmL--eSMi-~~ 381 (515)
.+++|........-++.+..-+.. .+.||+.-. .+++++=...-+++++.|+..|..|=- -.++= |.-+ ..
T Consensus 73 ~~VPV~lHLDHg~~~e~i~~Ai~~GftSVM~DgS----~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~ 148 (284)
T PRK09195 73 YHHPLALHLDHHEKFDDIAQKVRSGVRSVMIDGS----HLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVD 148 (284)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCEEEeCCC----CCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccc
Confidence 468899999998877666666666 789999733 467888888899999999999988721 00010 0000 00
Q ss_pred CCc-ChHHHhHHHHHHH-hCCcEEeecccccCCCCH---HHHHHHHHHHHHHH
Q 010211 382 PTP-TRAEVSDIAIAVR-EGADAVMLSGETAHGKFP---LKAVKVMHTVALRT 429 (515)
Q Consensus 382 ~~P-trAEv~DvanaV~-~G~D~vmLs~ETa~G~yP---veaV~~m~~I~~~a 429 (515)
... ......+...|+. -|+|++-.+--|+.|.|+ ---...+.+|....
T Consensus 149 ~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~ 201 (284)
T PRK09195 149 EADALYTDPAQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWV 201 (284)
T ss_pred cccccCCCHHHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHh
Confidence 000 0111234557776 499999999999999995 34456666665544
No 319
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=49.55 E-value=1.1e+02 Score=28.26 Aligned_cols=75 Identities=19% Similarity=0.155 Sum_probs=46.0
Q ss_pred cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCc-----ChHHHhHHHHHHHhCCcEEee
Q 010211 331 SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTP-----TRAEVSDIAIAVREGADAVML 405 (515)
Q Consensus 331 sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~P-----trAEv~DvanaV~~G~D~vmL 405 (515)
+|||++.. ...+.+.+.+..+..|+++.+ ..+ ++.-+..+-.+...|+|++++
T Consensus 27 v~gi~~~g-------------~~i~~~~~~~~~~~~~v~~~v---------~~~~~~~~~~~~~~~a~~a~~~Gad~i~v 84 (201)
T cd00945 27 FAAVCVNP-------------GYVRLAADALAGSDVPVIVVV---------GFPTGLTTTEVKVAEVEEAIDLGADEIDV 84 (201)
T ss_pred CcEEEECH-------------HHHHHHHHHhCCCCCeEEEEe---------cCCCCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence 78988873 333333333332246766643 223 344577788889999999998
Q ss_pred cccccCCCC----HHHHHHHHHHHHHHH
Q 010211 406 SGETAHGKF----PLKAVKVMHTVALRT 429 (515)
Q Consensus 406 s~ETa~G~y----PveaV~~m~~I~~~a 429 (515)
..- .+.. +-+.++...+|+.++
T Consensus 85 ~~~--~~~~~~~~~~~~~~~~~~i~~~~ 110 (201)
T cd00945 85 VIN--IGSLKEGDWEEVLEEIAAVVEAA 110 (201)
T ss_pred ecc--HHHHhCCCHHHHHHHHHHHHHHh
Confidence 522 1111 356678888888876
No 320
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=49.38 E-value=1e+02 Score=31.28 Aligned_cols=100 Identities=21% Similarity=0.154 Sum_probs=57.0
Q ss_pred cHHHHHhh-cCeeEEcC-CcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCC
Q 010211 323 NLHSIISA-SDGAMVAR-GDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGA 400 (515)
Q Consensus 323 NldeIl~~-sDgImIgr-gDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~ 400 (515)
+++-.++. +||++++= .-=+..|..++-..+.+.+++.++ -..|+++.+ ....++.-+...-.+...|+
T Consensus 27 ~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~-~~~~vi~gv--------~~~st~~~i~~a~~a~~~Ga 97 (289)
T PF00701_consen 27 LIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAA-GRVPVIAGV--------GANSTEEAIELARHAQDAGA 97 (289)
T ss_dssp HHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHT-TSSEEEEEE--------ESSSHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHcc-CceEEEecC--------cchhHHHHHHHHHHHhhcCc
Confidence 34445555 89999961 111122233444444455554432 346777643 22233333555666778899
Q ss_pred cEEeecccccCCCCHHHHHHHHHHHHHHHhc
Q 010211 401 DAVMLSGETAHGKFPLKAVKVMHTVALRTES 431 (515)
Q Consensus 401 D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~ 431 (515)
|++|+..=--...-+-+.+++.+.|+...+.
T Consensus 98 d~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~ 128 (289)
T PF00701_consen 98 DAVLVIPPYYFKPSQEELIDYFRAIADATDL 128 (289)
T ss_dssp SEEEEEESTSSSCCHHHHHHHHHHHHHHSSS
T ss_pred eEEEEeccccccchhhHHHHHHHHHHhhcCC
Confidence 9999865433445577888999999966553
No 321
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=49.37 E-value=1.2e+02 Score=32.46 Aligned_cols=80 Identities=26% Similarity=0.338 Sum_probs=54.9
Q ss_pred CeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccC
Q 010211 332 DGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAH 411 (515)
Q Consensus 332 DgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~ 411 (515)
-++|--+...|.-.|+. =+...+.+++. ...||++. .+.-+. +|++.++..|+|++++++--+.
T Consensus 220 ~avmPl~~pIGsg~gv~-~p~~i~~~~e~---~~vpVivd---------AGIg~~---sda~~AmelGadgVL~nSaIa~ 283 (326)
T PRK11840 220 VAVMPLGAPIGSGLGIQ-NPYTIRLIVEG---ATVPVLVD---------AGVGTA---SDAAVAMELGCDGVLMNTAIAE 283 (326)
T ss_pred EEEeeccccccCCCCCC-CHHHHHHHHHc---CCCcEEEe---------CCCCCH---HHHHHHHHcCCCEEEEcceecc
Confidence 45555455666666655 35555555555 57999984 344443 4788999999999999988889
Q ss_pred CCCHHHHHHHHHHHHH
Q 010211 412 GKFPLKAVKVMHTVAL 427 (515)
Q Consensus 412 G~yPveaV~~m~~I~~ 427 (515)
.+-|+.--+.|+.-++
T Consensus 284 a~dPv~Ma~A~~~av~ 299 (326)
T PRK11840 284 AKNPVLMARAMKLAVE 299 (326)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999876665554433
No 322
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=48.94 E-value=54 Score=33.08 Aligned_cols=69 Identities=22% Similarity=0.132 Sum_probs=41.3
Q ss_pred hcchhcCCcEEEecccCCH---HHHHHHHHHHHhcCCCceEEE--EecChhhhhcHHHHHhh-cCeeEEcCCcccccCC
Q 010211 274 KFGVDNQVDFYAVSFVKDA---KVVHELKDYLKSCNADIHVIV--KIESADSIPNLHSIISA-SDGAMVARGDLGAELP 346 (515)
Q Consensus 274 ~~al~~gvD~ValSfVrsa---~dv~~vr~~l~~~~~~i~IIa--KIEt~~aveNldeIl~~-sDgImIgrgDLg~elg 346 (515)
+...+.|+|+|.+---.+. .++..+++.-+.. .+++||+ =|.|. +...+.+.. +|++||||+=|.-.+.
T Consensus 155 ~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~-~~ipIIgNGgI~s~---eda~e~l~~GAd~VmvgR~~l~~~~~ 229 (231)
T TIGR00736 155 LNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEF-NDKIIIGNNSIDDI---ESAKEMLKAGADFVSVARAILKGNVE 229 (231)
T ss_pred HHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhc-CCCcEEEECCcCCH---HHHHHHHHhCCCeEEEcHhhccCCcC
Confidence 4456889999988522221 3566666544322 2377777 23333 333444445 9999999987765543
No 323
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=48.85 E-value=2.8e+02 Score=27.37 Aligned_cols=46 Identities=22% Similarity=0.353 Sum_probs=30.3
Q ss_pred HhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHh-CCcEEeecccccCCCCHHHHH
Q 010211 362 RSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVRE-GADAVMLSGETAHGKFPLKAV 419 (515)
Q Consensus 362 ~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~-G~D~vmLs~ETa~G~yPveaV 419 (515)
+..+.|++.+ .+.-+.. |+..+... |+|++|+..----|.+..+.+
T Consensus 190 ~~~~~pvia~---------GGi~~~~---di~~~l~~~g~dgv~vg~al~~~~~~~~~~ 236 (243)
T cd04731 190 SAVNIPVIAS---------GGAGKPE---HFVEAFEEGGADAALAASIFHFGEYTIAEL 236 (243)
T ss_pred hhCCCCEEEe---------CCCCCHH---HHHHHHHhCCCCEEEEeHHHHcCCCCHHHH
Confidence 3468999984 3444433 44455554 999999986666788866543
No 324
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=48.76 E-value=79 Score=39.93 Aligned_cols=136 Identities=15% Similarity=0.078 Sum_probs=86.5
Q ss_pred ceeeeCCCccCCCCCCHhhHHHhhcchhcCCcEEEecc---cCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHH-
Q 010211 251 RHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSF---VKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHS- 326 (515)
Q Consensus 251 KgVnlpg~~~~lp~ltekD~~dI~~al~~gvD~ValSf---Vrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNlde- 326 (515)
.|=.|||..+. .++..++ .++.|+|.|.-|- +.|.+|+.++-.-|++.+....|-+|+=...++..+..
T Consensus 943 ~GG~Lpg~KV~------~~IA~~R-~~~~G~~liSP~phhdiySieDL~qlI~~Lk~~~~~~~I~VKl~a~~~vg~ia~g 1015 (1485)
T PRK11750 943 EGGQLPGDKVN------PLIARLR-YSVPGVTLISPPPHHDIYSIEDLAQLIFDLKQVNPKALVSVKLVSEPGVGTIATG 1015 (1485)
T ss_pred CCCcCccccCC------HHHHHHc-CCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHhCCCCcEEEEEccCCCccHHHhC
Confidence 35567777753 3444443 4466888775443 34677777776778888888899999988778877664
Q ss_pred HHhh-cCeeEEcCCcccc---------cCCCC---CHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHH
Q 010211 327 IISA-SDGAMVARGDLGA---------ELPIE---DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIA 393 (515)
Q Consensus 327 Il~~-sDgImIgrgDLg~---------elg~e---~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~Dva 393 (515)
+++. +|.|.|.=+|=|. ..|+| -+..+++.+.+.-.+....+++.. +.-| -.|++
T Consensus 1016 vaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~~~glR~rv~l~a~G---------gl~t---~~Dv~ 1083 (1485)
T PRK11750 1016 VAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALVANGLRHKIRLQVDG---------GLKT---GLDVI 1083 (1485)
T ss_pred hhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHHHhcCCCcceEEEEcC---------CcCC---HHHHH
Confidence 3334 8999998655322 23333 355566655554444444455533 2222 26899
Q ss_pred HHHHhCCcEEee
Q 010211 394 IAVREGADAVML 405 (515)
Q Consensus 394 naV~~G~D~vmL 405 (515)
-+++.|+|.+-+
T Consensus 1084 kA~aLGAd~~~~ 1095 (1485)
T PRK11750 1084 KAAILGAESFGF 1095 (1485)
T ss_pred HHHHcCCccccc
Confidence 999999998764
No 325
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=48.47 E-value=56 Score=30.24 Aligned_cols=97 Identities=13% Similarity=0.152 Sum_probs=59.4
Q ss_pred hcchhcCCcEEEecccCCH------HHHHHHHHHHHhcCCCceEEE-EecC--------------hhhhhcHHHHHhh--
Q 010211 274 KFGVDNQVDFYAVSFVKDA------KVVHELKDYLKSCNADIHVIV-KIES--------------ADSIPNLHSIISA-- 330 (515)
Q Consensus 274 ~~al~~gvD~ValSfVrsa------~dv~~vr~~l~~~~~~i~IIa-KIEt--------------~~aveNldeIl~~-- 330 (515)
+++.+.|+++|-+.+.... .++.++++++++.|-.+..+. .... .++++.+.+.++.
T Consensus 2 ~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~ 81 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAK 81 (213)
T ss_dssp HHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHH
Confidence 4556778888887665332 246678888888765533222 1111 2236666666665
Q ss_pred ---cCeeEEcCC--cccccCCC----CCHHHHHHHHHHHHHhcCCcEEE
Q 010211 331 ---SDGAMVARG--DLGAELPI----EDVPLLQEDIIRRCRSMQKPVIV 370 (515)
Q Consensus 331 ---sDgImIgrg--DLg~elg~----e~v~~aqk~Ii~~c~~aGKPviv 370 (515)
++.+.+..| +....... +.+....+++.+.+.+.|..+.+
T Consensus 82 ~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~l 130 (213)
T PF01261_consen 82 RLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIAL 130 (213)
T ss_dssp HHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEE
Confidence 688888877 32222222 45666778888899999966555
No 326
>PRK07695 transcriptional regulator TenI; Provisional
Probab=48.45 E-value=31 Score=33.22 Aligned_cols=36 Identities=0% Similarity=-0.053 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHH
Q 010211 114 REMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKE 149 (515)
Q Consensus 114 ~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~ 149 (515)
...+.+++++|++.+-|.--+.+.++..+.++.+++
T Consensus 17 ~~~~~~~~~~g~~~iqlR~k~~~~~~~~~~~~~l~~ 52 (201)
T PRK07695 17 LVAVAMQIHSEVDYIHIREREKSAKELYEGVESLLK 52 (201)
T ss_pred HHHHHHHHhCCCCEEEEcCCCCCHHHHHHHHHHHHH
Confidence 334445899999999999999999988888877774
No 327
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=48.39 E-value=89 Score=27.46 Aligned_cols=65 Identities=8% Similarity=0.124 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEE
Q 010211 291 DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIV 370 (515)
Q Consensus 291 sa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPviv 370 (515)
|.--+..+++++++.|-+..+.+ -++..+++.+.-.|.|++| |.+....+++-+.|...|+||.+
T Consensus 13 Ss~la~km~~~a~~~gi~~~i~a-----~~~~e~~~~~~~~Dvill~----------PQv~~~~~~i~~~~~~~~ipv~~ 77 (99)
T cd05565 13 SGLLANALNKGAKERGVPLEAAA-----GAYGSHYDMIPDYDLVILA----------PQMASYYDELKKDTDRLGIKLVT 77 (99)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEE-----eeHHHHHHhccCCCEEEEc----------ChHHHHHHHHHHHhhhcCCCEEE
Confidence 34445778999988877755443 2444566666678999987 68999999999999999999987
No 328
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=48.03 E-value=1.2e+02 Score=26.44 Aligned_cols=53 Identities=13% Similarity=0.269 Sum_probs=38.1
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChH----------HHHHHHHHHHHHHh
Q 010211 100 KTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHA----------SHQKTIDLVKEYNS 152 (515)
Q Consensus 100 ~TKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e----------~~~~~i~~ir~~~~ 152 (515)
..+|..+..+...+.+.++.|.++|++.+++++...+.+ .++++++.++.+.+
T Consensus 76 ~~~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 138 (166)
T PF04055_consen 76 GIRISINTNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKE 138 (166)
T ss_dssp TEEEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHH
T ss_pred ccceeeeccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHH
Confidence 444544444444459999999999999999999999987 34455566666554
No 329
>PF00677 Lum_binding: Lumazine binding domain; InterPro: IPR001783 The following proteins have been shown [, ] to be structurally and evolutionary related: Riboflavin synthase alpha chain (2.5.1.9 from EC) (RS-alpha) (gene ribC in Escherichia coli, ribB in Bacillus subtilis and Photobacterium leiognathi, RIB5 in yeast. This enzyme synthesises riboflavin from two moles of 6,7- dimethyl-8-(1'-D-ribityl)lumazine (Lum), a pteridine-derivative. Photobacterium phosphoreum lumazine protein (LumP) (gene luxL). LumP is a protein that modulates the colour of the bioluminescence emission of bacterial luciferase. In the presence of LumP, light emission is shifted to higher energy values (shorter wavelength). LumP binds non-covalently to 6,7-dimethyl-8-(1'-D-ribityl)lumazine. Vibrio fischeri yellow fluorescent protein (YFP) (gene luxY). Like LumP, YFP modulates light emission but towards a longer wavelength. YFP binds non-covalently to FMN. These proteins seem to have evolved from the duplication of a domain of about 100 residues. In its C-terminal section, this domain contains a conserved motif [KR]-V-N-[LI]-E which has been proposed to be the binding site for lumazine (Lum) and some of its derivatives. RS-alpha which binds two molecules of Lum has two perfect copies of this motif, while LumP which binds one molecule of Lum, has a Glu instead of Lys/Arg in the first position of the second copy of the motif. Similarly, YFP, which binds to one molecule of FMN, also seems to have a potentially dysfunctional binding site by substitution of Gly for Glu in the last position of the first copy of the motif.; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process; PDB: 3DDY_A 1KZL_A 3A3G_B 3A35_B 3A3B_B 1I8D_C 1PKV_B 1HZE_B 1I18_B.
Probab=47.43 E-value=89 Score=26.40 Aligned_cols=54 Identities=20% Similarity=0.433 Sum_probs=38.1
Q ss_pred eEEeccc-ccccccCcCCEEEEeCCeeEEEEEEEeCCeEEEEEe-------eCcEeccCceeee
Q 010211 200 TVSVNYD-DFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVV-------DGGELKSRRHLNV 255 (515)
Q Consensus 200 ~i~v~~~-~l~~~v~~Gd~IliDDG~I~l~V~~~~~~~v~~~V~-------~gG~L~s~KgVnl 255 (515)
.+.+..+ ..+..+.+|+.|-+|. +.|.|.++.++.+...+. +=|.++.+.-||+
T Consensus 21 ~~~i~~~~~~~~~~~~g~SIavnG--vcLTV~~~~~~~f~~~l~~eTl~~T~l~~~~~G~~VNl 82 (85)
T PF00677_consen 21 RLRIEIPDKILSDLKIGGSIAVNG--VCLTVTDINEDWFEVDLIPETLRRTTLGNLKVGDRVNL 82 (85)
T ss_dssp EEEEEESTGGGGTG-TTSEEEETT--EEEEEEEEETTEEEEEEEHHHHHCSSGGG--TTSEEEE
T ss_pred EEEEEcCHHHHhhCccCcEEEECC--eeeEEEEecCCEEEEechHHHhhhchhccCCCCCEEEE
Confidence 4455555 7788999999999987 889999999998877654 3355555555655
No 330
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=47.33 E-value=90 Score=30.76 Aligned_cols=65 Identities=17% Similarity=0.226 Sum_probs=46.6
Q ss_pred HHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 010211 296 HELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (515)
Q Consensus 296 ~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivA 371 (515)
..+++.+.+.|.++.+-+.-+.. .-+|+++++.-.|.|+.+-.+ +.....+-+.|+++++|.+.+
T Consensus 78 ~~~~~~l~~~np~~~i~~~~~~i-~~~~~~~~~~~~DvVi~~~d~----------~~~r~~l~~~~~~~~ip~i~~ 142 (228)
T cd00757 78 EAAAERLRAINPDVEIEAYNERL-DAENAEELIAGYDLVLDCTDN----------FATRYLINDACVKLGKPLVSG 142 (228)
T ss_pred HHHHHHHHHhCCCCEEEEeccee-CHHHHHHHHhCCCEEEEcCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 34677788878877665544433 347888888889988887322 245677889999999999875
No 331
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=47.15 E-value=2.5e+02 Score=27.57 Aligned_cols=133 Identities=19% Similarity=0.184 Sum_probs=67.4
Q ss_pred HHHhhcchhcCCcEEEecccCCH------------HHHHHH---HHHHHhcCCCceEEEEecChhh-hhcHHHH---Hh-
Q 010211 270 WEDIKFGVDNQVDFYAVSFVKDA------------KVVHEL---KDYLKSCNADIHVIVKIESADS-IPNLHSI---IS- 329 (515)
Q Consensus 270 ~~dI~~al~~gvD~ValSfVrsa------------~dv~~v---r~~l~~~~~~i~IIaKIEt~~a-veNldeI---l~- 329 (515)
.++++.+.+.|+|.|.+++--+. +++..+ .++.++.| ..+..-+|+... ..|.+++ ++
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G--~~v~~~~~~~~~~~~~~~~l~~~~~~ 154 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAG--LEVEGSLEDAFGCKTDPEYVLEVAKA 154 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC--CeEEEEEEeecCCCCCHHHHHHHHHH
Confidence 45667777889999988875441 133333 34445544 445556654443 2233332 22
Q ss_pred ---h-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhc-C-CcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEE
Q 010211 330 ---A-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSM-Q-KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAV 403 (515)
Q Consensus 330 ---~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~a-G-KPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~v 403 (515)
. +|.|.+. |- .|. -.|.-.+++++..++. + .|+.+.+ ++ ..--| +.-...|+..|+|.+
T Consensus 155 ~~~~g~~~i~l~--Dt---~G~-~~P~~v~~li~~l~~~~~~~~~~~H~-------Hn-~~gla-~an~laA~~aG~~~i 219 (265)
T cd03174 155 LEEAGADEISLK--DT---VGL-ATPEEVAELVKALREALPDVPLGLHT-------HN-TLGLA-VANSLAALEAGADRV 219 (265)
T ss_pred HHHcCCCEEEec--hh---cCC-cCHHHHHHHHHHHHHhCCCCeEEEEe-------CC-CCChH-HHHHHHHHHcCCCEE
Confidence 2 5777765 32 232 2233334444443332 2 6777765 33 33333 233446677887764
Q ss_pred e---ec-ccccCCCCHHHHHH
Q 010211 404 M---LS-GETAHGKFPLKAVK 420 (515)
Q Consensus 404 m---Ls-~ETa~G~yPveaV~ 420 (515)
= .- || ..|+=|.|.+-
T Consensus 220 d~s~~G~G~-~~Gn~~~e~~~ 239 (265)
T cd03174 220 DGSVNGLGE-RAGNAATEDLV 239 (265)
T ss_pred Eeccccccc-cccCccHHHHH
Confidence 2 11 22 35677776654
No 332
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=47.05 E-value=88 Score=31.44 Aligned_cols=65 Identities=18% Similarity=0.252 Sum_probs=45.9
Q ss_pred HHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 010211 296 HELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (515)
Q Consensus 296 ~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivA 371 (515)
..+++.+.+.|.++.+.+.-+... -+|++++++-.|.|+.+- +-+.....+-+.|+++++|++.+
T Consensus 89 ~~a~~~l~~lnp~v~i~~~~~~i~-~~~~~~~~~~~DiVi~~~----------D~~~~r~~ln~~~~~~~ip~v~~ 153 (245)
T PRK05690 89 ESARAALARINPHIAIETINARLD-DDELAALIAGHDLVLDCT----------DNVATRNQLNRACFAAKKPLVSG 153 (245)
T ss_pred HHHHHHHHHHCCCCEEEEEeccCC-HHHHHHHHhcCCEEEecC----------CCHHHHHHHHHHHHHhCCEEEEe
Confidence 345667777788877666444333 257788888889888762 12346678889999999999875
No 333
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=47.03 E-value=96 Score=29.44 Aligned_cols=67 Identities=21% Similarity=0.239 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhc-CCcEEEEe
Q 010211 295 VHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSM-QKPVIVAT 372 (515)
Q Consensus 295 v~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~a-GKPvivAT 372 (515)
...+++.+.+.|..+.+.+--+.... +|++++++-.|.|+.+- +. +.....+.+.|.+. ++|.+.+.
T Consensus 54 a~~~~~~l~~lnp~v~i~~~~~~~~~-~~~~~~l~~~DlVi~~~---------d~-~~~r~~i~~~~~~~~~ip~i~~~ 121 (174)
T cd01487 54 VEALKENLREINPFVKIEAINIKIDE-NNLEGLFGDCDIVVEAF---------DN-AETKAMLAESLLGNKNKPVVCAS 121 (174)
T ss_pred HHHHHHHHHHHCCCCEEEEEEeecCh-hhHHHHhcCCCEEEECC---------CC-HHHHHHHHHHHHHHCCCCEEEEe
Confidence 44567778878888776664444433 67888888788777762 22 34556677777776 99999863
No 334
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=47.02 E-value=3e+02 Score=28.28 Aligned_cols=118 Identities=19% Similarity=0.239 Sum_probs=58.9
Q ss_pred hHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh---------cCeeEEcCC
Q 010211 269 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA---------SDGAMVARG 339 (515)
Q Consensus 269 D~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~---------sDgImIgrg 339 (515)
|..++++..+. +|++.++ .++.++..-+ ..+.. ....|+.|==+.. +++|++.+ -+.+++=||
T Consensus 100 d~~~~~~l~~~-vd~~kIg-a~~~~n~~LL-~~~a~--~gkPV~lk~G~~~---s~~e~~~A~e~i~~~Gn~~i~L~~rG 171 (266)
T PRK13398 100 DTRDVEEVADY-ADMLQIG-SRNMQNFELL-KEVGK--TKKPILLKRGMSA---TLEEWLYAAEYIMSEGNENVVLCERG 171 (266)
T ss_pred ChhhHHHHHHh-CCEEEEC-cccccCHHHH-HHHhc--CCCcEEEeCCCCC---CHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 44555555555 6776665 2444443222 33333 2345555532221 33333332 367777787
Q ss_pred cccccCCCCCHHHHHHHHHHHH-HhcCCcEEE-EeccccccccCCCcChHH--HhHHHHHHHhCCcEEee
Q 010211 340 DLGAELPIEDVPLLQEDIIRRC-RSMQKPVIV-ATNMLESMIDHPTPTRAE--VSDIAIAVREGADAVML 405 (515)
Q Consensus 340 DLg~elg~e~v~~aqk~Ii~~c-~~aGKPviv-ATqmLeSMi~~~~PtrAE--v~DvanaV~~G~D~vmL 405 (515)
--+.+ +++.. .+.-..+..- +..+.||++ +++ .. .+.+ ......++..|+|++|+
T Consensus 172 ~~t~~-~Y~~~-~vdl~~i~~lk~~~~~pV~~D~sH-------s~--G~~~~v~~~~~aAva~Ga~Gl~i 230 (266)
T PRK13398 172 IRTFE-TYTRN-TLDLAAVAVIKELSHLPIIVDPSH-------AT--GRRELVIPMAKAAIAAGADGLMI 230 (266)
T ss_pred CCCCC-CCCHH-HHHHHHHHHHHhccCCCEEEeCCC-------cc--cchhhHHHHHHHHHHcCCCEEEE
Confidence 54342 33322 2333333333 445899998 553 11 1111 33456789999999997
No 335
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=46.87 E-value=2.8e+02 Score=29.33 Aligned_cols=89 Identities=20% Similarity=0.229 Sum_probs=49.5
Q ss_pred CceEEEEecChhhhhcHHHHHhh-----cCeeEEcC----Cc------ccccC-CC---CCHHHHHHHHHHHHHhc--CC
Q 010211 308 DIHVIVKIESADSIPNLHSIISA-----SDGAMVAR----GD------LGAEL-PI---EDVPLLQEDIIRRCRSM--QK 366 (515)
Q Consensus 308 ~i~IIaKIEt~~aveNldeIl~~-----sDgImIgr----gD------Lg~el-g~---e~v~~aqk~Ii~~c~~a--GK 366 (515)
++.|++|+=---.-+++.++++. +|||.+.= .+ ++... |+ +.-+.+.+.+-...+.. ..
T Consensus 210 ~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~i 289 (335)
T TIGR01036 210 RVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRL 289 (335)
T ss_pred CCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCC
Confidence 38899999543332355666553 78887531 00 01111 11 23444555555555444 35
Q ss_pred cEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeeccc
Q 010211 367 PVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGE 408 (515)
Q Consensus 367 PvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~E 408 (515)
|+|-+. +.-| -.|+..++..|+|+|.+...
T Consensus 290 piig~G---------GI~~---~~da~e~l~aGA~~Vqv~ta 319 (335)
T TIGR01036 290 PIIGVG---------GISS---AQDALEKIRAGASLLQIYSG 319 (335)
T ss_pred CEEEEC---------CCCC---HHHHHHHHHcCCcHHHhhHH
Confidence 766533 2222 34788999999999998643
No 336
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=46.86 E-value=56 Score=32.80 Aligned_cols=83 Identities=23% Similarity=0.284 Sum_probs=54.0
Q ss_pred HHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEecc
Q 010211 296 HELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNM 374 (515)
Q Consensus 296 ~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqm 374 (515)
..+++.+.+.|.++.|.+.-+... -+|+++++.. .|.|+.+ ... ......+.+.|++.++|++.+.
T Consensus 68 e~~~~~l~~inP~~~V~~~~~~i~-~~~~~~l~~~~~D~Vvda---------iD~-~~~k~~L~~~c~~~~ip~I~s~-- 134 (231)
T cd00755 68 EVMAERIRDINPECEVDAVEEFLT-PDNSEDLLGGDPDFVVDA---------IDS-IRAKVALIAYCRKRKIPVISSM-- 134 (231)
T ss_pred HHHHHHHHHHCCCcEEEEeeeecC-HhHHHHHhcCCCCEEEEc---------CCC-HHHHHHHHHHHHHhCCCEEEEe--
Confidence 346777777788776655433322 2577887753 6777766 222 3455678999999999999752
Q ss_pred ccccccCCCcChHHHhHHH
Q 010211 375 LESMIDHPTPTRAEVSDIA 393 (515)
Q Consensus 375 LeSMi~~~~PtrAEv~Dva 393 (515)
+.-....||+-++.|++
T Consensus 135 --g~g~~~dp~~i~i~di~ 151 (231)
T cd00755 135 --GAGGKLDPTRIRVADIS 151 (231)
T ss_pred --CCcCCCCCCeEEEccEe
Confidence 22233578887777763
No 337
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=46.74 E-value=1.7e+02 Score=26.67 Aligned_cols=44 Identities=23% Similarity=0.420 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHHHhCCcEEEEecCCCChHHH---------HHHHHHHHHHHh
Q 010211 109 PSTSSREMIWKLAEEGMNVARLNMSHGDHASH---------QKTIDLVKEYNS 152 (515)
Q Consensus 109 Pss~~~e~i~~li~aGm~v~RiN~SHg~~e~~---------~~~i~~ir~~~~ 152 (515)
+...+.+.+++|.++|.+.+.+++-|++.+.+ +++++.++.+.+
T Consensus 95 ~~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 147 (216)
T smart00729 95 PGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLRE 147 (216)
T ss_pred cccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 45568999999999999988898888887655 445666666543
No 338
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=46.27 E-value=39 Score=34.46 Aligned_cols=55 Identities=18% Similarity=0.255 Sum_probs=43.7
Q ss_pred HHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEEecCCCeee
Q 010211 114 REMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVR 171 (515)
Q Consensus 114 ~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~I~lDL~GPkIR 171 (515)
.+..++|+++|.++.=+|+.-...++++++...|+.+.+..+ ++|.+|+.-|++-
T Consensus 28 ~~~A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~~~---~plsIDT~~~~v~ 82 (261)
T PRK07535 28 QKLALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQEVVD---VPLCIDSPNPAAI 82 (261)
T ss_pred HHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHHhCC---CCEEEeCCCHHHH
Confidence 446677899999999999986666778888888888876654 5589998877754
No 339
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=45.88 E-value=1.5e+02 Score=30.35 Aligned_cols=146 Identities=18% Similarity=0.259 Sum_probs=78.2
Q ss_pred HhhHHHhhcchhcCCcEEEeccc----C---C----HHHHHHHHHHHHhcCCCceEEEEecC----hhhhhcHHHHHhh-
Q 010211 267 DKDWEDIKFGVDNQVDFYAVSFV----K---D----AKVVHELKDYLKSCNADIHVIVKIES----ADSIPNLHSIISA- 330 (515)
Q Consensus 267 ekD~~dI~~al~~gvD~ValSfV----r---s----a~dv~~vr~~l~~~~~~i~IIaKIEt----~~aveNldeIl~~- 330 (515)
.+|+......++.|+|++=+.+- . . .+.+..+.+.+++ -.++++++|+=- ..-..-+.+..+.
T Consensus 111 ~~d~~~~a~~~~~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~-~~~~Pv~vKL~p~~~~~~~~~~~~~~~~~g 189 (295)
T PF01180_consen 111 IEDWAELAKRLEAGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVRE-AVDIPVFVKLSPNFTDIEPFAIAAELAADG 189 (295)
T ss_dssp HHHHHHHHHHHHHHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHH-HHSSEEEEEE-STSSCHHHHHHHHHHHTHT
T ss_pred HHHHHHHHHHhcCcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHh-ccCCCEEEEecCCCCchHHHHHHHHhhccc
Confidence 34544443344578998866432 1 1 1112222233322 226899999944 1112222222222
Q ss_pred cCeeE----EcCCc-ccccC-------------CCCCHHHHHHHHHHHHHhcC--CcEEEEeccccccccCCCcChHHHh
Q 010211 331 SDGAM----VARGD-LGAEL-------------PIEDVPLLQEDIIRRCRSMQ--KPVIVATNMLESMIDHPTPTRAEVS 390 (515)
Q Consensus 331 sDgIm----IgrgD-Lg~el-------------g~e~v~~aqk~Ii~~c~~aG--KPvivATqmLeSMi~~~~PtrAEv~ 390 (515)
+|||. +..++ +-.+- |.+--+.+.+.+-+..++.+ .|++-. .+.-| -.
T Consensus 190 ~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~---------GGI~s---~~ 257 (295)
T PF01180_consen 190 ADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGV---------GGIHS---GE 257 (295)
T ss_dssp ECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEE---------SS--S---HH
T ss_pred eeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhccccceEEEEe---------CCcCC---HH
Confidence 78888 55444 22221 11345677888888788777 776653 34433 34
Q ss_pred HHHHHHHhCCcEEeecccc-cCCCCHHHHHHHHHHHHHHHhc
Q 010211 391 DIAIAVREGADAVMLSGET-AHGKFPLKAVKVMHTVALRTES 431 (515)
Q Consensus 391 DvanaV~~G~D~vmLs~ET-a~G~yPveaV~~m~~I~~~aE~ 431 (515)
|+..++..|+|+|.+.+-. -.|.. ...+|+++.|+
T Consensus 258 da~e~l~aGA~~Vqv~Sal~~~Gp~------~~~~i~~~L~~ 293 (295)
T PF01180_consen 258 DAIEFLMAGASAVQVCSALIYRGPG------VIRRINRELEE 293 (295)
T ss_dssp HHHHHHHHTESEEEESHHHHHHGTT------HHHHHHHHHHH
T ss_pred HHHHHHHhCCCHheechhhhhcCcH------HHHHHHHHHHh
Confidence 8889999999999997433 12443 35566665553
No 340
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=45.85 E-value=50 Score=36.61 Aligned_cols=50 Identities=18% Similarity=0.342 Sum_probs=40.6
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHH
Q 010211 100 KTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKE 149 (515)
Q Consensus 100 ~TKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~ 149 (515)
+.++-+-+|+.-.+.+.++.|+++|+++.-++-+||..+.+.+.++.+|+
T Consensus 216 ~l~V~aai~~~~~~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 216 RLRVGAAVGVGADNEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKA 265 (486)
T ss_pred CEEEEeecccCcchHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHh
Confidence 55666677765577999999999999999999999998776666666664
No 341
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=45.84 E-value=1.2e+02 Score=31.54 Aligned_cols=118 Identities=17% Similarity=0.289 Sum_probs=0.0
Q ss_pred CceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcE----EEEeccccc-cccC
Q 010211 308 DIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPV----IVATNMLES-MIDH 381 (515)
Q Consensus 308 ~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPv----ivATqmLeS-Mi~~ 381 (515)
.++|.........++.+..-+.. .+.||+. |-++++++=...-+++++.|+..|..| |.-..-=+. ....
T Consensus 74 ~VPValHLDH~~~~e~i~~ai~~GftSVM~D----gS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~ 149 (284)
T PRK12857 74 SVPVALHLDHGTDFEQVMKCIRNGFTSVMID----GSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDE 149 (284)
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCCeEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCccc
Q ss_pred CCcChHHHhHHHHHHHh-CCcEEeecccccCCCC---HHHHHHHHHHHHHHH
Q 010211 382 PTPTRAEVSDIAIAVRE-GADAVMLSGETAHGKF---PLKAVKVMHTVALRT 429 (515)
Q Consensus 382 ~~PtrAEv~DvanaV~~-G~D~vmLs~ETa~G~y---PveaV~~m~~I~~~a 429 (515)
..-......+...|+.. |+|++-.+--|+.|.| |---...+.+|....
