Query 010213
Match_columns 515
No_of_seqs 352 out of 2513
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 22:22:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010213.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010213hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0571 Asparagine synthase (g 100.0 1E-112 3E-117 821.9 37.5 506 1-509 1-507 (543)
2 PLN02549 asparagine synthase ( 100.0 3E-109 6E-114 879.4 53.6 511 1-511 1-511 (578)
3 PRK09431 asnB asparagine synth 100.0 2E-109 5E-114 879.4 51.9 504 1-510 1-510 (554)
4 PTZ00077 asparagine synthetase 100.0 4E-109 8E-114 881.0 52.2 511 1-511 1-525 (586)
5 TIGR03104 trio_amidotrans aspa 100.0 3.6E-91 7.9E-96 750.1 44.2 465 1-489 1-557 (589)
6 TIGR03108 eps_aminotran_1 exos 100.0 3.4E-86 7.3E-91 721.6 44.0 467 1-489 1-597 (628)
7 TIGR01536 asn_synth_AEB aspara 100.0 2.6E-84 5.6E-89 684.3 45.4 429 4-453 1-467 (467)
8 COG0367 AsnB Asparagine syntha 100.0 6.3E-84 1.4E-88 682.6 39.5 485 1-508 1-504 (542)
9 KOG0573 Asparagine synthase [A 100.0 1.6E-44 3.4E-49 352.3 26.2 430 1-458 1-499 (520)
10 cd01991 Asn_Synthase_B_C The C 100.0 1.8E-40 3.9E-45 326.6 18.8 227 211-456 1-269 (269)
11 cd00712 AsnB Glutamine amidotr 100.0 2.1E-39 4.5E-44 308.7 24.1 189 2-192 1-220 (220)
12 PF00733 Asn_synthase: Asparag 100.0 1.1E-38 2.4E-43 310.9 17.3 225 209-450 1-255 (255)
13 cd03766 Gn_AT_II_novel Gn_AT_I 100.0 4.5E-36 9.7E-41 275.0 17.6 168 1-178 1-179 (181)
14 PRK08525 amidophosphoribosyltr 100.0 9.1E-35 2E-39 301.1 26.9 218 1-224 1-274 (445)
15 PRK07631 amidophosphoribosyltr 100.0 6.4E-34 1.4E-38 294.2 27.2 233 1-243 11-298 (475)
16 PRK09123 amidophosphoribosyltr 100.0 1.1E-33 2.4E-38 294.1 28.1 233 1-243 21-310 (479)
17 PRK07272 amidophosphoribosyltr 100.0 1.8E-33 4E-38 291.5 29.6 183 1-189 11-236 (484)
18 cd00714 GFAT Glutamine amidotr 100.0 1.9E-34 4.2E-39 272.6 20.4 172 2-181 1-214 (215)
19 PRK06388 amidophosphoribosyltr 100.0 5.7E-34 1.2E-38 295.0 25.3 227 1-234 19-302 (474)
20 PRK07349 amidophosphoribosyltr 100.0 3.1E-33 6.8E-38 290.4 27.8 228 1-233 33-322 (500)
21 PRK08341 amidophosphoribosyltr 100.0 4.3E-33 9.3E-38 286.5 26.5 179 1-188 4-222 (442)
22 PRK06781 amidophosphoribosyltr 100.0 1.1E-32 2.3E-37 285.7 29.0 234 1-244 11-299 (471)
23 PRK07847 amidophosphoribosyltr 100.0 4.1E-33 8.8E-38 290.2 21.5 228 1-234 23-313 (510)
24 PLN02440 amidophosphoribosyltr 100.0 9.2E-33 2E-37 288.3 22.9 180 1-186 1-222 (479)
25 PRK05793 amidophosphoribosyltr 100.0 2.1E-31 4.6E-36 277.4 28.0 183 1-188 14-238 (469)
26 cd00715 GPATase_N Glutamine am 100.0 9E-32 1.9E-36 261.0 22.7 183 2-190 1-226 (252)
27 PRK00331 glucosamine--fructose 100.0 5.6E-32 1.2E-36 294.5 21.8 180 1-188 1-222 (604)
28 cd01907 GlxB Glutamine amidotr 100.0 4.4E-32 9.6E-37 261.5 18.1 174 2-181 1-248 (249)
29 PRK09246 amidophosphoribosyltr 100.0 9.2E-32 2E-36 282.7 21.0 181 1-186 1-235 (501)
30 TIGR01134 purF amidophosphorib 100.0 1.1E-30 2.3E-35 270.9 23.2 226 2-233 1-283 (442)
31 TIGR01135 glmS glucosamine--fr 100.0 4.7E-31 1E-35 287.4 20.7 179 2-188 1-221 (607)
32 cd01909 betaLS_CarA_N Glutamin 100.0 1.2E-30 2.5E-35 240.0 16.9 129 60-193 44-199 (199)
33 cd00352 Gn_AT_II Glutamine ami 100.0 9.2E-30 2E-34 242.8 21.0 178 2-179 1-219 (220)
34 PTZ00295 glucosamine-fructose- 100.0 3.5E-30 7.7E-35 281.0 20.1 183 1-191 24-255 (640)
35 cd01910 Wali7 This domain is p 100.0 2E-28 4.3E-33 225.7 16.7 138 61-201 64-209 (224)
36 PF13537 GATase_7: Glutamine a 100.0 5.8E-29 1.3E-33 215.0 10.2 119 48-166 1-125 (125)
37 PLN02981 glucosamine:fructose- 100.0 8.8E-28 1.9E-32 262.3 19.4 185 1-188 1-274 (680)
38 PTZ00394 glucosamine-fructose- 100.0 1.3E-27 2.9E-32 259.8 20.6 184 1-187 1-276 (670)
39 COG0034 PurF Glutamine phospho 100.0 1.2E-26 2.6E-31 230.1 24.7 239 1-246 4-301 (470)
40 KOG0572 Glutamine phosphoribos 99.9 5.3E-26 1.1E-30 218.2 18.3 187 1-191 1-241 (474)
41 PF13522 GATase_6: Glutamine a 99.9 4E-26 8.7E-31 199.1 14.7 127 33-160 1-133 (133)
42 COG0449 GlmS Glucosamine 6-pho 99.9 6.6E-25 1.4E-29 227.9 18.7 179 1-188 1-219 (597)
43 TIGR03442 conserved hypothetic 99.8 1.3E-18 2.7E-23 167.7 16.3 174 1-188 1-247 (251)
44 KOG1268 Glucosamine 6-phosphat 99.8 9.5E-18 2E-22 167.5 14.0 186 1-186 1-278 (670)
45 PF00310 GATase_2: Glutamine a 99.7 3.6E-16 7.8E-21 157.4 18.9 111 43-161 196-361 (361)
46 cd01908 YafJ Glutamine amidotr 99.7 1.9E-16 4.2E-21 154.1 15.2 134 43-184 81-256 (257)
47 cd00713 GltS Glutamine amidotr 99.7 1.4E-15 3E-20 153.8 16.3 135 43-185 202-395 (413)
48 cd01996 Alpha_ANH_like_III Thi 99.5 5.1E-13 1.1E-17 119.9 12.2 126 227-364 3-131 (154)
49 PF12481 DUF3700: Aluminium in 99.4 3.6E-12 7.9E-17 115.5 16.3 131 68-201 75-213 (228)
50 TIGR03573 WbuX N-acetyl sugar 99.4 1.1E-11 2.3E-16 125.6 15.7 117 227-354 61-179 (343)
51 COG0067 GltB Glutamate synthas 99.2 1.4E-10 3E-15 115.2 14.5 133 43-186 203-362 (371)
52 COG1606 ATP-utilizing enzymes 99.1 3.6E-10 7.9E-15 105.1 11.7 116 222-353 14-131 (269)
53 TIGR00268 conserved hypothetic 99.1 7.9E-10 1.7E-14 107.3 13.2 118 218-352 5-124 (252)
54 PRK11750 gltB glutamate syntha 99.1 6.1E-10 1.3E-14 126.7 13.5 133 43-183 213-403 (1485)
55 PF13230 GATase_4: Glutamine a 99.1 6.2E-10 1.3E-14 108.7 11.7 175 1-188 1-254 (271)
56 cd00553 NAD_synthase NAD+ synt 99.0 3.1E-09 6.7E-14 103.0 13.0 133 208-353 8-147 (248)
57 PRK14561 hypothetical protein; 99.0 2.4E-09 5.3E-14 99.5 11.7 106 227-348 2-107 (194)
58 TIGR00552 nadE NAD+ synthetase 99.0 1.9E-09 4.1E-14 104.6 9.3 135 206-354 5-146 (250)
59 cd01990 Alpha_ANH_like_I This 98.9 4.2E-09 9.1E-14 98.9 10.2 110 228-352 1-112 (202)
60 PRK13980 NAD synthetase; Provi 98.9 6.5E-09 1.4E-13 101.7 11.4 133 208-353 15-149 (265)
61 PRK00876 nadE NAD synthetase; 98.9 1.4E-08 2.9E-13 101.1 12.8 83 205-296 14-98 (326)
62 PRK00143 mnmA tRNA-specific 2- 98.9 1.5E-08 3.2E-13 102.8 11.9 113 227-349 2-130 (346)
63 COG0482 TrmU Predicted tRNA(5- 98.9 1.5E-08 3.3E-13 100.3 11.3 112 225-346 3-127 (356)
64 cd01998 tRNA_Me_trans tRNA met 98.8 2.2E-08 4.7E-13 101.7 12.1 113 227-349 1-127 (349)
65 cd01993 Alpha_ANH_like_II This 98.8 2.1E-08 4.5E-13 92.7 10.7 116 227-349 1-120 (185)
66 PF03054 tRNA_Me_trans: tRNA m 98.8 7.1E-09 1.5E-13 104.2 7.5 114 227-350 2-131 (356)
67 PRK14665 mnmA tRNA-specific 2- 98.8 2.1E-08 4.6E-13 101.6 10.3 113 223-346 3-124 (360)
68 PF06508 QueC: Queuosine biosy 98.8 4.8E-08 1E-12 91.7 11.8 156 228-411 2-174 (209)
69 COG0603 Predicted PP-loop supe 98.8 1.5E-08 3.4E-13 93.7 8.0 118 227-355 4-134 (222)
70 PRK11106 queuosine biosynthesi 98.8 4.2E-08 9.1E-13 93.1 10.9 154 227-408 3-173 (231)
71 PRK04527 argininosuccinate syn 98.7 6.3E-08 1.4E-12 98.3 11.3 113 225-348 2-124 (400)
72 PRK14664 tRNA-specific 2-thiou 98.7 1.1E-07 2.3E-12 96.2 12.5 113 224-347 4-120 (362)
73 TIGR00420 trmU tRNA (5-methyla 98.7 1.2E-07 2.7E-12 96.1 11.6 109 227-345 2-127 (352)
74 PRK00509 argininosuccinate syn 98.7 1.3E-07 2.7E-12 96.5 11.3 110 226-345 3-119 (399)
75 TIGR00884 guaA_Cterm GMP synth 98.7 1.8E-07 3.9E-12 93.1 11.5 118 216-348 8-130 (311)
76 cd01712 ThiI ThiI is required 98.7 2.2E-07 4.8E-12 85.3 11.3 109 227-347 1-115 (177)
77 PTZ00323 NAD+ synthase; Provis 98.6 4.9E-07 1.1E-11 88.9 13.9 141 209-354 28-181 (294)
78 PRK00919 GMP synthase subunit 98.6 2.6E-07 5.7E-12 91.3 11.5 123 210-348 7-132 (307)
79 PF02540 NAD_synthase: NAD syn 98.6 2.5E-07 5.3E-12 89.0 10.6 134 208-354 3-139 (242)
80 PRK10696 tRNA 2-thiocytidine b 98.6 6.5E-07 1.4E-11 87.3 12.7 133 208-349 10-145 (258)
81 TIGR00364 exsB protein. This p 98.6 2.8E-07 6.1E-12 86.4 9.1 115 229-354 2-129 (201)
82 PRK08349 hypothetical protein; 98.5 6.3E-07 1.4E-11 83.8 10.2 111 227-348 2-118 (198)
83 PRK13981 NAD synthetase; Provi 98.5 9.3E-07 2E-11 95.5 13.0 138 207-355 260-406 (540)
84 PRK13820 argininosuccinate syn 98.5 7.6E-07 1.7E-11 90.8 11.5 111 226-346 3-120 (394)
85 TIGR02432 lysidine_TilS_N tRNA 98.5 6.6E-07 1.4E-11 83.0 9.4 108 227-348 1-112 (189)
86 cd01999 Argininosuccinate_Synt 98.5 1.3E-06 2.9E-11 89.1 11.9 108 228-345 1-116 (385)
87 PRK00768 nadE NAD synthetase; 98.5 1.6E-06 3.4E-11 83.8 11.7 143 209-354 20-170 (268)
88 PLN00200 argininosuccinate syn 98.5 1.3E-06 2.8E-11 89.4 11.5 111 226-345 6-123 (404)
89 cd01997 GMP_synthase_C The C-t 98.4 7.5E-07 1.6E-11 87.9 9.1 108 227-348 1-113 (295)
90 COG0037 MesJ tRNA(Ile)-lysidin 98.4 1.2E-06 2.6E-11 87.5 10.3 125 210-349 6-134 (298)
91 cd01986 Alpha_ANH_like Adenine 98.4 1.4E-06 3.1E-11 72.3 8.8 76 228-350 1-76 (103)
92 PRK00074 guaA GMP synthase; Re 98.4 2E-06 4.4E-11 91.7 12.1 126 208-348 199-329 (511)
93 KOG2805 tRNA (5-methylaminomet 98.3 3E-06 6.5E-11 81.0 10.4 118 226-353 6-139 (377)
94 cd01992 PP-ATPase N-terminal d 98.3 1.6E-06 3.5E-11 80.1 7.8 105 227-348 1-109 (185)
95 PF09147 DUF1933: Domain of un 98.3 1E-05 2.2E-10 71.0 11.9 111 69-182 48-186 (201)
96 PLN02347 GMP synthetase 98.3 3.3E-06 7.2E-11 90.0 10.8 121 216-349 220-349 (536)
97 PRK01565 thiamine biosynthesis 98.3 2.8E-06 6.1E-11 87.8 9.9 109 223-348 174-292 (394)
98 TIGR00032 argG argininosuccina 98.3 3.9E-06 8.4E-11 86.0 10.4 108 227-345 1-116 (394)
99 PF01171 ATP_bind_3: PP-loop f 98.3 2.8E-06 6.2E-11 78.3 8.6 104 227-348 1-109 (182)
100 PRK08384 thiamine biosynthesis 98.2 7.9E-06 1.7E-10 83.3 11.4 112 223-348 178-297 (381)
101 TIGR00342 thiazole biosynthesi 98.2 8.3E-06 1.8E-10 83.7 11.3 111 224-348 171-288 (371)
102 PRK02628 nadE NAD synthetase; 98.2 1.4E-05 3.1E-10 88.3 13.1 144 207-356 341-495 (679)
103 cd01995 ExsB ExsB is a transcr 98.1 1.2E-05 2.5E-10 73.3 9.5 87 227-348 1-89 (169)
104 COG2117 Predicted subunit of t 98.1 1.1E-05 2.3E-10 69.9 8.3 62 227-298 2-63 (198)
105 cd01713 PAPS_reductase This do 98.1 1.3E-05 2.9E-10 72.6 8.7 115 227-350 1-120 (173)
106 cd01994 Alpha_ANH_like_IV This 98.1 2.6E-05 5.7E-10 72.4 10.4 92 227-347 1-100 (194)
107 COG0171 NadE NAD synthase [Coe 98.0 5.1E-05 1.1E-09 73.3 12.0 140 208-354 6-155 (268)
108 TIGR03679 arCOG00187 arCOG0018 98.0 3.1E-05 6.7E-10 73.4 10.2 89 230-347 2-98 (218)
109 PRK01269 tRNA s(4)U8 sulfurtra 98.0 2.7E-05 5.9E-10 82.7 10.8 111 224-348 176-293 (482)
110 PRK05253 sulfate adenylyltrans 98.0 7.8E-05 1.7E-09 73.8 12.6 108 226-347 28-139 (301)
111 COG0121 Predicted glutamine am 98.0 0.00023 5E-09 68.3 15.0 42 43-84 71-116 (252)
112 PRK08576 hypothetical protein; 97.9 0.00011 2.4E-09 76.1 11.9 121 210-347 217-342 (438)
113 PF02568 ThiI: Thiamine biosyn 97.8 5.3E-05 1.1E-09 70.0 7.7 110 225-348 3-121 (197)
114 PF00764 Arginosuc_synth: Argi 97.8 9.9E-05 2.2E-09 74.9 10.1 108 230-348 2-121 (388)
115 COG1365 Predicted ATPase (PP-l 97.8 0.00014 3E-09 66.2 9.6 123 209-354 34-170 (255)
116 PRK10660 tilS tRNA(Ile)-lysidi 97.8 0.00013 2.8E-09 76.5 10.8 77 215-296 5-85 (436)
117 PRK05370 argininosuccinate syn 97.7 0.00046 1E-08 70.6 12.3 117 221-348 7-138 (447)
118 PLN02339 NAD+ synthase (glutam 97.5 0.0009 2E-08 74.2 12.9 89 208-296 329-449 (700)
119 COG0137 ArgG Argininosuccinate 97.5 0.0017 3.8E-08 64.7 12.6 114 225-348 4-128 (403)
120 COG0367 AsnB Asparagine syntha 97.4 0.00017 3.6E-09 77.6 4.8 93 385-489 419-513 (542)
121 TIGR02039 CysD sulfate adenyly 97.4 0.0014 3.1E-08 64.4 10.5 120 211-348 9-132 (294)
122 PRK02090 phosphoadenosine phos 97.3 0.00091 2E-08 64.5 8.5 71 212-295 30-102 (241)
123 COG0519 GuaA GMP synthase, PP- 97.3 0.0025 5.4E-08 60.7 10.5 76 208-293 5-83 (315)
124 PRK08557 hypothetical protein; 96.9 0.0095 2.1E-07 61.7 12.1 59 225-293 181-241 (417)
125 PF01507 PAPS_reduct: Phosphoa 96.8 0.0036 7.8E-08 56.8 7.3 106 227-348 1-112 (174)
126 COG0301 ThiI Thiamine biosynth 96.8 0.0095 2.1E-07 60.4 10.6 110 224-345 174-289 (383)
127 PRK12563 sulfate adenylyltrans 96.8 0.011 2.4E-07 58.5 10.8 108 226-347 38-149 (312)
128 KOG0399 Glutamate synthase [Am 96.6 0.0087 1.9E-07 66.9 9.2 133 43-183 285-477 (2142)
129 PRK13795 hypothetical protein; 96.4 0.022 4.8E-07 62.7 11.4 60 225-294 243-304 (636)
130 PRK13794 hypothetical protein; 96.3 0.061 1.3E-06 57.1 13.4 60 225-293 247-308 (479)
131 cd01984 AANH_like Adenine nucl 96.3 0.014 3.1E-07 46.3 6.7 21 228-248 1-21 (86)
132 TIGR00289 conserved hypothetic 96.2 0.062 1.4E-06 50.8 11.4 60 227-296 2-68 (222)
133 KOG1706 Argininosuccinate synt 96.2 0.021 4.5E-07 55.1 8.0 56 226-291 6-61 (412)
134 TIGR00434 cysH phosophoadenyly 96.1 0.074 1.6E-06 50.1 11.4 58 226-293 14-73 (212)
135 TIGR02057 PAPS_reductase phosp 95.7 0.13 2.7E-06 49.1 11.2 63 225-296 25-89 (226)
136 PRK06850 hypothetical protein; 95.6 0.22 4.7E-06 52.8 13.3 133 214-349 22-173 (507)
137 TIGR03183 DNA_S_dndC putative 95.1 0.21 4.6E-06 52.2 11.5 123 223-347 11-150 (447)
138 KOG1622 GMP synthase [Nucleoti 94.9 0.14 3.1E-06 52.1 9.0 71 217-296 223-295 (552)
139 COG0175 CysH 3'-phosphoadenosi 94.8 0.27 5.9E-06 47.9 10.7 60 225-294 39-100 (261)
140 COG2102 Predicted ATPases of P 93.9 0.69 1.5E-05 43.2 10.6 60 227-296 2-69 (223)
141 PF01902 ATP_bind_4: ATP-bindi 92.6 0.6 1.3E-05 44.1 8.4 59 227-295 2-67 (218)
142 COG3969 Predicted phosphoadeno 92.5 0.28 6.1E-06 48.3 6.0 44 223-271 25-68 (407)
143 TIGR00290 MJ0570_dom MJ0570-re 91.6 2.3 4.9E-05 40.3 11.0 57 228-294 3-66 (223)
144 KOG2303 Predicted NAD synthase 86.2 3.5 7.5E-05 42.9 8.4 69 228-296 352-449 (706)
145 KOG2840 Uncharacterized conser 77.9 8.2 0.00018 38.2 7.2 119 224-349 50-177 (347)
146 PF02677 DUF208: Uncharacteriz 65.9 35 0.00077 31.0 8.0 96 232-341 5-110 (176)
147 TIGR02055 APS_reductase thiore 59.7 20 0.00044 33.0 5.5 49 235-293 2-52 (191)
148 PF08057 Ery_res_leader2: Eryt 53.4 6.9 0.00015 19.0 0.7 13 388-400 1-13 (14)
149 PLN02309 5'-adenylylsulfate re 50.8 72 0.0016 33.8 8.5 57 226-293 111-169 (457)
150 TIGR00424 APS_reduc 5'-adenyly 43.0 1.1E+02 0.0024 32.5 8.3 57 226-293 116-174 (463)
151 COG1856 Uncharacterized homolo 39.6 25 0.00054 33.1 2.6 18 225-242 54-71 (275)
152 KOG0053 Cystathionine beta-lya 38.1 2.2E+02 0.0049 29.5 9.4 117 212-342 80-199 (409)
153 KOG3147 6-phosphogluconolacton 32.8 4.6E+02 0.0099 25.2 11.1 41 206-249 20-60 (252)
154 COG0041 PurE Phosphoribosylcar 28.4 2.5E+02 0.0054 24.9 6.8 59 273-352 13-74 (162)
155 COG1636 Uncharacterized protei 28.4 4.3E+02 0.0094 24.3 8.5 103 227-343 5-118 (204)
156 COG0626 MetC Cystathionine bet 21.2 5.4E+02 0.012 26.7 8.9 116 213-342 67-186 (396)
157 PF13519 VWA_2: von Willebrand 20.9 5.3E+02 0.012 22.0 9.2 70 225-303 99-169 (172)
158 PRK03359 putative electron tra 20.6 3.7E+02 0.008 26.1 7.2 57 229-291 84-144 (256)
159 COG1435 Tdk Thymidine kinase [ 20.5 2.4E+02 0.0053 26.1 5.5 30 324-353 99-131 (201)
No 1
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-112 Score=821.90 Aligned_cols=506 Identities=68% Similarity=1.153 Sum_probs=475.1
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEECCEEEEEeeeeecCCCCCCCceeeCCCcEEEEEeeEEcC
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYN 80 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nGei~n 80 (515)
||||+.++..+ .+.........+...+.|||||.+|.+......++|.||+|+++..+.||+.+.++.+++..||||||
T Consensus 1 MCGI~Av~~~~-~~~~~~~~~l~ls~~~~hRgpd~sg~~~~~~~~l~heRLAIvdp~sg~QPi~~~~~~~~~~vNGEIYN 79 (543)
T KOG0571|consen 1 MCGILAVLGHE-DSEAKKPKALELSRRIRHRGPDWSGLAQRNDNILGHERLAIVDPTSGAQPIVGEDGTYVVTVNGEIYN 79 (543)
T ss_pred CCceeeeeccc-chhhcChhhhhHHHhhcCCCCCcchhheeccccccccceeEecCCcCCcccccCCCcEEEEECceecc
Confidence 99999999832 22222334455667899999999999998888999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCCccCCChHHHHHHHHHHH-HHhhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEc
Q 010213 81 HEALRERLTNHKFRTGSDCDVIAHLYEEY-GENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISS 159 (515)
Q Consensus 81 ~~~L~~~l~~~~~~~~~D~e~i~~~~~~~-G~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faS 159 (515)
|.+|++.+..+.|+|.||+|+|+++|++. +.++...|+|+|||+++|...++++++||+.|++||||+++.++.++|||
T Consensus 80 H~~Lr~~~~~~~~~T~sDcEvIi~lY~khg~~~~~~~LDG~Fafvl~d~~~~kv~~aRDpiGv~~lY~g~~~~gs~~~aS 159 (543)
T KOG0571|consen 80 HKKLREHCKDFEFQTGSDCEVIIHLYEKHGGEQAICMLDGVFAFVLLDTKDDKVVAARDPIGVTPLYYGWDSDGSVYFAS 159 (543)
T ss_pred HHHHHHHhhhcccccCCCceeeeehHhhcCchhHHHHhhhheEEEEecCCCCeEEeccCCcCceeeEEEecCCCcEEEee
Confidence 99999999779999999999999999999 68999999999999999999899999999999999999998889999999
Q ss_pred CcccccccCCcceEeCCCeEEEecCCceEEeeCCCCCcCCCCCCCCcHHHHHHHHHHHHHHhhccccceEEeecCCcchH
Q 010213 160 ELKGLNDDCEHFEAFPPGHLYSSKSGGLKRWYNPTWYSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSS 239 (515)
Q Consensus 160 e~~~l~~~~~~i~~l~pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs 239 (515)
|+|.|...|+.|...||||++..+.+++.+|++|+|.....|+.+.....+|+.|.+||++||.+++|+||+||||||||
T Consensus 160 e~k~l~d~C~~i~~fpPgh~y~~~~~~~~r~f~p~w~~~~~~s~p~d~~~~r~~~~~aV~KRLM~d~p~GvLLSGGLDSS 239 (543)
T KOG0571|consen 160 EMKCLEDDCEKIESFPPGHYYTSKTGKLTRYFNPEWFDENIPSTPLDYLALRHTLEKAVRKRLMTDVPFGVLLSGGLDSS 239 (543)
T ss_pred ehhhhhhhhhceeecCCcceeecccccccCCCCchhhhccCCCCcccHHHHHHHHHHHHHHHhhccCceeEEeeCCchHH
Confidence 99999999999999999999999988999999999988878888878888999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHHHhCCCceEEEeChhHHHHHHHHHHHhhccCCCCccc
Q 010213 240 LVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIR 319 (515)
Q Consensus 240 ~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~ 319 (515)
+||++|++.+.+.+. +.+.++++|++|+++++|...|++||+++|+.||++.++.++.+++++++++++|++++++++
T Consensus 240 LvAsia~R~lk~~~~--~~~~~lhsFaIGle~SPDL~aarkVAd~igt~Hhe~~ft~qegidal~eVI~hLETYDvttIR 317 (543)
T KOG0571|consen 240 LVASIAARELKKAQA--ARGSKLHSFAIGLEDSPDLLAARKVADFIGTIHHEHTFTIQEGIDALDEVIYHLETYDVTTIR 317 (543)
T ss_pred HHHHHHHHHHHHhhh--hcCCCceEEEecCCCChhHHHHHHHHHHhCCcceEEEEcHHHHHHHHHHHheeeeccccceEe
Confidence 999999998764321 224689999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhCCCeEEEeccCccccccCCccccCCCChHHHHHHHHHHHHhhcccccccccccccccCceeccCCC
Q 010213 320 ASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFL 399 (515)
Q Consensus 320 ~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~~~~~~~~~~~~~~~~~~~~l~~~~l~r~d~~~~~~g~e~r~Pfl 399 (515)
++++||+++++++.+|++++|||+|+||+||||.+|+++|+.+.|++|.+++++.||.+|++|.|+.+|+||+|+|+|||
T Consensus 318 astpmyLlsr~Ikk~gvkmvlSGEGsDEifggYlYfh~APs~~~fh~E~~rrvk~Lh~~DcLRankST~a~GlE~RVPFL 397 (543)
T KOG0571|consen 318 ASTPMYLLSRKIKKLGVKMVLSGEGSDEIFGGYLYFHKAPSAEEFHEESVRRVKHLHLYDCLRANKSTMAHGLEARVPFL 397 (543)
T ss_pred cCCchHHHHHHHHhcceEEEEecCCchhhhcceeeeecCCCHHHHHHHHHHHHHHHHHHHHhhcCccccccceeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHcCCccccccCCCCCcchhHHHHHhhccCCCCCCChhhhhcccCCCCCCCchhhHHHHHHHHHHhcChHHHH
Q 010213 400 DKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKMVQ 479 (515)
Q Consensus 400 D~~lve~~~~lP~~~k~~~~~~~~~~K~lLR~a~~~~~~~~lP~~i~~R~K~~f~~~~~~~~~~~~~~~~~~~l~~~~l~ 479 (515)
|.+++++|++||+++|+.....++++||+||.||...++|+||++|+||.|.+|..++|.+|++.+++.++..++|..++
T Consensus 398 Dk~F~~~~~sldPe~K~~k~~~~r~eK~vlrsafd~~~~pyLP~eilwrqkeqfsdgVgySwid~L~d~~e~~isd~m~a 477 (543)
T KOG0571|consen 398 DKRFLELAMSLDPEEKMIKPKEGRIEKYVLRSAFDTTEKPYLPDEILWRQKEQFSDGVGYSWIDGLKDHAEKQISDAMFA 477 (543)
T ss_pred cHHHHHHHhcCChhHhcCCcchhhHHHHHHHhhcCCcCCCcChHHHHHHHHhhhccccchHHHHHHHHHHHHhcCHHHHh
Confidence 99999999999999999765445789999999999999999999999999999999999999999999999999999999
Q ss_pred hcCccCCCCCCChHHHHHHHHHHhhhCCCc
Q 010213 480 NAQYIFPHNTPLTKEAYYYRMIFERFFPQV 509 (515)
Q Consensus 480 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (515)
+..-..++++|.|||.||||+||+++||++
T Consensus 478 ~a~~~fp~ntP~TkEayyYR~iFe~~fp~~ 507 (543)
T KOG0571|consen 478 NAAAEFPDNTPTTKEAYYYRQIFERFFPQK 507 (543)
T ss_pred ChHhhCCCCCCCchhHHHHHHHHHHHCCcc
Confidence 999999999999999999999999999983
No 2
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=100.00 E-value=2.7e-109 Score=879.44 Aligned_cols=511 Identities=86% Similarity=1.415 Sum_probs=458.8
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEECCEEEEEeeeeecCCCCCCCceeeCCCcEEEEEeeEEcC
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYN 80 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nGei~n 80 (515)
||||+|+++.+.......+.+..|+..|+|||||++|++..++++|||+||+|+|+..+.||+.++++++++++||||||
T Consensus 1 MCGI~g~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~Lgh~RLsI~d~~~g~QP~~~~~~~~~lv~NGEIyN 80 (578)
T PLN02549 1 MCGILAVLGCSDDSQAKRSRVLELSRRLRHRGPDWSGLYGNEDCYLAHERLAIMDPESGDQPLYNEDKTIVVTANGEIYN 80 (578)
T ss_pred CCcEEEEEeCCCCcchhHHHHHHHHHHhcCcCCCccCEEEeCCeEEEEeeeeEeCCCCCCCCcCcCCCCEEEEEEEEEEc
Confidence 99999999765443223456789999999999999999999999999999999998889999999999999999999999
Q ss_pred hHHHHHHhcCCCccCCChHHHHHHHHHHHHHhhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcC
Q 010213 81 HEALRERLTNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSE 160 (515)
Q Consensus 81 ~~~L~~~l~~~~~~~~~D~e~i~~~~~~~G~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe 160 (515)
+.+|+++|..+.|++.||+|+|+++|++||.+++++|+|+|||++||.++++++++||++|+|||||++..++.++||||
T Consensus 81 ~~eLr~~L~~~~f~t~sD~Evil~ly~~~G~~~~~~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyyg~~~~g~~~fASE 160 (578)
T PLN02549 81 HKELREKLKLHKFRTGSDCEVIAHLYEEHGEEFVDMLDGMFSFVLLDTRDNSFIAARDHIGITPLYIGWGLDGSVWFASE 160 (578)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhCCCceEEEEEECCCCEEEEEECCCCCCCeEEEEecCCeEEEEec
Confidence 99999999448899999999999999999999999999999999999998999999999999999998754678999999
Q ss_pred cccccccCCcceEeCCCeEEEecCCceEEeeCCCCCcCCCCCCCCcHHHHHHHHHHHHHHhhccccceEEeecCCcchHH
Q 010213 161 LKGLNDDCEHFEAFPPGHLYSSKSGGLKRWYNPTWYSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSL 240 (515)
Q Consensus 161 ~~~l~~~~~~i~~l~pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~ 240 (515)
+|+|...+++|+.|||||++.++.++..+||++.+.....++.++..++++++|.+||++|+.+|+|+|++||||+|||+
T Consensus 161 ~KaL~~~~~~I~~lpPGh~l~~~~~~~~~y~~~~~~~~~~~~~~~~~~~lr~~L~~aV~~rl~sdvpvgv~LSGGLDSSl 240 (578)
T PLN02549 161 MKALCDDCERFEEFPPGHYYSSKAGGFRRWYNPPWFSESIPSTPYDPLVLREAFEKAVIKRLMTDVPFGVLLSGGLDSSL 240 (578)
T ss_pred HHHHHHHhCCEEEeCCCeEEEEcCCCEEEEEecccCccccCCchhHHHHHHHHHHHHHHHHhccCCceeEeecCCccHHH
Confidence 99999999999999999999887667889999876543334445677899999999999999999999999999999999
Q ss_pred HHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHHHhCCCceEEEeChhHHHHHHHHHHHhhccCCCCcccc
Q 010213 241 VASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRA 320 (515)
Q Consensus 241 iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~ 320 (515)
|++++++...+......|+.+++|||+++++++|..+|+++|+++|++|+++.++.+++.+.+++++++++++++..++.
T Consensus 241 Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~D~~~Ar~vA~~lg~~h~ev~~~~~e~~~~l~~~i~~le~~dp~~~~~ 320 (578)
T PLN02549 241 VASIAARHLAETKAARQWGQQLHSFCVGLEGSPDLKAAREVADYLGTVHHEFHFTVQEGIDAIEDVIYHLETYDVTTIRA 320 (578)
T ss_pred HHHHHHHhhhhcccccccCCCceEEecCCCCCCHHHHHHHHHHHhCCCCeEEEEChHHHHHHHHHHHHHhcCCCCccchh
Confidence 99999987543211111224799999999999999999999999999999999999999999999999999987777778
Q ss_pred hHHHHHHHHHHHhCCCeEEEeccCccccccCCccccCCCChHHHHHHHHHHHHhhcccccccccccccccCceeccCCCC
Q 010213 321 STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLD 400 (515)
Q Consensus 321 ~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~~~~~~~~~~~~~~~~~~~~l~~~~l~r~d~~~~~~g~e~r~PflD 400 (515)
++++|++++.+++.|++|+|||+||||+|+||.+|+.+|+...|..++.++++.++..++.|.|+++|++|+|+|+||||
T Consensus 321 s~p~yll~r~a~~~gvkVvLsGeGaDElFgGY~~~~~ap~~~~~~~e~~~~~~~l~~~~l~r~Dr~~ma~glE~RvPFLD 400 (578)
T PLN02549 321 STPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYFHKAPNKEEFHKETCRKIKALHQYDCLRANKSTSAWGLEARVPFLD 400 (578)
T ss_pred HHHHHHHHHHHHhcCCEEEEecCchHhhhcChHhhhhCCCHHHHHHHHHHHHHHHhhhhccccchhhhhcCceEECCcCC
Confidence 89999999999999999999999999999999999888876668888888888888889999999999999999999999
Q ss_pred HHHHHHHHcCCccccccCCCCCcchhHHHHHhhccCCCCCCChhhhhcccCCCCCCCchhhHHHHHHHHHHhcChHHHHh
Q 010213 401 KDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKMVQN 480 (515)
Q Consensus 401 ~~lve~~~~lP~~~k~~~~~~~~~~K~lLR~a~~~~~~~~lP~~i~~R~K~~f~~~~~~~~~~~~~~~~~~~l~~~~l~~ 480 (515)
++||+++++||+++|+.++.++..+|||||+||++...++||++|+||+|.||+.|+++.|++.+++++++.++|+++++
T Consensus 401 ~~~v~~a~~ip~~~k~~~~~~~~~eK~iLR~a~~~~~~~~LP~~Il~R~K~~f~~~~g~~w~~~l~~~~~~~~~d~~~~~ 480 (578)
T PLN02549 401 KEFIDVAMSIDPEWKMIRPGEGRIEKWVLRKAFDDEEDPYLPKHILWRQKEQFSDGVGYSWIDGLKAHAEKHVSDEMFAN 480 (578)
T ss_pred HHHHHHHHhCCHHHHhcCCCCCCCchHHHHHHHhhcCcccCCHHHhCCCccCCCCCCcchHHHHHHHHHHHHcCHHHHHH
Confidence 99999999999999997622223589999999986222379999999999999999998999999999999999999999
Q ss_pred cCccCCCCCCChHHHHHHHHHHhhhCCCccc
Q 010213 481 AQYIFPHNTPLTKEAYYYRMIFERFFPQVIH 511 (515)
Q Consensus 481 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (515)
.....+.++|.|||.||||+||+++||+...
T Consensus 481 ~~~~~~~~~p~tke~~~yr~if~~~~p~~~~ 511 (578)
T PLN02549 481 ASFRYPHNTPTTKEAYYYRMIFEKHFPQDAA 511 (578)
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHHHCCCcch
Confidence 9999999999999999999999999998543
No 3
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=100.00 E-value=2.4e-109 Score=879.45 Aligned_cols=504 Identities=58% Similarity=1.022 Sum_probs=454.0
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEECCEEEEEeeeeecCCCCCCCceeeCCCcEEEEEeeEEcC
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYN 80 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nGei~n 80 (515)
||||+|+++.+.........+..|++.|+|||||++|++..++++|||+||+|+|++.+.||+.+.++++++++||||||
T Consensus 1 MCGI~g~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~lgh~RLsIid~~~g~QP~~~~~~~~~lv~NGEIyN 80 (554)
T PRK09431 1 MCGIFGILDIKTDADELRKKALEMSRLMRHRGPDWSGIYASDNAILGHERLSIVDVNGGAQPLYNEDGTHVLAVNGEIYN 80 (554)
T ss_pred CceEEEEEcCCCcchhHHHHHHHHHHHhhCCCCCcCCEEEeCCeEEEEEEeeecCCCCCCCCCCcCCCCEEEEEEEEEec
Confidence 99999999765433222467889999999999999999999999999999999998889999999999999999999999
Q ss_pred hHHHHHHh-cCCCccCCChHHHHHHHHHHHHHhhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEc
Q 010213 81 HEALRERL-TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISS 159 (515)
Q Consensus 81 ~~~L~~~l-~~~~~~~~~D~e~i~~~~~~~G~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faS 159 (515)
+.+|+++| ..+.|++.||+|+|+++|++||.+++++|+|+|||++||.++++++++||++|+|||||+...++.++|||
T Consensus 81 ~~eLr~~L~~~~~f~t~sD~Evil~ly~~~G~~~~~~L~G~FAf~i~D~~~~~l~laRD~~GikPLyy~~~~~~~~~faS 160 (554)
T PRK09431 81 HQELRAELGDKYAFQTGSDCEVILALYQEKGPDFLDDLDGMFAFALYDSEKDAYLIARDPIGIIPLYYGYDEHGNLYFAS 160 (554)
T ss_pred HHHHHHHHhccCCcCCCCHHHHHHHHHHHHHHHHHHhCCCceEEEEEECCCCEEEEEeCCCCCcceEEEEeCCCeEEEec
Confidence 99999999 45889999999999999999999999999999999999999999999999999999999886448899999
Q ss_pred CcccccccCCcceEeCCCeEEEecCCceEEeeCCCCCcC-CCCCCCCcHHHHHHHHHHHHHHhhccccceEEeecCCcch
Q 010213 160 ELKGLNDDCEHFEAFPPGHLYSSKSGGLKRWYNPTWYSE-AIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDS 238 (515)
Q Consensus 160 e~~~l~~~~~~i~~l~pG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDS 238 (515)
|+|+|...+++|++|||||++.+..++..+||++.+... ..++.++.+++++++|.+||++|+.+|+|||++||||+||
T Consensus 161 E~kaL~~~~~~I~~lpPGh~l~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~lr~~L~~aV~~rl~sdvpvGv~LSGGLDS 240 (554)
T PRK09431 161 EMKALVPVCKTIKEFPPGHYYWSKDGEFVRYYQRDWFDYDAVKDNVTDKNELRDALEAAVKKRLMSDVPYGVLLSGGLDS 240 (554)
T ss_pred chHHHHHhcCCEEEECCCeEEEECCCcEEEecCCCcccccccCCHHHHHHHHHHHHHHHHHHHhcCCCceEEEcCCCccH
Confidence 999999999999999999999887667889999876422 2233445678999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccc----ccccCCCceeeEEeecCCCChHHHHHHHHHHhCCCceEEEeChhHHHHHHHHHHHhhccCC
Q 010213 239 SLVASITARHLAGTK----AARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYD 314 (515)
Q Consensus 239 s~iaa~a~~~~~~~~----~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~~~~~~~e~~~ 314 (515)
|+|++++++...+.. ...+|..+++|||+++++++|..+|+++|+++|++||++.++.+++++.++++++++|+++
T Consensus 241 SlIaala~~~~~~~~~~~~~~~~~~~~l~tfsig~~~~~D~~~A~~vA~~lg~~h~~v~~t~~e~~~~l~~vi~~le~~d 320 (554)
T PRK09431 241 SLISAIAKKYAARRIEDDERSEAWWPQLHSFAVGLEGSPDLKAAREVADHLGTVHHEIHFTVQEGLDALRDVIYHLETYD 320 (554)
T ss_pred HHHHHHHHHhhcccccccccccccCCCceEEEEeCCCCChHHHHHHHHHHhCCccEEEEeCHHHHHHHHHHHHHHHhccC
Confidence 999999988753210 0112334799999999999999999999999999999999999999999999999999988
Q ss_pred CCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCccccCCCChHHHHHHHHHHHHhhcccccccccccccccCcee
Q 010213 315 VTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEA 394 (515)
Q Consensus 315 ~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~~~~~~~~~~~~~~~~~~~~l~~~~l~r~d~~~~~~g~e~ 394 (515)
++.+++++++|++++.+++.|++|+|||+||||+||||.+|+..|+...+..+..+++..++..++.|.|+++|++|+|+
T Consensus 321 p~~~~~~~p~yll~~~~~~~gvkvvLsGeGaDElFgGY~~~~~~p~~~~~~~e~~~~~~~l~~~~l~r~Dr~~ma~glE~ 400 (554)
T PRK09431 321 VTTIRASTPMYLMARKIKAMGIKMVLSGEGADELFGGYLYFHKAPNAKEFHEETVRKLRALHMYDCLRANKAMMAWGVEA 400 (554)
T ss_pred CccchhHHHHHHHHHHHHHcCCEEEEecCchhhhhcCchhhhhCCChhhcCHHHHHHHHHHHHHhhhccchhhhhcCcee
Confidence 77788889999999998888999999999999999999999877766667777888888888889999999999999999
Q ss_pred ccCCCCHHHHHHHHcCCccccccCCCCCcchhHHHHHhhccCCCCCCChhhhhcccCCCCCCCchhhHHHHHHHHHHhcC
Q 010213 395 RVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVT 474 (515)
Q Consensus 395 r~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~lLR~a~~~~~~~~lP~~i~~R~K~~f~~~~~~~~~~~~~~~~~~~l~ 474 (515)
|+||||++||+++++||+++|+.++. ..+|+|||+||++ +||++|+||+|.||+.|++..|++.++++++++++
T Consensus 401 RvPFLD~~lv~~a~~ip~~~K~~~~~--~~~K~iLR~a~~~----~LP~~I~~R~K~~f~~~~g~~w~~~l~~~~~~~~~ 474 (554)
T PRK09431 401 RVPFLDKEFLDVAMRINPEDKMCGNG--KMEKHILREAFEG----YLPESILWRQKEQFSDGVGYSWIDTLKEVAAEQVS 474 (554)
T ss_pred ecCcCCHHHHHHHHhCCHHHHhcCCC--CCCHHHHHHHHhh----hCCHHHhCCCCCCCCCCChhHHHHHHHHHHHHHhC
Confidence 99999999999999999999998521 2489999999999 99999999999999999998899989999999999
Q ss_pred hHHHHhcCccCCCCCCChHHHHHHHHHHhhhCCCcc
Q 010213 475 DKMVQNAQYIFPHNTPLTKEAYYYRMIFERFFPQVI 510 (515)
Q Consensus 475 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (515)
|+.+++.....+.++|.|||+||||+||+++||++.
T Consensus 475 ~~~~~~~~~~~~~~~~~~ke~~~y~~if~~~fp~~~ 510 (554)
T PRK09431 475 DQQLATARFRFPYNTPTTKEAYLYREIFEELFPLPS 510 (554)
T ss_pred cHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHCCchh
Confidence 999999998889999999999999999999999643
No 4
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=100.00 E-value=3.7e-109 Score=880.95 Aligned_cols=511 Identities=59% Similarity=1.048 Sum_probs=455.0
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEE-----CCEEEEEeeeeecCCCCCCCceeeCCCcEEEEEe
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH-----GDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVN 75 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~-----~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~n 75 (515)
||||+|+++...........+.+|++.|+|||||++|++.. +.+++||+||+|+|...+.||+.+++++++++||
T Consensus 1 MCGI~gi~~~~~~~~~~~~~~~~m~~~l~HRGPD~~g~~~~~~~~~~~~~lgh~RLsIvd~~~g~QP~~~~d~~~~lv~N 80 (586)
T PTZ00077 1 MCGILAIFNSKGERHELRRKALELSKRLRHRGPDWSGIIVLENSPGTYNILAHERLAIVDLSDGKQPLLDDDETVALMQN 80 (586)
T ss_pred CceEEEEEecCCchhhHHHHHHHHHHHHhCCCCCcCCEEEeccCCCCcEEEEeccceecCCCCCCCCcCCCCCCEEEEEE
Confidence 99999999765443222356788999999999999999985 5789999999999988899999999999999999
Q ss_pred eEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHHH-hhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEecC
Q 010213 76 GEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYGE-NFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLD 152 (515)
Q Consensus 76 Gei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G~-~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~ 152 (515)
|||||+.+|+++| .|+.|++.||+|+|+++|++||. +++++|+|+|||++||..+++++++||++|+|||||+...+
T Consensus 81 GEIYN~~eLr~~L~~~g~~f~t~sD~Evil~ly~~~G~~~~l~~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyy~~~~~ 160 (586)
T PTZ00077 81 GEIYNHWEIRPELEKEGYKFSSNSDCEIIGHLYKEYGPKDFWNHLDGMFATVIYDMKTNTFFAARDHIGIIPLYIGYAKD 160 (586)
T ss_pred EEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhCHHHHHHhcCCCEEEEEEECCCCEEEEEECCCCCcCeEEEEecC
Confidence 9999999999999 68999999999999999999999 99999999999999999999999999999999999987446
Q ss_pred cEEEEEcCcccccccCCcceEeCCCeEEEecC--CceEEeeCCCCCcC--CCCCCCCcHHHHHHHHHHHHHHhhccccce
Q 010213 153 GSIWISSELKGLNDDCEHFEAFPPGHLYSSKS--GGLKRWYNPTWYSE--AIPSTPYDPLVLRQAFENAVIKRLMTDVPF 228 (515)
Q Consensus 153 ~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~aV~~rl~~~~~v 228 (515)
+.++||||+|+|...+++|++|||||++.++. .+.++||+|.+... ..++.++..++++++|.+||++|+.+++|+
T Consensus 161 g~~~faSE~kaL~~~~~~I~~lpPGh~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~lr~~L~~AV~~rl~sdvpv 240 (586)
T PTZ00077 161 GSIWFSSELKALHDQCVEVKQFPPGHYYDQTKEKGEFVRYYNPNWHDFDHPIPTGEIDLEEIREALEAAVRKRLMGDVPF 240 (586)
T ss_pred CeEEEEecHHHHHHhcCCEEEeCCCcEEEecCCcceeEEecCCcccccccCCCCHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 78999999999999899999999999998864 35789999876532 123444567899999999999999999999
Q ss_pred EEeecCCcchHHHHHHHHHHhcccc--ccccCCCceeeEEeecCCCChHHHHHHHHHHhCCCceEEEeChhHHHHHHHHH
Q 010213 229 GVLLSGGLDSSLVASITARHLAGTK--AARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEV 306 (515)
Q Consensus 229 ~v~LSGGlDSs~iaa~a~~~~~~~~--~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~~~ 306 (515)
|++||||+|||+|++++++...+.. -.+.|..+++|||+++++++|..+|+++|+++|++|+++.++.++.++.++++
T Consensus 241 Gv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~l~tfsig~~~~~D~~~Ar~vA~~lg~~h~~i~~~~~e~~~~l~~~ 320 (586)
T PTZ00077 241 GLFLSGGLDSSIVAAIVAKLIKNGEIDLSKRGMPKLHSFCIGLEGSPDLKAARKVAEYLGTEHHEFTFTVEEGIDALPDV 320 (586)
T ss_pred EEEecCCchHHHHHHHHHHhhcccccccccccCCCceEEEcCCCCCchHHHHHHHHHHhCCcCcEEEECHHHHHHHHHHH
Confidence 9999999999999999998753210 00112247999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCccccCCCChHHHHHHHHHHHHhhccccccccccc
Q 010213 307 IYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIKALHQYDCLRANKS 386 (515)
Q Consensus 307 ~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~~~~~~~~~~~~~~~~~~~~l~~~~l~r~d~~ 386 (515)
++++|+|+.+.++.++++|++++.+++.|++|+|||+||||+||||.+|+.+|+...|..++.++++.++.+++.|.|++
T Consensus 321 i~~le~~~~~~~~~~~p~yll~r~a~~~gvkVvLsGeGaDElFgGY~~~~~ap~~~~~~~e~~~~l~~l~~~~l~r~Dr~ 400 (586)
T PTZ00077 321 IYHTETYDVTTIRASTPMYLLSRRIKALGIKMVLSGEGSDELFGGYLYFHKAPNREEFHRELVRKLHDLHKYDCLRANKA 400 (586)
T ss_pred HHHhcCCCCCCcchHHHHHHHHHHHHhcCCeEEEecCchhhhccCcHhhhhCcchHHHHHHHHHHHHHHhccCCchhhHH
Confidence 99999998777888999999999999999999999999999999999998777666677777777888888999999999
Q ss_pred ccccCceeccCCCCHHHHHHHHcCCccccccCCCCCcchhHHHHHhhccCCCCCCChhhhhcccCCCCCCCchhhHHHHH
Q 010213 387 TSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLK 466 (515)
Q Consensus 387 ~~~~g~e~r~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~lLR~a~~~~~~~~lP~~i~~R~K~~f~~~~~~~~~~~~~ 466 (515)
+|++|+|+|+||||++||+++++||+++|+.+..++..+|||||+||++..+++||++|+||+|.||+.|++..|++.++
T Consensus 401 ~ma~glE~RvPFLD~~~v~~a~~ip~~~K~~~~~~~~~~K~iLR~a~~~~~~~~LP~~I~~R~K~~F~~~~g~~w~~~l~ 480 (586)
T PTZ00077 401 TMAWGIEARVPFLDKDFLEYVMNIDPKYKMCNAFEGQMEKYILRKAFEGLEKPYLPDEILWRQKEQFSDGVGYSWIDGLK 480 (586)
T ss_pred HHhcCceeecCcCCHHHHHHHHhCCHHHhcCCCCCCCCCHHHHHHHHhccCcCcCCHHHhCCcccCCCCCCchhHHHHHH
Confidence 99999999999999999999999999999986211235899999999863234799999999999999999878999999
Q ss_pred HHHHHhcChHHHHhcCccCCCCCCChHHHHHHHHHHhhhCCCccc
Q 010213 467 AHAEQHVTDKMVQNAQYIFPHNTPLTKEAYYYRMIFERFFPQVIH 511 (515)
Q Consensus 467 ~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (515)
++++++++|+.+++.....+.++|.|||+||||+||+++||+...
