Query 010213
Match_columns 515
No_of_seqs 352 out of 2513
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 22:21:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010213.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010213hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ct9_A Asparagine synthetase B 100.0 5E-101 2E-105 821.8 48.2 503 2-510 1-509 (553)
2 1jgt_A Beta-lactam synthetase; 100.0 3E-77 1E-81 632.9 30.6 387 60-480 57-472 (513)
3 1q15_A CARA; CMPR, (2S,5S)-5-c 100.0 3.1E-77 1.1E-81 631.9 29.8 425 43-511 27-487 (503)
4 1ao0_A Glutamine phosphoribosy 100.0 9.6E-36 3.3E-40 311.8 23.5 215 2-223 1-271 (459)
5 1xff_A D-fructose-6-, glucosam 100.0 5.7E-35 2E-39 280.4 23.2 179 2-190 1-222 (240)
6 1ecf_A Glutamine phosphoribosy 100.0 5.3E-31 1.8E-35 278.5 21.9 179 2-185 1-235 (504)
7 2bpl_A Glucosamine--fructose-6 100.0 6.9E-31 2.4E-35 284.6 21.8 176 2-187 1-219 (608)
8 3mdn_A Glutamine aminotransfer 99.9 2.4E-26 8.2E-31 223.2 12.0 142 43-190 82-255 (274)
9 1te5_A Conserved hypothetical 99.9 5.6E-23 1.9E-27 198.2 6.1 174 1-188 1-252 (257)
10 1ea0_A Glutamate synthase [NAD 99.6 6.6E-15 2.3E-19 167.0 13.8 159 17-183 144-394 (1479)
11 1ofd_A Ferredoxin-dependent gl 99.6 3E-14 1E-18 162.0 16.6 159 17-183 144-393 (1520)
12 2e18_A NH(3)-dependent NAD(+) 99.1 6.7E-11 2.3E-15 114.1 6.9 133 207-354 6-141 (257)
13 3bl5_A Queuosine biosynthesis 99.0 6E-10 2.1E-14 104.6 10.4 117 225-353 3-130 (219)
14 1xng_A NH(3)-dependent NAD(+) 99.0 4E-10 1.4E-14 109.3 8.6 129 208-353 10-143 (268)
15 1kqp_A NAD+ synthase, NH(3)-de 99.0 4E-10 1.4E-14 109.2 8.4 142 206-354 21-169 (271)
16 3n05_A NH(3)-dependent NAD(+) 99.0 9.8E-10 3.4E-14 118.3 8.9 138 206-355 305-446 (590)
17 3k32_A Uncharacterized protein 98.9 2.8E-09 9.7E-14 98.8 10.4 109 226-349 7-115 (203)
18 3fiu_A NH(3)-dependent NAD(+) 98.9 4.2E-09 1.4E-13 100.6 8.8 134 206-354 12-154 (249)
19 3p52_A NH(3)-dependent NAD(+) 98.8 4.1E-09 1.4E-13 100.6 7.3 131 208-353 7-144 (249)
20 2pg3_A Queuosine biosynthesis 98.8 1.7E-08 5.7E-13 95.7 11.2 117 226-353 3-133 (232)
21 1wxi_A NH(3)-dependent NAD(+) 98.8 7.9E-09 2.7E-13 100.1 8.3 138 214-354 26-172 (275)
22 2dpl_A GMP synthetase, GMP syn 98.7 3.4E-08 1.2E-12 97.4 8.3 125 209-348 5-133 (308)
23 2hma_A Probable tRNA (5-methyl 98.7 3.5E-08 1.2E-12 99.9 8.6 114 225-349 9-137 (376)
24 1wy5_A TILS, hypothetical UPF0 98.7 1E-07 3.6E-12 94.5 11.5 126 208-348 5-138 (317)
25 1vl2_A Argininosuccinate synth 98.6 1E-07 3.5E-12 96.6 11.1 109 226-345 15-130 (421)
26 2nz2_A Argininosuccinate synth 98.6 1.3E-07 4.5E-12 96.5 11.8 111 224-345 4-121 (413)
27 1kor_A Argininosuccinate synth 98.6 1.4E-07 4.8E-12 96.0 11.7 110 227-346 2-118 (400)
28 2der_A TRNA-specific 2-thiouri 98.5 1.4E-07 4.7E-12 95.6 8.7 113 225-348 17-145 (380)
29 3q4g_A NH(3)-dependent NAD(+) 98.5 9.1E-08 3.1E-12 92.4 6.1 141 209-354 26-181 (279)
30 3sdb_A Glutamine-dependent NAD 98.5 6.3E-08 2.1E-12 105.5 4.5 141 208-354 342-493 (680)
31 1k92_A Argininosuccinate synth 98.4 5.6E-07 1.9E-11 92.2 8.2 112 222-344 7-130 (455)
32 3a2k_A TRNA(Ile)-lysidine synt 98.3 1.8E-06 6.2E-11 90.0 10.8 120 214-347 5-131 (464)
33 3dpi_A NAD+ synthetase; ssgcid 98.3 4.4E-07 1.5E-11 87.7 5.4 134 212-354 31-181 (285)
34 3tqi_A GMP synthase [glutamine 98.2 2E-06 6.7E-11 91.1 9.2 123 209-349 215-344 (527)
35 1gpm_A GMP synthetase, XMP ami 98.2 1.6E-06 5.6E-11 91.7 8.4 125 207-346 210-339 (525)
36 2ywb_A GMP synthase [glutamine 98.2 4E-06 1.4E-10 88.3 9.9 125 208-348 193-321 (503)
37 3ilv_A Glutamine-dependent NAD 98.2 5.6E-06 1.9E-10 89.6 10.4 145 207-354 283-471 (634)
38 1sur_A PAPS reductase; assimil 98.1 9.5E-06 3.3E-10 75.6 10.5 119 213-348 35-160 (215)
39 2c5s_A THII, probable thiamine 98.1 7.5E-06 2.6E-10 84.0 9.3 108 225-348 187-303 (413)
40 2vxo_A GMP synthase [glutamine 98.1 3.2E-05 1.1E-09 84.1 14.3 80 207-295 223-304 (697)
41 1ni5_A Putative cell cycle pro 98.0 2E-05 6.9E-10 81.3 10.9 112 217-347 5-120 (433)
42 4f4h_A Glutamine dependent NAD 97.9 6.3E-05 2.1E-09 80.1 13.5 139 206-355 279-426 (565)
43 3uow_A GMP synthetase; structu 97.9 3.5E-05 1.2E-09 81.9 11.5 126 208-348 239-373 (556)