T Consensus 150 ~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~ 201 (284)
T PRK12857 150 REAAMTDPEEARRFVEETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELV 201 (284)
T ss_pred chhhcCCHHHHHHHHHHHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHh
No 342
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=45.65 E-value=2.9e+02 Score=26.79 Aligned_cols=114 Identities=11% Similarity=0.109 Sum_probs=62.9
Q ss_pred CHhhHHHhhcc-hhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEe---------cChhhhhcHHHHHhh-cCee
Q 010211 266 TDKDWEDIKFG-VDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKI---------ESADSIPNLHSIISA-SDGA 334 (515)
Q Consensus 266 tekD~~dI~~a-l~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKI---------Et~~aveNldeIl~~-sDgI 334 (515)
+..|...+..+ ...|+.++.+ .+.++++.+++.. +++++-+. ---.-.+.+++..+. +|.|
T Consensus 21 ~~~~~~~~a~a~~~~G~~~~~~---~~~~~i~~i~~~~-----~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I 92 (221)
T PRK01130 21 SPEIMAAMALAAVQGGAVGIRA---NGVEDIKAIRAVV-----DVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADII 92 (221)
T ss_pred CHHHHHHHHHHHHHCCCeEEEc---CCHHHHHHHHHhC-----CCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEE
Confidence 34555666544 5567776543 4677777776642 34444221 100112456666666 7977
Q ss_pred EEcCCcccccCCCCCHHHHHHHHHHHHHh-cCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 335 MVARGDLGAELPIEDVPLLQEDIIRRCRS-MQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 335 mIgrgDLg~elg~e~v~~aqk~Ii~~c~~-aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
.+.-..+- .+.. ...+++++.+++ .+.|++.-+ .+..|+ ..+...|+|.+..+
T Consensus 93 ~~d~~~~~--~p~~---~~~~~~i~~~~~~~~i~vi~~v-----------~t~ee~---~~a~~~G~d~i~~~ 146 (221)
T PRK01130 93 ALDATLRP--RPDG---ETLAELVKRIKEYPGQLLMADC-----------STLEEG---LAAQKLGFDFIGTT 146 (221)
T ss_pred EEeCCCCC--CCCC---CCHHHHHHHHHhCCCCeEEEeC-----------CCHHHH---HHHHHcCCCEEEcC
Confidence 76422221 0100 234678888888 899988632 233332 46788899998763
No 343
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=45.54 E-value=35 Score=31.42 Aligned_cols=40 Identities=15% Similarity=0.089 Sum_probs=33.7
Q ss_pred eeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEe
Q 010211 333 GAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVAT 372 (515)
Q Consensus 333 gImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivAT 372 (515)
.+++|-.|+....+.+++....+.+++.+++.|.++++.|
T Consensus 64 ~i~~G~ND~~~~~~~~~~~~~~~~li~~~~~~~~~~il~~ 103 (183)
T cd04501 64 IIMGGTNDIIVNTSLEMIKDNIRSMVELAEANGIKVILAS 103 (183)
T ss_pred EEEeccCccccCCCHHHHHHHHHHHHHHHHHCCCcEEEEe
Confidence 4567778888777778899999999999999999988854
No 344
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=45.51 E-value=4.4e+02 Score=28.72 Aligned_cols=146 Identities=16% Similarity=0.228 Sum_probs=77.7
Q ss_pred CHhhHHHh-hcchhcCCcEEEeccc---------------CCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHh
Q 010211 266 TDKDWEDI-KFGVDNQVDFYAVSFV---------------KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIIS 329 (515)
Q Consensus 266 tekD~~dI-~~al~~gvD~ValSfV---------------rsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~ 329 (515)
++.|+.++ +..-+.|+|+|-+.|- ++++.+.++-+.+++. -++++++||= + -+.++.++++
T Consensus 125 s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~-~~iPv~vKLs-P-n~t~i~~ia~ 201 (385)
T PLN02495 125 NKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAK-ATVPVWAKMT-P-NITDITQPAR 201 (385)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHh-hcCceEEEeC-C-ChhhHHHHHH
Confidence 55676555 3444568999887652 3344444443444332 3589999996 2 2445666665
Q ss_pred h-----cCeeEEc-----CCcc--cc-----------cCC-C---CCHHHHHHHHHHHHHhc------CCcEEEEecccc
Q 010211 330 A-----SDGAMVA-----RGDL--GA-----------ELP-I---EDVPLLQEDIIRRCRSM------QKPVIVATNMLE 376 (515)
Q Consensus 330 ~-----sDgImIg-----rgDL--g~-----------elg-~---e~v~~aqk~Ii~~c~~a------GKPvivATqmLe 376 (515)
. +|||..- +-++ -. ..| + +--+.++..+-+.+++. +.|++-.+
T Consensus 202 aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvG---- 277 (385)
T PLN02495 202 VALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIG---- 277 (385)
T ss_pred HHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEEC----
Confidence 3 6887652 1111 10 011 1 11233444433333333 46665422
Q ss_pred ccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCC-HHHHHHHHHHHHHHHhcC
Q 010211 377 SMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKF-PLKAVKVMHTVALRTESS 432 (515)
Q Consensus 377 SMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~y-PveaV~~m~~I~~~aE~~ 432 (515)
+.-+ -.|++.+++.|+|+|.+. |+.=.+ | +.+.+|+++.++.
T Consensus 278 -----GI~s---~~Da~e~i~aGAs~VQv~--Ta~~~~Gp----~vi~~i~~~L~~~ 320 (385)
T PLN02495 278 -----GVET---GGDAAEFILLGADTVQVC--TGVMMHGY----PLVKNLCAELQDF 320 (385)
T ss_pred -----CCCC---HHHHHHHHHhCCCceeEe--eeeeecCc----HHHHHHHHHHHHH
Confidence 3322 348999999999999987 443344 4 2344455555543
No 345
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=45.50 E-value=4.4e+02 Score=29.21 Aligned_cols=246 Identities=18% Similarity=0.184 Sum_probs=122.5
Q ss_pred eEEEEEecCCCeeeeeccCCcEEEecCCEEEEEeecCCCCcceEEecccccccccCcCCEEEEeCCeeEEEEEEEeCCeE
Q 010211 158 AVAIMLDTKGPEVRSGDVPQPIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLV 237 (515)
Q Consensus 158 ~i~I~lDL~GPkIRtG~l~~~i~L~~G~~v~lt~~~~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~~~~~~v 237 (515)
-.+.++--.||..++|++ ..+..|..+-.... ...+...-+.+ .=.+.+++|+.|..-+...++.| ++.+
T Consensus 28 ~~g~~~~~~g~~~~ige~---~~i~~~~~~~eV~~--~~~~~~~~~~~-~~~~gi~~g~~v~~~~~~~~v~v----g~~~ 97 (432)
T PRK06793 28 VQEQFFVAKGPKAKIGDV---CFVGEHNVLCEVIA--IEKENNMLLPF-EQTEKVCYGDSVTLIAEDVVIPR----GNHL 97 (432)
T ss_pred EEEEEEEEEcCCCCcCCE---EEECCCCEEEEEEE--ecCCcEEEEEc-cCccCCCCCCEEEECCCccEEEc----CHhh
Confidence 356788888898888876 44432221111111 11112222333 23467899999998777666654 3446
Q ss_pred EEEEeeC-cEeccCceeeeC--CCccCCCCCCHhhHHHhhcchh-------------cCCcEEEecccCCHHHHHHHHHH
Q 010211 238 KCIVVDG-GELKSRRHLNVR--GKSANLPSITDKDWEDIKFGVD-------------NQVDFYAVSFVKDAKVVHELKDY 301 (515)
Q Consensus 238 ~~~V~~g-G~L~s~KgVnlp--g~~~~lp~ltekD~~dI~~al~-------------~gvD~ValSfVrsa~dv~~vr~~ 301 (515)
..+|.++ |.--..++...+ ...+.-|++..-+...+...++ .|-.+..++-........ ++..
T Consensus 98 lGrV~d~~G~piD~~~~~~~~~~~~i~~~~~~~~~r~~i~~~l~TGiraID~ll~I~~Gqri~I~G~sG~GKTtL-l~~I 176 (432)
T PRK06793 98 LGKVLSANGEVLNEEAENIPLQKIKLDAPPIHAFEREEITDVFETGIKSIDSMLTIGIGQKIGIFAGSGVGKSTL-LGMI 176 (432)
T ss_pred ccCEECcCCccCCCCCCCCCcccccccCCCCCchheechhhccCCCCEEEeccceecCCcEEEEECCCCCChHHH-HHHH
Confidence 6666664 443333332111 1122333333333333322222 233332222122222110 2223
Q ss_pred HHhcCCCceEEEEe-cC-hhhhhcHHHHHhhc----CeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccc
Q 010211 302 LKSCNADIHVIVKI-ES-ADSIPNLHSIISAS----DGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNML 375 (515)
Q Consensus 302 l~~~~~~i~IIaKI-Et-~~aveNldeIl~~s----DgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmL 375 (515)
.........+|+-| |. .+.-+.+...+... -.++++..|.+.-+- -..+.+.-.+.+.-+..|++|.+ +|
T Consensus 177 a~~~~~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r-~ra~~~a~~iAEyfr~~G~~VLl---il 252 (432)
T PRK06793 177 AKNAKADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQ-LRAAKLATSIAEYFRDQGNNVLL---MM 252 (432)
T ss_pred hccCCCCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHH-HHHHHHHHHHHHHHHHcCCcEEE---Ee
Confidence 33333344566655 22 22223334444331 135666566543322 24666667777777888999998 67
Q ss_pred cccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHHHHHHHHhcC
Q 010211 376 ESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESS 432 (515)
Q Consensus 376 eSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~ 432 (515)
+||.....+- +-+. .+.+|...+-||.-....+.++++++...
T Consensus 253 DslTr~a~A~--------reis------l~~~e~p~~G~~~~~~s~l~~L~ERag~~ 295 (432)
T PRK06793 253 DSVTRFADAR--------RSVD------IAVKELPIGGKTLLMESYMKKLLERSGKT 295 (432)
T ss_pred cchHHHHHHH--------HHHH------HHhcCCCCCCeeeeeeccchhHHHHhccC
Confidence 7776654442 2121 13456666677766555578888888753
No 346
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=45.48 E-value=47 Score=35.85 Aligned_cols=92 Identities=22% Similarity=0.226 Sum_probs=58.0
Q ss_pred hHHHhhcchhcC-CcEEEecccC--C---------------HHHHHHHHHHHHhcC--CCceEEEEecChhhhhcHHHHH
Q 010211 269 DWEDIKFGVDNQ-VDFYAVSFVK--D---------------AKVVHELKDYLKSCN--ADIHVIVKIESADSIPNLHSII 328 (515)
Q Consensus 269 D~~dI~~al~~g-vD~ValSfVr--s---------------a~dv~~vr~~l~~~~--~~i~IIaKIEt~~aveNldeIl 328 (515)
+.+++..+++.+ +|+|.++-.. + ..-+.++.+++...+ .++.||+ --|+.+-.+++
T Consensus 226 ~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~via----sGGI~~g~Dv~ 301 (392)
T cd02808 226 GEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIA----SGGLRTGADVA 301 (392)
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEE----ECCCCCHHHHH
Confidence 334555555555 9999887653 1 112234455555432 3577776 44666666666
Q ss_pred hh----cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEec
Q 010211 329 SA----SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATN 373 (515)
Q Consensus 329 ~~----sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATq 373 (515)
+. +|++.+||.=|.. ++ -...++|+..-.|+++|||
T Consensus 302 kalaLGAd~V~ig~~~l~a-l~--------c~~~~~c~~~~cP~Giat~ 341 (392)
T cd02808 302 KALALGADAVGIGTAALIA-LG--------CIQARKCHTNTCPVGVATQ 341 (392)
T ss_pred HHHHcCCCeeeechHHHHh-cc--------hHHHHhcCCCCCCcccccC
Confidence 65 8999999765532 11 1234789999999999996
No 347
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=45.46 E-value=37 Score=34.87 Aligned_cols=63 Identities=14% Similarity=0.214 Sum_probs=44.0
Q ss_pred hhHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhh--hhcHHHHHhh-cCeeEEcC
Q 010211 268 KDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADS--IPNLHSIISA-SDGAMVAR 338 (515)
Q Consensus 268 kD~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~a--veNldeIl~~-sDgImIgr 338 (515)
++.+++..+++.|+|+|.+..+ +.++++++.+++. .++++. -.-| .+|+.++++. +|+|-++.
T Consensus 190 ~s~eea~~A~~~gaDyI~ld~~-~~e~l~~~~~~~~---~~ipi~----AiGGI~~~ni~~~a~~Gvd~Iav~s 255 (268)
T cd01572 190 ETLEQLKEALEAGADIIMLDNM-SPEELREAVALLK---GRVLLE----ASGGITLENIRAYAETGVDYISVGA 255 (268)
T ss_pred CCHHHHHHHHHcCCCEEEECCc-CHHHHHHHHHHcC---CCCcEE----EECCCCHHHHHHHHHcCCCEEEEEe
Confidence 3456677778899999999876 4677766666553 244433 3333 4788999888 99998874
No 348
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=45.45 E-value=1e+02 Score=34.82 Aligned_cols=177 Identities=15% Similarity=0.208 Sum_probs=97.9
Q ss_pred EEEEeeCcEec-cCceeeeCCCccCCCCCCHhhH-HHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEe
Q 010211 238 KCIVVDGGELK-SRRHLNVRGKSANLPSITDKDW-EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKI 315 (515)
Q Consensus 238 ~~~V~~gG~L~-s~KgVnlpg~~~~lp~ltekD~-~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKI 315 (515)
.+.+-.||.-. =++.+++|=+.+.+ |..|+ +.|..+-.++-.+-.++|-.....+..+.+++ +-++.++.--
T Consensus 56 dviIsrG~ta~~i~~~~~iPVv~i~~---s~~Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll---~~~i~~~~~~ 129 (526)
T TIGR02329 56 DVVVAGGSNGAYLKSRLSLPVIVIKP---TGFDVMQALARARRIASSIGVVTHQDTPPALRRFQAAF---NLDIVQRSYV 129 (526)
T ss_pred cEEEECchHHHHHHHhCCCCEEEecC---ChhhHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHh---CCceEEEEec
Confidence 34444555422 23456788777654 66776 67777777777777788877777777788877 4566665444
Q ss_pred cChhhhhcHHHHHhh-cCeeEEcCC---cccccCCC--------CCHHHHHHHHHHHHHhcC------------CcEEEE
Q 010211 316 ESADSIPNLHSIISA-SDGAMVARG---DLGAELPI--------EDVPLLQEDIIRRCRSMQ------------KPVIVA 371 (515)
Q Consensus 316 Et~~aveNldeIl~~-sDgImIgrg---DLg~elg~--------e~v~~aqk~Ii~~c~~aG------------KPvivA 371 (515)
+..++-.-+.++-+. .+ ++||.+ +++-++|+ +.+..+.++.++.++... +. ..+
T Consensus 130 ~~~e~~~~~~~l~~~G~~-~viG~~~~~~~A~~~gl~~ili~s~esi~~a~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~ 207 (526)
T TIGR02329 130 TEEDARSCVNDLRARGIG-AVVGAGLITDLAEQAGLHGVFLYSADSVRQAFDDALDVARATRLRQAATLRSATRNQ-LRT 207 (526)
T ss_pred CHHHHHHHHHHHHHCCCC-EEECChHHHHHHHHcCCceEEEecHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhh-hcc
Confidence 444555555555554 43 344543 45555665 334444444444333111 11 122
Q ss_pred eccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHHHH
Q 010211 372 TNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTV 425 (515)
Q Consensus 372 TqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~I 425 (515)
..-++.|+.. .|...++..-+..+...---||+.||+-.||-- ..+.++.-
T Consensus 208 ~~~f~~iiG~-S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~--lA~~IH~~ 258 (526)
T TIGR02329 208 RYRLDDLLGA-SAPMEQVRALVRLYARSDATVLILGESGTGKEL--VAQAIHQL 258 (526)
T ss_pred ccchhheeeC-CHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHH--HHHHHHHh
Confidence 2234444332 333333444444455555679999999999953 34445543
No 349
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=45.38 E-value=1e+02 Score=30.32 Aligned_cols=65 Identities=17% Similarity=0.233 Sum_probs=45.7
Q ss_pred HHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhc-CCcEEEEe
Q 010211 297 ELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSM-QKPVIVAT 372 (515)
Q Consensus 297 ~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~a-GKPvivAT 372 (515)
.+++.+.+.|..+.+-+.-|.... +|++++++-.|.|+-+ .+.. .....+.+.|.++ ++|++.++
T Consensus 85 ~a~~~l~~lnp~v~v~~~~~~i~~-~~~~~~~~~~DvVI~a---------~D~~-~~r~~l~~~~~~~~~~p~I~~~ 150 (212)
T PRK08644 85 ALKENLLEINPFVEIEAHNEKIDE-DNIEELFKDCDIVVEA---------FDNA-ETKAMLVETVLEHPGKKLVAAS 150 (212)
T ss_pred HHHHHHHHHCCCCEEEEEeeecCH-HHHHHHHcCCCEEEEC---------CCCH-HHHHHHHHHHHHhCCCCEEEee
Confidence 456667777887777666555544 5778888778877766 2233 3455778899998 99999874
No 350
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.27 E-value=28 Score=31.10 Aligned_cols=30 Identities=13% Similarity=0.304 Sum_probs=24.1
Q ss_pred ecccccccccCcCCEEEEeCCeeEEEEEEEe
Q 010211 203 VNYDDFVNDVEVGDILLVDGGMMSLAVKSKT 233 (515)
Q Consensus 203 v~~~~l~~~v~~Gd~IliDDG~I~l~V~~~~ 233 (515)
++++. ...+++||+|.+..+++..+|+++.
T Consensus 26 l~d~k-rr~ik~GD~IiF~~~~l~v~V~~vr 55 (111)
T COG4043 26 LADPK-RRQIKPGDKIIFNGDKLKVEVIDVR 55 (111)
T ss_pred ecCHh-hcCCCCCCEEEEcCCeeEEEEEEEe
Confidence 44444 3689999999999999999998764
No 351
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=45.18 E-value=1.9e+02 Score=29.60 Aligned_cols=96 Identities=16% Similarity=0.048 Sum_probs=56.9
Q ss_pred HHHHHh-h-cCeeEEcCCcc--cccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHH-HhHHHHHHHh
Q 010211 324 LHSIIS-A-SDGAMVARGDL--GAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE-VSDIAIAVRE 398 (515)
Q Consensus 324 ldeIl~-~-sDgImIgrgDL--g~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAE-v~DvanaV~~ 398 (515)
++..++ . +|||+++ |=- ...|..++-..+.+.+++.+. -.+||+.. .+..+-.| +...-.+-..
T Consensus 30 i~~l~~~~Gv~gi~v~-GstGE~~~Ls~eEr~~~~~~~~~~~~-~~~~viag---------vg~~~t~~ai~~a~~a~~~ 98 (293)
T PRK04147 30 VRFNIEKQGIDGLYVG-GSTGEAFLLSTEEKKQVLEIVAEEAK-GKVKLIAQ---------VGSVNTAEAQELAKYATEL 98 (293)
T ss_pred HHHHHhcCCCCEEEEC-CCccccccCCHHHHHHHHHHHHHHhC-CCCCEEec---------CCCCCHHHHHHHHHHHHHc
Confidence 355555 4 8999986 211 122223455555556666554 23677763 24444444 5556677889
Q ss_pred CCcEEeecccccCCCCHHHHHHHHHHHHHHHh
Q 010211 399 GADAVMLSGETAHGKFPLKAVKVMHTVALRTE 430 (515)
Q Consensus 399 G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE 430 (515)
|+|++|+..=--...-+-+-++...+|+..+.
T Consensus 99 Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~ 130 (293)
T PRK04147 99 GYDAISAVTPFYYPFSFEEICDYYREIIDSAD 130 (293)
T ss_pred CCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCC
Confidence 99999997432223234677888888887754
No 352
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=45.06 E-value=46 Score=34.67 Aligned_cols=64 Identities=11% Similarity=0.049 Sum_probs=47.6
Q ss_pred hHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhh--hcHHHHHhh-cCeeEEc
Q 010211 269 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSI--PNLHSIISA-SDGAMVA 337 (515)
Q Consensus 269 D~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~av--eNldeIl~~-sDgImIg 337 (515)
..++++.+++.|+|.|.+=. -++++++++.+.+++.+.++ ++|---|+ +|+.++++. +|.|.+|
T Consensus 198 tleqa~ea~~agaDiI~LDn-~~~e~l~~av~~~~~~~~~~----~leaSGGI~~~ni~~yA~tGvD~Is~g 264 (284)
T PRK06096 198 TPKEAIAALRAQPDVLQLDK-FSPQQATEIAQIAPSLAPHC----TLSLAGGINLNTLKNYADCGIRLFITS 264 (284)
T ss_pred CHHHHHHHHHcCCCEEEECC-CCHHHHHHHHHHhhccCCCe----EEEEECCCCHHHHHHHHhcCCCEEEEC
Confidence 45666777899999999975 47889988888876544443 46655554 588888887 8999886
No 353
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=44.56 E-value=2.1e+02 Score=33.63 Aligned_cols=24 Identities=13% Similarity=0.351 Sum_probs=17.3
Q ss_pred CCCHhhHHHh--------hcchhcCCcEEEec
Q 010211 264 SITDKDWEDI--------KFGVDNQVDFYAVS 287 (515)
Q Consensus 264 ~ltekD~~dI--------~~al~~gvD~ValS 287 (515)
.+|..|++.+ +.+.+.|+|+|-+.
T Consensus 540 ~mt~~eI~~~i~~f~~aA~~a~~aGfDgveih 571 (765)
T PRK08255 540 EMTRADMDRVRDDFVAAARRAAEAGFDWLELH 571 (765)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 5788888666 24467899999663
No 354
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=44.40 E-value=55 Score=34.20 Aligned_cols=65 Identities=9% Similarity=0.051 Sum_probs=47.8
Q ss_pred hHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhh--hcHHHHHhh-cCeeEEcC
Q 010211 269 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSI--PNLHSIISA-SDGAMVAR 338 (515)
Q Consensus 269 D~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~av--eNldeIl~~-sDgImIgr 338 (515)
..+++..+++.|+|.|.+=.. +++++++..+.++..+.++ +||---|+ +|+.+.++. +|+|-+|.
T Consensus 208 tl~ea~eal~~gaDiI~LDnm-~~e~vk~av~~~~~~~~~v----~ieaSGGI~~~ni~~yA~tGvD~Is~ga 275 (289)
T PRK07896 208 SLEQLDEVLAEGAELVLLDNF-PVWQTQEAVQRRDARAPTV----LLESSGGLTLDTAAAYAETGVDYLAVGA 275 (289)
T ss_pred CHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHhccCCCE----EEEEECCCCHHHHHHHHhcCCCEEEeCh
Confidence 345666678999999999765 4888888777766555554 46655554 588888888 89999873
No 355
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=44.34 E-value=5.1e+02 Score=29.22 Aligned_cols=160 Identities=16% Similarity=0.140 Sum_probs=93.4
Q ss_pred CCHhhHHHhh-cchhcCCcEEEecc-cCCHHHHHHHHHHHHhcCCCceEEEEecC-hhhhh-----cHHHHHhh-cCe--
Q 010211 265 ITDKDWEDIK-FGVDNQVDFYAVSF-VKDAKVVHELKDYLKSCNADIHVIVKIES-ADSIP-----NLHSIISA-SDG-- 333 (515)
Q Consensus 265 ltekD~~dI~-~al~~gvD~ValSf-Vrsa~dv~~vr~~l~~~~~~i~IIaKIEt-~~ave-----NldeIl~~-sDg-- 333 (515)
++.+++..|. .-.+.|+|.|=+.| .-++.|.+.++...+..-.+..+.+..=. ..++. .++..+.. .|.
T Consensus 24 ~s~e~Kl~ia~~L~~~Gvd~IEvG~p~as~~d~~~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d~~~e~~~~~g~~~i~ 103 (524)
T PRK12344 24 FSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFKRAKELKLKHAKLAAFGSTRRAGVSAEEDPNLQALLDAGTPVVT 103 (524)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCcCChhHHHHHHHHHHhCCCCcEEEEEeeccccCCCcccHHHHHHHHhCCCCEEE
Confidence 4667775554 44567999998866 45677766665554321123444443211 12221 22333333 344
Q ss_pred eEEcCCccccc----CCCCCHHHHHHHHHHHHHhcCCcEEEEec-cccccccCCCcChHHHhHHHH-HHHhCCcEEeecc
Q 010211 334 AMVARGDLGAE----LPIEDVPLLQEDIIRRCRSMQKPVIVATN-MLESMIDHPTPTRAEVSDIAI-AVREGADAVMLSG 407 (515)
Q Consensus 334 ImIgrgDLg~e----lg~e~v~~aqk~Ii~~c~~aGKPvivATq-mLeSMi~~~~PtrAEv~Dvan-aV~~G~D~vmLs~ 407 (515)
+++.-.|+-.+ +..+++....++.++.++++|..|-+.+. +.+ ..+-+..-+.+++. +...|+|.+.|.
T Consensus 104 i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~D----a~r~d~~~l~~~~~~~~~~Gad~i~l~- 178 (524)
T PRK12344 104 IFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFD----GYKANPEYALATLKAAAEAGADWVVLC- 178 (524)
T ss_pred EEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccccccc----cccCCHHHHHHHHHHHHhCCCCeEEEc-
Confidence 44444454222 22367788888999999999998765321 111 11112222444443 346799999985
Q ss_pred cccCCCCHHHHHHHHHHHHHHH
Q 010211 408 ETAHGKFPLKAVKVMHTVALRT 429 (515)
Q Consensus 408 ETa~G~yPveaV~~m~~I~~~a 429 (515)
+|.=..+|.+.-+.+..+.+..
T Consensus 179 DTvG~~~P~~v~~li~~l~~~~ 200 (524)
T PRK12344 179 DTNGGTLPHEVAEIVAEVRAAP 200 (524)
T ss_pred cCCCCcCHHHHHHHHHHHHHhc
Confidence 8888889999999888888776
No 356
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=44.24 E-value=2.9e+02 Score=28.88 Aligned_cols=129 Identities=16% Similarity=0.184 Sum_probs=68.9
Q ss_pred cchhcCCcEEEecccCCHHHHHH---HHHHHHhcCCCceEEEEecC--hhhhhcHHHHHhh--cCeeEEcCCcccccCCC
Q 010211 275 FGVDNQVDFYAVSFVKDAKVVHE---LKDYLKSCNADIHVIVKIES--ADSIPNLHSIISA--SDGAMVARGDLGAELPI 347 (515)
Q Consensus 275 ~al~~gvD~ValSfVrsa~dv~~---vr~~l~~~~~~i~IIaKIEt--~~aveNldeIl~~--sDgImIgrgDLg~elg~ 347 (515)
.+.++|++++.-.|+.....+.. -+..+....+...+++||-. ++.+...-+++.. .|+| ||-+.+|.
T Consensus 28 l~~~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~g~~~~~~~~aa~~~~~~g~d~I-----dlN~gCP~ 102 (321)
T PRK10415 28 LCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQII-----DINMGCPA 102 (321)
T ss_pred HHHHHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEeCCCHHHHHHHHHHHHHCCCCEE-----EEeCCCCH
Confidence 34577888877788776443321 11222222344566788853 3333222222222 3444 44455553
Q ss_pred CC------------HHHHHHHHHHHHHh-cCCcEEEEeccccccccCCCcChHHHhHHHH-HHHhCCcEEeecccccCCC
Q 010211 348 ED------------VPLLQEDIIRRCRS-MQKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAVMLSGETAHGK 413 (515)
Q Consensus 348 e~------------v~~aqk~Ii~~c~~-aGKPvivATqmLeSMi~~~~PtrAEv~Dvan-aV~~G~D~vmLs~ETa~G~ 413 (515)
++ =+...++|+++.++ .++|+.+=.. ..-.++..+..+.+. +...|+|.+.+.+-|..+.
T Consensus 103 ~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR------~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~ 176 (321)
T PRK10415 103 KKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIR------TGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACL 176 (321)
T ss_pred HHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEE------ccccCCcchHHHHHHHHHHhCCCEEEEecCccccc
Confidence 21 25566777777654 4789886321 111233333445554 4567999999998886544
Q ss_pred C
Q 010211 414 F 414 (515)
Q Consensus 414 y 414 (515)
|
T Consensus 177 ~ 177 (321)
T PRK10415 177 F 177 (321)
T ss_pred c
Confidence 4
No 357
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=44.18 E-value=60 Score=34.21 Aligned_cols=64 Identities=23% Similarity=0.380 Sum_probs=39.6
Q ss_pred hcchhcCCcEEEecccCCHHH-------HHHHHHHHHhcCCCceEEEEecCh--hhhhcHHHHHhh--cCeeEEcCCccc
Q 010211 274 KFGVDNQVDFYAVSFVKDAKV-------VHELKDYLKSCNADIHVIVKIESA--DSIPNLHSIISA--SDGAMVARGDLG 342 (515)
Q Consensus 274 ~~al~~gvD~ValSfVrsa~d-------v~~vr~~l~~~~~~i~IIaKIEt~--~aveNldeIl~~--sDgImIgrgDLg 342 (515)
+.+.+.|++.+.+ +.|++.+ +..++++-+.. .++.||+ +- ...+...+.++. +||+|||||=|+
T Consensus 159 ~~~~~~g~~~ltV-HgRtr~~~y~~~ad~~~I~~vk~~~-~~ipvi~---NGdI~s~~~a~~~l~~tg~DgVMigRga~~ 233 (323)
T COG0042 159 RILEDAGADALTV-HGRTRAQGYLGPADWDYIKELKEAV-PSIPVIA---NGDIKSLEDAKEMLEYTGADGVMIGRGALG 233 (323)
T ss_pred HHHHhcCCCEEEE-ecccHHhcCCCccCHHHHHHHHHhC-CCCeEEe---CCCcCCHHHHHHHHHhhCCCEEEEcHHHcc
Confidence 3445678999887 4666543 44444433322 2366666 33 244556677776 899999999664
No 358
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=43.69 E-value=1.7e+02 Score=29.88 Aligned_cols=95 Identities=21% Similarity=0.270 Sum_probs=54.8
Q ss_pred HHHHhh-cCeeEEcCCcc--cccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHH-HhHHHHHHHhCC
Q 010211 325 HSIISA-SDGAMVARGDL--GAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE-VSDIAIAVREGA 400 (515)
Q Consensus 325 deIl~~-sDgImIgrgDL--g~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAE-v~DvanaV~~G~ 400 (515)
+-+++. +||+++. |-- +..+..++-..+.+.+++.+ +-..|+++.+ ...+-.| +...-.+-..|+
T Consensus 29 ~~l~~~Gv~gi~~~-Gs~GE~~~ls~~Er~~~~~~~~~~~-~~~~~vi~gv---------~~~~~~~~i~~a~~a~~~G~ 97 (292)
T PRK03170 29 DYLIANGTDGLVVV-GTTGESPTLTHEEHEELIRAVVEAV-NGRVPVIAGT---------GSNSTAEAIELTKFAEKAGA 97 (292)
T ss_pred HHHHHcCCCEEEEC-CcCCccccCCHHHHHHHHHHHHHHh-CCCCcEEeec---------CCchHHHHHHHHHHHHHcCC
Confidence 444444 8999974 221 12223344444555555544 2236777632 3333344 444445566699
Q ss_pred cEEeecccccCCCCHHHHHHHHHHHHHHHh
Q 010211 401 DAVMLSGETAHGKFPLKAVKVMHTVALRTE 430 (515)
Q Consensus 401 D~vmLs~ETa~G~yPveaV~~m~~I~~~aE 430 (515)
|++|+..=.-....+-+.++....|+..++
T Consensus 98 d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~ 127 (292)
T PRK03170 98 DGALVVTPYYNKPTQEGLYQHFKAIAEATD 127 (292)
T ss_pred CEEEECCCcCCCCCHHHHHHHHHHHHhcCC
Confidence 999997544334446788899999988765
No 359
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=43.56 E-value=2.4e+02 Score=28.28 Aligned_cols=117 Identities=20% Similarity=0.196 Sum_probs=65.3
Q ss_pred HHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeE-EcC-CcccccCCC
Q 010211 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAM-VAR-GDLGAELPI 347 (515)
Q Consensus 271 ~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgIm-Igr-gDLg~elg~ 347 (515)
+.++.+.+.|+|++.++-.. .++...+.+.+++.|-+..++..=.|+ .+.++.|++. .|-|. +++ |=-|..-++
T Consensus 95 ~fi~~~~~aG~~giiipDl~-~ee~~~~~~~~~~~g~~~i~~i~P~T~--~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~ 171 (242)
T cd04724 95 RFLRDAKEAGVDGLIIPDLP-PEEAEEFREAAKEYGLDLIFLVAPTTP--DERIKKIAELASGFIYYVSRTGVTGARTEL 171 (242)
T ss_pred HHHHHHHHCCCcEEEECCCC-HHHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHhhCCCCEEEEeCCCCCCCccCC
Confidence 34566678899999995432 467777888888877666555555553 5568888884 45443 332 112222221
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEee
Q 010211 348 EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 405 (515)
Q Consensus 348 e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmL 405 (515)
.....+.+-+..+...+|+.+. .+.-+.+.+. ..+.. +|++..
T Consensus 172 --~~~~~~~i~~lr~~~~~pI~vg---------gGI~~~e~~~---~~~~~-ADgvVv 214 (242)
T cd04724 172 --PDDLKELIKRIRKYTDLPIAVG---------FGISTPEQAA---EVAKY-ADGVIV 214 (242)
T ss_pred --ChhHHHHHHHHHhcCCCcEEEE---------ccCCCHHHHH---HHHcc-CCEEEE
Confidence 1222233333333347898884 3443333333 44444 787776
No 360
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=43.50 E-value=79 Score=31.43 Aligned_cols=86 Identities=16% Similarity=0.274 Sum_probs=53.2
Q ss_pred hhhcHHHHHhh-------cCeeEEcCCcccccC-CC----CCHHHHHHHHHHHHHhcCCcEEEEeccccccccC--CCcC
Q 010211 320 SIPNLHSIISA-------SDGAMVARGDLGAEL-PI----EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDH--PTPT 385 (515)
Q Consensus 320 aveNldeIl~~-------sDgImIgrgDLg~el-g~----e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~--~~Pt 385 (515)
.+++|.+.+.. .|.|||.--.|-..- +. .++..+-+++-..|++.+.||++++|+=...... ..|+
T Consensus 113 ~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~~sQlnr~~~~~~~~~p~ 192 (259)
T PF03796_consen 113 TIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKELNIPVIALSQLNREAEDREDKRPS 192 (259)
T ss_dssp BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHHTSEEEEEEEBSGGGGGSSSCS--
T ss_pred CHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHcCCeEEEccccChhhhcccccccc
Confidence 45555544442 367887654442221 11 3466677788888999999999999987665443 3565
Q ss_pred hHHHhHHHHHHHhCCcEEeec
Q 010211 386 RAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 386 rAEv~DvanaV~~G~D~vmLs 406 (515)
.+++.+ ...+.+.+|.+|+-
T Consensus 193 l~dl~~-sg~Ie~~AD~vl~l 212 (259)
T PF03796_consen 193 LSDLRE-SGAIEQDADVVLFL 212 (259)
T ss_dssp HHHHCS-TSSHHHH-SEEEEE
T ss_pred hhhhhh-hHHHHHHHhhhhhh
Confidence 554322 35688889999974
No 361
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=43.18 E-value=2.7e+02 Score=29.91 Aligned_cols=122 Identities=14% Similarity=0.131 Sum_probs=79.1
Q ss_pred CceEEEEecChhhhhcHHHHHhh-cCeeEEcCCccc---ccCCCCCHHHHHHHHHHHHHhcCCcEEE-Eeccc-------
Q 010211 308 DIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLG---AELPIEDVPLLQEDIIRRCRSMQKPVIV-ATNML------- 375 (515)
Q Consensus 308 ~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg---~elg~e~v~~aqk~Ii~~c~~aGKPviv-ATqmL------- 375 (515)
.+.|.........++.+.+-+.. .+.|||.-..|. ..+++++=...-+++++.|+.+|.+|=- -.++-
T Consensus 75 ~VPVaLHLDHg~~~e~i~~Ai~~GFtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVEaELG~igg~e~~~~ 154 (347)
T PRK13399 75 DIPICLHQDHGNSPATCQSAIRSGFTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVEGELGCLGSLETGEA 154 (347)
T ss_pred CCcEEEECCCCCCHHHHHHHHhcCCCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEEEEeeeccCcccccc
Confidence 47899999998877766666655 789999866553 3445788888899999999999998721 00010
Q ss_pred ---cccccCC----CcChHHHhHHHHHHH-hCCcEEeecccccCCCCH-----H---HHHHHHHHHHHHH
Q 010211 376 ---ESMIDHP----TPTRAEVSDIAIAVR-EGADAVMLSGETAHGKFP-----L---KAVKVMHTVALRT 429 (515)
Q Consensus 376 ---eSMi~~~----~PtrAEv~DvanaV~-~G~D~vmLs~ETa~G~yP-----v---eaV~~m~~I~~~a 429 (515)
+...... .-......+...|+. -|+|++..+--|+.|.|+ . --...+.+|..+.