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~p~tke~~~yr~if~~~~p~~~~ 525 (586)
T PTZ00077 481 EYAEKKISDQEFSQASFLFPYNTPRTKEAYLYRQIFSKHFPSDSA 525 (586)
T ss_pred HHHHHHhChHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHCCchhh
Confidence 999999999999999999999999999999999999999998654
No 5
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=100.00 E-value=3.6e-91 Score=750.09 Aligned_cols=465 Identities=29% Similarity=0.490 Sum_probs=392.1
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEECCEEEEEeeeeecCC-CCCCCceeeCCCcEEEEEeeEEc
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDP-ASGDQPLYNEDKKIVVTVNGEIY 79 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~~~l~h~rl~~~~~-~~~~qP~~~~~~~~~~~~nGei~ 79 (515)
||||+|++..++... ....+..|+++|+|||||++|+|..+++++||+||+|++. ..+.||+.+++++++++||||||
T Consensus 1 McGI~G~~~~~~~~~-~~~~~~~m~~~l~hRGPD~~g~~~~~~~~lgh~rl~i~~~~~~~~QP~~~~~~~~~~v~nGeiy 79 (589)
T TIGR03104 1 MCGICGEIRFDGQAP-DVAAVVRMLAVLAPRGPDAGGVHAQGPVALGHRRLKIIDLSEASQQPMVDAELGLALVFNGCIY 79 (589)
T ss_pred CcEEEEEEecCCCcc-hHHHHHHHHHhhcCCCCCcCCcEecCCEEEEEEeeEecCCCcCCCCCeECCCCCEEEEECCEec
Confidence 999999997654332 2467889999999999999999999999999999999987 46899999988999999999999
Q ss_pred ChHHHHHHh--cCCCccCCChHHHHHHHHHHHHHhhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEE
Q 010213 80 NHEALRERL--TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWI 157 (515)
Q Consensus 80 n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~f 157 (515)
|+.||+++| .|+.|.+.||+|+|+++|++||.+++++|+|+|||++||+.+++++++||++|+|||||+.. ++.++|
T Consensus 80 N~~eL~~~l~~~g~~f~~~sD~Evil~~y~~~G~~~~~~l~G~fa~~i~d~~~~~l~laRD~~G~kPLyy~~~-~~~~~f 158 (589)
T TIGR03104 80 NYRELRAELEALGYRFFSDGDTEVILKAYHAWGRDCVSRFNGMFAFAIWERDSGRLLLARDRLGIKPLYYAED-AGRLRF 158 (589)
T ss_pred CHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHHHHHHHhhcceEEEEEeCCCCEEEEEecCCCCCCeEEEEe-CCEEEE
Confidence 999999999 68899999999999999999999999999999999999999999999999999999999885 778999
Q ss_pred EcCccccccc----------------------------CCcceEeCCCeEEEec-CCc--eEEeeCCCCCcC---CCCCC
Q 010213 158 SSELKGLNDD----------------------------CEHFEAFPPGHLYSSK-SGG--LKRWYNPTWYSE---AIPST 203 (515)
Q Consensus 158 aSe~~~l~~~----------------------------~~~i~~l~pG~~~~~~-~~~--~~~~~~~~~~~~---~~~~~ 203 (515)
|||+++|+.. +++|++|||||++.++ ++. ..+||++..... ...+.
T Consensus 159 aSe~kaLl~~~~~~~~~d~~~l~~~l~~~~~~~~~~T~~~gI~~l~pG~~l~i~~~~~~~~~~yw~~~~~~~~~~~~~~~ 238 (589)
T TIGR03104 159 ASSLPALLAAGGVDTDIDPVALHHYLTFHAVVPAPHTILKGVRKLPPATWMTVEPDGSRTQRSYWSLDAGRPADDAARTE 238 (589)
T ss_pred EeCHHHHHhCCCCCCCcCHHHHHHHHHhcCCCCCCCchhhCceeeCCCcEEEEECCCCeEEEeeccCCCCcccccCCCCH
Confidence 9999988642 3689999999999885 333 568999764321 11233
Q ss_pred CCcHHHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCC-----ChHHHH
Q 010213 204 PYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS-----PDLKYA 278 (515)
Q Consensus 204 ~~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~-----~d~~~A 278 (515)
++.+++++++|.+||++|+.+++|||++||||+|||+|++++++.. ..++.|||++++++ +|..+|
T Consensus 239 ~~~~~~l~~~L~~AV~~rl~sd~pvg~~LSGGlDSs~Iaa~~~~~~---------~~~l~tftigf~~~~~~~~dE~~~A 309 (589)
T TIGR03104 239 ADWQDAILEALRLAVKRRLVADVPVGVLLSGGLDSSLIVGLLAEAG---------VDGLRTFSIGFEDVGGEKGDEFEYS 309 (589)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCceeEEecCCccHHHHHHHHHHhc---------CCCceEEEEEecCCCCCCCChHHHH
Confidence 4456889999999999999999999999999999999999988754 24699999999753 799999
Q ss_pred HHHHHHhCCCceEEEeChhHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCccccCC
Q 010213 279 KEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKA 358 (515)
Q Consensus 279 ~~va~~lg~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~~~~ 358 (515)
+++|+++|++|+++.++++++.+.+++++++.+.|.. ..+.+++|++++.+++ +++|+|||+||||+||||.+|...
T Consensus 310 ~~vA~~~g~~h~~i~~~~~~~~~~l~~~v~~~~~P~~--~~~~~~~~~l~~~a~~-~~kV~LsGeGaDElFgGY~~~~~~ 386 (589)
T TIGR03104 310 DIIAERFHTRHHKIRIPNHRVLPALPEAVAAMSEPMV--SHDCVAFYLLSEEVSK-HVKVVQSGQGADEVFGGYHWYPPL 386 (589)
T ss_pred HHHHHHhCCcCeEEEcCHHHHHHHHHHHHHHhCCCCC--CchHHHHHHHHHHHhC-CCeEEeecCchHhcccCcHhHHHH
Confidence 9999999999999999999999999999998876642 2345778888887765 699999999999999999876421
Q ss_pred ------CCh-----------HHHH----H---------HH-------------HHHH-----Hh-hcccccccccccccc
Q 010213 359 ------PNK-----------EEFH----R---------ET-------------CHKI-----KA-LHQYDCLRANKSTSA 389 (515)
Q Consensus 359 ------~~~-----------~~~~----~---------~~-------------~~~~-----~~-l~~~~l~r~d~~~~~ 389 (515)
|.. ..+. . +. +.++ +. +....|.+.|+++|+
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~l~~~~L~~~Dr~sMa 466 (589)
T TIGR03104 387 AAGAGDPVAAYRRAFFDRDHAEYLEMVGPRFHAEDVSGEFVADHFARPGADTAVDQALRLDTTVMLVDDPVKRVDNMTMA 466 (589)
T ss_pred HhhccCchHHHHHHHhccCHHHHHHHhhhhhhccchhHHHHHHHhhcccCCCHHHHHHHHHHHHhCccccccchhhhhhh
Confidence 100 0000 0 00 0000 00 011135679999999
Q ss_pred cCceeccCCCCHHHHHHHHcCCccccccCCCCCcchhHHHHHhhccCCCCCCChhhhhcccCCCCCCCchhhHH-HHHHH
Q 010213 390 WGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWID-GLKAH 468 (515)
Q Consensus 390 ~g~e~r~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~lLR~a~~~~~~~~lP~~i~~R~K~~f~~~~~~~~~~-~~~~~ 468 (515)
+|+|+|+||||++|||||++||+++|+.++ +|+|||+++++ +||++|++|+|+||+.|.+ .|++ .++++
T Consensus 467 ~svE~R~PFLD~~lve~a~~lP~~~k~~~~-----~K~iLR~a~~~----~lP~~i~~R~K~gf~~P~~-~w~~~~l~~~ 536 (589)
T TIGR03104 467 WGLEARVPFLDHELVELAARIPPELKLADG-----GKGVLKEAARG----VIPSEVIDRPKGYFPVPAL-KYLRGPFLEW 536 (589)
T ss_pred ccccccCCccCHHHHHHHHhCCHHHhcCCC-----cCHHHHHHHhh----hCCHHHhCCCCCCCCCcHH-HHhhhHHHHH
Confidence 999999999999999999999999999863 69999999999 9999999999999999987 8987 68999
Q ss_pred HHHhcChHHHHhcCccCCCCC
Q 010213 469 AEQHVTDKMVQNAQYIFPHNT 489 (515)
Q Consensus 469 ~~~~l~~~~l~~~g~~~~~~~ 489 (515)
++++++++.+...|++|+..+
T Consensus 537 ~~~~l~~~~~~~~~~~~~~~v 557 (589)
T TIGR03104 537 VRDALTSPAARERGLFQRAYV 557 (589)
T ss_pred HHHHhCccchhhcCccCHHHH
Confidence 999999888888889987643
No 6
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=100.00 E-value=3.4e-86 Score=721.60 Aligned_cols=467 Identities=31% Similarity=0.525 Sum_probs=387.0
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEECCEEEEEeeeeecCCCCCCCceeeCCCcEEEEEeeEEcC
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYN 80 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nGei~n 80 (515)
||||+|+++.++........+..|++.|.|||||++|+|..+++++||+|++|++...+.||+.+++++++++|||||||
T Consensus 1 McGI~G~~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~~~~~lgh~rl~i~d~~~~~qP~~~~~~~~~lv~nGei~N 80 (628)
T TIGR03108 1 MCGITGIFDLTGQRPIDRDLLRRMNDAQAHRGPDGGGVHVEPGIGLGHRRLSIIDLSGGQQPLFNEDGSVVVVFNGEIYN 80 (628)
T ss_pred CCEEEEEEECCCCccccHHHHHHHHHHhcCCCCCccCeEeeCCEEEEEEeeeecCCCCCCCCcCcCCCCEEEEECCeECC
Confidence 99999999755432112356889999999999999999999999999999999998779999999999999999999999
Q ss_pred hHHHHHHh--cCCCccCCChHHHHHHHHHHHHHhhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEE
Q 010213 81 HEALRERL--TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWIS 158 (515)
Q Consensus 81 ~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~fa 158 (515)
+.||+++| .|+.|.+.||+|+|+++|++||.+++++|+|+|||++||..+++++++||++|+|||||+...++.++||
T Consensus 81 ~~eL~~~l~~~g~~~~~~sD~Evi~~~~~~~g~~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~PLyy~~~~~~~~~fa 160 (628)
T TIGR03108 81 FQELVAELQALGHVFRTRSDTEVIVHAWEEWGEACVERFRGMFAFALWDRNQETLFLARDRLGIKPLYYALLADGWFIFG 160 (628)
T ss_pred HHHHHHHHHhcCCccCCCChHHHHHHHHHHHHHHHHHHcCCCEEEEEEECCCCEEEEEECCCCCcceEEEEeCCCEEEEE
Confidence 99999999 6889999999999999999999999999999999999999999999999999999999986446679999
Q ss_pred cCccccccc---------------------------CCcceEeCCCeEEEecCC----ceEEeeCCCCCcCCCCCCCCcH
Q 010213 159 SELKGLNDD---------------------------CEHFEAFPPGHLYSSKSG----GLKRWYNPTWYSEAIPSTPYDP 207 (515)
Q Consensus 159 Se~~~l~~~---------------------------~~~i~~l~pG~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 207 (515)
||+++|... +++|++|+|||++.++.+ +.++||++...+....+.++.+
T Consensus 161 Se~~al~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~gI~~l~pG~~l~~~~~~~~~~~~~yw~~~~~~~~~~~~~e~~ 240 (628)
T TIGR03108 161 SELKALTAHPSLPRELDPLAVEDYFAYGYVPDPRTIFKGVKKLEPGHTLTLRRGAPPARPRCYWDVSFAPAAPLSEADAL 240 (628)
T ss_pred ecHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCCCchhcCcEEECCCeEEEEECCCcceeccccccCCCCCCCCCCHHHHH
Confidence 999988542 478999999999988633 2467998764322222345567
Q ss_pred HHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHHHHHHh
Q 010213 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYL 285 (515)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~va~~l 285 (515)
++++++|.+||+.|+.+++|||++||||+|||+|++++++.. ..+++|||+++++ .+|..+|+++|+++
T Consensus 241 e~l~~~l~~aV~~rl~~d~~vg~~LSGGlDSs~Iaa~~~~~~---------~~~i~t~s~~~~~~~~dE~~~A~~vA~~~ 311 (628)
T TIGR03108 241 AELIERLREAVRSRMVADVPLGAFLSGGVDSSAVVALMAGLS---------DTPVNTCSIAFDDPAFDESAYARQVAERY 311 (628)
T ss_pred HHHHHHHHHHHHHHHhcCCcceEeecCCccHHHHHHHHHHhc---------CCCCcEEEEecCCCCCChHHHHHHHHHHh
Confidence 899999999999999999999999999999999999988754 2479999999875 48999999999999
Q ss_pred CCCceEEEeChhHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCccccCC-------
Q 010213 286 GTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKA------- 358 (515)
Q Consensus 286 g~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~~~~------- 358 (515)
|++|+++.+++++ .+.++.+++..+.|.. ..+..+.+.+++.+++ +++|+|||+||||+|+||.+|...
T Consensus 312 g~~h~~~~~~~~~-~~~~~~~~~~~~~P~~--~~~~~~~~~~~~~a~~-~~kV~LsG~GgDElf~GY~~~~~~~~~~~~~ 387 (628)
T TIGR03108 312 GTNHRVETVDPDD-FSLVDRLAGLYDEPFA--DSSALPTYRVCELARK-RVTVALSGDGGDELFAGYRRYRWHMAEERVR 387 (628)
T ss_pred CCCCeEEecCHHH-HHHHHHHHHHhCCCCC--CchHHHHHHHHHHHHC-CCCEEEeccchhhcccCcHHHHHHHHHHHHh
Confidence 9999999998877 5677777776665532 2345677888887755 799999999999999999754310
Q ss_pred ---C----------------Ch--------H--H-----------H-H------HHHHHH-----------------H-H
Q 010213 359 ---P----------------NK--------E--E-----------F-H------RETCHK-----------------I-K 373 (515)
Q Consensus 359 ---~----------------~~--------~--~-----------~-~------~~~~~~-----------------~-~ 373 (515)
+ .. . . + . .+.... + .
T Consensus 388 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 467 (628)
T TIGR03108 388 GILPLGLRRPLFGTLGRLYPKADWAPRMLRAKTTFQALARDPLEGYFHSVSVLDNALRRQLFSPDFRRELQGYRAIEVLR 467 (628)
T ss_pred hhCCHHHHHHHHHHHHhhCcccccchhhhhhhhhHhhhhcchHHHHHHHhhhcChHHHHHHHHHHhhhhcccCCHHHHHH
Confidence 0 00 0 0 0 0 000000 0 0
Q ss_pred hh----c------------------ccccccccccccccCceeccCCCCHHHHHHHHcCCccccccCCCCCcchhHHHHH
Q 010213 374 AL----H------------------QYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRK 431 (515)
Q Consensus 374 ~l----~------------------~~~l~r~d~~~~~~g~e~r~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~lLR~ 431 (515)
.. . ...+.+.|+++|++|+|+|+||||++|||||++||+++|+.++. +|+|||+
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~l~~~lL~~~Dr~sMa~svE~R~PFLD~~lve~a~slP~~~k~~~~~----~K~iLR~ 543 (628)
T TIGR03108 468 RHAARAPTDDALSLAQYLDLKTYLPGDILTKVDRASMAHGLEVRVPLLDHRLVEWAAGLPPDLKLRGGE----GKYLLKK 543 (628)
T ss_pred HHhccccCCCHHHHHHHHHHHHhCccccccccCccchhccccccCCCCCHHHHHHHHhCCHHHhcCCCC----chHHHHH
Confidence 00 0 00134579999999999999999999999999999999998875 8999999
Q ss_pred hhccCCCCCCChhhhhcccCCCCCCCchhhHH-HHHHHHHHhcChHHHHhcCccCCCCC
Q 010213 432 AFDDEERPYLPKHVLYRQKEQFSDGVGYSWID-GLKAHAEQHVTDKMVQNAQYIFPHNT 489 (515)
Q Consensus 432 a~~~~~~~~lP~~i~~R~K~~f~~~~~~~~~~-~~~~~~~~~l~~~~l~~~g~~~~~~~ 489 (515)
||++ +||++|++|+|+||+.|.. .|++ .+++++++++.++.+.+.|++|+..+
T Consensus 544 a~~~----~LP~~I~~R~K~gF~~p~~-~w~~~~l~~~~~~~l~~~~~~~~g~~d~~~v 597 (628)
T TIGR03108 544 AMRP----YLPDDVLYRPKMGFSVPLA-AWFRGPLRERVRTLVLGETLAETGLFDPAFI 597 (628)
T ss_pred HHHh----hCCHHHhCCCCCCCCCCHH-HHhccHHHHHHHHHhChhhhhhcCCcCHHHH
Confidence 9999 9999999999999999987 8986 58899999999999988999987643
No 7
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=100.00 E-value=2.6e-84 Score=684.26 Aligned_cols=429 Identities=45% Similarity=0.754 Sum_probs=367.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceE-EECCEEEEEeeeeecCCCCCCCceeeCCCcEEEEEeeEEcChH
Q 010213 4 ILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLY-QHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYNHE 82 (515)
Q Consensus 4 I~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~-~~~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nGei~n~~ 82 (515)
|+|++..++......+.+..|++.|+|||||++|+| ..+++++||+||+|+|.+.+.||+.+.+++++++|||||||+.
T Consensus 1 i~g~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~~lgh~rl~i~d~~~~~qP~~~~~~~~~lv~nGeiyN~~ 80 (467)
T TIGR01536 1 IAGFFDLDDKAVEEDEAILRMSDTIAHRGPDASGIEYKDGNAILGHRRLAIIDLSGGAQPMSNEGKTYVIVFNGEIYNHE 80 (467)
T ss_pred CEEEEecCCcchhhHHHHHHHHHHhhCcCCCcCCcEEccCCEEEEEEEeEEeCCCCCCCeeECCCCCEEEEEeeEEcCHH
Confidence 688888776544334578999999999999999999 8889999999999999877899999999999999999999999
Q ss_pred HHHHHh--cCCCccCCChHHHHHHHHHHHHHhhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcC
Q 010213 83 ALRERL--TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSE 160 (515)
Q Consensus 83 ~L~~~l--~~~~~~~~~D~e~i~~~~~~~G~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe 160 (515)
+|+++| .|+.|.+.||+|+|+++|++||.+++++++|+|||++||+++++++++||++|+|||||+.. ++.++||||
T Consensus 81 eL~~~l~~~g~~~~~~~D~e~il~~y~~~g~~~~~~l~G~fa~~i~D~~~~~l~laRD~~G~kPLyy~~~-~~~~~faSe 159 (467)
T TIGR01536 81 ELREELEAKGYTFQTDSDTEVILHLYEEWGEECVDRLDGMFAFALWDSKKGELFLARDRFGIKPLYYAYD-GGQLYFASE 159 (467)
T ss_pred HHHHHHHhcCCccCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCEEEEEECCCCCcCeEEEEE-CCEEEEEec
Confidence 999999 68999999999999999999999999999999999999999999999999999999999985 788999999
Q ss_pred ccccccc----------------------------CCcceEeCCCeEEEecCCc---eEEeeCCCCCcCCCCCCCCcHHH
Q 010213 161 LKGLNDD----------------------------CEHFEAFPPGHLYSSKSGG---LKRWYNPTWYSEAIPSTPYDPLV 209 (515)
Q Consensus 161 ~~~l~~~----------------------------~~~i~~l~pG~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 209 (515)
+++|... +++|++|+||+++.++.++ .++||.+. .....+.++.+++
T Consensus 160 ~kaL~~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~~I~~l~pG~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~e~ 237 (467)
T TIGR01536 160 IKALLAHPRNIKPFPDGAALAPGFGFVRVPPPSTFFRGVFELEPGHDLPLEDDGLNIERYYWERR--DEHTDSEEDLVDE 237 (467)
T ss_pred HHHHHhccccCcCCCCHHHHHHHhccCccCCCCcccCCcEEcCCCeEEEEeCCCceEEEEecCCC--CCCCCCHHHHHHH
Confidence 9987531 4789999999999886432 34566522 1122234456789
Q ss_pred HHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC---CChHHHHHHHHHHhC
Q 010213 210 LRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG---SPDLKYAKEVADYLG 286 (515)
Q Consensus 210 l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~---~~d~~~A~~va~~lg 286 (515)
++++|.+||++|+.++.|+|++||||+|||+|++++++...+ .++.+||+++++ .+|..+|+++|+++|
T Consensus 238 l~~~l~~aV~~r~~~~~~vg~~LSGGlDSs~iaa~a~~~~~~--------~~~~~~t~~~~~~~~~~E~~~A~~vA~~lg 309 (467)
T TIGR01536 238 LRSLLEDAVKRRLVADVPVGVLLSGGLDSSLVAAIARREAPR--------GPVHTFSIGFEGSPDFDESPYARKVADHLG 309 (467)
T ss_pred HHHHHHHHHHHHhccCCceEEEecCChhHHHHHHHHHHhcCC--------CCceEEEEecCCCCCCChHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999876421 368999998873 368889999999999
Q ss_pred CCceEEEeChhHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCccccCCCChHHHHH
Q 010213 287 TVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHR 366 (515)
Q Consensus 287 ~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~~~~~~~~~~~~ 366 (515)
++|+++.++++++.+.+++.++..+.|. ...+..+.+.+++.+++.|++|+|||+||||+|+||+++...+....+.+
T Consensus 310 ~~~~~i~~~~~~~~~~~~~~v~~~~~p~--~~~~~~~~~~l~~~a~~~G~~vlltG~GaDElf~GY~~~~~~~~~~~~~~ 387 (467)
T TIGR01536 310 TEHHEVLFSVEEGLDALPEVIYHLEDPT--TIRASIPLYLLSKLAREDGVKVVLSGEGADELFGGYLYFHEAPAAEALRE 387 (467)
T ss_pred CcCeEEECCHHHHHHHHHHHHHhhCCCC--CCchHHHHHHHHHHHHhcCCEEEEecCcchhcccCchhhhhccccHHHHH
Confidence 9999999999998889999988877543 34456788899999999999999999999999999998875543333322
Q ss_pred HHH-HHHHhhcccccccccccccccCceeccCCCCHHHHHHHHcCCccccccCCCCCcchhHHHHHhhccCCCCCCChhh
Q 010213 367 ETC-HKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHV 445 (515)
Q Consensus 367 ~~~-~~~~~l~~~~l~r~d~~~~~~g~e~r~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~lLR~a~~~~~~~~lP~~i 445 (515)
+.. ..++.....++++.|+++|++|+|+|+||||++|||||++||.++|+.++. +|+|||++|++ +||++|
T Consensus 388 ~~~~~~~~~~l~~~l~~~dr~~ma~gvE~R~PflD~~lv~~a~~lp~~~k~~~~~----~K~iLR~a~~~----~lP~~i 459 (467)
T TIGR01536 388 ELQYLDLELYMPGLLRRKDRMSMAHSLEVRVPFLDHELVEYALSIPPEMKLRDGK----EKYLLREAFEG----YLPEEI 459 (467)
T ss_pred HHHHHHHHHhCcccchhHHHHHhhccccccCCcCCHHHHHHHHhCCHHHhcCCCC----cHHHHHHHHhh----hCCHHH
Confidence 222 234444455677789999999999999999999999999999999998765 89999999999 999999
Q ss_pred hhcccCCC
Q 010213 446 LYRQKEQF 453 (515)
Q Consensus 446 ~~R~K~~f 453 (515)
++|+|.||
T Consensus 460 ~~R~K~gf 467 (467)
T TIGR01536 460 LWRKKEGF 467 (467)
T ss_pred hcCCCCCC
Confidence 99999987
No 8
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=6.3e-84 Score=682.59 Aligned_cols=485 Identities=38% Similarity=0.626 Sum_probs=394.5
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEECCEEEEEeeeeecCCCCCCCceeeCCCcEEEEEeeEEcC
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYN 80 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nGei~n 80 (515)
||||+|+++.++... ....+.+|.+.|.|||||.+|+|...++.+||+||+|+|..++.||+.+.+++++++|||||||
T Consensus 1 MCGI~g~~~~~~~~~-~~~~~~~m~~~l~hRGPD~~g~~~~~~~~~gh~rL~i~d~~~g~QP~~~~~~~~~l~~NGEIYN 79 (542)
T COG0367 1 MCGIAGILNFKNLID-AKSIIEEMTKLLRHRGPDDSGVWISLNALLGHRRLSIVDLSGGRQPMIKEGGKYAIVYNGEIYN 79 (542)
T ss_pred CCceeeeeccccccc-chHHHHHHHHHhhccCCCccccEecCCceeeeeEEEEeccccCCCCcccCCCcEEEEECCEeee
Confidence 999999999763222 2567899999999999999999999999999999999998889999999788899999999999
Q ss_pred hHHHHHHh--cCCCccCCChHHHHHHHHHHHHHhhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEE
Q 010213 81 HEALRERL--TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWIS 158 (515)
Q Consensus 81 ~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~fa 158 (515)
+.||+++| .|+.|.|.||||+|+++|++||.+++++|+|+|||++||..+++|+++|||+|+|||||+.. ++.++||
T Consensus 80 ~~elr~~l~~~g~~f~t~sDtEvil~~y~~~g~~~~~~l~G~fAfai~d~~~~~l~laRD~~GikPLyy~~~-~~~l~fa 158 (542)
T COG0367 80 VEELRKELREAGYEFRTYSDTEVILTLYEEWGEDCVEHLNGMFAFAIYDETRQKLFLARDPFGVKPLYYTSK-NENLAFA 158 (542)
T ss_pred HHHHHHHHHhcCceeccccchHHHHHHHHHHHHHHHHHhccceEEEEEECCCCEEEEEecCCCccccEEEec-CCceEEE
Confidence 99999999 59999999999999999999999999999999999999999999999999999999999985 6679999
Q ss_pred cCccccccc-----CCcceEeCCCeEEEecCCc-eEEeeCCCCCcCCCCCCCCcHHHHHHHHHHHHHHhhccccceEEee
Q 010213 159 SELKGLNDD-----CEHFEAFPPGHLYSSKSGG-LKRWYNPTWYSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLL 232 (515)
Q Consensus 159 Se~~~l~~~-----~~~i~~l~pG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aV~~rl~~~~~v~v~L 232 (515)
||+|+|... +++|++|+|||++.++.++ +.+||.+.+.... .+.++..++++++|.++|++|+++++|+|++|
T Consensus 159 SE~Kal~~~~~~~~~~~i~~l~pg~~l~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~l~~~l~~sV~~r~~advpvg~~l 237 (542)
T COG0367 159 SEIKALLAHPVVRFLRDIKELPPGHLLEFTDGGLIRRYWRLSEKTSK-ESADELAEHLRSLLEDAVKRRLVADVPVGVFL 237 (542)
T ss_pred echhhhhhCCcccccCCeEEcCCCcEEEEcCCCceeeeecccccccc-cchHHHHHHHHHHHHHHHHHHhccCCcEEEEe
Confidence 999999999 9999999999999998666 8999998765433 34556688999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCC--hHHHHHHHHHHhCCCceEEEeChhHHHHHHHHHHHhh
Q 010213 233 SGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSP--DLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHV 310 (515)
Q Consensus 233 SGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~--d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~~~~~~~ 310 (515)
|||+|||+|++++++.... ....+||+++++++ |.++|+++|+.+|++|+.+.++++++.+.+++++++.
T Consensus 238 SGGlDSS~Iaa~a~~~~~~--------~~~~~fsvg~~~~~~~D~~~a~~~A~~lg~~h~~~~~~~~e~~~~~~~vv~~~ 309 (542)
T COG0367 238 SGGLDSSLIAAIAAEELGK--------EGKTTFTVGFEDSDSPDAKYARAVAKFLGTPHHEIILTNEELLNALPEVVKAL 309 (542)
T ss_pred CCCccHHHHHHHHHHhccc--------cceeeeEeecCCCCCchHHHHHHHHHHhCCCcEEEeecHHHHHHHHHHHHhhc
Confidence 9999999999999988632 12235999999874 9999999999999999999999999999999999999
Q ss_pred ccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCC-ccccCCCChHHH-HHHHHHHHHhhccccccccccccc
Q 010213 311 ETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGY-LYFHKAPNKEEF-HRETCHKIKALHQYDCLRANKSTS 388 (515)
Q Consensus 311 e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy-~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~r~d~~~~ 388 (515)
+.|.. +...+++|++++.+++.|.+|+|||+||||+|||| ++....+..... .+++.+++......++.|.+++++
T Consensus 310 ~~p~~--~~~~~ply~~~~~a~~~g~kVvLSGeGADElFgGY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~ 387 (542)
T COG0367 310 DTPGG--MAASIPLYLLSRKARAEGEKVVLSGEGADELFGGYPPYSRFAPGPEELLNEALRRALALIDYNRLARDDRVAA 387 (542)
T ss_pred CCCCc--ccchhHHHHHHHhhhhcCcEEeecCccHHHHhcCCchhhhhccchHHHHHHHHHhhhhhhhhhhhhhhhhhhh
Confidence 98875 56788999999999999999999999999999999 454444444333 333444443333333577889999
Q ss_pred ccCceeccCCCCHHHHHHHHcCCccccccCCCCCcchhHHHHHhhccCCCCC--CChhhhhcccCCCCCCCchhhHHHHH
Q 010213 389 AWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPY--LPKHVLYRQKEQFSDGVGYSWIDGLK 466 (515)
Q Consensus 389 ~~g~e~r~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~lLR~a~~~~~~~~--lP~~i~~R~K~~f~~~~~~~~~~~~~ 466 (515)
++++|.|.||+|.+++++++++|++.++..+ +....|.++|-++.+ . +|++|.++.|+.++.+.+..+
T Consensus 388 ~~~~E~r~p~ld~~~~~l~l~~~~~~~i~~~-~~m~~~le~Rvpf~~----~~~l~~~i~~~~K~~~~~gk~~lr----- 457 (542)
T COG0367 388 AFGVEARVPFLDRELVDLALKIPPEHKLNRD-RSMAKKLERRVPFSD----GVELPEEIPWREKIAFGYGKGILR----- 457 (542)
T ss_pred hcccccccCchHHHHHHHHhcCCcccccchh-hhhhhhhheeccccc----chhhHhhCChhhhhhcCCcchhhH-----
Confidence 9999999999999999999999999888764 111245555666665 5 777777777777666544222
Q ss_pred HHHHHhcChHHHHhc--CccCC---CCCCChHHHHHHHHHHhhhCCC
Q 010213 467 AHAEQHVTDKMVQNA--QYIFP---HNTPLTKEAYYYRMIFERFFPQ 508 (515)
Q Consensus 467 ~~~~~~l~~~~l~~~--g~~~~---~~~~~~~~~~~~~~~~~~~~~~ 508 (515)
...+..+.+..+... ++--+ ...+..++.|.+..++.+++|.
T Consensus 458 ~~~~~~~p~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (542)
T COG0367 458 IAYEKILPDFILSRKKLGFPKPLWGRYYENSLLLWLYRLIEEEFSPE 504 (542)
T ss_pred hhhhccCcHHHhcccccCCCcccccccccchHHHHHHHHHhhhcccc
Confidence 222222222222111 11111 1123466777777777776653
No 9
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-44 Score=352.33 Aligned_cols=430 Identities=23% Similarity=0.293 Sum_probs=297.0
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEECC----EEEEEeeeeecCCCCCCCceeeCCCcEEEEEee
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGD----FYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNG 76 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~----~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nG 76 (515)
||||+-.+..+..-. ....-..|...+..||||.++....+. +.++-.-|...| ....||+... .++++.|||
T Consensus 1 MCGI~~s~~~~~~l~-~~~i~~~l~~~~~~rg~d~~~~v~~~~~~y~~~f~~~vL~lrG-~~t~Qpvv~d-~~~vfl~NG 77 (520)
T KOG0573|consen 1 MCGIFLSVDKDLALN-SELISEALGLLIGNRGPDHSSKVCTDGKPYIVLFESSVLSLRG-YLTKQPVVED-DRYVFLFNG 77 (520)
T ss_pred CceEEEeecCCcccc-ccchhhHHHHHhhccCCCchhhhhhcccceeEEeecceEEEee-eeccCceecc-cceEEEecc
Confidence 999999988765422 234456777788999999877654432 333333355554 2346998754 448999999
Q ss_pred EEcChHHHHHHhcCCCccCCChHHHHHHHHHHHH-----HhhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEec
Q 010213 77 EIYNHEALRERLTNHKFRTGSDCDVIAHLYEEYG-----ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGL 151 (515)
Q Consensus 77 ei~n~~~L~~~l~~~~~~~~~D~e~i~~~~~~~G-----~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~ 151 (515)
||||.. ...+..|+.+|+..+...+ .+.++.++|.|++++||.+.++||+.||++|+|.|-|....
T Consensus 78 eIyn~~---------~s~~~~d~~~l~~~l~~~~e~~~Il~~i~~~qGp~~~iyY~~~~~~LyfgRD~~GRrSLly~~~~ 148 (520)
T KOG0573|consen 78 EIYNGE---------KSDTLFDTDILAEELSNLKESGDILDIIKSLQGPWAFIYYDVRSDKLYFGRDDIGRRSLLYSLDP 148 (520)
T ss_pred eeccCC---------CccccchHHHHHHHHhcCCccccHHHHHHhccCCceEEEEEccCcEEEEecccccceeeeEEecc
Confidence 999954 2345669999988887654 56788899999999999999999999999999999999864
Q ss_pred CcEEEEEcCcccccccCCcceEeCCCeEEEecCCceEEeeCCCCCc---CCCCCC-------------CCcHHHHHHHHH
Q 010213 152 DGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLKRWYNPTWYS---EAIPST-------------PYDPLVLRQAFE 215 (515)
Q Consensus 152 ~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------~~~~~~l~~~l~ 215 (515)
.+..++.|.... ..+.|++|||+-.....+.-...|.+..... .+.+.. .+.+..+.+.+.
T Consensus 149 ~~f~~~~st~g~---~~~~i~e~~~~F~~~~~d~~~w~y~s~~le~~~~~s~~p~~~i~~~~l~~~~~~~~v~~l~~~l~ 225 (520)
T KOG0573|consen 149 FNFSLVLSTVGT---SGKLIYEVPPVFRNKLTDRVPWPYLSTKLENSLGPSLPPLCDISEIFLNQSHRSEVVSGLHTGLR 225 (520)
T ss_pred CceeEEeecccc---CCccccccCchhhhccCCccccccccceecccCCCcCCCccchHHHHhhhHHHHHHHhhhHHHHH
Confidence 443333332111 1234668899833222211111111100000 011111 112234555666
Q ss_pred HHHHHhhc---------------cccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC---C-----C
Q 010213 216 NAVIKRLM---------------TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE---G-----S 272 (515)
Q Consensus 216 ~aV~~rl~---------------~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~---~-----~ 272 (515)
++++.|.. ...+|+|++|||+||++||.++....+.. .+|..+++.|. + .
T Consensus 226 ds~k~rvl~i~~rl~~~i~~~c~~~s~VcVlfSGGvDs~vvA~l~h~~vp~n-------e~IdLINVaF~n~e~~~~~~~ 298 (520)
T KOG0573|consen 226 DSLKDRVLVIPPRLCANILLRCIHESNVCVLFSGGVDSTVVAVLAHYVVPEN-------EPIDLINVAFGNPEGSKEQNV 298 (520)
T ss_pred HHHhhhhhccChhHhhhccccccccCcEEEEecCCchHHHHHHHHHhhcCCC-------CceeEEEeeccCCCcccccCC
Confidence 77766532 13689999999999999999999987654 57888887773 2 2
Q ss_pred ChHHHHHHHHHHhCC-------CceEEEeChhHHHHHHHHHHHhhccCCCCc--ccchHHHHHHHH---------HHHhC
Q 010213 273 PDLKYAKEVADYLGT-------VHHEFHFTVQDGIDAIEEVIYHVETYDVTT--IRASTPMFLMSR---------KIKSL 334 (515)
Q Consensus 273 ~d~~~A~~va~~lg~-------~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~--~~~~~~~~~l~~---------~a~~~ 334 (515)
+|++.+++-++.|.. ++.+++++-+++...-+. +.++-.|.... .+.+..+|++++ ...+.
T Consensus 299 PDRktgr~g~~eL~s~~P~R~~nlV~vnV~~~El~~~k~~-I~~LiyP~dtvmD~SIgcafwFAsrg~G~~~~~~~sy~s 377 (520)
T KOG0573|consen 299 PDRKTGRRGLEELQSLYPKRSWNLVEVNVTYEELQKAKEH-IKHLIYPKDTVMDLSIGCAFWFASRGRGVDSENQQSYRS 377 (520)
T ss_pred ccHHHHHHHHHHHHHhCCcceEEEEeccCCHHHHHHHHHH-HHHhhCcCccccccccceEEEEeeccccccccCcccccc
Confidence 799988888877753 345566666665544333 33332222221 223344556554 12234
Q ss_pred CCeEEEeccCccccccCCccccCC---CChHHHHHHHHHHHHhhcccccccccccccccCceeccCCCCHHHHHHHHcCC
Q 010213 335 GVKMVISGEGSDEIFGGYLYFHKA---PNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAID 411 (515)
Q Consensus 335 g~~vlltG~GgDelf~Gy~~~~~~---~~~~~~~~~~~~~~~~l~~~~l~r~d~~~~~~g~e~r~PflD~~lve~~~~lP 411 (515)
.++|+++|.||||+||||.+|+.. +..+.+.+|+.+++.++.++|+.|+||+...+|+|+|+||||..||+|..++|
T Consensus 378 ~a~V~l~GsGADEllgGY~rhr~rf~~~~~e~l~eEl~~dl~rIs~RNLgRDDRViad~Gke~R~PFLde~vV~~~~~l~ 457 (520)
T KOG0573|consen 378 YARVALLGSGADELLGGYHRHRTRFEKEDLEGLREELERDLFRISHRNLGRDDRVIADSGKEVRSPFLDENVVKLSNALP 457 (520)
T ss_pred ccEEEEecCChHHhhccHHHHHhhhccCCcHHHHHHHHHHHhhhhhcccCccchhhhccCceEeccchHHHHHHHHHhcc
Confidence 579999999999999999988732 33346889999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCcchhHHHHHhhccCCCCCCChhhhhcccCCCCCCCc
Q 010213 412 PEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVG 458 (515)
Q Consensus 412 ~~~k~~~~~~~~~~K~lLR~a~~~~~~~~lP~~i~~R~K~~f~~~~~ 458 (515)
...|...+..+ .+|.+||++.+.+ -||.. ..-||++++.|+.
T Consensus 458 ~~~k~~l~l~G-G~KlllRe~~~~l---Gl~~~-s~~pKrAmQFGSr 499 (520)
T KOG0573|consen 458 VSVKMMLGLRG-GEKLLLREAGRRL---GLPSA-STEPKRAMQFGSR 499 (520)
T ss_pred hhHHhhhcccc-hhhHHHHHHHHHh---CCCcc-cccchHHHHhhhh
Confidence 99998776533 5899999999984 36654 4567888777754
No 10
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=100.00 E-value=1.8e-40 Score=326.59 Aligned_cols=227 Identities=42% Similarity=0.725 Sum_probs=183.8
Q ss_pred HHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC--CCChHHHHHHHHHHhCCC
Q 010213 211 RQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYLGTV 288 (515)
Q Consensus 211 ~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~--~~~d~~~A~~va~~lg~~ 288 (515)
+++|.+||+.|+.+++|||++||||+|||+|++++++... .++.+||+.+. ..+|..+|+++|+++|++
T Consensus 1 r~~l~~av~~~~~~~~~v~~~LSGGlDSs~va~~~~~~~~---------~~~~~~~~~~~~~~~~e~~~a~~~a~~l~~~ 71 (269)
T cd01991 1 RELLEDAVRRRLRSDVPVGVLLSGGLDSSLVAALAARLLP---------EPVKTFSIGFGFEGSDEREYARRVAEHLGTE 71 (269)
T ss_pred ChHHHHHHHHHhccCCceEEeecccHHHHHHHHHHHHhhC---------CCCceEEEeeCCCCCChHHHHHHHHHHhCCc
Confidence 3689999999999999999999999999999999988752 34778888765 356899999999999999
Q ss_pred ceEEEeChhHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCccccCCCCh-------
Q 010213 289 HHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNK------- 361 (515)
Q Consensus 289 ~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~~~~~~~------- 361 (515)
|+.+.++.+++.+.++..++..+.|. ...+..+.+.+++.+++.|++|+|||+||||+|+||+++......
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~l~~~a~~~~~~v~l~G~g~Delf~Gy~~~~~~~~~~~~~~~~ 149 (269)
T cd01991 72 HHEVEFTPADLLAALPDVIWELDEPF--ADSSAIPLYLLSRLARKHGIKVVLSGEGADELFGGYPRYRRAPLARRRRRRL 149 (269)
T ss_pred ceEEEcCHHHHHHHHHHHHHHhCCCC--CCcHHHHHHHHHHHHHHhCCEEEEecCCccccccChHHHHHHHHHhhccccC
Confidence 99999998888888877777665543 334567788899999999999999999999999999876432100
Q ss_pred -------------HHHHHHHHHHHHhhcc--------------------cccccccccccccCceeccCCCCHHHHHHHH
Q 010213 362 -------------EEFHRETCHKIKALHQ--------------------YDCLRANKSTSAWGLEARVPFLDKDFINVAM 408 (515)
Q Consensus 362 -------------~~~~~~~~~~~~~l~~--------------------~~l~r~d~~~~~~g~e~r~PflD~~lve~~~ 408 (515)
..+...+...+..+.. ..+.+.|+++|++|+|+|+||||.+|||||+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dr~~m~~gvE~R~PflD~~lve~~~ 229 (269)
T cd01991 150 LGLAALARALAGAEGLREELARDLARLHLLNGAADAAARARDLLTYLLGDLLLRDDRASMAHGLEVRVPFLDHRLVEFAL 229 (269)
T ss_pred cchhhHHHHhhhhhhhHHHHHHHHHhCcccccCCHHHHHHHHHHHhcccchHHHhhHHHHHhcccccCCCCCHHHHHHHH
Confidence 0111111121222211 1145689999999999999999999999999
Q ss_pred cCCccccccCCCCCcchhHHHHHhhccCCCCCCChhhhhcccCCCCCC
Q 010213 409 AIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDG 456 (515)
Q Consensus 409 ~lP~~~k~~~~~~~~~~K~lLR~a~~~~~~~~lP~~i~~R~K~~f~~~ 456 (515)
+||.++|+.++. +|+|||+++++ +||++|++|+|+||+.|
T Consensus 230 ~lP~~~k~~~~~----~K~iLR~a~~~----~lP~~i~~r~K~g~~~p 269 (269)
T cd01991 230 SLPPELKIRGGR----EKYLLREAAAG----LLPDEILWRPKRGFQVP 269 (269)
T ss_pred cCCHHHhcCCCC----chHHHHHHHHh----hCCHHHHcCCCCCCCCC
Confidence 999999998765 89999999999 99999999999999864
No 11
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=100.00 E-value=2.1e-39 Score=308.70 Aligned_cols=189 Identities=42% Similarity=0.781 Sum_probs=170.2
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEECCEEEEEeeeeecCCCCCCCceeeCCCcEEEEEeeEEcCh
Q 010213 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYNH 81 (515)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nGei~n~ 81 (515)
|||+|+++.+.... ....+..|+..|+|||||+.|++..+++++||+|+++.+...+.||+..+++++++++||+|||+
T Consensus 1 cGI~g~~~~~~~~~-~~~~~~~~~~~l~hRGpd~~~~~~~~~~~lgh~rl~~~~~~~~~qP~~~~~~~~~~~~nG~i~N~ 79 (220)
T cd00712 1 CGIAGIIGLDGASV-DRATLERMLDALAHRGPDGSGIWIDEGVALGHRRLSIIDLSGGAQPMVSEDGRLVLVFNGEIYNY 79 (220)
T ss_pred CeEEEEEeCCCCcc-hHHHHHHHHHHHhccCCCCCCEEEECCEEEEEEeeeecCcccCCCCeEeCCCCEEEEEEEEEeCH
Confidence 99999997654222 35678899999999999999999999999999999999876789999988889999999999999
Q ss_pred HHHHHHh--cCCCccCCChHHHHHHHHHHHHHhhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEc
Q 010213 82 EALRERL--TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISS 159 (515)
Q Consensus 82 ~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faS 159 (515)
.+|+++| .++.+.+.||+|+|+++|++||.+++++++|+|++++||+++++++++||++|.+||||+.. ++.++|||
T Consensus 80 ~~L~~~l~~~~~~~~~~sD~e~l~~~~~~~g~~~~~~l~G~fa~vi~d~~~~~l~~~rD~~G~~pLy~~~~-~~~~~~aS 158 (220)
T cd00712 80 RELRAELEALGHRFRTHSDTEVILHLYEEWGEDCLERLNGMFAFALWDKRKRRLFLARDRFGIKPLYYGRD-GGGLAFAS 158 (220)
T ss_pred HHHHHHHHhcCCcCCCCChHHHHHHHHHHHhHHHHHHhhheEEEEEEECCCCEEEEEECCCCCEeeEEEEE-CCEEEEEc
Confidence 9999999 67788999999999999999999999999999999999999999999999999999999986 67899999
Q ss_pred Cccccccc---------------------------CCcceEeCCCeEEEecCCc--eEEeeC
Q 010213 160 ELKGLNDD---------------------------CEHFEAFPPGHLYSSKSGG--LKRWYN 192 (515)
Q Consensus 160 e~~~l~~~---------------------------~~~i~~l~pG~~~~~~~~~--~~~~~~ 192 (515)
|+++|... +++|++|||||++.++.++ .++||+
T Consensus 159 e~~~l~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~~V~~l~pG~~l~~~~~~~~~~~yw~ 220 (220)
T cd00712 159 ELKALLALPGVPRELDEAALAEYLAFQYVPAPRTIFKGIRKLPPGHYLTVDPGGVEIRRYWD 220 (220)
T ss_pred chHHHHhcCCCCCCcCHHHHHHHHhcCCCCCCCchhcCceEECCceEEEEECCCeEEeeeCC
Confidence 99998652 4689999999999887553 577884
No 12
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=100.00 E-value=1.1e-38 Score=310.95 Aligned_cols=225 Identities=35% Similarity=0.646 Sum_probs=172.2
Q ss_pred HHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCC--hHHHHHHHHHHhC
Q 010213 209 VLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSP--DLKYAKEVADYLG 286 (515)
Q Consensus 209 ~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~--d~~~A~~va~~lg 286 (515)
+|+++|.+||++|+.++.+|++.||||+||++|++++++.. +.++.+||+++++.+ |..+|+++|+++|
T Consensus 1 ~~r~~l~~av~~rl~~~~~i~~~LSGGlDSs~i~~~~~~~~---------~~~~~~~t~~~~~~~~~e~~~a~~va~~~~ 71 (255)
T PF00733_consen 1 ELRELLEEAVARRLRSDKPIGILLSGGLDSSAIAALAARQG---------GPPIKTFTIGFEDDDYDEREYARKVARHLG 71 (255)
T ss_dssp HHHHHHHHHHHHHCGCTSEEEEE--SSHHHHHHHHHHHHTC---------CSEEEEEEEECSSCC--HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCChhHHHHHHHHHHhh---------CCceeEEEEEcCCCcchhHHHHHHHhcccc
Confidence 68999999999999999999999999999999999999833 368999999998876 9999999999999
Q ss_pred CCceEEEeChhHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCccccCCC----ChH
Q 010213 287 TVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAP----NKE 362 (515)
Q Consensus 287 ~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~~~~~----~~~ 362 (515)
++|+.+.++.+++.+.+++.++..+.|.........+.+.+++.+++.|++++|||+||||+|+||+.+.... ...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~ltG~GgDelf~G~~~~~~~~~~~~~~~ 151 (255)
T PF00733_consen 72 LEHHEIELDPEDLLDNLEDIIWRLDGPSPLDDPNSLPLYLLARLARENGIRVLLTGQGGDELFGGYPRYRPAYLRPLLLG 151 (255)
T ss_dssp -EEEEEEE-HHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHHCHTTBSEEE--TTHHHHHTTTT-TTGGGCGHCCHH
T ss_pred cccceeeechhhHHHhHHHHHHHHhCCcccccccccHHHHHHHhhcccceeEEEeccccccccccchHhHHHHhhhhhhh
Confidence 9999999999998888888888777665322334566677888888899999999999999999997654321 111
Q ss_pred HHHHHHHHHHHh------------------------hcccccccccccccccCceeccCCCCHHHHHHHHcCCccccccC
Q 010213 363 EFHRETCHKIKA------------------------LHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMIN 418 (515)
Q Consensus 363 ~~~~~~~~~~~~------------------------l~~~~l~r~d~~~~~~g~e~r~PflD~~lve~~~~lP~~~k~~~ 418 (515)
.....+...+.. +....+.+.+++++.+|+++|+||||.+||+||++||.++++.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~PflD~~lv~~~~~lP~~~~~~~ 231 (255)
T PF00733_consen 152 RLSRELRRFIRNLLRADLERFQQPYDRSEYFDFWKRLLARLLPRSDRASMAYGIEVRSPFLDRRLVEFCLSLPPEQRFDG 231 (255)
T ss_dssp HHHHHHHHHHHHCCCTHH----------------HHHHHHHSCCHCHHHHCTT-EEE-GGGSHHHHHHHHCB-GGGCCET
T ss_pred hhhhhhhHHHHHHhhhccccccccccccccccccccccchhhhhhhhhhhhcccccCceecCHHHHHHHHhCCHHHHcCC
Confidence 222222222211 11222446778899999999999999999999999999999988
Q ss_pred CCCCcchhHHHHHhhccCCCCCCChhhhhccc
Q 010213 419 PQEGRIEKWILRKAFDDEERPYLPKHVLYRQK 450 (515)
Q Consensus 419 ~~~~~~~K~lLR~a~~~~~~~~lP~~i~~R~K 450 (515)
+. +|++||++|++ +||++|++|+|
T Consensus 232 ~~----~K~llR~a~~~----~lP~~i~~r~K 255 (255)
T PF00733_consen 232 GI----YKYLLREAMKD----LLPPEILWRKK 255 (255)
T ss_dssp TE----CTHHHHHHHTC----CS-HHHHTS-S
T ss_pred CC----CcHHHHHHHHh----hCCHHHhcCCC
Confidence 75 79999999999 99999999998
No 13
>cd03766 Gn_AT_II_novel Gn_AT_II_novel. This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet
Probab=100.00 E-value=4.5e-36 Score=275.02 Aligned_cols=168 Identities=26% Similarity=0.387 Sum_probs=141.8
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEE----CCEEEEEeeeeecCCCCCCCceeeCCCcEEEEEee
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH----GDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNG 76 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~----~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nG 76 (515)
||||+|+++.+.........+..|++.|+|||||+++++.. ..+.++|+||++++...+.||+...+++++++|||
T Consensus 1 MCGI~~~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~~~~~~~~~~~~~~l~~~rL~i~~~~~~~QP~~~~~~~~~lv~NG 80 (181)
T cd03766 1 MCGILCSVSPSGPHINSSLLSEELLPNLRNRGPDYLSTRQLSVTNWTLLFTSSVLSLRGDHVTRQPLVDQSTGNVLQWNG 80 (181)
T ss_pred CCcEEEEEeCCCCcccchhhHHHHHHHHHhcCCCccCCEEeeccccEEEEEeeEEEecCCCCCCCCCEeCCCCEEEEECC
Confidence 99999999754432111345789999999999999999986 35899999999999767899999888889999999
Q ss_pred EEcChHHHHHHhcCCCccCCChHHHHHHHHHHHH------HhhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEe
Q 010213 77 EIYNHEALRERLTNHKFRTGSDCDVIAHLYEEYG------ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWG 150 (515)
Q Consensus 77 ei~n~~~L~~~l~~~~~~~~~D~e~i~~~~~~~G------~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~ 150 (515)
||||+.+|++ +.||+|+|+++|++|| .+++++|+|+|||++||..+++++++||++|+|||||+..
T Consensus 81 eIyN~~~l~~--------s~sDtEvi~~l~~~~g~~~~~i~~~~~~L~G~fA~vi~d~~~~~l~~aRD~~G~rPL~y~~~ 152 (181)
T cd03766 81 ELYNIDGVED--------EENDTEVIFELLANCSSESQDILDVLSSIEGPFAFIYYDASENKLYFGRDCLGRRSLLYKLD 152 (181)
T ss_pred EEECcccccC--------CCCHHHHHHHHHHHHhhhHHHHHHHHHhcccceEEEEEeCCCCEEEEEECCCCCcCcEEEee
Confidence 9999999864 6899999999999998 4899999999999999999999999999999999999985
Q ss_pred c-CcEEEEEcCcccccccCCcceEeCCCe
Q 010213 151 L-DGSIWISSELKGLNDDCEHFEAFPPGH 178 (515)
Q Consensus 151 ~-~~~~~faSe~~~l~~~~~~i~~l~pG~ 178 (515)
. ++.++|||+..... .....+++|+.
T Consensus 153 ~~~~~l~~aS~~~~~~--~~~~~e~~~~g 179 (181)
T cd03766 153 PNGFELSISSVSGSSS--GSGFQEVLAGG 179 (181)
T ss_pred CCCCcEEEEEccCCCC--CCceEECCCCc
Confidence 3 67899999865332 12466677753
No 14
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=9.1e-35 Score=301.08 Aligned_cols=218 Identities=21% Similarity=0.374 Sum_probs=172.9
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEEC---------------------------CEEEEEeeeee
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG---------------------------DFYLAHQRLAI 53 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~---------------------------~~~l~h~rl~~ 53 (515)
||||+|+++... ....+..|+.+|+|||||++|++..+ .+++||+||+|
T Consensus 1 MCGI~G~~~~~~----~~~~~~~~L~~LqhRG~DsaGia~~~~~~~~~~k~~G~v~~~f~~~~~~~~~g~~~iGH~R~at 76 (445)
T PRK08525 1 MCAVVGVINSKN----AAKLAYYALFAMQHRGQEASGISVSNGKKIKTIKGRGLVTQVFNEDNLKTLKGEIAIGHNRYST 76 (445)
T ss_pred CceEEEEEcCcc----HHHHHHHHHHHhhCcCcccceEEEEeCCEEEEEEcCcchhhccchhhhhccCCcEEEeeccccc
Confidence 999999998642 23556789999999999999998732 47999999999
Q ss_pred cCCC--CCCCceee--CCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHH--------Hhhhhcccc
Q 010213 54 IDPA--SGDQPLYN--EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLDG 119 (515)
Q Consensus 54 ~~~~--~~~qP~~~--~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G--------~~~~~~l~G 119 (515)
.|.. .+.||+.+ .+++++++|||+|||+.+|+++| .|+.|.+.||+|+|+++|.+++ .+++++|+|
T Consensus 77 ~g~~~~~naqP~~~~~~~g~~~lvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvi~~l~~~~~~~~~~ea~~~~~~~L~G 156 (445)
T PRK08525 77 AGNDSILDAQPVFARYDLGEIAIVHNGNLVNKKEVRSRLIQDGAIFQTNMDTENLIHLIARSKKESLKDRIIEALKKIIG 156 (445)
T ss_pred CCCCCCCCCCCeEeecCCCCEEEEEEEEEECHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhcCC
Confidence 9953 58999987 56889999999999999999999 6899999999999999998875 578999999
Q ss_pred ceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCccccccc-CCcceEeCCCeEEEec--CCceEE--eeCCC
Q 010213 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSK--SGGLKR--WYNPT 194 (515)
Q Consensus 120 ~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~--~~~~~~--~~~~~ 194 (515)
+||++++++ ++++++||++|+|||||+...++.++||||.++|... .+.++.++||+++.++ .++++. ++...