44 2o8v_A Phosphoadenosine phosph 97.8 1.6E-05 5.3E-10 76.0 4.9 108 226-347 46-160 (252)
45 1zun_A Sulfate adenylyltransfe 97.8 6.7E-05 2.3E-09 74.2 9.2 110 226-349 47-160 (325)
46 2oq2_A Phosphoadenosine phosph 97.7 7.4E-05 2.5E-09 71.7 8.7 112 226-348 42-164 (261)
47 1vbk_A Hypothetical protein PH 97.4 0.0002 6.8E-09 70.2 7.3 80 226-347 180-267 (307)
48 3rjz_A N-type ATP pyrophosphat 97.4 0.00025 8.7E-09 66.4 7.0 60 227-296 6-73 (237)
49 2goy_A Adenosine phosphosulfat 96.9 0.0035 1.2E-07 60.3 9.5 59 226-295 55-115 (275)
50 2wsi_A FAD synthetase; transfe 96.2 0.0069 2.4E-07 59.2 6.7 104 226-350 54-172 (306)
51 3fwk_A FMN adenylyltransferase 92.7 0.15 5.1E-06 49.3 6.1 66 226-291 59-138 (308)
52 1ofd_A Ferredoxin-dependent gl 22.0 72 0.0025 37.4 4.7 31 2-32 1-32 (1520)
53 1ea0_A Glutamate synthase [NAD 20.4 68 0.0023 37.4 4.1 32 2-33 1-33 (1479)
No 1
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=100.00 E-value=5.1e-101 Score=821.82 Aligned_cols=503 Identities=56% Similarity=0.972 Sum_probs=447.9
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEECCEEEEEeeeeecCCCCCCCceeeCCCcEEEEEeeEEcCh
Q 010213 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYNH 81 (515)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nGei~n~ 81 (515)
|||+|+++.+.........+..|+..|+|||||++|++..+++++||+||+|+|+..+.||+.+.+++++++|||||||+
T Consensus 1 CGI~G~~~~~~~~~~~~~~~~~m~~~l~hRGpD~~G~~~~~~~~lgh~Rlsi~~~~~~~QP~~~~~~~~~lv~NGeIyN~ 80 (553)
T 1ct9_A 1 ASIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNH 80 (553)
T ss_dssp CEEEEEESCCSCHHHHHHHHHHHHHTTGGGCBTEEEEEECSSEEEEEEECCCSCTTTCCSSEECTTSCEEEEEEEEETTH
T ss_pred CEEEEEEcCCCcchhHHHHHHHHHHHHhccCCCcccEEEECCEEEEEEeeeeeCCCCCCCCeEeCCCCEEEEEEEEEECH
Confidence 99999998654322235678899999999999999999999999999999999977789999998899999999999999
Q ss_pred HHHHHHh-cCCCccCCChHHHHHHHHHHHHHhhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcC
Q 010213 82 EALRERL-TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSE 160 (515)
Q Consensus 82 ~~L~~~l-~~~~~~~~~D~e~i~~~~~~~G~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe 160 (515)
.+|+++| ..+.|++.||||+|+++|++||.+++++|+|+|||++||.++++++++||++|+|||||+...++.++||||
T Consensus 81 ~eLr~~L~~~~~f~s~sDtEvil~l~~~~g~~~l~~l~G~fa~~i~d~~~~~l~~aRD~~G~~PLy~~~~~~~~~~faSe 160 (553)
T 1ct9_A 81 QALRAEYGDRYQFQTGSDCEVILALYQEKGPEFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASE 160 (553)
T ss_dssp HHHHHHHTTTSCCCSCCTTHHHHHHHHHHTTTTGGGCCEEEEEEEEETTTTEEEEEECTTCCSCCEEEECTTCCEEEESS
T ss_pred HHHHHHHhccCccCCCCcHHHHHHHHHHHHHHHHHhCCccEEEEEEECCCCEEEEEECCCCCCCeEEEEecCCEEEEeec
Confidence 9999999 337899999999999999999999999999999999999988999999999999999999743578999999
Q ss_pred cccccccCCcceEeCCCeEEEecCCceEEeeCCCCCcC-CCCCCCCcHHHHHHHHHHHHHHhhccccceEEeecCCcchH
Q 010213 161 LKGLNDDCEHFEAFPPGHLYSSKSGGLKRWYNPTWYSE-AIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSS 239 (515)
Q Consensus 161 ~~~l~~~~~~i~~l~pG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs 239 (515)
+++|...+++|++|+||+++.+.+++.++||++.+... ..++.++.+++++++|.+||++|+.+++|||++||||+|||
T Consensus 161 ~~al~~~~~~i~~l~pG~~~~~~~g~~~~yw~~~~~~~~~~~~~~~~~~~lr~~L~~aV~~rl~sdvpvgv~LSGGlDSS 240 (553)
T 1ct9_A 161 MKALVPVCRTIKEFPAGSYLWSQDGEIRSYYHRDWFDYDAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVLLSGGLDSS 240 (553)
T ss_dssp GGGTTTTCSEEEECCTTEEEETTTCSEEECCCCGGGSHHHHTTCCCCHHHHHHHHHHHHHHHTCCSSCEEEECCSSHHHH
T ss_pred hHHHHhhcCCEEEECCCeEEEEcCCcEEEeecCCccccccCCCHHHHHHHHHHHHHHHHHHHhcCCCceEEeCCCCccHH
Confidence 99999989999999999999887777899999876431 23455778999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccc----cccCCCceeeEEeecCCCChHHHHHHHHHHhCCCceEEEeChhHHHHHHHHHHHhhccCCC
Q 010213 240 LVASITARHLAGTKA----ARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDV 315 (515)
Q Consensus 240 ~iaa~a~~~~~~~~~----~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~~~~~~~e~~~~ 315 (515)
+|++++++...+... ...|.+++++||+++++++|..+|+++|+++|++|+++.++.+++.+.+++++++.+++++
T Consensus 241 ~iaala~~~~~~~~~~~~~~~a~~~~l~tfsig~~~~~E~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~i~~~~~~~~ 320 (553)