T Consensus 155 g~ed~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v 224 (347)
T PRK13399 155 GEEDGVGAEGKLSHDQMLTDPDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARL 224 (347)
T ss_pred cccCCccccccccccccCCCHHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhc
Confidence 1100000 000111234456775 499999999999999994 2 3345666665555
No 362
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=42.92 E-value=2.7e+02 Score=28.94 Aligned_cols=133 Identities=14% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcE--
Q 010211 292 AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPV-- 368 (515)
Q Consensus 292 a~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPv-- 368 (515)
.+.+..+-..+.+ +..++|...+....-++.+.+=+.. .+.||+. +-.+++++=...-+++++.|++.|.+|
T Consensus 57 ~~~~~~~~~~~a~-~~~VPValHLDHg~~~e~i~~ai~~GFtSVM~D----gS~lp~eeNi~~T~~vv~~Ah~~gv~VEa 131 (282)
T TIGR01858 57 TEYIVALCSAAST-TYNMPLALHLDHHESLDDIRQKVHAGVRSAMID----GSHFPFAQNVKLVKEVVDFCHRQDCSVEA 131 (282)
T ss_pred HHHHHHHHHHHHH-HCCCCEEEECCCCCCHHHHHHHHHcCCCEEeec----CCCCCHHHHHHHHHHHHHHHHHcCCeEEE
Q ss_pred --EEEeccccc-cccCCCcChHHHhHHHHHHH-hCCcEEeecccccCCCC---HHHHHHHHHHHHHHH
Q 010211 369 --IVATNMLES-MIDHPTPTRAEVSDIAIAVR-EGADAVMLSGETAHGKF---PLKAVKVMHTVALRT 429 (515)
Q Consensus 369 --ivATqmLeS-Mi~~~~PtrAEv~DvanaV~-~G~D~vmLs~ETa~G~y---PveaV~~m~~I~~~a 429 (515)
|.-..-=+. ......-......+...|+. -|+|++-.+--|+.|.| |.--...|.+|....
T Consensus 132 ElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~ 199 (282)
T TIGR01858 132 ELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVV 199 (282)
T ss_pred EEEecCCccCCCccccchhccCCHHHHHHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHHHHh
No 363
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=42.82 E-value=38 Score=37.62 Aligned_cols=50 Identities=18% Similarity=0.317 Sum_probs=41.2
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHH
Q 010211 100 KTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKE 149 (515)
Q Consensus 100 ~TKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~ 149 (515)
+..+=+-+|.+.+..+.++.|+++|+++.=|..+||..+...++++.||+
T Consensus 213 rl~Vgaav~~~~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~ 262 (475)
T TIGR01303 213 RLRIGAAVGINGDVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRA 262 (475)
T ss_pred CceehheeeeCccHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHH
Confidence 44445556777788999999999999999999999999877777777775
No 364
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=42.67 E-value=86 Score=31.70 Aligned_cols=70 Identities=20% Similarity=0.348 Sum_probs=42.6
Q ss_pred EEEEe--cChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChH
Q 010211 311 VIVKI--ESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRA 387 (515)
Q Consensus 311 IIaKI--Et~~aveNldeIl~~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrA 387 (515)
-+.|| +...--+.++.+++. .|+|||| |=+++. .+...+++++.++..+|++. + |...
T Consensus 10 h~~liDP~k~~~~~~~~~~~~~gtdai~vG-GS~~vt------~~~~~~~v~~ik~~~lPvil---------f---p~~~ 70 (232)
T PRK04169 10 HVTLLDPDKPLPDEALEAICESGTDAIIVG-GSDGVT------EENVDELVKAIKEYDLPVIL---------F---PGNI 70 (232)
T ss_pred EEEEECCCCCCCHHHHHHHHhcCCCEEEEc-CCCccc------hHHHHHHHHHHhcCCCCEEE---------e---CCCc
Confidence 34455 333223334566665 8999999 433333 23456667777778899998 2 3322
Q ss_pred HHhHHHHHHHhCCcEEee
Q 010211 388 EVSDIAIAVREGADAVML 405 (515)
Q Consensus 388 Ev~DvanaV~~G~D~vmL 405 (515)
+.+..++|++++
T Consensus 71 ------~~i~~~aDa~l~ 82 (232)
T PRK04169 71 ------EGISPGADAYLF 82 (232)
T ss_pred ------cccCcCCCEEEE
Confidence 346677998874
No 365
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=42.61 E-value=4.3e+02 Score=27.85 Aligned_cols=132 Identities=19% Similarity=0.155 Sum_probs=73.6
Q ss_pred chhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh--cCeeEEcC-Ccccc---------
Q 010211 276 GVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA--SDGAMVAR-GDLGA--------- 343 (515)
Q Consensus 276 al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~--sDgImIgr-gDLg~--------- 343 (515)
..+.|+|+|..|-+.++.| ++-..++.. -++++++ +..|++|-+.. .-.=||+- |+.|.
T Consensus 92 L~~~GvDiID~Te~lrpad--~~~~~~K~~-f~~~fma------d~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h 162 (293)
T PRK04180 92 LEALGVDYIDESEVLTPAD--EEYHIDKWD-FTVPFVC------GARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRH 162 (293)
T ss_pred HHHcCCCEEeccCCCCchH--HHHHHHHHH-cCCCEEc------cCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHH
Confidence 3467999999999888843 333334332 2567776 55566666554 12223332 11110
Q ss_pred ----------cCCC--CCHHH-------HHHHHHHHHHhcCCcEE-EEeccccccccCCCcChHHHhHHHHHHHhCCcEE
Q 010211 344 ----------ELPI--EDVPL-------LQEDIIRRCRSMQKPVI-VATNMLESMIDHPTPTRAEVSDIAIAVREGADAV 403 (515)
Q Consensus 344 ----------elg~--e~v~~-------aqk~Ii~~c~~aGKPvi-vATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~v 403 (515)
=.|+ +++.. -.+.+-+.++....||+ +| ..+.-|.+. +..++..|+|++
T Consensus 163 ~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~A--------eGGI~TPed---aa~vme~GAdgV 231 (293)
T PRK04180 163 MRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPVVNFA--------AGGIATPAD---AALMMQLGADGV 231 (293)
T ss_pred HHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEE--------eCCCCCHHH---HHHHHHhCCCEE
Confidence 0112 11111 01122233344568997 33 344444443 446677899999
Q ss_pred eecccccCCCCHHHHHHHHHHHHH
Q 010211 404 MLSGETAHGKFPLKAVKVMHTVAL 427 (515)
Q Consensus 404 mLs~ETa~G~yPveaV~~m~~I~~ 427 (515)
++.+.-.....|.+.++.+.+...
T Consensus 232 aVGSaI~ks~dP~~~akafv~ai~ 255 (293)
T PRK04180 232 FVGSGIFKSGDPEKRARAIVEATT 255 (293)
T ss_pred EEcHHhhcCCCHHHHHHHHHHHHH
Confidence 998777777789888887766543
No 366
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=42.56 E-value=3.6e+02 Score=28.81 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=17.5
Q ss_pred CCCCHhhHHHh--------hcchhcCCcEEEec
Q 010211 263 PSITDKDWEDI--------KFGVDNQVDFYAVS 287 (515)
Q Consensus 263 p~ltekD~~dI--------~~al~~gvD~ValS 287 (515)
..+|..|++.+ +.+.+.|+|+|=+.
T Consensus 138 ~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVEih 170 (370)
T cd02929 138 REMDKDDIKRVRRWYVDAALRARDAGFDIVYVY 170 (370)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 45788888666 24456899998653
No 367
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=42.17 E-value=60 Score=33.65 Aligned_cols=72 Identities=19% Similarity=0.201 Sum_probs=0.0
Q ss_pred hHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhh--cHHHHHhh-cCeeEEc------CC
Q 010211 269 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIP--NLHSIISA-SDGAMVA------RG 339 (515)
Q Consensus 269 D~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~ave--NldeIl~~-sDgImIg------rg 339 (515)
..++++.+++.|+|.|.+=.. +++++.+..+++++.+.++ +||=.-|+. |+.++++. +|.|.+| |-
T Consensus 197 tleea~ea~~~GaDiI~lDn~-~~e~l~~~v~~l~~~~~~~----~leasGGI~~~ni~~ya~~GvD~is~gal~~a~~~ 271 (277)
T TIGR01334 197 TIEQALTVLQASPDILQLDKF-TPQQLHHLHERLKFFDHIP----TLAAAGGINPENIADYIEAGIDLFITSAPYYAAPC 271 (277)
T ss_pred CHHHHHHHHHcCcCEEEECCC-CHHHHHHHHHHHhccCCCE----EEEEECCCCHHHHHHHHhcCCCEEEeCcceecCcc
Q ss_pred cccccC
Q 010211 340 DLGAEL 345 (515)
Q Consensus 340 DLg~el 345 (515)
|+++.+
T Consensus 272 Di~~~~ 277 (277)
T TIGR01334 272 DIKVKL 277 (277)
T ss_pred ceEEeC
No 368
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=42.17 E-value=41 Score=34.44 Aligned_cols=64 Identities=14% Similarity=0.221 Sum_probs=45.2
Q ss_pred hhHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhh--hcHHHHHhh-cCeeEEc
Q 010211 268 KDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSI--PNLHSIISA-SDGAMVA 337 (515)
Q Consensus 268 kD~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~av--eNldeIl~~-sDgImIg 337 (515)
+..+++..+++.|+|+|.+..+ ++++++++.++++.. .+++ ||=--|+ +|+.++++. +|+|-+|
T Consensus 189 ~t~eea~~A~~~gaD~I~ld~~-~~e~l~~~v~~i~~~-~~i~----i~asGGIt~~ni~~~a~~Gad~Isvg 255 (269)
T cd01568 189 ETLEEAEEALEAGADIIMLDNM-SPEELKEAVKLLKGL-PRVL----LEASGGITLENIRAYAETGVDVISTG 255 (269)
T ss_pred CCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhccC-CCeE----EEEECCCCHHHHHHHHHcCCCEEEEc
Confidence 3456666777889999999765 568887777777543 2333 4444444 789999888 9999885
No 369
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=42.13 E-value=1.2e+02 Score=27.15 Aligned_cols=62 Identities=19% Similarity=0.266 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEE
Q 010211 294 VVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIV 370 (515)
Q Consensus 294 dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPviv 370 (515)
=+...+++.+..|.++.|.|.=|+. +++-+...|.+++| |.+....+++-+.+...|+||-+
T Consensus 17 LV~Km~~aA~~kg~~~~I~A~s~~e-----~~~~~~~~DvvLlG----------PQv~y~~~~~~~~~~~~giPV~v 78 (102)
T COG1440 17 LVTKMKKAAESKGKDVTIEAYSETE-----LSEYIDNADVVLLG----------PQVRYMLKQLKEAAEEKGIPVEV 78 (102)
T ss_pred HHHHHHHHHHhCCCceEEEEechhH-----HHHhhhcCCEEEEC----------hHHHHHHHHHHHHhcccCCCeEE
Confidence 4667788888888888888766553 44555579999998 68999999999999999999976
No 370
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=41.98 E-value=2e+02 Score=30.49 Aligned_cols=24 Identities=8% Similarity=0.165 Sum_probs=17.5
Q ss_pred CCCHhhHHHh--------hcchhcCCcEEEec
Q 010211 264 SITDKDWEDI--------KFGVDNQVDFYAVS 287 (515)
Q Consensus 264 ~ltekD~~dI--------~~al~~gvD~ValS 287 (515)
.+|..|++.+ +.+.+.|+|+|=+-
T Consensus 131 ~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih 162 (337)
T PRK13523 131 EMTKEQIKETVLAFKQAAVRAKEAGFDVIEIH 162 (337)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 5788888777 24456899998663
No 371
>PF02599 CsrA: Global regulator protein family; InterPro: IPR003751 The RNA-binding protein CsrA (carbon storage regulator) is a new kind of global regulator, which facilitates specific mRNA decay []. CsrA is entirely contained within a globular complex of approximately 18 CsrA-H6 subunits and a single RNA, CsrB. CsrA binds to the CsrB RNA molecule to form the Csr regulatory system which has a strong negative regulatory effect on glycogen biosynthesis, glyconeogenesis and glycogen catabolism and a positive regulatory effect on glycolysis [].; GO: 0003723 RNA binding, 0006109 regulation of carbohydrate metabolic process, 0006402 mRNA catabolic process; PDB: 1Y00_B 2JPP_A 1T3O_A 1VPZ_A.
Probab=41.64 E-value=57 Score=25.74 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=23.7
Q ss_pred cCcCCEEEEeCCeeEEEEEEEeCCeEEEEEe
Q 010211 212 VEVGDILLVDGGMMSLAVKSKTKDLVKCIVV 242 (515)
Q Consensus 212 v~~Gd~IliDDG~I~l~V~~~~~~~v~~~V~ 242 (515)
-++|..|.|+| .|..+|.++.++.++.-+.
T Consensus 6 Rk~gE~I~Ig~-~I~I~Vl~i~~~~VklgI~ 35 (54)
T PF02599_consen 6 RKVGESIVIGD-DIEITVLEISGGQVKLGID 35 (54)
T ss_dssp EETT-EEEETT-TEEEEEEEEETTEEEEEEE
T ss_pred ccCCCEEEECC-CEEEEEEEEcCCEEEEEEE
Confidence 37899999987 8999999999888765443
No 372
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=41.61 E-value=1.8e+02 Score=29.66 Aligned_cols=95 Identities=16% Similarity=0.070 Sum_probs=54.0
Q ss_pred HHHHHhh--cCeeEEcCCccc--ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHH-HhHHHHHHHh
Q 010211 324 LHSIISA--SDGAMVARGDLG--AELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE-VSDIAIAVRE 398 (515)
Q Consensus 324 ldeIl~~--sDgImIgrgDLg--~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAE-v~DvanaV~~ 398 (515)
++..++. +||+++. |=-| ..+..++-..+.+..++.+. -..|++.. ....+-.| +.....+...
T Consensus 27 i~~l~~~~Gv~gi~~~-GstGE~~~Lt~~Er~~~~~~~~~~~~-~~~~viag---------v~~~~~~~ai~~a~~a~~~ 95 (288)
T cd00954 27 VDYLIEKQGVDGLYVN-GSTGEGFLLSVEERKQIAEIVAEAAK-GKVTLIAH---------VGSLNLKESQELAKHAEEL 95 (288)
T ss_pred HHHHHhcCCCCEEEEC-cCCcCcccCCHHHHHHHHHHHHHHhC-CCCeEEec---------cCCCCHHHHHHHHHHHHHc
Confidence 4445555 7898885 2111 11222333333444444432 23577662 23334444 5556677889
Q ss_pred CCcEEeecccccCCCCHHHHHHHHHHHHHHH
Q 010211 399 GADAVMLSGETAHGKFPLKAVKVMHTVALRT 429 (515)
Q Consensus 399 G~D~vmLs~ETa~G~yPveaV~~m~~I~~~a 429 (515)
|+|++|+..---...-+-+-++....|+..+
T Consensus 96 Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~ 126 (288)
T cd00954 96 GYDAISAITPFYYKFSFEEIKDYYREIIAAA 126 (288)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHHHhc
Confidence 9999998644333333578888999998876
No 373
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=41.58 E-value=1.2e+02 Score=30.33 Aligned_cols=109 Identities=18% Similarity=0.195 Sum_probs=63.4
Q ss_pred EEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh----cCeeEEcCC--------cccccCCCC--
Q 010211 283 FYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARG--------DLGAELPIE-- 348 (515)
Q Consensus 283 ~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~----sDgImIgrg--------DLg~elg~e-- 348 (515)
.+++=...++++...+-+.+-+.|-+ .+=.-.-|+.+++.++++.+. .+.++||-| +..++.|.+
T Consensus 17 vi~Vvr~~~~~~a~~~~~al~~gGi~-~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~Fi 95 (222)
T PRK07114 17 MVPVFYHADVEVAKKVIKACYDGGAR-VFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFI 95 (222)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCC-EEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEE
Confidence 34444456666666665555554433 222344666777777766532 234666655 122222211
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 349 DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 349 ~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
--|..-..+++.|+++|.|.+= +.-|. +++..+...|+|.+=|=
T Consensus 96 VsP~~~~~v~~~~~~~~i~~iP-----------G~~Tp---sEi~~A~~~Ga~~vKlF 139 (222)
T PRK07114 96 VTPLFNPDIAKVCNRRKVPYSP-----------GCGSL---SEIGYAEELGCEIVKLF 139 (222)
T ss_pred ECCCCCHHHHHHHHHcCCCEeC-----------CCCCH---HHHHHHHHCCCCEEEEC
Confidence 1122447899999999999874 22222 34668899999998875
No 374
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=41.54 E-value=2.3e+02 Score=30.81 Aligned_cols=33 Identities=15% Similarity=0.248 Sum_probs=26.6
Q ss_pred EEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHH
Q 010211 102 KIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQ 141 (515)
Q Consensus 102 KIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~ 141 (515)
+++-|=||..-.+++++.|.+- ++.|-+++...
T Consensus 6 ~~Ll~PGP~~v~~~V~~am~~~-------~~~h~s~~F~~ 38 (383)
T COG0075 6 RLLLTPGPVPVPPRVLLAMARP-------MVGHRSPDFVG 38 (383)
T ss_pred ceeeeCCCCCCCHHHHHHhcCC-------CCCCCCHHHHH
Confidence 6888999999999999987665 57789986443
No 375
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=41.50 E-value=56 Score=32.72 Aligned_cols=60 Identities=17% Similarity=0.249 Sum_probs=36.2
Q ss_pred hhcchhcCCcEEEecccCC--HHHHHHHHHHHHhcCCCceEEE--EecChhhhhcHHHHHhh-cCeeEEcCC
Q 010211 273 IKFGVDNQVDFYAVSFVKD--AKVVHELKDYLKSCNADIHVIV--KIESADSIPNLHSIISA-SDGAMVARG 339 (515)
Q Consensus 273 I~~al~~gvD~ValSfVrs--a~dv~~vr~~l~~~~~~i~IIa--KIEt~~aveNldeIl~~-sDgImIgrg 339 (515)
.+...+.|+|+|-++--.. ..|+..+++.- .++.||+ -|.|.+- ..+.+.. +|+|||||+
T Consensus 158 a~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~----~~ipVIgnGgI~s~ed---a~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 158 ARLIEKAGADIIHVDAMDPGNHADLKKIRDIS----TELFIIGNNSVTTIES---AKEMFSYGADMVSVARA 222 (233)
T ss_pred HHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc----CCCEEEEECCcCCHHH---HHHHHHcCCCEEEEcCC
Confidence 3455678999886643221 23455555442 3577776 4555433 3444445 999999999
No 376
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=41.30 E-value=44 Score=30.08 Aligned_cols=44 Identities=18% Similarity=0.188 Sum_probs=34.2
Q ss_pred cccccccCcCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEeccC
Q 010211 206 DDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSR 250 (515)
Q Consensus 206 ~~l~~~v~~Gd~IliDDG~I~l~V~~~~~~~v~~~V~~gG~L~s~ 250 (515)
.++.+.+++||+|..-.|.+ -+|.+++++.+..++-.|-.++=.
T Consensus 33 ~~m~~~Lk~GD~VvT~gGi~-G~V~~I~d~~v~leia~gv~i~~~ 76 (109)
T PRK05886 33 IDLHESLQPGDRVHTTSGLQ-ATIVGITDDTVDLEIAPGVVTTWM 76 (109)
T ss_pred HHHHHhcCCCCEEEECCCeE-EEEEEEeCCEEEEEECCCeEEEEE
Confidence 46788999999999998855 457788888888887666666633
No 377
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=41.26 E-value=3.9e+02 Score=28.10 Aligned_cols=56 Identities=25% Similarity=0.296 Sum_probs=39.2
Q ss_pred HhcCCcEE-EEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHHHHHHH
Q 010211 362 RSMQKPVI-VATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALR 428 (515)
Q Consensus 362 ~~aGKPvi-vATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~ 428 (515)
+....||+ +| ..+.-|.+ |+..++..|+|+++..+.-.....|.+.++.+.+....
T Consensus 194 ~~~~iPVV~fA--------iGGI~TPe---dAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~ 250 (287)
T TIGR00343 194 KLGKLPVVNFA--------AGGVATPA---DAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTH 250 (287)
T ss_pred HhCCCCEEEec--------cCCCCCHH---HHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHH
Confidence 34468988 32 34444544 34567788999999987777777899988877765544
No 378
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=41.21 E-value=51 Score=29.35 Aligned_cols=42 Identities=24% Similarity=0.407 Sum_probs=30.8
Q ss_pred cccccccCcCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEec
Q 010211 206 DDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELK 248 (515)
Q Consensus 206 ~~l~~~v~~Gd~IliDDG~I~l~V~~~~~~~v~~~V~~gG~L~ 248 (515)
.++.+.+++||+|..-.|- .-+|.+++++.+..++-.|..++
T Consensus 47 ~~~~~~Lk~Gd~VvT~gGi-~G~Vv~i~~~~v~lei~~g~~i~ 88 (106)
T PRK05585 47 KKMLSSLAKGDEVVTNGGI-IGKVTKVSEDFVIIELNDDTEIK 88 (106)
T ss_pred HHHHHhcCCCCEEEECCCe-EEEEEEEeCCEEEEEECCCeEEE
Confidence 4677888999999888774 45677788888777775555554
No 379
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=41.09 E-value=2.5e+02 Score=30.49 Aligned_cols=93 Identities=20% Similarity=0.293 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEE-ecChhhhhcHHHHHhh-cCeeEEcCCcccccC--CCCCHHHHHHHHHHHHHhcCC
Q 010211 291 DAKVVHELKDYLKSCNADIHVIVK-IESADSIPNLHSIISA-SDGAMVARGDLGAEL--PIEDVPLLQEDIIRRCRSMQK 366 (515)
Q Consensus 291 sa~dv~~vr~~l~~~~~~i~IIaK-IEt~~aveNldeIl~~-sDgImIgrgDLg~el--g~e~v~~aqk~Ii~~c~~aGK 366 (515)
+-+++..+++.. +.++|+| |-+ .+.....++. +|+|.|.-.- |-.+ +.+ -..+..+|.+++. -..
T Consensus 241 tW~~i~~lr~~~-----~~pvivKgV~~---~~dA~~a~~~G~d~I~vsnhG-Gr~~d~~~~-t~~~L~ei~~~~~-~~~ 309 (383)
T cd03332 241 TWEDLAFLREWT-----DLPIVLKGILH---PDDARRAVEAGVDGVVVSNHG-GRQVDGSIA-ALDALPEIVEAVG-DRL 309 (383)
T ss_pred CHHHHHHHHHhc-----CCCEEEecCCC---HHHHHHHHHCCCCEEEEcCCC-CcCCCCCcC-HHHHHHHHHHHhc-CCC
Confidence 445666666543 4678887 322 2222333333 7898886211 1111 222 2223334433332 248
Q ss_pred cEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 367 PVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 367 PvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
|++... +.- .-.|++.++..|+|++++.
T Consensus 310 ~vi~dG---------GIr---~G~Dv~KALaLGA~~v~iG 337 (383)
T cd03332 310 TVLFDS---------GVR---TGADIMKALALGAKAVLIG 337 (383)
T ss_pred eEEEeC---------CcC---cHHHHHHHHHcCCCEEEEc
Confidence 888743 322 2468999999999999974
No 380
>PLN02826 dihydroorotate dehydrogenase
Probab=40.78 E-value=5.2e+02 Score=28.30 Aligned_cols=88 Identities=23% Similarity=0.239 Sum_probs=50.6
Q ss_pred CCceEEEEecChhhhhcHHHHHhh-----cCeeEEc-----C-Cccc-----ccC-CC---CCHHHHHHHHHHHHHhc--
Q 010211 307 ADIHVIVKIESADSIPNLHSIISA-----SDGAMVA-----R-GDLG-----AEL-PI---EDVPLLQEDIIRRCRSM-- 364 (515)
Q Consensus 307 ~~i~IIaKIEt~~aveNldeIl~~-----sDgImIg-----r-gDLg-----~el-g~---e~v~~aqk~Ii~~c~~a-- 364 (515)
.+++|++||=--..-+.+++|+.. +|||.+. | +||- .+. |+ +--+.+.+.+-+..++.
T Consensus 261 ~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~ 340 (409)
T PLN02826 261 GPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRG 340 (409)
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCC
Confidence 358999999322222345555543 7999775 3 3331 111 12 33344555444445554
Q ss_pred CCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 365 QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 365 GKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
..|+|-.+ +.-+ -.|++.++..|+++|.+-
T Consensus 341 ~ipIIgvG---------GI~s---g~Da~e~i~AGAs~VQv~ 370 (409)
T PLN02826 341 KIPLVGCG---------GVSS---GEDAYKKIRAGASLVQLY 370 (409)
T ss_pred CCcEEEEC---------CCCC---HHHHHHHHHhCCCeeeec
Confidence 35666532 3333 348999999999999986
No 381
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=40.71 E-value=68 Score=32.76 Aligned_cols=71 Identities=13% Similarity=0.156 Sum_probs=42.0
Q ss_pred hhHHHhhcchhcCCcEEEecccCCHHHH----HHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh---cCeeEEcCCc
Q 010211 268 KDWEDIKFGVDNQVDFYAVSFVKDAKVV----HELKDYLKSCNADIHVIVKIESADSIPNLHSIISA---SDGAMVARGD 340 (515)
Q Consensus 268 kD~~dI~~al~~gvD~ValSfVrsa~dv----~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~---sDgImIgrgD 340 (515)
++.++++.+++.|++.|++.. |+-... ....++.....++..+|+ |+ |+.+.+++... +||++||-.-
T Consensus 159 h~~~El~~a~~~ga~iiGINn-RdL~t~~vd~~~~~~L~~~ip~~~~~Is--ES--GI~t~~d~~~l~~~~davLvG~~l 233 (247)
T PRK13957 159 HTEDEAKLALDCGAEIIGINT-RDLDTFQIHQNLVEEVAAFLPPNIVKVG--ES--GIESRSDLDKFRKLVDAALIGTYF 233 (247)
T ss_pred CCHHHHHHHHhCCCCEEEEeC-CCCccceECHHHHHHHHhhCCCCcEEEE--cC--CCCCHHHHHHHHHhCCEEEECHHH
Confidence 456778888889999998853 333322 222233333334555554 33 66666666443 8999999655
Q ss_pred ccc
Q 010211 341 LGA 343 (515)
Q Consensus 341 Lg~ 343 (515)
+..
T Consensus 234 m~~ 236 (247)
T PRK13957 234 MEK 236 (247)
T ss_pred hCC
Confidence 443
No 382
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=40.56 E-value=1.9e+02 Score=25.57 Aligned_cols=75 Identities=20% Similarity=0.282 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHh--hcCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEe
Q 010211 295 VHELKDYLKSCNADIHVIVKIESADSIPNLHSIIS--ASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVAT 372 (515)
Q Consensus 295 v~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~--~sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivAT 372 (515)
+..+++++++.|-+..+ +-. ++.++++.+. -.|.|++| +.+...++++-+.|...|+||.+
T Consensus 18 a~k~k~~~~e~gi~~~i----~a~-~~~e~~~~~~~~~~DvIll~----------PQi~~~~~~i~~~~~~~~ipv~~-- 80 (104)
T PRK09590 18 AKKTTEYLKEQGKDIEV----DAI-TATEGEKAIAAAEYDLYLVS----------PQTKMYFKQFEEAGAKVGKPVVQ-- 80 (104)
T ss_pred HHHHHHHHHHCCCceEE----EEe-cHHHHHHhhccCCCCEEEEC----------hHHHHHHHHHHHHhhhcCCCEEE--
Confidence 46678888887766433 322 4445666554 37999987 68999999999999999999987
Q ss_pred ccccccccCCCcChHH
Q 010211 373 NMLESMIDHPTPTRAE 388 (515)
Q Consensus 373 qmLeSMi~~~~PtrAE 388 (515)
++.+.+.|.|-.+|
T Consensus 81 --I~~~~Y~~~~~~~~ 94 (104)
T PRK09590 81 --IPPQAYIPIPMGIE 94 (104)
T ss_pred --eCHHHcCCCccCHH
Confidence 45566676666655
No 383
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=40.42 E-value=76 Score=31.56 Aligned_cols=59 Identities=19% Similarity=0.301 Sum_probs=41.0
Q ss_pred hhcchhcCCcEEEecccCCHHH--------HHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh----cCeeEEc
Q 010211 273 IKFGVDNQVDFYAVSFVKDAKV--------VHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVA 337 (515)
Q Consensus 273 I~~al~~gvD~ValSfVrsa~d--------v~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~----sDgImIg 337 (515)
...|.+.|++||+ |||.+-+| ++++.++++..+.+++|++ .++.|.+++++. +|.+-+.
T Consensus 115 a~~Aa~aGa~yis-pyvgRi~d~g~dg~~~v~~~~~~~~~~~~~tkIla-----AS~r~~~~v~~~~~~G~d~vTip 185 (213)
T TIGR00875 115 ALLAAKAGATYVS-PFVGRLDDIGGDGMKLIEEVKTIFENHAPDTEVIA-----ASVRHPRHVLEAALIGADIATMP 185 (213)
T ss_pred HHHHHHcCCCEEE-eecchHHHcCCCHHHHHHHHHHHHHHcCCCCEEEE-----eccCCHHHHHHHHHcCCCEEEcC
Confidence 3445567999886 89988877 4456677777777777765 366777777753 6776664
No 384
>PLN02417 dihydrodipicolinate synthase
Probab=40.32 E-value=2.3e+02 Score=28.91 Aligned_cols=95 Identities=14% Similarity=0.078 Sum_probs=52.6
Q ss_pred HHHHhh-cCeeEEc-CCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHH-HhHHHHHHHhCCc
Q 010211 325 HSIISA-SDGAMVA-RGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE-VSDIAIAVREGAD 401 (515)
Q Consensus 325 deIl~~-sDgImIg-rgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAE-v~DvanaV~~G~D 401 (515)
+..++. +|||++. -.-=+..|..++-..+.+.+++.+ ....|++.. ....+-.| +...-.+-..|+|
T Consensus 29 ~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~-~~~~pvi~g---------v~~~~t~~~i~~a~~a~~~Gad 98 (280)
T PLN02417 29 NMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCF-GGKIKVIGN---------TGSNSTREAIHATEQGFAVGMH 98 (280)
T ss_pred HHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHh-CCCCcEEEE---------CCCccHHHHHHHHHHHHHcCCC
Confidence 334444 8999984 111222223234333444444432 233677763 23333334 6666677889999
Q ss_pred EEeecccccCCCCHHHHHHHHHHHHHHH
Q 010211 402 AVMLSGETAHGKFPLKAVKVMHTVALRT 429 (515)
Q Consensus 402 ~vmLs~ETa~G~yPveaV~~m~~I~~~a 429 (515)
++|+..=.-...-+-+.++....|+...
T Consensus 99 av~~~~P~y~~~~~~~i~~~f~~va~~~ 126 (280)
T PLN02417 99 AALHINPYYGKTSQEGLIKHFETVLDMG 126 (280)
T ss_pred EEEEcCCccCCCCHHHHHHHHHHHHhhC
Confidence 9999754322222467788888888755
No 385
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=40.11 E-value=4.2e+02 Score=26.94 Aligned_cols=88 Identities=23% Similarity=0.336 Sum_probs=52.2
Q ss_pred CCceEEEEe--cChhhhhcHHHHHhh--cCeeEEcCC-----cccccCCCCCHHHHHHHHHHHHHhc-CCcEEEEecccc
Q 010211 307 ADIHVIVKI--ESADSIPNLHSIISA--SDGAMVARG-----DLGAELPIEDVPLLQEDIIRRCRSM-QKPVIVATNMLE 376 (515)
Q Consensus 307 ~~i~IIaKI--Et~~aveNldeIl~~--sDgImIgrg-----DLg~elg~e~v~~aqk~Ii~~c~~a-GKPvivATqmLe 376 (515)
.+..++++| .+.+...+.-+.++. +|+|=+-=+ ..+.+++ .-+....+++++++++ ++|+++
T Consensus 88 ~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~--~~~~~~~eiv~~vr~~~~~Pv~v------ 159 (296)
T cd04740 88 FGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG--TDPEAVAEIVKAVKKATDVPVIV------ 159 (296)
T ss_pred CCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc--CCHHHHHHHHHHHHhccCCCEEE------
Confidence 356788887 455555444444433 688866210 0022222 2245667788888877 899987
Q ss_pred ccccCCCcChHHHhHHHH-HHHhCCcEEeec
Q 010211 377 SMIDHPTPTRAEVSDIAI-AVREGADAVMLS 406 (515)
Q Consensus 377 SMi~~~~PtrAEv~Dvan-aV~~G~D~vmLs 406 (515)
+ -.|+..+..+++. +...|+|++.+.
T Consensus 160 ---K-l~~~~~~~~~~a~~~~~~G~d~i~~~ 186 (296)
T cd04740 160 ---K-LTPNVTDIVEIARAAEEAGADGLTLI 186 (296)
T ss_pred ---E-eCCCchhHHHHHHHHHHcCCCEEEEE
Confidence 2 2344446666665 556799998775
No 386
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=40.00 E-value=4e+02 Score=28.58 Aligned_cols=137 Identities=20% Similarity=0.222 Sum_probs=70.0
Q ss_pred HHHhhcchhcCCcEEEecccCCH---------------HHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh----
Q 010211 270 WEDIKFGVDNQVDFYAVSFVKDA---------------KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA---- 330 (515)
Q Consensus 270 ~~dI~~al~~gvD~ValSfVrsa---------------~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~---- 330 (515)
.+|++.+.+.|+|.|.+++--|. +.+.+.-++..+.|..+.+-+.-.+..-.+-+.++++.
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~ 157 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEA 157 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhC
Confidence 45677778889999887654433 22222334555556554443333333334444444443
Q ss_pred -cCeeEEcCCc-ccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEee---
Q 010211 331 -SDGAMVARGD-LGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML--- 405 (515)
Q Consensus 331 -sDgImIgrgD-Lg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmL--- 405 (515)
+|.|.++ | .|.-.| .++....+.+.+ ..+.|+.+.+ +| +.-.|-. -.-.|+..|++.+=-
T Consensus 158 Ga~~I~l~--DT~G~~~P-~~v~~lv~~l~~---~~~~~l~~H~-------Hn-d~GlA~A-N~laAv~aGa~~vd~tv~ 222 (378)
T PRK11858 158 GADRVRFC--DTVGILDP-FTMYELVKELVE---AVDIPIEVHC-------HN-DFGMATA-NALAGIEAGAKQVHTTVN 222 (378)
T ss_pred CCCEEEEe--ccCCCCCH-HHHHHHHHHHHH---hcCCeEEEEe-------cC-CcCHHHH-HHHHHHHcCCCEEEEeec
Confidence 4555554 3 222111 344444444433 3378888875 33 3333322 233567788876532
Q ss_pred -cccccCCCCHHHHHHHH
Q 010211 406 -SGETAHGKFPLKAVKVM 422 (515)
Q Consensus 406 -s~ETa~G~yPveaV~~m 422 (515)
-|| ..|+=|+|.|-+.