T Consensus 157 ~fa~vi~~~--~~l~~~RD~~GirPL~~g~~~~~~~~~ASE~~al~~~g~~~~~~~~pGe~v~i~~~~~~~~~~~~~~~~ 234 (445)
T PRK08525 157 AYCLVLLSR--SKMFAIRDPHGVRPLSLGRLKDGGYIVASETCAFDLIGAEFIRDVKPGEMLIFEQGNDEFESIQLFEPT 234 (445)
T ss_pred ceEEEEEeC--CEEEEEECCCCCCCeEEEEecCCEEEEEECHHHhhccCCcEEEEeCCCeEEEEEcCCCceEEEEecCCC
Confidence 999999996 7999999999999999987434679999999999654 4567889999998876 333322 33221
Q ss_pred -------CCcCCCCCC---CCcHHHHHHHHHHHHHHhhcc
Q 010213 195 -------WYSEAIPST---PYDPLVLRQAFENAVIKRLMT 224 (515)
Q Consensus 195 -------~~~~~~~~~---~~~~~~l~~~l~~aV~~rl~~ 224 (515)
|...+.|+. ...+-+++..+-+.+...+..
T Consensus 235 ~~~c~fe~iY~~rpds~~~g~~v~~~R~~~G~~La~~~~~ 274 (445)
T PRK08525 235 PRICAFEYIYFARPDSIVFGKNVYEVRKKMGEELAKKFPI 274 (445)
T ss_pred CccceeEeeeecCCCceECCEEHHHHHHHHHHHHHHHhcc
Confidence 111122322 234566777777777666543
No 15
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=6.4e-34 Score=294.23 Aligned_cols=233 Identities=24% Similarity=0.362 Sum_probs=179.3
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEE---------------------------CCEEEEEeeeee
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH---------------------------GDFYLAHQRLAI 53 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~---------------------------~~~~l~h~rl~~ 53 (515)
||||+|+++... ....+..++..|+|||||++|++.. +++++||+|++|
T Consensus 11 mCGI~Gi~~~~~----~~~~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~l~~l~G~~gIGH~RysT 86 (475)
T PRK07631 11 ECGVFGIWGHEE----AAQITYYGLHSLQHRGQEGAGIVVTDGGKLSAHKGLGLVTEVFQNGELDALKGKAAIGHVRYAT 86 (475)
T ss_pred CCcEEEEECCch----hHHHHHHHHHHhcCCCcccCeEEEEcCCEEEEEEcccccchhhchhhhhccCCCEEEEEeeccc
Confidence 999999998532 2456778899999999999998852 347899999999
Q ss_pred cCCC--CCCCcee--eCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHH--------Hhhhhcccc
Q 010213 54 IDPA--SGDQPLY--NEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLDG 119 (515)
Q Consensus 54 ~~~~--~~~qP~~--~~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G--------~~~~~~l~G 119 (515)
.|.. .+.||+. +.+++++++|||+|||+.+|+++| .|+.|.+.||+|+|+++|.+++ .+++++++|
T Consensus 87 ~G~~~~~n~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~Li~~~~~~~~~eai~~~~~~l~G 166 (475)
T PRK07631 87 AGGGGYENVQPLLFRSQTGSLALAHNGNLVNATQLKLQLENQGSIFQTTSDTEVLAHLIKRSGAPTLKEQIKNALSMLKG 166 (475)
T ss_pred cCCCCcCCcCCeEeEcCCCCEEEEEEEEEECHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCC
Confidence 9963 5899995 456889999999999999999999 6899999999999999999987 368999999
Q ss_pred ceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCccccccc-CCcceEeCCCeEEEecCCceEEeeC-CCCC-
Q 010213 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGLKRWYN-PTWY- 196 (515)
Q Consensus 120 ~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~~~~~~~-~~~~- 196 (515)
+||++++|. ++++++|||+|+|||||+.. ++.++||||.++|... .+.++.|+||+++.++.++++.+-. +...
T Consensus 167 ~yalvi~~~--~~l~aaRDp~GirPL~~G~~-~~~~~~ASE~~Al~~~g~~~ir~v~PGeiv~i~~~g~~~~~~~~~~~~ 243 (475)
T PRK07631 167 AYAFLLMTE--TELYVALDPNGLRPLSIGRL-GDAYVVASETCAFDVIGATYEREVEPGELLIINDEGMRSERFAPNQNR 243 (475)
T ss_pred CceeeEEeC--CEEEEEECCCCCCCEEEEEe-CCEEEEEeChHHHhhcCcceEEEcCCCeEEEEECCcEEEEecCCCCCc
Confidence 999999997 78999999999999999985 6789999999999665 3568899999998887655443321 1100
Q ss_pred --------cCCCCCC---CCcHHHHHHHHHHHHHHhhccccceEEeecCCcchHHHHH
Q 010213 197 --------SEAIPST---PYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVAS 243 (515)
Q Consensus 197 --------~~~~~~~---~~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa 243 (515)
....|+. ...+.+.|..+-+.+.+....+. -.+.+=-||+..+|
T Consensus 244 ~~C~fE~iYfarpdS~~~g~~vy~~R~~~G~~La~~~~~~~---D~VvpVP~s~~~~A 298 (475)
T PRK07631 244 SICSMEYIYFARPDSNVDGINVHTARKNLGKRLALEAPVEA---DVVTGVPDSSISAA 298 (475)
T ss_pred ccceEEEEEeecCCcccCCeEHHHHHHHHHHHHHhhCCCCC---cEEEEechhHHHHH
Confidence 0122321 23466777777766665543221 13444455665444
No 16
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.1e-33 Score=294.06 Aligned_cols=233 Identities=25% Similarity=0.340 Sum_probs=182.8
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEEC----------------------------CEEEEEeeee
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG----------------------------DFYLAHQRLA 52 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~----------------------------~~~l~h~rl~ 52 (515)
||||+|+++... ....+..++.+|+|||||++|+...+ ++++||+|++
T Consensus 21 mCGI~Gi~~~~~----~~~~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~~l~~l~G~~~IGH~R~s 96 (479)
T PRK09123 21 ECGVFGILGHPD----AAALTALGLHALQHRGQEAAGIVSFDGERFHSERRMGLVGDHFTDADVIARLPGNRAIGHVRYS 96 (479)
T ss_pred cCeEEEEEcCcc----hHHHHHHHHHHhcCcCccCCEEEEEECCEEEEEecCcchhhhhhhhhhhhccCCCEEEEEEecc
Confidence 999999998542 24567788999999999999998622 3689999999
Q ss_pred ecCCC--CCCCceeeC--CCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHH--------Hhhhhccc
Q 010213 53 IIDPA--SGDQPLYNE--DKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLD 118 (515)
Q Consensus 53 ~~~~~--~~~qP~~~~--~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G--------~~~~~~l~ 118 (515)
|.|.. .+.||+... +++++++|||+|+|+.+|+++| .|+.|.+.||+|+|++++.+++ .+++++|+
T Consensus 97 T~G~~~~~n~QP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDSEvi~~Li~~~~~~~~~eai~~~~~~L~ 176 (479)
T PRK09123 97 TTGETILRNVQPLFAELEFGGLAIAHNGNLTNALTLRRELIRRGAIFQSTSDTEVILHLIARSRKASFLDRFIDALRQVE 176 (479)
T ss_pred cCCCCCcCCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Confidence 99953 689999863 6889999999999999999999 6899999999999999998765 67899999
Q ss_pred cceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCccccccc-CCcceEeCCCeEEEecCCc-eEEeeCCCCC
Q 010213 119 GMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGG-LKRWYNPTWY 196 (515)
Q Consensus 119 G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~-~~~~~~~~~~ 196 (515)
|+||+++++. ++++++||++|+|||||+.. ++.++||||.++|... .+.++.|+||+++.++... +..+......
T Consensus 177 G~ya~vil~~--~~l~a~RD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~~r~v~pGeiv~i~~~g~~~~~~~~~~~ 253 (479)
T PRK09123 177 GAYSLVALTN--TKLIGARDPLGIRPLVLGEL-DGSPILASETCALDIIGAEFVRDVEPGELVVIDEDGSIESIKPFPPQ 253 (479)
T ss_pred cceeEEEEEC--CEEEEEECCCCCCceEEEEE-CCEEEEEECchHHhccCCceEEEECCCeEEEEeCCCcEEEEEecCCC
Confidence 9999999997 79999999999999999985 6789999999999754 5678899999999887544 5443211111
Q ss_pred c----------CCCCC---CCCcHHHHHHHHHHHHHHhhccccceEEeecCCcchHHHHH
Q 010213 197 S----------EAIPS---TPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVAS 243 (515)
Q Consensus 197 ~----------~~~~~---~~~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa 243 (515)
+ ...|+ ....+.++|..+.+.+.+....+. -.+.+-.||+..++
T Consensus 254 ~~~~C~FE~VYfarPdS~~~g~~vy~~R~~~g~~La~~~~~~~---D~Vv~VP~sg~~~A 310 (479)
T PRK09123 254 PARFCIFEYVYFARPDSVVGGRSVYEVRKNIGRELARESPVDA---DVVVPVPDSGVPAA 310 (479)
T ss_pred CCCCChhheEEecCCCceECCeEHHHHHHHHHHHHHHhCCCCC---eEEEEcCccHHHHH
Confidence 1 01222 133567888888888887654322 23445666666544
No 17
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.8e-33 Score=291.46 Aligned_cols=183 Identities=25% Similarity=0.404 Sum_probs=157.8
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEEC----------------------------CEEEEEeeee
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG----------------------------DFYLAHQRLA 52 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~----------------------------~~~l~h~rl~ 52 (515)
||||+|+++.+. ....+..++.+|+|||||++|++..+ ++++||+|++
T Consensus 11 mCGI~Gi~~~~~----~~~~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~l~~l~G~~~IGH~Rys 86 (484)
T PRK07272 11 ECGVFGIWGHPD----AAQLTYFGLHSLQHRGQEGAGIVSNDNGKLKGHRDLGLLSEVFKDPADLDKLTGQAAIGHVRYA 86 (484)
T ss_pred cCeEEEEECCcc----HHHHHHHHHHHhcccCCccceEEEEeCCeeEEEecCCcccchhcchhhHhcCCCcEEEEEeecc
Confidence 999999997532 24567788999999999999998742 3799999999
Q ss_pred ecCCC--CCCCceee--CCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHH--------Hhhhhccc
Q 010213 53 IIDPA--SGDQPLYN--EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLD 118 (515)
Q Consensus 53 ~~~~~--~~~qP~~~--~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G--------~~~~~~l~ 118 (515)
|.|.. .+.||+.. .+++++++|||+|+|+.+|+++| .|+.|.+.||||+|++++.+++ .+++++++
T Consensus 87 T~G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVI~~Li~~~~~~~~~eai~~~~~~l~ 166 (484)
T PRK07272 87 TAGSASIENIQPFLFHFHDMQFGLAHNGNLTNAVSLRKELEKQGAIFHSSSDTEILMHLIRRSHNPTFMGKLKEALNTVK 166 (484)
T ss_pred ccCCCCcCCCCCEEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHcc
Confidence 99953 58999976 46889999999999999999999 6899999999999999998754 57889999
Q ss_pred cceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCccccccc-CCcceEeCCCeEEEecCCceEE
Q 010213 119 GMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGLKR 189 (515)
Q Consensus 119 G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~~~~ 189 (515)
|+||+++++. ++++++|||+|+|||||+...++.++||||.++|... .+.++.|+||+++.++.++++.
T Consensus 167 G~ya~~i~~~--~~l~a~RDp~GirPL~~G~~~~~~~~~ASE~~Al~~ig~~~ir~l~PGEiv~i~~~g~~~ 236 (484)
T PRK07272 167 GGFAYLLLTE--DKLIAALDPNGFRPLSIGKMKNGAYVVASETCAFDVVGAEWVRDVQPGEIVIIDDEGIQY 236 (484)
T ss_pred CceeEEEEEC--CEEEEEECCCCCCcEEEEEecCCEEEEEECHHHHhccCCceEEEcCCCeEEEEECCceEE
Confidence 9999999997 7899999999999999987535579999999999765 3668899999999887665443
No 18
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=100.00 E-value=1.9e-34 Score=272.63 Aligned_cols=172 Identities=29% Similarity=0.453 Sum_probs=153.5
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEE---------------------------CCEEEEEeeeeec
Q 010213 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH---------------------------GDFYLAHQRLAII 54 (515)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~---------------------------~~~~l~h~rl~~~ 54 (515)
|||+|+++... ..+.+..|+.+|+|||||++|++.. +.+++||+|+++.
T Consensus 1 CGI~G~~~~~~----~~~~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at~ 76 (215)
T cd00714 1 CGIVGYIGKRE----AVDILLEGLKRLEYRGYDSAGIAVIGDGSLEVVKAVGKVANLEEKLAEKPLSGHVGIGHTRWATH 76 (215)
T ss_pred CEEEEEEcCcc----HHHHHHHHHHHHhccCcCcceEEEEeCCEEEEEEcCccHHHHHHHhhhccCCccEEEEEEEccCC
Confidence 99999998532 2356788999999999999999875 3578999999999
Q ss_pred CC--CCCCCceeeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHHH----------hhhhccccc
Q 010213 55 DP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYGE----------NFVDMLDGM 120 (515)
Q Consensus 55 ~~--~~~~qP~~~~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G~----------~~~~~l~G~ 120 (515)
+. ..+.||+...+++++++|||+|||+.+|+++| .|+.+.+.||+|+|+++|.+++. ++++.|+|+
T Consensus 77 g~~~~~n~qPf~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~sDsEvi~~l~~~~~~~~~~~~~ai~~~~~~l~G~ 156 (215)
T cd00714 77 GEPTDVNAHPHRSCDGEIAVVHNGIIENYAELKEELEAKGYKFESETDTEVIAHLIEYYYDGGLDLLEAVKKALKRLEGA 156 (215)
T ss_pred CCCCccCCCCCCcCCCCEEEEEeEEEcCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhccc
Confidence 96 35899999877889999999999999999999 58899999999999999999886 689999999
Q ss_pred eEEEEEECCCC-EEEEEecCCCcceeEEEEecCcEEEEEcCcccccccCCcceEeCCCeEEE
Q 010213 121 FSFVLLDTRDN-SFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYS 181 (515)
Q Consensus 121 fa~v~~d~~~~-~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~ 181 (515)
||+++||..++ +++++|| .|||||+.. ++.++||||.++|...+..|..|.+|+++.
T Consensus 157 fa~~~~d~~~~~~l~~~RD---~~PL~~~~~-~~~~~~aSE~~al~~~~~~~~~~~~~~~~~ 214 (215)
T cd00714 157 YALAVISKDEPDEIVAARN---GSPLVIGIG-DGENFVASDAPALLEHTRRVIYLEDGDIAV 214 (215)
T ss_pred eEEEEEEeCCCCEEEEEEC---CCCcEEEEc-CCeEEEEECHHHHHHhcCEEEEECCCCEEe
Confidence 99999998764 9999999 499999985 678999999999999999999999998864
No 19
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=5.7e-34 Score=294.97 Aligned_cols=227 Identities=22% Similarity=0.305 Sum_probs=178.1
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEEC--------------------------CEEEEEeeeeec
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG--------------------------DFYLAHQRLAII 54 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~--------------------------~~~l~h~rl~~~ 54 (515)
||||+|+++.+. ....+..++.+|+|||+|++|++..+ ++++||+||+|.
T Consensus 19 mCGI~G~~~~~~----~~~~~~~gL~~LqhRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~~l~G~~gIGH~RyaT~ 94 (474)
T PRK06388 19 DCAVVGFKGGIN----AYSPIITALRTLQHRGQESAGMAVFDGRKIHLKKGMGLVTDVFNPATDPIKGIVGVGHTRYSTA 94 (474)
T ss_pred CCeEEEEECCcc----hHHHHHHHHHHhhCcCcCcceEEEEcCCEEEEEecCcchHHHhhhhhhcCCCcEEEeeeeeeec
Confidence 999999998542 24568899999999999999998732 368999999999
Q ss_pred CCC--CCCCceee--CCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHH----HHH-----Hhhhhcccc
Q 010213 55 DPA--SGDQPLYN--EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYE----EYG-----ENFVDMLDG 119 (515)
Q Consensus 55 ~~~--~~~qP~~~--~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~----~~G-----~~~~~~l~G 119 (515)
|.. .+.||+.. ..++++++|||+|||+.+|+++| .|+.|.++||+|+|++++. ++| .+++++++|
T Consensus 95 G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVi~~li~~~~~~~~~~eai~~~~~~l~G 174 (474)
T PRK06388 95 GSKGVENAGPFVINSSLGYIGISHNGEIVNADELREEMKKEGYIFQSDSDTEVMLAELSRNISKYGLKEGFERSMERLRG 174 (474)
T ss_pred CCCCccCCCCeEeecCCCCEEEEECceECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhccC
Confidence 953 58999973 46789999999999999999999 6899999999999999994 345 568999999
Q ss_pred ceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCcccccccC-CcceEeCCCeEEEecCCceEEeeC-CCC--
Q 010213 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDC-EHFEAFPPGHLYSSKSGGLKRWYN-PTW-- 195 (515)
Q Consensus 120 ~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~-~~i~~l~pG~~~~~~~~~~~~~~~-~~~-- 195 (515)
+||+++++. ++++++||++|+|||||+.. ++.++||||.++|.... +.|+.|+||+++.++.++++.+.. +..
T Consensus 175 ~ya~vi~~~--~~l~a~RDp~GiRPL~~G~~-~~~~~~ASE~~Al~~~~~~~i~~l~PGeiv~i~~~g~~~~~~~~~~~~ 251 (474)
T PRK06388 175 AYACALMIN--DRLYAIRDPNGIRPLVLGKN-FDGYIIASESCAIDALSGTTIKNVEPGEVVEVFDNGYKTIFKLDGDKV 251 (474)
T ss_pred ceeEEEEEC--CEEEEEECCCCCCceEEEec-CCEEEEEEChHHHHhccCcEEEEeCCCEEEEEECCceEEEEecCCCcc
Confidence 999999976 89999999999999999985 66799999999999864 479999999998887655533332 110
Q ss_pred -------CcCCCCCC---CCcHHHHHHHHHHHHHHhhc--cccceEEeecC
Q 010213 196 -------YSEAIPST---PYDPLVLRQAFENAVIKRLM--TDVPFGVLLSG 234 (515)
Q Consensus 196 -------~~~~~~~~---~~~~~~l~~~l~~aV~~rl~--~~~~v~v~LSG 234 (515)
.....|+. ...+.+.|..+-+....... .|.-+.|.+||
T Consensus 252 ~~C~fE~iYfarpds~~~g~~vy~~R~~~G~~La~~~~~~~D~VvpVP~s~ 302 (474)
T PRK06388 252 AHCMFEYVYFSRPDSIIDGINVYQARVRMGMRLAKESPVEADVVVPVPDSG 302 (474)
T ss_pred ccceEEEEeecCCccccCCcHHHHHHHHHHHHHHhhccCCCcEEEeeCCCc
Confidence 01122322 23456677777666666543 23346677776
No 20
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=3.1e-33 Score=290.39 Aligned_cols=228 Identities=25% Similarity=0.310 Sum_probs=174.9
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEEC---------------------------CEEEEEeeeee
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG---------------------------DFYLAHQRLAI 53 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~---------------------------~~~l~h~rl~~ 53 (515)
||||+|+++.+.+ ....+..++..|+|||||++|+...+ ++++||+|++|
T Consensus 33 mCGI~Gi~~~~~~---~~~~~~~gL~~LqHRGqdsaGIa~~~~~~~~~~K~~Glv~~vf~~~~l~~l~G~i~IGHvRysT 109 (500)
T PRK07349 33 ACGVFGVYAPGEE---VAKLTYFGLYALQHRGQESAGIATFEGDKVHLHKDMGLVSQVFDEDILEELPGDLAVGHTRYST 109 (500)
T ss_pred CCeEEEEECCCcC---HHHHHHHHHHHhcccCcCcceEEEEeCCEEEEEecCcchhhhcchhhhhcCCCCEEEEEeeccc
Confidence 9999999985432 24566789999999999999997622 36999999999
Q ss_pred cCCC--CCCCceeeC--CCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHH-------HH---Hhhhhcc
Q 010213 54 IDPA--SGDQPLYNE--DKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEE-------YG---ENFVDML 117 (515)
Q Consensus 54 ~~~~--~~~qP~~~~--~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~-------~G---~~~~~~l 117 (515)
.|.. .++||+... .++++++|||+|||+.+|+++| .|+.|.++||||+|+++|.+ |+ .+++++|
T Consensus 110 ~G~~~~~naQP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~li~~~~~~~~~~~eai~~~~~~l 189 (500)
T PRK07349 110 TGSSRKANAQPAVLETRLGPLALAHNGNLVNTVELREELLARGCELTTTTDSEMIAFAIAQAVDAGKDWLEAAISAFQRC 189 (500)
T ss_pred CCCCCccCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHh
Confidence 9963 589999864 4789999999999999999999 68999999999999999875 33 4688999
Q ss_pred ccceEEEEEECCCCEEEEEecCCCcceeEEEEec---CcEEEEEcCccccccc-CCcceEeCCCeEEEecCCceEEe-eC
Q 010213 118 DGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGL---DGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGLKRW-YN 192 (515)
Q Consensus 118 ~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~---~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~~~~~-~~ 192 (515)
+|+||+++.++ ++++++||++|+|||||+... ++.++||||.++|... .+.|+.|+||+++.++.+++..+ +.
T Consensus 190 ~G~ya~vi~~~--~~l~aaRDp~GiRPL~~G~~~~~~~~~~~~ASE~~Al~~lg~~~ir~v~PGeiv~i~~~g~~~~~~~ 267 (500)
T PRK07349 190 QGAFSLVIGTP--EGLMGVRDPNGIRPLVIGTLGEGGPGRYVLASETCALDIIGAEYLRDVEPGELVWITEGGLSSFHWA 267 (500)
T ss_pred hhhEEEEEEeC--CEEEEEECCCCCCCeEEEecccCCCCeEEEEeccchhhhcCCceEEEeCCCeEEEEECCceEEEecc
Confidence 99999999987 789999999999999998741 3479999999999765 46789999999998876554332 21
Q ss_pred CCCC---------cCCCCCC---CCcHHHHHHHHHHHHHHhhc--cccceEEeec
Q 010213 193 PTWY---------SEAIPST---PYDPLVLRQAFENAVIKRLM--TDVPFGVLLS 233 (515)
Q Consensus 193 ~~~~---------~~~~~~~---~~~~~~l~~~l~~aV~~rl~--~~~~v~v~LS 233 (515)
+... ....|+. ...+.+.|..+-+.+.+... .|.-++|..|
T Consensus 268 ~~~~~~~C~fE~vYfarpdS~~~g~~V~~~R~~~G~~La~~~~~~~DvVv~VP~s 322 (500)
T PRK07349 268 QEPQRKLCIFEMIYFARPDSRMHGESLYSYRQRLGQQLAKESPVDADLVIGVPDS 322 (500)
T ss_pred cCCCcceeEEEeeeccCCCCccCCeEHHHHHHHHHHHHhhhcccCCcEEEEeccc
Confidence 1110 1122322 23466777777777665543 2333444444
No 21
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=4.3e-33 Score=286.48 Aligned_cols=179 Identities=27% Similarity=0.409 Sum_probs=154.4
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEE--------------------------CCEEEEEeeeeec
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH--------------------------GDFYLAHQRLAII 54 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~--------------------------~~~~l~h~rl~~~ 54 (515)
||||+|+++. . ....+..++.+|+|||+|++|++.. +++++||+|++|.
T Consensus 4 ~CGI~G~~~~-~----~~~~l~~gL~~LqhRG~dsaGIa~~~~~~~~~K~~Glv~~vf~~~~~~~l~g~~~IGH~R~sT~ 78 (442)
T PRK08341 4 KCGIFAAYSE-N----APKKAYYALIALQHRGQEGAGISVWRHRIRTVKGHGLVSEVFKGGSLSRLKSNLAIGHVRYSTS 78 (442)
T ss_pred ccEEEEEECC-C----cHHHHHHHHHHhhccCcccceEEEECCcEEEEecCCchhhhhcccccccCCCCEEEEEeecccc
Confidence 9999999983 2 2456788999999999999999662 3578999999999
Q ss_pred CCCCCCCceeeC--CCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHH----HHH------Hhhhhccccc
Q 010213 55 DPASGDQPLYNE--DKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYE----EYG------ENFVDMLDGM 120 (515)
Q Consensus 55 ~~~~~~qP~~~~--~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~----~~G------~~~~~~l~G~ 120 (515)
|...+.||+... +++++++|||+|||+.+|+++| .|+.|.++||||+|++++. ++| .+++++|+|+
T Consensus 79 G~~~~~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVI~~li~~~~~~~~~~~~ai~~~~~~l~G~ 158 (442)
T PRK08341 79 GSLSEVQPLEVECCGYKIAIAHNGTLTNFLPLRRKYESRGVKFRSSVDTELIGISFLWHYSETGDEFEAMREVFNEVKGA 158 (442)
T ss_pred CCCcCcCCEEeecCCCCEEEEEEEEEECHHHHHHHHHHcCCccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccCc
Confidence 977889999754 5789999999999999999999 6899999999999987653 333 2467999999
Q ss_pred eEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCcccccccCCcceEeCCCeEEEecCCceE
Q 010213 121 FSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLK 188 (515)
Q Consensus 121 fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~ 188 (515)
||+++.+. ++++++||++|+|||||+. .+ .++||||.++|......|+.|+||+++.++.++++
T Consensus 159 yal~i~~~--~~l~a~RD~~GirPL~~G~-~~-~~~~ASE~~Al~~~~~~v~~l~PGeiv~i~~~g~~ 222 (442)
T PRK08341 159 YSVAILFD--GKIIVARDPVGFRPLSYGE-GD-GHYFASEDSALRMFVNEIRDVFPGEVFVVSEGEVE 222 (442)
T ss_pred eEEEEEEC--CEEEEEEcCCCceEEEEEE-CC-EEEEEeCcHHHHhhCCeEEEeCCCEEEEEECCceE
Confidence 99999987 8999999999999999997 34 58999999999988888999999999988766544
No 22
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.1e-32 Score=285.71 Aligned_cols=234 Identities=24% Similarity=0.355 Sum_probs=181.9
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEEC---------------------------CEEEEEeeeee
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG---------------------------DFYLAHQRLAI 53 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~---------------------------~~~l~h~rl~~ 53 (515)
||||+|+++.+. ....+..++.+|+|||||++|++..+ ++++||+|++|
T Consensus 11 mCGI~Gi~~~~~----~~~~~~~gL~~LqhRG~dsaGia~~d~~~~~~~k~~GlV~~vf~~~~l~~l~g~~~IGHvRyaT 86 (471)
T PRK06781 11 ECGVFGIWGHEN----AAQVSYYGLHSLQHRGQEGAGIVVNNGEKIVGHKGLGLISEVFSRGELEGLNGKSAIGHVRYAT 86 (471)
T ss_pred cCeEEEEEcCcc----HHHHHHHHHHHhhCcCcCcceEEEEeCCEEEEEecCcchhhhcchhhHhcCCCCEEEEEeEccc
Confidence 999999998642 23566789999999999999998522 46889999999
Q ss_pred cCCC--CCCCceee--CCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHH--------Hhhhhcccc
Q 010213 54 IDPA--SGDQPLYN--EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLDG 119 (515)
Q Consensus 54 ~~~~--~~~qP~~~--~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G--------~~~~~~l~G 119 (515)
.|.. .+.||+.. .+++++++|||+|+|+.+|+++| .|+.|.+.||||+|++++.+++ .+++++++|
T Consensus 87 ~G~~~~~naqP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvI~~Li~~~~~~~~~eai~~~~~~l~G 166 (471)
T PRK06781 87 AGGSEVANVQPLLFRFSDHSMALAHNGNLINAKMLRRELEAEGSIFQTSSDTEVLLHLIKRSTKDSLIESVKEALNKVKG 166 (471)
T ss_pred CCCCCcCCCCCeEEecCCCCEEEEEEEEEcCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCC
Confidence 9963 58999963 46789999999999999999999 6889999999999999998875 567899999
Q ss_pred ceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCccccccc-CCcceEeCCCeEEEecCCceEE--eeCCCCC
Q 010213 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGLKR--WYNPTWY 196 (515)
Q Consensus 120 ~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~~~~--~~~~~~~ 196 (515)
+|++++++. ++++++||++|+|||||+.. ++.++||||.++|... .+.++.|+||+++.++.++++. +..+...
T Consensus 167 ~ya~vi~~~--~~l~aaRD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~ir~v~pGeiv~i~~~g~~~~~~~~~~~~ 243 (471)
T PRK06781 167 AFAYLLLTG--NEMIVALDPNGFRPLSIGKM-GDAYVVASETCAFDVVGATYIRDVEPGELLIINDEGIHVDRFTNEVDH 243 (471)
T ss_pred cEEEEEEEC--CEEEEEECCCCCCCeEEEEE-CCEEEEEECchHhhhcCCcEEEEeCCCEEEEEECCceEEEecCcCccc
Confidence 999999997 78999999999999999985 6689999999999754 3568889999999887655433 2221110
Q ss_pred --------cCCCCCC---CCcHHHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHH
Q 010213 197 --------SEAIPST---PYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASI 244 (515)
Q Consensus 197 --------~~~~~~~---~~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~ 244 (515)
....|+. ...+.+.|..+-+.+.+....+. =.+.+--||+..+|.
T Consensus 244 ~~C~fE~vYfarpds~~~g~~vy~~R~~~G~~La~~~~~~~---D~vv~VP~s~~~~A~ 299 (471)
T PRK06781 244 AICSMEYIYFARPDSNIAGINVHAARKNMGKRLAAEAPIEA---DVVTGVPDSSISAAI 299 (471)
T ss_pred ccceEEEEEecCCCceeCCEEHHHHHHHHHHHHhhhCCCCC---cEEEEcChhHHHHHH
Confidence 0122322 23466777777777666554332 245667788877654
No 23
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=4.1e-33 Score=290.19 Aligned_cols=228 Identities=21% Similarity=0.323 Sum_probs=177.0
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEEC---------------------------CEEEEEeeeee
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG---------------------------DFYLAHQRLAI 53 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~---------------------------~~~l~h~rl~~ 53 (515)
||||+|+++...+ ....+..++..|+|||||+.|+...+ ++++||+|++|
T Consensus 23 mCGI~Gi~~~~~~---~~~~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~d~~l~~l~G~i~IGHvR~sT 99 (510)
T PRK07847 23 ECGVFGVWAPGEE---VAKLTYYGLYALQHRGQEAAGIAVSDGSQILVFKDLGLVSQVFDEQTLASLQGHVAIGHCRYST 99 (510)
T ss_pred cCeEEEEECCCcC---HHHHHHHHHHHHhhhCcCcccEEEEeCCEEEEEecCccHHHhhchhhhhhcCCcEEEEeccCCc
Confidence 9999999985422 24566788999999999999987632 36899999999
Q ss_pred cCCC--CCCCceeeC---CCcEEEEEeeEEcChHHHHHHh--cCC-----CccCCChHHHHHHHHHHHHH---------h
Q 010213 54 IDPA--SGDQPLYNE---DKKIVVTVNGEIYNHEALRERL--TNH-----KFRTGSDCDVIAHLYEEYGE---------N 112 (515)
Q Consensus 54 ~~~~--~~~qP~~~~---~~~~~~~~nGei~n~~~L~~~l--~~~-----~~~~~~D~e~i~~~~~~~G~---------~ 112 (515)
.|.. .++||+... .++++++|||+|||+.+|+++| .|+ .|.+.||||+|++++.+++. +
T Consensus 100 ~G~~~~~naQP~~~~~~~~g~ialvHNG~I~N~~eLr~~L~~~G~~~~~~~f~s~sDSEVI~~Li~~~~~~~~~~eai~~ 179 (510)
T PRK07847 100 TGASTWENAQPTFRATAAGGGVALGHNGNLVNTAELAARARDRGLIRGRDPAGATTDTDLVTALLAHGAADSTLEQAALE 179 (510)
T ss_pred CCCCcccCCCCcCcccCCCCCEEEEEEEEEeCHHHHHHHHHhcCCccccCCCCCCCHHHHHHHHHHHhccCCCHHHHHHH
Confidence 9864 589999753 6889999999999999999999 465 48999999999999988763 5
Q ss_pred hhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCccccccc-CCcceEeCCCeEEEecCCce--EE
Q 010213 113 FVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGL--KR 189 (515)
Q Consensus 113 ~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~~--~~ 189 (515)
++++++|+|+++++|. ++++++||++|+|||||+.. ++.++||||.++|... .+.|+.|+||+++.++.+++ .+
T Consensus 180 ~~~~l~G~yA~vi~d~--~~L~aaRDp~GirPL~~g~~-~~~~~vASE~~AL~~~g~~~ir~v~PGeiv~I~~~gv~~~~ 256 (510)
T PRK07847 180 LLPTVRGAFCLVFMDE--HTLYAARDPQGVRPLVLGRL-ERGWVVASETAALDIVGASFVREIEPGELIAIDADGLRSTR 256 (510)
T ss_pred HHHHhhhheEEEEEEC--CEEEEEECCCCCCCcEEEEE-CCeEEEEechHHHhccCCcEEEEECcCEEEEEECCceEEEe
Confidence 8999999999999997 78999999999999999985 6779999999999876 67899999999998876543 33
Q ss_pred eeCCCCC-------cCCCCCC---CCcHHHHHHHHHHHHHHhhcc--ccceEEeecC
Q 010213 190 WYNPTWY-------SEAIPST---PYDPLVLRQAFENAVIKRLMT--DVPFGVLLSG 234 (515)
Q Consensus 190 ~~~~~~~-------~~~~~~~---~~~~~~l~~~l~~aV~~rl~~--~~~v~v~LSG 234 (515)
+|.+... ....|+. ...+.+.|..+-+.+.+.... |.-+.|..||
T Consensus 257 ~~~~~~~~C~fE~vYfarpdS~~~g~~v~~~R~~~G~~La~~~~~~~D~VvpVP~sG 313 (510)
T PRK07847 257 FAEPTPKGCVFEYVYLARPDTTIAGRSVHAARVEIGRRLAREHPVEADLVIPVPESG 313 (510)
T ss_pred ccCCCCCCCeEEEEEecCCcceeCCeEHHHHHHHHHHHHHhhCCCCCeEEEeccCch
Confidence 5543210 0122321 234667777776666655432 2223445553
No 24
>PLN02440 amidophosphoribosyltransferase
Probab=100.00 E-value=9.2e-33 Score=288.33 Aligned_cols=180 Identities=26% Similarity=0.397 Sum_probs=156.4
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEE---------------------------ECCEEEEEeeeee
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQ---------------------------HGDFYLAHQRLAI 53 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~---------------------------~~~~~l~h~rl~~ 53 (515)
||||+|+++.+. ....+..|+.+|+|||||+.|++. .+++++||+|+++
T Consensus 1 MCGI~Gi~~~~~----~~~~~~~~L~~LqHRGqds~Gi~~~d~~~~~~~k~~Glv~~vf~~~~l~~l~g~~~IGHvRysT 76 (479)
T PLN02440 1 ECGVVGIFGDPE----ASRLCYLGLHALQHRGQEGAGIVTVDGNRLQSITGNGLVSDVFDESKLDQLPGDIAIGHVRYST 76 (479)
T ss_pred CceEEEEECCcc----HHHHHHHHHHHHHhhCcccceEEEEcCCEEEEEecCCchhhhcchhhhhccCCcEEEEEEeccc
Confidence 999999997431 245688899999999999999976 2347899999999
Q ss_pred cCCC--CCCCceee--CCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHH--------HHhhhhcccc
Q 010213 54 IDPA--SGDQPLYN--EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEY--------GENFVDMLDG 119 (515)
Q Consensus 54 ~~~~--~~~qP~~~--~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~--------G~~~~~~l~G 119 (515)
.+.. .+.||+.. ..++++++|||+|+|+.+|+++| .|+.|.+.||+|+|+++|.++ +.+++++++|
T Consensus 77 ~G~~~~~n~QPf~~~~~~g~~~lahNG~I~N~~eLr~~L~~~g~~f~s~sDsEvi~~li~~~~~~~~~~a~~~~~~~l~G 156 (479)
T PLN02440 77 AGASSLKNVQPFVANYRFGSIGVAHNGNLVNYEELRAKLEENGSIFNTSSDTEVLLHLIAISKARPFFSRIVDACEKLKG 156 (479)
T ss_pred cCCCCccCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHhcc
Confidence 9863 58999985 35789999999999999999999 688899999999999999765 5788999999
Q ss_pred ceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCccccccc-CCcceEeCCCeEEEecCCc
Q 010213 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGG 186 (515)
Q Consensus 120 ~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~ 186 (515)
+|++++||. ++++++||++|+|||||+...++.++||||.++|... .+.|+.|+||+++.++.++
T Consensus 157 ~fa~vi~~~--~~l~a~RD~~G~RPL~~g~~~~~~~~vASE~~al~~~g~~~ir~v~PGeiv~i~~~g 222 (479)
T PLN02440 157 AYSMVFLTE--DKLVAVRDPHGFRPLVMGRRSNGAVVFASETCALDLIGATYEREVNPGEVIVVDKDK 222 (479)
T ss_pred ceeeeEEEC--CEEEEEECCCCCCceEEEEeCCCEEEEEECchHHhccCCcEEEEeCCCeEEEEECCC
Confidence 999999997 6799999999999999986545679999999999875 5778999999998887554
No 25
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=2.1e-31 Score=277.43 Aligned_cols=183 Identities=25% Similarity=0.389 Sum_probs=156.9
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEEC---------------------------CEEEEEeeeee
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG---------------------------DFYLAHQRLAI 53 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~---------------------------~~~l~h~rl~~ 53 (515)
||||+|+++.+... ....+..++.+|+|||||++|++..+ ++++||+|++|
T Consensus 14 mCGI~Gi~~~~~~~--~~~~~~~gL~~LqhRG~dsaGIa~~~~~~~~~~k~~G~v~~~f~~~~l~~l~g~~~iGHvR~sT 91 (469)
T PRK05793 14 ECGVFGVFSKNNID--VASLTYYGLYALQHRGQESAGIAVSDGEKIKVHKGMGLVSEVFSKEKLKGLKGNSAIGHVRYST 91 (469)
T ss_pred CCeEEEEEcCCCcc--HHHHHHHHHHHHhhhCCCcceEEEEeCCEEEEEecccccccccchhhHhccCCcEEEEEeeccc
Confidence 99999999864311 24567788999999999999997532 47899999999
Q ss_pred cCCC--CCCCceeeC--CCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHH--------Hhhhhcccc
Q 010213 54 IDPA--SGDQPLYNE--DKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLDG 119 (515)
Q Consensus 54 ~~~~--~~~qP~~~~--~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G--------~~~~~~l~G 119 (515)
.|.. .++||+... +++++++|||+|+|+.+|+++| .|+.|.+.||+|+|++++.+++ .+++++++|
T Consensus 92 ~G~~~~~n~qPf~~~~~~g~~alvhNG~I~N~~eLr~~L~~~g~~f~s~sDSEvi~~li~~~~~~~~~~ai~~~~~~l~G 171 (469)
T PRK05793 92 TGASDLDNAQPLVANYKLGSIAIAHNGNLVNADVIRELLEDGGRIFQTSIDSEVILNLIARSAKKGLEKALVDAIQAIKG 171 (469)
T ss_pred CCCCCCCCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhh
Confidence 9863 589999864 6889999999999999999999 6889999999999999998875 368899999
Q ss_pred ceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCccccccc-CCcceEeCCCeEEEecCCceE
Q 010213 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGLK 188 (515)
Q Consensus 120 ~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~~~ 188 (515)
+|++++++. ++++++||++|+|||||+.. ++.++||||.++|... .+.++.|+||+++.++.++++
T Consensus 172 ~ya~vi~~~--~~l~a~RD~~GirPL~~g~~-~~~~~vASE~~al~~~g~~~~r~v~pGeiv~i~~~g~~ 238 (469)
T PRK05793 172 SYALVILTE--DKLIGVRDPHGIRPLCLGKL-GDDYILSSESCALDTIGAEFIRDVEPGEIVIIDEDGIK 238 (469)
T ss_pred hceEEEEEC--CEEEEEECCCCCCCcEEEEE-CCEEEEEEChHHHhhcCcceEEEeCCCeEEEEECCceE
Confidence 999999987 79999999999999999986 6789999999999764 356889999999988765543
No 26
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=100.00 E-value=9e-32 Score=260.99 Aligned_cols=183 Identities=26% Similarity=0.407 Sum_probs=157.7
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEEC---------------------------CEEEEEeeeeec
Q 010213 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG---------------------------DFYLAHQRLAII 54 (515)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~---------------------------~~~l~h~rl~~~ 54 (515)
|||+|+++... ....+..|+..|+|||||+.|++..+ .+++||+|+++.
T Consensus 1 Cgi~g~~~~~~----~~~~~~~~l~~l~~RG~D~~Gi~~~d~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~lgH~R~at~ 76 (252)
T cd00715 1 CGVFGIYGAED----AARLTYLGLYALQHRGQESAGIATSDGKRFHTHKGMGLVSDVFDEEKLRRLPGNIAIGHVRYSTA 76 (252)
T ss_pred CEEEEEECCcc----hHHHHHHHHHHHhccCcceeEEEEEeCCEEEEEecCCcHHHhhcccchhhCCCcEEEEEEEcccC
Confidence 99999998632 23457799999999999999987632 368999999999
Q ss_pred CCC--CCCCceee--CCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHHH---------hhhhcccc
Q 010213 55 DPA--SGDQPLYN--EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYGE---------NFVDMLDG 119 (515)
Q Consensus 55 ~~~--~~~qP~~~--~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G~---------~~~~~l~G 119 (515)
+.. .++||+.. .+++++++|||+|+|+.+|+++| .++.+.+.||+|++++++.+++. ++++.++|
T Consensus 77 g~~~~~n~qPf~~~~~~~~~~~~hNG~I~n~~~L~~~l~~~g~~~~~~tDSEvi~~l~~~~~~~~~~~~al~~~~~~l~G 156 (252)
T cd00715 77 GSSSLENAQPFVVNSPLGGIALAHNGNLVNAKELREELEEEGRIFQTTSDSEVILHLIARSLAKDDLFEAIIDALERVKG 156 (252)
T ss_pred CCCCccCCCCcEEecCCCcEEEEEEEEECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHhhccCCHHHHHHHHHHhccC
Confidence 863 58999986 35789999999999999999999 57788899999999999999984 58999999
Q ss_pred ceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCccccccc-CCcceEeCCCeEEEecCCceEEe
Q 010213 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGLKRW 190 (515)
Q Consensus 120 ~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~~~~~ 190 (515)
+|+++++|+ ++++++||++|.+||||+...++.++||||.++|... .+.++.||||+++.++.+++..+
T Consensus 157 ~~a~~~~d~--~~l~~~RD~~G~~PL~~~~~~~~~~~vASE~~al~~~~~~~~~~l~pg~~~~i~~~~~~~~ 226 (252)
T cd00715 157 AYSLVIMTA--DGLIAVRDPHGIRPLVLGKLEGDGYVVASESCALDIIGAEFVRDVEPGEIVVIDDDGLESS 226 (252)
T ss_pred ceEEEEEEC--CEEEEEECCCCCCCeEEEEeCCCeEEEEECHHHhcccCCcEEEEcCCCeEEEEECCceEEE
Confidence 999999998 8999999999999999988533789999999999875 67899999999998876654433
No 27
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=100.00 E-value=5.6e-32 Score=294.49 Aligned_cols=180 Identities=29% Similarity=0.479 Sum_probs=158.7
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEE---------------------------ECCEEEEEeeeee
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQ---------------------------HGDFYLAHQRLAI 53 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~---------------------------~~~~~l~h~rl~~ 53 (515)
||||+|+++... ....+..|+..|+|||||+.|++. .+++++||+|+++
T Consensus 1 MCGI~g~~~~~~----~~~~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~g~~~igH~R~at 76 (604)
T PRK00331 1 MCGIVGYVGQRN----AAEILLEGLKRLEYRGYDSAGIAVLDDGGLEVRKAVGKVANLEAKLEEEPLPGTTGIGHTRWAT 76 (604)
T ss_pred CcEEEEEEcCcc----HHHHHHHHHHHHhccCcCcceEEEEeCCEEEEEECCcCHHHHHhhhccccCCCcEEEEEEecCC
Confidence 999999997532 235677899999999999999986 2357899999999
Q ss_pred cCC--CCCCCceeeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHH---H-------Hhhhhcccc
Q 010213 54 IDP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEY---G-------ENFVDMLDG 119 (515)
Q Consensus 54 ~~~--~~~~qP~~~~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~---G-------~~~~~~l~G 119 (515)
.|. ..++||+.+..++++++|||+|||+++|+++| .|+.|.+.||+|+|+++|.++ | .+++++|+|
T Consensus 77 ~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~l~~~g~~~~~~sDsEvi~~l~~~~~~~g~~~~~a~~~~~~~l~G 156 (604)
T PRK00331 77 HGKPTERNAHPHTDCSGRIAVVHNGIIENYAELKEELLAKGHVFKSETDTEVIAHLIEEELKEGGDLLEAVRKALKRLEG 156 (604)
T ss_pred CCCCccccCCccccCCCCEEEEEeEEEcCHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHhccC
Confidence 996 35899999877899999999999999999999 688999999999999999887 5 568999999
Q ss_pred ceEEEEEECCC-CEEEEEecCCCcceeEEEEecCcEEEEEcCcccccccCCcceEeCCCeEEEecCCceE
Q 010213 120 MFSFVLLDTRD-NSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLK 188 (515)
Q Consensus 120 ~fa~v~~d~~~-~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~ 188 (515)
+|||++||..+ ++++++||+ |||||+.. ++.++||||+++|......+..|+||+++.++.++++
T Consensus 157 ~~a~~~~d~~~~~~l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~~~~~l~pg~~~~i~~~~~~ 222 (604)
T PRK00331 157 AYALAVIDKDEPDTIVAARNG---SPLVIGLG-EGENFLASDALALLPYTRRVIYLEDGEIAVLTRDGVE 222 (604)
T ss_pred eeEEEEEecCCCCEEEEEECC---CceEEEEc-CCeEEEEECHHHHHHhcCEEEEECCCeEEEEECCeEE
Confidence 99999999876 899999996 99999985 6789999999999998889999999999887655443
No 28
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=100.00 E-value=4.4e-32 Score=261.51 Aligned_cols=174 Identities=28% Similarity=0.384 Sum_probs=149.1
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhcccCCC-CCCceEEE------------------------------------CCE
Q 010213 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGP-DWSGLYQH------------------------------------GDF 44 (515)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGp-d~~g~~~~------------------------------------~~~ 44 (515)
|||+|+++..+... ....+..|+.+|+|||| |++|++.. +.+
T Consensus 1 CGI~G~~~~~~~~~-~~~~~~~~l~~lqhRG~~dsaGia~~~~~~~~~~s~~~~~~~~K~~G~~~~v~~~~~~~~~~~~~ 79 (249)
T cd01907 1 CGIFGIMSKDGEPF-VGALLVEMLDAMQERGPGDGAGFALYGDPDAFVYSSGKDMEVFKGVGYPEDIARRYDLEEYKGYH 79 (249)
T ss_pred CcEEEEEecCCccc-cHHHHHHHHHHHHhcCCCCCceEEEEcCCCeEEEecCCCeEEEeeccCHHHHHhhcCchheEEEE
Confidence 99999998642111 24567889999999999 99999874 247
Q ss_pred EEEEeeeeecCCC--CCCCceeeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHH----HHH-----
Q 010213 45 YLAHQRLAIIDPA--SGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEE----YGE----- 111 (515)
Q Consensus 45 ~l~h~rl~~~~~~--~~~qP~~~~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~----~G~----- 111 (515)
++||+|++|.+.. .++||+.. ++++++|||+|||+.+|+++| .|+.|.+.||+|++++++.+ +|.
T Consensus 80 ~igH~R~aT~g~~~~~n~qP~~~--~~~~lvhNG~I~N~~~lr~~L~~~g~~~~~~sDsEvi~~ll~~~~~~~g~~~~a~ 157 (249)
T cd01907 80 WIAHTRQPTNSAVWWYGAHPFSI--GDIAVVHNGEISNYGSNREYLERFGYKFETETDTEVIAYYLDLLLRKGGLPLEYY 157 (249)
T ss_pred EEEEEeccCCCCCCccCCCCeec--CCEEEEeCCeecCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhCCChHHHH
Confidence 8999999998852 58999986 479999999999999999999 68899999999999998864 232
Q ss_pred --------------------hhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCccccccc----
Q 010213 112 --------------------NFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD---- 167 (515)
Q Consensus 112 --------------------~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~---- 167 (515)
.++++++|+|+++++++ +.++++||++|.|||||+.. ++.++||||.++|...
T Consensus 158 ~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~--~~~~~~RD~~G~rPL~~g~~-~~~~~~ASE~~al~~~~~~~ 234 (249)
T cd01907 158 KHIIRMPEEERELLLALRLTYRLADLDGPFTIIVGTP--DGFIVIRDRIKLRPAVVAET-DDYVAIASEECAIREIPDRD 234 (249)
T ss_pred HHHhcCCHhHHHHHHHHHHHhCcccCCCCEEEEEEeC--CeEEEEecCCCCccEEEEEE-CCEEEEEEcHHHHhccCccc
Confidence 46799999999999997 67999999999999999985 6789999999999876
Q ss_pred CCcceEeCCCeEEE
Q 010213 168 CEHFEAFPPGHLYS 181 (515)
Q Consensus 168 ~~~i~~l~pG~~~~ 181 (515)
.+.+..++||+++.
T Consensus 235 ~~~~~~l~pGe~v~ 248 (249)
T cd01907 235 NAKVWEPRPGEYVI 248 (249)
T ss_pred hheEecCCCCceEe
Confidence 57788999999875
No 29
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=99.98 E-value=9.2e-32 Score=282.67 Aligned_cols=181 Identities=25% Similarity=0.423 Sum_probs=152.1
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEE---------------------------CCEEEEEeeeee
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH---------------------------GDFYLAHQRLAI 53 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~---------------------------~~~~l~h~rl~~ 53 (515)
||||+|+++.+. ....+..|+.+|+|||||+.|++.. +++++||+|++|
T Consensus 1 MCGI~Gi~~~~~----~~~~~~~~L~aLqHRGqdsaGi~~~~~~~~~~~k~~Glv~~vf~~~~l~~l~g~~~IGHvRysT 76 (501)
T PRK09246 1 MCGIVGIVGHSP----VNQSIYDALTVLQHRGQDAAGIVTIDGNRFRLRKANGLVRDVFRTRHMRRLQGNMGIGHVRYPT 76 (501)
T ss_pred CceEEEEEcCcC----HHHHHHHHHHHHhccCcceeEEEEEeCCEEEEEccCCccccccCcchHhhCCCCEEEEEEcCCc
Confidence 999999997632 2356778999999999999999872 468999999999
Q ss_pred cCCC--CCCCcee-eCCCcEEEEEeeEEcChHHHHHHh-c--CCCccCCChHHHHHHHHHHHH-----------------
Q 010213 54 IDPA--SGDQPLY-NEDKKIVVTVNGEIYNHEALRERL-T--NHKFRTGSDCDVIAHLYEEYG----------------- 110 (515)
Q Consensus 54 ~~~~--~~~qP~~-~~~~~~~~~~nGei~n~~~L~~~l-~--~~~~~~~~D~e~i~~~~~~~G----------------- 110 (515)
.|.. .+.||+. +..++++++|||+|+|+++|+++| . +..|.+.||+|+|++++.++.