T 1ct9_A 241 IISAITKKYAARRVEDQERSEAWWPQLHSFAVGLPGSPDLKAAQEVANHLGTVHHEIHFTVQEGLDAIRDVIYHIETYDV 320 (553)
T ss_dssp HHHHHHHHHC----------------CEEEEEESTTCHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHHHHHCCCCH
T ss_pred HHHHHHHHhhccccccccccccccCceeEEEecCCCCcHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHHHHHHhcCCCc
Confidence 999999987632100 0001124899999999889999999999999999999999999998999999998888765
Q ss_pred CcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCccccCCCChHHHHHHHHHHHHhhcccccccccccccccCceec
Q 010213 316 TTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEAR 395 (515)
Q Consensus 316 ~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~~~~~~~~~~~~~~~~~~~~l~~~~l~r~d~~~~~~g~e~r 395 (515)
+.++..+++|++++.+++.|++|+|||+||||+||||.+|+..+....+..+..+++.+++.++++|.|+++|++|+|+|
T Consensus 321 ~~~~~~~~~~~l~~~a~~~g~~vvLsG~GaDElfgGY~~~~~~~~~~~~~~e~~~~l~~l~~~~l~r~Dr~~ma~glE~R 400 (553)
T 1ct9_A 321 TTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFGGYLYFHKAPNAKELHEETVRKLLALHMYDCARANKAMSAWGVEAR 400 (553)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEECCTTHHHHHTCSGGGGGCCSHHHHHHHHHHHHHHGGGTHHHHHHHHHHTTTCEEE
T ss_pred ccchHHHHHHHHHHHHHHcCCeEEEECCCchhcccCcHhHhhCcchhhHHHHHHHHHHHHhhhcchhhhhHHhhcCceeE
Confidence 45555678899999999999999999999999999999998888888888888888999999999999999999999999
Q ss_pred cCCCCHHHHHHHHcCCccccccCCCCCcchhHHHHHhhccCCCCCCChhhhhcccCCCCCCCchhhHHHHHHHHHHhcCh
Q 010213 396 VPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTD 475 (515)
Q Consensus 396 ~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~lLR~a~~~~~~~~lP~~i~~R~K~~f~~~~~~~~~~~~~~~~~~~l~~ 475 (515)
+||||++|||||++||+++|+.++. ..+|+|||+||++ +||++|++|+|+||+.|++..|++.+++++++++++
T Consensus 401 ~PfLD~~lve~a~~lP~~~k~~~~g--~~~K~iLR~a~~~----~LP~~i~~R~K~~f~~p~~~~w~~~l~~~~~~~~~~ 474 (553)
T 1ct9_A 401 VPFLDKKFLDVAMRINPQDKMCGNG--KMEKHILRECFEA----YLPASVAWRQKEQFSDGVGYSWIDTLKEVAAQQVSD 474 (553)
T ss_dssp CGGGCHHHHHHHHHSCGGGTCC-----CCTTHHHHHHHGG----GSCHHHHTCCCCTTCCTTCHHHHHHHHHHHHHHSCH
T ss_pred CCcCCHHHHHHHhcCCHHHhccCCC--CcchHHHHHHHHh----hCCHHHHcCCCcCCCCCccHhHHHHHHHHHHHHhCh
Confidence 9999999999999999999998631 2489999999999 999999999999999999877998899999999999
Q ss_pred HHHHhcCccCCCCCCChHHHHHHHHHHhhhCCCcc
Q 010213 476 KMVQNAQYIFPHNTPLTKEAYYYRMIFERFFPQVI 510 (515)
Q Consensus 476 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (515)
+.+++.+...+.++|.|||+|||++||+++||+..
T Consensus 475 ~~~~~~~~~~~~~~p~~~e~~~~~~~f~~~~~~~~ 509 (553)
T 1ct9_A 475 QQLETARFRFPYNTPTSKEAYLYREIFEELFPLPS 509 (553)
T ss_dssp HHHHTHHHHCCSSCCCSHHHHHHHHHHHHHCCCHH
T ss_pred HHHHhhhhhcCCCCCCchhHHHHHHHHHHHCCcHH
Confidence 99999999999999999999999999999999854
No 2
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=100.00 E-value=3e-77 Score=632.86 Aligned_cols=387 Identities=23% Similarity=0.338 Sum_probs=329.7
Q ss_pred CCceeeCC----CcEEEEEeeEEcChHHHHHHhcCCCccCCChHHHHHHHHHHHHHhhhhccccceEEEEEECCCCEEEE
Q 010213 60 DQPLYNED----KKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIV 135 (515)
Q Consensus 60 ~qP~~~~~----~~~~~~~nGei~n~~~L~~~l~~~~~~~~~D~e~i~~~~~~~G~~~~~~l~G~fa~v~~d~~~~~l~~ 135 (515)
.||+...+ ++++++|||||||+.+|+++|. +.|++.||||+|+++|++||.+++++++|+|||++||.+ ++++
T Consensus 57 ~QP~~~~~Pf~~~~~~lv~NGeIyN~~eLr~~L~-~~f~t~sDtEvil~l~~~~g~~~~~~l~G~fA~~i~d~~--~l~~ 133 (513)
T 1jgt_A 57 APDRAVARSLTGAPTTAVLAGEIYNRDELLSVLP-AGPAPEGDAELVLRLLERYDLHAFRLVNGRFATVVRTGD--RVLL 133 (513)
T ss_dssp CGGGGEEEECSSSSEEEEEEEEESCHHHHHHTSC-SSCCCSSHHHHHHHHHHHHGGGGGGTCCEEEEEEEEETT--EEEE
T ss_pred CCCcccCCcCCCCCEEEEEEEEEeCHHHHHHHhC-CCCCCCCHHHHHHHHHHHHhHHhHhhcCeeEEEEEEECC--EEEE
Confidence 68887543 7899999999999999999995 889999999999999999999999999999999999984 4999
Q ss_pred EecCCCcceeEEEEecCcEEEEEcCcccccccC----------------CcceEeCCCeEEEec--CCc--eEEeeCCCC
Q 010213 136 ARDAIGITSLYIGWGLDGSIWISSELKGLNDDC----------------EHFEAFPPGHLYSSK--SGG--LKRWYNPTW 195 (515)
Q Consensus 136 ~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~----------------~~i~~l~pG~~~~~~--~~~--~~~~~~~~~ 195 (515)
+||++|+|||||+.. ++.++||||+++|.... ++|++|+||+++.++ +++ .++||++..