T Consensus 223 GlGe-raGNa~lE~vv~~ 239 (378)
T PRK11858 223 GLGE-RAGNAALEEVVMA 239 (378)
T ss_pred cccc-cccCccHHHHHHH
Confidence 134 2477787765443
No 387
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=39.84 E-value=50 Score=36.33 Aligned_cols=46 Identities=26% Similarity=0.413 Sum_probs=42.1
Q ss_pred EecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHH
Q 010211 105 CTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEY 150 (515)
Q Consensus 105 ~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~ 150 (515)
+.||-..++.+.+.-|.++|+|+.=|.-|.|+-.+..++|+.||+.
T Consensus 244 AaiGTre~dK~rl~ll~~aGvdvviLDSSqGnS~~qiemik~iK~~ 289 (503)
T KOG2550|consen 244 AAIGTRDDDKERLDLLVQAGVDVVILDSSQGNSIYQLEMIKYIKET 289 (503)
T ss_pred eccccccchhHHHHHhhhcCCcEEEEecCCCcchhHHHHHHHHHhh
Confidence 5678888899999999999999999999999999999999999974
No 388
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=39.61 E-value=1.5e+02 Score=25.63 Aligned_cols=61 Identities=15% Similarity=0.237 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEE
Q 010211 295 VHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIV 370 (515)
Q Consensus 295 v~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPviv 370 (515)
+..+++++++.|-+..+ +.. ++.++++.+...|.|+++ +.+...++++-+.+...|+||.+
T Consensus 20 ~~k~~~~~~~~gi~~~v----~a~-~~~~~~~~~~~~Dvill~----------pqi~~~~~~i~~~~~~~~ipv~~ 80 (95)
T TIGR00853 20 VNKMNKAAEEYGVPVKI----AAG-SYGAAGEKLDDADVVLLA----------PQVAYMLPDLKKETDKKGIPVEV 80 (95)
T ss_pred HHHHHHHHHHCCCcEEE----EEe-cHHHHHhhcCCCCEEEEC----------chHHHHHHHHHHHhhhcCCCEEE
Confidence 46788888887766433 322 455566666668999987 68999999999999999999987
No 389
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=39.61 E-value=3.7e+02 Score=28.43 Aligned_cols=51 Identities=27% Similarity=0.367 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhc--------CCcEEEEeccccccccCCCcChHHHhHHHH-HHHhCCcEEeecccc
Q 010211 351 PLLQEDIIRRCRSM--------QKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAVMLSGET 409 (515)
Q Consensus 351 ~~aqk~Ii~~c~~a--------GKPvivATqmLeSMi~~~~PtrAEv~Dvan-aV~~G~D~vmLs~ET 409 (515)
++...++++++++. .+|+++ ...|..+..++.+++. +...|+|++.+.+-+
T Consensus 188 ~~~~~~i~~~V~~~~~~~~~~~~~Pv~v--------KLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~ 247 (335)
T TIGR01036 188 KAELRDLLTAVKQEQDGLRRVHRVPVLV--------KIAPDLTESDLEDIADSLVELGIDGVIATNTT 247 (335)
T ss_pred HHHHHHHHHHHHHHHHhhhhccCCceEE--------EeCCCCCHHHHHHHHHHHHHhCCcEEEEECCC
Confidence 45555666665533 289988 2456666556777766 667899999998644
No 390
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.48 E-value=87 Score=32.46 Aligned_cols=63 Identities=10% Similarity=0.101 Sum_probs=45.4
Q ss_pred hhHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEE--ecChhhhhcHHHHHhh-cCeeEEcC
Q 010211 268 KDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVK--IESADSIPNLHSIISA-SDGAMVAR 338 (515)
Q Consensus 268 kD~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaK--IEt~~aveNldeIl~~-sDgImIgr 338 (515)
++.+++..+++.|+|+|.+.. -+.+++.++.+.+. .++++.|- | -.+|+.+.++. +|+|-+|.
T Consensus 197 ~tleea~eA~~~gaD~I~LD~-~~~e~l~~~v~~~~---~~i~leAsGGI----t~~ni~~~a~tGvD~Isvg~ 262 (277)
T PRK05742 197 ESLDELRQALAAGADIVMLDE-LSLDDMREAVRLTA---GRAKLEASGGI----NESTLRVIAETGVDYISIGA 262 (277)
T ss_pred CCHHHHHHHHHcCCCEEEECC-CCHHHHHHHHHHhC---CCCcEEEECCC----CHHHHHHHHHcCCCEEEECh
Confidence 456777788899999999975 47778777766552 34444432 2 25788888888 99999974
No 391
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=39.24 E-value=3.1e+02 Score=30.44 Aligned_cols=129 Identities=13% Similarity=0.031 Sum_probs=70.1
Q ss_pred cchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh----cCeeEEcCCcccccCCC--C
Q 010211 275 FGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLGAELPI--E 348 (515)
Q Consensus 275 ~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~----sDgImIgrgDLg~elg~--e 348 (515)
.+.+.|+|+|-++. ..-.....|+.+ +.+..|=+- ..+++|+... +|.|.+||-.=+..=+. +
T Consensus 362 lA~~~~adGvHl~~--~d~~~~~~r~~~---~~~~~iG~S------~h~~~e~~~a~~~gadyi~~gpif~t~tk~~~~~ 430 (502)
T PLN02898 362 VALACDADGVHLGQ--SDMPVRLARSLL---GPGKIIGVS------CKTPEQAEQAWKDGADYIGCGGVFPTNTKANNKT 430 (502)
T ss_pred HHHhcCCCEEEeCh--HhcCHHHHHHhc---CCCCEEEEe------CCCHHHHHHHhhcCCCEEEECCeecCCCCCCCCC
Confidence 33455777776652 111123344433 333333232 3455665554 79999987533222110 1
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCc---EEeecccccCCCCHHHHHHHHHHH
Q 010211 349 DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGAD---AVMLSGETAHGKFPLKAVKVMHTV 425 (515)
Q Consensus 349 ~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D---~vmLs~ETa~G~yPveaV~~m~~I 425 (515)
.=.+..+++ +.....||+.. .+ -+... +..+...|+| ++.+.+.-..=..|.++++.+.++
T Consensus 431 ~g~~~~~~~---~~~~~~Pv~ai---------GG-I~~~~---~~~~~~~G~~~~~gvav~~~i~~~~d~~~~~~~~~~~ 494 (502)
T PLN02898 431 IGLDGLREV---CEASKLPVVAI---------GG-ISASN---AASVMESGAPNLKGVAVVSALFDQEDVLKATRKLHAI 494 (502)
T ss_pred CCHHHHHHH---HHcCCCCEEEE---------CC-CCHHH---HHHHHHcCCCcCceEEEEeHHhcCCCHHHHHHHHHHH
Confidence 111222333 45568898763 22 22222 3355666777 999887765557799999999988
Q ss_pred HHHHh
Q 010211 426 ALRTE 430 (515)
Q Consensus 426 ~~~aE 430 (515)
..+..
T Consensus 495 ~~~~~ 499 (502)
T PLN02898 495 LTEAL 499 (502)
T ss_pred HHHHh
Confidence 77654
No 392
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=39.17 E-value=2.9e+02 Score=25.30 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEee
Q 010211 353 LQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 405 (515)
Q Consensus 353 aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmL 405 (515)
+..++++.++++|+++++-| .+ + ..+.-.++..|+|+++-
T Consensus 148 ~~~~~i~~~~~~g~~v~~wt-------vn---~---~~~~~~~~~~GVdgI~T 187 (189)
T cd08556 148 LTPELVRAAHAAGLKVYVWT-------VN---D---PEDARRLLALGVDGIIT 187 (189)
T ss_pred CCHHHHHHHHHcCCEEEEEc-------CC---C---HHHHHHHHHCCCCEEec
Confidence 56899999999999999876 11 1 23445778889999874
No 393
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=39.13 E-value=1.2e+02 Score=30.19 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=30.9
Q ss_pred HhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHHHHHH
Q 010211 389 VSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVAL 427 (515)
Q Consensus 389 v~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~ 427 (515)
+.....++..|+|.++.-.--...+-|.++++.+.+.+.
T Consensus 190 ~~~~~~ai~~Gad~iVvGR~I~~a~dP~~~a~~i~~~i~ 228 (230)
T PRK00230 190 VMTPAQAIAAGSDYIVVGRPITQAADPAAAYEAILAEIA 228 (230)
T ss_pred HhCHHHHHHcCCCEEEECCcccCCCCHHHHHHHHHHHhh
Confidence 445778899999999987666677779999988876543
No 394
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=39.07 E-value=60 Score=33.81 Aligned_cols=67 Identities=24% Similarity=0.301 Sum_probs=37.0
Q ss_pred HHHhhcchhcCCcEEEecccCC-------HHHHHHHHHHHHhcCCCceEEEE--ecChhhhhcHHHHHhh--cCeeEEcC
Q 010211 270 WEDIKFGVDNQVDFYAVSFVKD-------AKVVHELKDYLKSCNADIHVIVK--IESADSIPNLHSIISA--SDGAMVAR 338 (515)
Q Consensus 270 ~~dI~~al~~gvD~ValSfVrs-------a~dv~~vr~~l~~~~~~i~IIaK--IEt~~aveNldeIl~~--sDgImIgr 338 (515)
.+-++...+.|+++|.+= -|+ ..|+..++...+..+ +.||+- |.|. +.+.++++. +||+||||
T Consensus 141 ~~~~~~l~~~G~~~i~vH-~Rt~~q~~~~~a~w~~i~~i~~~~~--ipvi~NGdI~s~---~d~~~~~~~tg~dgvMigR 214 (309)
T PF01207_consen 141 IEFARILEDAGVSAITVH-GRTRKQRYKGPADWEAIAEIKEALP--IPVIANGDIFSP---EDAERMLEQTGADGVMIGR 214 (309)
T ss_dssp HHHHHHHHHTT--EEEEE-CS-TTCCCTS---HHHHHHCHHC-T--SEEEEESS--SH---HHHHHHCCCH-SSEEEESH
T ss_pred HHHHHHhhhcccceEEEe-cCchhhcCCcccchHHHHHHhhccc--ceeEEcCccCCH---HHHHHHHHhcCCcEEEEch
Confidence 455566678899999873 333 455666665554433 788873 4443 333444444 89999999
Q ss_pred Cccc
Q 010211 339 GDLG 342 (515)
Q Consensus 339 gDLg 342 (515)
|=|+
T Consensus 215 gal~ 218 (309)
T PF01207_consen 215 GALG 218 (309)
T ss_dssp HHCC
T ss_pred hhhh
Confidence 9663
No 395
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=38.90 E-value=71 Score=33.59 Aligned_cols=67 Identities=15% Similarity=0.241 Sum_probs=39.7
Q ss_pred HHhhcchhcCCcEEEecccCCH---------------HHHHHHHHHHHhcCCCceEEE--EecChhhhhcHHHHHhhcCe
Q 010211 271 EDIKFGVDNQVDFYAVSFVKDA---------------KVVHELKDYLKSCNADIHVIV--KIESADSIPNLHSIISASDG 333 (515)
Q Consensus 271 ~dI~~al~~gvD~ValSfVrsa---------------~dv~~vr~~l~~~~~~i~IIa--KIEt~~aveNldeIl~~sDg 333 (515)
+.++...+.|+|.|.+. .|++ .++..+++.-+. -.++.||+ -|.|.+ ...+.+.-+||
T Consensus 145 ~~~~~l~~~G~~~itvH-gRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~-~~~ipVi~NGdI~s~~---da~~~l~g~dg 219 (318)
T TIGR00742 145 DFVEIVSGKGCQNFIVH-ARKAWLSGLSPKENREIPPLRYERVYQLKKD-FPHLTIEINGGIKNSE---QIKQHLSHVDG 219 (318)
T ss_pred HHHHHHHHcCCCEEEEe-CCchhhcCCCccccccCCchhHHHHHHHHHh-CCCCcEEEECCcCCHH---HHHHHHhCCCE
Confidence 33455567899998764 5654 144444443322 23577776 344433 33344445999
Q ss_pred eEEcCCccc
Q 010211 334 AMVARGDLG 342 (515)
Q Consensus 334 ImIgrgDLg 342 (515)
+|||||=|+
T Consensus 220 VMigRgal~ 228 (318)
T TIGR00742 220 VMVGREAYE 228 (318)
T ss_pred EEECHHHHh
Confidence 999999875
No 396
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=38.73 E-value=69 Score=35.30 Aligned_cols=91 Identities=18% Similarity=0.262 Sum_probs=64.1
Q ss_pred EcCCcccccCCC-CCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeeccc-ccCCC
Q 010211 336 VARGDLGAELPI-EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGE-TAHGK 413 (515)
Q Consensus 336 IgrgDLg~elg~-e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~E-Ta~G~ 413 (515)
+|.|+.-+.=|+ +-|+...-++++.|=..+|--|+|- --=++..-+.+ .-+.|-+..|+||- ++||.+ ...|.
T Consensus 274 LA~GEpP~~kGYppSVF~~LP~LlERaG~~~~GsITaf--YTVLveGDD~~-dPiaD~~RsILDGH--IvLsR~LA~~gh 348 (441)
T COG1157 274 LAAGEPPATKGYPPSVFSELPRLLERAGNGDKGSITAF--YTVLVEGDDMN-DPIADEVRSILDGH--IVLSRALAEAGH 348 (441)
T ss_pred HhcCCCCccCCCCchHHHHhHHHHhhcCCCCCCcEEEE--EEEEeecCCCC-Cchhhhhhhhccce--EEeeHhHHhcCC
Confidence 455666555555 5788888888888877777766541 11222222332 22888899999995 999999 55999
Q ss_pred CHHHHHHHHHHHHHHHhcCC
Q 010211 414 FPLKAVKVMHTVALRTESSL 433 (515)
Q Consensus 414 yPveaV~~m~~I~~~aE~~~ 433 (515)
|| |+..+++|.+-+.+..
T Consensus 349 yP--aIdvl~SiSRvm~~i~ 366 (441)
T COG1157 349 YP--AIDVLASISRVMPQIV 366 (441)
T ss_pred CC--CcchHHHHHHHhhhcC
Confidence 99 8888999988887654
No 397
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=38.64 E-value=32 Score=32.27 Aligned_cols=29 Identities=34% Similarity=0.574 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcCCcEEEEeccccccccCCCcChHH
Q 010211 354 QEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE 388 (515)
Q Consensus 354 qk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAE 388 (515)
..++|+...+.|+||++||. .+|.|.-.|
T Consensus 65 ~~evi~~I~~~G~PviVAtD------V~p~P~~V~ 93 (138)
T PF04312_consen 65 RSEVIEWISEYGKPVIVATD------VSPPPETVK 93 (138)
T ss_pred HHHHHHHHHHcCCEEEEEec------CCCCcHHHH
Confidence 46788888999999999995 566666544
No 398
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=38.39 E-value=3.8e+02 Score=27.62 Aligned_cols=48 Identities=38% Similarity=0.493 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHh-cCCcEEEEeccccccccCCCcChHHHhHHHH-HHHhCCcEEeecc
Q 010211 350 VPLLQEDIIRRCRS-MQKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAVMLSG 407 (515)
Q Consensus 350 v~~aqk~Ii~~c~~-aGKPvivATqmLeSMi~~~~PtrAEv~Dvan-aV~~G~D~vmLs~ 407 (515)
-++...+|+++.++ .++|+.+ + -.|...++.+++. +...|+|++.+++
T Consensus 152 ~~~~~~~iv~~v~~~~~~Pv~v---------K-l~~~~~~~~~~a~~~~~~Gadgi~~~N 201 (299)
T cd02940 152 DPELVEEICRWVREAVKIPVIA---------K-LTPNITDIREIARAAKEGGADGVSAIN 201 (299)
T ss_pred CHHHHHHHHHHHHHhcCCCeEE---------E-CCCCchhHHHHHHHHHHcCCCEEEEec
Confidence 35666777777765 4689987 3 2354445555555 5567999998753
No 399
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=38.31 E-value=4.5e+02 Score=27.35 Aligned_cols=164 Identities=13% Similarity=0.122 Sum_probs=90.3
Q ss_pred HHHHHHhcCCCceEEE---EecC---hhhhhcHHHHHhh-----cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCC
Q 010211 298 LKDYLKSCNADIHVIV---KIES---ADSIPNLHSIISA-----SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQK 366 (515)
Q Consensus 298 vr~~l~~~~~~i~IIa---KIEt---~~aveNldeIl~~-----sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGK 366 (515)
+..++.....++.+++ .+|. .++++|++.+++. +|+++.-+|=+..-- + --.+.+
T Consensus 13 l~rif~~~tG~~~i~a~DhGv~~g~p~~gl~d~e~~v~~v~~~g~dav~~~~G~~~~~~--~------------~y~~dv 78 (265)
T COG1830 13 LARIFNRGTGRLLILAMDHGVEHGNPIEGLEDPENIVAKVAEAGADAVAMTPGIARSVH--R------------GYAHDV 78 (265)
T ss_pred HHHHhcCCCCCEEEEecccccccCCCcccccCHHHHHHHHHhcCCCEEEecHhHHhhcC--c------------cccCCc
Confidence 3444443344566666 4555 3578888887775 577777665332211 1 112357
Q ss_pred cEEEEecccccccc-CCCcChHH--HhHHHHHHHhCCcEEeecccccCC-CCHHHHHHHHHHHHHHHhcCC-C-----CC
Q 010211 367 PVIVATNMLESMID-HPTPTRAE--VSDIAIAVREGADAVMLSGETAHG-KFPLKAVKVMHTVALRTESSL-P-----VS 436 (515)
Q Consensus 367 PvivATqmLeSMi~-~~~PtrAE--v~DvanaV~~G~D~vmLs~ETa~G-~yPveaV~~m~~I~~~aE~~~-~-----~~ 436 (515)
|.++ .|.++.. .+.+ .-+ +..+=.++..|+|++-.+ --+| .+=-|.++.+.++..++.++- + |.
T Consensus 79 pliv---kl~~~t~l~~~~-~~~~~~~~ve~ai~lgadAV~~~--Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~Yp 152 (265)
T COG1830 79 PLIV---KLNGSTSLSPDP-NDQVLVATVEDAIRLGADAVGAT--VYVGSETEREMIENISQVVEDAHELGMPLVAWAYP 152 (265)
T ss_pred CEEE---EeccccccCCCc-ccceeeeeHHHHHhCCCcEEEEE--EecCCcchHHHHHHHHHHHHHHHHcCCceEEEEec
Confidence 8777 4555533 2222 332 566678889999997642 1122 222688888888888888751 1 11
Q ss_pred CC------CCCHHHHHHHHhHH-----hh----ccCCChHHHHHHHhcCCCCeEE-EEeCCH
Q 010211 437 IT------PPTQFSAHKNRIHG-----SN----FKSLSAFINNLCLHKSLWHEIF-VSLAER 482 (515)
Q Consensus 437 ~~------~~~~~~~ia~~a~a-----~~----v~t~sG~tA~~iS~~RP~~pIi-avT~~~ 482 (515)
.- +....+.++.++-+ +. -+|.+-.+=+.+-++-| +||+ |.-+..
T Consensus 153 Rg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~~e~F~~vv~~~~-vpVviaGG~k~ 213 (265)
T COG1830 153 RGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTGDPESFRRVVAACG-VPVVIAGGPKT 213 (265)
T ss_pred cCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCCChHHHHHHHHhCC-CCEEEeCCCCC
Confidence 11 12233445544331 21 24444477788888888 8865 444433
No 400
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=37.79 E-value=91 Score=31.40 Aligned_cols=82 Identities=17% Similarity=0.315 Sum_probs=48.4
Q ss_pred hhhhcHHHHHhh-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHH
Q 010211 319 DSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVR 397 (515)
Q Consensus 319 ~aveNldeIl~~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~ 397 (515)
...+.++.+.+. .|+|||| |=+++. .+...+++++.++..+|+++ + |... +.+.
T Consensus 15 ~~~~~~~~~~~~gtdai~vG-GS~~vt------~~~~~~~v~~ik~~~lPvil---------f---p~~~------~~i~ 69 (223)
T TIGR01768 15 EADEIAKAAAESGTDAILIG-GSQGVT------YEKTDTLIEALRRYGLPIIL---------F---PSNP------TNVS 69 (223)
T ss_pred ccHHHHHHHHhcCCCEEEEc-CCCccc------HHHHHHHHHHHhccCCCEEE---------e---CCCc------cccC
Confidence 455667777776 8999999 333222 12445566777788899998 2 3221 3456
Q ss_pred hCCcEEeec----cccc---CCCCHHHHHHHHHHHH
Q 010211 398 EGADAVMLS----GETA---HGKFPLKAVKVMHTVA 426 (515)
Q Consensus 398 ~G~D~vmLs----~ETa---~G~yPveaV~~m~~I~ 426 (515)
.++|++++- +... +|.+ +++++.+.+..
T Consensus 70 ~~aDa~l~~svlNs~~~~~iig~~-~~~~~~~~~~~ 104 (223)
T TIGR01768 70 RDADALFFPSVLNSDDPYWIIGAQ-IEAAPKFKKIG 104 (223)
T ss_pred cCCCEEEEEEeecCCCchHHHhHH-HHHHHHHhhhc
Confidence 789998743 2221 3332 45665555443
No 401
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=37.78 E-value=3.3e+02 Score=28.38 Aligned_cols=124 Identities=16% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcE-EEEe
Q 010211 295 VHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPV-IVAT 372 (515)
Q Consensus 295 v~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPv-ivAT 372 (515)
...++.+.++. .++|........-++.+..-+.. .+.||+. +-.+++++=...-+++++.|++.|..| .=-.
T Consensus 63 ~~~~~~~a~~~--~VPValHLDH~~~~e~i~~ai~~GftSVMiD----gS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG 136 (284)
T PRK12737 63 VAIAEVAARKY--NIPLALHLDHHEDLDDIKKKVRAGIRSVMID----GSHLSFEENIAIVKEVVEFCHRYDASVEAELG 136 (284)
T ss_pred HHHHHHHHHHC--CCCEEEECCCCCCHHHHHHHHHcCCCeEEec----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Q ss_pred cc---------ccccccCCCcChHHHhHHHHHHH-hCCcEEeecccccCCCC---HHHHHHHHHHHHHHH
Q 010211 373 NM---------LESMIDHPTPTRAEVSDIAIAVR-EGADAVMLSGETAHGKF---PLKAVKVMHTVALRT 429 (515)
Q Consensus 373 qm---------LeSMi~~~~PtrAEv~DvanaV~-~G~D~vmLs~ETa~G~y---PveaV~~m~~I~~~a 429 (515)
++ -+.-..-.+|..|+ .|+. -|+|++-.+--|+.|.| |---...+.+|....
T Consensus 137 ~igg~e~~~~~~~~~~~~T~peeA~-----~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~ 201 (284)
T PRK12737 137 RLGGQEDDLVVDEKDAMYTNPDAAA-----EFVERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKV 201 (284)
T ss_pred eccCccCCcccccccccCCCHHHHH-----HHHHHhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHh
No 402
>PRK01712 carbon storage regulator; Provisional
Probab=37.31 E-value=83 Score=25.82 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=23.8
Q ss_pred ccCcCCEEEEeCCeeEEEEEEEeCCeEEE
Q 010211 211 DVEVGDILLVDGGMMSLAVKSKTKDLVKC 239 (515)
Q Consensus 211 ~v~~Gd~IliDDG~I~l~V~~~~~~~v~~ 239 (515)
.-++|+.|+|+| .|..+|.++.++.|+.
T Consensus 5 tRk~gE~I~Igd-~I~I~V~~i~~~~Vrl 32 (64)
T PRK01712 5 TRKVGESLMIGD-DIEVTVLGVKGNQVRI 32 (64)
T ss_pred EccCCCEEEeCC-CEEEEEEEEeCCEEEE
Confidence 348899999998 6999999999888754
No 403
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=37.25 E-value=2.7e+02 Score=28.79 Aligned_cols=90 Identities=16% Similarity=0.103 Sum_probs=46.5
Q ss_pred cCeeEEcC-CcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccc
Q 010211 331 SDGAMVAR-GDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGET 409 (515)
Q Consensus 331 sDgImIgr-gDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ET 409 (515)
+|||++.= .--...|..++-..+.+.+++.+ .-..||++.+ ..-++.-+...-.+-..|+|++|+..=-
T Consensus 42 v~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~-~~~~pvi~gv---------~~~t~~~i~~~~~a~~~Gadav~~~pP~ 111 (303)
T PRK03620 42 AAALFAAGGTGEFFSLTPDEYSQVVRAAVETT-AGRVPVIAGA---------GGGTAQAIEYAQAAERAGADGILLLPPY 111 (303)
T ss_pred CCEEEECcCCcCcccCCHHHHHHHHHHHHHHh-CCCCcEEEec---------CCCHHHHHHHHHHHHHhCCCEEEECCCC
Confidence 78988841 11111222233333444444433 2246777642 2223322444555566799999986432
Q ss_pred cCCCCHHHHHHHHHHHHHHHh
Q 010211 410 AHGKFPLKAVKVMHTVALRTE 430 (515)
Q Consensus 410 a~G~yPveaV~~m~~I~~~aE 430 (515)
-...-+-+.+.....|+..++
T Consensus 112 y~~~~~~~i~~~f~~va~~~~ 132 (303)
T PRK03620 112 LTEAPQEGLAAHVEAVCKSTD 132 (303)
T ss_pred CCCCCHHHHHHHHHHHHHhCC
Confidence 222224567777888877665
No 404
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=37.24 E-value=1.6e+02 Score=28.97 Aligned_cols=46 Identities=35% Similarity=0.447 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCC
Q 010211 353 LQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHG 412 (515)
Q Consensus 353 aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G 412 (515)
.-.++++.|+++|.|++=-. -+|| ++..+...|+|.+=+=--...|
T Consensus 89 ~~~~v~~~~~~~~i~~iPG~---------~Tpt-----Ei~~A~~~G~~~vK~FPA~~~G 134 (196)
T PF01081_consen 89 FDPEVIEYAREYGIPYIPGV---------MTPT-----EIMQALEAGADIVKLFPAGALG 134 (196)
T ss_dssp --HHHHHHHHHHTSEEEEEE---------SSHH-----HHHHHHHTT-SEEEETTTTTTT
T ss_pred CCHHHHHHHHHcCCcccCCc---------CCHH-----HHHHHHHCCCCEEEEecchhcC
Confidence 44789999999999997421 2333 4668999999998875333333
No 405
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=37.21 E-value=4.1e+02 Score=26.09 Aligned_cols=136 Identities=10% Similarity=0.030 Sum_probs=0.0
Q ss_pred HhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh----cCeeEEcCCcccccCCC
Q 010211 272 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLGAELPI 347 (515)
Q Consensus 272 dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~----sDgImIgrgDLg~elg~ 347 (515)
+.+.+.+.|+|+|-++ ++--.+..++..+ +.+..|=+ +..|++++.++ +|.+++||--=+.+=+-
T Consensus 71 ~~~lA~~~~adGVHlg--~~d~~~~~~r~~~---~~~~~iG~------S~H~~~e~~~A~~~gaDYi~lgpvf~T~tK~~ 139 (211)
T PRK03512 71 YWRLAIKHQAYGVHLG--QEDLETADLNAIR---AAGLRLGV------STHDDMEIDVALAARPSYIALGHVFPTQTKQM 139 (211)
T ss_pred HHHHHHHcCCCEEEcC--hHhCCHHHHHHhc---CCCCEEEE------eCCCHHHHHHHhhcCCCEEEECCccCCCCCCC
Q ss_pred CCHHHHHHHHHHHHHh-cCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHHHHH
Q 010211 348 EDVPLLQEDIIRRCRS-MQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVA 426 (515)
Q Consensus 348 e~v~~aqk~Ii~~c~~-aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~I~ 426 (515)
..-+.-.+.+.+.++. ..+||+. -.+. ...++......|++++-+.++-..-+-|.++++.+.++.
T Consensus 140 ~~~~~G~~~l~~~~~~~~~~PV~A---------iGGI----~~~ni~~l~~~Ga~GiAvisai~~~~d~~~~~~~l~~~~ 206 (211)
T PRK03512 140 PSAPQGLAQLARHVERLADYPTVA---------IGGI----SLERAPAVLATGVGSIAVVSAITQAADWRAATAQLLELA 206 (211)
T ss_pred CCCCCCHHHHHHHHHhcCCCCEEE---------ECCC----CHHHHHHHHHcCCCEEEEhhHhhCCCCHHHHHHHHHHHH
Q ss_pred HHHhc
Q 010211 427 LRTES 431 (515)
Q Consensus 427 ~~aE~ 431 (515)
..-+.
T Consensus 207 ~~~~~ 211 (211)
T PRK03512 207 EVGDE 211 (211)
T ss_pred hhccC
No 406
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=37.20 E-value=3.5e+02 Score=26.07 Aligned_cols=100 Identities=11% Similarity=0.146 Sum_probs=54.9
Q ss_pred hHHHh-hcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEec---Chh-hhhcHHHHHhh---cCeeEEcCCc
Q 010211 269 DWEDI-KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIE---SAD-SIPNLHSIISA---SDGAMVARGD 340 (515)
Q Consensus 269 D~~dI-~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIE---t~~-aveNldeIl~~---sDgImIgrgD 340 (515)
|.+.+ +...+.|++.+.+.- .+.+++..+.+..++.. ++....=|= ... ..+.++++-+. .....| |.
T Consensus 16 ~~~~~~~~~~~~Gv~~~v~~~-~~~~~~~~~~~~~~~~~-~i~~~~GihP~~~~~~~~~~~~~l~~~l~~~~~~~i--GE 91 (252)
T TIGR00010 16 DVEEVIERAKAAGVTAVVAVG-TDLEDFLRALELAEKYP-NVYAAVGVHPLDVDDDTKEDIKELERLAAHPKVVAI--GE 91 (252)
T ss_pred CHHHHHHHHHHcCCCEEEEec-CCHHHHHHHHHHHHHCC-CEEEEEEeCcchhhcCCHHHHHHHHHHccCCCEEEE--Ee
Confidence 34333 444577998876442 34677777777766655 554444331 111 12233444333 223344 55
Q ss_pred ccccCCCC-C----HHHHHHHHHHHHHhcCCcEEEEe
Q 010211 341 LGAELPIE-D----VPLLQEDIIRRCRSMQKPVIVAT 372 (515)
Q Consensus 341 Lg~elg~e-~----v~~aqk~Ii~~c~~aGKPvivAT 372 (515)
.|.+.... . =....+.+++.|++.|+||.+.|
T Consensus 92 iGld~~~~~~~~~~q~~~~~~~~~~a~~~~~pv~iH~ 128 (252)
T TIGR00010 92 TGLDYYKADEYKRRQEEVFRAQLQLAEELNLPVIIHA 128 (252)
T ss_pred cccCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 55554321 1 12455667778999999999965
No 407
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=37.13 E-value=84 Score=32.37 Aligned_cols=85 Identities=19% Similarity=0.234 Sum_probs=54.6
Q ss_pred HHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEec
Q 010211 295 VHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATN 373 (515)
Q Consensus 295 v~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATq 373 (515)
+..+++.+.+.|.++.|.+- +..---+|+++++.. .|.|+.+-+ . ......+.+.|+++++|++.+.
T Consensus 86 ve~~~~rl~~INP~~~V~~i-~~~i~~e~~~~ll~~~~D~VIdaiD---------~-~~~k~~L~~~c~~~~ip~I~~g- 153 (268)
T PRK15116 86 AEVMAERIRQINPECRVTVV-DDFITPDNVAEYMSAGFSYVIDAID---------S-VRPKAALIAYCRRNKIPLVTTG- 153 (268)
T ss_pred HHHHHHHHHhHCCCcEEEEE-ecccChhhHHHHhcCCCCEEEEcCC---------C-HHHHHHHHHHHHHcCCCEEEEC-
Confidence 34466777777877766543 322224577777743 677766522 2 2345678999999999999753
Q ss_pred cccccccCCCcChHHHhHHHH
Q 010211 374 MLESMIDHPTPTRAEVSDIAI 394 (515)
Q Consensus 374 mLeSMi~~~~PtrAEv~Dvan 394 (515)
..-...+||+-++.|++.
T Consensus 154 ---Gag~k~dp~~~~~~di~~ 171 (268)
T PRK15116 154 ---GAGGQIDPTQIQVVDLAK 171 (268)
T ss_pred ---CcccCCCCCeEEEEeeec
Confidence 222456899888877643
No 408
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=37.03 E-value=52 Score=29.03 Aligned_cols=43 Identities=26% Similarity=0.400 Sum_probs=31.7
Q ss_pred ccccccccCcCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEec
Q 010211 205 YDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELK 248 (515)
Q Consensus 205 ~~~l~~~v~~Gd~IliDDG~I~l~V~~~~~~~v~~~V~~gG~L~ 248 (515)
+.++.+.+++||+|..-.| |.-+|.+++++.++.++-.|..++
T Consensus 37 ~~~ml~sL~kGD~VvT~gG-i~G~V~~v~d~~v~I~l~~~~~i~ 79 (97)
T COG1862 37 HQELLNSLKKGDEVVTIGG-IVGTVTKVGDDTVEIELGDGTKIK 79 (97)
T ss_pred HHHHHHhccCCCEEEEcCC-eEEEEEEEecCcEEEEECCCeEEE
Confidence 3567889999999999887 456788888887655554444444
No 409
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=37.02 E-value=42 Score=34.43 Aligned_cols=62 Identities=13% Similarity=0.181 Sum_probs=43.3
Q ss_pred hhHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhh--hhcHHHHHhh-cCeeEEc
Q 010211 268 KDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADS--IPNLHSIISA-SDGAMVA 337 (515)
Q Consensus 268 kD~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~a--veNldeIl~~-sDgImIg 337 (515)
+..+.+..+.+.|+|+|.+..+ ++++++++.+.+. .+++++| --| .+|+.++++. +|+|-+|
T Consensus 186 ~t~eea~~A~~~gaDyI~ld~~-~~e~lk~~v~~~~---~~ipi~A----sGGI~~~ni~~~a~~Gvd~Isvg 250 (265)
T TIGR00078 186 ESLEEAEEAAEAGADIIMLDNM-KPEEIKEAVQLLK---GRVLLEA----SGGITLDNLEEYAETGVDVISSG 250 (265)
T ss_pred CCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhc---CCCcEEE----ECCCCHHHHHHHHHcCCCEEEeC
Confidence 4556777788999999999875 5677777666552 2333333 333 4688888888 9999984
No 410
>PF01079 Hint: Hint module; InterPro: IPR001767 This domain identifies a group of cysteine peptidases correspond to MEROPS peptidase family C46 (clan CH). The type example is the Hedgehog protein from Drosophila melanogaster (Fruit fly). These are involved in intracellular signalling required for a variety of patterning events during development. The hedgehog family of proteins self process by a cysteine-dependent mechanism, which is a one-time autolytic cleavage. It is differentiated from a typical peptidase reaction by the fact that the newly-formed carboxyl group is esterified with cholesterol, rather than being left free. The three-dimensional structure of the autolytic domain of the hedgehog protein of D. melanogaster shows that it is formed from two divergent copies of a module that also occurs in inteins, called a Hint domain [,].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3K7H_B 3K7I_B 3K7G_B 1AT0_A 3MXW_A 3M1N_B 3HO5_H 2WFR_A 2WFQ_A 2WG3_B ....
Probab=36.64 E-value=1.1e+02 Score=30.71 Aligned_cols=43 Identities=28% Similarity=0.306 Sum_probs=20.1
Q ss_pred cEEEecCCEEEEEeecC----CCCcceEEecccccccccCcCCEEEE
Q 010211 178 PIILKEGQEFNFTIKRG----VSTEDTVSVNYDDFVNDVEVGDILLV 220 (515)
Q Consensus 178 ~i~L~~G~~v~lt~~~~----~~~~~~i~v~~~~l~~~v~~Gd~Ili 220 (515)
.++.+.|++++||...- .+....-.-...-+.++|++||.|++
T Consensus 68 ~i~te~g~~l~LTp~HLI~v~~~~~~~~~~~~~vfA~~V~~Gd~v~~ 114 (217)
T PF01079_consen 68 VIETEDGRSLTLTPNHLIFVADCNGSESSNFRAVFASDVRVGDCVLV 114 (217)
T ss_dssp EEEETTS-EEEE-TT-EEEEEETTTTEE---EEEEGGG--TT-EEEE
T ss_pred EEEcCCCCeEEecCCcEEEEecCCCCcccccceeehhhCCCCCEEEE
Confidence 35667777888776520 01111110012346789999999999
No 411
>PF11213 DUF3006: Protein of unknown function (DUF3006); InterPro: IPR021377 This family of proteins has no known function.