T Consensus 77 ~G~~~~~n~QP~~~~~~~g~alahNG~I~N~~eLr~~L~~~~~~~f~s~sDsEvi~~li~~~l~~~~g~~~~~~~l~eai 156 (501)
T PRK09246 77 AGSSSSAEAQPFYVNSPYGITLAHNGNLTNAEELRKELFEKDRRHINTTSDSEVLLNVFAHELQKFRGLPLTPEDIFAAV 156 (501)
T ss_pred CCCCCcccCCCEEEeCCCCEEEEEeEEEcCHHHHHHHHHhcCCCeeecCCHHHHHHHHHHHHHHhccccccCccCHHHHH
Confidence 9963 5899997 444569999999999999999999 3 678999999999999998762
Q ss_pred HhhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEec---CcEEEEEcCccccccc-CCcceEeCCCeEEEecCCc
Q 010213 111 ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGL---DGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGG 186 (515)
Q Consensus 111 ~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~---~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~ 186 (515)
.+++++++|+|+++++.. .++++++||++|+|||||+... ++.++||||.++|... .+.|+.|+||+++.++.++
T Consensus 157 ~~~~~~l~Gays~v~~~~-~~~l~a~RDp~GirPL~~g~~~~~~~~~~~~ASE~~Al~~~g~~~ir~v~PGeiv~i~~~g 235 (501)
T PRK09246 157 AAVHRRVRGAYAVVAMII-GHGLVAFRDPHGIRPLVLGKRETEGGTEYMVASESVALDALGFEFVRDVAPGEAIYITEDG 235 (501)
T ss_pred HHHHHhcccceeeEEEec-CCcEEEEECCCCCCCeEEEeecCCCCCEEEEEECHHHHHhCCceEEEEeCCCeEEEEECCC
Confidence 157889999999997753 2679999999999999999752 3479999999999875 4668899999998886543
No 30
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.97 E-value=1.1e-30 Score=270.89 Aligned_cols=226 Identities=25% Similarity=0.360 Sum_probs=174.5
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEE---------------------------CCEEEEEeeeeec
Q 010213 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH---------------------------GDFYLAHQRLAII 54 (515)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~---------------------------~~~~l~h~rl~~~ 54 (515)
|||+|+++.+.. ....+..|+.+|+|||||++|++.. +++++||+|+++.
T Consensus 1 CGI~Gi~~~~~~---~~~~~~~~L~~lqhRG~ds~Gia~~d~~~~~~~k~~glv~~v~~~~~l~~l~g~~~IgHvR~aT~ 77 (442)
T TIGR01134 1 CGVVGIYSQEED---AASLTYYGLYALQHRGQEAAGIAVSDGNKIRTHKGNGLVSDVFDERHLERLKGNVGIGHVRYSTA 77 (442)
T ss_pred CEEEEEEcCCcc---HHHHHHHHHHHHHhhCccceEEEEEeCCEEEEEEcCCchhhhcchhhhhcccCcEEEEEEEecCC
Confidence 999999986422 2456778999999999999999753 3588999999999
Q ss_pred CCC--CCCCceee-CCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHH----------Hhhhhcccc
Q 010213 55 DPA--SGDQPLYN-EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG----------ENFVDMLDG 119 (515)
Q Consensus 55 ~~~--~~~qP~~~-~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G----------~~~~~~l~G 119 (515)
+.. .+.|||.. ..++++++|||+|+|+.+|+++| .|+.|.+.||+|+|+++|.+++ .+++++++|
T Consensus 78 G~~~~~n~QPf~~~~~~g~alahNG~I~N~~eLr~~L~~~g~~f~~~sDSEvi~~li~~~~~~~~~~~~ai~~~~~~l~G 157 (442)
T TIGR01134 78 GSSSLSNAQPFVVNSPGGIALAHNGNLVNAEELREELEEEGRIFNTTSDSEVLLHLLARERLEEDDLFEAIARVLKRVRG 157 (442)
T ss_pred CCCCccCCCCEEEeCCCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhcccCCHHHHHHHHHHHhCc
Confidence 863 58999984 44559999999999999999999 6788999999999999999876 478999999
Q ss_pred ceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCcccccc-cCCcceEeCCCeEEEecCCceEEe-eCCCCC-
Q 010213 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLND-DCEHFEAFPPGHLYSSKSGGLKRW-YNPTWY- 196 (515)
Q Consensus 120 ~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~-~~~~i~~l~pG~~~~~~~~~~~~~-~~~~~~- 196 (515)
+|+++++|. ++++++||++|.|||||+.. ++.++||||.++|.. ..+.|+.|+||+++.++.++++.+ +.+...
T Consensus 158 ~falvi~~~--~~L~a~RD~~G~rPL~~g~~-~~~~~~ASE~~al~~~g~~~~r~v~pGeiv~i~~~~~~~~~~~~~~~~ 234 (442)
T TIGR01134 158 AYALVIMIG--DGLIAVRDPHGIRPLVLGKR-GDGYVVASESCALDILGAEFIRDVEPGEAVVIDDGGLESRLFANTPRA 234 (442)
T ss_pred cceEEEEEC--CEEEEEECCCCCCCcEEEEe-CCEEEEEeCchHhcccCCcEEEEECCCeEEEEECCcEEEEeccCCCCc
Confidence 999999986 79999999999999999985 678999999999975 357899999999998876655432 111100
Q ss_pred -------cCCCCCC---CCcHHHHHHHHHHHHHHhhcc--ccceEEeec
Q 010213 197 -------SEAIPST---PYDPLVLRQAFENAVIKRLMT--DVPFGVLLS 233 (515)
Q Consensus 197 -------~~~~~~~---~~~~~~l~~~l~~aV~~rl~~--~~~v~v~LS 233 (515)
....|+. ...+.+.|..+-+.+.+.... |.-++|..|
T Consensus 235 ~c~fe~vYfarpds~~~g~~v~~~R~~~g~~La~~~~~~~D~Vv~VP~s 283 (442)
T TIGR01134 235 PCIFEYVYFARPDSVIDGISVYKARKRMGEKLARESPVEADVVIPVPDS 283 (442)
T ss_pred ceEEEEEEecCCcceECCeEHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 0012221 233556666666666665432 223445555
No 31
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=99.97 E-value=4.7e-31 Score=287.40 Aligned_cols=179 Identities=30% Similarity=0.487 Sum_probs=157.4
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEE---------------------------ECCEEEEEeeeeec
Q 010213 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQ---------------------------HGDFYLAHQRLAII 54 (515)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~---------------------------~~~~~l~h~rl~~~ 54 (515)
|||+|+++... ....+..|+..|+|||||++|++. .+.+++||+|++|.
T Consensus 1 CGI~g~~~~~~----~~~~~~~~l~~l~hRG~ds~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at~ 76 (607)
T TIGR01135 1 CGIVGYIGQRD----AVPILLEGLKRLEYRGYDSAGIAVVDEGKLFVRKAVGKVQELANKLGEKPLPGGVGIGHTRWATH 76 (607)
T ss_pred CeEEEEECCcc----HHHHHHHHHHHHhccCcccceEEEEeCCEEEEEECCcCHHHHHhhhhcccCCccEEEEEeeccCC
Confidence 99999997432 235678899999999999999987 23568999999999
Q ss_pred CC--CCCCCceeeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHHH----------hhhhccccc
Q 010213 55 DP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYGE----------NFVDMLDGM 120 (515)
Q Consensus 55 ~~--~~~~qP~~~~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G~----------~~~~~l~G~ 120 (515)
|. ..++||+...+++++++|||+|||+.+|+++| .|+.|.+.||+|+|+++|.+++. +++++|+|+
T Consensus 77 g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~tDsEvi~~l~~~~~~~~~~~~~ai~~~~~~l~G~ 156 (607)
T TIGR01135 77 GKPTEENAHPHTDEGGRIAVVHNGIIENYAELREELEARGHVFVSDTDTEVIAHLIEEYLREGGDLLEAVQKALKQLRGA 156 (607)
T ss_pred CCCCccCCCCcCcCCCCEEEEEecccCCHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcCc
Confidence 96 35899999888889999999999999999999 58899999999999999999885 689999999
Q ss_pred eEEEEEECCC-CEEEEEecCCCcceeEEEEecCcEEEEEcCcccccccCCcceEeCCCeEEEecCCceE
Q 010213 121 FSFVLLDTRD-NSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLK 188 (515)
Q Consensus 121 fa~v~~d~~~-~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~ 188 (515)
|||++||... ++++++||+ |||||+.. ++.++||||+++|......+..|+||+++.++.++++
T Consensus 157 ~a~~i~~~~~~~~l~~~Rd~---~PL~~~~~-~~~~~~aSE~~al~~~~~~~~~l~pg~~~~~~~~~~~ 221 (607)
T TIGR01135 157 YALAVLHADHPETLVAARSG---SPLIVGLG-DGENFVASDVTALLPVTRRVIYLEDGDIAILTRDGVR 221 (607)
T ss_pred eEEEEEecCCCCEEEEEECC---CceEEEEC-CCeEEEEEChHHHHhhCCEEEEeCCCeEEEEECCeeE
Confidence 9999999875 469999996 99999985 7789999999999998888999999999887655443
No 32
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type. Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
Probab=99.97 E-value=1.2e-30 Score=240.04 Aligned_cols=129 Identities=23% Similarity=0.387 Sum_probs=113.2
Q ss_pred CCceeeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHHHhhhhccccceEEEEEECCCCEEEEEe
Q 010213 60 DQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVAR 137 (515)
Q Consensus 60 ~qP~~~~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G~~~~~~l~G~fa~v~~d~~~~~l~~~r 137 (515)
.|++.+ +++++++||||||+.+|+++| .++.|++.||+|+|+++|++||.+++++|+|||||++||++ ++|+++|
T Consensus 44 ~~~~~~--~~~~iv~NGEIYN~~eLr~~L~~~g~~f~t~sDtEvll~~y~~~G~~~l~~L~G~FAfai~D~~-~~L~laR 120 (199)
T cd01909 44 VQVARS--ETGTAYLIGELYNRDELRSLLGAGEGRSAVLGDAELLLLLLTRLGLHAFRLAEGDFCFFIEDGN-GRLTLAT 120 (199)
T ss_pred eeEeeC--CCEEEEEEEEEeCHHHHHHHHHhcCCCcCCCCHHHHHHHHHHHHhHHHHHHcCEEEEEEEEcCC-CEEEEEE
Confidence 344433 469999999999999999999 57889999999999999999999999999999999999999 9999999
Q ss_pred cCCCcceeEEEEecCcEEEEEcCccccccc------------------CCcceEeCCCeEEEecCC-------ceEEeeC
Q 010213 138 DAIGITSLYIGWGLDGSIWISSELKGLNDD------------------CEHFEAFPPGHLYSSKSG-------GLKRWYN 192 (515)
Q Consensus 138 D~~G~~pLyy~~~~~~~~~faSe~~~l~~~------------------~~~i~~l~pG~~~~~~~~-------~~~~~~~ 192 (515)
|++|+|||||+.. +.++||||+|+|++. +++|++|+|||++.++.. ..++||.
T Consensus 121 Dr~GikPLYy~~~--~~l~FASEikaLla~~~~~~~~d~~~~~~~~T~~~gI~rL~PG~~l~~~~~g~~~~~~~~~~yW~ 198 (199)
T cd01909 121 DHAGSVPVYLVQA--GEVWATTELKLLAAHEGPKAFPFKSAGADTVSGLTGVQRVPPGTVNVLTFDGGSYGTAESRRTWT 198 (199)
T ss_pred CCCCCcCeEEEEC--CeEEEEeCHHHHhhCcCCCcccCcccCCCCCChhcCceEECCCcEEEEeeCCcccceEEEEEeec
Confidence 9999999999873 789999999999642 578999999999865421 3578997
Q ss_pred C
Q 010213 193 P 193 (515)
Q Consensus 193 ~ 193 (515)
|
T Consensus 199 p 199 (199)
T cd01909 199 P 199 (199)
T ss_pred C
Confidence 5
No 33
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=99.97 E-value=9.2e-30 Score=242.77 Aligned_cols=178 Identities=38% Similarity=0.594 Sum_probs=154.8
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEEC---------------------------CEEEEEeeeeec
Q 010213 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG---------------------------DFYLAHQRLAII 54 (515)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~---------------------------~~~l~h~rl~~~ 54 (515)
|||+|+++.+............|+..++|||||+.|++..+ .++++|+|+++.
T Consensus 1 Cgi~g~~~~~~~~~~~~~~~~~~~~~~~~rg~dg~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~R~at~ 80 (220)
T cd00352 1 CGIFGIVGADGAASLLLLLLLRGLAALEHRGPDGAGIAVYDGDGLFVEKRAGPVSDVALDLLDEPLKSGVALGHVRLATN 80 (220)
T ss_pred CEEEEEECCCCcchhhHHHHHHHHHhhcccCCccCCeEEECCCceEEEEeccchhhhhhhhhhhccCCCEEEEEeEeeec
Confidence 99999998765433211111468899999999999998765 689999999999
Q ss_pred CC--CCCCCceeeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHH---------Hhhhhccccce
Q 010213 55 DP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG---------ENFVDMLDGMF 121 (515)
Q Consensus 55 ~~--~~~~qP~~~~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G---------~~~~~~l~G~f 121 (515)
+. ..++||+....++++++|||+|+|+.+|+++| .+..+.+.||+|+++.+|.+|+ .+++++++|.|
T Consensus 81 g~~~~~n~hPf~~~~~~~~~~hNG~i~n~~~l~~~l~~~~~~~~~~tDse~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 160 (220)
T cd00352 81 GLPSEANAQPFRSEDGRIALVHNGEIYNYRELREELEARGYRFEGESDSEVILHLLERLGREGGLFEAVEDALKRLDGPF 160 (220)
T ss_pred CCCCCCCCCCcCcCCCCEEEEECcEEEcHHHHHHHHHHCCCeecCCCHHHHHHHHHHHHhccCCHHHHHHHHHHhCCccE
Confidence 85 46899998876789999999999999999998 4677889999999999999999 89999999999
Q ss_pred EEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCcccccccC-CcceEeCCCeE
Q 010213 122 SFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDC-EHFEAFPPGHL 179 (515)
Q Consensus 122 a~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~-~~i~~l~pG~~ 179 (515)
+++++|+.+++++++||++|.+||||....++.++||||..++.... +.+..|+||++
T Consensus 161 ~~~~~d~~~~~l~~~rd~~G~~pL~~~~~~~~~~~~aSe~~~~~~~~~~~~~~l~~g~~ 219 (220)
T cd00352 161 AFALWDGKPDRLFAARDRFGIRPLYYGITKDGGLVFASEPKALLALPFKGVRRLPPGEL 219 (220)
T ss_pred EEEEEECCCCEEEEEECCCCCCCeEEEEeCCCeEEEEecHHHHhhcCcccEEECCCCCC
Confidence 99999998899999999999999999985267899999999998765 67999999986
No 34
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.97 E-value=3.5e-30 Score=281.01 Aligned_cols=183 Identities=28% Similarity=0.457 Sum_probs=157.6
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEEC----------------------------------CEEE
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG----------------------------------DFYL 46 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~----------------------------------~~~l 46 (515)
||||+|+++... ....+..++..|+|||||++|++..+ ++++
T Consensus 24 MCGI~G~~~~~~----~~~~~~~~l~~L~hRG~ds~Gia~~~~~~~~~~~k~~g~g~v~~~~~~~~~~~~~~~~~~~~~i 99 (640)
T PTZ00295 24 CCGIVGYLGNED----ASKILLEGIEILQNRGYDSCGISTISSGGELKTTKYASDGTTSDSIEILKEKLLDSHKNSTIGI 99 (640)
T ss_pred CCeEEEEEcCcc----hHHHHHHHHHHHHhcCCCeeEEEEEeCCCcEEEEEeCCCCchHHHHHHHHHHhhcCCCCCcEEE
Confidence 999999997542 24567789999999999999998731 2489
Q ss_pred EEeeeeecCC--CCCCCceeeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHH---HH-------Hh
Q 010213 47 AHQRLAIIDP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEE---YG-------EN 112 (515)
Q Consensus 47 ~h~rl~~~~~--~~~~qP~~~~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~---~G-------~~ 112 (515)
||+|++|.|. ..++||+.+.+++++++|||+|||+.+||++| .|+.|.+.||+|+|++++.+ +| .+
T Consensus 100 gH~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~f~s~tDsEvi~~li~~~~~~g~~~~~a~~~ 179 (640)
T PTZ00295 100 AHTRWATHGGKTDENAHPHCDYKKRIALVHNGTIENYVELKSELIAKGIKFRSETDSEVIANLIGLELDQGEDFQEAVKS 179 (640)
T ss_pred EEeccccCCCCCcCCCCCCCCCCCCEEEEEEEEEcCHHHHHHHHHHCCCcccCCChHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 9999999996 35899999777899999999999999999999 68999999999999999863 33 36
Q ss_pred hhhccccceEEEEEECC-CCEEEEEecCCCcceeEEEEecCcEEEEEcCcccccccCCcceEeCCCeEEEecCCceEEee
Q 010213 113 FVDMLDGMFSFVLLDTR-DNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLKRWY 191 (515)
Q Consensus 113 ~~~~l~G~fa~v~~d~~-~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~~~~ 191 (515)
++++|+|+||+++||.. .++++++||+ |||||+.. ++.++||||.++|......+..|+||+++.++.++++.|.
T Consensus 180 ~~~~l~G~~a~~~~~~~~~~~l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~~~~~l~pGei~~i~~~~~~~~~ 255 (640)
T PTZ00295 180 AISRLQGTWGLCIIHKDNPDSLIVARNG---SPLLVGIG-DDSIYVASEPSAFAKYTNEYISLKDGEIAELSLENVNDLY 255 (640)
T ss_pred HHHHhhhhceEEEEEeCCCCEEEEEECC---CceEEEEc-CceEEEEechHHHHhhCcEEEEeCCCeEEEEECCeEEEEe
Confidence 89999999999999966 4799999997 99999985 6789999999999988888888999999988766665543
No 35
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=99.96 E-value=2e-28 Score=225.69 Aligned_cols=138 Identities=29% Similarity=0.562 Sum_probs=122.2
Q ss_pred CceeeCCCcEEEEEeeEEcChHHHHHHhcCCCccCCChHHHHHHHHHHH---H----HhhhhccccceEEEEEECCCCEE
Q 010213 61 QPLYNEDKKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEY---G----ENFVDMLDGMFSFVLLDTRDNSF 133 (515)
Q Consensus 61 qP~~~~~~~~~~~~nGei~n~~~L~~~l~~~~~~~~~D~e~i~~~~~~~---G----~~~~~~l~G~fa~v~~d~~~~~l 133 (515)
|-+.+.++++++++||||||+.+|+++|. . .++.+|+|+|+++|++| | .+++++|+|+|||++||.+++++
T Consensus 64 ~rl~~~~~~~~~vfnGeIyN~~eLr~~lg-~-~~t~sD~evIl~lY~~~~d~G~y~~~~~l~~L~G~FAFvi~D~~~~~l 141 (224)
T cd01910 64 PRLFAVKDDIFCLFQGHLDNLGSLKQQYG-L-SKTANEAMLVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDKKTSTV 141 (224)
T ss_pred CcEECCCCCEEEEEEeEEcCHHHHHHHhC-C-CCCCcHHHHHHHHHHHHHhcCCccHHHHHHhcCeEEEEEEEECCCCEE
Confidence 44566778899999999999999999983 2 36789999999999998 7 47999999999999999999999
Q ss_pred EEEecCCCcceeEEEEecCcEEEEEcCcccccccC-CcceEeCCCeEEEecCCceEEeeCCCCCcCCCC
Q 010213 134 IVARDAIGITSLYIGWGLDGSIWISSELKGLNDDC-EHFEAFPPGHLYSSKSGGLKRWYNPTWYSEAIP 201 (515)
Q Consensus 134 ~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~-~~i~~l~pG~~~~~~~~~~~~~~~~~~~~~~~~ 201 (515)
+++||++|++||||+...+|.++||||+++|...| +.+..+||||++.. .+++++|++|.|..+.+|
T Consensus 142 ~lARD~~Gi~PLYyg~~~dG~l~FASElkaL~~~c~~~~~~FPpG~~~~s-~ggl~~~~~p~~~~~~vp 209 (224)
T cd01910 142 FVASDADGSVPLYWGIAADGSVVFSDDVELVKASCGKSFAPFPKGCFFHS-EGGLRSFEHPMNKLKAVP 209 (224)
T ss_pred EEEEcCCCCcceEEEEeCCCEEEEEeCHHHhhhhhccEEEEECCCCEEeC-CCCEEEeeCCCchhhcCC
Confidence 99999999999999976578999999999999988 78999999999886 677999999988654444
No 36
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A.
Probab=99.96 E-value=5.8e-29 Score=215.03 Aligned_cols=119 Identities=44% Similarity=0.755 Sum_probs=75.0
Q ss_pred EeeeeecCCCCCCCcee-eCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHH---HHHhhhhccccce
Q 010213 48 HQRLAIIDPASGDQPLY-NEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEE---YGENFVDMLDGMF 121 (515)
Q Consensus 48 h~rl~~~~~~~~~qP~~-~~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~---~G~~~~~~l~G~f 121 (515)
|+||++.+...+.||+. +.+++++++|||+|||+++|+++| .|+.+.+.+|+|+++++|++ ||.+++++++|+|
T Consensus 1 h~rl~~~~~~~~~QP~~~~~~~~~~l~~nG~i~N~~eL~~~l~~~g~~~~~~~D~e~i~~~~~~~~~~~~~~~~~l~G~f 80 (125)
T PF13537_consen 1 HVRLSTDDSDEGAQPFVSSEDGELVLVFNGEIYNREELRRELEERGHQFSSDSDSELILHLYEEYREWGEDFLKRLDGPF 80 (125)
T ss_dssp ------------------------EEEEEEEES-HHHHHHTSSSS---S--SSHHHHHHHHHHH---HGGGGGGT--EEE
T ss_pred CcccccccccccccccccccccCEEEEEEEEEEChHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCceE
Confidence 89999977778999999 688889999999999999999999 46788999999999999987 9999999999999
Q ss_pred EEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCcccccc
Q 010213 122 SFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLND 166 (515)
Q Consensus 122 a~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~ 166 (515)
|+++||+.+++++++||++|+|||||+...++.++||||+++|++
T Consensus 81 a~v~~d~~~~~l~~~rD~~G~rpLyy~~~~g~~~~faSe~~~L~a 125 (125)
T PF13537_consen 81 AFVIWDKDKKRLFLARDRFGIRPLYYGRTDGNGLAFASEIKALLA 125 (125)
T ss_dssp EEEEEETTE--EEEEE-TT--S--EEEEETT-EEEEESSHHHHHT
T ss_pred EEEEEeCCCcEEEEEECCCCCCCeEEEEeCCCEEEEEEcHHHhcC
Confidence 999999998899999999999999999863369999999999864
No 37
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=99.95 E-value=8.8e-28 Score=262.27 Aligned_cols=185 Identities=23% Similarity=0.412 Sum_probs=153.9
Q ss_pred CeEEEEEEcCCCC--chHHHHHHHHHHHhcccCCCCCCceEEEC------------------------------------
Q 010213 1 MCGILAVLGCSDD--SQAKRVRVLELSRRLKHRGPDWSGLYQHG------------------------------------ 42 (515)
Q Consensus 1 McGI~G~~~~~~~--~~~~~~~~~~~~~~l~~RGpd~~g~~~~~------------------------------------ 42 (515)
||||+|+++.... .......+...+.+|+|||+|++|++..+
T Consensus 1 mCGI~g~~~~~~~~~~~~~~~~l~~gL~~Lq~RG~dsaGia~~~~~~~~~~~~~~~k~~G~~~~l~~~~~~~~~~~~l~~ 80 (680)
T PLN02981 1 MCGIFAYLNYNVPRERRFILEVLFNGLRRLEYRGYDSAGIAIDNDPSLESSSPLVFREEGKIESLVRSVYEEVAETDLNL 80 (680)
T ss_pred CceEEEEEccCCccccccHHHHHHHHHHHHhcCCcccceEEEEcCCcccccceEEEEcCCCHHHHHHHHhhhcccccccc
Confidence 9999999975310 11135677888999999999999998731
Q ss_pred ------CEEEEEeeeeecCC--CCCCCceeeC-CCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHH----HH
Q 010213 43 ------DFYLAHQRLAIIDP--ASGDQPLYNE-DKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHL----YE 107 (515)
Q Consensus 43 ------~~~l~h~rl~~~~~--~~~~qP~~~~-~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~----~~ 107 (515)
++++||+||+|.|. ..+.||+... .+.++++|||+|||+.+|+++| .|+.|.+.||+|+|+++ |.
T Consensus 81 ~~~~~g~~~IGH~R~at~g~~~~~n~qP~~~~~~~~ialvhNG~I~N~~eLr~~L~~~G~~f~s~tDtEvi~~li~~~~~ 160 (680)
T PLN02981 81 DLVFENHAGIAHTRWATHGPPAPRNSHPQSSGPGNEFLVVHNGIITNYEVLKETLLRHGFTFESDTDTEVIPKLAKFVFD 160 (680)
T ss_pred ccCCCCcEEEEEcccccCCCCCcCCCCCcccCCCCcEEEEECceEecHHHHHHHHHhCCCeeccCCHHHHHHHHHHHHHH
Confidence 26899999999996 3588999864 3789999999999999999999 78999999999999998 55
Q ss_pred HHHH------------hhhhccccceEEEEEECCC-CEEEEEecCCCcceeEEEEec--C--------------------
Q 010213 108 EYGE------------NFVDMLDGMFSFVLLDTRD-NSFIVARDAIGITSLYIGWGL--D-------------------- 152 (515)
Q Consensus 108 ~~G~------------~~~~~l~G~fa~v~~d~~~-~~l~~~rD~~G~~pLyy~~~~--~-------------------- 152 (515)
+||. +++++|+|+||+++.+... ++++++||+ +||+++... +
T Consensus 161 ~~~~~~~~~~~~~a~~~~~~~l~G~ya~~i~~~~~~~~i~~~r~~---~PL~iG~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (680)
T PLN02981 161 KLNEEEGDVTFSQVVMEVMRQLEGAYALIFKSPHYPNELVACKRG---SPLLLGVKELPEEKNSSAVFTSEGFLTKNRDK 237 (680)
T ss_pred hcccccCCCCHHHHHHHHHHhccCccceEEEecCCCCeEEEEecC---CceEEEecCccccccccccccccccccccccc
Confidence 5543 3899999999999999553 899999996 999998752 1
Q ss_pred -cEEEEEcCcccccccCCcceEeCCCeEEEecCCceE
Q 010213 153 -GSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLK 188 (515)
Q Consensus 153 -~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~ 188 (515)
+.+++|||.++|....+.|..|+||+++.++.++++
T Consensus 238 ~~~~~~aSe~~al~~~~~~~~~l~~gei~~i~~~~~~ 274 (680)
T PLN02981 238 PKEFFLASDASAVVEHTKRVLVIEDNEVVHLKDGGVG 274 (680)
T ss_pred CCcEEEEeCHHHHHHhcCEEEEECCCeEEEEECCeEE
Confidence 369999999999999999999999999888765443
No 38
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.95 E-value=1.3e-27 Score=259.78 Aligned_cols=184 Identities=21% Similarity=0.327 Sum_probs=154.8
Q ss_pred CeEEEEEEcCCCC--chHHHHHHHHHHHhcccCCCCCCceEEE-----------------C-------------------
Q 010213 1 MCGILAVLGCSDD--SQAKRVRVLELSRRLKHRGPDWSGLYQH-----------------G------------------- 42 (515)
Q Consensus 1 McGI~G~~~~~~~--~~~~~~~~~~~~~~l~~RGpd~~g~~~~-----------------~------------------- 42 (515)
||||+|+++.... .......+...+..|+|||+|++|+... +
T Consensus 1 mCGI~g~~~~~~~~~~~~~~~~~~~gL~~Le~RG~dsaGia~~~~~~~~~~~~~~~~~~~~~~~~~k~~G~v~~l~~~~~ 80 (670)
T PTZ00394 1 MCGIFGYANHNVPRTVEQILNVLLDGIQKVEYRGYDSAGLAIDANIGSEKEDGTAASAPTPRPCVVRSVGNISQLREKVF 80 (670)
T ss_pred CceEEEEECCCCccccccHHHHHHHHHHHHhccCcccceEEEecCcccccccccccccCCCcEEEEECCccHHHHHHHHh
Confidence 9999999985410 0013456778899999999999998875 1
Q ss_pred -----------------CEEEEEeeeeecCC--CCCCCceeeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHH
Q 010213 43 -----------------DFYLAHQRLAIIDP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDV 101 (515)
Q Consensus 43 -----------------~~~l~h~rl~~~~~--~~~~qP~~~~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~ 101 (515)
++++||+||+|.|. ..+.||+.+.+++++++|||+|||+.+||++| .|+.|++.||||+
T Consensus 81 ~~~~~~~~~~~~~~~~g~~~igH~R~at~g~~~~~n~qP~~~~~~~i~vvhNG~I~N~~eLr~~L~~~g~~f~s~tDtEv 160 (670)
T PTZ00394 81 SEAVAATLPPMDATTSHHVGIAHTRWATHGGVCERNCHPQQSNNGEFTIVHNGIVTNYMTLKELLKEEGYHFSSDTDTEV 160 (670)
T ss_pred cchhhhhccccccCCCCCEEEEEeeceecCCCCcCCCCCcCCCCCCEEEEECeeEecHHHHHHHHHHcCCEecCCChHHH
Confidence 15899999999996 35889999888999999999999999999999 7999999999999
Q ss_pred HHHH----HHHHHH--------hhhhccccceEEEEEEC-CCCEEEEEecCCCcceeEEEEecC----------------
Q 010213 102 IAHL----YEEYGE--------NFVDMLDGMFSFVLLDT-RDNSFIVARDAIGITSLYIGWGLD---------------- 152 (515)
Q Consensus 102 i~~~----~~~~G~--------~~~~~l~G~fa~v~~d~-~~~~l~~~rD~~G~~pLyy~~~~~---------------- 152 (515)
|+++ |.+||. +++++|+|+||+++... ..++++++||+ +||+++...+
T Consensus 161 i~~li~~~~~~~g~~~~~~a~~~~~~~l~G~ya~~i~~~~~~~~l~~~Rd~---~PL~iG~~~~~~~~~~~~~~~~~~~~ 237 (670)
T PTZ00394 161 ISVLSEYLYTRKGIHNFADLALEVSRMVEGSYALLVKSVYFPGQLAASRKG---SPLMVGIRRTDDRGCVMKLQTYDLTD 237 (670)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHccCceEEEEEecCCCCEEEEEEcC---CceEEEeccccccccccccccccccc
Confidence 9976 445563 78999999999999863 23899999999 9999998531
Q ss_pred ----cEEEEEcCcccccccCCcceEeCCCeEEEecCCce
Q 010213 153 ----GSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGL 187 (515)
Q Consensus 153 ----~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~ 187 (515)
+.++||||+.+|...++.|..|++|++..+..+.+
T Consensus 238 ~~~~~~~~~aSd~~a~~~~t~~~~~l~dg~~~~~~~~~~ 276 (670)
T PTZ00394 238 LSGPLEVFFSSDVNSFAEYTREVVFLEDGDIAHYCDGAL 276 (670)
T ss_pred cCCCCcEEEEeChHHHHHhhceEEEecCCeEEEEECCEE
Confidence 47999999999999999999999999987765543
No 39
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.95 E-value=1.2e-26 Score=230.11 Aligned_cols=239 Identities=24% Similarity=0.330 Sum_probs=179.5
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEECC----------------------------EEEEEeeee
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGD----------------------------FYLAHQRLA 52 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~----------------------------~~l~h~rl~ 52 (515)
||||+|+++.+.. + ..+.+..++.+|+|||+++.|+...++ +++||+|++
T Consensus 4 ~CGV~Gi~~~~~~-~-a~~~~y~gL~aLQHRGQeaAGI~~~dg~~~~~~K~~GLV~dvF~~~~~~~~l~G~~~IGHvRYs 81 (470)
T COG0034 4 MCGVFGIWGHKDN-N-AAQLTYYGLYALQHRGQEAAGIAVADGKRFHTHKGMGLVSDVFNERDLLRKLQGNVGIGHVRYS 81 (470)
T ss_pred cceEEEEecCCcc-c-hHHHHHHHHHHHhhCCcccccEEEEcCceEEEEecCccchhhcCchhhhhhccCcceeeEeeec
Confidence 9999999987652 2 356788899999999999999976552 378999999
Q ss_pred ecCCC--CCCCceeeC--CCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHH---------Hhhhhcc
Q 010213 53 IIDPA--SGDQPLYNE--DKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG---------ENFVDML 117 (515)
Q Consensus 53 ~~~~~--~~~qP~~~~--~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G---------~~~~~~l 117 (515)
+.|.. .+.||+... .+.+.++|||.|-|..+|+++| .|..|.++||+|++++++.+.. ...++.+
T Consensus 82 TaG~s~~~naQP~~~~~~~g~ialaHNGnl~N~~~Lr~~l~~~g~~f~t~sDsEvll~l~a~~~~~~~~~~a~~~~~~~v 161 (470)
T COG0034 82 TAGSSSIENAQPFYVNSPGGGIALAHNGNLVNAEELRRELEEEGAIFNTTSDSEVLLHLLARELDEDDIFEAVKEVLRRV 161 (470)
T ss_pred CCCCcccccccceEEecCCCcEEEEecCcccCHHHHHHHHHhcCceecCCccHHHHHHHHHhhcccccHHHHHHHHHhhc
Confidence 99954 588999754 4579999999999999999999 7888999999999999998643 4577899
Q ss_pred ccceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCccccccc-CCcceEeCCCeEEEe--cCCceEE--eeC
Q 010213 118 DGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSS--KSGGLKR--WYN 192 (515)
Q Consensus 118 ~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~--~~~~~~~--~~~ 192 (515)
.|.|++++... +.|+.+|||.|+|||.++...+|.++||||..+|... .+-++.|+||+++.+ +..++.. +..
T Consensus 162 ~G~ys~v~~~~--~~lia~RDP~GiRPL~iG~~~dG~yvvaSEt~Ald~iGa~~vRdv~pGE~v~i~~~~~g~~s~~~~~ 239 (470)
T COG0034 162 KGAYALVALIK--DGLIAVRDPNGIRPLVLGKLGDGFYVVASETCALDILGAEFVRDVEPGEAVIITIDGDGLESKQVAE 239 (470)
T ss_pred CCcEEEEEEEC--CeEEEEECCCCCccceeeecCCCCEEEEechhhhhcccceEEEecCCceEEEEEecCceeEEEeccC
Confidence 99999999988 6999999999999999998645669999999999765 455789999999774 3322322 222
Q ss_pred CCCC--------cCCCCCC---CCcHHHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHH
Q 010213 193 PTWY--------SEAIPST---PYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITA 246 (515)
Q Consensus 193 ~~~~--------~~~~~~~---~~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~ 246 (515)
+... ....|+. ...+-..|..+-+.+.+...-+. =.+.|=-||+.-+|+-.
T Consensus 240 ~~~~~~C~fEyVYFARPDS~Idg~sVy~~R~~mG~~La~e~~~ea---DvVipVPDSg~~aAig~ 301 (470)
T COG0034 240 PPRRAPCSFEYVYFARPDSVIDGISVYEARKRMGEKLAEEIPVEA---DVVIPVPDSGRPAAIGY 301 (470)
T ss_pred CCCCccceEEEEEeecCccccCCeeHHHHHHHHHHHHHHhCCccc---cEEEecCCCChHHHHHH
Confidence 2110 0122322 22345566666555554432222 13556689998877643
No 40
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.94 E-value=5.3e-26 Score=218.17 Aligned_cols=187 Identities=22% Similarity=0.375 Sum_probs=153.1
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEEC----------------------------CEEEEEeeee
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG----------------------------DFYLAHQRLA 52 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~----------------------------~~~l~h~rl~ 52 (515)
||||+|++....-.. -..+.....+|+|||+|+.|+...+ ++++||+|++
T Consensus 1 eCGv~Gi~~a~~~~~--l~~l~~~~~aLQHRGQesAGIvts~~~~~~~~~kG~Gmv~dVFte~~l~~L~g~~gIGH~RYs 78 (474)
T KOG0572|consen 1 ECGVFGIVAAGEASR--LPELALGCVALQHRGQESAGIVTSGGRGRLYQIKGMGLVSDVFTEDKLSQLPGSIGIGHTRYS 78 (474)
T ss_pred CCcEEEEEecCcccc--CcHHHhhhHHHhhCCccccceEeecCCCceEEEeccchhhhhhcHHHHhhCccceeeeeeecc
Confidence 999999997654321 1223333468999999999998765 4899999999
Q ss_pred ecCCC--CCCCceeeC--CCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHH-----H----------H
Q 010213 53 IIDPA--SGDQPLYNE--DKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEY-----G----------E 111 (515)
Q Consensus 53 ~~~~~--~~~qP~~~~--~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~-----G----------~ 111 (515)
+.|.+ .+.|||.-. -|.+.++|||++-|+++||++| .|+.+.|.||+|+|++++... + .
T Consensus 79 TaG~s~~~n~QPFvv~t~~G~lavAHNGnLVN~~~Lrr~l~~~g~~l~T~SDSElil~~~a~~~~~~~~~~~~d~~~ri~ 158 (474)
T KOG0572|consen 79 TAGSSALSNVQPFVVNTPHGSLAVAHNGNLVNYKSLRRELLEEGVGLNTSSDSELILQLIAYAPEDVYRVDAPDWFARIR 158 (474)
T ss_pred cccccccccccceEeeccCceEEEeccCcccchHHHHHHHHhcCcccccCCcHHHHHHHHHhchHhhhcccCccHHHHHH
Confidence 99864 589999743 4779999999999999999999 788999999999999988542 1 4
Q ss_pred hhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEecC----cEEEEEcCccccccc-CCcceEeCCCeEEEecCCc
Q 010213 112 NFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLD----GSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGG 186 (515)
Q Consensus 112 ~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~----~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~ 186 (515)
.+++.++|.|++++.-. ++|+.+||++|.|||..+.... ..+++|||..+|... .+-.++|.||+++.+....
T Consensus 159 ~~~~~~~g~Yslv~m~~--d~l~avRDp~G~RPL~iG~r~~~~g~~~~v~aSESc~f~~i~a~y~Rev~PGEiV~i~r~g 236 (474)
T KOG0572|consen 159 DVMELLPGAYSLVFMTA--DKLYAVRDPYGNRPLCIGRRSNPDGTEAWVVASESCAFLSIGARYEREVRPGEIVEISRNG 236 (474)
T ss_pred HHHHhcCCceeEEEEEc--cEEEEEecCCCCccceEeeecCCCCcceEEEEecceeeeecccEEEEeecCceEEEEecCC
Confidence 67889999999999987 7799999999999999987432 279999999999876 6677899999998886655
Q ss_pred eEEee
Q 010213 187 LKRWY 191 (515)
Q Consensus 187 ~~~~~ 191 (515)
.+.-|
T Consensus 237 ~~s~~ 241 (474)
T KOG0572|consen 237 VKSVD 241 (474)
T ss_pred ceeee
Confidence 44443
No 41
>PF13522 GATase_6: Glutamine amidotransferase domain
Probab=99.94 E-value=4e-26 Score=199.06 Aligned_cols=127 Identities=36% Similarity=0.677 Sum_probs=115.6
Q ss_pred CCCCce--EEECCEEEEEeeeeecCCC--CCCCceeeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHH
Q 010213 33 PDWSGL--YQHGDFYLAHQRLAIIDPA--SGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLY 106 (515)
Q Consensus 33 pd~~g~--~~~~~~~l~h~rl~~~~~~--~~~qP~~~~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~ 106 (515)
||..++ +..+.+++||+|+++.|.. .++||+.+.+++++++|||+|+|+.+|+++| .++.|++.||+|+|++++
T Consensus 1 pd~~~~~~~~~~~~~lgH~R~AT~G~~~~~~~hPf~~~~g~~~~~HNG~i~n~~~L~~~l~~~g~~~~~~tDSEii~~li 80 (133)
T PF13522_consen 1 PDFEGLASWLDGEAALGHTRYATVGSPTEENNHPFSNRDGRIALAHNGNIDNYKELREELGEKGHPFESDTDSEIIAALI 80 (133)
T ss_pred CChHHHHHhcCCCEEEEEeecCCCCCCCCcCCCCCcCCCCCEEEEECCeecCHHHHHHHHHHCCCcccCCCHHHHHHHHH
Confidence 566666 5667799999999999964 4669997777889999999999999999999 588899999999999999
Q ss_pred HHHHHhhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcC
Q 010213 107 EEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSE 160 (515)
Q Consensus 107 ~~~G~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe 160 (515)
+++|.++++.++|+|++++++...++++++||++|.+||||+.. ++.++||||
T Consensus 81 ~~~g~~~l~~l~G~~a~~~~~~~~~~l~~~rd~~g~~PL~~~~~-~~~~~~ASE 133 (133)
T PF13522_consen 81 HRWGEEALERLDGAFAFAVYDKTPNKLFLARDPLGIRPLYYGRD-GDGYVFASE 133 (133)
T ss_pred HHHHHHHHHHhcCceEEEEEEcCCCEEEEEEcCCCCCCEEEEEc-CCEEEEEeC
Confidence 99999999999999999999988899999999999999999985 788999998
No 42
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=6.6e-25 Score=227.91 Aligned_cols=179 Identities=28% Similarity=0.455 Sum_probs=154.7
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEEC---------------------------CEEEEEeeeee
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG---------------------------DFYLAHQRLAI 53 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~---------------------------~~~l~h~rl~~ 53 (515)
||||+|+++.+.. ....+.+.++.|.|||.|++|++..+ .+++||+||++
T Consensus 1 MCGIvG~i~~~~~---~~~il~~gL~rLEYRGYDSaGiav~~~~~l~~~k~~Gkv~~l~~~~~~~~~~~~~gIgHTRWAT 77 (597)
T COG0449 1 MCGIVGYIGFLRE---AIDILLEGLKRLEYRGYDSAGIAVVGDGSLNVRKQVGKISNLEELLNKEPLIGGVGIAHTRWAT 77 (597)
T ss_pred CCcEEEEEcCCcc---HHHHHHHHHHHHHccCCCcccEEEEeCCeEEEEEccCCHHHHHhhhcccccCCceeeeeccccC
Confidence 9999999965432 35678888999999999999998753 48899999999
Q ss_pred cCCC--CCCCceeeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHH--------Hhhhhccccce
Q 010213 54 IDPA--SGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLDGMF 121 (515)
Q Consensus 54 ~~~~--~~~qP~~~~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G--------~~~~~~l~G~f 121 (515)
.|.. .++||..+ +++++||||.|-|+.+||++| .|+.|+++||||+|.++++++= ...+++|.|.|
T Consensus 78 HG~P~~~NAHPh~~--~~~avVHNGIIeN~~eLr~eL~~~G~~F~S~TDTEVi~hLi~~~~~~~~~~a~~~~l~~l~Gsy 155 (597)
T COG0449 78 HGGPTRANAHPHSD--GEFAVVHNGIIENFAELKEELEAKGYVFKSDTDTEVIAHLLEEIYDTSLLEAVKKVLKRLEGSY 155 (597)
T ss_pred CCCCCcCCCCCCCC--CCEEEEeCchhhCHHHHHHHHHhcCCEEecCCchHHHHHHHHHHHHhHHHHHHHHHHHHhccee
Confidence 9943 58999976 889999999999999999999 7999999999999999997642 35789999999
Q ss_pred EEEEEECCC-CEEEEEecCCCcceeEEEEecCcEEEEEcCcccccccCCcceEeCCCeEEEecCCceE
Q 010213 122 SFVLLDTRD-NSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLK 188 (515)
Q Consensus 122 a~v~~d~~~-~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~ 188 (515)
|+++.|... ++++++|.. .||..+.. ++..++||++.+++...+.+..|..|++..+..+++.
T Consensus 156 al~~~~~~~p~~i~~ar~~---sPL~iG~g-~~e~f~aSD~~a~l~~t~~~~~l~dgd~~~~~~~~v~ 219 (597)
T COG0449 156 ALLCTHSDFPDELVAARKG---SPLVIGVG-EGENFLASDVSALLNFTRRFVYLEEGDIAKLTTDGVS 219 (597)
T ss_pred EEEEEecCCCCeEEEEcCC---CCeEEEec-CCcceEecChhhhhhhhceEEEeCCCCEEEEECCcEE
Confidence 999999876 689999996 99999985 7788999999999999998988999988766555443
No 43
>TIGR03442 conserved hypothetical protein TIGR03442. Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
Probab=99.80 E-value=1.3e-18 Score=167.67 Aligned_cols=174 Identities=23% Similarity=0.243 Sum_probs=132.4
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCC------------CCCceEEEC--------------------------
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGP------------DWSGLYQHG-------------------------- 42 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGp------------d~~g~~~~~-------------------------- 42 (515)
||+|+|+++.+.. ....+..-...|.+|+- |+.|+....
T Consensus 1 MCr~~gy~g~~~~---l~~~l~~~~~sL~~qs~~~~~~~~~~~~~DGwGia~~~~~~~~~~~~~k~~~pa~~d~~l~~l~ 77 (251)
T TIGR03442 1 MCRHLAYLGAPVS---LADLLLDPPHSLLVQSYQPREMRHGLVNADGFGVGWYDSGKDTVPFRYRSTQPIWNDINFASLA 77 (251)
T ss_pred CceEeeecCCCee---HHHheeCCCcchHHhCcchhhhcCCCcCCCcceEEEecCCCCCCceEEeCCCccccChhHHHHH
Confidence 9999999986321 23344444455555543 888876531
Q ss_pred -----CEEEEEeeeeecCC-C--CCCCceeeCCCcEEEEEeeEEcChH-----HHHHHh--cCC-CccCCChHHHHHHHH
Q 010213 43 -----DFYLAHQRLAIIDP-A--SGDQPLYNEDKKIVVTVNGEIYNHE-----ALRERL--TNH-KFRTGSDCDVIAHLY 106 (515)
Q Consensus 43 -----~~~l~h~rl~~~~~-~--~~~qP~~~~~~~~~~~~nGei~n~~-----~L~~~l--~~~-~~~~~~D~e~i~~~~ 106 (515)
.++++|.|.++.|. . .++|||.. ++++++|||.|.|++ +|+++| .++ .+.+.||+|++++++
T Consensus 78 ~~~~s~~~i~HvR~AT~G~~~~~~N~hPf~~--g~~~~aHNG~i~n~~~~~r~~L~~~l~~~~~~~~~g~TDSE~i~~li 155 (251)
T TIGR03442 78 RYVESGCVLAAVRSATVGMAIDESACAPFSD--GRWLFSHNGFVDNFRQTLYRPLRDRLPDIFYLAIEGSTDSAHLFALL 155 (251)
T ss_pred hhcccceEEEEeeeCCCCCCcchhcCCCCCc--CCEEEEeCCccCCchhhhhHHHHhcCChhhccCCCCCCHHHHHHHHH
Confidence 47899999999983 2 59999985 689999999999997 566666 343 688999999999988
Q ss_pred HHHHH------------hhhhccccc-------eEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCccccccc
Q 010213 107 EEYGE------------NFVDMLDGM-------FSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD 167 (515)
Q Consensus 107 ~~~G~------------~~~~~l~G~-------fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~ 167 (515)
.+... ++++.+.|. |++++.|+ .+++++||+. ||||... ++.++||||. |-..
T Consensus 156 ~~~~~~~~~~~~~~ai~~~~~~l~~~~~~~~~~~n~~~sdg--~~l~a~R~~~---~L~~~~~-~~~~vvASEp--l~~~ 227 (251)
T TIGR03442 156 LNRLLENDPRALEEALAEVLLILFSAAAAPRVRLNLLLTDG--SRLVATRWAD---TLYWLKD-PEGVIVASEP--YDDD 227 (251)
T ss_pred HHHHhhcCCchHHHHHHHHHHHHHHHhhCcccceEEEEEcC--CEEEEEEeCC---eEEEEEc-CCEEEEEeCC--cCCC
Confidence 76531 356666777 99999998 8999999986 9999875 5689999997 4332
Q ss_pred CCcceEeCCCeEEEecCCceE
Q 010213 168 CEHFEAFPPGHLYSSKSGGLK 188 (515)
Q Consensus 168 ~~~i~~l~pG~~~~~~~~~~~ 188 (515)
..++.|+||+++.+++++++
T Consensus 228 -~~W~~v~pge~v~i~~~~v~ 247 (251)
T TIGR03442 228 -PGWQDVPDRHLLSVSEDDVT 247 (251)
T ss_pred -CCceEeCCCeEEEEECCcEE
Confidence 48999999999998776543
No 44
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]
Probab=99.75 E-value=9.5e-18 Score=167.50 Aligned_cols=186 Identities=23% Similarity=0.348 Sum_probs=137.2
Q ss_pred CeEEEEEEcCCCCch--HHHHHHHHHHHhcccCCCCCCceEEEC-----------------------------------C
Q 010213 1 MCGILAVLGCSDDSQ--AKRVRVLELSRRLKHRGPDWSGLYQHG-----------------------------------D 43 (515)
Q Consensus 1 McGI~G~~~~~~~~~--~~~~~~~~~~~~l~~RGpd~~g~~~~~-----------------------------------~ 43 (515)
||||||+.+.-.... ..-.++...++.|.+||.|++|+..++ .
T Consensus 1 MCGIF~Y~N~l~~R~R~eIid~Li~GLqRLEYRGYDSaGiaId~~~~~s~~~~k~~GkVkaL~e~i~~q~~~l~~~f~sH 80 (670)
T KOG1268|consen 1 MCGIFGYCNFLIERTRGEIIDTLIDGLQRLEYRGYDSAGIAIDGDELESLLIYKQTGKVSSLKEEINNQNLNLDEKFISH 80 (670)
T ss_pred CcceeeeeccccCCcHHHHHHHHHHHHHHhhccCCCCCceeecCCcccchhhhcccCceeehhHHHhhcCcccceeeeee
Confidence 999999998644322 123455566788999999999998765 4
Q ss_pred EEEEEeeeeecCC--CCCCCceeeC-CCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHH----H----
Q 010213 44 FYLAHQRLAIIDP--ASGDQPLYNE-DKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEY----G---- 110 (515)
Q Consensus 44 ~~l~h~rl~~~~~--~~~~qP~~~~-~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~----G---- 110 (515)
++++|+|||+.|. ..++||..+. .+.++++|||-|.|+++|+..| +|+.|+++||||.++.++... +
T Consensus 81 ~gIAHTRWATHGvPs~~NsHP~rSd~~n~FvVVHNGIITNyk~lK~~L~~kG~~FESdTDTEciaKL~~~~~D~~~~~~~ 160 (670)
T KOG1268|consen 81 CGIAHTRWATHGVPSEVNCHPHRSDPSNEFVVVHNGIITNFKELKALLEKKGYVFESDTDTECIAKLYKHIYDTSPEDLD 160 (670)
T ss_pred eeeeeeehhhcCCCCccCCCCCcCCCCCcEEEEEcCeeccHHHHHHHHHhcCceeecccchHHHHHHHHHHHhhCCCccc
Confidence 8899999999994 3589999864 5779999999999999999999 799999999999999988752 2
Q ss_pred -----HhhhhccccceEEEEEECC-CCEEEEEecC----CCcc----------eeEEEEe--------------------
Q 010213 111 -----ENFVDMLDGMFSFVLLDTR-DNSFIVARDA----IGIT----------SLYIGWG-------------------- 150 (515)
Q Consensus 111 -----~~~~~~l~G~fa~v~~d~~-~~~l~~~rD~----~G~~----------pLyy~~~-------------------- 150 (515)
...+++++|.|++++-... -+++...|+- .|.| |+-|...
T Consensus 161 F~~lv~~v~k~lEGaFalvfkS~hfP~e~Va~RrgSPlliGvKs~~kls~d~~~V~y~~~~~~~~~~~~~~d~~~~~~~~ 240 (670)
T KOG1268|consen 161 FHVLVELVLKELEGAFGLLFKSSHFPGEVVAARKGSPLLIGVKSKTKLSVDFFPVEYGDTQEVSYLKLNKTDTKASLHFL 240 (670)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhcCCcceeeeccCCcceeeecccccccccceeeeccccceecccccCCcccccccccc
Confidence 3468899999999863221 1567777774 1221 1222110
Q ss_pred cCc--EEEEEcCcccccccCCcceEeCCCeEEEecCCc
Q 010213 151 LDG--SIWISSELKGLNDDCEHFEAFPPGHLYSSKSGG 186 (515)
Q Consensus 151 ~~~--~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~ 186 (515)
.+. .++|||+..++.++.+.|--|+-+.+..+.+|+
T Consensus 241 ~~~~vEff~aSDasa~IEhT~rV~flEDddia~v~dG~ 278 (670)
T KOG1268|consen 241 AGSPVEFFTASDASALIEHTKRVLFLEDDDIAHVSDGE 278 (670)
T ss_pred cCCceEEEEecCcchhheecceeEEeccCcEEEEecCc
Confidence 011 577888888887777777667777776665554
No 45
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group. This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....