T Consensus 134 aRD~~G~kPLyy~~~-~~~~~faSe~~aL~~~~~~~~~~l~~~~~~t~~~~i~~l~pG~~l~i~~~~g~~~~~~yw~~~~ 212 (513)
T 1jgt_A 134 ATDHAGSVPLYTCVA-PGEVRASTEAKALAAHRDPKGFPLADARRVAGLTGVYQVPAGAVMDIDLGSGTAVTHRTWTPGL 212 (513)
T ss_dssp EECTTCCSCCEEEEE-TTEEEEESCHHHHHTC--CCCCCCTTSEECSSCSSCEECCTTEEEEEETTTTEEEEEECCCCCC
T ss_pred EECCCCCceeEEEEe-CCEEEEcchHHHHHhccCcccccccCCCccccccceEEcCCCcEEEEEcCCCCEEEEeecCCcc
Confidence 999999999999975 78899999999998764 899999999999887 554 578998765
Q ss_pred CcCCCCCCCCcHHHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChH
Q 010213 196 YSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDL 275 (515)
Q Consensus 196 ~~~~~~~~~~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~ 275 (515)
.. ...+.++.+++++++|.++|++|+.++++++++||||+|||+|++++++.. .++++||+++++.+|.
T Consensus 213 ~~-~~~~~~~~~~~l~~~L~~aV~~rl~sd~~vgv~LSGGlDSS~vaala~~~~----------~~v~tfti~~~~~~E~ 281 (513)
T 1jgt_A 213 SR-RILPEGEAVAAVRAALEKAVAQRVTPGDTPLVVLSGGIDSSGVAACAHRAA----------GELDTVSMGTDTSNEF 281 (513)
T ss_dssp SC-BCCCHHHHHHHHHHHHHHHHHHHSCTTCCCEEECCSSHHHHHHHHHHHHHH----------SSCEEEEEECSSCCCH
T ss_pred cc-cCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCcHHHHHHHHHHHHhC----------CCceEEEcCCCCCCHH
Confidence 42 222345567899999999999999999999999999999999999999875 4789999999988999
Q ss_pred HHHHHHHHHhCCCceEEEeChhHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCccc
Q 010213 276 KYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 355 (515)
Q Consensus 276 ~~A~~va~~lg~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~ 355 (515)
.+|+++|+++|++|+++.++++++.+.+++.+++.+.+++....+.+++|++++.+ +.|++|++||+||||+|+||.+|
T Consensus 282 ~~A~~vA~~lg~~h~~i~i~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~a-~~g~~VvltG~GaDElfgGY~~~ 360 (513)
T 1jgt_A 282 REARAVVDHLRTRHREITIPTTELLAQLPYAVWASESVDPDIIEYLLPLTALYRAL-DGPERRILTGYGADIPLGGMHRE 360 (513)
T ss_dssp HHHHHHHHHHTCEEEEEECCHHHHHTTHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-CSSCCEEECCTTTHHHHTTTCCC
T ss_pred HHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHHHhCCCCcccchhHHHHHHHHHHH-HcCCCEEEeCCChhhcccCcccc
Confidence 99999999999999999999988888899988888876544444566778888777 67999999999999999999987
Q ss_pred cCCCChHHHHHHHHHHHHhhccccccccccccc----ccCceeccCCCCHHHHHHHHcCCccccccCCCCCcchhHHHHH
Q 010213 356 HKAPNKEEFHRETCHKIKALHQYDCLRANKSTS----AWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRK 431 (515)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~l~~~~l~r~d~~~~----~~g~e~r~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~lLR~ 431 (515)
+....+..+ .+++++.++++ |+++| ++|+|+|+||||++|||||++||+++|++++. +|+|||+
T Consensus 361 ---~~~~~l~~e---~l~~l~~~~ll--Dr~sm~la~a~glE~R~PfLD~~lve~a~~lP~~~k~~~~~----~K~iLR~ 428 (513)
T 1jgt_A 361 ---DRLPALDTV---LAHDMATFDGL--NEMSPVLSTLAGHWTTHPYWDREVLDLLVSLEAGLKRRHGR----DKWVLRA 428 (513)
T ss_dssp ---SCCHHHHHH---HHHHHHHCTTC--CTTCTHHHHTTTCEEECGGGSHHHHHHHHHBCHHHHEETTE----ETHHHHH
T ss_pred ---CChhhcCHH---HHHHHhhccch--hhhhhhhhhhcCcceECCCCCHHHHHHHHcCCHHHhcCCCC----CHHHHHH
Confidence 333445544 34566667777 99999 99999999999999999999999999998864 8999999
Q ss_pred hhccCCCCCCChhhhhcccCCCCCCCchhhHHHHHHHH-HHhcChHHHHh
Q 010213 432 AFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHA-EQHVTDKMVQN 480 (515)
Q Consensus 432 a~~~~~~~~lP~~i~~R~K~~f~~~~~~~~~~~~~~~~-~~~l~~~~l~~ 480 (515)
||++ +||++|++|+|+||+.|++..|+ +++++ +++++++.+++
T Consensus 429 a~~~----~lP~~i~~R~K~gf~~p~~~~~~--l~~~~~~~~~~~~~~~~ 472 (513)
T 1jgt_A 429 AMAD----ALPAETVNRPKLGVHEGSGTTSS--FSRLLLDHGVAEDRVHE 472 (513)
T ss_dssp HHTT----TSCHHHHHSCCC---------CH--HHHHHHHHCCCTTSHHH
T ss_pred HHHh----hCCHHHHhCCcCCCCCChhHHHH--HHHHHHHhhcCHHHHHH
Confidence 9999 99999999999999999987887 67888 88787766554
No 3
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=100.00 E-value=3.1e-77 Score=631.88 Aligned_cols=425 Identities=22% Similarity=0.346 Sum_probs=350.8
Q ss_pred CEEEEEeeeeecCCCCCCCceeeCCCcEEEEEeeEEcChH---HHHHHhcCCCccCCChHHHHHHHHHHHHHhhhhcccc
Q 010213 43 DFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYNHE---ALRERLTNHKFRTGSDCDVIAHLYEEYGENFVDMLDG 119 (515)
Q Consensus 43 ~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nGei~n~~---~L~~~l~~~~~~~~~D~e~i~~~~~~~G~~~~~~l~G 119 (515)
.+++||+|++|.+ ..+.||+.+.+++++++ |||||+. +|+++|.| .|.+.||+|+|+++|++||.+++++++|