Probab=36.08 E-value=68 Score=26.25 Aligned_cols=42 Identities=21% Similarity=0.457 Sum_probs=29.6
Q ss_pred cCCEEEEEeecCCCCcceEEecccccccccCcCCEEEE-eCCeeEE
Q 010211 183 EGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLV-DGGMMSL 227 (515)
Q Consensus 183 ~G~~v~lt~~~~~~~~~~i~v~~~~l~~~v~~Gd~Ili-DDG~I~l 227 (515)
+|+...+-.++. ...+.++...|+..++.||.+.+ ++|.+.+
T Consensus 8 E~~~AVl~~~~~---~~~~~vp~~~LP~~~keGDvl~i~~~~~~~~ 50 (71)
T PF11213_consen 8 EGDYAVLELEDG---EKEIDVPRSRLPEGAKEGDVLEIGEDGSIEI 50 (71)
T ss_pred eCCEEEEEECCC---eEEEEEEHHHCCCCCCcccEEEECCCceEEE
Confidence 356666554421 13577777789999999999999 7777654
No 412
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=36.03 E-value=2.1e+02 Score=28.14 Aligned_cols=42 Identities=19% Similarity=0.390 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEee
Q 010211 351 PLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 405 (515)
Q Consensus 351 ~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmL 405 (515)
..+...+++.++++|+++++-| .+ .| .+...++..|+|+++-
T Consensus 217 ~~~~~~~i~~~~~~G~~v~vwt-------vn-~~-----~~~~~~~~~Gvdgi~T 258 (263)
T cd08567 217 TLVTKELVDEAHALGLKVVPWT-------VN-DP-----EDMARLIDLGVDGIIT 258 (263)
T ss_pred hhcCHHHHHHHHHCCCEEEEec-------CC-CH-----HHHHHHHHcCCCEEEc
Confidence 3456789999999999999876 11 12 2445778889999874
No 413
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=35.93 E-value=59 Score=36.46 Aligned_cols=50 Identities=22% Similarity=0.330 Sum_probs=40.6
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHH
Q 010211 99 RKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKE 149 (515)
Q Consensus 99 r~TKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~ 149 (515)
.+-.+.+.+|+. +..+..+.|+++|+|+.=+.-+||..+...+.|+.+|+
T Consensus 230 grL~V~~av~~~-~~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~ 279 (502)
T PRK07107 230 KRYVVGAGINTR-DYAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIRE 279 (502)
T ss_pred cCeeeeeccChh-hHHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHH
Confidence 455677888885 56799999999999999999999987777677766665
No 414
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=35.90 E-value=5.2e+02 Score=26.79 Aligned_cols=125 Identities=15% Similarity=0.177 Sum_probs=0.0
Q ss_pred CHhhH-HHhhcchhcCCcEEEec----------------ccCCHHHHHHHHHHHHhcCCCceEEEEe-----cChhhhhc
Q 010211 266 TDKDW-EDIKFGVDNQVDFYAVS----------------FVKDAKVVHELKDYLKSCNADIHVIVKI-----ESADSIPN 323 (515)
Q Consensus 266 tekD~-~dI~~al~~gvD~ValS----------------fVrsa~dv~~vr~~l~~~~~~i~IIaKI-----Et~~aveN 323 (515)
+..+. +..+.+.+.|+|+|=+. ..++++-+.++-+.+.+.-. +.|.+|| ++..-...
T Consensus 73 ~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~-~pv~vKir~g~~~~~~~~~~ 151 (319)
T TIGR00737 73 DPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVD-IPVTVKIRIGWDDAHINAVE 151 (319)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcC-CCEEEEEEcccCCCcchHHH
Q ss_pred HHHHHhh--cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCc
Q 010211 324 LHSIISA--SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGAD 401 (515)
Q Consensus 324 ldeIl~~--sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D 401 (515)
+-..++. +|+|-|....-..-+.-+--....++|.+... +|++. ....-+..++.+.... .|+|
T Consensus 152 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~---ipvi~---------nGgI~~~~da~~~l~~--~gad 217 (319)
T TIGR00737 152 AARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVR---IPVIG---------NGDIFSPEDAKAMLET--TGCD 217 (319)
T ss_pred HHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCC---CcEEE---------eCCCCCHHHHHHHHHh--hCCC
Q ss_pred EEee
Q 010211 402 AVML 405 (515)
Q Consensus 402 ~vmL 405 (515)
+||+
T Consensus 218 ~Vmi 221 (319)
T TIGR00737 218 GVMI 221 (319)
T ss_pred EEEE
No 415
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=35.89 E-value=3.1e+02 Score=28.25 Aligned_cols=94 Identities=21% Similarity=0.150 Sum_probs=54.7
Q ss_pred HHHHHhh-cCeeEEcCCccccc---CCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHH-HhHHHHHHHh
Q 010211 324 LHSIISA-SDGAMVARGDLGAE---LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE-VSDIAIAVRE 398 (515)
Q Consensus 324 ldeIl~~-sDgImIgrgDLg~e---lg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAE-v~DvanaV~~ 398 (515)
++..++. +||++++ | .+-| |..++-..+.+.+++.+ +...||+..+ ...+-.| +...-.+-..
T Consensus 27 v~~~~~~Gv~gi~v~-G-stGE~~~Ls~~Er~~l~~~~~~~~-~g~~pvi~gv---------~~~~t~~ai~~a~~A~~~ 94 (294)
T TIGR02313 27 IEFQIEGGSHAISVG-G-TSGEPGSLTLEERKQAIENAIDQI-AGRIPFAPGT---------GALNHDETLELTKFAEEA 94 (294)
T ss_pred HHHHHHcCCCEEEEC-c-cCcccccCCHHHHHHHHHHHHHHh-CCCCcEEEEC---------CcchHHHHHHHHHHHHHc
Confidence 3444444 8999985 2 1122 22244444445555543 2346777633 3334344 5555566777
Q ss_pred CCcEEeecccccCCCCHHHHHHHHHHHHHHH
Q 010211 399 GADAVMLSGETAHGKFPLKAVKVMHTVALRT 429 (515)
Q Consensus 399 G~D~vmLs~ETa~G~yPveaV~~m~~I~~~a 429 (515)
|+|++|+..=--...-+-+.+.....|+..+
T Consensus 95 Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~ 125 (294)
T TIGR02313 95 GADAAMVIVPYYNKPNQEALYDHFAEVADAV 125 (294)
T ss_pred CCCEEEEcCccCCCCCHHHHHHHHHHHHHhc
Confidence 9999999754333333467888899999887
No 416
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=35.85 E-value=1.9e+02 Score=29.96 Aligned_cols=137 Identities=18% Similarity=0.168 Sum_probs=63.5
Q ss_pred cCCCCCCHh-hHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEe---cChhhhh-cHHHHHhh--cC
Q 010211 260 ANLPSITDK-DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKI---ESADSIP-NLHSIISA--SD 332 (515)
Q Consensus 260 ~~lp~ltek-D~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKI---Et~~ave-NldeIl~~--sD 332 (515)
+.+|-+||- |.+++..+.+. +|.+-++ .+...+..-++. +++.+ -.|..|= -|++-.. -++-|.+. -+
T Consensus 72 ~glpvvTeV~~~~~~~~vae~-vDilQIg-Arn~rn~~LL~a-~g~t~--kpV~lKrG~~~t~~e~l~aaeyi~~~Gn~~ 146 (258)
T TIGR01362 72 FGVPILTDVHESSQCEPVAEV-VDIIQIP-AFLCRQTDLLVA-AAKTG--RIVNVKKGQFLSPWDMKNVVEKVLSTGNKN 146 (258)
T ss_pred hCCceEEEeCCHHHHHHHHhh-CcEEEeC-chhcchHHHHHH-HhccC--CeEEecCCCcCCHHHHHHHHHHHHHcCCCc
Confidence 455566653 44666666665 8988887 355555433322 22222 2333331 1222222 22334433 46
Q ss_pred eeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEE-eccccccc---cCCCcChHHHhHHHH-HHHhCCcEEee
Q 010211 333 GAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA-TNMLESMI---DHPTPTRAEVSDIAI-AVREGADAVML 405 (515)
Q Consensus 333 gImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivA-TqmLeSMi---~~~~PtrAEv~Dvan-aV~~G~D~vmL 405 (515)
.++.-||= ..++-++..-..-+. ..++.+-||++- |+-+-.-- ....-.|.=+...+. ++..|+|++|+
T Consensus 147 viLcERG~---tf~y~r~~~D~~~ip-~~k~~~~PVi~DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA~GaDGl~i 220 (258)
T TIGR01362 147 ILLCERGT---SFGYNNLVVDMRSLP-IMRELGCPVIFDATHSVQQPGGLGGASGGLREFVPTLARAAVAVGIDGLFM 220 (258)
T ss_pred EEEEeCCC---CcCCCCcccchhhhH-HHHhcCCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCEEEE
Confidence 77777884 345532111111111 113348999872 21000000 000112222445554 89999999998
No 417
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=35.76 E-value=81 Score=32.50 Aligned_cols=68 Identities=22% Similarity=0.252 Sum_probs=41.4
Q ss_pred HHhhcchhcCCcEEEecccC------CHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh----cCeeEEcCCc
Q 010211 271 EDIKFGVDNQVDFYAVSFVK------DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGD 340 (515)
Q Consensus 271 ~dI~~al~~gvD~ValSfVr------sa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~----sDgImIgrgD 340 (515)
++.+.+.+.|+|+|.++--. ....+..+.+..+..+.++.||+ --|+.+-.++++. +|++++||.=
T Consensus 184 ~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia----~GGI~~~~d~~kal~lGAd~V~ig~~~ 259 (299)
T cd02809 184 EDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLL----DGGIRRGTDVLKALALGADAVLIGRPF 259 (299)
T ss_pred HHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEE----eCCCCCHHHHHHHHHcCCCEEEEcHHH
Confidence 44566678899999885311 11233334443333344677776 2466666666665 8999999965
Q ss_pred cc
Q 010211 341 LG 342 (515)
Q Consensus 341 Lg 342 (515)
|-
T Consensus 260 l~ 261 (299)
T cd02809 260 LY 261 (299)
T ss_pred HH
Confidence 53
No 418
>PRK01362 putative translaldolase; Provisional
Probab=35.68 E-value=1.5e+02 Score=29.54 Aligned_cols=61 Identities=13% Similarity=0.274 Sum_probs=41.7
Q ss_pred HhhcchhcCCcEEEecccCCHHHH--------HHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh----cCeeEEcC
Q 010211 272 DIKFGVDNQVDFYAVSFVKDAKVV--------HELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVAR 338 (515)
Q Consensus 272 dI~~al~~gvD~ValSfVrsa~dv--------~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~----sDgImIgr 338 (515)
....|.+.|++||+ +||.+.+|. .++.++++..+.+++|++ .++.|.+++++. +|.+=+.+
T Consensus 114 Qa~~Aa~aGa~yis-pyvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkila-----AS~r~~~~v~~~~~~G~d~iTi~~ 186 (214)
T PRK01362 114 QALLAAKAGATYVS-PFVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIA-----ASVRHPMHVLEAALAGADIATIPY 186 (214)
T ss_pred HHHHHHhcCCcEEE-eecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEE-----eecCCHHHHHHHHHcCCCEEecCH
Confidence 33455677999986 899988774 345667777676777765 366777777764 67666653
No 419
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=35.62 E-value=2.4e+02 Score=28.97 Aligned_cols=90 Identities=14% Similarity=0.042 Sum_probs=48.3
Q ss_pred cCeeEEc-CCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccc
Q 010211 331 SDGAMVA-RGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGET 409 (515)
Q Consensus 331 sDgImIg-rgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ET 409 (515)
+||+++. -.-=...|..++-..+.+..++.+ +-..||++.+ ...|+.-+...-.+-..|+|++|+..=-
T Consensus 40 v~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~-~g~~pvi~gv---------~~~t~~ai~~a~~a~~~Gadav~~~pP~ 109 (296)
T TIGR03249 40 LEALFAAGGTGEFFSLTPAEYEQVVEIAVSTA-KGKVPVYTGV---------GGNTSDAIEIARLAEKAGADGYLLLPPY 109 (296)
T ss_pred CCEEEECCCCcCcccCCHHHHHHHHHHHHHHh-CCCCcEEEec---------CccHHHHHHHHHHHHHhCCCEEEECCCC
Confidence 7899874 111112222234444444444432 2236777643 2224444555667777899999986422
Q ss_pred cCCCCHHHHHHHHHHHHHHHh
Q 010211 410 AHGKFPLKAVKVMHTVALRTE 430 (515)
Q Consensus 410 a~G~yPveaV~~m~~I~~~aE 430 (515)
-...-.-+.++....|+...+
T Consensus 110 y~~~s~~~i~~~f~~v~~a~~ 130 (296)
T TIGR03249 110 LINGEQEGLYAHVEAVCESTD 130 (296)
T ss_pred CCCCCHHHHHHHHHHHHhccC
Confidence 222224567788888877654
No 420
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=35.60 E-value=1.9e+02 Score=30.17 Aligned_cols=62 Identities=18% Similarity=0.280 Sum_probs=39.9
Q ss_pred CeEEEEecCCCCCCH----HHHHHHHHhCCcEEEEecCCCC-----hHHHHHHHHHHHHHHhhcCCceEEEEEec
Q 010211 100 KTKIVCTIGPSTSSR----EMIWKLAEEGMNVARLNMSHGD-----HASHQKTIDLVKEYNSQFEDKAVAIMLDT 165 (515)
Q Consensus 100 ~TKIi~TiGPss~~~----e~i~~li~aGm~v~RiN~SHg~-----~e~~~~~i~~ir~~~~~~~~~~i~I~lDL 165 (515)
+...-+|+|....++ +..+++.++|.+.+.|...|+. .+.-.+.++.+| +..| ..+.+++|.
T Consensus 126 ~v~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir---~~~g-~~~~l~vDa 196 (357)
T cd03316 126 RVRVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVR---EAVG-PDVDLMVDA 196 (357)
T ss_pred ceeeEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHH---HhhC-CCCEEEEEC
Confidence 455556776654233 3556677899999999999886 444445555555 4555 456677775
No 421
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=35.54 E-value=70 Score=32.27 Aligned_cols=53 Identities=21% Similarity=0.326 Sum_probs=40.5
Q ss_pred HHHHHHHHhCCcEEEEecCCC--------ChHHHHHHHHHHHHHHhhcCCceEEEEEecCCCee
Q 010211 115 EMIWKLAEEGMNVARLNMSHG--------DHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEV 170 (515)
Q Consensus 115 e~i~~li~aGm~v~RiN~SHg--------~~e~~~~~i~~ir~~~~~~~~~~i~I~lDL~GPkI 170 (515)
+..++|+++|.++.=+|+.-. ..++++++...|+.+.+..+ +.|.+|+.=|++
T Consensus 28 ~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~---~piSIDT~~~~v 88 (258)
T cd00423 28 EHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPD---VPISVDTFNAEV 88 (258)
T ss_pred HHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCC---CeEEEeCCcHHH
Confidence 456779999999999997555 45778888888888876554 568999877664
No 422
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=35.50 E-value=3.1e+02 Score=29.55 Aligned_cols=83 Identities=19% Similarity=0.199 Sum_probs=47.8
Q ss_pred ceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCC-HHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcCh
Q 010211 309 IHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIED-VPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTR 386 (515)
Q Consensus 309 i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e~-v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~Ptr 386 (515)
+.+..++......+-.+.+++. +|.|.+.-..-....+... -+ ..+.+.+++.++||+.. ...|.
T Consensus 132 V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~---~~i~~~ik~~~ipVIaG----------~V~t~ 198 (368)
T PRK08649 132 VIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEP---LNLKEFIYELDVPVIVG----------GCVTY 198 (368)
T ss_pred EEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCH---HHHHHHHHHCCCCEEEe----------CCCCH
Confidence 4444556545567777777776 8999985322222221111 11 22455566679998762 13333
Q ss_pred HHHhHHHHHHHhCCcEEeecc
Q 010211 387 AEVSDIAIAVREGADAVMLSG 407 (515)
Q Consensus 387 AEv~DvanaV~~G~D~vmLs~ 407 (515)
. +...++..|+|+||...
T Consensus 199 e---~A~~l~~aGAD~V~VG~ 216 (368)
T PRK08649 199 T---TALHLMRTGAAGVLVGI 216 (368)
T ss_pred H---HHHHHHHcCCCEEEECC
Confidence 3 34466678999999863
No 423
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=35.49 E-value=4.2e+02 Score=25.67 Aligned_cols=127 Identities=17% Similarity=0.173 Sum_probs=61.7
Q ss_pred hHHHhhcchhcCCcEEEeccc--CCHHHHHHHHHHHHhcCCCceEEEEe-------cChh--hhhcHHHHHhh-----cC
Q 010211 269 DWEDIKFGVDNQVDFYAVSFV--KDAKVVHELKDYLKSCNADIHVIVKI-------ESAD--SIPNLHSIISA-----SD 332 (515)
Q Consensus 269 D~~dI~~al~~gvD~ValSfV--rsa~dv~~vr~~l~~~~~~i~IIaKI-------Et~~--aveNldeIl~~-----sD 332 (515)
+.+|++..++.|+|.|.+... .+++.+ +++.+...+++.+-..+ .... .-.+..|+++. +|
T Consensus 85 ~~ed~~~~~~~Ga~~vilg~~~l~~~~~l---~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~ 161 (233)
T PRK00748 85 SLETVEALLDAGVSRVIIGTAAVKNPELV---KEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVK 161 (233)
T ss_pred CHHHHHHHHHcCCCEEEECchHHhCHHHH---HHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCC
Confidence 556777777789998877532 333333 44333333332221111 1110 01223333332 57
Q ss_pred eeEEc-CCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhC-CcEEeeccccc
Q 010211 333 GAMVA-RGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREG-ADAVMLSGETA 410 (515)
Q Consensus 333 gImIg-rgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G-~D~vmLs~ETa 410 (515)
.+++- +.-=+..-| .++ ...+++ ++....|++.+ .+.-+.. |+..+...| +|++|+..---
T Consensus 162 ~ii~~~~~~~g~~~G-~d~-~~i~~l---~~~~~ipvia~---------GGi~~~~---di~~~~~~g~~~gv~vg~a~~ 224 (233)
T PRK00748 162 AIIYTDISRDGTLSG-PNV-EATREL---AAAVPIPVIAS---------GGVSSLD---DIKALKGLGAVEGVIVGRALY 224 (233)
T ss_pred EEEEeeecCcCCcCC-CCH-HHHHHH---HHhCCCCEEEe---------CCCCCHH---HHHHHHHcCCccEEEEEHHHH
Confidence 66654 221122223 222 233333 44557999884 4555544 455556667 99999864333
Q ss_pred CCCCH
Q 010211 411 HGKFP 415 (515)
Q Consensus 411 ~G~yP 415 (515)
.|+++
T Consensus 225 ~~~~~ 229 (233)
T PRK00748 225 EGKFD 229 (233)
T ss_pred cCCcC
Confidence 45544
No 424
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=35.45 E-value=93 Score=33.60 Aligned_cols=69 Identities=10% Similarity=0.095 Sum_probs=44.8
Q ss_pred HHHhhcchhcCCcEEEecccC------CHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh----cCeeEEcCC
Q 010211 270 WEDIKFGVDNQVDFYAVSFVK------DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARG 339 (515)
Q Consensus 270 ~~dI~~al~~gvD~ValSfVr------sa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~----sDgImIgrg 339 (515)
.+|.+.+.+.|+|+|.+|--- ....+..+.+.....+.++.||+- -||.+-.+|++. +|++||||-
T Consensus 239 ~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~d----GGIr~g~Dv~KaLalGAd~V~igR~ 314 (367)
T TIGR02708 239 PEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFD----SGVRRGQHVFKALASGADLVALGRP 314 (367)
T ss_pred HHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEee----CCcCCHHHHHHHHHcCCCEEEEcHH
Confidence 466677788999999877421 122345555554444556777763 366666666655 899999997
Q ss_pred ccc
Q 010211 340 DLG 342 (515)
Q Consensus 340 DLg 342 (515)
=|-
T Consensus 315 ~l~ 317 (367)
T TIGR02708 315 VIY 317 (367)
T ss_pred HHH
Confidence 543
No 425
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=35.35 E-value=2.5e+02 Score=30.25 Aligned_cols=108 Identities=13% Similarity=0.108 Sum_probs=70.1
Q ss_pred CceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcc---cccCCCCCHHHHHHHHHHHHHhcCCcEE----E-E-e--ccc
Q 010211 308 DIHVIVKIESADSIPNLHSIISA-SDGAMVARGDL---GAELPIEDVPLLQEDIIRRCRSMQKPVI----V-A-T--NML 375 (515)
Q Consensus 308 ~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDL---g~elg~e~v~~aqk~Ii~~c~~aGKPvi----v-A-T--qmL 375 (515)
.++|...+.....++.+..-+.. .+.|||.-..| -..+++++=...-+++++.|+.+|..|= . . . +|-
T Consensus 73 ~VPValHLDHg~~~e~i~~Ai~~GFtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVEaELG~igg~e~~~~ 152 (347)
T TIGR01521 73 HIPVVMHQDHGNSPATCQRAIQLGFTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVEGELGCLGSLETGMG 152 (347)
T ss_pred CCcEEEECCCCCCHHHHHHHHHcCCCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeccccccccc
Confidence 47899999998766655555555 78999975544 1235788888899999999999999871 1 1 0 000
Q ss_pred ---cccccCC----CcChHHHhHHHHHHH-hCCcEEeecccccCCCCH
Q 010211 376 ---ESMIDHP----TPTRAEVSDIAIAVR-EGADAVMLSGETAHGKFP 415 (515)
Q Consensus 376 ---eSMi~~~----~PtrAEv~DvanaV~-~G~D~vmLs~ETa~G~yP 415 (515)
+.-.... .-....-.+...|+. -|+|++..+--|+.|.|+
T Consensus 153 g~~d~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk 200 (347)
T TIGR01521 153 EAEDGHGFEGVLDHSQLLTDPEEAADFVKKTKVDALAVAIGTSHGAYK 200 (347)
T ss_pred ccccCcccccccchhhcCCCHHHHHHHHHHHCcCEEehhcccccCCcC
Confidence 0000000 000011234456775 499999999999999995
No 426
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=35.23 E-value=1.1e+02 Score=32.63 Aligned_cols=93 Identities=19% Similarity=0.166 Sum_probs=57.0
Q ss_pred HHHhhcchhcCCcEEEeccc---------CCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh----cCeeEE
Q 010211 270 WEDIKFGVDNQVDFYAVSFV---------KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMV 336 (515)
Q Consensus 270 ~~dI~~al~~gvD~ValSfV---------rsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~----sDgImI 336 (515)
.++.+.+.+.|+|+|.+|-- .+.+-+.++++++...+.++.||+ --||.|=.+|++. +|+++|
T Consensus 224 ~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~----~GGIr~G~Dv~kalaLGA~aV~i 299 (344)
T cd02922 224 VEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYV----DGGVRRGTDVLKALCLGAKAVGL 299 (344)
T ss_pred HHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEE----eCCCCCHHHHHHHHHcCCCEEEE
Confidence 45667778899999998752 122334455555545455677775 3477777777776 899999
Q ss_pred cCCcccccC--CCCC----HHHHHHHHHHHHHhcCC
Q 010211 337 ARGDLGAEL--PIED----VPLLQEDIIRRCRSMQK 366 (515)
Q Consensus 337 grgDLg~el--g~e~----v~~aqk~Ii~~c~~aGK 366 (515)
||.=|-.-. |.+. +..+++++-......|.
T Consensus 300 G~~~l~~l~~~G~~gv~~~l~~l~~EL~~~m~l~G~ 335 (344)
T cd02922 300 GRPFLYALSAYGEEGVEKAIQILKDEIETTMRLLGV 335 (344)
T ss_pred CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 987664332 3333 33344555555555553
No 427
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=35.21 E-value=74 Score=32.34 Aligned_cols=54 Identities=24% Similarity=0.343 Sum_probs=38.3
Q ss_pred HHHHHHHHHhCCcEEEEec-CC--C----C-hHHHHHHHHHHHHHHhhcCCceEEEEEecCCCee
Q 010211 114 REMIWKLAEEGMNVARLNM-SH--G----D-HASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEV 170 (515)
Q Consensus 114 ~e~i~~li~aGm~v~RiN~-SH--g----~-~e~~~~~i~~ir~~~~~~~~~~i~I~lDL~GPkI 170 (515)
.+..++++++|+++.=+|+ |- | + .++++++...|+.+.+..+ +.|.+|+.-|++
T Consensus 26 ~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~---~plsiDT~~~~v 87 (257)
T TIGR01496 26 VAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPD---VPISVDTYRAEV 87 (257)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCC---CeEEEeCCCHHH
Confidence 4567778999999999984 22 1 2 2466677777777765544 568999988864
No 428
>COG1312 UxuA D-mannonate dehydratase [Carbohydrate transport and metabolism]
Probab=35.18 E-value=39 Score=36.09 Aligned_cols=58 Identities=26% Similarity=0.467 Sum_probs=34.1
Q ss_pred eeeccCCCCccccch--------hHhhhhhccCCCCCCCCCCccCCCCCCCCeEEEEe--cCCCC--CCHHHHHHHHHhC
Q 010211 57 MRISHDNHAPKISLF--------EESLSSIFELPNGQCTPGKGVVGPNARRKTKIVCT--IGPST--SSREMIWKLAEEG 124 (515)
Q Consensus 57 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~r~TKIi~T--iGPss--~~~e~i~~li~aG 124 (515)
+.+||+|.| ..++ .+.+++++.+..-.. +.--+|| +|-.+ +=+++++++..
T Consensus 208 maiHPDDPP--~pi~GLpRIvst~ed~~~ll~~vdSp~-------------NGiTlCtGS~G~~~dnDl~~mir~F~~-- 270 (362)
T COG1312 208 MAIHPDDPP--WPIFGLPRIVSTIEDYQRLLEMVDSPY-------------NGITLCTGSLGARADNDLPEMIREFAS-- 270 (362)
T ss_pred EEeCCCCCC--ccccCcchhcCCHHHHHHHHHhccCcc-------------CCEEEeccccccCccccHHHHHHHHhh--
Confidence 349999988 5555 556777766553221 2222343 34433 34566666655
Q ss_pred CcEEEEecCCC
Q 010211 125 MNVARLNMSHG 135 (515)
Q Consensus 125 m~v~RiN~SHg 135 (515)
||.|+|-
T Consensus 271 ----rI~F~H~ 277 (362)
T COG1312 271 ----RIHFVHL 277 (362)
T ss_pred ----hchhhhh
Confidence 9999995
No 429
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=35.01 E-value=5.7e+02 Score=27.00 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=16.6
Q ss_pred CCCHhhHHHh--------hcchhcCCcEEEec
Q 010211 264 SITDKDWEDI--------KFGVDNQVDFYAVS 287 (515)
Q Consensus 264 ~ltekD~~dI--------~~al~~gvD~ValS 287 (515)
.+|..|++.+ +.+.+.|+|+|=+-
T Consensus 130 ~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih 161 (343)
T cd04734 130 AMEEEDIEEIIAAFADAARRCQAGGLDGVELQ 161 (343)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 5788887666 24456899998543
No 430
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=34.82 E-value=2e+02 Score=29.80 Aligned_cols=99 Identities=16% Similarity=0.229 Sum_probs=0.0
Q ss_pred CceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEecccc--------cc
Q 010211 308 DIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLE--------SM 378 (515)
Q Consensus 308 ~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLe--------SM 378 (515)
.++|...+....-++.+.+-++. .+.||+---+| +.++....-+++.+.|+++|.|+-.---.|- --
T Consensus 74 ~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d~s~~----~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g 149 (281)
T PRK06806 74 KVPVAVHFDHGMTFEKIKEALEIGFTSVMFDGSHL----PLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIE 149 (281)
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCCEEEEcCCCC----CHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCccccc
Q ss_pred ccCCCcChHHHhHHHHHHHh-CCcEEeecccccCCCCH
Q 010211 379 IDHPTPTRAEVSDIAIAVRE-GADAVMLSGETAHGKFP 415 (515)
Q Consensus 379 i~~~~PtrAEv~DvanaV~~-G~D~vmLs~ETa~G~yP 415 (515)
.....|..++ .++.. |+|.+-++--|..|.||
T Consensus 150 ~s~t~~eea~-----~f~~~tg~DyLAvaiG~~hg~~~ 182 (281)
T PRK06806 150 MLLTSTTEAK-----RFAEETDVDALAVAIGNAHGMYN 182 (281)
T ss_pred ceeCCHHHHH-----HHHHhhCCCEEEEccCCCCCCCC
No 431
>PRK08328 hypothetical protein; Provisional
Probab=34.74 E-value=2.3e+02 Score=28.09 Aligned_cols=63 Identities=14% Similarity=0.091 Sum_probs=43.6
Q ss_pred HHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 010211 298 LKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (515)
Q Consensus 298 vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivA 371 (515)
+++.+.+.|.++.|-+--+.. .-+|++++++-.|.|+-+- .. +.....+-+.|+++|+|++.+
T Consensus 87 a~~~l~~~np~v~v~~~~~~~-~~~~~~~~l~~~D~Vid~~---------d~-~~~r~~l~~~~~~~~ip~i~g 149 (231)
T PRK08328 87 AKWKLERFNSDIKIETFVGRL-SEENIDEVLKGVDVIVDCL---------DN-FETRYLLDDYAHKKGIPLVHG 149 (231)
T ss_pred HHHHHHHhCCCCEEEEEeccC-CHHHHHHHHhcCCEEEECC---------CC-HHHHHHHHHHHHHcCCCEEEE
Confidence 455666778888777644443 3467888888788888762 22 345556777899999999864
No 432
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=34.62 E-value=86 Score=26.88 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=24.2
Q ss_pred CCcEEEecCCEEEEEeecCCCCcceEEecccccccccCcCCE
Q 010211 176 PQPIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDI 217 (515)
Q Consensus 176 ~~~i~L~~G~~v~lt~~~~~~~~~~i~v~~~~l~~~v~~Gd~ 217 (515)
+..+.+++|+.++|+..+.......+.++.-++-..+.+|+.
T Consensus 34 P~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~~~~~l~~g~~ 75 (104)
T PF13473_consen 34 PSTITVKAGQPVTLTFTNNDSRPHEFVIPDLGISKVLPPGET 75 (104)
T ss_dssp S-EEEEETTCEEEEEEEE-SSS-EEEEEGGGTEEEEE-TT-E
T ss_pred cCEEEEcCCCeEEEEEEECCCCcEEEEECCCceEEEECCCCE
Confidence 457999999988877654333335566555445556666654
No 433
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=34.59 E-value=5.1e+02 Score=26.32 Aligned_cols=141 Identities=21% Similarity=0.266 Sum_probs=85.1
Q ss_pred CHhhH-HHhhcchh-cCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEE--EecChhhhhcHHHHHhh-----cCeeEE
Q 010211 266 TDKDW-EDIKFGVD-NQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIV--KIESADSIPNLHSIISA-----SDGAMV 336 (515)
Q Consensus 266 tekD~-~dI~~al~-~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIa--KIEt~~aveNldeIl~~-----sDgImI 336 (515)
+++++ +.+....+ +++|+|=+-+-...+++.++.++-.+.| .|++ --|.-...+++.+++.. +|.+=|
T Consensus 76 ~~~~~i~ll~~la~~~~~d~iDiEl~~~~~~~~~~~~~~~~~~---vI~SyH~F~~TP~~~~i~~~l~km~~~~aDivKi 152 (231)
T COG0710 76 SEEEYIELLKKLAELNGPDYIDIELSSPEDDVKEIIKFAKKHG---VIVSYHDFEKTPPLEEIIERLDKMESLGADIVKI 152 (231)
T ss_pred CHHHHHHHHHHHHhhcCCCEEEEEccCcchhHHHHHhccccCC---EEEEeccCCCCCcHHHHHHHHHHHHhhCCCeEEE
Confidence 44555 55555555 4699988876555556666666655443 3333 12333344455555543 365555
Q ss_pred cCCcccccCCC--CCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEe--ecccccCC
Q 010211 337 ARGDLGAELPI--EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVM--LSGETAHG 412 (515)
Q Consensus 337 grgDLg~elg~--e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vm--Ls~ETa~G 412 (515)
+ -|+- +++....+.....-. +++|+++. ||-..+.++|.- +.+. |+.... +-..+|=|
T Consensus 153 A------vm~~~~~DvL~ll~~~~~~~~-~~~p~i~i-----~MG~~G~~SRv~-----~~~~-GS~~tya~~~~~sAPG 214 (231)
T COG0710 153 A------VMPQSKEDVLDLLEATREFKE-AEKPVITI-----SMGKTGKISRVA-----GPVF-GSPITYASLDKPSAPG 214 (231)
T ss_pred E------ecCCCHHHHHHHHHHHHhccc-cCCCEEEE-----ecCCCCchhhhh-----Hhhh-CCceeEeecCCCCCCC
Confidence 4 2322 455555554443333 89999874 788888888863 4443 555544 66678999
Q ss_pred CCHHHHHHHHHHHHH
Q 010211 413 KFPLKAVKVMHTVAL 427 (515)
Q Consensus 413 ~yPveaV~~m~~I~~ 427 (515)
..+++.++.+-.+..
T Consensus 215 Qi~v~~l~~~~~~l~ 229 (231)
T COG0710 215 QISVDELRKILTLLG 229 (231)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999998888776643
No 434
>PLN02979 glycolate oxidase
Probab=34.45 E-value=3.1e+02 Score=29.77 Aligned_cols=90 Identities=20% Similarity=0.251 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh----cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcC-
Q 010211 291 DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQ- 365 (515)
Q Consensus 291 sa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~----sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aG- 365 (515)
+-+|+..+|+.- +.+||+| +|-+.++.... +|+|.|+-.-=.. ....+....-+.+...+.+
T Consensus 211 tW~dl~wlr~~~-----~~PvivK-----gV~~~~dA~~a~~~Gvd~I~VsnhGGrq---ld~~p~t~~~L~ei~~~~~~ 277 (366)
T PLN02979 211 SWKDVQWLQTIT-----KLPILVK-----GVLTGEDARIAIQAGAAGIIVSNHGARQ---LDYVPATISALEEVVKATQG 277 (366)
T ss_pred CHHHHHHHHhcc-----CCCEEee-----cCCCHHHHHHHHhcCCCEEEECCCCcCC---CCCchhHHHHHHHHHHHhCC
Q ss_pred -CcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEee
Q 010211 366 -KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 405 (515)
Q Consensus 366 -KPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmL 405 (515)
.|++. ..+.-+ -.|++.++..|+|++++
T Consensus 278 ~~~Vi~---------dGGIr~---G~Di~KALALGAdaV~i 306 (366)
T PLN02979 278 RIPVFL---------DGGVRR---GTDVFKALALGASGIFI 306 (366)
T ss_pred CCeEEE---------eCCcCc---HHHHHHHHHcCCCEEEE
No 435
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=34.11 E-value=5.9e+02 Score=26.94 Aligned_cols=150 Identities=16% Similarity=0.142 Sum_probs=84.5
Q ss_pred CCHhhHHHhhcc-hhcCCcEEEe---------cccC---CHHHHHHHHHHHHhcCCCceEEEEecChh-hhhcHHHHHhh
Q 010211 265 ITDKDWEDIKFG-VDNQVDFYAV---------SFVK---DAKVVHELKDYLKSCNADIHVIVKIESAD-SIPNLHSIISA 330 (515)
Q Consensus 265 ltekD~~dI~~a-l~~gvD~Val---------SfVr---sa~dv~~vr~~l~~~~~~i~IIaKIEt~~-aveNldeIl~~ 330 (515)
++..++..|..+ -+.|+|.|=+ ||.. ...+...++...+.. .+.++.+.+---. -++.++.-.+.