Probab=99.71 E-value=3.6e-16 Score=157.38 Aligned_cols=111 Identities=29% Similarity=0.407 Sum_probs=85.2
Q ss_pred CEEEEEeeeeecCCC--CCCCceeeCCCcEEEEEeeEEcChHHHHHHh--cCCCccC----------------CChHHHH
Q 010213 43 DFYLAHQRLAIIDPA--SGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRT----------------GSDCDVI 102 (515)
Q Consensus 43 ~~~l~h~rl~~~~~~--~~~qP~~~~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~----------------~~D~e~i 102 (515)
.++++|+|++|.+.. .++|||. +++|||||.|...+++.+ .+..+.+ .||+|++
T Consensus 196 ~~~i~H~RysTnt~p~w~~AqPf~------~laHNGeInt~~~n~~~l~~r~~~~~~~~~~~~~~~~pi~~~~~SDS~~l 269 (361)
T PF00310_consen 196 HFAIGHQRYSTNTFPSWENAQPFR------ALAHNGEINTIRGNRNWLEARGYKLNSPLFGDLKELLPIVNPGGSDSEVL 269 (361)
T ss_dssp SEEEEEEEE-SSSSCSGGGSSSEE------EEEEEEEETTHHHHHHHHHHHCCCBSSTTCGHHHCC-SSS-TTS-HHHHH
T ss_pred eEEEEEEecCCCCCCcchhcChHH------HhhhccccccHHHHHHHHHhhcccccCccccchhhcccccCCCCChHHHH
Confidence 589999999999854 4899997 799999999999999998 4566655 8999998
Q ss_pred HHHHHHH---H--------------------------------HhhhhccccceEEEEEECCCCEEEEEecCCCcceeEE
Q 010213 103 AHLYEEY---G--------------------------------ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYI 147 (515)
Q Consensus 103 ~~~~~~~---G--------------------------------~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy 147 (515)
..+++.. | ..+++.++|.|++++.|. +.+++++||.|.||+.|
T Consensus 270 ~~~le~l~~~g~~l~~a~~~l~p~~~~~~~~~~~~~~~~y~~~~~~~~~~dGPaai~~~~g--~~~~a~~Dr~GLRP~~~ 347 (361)
T PF00310_consen 270 DNLLELLLRRGRSLEEAMMMLIPPAWENDEDMSPEKRAFYEYHASLMEPWDGPAAIIFTDG--NGVGAFLDRNGLRPLRY 347 (361)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHSGG--TTSCCSTHHHHHHHHHHHHHHCC--CCEEEEEECS--SEEEEEE-TT--S--EE
T ss_pred HHHHHHHHhcCCCHHHHHHhhCCcccccCccCCHHHHHHHHHHHHhhccCCCceEEEEEeC--CEEEEEECCCCCcceEE
Confidence 7776532 2 124678999999999988 67999999999999999
Q ss_pred EEecCcEEEEEcCc
Q 010213 148 GWGLDGSIWISSEL 161 (515)
Q Consensus 148 ~~~~~~~~~faSe~ 161 (515)
+...++.+++|||.
T Consensus 348 ~~~~d~~~v~aSE~ 361 (361)
T PF00310_consen 348 GITEDGLVVLASEA 361 (361)
T ss_dssp EEETTCEEEEESST
T ss_pred EEECCCEEEEEeCC
Confidence 98767889999983
No 46
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.70 E-value=1.9e-16 Score=154.13 Aligned_cols=134 Identities=24% Similarity=0.283 Sum_probs=111.3
Q ss_pred CEEEEEeeeeecCC--CCCCCceeeCCCcEEEEEeeEEcChHHHHHHh--cC-CCccCCChHHHHHHHHHHHH-------
Q 010213 43 DFYLAHQRLAIIDP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TN-HKFRTGSDCDVIAHLYEEYG------- 110 (515)
Q Consensus 43 ~~~l~h~rl~~~~~--~~~~qP~~~~~~~~~~~~nGei~n~~~L~~~l--~~-~~~~~~~D~e~i~~~~~~~G------- 110 (515)
.++++|+|+++.+. ..+.|||.. ++++++|||.|.|+.+|+..+ .+ ..+.+.||+|++++++.+..
T Consensus 81 ~~~l~H~R~At~G~~~~~n~hPf~~--~~~~~~HNG~i~n~~~l~~~l~~~~~~~~~~~tDSE~~~~li~~~l~~~~~~~ 158 (257)
T cd01908 81 PLVLAHVRAATVGPVSLENCHPFTR--GRWLFAHNGQLDGFRLLRRRLLRLLPRLPVGTTDSELAFALLLSRLLERDPLD 158 (257)
T ss_pred cEEEEEEecCCCCCCccccCCCccc--CCEEEEeCCccCCcchhhHHHHhcCccCCccCCHHHHHHHHHHHHHHhcCCcc
Confidence 47899999999984 258999987 479999999999999999998 34 57889999999999886542
Q ss_pred --------Hhhhhccc-----cceEEEEEECCCCEEEEEecCCCcceeEEEEec-----------------CcEEEEEcC
Q 010213 111 --------ENFVDMLD-----GMFSFVLLDTRDNSFIVARDAIGITSLYIGWGL-----------------DGSIWISSE 160 (515)
Q Consensus 111 --------~~~~~~l~-----G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~-----------------~~~~~faSe 160 (515)
.+.++.|. |.|++++.|. ++++++||+. .+||||.... ++.++||||
T Consensus 159 ~~~~~~al~~~~~~l~~~~~~~~~n~~~~dg--~~l~a~r~~~-~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~vvaSE 235 (257)
T cd01908 159 PAELLDAILQTLRELAALAPPGRLNLLLSDG--EYLIATRYAS-APSLYYLTRRAPFGCARLLFRSVTTPNDDGVVVASE 235 (257)
T ss_pred hHHHHHHHHHHHHHHHHhCcCeEEEEEEECC--CEEEEEEeCC-CCceEEEeccccccccccccccccCCCCCEEEEEeC
Confidence 23566777 7899999987 7899999998 8999998753 368999999
Q ss_pred cccccccCCcceEeCCCeEEEecC
Q 010213 161 LKGLNDDCEHFEAFPPGHLYSSKS 184 (515)
Q Consensus 161 ~~~l~~~~~~i~~l~pG~~~~~~~ 184 (515)
.-+... .++.|+||+++.++.
T Consensus 236 ~l~~~~---~w~~v~~ge~~~i~~ 256 (257)
T cd01908 236 PLTDDE---GWTEVPPGELVVVSE 256 (257)
T ss_pred CCCCCC---CceEeCCCEEEEEeC
Confidence 776654 789999999988764
No 47
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=99.67 E-value=1.4e-15 Score=153.82 Aligned_cols=135 Identities=21% Similarity=0.244 Sum_probs=109.5
Q ss_pred CEEEEEeeeeecCCC--CCCCceeeCCCcEEEEEeeEEcChHHHHHHhc--C-----------------CCccCCChHHH
Q 010213 43 DFYLAHQRLAIIDPA--SGDQPLYNEDKKIVVTVNGEIYNHEALRERLT--N-----------------HKFRTGSDCDV 101 (515)
Q Consensus 43 ~~~l~h~rl~~~~~~--~~~qP~~~~~~~~~~~~nGei~n~~~L~~~l~--~-----------------~~~~~~~D~e~ 101 (515)
.++++|+|++|.+.. ..+|||. +++|||||+|+..+++.+. . ....+.||||+
T Consensus 202 ~~al~H~RfSTNT~p~W~~AqPfr------~laHNGEInT~~gnr~~m~are~~~~s~~~g~~~~~~~pi~~~~~SDS~~ 275 (413)
T cd00713 202 AFALVHSRFSTNTFPSWPLAQPFR------YLAHNGEINTIRGNRNWMRAREGLLKSPLFGEDLKKLKPIINPGGSDSAS 275 (413)
T ss_pred EEEEEEEecCCCCCCCcccCCcce------eEEEcccccCHHHHHHHHHHhhhhhcCccchhhHHhcCCcCCCCCChHHH
Confidence 478999999999854 4789996 5999999999999988771 1 12235899999
Q ss_pred HHHHHHHH---H--------------------------------HhhhhccccceEEEEEECCCCEEEEEecCCCcceeE
Q 010213 102 IAHLYEEY---G--------------------------------ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLY 146 (515)
Q Consensus 102 i~~~~~~~---G--------------------------------~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLy 146 (515)
+.++++-. | ..+++.++|.|++++.|. +.++++||+.|.|||+
T Consensus 276 ld~~le~l~~~g~~l~~A~~mliPeaw~~~~~m~~~~r~fYey~~~~me~~dGp~aiv~~dg--~~i~a~rDrnGlRPl~ 353 (413)
T cd00713 276 LDNVLELLVRSGRSLPEAMMMLIPEAWQNNPTMDPELRAFYEYHSSLMEPWDGPAAIAFTDG--RQVGASLDRNGLRPAR 353 (413)
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCChhhccCccCCHHHHHHHHHHHHHhccCCCcEEEEEEeC--CEEEEEeCCCCCcceE
Confidence 88877532 2 135578999999999998 8999999999999999
Q ss_pred EEEecCcEEEEEcCcccccccCCcce---EeCCCeEEEecCC
Q 010213 147 IGWGLDGSIWISSELKGLNDDCEHFE---AFPPGHLYSSKSG 185 (515)
Q Consensus 147 y~~~~~~~~~faSe~~~l~~~~~~i~---~l~pG~~~~~~~~ 185 (515)
|+...++.++||||..++....+.|. +|.||+++.++..
T Consensus 354 ~~~t~d~~~v~ASE~gal~~~~~~V~~kg~l~PGe~v~id~~ 395 (413)
T cd00713 354 YVITKDGLLIMSSEVGVVDVPPEKVVEKGRLGPGEMLLVDLE 395 (413)
T ss_pred EEEECCCEEEEEeCCcccCCCcceeeecCCCCCCeEEEEECC
Confidence 99875667999999999966556675 8999999887643
No 48
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=99.47 E-value=5.1e-13 Score=119.92 Aligned_cols=126 Identities=17% Similarity=0.141 Sum_probs=85.2
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEe--ecCCCChHHHHHHHHHHhCCCceEEEeChhHHHHHHH
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV--GLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIE 304 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~--~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~ 304 (515)
.+.++||||+||+++++++.+... .++.++++ ++....+...++++|+. |+++..+.++..+..+...
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~~---------~~v~~v~~~~g~~~~~~~~~~~~~a~~-g~~~~~~~~~~~~~~~~~~ 72 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKYG---------LNPLAVTVDNGFNSEEAVKNIKNLIKK-GLDLDHLVINPEEMKDLQL 72 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHhC---------CceEEEEeCCCCCCHHHHHHHHHHHHh-CCCeEEEecCHHHHHHHHH
Confidence 478999999999999999987641 24555555 44333456889999999 8887777777655443322
Q ss_pred HHHH-hhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCccccCCCChHHH
Q 010213 305 EVIY-HVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEF 364 (515)
Q Consensus 305 ~~~~-~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~~~~~~~~~~ 364 (515)
.... ..+.+ ...........+.+.|++.|++++++|+++||+|+||+.+...+..+.+
T Consensus 73 ~~l~~~~~~p--~~~~~~~~~~~~~~~A~~~g~~~il~G~~~de~~~Gy~~~~~~~~~~~~ 131 (154)
T cd01996 73 ARFKAKVGDP--CWPCDTAIFTSLYKVALKFGIPLIITGENPAQEFGGIREEEGGIIDERR 131 (154)
T ss_pred HHHhcccCCC--ChhhhHHHHHHHHHHHHHhCcCEEEeCcCHHHhcccccccccchhHHHH
Confidence 2211 11222 1222233445677888899999999999999999999987665444443
No 49
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=99.45 E-value=3.6e-12 Score=115.48 Aligned_cols=131 Identities=31% Similarity=0.592 Sum_probs=110.6
Q ss_pred CcEEEEEeeEEcChHHHHHHhcCCCccCCChHHHHHHHHHHH---H----HhhhhccccceEEEEEECCCCEEEEEecCC
Q 010213 68 KKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEY---G----ENFVDMLDGMFSFVLLDTRDNSFIVARDAI 140 (515)
Q Consensus 68 ~~~~~~~nGei~n~~~L~~~l~~~~~~~~~D~e~i~~~~~~~---G----~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~ 140 (515)
..+.++|-|.|.|...|++++ |. -++.++.-++.++|+.. | .+.++.|+|.|+||+||..+++++++||.-
T Consensus 75 DdIfCiF~G~L~Nl~~L~qqY-GL-sK~~nEa~~vIEAYrtLRDRgPyPadqvv~~L~G~FaFVlyD~~~~tvf~A~d~~ 152 (228)
T PF12481_consen 75 DDIFCIFLGSLENLCSLRQQY-GL-SKGANEAMFVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDSKTGTVFVARDSD 152 (228)
T ss_pred CCEEEEEecchhhHHHHHHHh-Cc-CcCcchhhhHHHHHHHhhccCCCChHHHHHhccCceEEEEEecCCCcEEEeecCC
Confidence 458999999999999999997 22 25778888999999865 2 578999999999999999999999999999
Q ss_pred CcceeEEEEecCcEEEEEcCcccccccCC-cceEeCCCeEEEecCCceEEeeCCCCCcCCCC
Q 010213 141 GITSLYIGWGLDGSIWISSELKGLNDDCE-HFEAFPPGHLYSSKSGGLKRWYNPTWYSEAIP 201 (515)
Q Consensus 141 G~~pLyy~~~~~~~~~faSe~~~l~~~~~-~i~~l~pG~~~~~~~~~~~~~~~~~~~~~~~~ 201 (515)
|..||||+...||.++||+++..|...|. ..-..|+|+++... ++++.|-.|....+..|
T Consensus 153 G~vpLyWGi~~DGslv~Sdd~~~ik~~C~kS~ApFP~Gc~f~S~-~Gl~sfehP~nk~k~~p 213 (228)
T PF12481_consen 153 GSVPLYWGIAADGSLVFSDDLELIKEGCGKSFAPFPAGCFFSSE-GGLRSFEHPKNKVKAMP 213 (228)
T ss_pred CCcceEEEEeCCCCEEEcCCHHHHHhhhhhccCCCCcceEEEec-CceEeecCCcccccccc
Confidence 99999999988899999999999877764 45689999998876 56778877755444443
No 50
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=99.37 E-value=1.1e-11 Score=125.62 Aligned_cols=117 Identities=17% Similarity=0.148 Sum_probs=84.7
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEE--eecCCCChHHHHHHHHHHhCCCceEEEeChhHHHHHHH
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFC--VGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIE 304 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t--~~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~ 304 (515)
.+.|.||||+||+++++++++.. |.++.++| .++....+...++++++++|++|+.+.++.+.+.+...
T Consensus 61 D~iV~lSGGkDSs~la~ll~~~~---------gl~~l~vt~~~~~~~e~~~~n~~~~~~~lgvd~~~i~~d~~~~~~l~~ 131 (343)
T TIGR03573 61 DCIIGVSGGKDSTYQAHVLKKKL---------GLNPLLVTVDPGWNTELGVKNLNNLIKKLGFDLHTITINPETFRKLQR 131 (343)
T ss_pred CEEEECCCCHHHHHHHHHHHHHh---------CCceEEEEECCCCCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHH
Confidence 48899999999999998886544 22344444 44443335569999999999999999988777655555
Q ss_pred HHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 010213 305 EVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (515)
Q Consensus 305 ~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~ 354 (515)
..+.....|. ..........+.+.|++.|++++++|+++||+|+||..
T Consensus 132 ~~~~~~~~pc--~~c~~~~~~~l~~~A~~~gi~~Il~G~~~dE~fgGy~~ 179 (343)
T TIGR03573 132 AYFKKVGDPE--WPQDHAIFASVYQVALKFNIPLIIWGENIAEEYGGDSE 179 (343)
T ss_pred HHHhccCCCc--hhhhhHHHHHHHHHHHHhCCCEEEeCCCHHHhcCCccc
Confidence 4444332221 12223445677888999999999999999999999875
No 51
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=99.23 E-value=1.4e-10 Score=115.19 Aligned_cols=133 Identities=23% Similarity=0.242 Sum_probs=100.8
Q ss_pred CEEEEEeeeeecCCC--CCCCceeeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHH---H------
Q 010213 43 DFYLAHQRLAIIDPA--SGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEE---Y------ 109 (515)
Q Consensus 43 ~~~l~h~rl~~~~~~--~~~qP~~~~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~---~------ 109 (515)
.++++|+|.+|.+.. ..+|||. .++|||||.++.-.++.+ .++.+++.+|+|++..++-- -
T Consensus 203 ~~~l~HsRFSTNT~p~W~~AHPfr------~lvHNGEInT~~gN~nwm~ar~~~~~s~~~~e~~a~l~p~~~~~~sDs~~ 276 (371)
T COG0067 203 AIALVHTRFSTNTFPSWPLAHPFR------LLVHNGEINTYGGNRNWLEARGYKFESPTDGEVLAKLLPILMRGGSDSAS 276 (371)
T ss_pred eEEEEEeccCCCCCCCCCccCcce------eeeecceecccccHHHHHHHhhcccccCccHHHHHHHHHHhcccCCcchh
Confidence 378899999998754 4789996 469999999999998888 68899999999998887731 1
Q ss_pred -----------HH--hhhhccccceEEEEEE-CCCCEEEEEecCCCcceeEEEEecCcEEEEEcCcccccccCCcceEeC
Q 010213 110 -----------GE--NFVDMLDGMFSFVLLD-TRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFP 175 (515)
Q Consensus 110 -----------G~--~~~~~l~G~fa~v~~d-~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~ 175 (515)
|. .-...+.|.||++.-. -......+.+|+.+.+|.+-+.. +..+.++|+..+++.. .-|.
T Consensus 277 ~dn~lE~l~~~G~~l~~a~~m~~P~aw~~~~~~~~~~~afye~~~~l~epwdGpa-~~~f~dgse~gA~ldr----ngLr 351 (371)
T COG0067 277 LDNALELLLLGGRDLYHAAMLLGPEAWVVGTDMDPEGRAFYEDHSALMEPWDGPA-DIVFTDGSEEGAILDR----NGLR 351 (371)
T ss_pred hhHHHHHHHhcCcCchhHHHhcCchhhccCCCCCcceEEEEehhhhCCCCccCCc-ceeEEeeeeeeeeecc----CCCC
Confidence 11 2334678899988754 11256788899999999987763 6678889998888753 3477
Q ss_pred CCeEEEecCCc
Q 010213 176 PGHLYSSKSGG 186 (515)
Q Consensus 176 pG~~~~~~~~~ 186 (515)
|+.++..+++.
T Consensus 352 p~Ry~~t~d~~ 362 (371)
T COG0067 352 PARYWITKDGE 362 (371)
T ss_pred cceEEEecCCE
Confidence 77777665554
No 52
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=99.15 E-value=3.6e-10 Score=105.09 Aligned_cols=116 Identities=21% Similarity=0.275 Sum_probs=83.6
Q ss_pred hccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCC--hHHHHHHHHHHhCCCceEEEeChhHH
Q 010213 222 LMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSP--DLKYAKEVADYLGTVHHEFHFTVQDG 299 (515)
Q Consensus 222 l~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~--d~~~A~~va~~lg~~~~~~~~~~~~~ 299 (515)
+.+..++.|++|||.|||+++.+|.+.+ |.++.++|+..+-.+ +.+.|+..|+.+|+.|..+.++.-+
T Consensus 14 ik~~~kv~vAfSGGvDSslLa~la~~~l---------G~~v~AvTv~sP~~p~~e~e~A~~~A~~iGi~H~~i~~~~~~- 83 (269)
T COG1606 14 IKEKKKVVVAFSGGVDSSLLAKLAKEAL---------GDNVVAVTVDSPYIPRREIEEAKNIAKEIGIRHEFIKMNRMD- 83 (269)
T ss_pred HhhcCeEEEEecCCccHHHHHHHHHHHh---------ccceEEEEEecCCCChhhhhHHHHHHHHhCCcceeeehhhcc-
Confidence 3344579999999999999999998877 468999999876543 6789999999999999998865322
Q ss_pred HHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCc
Q 010213 300 IDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (515)
Q Consensus 300 ~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~ 353 (515)
++..+ .+.+.+.++-....-.+.+.|.+.|.+++++|..+|+++++-|
T Consensus 84 ----~~~~~--n~~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtNasDl~~~RP 131 (269)
T COG1606 84 ----PEFKE--NPENRCYLCKRAVYSTLVEEAEKRGYDVVADGTNASDLFDYRP 131 (269)
T ss_pred ----hhhcc--CCCCcchHHHHHHHHHHHHHHHHcCCCEEEeCCcHHHhcCCCc
Confidence 22221 1122111111122234567788899999999999999998444
No 53
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=99.11 E-value=7.9e-10 Score=107.32 Aligned_cols=118 Identities=19% Similarity=0.224 Sum_probs=82.2
Q ss_pred HHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCC--ChHHHHHHHHHHhCCCceEEEeC
Q 010213 218 VIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEVADYLGTVHHEFHFT 295 (515)
Q Consensus 218 V~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~--~d~~~A~~va~~lg~~~~~~~~~ 295 (515)
++..+.+..++.+++|||+||+++++++.+.. .++.++++..+.. .|...|+++|+++|++|+++.++
T Consensus 5 l~~~l~~~~~vlVa~SGGvDSs~ll~la~~~g----------~~v~av~~~~~~~~~~e~~~a~~~a~~lgi~~~ii~~~ 74 (252)
T TIGR00268 5 LRNFLKEFKKVLIAYSGGVDSSLLAAVCSDAG----------TEVLAITVVSPSISPRELEDAIIIAKEIGVNHEFVKID 74 (252)
T ss_pred HHHHHHhcCCEEEEecCcHHHHHHHHHHHHhC----------CCEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcH
Confidence 33445556789999999999999999998752 4688888865433 46789999999999999988764
Q ss_pred hhHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCC
Q 010213 296 VQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGY 352 (515)
Q Consensus 296 ~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy 352 (515)
+ +.+.+ . ...+..+.......+..+.+.|++.|+++++||+++|+++.++
T Consensus 75 ~--~~~~~---~--~n~~~~c~~ck~~~~~~l~~~A~~~g~~~I~~G~n~dD~~~~r 124 (252)
T TIGR00268 75 K--MINPF---R--ANVEERCYFCKKMVLSILVKEAEKRGYDVVVDGTNADDLFDHR 124 (252)
T ss_pred H--HHHHH---H--hCCCcccchhhHHHHHHHHHHHHHcCCCEEEECCCCccccccc
Confidence 2 21111 1 1122211111222233566778899999999999999987643
No 54
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=99.10 E-value=6.1e-10 Score=126.69 Aligned_cols=133 Identities=23% Similarity=0.223 Sum_probs=99.1
Q ss_pred CEEEEEeeeeecCCC--CCCCceeeCCCcEEEEEeeEEcChHHHHHHh--cC----------------CCccCCChHHHH
Q 010213 43 DFYLAHQRLAIIDPA--SGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TN----------------HKFRTGSDCDVI 102 (515)
Q Consensus 43 ~~~l~h~rl~~~~~~--~~~qP~~~~~~~~~~~~nGei~n~~~L~~~l--~~----------------~~~~~~~D~e~i 102 (515)
.+++.|+|.+|.+.. ..+|||. .++|||||.-..-.++.+ .+ ..-...||++.+
T Consensus 213 ~~al~HsRFSTNT~PsW~~AqPFR------~laHNGEINTi~gN~nwm~are~~l~s~~~~~~~~~~Pii~~~~SDSa~l 286 (1485)
T PRK11750 213 AICVFHQRFSTNTLPRWPLAQPFR------YLAHNGEINTITGNRQWARARAYKFQTPLIPDLQEAAPFVNETGSDSSSL 286 (1485)
T ss_pred EEEEEECcCCCCCCCCCCcCCCce------eeeeccccccHHHHHHHHHHHHHhccCCCcchHHhhCCcCCCCCChHHHH
Confidence 478999999999865 4689995 589999998655544443 11 111346899886
Q ss_pred HHHHH---HHH--------------------------------HhhhhccccceEEEEEECCCCEEEEEecCCCcceeEE
Q 010213 103 AHLYE---EYG--------------------------------ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYI 147 (515)
Q Consensus 103 ~~~~~---~~G--------------------------------~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy 147 (515)
-..++ ..| ...++.++|.|++++.|. +.++++|||.|.|||.|
T Consensus 287 Dn~lElL~~~G~sl~~A~~mliPeaW~~~~~m~~~~r~fYeY~s~lmEpwdGpaaiv~~~g--~~i~A~~DrnGlRPlr~ 364 (1485)
T PRK11750 287 DNMLELLLAGGMDLFRAMRLLVPPAWQNNPDMDPDLRAFYEFNSMHMEPWDGPAGIVMTDG--RYAACNLDRNGLRPARY 364 (1485)
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCcccccCCCCCHHHHHHHHHHHhhcccCCCCEEEEEEeC--CEEEEecCCCCCccceE
Confidence 55443 333 124566799999999997 89999999999999977
Q ss_pred EEecCcEEEEEcCcccccccCCc-ce--EeCCCeEEEec
Q 010213 148 GWGLDGSIWISSELKGLNDDCEH-FE--AFPPGHLYSSK 183 (515)
Q Consensus 148 ~~~~~~~~~faSe~~~l~~~~~~-i~--~l~pG~~~~~~ 183 (515)
+...++.+++|||..++.-.... ++ +|.||+++.++
T Consensus 365 ~~~~d~~~i~aSE~g~ldi~~~~vvrkg~l~PGemi~id 403 (1485)
T PRK11750 365 VITKDKLITLASEVGIWDYQPDEVVEKGRVGPGELLVID 403 (1485)
T ss_pred EEEcCCEEEEEecceeeecccceeEEecccCCCeEEEEe
Confidence 77667779999999988754444 44 79999998765
No 55
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D.
Probab=99.10 E-value=6.2e-10 Score=108.70 Aligned_cols=175 Identities=21% Similarity=0.300 Sum_probs=74.8
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcc------cCCCCCCceEEEC-----------------------------CEE
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLK------HRGPDWSGLYQHG-----------------------------DFY 45 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~------~RGpd~~g~~~~~-----------------------------~~~ 45 (515)
||=++|+-....... . -.+..+. .+=||+.|+.... .++
T Consensus 1 MC~Llg~s~~~p~~~--~----~sl~~~~~~~~~~~~h~DGwGiawy~~~~~~~~k~~~pa~~~~~~~~l~~~~i~S~~~ 74 (271)
T PF13230_consen 1 MCRLLGMSSNRPTDI--N----FSLTSFAARGGKTPPHPDGWGIAWYDGGGPRVFKSPRPAWNSPNLRLLADYKIRSRLF 74 (271)
T ss_dssp -----------------------------------------EEEEEESSSS-EEEEESS-CCC-HHHHHHHH-H-EEEEE
T ss_pred Ccccccccccccccc--c----cccccccccccCcCCCCCeeEEEEEeCCeEEEEECCCCCcCCchHHHHhhCCccCCEE
Confidence 999999976432211 1 1122222 2238888886544 368
Q ss_pred EEEeeeeecCC--CCCCCceeeC--CCcEEEEEeeEEcChHHHHHHhcCCCccCCChHHHHHHHHHHH----H-------
Q 010213 46 LAHQRLAIIDP--ASGDQPLYNE--DKKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEY----G------- 110 (515)
Q Consensus 46 l~h~rl~~~~~--~~~~qP~~~~--~~~~~~~~nGei~n~~~L~~~l~~~~~~~~~D~e~i~~~~~~~----G------- 110 (515)
++|.|.|+.|. ..++|||..+ .++++++|||.|.+++.++... +...+.||+|.++.++... +
T Consensus 75 laHvR~AT~G~v~~~N~HPF~~~~~g~~w~FaHNG~i~~f~~~~~~~--~~~~G~TDSE~~F~lll~~l~~~~~~~~~~~ 152 (271)
T PF13230_consen 75 LAHVRAATQGAVSLENCHPFSRELWGRRWLFAHNGTIPGFEDILDDR--YQPVGTTDSEHAFCLLLDQLRDRGPDAPPAL 152 (271)
T ss_dssp EEEE------------SS-EE----ETTEEEEEEEEETTGGGGHHHH--HT--S--HHHHHHHHHHHTTTTT-HH--HHH
T ss_pred EEEecccCCCCCCcccCCCceeccCCCcEEEEeCCccccccccCccc--cccCCCcHHHHHHHHHHHHHHHhCCcccccH
Confidence 99999999884 2589999854 3679999999999987766332 2246789999999987542 1
Q ss_pred -------Hhhhhccc--cceEEEEEECCCCEEEEEecC----CCcceeE-------------E---EEecCcEEEEEcCc
Q 010213 111 -------ENFVDMLD--GMFSFVLLDTRDNSFIVARDA----IGITSLY-------------I---GWGLDGSIWISSEL 161 (515)
Q Consensus 111 -------~~~~~~l~--G~fa~v~~d~~~~~l~~~rD~----~G~~pLy-------------y---~~~~~~~~~faSe~ 161 (515)
.+..+.+. |.+.|++.|. +.+++.|+. .-+++.+ . ....+..++||||
T Consensus 153 ~~~~~~l~~~~~~~~~~~~~N~~lsDG--~~l~a~~~~~l~~~~r~~p~~~~~l~~~~~~~~~~~~~~~~~~~~vVaSe- 229 (271)
T PF13230_consen 153 EELFEALRELAKEINEYGSLNFLLSDG--ERLFAHRYTSLYYLTRRPPFGKARLFDEDYEVDFSEVTDPDDRAVVVASE- 229 (271)
T ss_dssp HHHHHHHHHHHHS-SSSEEEEEEEE-S--S-EEEEEEESSS----------------------EEEEETTTTEEEEESS-
T ss_pred HHHHHHHHHHHHHhccCeeEEEEEECC--ceEEEEEcCCeeEEeccccccccccccchhhhhhhhccCCCCCEEEEEec-
Confidence 12233333 7899999998 799999982 1122211 0 0112456788888
Q ss_pred ccccccCCcceEeCCCeEEEecCCceE
Q 010213 162 KGLNDDCEHFEAFPPGHLYSSKSGGLK 188 (515)
Q Consensus 162 ~~l~~~~~~i~~l~pG~~~~~~~~~~~ 188 (515)
+|-. -+.+..||+|+++.+..|++.
T Consensus 230 -PLt~-~e~W~~vp~g~~l~~~~G~v~ 254 (271)
T PF13230_consen 230 -PLTD-DEDWEPVPPGSLLVFRDGEVV 254 (271)
T ss_dssp ------SS--EE--SSEEEE-------
T ss_pred -cCCC-CCCeEEcCCCcEEEEeccccc
Confidence 4443 246999999999999888753
No 56
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=99.02 E-value=3.1e-09 Score=103.01 Aligned_cols=133 Identities=23% Similarity=0.275 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHHHHHHh
Q 010213 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYL 285 (515)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~va~~l 285 (515)
+.+...|++.|+.. ....+.+.||||+||+++++++.+.... .++.++++.... ..|...|+++|+++
T Consensus 8 ~~l~~~l~~~~~~~--~~~~vvv~lSGGiDSs~~a~la~~~~~~--------~~v~~~~~~~~~~~~~~~~~a~~~a~~l 77 (248)
T cd00553 8 NALVLFLRDYLRKS--GFKGVVLGLSGGIDSALVAALAVRALGR--------ENVLALFMPSRYSSEETREDAKELAEAL 77 (248)
T ss_pred HHHHHHHHHHHHHh--CCCCEEEeCCCcHHHHHHHHHHHHHhCc--------ccEEEEECCCCCCCHHHHHHHHHHHHHh
Confidence 33444444444443 2356899999999999999999987621 468888887654 35889999999999
Q ss_pred CCCceEEEeChhHHHHHHHHHHHhh--ccCCC---CcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCc
Q 010213 286 GTVHHEFHFTVQDGIDAIEEVIYHV--ETYDV---TTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (515)
Q Consensus 286 g~~~~~~~~~~~~~~~~l~~~~~~~--e~~~~---~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~ 353 (515)
|++|+++.+++ ..+.+...+... +.+.. ..+...+.+..++..|.+.|..|+-||+ .+|++.||.
T Consensus 78 gi~~~~i~i~~--~~~~~~~~~~~~~~~~~~~~~~~n~~ar~R~~~Ly~~A~~~~~~vlgTgn-~~E~~~G~~ 147 (248)
T cd00553 78 GIEHVNIDIDP--AVEAFLALLGESGGSELEDLALGNIQARLRMVILYALANKLGGLVLGTGN-KSELLLGYF 147 (248)
T ss_pred CCeEEEeccHH--HHHHHHHHHhhhcccchhhHHHHhhHHHHHHHHHHHHHHhcCCEEEcCCc-HhHHHhCCe
Confidence 99999877643 233222222110 11111 1111223344567778888998999987 667787874
No 57
>PRK14561 hypothetical protein; Provisional
Probab=99.02 E-value=2.4e-09 Score=99.49 Aligned_cols=106 Identities=23% Similarity=0.273 Sum_probs=74.0
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHHHhCCCceEEEeChhHHHHHHHHH
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEV 306 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~~~ 306 (515)
+|+++||||+||+++++++.+.. ...+.+++.++ .+|.++|+++|+.+|++|+.+.++.+. .+...+.
T Consensus 2 kV~ValSGG~DSslll~~l~~~~---------~v~a~t~~~g~--~~e~~~a~~~a~~lGi~~~~v~~~~~~-~~~~~~~ 69 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERFY---------DVELVTVNFGV--LDSWKHAREAAKALGFPHRVLELDREI-LEKAVDM 69 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhcC---------CeEEEEEecCc--hhHHHHHHHHHHHhCCCEEEEECCHHH-HHHHHHH
Confidence 48999999999999999886541 12334455544 468999999999999999999987654 5555555
Q ss_pred HHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCcccc
Q 010213 307 IYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 307 ~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDel 348 (515)
.+..+.|... ...+..+++.. ++ .|++++.+|+..|.+
T Consensus 70 ~~~~~~P~~~--~~~l~~~~l~~-~a-~g~~~Ia~G~n~DD~ 107 (194)
T PRK14561 70 IIEDGYPNNA--IQYVHEHALEA-LA-EEYDVIADGTRRDDR 107 (194)
T ss_pred HHHcCCCCch--hHHHHHHHHHH-HH-cCCCEEEEEecCCCc
Confidence 6555544321 12233334444 33 889999999999984
No 58
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=98.97 E-value=1.9e-09 Score=104.59 Aligned_cols=135 Identities=20% Similarity=0.194 Sum_probs=89.0
Q ss_pred cHHHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC---CCChHHHHHHHH
Q 010213 206 DPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE---GSPDLKYAKEVA 282 (515)
Q Consensus 206 ~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~---~~~d~~~A~~va 282 (515)
..+++.+.|.++|+.+..+ .|.+.||||+||+++++++.+... ..+.++.+... ...|...|+++|
T Consensus 5 ~~~~l~~~l~~~v~~~~~~--~V~vglSGGiDSsvla~l~~~~~~---------~~~~~~~~~~~~~~~~~e~~~a~~~a 73 (250)
T TIGR00552 5 YVEEIEDFLRGYVQKSGAK--GVVLGLSGGIDSAVVAALCVEALG---------EQNHALLLPHSVQTPEQDVQDALALA 73 (250)
T ss_pred HHHHHHHHHHHHHHHhCCC--CEEEECCCcHHHHHHHHHHHHhhC---------CceEEEEECCccCCCHHHHHHHHHHH
Confidence 4578999999999988544 466679999999999999987651 24445544322 224889999999
Q ss_pred HHhCCCceEEEeChhHHHHHHHHHHHhh-ccCC---CCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 010213 283 DYLGTVHHEFHFTVQDGIDAIEEVIYHV-ETYD---VTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (515)
Q Consensus 283 ~~lg~~~~~~~~~~~~~~~~l~~~~~~~-e~~~---~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~ 354 (515)
+.+|++++++.+++.. ..+....... +... ...++..+.+..+...|.+.|+.++.||+.. |.+.||..
T Consensus 74 ~~lgi~~~~i~i~~~~--~~~~~~~~~~~~~~~~~~~~n~car~R~~~L~~~A~~~g~~~laTgh~~-E~~~G~~t 146 (250)
T TIGR00552 74 EPLGINYKNIDIAPIA--ASFQAQTETGDELSDFLAKGNLKARLRMAALYAIANKHNLLVLGTGNKS-ELMLGYFT 146 (250)
T ss_pred HHhCCeEEEEcchHHH--HHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCcHH-HHhhCCee
Confidence 9999999988765432 2111100000 0000 0111222445677788889999999999997 45667743
No 59
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=98.94 E-value=4.2e-09 Score=98.93 Aligned_cols=110 Identities=20% Similarity=0.234 Sum_probs=75.8
Q ss_pred eEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHHHHHHhCCCceEEEeChhHHHHHHHH
Q 010213 228 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEE 305 (515)
Q Consensus 228 v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~~ 305 (515)
|.+++|||+||++++.++.+.. +.++.++++.... ..|...++++|+++|++|+.+.++... ...+
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~---------~~~v~~v~vd~g~~~~~~~~~~~~~a~~lgi~~~~~~~~~~~-~~~~-- 68 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDAL---------GDRVLAVTATSPLFPRRELEEAKRLAKEIGIRHEVIETDELD-DPEF-- 68 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHh---------CCcEEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCccc-cHHH--
Confidence 4689999999999999998764 1367888875443 357889999999999999998876311 1111
Q ss_pred HHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCC
Q 010213 306 VIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGY 352 (515)
Q Consensus 306 ~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy 352 (515)
. ..............+-.+.+.+++.|+.+++||+.+|+.+.++
T Consensus 69 --~-~~~~~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~dD~~e~~ 112 (202)
T cd01990 69 --A-KNPPDRCYLCKKALYEALKEIAEELGLDVVLDGTNADDLGDYR 112 (202)
T ss_pred --h-cCCCCccchhHHHHHHHHHHHHHHCCCCEEEEcCccccCcccC
Confidence 1 0111111111122233556778889999999999999998764
No 60
>PRK13980 NAD synthetase; Provisional
Probab=98.93 E-value=6.5e-09 Score=101.68 Aligned_cols=133 Identities=24% Similarity=0.257 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHHHHHHh
Q 010213 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYL 285 (515)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~va~~l 285 (515)
+++...+.+.|+.. ....+.+.||||+||+++++++.+.... .++.++++.... ..|...|+++|+++
T Consensus 15 ~~l~~~l~~~v~~~--g~~~vvv~lSGGiDSsv~a~l~~~~~~~--------~~v~av~~~~~~~~~~~~~~a~~la~~l 84 (265)
T PRK13980 15 EIIVDFIREEVEKA--GAKGVVLGLSGGIDSAVVAYLAVKALGK--------ENVLALLMPSSVSPPEDLEDAELVAEDL 84 (265)
T ss_pred HHHHHHHHHHHHHc--CCCcEEEECCCCHHHHHHHHHHHHHhCc--------cceEEEEeeCCCCCHHHHHHHHHHHHHh
Confidence 34444555555443 2256889999999999999999886521 468888887553 35788999999999
Q ss_pred CCCceEEEeChhHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCc
Q 010213 286 GTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (515)
Q Consensus 286 g~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~ 353 (515)
|++|+++.+++ ..+.+.......+......+.....+..++..|.+.|..|+-||...+ ++.||.
T Consensus 85 gi~~~~i~i~~--~~~~~~~~~~~~~~~~~~n~~aR~R~~~L~~~A~~~g~lvlgTgn~sE-~~~G~~ 149 (265)
T PRK13980 85 GIEYKVIEITP--IVDAFFSAIPDADRLRVGNIMARTRMVLLYDYANRENRLVLGTGNKSE-LLLGYF 149 (265)
T ss_pred CCCeEEEECHH--HHHHHHHHcccccchHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCHhH-HHhCCc
Confidence 99999887653 233332221100001111122233445677778889999999997765 455664
No 61
>PRK00876 nadE NAD synthetase; Reviewed
Probab=98.91 E-value=1.4e-08 Score=101.12 Aligned_cols=83 Identities=25% Similarity=0.279 Sum_probs=66.1
Q ss_pred CcHHHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC--CCChHHHHHHHH
Q 010213 205 YDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVA 282 (515)
Q Consensus 205 ~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~--~~~d~~~A~~va 282 (515)
+..+.+.+.|+++|+.++.++ ++++.||||+||+++++++.+.... .++.++.+... ..+|...|+.+|
T Consensus 14 ~~~e~i~~~l~~~V~~~~~~~-~VvVgLSGGIDSSvvaaLa~~a~g~--------~~v~av~~~~~~s~~~e~~~A~~lA 84 (326)
T PRK00876 14 AEAERIRAAIREQVRGTLRRR-GVVLGLSGGIDSSVTAALCVRALGK--------ERVYGLLMPERDSSPESLRLGREVA 84 (326)
T ss_pred HHHHHHHHHHHHHHHHHcCCC-CEEEEccCCHHHHHHHHHHHHhhCC--------CcEEEEEecCCCCChHHHHHHHHHH
Confidence 356789999999999988776 7999999999999999999876521 23444444322 336889999999
Q ss_pred HHhCCCceEEEeCh
Q 010213 283 DYLGTVHHEFHFTV 296 (515)
Q Consensus 283 ~~lg~~~~~~~~~~ 296 (515)
+++|++|+.+.+++
T Consensus 85 ~~LGi~~~~i~i~~ 98 (326)
T PRK00876 85 EHLGVEYVVEDITP 98 (326)
T ss_pred HHcCCCEEEEECch
Confidence 99999999998875
No 62
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=98.87 E-value=1.5e-08 Score=102.79 Aligned_cols=113 Identities=20% Similarity=0.160 Sum_probs=80.2
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC------------CChHHHHHHHHHHhCCCceEEEe
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG------------SPDLKYAKEVADYLGTVHHEFHF 294 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~------------~~d~~~A~~va~~lg~~~~~~~~ 294 (515)
+|++++|||+||+++++++.+.. .++.++++.... ..|...|+++|+++|++|+.+.+
T Consensus 2 kVlValSGGvDSsvla~lL~~~G----------~~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~~a~~LgIp~~vvd~ 71 (346)
T PRK00143 2 RVVVGMSGGVDSSVAAALLKEQG----------YEVIGVFMKLWDDDDETGKGGCCAEEDIADARRVADKLGIPHYVVDF 71 (346)
T ss_pred eEEEEecCCHHHHHHHHHHHHcC----------CcEEEEEEeCCCcccccccCCcCcHHHHHHHHHHHHHcCCcEEEEeC
Confidence 58999999999999999998742 568888876521 24678999999999999999988
Q ss_pred ChhHHHHHHHHHHH---hhccCCCCcccchHH-HHHHHHHHHhCCCeEEEeccCccccc
Q 010213 295 TVQDGIDAIEEVIY---HVETYDVTTIRASTP-MFLMSRKIKSLGVKMVISGEGSDEIF 349 (515)
Q Consensus 295 ~~~~~~~~l~~~~~---~~e~~~~~~~~~~~~-~~~l~~~a~~~g~~vlltG~GgDelf 349 (515)
..+...+.++.++. ...+|+++..++... ...+.+.|.+.|++.+.||+.+|...
T Consensus 72 ~~~f~~~vi~~~~~~~~~g~tpnpc~~C~r~ik~~~l~~~A~~~g~~~IATGH~a~d~~ 130 (346)
T PRK00143 72 EKEFWDRVIDYFLDEYKAGRTPNPCVLCNKEIKFKAFLEYARELGADYIATGHYARIRD 130 (346)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcChhhhHHHHHHHHHHHHHHCCCCEEEeeeeccccc
Confidence 65433333322222 123444444333322 34567888899999999999998754
No 63
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=1.5e-08 Score=100.31 Aligned_cols=112 Identities=21% Similarity=0.144 Sum_probs=80.4
Q ss_pred ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC---------CChHHHHHHHHHHhCCCceEEEeC
Q 010213 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG---------SPDLKYAKEVADYLGTVHHEFHFT 295 (515)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~---------~~d~~~A~~va~~lg~~~~~~~~~ 295 (515)
..+|.|.+|||+|||+.|+++++.. ..+..+++..-. ..|...|++||+.+|++|+.+++.
T Consensus 3 ~~kV~v~mSGGVDSSVaA~lLk~QG----------yeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vdf~ 72 (356)
T COG0482 3 KKKVLVGMSGGVDSSVAAYLLKEQG----------YEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVDFE 72 (356)
T ss_pred CcEEEEEccCCHHHHHHHHHHHHcC----------CeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEEEchH
Confidence 3568999999999999999999864 678777763211 147789999999999999999886
Q ss_pred hhHHH---HHHHHHHHhhccCCCCcccchHHHH-HHHHHHHhCCCeEEEeccCcc
Q 010213 296 VQDGI---DAIEEVIYHVETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSD 346 (515)
Q Consensus 296 ~~~~~---~~l~~~~~~~e~~~~~~~~~~~~~~-~l~~~a~~~g~~vlltG~GgD 346 (515)
.+..- +.+.+-.....+|+++..+|....+ .+.+.|.+.|++.+.||+.+-
T Consensus 73 ~~y~~~V~~~f~~~Y~~G~TPNPci~CN~~iKF~~~l~~a~~lgad~iATGHYar 127 (356)
T COG0482 73 KEFWNKVFEYFLAEYKAGKTPNPCILCNKEIKFKALLDYAKELGADYIATGHYAR 127 (356)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcchhcCHHHHHHHHHHHHHHcCCCeEEEeeeEe
Confidence 54321 2222222234577766656554444 456778889999999998764
No 64
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=98.85 E-value=2.2e-08 Score=101.71 Aligned_cols=113 Identities=22% Similarity=0.181 Sum_probs=78.3
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC----------CCChHHHHHHHHHHhCCCceEEEeCh
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE----------GSPDLKYAKEVADYLGTVHHEFHFTV 296 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~----------~~~d~~~A~~va~~lg~~~~~~~~~~ 296 (515)
+|++++|||+||+++++++.+.. .++.++++... ...|...|+++|+.+|++|+.+.++.
T Consensus 1 kVlValSGGvDSsvla~lL~~~g----------~~v~~v~i~~~~~~~~~~~~~s~~d~~~a~~va~~lgI~~~vvd~~~ 70 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKEQG----------YEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQLGIPHYVVNFEK 70 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHHcC----------CcEEEEEEecccccccccCCCCHHHHHHHHHHHHHhCCcEEEEECcH
Confidence 47899999999999999998753 46777766321 12578899999999999999998876
Q ss_pred hHHHHHHHHHHH---hhccCCCCcccchHH-HHHHHHHHHhCCCeEEEeccCccccc
Q 010213 297 QDGIDAIEEVIY---HVETYDVTTIRASTP-MFLMSRKIKSLGVKMVISGEGSDEIF 349 (515)
Q Consensus 297 ~~~~~~l~~~~~---~~e~~~~~~~~~~~~-~~~l~~~a~~~g~~vlltG~GgDelf 349 (515)
+...+.+...+. ...+|+++..++... ...+.+.|.+.|++.+.||+.+|...
T Consensus 71 ~f~~~v~~~~i~~~~~g~tpnpc~~C~r~ikf~~l~~~A~~~g~~~IatGHya~d~~ 127 (349)
T cd01998 71 EYWEKVFEPFLEEYKKGRTPNPDILCNKEIKFGALLDYAKKLGADYIATGHYARIEE 127 (349)
T ss_pred HHHHHHHHHHHHHHHcCCCCCchHhhhhHHHHHHHHHHHHHcCcCEEEECCcCCeee
Confidence 443333322222 122344433333322 23556778899999999999998765
No 65
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=98.84 E-value=2.1e-08 Score=92.74 Aligned_cols=116 Identities=20% Similarity=0.217 Sum_probs=75.5
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC--C--CChHHHHHHHHHHhCCCceEEEeChhHHHHH
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--G--SPDLKYAKEVADYLGTVHHEFHFTVQDGIDA 302 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~--~--~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~ 302 (515)
+|.+.+|||.||++++.++.+...... .+.++.++++... . ..+..+++++|+.+|++++.+.++... ..
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~ 74 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYP----YGFELEALTVDEGIPGYRDESLEVVERLAEELGIELEIVSFKEEY--TD 74 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcC----CCeEEEEEEEECCCCCCcHHHHHHHHHHHHHcCCceEEEehhhhc--ch
Confidence 478999999999999999987643110 0136777777543 2 246789999999999999988775321 00
Q ss_pred HHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccc
Q 010213 303 IEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIF 349 (515)
Q Consensus 303 l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf 349 (515)
... ....................+.+.+++.|+.++++|+.+|++.
T Consensus 75 ~~~-~~~~~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~dD~~ 120 (185)
T cd01993 75 DIE-VKKRGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNLDDEA 120 (185)
T ss_pred hhh-hhccCCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCChHHHH
Confidence 000 0000111111112234455677888999999999999999864
No 66
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=98.82 E-value=7.1e-09 Score=104.23 Aligned_cols=114 Identities=18% Similarity=0.120 Sum_probs=70.2
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCC-----------ChHHHHHHHHHHhCCCceEEEeC
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS-----------PDLKYAKEVADYLGTVHHEFHFT 295 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~-----------~d~~~A~~va~~lg~~~~~~~~~ 295 (515)
+|.|.+|||+|||+.|+++++.+ .++..+++..-+. .|...|+++|++||++|+.+++.
T Consensus 2 kV~vamSGGVDSsvaA~LLk~~G----------~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgIp~~v~d~~ 71 (356)
T PF03054_consen 2 KVLVAMSGGVDSSVAAALLKEQG----------YDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGIPHYVVDLR 71 (356)
T ss_dssp EEEEE--SSHHHHHHHHHHHHCT-----------EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT--EEEEETH
T ss_pred eEEEEccCCHHHHHHHHHHHhhc----------ccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCCCEEEEChH
Confidence 58899999999999999999864 7888888765432 25788999999999999999986
Q ss_pred hhHH---HHHHHHHHHhhccCCCCcccchHHH-HHHHHHHHh-CCCeEEEeccCcccccc
Q 010213 296 VQDG---IDAIEEVIYHVETYDVTTIRASTPM-FLMSRKIKS-LGVKMVISGEGSDEIFG 350 (515)
Q Consensus 296 ~~~~---~~~l~~~~~~~e~~~~~~~~~~~~~-~~l~~~a~~-~g~~vlltG~GgDelf~ 350 (515)
.+-. ++.+-+......+|+++..+|..-. -.+.+.|.+ .|++.+-||+.|--...
T Consensus 72 ~~f~~~Vi~~f~~~Y~~G~TPNPcv~CN~~IKF~~l~~~a~~~~g~d~iATGHYAri~~~ 131 (356)
T PF03054_consen 72 EEFWEEVIEPFLDEYRKGRTPNPCVLCNRFIKFGALLEYADEGLGADYIATGHYARIEKD 131 (356)
T ss_dssp HHHHHHTHHHHHHHHHTT----HHHHHHHHTTTTHHHHHHHTTTT-SEEE---SEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCChHHhhchhhhHHHHHHHHHhhcCCCeeccceeEEEEee
Confidence 5432 2222222233456765544443222 256778888 89999999999876554
No 67
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.80 E-value=2.1e-08 Score=101.56 Aligned_cols=113 Identities=18% Similarity=0.110 Sum_probs=76.7
Q ss_pred ccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC---C-ChHHHHHHHHHHhCCCceEEEeChhH
Q 010213 223 MTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG---S-PDLKYAKEVADYLGTVHHEFHFTVQD 298 (515)
Q Consensus 223 ~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~---~-~d~~~A~~va~~lg~~~~~~~~~~~~ 298 (515)
..+.+|.+++|||+||+++++++++.. .++.++++.... + .|...|+++|+++|++|+.+.++..
T Consensus 3 ~~~~kVlValSGGVDSsvaa~LL~~~G----------~~V~~v~~~~~~~~~~~~d~~~a~~va~~LgIp~~vvd~~~~- 71 (360)
T PRK14665 3 EKNKRVLLGMSGGTDSSVAAMLLLEAG----------YEVTGVTFRFYEFNGSTEYLEDARALAERLGIGHITYDARKV- 71 (360)
T ss_pred CCCCEEEEEEcCCHHHHHHHHHHHHcC----------CeEEEEEEecCCCCCChHHHHHHHHHHHHhCCCEEEEecHHH-
Confidence 456789999999999999999998753 578888875432 2 3578899999999999998876532
Q ss_pred HHHHH----HHHHHhhccCCCCcccchHHH-HHHHHHHHhCCCeEEEeccCcc
Q 010213 299 GIDAI----EEVIYHVETYDVTTIRASTPM-FLMSRKIKSLGVKMVISGEGSD 346 (515)
Q Consensus 299 ~~~~l----~~~~~~~e~~~~~~~~~~~~~-~~l~~~a~~~g~~vlltG~GgD 346 (515)
+...+ .+......++.++..++.... -.+.+.|.+.|++.+.|||.+.
T Consensus 72 f~~~v~~~f~~~y~~g~tpnpC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya~ 124 (360)
T PRK14665 72 FRKQIIDYFIDEYMSGHTPVPCTLCNNYLKWPLLAKIADEMGIFYLATGHYVR 124 (360)
T ss_pred HHHHHHhhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccc
Confidence 22211 111111223433333333222 3456778889999999999985
No 68
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=98.80 E-value=4.8e-08 Score=91.73 Aligned_cols=156 Identities=21% Similarity=0.307 Sum_probs=82.2
Q ss_pred eEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEe--ecCCCChHHHHHHHHHHhCC-CceEEEeCh-hHH----
Q 010213 228 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV--GLEGSPDLKYAKEVADYLGT-VHHEFHFTV-QDG---- 299 (515)
Q Consensus 228 v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~--~~~~~~d~~~A~~va~~lg~-~~~~~~~~~-~~~---- 299 (515)
+.++||||+||+++++.+.+.. ..+.++++ |+....|.+.|+++++++|+ +|+++.++. .++
T Consensus 2 avvl~SGG~DSt~~l~~~~~~~----------~~v~al~~~YGq~~~~El~~a~~i~~~l~v~~~~~i~l~~~~~~~~s~ 71 (209)
T PF06508_consen 2 AVVLFSGGLDSTTCLYWAKKEG----------YEVYALTFDYGQRHRRELEAAKKIAKKLGVKEHEVIDLSFLKEIGGSA 71 (209)
T ss_dssp EEEE--SSHHHHHHHHHHHHH-----------SEEEEEEEESSSTTCHHHHHHHHHHHHCT-SEEEEEE-CHHHHCSCHH
T ss_pred EEEEeCCCHHHHHHHHHHHHcC----------CeEEEEEEECCCCCHHHHHHHHHHHHHhCCCCCEEeeHHHHHhhCCCc
Confidence 5689999999999999988764 46776666 44544589999999999999 999988872 111
Q ss_pred -HHH---HHHHHHhhccCCCC--cccchHHHHHHHHHHHhCCCeEEEeccCccccccCCccccCCCChHHHHHHHHHHHH
Q 010213 300 -IDA---IEEVIYHVETYDVT--TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIK 373 (515)
Q Consensus 300 -~~~---l~~~~~~~e~~~~~--~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~~~~~~~~~~~~~~~~~~~ 373 (515)
.+. +++.-...+..... ..+|.+.+-..+..|.+.|+..++.|.-+++ +.+|+..+ ..|.+.+.+-+.