T Consensus 27 ~~~igh~R~~t~~-~~~~QP~~~~~~~~~l~--GeI~N~~~~~eLr~~l~g-~f~s~sDtEvil~l~~~~g~~~l~~l~G 102 (503)
T 1q15_A 27 GEALSNGYLFIEQ-NGHYQKCEMERGTAYLI--GSLYNRTFLIGLAGVWEG-EAYLANDAELLALLFTRLGANALALAEG 102 (503)
T ss_dssp EEEETTEEEEEET-TCCEEEEECSSSEEEEE--ECCSCHHHHHHHHTTTCG-GGGGCCHHHHHHHHHHHHCGGGGGGCCS
T ss_pred ceeEeeeeEEEcC-CCCCCCcCcCCCeEEEE--EEEeCCCChHHHHHHhhC-CCCCCChHHHHHHHHHHHHHHHHHHcCE
Confidence 4789999999975 46899999888888888 9999999 99999976 8999999999999999999999999999
Q ss_pred ceEEEEEECCCCEEEEEecCCCcceeEEEEecCcE-----------------EEEEcCccccccc--------CCcceEe
Q 010213 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGS-----------------IWISSELKGLNDD--------CEHFEAF 174 (515)
Q Consensus 120 ~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~-----------------~~faSe~~~l~~~--------~~~i~~l 174 (515)
+|||++||..++ ++++||++|+|||||+.. ++. ++||||+++|... +++|++|
T Consensus 103 ~fa~~i~d~~~~-l~~aRD~~G~rPL~y~~~-~~~~~t~~l~l~~~~~~~~~~~faSE~~al~~~~~~~~~T~~~~v~~l 180 (503)
T 1q15_A 103 DFCFFIDEPNGE-LTVITESRGFSPVHVVQG-KKAWMTNSLKLVTAAEGEGALWFEEEALVCQSLMRADTYTPVKNAQRL 180 (503)
T ss_dssp SEEEEEECTTSC-EEEEECSSSSSCCEEEES-SSEEEESCHHHHHHHHCTTSSCBCCHHHHTTCSCCCTTCCSBTTEEEC
T ss_pred EEEEEEEeCCCC-EEEEECCCCCeeEEEEEe-CCceecccccccccccCCcceEEecchHHHHhccCCCCCcccCCeEEE
Confidence 999999999877 999999999999999975 666 8999999999886 8999999
Q ss_pred CCCeEEEecCCc------eEEeeCCCCCcC-CCCCCCCcHHHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHH
Q 010213 175 PPGHLYSSKSGG------LKRWYNPTWYSE-AIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITAR 247 (515)
Q Consensus 175 ~pG~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~ 247 (515)
+||+++.++.++ .++||++..... ...+.++.+++++++|.+||++|+.+++|++++||||+|||+|++++++
T Consensus 181 ~pG~~~~i~~~g~~~~~~~~~yw~~~~~~~~~~~~~~~~~~~l~~~L~~aV~~rl~sd~~v~v~LSGGlDSs~vaala~~ 260 (503)
T 1q15_A 181 KPGAVHVLTHDSEGYSFVESRTLTTPASNQLLALPREPLLALIDRYLNAPLEDLAPRFDTVGIPLSGGLDSSLVTALASR 260 (503)
T ss_dssp CSSEEEEEEECTTCCEEEEEEESCCCCCCSCBCCCHHHHHHHHHHHHHHHHHHHGGGCSEEEEECCSSHHHHHHHHHHTT
T ss_pred CCCeEEEEeCCCcccccceeeecCCcccccccCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCCHHHHHHHHHHHH
Confidence 999998875432 678998765421 1223455678999999999999999999999999999999999999887
Q ss_pred HhccccccccCCCceeeEEeecCCCChHHHHHHHHHHhCCCceEEEeChhHHHHHHHHHHHhhccCCCCcccchHHHHHH
Q 010213 248 HLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLM 327 (515)
Q Consensus 248 ~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l 327 (515)
.. .++.+||+++++.+|..+|+++|+++|++|+++.++++++.+.+++.+++.+.+++....+..++|.+
T Consensus 261 ~~----------~~~~~~t~~~~~~~E~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l 330 (503)
T 1q15_A 261 HF----------KKLNTYSIGTELSNEFEFSQQVADALGTHHQMKILSETEVINGIIESIYYNEIFDGLSAEIQSGLFNV 330 (503)
T ss_dssp TC----------SEEEEEEEEETTBCCHHHHHHHHHHHTCEEEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred hC----------CCcEEEEEeCCCccHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHHHHHhcCCCcccchhHHHHHHH
Confidence 54 47899999999889999999999999999999999999888999999988887654444556778888
Q ss_pred HHHHHhCCCeEEEeccCccccccCCccc-cCCCChHHHHHHHHHHHHhhcccccccccccccccCceeccCCCCHHHHHH
Q 010213 328 SRKIKSLGVKMVISGEGSDEIFGGYLYF-HKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINV 406 (515)
Q Consensus 328 ~~~a~~~g~~vlltG~GgDelf~Gy~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~r~d~~~~~~g~e~r~PflD~~lve~ 406 (515)
++.+ +.|++|++||+||||+|+||.+| ...+....+..+.++++. +++.|.|+++|++|+|+|+||||++||||
T Consensus 331 ~~~a-~~~~~VvltG~GaDElf~GY~~~~~~~~~~~~l~~e~~~r~~----~~L~r~Dr~~ma~glE~R~PfLD~~lve~ 405 (503)
T 1q15_A 331 YRQA-QGQVSCMLTGYGSDLLFGGILKPGAQYDNPNQLLAEQVYRTR----WTGEFATHGASCYGIDIRHPFWSHSLISL 405 (503)
T ss_dssp HHHH-BTTBSEEECCTTHHHHHTTTSCTTCCCSCHHHHHHHHHHHHH----HHSTTCCHHHHHTTCEEECTTCCHHHHHH
T ss_pred HHHH-HCCCCEEEeCCChhhhccChHHHHHhcCCHHHHhHHHHHHHH----HhhhhhhHHHHHcCCCEECCCCCHHHHHH
Confidence 8887 67899999999999999999988 445555555555555443 57889999999999999999999999999
Q ss_pred HHcCCccccccCCCCCcchhHHHHHhhccCCCCCCChhhhhcccCCCCCCCchhhHHHHHHHHHHhcChHHHHhcCccCC
Q 010213 407 AMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKMVQNAQYIFP 486 (515)
Q Consensus 407 ~~~lP~~~k~~~~~~~~~~K~lLR~a~~~~~~~~lP~~i~~R~K~~f~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~ 486 (515)
|++||+++|+.++. +|+|||+||+++ ++||++|++|+|+||+.|++..|+- ..++. .- .