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~-~~~~~~~ll~pg~~~~~dl~~a~~~ 99 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVV-KRAKVAVLLLPGIGTVHDLKAAYDA 99 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhC-CCCEEEEEeccCccCHHHHHHHHHC
Confidence 466777666544 4579998866 3321 123444455444432 3344443432100 02223333333
Q ss_pred -cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHH-HHhCCcEEeeccc
Q 010211 331 -SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIA-VREGADAVMLSGE 408 (515)
Q Consensus 331 -sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~Dvana-V~~G~D~vmLs~E 408 (515)
+|.|-|+ ....+.. ..++.++.+++.|..+... ++.+ + .-+..++.+.+.. ...|+|++-+. +
T Consensus 100 gvd~iri~-------~~~~e~d-~~~~~i~~ak~~G~~v~~~--l~~s--~--~~~~e~l~~~a~~~~~~Ga~~i~i~-D 164 (333)
T TIGR03217 100 GARTVRVA-------THCTEAD-VSEQHIGMARELGMDTVGF--LMMS--H--MTPPEKLAEQAKLMESYGADCVYIV-D 164 (333)
T ss_pred CCCEEEEE-------eccchHH-HHHHHHHHHHHcCCeEEEE--EEcc--c--CCCHHHHHHHHHHHHhcCCCEEEEc-c
Confidence 6777765 1223333 4578899999999887653 2222 2 2234455555544 45699999885 8
Q ss_pred ccCCCCHHHHHHHHHHHHHHHh
Q 010211 409 TAHGKFPLKAVKVMHTVALRTE 430 (515)
Q Consensus 409 Ta~G~yPveaV~~m~~I~~~aE 430 (515)
|+=..+|.+.-+....+..+..
T Consensus 165 T~G~~~P~~v~~~v~~l~~~l~ 186 (333)
T TIGR03217 165 SAGAMLPDDVRDRVRALKAVLK 186 (333)
T ss_pred CCCCCCHHHHHHHHHHHHHhCC
Confidence 8888899887777777665543
No 436
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=34.09 E-value=77 Score=31.80 Aligned_cols=61 Identities=30% Similarity=0.455 Sum_probs=34.7
Q ss_pred hcHHHHHhh--cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhC
Q 010211 322 PNLHSIISA--SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREG 399 (515)
Q Consensus 322 eNldeIl~~--sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G 399 (515)
+.+++++.. .|+|||| |=++++.-.+++..+.|+ ..+ ..|++. + |... +.+..|
T Consensus 15 ~~~~~~~~~~gtdai~vG-GS~~v~~~~~~~~~~ik~----~~~-~~Pvil---------f---p~~~------~~i~~~ 70 (219)
T cd02812 15 EEIAKLAEESGTDAIMVG-GSDGVSSTLDNVVRLIKR----IRR-PVPVIL---------F---PSNP------EAVSPG 70 (219)
T ss_pred HHHHHHHHhcCCCEEEEC-CccchhhhHHHHHHHHHH----hcC-CCCEEE---------e---CCCc------cccCcC
Confidence 446777774 6999999 544443111222222222 223 699998 2 4333 235678
Q ss_pred CcEEeec
Q 010211 400 ADAVMLS 406 (515)
Q Consensus 400 ~D~vmLs 406 (515)
+|++++-
T Consensus 71 aDa~l~~ 77 (219)
T cd02812 71 ADAYLFP 77 (219)
T ss_pred CCEEEEE
Confidence 9998853
No 437
>PLN02303 urease
Probab=34.08 E-value=9.2e+02 Score=29.15 Aligned_cols=74 Identities=16% Similarity=0.175 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEE
Q 010211 291 DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVI 369 (515)
Q Consensus 291 sa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvi 369 (515)
+++.+....+..+...-++.+..+.+. ..++.+.+.++. +.|+.+. +|.+. -+...++.++.|+++|.|+.
T Consensus 443 g~e~I~~~L~aa~~~pvn~Gf~gkG~~-s~l~eL~elieaGa~GfK~h-~d~gv------TpelL~raLe~AkelGVpVa 514 (837)
T PLN02303 443 APSHMKLMLQSTDDLPLNFGFTGKGNT-AKPEGLHEIIKAGAMGLKLH-EDWGT------TPAAIDNCLDVAEEYDIQVT 514 (837)
T ss_pred CHHHHHHHHHhcccCCCcEEEEccCcc-cCHHHHHHHHHcCcEEEEEC-CCCCC------CHHHHHHHHHHHHHcCCEEE
Confidence 455555444432222335556666543 334444554433 4454432 23222 27788999999999999998
Q ss_pred EEe
Q 010211 370 VAT 372 (515)
Q Consensus 370 vAT 372 (515)
+.+
T Consensus 515 IHA 517 (837)
T PLN02303 515 IHT 517 (837)
T ss_pred Eec
Confidence 854
No 438
>PRK12346 transaldolase A; Provisional
Probab=33.87 E-value=75 Score=33.66 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=32.2
Q ss_pred hcchhcCCcEEEecccCCHHHH---------------------HHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh
Q 010211 274 KFGVDNQVDFYAVSFVKDAKVV---------------------HELKDYLKSCNADIHVIVKIESADSIPNLHSIISA 330 (515)
Q Consensus 274 ~~al~~gvD~ValSfVrsa~dv---------------------~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~ 330 (515)
..+.+.|+++|+ |||.+-.|+ .++.+|++..+.++.|++ .++.|.++|+..
T Consensus 164 ~~aa~AGa~~IS-PfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~T~Vm~-----ASfRn~~qi~al 235 (316)
T PRK12346 164 RACAEAGVFLIS-PFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHRYETIVMG-----ASFRRTEQILAL 235 (316)
T ss_pred HHHHHcCCCEEE-ecccHHHHhhhhccccccccccCCChHHHHHHHHHHHHHcCCCcEEEe-----cccCCHHHHHHH
Confidence 344577999876 899988773 334455555555566554 255666666644
No 439
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=33.80 E-value=2e+02 Score=24.95 Aligned_cols=67 Identities=13% Similarity=0.171 Sum_probs=44.5
Q ss_pred CcEEEecCCEEEEEeec--CCCCcceEEecccccccccCcCCEEEEe-CCeeEEEEEEEeC-C-eEEEEEeeCc
Q 010211 177 QPIILKEGQEFNFTIKR--GVSTEDTVSVNYDDFVNDVEVGDILLVD-GGMMSLAVKSKTK-D-LVKCIVVDGG 245 (515)
Q Consensus 177 ~~i~L~~G~~v~lt~~~--~~~~~~~i~v~~~~l~~~v~~Gd~IliD-DG~I~l~V~~~~~-~-~v~~~V~~gG 245 (515)
+++.+.+|+.+.|..+. +.......|++.. ...+....+|.++ ||.+.+.=.+..+ . ...|.+.+.+
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~--~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~ 82 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSD--LLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPG 82 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECCC--CccccccccEEECCCceEEEEEEehhhCCCCeEEEEEccc
Confidence 46899999999998863 2233445666432 2334557788886 6888776555443 3 4889988764
No 440
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=33.80 E-value=3.3e+02 Score=28.54 Aligned_cols=101 Identities=16% Similarity=0.185 Sum_probs=49.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCceEEEEecCh--hhhhcHHHHHh----h-cCeeEEcCCccccc-CCCCCHHHHHHHHHHH
Q 010211 289 VKDAKVVHELKDYLKSCNADIHVIVKIESA--DSIPNLHSIIS----A-SDGAMVARGDLGAE-LPIEDVPLLQEDIIRR 360 (515)
Q Consensus 289 Vrsa~dv~~vr~~l~~~~~~i~IIaKIEt~--~aveNldeIl~----~-sDgImIgrgDLg~e-lg~e~v~~aqk~Ii~~ 360 (515)
.++++-+.++-+.+.+. -++.+.+||=.- ...++..++++ . +|+|.|-...-..- -|...+ ..+-+.
T Consensus 115 l~~p~~~~eiv~av~~a-~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~----~~i~~i 189 (321)
T PRK10415 115 LQYPDLVKSILTEVVNA-VDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEY----DSIRAV 189 (321)
T ss_pred hcCHHHHHHHHHHHHHh-cCCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcCh----HHHHHH
Confidence 34455555544444332 256788888210 01112333332 2 68887653321111 122222 222233
Q ss_pred HHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHH-hCCcEEeec
Q 010211 361 CRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVR-EGADAVMLS 406 (515)
Q Consensus 361 c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~-~G~D~vmLs 406 (515)
.++.+.|||. ....-+.+ |+..++. .|+|+||+.
T Consensus 190 k~~~~iPVI~---------nGgI~s~~---da~~~l~~~gadgVmiG 224 (321)
T PRK10415 190 KQKVSIPVIA---------NGDITDPL---KARAVLDYTGADALMIG 224 (321)
T ss_pred HHhcCCcEEE---------eCCCCCHH---HHHHHHhccCCCEEEEC
Confidence 4456799887 33444443 3445554 599999985
No 441
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=33.69 E-value=3.3e+02 Score=28.08 Aligned_cols=97 Identities=16% Similarity=0.182 Sum_probs=53.0
Q ss_pred HHHhhcchhcCCcEEEe-cccCC----H----HHHHHHHHHHHhcCCCceEEEEecChhh----hhcHHHHHhh------
Q 010211 270 WEDIKFGVDNQVDFYAV-SFVKD----A----KVVHELKDYLKSCNADIHVIVKIESADS----IPNLHSIISA------ 330 (515)
Q Consensus 270 ~~dI~~al~~gvD~Val-SfVrs----a----~dv~~vr~~l~~~~~~i~IIaKIEt~~a----veNldeIl~~------ 330 (515)
.+.+.-|...|+|||-+ .|+.. . ....++-.|-++.+.+++|++-|--+.+ -.+++|++..
T Consensus 92 ~aal~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~~~l~~~~~~e~a~~~~~~~~ 171 (257)
T TIGR00259 92 VAALAIAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLGSEVKILADIVVKHAVHLGNRDLESIALDTVERGL 171 (257)
T ss_pred HHHHHHHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHcCCCcEEEeceeecccCcCCCCCHHHHHHHHHHhcC
Confidence 35566666678998877 44321 1 1122333344444578999986643333 3467787763
Q ss_pred cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEe
Q 010211 331 SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVAT 372 (515)
Q Consensus 331 sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivAT 372 (515)
+|||++. |...|.+-=....+++-+ ..-..|+++++
T Consensus 172 aDavivt----G~~TG~~~d~~~l~~vr~--~~~~~Pvllgg 207 (257)
T TIGR00259 172 ADAVILS----GKTTGTEVDLELLKLAKE--TVKDTPVLAGS 207 (257)
T ss_pred CCEEEEC----cCCCCCCCCHHHHHHHHh--ccCCCeEEEEC
Confidence 7999997 334443322222222221 12357999974
No 442
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=33.39 E-value=6.5e+02 Score=27.17 Aligned_cols=77 Identities=17% Similarity=0.251 Sum_probs=54.7
Q ss_pred CceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChH
Q 010211 308 DIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRA 387 (515)
Q Consensus 308 ~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrA 387 (515)
.+.+++-+-+.+.++-+.+ .+|.+-||-+++.- -.+++++.+.||||++.| ...+|-.
T Consensus 165 Gl~~~tev~d~~~v~~~~~---~~d~lqIga~~~~n-----------~~LL~~va~t~kPVllk~--------G~~~t~e 222 (352)
T PRK13396 165 GLGIITEVMDAADLEKIAE---VADVIQVGARNMQN-----------FSLLKKVGAQDKPVLLKR--------GMAATID 222 (352)
T ss_pred CCcEEEeeCCHHHHHHHHh---hCCeEEECcccccC-----------HHHHHHHHccCCeEEEeC--------CCCCCHH
Confidence 4778888887777655544 58999999666532 334777888999999954 2344788
Q ss_pred HHhHHHHHHHh-CCcEEeec
Q 010211 388 EVSDIAIAVRE-GADAVMLS 406 (515)
Q Consensus 388 Ev~DvanaV~~-G~D~vmLs 406 (515)
|+...+..+.. |.+-++|.
T Consensus 223 e~~~A~e~i~~~Gn~~viL~ 242 (352)
T PRK13396 223 EWLMAAEYILAAGNPNVILC 242 (352)
T ss_pred HHHHHHHHHHHcCCCeEEEE
Confidence 88888887764 67656665
No 443
>PRK00568 carbon storage regulator; Provisional
Probab=33.24 E-value=92 Score=26.41 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=23.4
Q ss_pred cCcCCEEEEeCCeeEEEEEEEeCCeEEE
Q 010211 212 VEVGDILLVDGGMMSLAVKSKTKDLVKC 239 (515)
Q Consensus 212 v~~Gd~IliDDG~I~l~V~~~~~~~v~~ 239 (515)
=++|..|.|+| .|..+|.++.++.|+.
T Consensus 6 RK~gEsI~Igd-~I~I~Vl~i~g~~Vrl 32 (76)
T PRK00568 6 RKVNEGIVIDD-NIHIKVISIDRGSVRL 32 (76)
T ss_pred eeCCCeEEeCC-CeEEEEEEEcCCEEEE
Confidence 37899999998 6999999999998754
No 444
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=33.11 E-value=4.9e+02 Score=25.75 Aligned_cols=142 Identities=17% Similarity=0.229 Sum_probs=74.9
Q ss_pred hHHHhhcchhcCCcEEEec-------ccCCHHHHHHHHHHHHhcCCCceEEEEecChhh------------hhcHHHHHh
Q 010211 269 DWEDIKFGVDNQVDFYAVS-------FVKDAKVVHELKDYLKSCNADIHVIVKIESADS------------IPNLHSIIS 329 (515)
Q Consensus 269 D~~dI~~al~~gvD~ValS-------fVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~a------------veNldeIl~ 329 (515)
+.+++..|.+.|+|-|=+- ...|..-++.+++ ..++.|.++|--+.| .+.+....+
T Consensus 9 s~~~a~~A~~~GAdRiELc~~l~~GGlTPS~g~i~~~~~-----~~~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~ 83 (201)
T PF03932_consen 9 SLEDALAAEAGGADRIELCSNLEVGGLTPSLGLIRQARE-----AVDIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRE 83 (201)
T ss_dssp SHHHHHHHHHTT-SEEEEEBTGGGT-B---HHHHHHHHH-----HTTSEEEEE--SSSS-S---HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEECCCccCCCcCcCHHHHHHHHh-----hcCCceEEEECCCCCCccCCHHHHHHHHHHHHHHHH
Confidence 4566667777888876541 1233444444443 346889999976666 122222222
Q ss_pred h-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeeccc
Q 010211 330 A-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGE 408 (515)
Q Consensus 330 ~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~E 408 (515)
. +||+.+|-=+=.-++ + ..+.+++++.|. |.|+.+. |.+-..+...+ .+-..+..|+|.|+-||-
T Consensus 84 ~GadG~VfG~L~~dg~i---D-~~~~~~Li~~a~--~~~~tFH------RAfD~~~d~~~--al~~L~~lG~~rVLTSGg 149 (201)
T PF03932_consen 84 LGADGFVFGALTEDGEI---D-EEALEELIEAAG--GMPVTFH------RAFDEVPDPEE--ALEQLIELGFDRVLTSGG 149 (201)
T ss_dssp TT-SEEEE--BETTSSB-----HHHHHHHHHHHT--TSEEEE-------GGGGGSSTHHH--HHHHHHHHT-SEEEESTT
T ss_pred cCCCeeEEEeECCCCCc---C-HHHHHHHHHhcC--CCeEEEe------CcHHHhCCHHH--HHHHHHhcCCCEEECCCC
Confidence 3 799999732111111 1 145677777765 8888773 23333444444 233456679999998754
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhcC
Q 010211 409 TAHGKFPLKAVKVMHTVALRTESS 432 (515)
Q Consensus 409 Ta~G~yPveaV~~m~~I~~~aE~~ 432 (515)
. .-..+.+..++++++.+...
T Consensus 150 ~---~~a~~g~~~L~~lv~~a~~~ 170 (201)
T PF03932_consen 150 A---PTALEGIENLKELVEQAKGR 170 (201)
T ss_dssp S---SSTTTCHHHHHHHHHHHTTS
T ss_pred C---CCHHHHHHHHHHHHHHcCCC
Confidence 3 12336677888888777654
No 445
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=33.08 E-value=5.6e+02 Score=26.34 Aligned_cols=141 Identities=10% Similarity=0.116 Sum_probs=81.3
Q ss_pred hHHHhhcchhcCCcEEEe-------cccCCHHHHHHHHHHHHhcCCCceEEEEecChhh------------hhcHHHHHh
Q 010211 269 DWEDIKFGVDNQVDFYAV-------SFVKDAKVVHELKDYLKSCNADIHVIVKIESADS------------IPNLHSIIS 329 (515)
Q Consensus 269 D~~dI~~al~~gvD~Val-------SfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~a------------veNldeIl~ 329 (515)
+.++...|.+.|+|=|=+ ....|..-+..+++++ +++|.++|=-+.| .+.+....+
T Consensus 10 s~~~a~~A~~~GAdRiELc~~L~~GGlTPS~g~i~~~~~~~-----~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~ 84 (248)
T PRK11572 10 SMECALTAQQAGADRIELCAAPKEGGLTPSLGVLKSVRERV-----TIPVHPIIRPRGGDFCYSDGEFAAMLEDIATVRE 84 (248)
T ss_pred CHHHHHHHHHcCCCEEEEccCcCCCCcCCCHHHHHHHHHhc-----CCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 455666677778886644 2234455555555443 5788888843322 222333333
Q ss_pred h-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeeccc
Q 010211 330 A-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGE 408 (515)
Q Consensus 330 ~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~E 408 (515)
. +||+.+|-=+=--.+ +. ...+++++.| .+.|+.+. |.+--.+...+ .+-..+..|+|.|+-||-
T Consensus 85 ~GadGvV~G~L~~dg~v---D~-~~~~~Li~~a--~~~~vTFH------RAfD~~~d~~~--al~~l~~lG~~rILTSGg 150 (248)
T PRK11572 85 LGFPGLVTGVLDVDGHV---DM-PRMRKIMAAA--GPLAVTFH------RAFDMCANPLN--ALKQLADLGVARILTSGQ 150 (248)
T ss_pred cCCCEEEEeeECCCCCc---CH-HHHHHHHHHh--cCCceEEe------chhhccCCHHH--HHHHHHHcCCCEEECCCC
Confidence 3 899999732211111 22 2457777777 47887662 12222233322 344566779999998866
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhc
Q 010211 409 TAHGKFPLKAVKVMHTVALRTES 431 (515)
Q Consensus 409 Ta~G~yPveaV~~m~~I~~~aE~ 431 (515)
... ..+.+..+.++...+..
T Consensus 151 ~~~---a~~g~~~L~~lv~~a~~ 170 (248)
T PRK11572 151 QQD---AEQGLSLIMELIAASDG 170 (248)
T ss_pred CCC---HHHHHHHHHHHHHhcCC
Confidence 442 67888888888887764
No 446
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=32.98 E-value=2e+02 Score=28.15 Aligned_cols=70 Identities=19% Similarity=0.322 Sum_probs=48.0
Q ss_pred CCCeEEEEecC--CCCCC----HHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCce-EEEEEecCCC
Q 010211 98 RRKTKIVCTIG--PSTSS----REMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKA-VAIMLDTKGP 168 (515)
Q Consensus 98 ~r~TKIi~TiG--Pss~~----~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~-i~I~lDL~GP 168 (515)
..++|||.+-= ..+.+ .+.+++|.+.|.|+++|-..-.+.++..++++..+++.+..+ .| +++.|-=.|.
T Consensus 111 ~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~~~~~~~-~p~i~~~MG~~G~ 187 (224)
T PF01487_consen 111 KGGTKIILSYHDFEKTPSWEELIELLEEMQELGADIVKIAVMANSPEDVLRLLRFTKEFREEPD-IPVIAISMGELGR 187 (224)
T ss_dssp HTTSEEEEEEEESS---THHHHHHHHHHHHHTT-SEEEEEEE-SSHHHHHHHHHHHHHHHHHTS-SEEEEEEETGGGH
T ss_pred hCCCeEEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCHHHHHHHHHHHHHHhhccC-CcEEEEEcCCCch
Confidence 35788888763 22222 357788999999999999999999998888888888877644 55 4555544443
No 447
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=32.98 E-value=1.9e+02 Score=30.64 Aligned_cols=65 Identities=14% Similarity=0.171 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 010211 296 HELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (515)
Q Consensus 296 ~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivA 371 (515)
..+++.+.+.|.++.+-+-.+... -+|++++++-.|.|+.+-.+ +.....+-+.|.++|+|.+.+
T Consensus 83 ~aa~~~l~~inp~v~i~~~~~~~~-~~~~~~~~~~~DlVid~~D~----------~~~r~~in~~~~~~~ip~i~~ 147 (338)
T PRK12475 83 IAAKEHLRKINSEVEIVPVVTDVT-VEELEELVKEVDLIIDATDN----------FDTRLLINDLSQKYNIPWIYG 147 (338)
T ss_pred HHHHHHHHHHCCCcEEEEEeccCC-HHHHHHHhcCCCEEEEcCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 345677777788877766554432 46888888888988887322 234455778899999998865
No 448
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=32.87 E-value=6e+02 Score=27.69 Aligned_cols=114 Identities=15% Similarity=0.167 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEE
Q 010211 291 DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVI 369 (515)
Q Consensus 291 sa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvi 369 (515)
+-+|+..+++.. +.++|+| .....+.....++. +|+|.|+-.-=..--+.........+|.++.. .+.|++
T Consensus 233 tW~di~~lr~~~-----~~pvivK--gV~s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~-~~~~vi 304 (381)
T PRK11197 233 SWKDLEWIRDFW-----DGPMVIK--GILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVK-GDITIL 304 (381)
T ss_pred CHHHHHHHHHhC-----CCCEEEE--ecCCHHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhc-CCCeEE
Q ss_pred EEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHH---------HHHHHHHHHHh
Q 010211 370 VATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAV---------KVMHTVALRTE 430 (515)
Q Consensus 370 vATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV---------~~m~~I~~~aE 430 (515)
. ..+.-+ -.|++.++..|+|++++ |..-+.++ +++..+-.+.+
T Consensus 305 ~---------dGGIr~---g~Di~KALaLGA~~V~i------Gr~~l~~la~~G~~gv~~~l~~l~~El~ 356 (381)
T PRK11197 305 A---------DSGIRN---GLDVVRMIALGADTVLL------GRAFVYALAAAGQAGVANLLDLIEKEMR 356 (381)
T ss_pred e---------eCCcCc---HHHHHHHHHcCcCceeE------hHHHHHHHHhccHHHHHHHHHHHHHHHH
No 449
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=32.83 E-value=5.3e+02 Score=25.99 Aligned_cols=51 Identities=20% Similarity=0.330 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhc-CCcEEEEeccccccccCCCcChHHHhHHHHH-HHhCCcEEeeccc
Q 010211 350 VPLLQEDIIRRCRSM-QKPVIVATNMLESMIDHPTPTRAEVSDIAIA-VREGADAVMLSGE 408 (515)
Q Consensus 350 v~~aqk~Ii~~c~~a-GKPvivATqmLeSMi~~~~PtrAEv~Dvana-V~~G~D~vmLs~E 408 (515)
-+....+++++.++. ++|+++= ..+..+..+..+.+.+ ...|+|++.+++=
T Consensus 146 ~~~~~~eiv~~vr~~~~~pv~vK--------l~~~~~~~~~~~~a~~l~~~Gad~i~~~~~ 198 (289)
T cd02810 146 DPEAVANLLKAVKAAVDIPLLVK--------LSPYFDLEDIVELAKAAERAGADGLTAINT 198 (289)
T ss_pred CHHHHHHHHHHHHHccCCCEEEE--------eCCCCCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 355666777777665 8898872 2334454455555554 4569999998743
No 450
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=32.80 E-value=1.8e+02 Score=28.64 Aligned_cols=86 Identities=12% Similarity=0.076 Sum_probs=45.6
Q ss_pred HHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCC
Q 010211 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIED 349 (515)
Q Consensus 271 ~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e~ 349 (515)
+++..+.+.|+|+|.+ |-...-....++.+.+....++++++- =-. ..+|+.+.++. +|++-++.+=.......++
T Consensus 115 ~E~~~A~~~Gad~vk~-Fpa~~~G~~~l~~l~~~~~~~ipvvai-GGI-~~~n~~~~~~aGa~~vav~s~l~~~~~~~~~ 191 (206)
T PRK09140 115 TEAFAALRAGAQALKL-FPASQLGPAGIKALRAVLPPDVPVFAV-GGV-TPENLAPYLAAGAAGFGLGSALYRPGQSAEE 191 (206)
T ss_pred HHHHHHHHcCCCEEEE-CCCCCCCHHHHHHHHhhcCCCCeEEEE-CCC-CHHHHHHHHHCCCeEEEEehHhcccccChHH
Confidence 3456677889999987 322222233344433322224666552 111 23899999988 9999988443222222234
Q ss_pred HHHHHHHHHH
Q 010211 350 VPLLQEDIIR 359 (515)
Q Consensus 350 v~~aqk~Ii~ 359 (515)
+...-+++..
T Consensus 192 i~~~a~~~~~ 201 (206)
T PRK09140 192 VAERARAFVA 201 (206)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 451
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=32.74 E-value=3.2e+02 Score=27.46 Aligned_cols=113 Identities=14% Similarity=0.213 Sum_probs=59.1
Q ss_pred CCceEEEEecCh-----hhhhcHHHHHhh-cCeeEEcCCc----cc--ccC---CCCCHHHHHHHHHHHHHhc-CCcEEE
Q 010211 307 ADIHVIVKIESA-----DSIPNLHSIISA-SDGAMVARGD----LG--AEL---PIEDVPLLQEDIIRRCRSM-QKPVIV 370 (515)
Q Consensus 307 ~~i~IIaKIEt~-----~aveNldeIl~~-sDgImIgrgD----Lg--~el---g~e~v~~aqk~Ii~~c~~a-GKPviv 370 (515)
-.+++++-+|+- +..+|+..+++. ++||.|-=+. .| .+. +.++.....+.+.+++... ..+++.
T Consensus 68 ~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiA 147 (243)
T cd00377 68 VDLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIA 147 (243)
T ss_pred ccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 367899999982 344555565555 7899982111 11 111 2233333333333333332 233333
Q ss_pred EeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHHHHHHHHh
Q 010211 371 ATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTE 430 (515)
Q Consensus 371 ATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE 430 (515)
=|. +..........-+...-.+...|+|++|+- |.+ ..+.+.+++++..
T Consensus 148 RTD---a~~~~~~~~~eai~Ra~ay~~AGAD~v~v~-----~~~---~~~~~~~~~~~~~ 196 (243)
T cd00377 148 RTD---ALLAGEEGLDEAIERAKAYAEAGADGIFVE-----GLK---DPEEIRAFAEAPD 196 (243)
T ss_pred EcC---chhccCCCHHHHHHHHHHHHHcCCCEEEeC-----CCC---CHHHHHHHHhcCC
Confidence 221 111111122223667778889999999984 333 4577777777654
No 452
>PTZ00411 transaldolase-like protein; Provisional
Probab=32.60 E-value=98 Score=33.01 Aligned_cols=21 Identities=14% Similarity=0.010 Sum_probs=15.8
Q ss_pred hcchhcCCcEEEecccCCHHHH
Q 010211 274 KFGVDNQVDFYAVSFVKDAKVV 295 (515)
Q Consensus 274 ~~al~~gvD~ValSfVrsa~dv 295 (515)
..+.+.|+++|+ |||.+-.|.
T Consensus 175 ~aaaeAGa~~IS-PfVGRi~d~ 195 (333)
T PTZ00411 175 VACAQAGVTLIS-PFVGRILDW 195 (333)
T ss_pred HHHHHcCCCEEE-eecchHHHh
Confidence 344577998876 899988775
No 453
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=32.52 E-value=6.6e+02 Score=26.99 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=17.2
Q ss_pred CCCCHhhHHHh--------hcchhcCCcEEEe
Q 010211 263 PSITDKDWEDI--------KFGVDNQVDFYAV 286 (515)
Q Consensus 263 p~ltekD~~dI--------~~al~~gvD~Val 286 (515)
..+|..|++.| +.+.+.|+|+|=+
T Consensus 138 ~~mt~~eI~~ii~~f~~AA~ra~~AGfDgVEi 169 (382)
T cd02931 138 RELTTEEVETFVGKFGESAVIAKEAGFDGVEI 169 (382)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 45788888777 2446789999843
No 454
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=32.52 E-value=1.5e+02 Score=25.48 Aligned_cols=67 Identities=15% Similarity=0.202 Sum_probs=45.2
Q ss_pred hcchhcCCcEEEecc--cCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHh---hcCeeEEcCCccc
Q 010211 274 KFGVDNQVDFYAVSF--VKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIIS---ASDGAMVARGDLG 342 (515)
Q Consensus 274 ~~al~~gvD~ValSf--Vrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~---~sDgImIgrgDLg 342 (515)
+...+..+|.|++|. ..+.....++.+.+++.+.++.+++= -+.+-.+-+++++ .+|.+++|-|+.+
T Consensus 45 ~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~G--G~~~t~~~~~~l~~~~~~D~vv~GegE~~ 116 (121)
T PF02310_consen 45 EALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVG--GPHATADPEEILREYPGIDYVVRGEGEEA 116 (121)
T ss_dssp HHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEE--ESSSGHHHHHHHHHHHTSEEEEEETTSSH
T ss_pred HHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEE--CCchhcChHHHhccCcCcceecCCChHHh
Confidence 445567899999986 44555556666777777777776652 2223345577775 3799999998764
No 455
>KOG1261 consensus Malate synthase [Energy production and conversion]
Probab=32.29 E-value=76 Score=34.66 Aligned_cols=246 Identities=18% Similarity=0.175 Sum_probs=138.2
Q ss_pred ccCCCCCCCCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHH---HHHHHHhhcCCceEEEEEecCC
Q 010211 91 GVVGPNARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTID---LVKEYNSQFEDKAVAIMLDTKG 167 (515)
Q Consensus 91 ~~~~~~~~r~TKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~---~ir~~~~~~~~~~i~I~lDL~G 167 (515)
+..+....|++.| -||. ...++-.-+++|+|||--.|-...--.|+.+++ |+..+.. + -+|..-
T Consensus 91 ~ipp~l~dRrvEI---TGPp--~Rkm~iNalNsganvfMtDFEDs~SPtW~N~i~GqVNlyDAvr--n------~I~f~~ 157 (552)
T KOG1261|consen 91 IIPPGLIDRRVEI---TGPP--LRKMLINALNSGANVFMTDFEDSNSPTWENMIYGQVNLYDAVR--N------QIDFTT 157 (552)
T ss_pred cCCchhhhccccc---cCcc--hHHHHHHHhcccceeeeccccccCCccHhhhhhhhccHHHHhc--c------CccccC
Confidence 3333344677777 4775 355888889999999999999888778887765 1222211 1 122222
Q ss_pred CeeeeeccCCcEEEecCCEEEEEeecCCCCcceEEecccccccccCcCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEe
Q 010211 168 PEVRSGDVPQPIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGEL 247 (515)
Q Consensus 168 PkIRtG~l~~~i~L~~G~~v~lt~~~~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~~~~~~v~~~V~~gG~L 247 (515)
|--| ...+|....-+.+.--++. .+. ---|||||--+.-..-+-
T Consensus 158 ptt~-----keYkLn~~~a~L~VRPRGW------Hl~----------EkH~~Id~eP~sgslfDF--------------- 201 (552)
T KOG1261|consen 158 PTTR-----KEYKLNGKHAVLIVRPRGW------HLP----------EKHLLIDDEPISGSLFDF--------------- 201 (552)
T ss_pred CCcc-----ceeeecCceeEEEEccCcc------cCc----------hheeeecCCcccceeeee---------------
Confidence 2211 1233332222222211110 111 124555554333222111
Q ss_pred ccCceeeeCCCccCCCCCCHhhHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHH-------hcCCCceEEEEecChhh
Q 010211 248 KSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLK-------SCNADIHVIVKIESADS 320 (515)
Q Consensus 248 ~s~KgVnlpg~~~~lp~ltekD~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~-------~~~~~i~IIaKIEt~~a 320 (515)
|+.+ .-+ -++.++.+- |. |+-+|..+.+++.+-..+... -....+..-+-|||.-|
T Consensus 202 ----GLyf--------fHN--AK~li~~Gs--GP-yFYLPKmeh~~EaklWndvF~~aed~~Gi~RGtIraTVLIEtLpA 264 (552)
T KOG1261|consen 202 ----GLYF--------FHN--AKELIKQGS--GP-YFYLPKMEHHEEAKLWNDVFCVAEDKIGIPRGTIRATVLIETLPA 264 (552)
T ss_pred ----eeeE--------Eec--HHHHHhcCC--CC-eeecccccchHHHHHHHHHHHHHHHhcCCCcCceEEEEeHhhchH
Confidence 0000 001 223344442 44 556788888887766544432 22345677789999999
Q ss_pred hhcHHHHHhh----cCeeEEcCCccccc--------------------CCCCCHHHHHHHHHHHHHhcCCcE--EEEecc
Q 010211 321 IPNLHSIISA----SDGAMVARGDLGAE--------------------LPIEDVPLLQEDIIRRCRSMQKPV--IVATNM 374 (515)
Q Consensus 321 veNldeIl~~----sDgImIgrgDLg~e--------------------lg~e~v~~aqk~Ii~~c~~aGKPv--ivATqm 374 (515)
.=.++||+-. +-|+=-||=|.-.+ |+-+=+...-+++|..|++.|.-+ ++|.|+
T Consensus 265 ~FQm~EIiy~lrdhsvGLNCGRWDyifS~iKt~qnh~~~lLPdR~qv~Mt~pFMr~Ys~~lI~tCH~RGvHAMGGMAAqI 344 (552)
T KOG1261|consen 265 AFQMEEIIYQLRDHSVGLNCGRWDYIFSYIKTFQNHPDHLLPDRVQVGMTSPFMRAYSKRLINTCHRRGVHAMGGMAAQI 344 (552)
T ss_pred HHhHHHHHHHHHhhcccccccchHHHHHHHHHHhhCccccCCccceeccCcHHHHHHHHHHHHHHHhhcchhhccccccC
Confidence 9999999875 67777888775444 232456777899999999999886 566653
Q ss_pred ccccccCCCcChHH------HhHHHHHHHhCCcEEeec
Q 010211 375 LESMIDHPTPTRAE------VSDIAIAVREGADAVMLS 406 (515)
Q Consensus 375 LeSMi~~~~PtrAE------v~DvanaV~~G~D~vmLs 406 (515)
= -.-+|..-| -.|=-+-+.+|-|+....
T Consensus 345 P----IkdDp~ANekA~~lVr~DK~RE~t~GHDGtWvA 378 (552)
T KOG1261|consen 345 P----IKDDPKANEKAMALVRNDKIREVTNGHDGTWVA 378 (552)
T ss_pred c----cCCCcchhHHHHHHHhhhhhhhhhcCCCCceec
Confidence 2 112333223 233355677898887763
No 456
>TIGR00187 ribE riboflavin synthase, alpha subunit. The name ribE was selected, from among alternatives including ribB and ribC, to match the usage in EcoCyc.
Probab=31.99 E-value=1.8e+02 Score=28.81 Aligned_cols=55 Identities=27% Similarity=0.485 Sum_probs=43.8
Q ss_pred eEEeccc-ccccccCcCCEEEEeCCeeEEEEEEEeCCeEEEEEe-------eCcEeccCceeeeC
Q 010211 200 TVSVNYD-DFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVV-------DGGELKSRRHLNVR 256 (515)
Q Consensus 200 ~i~v~~~-~l~~~v~~Gd~IliDDG~I~l~V~~~~~~~v~~~V~-------~gG~L~s~KgVnlp 256 (515)
.+.+..+ .+.+.+++||-|-+|. +.|.|.+++++.+..-+. +=|.++.+.-||+.