T Consensus 72 L~~~~~~v~~~~~~~~~~~~t~vP~RN~l~lsiAa~~A~~~g~~~i~~G~~~~D-~~~ypDc~-----~~F~~~~~~~~~ 145 (209)
T PF06508_consen 72 LTDDSIEVPEEEYSEESIPSTYVPFRNGLFLSIAASYAESLGAEAIYIGVNAED-ASGYPDCR-----PEFIDAMNRLLN 145 (209)
T ss_dssp HHHTT------------------TTHHHHHHHHHHHHHHHHT-SEEEE---S-S-TT--GGGS-----HHHHHHHHHHHH
T ss_pred ccCCCcCCcccccccCCCCceEEecCcHHHHHHHHHHHHHCCCCEEEEEECcCc-cCCCCCCh-----HHHHHHHHHHHH
Confidence 110 11100000111111 1234444444556677889999999998877 67887643 233332222111
Q ss_pred hhcccccccccccccccCceeccCCCCH---HHHHHHHcCC
Q 010213 374 ALHQYDCLRANKSTSAWGLEARVPFLDK---DFINVAMAID 411 (515)
Q Consensus 374 ~l~~~~l~r~d~~~~~~g~e~r~PflD~---~lve~~~~lP 411 (515)
.. ....+.+..||++. ++++.+..+.
T Consensus 146 ~~------------~~~~v~i~~P~~~~tK~eiv~~~~~lg 174 (209)
T PF06508_consen 146 LG------------EGGPVRIETPLIDLTKAEIVKLGVELG 174 (209)
T ss_dssp HH------------HTS--EEE-TTTT--HHHHHHHHHHTT
T ss_pred hc------------CCCCEEEEecCCCCCHHHHHHHHHHcC
Confidence 11 23468899999884 5666666554
No 69
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=98.79 E-value=1.5e-08 Score=93.73 Aligned_cols=118 Identities=28% Similarity=0.381 Sum_probs=78.7
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEe--ecCCCChHHHHHHHHHHhCCCceEEEeChhHHH--HH
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV--GLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGI--DA 302 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~--~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~--~~ 302 (515)
+..|.||||+||+++++.|.+.. ..+++.|+ |....-|.+.|+++|+.+|++|+++.++.-.-+ ..
T Consensus 4 kavvl~SGG~DStt~l~~a~~~~----------~ev~alsfdYGQrh~~Ele~A~~iak~lgv~~~iid~~~~~~~~~sa 73 (222)
T COG0603 4 KAVVLLSGGLDSTTCLAWAKKEG----------YEVHALTFDYGQRHRKELEAAKELAKKLGVPHHIIDVDLLGEIGGSA 73 (222)
T ss_pred eEEEEccCChhHHHHHHHHHhcC----------CEEEEEEeeCCCCcHHHHHHHHHHHHHcCCCeEEechhHHhhcCCCc
Confidence 35689999999999999998865 46766665 555567999999999999999998876532101 00
Q ss_pred HH-H---HHH-h--hccCCCC--cccchHHHHHHHHHHHhCCCeEEEeccCccccccCCccc
Q 010213 303 IE-E---VIY-H--VETYDVT--TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 355 (515)
Q Consensus 303 l~-~---~~~-~--~e~~~~~--~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~ 355 (515)
+. + +.. . .++.... ..+|.+.+.+.+-.|...|++.+++|-.+.+ |.|||..
T Consensus 74 Ltd~~~~vp~~~~~~~~~p~t~VP~RN~iflsiA~~~Ae~~g~~~I~~Gv~~~D-~sgYPDc 134 (222)
T COG0603 74 LTDDSIDVPKYEFAEEEIPATFVPARNLIFLSIAAAYAEALGADAIIIGVNEED-FSGYPDC 134 (222)
T ss_pred CcCCCccccccccccccCcceEeccccHHHHHHHHHHHHHcCCCeEEEEecccc-cCCCCCC
Confidence 00 0 000 0 0101111 1234555556667788899999999999877 6678764
No 70
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=98.78 E-value=4.2e-08 Score=93.12 Aligned_cols=154 Identities=19% Similarity=0.237 Sum_probs=92.1
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHHHHHHhCCC-ceEEEeChhHHH--H
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTV-HHEFHFTVQDGI--D 301 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~va~~lg~~-~~~~~~~~~~~~--~ 301 (515)
++.|++|||+||+++++++.+.. .++.++|+.+.. ..|.+.|+++|+++|++ |+++.++.-..+ .
T Consensus 3 kvvVl~SGG~DSt~~l~~a~~~~----------~~v~alt~dygq~~~~El~~a~~ia~~~gi~~h~vid~~~l~~l~~s 72 (231)
T PRK11106 3 RAVVVFSGGQDSTTCLIQALQQY----------DEVHCVTFDYGQRHRAEIDVARELALKLGARAHKVLDVTLLNELAVS 72 (231)
T ss_pred cEEEEeeCcHHHHHHHHHHHhcC----------CeEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc
Confidence 57899999999999999886542 367777776543 45899999999999996 888776531100 0
Q ss_pred HHHHH-H--H--hh--ccCCCCcc--cchHHHHHHHHHHHhCCCeEEEeccCccccccCCccccCCCChHHHHHHHHHHH
Q 010213 302 AIEEV-I--Y--HV--ETYDVTTI--RASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKI 372 (515)
Q Consensus 302 ~l~~~-~--~--~~--e~~~~~~~--~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~~~~~~~~~~~~~~~~~~ 372 (515)
.+.+. + . .. +.+....+ ++.+...+....|.+.|++.++.|-.+|+. ++|+.- +..|.+.+..-+
T Consensus 73 ~Lt~~~~~~p~~~~~~~~~~~~~vP~RN~lflslAa~~A~~~g~~~I~~G~n~~D~-~~YpDc-----r~~Fi~A~~~~~ 146 (231)
T PRK11106 73 SLTRDSIPVPDYEPEADGLPNTFVPGRNILFLTLAAIYAYQVKAEAVITGVCETDF-SGYPDC-----RDEFVKALNHAV 146 (231)
T ss_pred ccccccccCCccccccCCCCCEEEecHHHHHHHHHHHHHHHcCCCEEEEeeccCcC-CCCCCC-----CHHHHHHHHHHH
Confidence 11000 0 0 00 00111111 222222233346788999999999999884 677642 344443322211
Q ss_pred HhhcccccccccccccccCceeccCCCCH---HHHHHHH
Q 010213 373 KALHQYDCLRANKSTSAWGLEARVPFLDK---DFINVAM 408 (515)
Q Consensus 373 ~~l~~~~l~r~d~~~~~~g~e~r~PflD~---~lve~~~ 408 (515)
+ .++..++.+..||++. ++++.+.
T Consensus 147 ~------------~~~~~~i~I~aPl~~lsK~eI~~l~~ 173 (231)
T PRK11106 147 S------------LGMAKDIRFETPLMWLNKAETWALAD 173 (231)
T ss_pred H------------hccCCCcEEEecCCCCCHHHHHHHHH
Confidence 1 1122358899999872 4455544
No 71
>PRK04527 argininosuccinate synthase; Provisional
Probab=98.74 E-value=6.3e-08 Score=98.31 Aligned_cols=113 Identities=15% Similarity=0.209 Sum_probs=77.5
Q ss_pred ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHHHHHHhCC-CceEEEeChhHHHH
Q 010213 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGT-VHHEFHFTVQDGID 301 (515)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~va~~lg~-~~~~~~~~~~~~~~ 301 (515)
..++.+++|||+|||+++.++.+. |.++.++++.... ..|.+.|+++|+.+|+ +|+++.+..+...+
T Consensus 2 ~~kVvVA~SGGvDSSvla~~l~e~----------G~~Viavt~d~gq~~~~El~~a~~~A~~lG~~~~~viD~~eef~e~ 71 (400)
T PRK04527 2 SKDIVLAFSGGLDTSFCIPYLQER----------GYAVHTVFADTGGVDAEERDFIEKRAAELGAASHVTVDGGPAIWEG 71 (400)
T ss_pred CCcEEEEEcCChHHHHHHHHHHHc----------CCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHH
Confidence 357899999999999999998874 2578899886554 4688999999999998 58888776543333
Q ss_pred HHHHHH-----HhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccC--cccc
Q 010213 302 AIEEVI-----YHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEG--SDEI 348 (515)
Q Consensus 302 ~l~~~~-----~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~G--gDel 348 (515)
.+..++ +....|.+++ ......-.+.+.|++.|++.+.+|.. ||..
T Consensus 72 vi~p~i~aNa~y~G~yPl~~~-nR~~~~~~l~e~A~~~G~~~IA~G~tgkgnDq 124 (400)
T PRK04527 72 FVKPLVWAGEGYQGQYPLLVS-DRYLIVDAALKRAEELGTRIIAHGCTGMGNDQ 124 (400)
T ss_pred HHHHHHhcchhhcCCCCCccc-cHHHHHHHHHHHHHHCCCCEEEecCcCCCCch
Confidence 333222 2222343322 11122224667788999999999995 4543
No 72
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.73 E-value=1.1e-07 Score=96.21 Aligned_cols=113 Identities=16% Similarity=0.136 Sum_probs=79.1
Q ss_pred cccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHHHhCCCceEEEeChhHH---H
Q 010213 224 TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDG---I 300 (515)
Q Consensus 224 ~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~~---~ 300 (515)
...+|.+.+|||+||+++++++++. +..+.++++... ..|...|+++|+++|++|+.+.++.+.. +
T Consensus 4 ~~~kVlVa~SGGvDSsv~a~lL~~~----------G~eV~av~~~~~-~~e~~~a~~va~~LGI~~~vvd~~~~f~~~v~ 72 (362)
T PRK14664 4 SKKRVLVGMSGGIDSTATCLMLQEQ----------GYEIVGVTMRVW-GDEPQDARELAARMGIEHYVADERVPFKDTIV 72 (362)
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHHc----------CCcEEEEEecCc-chhHHHHHHHHHHhCCCEEEEeChHHHHHHHH
Confidence 3457999999999999999988764 357888887543 3466789999999999999988764322 2
Q ss_pred HHHHHHHHhhccCCCCcccchHH-HHHHHHHHHhCCCeEEEeccCccc
Q 010213 301 DAIEEVIYHVETYDVTTIRASTP-MFLMSRKIKSLGVKMVISGEGSDE 347 (515)
Q Consensus 301 ~~l~~~~~~~e~~~~~~~~~~~~-~~~l~~~a~~~g~~vlltG~GgDe 347 (515)
+.+.+......+|+++..++... ...+.+.|.+.|+..+.||+.++-
T Consensus 73 ~~~~~~~~~G~tpnpC~~Cn~~iKf~~L~~~A~~~G~~~IATGHyar~ 120 (362)
T PRK14664 73 KNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCAWIATGHYSRL 120 (362)
T ss_pred HHhHHHHHcCCCCCCchhhhHHHHHHHHHHHHHHcCCCEEEECCcccc
Confidence 21112222223455554444333 234678888999999999999964
No 73
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=98.69 E-value=1.2e-07 Score=96.10 Aligned_cols=109 Identities=19% Similarity=0.171 Sum_probs=74.4
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeec-------C-----CCChHHHHHHHHHHhCCCceEEEe
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL-------E-----GSPDLKYAKEVADYLGTVHHEFHF 294 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~-------~-----~~~d~~~A~~va~~lg~~~~~~~~ 294 (515)
+|.+++|||+||+++++++.+.. .++.++++.. . ...|.+.|+++|+++|++|+.+.+
T Consensus 2 kVlValSGGvDSsv~a~lL~~~G----------~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lgIp~~vid~ 71 (352)
T TIGR00420 2 KVIVGLSGGVDSSVSAYLLKQQG----------YEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLGIPLEKVNF 71 (352)
T ss_pred eEEEEEeCCHHHHHHHHHHHHcC----------CeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 57899999999999999998753 5788888731 1 113678899999999999998887
Q ss_pred ChhHHHHHHHHHH---HhhccCCCCcccchHH-HHHHHHHHHhC-CCeEEEeccCc
Q 010213 295 TVQDGIDAIEEVI---YHVETYDVTTIRASTP-MFLMSRKIKSL-GVKMVISGEGS 345 (515)
Q Consensus 295 ~~~~~~~~l~~~~---~~~e~~~~~~~~~~~~-~~~l~~~a~~~-g~~vlltG~Gg 345 (515)
+.+...+.+...+ ....+|+++..++... +..+.+.|.+. |++.+.||+.+
T Consensus 72 ~~~f~~~v~~~~~~~y~~g~tpnpC~~Cnr~iKf~~l~~~a~~~~G~~~IATGHya 127 (352)
T TIGR00420 72 QKEYWNKVFEPFIQEYKEGRTPNPDILCNKFIKFGAFLEYAAELLGNDKIATGHYA 127 (352)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcchhhhHHHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 5432222222222 1223455444443333 23556777776 99999999999
No 74
>PRK00509 argininosuccinate synthase; Provisional
Probab=98.68 E-value=1.3e-07 Score=96.50 Aligned_cols=110 Identities=16% Similarity=0.138 Sum_probs=75.6
Q ss_pred cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHHHhCCCc-eEEEeChhHHHH-HH
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVH-HEFHFTVQDGID-AI 303 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~~~-~~~~~~~~~~~~-~l 303 (515)
.+|.+++|||+||++++.++.+.. |.++.++++......|.+.|+++|+.+|+.+ +.+.+. +++.+ .+
T Consensus 3 ~kVvva~SGGlDSsvla~~l~e~l---------G~eViavt~d~Gq~~dle~a~~~A~~lGi~~~~viD~~-~ef~~~~i 72 (399)
T PRK00509 3 KKVVLAYSGGLDTSVIIKWLKETY---------GCEVIAFTADVGQGEELEPIREKALKSGASEIYVEDLR-EEFVRDYV 72 (399)
T ss_pred CeEEEEEcCCHHHHHHHHHHHHhh---------CCeEEEEEEecCCHHHHHHHHHHHHHcCCCeEEEEcCH-HHHHHHhH
Confidence 368999999999999999998753 2579999987766578999999999999854 444543 23322 22
Q ss_pred HHHH-----HhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCc
Q 010213 304 EEVI-----YHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGS 345 (515)
Q Consensus 304 ~~~~-----~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~Gg 345 (515)
...+ +....|.++.++.....-.+.+.|++.|++++.+|..+
T Consensus 73 ~~~i~~n~~y~g~ypl~~~lcr~~i~~~l~~~A~~~G~~~IA~G~t~ 119 (399)
T PRK00509 73 FPAIRANALYEGKYPLGTALARPLIAKKLVEIARKEGADAVAHGCTG 119 (399)
T ss_pred HHHHHhChHhcCcCCCchHHHHHHHHHHHHHHHHHcCCCEEEeCCCc
Confidence 2222 22233443333333333346677889999999999987
No 75
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=98.66 E-value=1.8e-07 Score=93.11 Aligned_cols=118 Identities=19% Similarity=0.233 Sum_probs=74.8
Q ss_pred HHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC--CCChHHHHHHHH-HHhCCCceEE
Q 010213 216 NAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVA-DYLGTVHHEF 292 (515)
Q Consensus 216 ~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~--~~~d~~~A~~va-~~lg~~~~~~ 292 (515)
+.++..+.. .++.+++|||+||+++++++.+.. |.++.++++... ...|.+.+.+.+ +++|++|+.+
T Consensus 8 ~~l~~~v~~-~kVvValSGGVDSsvla~ll~~~~---------G~~v~av~vd~G~~~~~E~e~~~~~~~~~lgi~~~vv 77 (311)
T TIGR00884 8 EEIREQVGD-AKVIIALSGGVDSSVAAVLAHRAI---------GDRLTCVFVDHGLLRKGEAEQVVKTFGDRLGLNLVYV 77 (311)
T ss_pred HHHHHHhCC-CcEEEEecCChHHHHHHHHHHHHh---------CCCEEEEEEeCCCCChHHHHHHHHHHHHHcCCcEEEE
Confidence 333444443 679999999999999999998865 357888887543 345777776654 5899999988
Q ss_pred EeChhHHHHHHHHHHHhhccCCC-CcccchHHHHHHHHHHHhCC-CeEEEeccCcccc
Q 010213 293 HFTVQDGIDAIEEVIYHVETYDV-TTIRASTPMFLMSRKIKSLG-VKMVISGEGSDEI 348 (515)
Q Consensus 293 ~~~~~~~~~~l~~~~~~~e~~~~-~~~~~~~~~~~l~~~a~~~g-~~vlltG~GgDel 348 (515)
..+.. +...+.. ...+.. ..+........+.+.|++.| ++.+++|+..|.+
T Consensus 78 d~~e~-fl~~l~~----v~~p~~~r~~~~~~~~~~~~~~A~~~g~~~~la~Gt~~dD~ 130 (311)
T TIGR00884 78 DAKER-FLSALKG----VTDPEEKRKIIGRVFIEVFEREAKKIGDAEYLAQGTIYPDV 130 (311)
T ss_pred eCcHH-HHhhhcC----CCChHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCChhh
Confidence 77532 2222211 111100 00111111234556677888 9999999998875
No 76
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=98.65 E-value=2.2e-07 Score=85.30 Aligned_cols=109 Identities=14% Similarity=0.090 Sum_probs=66.0
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CCh----HHHHHHHHHHhCCCceEEEeChhHHH
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPD----LKYAKEVADYLGTVHHEFHFTVQDGI 300 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d----~~~A~~va~~lg~~~~~~~~~~~~~~ 300 (515)
++.++||||+||++++.++.+.. .++.++++.... ..| ...+.+.+..++.+|+...++..+.
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~g----------~~v~av~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~- 69 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKRG----------IEVDALHFNSGPFTSEKAREKVEDLARKLARYSPGHKLVVIIFTFF- 69 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHcC----------CeEEEEEEeCCCCCchHHHHHHHHHHHHHHHhCCCCceEEEeCcHH-
Confidence 36899999999999999998752 567777775432 222 3344445566787776544443321
Q ss_pred HHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccc
Q 010213 301 DAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (515)
Q Consensus 301 ~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDe 347 (515)
..........++..+..........+.+.|.+.|++++++|+.+|.
T Consensus 70 -~~~~~~~~~~~~~~c~~Cr~~~~~~~~~~A~~~g~~~I~~G~~~~D 115 (177)
T cd01712 70 -VQKEIYGYGKEKYRCILCKRMMYRIAEKLAEELGADAIVTGESLGQ 115 (177)
T ss_pred -HHHHHHHhCCCccHhHHHHHHHHHHHHHHHHHcCCCEEEEccCccc
Confidence 1112222222333222222223345567788899999999998776
No 77
>PTZ00323 NAD+ synthase; Provisional
Probab=98.64 E-value=4.9e-07 Score=88.88 Aligned_cols=141 Identities=16% Similarity=0.161 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHhhcc--ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC-CCChHHHHHHHHHHh
Q 010213 209 VLRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPDLKYAKEVADYL 285 (515)
Q Consensus 209 ~l~~~l~~aV~~rl~~--~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~-~~~d~~~A~~va~~l 285 (515)
++-+...+.++.+++. ...+.+.||||+||+++++++.+.+...+. ....+.++..... ...+...|+.+|+.+
T Consensus 28 ~~i~~~~~~L~~~l~~~g~~~vVVglSGGVDSav~aaLa~~alg~~~~---~~~~~~~v~~P~~ss~~~~~~A~~la~~l 104 (294)
T PTZ00323 28 AWIEKKCAKLNEYMRRCGLKGCVTSVSGGIDSAVVLALCARAMRMPNS---PIQKNVGLCQPIHSSAWALNRGRENIQAC 104 (294)
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHHHhccccC---CceEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3334444555555544 567889999999999999999987643110 0012334443322 225778999999999
Q ss_pred CCCceEEEeChhHHHHHHHHHHHhhccCCC-----Cccc---chHHHHHHHHHHHhCCCeEEEecc-Ccccc-ccCCcc
Q 010213 286 GTVHHEFHFTVQDGIDAIEEVIYHVETYDV-----TTIR---ASTPMFLMSRKIKSLGVKMVISGE-GSDEI-FGGYLY 354 (515)
Q Consensus 286 g~~~~~~~~~~~~~~~~l~~~~~~~e~~~~-----~~~~---~~~~~~~l~~~a~~~g~~vlltG~-GgDel-f~Gy~~ 354 (515)
|++|+++.+++ ..+.+...+........ .... .....|.+++.+.+.|...++.|- ..||. .-||..
T Consensus 105 Gi~~~~idi~~--l~~~~~~~i~~~~~~~~~~~~~~n~~ar~R~~~lY~la~~~~~~g~~~lV~GT~N~sE~~~~Gy~t 181 (294)
T PTZ00323 105 GATEVTVDQTE--IHTQLSSLVEKAVGIKGGAFARGQLRSYMRTPVAFYVAQLLSQEGTPAVVMGTGNFDEDGYLGYFC 181 (294)
T ss_pred CCcEEEEECcH--HHHHHHHHHhhhhcccchhhHHHhHHHHHHhHHHHHHHHHHhhcCCCeEEECCCCchhhhHhchHh
Confidence 99999988874 23332222211100000 0011 012246677777777888888888 78885 357754
No 78
>PRK00919 GMP synthase subunit B; Validated
Probab=98.62 E-value=2.6e-07 Score=91.29 Aligned_cols=123 Identities=18% Similarity=0.185 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHHHHHHhCC
Q 010213 210 LRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGT 287 (515)
Q Consensus 210 l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~va~~lg~ 287 (515)
+.+...+.++..+.. .++.+++|||+||+++++++.+.. |.++.++++.... ..|.+.++++|+.+ +
T Consensus 7 ~~~~~~~~l~~~~~~-~kVlVa~SGGVDSsvla~la~~~l---------G~~v~aV~vD~G~~~~~E~e~a~~~~~~~-i 75 (307)
T PRK00919 7 FIEEAIEEIREEIGD-GKAIIALSGGVDSSVAAVLAHRAI---------GDRLTPVFVDTGLMRKGETERIKETFSDM-L 75 (307)
T ss_pred HHHHHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHHh---------CCeEEEEEEECCCCCHHHHHHHHHHHhcc-C
Confidence 333334455556655 789999999999999999998864 3578888886543 45889999999887 8
Q ss_pred CceEEEeChhHHHHHHHHHHHhhccCC-CCcccchHHHHHHHHHHHhCCCeEEEeccCcccc
Q 010213 288 VHHEFHFTVQDGIDAIEEVIYHVETYD-VTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 288 ~~~~~~~~~~~~~~~l~~~~~~~e~~~-~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDel 348 (515)
+|+.+..+.. +.+.+.. ...+. ...+........+.+.|++.|++.+++|...|.+
T Consensus 76 ~~~vvd~~e~-fl~~L~~----v~npe~rr~~c~r~~~~~~~~~A~~~g~~~Ia~Gtn~dD~ 132 (307)
T PRK00919 76 NLRIVDAKDR-FLDALKG----VTDPEEKRKIIGETFIRVFEEVAKEIGAEYLVQGTIAPDW 132 (307)
T ss_pred CcEEEECCHH-HHHhccC----CCChHHhhhHHHHHHHHHHHHHHHHcCCCEEEECCCCcch
Confidence 8888776532 2232221 11111 0001111122345567888999999999998875
No 79
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=98.61 E-value=2.5e-07 Score=88.96 Aligned_cols=134 Identities=22% Similarity=0.231 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCC--ChHHHHHHHHHHh
Q 010213 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEVADYL 285 (515)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~--~d~~~A~~va~~l 285 (515)
+++.+.|++-+++. ....+.+.||||+||+++|+++.+.+.. .++.++.+....+ .+...|+.+|+.+
T Consensus 3 ~~l~~~L~~~~~~~--g~~~vVvglSGGiDSav~A~La~~Alg~--------~~v~~v~mp~~~~~~~~~~~A~~la~~l 72 (242)
T PF02540_consen 3 EALVDFLRDYVKKS--GAKGVVVGLSGGIDSAVVAALAVKALGP--------DNVLAVIMPSGFSSEEDIEDAKELAEKL 72 (242)
T ss_dssp HHHHHHHHHHHHHH--TTSEEEEEETSSHHHHHHHHHHHHHHGG--------GEEEEEEEESSTSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCeEEEEcCCCCCHHHHHHHHHHHhhh--------ccccccccccccCChHHHHHHHHHHHHh
Confidence 34455555555543 2356778999999999999999988732 3688888864333 3678899999999
Q ss_pred CCCceEEEeChhHHHHHHHHHHHhhc-cCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 010213 286 GTVHHEFHFTVQDGIDAIEEVIYHVE-TYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (515)
Q Consensus 286 g~~~~~~~~~~~~~~~~l~~~~~~~e-~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~ 354 (515)
|+++..+++++ ..+.+.+.+.... ......+.....+-.++..+...+. +++....-+|...||..
T Consensus 73 gi~~~~i~i~~--~~~~~~~~~~~~~~~~~~~Ni~aR~Rm~~ly~~a~~~~~-lVlgT~N~sE~~~Gy~T 139 (242)
T PF02540_consen 73 GIEYIVIDIDP--IFDAFLKSLEPADDDLARGNIQARIRMTTLYALANKYNY-LVLGTGNKSELLLGYFT 139 (242)
T ss_dssp TSEEEEEESHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTE-EEBE--CHHHHHHTCSH
T ss_pred CCCeeccchHH--HHHHHhhhhccchhhhhhhhHHHHHHHHHHHHHhcccce-EEecCCcHHHhhcCccc
Confidence 99999988753 3333333221111 0100111222333344444555554 44444456788888864
No 80
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=98.57 E-value=6.5e-07 Score=87.31 Aligned_cols=133 Identities=19% Similarity=0.139 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHh--hccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC-CChHHHHHHHHHH
Q 010213 208 LVLRQAFENAVIKR--LMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-SPDLKYAKEVADY 284 (515)
Q Consensus 208 ~~l~~~l~~aV~~r--l~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~-~~d~~~A~~va~~ 284 (515)
+.+...+.+++++. +....+|.|++|||.||++++.++.+...... ++..+.++++.... ..+.+.++++|+.
T Consensus 10 ~~~~~~v~~~i~~~~li~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~----~~~~l~av~vd~g~~~~~~~~~~~~~~~ 85 (258)
T PRK10696 10 KRLRRQVGQAIADFNMIEEGDRVMVCLSGGKDSYTLLDILLNLQKRAP----INFELVAVNLDQKQPGFPEHVLPEYLES 85 (258)
T ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhCC----CCeEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 45666777777764 24456899999999999999999977532110 01356777764322 2344578999999
Q ss_pred hCCCceEEEeChhHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccc
Q 010213 285 LGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIF 349 (515)
Q Consensus 285 lg~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf 349 (515)
+|++++++.++..... .... .+...............+.+.|.+.|++++++|+-+|+..
T Consensus 86 lgI~~~v~~~~~~~~~---~~~~--~~~~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~dD~~ 145 (258)
T PRK10696 86 LGVPYHIEEQDTYSIV---KEKI--PEGKTTCSLCSRLRRGILYRTARELGATKIALGHHRDDIL 145 (258)
T ss_pred hCCCEEEEEecchhhh---hhhh--ccCCChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchHHHH
Confidence 9999998775432211 1101 0111111111112234566788899999999999999754
No 81
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=98.55 E-value=2.8e-07 Score=86.43 Aligned_cols=115 Identities=23% Similarity=0.342 Sum_probs=73.9
Q ss_pred EEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHHHHHHhCCCceEEEeChhHHHH--HHH
Q 010213 229 GVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTVHHEFHFTVQDGID--AIE 304 (515)
Q Consensus 229 ~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~va~~lg~~~~~~~~~~~~~~~--~l~ 304 (515)
.++||||+||+++++++.+.. .++.++++.+.. ..|.+.|+++|+.+|++|+++.++.-..+. .+.
T Consensus 2 vv~lSGG~DSs~~~~~~~~~g----------~~v~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~~~~~~~~~~~~~~~~ 71 (201)
T TIGR00364 2 VVVLSGGQDSTTCLAIAKDEG----------YEVHAITFDYGQRHSRELESARKIAEALGIEHHVIDLSLLKQLGGSALT 71 (201)
T ss_pred EEEeccHHHHHHHHHHHHHcC----------CcEEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEechhhccccccccc
Confidence 589999999999999987642 578888887543 357889999999999999988775311100 000
Q ss_pred H---HHH-hhccC---CCC--cccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 010213 305 E---VIY-HVETY---DVT--TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (515)
Q Consensus 305 ~---~~~-~~e~~---~~~--~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~ 354 (515)
+ ... ..... ... ..++.+.+-.+...|.+.|+..+++|...|++ +.|+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~A~~~g~~~v~~G~~~~d~-~~~~d 129 (201)
T TIGR00364 72 DESEIPPQKSNEEDTLPNTFVPGRNAIFLSIAASYAEALGAEAVITGVCETDF-SGYPD 129 (201)
T ss_pred CCCCCCCcCccccCCCCCeeecCCcHHHHHHHHHHHHHCCCCEEEEEeccCcC-CCCCC
Confidence 0 000 00000 000 01122222345677889999999999999985 56653
No 82
>PRK08349 hypothetical protein; Validated
Probab=98.51 E-value=6.3e-07 Score=83.82 Aligned_cols=111 Identities=14% Similarity=0.097 Sum_probs=66.1
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHHHhC----CCce-EEEeChhHH-H
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLG----TVHH-EFHFTVQDG-I 300 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg----~~~~-~~~~~~~~~-~ 300 (515)
++.+++|||+||++.+.++.+.. .++.++++.. +..+...++++|++++ ++|+ .+.++..+. .
T Consensus 2 ~~vvllSGG~DS~v~~~~l~~~g----------~~v~av~~d~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 70 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLMLRRG----------VEVYPVHFRQ-DEKKEEKVRELVERLQELHGGKLKDPVVVDAFEEQG 70 (198)
T ss_pred cEEEEccCChhHHHHHHHHHHcC----------CeEEEEEEeC-CHHHHHHHHHHHHHHHHhcCCCcceEEEEcchHHhH
Confidence 46789999999999999887643 5788888876 3356666777777664 7764 233332221 1
Q ss_pred HHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCcccc
Q 010213 301 DAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 301 ~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDel 348 (515)
..+..+......+..+.....+....+.+.|.+.|++.++||+..|+.
T Consensus 71 ~~~~~~~~~~~~~~~c~~cr~~~~~~a~~~A~~~g~~~I~tG~~~~d~ 118 (198)
T PRK08349 71 PVFEKLRELKKEKWTCIFCKYTMYRKAERIAHEIGASAIITGDSLGQV 118 (198)
T ss_pred HHHHHHHhhCCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEecCCchH
Confidence 112211111111211111122233456677889999999999766553
No 83
>PRK13981 NAD synthetase; Provisional
Probab=98.51 E-value=9.3e-07 Score=95.55 Aligned_cols=138 Identities=20% Similarity=0.211 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHhhcc--ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCC--ChHHHHHHHH
Q 010213 207 PLVLRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEVA 282 (515)
Q Consensus 207 ~~~l~~~l~~aV~~rl~~--~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~--~d~~~A~~va 282 (515)
.+++.+.+...++.++.. ...+.+.||||+||+++++++.+.+.. .+++++++....+ .+...|+++|
T Consensus 260 ~~~~~~~l~~~l~~~~~~~~~~~~vvglSGGiDSa~~a~la~~a~g~--------~~v~~~~~p~~~~~~~~~~~a~~~a 331 (540)
T PRK13981 260 EAEDYRALVLGLRDYVRKNGFPGVVLGLSGGIDSALVAAIAVDALGA--------ERVRAVMMPSRYTSEESLDDAAALA 331 (540)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHhCc--------CcEEEEECCCCCCCHHHHHHHHHHH
Confidence 455666666666666644 356889999999999999999887621 3688888875543 4678899999
Q ss_pred HHhCCCceEEEeChhHHHHHHHHHHHhh---ccCCCC--cccchHHHHHHHHHHHhCCCeEEEeccCccccccCCccc
Q 010213 283 DYLGTVHHEFHFTVQDGIDAIEEVIYHV---ETYDVT--TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 355 (515)
Q Consensus 283 ~~lg~~~~~~~~~~~~~~~~l~~~~~~~---e~~~~~--~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~ 355 (515)
+.+|++|+++.+++ ..+.+...+... +..+.. .+.+.+.+..++..|.+.|.-|+=||.- +|+.-||...
T Consensus 332 ~~lgi~~~~i~i~~--~~~~~~~~~~~~~~~~~~~~~~~N~~ar~R~~~l~~~a~~~~~lvlgt~n~-sE~~~Gy~t~ 406 (540)
T PRK13981 332 KNLGVRYDIIPIEP--AFEAFEAALAPLFAGTEPDITEENLQSRIRGTLLMALSNKFGSLVLTTGNK-SEMAVGYATL 406 (540)
T ss_pred HHcCCeEEEEECHH--HHHHHHHHhhhhhcCCCCCchHHHHHHHHHHHHHHHHHhccCCEEEeCCcc-CHHHcCCeEe
Confidence 99999999988764 333333322111 111110 1112233445666677777767777754 4777888653
No 84
>PRK13820 argininosuccinate synthase; Provisional
Probab=98.51 E-value=7.6e-07 Score=90.80 Aligned_cols=111 Identities=21% Similarity=0.216 Sum_probs=73.2
Q ss_pred cceEEeecCCcchHHHHHHHHHHhccccccccCCC-ceeeEEeecCC-CChHHHHHHHHHHhCCCceEEEeChhHHH-HH
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGT-QLHSFCVGLEG-SPDLKYAKEVADYLGTVHHEFHFTVQDGI-DA 302 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~-~i~~~t~~~~~-~~d~~~A~~va~~lg~~~~~~~~~~~~~~-~~ 302 (515)
.+|.+++|||+||++++.++.+.. +. ++.++++.... ..|.+.++++|+.+|++++.+.+.+ ++. +.
T Consensus 3 ~kVvvA~SGGvDSsvll~lL~e~~---------g~~~Viav~vd~g~~~~e~~~a~~~a~~lGi~~~vvd~~e-ef~~~~ 72 (394)
T PRK13820 3 KKVVLAYSGGLDTSVCVPLLKEKY---------GYDEVITVTVDVGQPEEEIKEAEEKAKKLGDKHYTIDAKE-EFAKDY 72 (394)
T ss_pred CeEEEEEeCcHHHHHHHHHHHHhc---------CCCEEEEEEEECCCChHHHHHHHHHHHHcCCCEEEEeCHH-HHHHHH
Confidence 468999999999999999987653 23 78888886543 3588899999999999988877653 233 22
Q ss_pred HHHHHHhh---ccCCCCc-ccchHHHHHHHHHHHhCCCeEEEeccCcc
Q 010213 303 IEEVIYHV---ETYDVTT-IRASTPMFLMSRKIKSLGVKMVISGEGSD 346 (515)
Q Consensus 303 l~~~~~~~---e~~~~~~-~~~~~~~~~l~~~a~~~g~~vlltG~GgD 346 (515)
+...+... +.+..++ .......-.+.+.|++.|++++.+|+.++
T Consensus 73 i~~~i~~n~~~~gYpl~~~~cR~~i~~~l~e~A~e~G~~~IA~G~t~~ 120 (394)
T PRK13820 73 IFPAIKANALYEGYPLGTALARPLIAEKIVEVAEKEGASAIAHGCTGK 120 (394)
T ss_pred HHHHHHhCccccCCcCcHHHHHHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 22222211 1111111 11111122456778899999999999664
No 85
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=98.48 E-value=6.6e-07 Score=83.04 Aligned_cols=108 Identities=12% Similarity=0.126 Sum_probs=71.2
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC--CC--ChHHHHHHHHHHhCCCceEEEeChhHHHHH
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GS--PDLKYAKEVADYLGTVHHEFHFTVQDGIDA 302 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~--~~--~d~~~A~~va~~lg~~~~~~~~~~~~~~~~ 302 (515)
+|.+.+|||.||++++.++.+..... +.++.++++... .. .+.+.++++|+.+|++++.+.++..+....
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~------~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~ 74 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKL------KIRLIAAHVDHGLRPESDEEAEFVQQFCKKLNIPLEIKKVDVKALAKG 74 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHc------CCCEEEEEeCCCCChhHHHHHHHHHHHHHHcCCCEEEEEecchhhccc
Confidence 47899999999999999998754221 235777776533 21 367889999999999999888754321100
Q ss_pred HHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCcccc
Q 010213 303 IEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 303 l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDel 348 (515)
. ...+. .......+..+.+.+++.|++++++|+-+|++
T Consensus 75 ---~---~~~~~--~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D~ 112 (189)
T TIGR02432 75 ---K---KKNLE--EAAREARYDFFEEIAKKHGADYILTAHHADDQ 112 (189)
T ss_pred ---c---CCCHH--HHHHHHHHHHHHHHHHHcCCCEEEEcCccHHH
Confidence 0 00000 00011223356677888999999999999875
No 86
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=98.46 E-value=1.3e-06 Score=89.11 Aligned_cols=108 Identities=19% Similarity=0.186 Sum_probs=69.1
Q ss_pred eEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCCh-HHHHHHHHHHhCCC-ceEEEeChhHHHH-HHH
Q 010213 228 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPD-LKYAKEVADYLGTV-HHEFHFTVQDGID-AIE 304 (515)
Q Consensus 228 v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d-~~~A~~va~~lg~~-~~~~~~~~~~~~~-~l~ 304 (515)
|.+++|||+||++++.++.+.. +.++.++++......+ .+.|+++|+.+|++ |+++.+.. ++.+ .+.
T Consensus 1 Vvva~SGGlDSsvll~~l~e~~---------~~eV~av~~d~Gq~~~~~e~a~~~a~~lG~~~~~viD~~~-ef~~~~i~ 70 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEKG---------GYEVIAVTADVGQPEEEIEAIEEKALKLGAKKHVVVDLRE-EFVEDYIF 70 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHhC---------CCeEEEEEEECCCcchhHHHHHHHHHHcCCCEEEEeccHH-HHHHHhhH
Confidence 4689999999999999998764 2378999987654433 48999999999996 66655532 2332 222
Q ss_pred HHHHhhcc----CCC-CcccchHHHHHHHHHHHhCCCeEEEeccCc
Q 010213 305 EVIYHVET----YDV-TTIRASTPMFLMSRKIKSLGVKMVISGEGS 345 (515)
Q Consensus 305 ~~~~~~e~----~~~-~~~~~~~~~~~l~~~a~~~g~~vlltG~Gg 345 (515)
..+..... +.+ +.+......-.+.+.|++.|++++.+|..+
T Consensus 71 ~~i~an~~~~g~y~l~t~l~R~~i~~~l~~~A~~~Ga~~VA~G~t~ 116 (385)
T cd01999 71 PAIQANALYEGTYPLGTALARPLIAKALVEVAKEEGADAVAHGCTG 116 (385)
T ss_pred HHHHhCccccCCCcCCcHhHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 33322111 111 111111222244677889999999888765
No 87
>PRK00768 nadE NAD synthetase; Reviewed
Probab=98.46 E-value=1.6e-06 Score=83.78 Aligned_cols=143 Identities=14% Similarity=0.090 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHhhcc--ccceEEeecCCcchHHHHHHHHHHhccccccc-cCCCceeeEEeecCCCChHHHHHHHHHHh
Q 010213 209 VLRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASITARHLAGTKAAR-QWGTQLHSFCVGLEGSPDLKYAKEVADYL 285 (515)
Q Consensus 209 ~l~~~l~~aV~~rl~~--~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~-~~~~~i~~~t~~~~~~~d~~~A~~va~~l 285 (515)
+..+.+.+.++.++.. ...+.+-||||+||+++++++.+.....+.++ .....+.++...+....+...|+.+|+.+
T Consensus 20 ~~~~~i~~~L~~~l~~~g~~g~VlGlSGGIDSav~a~L~~~A~~~~~~~~~~~~~~~~~l~mP~~~~~~~~da~~la~~l 99 (268)
T PRK00768 20 EEIRRRVDFLKDYLKKSGLKSLVLGISGGQDSTLAGRLAQLAVEELRAETGDDDYQFIAVRLPYGVQADEDDAQDALAFI 99 (268)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHHhcccccCcceeEEEEECCCCCcCCHHHHHHHHHhc
Confidence 3334444555555533 24567889999999999999888764321100 00011444444433345688999999999
Q ss_pred CC-CceEEEeChhHHHHHHHHHHHhhcc-CCC---CcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 010213 286 GT-VHHEFHFTVQDGIDAIEEVIYHVET-YDV---TTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (515)
Q Consensus 286 g~-~~~~~~~~~~~~~~~l~~~~~~~e~-~~~---~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~ 354 (515)
|+ ++.++++++ ..+.+.+.+...+. ... ..+.+-..+-.++..|...|.-|+=||. -+|+.-||..
T Consensus 100 gi~~~~~i~I~~--~~~~~~~~l~~~~~~~~~~a~~NiqARlRm~~Ly~~An~~~~lvlgT~N-~sE~~~Gy~T 170 (268)
T PRK00768 100 QPDRVLTVNIKP--AVDASVAALEAAGIELSDFVKGNIKARERMIAQYAIAGATGGLVVGTDH-AAEAVTGFFT 170 (268)
T ss_pred CCCeeEEEECHH--HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHccCCCEEEcCCc-ccHHHhCcee
Confidence 99 788877653 34444333221000 000 1112223444556666677766666664 5578888865
No 88
>PLN00200 argininosuccinate synthase; Provisional
Probab=98.45 E-value=1.3e-06 Score=89.37 Aligned_cols=111 Identities=16% Similarity=0.154 Sum_probs=71.3
Q ss_pred cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCC-ChHHHHHHHHHHhCCCceEEEeChhHHHHH-H
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS-PDLKYAKEVADYLGTVHHEFHFTVQDGIDA-I 303 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~-~d~~~A~~va~~lg~~~~~~~~~~~~~~~~-l 303 (515)
.+|++++|||+||++++.++.+.. +.++.++++..... .|.+.|+++|+.+|++|+.+.--.+++.+. +
T Consensus 6 ~kVvva~SGGlDSsvla~~L~e~~---------G~eViav~id~Gq~~~el~~a~~~A~~lGi~~~~v~dl~~ef~~~~i 76 (404)
T PLN00200 6 NKVVLAYSGGLDTSVILKWLRENY---------GCEVVCFTADVGQGIEELEGLEAKAKASGAKQLVVKDLREEFVRDYI 76 (404)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHhh---------CCeEEEEEEECCCChHHHHHHHHHHHHcCCCEEEEEeCHHHHHHhhc
Confidence 478999999999999999997753 25789999876544 588999999999999875543223333322 1
Q ss_pred HHHHHhhccCCCC---cccch--HHHHHHHHHHHhCCCeEEEeccCc
Q 010213 304 EEVIYHVETYDVT---TIRAS--TPMFLMSRKIKSLGVKMVISGEGS 345 (515)
Q Consensus 304 ~~~~~~~e~~~~~---~~~~~--~~~~~l~~~a~~~g~~vlltG~Gg 345 (515)
...+.....+... .-..+ ...-.+.+.|++.|++++.+|..|
T Consensus 77 ~p~i~~Na~ye~~Y~~~tsl~Rp~i~~~lv~~A~~~G~~~VahG~tg 123 (404)
T PLN00200 77 FPCLRANAIYEGKYLLGTSMARPLIAKAMVDIAKEVGADAVAHGATG 123 (404)
T ss_pred CHHHHcCCcccceeccccchhhHHHHHHHHHHHHHcCCCEEEeCCcC
Confidence 1222111111110 00011 122345677889999999888766
No 89
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=98.44 E-value=7.5e-07 Score=87.87 Aligned_cols=108 Identities=19% Similarity=0.207 Sum_probs=71.6
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC--CCChHHHHHHHHHHhCC-CceEEEeChhHHHHHH
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYLGT-VHHEFHFTVQDGIDAI 303 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~--~~~d~~~A~~va~~lg~-~~~~~~~~~~~~~~~l 303 (515)
++.+++|||+||+++++++.+.. |.++.++++... ...|.+.++++|+.++. +|+.+..+.. +.+.+
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~l---------G~~v~aV~vd~g~~~~~E~~~~~~~~~~~g~i~~~vvd~~e~-fl~~l 70 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKAI---------GDRLTCVFVDNGLLRKNEAERVEELFSKLLGINLIVVDASER-FLSAL 70 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHHh---------CCcEEEEEecCCCCChHHHHHHHHHHHHhCCCcEEEEcCcHH-HHHHh
Confidence 36789999999999999999864 356888887543 24688899999998886 8888776532 22221
Q ss_pred HHHHHhhccCC-CCcccchHHHHHHHHHHHhCC-CeEEEeccCcccc
Q 010213 304 EEVIYHVETYD-VTTIRASTPMFLMSRKIKSLG-VKMVISGEGSDEI 348 (515)
Q Consensus 304 ~~~~~~~e~~~-~~~~~~~~~~~~l~~~a~~~g-~~vlltG~GgDel 348 (515)
.. ...+. ...+........+.+.|++.| ++.+++|+.+|.+
T Consensus 71 ~~----v~npe~rr~~~g~~~~~~l~~~A~~~g~~~~Ia~Gh~~dD~ 113 (295)
T cd01997 71 KG----VTDPEEKRKIIGETFIEVFEEEAKKLGLAEYLAQGTLYPDV 113 (295)
T ss_pred cC----CCCHHHHHHHhhHHHHHHHHHHHHHcCCCCEEEECCcccch
Confidence 11 10110 000001112234567788899 9999999999876
No 90
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.42 E-value=1.2e-06 Score=87.47 Aligned_cols=125 Identities=18% Similarity=0.207 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEe--ecCC--CChHHHHHHHHHHh
Q 010213 210 LRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV--GLEG--SPDLKYAKEVADYL 285 (515)
Q Consensus 210 l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~--~~~~--~~d~~~A~~va~~l 285 (515)
+...+.++++....-+.+|.|++|||.||++++.++.+.... ..+.++++ ++.. ..+...++.+|+.+
T Consensus 6 ~~~~v~~~i~~~~~~~~~ilVavSGGkDS~~ll~~L~~l~~~--------~~~~a~~Vd~~~~~~~~~~~~~~~~~~~~~ 77 (298)
T COG0037 6 LERKVKRAIREFNLIEYKILVAVSGGKDSLALLHLLKELGRR--------IEVEAVHVDHGLRGYSDQEAELVEKLCEKL 77 (298)
T ss_pred HHHHHHHHHHhccccCCeEEEEeCCChHHHHHHHHHHHhccC--------ceEEEEEecCCCCCccchHHHHHHHHHHHh
Confidence 444444444443221568999999999999999999987521 25666665 3433 35678889999999
Q ss_pred CCCceEEEeChhHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccc
Q 010213 286 GTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIF 349 (515)
Q Consensus 286 g~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf 349 (515)
++++++..++........+ ..............++.+.|.+.|+++++||+.+|...
T Consensus 78 ~~~~~v~~~~~~~~~~~~~-------~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~dD~~ 134 (298)
T COG0037 78 GIPLIVERVTDDLGRETLD-------GKSICAACRRLRRGLLYKIAKELGADKIATGHHLDDQA 134 (298)
T ss_pred CCceEEEEEEeeccccccC-------CCChhHHHHHHHHHHHHHHHHHcCCCeEEeccCcHHHH
Confidence 9988777765432211110 00111111223345678889999999999999999754
No 91
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=98.41 E-value=1.4e-06 Score=72.31 Aligned_cols=76 Identities=29% Similarity=0.296 Sum_probs=57.8
Q ss_pred eEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHHHhCCCceEEEeChhHHHHHHHHHH
Q 010213 228 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVI 307 (515)
Q Consensus 228 v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~~~~ 307 (515)
+.+.+|||+||++++.++.+.. .++.++++.....+|...+++.++.
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 47 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLG----------YQVIAVTVDHGISPRLEDAKEIAKE----------------------- 47 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhC----------CCEEEEEEcCCCcccHHHHHHHHHH-----------------------
Confidence 4689999999999999998764 4677888765544566777777666
Q ss_pred HhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCcccccc
Q 010213 308 YHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFG 350 (515)
Q Consensus 308 ~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~ 350 (515)
.....+.+.+++.|++.+++|+..|.+..
T Consensus 48 --------------~r~~~~~~~a~~~g~~~i~~g~~~~D~~~ 76 (103)
T cd01986 48 --------------AREEAAKRIAKEKGAETIATGTRRDDVAN 76 (103)
T ss_pred --------------HHHHHHHHHHHHcCCCEEEEcCCcchHHH
Confidence 12335567788899999999999998653
No 92
>PRK00074 guaA GMP synthase; Reviewed
Probab=98.41 E-value=2e-06 Score=91.71 Aligned_cols=126 Identities=18% Similarity=0.181 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHH-HHHH
Q 010213 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKE-VADY 284 (515)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~-va~~ 284 (515)
+.+.+...+.+++.+.. .++.+++|||+||+++++++.+.. |.++.++++...- .+|...+.+ +|+.
T Consensus 199 ~~~~~~~~~~l~~~v~~-~~vlva~SGGvDS~vll~ll~~~l---------g~~v~av~vd~g~~~~~e~~~~~~~~a~~ 268 (511)
T PRK00074 199 ENFIEEAIEEIREQVGD-KKVILGLSGGVDSSVAAVLLHKAI---------GDQLTCVFVDHGLLRKNEAEQVMEMFREH 268 (511)
T ss_pred HHHHHHHHHHHHHhcCC-CcEEEEeCCCccHHHHHHHHHHHh---------CCceEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 34444444556666654 689999999999999999998875 2568888875432 356667765 6799
Q ss_pred hCCCceEEEeChhHHHHHHHHHHHhhccCC-CCcccchHHHHHHHHHHHhC-CCeEEEeccCcccc
Q 010213 285 LGTVHHEFHFTVQDGIDAIEEVIYHVETYD-VTTIRASTPMFLMSRKIKSL-GVKMVISGEGSDEI 348 (515)
Q Consensus 285 lg~~~~~~~~~~~~~~~~l~~~~~~~e~~~-~~~~~~~~~~~~l~~~a~~~-g~~vlltG~GgDel 348 (515)
+|++++.+.++.. +.+.+.. ...+. ...+........+.+.|++. |++.++||+..|.+
T Consensus 269 lgi~~~vvd~~~~-f~~~l~g----~~~~~~~r~~~~~~~~~~~~~~a~~~~g~~~latGhn~dD~ 329 (511)
T PRK00074 269 FGLNLIHVDASDR-FLSALAG----VTDPEEKRKIIGREFIEVFEEEAKKLGGVKFLAQGTLYPDV 329 (511)
T ss_pred cCCcEEEEccHHH-HHHhccC----CCCcHHhhhhhhHHHHHHHHHHHHHccCCCEEEECCCcchh
Confidence 9999998776432 2222111 11110 00111111223456778888 99999999988775
No 93
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=3e-06 Score=81.02 Aligned_cols=118 Identities=20% Similarity=0.206 Sum_probs=79.4
Q ss_pred cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEee----cC-------CCChHHHHHHHHHHhCCCceEEEe
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG----LE-------GSPDLKYAKEVADYLGTVHHEFHF 294 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~----~~-------~~~d~~~A~~va~~lg~~~~~~~~ 294 (515)
.+|.|++|||+||++-|.++++.+ .++..+-+. ++ ...|...|+.||++++++.+.+++
T Consensus 6 ~~VvvamSgGVDSsVaa~Ll~~~g----------~~v~gv~M~nWd~~de~~s~cp~e~D~~da~~Vc~~LnI~~~~Vnf 75 (377)
T KOG2805|consen 6 DRVVVAMSGGVDSSVAARLLAARG----------YNVTGVFMKNWDSLDEFGSQCPAERDWKDAKRVCKQLNIPLHQVNF 75 (377)
T ss_pred ceEEEEecCCchHHHHHHHHHhcC----------CCeeEEeeeccccccccccCCCchhhHHHHHHHHHHhCCeeEEEee
Confidence 468899999999999999988764 566655542 11 125889999999999999999999
Q ss_pred ChhHHHHHHHHHHHhh---ccCCCCcccchHHHHH-HHHHH-HhCCCeEEEeccCccccccCCc
Q 010213 295 TVQDGIDAIEEVIYHV---ETYDVTTIRASTPMFL-MSRKI-KSLGVKMVISGEGSDEIFGGYL 353 (515)
Q Consensus 295 ~~~~~~~~l~~~~~~~---e~~~~~~~~~~~~~~~-l~~~a-~~~g~~vlltG~GgDelf~Gy~ 353 (515)
..+.+.+.+..++... -+|++...++-...+- +.+.| ...|.+-+.||+.|-.+++-+.
T Consensus 76 ~kEYW~~Vfs~~L~~Y~~G~TPNPDI~CN~~IKFg~~~~~a~en~~~d~latGHYAr~~~~~~~ 139 (377)
T KOG2805|consen 76 VKEYWNDVFSPFLEEYENGRTPNPDILCNKHIKFGKFFKHAIENLGYDWLATGHYARVVLEDED 139 (377)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCccccceeeccHHHHHHHHhcCCCeEEeeeeeeeecCccc
Confidence 8776666555554322 2344333333211121 22222 3458889999999987776554
No 94
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=98.32 E-value=1.6e-06 Score=80.08 Aligned_cols=105 Identities=13% Similarity=0.149 Sum_probs=68.6
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--C--ChHHHHHHHHHHhCCCceEEEeChhHHHHH
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--S--PDLKYAKEVADYLGTVHHEFHFTVQDGIDA 302 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~--~d~~~A~~va~~lg~~~~~~~~~~~~~~~~ 302 (515)
++.+++|||.||++++.++.+..... +.++.++++.... . .+...++++|+.+|++++.+......