T Consensus 406 a~~lP~~~k~~~~~----~K~iLR~a~~~~--~~lP~~i~~R~K~gf~~~~~~~~~~------~~~~~--------~~-~ 464 (503)
T 1q15_A 406 CHALHPDYKIFDNE----VKNILREYADSL--QLLPKDIVWRKKIGIHEGSSVNQAF------ANVLG--------ST-V 464 (503)
T ss_dssp HHTBCGGGTEETTE----ESHHHHHHHHHT--SCSCHHHHCC---------CHHHHH------HHHHT--------SC-T
T ss_pred HHhCCHHHHhCCCC----cHHHHHHHHhcC--CcCCHHHhcCCCCCCCCCcchHHHH------HHHhc--------cc-c
Confidence 99999999998875 899999999872 1599999999999999999865541 11211 00 1
Q ss_pred CCCCChHHHHHHHHHHhhhCCCccc
Q 010213 487 HNTPLTKEAYYYRMIFERFFPQVIH 511 (515)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (515)
.+ .++|+.||| +||++.||++..
T Consensus 465 ~~-~~~k~~~~y-~~~~~~~~~~~~ 487 (503)
T 1q15_A 465 DN-YQTKSRFTY-RVYQAFLRGRLS 487 (503)
T ss_dssp TC-HHHHHHHHH-HHHHHHHTTSSC
T ss_pred cC-CCchhHHHH-HHHHHHcCCCCC
Confidence 11 467755555 699999999764
No 4
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*
Probab=100.00 E-value=9.6e-36 Score=311.76 Aligned_cols=215 Identities=23% Similarity=0.372 Sum_probs=178.2
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEE---------------------------CCEEEEEeeeeec
Q 010213 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH---------------------------GDFYLAHQRLAII 54 (515)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~---------------------------~~~~l~h~rl~~~ 54 (515)
|||+|+++.+ . ....+..|+..|+|||||++|++.. +.+++||+|++|.
T Consensus 1 CGI~G~~~~~--~--~~~~~~~~l~~L~hRG~D~~Gi~~~~~~~~~~~k~~g~v~~~~~~~~l~~l~g~~~igH~R~at~ 76 (459)
T 1ao0_A 1 CGVFGIWGHE--E--APQITYYGLHSLQHRGQEGAGIVATDGEKLTAHKGQGLITEVFQNGELSKVKGKGAIGHVRYATA 76 (459)
T ss_dssp CEEEEEESCT--B--HHHHHHHHHHHTGGGCCSEEEEEEECSSCEEEEEEESCHHHHTTSSCTTTCCBSEEEEEEECCC-
T ss_pred CEEEEEECCc--c--hHHHHHHHHHHHHhcCCCcCCEEEEeCCeEEEEecCCcHhhhcchhhhhccCCCEEEEEEecCCC
Confidence 9999999764 2 2456778999999999999999876 3579999999999
Q ss_pred CCC--CCCCceee---CCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHH--------Hhhhhcccc
Q 010213 55 DPA--SGDQPLYN---EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLDG 119 (515)
Q Consensus 55 ~~~--~~~qP~~~---~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G--------~~~~~~l~G 119 (515)
|.. .++||+.. .+++++++|||+|||+.+|+++| .|+.|.+.||||+|+++|.+|| .+++++++|
T Consensus 77 g~~~~~n~qP~~~~~~~~g~~~l~hNG~I~N~~~Lr~~L~~~g~~f~~~sDsEvi~~l~~~~~~~~~~~a~~~~~~~l~G 156 (459)
T 1ao0_A 77 GGGGYENVQPLLFRSQNNGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLIKRSGHFTLKDQIKNSLSMLKG 156 (459)
T ss_dssp ---CGGGSSSEEEBCTTTCCEEEEEEEEETTHHHHHHHHHHTTCCCCSSCHHHHHHHHHHTCCCSSHHHHHHHHHTTCCE
T ss_pred CCCCccCCCCceeccCCCCcEEEEEEEEecCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcc
Confidence 864 58999986 56889999999999999999999 6899999999999999999987 789999999
Q ss_pred ceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCccccccc-CCcceEeCCCeEEEecCCc--eEEeeCCCCC
Q 010213 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGG--LKRWYNPTWY 196 (515)
Q Consensus 120 ~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~--~~~~~~~~~~ 196 (515)
+|||++||. ++++++||++|+|||||+.. ++.++||||.++|... .+.|+.|+||+++.++.++ ..+||++...
T Consensus 157 ~fa~~i~d~--~~l~~~RD~~G~rPL~~~~~-~~~~~~ASE~~al~~~~~~~i~~l~pG~~~~i~~~~~~~~~~~~~~~~ 233 (459)
T 1ao0_A 157 AYAFLIMTE--TEMIVALDPNGLRPLSIGMM-GDAYVVASETCAFDVVGATYLREVEPGEMLIINDEGMKSERFSMNINR 233 (459)
T ss_dssp EEEEEEECS--SEEEEEECTTCCSCCEEEEE-TTEEEEESSTHHHHHHTCEEEEECCTTEEEEEETTEEEEEESCSSCCC
T ss_pred ceEEEEEeC--CEEEEEECCCCCCCeEEEec-CCEEEEEECchHHhcCCCceEEEECCCEEEEEECCceEEEecCCCccc
Confidence 999999995 89999999999999999986 6789999999999875 6789999999999887665 4568865321
Q ss_pred --------cCCCCC---CCCcHHHHHHHHHHHHHHhhc
Q 010213 197 --------SEAIPS---TPYDPLVLRQAFENAVIKRLM 223 (515)
Q Consensus 197 --------~~~~~~---~~~~~~~l~~~l~~aV~~rl~ 223 (515)
....|. ..+.+.+.+..+.+.+.+.+.