T Consensus 23 ~l~i~~~~~~~~~l~~G~SIAvnG--vCLTV~~i~~~~f~vdvipETl~~TtL~~l~~G~~VNLE 85 (200)
T TIGR00187 23 SLVVNLADHMLDDLELGDSIAVNG--VCLTVTEINKNHFSVDLSPETLKRTNLGDLKVGTWVNIE 85 (200)
T ss_pred EEEEEeChHHhcccccCCEEEECc--EEEEEEEEcCCEEEEEEEHHHhhhcchhhCcCCCEEEEc
Confidence 4666666 6788999999999997 889999999888877764 34677777888885
No 457
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=31.84 E-value=72 Score=35.56 Aligned_cols=46 Identities=17% Similarity=0.327 Sum_probs=36.9
Q ss_pred EEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHH
Q 010211 104 VCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKE 149 (515)
Q Consensus 104 i~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~ 149 (515)
=+-+|.+.+..+.++.|+++|+++.=+..+||.-....++|+.||+
T Consensus 219 ~aav~~~~~~~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~ 264 (479)
T PRK07807 219 AAAVGINGDVAAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRA 264 (479)
T ss_pred HhhhccChhHHHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHH
Confidence 3345666677899999999999999999999997766666666664
No 458
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=31.76 E-value=5.4e+02 Score=25.82 Aligned_cols=147 Identities=16% Similarity=0.089 Sum_probs=84.2
Q ss_pred CHhhHHHh-hcchhcCCcEEEeccc------------CCHHHHHHHHHHHHhcCCCceEEEEecChhhhhc---HHHHHh
Q 010211 266 TDKDWEDI-KFGVDNQVDFYAVSFV------------KDAKVVHELKDYLKSCNADIHVIVKIESADSIPN---LHSIIS 329 (515)
Q Consensus 266 tekD~~dI-~~al~~gvD~ValSfV------------rsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveN---ldeIl~ 329 (515)
+.+++..+ +.-.+.|+|.|=+.|. ....+...++.+.+. ..+.++.+.+. .+.-| ++..++
T Consensus 20 ~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~-~~~~~~~~~~~--~~~~~~~~i~~a~~ 96 (263)
T cd07943 20 TLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEA-LKQAKLGVLLL--PGIGTVDDLKMAAD 96 (263)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHh-ccCCEEEEEec--CCccCHHHHHHHHH
Confidence 55666544 4445679998766532 112233334444333 23455554432 12223 333333
Q ss_pred h-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHH-HHhCCcEEeecc
Q 010211 330 A-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIA-VREGADAVMLSG 407 (515)
Q Consensus 330 ~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~Dvana-V~~G~D~vmLs~ 407 (515)
. .|.+-|. .+..++. ..++.++.+++.|..+.+.- ++.. .-+..++.+.+.. ...|+|.+-| .
T Consensus 97 ~g~~~iri~-------~~~s~~~-~~~~~i~~ak~~G~~v~~~~----~~~~--~~~~~~~~~~~~~~~~~G~d~i~l-~ 161 (263)
T cd07943 97 LGVDVVRVA-------THCTEAD-VSEQHIGAARKLGMDVVGFL----MMSH--MASPEELAEQAKLMESYGADCVYV-T 161 (263)
T ss_pred cCCCEEEEE-------echhhHH-HHHHHHHHHHHCCCeEEEEE----Eecc--CCCHHHHHHHHHHHHHcCCCEEEE-c
Confidence 3 6766552 2333443 45778999999999876642 1222 2344566665555 4459999988 5
Q ss_pred cccCCCCHHHHHHHHHHHHHHHh
Q 010211 408 ETAHGKFPLKAVKVMHTVALRTE 430 (515)
Q Consensus 408 ETa~G~yPveaV~~m~~I~~~aE 430 (515)
+|.=..+|.+.-+.+..+-++..
T Consensus 162 DT~G~~~P~~v~~lv~~l~~~~~ 184 (263)
T cd07943 162 DSAGAMLPDDVRERVRALREALD 184 (263)
T ss_pred CCCCCcCHHHHHHHHHHHHHhCC
Confidence 88888899888777777766544
No 459
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=31.73 E-value=2e+02 Score=30.54 Aligned_cols=65 Identities=12% Similarity=0.101 Sum_probs=46.2
Q ss_pred HHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 010211 296 HELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (515)
Q Consensus 296 ~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivA 371 (515)
..+++.|.+.|..+.+-+.-+... -+|..++++-.|.|+-+-.+ +.....+-+.|.++++|++.+
T Consensus 85 ~~a~~~l~~~np~v~v~~~~~~i~-~~~~~~~~~~~DvVvd~~d~----------~~~r~~~n~~c~~~~ip~v~~ 149 (355)
T PRK05597 85 ESAREAMLALNPDVKVTVSVRRLT-WSNALDELRDADVILDGSDN----------FDTRHLASWAAARLGIPHVWA 149 (355)
T ss_pred HHHHHHHHHHCCCcEEEEEEeecC-HHHHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 346677888888888776544443 35778888888988876322 245556778999999998865
No 460
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=31.68 E-value=2.1e+02 Score=30.48 Aligned_cols=65 Identities=15% Similarity=0.206 Sum_probs=44.1
Q ss_pred HHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEe
Q 010211 297 ELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVAT 372 (515)
Q Consensus 297 ~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivAT 372 (515)
.+.+.+.+.|..+.+.+.-+... -+|++++++-.|.|+-+-. . +..+..+-+.|++.++|++.+.
T Consensus 193 ~~~~~l~~~np~v~v~~~~~~~~-~~~~~~~~~~~D~Vv~~~d---------~-~~~r~~ln~~~~~~~ip~i~~~ 257 (376)
T PRK08762 193 SAAQRLAALNPDVQVEAVQERVT-SDNVEALLQDVDVVVDGAD---------N-FPTRYLLNDACVKLGKPLVYGA 257 (376)
T ss_pred HHHHHHHHHCCCCEEEEEeccCC-hHHHHHHHhCCCEEEECCC---------C-HHHHHHHHHHHHHcCCCEEEEE
Confidence 45566666677766655433333 2578888888888887622 2 2356678899999999998763
No 461
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=31.67 E-value=2.6e+02 Score=30.25 Aligned_cols=113 Identities=14% Similarity=0.161 Sum_probs=74.6
Q ss_pred CCceEEEEecChhhh--hcHHHHHhh------------cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEE-E
Q 010211 307 ADIHVIVKIESADSI--PNLHSIISA------------SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIV-A 371 (515)
Q Consensus 307 ~~i~IIaKIEt~~av--eNldeIl~~------------sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPviv-A 371 (515)
..+.|...+....-+ +.+...+.. .+.||+... ++++++=...-+++++.|++.|..|=- -
T Consensus 98 a~VPValHLDHg~~~~~~~i~~ai~ag~~~~~~~g~~gftSVMiDgS----~lpfeENI~~TrevVe~Ah~~GvsVEaEL 173 (357)
T TIGR01520 98 YGVPVVLHTDHCAKKLLPWVDGLLEAGEKYFSAHGKPLFSSHMIDLS----EEPIEENIEICVKYLKRMAKIKMWLEIEI 173 (357)
T ss_pred CCCCEEEECCCCCCcchHHHHHHHHhhhhhhhhcCCCCCceEEeeCC----CCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 368899999888777 446666654 677998733 467888888899999999999998721 0
Q ss_pred ecc--c-cc-----c---ccCCCcChHHHhHHHHHHHh-----CCcEEeecccccCCCCH----HHHHHHHHHHHHH
Q 010211 372 TNM--L-ES-----M---IDHPTPTRAEVSDIAIAVRE-----GADAVMLSGETAHGKFP----LKAVKVMHTVALR 428 (515)
Q Consensus 372 Tqm--L-eS-----M---i~~~~PtrAEv~DvanaV~~-----G~D~vmLs~ETa~G~yP----veaV~~m~~I~~~ 428 (515)
.++ - +. + ..-..| .+...|+.. |+|++..+--|+.|.|+ ---...|.+|-.+
T Consensus 174 G~vgG~Ed~~~~~~~~~~~~yTdP-----eeA~~Fv~~t~~~TgvD~LAvAiGT~HG~Yk~~~p~Ld~d~L~~I~~~ 245 (357)
T TIGR01520 174 GITGGEEDGVDNSHMDAEALYTQP-----EDVYYAYEELSKISPNFSIAAAFGNVHGVYKPGNVKLTPDILADGQEY 245 (357)
T ss_pred cccCCccCCcccccccccccCCCH-----HHHHHHHHHhccCCCcceeeeeeccccCCcCCCCCccCHHHHHHHHHH
Confidence 111 0 10 0 001122 234455542 89999999999999993 3445566666443
No 462
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=31.67 E-value=6.6e+02 Score=26.75 Aligned_cols=159 Identities=17% Similarity=0.077 Sum_probs=0.0
Q ss_pred CccCCCCCCHhhHHHhhcchhc-CCcEEEecccCCHH--------HHHHHHHHHHhcCC--CceEEEEec-ChhhhhcHH
Q 010211 258 KSANLPSITDKDWEDIKFGVDN-QVDFYAVSFVKDAK--------VVHELKDYLKSCNA--DIHVIVKIE-SADSIPNLH 325 (515)
Q Consensus 258 ~~~~lp~ltekD~~dI~~al~~-gvD~ValSfVrsa~--------dv~~vr~~l~~~~~--~i~IIaKIE-t~~aveNld 325 (515)
..+..+.+...+.+++..+++. ++|.+.+..-.-.+ ++..+.+.++..-+ +++|++|+= +....+...
T Consensus 125 aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~ 204 (352)
T PRK05437 125 ANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPVIVKEVGFGISKETAK 204 (352)
T ss_pred eecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHH
Q ss_pred HHHhh-cCeeEE----c---------CC------cccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcC
Q 010211 326 SIISA-SDGAMV----A---------RG------DLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPT 385 (515)
Q Consensus 326 eIl~~-sDgImI----g---------rg------DLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~Pt 385 (515)
.+.+. +|+|-| | |+ +.-.+.|++ ......++.+.. .+.|++. ..+.-+
T Consensus 205 ~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~p-t~~~l~~i~~~~--~~ipvia---------~GGI~~ 272 (352)
T PRK05437 205 RLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIP-TAQSLLEARSLL--PDLPIIA---------SGGIRN 272 (352)
T ss_pred HHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCC-HHHHHHHHHHhc--CCCeEEE---------ECCCCC
Q ss_pred hHHHhHHHHHHHhCCcEEeeccc---ccCCCCHHHHHHHHHHHHHHHhc
Q 010211 386 RAEVSDIAIAVREGADAVMLSGE---TAHGKFPLKAVKVMHTVALRTES 431 (515)
Q Consensus 386 rAEv~DvanaV~~G~D~vmLs~E---Ta~G~yPveaV~~m~~I~~~aE~ 431 (515)
-.|+..++..|+|++++..- .....=+...++++..+..+...
T Consensus 273 ---~~dv~k~l~~GAd~v~ig~~~l~~~~~~g~~~v~~~i~~~~~eL~~ 318 (352)
T PRK05437 273 ---GLDIAKALALGADAVGMAGPFLKAALEGGEEAVIELIEQWIEELKI 318 (352)
T ss_pred ---HHHHHHHHHcCCCEEEEhHHHHHHHHhccHHHHHHHHHHHHHHHHH
No 463
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=31.55 E-value=4.3e+02 Score=26.65 Aligned_cols=88 Identities=15% Similarity=0.131 Sum_probs=55.0
Q ss_pred HHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEecccc
Q 010211 298 LKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLE 376 (515)
Q Consensus 298 vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLe 376 (515)
+++-|.+...-..++.++=++..+ +-+... .|.|+|- | |=+..+...++. ++.+++..|..+++
T Consensus 3 lk~~l~~g~~~~g~~~~~~~p~~~---e~~~~~g~D~v~iD---l--EH~~~~~~~~~~-~~~a~~~~g~~~~V------ 67 (249)
T TIGR02311 3 FKQALKEGQPQIGLWLGLADPYAA---EICAGAGFDWLLID---G--EHAPNDVRTILS-QLQALAPYPSSPVV------ 67 (249)
T ss_pred HHHHHHCCCceEEEEEeCCCcHHH---HHHHhcCCCEEEEe---c--cCCCCCHHHHHH-HHHHHHhcCCCcEE------
Confidence 455555422223455555555443 223333 8999994 2 323335555555 78899888988887
Q ss_pred ccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 377 SMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 377 SMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
.-+.++.. ++..++..|+|+||+-
T Consensus 68 ---Rv~~~~~~---~i~~~Ld~Ga~gIivP 91 (249)
T TIGR02311 68 ---RPAIGDPV---LIKQLLDIGAQTLLVP 91 (249)
T ss_pred ---ECCCCCHH---HHHHHhCCCCCEEEec
Confidence 44555544 6778899999999984
No 464
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=31.54 E-value=5.7e+02 Score=26.03 Aligned_cols=152 Identities=14% Similarity=0.051 Sum_probs=86.9
Q ss_pred CCHhhHHHhhc-chhcCCcEEEeccc---------CCHHHHHHHHHHHHhcCCCceE--EEEecChhh--------hh-c
Q 010211 265 ITDKDWEDIKF-GVDNQVDFYAVSFV---------KDAKVVHELKDYLKSCNADIHV--IVKIESADS--------IP-N 323 (515)
Q Consensus 265 ltekD~~dI~~-al~~gvD~ValSfV---------rsa~dv~~vr~~l~~~~~~i~I--IaKIEt~~a--------ve-N 323 (515)
++..++..+.. -.+.|+|.|=+.+- .+.++...++...+. ..+..+ ++.-.+.-+ .+ .
T Consensus 18 ~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~-~~~~~l~~~~r~~~~~~~~~~p~~~~~~d 96 (275)
T cd07937 18 MRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKA-MPNTPLQMLLRGQNLVGYRHYPDDVVELF 96 (275)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHh-CCCCceehhcccccccCccCCCcHHHHHH
Confidence 46666655543 34679998855441 244555555444332 223333 333222122 11 1
Q ss_pred HHHHHhh-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHH-HHHhCCc
Q 010211 324 LHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREGAD 401 (515)
Q Consensus 324 ldeIl~~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~Dvan-aV~~G~D 401 (515)
++...+. .|.|-|. .+..++ ...+..++.++++|+-+..+ .+|...+..+...+.+.+. +...|+|
T Consensus 97 i~~~~~~g~~~iri~-------~~~~~~-~~~~~~i~~ak~~G~~v~~~----i~~~~~~~~~~~~~~~~~~~~~~~Ga~ 164 (275)
T cd07937 97 VEKAAKNGIDIFRIF-------DALNDV-RNLEVAIKAVKKAGKHVEGA----ICYTGSPVHTLEYYVKLAKELEDMGAD 164 (275)
T ss_pred HHHHHHcCCCEEEEe-------ecCChH-HHHHHHHHHHHHCCCeEEEE----EEecCCCCCCHHHHHHHHHHHHHcCCC
Confidence 2222222 5766653 333343 45567788889999876642 1333445666666666544 4556999
Q ss_pred EEeecccccCCCCHHHHHHHHHHHHHHHh
Q 010211 402 AVMLSGETAHGKFPLKAVKVMHTVALRTE 430 (515)
Q Consensus 402 ~vmLs~ETa~G~yPveaV~~m~~I~~~aE 430 (515)
.+.|. +|.=.-.|.+.-+.+..+.++..
T Consensus 165 ~i~l~-DT~G~~~P~~v~~lv~~l~~~~~ 192 (275)
T cd07937 165 SICIK-DMAGLLTPYAAYELVKALKKEVG 192 (275)
T ss_pred EEEEc-CCCCCCCHHHHHHHHHHHHHhCC
Confidence 99996 88877889998888888876653
No 465
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=31.54 E-value=4.6e+02 Score=24.98 Aligned_cols=104 Identities=12% Similarity=0.039 Sum_probs=57.6
Q ss_pred HHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh----cCeeEEcCCcccccC
Q 010211 270 WEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLGAEL 345 (515)
Q Consensus 270 ~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~----sDgImIgrgDLg~el 345 (515)
.++++.+++.|+|++..+- +-.+ +.++.+.. ...+++ |+.+++|+... +|.|.+-+.+. .
T Consensus 66 ~~~~~~a~~~Ga~~i~~p~--~~~~---~~~~~~~~--~~~~i~------gv~t~~e~~~A~~~Gad~i~~~p~~~---~ 129 (190)
T cd00452 66 PEQADAAIAAGAQFIVSPG--LDPE---VVKAANRA--GIPLLP------GVATPTEIMQALELGADIVKLFPAEA---V 129 (190)
T ss_pred HHHHHHHHHcCCCEEEcCC--CCHH---HHHHHHHc--CCcEEC------CcCCHHHHHHHHHCCCCEEEEcCCcc---c
Confidence 3456667788999997663 2223 33333332 345554 44466666554 79998865321 1
Q ss_pred CCCCHHHHHHHHHHHHHhc-CCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccc
Q 010211 346 PIEDVPLLQEDIIRRCRSM-QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGET 409 (515)
Q Consensus 346 g~e~v~~aqk~Ii~~c~~a-GKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ET 409 (515)
| +...+.+ +... +.|++.. .+. +. ..+..+...|+|++.+++..
T Consensus 130 g----~~~~~~l---~~~~~~~p~~a~---------GGI-~~---~n~~~~~~~G~~~v~v~s~i 174 (190)
T cd00452 130 G----PAYIKAL---KGPFPQVRFMPT---------GGV-SL---DNAAEWLAAGVVAVGGGSLL 174 (190)
T ss_pred C----HHHHHHH---HhhCCCCeEEEe---------CCC-CH---HHHHHHHHCCCEEEEEchhc
Confidence 2 2233333 2222 3676652 222 32 34557888899999987443
No 466
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=31.50 E-value=2.9e+02 Score=26.77 Aligned_cols=76 Identities=18% Similarity=0.178 Sum_probs=44.9
Q ss_pred cCeeEEcCCcccccC-CCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccc
Q 010211 331 SDGAMVARGDLGAEL-PIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGET 409 (515)
Q Consensus 331 sDgImIgrgDLg~el-g~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ET 409 (515)
+|.+.|. ||.... +.+.-....+++ ++..+.|+.+. .+.-+ ..|+..++..|+|.+++.
T Consensus 43 ~d~l~v~--dl~~~~~~~~~~~~~i~~i---~~~~~~pv~~~---------GgI~~---~e~~~~~~~~Gad~vvig--- 102 (234)
T cd04732 43 AKWLHVV--DLDGAKGGEPVNLELIEEI---VKAVGIPVQVG---------GGIRS---LEDIERLLDLGVSRVIIG--- 102 (234)
T ss_pred CCEEEEE--CCCccccCCCCCHHHHHHH---HHhcCCCEEEe---------CCcCC---HHHHHHHHHcCCCEEEEC---
Confidence 5667775 655432 233334444444 34447999884 33333 234456677899999864
Q ss_pred cCCCCHHHHHHHHHHHHHHH
Q 010211 410 AHGKFPLKAVKVMHTVALRT 429 (515)
Q Consensus 410 a~G~yPveaV~~m~~I~~~a 429 (515)
..+++--+++.++.++.
T Consensus 103 ---s~~l~dp~~~~~i~~~~ 119 (234)
T cd04732 103 ---TAAVKNPELVKELLKEY 119 (234)
T ss_pred ---chHHhChHHHHHHHHHc
Confidence 44555566677777665
No 467
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=31.32 E-value=2.6e+02 Score=27.89 Aligned_cols=99 Identities=11% Similarity=0.186 Sum_probs=59.5
Q ss_pred HHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEe-------cChhhhhcHHHH--HhhcCeeEEcCCcc
Q 010211 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKI-------ESADSIPNLHSI--ISASDGAMVARGDL 341 (515)
Q Consensus 271 ~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKI-------Et~~aveNldeI--l~~sDgImIgrgDL 341 (515)
+.+..+.+.|+..++.. -.+.++...+.++.++.+..+....=| .+.+-.+.++++ +.....+.|| .-
T Consensus 18 ~~~~~~~~~g~~~~i~~-~~~~~~~~~~~~~~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~l~~~~~~~~~aIG--Ei 94 (255)
T PF01026_consen 18 EVLERAREAGVSAIIIV-STDPEDWERVLELASQYPDRVYPALGIHPWEAHEVNEEDLEELEELINLNRPKVVAIG--EI 94 (255)
T ss_dssp HHHHHHHHTTEEEEEEE-ESSHHHHHHHHHHHHHTTTEEEEEE---GGGGGGHSHHHHHHHHHHHHHTSTTEEEEE--EE
T ss_pred HHHHHHHHcCCCEEEEc-CCCHHHhHHHHHHHhcCCCeEEEEecCCcchhhhhhHHHHHHHHHHHHhccccceeee--ee
Confidence 55567778899877543 256678777777766633333333322 244455667777 4335566664 44
Q ss_pred cccCCC--CCHHHHH----HHHHHHHHhcCCcEEEEe
Q 010211 342 GAELPI--EDVPLLQ----EDIIRRCRSMQKPVIVAT 372 (515)
Q Consensus 342 g~elg~--e~v~~aq----k~Ii~~c~~aGKPvivAT 372 (515)
|.+... +.-...| ++.++.|++.++||++.|
T Consensus 95 GLD~~~~~~~~~~~Q~~vF~~ql~lA~~~~~pv~iH~ 131 (255)
T PF01026_consen 95 GLDYYWRNEEDKEVQEEVFERQLELAKELNLPVSIHC 131 (255)
T ss_dssp EEETTTTSSSGHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred ccCcccccCCcHHHHHHHHHHHHHHHHHhCCcEEEec
Confidence 444421 2334455 556778999999999965
No 468
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=31.20 E-value=2.6e+02 Score=22.98 Aligned_cols=73 Identities=15% Similarity=0.206 Sum_probs=37.5
Q ss_pred cEEEecCCEEEEEeec-CCCCcceEEecccccccccCcCCEEEEeCCeeEE-EEE-----EEeCCeEEEEEeeC--cEec
Q 010211 178 PIILKEGQEFNFTIKR-GVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSL-AVK-----SKTKDLVKCIVVDG--GELK 248 (515)
Q Consensus 178 ~i~L~~G~~v~lt~~~-~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l-~V~-----~~~~~~v~~~V~~g--G~L~ 248 (515)
...+.+|+.++|...- +.-.....|.-....+..-..+....+.+|.+.+ .+. ..+.+...|.+.|+ |.+.
T Consensus 8 ~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~ 87 (95)
T cd05722 8 DIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIV 87 (95)
T ss_pred CeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEE
Confidence 4566789999887652 1112223333222222211112244456665443 332 22445689999998 7776
Q ss_pred cC
Q 010211 249 SR 250 (515)
Q Consensus 249 s~ 250 (515)
++
T Consensus 88 s~ 89 (95)
T cd05722 88 SR 89 (95)
T ss_pred Ee
Confidence 55
No 469
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=31.11 E-value=6.8e+02 Score=26.73 Aligned_cols=23 Identities=9% Similarity=0.138 Sum_probs=17.4
Q ss_pred CCCHhhHHHh--------hcchhcCCcEEEe
Q 010211 264 SITDKDWEDI--------KFGVDNQVDFYAV 286 (515)
Q Consensus 264 ~ltekD~~dI--------~~al~~gvD~Val 286 (515)
.+|.+|++.| +.|.+.|+|+|=+
T Consensus 148 ~mt~~eI~~ii~~f~~AA~rA~~AGfDGVEI 178 (362)
T PRK10605 148 ALELEEIPGIVNDFRQAIANAREAGFDLVEL 178 (362)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 5788888776 3456789999865
No 470
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=31.04 E-value=5.4e+02 Score=27.14 Aligned_cols=23 Identities=9% Similarity=0.221 Sum_probs=16.5
Q ss_pred CCCHhhHHHh--------hcchhcCCcEEEe
Q 010211 264 SITDKDWEDI--------KFGVDNQVDFYAV 286 (515)
Q Consensus 264 ~ltekD~~dI--------~~al~~gvD~Val 286 (515)
.+|+.|++.+ +.+.+.|+|+|=+
T Consensus 126 ~mt~~eI~~i~~~f~~aA~~a~~aGfDgVei 156 (353)
T cd02930 126 ELSEEEIEQTIEDFARCAALAREAGYDGVEI 156 (353)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 5788888666 2346689999855
No 471
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=30.96 E-value=1.1e+02 Score=32.35 Aligned_cols=65 Identities=15% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHhhcchhcCCcEEEecccCCH---------------HHHHHHHHHHHhcCCCceEEE--EecChhhhhcHHHHHhhcC
Q 010211 270 WEDIKFGVDNQVDFYAVSFVKDA---------------KVVHELKDYLKSCNADIHVIV--KIESADSIPNLHSIISASD 332 (515)
Q Consensus 270 ~~dI~~al~~gvD~ValSfVrsa---------------~dv~~vr~~l~~~~~~i~IIa--KIEt~~aveNldeIl~~sD 332 (515)
.+.++...+.|+|++.+. -|++ .++..++ .+.+...++.||+ -|-| .+.+.++++.+|
T Consensus 154 ~~~~~~l~~aG~d~i~vh-~Rt~~~~g~~~~~~~~~~~~~~~~i~-~v~~~~~~iPVI~nGgI~s---~eda~~~l~~aD 228 (333)
T PRK11815 154 CDFVDTVAEAGCDTFIVH-ARKAWLKGLSPKENREIPPLDYDRVY-RLKRDFPHLTIEINGGIKT---LEEAKEHLQHVD 228 (333)
T ss_pred HHHHHHHHHhCCCEEEEc-CCchhhcCCCccccccCCCcCHHHHH-HHHHhCCCCeEEEECCcCC---HHHHHHHHhcCC
Q ss_pred eeEEcCC
Q 010211 333 GAMVARG 339 (515)
Q Consensus 333 gImIgrg 339 (515)
|||||||
T Consensus 229 gVmIGRa 235 (333)
T PRK11815 229 GVMIGRA 235 (333)
T ss_pred EEEEcHH
No 472
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=30.94 E-value=7e+02 Score=27.40 Aligned_cols=151 Identities=14% Similarity=0.067 Sum_probs=92.2
Q ss_pred HhhHHHhhcchhc--CCcEEEecccCCHH-HHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh--c--CeeEEcCC
Q 010211 267 DKDWEDIKFGVDN--QVDFYAVSFVKDAK-VVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA--S--DGAMVARG 339 (515)
Q Consensus 267 ekD~~dI~~al~~--gvD~ValSfVrsa~-dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~--s--DgImIgrg 339 (515)
++|.+-++.+++. |-+-+..| -+.+ ++.++-....+.|..+.+.+- -.......+..-+.. . +-|++.|+
T Consensus 200 ~kD~eVLeaaLe~~~G~kpLL~S--At~e~Ny~~ia~lAk~yg~~Vvv~s~-~Din~ak~Ln~kL~~~Gv~~eDIVlDP~ 276 (389)
T TIGR00381 200 EKDPLVLEKAAEVAEGERCLLAS--ANLDLDYEKIANAAKKYGHVVLSWTI-MDINMQKTLNRYLLKRGLMPRDIVMDPT 276 (389)
T ss_pred cCCHHHHHHHHHHhCCCCcEEEe--cCchhhHHHHHHHHHHhCCeEEEEcC-CcHHHHHHHHHHHHHcCCCHHHEEEcCC
Confidence 6788888777663 43444444 3445 676666666554443333332 334444455444443 2 26788888
Q ss_pred cccccCCCCCHHHHHHHHHHHHHh----cCCcEEEEeccccc-------cccCCCcCh------HHHhHHHHHHHhCCcE
Q 010211 340 DLGAELPIEDVPLLQEDIIRRCRS----MQKPVIVATNMLES-------MIDHPTPTR------AEVSDIAIAVREGADA 402 (515)
Q Consensus 340 DLg~elg~e~v~~aqk~Ii~~c~~----aGKPvivATqmLeS-------Mi~~~~Ptr------AEv~DvanaV~~G~D~ 402 (515)
=+.+..|++.....+.+|=+++-+ .|-|+|+.+ -|. |...+--.+ -|+.-....+..|+|.
T Consensus 277 t~alG~Gieya~s~~erIRraALkgD~~L~~Pii~~~--~~~w~~kEa~~~~~~wG~~~~Rg~lwE~~ta~~~~~aG~di 354 (389)
T TIGR00381 277 TCALGYGIEFSITNMERIRLSGLKGDTDLNMPMSSGT--TNAWGAREAWMVDSEWGPREYRGPLWEIITGLTMMLAGVDL 354 (389)
T ss_pred CccccCCHHHHHHHHHHHHHHHhcCCcCCCCCeeccc--hhhhhheeeccCCCCCCChHHhchhhhHHHHHHHHHcCCcE
Confidence 888888888877777777777655 455766544 221 110000111 2355667888999999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHHHHh
Q 010211 403 VMLSGETAHGKFPLKAVKVMHTVALRTE 430 (515)
Q Consensus 403 vmLs~ETa~G~yPveaV~~m~~I~~~aE 430 (515)
+|+ .|| ++|++++++....=
T Consensus 355 ~~m-------~HP-~sv~~~k~~~~~l~ 374 (389)
T TIGR00381 355 FMM-------LHP-VSVAVLKEIGNTLT 374 (389)
T ss_pred EEE-------eCH-HHHHHHHHHHHHHh
Confidence 999 488 89999998876543
No 473
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=30.77 E-value=4e+02 Score=28.70 Aligned_cols=122 Identities=15% Similarity=0.132 Sum_probs=78.4
Q ss_pred CceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcc---cccCCCCCHHHHHHHHHHHHHhcCCcEEE-Eecc--cc----
Q 010211 308 DIHVIVKIESADSIPNLHSIISA-SDGAMVARGDL---GAELPIEDVPLLQEDIIRRCRSMQKPVIV-ATNM--LE---- 376 (515)
Q Consensus 308 ~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDL---g~elg~e~v~~aqk~Ii~~c~~aGKPviv-ATqm--Le---- 376 (515)
.+.|...+......+.+.+-+.. .+.|||.-..| -..+++++=...-+++++.|+.+|.+|=- -.++ .|
T Consensus 75 ~VPValHLDHg~~~e~i~~ai~~GftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaELG~vgg~e~~~~ 154 (347)
T PRK09196 75 HIPVVMHQDHGNSPATCQRAIQLGFTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGCLGSLETGMG 154 (347)
T ss_pred CCcEEEECCCCCCHHHHHHHHHcCCCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccc
Confidence 47899999998777766665555 78999975554 22347888888999999999999998721 0001 00
Q ss_pred ----ccccCC----CcChHHHhHHHHHHH-hCCcEEeecccccCCCCHH--------HHHHHHHHHHHHH
Q 010211 377 ----SMIDHP----TPTRAEVSDIAIAVR-EGADAVMLSGETAHGKFPL--------KAVKVMHTVALRT 429 (515)
Q Consensus 377 ----SMi~~~----~PtrAEv~DvanaV~-~G~D~vmLs~ETa~G~yPv--------eaV~~m~~I~~~a 429 (515)
...... .-......+...|+. -|+|++-.+--|+.|.|+- --...+.+|-.+.
T Consensus 155 g~~~~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v 224 (347)
T PRK09196 155 GEEDGHGAEGKLSHDQLLTDPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARL 224 (347)
T ss_pred ccccCcccccccchhhcCCCHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcC
Confidence 000000 000111234557775 5999999999999999952 3344566665544
No 474
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=30.75 E-value=1.5e+02 Score=30.88 Aligned_cols=62 Identities=15% Similarity=0.201 Sum_probs=38.9
Q ss_pred EEecCCCCCCHHHHHHHHHhCCcEEEEecC-----------CCChHHHHHHHHHHHHHHhhcCCceEEEEEecCCC
Q 010211 104 VCTIGPSTSSREMIWKLAEEGMNVARLNMS-----------HGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGP 168 (515)
Q Consensus 104 i~TiGPss~~~e~i~~li~aGm~v~RiN~S-----------Hg~~e~~~~~i~~ir~~~~~~~~~~i~I~lDL~GP 168 (515)
+.|+ |-.-++|..++|.++|+|+.=.++- .-+.++..+.++.+.++..+.+ ..+-+|.- -||
T Consensus 151 l~T~-~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~-~dii~l~h-GGP 223 (268)
T PF09370_consen 151 LFTT-AYVFNEEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVN-PDIIVLCH-GGP 223 (268)
T ss_dssp -EE---EE-SHHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC--TT-EEEEE-CTT
T ss_pred Ceee-eeecCHHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhC-CCeEEEEe-CCC
Confidence 4555 5567899999999999999999882 2245778888888888887776 33433333 555
No 475
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=30.68 E-value=1.4e+02 Score=31.89 Aligned_cols=92 Identities=15% Similarity=0.130 Sum_probs=52.7
Q ss_pred HHhhcchhcCCcEEEeccc------CCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh----cCeeEEcCCc
Q 010211 271 EDIKFGVDNQVDFYAVSFV------KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGD 340 (515)
Q Consensus 271 ~dI~~al~~gvD~ValSfV------rsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~----sDgImIgrgD 340 (515)
+|.+.+.+.|+|+|.+|-- .....+..+.+..+..+.++.||+- -||.+-.+|++. +|++||||.=
T Consensus 233 ~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~d----GGIr~g~Di~kaLalGA~~V~iGr~~ 308 (351)
T cd04737 233 EDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFD----SGVRRGEHVFKALASGADAVAVGRPV 308 (351)
T ss_pred HHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEE----CCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 5566777899999999621 1222344455544444456777762 366666666665 8999999965
Q ss_pred ccc--cCCCCC----HHHHHHHHHHHHHhcCC
Q 010211 341 LGA--ELPIED----VPLLQEDIIRRCRSMQK 366 (515)
Q Consensus 341 Lg~--elg~e~----v~~aqk~Ii~~c~~aGK 366 (515)
|-. .-|-+. +..+++++...-...|.