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~------~~~v~~v~id~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---- 70 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRL------GLRLVAVHVDHGLRPESDEEAAFVADLCAKLGIPLYILVVALAP---- 70 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHc------CCcEEEEEecCCCCchHHHHHHHHHHHHHHcCCcEEEEeecccc----
Confidence 47899999999999999998865311 1367888875432 2 46788999999999998876211000
Q ss_pred HHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCcccc
Q 010213 303 IEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 303 l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDel 348 (515)
..........-......+.+.|.+.|++.+++|+-+|++
T Consensus 71 -------~~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD~ 109 (185)
T cd01992 71 -------KPGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHADDQ 109 (185)
T ss_pred -------CCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHHH
Confidence 000000000011222356677888999999999999874
No 95
>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices. Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.
Probab=98.31 E-value=1e-05 Score=71.03 Aligned_cols=111 Identities=20% Similarity=0.370 Sum_probs=75.7
Q ss_pred cEEEEEeeEEcChHHHHHHhcCCC--ccCCChHHHHHHHHHHHHHhhhhccccceEEEEEECCCCEEEEEecCCCcceeE
Q 010213 69 KIVVTVNGEIYNHEALRERLTNHK--FRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLY 146 (515)
Q Consensus 69 ~~~~~~nGei~n~~~L~~~l~~~~--~~~~~D~e~i~~~~~~~G~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLy 146 (515)
+...-.-|.|||+.-|+.-...+. -..-+|+|++..++.+.|..++.-.+|+|+|.+=|++ ++|.+..|.-|..|+|
T Consensus 48 ~~tayLIGsiyNr~~L~~lag~~eg~a~v~nd~ElL~~~~~~lG~~aLsLAEGdfcffiE~kn-g~L~l~Tds~G~~pv~ 126 (201)
T PF09147_consen 48 RGTAYLIGSIYNRRFLRGLAGMWEGHAYVLNDAELLYTIFTRLGNSALSLAEGDFCFFIEDKN-GELTLITDSRGFNPVY 126 (201)
T ss_dssp TEEEEEES--S-HHHHHHHHTTT-GGGGG--HHHHHHHHHHHH-GGGGGG--SSEEEEEEETT-SEEEEEE-SSSSS-EE
T ss_pred CccEEEEEEeccHHHHHHhhheeeccceeeccHHHHHHHHHHhhhhhhhhhcCceEEEEecCC-CcEEEEecCCCCceEE
Confidence 345667899999988776552111 1245899999999999999999999999999998874 9999999999999999
Q ss_pred EEEecCcEEEEEcCccccccc--------------------------CCcceEeCCCeEEEe
Q 010213 147 IGWGLDGSIWISSELKGLNDD--------------------------CEHFEAFPPGHLYSS 182 (515)
Q Consensus 147 y~~~~~~~~~faSe~~~l~~~--------------------------~~~i~~l~pG~~~~~ 182 (515)
.-+ ++..++...+|-+-.. .+++.++.||++-.+
T Consensus 127 lV~--~~~~WiTn~LK~V~~~eg~~a~df~~E~~v~q~~l~~d~~sPi~na~RlkPGsin~l 186 (201)
T PF09147_consen 127 LVQ--SKFIWITNSLKLVSAVEGEGAFDFMPESLVIQSSLRPDNFSPIKNAQRLKPGSINVL 186 (201)
T ss_dssp EEE--SSSEEEES-HHHHHHHH-TTSS-B--HHHHSS-S---TT--SBTTEEEE-SSEEEEE
T ss_pred EEe--cCceEEecceEEEEEeeccccccccchhHHHhhhccCCCcCccccceecCCCceEEE
Confidence 875 3467777777654321 257889999998544
No 96
>PLN02347 GMP synthetase
Probab=98.31 E-value=3.3e-06 Score=89.98 Aligned_cols=121 Identities=16% Similarity=0.201 Sum_probs=76.4
Q ss_pred HHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeec--CCCChHHHH-HHHHHHhCCCceEE
Q 010213 216 NAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL--EGSPDLKYA-KEVADYLGTVHHEF 292 (515)
Q Consensus 216 ~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~--~~~~d~~~A-~~va~~lg~~~~~~ 292 (515)
+.++..+..+.++.++||||+||+++|+++++.+ |.++.++++.. -...|...+ +.+|+++|++|+.+
T Consensus 220 ~~i~~~~~~~~~vvvalSGGVDSsvla~l~~~al---------G~~v~av~id~g~~~~~E~~~~~~~~a~~lgi~~~vv 290 (536)
T PLN02347 220 ELIKATVGPDEHVICALSGGVDSTVAATLVHKAI---------GDRLHCVFVDNGLLRYKEQERVMETFKRDLHLPVTCV 290 (536)
T ss_pred HHHHHHhccCCeEEEEecCChhHHHHHHHHHHHh---------CCcEEEEEEeCCCCChhHHHHHHHHHHHHcCCcEEEE
Confidence 4555566667889999999999999999999865 35788888863 333566666 77999999999998
Q ss_pred EeChhHHHHHHHHHHHhhccCCCCcccch--HHHH-HHH-HHHHhCC--CeEEEeccCccccc
Q 010213 293 HFTVQDGIDAIEEVIYHVETYDVTTIRAS--TPMF-LMS-RKIKSLG--VKMVISGEGSDEIF 349 (515)
Q Consensus 293 ~~~~~~~~~~l~~~~~~~e~~~~~~~~~~--~~~~-~l~-~~a~~~g--~~vlltG~GgDelf 349 (515)
.+++ .+++.++.+. ++.+-.-+.-. +..+ .+. +.+.+.| ++.++.|.-.|.+.
T Consensus 291 d~~e-~fl~~l~~~~---~pe~k~~~~~~~f~~~f~~~~~~~~~~~~~~~~~l~qGt~~~D~~ 349 (536)
T PLN02347 291 DASE-RFLSKLKGVT---DPEKKRKIIGAEFIEVFDEFAHKLEQKLGKKPAFLVQGTLYPDVI 349 (536)
T ss_pred eCcH-HHHhhCCCCC---ChHHhcchhCchHHHHHHHHHHHHHHhhCCCCcEEccCCcccccc
Confidence 8763 3344332221 11111111111 1111 122 2222334 48899999888876
No 97
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=98.30 E-value=2.8e-06 Score=87.83 Aligned_cols=109 Identities=17% Similarity=0.189 Sum_probs=70.8
Q ss_pred ccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeec---CCCChHHHHHHHHHHhC-----CCceEEEe
Q 010213 223 MTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL---EGSPDLKYAKEVADYLG-----TVHHEFHF 294 (515)
Q Consensus 223 ~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~---~~~~d~~~A~~va~~lg-----~~~~~~~~ 294 (515)
.+++++.++||||+||+++++++.+.. .++.++++.. ....+...++++|+.++ ++|+.+++
T Consensus 174 g~~gkvvvllSGGiDS~vaa~l~~k~G----------~~v~av~~~~~~~~~~~~~~~~~~~a~~l~~~~~~i~~~vv~~ 243 (394)
T PRK01565 174 GTSGKALLLLSGGIDSPVAGYLAMKRG----------VEIEAVHFHSPPYTSERAKEKVIDLARILAKYGGRIKLHVVPF 243 (394)
T ss_pred CCCCCEEEEECCChhHHHHHHHHHHCC----------CEEEEEEEeCCCCCcHHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 355778999999999999999987743 5677777633 22346677888888884 88888876
Q ss_pred ChhHHHHHHHHHHHhhccCC-CCcccc-hHHHHHHHHHHHhCCCeEEEeccCcccc
Q 010213 295 TVQDGIDAIEEVIYHVETYD-VTTIRA-STPMFLMSRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 295 ~~~~~~~~l~~~~~~~e~~~-~~~~~~-~~~~~~l~~~a~~~g~~vlltG~GgDel 348 (515)
++. ...+.. ..+. ...+.. ...+-.+...|.+.|+.++.||+..|++
T Consensus 244 ~~~--~~~i~~-----~~~~~~~~v~~Rr~~~~~a~~~A~~~g~~~IvtG~~~~d~ 292 (394)
T PRK01565 244 TEI--QEEIKK-----KVPESYLMTLMRRFMMRIADKIAEKRGALAIVTGESLGQV 292 (394)
T ss_pred HHH--HHHHhh-----cCCCceEEEeHHHHHHHHHHHHHHHcCCCEEEEccccccc
Confidence 542 122211 1111 011111 1222345667888999999999998765
No 98
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=98.29 E-value=3.9e-06 Score=86.00 Aligned_cols=108 Identities=16% Similarity=0.118 Sum_probs=69.1
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC-CChHHHHHHHHHHhCC-CceEEEeChhHHHHH--
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-SPDLKYAKEVADYLGT-VHHEFHFTVQDGIDA-- 302 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~-~~d~~~A~~va~~lg~-~~~~~~~~~~~~~~~-- 302 (515)
+|.+++|||+||++++.++.+.. .++.++++.... ..|.+.+++.|+.+|+ +|+++.+.. ++.+.
T Consensus 1 kVvla~SGGlDSsvll~~l~e~g----------~~V~av~id~Gq~~~e~~~a~~~a~~lGi~~~~viD~~~-ef~~~~~ 69 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREKG----------YEVIAYTADVGQPEEDIDAIPEKALEYGAENHYTIDARE-EFVKDYG 69 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHcC----------CEEEEEEEecCCChHHHHHHHHHHHHhCCCeEEEEeCHH-HHHHhhc
Confidence 47899999999999999987652 578888886544 3588899999999997 687776643 33322
Q ss_pred HHHHH----HhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCc
Q 010213 303 IEEVI----YHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGS 345 (515)
Q Consensus 303 l~~~~----~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~Gg 345 (515)
++.+. +...-+....+.-....-.+.+.|++.|++++.+|.-+
T Consensus 70 ~~~i~~n~~y~~~Y~l~t~laR~li~~~l~~~A~~~G~~~Ia~G~t~ 116 (394)
T TIGR00032 70 FAAIQANAFYEGTYPLSTALARPLIAKKLVEAAKKEGANAVAHGCTG 116 (394)
T ss_pred hhhhcCCccccCcccccchhhHHHHHHHHHHHHHHcCCCEEEECccC
Confidence 11111 11101110000001111235677889999999999855
No 99
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=98.28 E-value=2.8e-06 Score=78.31 Aligned_cols=104 Identities=16% Similarity=0.152 Sum_probs=62.2
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeec--CCC--ChHHHHHHHHHHhCCCceEEEeChhHHHHH
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL--EGS--PDLKYAKEVADYLGTVHHEFHFTVQDGIDA 302 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~--~~~--~d~~~A~~va~~lg~~~~~~~~~~~~~~~~ 302 (515)
+|.|++|||.||++++.++.+..... +.++.++++.. ... .|....+++++.+|++++...++..
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~------~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~~~~~----- 69 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRN------GIKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVRIDED----- 69 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTT------TTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE--CH-----
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhc------CCCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEEeeee-----
Confidence 47899999999999999999875322 24677777653 322 3567889999999999998876530
Q ss_pred HHHHHHhhccCCCCcccch-HHHHHHHHHHHhCCCeEEEeccCcccc
Q 010213 303 IEEVIYHVETYDVTTIRAS-TPMFLMSRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 303 l~~~~~~~e~~~~~~~~~~-~~~~~l~~~a~~~g~~vlltG~GgDel 348 (515)
............ ....++.+.|.+.|++++++|+-.|..
T Consensus 70 -------~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~dD~ 109 (182)
T PF01171_consen 70 -------RKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHLDDQ 109 (182)
T ss_dssp -------CCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHHHH
T ss_pred -------ecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCCcc
Confidence 000000000011 112356788899999999999999874
No 100
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=98.24 E-value=7.9e-06 Score=83.34 Aligned_cols=112 Identities=20% Similarity=0.237 Sum_probs=70.2
Q ss_pred ccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHHHhCCCce-----EEEeChh
Q 010213 223 MTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHH-----EFHFTVQ 297 (515)
Q Consensus 223 ~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~~~~-----~~~~~~~ 297 (515)
.+.+++.+++|||+||++.+.++.+.+ .++.++++... ..+.+.++++|+.++..+. .+.++..
T Consensus 178 Gs~gkvlvllSGGiDSpVAa~ll~krG----------~~V~~v~f~~g-~~~~e~v~~la~~L~~~~~~~~i~l~~v~~~ 246 (381)
T PRK08384 178 GTQGKVVALLSGGIDSPVAAFLMMKRG----------VEVIPVHIYMG-EKTLEKVRKIWNQLKKYHYGGKAELIVVKPQ 246 (381)
T ss_pred CCCCcEEEEEeCChHHHHHHHHHHHcC----------CeEEEEEEEeC-HHHHHHHHHHHHHhcccccCCcceEEEEChH
Confidence 356789999999999999999998863 57777777432 3467788999999884322 2223322
Q ss_pred H---HHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCcccc
Q 010213 298 D---GIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 298 ~---~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDel 348 (515)
+ +...+.+.. .+.+ .+.++....+..+.+.|.+.|++.++||+..+.+
T Consensus 247 ~~~~v~~~i~~~~--~~~~-~C~~Ckr~m~r~a~~iA~~~g~~~IaTGhslgqv 297 (381)
T PRK08384 247 ERERIIQKLKELK--KENY-TCVFCKFMMVKHADRIAKEFGAKGIVMGDSLGQV 297 (381)
T ss_pred HHHHHHHHHHHhc--cCCC-chHHHHHHHHHHHHHHHHHcCCCEEEEcccchhH
Confidence 1 222222111 1111 1122222223455677889999999999987664
No 101
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=98.22 E-value=8.3e-06 Score=83.67 Aligned_cols=111 Identities=19% Similarity=0.184 Sum_probs=69.0
Q ss_pred cccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC---CChHHHHHHHHHHhC---CCceEEEeChh
Q 010213 224 TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG---SPDLKYAKEVADYLG---TVHHEFHFTVQ 297 (515)
Q Consensus 224 ~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~---~~d~~~A~~va~~lg---~~~~~~~~~~~ 297 (515)
+++++.+++|||+||++.++++.+.. .++.++++.... ..+...++.+|+.++ .+...+.++-.
T Consensus 171 ~~~kvlvllSGGiDS~vaa~ll~krG----------~~V~av~~~~~~~~~~~~~~~v~~l~~~l~~~~~~~~l~~v~~~ 240 (371)
T TIGR00342 171 TQGKVLALLSGGIDSPVAAFMMMKRG----------CRVVAVHFFNEPAASEKAREKVERLANSLNETGGSVKLYVFDFT 240 (371)
T ss_pred cCCeEEEEecCCchHHHHHHHHHHcC----------CeEEEEEEeCCCCccHHHHHHHHHHHHHHhhcCCCceEEEEeCH
Confidence 45678999999999999999997753 577777775432 246678899999884 32233334333
Q ss_pred HHHHHHHHHHHhhccCCCCcccc-hHHHHHHHHHHHhCCCeEEEeccCcccc
Q 010213 298 DGIDAIEEVIYHVETYDVTTIRA-STPMFLMSRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 298 ~~~~~l~~~~~~~e~~~~~~~~~-~~~~~~l~~~a~~~g~~vlltG~GgDel 348 (515)
+... .......... .++.. ...+-.+.+.|.+.|++.++||+..|++
T Consensus 241 ~~~~---~i~~~~~~~~-~cv~cRr~m~~~a~~~A~~~g~~~I~tG~~l~d~ 288 (371)
T TIGR00342 241 DVQE---EIIHIIPEGY-TCVLCRRMMYKAASKVAEKEGCLAIVTGESLGQV 288 (371)
T ss_pred HHHH---HHHhcCCCCc-eeHhHHHHHHHHHHHHHHHcCCCEEEEccChHhh
Confidence 3322 2221111111 11111 1222345677888999999999998874
No 102
>PRK02628 nadE NAD synthetase; Reviewed
Probab=98.19 E-value=1.4e-05 Score=88.28 Aligned_cols=144 Identities=15% Similarity=0.103 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHhhcc--ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCC--hHHHHHHHH
Q 010213 207 PLVLRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSP--DLKYAKEVA 282 (515)
Q Consensus 207 ~~~l~~~l~~aV~~rl~~--~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~--d~~~A~~va 282 (515)
.+++.+.+...++++++. ...+.+.||||+||+++++++.+....-.. ...++.++++...+++ ....|+++|
T Consensus 341 ~~~~~~~~v~~l~~~~~~~~~~~vvvglSGGiDSal~l~l~~~a~~~lg~---~~~~v~~v~mp~~~ss~~s~~~a~~la 417 (679)
T PRK02628 341 CYEAYNIQVSGLAQRLRATGLKKVVIGISGGLDSTHALLVAAKAMDRLGL---PRKNILAYTMPGFATTDRTKNNAVALM 417 (679)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHhhCC---CcceEEEEECCCCCCCHHHHHHHHHHH
Confidence 355566666667776643 457889999999999999998877421100 0046788887433343 457899999
Q ss_pred HHhCCCceEEEeChhHHHHHHHHHHHhh-c---cCCCC---cccchHHHHHHHHHHHhCCCeEEEeccCccccccCCccc
Q 010213 283 DYLGTVHHEFHFTVQDGIDAIEEVIYHV-E---TYDVT---TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 355 (515)
Q Consensus 283 ~~lg~~~~~~~~~~~~~~~~l~~~~~~~-e---~~~~~---~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~ 355 (515)
+.+|++|+++.+.+ ..+...+.+... . ..... .+.+-+.+..++..|.+.|..|+-|| .-+|+.-||..+
T Consensus 418 ~~LGi~~~~i~I~~--~~~~~~~~l~~~~~~~~~~~~~t~~N~qaR~R~~~L~~~An~~g~lvl~Tg-n~sE~~~Gy~T~ 494 (679)
T PRK02628 418 KALGVTAREIDIRP--AALQMLKDIGHPFARGEPVYDVTFENVQAGERTQILFRLANQHGGIVIGTG-DLSELALGWCTY 494 (679)
T ss_pred HHhCCeEEEEEcHH--HHHHHHHHhccccccCCcccchhhhhhhHHHHHHHHHHHHhhcCcEEEcCC-chhhHHhCceec
Confidence 99999999988743 233222222110 0 00000 12333455677888889999999999 455778888765
Q ss_pred c
Q 010213 356 H 356 (515)
Q Consensus 356 ~ 356 (515)
.
T Consensus 495 ~ 495 (679)
T PRK02628 495 G 495 (679)
T ss_pred C
Confidence 4
No 103
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=98.15 E-value=1.2e-05 Score=73.26 Aligned_cols=87 Identities=22% Similarity=0.273 Sum_probs=61.7
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHHHHHHhCCCceEEEeChhHHHHHHH
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIE 304 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~ 304 (515)
++.+++|||+||++++.++.+.. .++.++++.+.. ..|.+.++++++.+| ++..+...
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~~----------~~v~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~--------- 60 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKEG----------YEVHALSFDYGQRHAKEEEAAKLIAEKLG-PSTYVPAR--------- 60 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHcC----------CcEEEEEEECCCCChhHHHHHHHHHHHHC-CCEEEeCc---------
Confidence 46789999999999999988653 467788876532 346789999999999 33322110
Q ss_pred HHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCcccc
Q 010213 305 EVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 305 ~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDel 348 (515)
.....-.+.+.|.+.|++.+++|+..|+.
T Consensus 61 ---------------~~~~~~~l~~~a~~~g~~~i~~G~~~~d~ 89 (169)
T cd01995 61 ---------------NLIFLSIAAAYAEALGAEAIIIGVNAEDY 89 (169)
T ss_pred ---------------CHHHHHHHHHHHHHCCCCEEEEeeccCcc
Confidence 01111234566778899999999999885
No 104
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=1.1e-05 Score=69.91 Aligned_cols=62 Identities=32% Similarity=0.334 Sum_probs=51.5
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHHHhCCCceEEEeChhH
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQD 298 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~ 298 (515)
.+++++|||-|||+-|.++.+.+ ..+...|+.|.--+..++|++.|+.+|.+|..+.++.+-
T Consensus 2 ~v~vLfSGGKDSSLaA~iL~klg----------yev~LVTvnFGv~d~~k~A~~tA~~lgF~h~vl~Ldr~i 63 (198)
T COG2117 2 DVYVLFSGGKDSSLAALILDKLG----------YEVELVTVNFGVLDSWKYARETAAILGFPHEVLQLDREI 63 (198)
T ss_pred ceEEEecCCCchhHHHHHHHHhC----------CCcEEEEEEeccccchhhHHHHHHHhCCCcceeccCHHH
Confidence 47899999999999999998874 456666666656688999999999999999999886543
No 105
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=98.09 E-value=1.3e-05 Score=72.60 Aligned_cols=115 Identities=18% Similarity=0.140 Sum_probs=68.2
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeec--CCCChHHHHHHHHHHhCCCceEEEeChhHHHHHHH
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL--EGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIE 304 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~--~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~ 304 (515)
++.+.+|||.||++++.++.+..... .++..+++.. ......++++++++.+|++++.+......... ..
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-------~~~~~v~~dtg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~ 72 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-------KPVPVIFLDTGYEFPETYEFVDRVAERYGLPLVVVRPPDSPAEG-LA 72 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-------cCceEEEeCCCCCCHHHHHHHHHHHHHhCCCeEEECCCccHHHH-HH
Confidence 47899999999999999998865210 1566666543 22235678999999999998887654322111 00
Q ss_pred HHHHhhccCCCCcccch---HHHHHHHHHHHhCCCeEEEeccCcccccc
Q 010213 305 EVIYHVETYDVTTIRAS---TPMFLMSRKIKSLGVKMVISGEGSDEIFG 350 (515)
Q Consensus 305 ~~~~~~e~~~~~~~~~~---~~~~~l~~~a~~~g~~vlltG~GgDelf~ 350 (515)
..... ..+.....+.. .-.-.+.+.+++.+..++++|.-+||...
T Consensus 73 ~~~~~-~~~~~~~~~~c~~~~K~~~~~~~~~~~~~~~~~~G~r~de~~~ 120 (173)
T cd01713 73 LGLKG-FPLPSPDRRWCCRILKVEPLRRALKELGVVAWITGIRRDESAR 120 (173)
T ss_pred Hhhhc-cCCccccHHHhhccccchHHHHHHHhcCCeEEEEEeccccchh
Confidence 11110 11110000000 00113345556678999999999999643
No 106
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=98.08 E-value=2.6e-05 Score=72.42 Aligned_cols=92 Identities=18% Similarity=0.169 Sum_probs=61.6
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--------CChHHHHHHHHHHhCCCceEEEeChhH
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--------SPDLKYAKEVADYLGTVHHEFHFTVQD 298 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--------~~d~~~A~~va~~lg~~~~~~~~~~~~ 298 (515)
++.+++|||.||++.+.++.+.. .++.++++..+. ..+.+.++++|+.+|++|+.+.++...
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~G----------~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~~~~~ 70 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEEG----------HEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEISGEE 70 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHcC----------CEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeCCCCc
Confidence 36789999999999999988753 456655543221 137789999999999999988764311
Q ss_pred HHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccc
Q 010213 299 GIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (515)
Q Consensus 299 ~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDe 347 (515)
-+.. ..++...+.+++.|++++++|.-.++
T Consensus 71 -e~~~------------------~~l~~~l~~~~~~g~~~vv~G~i~sd 100 (194)
T cd01994 71 -EDEV------------------EDLKELLRKLKEEGVDAVVFGAILSE 100 (194)
T ss_pred -hHHH------------------HHHHHHHHHHHHcCCCEEEECccccH
Confidence 1111 11222223333348999999988876
No 107
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=98.05 E-value=5.1e-05 Score=73.35 Aligned_cols=140 Identities=21% Similarity=0.236 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHhhcc--ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC--CCChHHHHHHHHH
Q 010213 208 LVLRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVAD 283 (515)
Q Consensus 208 ~~l~~~l~~aV~~rl~~--~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~--~~~d~~~A~~va~ 283 (515)
++..+.+..-++.++.. ...+.+-+|||+||+++++++.+.+.+. +....+.++.+.+. ...+...|..+++
T Consensus 6 ~~~~~~~~~fl~~~l~~~~~k~~VlGiSGGiDSa~~~~La~~A~~~~----~~~~~~~av~mP~~~~~~~~~~da~~~~~ 81 (268)
T COG0171 6 EEEINRLVDFLRDYLKKAGFKGVVLGLSGGIDSALVLALAVRALGKG----DSKENVLAVRLPYGYTVQADEEDAQDLAE 81 (268)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCeEEEcccChHHHHHHHHHHHHhccc----cchhheeeEECCCCCccccCHHHHHHHHH
Confidence 34444555555555542 2346677999999999999999887420 00023777777665 4467889999999
Q ss_pred HhCCCceEEEeChhHHHHHH-HHHHHhh-----ccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 010213 284 YLGTVHHEFHFTVQDGIDAI-EEVIYHV-----ETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (515)
Q Consensus 284 ~lg~~~~~~~~~~~~~~~~l-~~~~~~~-----e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~ 354 (515)
.+|++..++++++ ..+.+ ..+.... +.....++.+...+-.++..|.+.|.-|+=|| ..+|+.-||-.
T Consensus 82 ~lg~~~~~i~I~~--~v~~~~~~~~~~~~~~~~~~~~~~NikaR~Rm~~lY~~An~~~~lVlGTg-n~sE~~~Gy~T 155 (268)
T COG0171 82 ALGIDYKEINIKP--AVDAFLKKLLKLFLGIYLEDLALGNIKARLRMVILYAIANKLGGLVLGTG-NKSELALGYFT 155 (268)
T ss_pred HhCCceEEEecHH--HHHHHHHhhhhhhcccchhhHHHhhhhHHHHHHHHHHHHhhcCCEEEcCC-cHHHHhcCcee
Confidence 9999977776653 33332 2211111 11111122333455566666777776566565 45688888865
No 108
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=98.04 E-value=3.1e-05 Score=73.41 Aligned_cols=89 Identities=19% Similarity=0.237 Sum_probs=59.3
Q ss_pred EeecCCcchHHHHHHHHHHhccccccccCCCcee-eEEeecC-------CCChHHHHHHHHHHhCCCceEEEeChhHHHH
Q 010213 230 VLLSGGLDSSLVASITARHLAGTKAARQWGTQLH-SFCVGLE-------GSPDLKYAKEVADYLGTVHHEFHFTVQDGID 301 (515)
Q Consensus 230 v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~-~~t~~~~-------~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~ 301 (515)
+++|||+||++.+..+.+.. .++. .+++..+ ...+.+.++++|+.+|++|+.+.++... ..
T Consensus 2 vl~SGGkDS~~al~~a~~~G----------~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~~~i~~~~~~-~~ 70 (218)
T TIGR03679 2 ALYSGGKDSNYALYKALEEG----------HEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPLVKIETSGEK-EK 70 (218)
T ss_pred eeecCcHHHHHHHHHHHHcC----------CEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCEEEEECCCCC-hH
Confidence 68999999999999888743 4553 3344222 1347899999999999999988875210 00
Q ss_pred HHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccc
Q 010213 302 AIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (515)
Q Consensus 302 ~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDe 347 (515)
..+ .++...+.+++.|++.+++|.-.++
T Consensus 71 ~~~------------------~l~~~l~~~~~~g~~~vv~G~i~sd 98 (218)
T TIGR03679 71 EVE------------------DLKGALKELKREGVEGIVTGAIASR 98 (218)
T ss_pred HHH------------------HHHHHHHHHHHcCCCEEEECCcccH
Confidence 000 0233334455559999999987763
No 109
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=98.03 E-value=2.7e-05 Score=82.68 Aligned_cols=111 Identities=18% Similarity=0.269 Sum_probs=68.7
Q ss_pred cccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCC----ChHHHHHHHHHHhCCCce--EEEeChh
Q 010213 224 TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS----PDLKYAKEVADYLGTVHH--EFHFTVQ 297 (515)
Q Consensus 224 ~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~----~d~~~A~~va~~lg~~~~--~~~~~~~ 297 (515)
+.+++.++||||+||++.++++.+.. ..+.++++.+... .+.+.++.++++++.+|. .+.++-.
T Consensus 176 ~~gk~lvllSGGiDS~va~~~~~krG----------~~v~~l~f~~g~~~~~~~~~~~a~~l~~~~~~~~~~~l~~v~~~ 245 (482)
T PRK01269 176 TQEDVLSLISGGFDSGVASYMLMRRG----------SRVHYCFFNLGGAAHEIGVKQVAHYLWNRYGSSHRVRFISVDFE 245 (482)
T ss_pred ccCeEEEEEcCCchHHHHHHHHHHcC----------CEEEEEEEecCCchhHHHHHHHHHHHHHHhCccCCceEEEEecH
Confidence 45678899999999999999887753 5777777754332 257889999988886554 3334322
Q ss_pred HHHHHHHHHHHhhccCCCCc-ccchHHHHHHHHHHHhCCCeEEEeccCcccc
Q 010213 298 DGIDAIEEVIYHVETYDVTT-IRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 298 ~~~~~l~~~~~~~e~~~~~~-~~~~~~~~~l~~~a~~~g~~vlltG~GgDel 348 (515)
+... .+..... ..... +.....+-.+.+.|.+.|++.++||+..|++
T Consensus 246 ~~~~---~i~~~~~-~~~~~~v~rR~ml~iA~~~A~~~ga~~IvtG~~l~dv 293 (482)
T PRK01269 246 PVVG---EILEKVD-DGQMGVVLKRMMLRAASKVAERYGIQALVTGEALGQV 293 (482)
T ss_pred HHHH---HHHhcCC-CceecHHHHHHHHHHHHHHHHHcCCCEEEECcChHhh
Confidence 2222 2221111 11111 1111111123567788999999999998875
No 110
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=98.00 E-value=7.8e-05 Score=73.81 Aligned_cols=108 Identities=16% Similarity=0.161 Sum_probs=68.3
Q ss_pred cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC-CCh-HHHHHHHHHHhCCCceEEEeChhHHHHHH
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-SPD-LKYAKEVADYLGTVHHEFHFTVQDGIDAI 303 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~-~~d-~~~A~~va~~lg~~~~~~~~~~~~~~~~l 303 (515)
.++++++|||.||++++.++.+..... ..++..+++.... .+| .+++.++++.+|++++++... +.+
T Consensus 28 ~~~vv~~SGGKDS~VLL~La~ka~~~~------~~~~~vl~iDTG~~FpEt~ef~d~~a~~~gl~l~v~~~~--~~i--- 96 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLARKAFYPG------KLPFPLLHVDTGWKFPEMIEFRDRRAKELGLELIVHSNP--EGI--- 96 (301)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhccc------CCCeeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEeCh--HHH---
Confidence 468899999999999999998875321 1356666664322 233 578999999999998776432 211
Q ss_pred HHHHHhhccCCCC--cccchHHHHHHHHHHHhCCCeEEEeccCccc
Q 010213 304 EEVIYHVETYDVT--TIRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (515)
Q Consensus 304 ~~~~~~~e~~~~~--~~~~~~~~~~l~~~a~~~g~~vlltG~GgDe 347 (515)
......+... ..+...-...+.+.+++.|++++++|.-.||
T Consensus 97 ---~~g~~~~~~~~~~cC~~lK~~pL~~al~e~g~da~~~G~RrDE 139 (301)
T PRK05253 97 ---ARGINPFRHGSAKHTNAMKTEGLKQALEKYGFDAAFGGARRDE 139 (301)
T ss_pred ---hcCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEEeccccch
Confidence 1111111110 0111112234556777889999999999998
No 111
>COG0121 Predicted glutamine amidotransferase [General function prediction only]
Probab=97.97 E-value=0.00023 Score=68.34 Aligned_cols=42 Identities=24% Similarity=0.337 Sum_probs=34.4
Q ss_pred CEEEEEeeeeecCCC--CCCCceeeC--CCcEEEEEeeEEcChHHH
Q 010213 43 DFYLAHQRLAIIDPA--SGDQPLYNE--DKKIVVTVNGEIYNHEAL 84 (515)
Q Consensus 43 ~~~l~h~rl~~~~~~--~~~qP~~~~--~~~~~~~~nGei~n~~~L 84 (515)
.++++|.|.|+.|.- .++|||..+ ...+.++|||.|.+++.+
T Consensus 71 ~~viaHvR~At~G~vs~~ntHPF~~~~~~~~~~FaHNG~l~~~~~~ 116 (252)
T COG0121 71 ELVIAHVRKATQGEVSLSNTHPFTRELWGYIWLFAHNGQLDKFKLL 116 (252)
T ss_pred cEEEEEEeccCCCcccccCCCCccccCCccceEEEecCcccCcccc
Confidence 478999999999842 589999865 345799999999999874
No 112
>PRK08576 hypothetical protein; Provisional
Probab=97.89 E-value=0.00011 Score=76.12 Aligned_cols=121 Identities=21% Similarity=0.199 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHhhcccc--ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC--CCChHHHHHHHHHHh
Q 010213 210 LRQAFENAVIKRLMTDV--PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYL 285 (515)
Q Consensus 210 l~~~l~~aV~~rl~~~~--~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~--~~~d~~~A~~va~~l 285 (515)
+-+.+++.+.+.++... ++.+.+|||.||++++.++.+.. .++.++++... .....++++++++.+
T Consensus 217 ~le~~e~~~~~~Lr~~~~~rVvVafSGGKDStvLL~La~k~~----------~~V~aV~iDTG~e~pet~e~~~~lae~L 286 (438)
T PRK08576 217 VLEAFEKASIKFLRKFEEWTVIVPWSGGKDSTAALLLAKKAF----------GDVTAVYVDTGYEMPLTDEYVEKVAEKL 286 (438)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEEcChHHHHHHHHHHHHhC----------CCCEEEEeCCCCCChHHHHHHHHHHHHc
Confidence 44445555444444333 79999999999999999988865 24667766432 223578899999999
Q ss_pred CCCceEEEeChhHHHHHHHHHHHhhccCCCC-cccchHHHHHHHHHHHhCCCeEEEeccCccc
Q 010213 286 GTVHHEFHFTVQDGIDAIEEVIYHVETYDVT-TIRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (515)
Q Consensus 286 g~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~-~~~~~~~~~~l~~~a~~~g~~vlltG~GgDe 347 (515)
|++++...++... .... ...+... ..+...-...+.+.+++.|++++++|+-.||
T Consensus 287 GI~lii~~v~~~~---~~~~----~g~p~~~~rcCt~lK~~pL~raake~g~~~iatG~R~dE 342 (438)
T PRK08576 287 GVDLIRAGVDVPM---PIEK----YGMPTHSNRWCTKLKVEALEEAIRELEDGLLVVGDRDGE 342 (438)
T ss_pred CCCEEEcccCHHH---Hhhh----cCCCCcccchhhHHHHHHHHHHHHhCCCCEEEEEeeHHH
Confidence 9988762222111 1110 1111111 1111111224556677789999999987666
No 113
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=97.84 E-value=5.3e-05 Score=70.04 Aligned_cols=110 Identities=17% Similarity=0.256 Sum_probs=53.9
Q ss_pred ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEee---cCCCChHHHHHHHHHHhCC-----CceEEEeCh
Q 010213 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG---LEGSPDLKYAKEVADYLGT-----VHHEFHFTV 296 (515)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~---~~~~~d~~~A~~va~~lg~-----~~~~~~~~~ 296 (515)
.+++-++||||+||.+-+.++.+.+ -.+.++++. +.+......++++++.+.. ....+.++-
T Consensus 3 ~gk~l~LlSGGiDSpVAa~lm~krG----------~~V~~l~f~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~l~~v~~ 72 (197)
T PF02568_consen 3 QGKALALLSGGIDSPVAAWLMMKRG----------CEVIALHFDSPPFTGEKAREKVEELAEKLSEYSPGHKIRLYVVDF 72 (197)
T ss_dssp T-EEEEE-SSCCHHHHHHHHHHCBT-----------EEEEEEEE-TTTSSCCCHHHHHHHHHHHHCCSTTS-EEEEEECH
T ss_pred CceEEEEecCCccHHHHHHHHHHCC----------CEEEEEEEECCCCCCHHHHHHHHHHHHHHHHhCCCcceeEEEECc
Confidence 4577899999999999988888753 567666664 2233344556666665532 233333433
Q ss_pred hHHHHHHHHHHHhhccCCCCcccchHHHHHH-HHHHHhCCCeEEEeccCcccc
Q 010213 297 QDGIDAIEEVIYHVETYDVTTIRASTPMFLM-SRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 297 ~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l-~~~a~~~g~~vlltG~GgDel 348 (515)
.+... ++...... ..+++..-..|+.. .+.|.+.|++.++||+---++
T Consensus 73 ~~~~~---~i~~~~~~-~~~ci~ckr~M~r~A~~ia~~~ga~~IvTGEsLGQv 121 (197)
T PF02568_consen 73 TEVQK---EILRGVKE-RNPCIDCKRFMYRIAEEIAEEEGADAIVTGESLGQV 121 (197)
T ss_dssp HHHHH---HHHHHS-G-GGHHHHHHHHHHHHHHHHHHHTT--EEE----SSST
T ss_pred HHHHH---HHHhcCCc-cchhHHHHHHHHHHHHHHHHHCCCCEEEeCchhHHH
Confidence 33332 22222211 11122222233433 356778999999999765443
No 114
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=97.82 E-value=9.9e-05 Score=74.90 Aligned_cols=108 Identities=23% Similarity=0.292 Sum_probs=65.7
Q ss_pred EeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCC-ChHHHHHHHHHHhCC-CceEEEeChhHHH-HHHHHH
Q 010213 230 VLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS-PDLKYAKEVADYLGT-VHHEFHFTVQDGI-DAIEEV 306 (515)
Q Consensus 230 v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~-~d~~~A~~va~~lg~-~~~~~~~~~~~~~-~~l~~~ 306 (515)
+++|||||||+++..+.+.. +.+++||++..-.. .|...+++-|..+|. +++.+.... ++. +.+-..
T Consensus 2 LAySGGLDTS~~l~~L~e~~---------~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r~-ef~~~~i~~a 71 (388)
T PF00764_consen 2 LAYSGGLDTSVILKWLKEEG---------GYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDARD-EFAEDYIFPA 71 (388)
T ss_dssp EE--SSHHHHHHHHHHHHTT---------TEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-HH-HHHHHTHHHH
T ss_pred eeeCCChHHHHHHHHHHhhc---------CceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchHH-HHHHHHHHHH
Confidence 67999999999998888764 25899999877555 688899999999998 788877644 344 333344
Q ss_pred HHhhc----cCCCCcccchHHH--HHHHHHHHhCCCeEEE---eccCcccc
Q 010213 307 IYHVE----TYDVTTIRASTPM--FLMSRKIKSLGVKMVI---SGEGSDEI 348 (515)
Q Consensus 307 ~~~~e----~~~~~~~~~~~~~--~~l~~~a~~~g~~vll---tG~GgDel 348 (515)
+.... .+... -..+.|. -.+.+.|++.|++++. ||-|-|++
T Consensus 72 I~anA~Yeg~YpL~-tsl~RplIa~~~v~~A~~~ga~~vaHG~TgkGNDqv 121 (388)
T PF00764_consen 72 IKANALYEGRYPLS-TSLARPLIAKKLVEVAREEGADAVAHGCTGKGNDQV 121 (388)
T ss_dssp HHTT--BTTTB--C-CCCHHHHHHHHHHHHHHHHT-SEEE----TTSSHHH
T ss_pred HHHHHHhCCCcccc-ccchHHHHHHHHHHHHHHcCCeEEeccCCcCCCchh
Confidence 43221 22211 1112222 2345778888999886 56666764
No 115
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=97.81 E-value=0.00014 Score=66.15 Aligned_cols=123 Identities=22% Similarity=0.198 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhhcc----------ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC---CCh-
Q 010213 209 VLRQAFENAVIKRLMT----------DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG---SPD- 274 (515)
Q Consensus 209 ~l~~~l~~aV~~rl~~----------~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~---~~d- 274 (515)
+..+.+.+.+..|+.. +.+++|++|||.|||+.+-++.... +++.... .+.
T Consensus 34 e~~~rl~e~l~~RL~g~~ef~r~~id~~kiaVA~SGG~DSsas~iilR~~g---------------~~v~p~t~~Lp~~i 98 (255)
T COG1365 34 EVYERLRELLKKRLEGEKEFERIKIDKPKIAVAYSGGVDSSASAIILRWAG---------------FTVDPGTAILPDHI 98 (255)
T ss_pred HHHHHHHHHHHHHhcCchhcccCCCCCceEEEEecCCcchHHHHHHHHhhc---------------eeeccccccCCHHH
Confidence 3556667777777743 2678999999999999888887643 3332111 123
Q ss_pred HHHHHHHHHHhCCCceEEEeChhHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 010213 275 LKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (515)
Q Consensus 275 ~~~A~~va~~lg~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~ 354 (515)
+..+...+..+|..+..+..+ ...+.+-.- ...+.++.-+++........++++.+++++.+|++ |=.||..
T Consensus 99 r~n~~~l~~~lg~~p~yveed----l~~i~kGal-nGRfhpCGRCh~~I~~~V~~k~re~di~~vafGDl---Ls~G~~s 170 (255)
T COG1365 99 RRNKEELETLLGEVPEYVEED----LEDIEKGAL-NGRFHPCGRCHSMIENAVMDKARELDIDVVAFGDL---LSTGYGS 170 (255)
T ss_pred hHHHHHHHHHHccCHHHHHHH----HHHHHhhhc-cCCCCCcchHHHHHHHHHHHHHHhcCCeEEEEccc---ccccccc
Confidence 345778889999876543221 222222110 12233333334555567788899999999999954 4567754
No 116
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=97.80 E-value=0.00013 Score=76.50 Aligned_cols=77 Identities=18% Similarity=0.167 Sum_probs=55.3
Q ss_pred HHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC--C-CC-hHHHHHHHHHHhCCCce
Q 010213 215 ENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--G-SP-DLKYAKEVADYLGTVHH 290 (515)
Q Consensus 215 ~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~--~-~~-d~~~A~~va~~lg~~~~ 290 (515)
...+...+....++.+++|||.||++++.++.+..... .+.++.++++... . ++ +..+++.+|+.+|++++
T Consensus 5 ~~~l~~~l~~~~~ilvavSGG~DS~~Ll~~l~~~~~~~-----~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~~~ 79 (436)
T PRK10660 5 TLTLNRQLLTSRQILVAFSGGLDSTVLLHLLVQWRTEN-----PGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVPLV 79 (436)
T ss_pred HHHHHHhcCCCCeEEEEecCCHHHHHHHHHHHHHHHhc-----CCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCcEE
Confidence 34455566677889999999999999999987643110 1246777777542 2 22 35788999999999999
Q ss_pred EEEeCh
Q 010213 291 EFHFTV 296 (515)
Q Consensus 291 ~~~~~~ 296 (515)
...++.
T Consensus 80 ~~~~~~ 85 (436)
T PRK10660 80 VERVQL 85 (436)
T ss_pred EEEEec
Confidence 887653
No 117
>PRK05370 argininosuccinate synthase; Validated
Probab=97.68 E-value=0.00046 Score=70.59 Aligned_cols=117 Identities=17% Similarity=0.104 Sum_probs=76.5
Q ss_pred hhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHHHHHHhCC-CceEEEeChh
Q 010213 221 RLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGT-VHHEFHFTVQ 297 (515)
Q Consensus 221 rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~va~~lg~-~~~~~~~~~~ 297 (515)
.|....+|+++.|||||||+++..+.+.. ..++||++..-. ..|.+.+++-|..+|. ++..+....
T Consensus 7 ~l~~~~KVvLAYSGGLDTSv~l~wL~e~~----------~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDlr~- 75 (447)
T PRK05370 7 HLPVGQRVGIAFSGGLDTSAALLWMRQKG----------AVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRA- 75 (447)
T ss_pred hCCCCCEEEEEecCCchHHHHHHHHHhcC----------CeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEeccHH-
Confidence 35556689999999999999998877642 579999986644 5788899999999999 466666543
Q ss_pred HHHHHHHHHHHhhcc--------CCC-CcccchHHHHHHHHHHHhCCCeEEE---eccCcccc
Q 010213 298 DGIDAIEEVIYHVET--------YDV-TTIRASTPMFLMSRKIKSLGVKMVI---SGEGSDEI 348 (515)
Q Consensus 298 ~~~~~l~~~~~~~e~--------~~~-~~~~~~~~~~~l~~~a~~~g~~vll---tG~GgDel 348 (515)
++.+..-..+..... +.. ..+...+..-.+.+.|++.|++++. ||-|-|++
T Consensus 76 eF~e~~i~aI~anA~Y~~~~e~~Y~l~t~LaRplia~~lv~~A~~~ga~aIAHG~TGKGNDQv 138 (447)
T PRK05370 76 QLVAEGIAAIQCGAFHISTGGVTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIE 138 (447)
T ss_pred HHHHHHHHHHHcCCccccccCccccCCCcchHHHHHHHHHHHHHHhCCcEEEEcCCCCCCchH
Confidence 444332244442221 211 1111111223456778899999886 56667765
No 118
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=97.52 E-value=0.0009 Score=74.17 Aligned_cols=89 Identities=25% Similarity=0.222 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHhhccc--cceEEeecCCcchHHHHHHH-------HHHhcc--ccc----------cccCC-------
Q 010213 208 LVLRQAFENAVIKRLMTD--VPFGVLLSGGLDSSLVASIT-------ARHLAG--TKA----------ARQWG------- 259 (515)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~--~~v~v~LSGGlDSs~iaa~a-------~~~~~~--~~~----------~~~~~------- 259 (515)
+++.......++.+++.. ..+.+.||||+||+++|+++ .+.+.. .++ .+.+-
T Consensus 329 ~ei~~~~~~~L~d~l~~~g~~g~vlglSGGiDSa~~a~lv~~~~~~~~~a~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 408 (700)
T PLN02339 329 EEIALGPACWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGSMCQLVVKAIREGDEQVKADARRIGNYADGEVPTDSKEF 408 (700)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhccccccccccchhhh
Confidence 566666666677776533 45678899999999988885 333311 100 00000
Q ss_pred --CceeeEEeecCCCC--hHHHHHHHHHHhCCCceEEEeCh
Q 010213 260 --TQLHSFCVGLEGSP--DLKYAKEVADYLGTVHHEFHFTV 296 (515)
Q Consensus 260 --~~i~~~t~~~~~~~--d~~~A~~va~~lg~~~~~~~~~~ 296 (515)
..+++++++...++ ....|+++|+.+|+.|+++.+++
T Consensus 409 ~~~~~~~v~mp~~~ss~~t~~~A~~la~~lG~~~~~i~I~~ 449 (700)
T PLN02339 409 AKRIFYTVYMGSENSSEETRSRAKQLADEIGSSHLDVKIDG 449 (700)
T ss_pred hcceeEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEeCHH
Confidence 11567777655443 45789999999999999988864
No 119
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=97.47 E-value=0.0017 Score=64.69 Aligned_cols=114 Identities=23% Similarity=0.228 Sum_probs=74.3
Q ss_pred ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC-CChHHHHHHHHHHhCCC-ceEEEeChhHHHHH
Q 010213 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-SPDLKYAKEVADYLGTV-HHEFHFTVQDGIDA 302 (515)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~-~~d~~~A~~va~~lg~~-~~~~~~~~~~~~~~ 302 (515)
..+|+++.|||||+|++.-.+.+.. +..+.|||+..-. .+|.+.+++-|..+|.. |..+...++-.-+.
T Consensus 4 ~kkvvLAYSGGLDTSv~i~wL~e~~---------~~eVia~tadvGQ~eed~~~i~eKA~~~Ga~~~~viD~reeF~~~y 74 (403)
T COG0137 4 VKKVVLAYSGGLDTSVAIKWLKEKG---------GAEVIAVTADVGQPEEDLDAIREKALELGAEEAYVIDAREEFVEDY 74 (403)
T ss_pred CcEEEEEecCCccHHHHHHHHHHhc---------CceEEEEEEeCCCChHHhHHHHHHHHHhCCceEEEeecHHHHHHHH
Confidence 3578899999999999998888765 3578999987655 48999999999999987 66666544322233
Q ss_pred HHHHHHhh---cc-CCCCcccchHHH--HHHHHHHHhCCCeEEE---eccCcccc
Q 010213 303 IEEVIYHV---ET-YDVTTIRASTPM--FLMSRKIKSLGVKMVI---SGEGSDEI 348 (515)
Q Consensus 303 l~~~~~~~---e~-~~~~~~~~~~~~--~~l~~~a~~~g~~vll---tG~GgDel 348 (515)
+-..+... |. +...+ ..+.|+ -.+.+.|++.|+..+- ||-|-|.+
T Consensus 75 i~~~i~ana~Yeg~YpL~T-alaRPLIak~lVe~A~k~ga~avaHGcTGKGNDQv 128 (403)
T COG0137 75 IFPAIKANALYEGVYPLGT-ALARPLIAKKLVEAAKKEGADAVAHGCTGKGNDQV 128 (403)
T ss_pred HHHHHHhhceeeccccccc-hhhHHHHHHHHHHHHHHcCCCEEEecCCCCCCcee
Confidence 33333222 22 22211 112222 2344667888887764 67777876
No 120
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=97.38 E-value=0.00017 Score=77.58 Aligned_cols=93 Identities=24% Similarity=0.232 Sum_probs=80.2
Q ss_pred ccccccCceeccCCCCHHHHHHHHcCCccccccCCCCCcchhHHHHHhhccCCCCCCChhhhhcccCCCCCCCchhhHH-
Q 010213 385 KSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWID- 463 (515)
Q Consensus 385 ~~~~~~g~e~r~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~lLR~a~~~~~~~~lP~~i~~R~K~~f~~~~~~~~~~- 463 (515)
+ +|+.+++.|.||+|. ++++.+||.+.|...+. +|.++|.+.+. .+|+.+..|+|.+|+.+.. .|..
T Consensus 419 ~-~m~~~le~Rvpf~~~--~~l~~~i~~~~K~~~~~----gk~~lr~~~~~----~~p~~~~~r~k~~~~~~~~-~~~~~ 486 (542)
T COG0367 419 R-SMAKKLERRVPFSDG--VELPEEIPWREKIAFGY----GKGILRIAYEK----ILPDFILSRKKLGFPKPLW-GRYYE 486 (542)
T ss_pred h-hhhhhhheecccccc--hhhHhhCChhhhhhcCC----cchhhHhhhhc----cCcHHHhcccccCCCcccc-ccccc
Confidence 7 899999999999999 99999999999998754 79999999999 9999999999999999965 4543
Q ss_pred -HHHHHHHHhcChHHHHhcCccCCCCC
Q 010213 464 -GLKAHAEQHVTDKMVQNAQYIFPHNT 489 (515)
Q Consensus 464 -~~~~~~~~~l~~~~l~~~g~~~~~~~ 489 (515)
...+++.+++.++.....++++...+
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~v 513 (542)
T COG0367 487 NSLLLWLYRLIEEEFSPEYPLVDLALV 513 (542)
T ss_pred chHHHHHHHHHhhhcccccchhhhHHH
Confidence 35788888888887777778776543
No 121
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=97.35 E-value=0.0014 Score=64.41 Aligned_cols=120 Identities=11% Similarity=0.063 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC-CCh-HHHHHHHHHHhCCC
Q 010213 211 RQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-SPD-LKYAKEVADYLGTV 288 (515)
Q Consensus 211 ~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~-~~d-~~~A~~va~~lg~~ 288 (515)
.+.|+.++... ....+++|||.||++++.++.+..... ..++..+++...- .+| .++..++++.+|++
T Consensus 9 i~ilRe~~~~f----~~~vv~~SGGKDS~VlLhLa~kaf~~~------~~p~~vl~IDTG~~F~Et~efrd~~a~~~gl~ 78 (294)
T TIGR02039 9 IHIIREVAAEF----ERPVMLYSIGKDSSVLLHLARKAFYPG------PLPFPLLHVDTGWKFREMIAFRDHMVAKYGLR 78 (294)
T ss_pred HHHHHHHHHhc----CCcEEEEecChHHHHHHHHHHHHhccc------CCCeEEEEEecCCCCHHHHHHHHHHHHHhCCC
Confidence 34454444432 234688999999999999999876321 1356677764321 244 36788999999999
Q ss_pred ceEEEeChhHHHHHHHHHHHhhccCCC--CcccchHHHHHHHHHHHhCCCeEEEeccCcccc
Q 010213 289 HHEFHFTVQDGIDAIEEVIYHVETYDV--TTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 289 ~~~~~~~~~~~~~~l~~~~~~~e~~~~--~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDel 348 (515)
++++... +... +....+.. ...+...-...+.+.+.+.|.+++++|.--||-
T Consensus 79 l~v~~~~--~~~~------~g~~~~~~~~~~~c~vlK~~pL~~al~e~g~da~itG~RRDEe 132 (294)
T TIGR02039 79 LIVHSNE--EGIA------DGINPFTEGSALHTDIMKTEALRQALDKNQFDAAFGGARRDEE 132 (294)
T ss_pred EEEEech--hhhh------cCccccccChHHHhhHHHHHHHHHHHHHcCCCEEEecCChhhh
Confidence 8776542 2111 11111110 001112223456666777899999999998884
No 122
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=97.30 E-value=0.00091 Score=64.52 Aligned_cols=71 Identities=8% Similarity=0.063 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEee--cCCCChHHHHHHHHHHhCCCc
Q 010213 212 QAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEGSPDLKYAKEVADYLGTVH 289 (515)
Q Consensus 212 ~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~--~~~~~d~~~A~~va~~lg~~~ 289 (515)
+.++.+++.. +.++.+.+|||.||++++.++.+.. .++..+.+. .....-.++++++++++|+++
T Consensus 30 e~i~~a~~~~---~~~i~vs~SGGKDS~vlL~L~~~~~----------~~i~vvfiDTG~~~pet~e~~~~~~~~~gl~l 96 (241)
T PRK02090 30 ERLAWALENF---GGRLALVSSFGAEDAVLLHLVAQVD----------PDIPVIFLDTGYLFPETYRFIDELTERLLLNL 96 (241)
T ss_pred HHHHHHHHHc---CCCEEEEecCCHHHHHHHHHHHhcC----------CCCcEEEecCCCCCHHHHHHHHHHHHHhCCCE
Confidence 3444444432 2358999999999999999998853 456666653 322223578899999999998
Q ss_pred eEEEeC
Q 010213 290 HEFHFT 295 (515)
Q Consensus 290 ~~~~~~ 295 (515)
+++...