T Consensus 234 ~~c~feyiyfarp~s~~~~~~v~~~r~~lg~~La~~~~ 271 (459)
T 1ao0_A 234 SICSMEYIYFSRPDSNIDGINVHSARKNLGKMLAQESA 271 (459)
T ss_dssp CEEHHHHHTTSCTTCEETTEEHHHHHHHHHHHHHHHHC
T ss_pred cccceeeeeccCCcchhccHhHHHHHHHHHHHHHHhcc
Confidence 011222 344577888888888888664
No 5
>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A*
Probab=100.00 E-value=5.7e-35 Score=280.37 Aligned_cols=179 Identities=32% Similarity=0.445 Sum_probs=158.6
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceE-EE---------------------------CCEEEEEeeeee
Q 010213 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLY-QH---------------------------GDFYLAHQRLAI 53 (515)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~-~~---------------------------~~~~l~h~rl~~ 53 (515)
|||+|+++.+.. ...+..|+..|+|||||+.|++ .. +.+++||+|++|
T Consensus 1 CGI~G~~~~~~~----~~~l~~~l~~l~~RG~D~~Gi~~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at 76 (240)
T 1xff_A 1 CGIVGAIAQRDV----AEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWAT 76 (240)
T ss_dssp CEEEEEECSSCC----HHHHHHHHHHHGGGCCSEEEEEEECTTCCEEEEEEESCHHHHHHHHHHSCCCCSEEEEEEECCS
T ss_pred CcEEEEEcCcch----HHHHHHHHHHHHhcCCCcCCEEEEecCCcEEEEEcCCcHHHHHhhhhcccCCccEEEEEEeccC
Confidence 999999986532 2567899999999999999998 52 468999999999
Q ss_pred cCC--CCCCCceeeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHHH----------hhhhcccc
Q 010213 54 IDP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYGE----------NFVDMLDG 119 (515)
Q Consensus 54 ~~~--~~~~qP~~~~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G~----------~~~~~l~G 119 (515)
.|. ..++||+.+ ++++++|||+|||+.+|+++| .|+.|.+.||||+|+++|++++. +++++++|
T Consensus 77 ~g~~~~~n~qP~~~--~~~~l~hNG~I~N~~~lr~~L~~~g~~f~~~sDsEvi~~l~~~~~~~g~~~~~ai~~~~~~l~G 154 (240)
T 1xff_A 77 HGEPSEVNAHPHVS--EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRG 154 (240)
T ss_dssp SSCSSTTTSSCEEE--TTEEEEEEEEETTHHHHHHHHHHTTCCCCSCCSHHHHHHHHHHHHHTSSCHHHHHHHHGGGCCE
T ss_pred CCCCCcccCCCccc--CCEEEEEEEEECCHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccc
Confidence 985 358999987 789999999999999999999 68999999999999999999864 78999999
Q ss_pred ceEEEEEECC-CCEEEEEecCCCcceeEEEEecCcEEEEEcCcccccccCCcceEeCCCeEEEecCCceEEe
Q 010213 120 MFSFVLLDTR-DNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLKRW 190 (515)
Q Consensus 120 ~fa~v~~d~~-~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~~~ 190 (515)
+|||++||.. .++++++||+ |||||+.. ++.++||||+++|.....++..|+||+++.++.++++.+
T Consensus 155 ~fa~~i~d~~~~~~l~~~Rd~---~PL~~~~~-~~~~~~aSE~~al~~~~~~~~~l~pG~~~~i~~~~~~~~ 222 (240)
T 1xff_A 155 AYGTVIMDSRHPDTLLAARSG---SPLVIGLG-MGENFIASDQLALLPVTRRFIFLEEGDIAEITRRSVNIF 222 (240)
T ss_dssp EEEEEEEETTCTTCEEEEEEB---SCCEEEEC-SSCEEEESSGGGTTTTCSEEEECCTTCEEEECSSCEEEE
T ss_pred ceEEEEEecCCCCEEEEEECC---CceEEEEe-CCEEEEEECHHHHHhhCCeEEEECCCEEEEEECCeEEEE
Confidence 9999999975 5899999998 99999985 678999999999998888899999999999887765544
No 6
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*
Probab=99.97 E-value=5.3e-31 Score=278.52 Aligned_cols=179 Identities=22% Similarity=0.386 Sum_probs=152.3
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEEC----------------------------CEEEEEeeeee
Q 010213 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG----------------------------DFYLAHQRLAI 53 (515)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~----------------------------~~~l~h~rl~~ 53 (515)
|||+|+++.+.. ...+..|+..|+|||||++|++..+ ++++||+|++|
T Consensus 1 CGI~G~~~~~~~----~~~l~~~l~~LqhRG~D~aGi~~~~~~~~~~~~k~~g~v~~vf~~~~~~~l~g~~~igH~R~sT 76 (504)
T 1ecf_A 1 CGIVGIAGVMPV----NQSIYDALTVLQHRGQDAAGIITIDANNCFRLRKANGLVSDVFEARHMQRLQGNMGIGHVRYPT 76 (504)
T ss_dssp CEEEEEECSSCC----HHHHHHHHHHTGGGCCSEEEEEEECTTSCEEEEEEESCHHHHCCHHHHHHCCSSEEEEEEECCB
T ss_pred CEEEEEEcChhH----HHHHHHHHHHHHhcCCCcceEEEEcCCCcEEEEecCCchhhhcCccccccCCCCEEEEEEccCc
Confidence 999999976421 3457889999999999999999763 47999999999
Q ss_pred cCCC--CCCCceeeC-CCcEEEEEeeEEcChHHHHHHh--c-CCCccCCChHHHHHHHHHHH----HH------------
Q 010213 54 IDPA--SGDQPLYNE-DKKIVVTVNGEIYNHEALRERL--T-NHKFRTGSDCDVIAHLYEEY----GE------------ 111 (515)
Q Consensus 54 ~~~~--~~~qP~~~~-~~~~~~~~nGei~n~~~L~~~l--~-~~~~~~~~D~e~i~~~~~~~----G~------------ 111 (515)
.|.. .++|||... +++++++|||+|||+.+|+++| . +..|.+.||||+|+++|.++ |.