T Consensus 309 l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~ 340 (351)
T cd04737 309 LYGLALGGAQGVASVLEHLNKELKIVMQLAGT 340 (351)
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 421 112222 33444555555555553
No 476
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=30.59 E-value=3.9e+02 Score=28.83 Aligned_cols=96 Identities=18% Similarity=0.089 Sum_probs=56.2
Q ss_pred hhhcHHHHHhh-----cCeeEEcCCcccc-cCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHH
Q 010211 320 SIPNLHSIISA-----SDGAMVARGDLGA-ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIA 393 (515)
Q Consensus 320 aveNldeIl~~-----sDgImIgrgDLg~-elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~Dva 393 (515)
|++|++.+++. +|+++.-+|=|.. ..+ -...+|.|+--.-=.++.....+...-+.++-
T Consensus 89 gl~dp~~~i~~a~~~g~dAv~~~~G~l~~~~~~---------------~~~~iplIlkln~~t~l~~~~~~~~~l~~sVe 153 (348)
T PRK09250 89 LYFDPENIVKLAIEAGCNAVASTLGVLEAVARK---------------YAHKIPFILKLNHNELLSYPNTYDQALTASVE 153 (348)
T ss_pred cccCHHHHHHHHHhcCCCEEEeCHHHHHhcccc---------------ccCCCCEEEEeCCCCCCCCCCCCcccceecHH
Confidence 77777776664 6888876443322 111 12347777742211122111223344477889
Q ss_pred HHHHhCCcEEeecccccCCC-CHHHHHHHHHHHHHHHhcC
Q 010211 394 IAVREGADAVMLSGETAHGK-FPLKAVKVMHTVALRTESS 432 (515)
Q Consensus 394 naV~~G~D~vmLs~ETa~G~-yPveaV~~m~~I~~~aE~~ 432 (515)
.|+..|+|+|..+- -.|. +=-+.++.+.+|+.+++++
T Consensus 154 dAlrLGAdAV~~tv--y~Gs~~E~~ml~~l~~i~~ea~~~ 191 (348)
T PRK09250 154 DALRLGAVAVGATI--YFGSEESRRQIEEISEAFEEAHEL 191 (348)
T ss_pred HHHHCCCCEEEEEE--ecCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998752 2332 3346677778888888865
No 477
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=30.56 E-value=90 Score=32.70 Aligned_cols=63 Identities=16% Similarity=0.162 Sum_probs=37.3
Q ss_pred hcchhcCCcEEEecccCCHH--------HHHHHHHHHHhcCCCceEEE--EecChhhhhcHHHHHhh--cCeeEEcCCcc
Q 010211 274 KFGVDNQVDFYAVSFVKDAK--------VVHELKDYLKSCNADIHVIV--KIESADSIPNLHSIISA--SDGAMVARGDL 341 (515)
Q Consensus 274 ~~al~~gvD~ValSfVrsa~--------dv~~vr~~l~~~~~~i~IIa--KIEt~~aveNldeIl~~--sDgImIgrgDL 341 (515)
+...+.|+|+|.+. -|+.. ++..+++.-+. -+++||+ -|.|+ +..+++++. +||||||||=|
T Consensus 155 ~~l~~~Gvd~i~Vh-~Rt~~~~y~g~~~~~~~i~~ik~~--~~iPVi~nGdI~t~---~da~~~l~~~g~DgVmiGRg~l 228 (312)
T PRK10550 155 DAVQQAGATELVVH-GRTKEDGYRAEHINWQAIGEIRQR--LTIPVIANGEIWDW---QSAQQCMAITGCDAVMIGRGAL 228 (312)
T ss_pred HHHHhcCCCEEEEC-CCCCccCCCCCcccHHHHHHHHhh--cCCcEEEeCCcCCH---HHHHHHHhccCCCEEEEcHHhH
Confidence 44457899999885 23332 33333333222 2467776 56655 344555544 89999999955
Q ss_pred c
Q 010211 342 G 342 (515)
Q Consensus 342 g 342 (515)
+
T Consensus 229 ~ 229 (312)
T PRK10550 229 N 229 (312)
T ss_pred h
Confidence 3
No 478
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=30.35 E-value=2.2e+02 Score=29.26 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=34.0
Q ss_pred HhHHHHHHHhCCcEEeecccccC---CCCHHHHHHHHHHHHHHHhcCC
Q 010211 389 VSDIAIAVREGADAVMLSGETAH---GKFPLKAVKVMHTVALRTESSL 433 (515)
Q Consensus 389 v~DvanaV~~G~D~vmLs~ETa~---G~yPveaV~~m~~I~~~aE~~~ 433 (515)
+.|.-.....|+|++|+.++.-. ..-+-|.+..|..|+.+.-+.+
T Consensus 32 ~~ea~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~~~ 79 (254)
T PF03437_consen 32 VREAEALEEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRREV 79 (254)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHHhC
Confidence 66677788899999999865321 1124599999999999887665
No 479
>PRK07877 hypothetical protein; Provisional
Probab=30.17 E-value=1.9e+02 Score=34.06 Aligned_cols=66 Identities=14% Similarity=0.109 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEe
Q 010211 296 HELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVAT 372 (515)
Q Consensus 296 ~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivAT 372 (515)
..+++.+.+.|.++.|.+.-|... -+|++++++-+|.|+=+- .. +..--.+-++|.++|+|++.++
T Consensus 163 ~~a~~~l~~inp~i~v~~~~~~i~-~~n~~~~l~~~DlVvD~~---------D~-~~~R~~ln~~a~~~~iP~i~~~ 228 (722)
T PRK07877 163 VVAARRIAELDPYLPVEVFTDGLT-EDNVDAFLDGLDVVVEEC---------DS-LDVKVLLREAARARRIPVLMAT 228 (722)
T ss_pred HHHHHHHHHHCCCCEEEEEeccCC-HHHHHHHhcCCCEEEECC---------CC-HHHHHHHHHHHHHcCCCEEEEc
Confidence 345677888899999888888766 489999988788776542 22 3455567788999999999987
No 480
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=30.10 E-value=95 Score=28.10 Aligned_cols=53 Identities=13% Similarity=0.223 Sum_probs=36.0
Q ss_pred hhhcHHHHHhh--cC--eeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEe
Q 010211 320 SIPNLHSIISA--SD--GAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVAT 372 (515)
Q Consensus 320 aveNldeIl~~--sD--gImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivAT 372 (515)
+++++++.++. .| .|++|-.|+.-..+.++...-.+++++++++.+.++++.+
T Consensus 52 ~~~~l~~~~~~~~pd~v~i~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~~ 108 (177)
T cd01822 52 GLARLPALLAQHKPDLVILELGGNDGLRGIPPDQTRANLRQMIETAQARGAPVLLVG 108 (177)
T ss_pred HHHHHHHHHHhcCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 33444444432 34 4455667776555667788888999999999999988754
No 481
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=29.99 E-value=3.7e+02 Score=28.17 Aligned_cols=126 Identities=18% Similarity=0.183 Sum_probs=66.9
Q ss_pred cCCCCCCHh-hHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEe---cChhhhhc-HHHHHhh--cC
Q 010211 260 ANLPSITDK-DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKI---ESADSIPN-LHSIISA--SD 332 (515)
Q Consensus 260 ~~lp~ltek-D~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKI---Et~~aveN-ldeIl~~--sD 332 (515)
+.+|-+||- |.++++.+.++ +|.+-++ .+...+..-++. +++.+ -.|..|= -+++-..+ .+-|.+. -+
T Consensus 86 ~GlpvvTeV~~~~~~~~~ae~-vDilQIg-Ar~~rntdLL~a-~~~t~--kpV~lKrGqf~s~~e~~~aae~i~~~Gn~~ 160 (281)
T PRK12457 86 FGVPVITDVHEVEQAAPVAEV-ADVLQVP-AFLARQTDLVVA-IAKTG--KPVNIKKPQFMSPTQMKHVVSKCREAGNDR 160 (281)
T ss_pred HCCceEEEeCCHHHHHHHhhh-CeEEeeC-chhhchHHHHHH-HhccC--CeEEecCCCcCCHHHHHHHHHHHHHcCCCe
Confidence 456666653 34677777676 8998887 355555422322 22222 2333331 12222222 2333333 46
Q ss_pred eeEEcCCcccccCCCCCHHHHHHHHHHHHHh-cCCcEEEEeccccccccCCCcChH---------------H-HhHH-HH
Q 010211 333 GAMVARGDLGAELPIEDVPLLQEDIIRRCRS-MQKPVIVATNMLESMIDHPTPTRA---------------E-VSDI-AI 394 (515)
Q Consensus 333 gImIgrgDLg~elg~e~v~~aqk~Ii~~c~~-aGKPvivATqmLeSMi~~~~PtrA---------------E-v~Dv-an 394 (515)
.++.-||= ..|+.+...-..-|...-+. -+-|||+ +||.+ | +... --
T Consensus 161 vilcERG~---~fgy~~~~~D~~~ip~mk~~~t~lPVi~------------DpSHsvq~p~~~g~~s~G~re~v~~larA 225 (281)
T PRK12457 161 VILCERGS---SFGYDNLVVDMLGFRQMKRTTGDLPVIF------------DVTHSLQCRDPLGAASGGRRRQVLDLARA 225 (281)
T ss_pred EEEEeCCC---CCCCCCcccchHHHHHHHhhCCCCCEEE------------eCCccccCCCCCCCCCCCCHHHHHHHHHH
Confidence 77777884 24776554444444433332 3999987 33332 2 3333 35
Q ss_pred HHHhCCcEEee
Q 010211 395 AVREGADAVML 405 (515)
Q Consensus 395 aV~~G~D~vmL 405 (515)
++..|+|++|+
T Consensus 226 AvA~GaDGl~i 236 (281)
T PRK12457 226 GMAVGLAGLFL 236 (281)
T ss_pred HHHhCCCEEEE
Confidence 68899999998
No 482
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=29.94 E-value=2.7e+02 Score=26.86 Aligned_cols=41 Identities=27% Similarity=0.391 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEee
Q 010211 352 LLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 405 (515)
Q Consensus 352 ~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmL 405 (515)
.+.+..++.++++|++|.+-| .+ .|. ....++..|+|+++-
T Consensus 177 ~~~~~~v~~~~~~G~~v~~wt-------vn-~~~-----~~~~~~~~Gvd~i~T 217 (220)
T cd08579 177 TLNKEFIRQAHQNGKKVYVWT-------VN-DPD-----DMQRYLAMGVDGIIT 217 (220)
T ss_pred hcCHHHHHHHHHCCCEEEEEc-------CC-CHH-----HHHHHHHcCCCEEeC
Confidence 345789999999999999876 21 222 335778889999863
No 483
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=29.83 E-value=3e+02 Score=27.49 Aligned_cols=100 Identities=13% Similarity=0.103 Sum_probs=54.1
Q ss_pred HHhhcchhcCCcEEEecccC---------CHHHHHHHHHHHHhc-CCCceEEEE----e------cChhhhhcHHHHHhh
Q 010211 271 EDIKFGVDNQVDFYAVSFVK---------DAKVVHELKDYLKSC-NADIHVIVK----I------ESADSIPNLHSIISA 330 (515)
Q Consensus 271 ~dI~~al~~gvD~ValSfVr---------sa~dv~~vr~~l~~~-~~~i~IIaK----I------Et~~aveNldeIl~~ 330 (515)
+.++++.+.|.|+|-+.+-. +.+++.++++.+.+. +..+.+.+- . +...+++.+...++.
T Consensus 14 ~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~ 93 (279)
T cd00019 14 NALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIERLKDEIER 93 (279)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHHHHHHHHHHHH
Confidence 55677888999998664311 447788888888776 333333221 1 122344555555544
Q ss_pred -----cCeeEEcCCcccc---cCCCCCHHHHHHHHHHHHHhcCCcEEE
Q 010211 331 -----SDGAMVARGDLGA---ELPIEDVPLLQEDIIRRCRSMQKPVIV 370 (515)
Q Consensus 331 -----sDgImIgrgDLg~---elg~e~v~~aqk~Ii~~c~~aGKPviv 370 (515)
++.+.+-+|-... +-.++.+....+++.+.+.+.|..+.+
T Consensus 94 A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~l 141 (279)
T cd00019 94 CEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIAL 141 (279)
T ss_pred HHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEE
Confidence 4666554443211 001123445556666666666766554
No 484
>PLN02535 glycolate oxidase
Probab=29.83 E-value=90 Score=33.65 Aligned_cols=68 Identities=16% Similarity=0.188 Sum_probs=42.8
Q ss_pred HHhhcchhcCCcEEEecccC------CHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh----cCeeEEcCCc
Q 010211 271 EDIKFGVDNQVDFYAVSFVK------DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGD 340 (515)
Q Consensus 271 ~dI~~al~~gvD~ValSfVr------sa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~----sDgImIgrgD 340 (515)
++.+.+.+.|+|+|.+|-.. ...-+..+.+..+..+.++.||+ --||.|-.+|++. +|+++|||.=
T Consensus 235 ~dA~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~----dGGIr~g~Dv~KALalGA~aV~vGr~~ 310 (364)
T PLN02535 235 EDAIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLL----DGGVRRGTDVFKALALGAQAVLVGRPV 310 (364)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEe----eCCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 44566778999999887321 11113334444333344577774 3477777787776 8999999876
Q ss_pred cc
Q 010211 341 LG 342 (515)
Q Consensus 341 Lg 342 (515)
|-
T Consensus 311 l~ 312 (364)
T PLN02535 311 IY 312 (364)
T ss_pred Hh
Confidence 63
No 485
>TIGR03425 urea_degr_2 urea carboxylase-associated protein 2. A number of bacteria degrade urea as a nitrogen source by the urea carboxylase/allophanate hydrolase pathway, which uses biotin and consumes ATP, rather than my means of the nickel-dependent enzyme urease. This model represents one of a pair of homologous, tandem uncharacterized genes found together with the urea carboxylase and allophanate hydrolase genes.
Probab=29.82 E-value=1.2e+02 Score=30.78 Aligned_cols=54 Identities=20% Similarity=0.265 Sum_probs=33.7
Q ss_pred cEEEecCCEEEEEeecCCCCcceEEecccccc--------------cccCcCCEEEEeCCeeEEEEEE
Q 010211 178 PIILKEGQEFNFTIKRGVSTEDTVSVNYDDFV--------------NDVEVGDILLVDGGMMSLAVKS 231 (515)
Q Consensus 178 ~i~L~~G~~v~lt~~~~~~~~~~i~v~~~~l~--------------~~v~~Gd~IliDDG~I~l~V~~ 231 (515)
...|++||.++|+.-.+.-.-+.+..+..+.. -.+++|+.++=|.|+..+.|++
T Consensus 14 s~~v~rGq~lri~d~~G~q~~d~~~~na~d~~Er~n~~dT~k~q~~~~l~~G~~L~Sd~gRpm~sIv~ 81 (233)
T TIGR03425 14 SKVLRRGTRLRLTDLEGGANVSLLLYNADAPLERYNMADTLKVQWTAYLTKGHVLLSDMGRVLASIVE 81 (233)
T ss_pred EEEECCCCEEEEEeCCCCeEeeeEEecCCCcccccCHHHHHHHhCCeeccCCCEeEeCCCcceEEEEc
Confidence 46788899998875432111112222221111 2467999999999999998876
No 486
>PRK08223 hypothetical protein; Validated
Probab=29.76 E-value=2.7e+02 Score=29.12 Aligned_cols=65 Identities=12% Similarity=0.179 Sum_probs=45.1
Q ss_pred HHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCCCCH-HHHHHHHHHHHHhcCCcEEEE
Q 010211 297 ELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDV-PLLQEDIIRRCRSMQKPVIVA 371 (515)
Q Consensus 297 ~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~e~v-~~aqk~Ii~~c~~aGKPvivA 371 (515)
.+++.+.+.|.++.|.+-=|.. .-+|++++++-.|.|+=+ .... ......+-++|+++|+|++.+
T Consensus 85 ~a~~~l~~iNP~v~V~~~~~~l-~~~n~~~ll~~~DlVvD~---------~D~~~~~~r~~ln~~c~~~~iP~V~~ 150 (287)
T PRK08223 85 VLAEMVRDINPELEIRAFPEGI-GKENADAFLDGVDVYVDG---------LDFFEFDARRLVFAACQQRGIPALTA 150 (287)
T ss_pred HHHHHHHHHCCCCEEEEEeccc-CccCHHHHHhCCCEEEEC---------CCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence 4566777778887776543333 246899999888877522 2222 346677888999999999886
No 487
>PLN02741 riboflavin synthase
Probab=29.76 E-value=2.4e+02 Score=27.71 Aligned_cols=55 Identities=24% Similarity=0.369 Sum_probs=42.8
Q ss_pred eEEecccccccccCcCCEEEEeCCeeEEEEEEEeCCeEEEEEe-------eCcEeccCceeeeC
Q 010211 200 TVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVV-------DGGELKSRRHLNVR 256 (515)
Q Consensus 200 ~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~~~~~~v~~~V~-------~gG~L~s~KgVnlp 256 (515)
.+.+..+.+.+.+++||-|-+|. +.|.|.+++++.+.+.+. +=|.++.+.-||+.
T Consensus 24 ~l~i~~~~~~~~l~~G~SIAvnG--vCLTV~~~~~~~f~vdvipETl~~T~L~~l~~G~~VNLE 85 (194)
T PLN02741 24 DLKIEASTVLDGVKLGDSIAVNG--TCLTVTEFDGDEFTVGLAPETLRKTSLGELKTGSLVNLE 85 (194)
T ss_pred EEEEEcchhhcccccCCEEEECc--EEEEEEEECCCEEEEEEEHHHhhhCccccCCCCCEEeec
Confidence 35555556778999999999997 899999999998877764 34667777778875
No 488
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=29.75 E-value=6e+02 Score=25.70 Aligned_cols=87 Identities=13% Similarity=0.252 Sum_probs=53.0
Q ss_pred CceEEEEecCh------hhhhcHHHHHhh-cCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEecccccccc
Q 010211 308 DIHVIVKIESA------DSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMID 380 (515)
Q Consensus 308 ~i~IIaKIEt~------~aveNldeIl~~-sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~ 380 (515)
.++|++=+|+- ++++|..++++. ++||-|-=+. -+...+++.++++.||+--|...-+...
T Consensus 73 ~~pviaD~~~G~g~~~~~~~~~~~~l~~aGa~gv~iED~~------------~~~~~i~ai~~a~i~ViaRtd~~pq~~~ 140 (240)
T cd06556 73 LALIVADLPFGAYGAPTAAFELAKTFMRAGAAGVKIEGGE------------WHIETLQMLTAAAVPVIAHTGLTPQSVN 140 (240)
T ss_pred CCCEEEeCCCCCCcCHHHHHHHHHHHHHcCCcEEEEcCcH------------HHHHHHHHHHHcCCeEEEEeCCchhhhh
Confidence 46899988765 455566667766 7888885321 2333567778888888866644222111
Q ss_pred -------CC-CcChH-H-HhHHHHHHHhCCcEEeec
Q 010211 381 -------HP-TPTRA-E-VSDIAIAVREGADAVMLS 406 (515)
Q Consensus 381 -------~~-~PtrA-E-v~DvanaV~~G~D~vmLs 406 (515)
.. .+... | +.+.-.+...|+|++++-
T Consensus 141 ~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e 176 (240)
T cd06556 141 TSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVME 176 (240)
T ss_pred ccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 00 01112 2 666666778899999993
No 489
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=29.75 E-value=2.3e+02 Score=30.02 Aligned_cols=65 Identities=15% Similarity=0.134 Sum_probs=45.6
Q ss_pred HHHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEe
Q 010211 297 ELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVAT 372 (515)
Q Consensus 297 ~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivAT 372 (515)
.+++.+.+.|.++.+-+-.+... -+|++++++-.|.|+.+-. -+.....+-+.|.++|+|.+.+.
T Consensus 84 aa~~~l~~inp~v~v~~~~~~~~-~~~~~~~~~~~DlVid~~D----------n~~~r~~ln~~~~~~~iP~i~~~ 148 (339)
T PRK07688 84 AAKKRLEEINSDVRVEAIVQDVT-AEELEELVTGVDLIIDATD----------NFETRFIVNDAAQKYGIPWIYGA 148 (339)
T ss_pred HHHHHHHHHCCCcEEEEEeccCC-HHHHHHHHcCCCEEEEcCC----------CHHHHHHHHHHHHHhCCCEEEEe
Confidence 34566777788877766554432 4678888877888887622 23566778899999999988653
No 490
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=29.71 E-value=2.5e+02 Score=31.57 Aligned_cols=150 Identities=18% Similarity=0.209 Sum_probs=93.2
Q ss_pred CeEEEEEeeCcEeccCceeeeCCCccCCCCCCHhhHHHhhcchhcCCcEEEec---ccCCHHHHHHHHHHHHhcCCCceE
Q 010211 235 DLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVS---FVKDAKVVHELKDYLKSCNADIHV 311 (515)
Q Consensus 235 ~~v~~~V~~gG~L~s~KgVnlpg~~~~lp~ltekD~~dI~~al~~gvD~ValS---fVrsa~dv~~vr~~l~~~~~~i~I 311 (515)
+.++.++-+|.+ ...|=.||+..+ |+ ++..++ ..+-|+|.|.-+ .+-+.+|..++-.-|++.|..-.|
T Consensus 236 ~~ieIKiaQGAK--PGeGG~Lpg~KV-----~~-~IA~~R-~~~pG~~~ISP~pHHDiysieDLaqlI~dLk~~~~~~~I 306 (485)
T COG0069 236 DAIEIKIAQGAK--PGEGGQLPGEKV-----TP-EIAKTR-GSPPGVGLISPPPHHDIYSIEDLAQLIKDLKEANPWAKI 306 (485)
T ss_pred ceEEEEeccCCC--CCCCCCCCCccC-----CH-HHHHhc-CCCCCCCCcCCCCcccccCHHHHHHHHHHHHhcCCCCeE
Confidence 445555555543 334446777665 32 344443 345577766432 245778887777778888877679
Q ss_pred EEEecChhhhhcHHH-HHhh-cCeeEEcCCcccccCCC---------C---CHHHHHHHHHHHHHhcCCcEEEEeccccc
Q 010211 312 IVKIESADSIPNLHS-IISA-SDGAMVARGDLGAELPI---------E---DVPLLQEDIIRRCRSMQKPVIVATNMLES 377 (515)
Q Consensus 312 IaKIEt~~aveNlde-Il~~-sDgImIgrgDLg~elg~---------e---~v~~aqk~Ii~~c~~aGKPvivATqmLeS 377 (515)
.+|+=...+++-+.. .++. +|.|.|.=.|=|.-... | -++++++.+...-.+ .|+.+.+.
T Consensus 307 ~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~glR-d~v~l~~~----- 380 (485)
T COG0069 307 SVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGLR-DKVKLIAD----- 380 (485)
T ss_pred EEEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCCc-ceeEEEec-----
Confidence 999988878877666 4444 89999986554433221 1 366666666665555 45555432
Q ss_pred cccCCCcChHHHhHHHHHHHhCCcEEee
Q 010211 378 MIDHPTPTRAEVSDIAIAVREGADAVML 405 (515)
Q Consensus 378 Mi~~~~PtrAEv~DvanaV~~G~D~vmL 405 (515)
...-| -.||+-+++.|+|.+=.
T Consensus 381 ---Ggl~T---g~DVaka~aLGAd~v~~ 402 (485)
T COG0069 381 ---GGLRT---GADVAKAAALGADAVGF 402 (485)
T ss_pred ---CCccC---HHHHHHHHHhCcchhhh
Confidence 23333 35899999999998654
No 491
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=29.66 E-value=1.2e+02 Score=31.34 Aligned_cols=67 Identities=12% Similarity=0.098 Sum_probs=43.7
Q ss_pred CHhhHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEcC
Q 010211 266 TDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVAR 338 (515)
Q Consensus 266 tekD~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIgr 338 (515)
+-++.+++..+.+.|+|||++.. -+.++++++.+.+ +..+.+.| |=.. -.+|+.++++. +|+|-+|.
T Consensus 194 sv~tleea~~A~~~gaDyI~lD~-~~~e~l~~~~~~~---~~~i~i~A-iGGI-t~~ni~~~a~~Gvd~IAvg~ 261 (277)
T PRK08072 194 ETETEEQVREAVAAGADIIMFDN-RTPDEIREFVKLV---PSAIVTEA-SGGI-TLENLPAYGGTGVDYISLGF 261 (277)
T ss_pred EeCCHHHHHHHHHcCCCEEEECC-CCHHHHHHHHHhc---CCCceEEE-ECCC-CHHHHHHHHHcCCCEEEECh
Confidence 33456677777889999999974 4567776666654 22333222 1111 25688888888 99999974
No 492
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=29.64 E-value=7.3e+02 Score=26.74 Aligned_cols=136 Identities=20% Similarity=0.289 Sum_probs=71.4
Q ss_pred CCCCCHhhHHHh--------hcchhcCCcEEEecc-------------cCC------------HHHHHHHHHHH-HhcCC
Q 010211 262 LPSITDKDWEDI--------KFGVDNQVDFYAVSF-------------VKD------------AKVVHELKDYL-KSCNA 307 (515)
Q Consensus 262 lp~ltekD~~dI--------~~al~~gvD~ValSf-------------Vrs------------a~dv~~vr~~l-~~~~~ 307 (515)
-..||+.|++++ +.|.+.|+|+|=+-- .+. +.-..++-+.+ +..+.
T Consensus 136 pr~mt~~eI~~ii~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~ 215 (363)
T COG1902 136 PRELTEEEIEEVIEDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGA 215 (363)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCC
Confidence 346899998777 345678999885421 111 11111211122 22356
Q ss_pred CceEEEEecCh-----------hhhhcHHHHHhh--cCeeEEcCCcccc--cCCCCCHHHHHHHHHHHH-HhcCCcEEEE
Q 010211 308 DIHVIVKIESA-----------DSIPNLHSIISA--SDGAMVARGDLGA--ELPIEDVPLLQEDIIRRC-RSMQKPVIVA 371 (515)
Q Consensus 308 ~i~IIaKIEt~-----------~aveNldeIl~~--sDgImIgrgDLg~--elg~e~v~~aqk~Ii~~c-~~aGKPvivA 371 (515)
+..|..+|--- ++++-++++-+. +|.|-+.-|+... .+.... +..|....+.- ...++|+|.+
T Consensus 216 ~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~-~~~~~~~a~~i~~~~~~pvi~~ 294 (363)
T COG1902 216 DFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSG-PGYQVEFAARIKKAVRIPVIAV 294 (363)
T ss_pred CceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccc-cchhHHHHHHHHHhcCCCEEEe
Confidence 66677777321 222233333333 4777777776632 222222 44555544332 3445998875
Q ss_pred eccccccccCCCcChHHHhHHHHHHHhC-CcEEeeccccc
Q 010211 372 TNMLESMIDHPTPTRAEVSDIAIAVREG-ADAVMLSGETA 410 (515)
Q Consensus 372 TqmLeSMi~~~~PtrAEv~DvanaV~~G-~D~vmLs~ETa 410 (515)
. .-..|..|| ..+..| +|.|-+.-..-
T Consensus 295 G-------~i~~~~~Ae-----~~l~~g~aDlVa~gR~~l 322 (363)
T COG1902 295 G-------GINDPEQAE-----EILASGRADLVAMGRPFL 322 (363)
T ss_pred C-------CCCCHHHHH-----HHHHcCCCCEEEechhhh
Confidence 3 123555555 667776 99988765444
No 493
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=29.58 E-value=4.2e+02 Score=28.19 Aligned_cols=111 Identities=23% Similarity=0.265 Sum_probs=71.3
Q ss_pred HHhhcchhc-CCcEEEecccC-CHHHHHHHHHHHHhcCCCceEEEEecChhhhhcHHHHHhh-cCeeEEcCCcccccCC-
Q 010211 271 EDIKFGVDN-QVDFYAVSFVK-DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELP- 346 (515)
Q Consensus 271 ~dI~~al~~-gvD~ValSfVr-sa~dv~~vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~-sDgImIgrgDLg~elg- 346 (515)
+.+...++. |+-.+..+|-. ..+++..++. ..++++.++=|..-- ..-.+. .|+++....+=|-+.|
T Consensus 94 ~~~~~ii~~~~vpvv~~~~g~~~~~~i~~~~~------~g~~v~~~v~~~~~A---~~~~~~G~d~vI~~g~eAGGH~g~ 164 (336)
T COG2070 94 AGVDAIIEGAGVPVVSTSFGAPPAEFVARLKA------AGIKVIHSVITVREA---LKAERAGADAVIAQGAEAGGHRGG 164 (336)
T ss_pred HhhhhHHhcCCCCEEeccCCCCcHHHHHHHHH------cCCeEEEEeCCHHHH---HHHHhCCCCEEEecCCcCCCcCCC
Confidence 444455555 89999999984 6666666655 245677776654322 222223 8999999888888887
Q ss_pred ---CCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEe
Q 010211 347 ---IEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVM 404 (515)
Q Consensus 347 ---~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vm 404 (515)
-.....+..+|.+.++. .|||.|.-+ -+. .+++.++..|+|+|-
T Consensus 165 ~~~~~~t~~Lv~ev~~~~~~--iPViAAGGI---------~dg---~~i~AAlalGA~gVq 211 (336)
T COG2070 165 VDLEVSTFALVPEVVDAVDG--IPVIAAGGI---------ADG---RGIAAALALGADGVQ 211 (336)
T ss_pred CCCCccHHHHHHHHHHHhcC--CCEEEecCc---------cCh---HHHHHHHHhccHHHH
Confidence 34457777888777766 899997632 222 245556666666553
No 494
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=29.57 E-value=2.4e+02 Score=29.25 Aligned_cols=50 Identities=30% Similarity=0.364 Sum_probs=36.9
Q ss_pred cCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHHHH
Q 010211 364 MQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTV 425 (515)
Q Consensus 364 aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~I 425 (515)
...||++. .+.-+ -+|++.++..|+|++++++--+.-+.|++-.+-|+.-
T Consensus 188 ~~vpVivd---------AGIgt---~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~A 237 (267)
T CHL00162 188 AKIPVIID---------AGIGT---PSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLA 237 (267)
T ss_pred CCCcEEEe---------CCcCC---HHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHH
Confidence 45888884 34444 3478899999999999998888889995555555443
No 495
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=29.56 E-value=5.8e+02 Score=25.45 Aligned_cols=118 Identities=12% Similarity=0.170 Sum_probs=61.4
Q ss_pred hHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEecChhh---hh--------cHHHHHhh-----cC
Q 010211 269 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADS---IP--------NLHSIISA-----SD 332 (515)
Q Consensus 269 D~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKIEt~~a---ve--------NldeIl~~-----sD 332 (515)
..++++..++.|++.|.++. ...++...+++..+..+++ +++-|....+ .. ++.+.++. +.
T Consensus 87 s~e~v~~~l~~Ga~kvvigt-~a~~~~~~l~~~~~~fg~~--ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~ 163 (234)
T PRK13587 87 TKSQIMDYFAAGINYCIVGT-KGIQDTDWLKEMAHTFPGR--IYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLG 163 (234)
T ss_pred CHHHHHHHHHCCCCEEEECc-hHhcCHHHHHHHHHHcCCC--EEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCC
Confidence 45667777788999887763 2233444455555444544 4444665544 10 12233332 45
Q ss_pred eeEEcCCccccc-CCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeec
Q 010211 333 GAMVARGDLGAE-LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (515)
Q Consensus 333 gImIgrgDLg~e-lg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs 406 (515)
.+++---|---. -| +.+. ..+++ ++..+.|++.+ .+.-+..++. .+...|+|++++.
T Consensus 164 ~ii~tdi~~dGt~~G-~~~~-li~~l---~~~~~ipvi~~---------GGi~s~edi~---~l~~~G~~~vivG 221 (234)
T PRK13587 164 GIIYTDIAKDGKMSG-PNFE-LTGQL---VKATTIPVIAS---------GGIRHQQDIQ---RLASLNVHAAIIG 221 (234)
T ss_pred EEEEecccCcCCCCc-cCHH-HHHHH---HHhCCCCEEEe---------CCCCCHHHHH---HHHHcCCCEEEEh
Confidence 566532211111 12 2332 33333 34468999985 3555555444 4456699999974
No 496
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=29.54 E-value=2.9e+02 Score=21.94 Aligned_cols=68 Identities=18% Similarity=0.272 Sum_probs=41.5
Q ss_pred CcEEEecCCEEEEEeec-CCCCcceEEecccccccccCcCCEEEEeCCeeEEEEEEEe---CCeEEEEEeeCc
Q 010211 177 QPIILKEGQEFNFTIKR-GVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKT---KDLVKCIVVDGG 245 (515)
Q Consensus 177 ~~i~L~~G~~v~lt~~~-~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~~~---~~~v~~~V~~gG 245 (515)
..+.++.|+.+.|...- +....+..|.-....+.. ...-.+..+++.-.|.+..+. .+...|.+.+.+
T Consensus 8 ~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~ 79 (90)
T PF07679_consen 8 KDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTS-SQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSS 79 (90)
T ss_dssp SEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEES-SSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETT
T ss_pred CCEEEeCCCEEEEEEEEEeCCCCcccccccccceee-eeeeeeecccceeEEccCCCChhhCEEEEEEEEECC
Confidence 57899999999998762 222223333322222221 223345566788888888764 345899998863
No 497
>PRK14852 hypothetical protein; Provisional
Probab=29.44 E-value=1.9e+02 Score=35.36 Aligned_cols=66 Identities=14% Similarity=0.131 Sum_probs=47.2
Q ss_pred HHHHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEe
Q 010211 298 LKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVAT 372 (515)
Q Consensus 298 vr~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivAT 372 (515)
+++.+.+.|..+.|.+--|.. .-+|++++++-+|.|+=+-.++ -..+...+...|.+.|+|++.++
T Consensus 391 aa~~l~~INP~v~I~~~~~~I-~~en~~~fl~~~DiVVDa~D~~--------~~~~rr~l~~~c~~~~IP~I~ag 456 (989)
T PRK14852 391 MTERALSVNPFLDIRSFPEGV-AAETIDAFLKDVDLLVDGIDFF--------ALDIRRRLFNRALELGIPVITAG 456 (989)
T ss_pred HHHHHHHHCCCCeEEEEecCC-CHHHHHHHhhCCCEEEECCCCc--------cHHHHHHHHHHHHHcCCCEEEee
Confidence 556677778887776654543 3378999998899888652111 12467788899999999999865
No 498
>PRK10425 DNase TatD; Provisional
Probab=29.42 E-value=5.8e+02 Score=25.87 Aligned_cols=100 Identities=11% Similarity=0.168 Sum_probs=55.4
Q ss_pred hH-HHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCCCceEEEEe------c-ChhhhhcHHHHHhhcCeeEEcCCc
Q 010211 269 DW-EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKI------E-SADSIPNLHSIISASDGAMVARGD 340 (515)
Q Consensus 269 D~-~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~~i~IIaKI------E-t~~aveNldeIl~~sDgImIgrgD 340 (515)
|. +-++.+.+.|+..+...- .+.++.....++.+.. ..+....=| | +.+.++.+++++..-. ++|=|.
T Consensus 16 d~~~vl~~a~~~gv~~~i~~~-~~~~~~~~~~~l~~~~-~~v~~~~GiHP~~~~~~~~~~~~~l~~~~~~~~--~vaIGE 91 (258)
T PRK10425 16 DRDDVVARAFAAGVNGMLITG-TNLRESQQAQKLARQY-PSCWSTAGVHPHDSSQWQAATEEAIIELAAQPE--VVAIGE 91 (258)
T ss_pred cHHHHHHHHHHCCCCEEEEeC-CCHHHHHHHHHHHHhC-CCEEEEEEeCcCccccCCHHHHHHHHHhccCCC--EEEEee
Confidence 44 445677777876665543 4677777777665442 223222222 2 2333444555543323 344466
Q ss_pred ccccCCCC-CHHHHH----HHHHHHHHhcCCcEEEEe
Q 010211 341 LGAELPIE-DVPLLQ----EDIIRRCRSMQKPVIVAT 372 (515)
Q Consensus 341 Lg~elg~e-~v~~aq----k~Ii~~c~~aGKPvivAT 372 (515)
.|.+.... .-...| ++.++.|.+.++|+++.+
T Consensus 92 iGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~ 128 (258)
T PRK10425 92 CGLDFNRNFSTPEEQERAFVAQLAIAAELNMPVFMHC 128 (258)
T ss_pred eeeccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 66665431 123334 666788999999999854
No 499
>PRK15108 biotin synthase; Provisional
Probab=29.39 E-value=1.4e+02 Score=31.66 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=32.3
Q ss_pred EEEEecCCCCCCHHHHHHHHHhCCcEEEEecCC-------C-ChHHHHHHHHHHHHH
Q 010211 102 KIVCTIGPSTSSREMIWKLAEEGMNVARLNMSH-------G-DHASHQKTIDLVKEY 150 (515)
Q Consensus 102 KIi~TiGPss~~~e~i~~li~aGm~v~RiN~SH-------g-~~e~~~~~i~~ir~~ 150 (515)
++++|+|+- +.|.+++|.++|+|.+-+|+-= - +...+.++++.++.+
T Consensus 126 ~v~~s~G~l--s~e~l~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a 180 (345)
T PRK15108 126 ETCMTLGTL--SESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKV 180 (345)
T ss_pred EEEEeCCcC--CHHHHHHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHH
Confidence 577899975 4999999999999976665321 0 123455666666665
No 500
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=29.29 E-value=5e+02 Score=27.08 Aligned_cols=104 Identities=17% Similarity=0.230 Sum_probs=64.9
Q ss_pred HHHHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccC-----------CCCCHHHHHHHHHHHHHhc--CC
Q 010211 300 DYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAEL-----------PIEDVPLLQEDIIRRCRSM--QK 366 (515)
Q Consensus 300 ~~l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~el-----------g~e~v~~aqk~Ii~~c~~a--GK 366 (515)
+.++..|.++.|..-=-|..|+.-++.-+-.+-|-+.=|..|+=.+ +.+.+.. .++++++. .+
T Consensus 115 ~~~~~~~~~~~I~~TRKT~Pg~R~l~k~AV~~GGg~~HR~gLsd~vLikdNHi~~~g~~~~i~~----av~~~r~~~~~~ 190 (284)
T PRK06096 115 ALLRERYPDGNIACTRKAIPGTRLLATQAVLAAGGLIHRAGCAETILLFANHRHFLHDPQDWSG----AINQLRRHAPEK 190 (284)
T ss_pred HHHHhhCCCcEEEecCcCCCchhHHHHHHHHcCCCcCccCCcchhhhhHHHHHHHhCCcccHHH----HHHHHHHhCCCC
Confidence 3344457788888887888888888877655555555555554333 2233333 44444443 45
Q ss_pred cEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHHHHHH
Q 010211 367 PVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVAL 427 (515)
Q Consensus 367 PvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~ 427 (515)
++.+ ... + ..++-.++..|+|.+|| .+++.+-++...++++
T Consensus 191 kIeV---------Ev~--t---leqa~ea~~agaDiI~L------Dn~~~e~l~~av~~~~ 231 (284)
T PRK06096 191 KIVV---------EAD--T---PKEAIAALRAQPDVLQL------DKFSPQQATEIAQIAP 231 (284)
T ss_pred CEEE---------ECC--C---HHHHHHHHHcCCCEEEE------CCCCHHHHHHHHHHhh
Confidence 6665 222 2 33445788899999999 5887777777666553
Done!