T Consensus 97 ~v~~~~ 102 (241)
T PRK02090 97 KVYRPD 102 (241)
T ss_pred EEECCC
Confidence 877643
No 123
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=97.27 E-value=0.0025 Score=60.70 Aligned_cols=76 Identities=24% Similarity=0.241 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEee--cCCCChHHHHHHH-HHH
Q 010213 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEGSPDLKYAKEV-ADY 284 (515)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~--~~~~~d~~~A~~v-a~~ 284 (515)
+.+.+...+.++.++. +.++-+.||||+|||+.+.++++.. |.+++|.-+. +-.-.|.+...++ .++
T Consensus 5 ~~~ie~~i~~ir~~vg-~~kvi~alSGGVDSsv~a~L~~~Ai---------Gd~l~cvfVD~GLlR~~E~e~V~~~f~~~ 74 (315)
T COG0519 5 ENFIEEAIEEIREQVG-DGKVILALSGGVDSSVAAVLAHRAI---------GDQLTCVFVDHGLLRKGEAEQVVEMFREH 74 (315)
T ss_pred HHHHHHHHHHHHHHhC-CceEEEEecCCCcHHHHHHHHHHHh---------hcceEEEEecCCcccCCcHHHHHHHHHhh
Confidence 3455555566666665 6778899999999999999999987 4567777653 2223565555444 456
Q ss_pred hCCCceEEE
Q 010213 285 LGTVHHEFH 293 (515)
Q Consensus 285 lg~~~~~~~ 293 (515)
+|++...+.
T Consensus 75 ~~~nl~~Vd 83 (315)
T COG0519 75 LGLNLIVVD 83 (315)
T ss_pred cCCceEEEc
Confidence 888866654
No 124
>PRK08557 hypothetical protein; Provisional
Probab=96.92 E-value=0.0095 Score=61.74 Aligned_cols=59 Identities=19% Similarity=0.316 Sum_probs=43.4
Q ss_pred ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC-CCCh-HHHHHHHHHHhCCCceEEE
Q 010213 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPD-LKYAKEVADYLGTVHHEFH 293 (515)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~-~~~d-~~~A~~va~~lg~~~~~~~ 293 (515)
..++.+.+|||.||++++.++.+.. .++..+++... ..+| .++++++++.+|++.+.+.
T Consensus 181 ~~~i~vsfSGGKDS~vlL~L~~~~~----------~~i~vvfvDTG~efpET~e~ve~v~~~ygl~i~v~~ 241 (417)
T PRK08557 181 GYAINASFSGGKDSSVSTLLAKEVI----------PDLEVIFIDTGLEYPETINYVKDFAKKYDLNLDTLD 241 (417)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHhC----------CCCEEEEEECCCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 3568899999999999999888764 34555555321 1233 4789999999999987764
No 125
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=96.83 E-value=0.0036 Score=56.83 Aligned_cols=106 Identities=17% Similarity=0.164 Sum_probs=54.4
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC-CCCh-HHHHHHHHHHhCCCceEEEeChhHHHHHHH
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPD-LKYAKEVADYLGTVHHEFHFTVQDGIDAIE 304 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~-~~~d-~~~A~~va~~lg~~~~~~~~~~~~~~~~l~ 304 (515)
++.+.+|||.||++++.++.+... ++..+.+... +.+| ..+++++++.+|++.+..... ......+.
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~----------~~~vv~~dtg~e~p~t~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~ 69 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGR----------KVPVVFIDTGYEFPETYEFVDELAKRYGIPIIVYRPP-ETFEQRFI 69 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHT----------TCEEEEEE-STB-HHHHHHHHHHHHHTTCEEEEEETT-SHHHHHHH
T ss_pred CeEEEecCCHHHHHHHHHHHHhcC----------CCcEEEEecCccCHHHHHHHHHHHhhhhhhhhhcccc-cchhhccc
Confidence 367899999999999999998763 3333333221 2234 478999999999985444332 22222221
Q ss_pred HHHHhhccCCCCcccc-hHH---HHHHHHHHHhCCCeEEEeccCcccc
Q 010213 305 EVIYHVETYDVTTIRA-STP---MFLMSRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 305 ~~~~~~e~~~~~~~~~-~~~---~~~l~~~a~~~g~~vlltG~GgDel 348 (515)
..-. +.. .... ... .--+.+..++.+..++++|.=+||=
T Consensus 70 ~~~~----~~~-~~~~~c~~~~K~~p~~~~~~~~~~~~~~~G~R~~Es 112 (174)
T PF01507_consen 70 LYGW----PSK-LWRWWCCSILKVKPLRRALKEYGKDVWIIGVRADES 112 (174)
T ss_dssp HHHH----STT-HHHHHHHHHHTHHHHHHHHHHTTESEEE----TTST
T ss_pred cccc----cch-hhhHHHHHHHHHHHHhhhhcchHHHHHHHHHHhhch
Confidence 1110 110 0000 000 1123344556677899999999884
No 126
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=96.80 E-value=0.0095 Score=60.38 Aligned_cols=110 Identities=21% Similarity=0.289 Sum_probs=58.4
Q ss_pred cccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC-CChH--HHHHHHH-HHhCCCceEEEeChhHH
Q 010213 224 TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-SPDL--KYAKEVA-DYLGTVHHEFHFTVQDG 299 (515)
Q Consensus 224 ~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~-~~d~--~~A~~va-~~lg~~~~~~~~~~~~~ 299 (515)
+.+++-++||||+||-+-+.++-+.+ .+++.+++..++ ..+. .-+..++ ..+.-.++.+.+-.-++
T Consensus 174 t~Gk~l~LlSGGIDSPVA~~l~mkRG----------~~v~~v~f~~~p~~~~~a~~k~~~l~~~~~~~~~~~~~~~~v~f 243 (383)
T COG0301 174 TQGKVLLLLSGGIDSPVAAWLMMKRG----------VEVIPVHFGNPPYTSEKAREKVVALALLRLTSYGGKVRLYVVPF 243 (383)
T ss_pred cCCcEEEEEeCCCChHHHHHHHHhcC----------CEEEEEEEcCCCCchHHHHHHHHHHHhhhhcccCCceEEEEEch
Confidence 45677899999999999998887653 577777764433 2332 2222333 33332222222211122
Q ss_pred HHHHHHHHHhh-ccCCCCcccchHHHHHHH-HHHHhCCCeEEEeccCc
Q 010213 300 IDAIEEVIYHV-ETYDVTTIRASTPMFLMS-RKIKSLGVKMVISGEGS 345 (515)
Q Consensus 300 ~~~l~~~~~~~-e~~~~~~~~~~~~~~~l~-~~a~~~g~~vlltG~Gg 345 (515)
.+...++.... +.+.. +-.-..||.++ +.|.+.|+..+.||+.-
T Consensus 244 ~~v~~~i~~~~~~~y~~--v~~rR~M~riA~~iae~~g~~aIvtGEsL 289 (383)
T COG0301 244 TEVQEEILEKVPESYRC--VLLKRMMYRIAEKLAEEFGAKAIVTGESL 289 (383)
T ss_pred HHHHHHHHhhcCcccee--hHHHHHHHHHHHHHHHHhCCeEEEecCcc
Confidence 22222332222 22221 11122345444 46778899999999754
No 127
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=96.80 E-value=0.011 Score=58.50 Aligned_cols=108 Identities=18% Similarity=0.173 Sum_probs=66.1
Q ss_pred cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC-CCh-HHHHHHHHHHhCCCceEEEeChhHHHHHH
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-SPD-LKYAKEVADYLGTVHHEFHFTVQDGIDAI 303 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~-~~d-~~~A~~va~~lg~~~~~~~~~~~~~~~~l 303 (515)
.++++++|||.||++++.++.+.+... ..++..+++.... .+| ..+..++++.+|+++++... ++.+.
T Consensus 38 ~~~~v~~SgGKDS~VlLhLa~kaf~~~------~~~~pvl~VDTG~~FpEt~efrD~~a~~~gl~Liv~~~--~~~~~-- 107 (312)
T PRK12563 38 SKPVMLYSIGKDSVVMLHLAMKAFRPT------RPPFPLLHVDTTWKFREMIDFRDRRAKELGLDLVVHHN--PDGIA-- 107 (312)
T ss_pred CCcEEEecCChHHHHHHHHHHHhhccc------CCCeeEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEecC--hHHHH--
Confidence 346789999999999999999875321 1456677764322 244 57888999999998776542 22111
Q ss_pred HHHHHhhccCCC--CcccchHHHHHHHHHHHhCCCeEEEeccCccc
Q 010213 304 EEVIYHVETYDV--TTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (515)
Q Consensus 304 ~~~~~~~e~~~~--~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDe 347 (515)
. ....+.. ...+...-...+.+.+.+.|.+++++|.--||
T Consensus 108 -~---G~~~~~~~~~~~c~~~Kv~pL~raL~~~g~da~itG~RRdE 149 (312)
T PRK12563 108 -R---GIVPFRHGSALHTDVAKTQGLKQALDHHGFDAAIGGARRDE 149 (312)
T ss_pred -h---CCCcccCCHHHHhhHHhHHHHHHHHHhcCCCEEEEecCHHH
Confidence 1 1111110 00111111234555566678999999988887
No 128
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=96.60 E-value=0.0087 Score=66.90 Aligned_cols=133 Identities=22% Similarity=0.208 Sum_probs=87.8
Q ss_pred CEEEEEeeeeecCCC--CCCCceeeCCCcEEEEEeeEEcChH----HH--HH----------Hh---cCCCccCCChHHH
Q 010213 43 DFYLAHQRLAIIDPA--SGDQPLYNEDKKIVVTVNGEIYNHE----AL--RE----------RL---TNHKFRTGSDCDV 101 (515)
Q Consensus 43 ~~~l~h~rl~~~~~~--~~~qP~~~~~~~~~~~~nGei~n~~----~L--~~----------~l---~~~~~~~~~D~e~ 101 (515)
.++|.|+|.++.+.. .-+||+. ++.|||||...+ -. |+ ++ ....-...||+.-
T Consensus 285 ~~AlvHsRFSTNTfPsWdrAQPmR------~l~HNGEINTlrGN~NwMraREg~mks~~~~~e~~kl~Pive~~~SDSa~ 358 (2142)
T KOG0399|consen 285 HFALVHSRFSTNTFPSWDRAQPMR------FLAHNGEINTLRGNKNWMRAREGVMKSAVFKDELNKLLPIVEEGGSDSAA 358 (2142)
T ss_pred cceeeeeccccCCCCCccccccch------hhhccCceeeeccchhHHHHHHHhhhcchhhhhhhhhcccccCCCCchhh
Confidence 478899999998744 3579985 699999996322 11 11 11 0111123456532
Q ss_pred ---HHHHHHHHH---------------------------------HhhhhccccceEEEEEECCCCEEEEEecCCCccee
Q 010213 102 ---IAHLYEEYG---------------------------------ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSL 145 (515)
Q Consensus 102 ---i~~~~~~~G---------------------------------~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pL 145 (515)
+++++.+-| .-.++..+|.--+.+-|. +.+-+.=||-|.||.
T Consensus 359 lDnv~ElLvrsG~rslpEAvM~mVPEA~~nd~~~~~e~k~fYd~~a~~MEpWDGPALl~FsDG--ry~GA~LDRNGLRP~ 436 (2142)
T KOG0399|consen 359 LDNVLELLVRSGGRSLPEAVMMMVPEAWQNDKNMDPEKKAFYDWAACQMEPWDGPALLTFSDG--RYCGAILDRNGLRPA 436 (2142)
T ss_pred hhHHHHHHHHhCCCCcHHHHHHhChHHHhcCCCCCHHHHHHHHHHhhcCCCCCCceEEEecCC--ceeeeeeccCCCcce
Confidence 444444444 113566789888888887 677888899999999
Q ss_pred EEEEecCcEEEEEcCcccccccCCcc---eEeCCCeEEEec
Q 010213 146 YIGWGLDGSIWISSELKGLNDDCEHF---EAFPPGHLYSSK 183 (515)
Q Consensus 146 yy~~~~~~~~~faSe~~~l~~~~~~i---~~l~pG~~~~~~ 183 (515)
-|+.+.|+.++.|||+-.+--....| -+|.||.++.++
T Consensus 437 Ryy~Tsdd~v~~ASEVGvv~i~~~kVv~KgRL~PG~MllVD 477 (2142)
T KOG0399|consen 437 RYYITSDDRVICASEVGVVPIPPEKVVQKGRLKPGMMLLVD 477 (2142)
T ss_pred eeEEecCCEEEEeecccccCCCHHHhhhccCcCCCeEEEEE
Confidence 88888889999999987654322222 268899987654
No 129
>PRK13795 hypothetical protein; Provisional
Probab=96.45 E-value=0.022 Score=62.73 Aligned_cols=60 Identities=30% Similarity=0.387 Sum_probs=45.0
Q ss_pred ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEee--cCCCChHHHHHHHHHHhCCCceEEEe
Q 010213 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEGSPDLKYAKEVADYLGTVHHEFHF 294 (515)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~--~~~~~d~~~A~~va~~lg~~~~~~~~ 294 (515)
+.++.+.+|||.||++++.++.+.. .++..+.+. .......++++++++++|++++.+..
T Consensus 243 ~~~v~Va~SGGKDS~vll~L~~~a~----------~~~~vvfiDTg~efpet~e~v~~~~~~~gi~i~~~~~ 304 (636)
T PRK13795 243 NLPVSVSFSGGKDSLVVLDLAREAL----------KDFKAFFNNTGLEFPETVENVKEVAEEYGIELIEADA 304 (636)
T ss_pred CCCEEEEecCcHHHHHHHHHHHHhC----------CCcEEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEcc
Confidence 3579999999999999999998865 245555443 33223457899999999998777654
No 130
>PRK13794 hypothetical protein; Provisional
Probab=96.31 E-value=0.061 Score=57.10 Aligned_cols=60 Identities=22% Similarity=0.225 Sum_probs=44.0
Q ss_pred ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEee--cCCCChHHHHHHHHHHhCCCceEEE
Q 010213 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEGSPDLKYAKEVADYLGTVHHEFH 293 (515)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~--~~~~~d~~~A~~va~~lg~~~~~~~ 293 (515)
..++.+.+|||.||++++.++.+.+. .++..+.+. ++.....++++++++++|++.+.+.
T Consensus 247 ~~~v~vs~SGGKDS~v~L~L~~~~~~---------~~~~vvfiDTG~efpet~e~i~~~~~~~gl~i~~~~ 308 (479)
T PRK13794 247 NKPVTVAYSGGKDSLATLLLALKALG---------INFPVLFNDTGLEFPETLENVEDVEKHYGLEIIRTK 308 (479)
T ss_pred CCCEEEEecchHHHHHHHHHHHHHhC---------CCeEEEEEECCCCChHHHHHHHHHHHhcCCcEEEEc
Confidence 35789999999999999999887641 345555553 3322345678999999999876654
No 131
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=96.29 E-value=0.014 Score=46.27 Aligned_cols=21 Identities=48% Similarity=0.624 Sum_probs=18.4
Q ss_pred eEEeecCCcchHHHHHHHHHH
Q 010213 228 FGVLLSGGLDSSLVASITARH 248 (515)
Q Consensus 228 v~v~LSGGlDSs~iaa~a~~~ 248 (515)
+.+.+|||.||+.++.++.+.
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~ 21 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRL 21 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHH
Confidence 457899999999999998875
No 132
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=96.20 E-value=0.062 Score=50.80 Aligned_cols=60 Identities=27% Similarity=0.225 Sum_probs=41.4
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC-------CChHHHHHHHHHHhCCCceEEEeCh
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-------SPDLKYAKEVADYLGTVHHEFHFTV 296 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~-------~~d~~~A~~va~~lg~~~~~~~~~~ 296 (515)
++.+++|||.||+.-+..+.+.. ..+..+|+-..+ ..+...++..|+.+|++++.+..+.
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~~----------~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~~~ 68 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEEH----------EVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYTSG 68 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHcC----------eeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEcCC
Confidence 36789999999999888776542 123333332111 2467889999999999988776543
No 133
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=96.16 E-value=0.021 Score=55.07 Aligned_cols=56 Identities=20% Similarity=0.243 Sum_probs=46.1
Q ss_pred cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHHHhCCCceE
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHE 291 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~~~~~ 291 (515)
+.+..+.|||||+|.|++-+.+. |.++.+|......-.|.+.|++-|-..|..-..
T Consensus 6 ~~vVLAySGgLDTscil~WLkeq----------GyeViay~AnvGQ~edfe~ar~kAlk~Gakk~~ 61 (412)
T KOG1706|consen 6 KSVVLAYSGGLDTSCILAWLKEQ----------GYEVIAYLANVGQKEDFEEARKKALKSGAKKVV 61 (412)
T ss_pred ceEEEEecCCcCchhhhHHHHhc----------CceEEEeeccccchhhHHHHHHhhhhcCceEEE
Confidence 45668899999999999988875 378999987665667899999999999986443
No 134
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=96.07 E-value=0.074 Score=50.15 Aligned_cols=58 Identities=7% Similarity=0.082 Sum_probs=42.0
Q ss_pred cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC-CCh-HHHHHHHHHHhCCCceEEE
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-SPD-LKYAKEVADYLGTVHHEFH 293 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~-~~d-~~~A~~va~~lg~~~~~~~ 293 (515)
.++.+.+|||.||++++.++.+.. +++..+.+.... .+| .++.+++++.++++...+.
T Consensus 14 ~~~~~s~SgGKDS~Vll~L~~~~~----------~~~~v~f~DTg~efpeT~efv~~~~~~~~l~i~~~~ 73 (212)
T TIGR00434 14 GHLVYSTSFGIQGAVLLDLVSKIS----------PDIPVIFLDTGYHFPETYELIDELTERYPLNIKVYK 73 (212)
T ss_pred CCEEEEecCCHHHHHHHHHHHhcC----------CCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEC
Confidence 368999999999999999998765 355555554322 244 3578999999998755443
No 135
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=95.68 E-value=0.13 Score=49.12 Aligned_cols=63 Identities=6% Similarity=0.016 Sum_probs=44.2
Q ss_pred ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC-CCh-HHHHHHHHHHhCCCceEEEeCh
Q 010213 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-SPD-LKYAKEVADYLGTVHHEFHFTV 296 (515)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~-~~d-~~~A~~va~~lg~~~~~~~~~~ 296 (515)
..++.+..|||.||++++.++.+... +++..+.+.... .+| .+++.+++++++++.+.+...+
T Consensus 25 ~~~~~~s~S~Gkds~VlL~l~~~~~~---------~~i~vv~vDTg~~fpET~e~~d~~~~~~~~~l~v~~~~~ 89 (226)
T TIGR02057 25 PHGLVQTSAFGIQALVTLHLLSSISE---------PMIPVIFIDTLYHFPQTLTLKDELTKKYYQTLNLYKYDG 89 (226)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhhC---------CCCCEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEEeCC
Confidence 34588999999999999999998751 345555554322 233 4789999999996555554444
No 136
>PRK06850 hypothetical protein; Provisional
Probab=95.55 E-value=0.22 Score=52.82 Aligned_cols=133 Identities=19% Similarity=0.206 Sum_probs=66.5
Q ss_pred HHHHHHHhh-ccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC-CCChH-HH-------HHHHHH
Q 010213 214 FENAVIKRL-MTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPDL-KY-------AKEVAD 283 (515)
Q Consensus 214 l~~aV~~rl-~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~-~~~d~-~~-------A~~va~ 283 (515)
+.+.++... ..+.|+.|.+|||-||++++.++.+.+...... ..-.+++.++...- ..++. .+ .+..|+
T Consensus 22 ~i~~i~~~Y~~~~~P~vV~fSGGKDStavL~Lv~~Al~~lp~e-~r~k~v~Vi~~DTgvE~Pe~~~~v~~~l~~i~~~a~ 100 (507)
T PRK06850 22 LIEEIQELYCADNRPWVIGYSGGKDSTAVLQLVWNALAGLPPE-KRTKPVYVISSDTLVENPVVVDWVNKSLERINEAAK 100 (507)
T ss_pred HHHHHHHHHhcCCCCeEEeCCCCchHHHHHHHHHHHHHhcchh-ccCCcEEEEECCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 334555544 456789999999999999998887664311000 00023444443211 12322 22 344567
Q ss_pred HhCCCceEEEeChhHHHHHHHHHHHhhccCCCC--cccchH------HH-HHHHHHHHhCCCeEEEeccCccccc
Q 010213 284 YLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVT--TIRAST------PM-FLMSRKIKSLGVKMVISGEGSDEIF 349 (515)
Q Consensus 284 ~lg~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~--~~~~~~------~~-~~l~~~a~~~g~~vlltG~GgDelf 349 (515)
..|++.....+.+..-.+.+..++- ..+..+ ..+... |+ -++.+..++.|-.++++|.=.||=.
T Consensus 101 ~~glpi~~~~v~P~~~~sFwv~liG--rG~P~Ps~~~RWCT~~LKI~P~~r~I~~~~~~~ge~v~vlGvR~~ES~ 173 (507)
T PRK06850 101 KQGLPITPHKLTPKINDTFWVNLIG--KGYPAPRRKFRWCTERLKIDPSNDFIKDKVSEFGEVIVVLGVRKAESA 173 (507)
T ss_pred HcCCceEEEeeCCCcchhHHHHHhc--CCCCCCCCCCccCCcHHHHhHHHHHHHHHHhhcCcEEEEEEeeccccH
Confidence 7788766554444321122223221 111111 122211 11 1233333455778999999888743
No 137
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=95.11 E-value=0.21 Score=52.18 Aligned_cols=123 Identities=21% Similarity=0.189 Sum_probs=61.2
Q ss_pred ccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC-CCChH-H-------HHHHHHHHhCCCceEEE
Q 010213 223 MTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPDL-K-------YAKEVADYLGTVHHEFH 293 (515)
Q Consensus 223 ~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~-~~~d~-~-------~A~~va~~lg~~~~~~~ 293 (515)
..+.|..|.+|||-||++++.++.+.+..... ....+.++.++...- ..++. . ..+..|+..|++.....
T Consensus 11 ~~~~p~vV~fSGGKDSta~L~Lv~~Al~~lp~-e~~~k~v~VI~~DTgvE~Pe~~~~v~~~l~~i~~~a~~~~lpi~~~~ 89 (447)
T TIGR03183 11 SDDIPWVVGYSGGKDSTAVLQLIWNALAALPA-EQRTKKIHVISTDTLVENPIVAAWVNASLERMQEAAQDQGLPIEPHR 89 (447)
T ss_pred hcCCceEEEeCCCHHHHHHHHHHHHHHHhccc-cccCcceEEEECcCCCccHHHHHHHHHHHHHHHHHHHHcCCCeEEEe
Confidence 35678899999999999999888776422100 000023444333211 12321 2 23456677787765544
Q ss_pred eChhHHHHHHHHHHHhhccCCC-CcccchH------HH-HHHHHHHHhCCCeEEEeccCccc
Q 010213 294 FTVQDGIDAIEEVIYHVETYDV-TTIRAST------PM-FLMSRKIKSLGVKMVISGEGSDE 347 (515)
Q Consensus 294 ~~~~~~~~~l~~~~~~~e~~~~-~~~~~~~------~~-~~l~~~a~~~g~~vlltG~GgDe 347 (515)
+.+..-.+.+..++- ...|.+ ...+... |+ -++.+.+++.|..++++|.=.||
T Consensus 90 v~P~~~~~Fwv~liG-rG~P~P~~~~RWCT~~LKI~P~~r~i~~~~~~~g~~v~vlGvR~~E 150 (447)
T TIGR03183 90 LTPEIKDTFWVNLIG-KGYPAPRQKFRWCTDRLKISPSNTFIRDVVAANGEVILVLGTRKAE 150 (447)
T ss_pred cCCCcchHHHHHHhc-CCCCCCCCCCCccChHHHhhHHHHHHHHHHhccCCeEEEEEeehhh
Confidence 444321222222221 111111 1112111 11 12334444567889999998887
No 138
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=94.86 E-value=0.14 Score=52.05 Aligned_cols=71 Identities=24% Similarity=0.327 Sum_probs=52.2
Q ss_pred HHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEe--ecCCCChHHHHHHHHHHhCCCceEEEe
Q 010213 217 AVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV--GLEGSPDLKYAKEVADYLGTVHHEFHF 294 (515)
Q Consensus 217 aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~--~~~~~~d~~~A~~va~~lg~~~~~~~~ 294 (515)
-+++++. +..+-+++|||.|||+.++++.+.+.. ..+++..+ |+-...|....++.-..+|++.+.+..
T Consensus 223 ~i~k~vG-~~~Vl~~vSGgvdStV~a~Ll~~alg~--------~R~~ai~vdNG~mrk~Ea~~V~~tl~~lgi~i~v~~a 293 (552)
T KOG1622|consen 223 EIRKWVG-DYKVLVAVSGGVDSTVCAALLRRALGP--------DRVHAIHVDNGFMRKKEAEQVEKTLVYLGIPITVVDA 293 (552)
T ss_pred HHHHHhc-ccceEEEecCCchHHHHHHHHHHhhCC--------CceEEEEecccchhhhHHHHHHHHHHHcCCceEEeec
Confidence 3445554 667889999999999999999988731 46777766 344456777777777779999888775
Q ss_pred Ch
Q 010213 295 TV 296 (515)
Q Consensus 295 ~~ 296 (515)
+.
T Consensus 294 s~ 295 (552)
T KOG1622|consen 294 SE 295 (552)
T ss_pred hH
Confidence 53
No 139
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=94.80 E-value=0.27 Score=47.90 Aligned_cols=60 Identities=17% Similarity=0.277 Sum_probs=43.1
Q ss_pred ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEee--cCCCChHHHHHHHHHHhCCCceEEEe
Q 010213 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEGSPDLKYAKEVADYLGTVHHEFHF 294 (515)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~--~~~~~d~~~A~~va~~lg~~~~~~~~ 294 (515)
..++.+..|||.||++++.++.+.. .++..+.+. +.-..-.+++.++++++|++..+...
T Consensus 39 ~~~~~~~~S~Gkds~V~l~L~~k~~----------~~~~vif~DTg~~f~Et~~~~d~~~~~~~~~l~~~~~ 100 (261)
T COG0175 39 SNPVVVSFSGGKDSTVLLHLAAKAF----------PDFPVIFLDTGYHFPETYEFRDRLAEEYGLDLKVYRP 100 (261)
T ss_pred CCCeEEEecCchhHHHHHHHHHHhc----------CCCcEEEEeCCCcCHHHHHHHHHHHHHcCCeEEEecC
Confidence 3457899999999999999999876 334455443 22222357899999999977655543
No 140
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=93.90 E-value=0.69 Score=43.21 Aligned_cols=60 Identities=23% Similarity=0.234 Sum_probs=41.6
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCcee-eEEeecCC-------CChHHHHHHHHHHhCCCceEEEeCh
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLH-SFCVGLEG-------SPDLKYAKEVADYLGTVHHEFHFTV 296 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~-~~t~~~~~-------~~d~~~A~~va~~lg~~~~~~~~~~ 296 (515)
++.+++|||-||..-+..|-+.. ..+. .+++..+. .+....+...|+.+|+++.....+.
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~~G----------~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g 69 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALEEG----------HEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSG 69 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHHcC----------CeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCc
Confidence 36789999999987777776543 3443 33433222 2467889999999999977766554
No 141
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=92.61 E-value=0.6 Score=44.09 Aligned_cols=59 Identities=22% Similarity=0.186 Sum_probs=34.7
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC-------CChHHHHHHHHHHhCCCceEEEeC
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-------SPDLKYAKEVADYLGTVHHEFHFT 295 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~-------~~d~~~A~~va~~lg~~~~~~~~~ 295 (515)
++.+++|||-||+.-+..|.+.. .-...+|+-.++ ..-....+..|+.+|+++..+.++
T Consensus 2 k~v~l~SGGKDS~lAl~~a~~~~----------~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~ 67 (218)
T PF01902_consen 2 KVVALWSGGKDSCLALYRALRQH----------EVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPTS 67 (218)
T ss_dssp EEEEE--SSHHHHHHHHHHHHT-----------EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE-
T ss_pred cEEEEEcCcHHHHHHHHHHHHhC----------CccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEcc
Confidence 36788999999998777666542 122333432221 123457788899999999888876
No 142
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=92.45 E-value=0.28 Score=48.35 Aligned_cols=44 Identities=23% Similarity=0.229 Sum_probs=32.8
Q ss_pred ccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC
Q 010213 223 MTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG 271 (515)
Q Consensus 223 ~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~ 271 (515)
..-..|+|.+|||-||++++.++++...+.+. .+|..+.+.+++
T Consensus 25 ~~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~-----~~i~VlfiD~E~ 68 (407)
T COG3969 25 NTFPRVCVSFSGGKDSGLMLHLVAEVARENGR-----DKISVLFIDWEA 68 (407)
T ss_pred hcCCeEEEEecCCCchhHHHHHHHHHHHHhCC-----CceEEEEEcchh
Confidence 44567999999999999999999887654321 257777776654
No 143
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=91.62 E-value=2.3 Score=40.32 Aligned_cols=57 Identities=18% Similarity=0.163 Sum_probs=38.3
Q ss_pred eEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC-------CChHHHHHHHHHHhCCCceEEEe
Q 010213 228 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-------SPDLKYAKEVADYLGTVHHEFHF 294 (515)
Q Consensus 228 v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~-------~~d~~~A~~va~~lg~~~~~~~~ 294 (515)
+.++.|||-||+.-+..|.+.. ..+..+|+-..+ .......+..|+.+|+++..+..
T Consensus 3 ~~~l~SGGKDS~~al~~a~~~~----------~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~ 66 (223)
T TIGR00290 3 VAALISGGKDSCLALYHALKEH----------EVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYT 66 (223)
T ss_pred EEEEecCcHHHHHHHHHHHHhC----------eeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeec
Confidence 5688999999998877776542 233333432221 23557889999999999876543
No 144
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=86.20 E-value=3.5 Score=42.87 Aligned_cols=69 Identities=29% Similarity=0.399 Sum_probs=41.0
Q ss_pred eEEeecCCcchHHHHHHHHHHhcc---------ccccc---------cCC---------CceeeEEeecCCCC-h-HHHH
Q 010213 228 FGVLLSGGLDSSLVASITARHLAG---------TKAAR---------QWG---------TQLHSFCVGLEGSP-D-LKYA 278 (515)
Q Consensus 228 v~v~LSGGlDSs~iaa~a~~~~~~---------~~~~~---------~~~---------~~i~~~t~~~~~~~-d-~~~A 278 (515)
.-+.||||+||+++|++....... +++.. ++- .-++|.-++.+++. | +.-|
T Consensus 352 fflPLSGG~DSsatA~iV~sMC~~V~~av~~g~eqv~~Dvr~i~~~~~~~p~dp~~l~nri~~TcyMgSenSS~ETr~ra 431 (706)
T KOG2303|consen 352 FFLPLSGGVDSSATAAIVYSMCRQVCKAVQSGDEQVLADVRRIVNDISYTPTDPADLCNRILYTCYMGSENSSKETRRRA 431 (706)
T ss_pred eEEecCCCccchHHHHHHHHHHHHHHHHHHcCchhhhhhhHHHhcCCCcCCCCHHHHHHhhhhhheeccccccHHHHHHH
Confidence 446799999999998875433211 01000 000 00223334444443 3 4679
Q ss_pred HHHHHHhCCCceEEEeCh
Q 010213 279 KEVADYLGTVHHEFHFTV 296 (515)
Q Consensus 279 ~~va~~lg~~~~~~~~~~ 296 (515)
+++|+.+|.-|..+.++.
T Consensus 432 k~La~~igs~H~~i~iD~ 449 (706)
T KOG2303|consen 432 KELANQIGSYHIDLNIDT 449 (706)
T ss_pred HHHHHhhcceeeeeeehH
Confidence 999999999998888764
No 145
>KOG2840 consensus Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily [General function prediction only]
Probab=77.94 E-value=8.2 Score=38.22 Aligned_cols=119 Identities=19% Similarity=0.185 Sum_probs=64.6
Q ss_pred cccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEe--ecCCC-ChHH-HHHHHHHHhCCCceEEEeChhHH
Q 010213 224 TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV--GLEGS-PDLK-YAKEVADYLGTVHHEFHFTVQDG 299 (515)
Q Consensus 224 ~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~--~~~~~-~d~~-~A~~va~~lg~~~~~~~~~~~~~ 299 (515)
....|++--|||-||+++|.....+.... ..|..+...++ +..+. ++.. ..++....+|++..++. ..++
T Consensus 50 rge~v~igasGgkdstvlA~v~~~Ln~r~----~~g~~l~Lls~degi~gyrd~sl~avkrn~~~~~lPL~ivs--~~dl 123 (347)
T KOG2840|consen 50 RGERVAIGASGGKDSTVLAYVLDALNERH----DYGLRLFLLSIDEGIRGYRDDSLEAVKRNGVQYGLPLCIVS--YKDL 123 (347)
T ss_pred CCCccccccccchhHHHHHHHHHHhhhhc----CCCceeeeeeccccccceeccHHHHHHHhhhhcCCceEEec--HHHH
Confidence 34558899999999999999887654221 11233444443 22232 3443 34556678999988764 4444
Q ss_pred HH-----HHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccc
Q 010213 300 ID-----AIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIF 349 (515)
Q Consensus 300 ~~-----~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf 349 (515)
.. .+...+. .+.-+..++...+..-++-+.+...|+.-+.||+.+|..+
T Consensus 124 ~~~~tmd~i~~~i~-~~~rn~ctfCgv~RrqaL~~ga~~l~~~~~~tghnaDD~a 177 (347)
T KOG2840|consen 124 YGEWTMDEIVSEIG-QEIRNNCTFCGVFRRQALDRGADVLGAAELVTGHNADDWA 177 (347)
T ss_pred hccchHHHHHHHHh-hhhhcCceeecHHHHHHHHhhccccchhhhhhcccchHHH
Confidence 33 2222111 1122222222222222344444556677788888888754
No 146
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=65.87 E-value=35 Score=30.95 Aligned_cols=96 Identities=13% Similarity=0.053 Sum_probs=54.2
Q ss_pred ecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChHH------HHHHHHHHhCCCceEEEeChhHHHHHHHH
Q 010213 232 LSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLK------YAKEVADYLGTVHHEFHFTVQDGIDAIEE 305 (515)
Q Consensus 232 LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~------~A~~va~~lg~~~~~~~~~~~~~~~~l~~ 305 (515)
.-=|.||+.+.-.+.+.. .+++.|-+...-.|..+ ..+++|+.++++..+-..+++++++.+
T Consensus 5 ~CCaPCs~~~~~~L~~~g----------~~vt~~fyNPNIhP~~Ey~~R~~~~~~~~~~~~i~~i~~~Y~~~~w~~~v-- 72 (176)
T PF02677_consen 5 ICCAPCSTYPLERLREEG----------FDVTGYFYNPNIHPYEEYERRLEELKRFAEKLGIPLIEGDYDPEEWLRAV-- 72 (176)
T ss_pred ecCccccHHHHHHHHHCC----------CCeEEEEeCCCCCcHHHHHHHHHHHHHHHHHcCCCEEecCCCHHHHHHHH--
Confidence 344788998877776642 46666665544445443 456789999998665555555544433
Q ss_pred HHHhhcc-CC---CCcccchHHHHHHHHHHHhCCCeEEEe
Q 010213 306 VIYHVET-YD---VTTIRASTPMFLMSRKIKSLGVKMVIS 341 (515)
Q Consensus 306 ~~~~~e~-~~---~~~~~~~~~~~~l~~~a~~~g~~vllt 341 (515)
...+. |. -........+-..++.|++.|.+..-|
T Consensus 73 --~~~e~epE~g~RC~~Cy~~RL~~tA~~A~e~gfd~FtT 110 (176)
T PF02677_consen 73 --KGLEDEPEGGKRCRVCYDLRLEKTAQYAKELGFDYFTT 110 (176)
T ss_pred --hhCccCCccCchhHHHHHHHHHHHHHHHHHcCCCEEEc
Confidence 22332 21 111112233445677788887655444
No 147
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=59.68 E-value=20 Score=33.02 Aligned_cols=49 Identities=8% Similarity=0.183 Sum_probs=35.2
Q ss_pred CcchHHHHHHHHHHhccccccccCCCceeeEEeecCC-CCh-HHHHHHHHHHhCCCceEEE
Q 010213 235 GLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-SPD-LKYAKEVADYLGTVHHEFH 293 (515)
Q Consensus 235 GlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~-~~d-~~~A~~va~~lg~~~~~~~ 293 (515)
|+||.+++.++.+.. +++..+.+.... .+| .+++.++++++|++.+.+.
T Consensus 2 ~~~s~Vll~L~~~~~----------~~~~vifvDTg~~FpET~~~~d~~~~~~~l~i~~~~ 52 (191)
T TIGR02055 2 GAEDVVLVDLAAKVR----------PDVKVFFLDTGRLFKETYETIDQVRERYDILIDVLS 52 (191)
T ss_pred ChHHHHHHHHHHhcC----------CCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEc
Confidence 789999999999875 345555553221 233 4789999999999866654
No 148
>PF08057 Ery_res_leader2: Erythromycin resistance leader peptide; InterPro: IPR012559 This family consists of erythromycin resistance gene leader peptides. These leader peptides are involved in the transcriptional attenuation control of the synthesis of the macrolide-lincosamide -streptogramin B resistance protein. It acts as a transcriptional attenuator, in contrast to other inducible erm genes. The mRNA leader sequence can fold in either of two mutually exclusive conformations, one of which is postulated to form in the absence of induction, and to contain two rho factor-independent terminators [].; GO: 0046677 response to antibiotic
Probab=53.40 E-value=6.9 Score=19.03 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=10.4
Q ss_pred cccCceeccCCCC
Q 010213 388 SAWGLEARVPFLD 400 (515)
Q Consensus 388 ~~~g~e~r~PflD 400 (515)
|.|++.+|+|.|.
T Consensus 1 mthsmrlrfptln 13 (14)
T PF08057_consen 1 MTHSMRLRFPTLN 13 (14)
T ss_pred CccceeeeccccC
Confidence 4678889999875
No 149
>PLN02309 5'-adenylylsulfate reductase
Probab=50.77 E-value=72 Score=33.77 Aligned_cols=57 Identities=12% Similarity=0.159 Sum_probs=37.4
Q ss_pred cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC-CCh-HHHHHHHHHHhCCCceEEE
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-SPD-LKYAKEVADYLGTVHHEFH 293 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~-~~d-~~~A~~va~~lg~~~~~~~ 293 (515)
.++++..|||-|| +++.++.+.. +++..|.+..-- .+| .+++.++++++|++.+.+.
T Consensus 111 ~~ia~~~SG~ed~-vll~l~~~~~----------~~ipV~flDTG~lfpETy~~~d~v~~~ygl~i~~~~ 169 (457)
T PLN02309 111 NDIAIAFSGAEDV-ALIEYAHLTG----------RPFRVFSLDTGRLNPETYRLFDAVEKHYGIRIEYMF 169 (457)
T ss_pred CCEEEEecchHHH-HHHHHHHHhC----------CCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEC
Confidence 4688889976666 5556666543 455556553321 234 5789999999999876653
No 150
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=42.96 E-value=1.1e+02 Score=32.51 Aligned_cols=57 Identities=11% Similarity=0.130 Sum_probs=38.1
Q ss_pred cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEee--cCCCChHHHHHHHHHHhCCCceEEE
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEGSPDLKYAKEVADYLGTVHHEFH 293 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~--~~~~~d~~~A~~va~~lg~~~~~~~ 293 (515)
.++++..|||-||. ++.++.+.. +++..+++. +.-..=.+++.++++++|++.+.+.
T Consensus 116 ~~iavasSG~edsv-Llhl~~~~~----------~~ipV~flDTG~lFpETy~~~d~v~~~ygl~l~~~~ 174 (463)
T TIGR00424 116 NDIAIAFSGAEDVA-LIEYAHLTG----------RPFRVFSLDTGRLNPETYRFFDAVEKQYGIRIEYMF 174 (463)
T ss_pred CCEEEEeccHHHHH-HHHHHHHhC----------CCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEC
Confidence 36889999777764 566776654 455556553 3222335788999999999876553
No 151
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=39.57 E-value=25 Score=33.07 Aligned_cols=18 Identities=44% Similarity=0.440 Sum_probs=14.2
Q ss_pred ccceEEeecCCcchHHHH
Q 010213 225 DVPFGVLLSGGLDSSLVA 242 (515)
Q Consensus 225 ~~~v~v~LSGGlDSs~ia 242 (515)
.+-.|++||||+||..-.
T Consensus 54 kGy~g~llSGGm~srg~V 71 (275)
T COG1856 54 KGYEGCLLSGGMDSRGKV 71 (275)
T ss_pred cCceeEEEeCCcCCCCCc
Confidence 345699999999998643
No 152
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=38.07 E-value=2.2e+02 Score=29.52 Aligned_cols=117 Identities=15% Similarity=0.171 Sum_probs=63.0
Q ss_pred HHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHHHhCCCceE
Q 010213 212 QAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHE 291 (515)
Q Consensus 212 ~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~~~~~ 291 (515)
+.+++.+..- ...+-++++|.|+=+...+- ..+.+. +..+.+.. +.-..-..+.+++..++|++-..
T Consensus 80 ~~le~~iaal--~ga~~~l~fsSGmaA~~~al--~~L~~~-------g~~iV~~~--~~Y~gT~~~l~~~~~~~gie~~~ 146 (409)
T KOG0053|consen 80 DVLESGIAAL--EGAAHALLFSSGMAAITVAL--LHLLPA-------GDHIVATG--DVYGGTLRILRKFLPKFGGEGDF 146 (409)
T ss_pred HHHHHHHHHH--hCCceEEEecccHHHHHHHH--HHhcCC-------CCcEEEeC--CCcccHHHHHHHHHHHhCceeee
Confidence 3444544443 23344789999994444332 222321 23444443 33345667888899999998666
Q ss_pred EEeChh-HHHHHHHH-H-HHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEec
Q 010213 292 FHFTVQ-DGIDAIEE-V-IYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISG 342 (515)
Q Consensus 292 ~~~~~~-~~~~~l~~-~-~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG 342 (515)
+..+.- ++...+.+ . +-.+|+|.+|..... -.-.+.+.|++.|+-|++..
T Consensus 147 vd~~~~~~~~~~i~~~t~~V~~ESPsNPll~v~-DI~~l~~la~~~g~~vvVDn 199 (409)
T KOG0053|consen 147 VDVDDLKKILKAIKENTKAVFLESPSNPLLKVP-DIEKLARLAHKYGFLVVVDN 199 (409)
T ss_pred echhhHHHHHHhhccCceEEEEECCCCCccccc-cHHHHHHHHhhCCCEEEEeC
Confidence 654431 22222222 0 113566765543221 12356778888999988853
No 153
>KOG3147 consensus 6-phosphogluconolactonase - like protein [Carbohydrate transport and metabolism]
Probab=32.77 E-value=4.6e+02 Score=25.25 Aligned_cols=41 Identities=24% Similarity=0.169 Sum_probs=26.5
Q ss_pred cHHHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHh
Q 010213 206 DPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHL 249 (515)
Q Consensus 206 ~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~ 249 (515)
..+++.+.+.+--...+..++...+.|||| |++-++...+.
T Consensus 20 l~~~l~~~~~~~s~~~~~~~g~F~i~lSGG---SLi~~L~~~l~ 60 (252)
T KOG3147|consen 20 LIEALAGYIAEKSEKALKKRGRFTLALSGG---SLIQVLSKLLE 60 (252)
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEEcCC---cHHHHHHHHhc
Confidence 344555555544455556777899999999 56666665544
No 154
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=28.45 E-value=2.5e+02 Score=24.89 Aligned_cols=59 Identities=24% Similarity=0.360 Sum_probs=37.4
Q ss_pred ChHHH---HHHHHHHhCCCceEEEeChhHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccc
Q 010213 273 PDLKY---AKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIF 349 (515)
Q Consensus 273 ~d~~~---A~~va~~lg~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf 349 (515)
+|++. |..+.+.+|++++...++.. .+|+ .++..++.+.+.|++|++.|-||-.-+
T Consensus 13 SD~~~mk~Aa~~L~~fgi~ye~~VvSAH-------------RTPe--------~m~~ya~~a~~~g~~viIAgAGgAAHL 71 (162)
T COG0041 13 SDWDTMKKAAEILEEFGVPYEVRVVSAH-------------RTPE--------KMFEYAEEAEERGVKVIIAGAGGAAHL 71 (162)
T ss_pred chHHHHHHHHHHHHHcCCCeEEEEEecc-------------CCHH--------HHHHHHHHHHHCCCeEEEecCcchhhc
Confidence 45554 45556778888766554421 1121 234456778889999999999986655
Q ss_pred cCC
Q 010213 350 GGY 352 (515)
Q Consensus 350 ~Gy 352 (515)
-|.
T Consensus 72 PGm 74 (162)
T COG0041 72 PGM 74 (162)
T ss_pred chh
Confidence 443
No 155
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.37 E-value=4.3e+02 Score=24.34 Aligned_cols=103 Identities=13% Similarity=0.043 Sum_probs=56.1
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChHH------HHHHHHHHhCCCceEEEe-ChhHH
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLK------YAKEVADYLGTVHHEFHF-TVQDG 299 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~------~A~~va~~lg~~~~~~~~-~~~~~ 299 (515)
++-+..--+.||+.++-.+.+.. .++..|-+...-.+..+ ...++|+++|++..+-.. +.+++
T Consensus 5 kiLlH~CCAPcs~y~le~l~~~~----------~~i~~yFYNPNIhP~~EY~~R~~e~~~f~~~~~i~~iegdY~~~~~w 74 (204)
T COG1636 5 KLLLHSCCAPCSGYVLEKLRDSG----------IKITIYFYNPNIHPLSEYELRKEEVKRFAEKFGINFIEGDYEDLEKW 74 (204)
T ss_pred eeEEEeecCCCcHHHHHHHHhcC----------cceEEEEeCCCCCchHHHHHHHHHHHHHHHHcCCeeeecCcccHHHH
Confidence 45566667889998887766542 35555544433334333 346789999987665444 22334
Q ss_pred HHHHHHHHHhhccCCCCccc----chHHHHHHHHHHHhCCCeEEEecc
Q 010213 300 IDAIEEVIYHVETYDVTTIR----ASTPMFLMSRKIKSLGVKMVISGE 343 (515)
Q Consensus 300 ~~~l~~~~~~~e~~~~~~~~----~~~~~~~l~~~a~~~g~~vlltG~ 343 (515)
++.+ ..+|.-.....+ ..+.+-..++.|.+.|.+++-|-.
T Consensus 75 ~~~v----Kg~E~EpE~G~RC~~Cfd~Rle~tA~~A~e~G~d~ftttL 118 (204)
T COG1636 75 FERV----KGMEDEPEGGKRCTMCFDMRLEKTAKKAKELGFDVFTTTL 118 (204)
T ss_pred HHHh----hcchhCCCCCchhHhHHHHHHHHHHHHHHHcCCchhhhhe
Confidence 3333 223321111122 223333457788888876665543
No 156
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=21.16 E-value=5.4e+02 Score=26.74 Aligned_cols=116 Identities=15% Similarity=0.116 Sum_probs=59.1
Q ss_pred HHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHHHhCCCceEE
Q 010213 213 AFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEF 292 (515)
Q Consensus 213 ~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~~~~~~ 292 (515)
.|++++..- ....-++++|.|+=. |....-...+. |..+....-.| ..-..+...+.+.+|++...+
T Consensus 67 ~lE~~~a~L--Eg~~~~~afsSGmaA--I~~~~l~ll~~-------GD~vl~~~~~Y--G~t~~~~~~~l~~~gi~~~~~ 133 (396)
T COG0626 67 ALEEALAEL--EGGEDAFAFSSGMAA--ISTALLALLKA-------GDHVLLPDDLY--GGTYRLFEKILQKFGVEVTFV 133 (396)
T ss_pred HHHHHHHHh--hCCCcEEEecCcHHH--HHHHHHHhcCC-------CCEEEecCCcc--chHHHHHHHHHHhcCeEEEEE
Confidence 344444433 245568999999943 33322223321 22332222111 234566778888899876655
Q ss_pred EeChh-HHHHHHHH--H-HHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEec
Q 010213 293 HFTVQ-DGIDAIEE--V-IYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISG 342 (515)
Q Consensus 293 ~~~~~-~~~~~l~~--~-~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG 342 (515)
..... .....+.. . +-.+|+|.++.+... -.-.+++.|++.|+.+++..
T Consensus 134 d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~-DI~~i~~~A~~~g~~vvVDN 186 (396)
T COG0626 134 DPGDDEALEAAIKEPNTKLVFLETPSNPLLEVP-DIPAIARLAKAYGALVVVDN 186 (396)
T ss_pred CCCChHHHHHHhcccCceEEEEeCCCCcccccc-cHHHHHHHHHhcCCEEEEEC
Confidence 43322 22323211 1 113577766554321 12356778888888887754
No 157
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=20.90 E-value=5.3e+02 Score=22.00 Aligned_cols=70 Identities=17% Similarity=0.144 Sum_probs=39.6
Q ss_pred ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCC-hHHHHHHHHHHhCCCceEEEeChhHHHHHH
Q 010213 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSP-DLKYAKEVADYLGTVHHEFHFTVQDGIDAI 303 (515)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~-d~~~A~~va~~lg~~~~~~~~~~~~~~~~l 303 (515)
..+.-+++|.|.|+......+.... + .++..+++++.... .....+++|+..|-....+.-+.+++.+.+
T Consensus 99 ~~~~iv~iTDG~~~~~~~~~~~~~~-~--------~~i~i~~v~~~~~~~~~~~l~~la~~tgG~~~~~~~~~~~l~~~~ 169 (172)
T PF13519_consen 99 RRRAIVLITDGEDNSSDIEAAKALK-Q--------QGITIYTVGIGSDSDANEFLQRLAEATGGRYFHVDNDPEDLDDAF 169 (172)
T ss_dssp EEEEEEEEES-TTHCHHHHHHHHHH-C--------TTEEEEEEEES-TT-EHHHHHHHHHHTEEEEEEE-SSSHHHHHHH
T ss_pred CceEEEEecCCCCCcchhHHHHHHH-H--------cCCeEEEEEECCCccHHHHHHHHHHhcCCEEEEecCCHHHHHHHH
Confidence 3456788999998865555444433 1 35666666654432 246788888888765443322444444433
No 158
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=20.57 E-value=3.7e+02 Score=26.08 Aligned_cols=57 Identities=14% Similarity=-0.039 Sum_probs=28.3
Q ss_pred EEeec----CCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHHHhCCCceE
Q 010213 229 GVLLS----GGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHE 291 (515)
Q Consensus 229 ~v~LS----GGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~~~~~ 291 (515)
++++| +|.|+...+.+++...++. +.++...-....+.+-....-.+|+.||+++..
T Consensus 84 avli~d~~~~g~D~~~tA~~La~ai~~~------~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt 144 (256)
T PRK03359 84 LIVVIDDQFEQALPQQTASALAAAAQKA------GFDLILCGDGSSDLYAQQVGLLVGEILNIPAIN 144 (256)
T ss_pred EEEEecCcccCcCHHHHHHHHHHHHHHh------CCCEEEEcCccccCCCCcHHHHHHHHhCCCcee
Confidence 45554 4567777766666655321 122222221111222334556677777777543
No 159
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=20.53 E-value=2.4e+02 Score=26.14 Aligned_cols=30 Identities=23% Similarity=0.497 Sum_probs=22.0
Q ss_pred HHHHHHHHHhCCCeEEEeccCcc---ccccCCc
Q 010213 324 MFLMSRKIKSLGVKMVISGEGSD---EIFGGYL 353 (515)
Q Consensus 324 ~~~l~~~a~~~g~~vlltG~GgD---elf~Gy~ 353 (515)
.+.+.+.+...|..|++.|.--| |+|.|-+
T Consensus 99 v~~l~~lad~lgi~Vi~~GL~~DFrgepFe~s~ 131 (201)
T COG1435 99 VYVLNELADRLGIPVICYGLDTDFRGEPFEGSK 131 (201)
T ss_pred HHHHHHHHhhcCCEEEEeccccccccCCCccHH
Confidence 45667777777999999998887 4555443
Done!