T Consensus 77 ~G~~~~~n~QP~~~~~~~~~~l~hNG~i~N~~eLr~~L~~~g~~~f~s~sDsEvi~~l~~~~~~~~g~~~~~~~~~~~a~ 156 (504)
T 1ecf_A 77 AGSSSASEAQPFYVNSPYGITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAI 156 (504)
T ss_dssp TTBCTTSCCSCEEECSSSCEEEEEEEEETTHHHHHHHHHHHHCCCCCSSCHHHHHHHHHHHHHTTCCSSSCCHHHHHHHH
T ss_pred CCCCCccccCCeEeccCCCEEEEEeeeecCHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHhccccccccccHHHHH
Confidence 9964 589999864 3569999999999999999999 2 47899999999999999886 21
Q ss_pred -hhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEec--C--cEEEEEcCccccccc-CCcceEeCCCeEEEecCC
Q 010213 112 -NFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGL--D--GSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSG 185 (515)
Q Consensus 112 -~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~--~--~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~ 185 (515)
+++++++|+||+++|+.. ++++++||++|+|||||+... + +.++||||.++|... ++.|+.|+||+++.++.+
T Consensus 157 ~~~~~~l~G~fa~v~~~~~-~~l~a~RD~~GirPL~~g~~~~~~g~~~~~~ASE~~al~~~~~~~v~~l~PGe~v~i~~~ 235 (504)
T 1ecf_A 157 AATNRLIRGAYACVAMIIG-HGMVAFRDPNGIRPLVLGKRDIDENRTEYMVASESVALDTLGFDFLRDVAPGEAIYITEE 235 (504)
T ss_dssp HHHHHHCCEEEEEEEEETT-TEEEEEECTTCCSCCEEEEEECSSSCEEEEEESSTHHHHHHTCEEEEECCTTEEEEEETT
T ss_pred HHhhhhcCccceEEEEEcC-CeEEEEECCCCCCceEEeecccCCCceEEEEEeCchHhhccCccEEEECCCCeEEEEeCC
Confidence 578999999999999753 589999999999999999852 3 479999999999875 567999999999887643
No 7
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*
Probab=99.97 E-value=6.9e-31 Score=284.58 Aligned_cols=176 Identities=33% Similarity=0.464 Sum_probs=157.1
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEE----------------------------CCEEEEEeeeee
Q 010213 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH----------------------------GDFYLAHQRLAI 53 (515)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~----------------------------~~~~l~h~rl~~ 53 (515)
|||+|+++.+.. ...+..|+..|+|||||+.|++.. +.+++||+||+|
T Consensus 1 CGI~G~~~~~~~----~~~l~~~l~~l~~RG~D~~Gi~~~~~~~~~~~~k~~g~~~~l~~~l~~~~~~~~~~igH~R~at 76 (608)
T 2bpl_A 1 CGIVGAIAQRDV----AEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWAT 76 (608)
T ss_dssp CEEEEEECSSCC----HHHHHHHHHHHGGGCCSEEEEEEECTTCCEEEEEEESSHHHHHHHHHHSCCCCSEEEEEEECCC
T ss_pred CeEEEEEcCCch----HHHHHHHHHHHHhcCCCcCceEEEecCCcEEEEeCCCcHHHHHHHhhccCCCCCEEEEEEccCC
Confidence 999999986532 346789999999999999999976 357999999999
Q ss_pred cCCC--CCCCceeeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHH---HH-------hhhhcccc
Q 010213 54 IDPA--SGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEY---GE-------NFVDMLDG 119 (515)
Q Consensus 54 ~~~~--~~~qP~~~~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~---G~-------~~~~~l~G 119 (515)
.|.. .++||+.+ ++++++|||+|||+.+|+++| .|+.|.+.||||+|+++|++| |. +++++++|
T Consensus 77 ~g~~~~~n~qP~~~--~~~~lvhNG~I~N~~~Lr~~L~~~g~~f~s~tDtEvi~~l~~~~~~~g~~~~~av~~~~~~l~G 154 (608)
T 2bpl_A 77 HGEPSEVNAHPHVS--EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRG 154 (608)
T ss_dssp SSSCCGGGCSCEEE--TTEEEEEEECCTTHHHHHHHHHHHTCCCSCCCHHHHHHHHHHHHHTTCCCHHHHHHHHGGGCCS
T ss_pred CCCCCccCCCCccC--CCEEEEEEEEEeCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcC
Confidence 9853 58999998 789999999999999999999 689999999999999999988 73 68999999
Q ss_pred ceEEEEEECCC-CEEEEEecCCCcceeEEEEecCcEEEEEcCcccccccCCcceEeCCCeEEEecCCce
Q 010213 120 MFSFVLLDTRD-NSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGL 187 (515)
Q Consensus 120 ~fa~v~~d~~~-~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~ 187 (515)
+|||++||..+ ++++++||+ |||||+.. ++.++||||+++|....+.+..|+||+++.++.+++
T Consensus 155 ~fa~~i~d~~~~~~l~~aRd~---~PL~~g~~-~~~~~~aSe~~al~~~~~~~~~l~~G~i~~i~~~~~ 219 (608)
T 2bpl_A 155 AYGTVIMDSRHPDTLLAARSG---SPLVIGLG-MGENFIASDQLALLPVTRRFIFLEEGDIAEITRRSV 219 (608)
T ss_dssp SEEEEEEETTCTTCEEEEEEB---SCCEEEEC-SSCEEEESSGGGTTTTCCEEEECCTTCEEEECSSCE
T ss_pred ceEEEEEecCCCCEEEEEECC---CceEEEEe-CCeEEEEechHHHHhcCCeEEEECCCeEEEEECCeE
Confidence 99999999987 899999998 99999985 678999999999998888999999999988775544
No 8
>3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi}
Probab=99.93 E-value=2.4e-26 Score=223.22 Aligned_cols=142 Identities=19% Similarity=0.247 Sum_probs=109.8
Q ss_pred CEEEEEeeeeecCC--CCCCCceeeCCCcEEEEEeeEEcChHHHHHHh--cC--CCc---cCCChHHHHHHHHHHHHH--
Q 010213 43 DFYLAHQRLAIIDP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TN--HKF---RTGSDCDVIAHLYEEYGE-- 111 (515)
Q Consensus 43 ~~~l~h~rl~~~~~--~~~~qP~~~~~~~~~~~~nGei~n~~~L~~~l--~~--~~~---~~~~D~e~i~~~~~~~G~-- 111 (515)
.+++||+|++|.|. ..++|||.. ++++++|||+|+|+.+|+++| .| +.| .++||||+|+++|.++|.
T Consensus 82 ~~~igHvR~AT~g~~s~~n~qPf~~--g~~~~~HNG~I~N~~~Lr~~L~~~g~~~~f~~~~~~TDSEvi~~l~~~~~~~~ 159 (274)
T 3mdn_A 82 GLFLSHVRASTGSCISRNNCHPFAA--RRWCFMHNGQVGGFEAFRKQADMAIADEFYTYRKGSTDSEVLFLLALSEGLEH 159 (274)
T ss_dssp EEEEEEC------------CCCEEE--TTEEEEEEEEETTGGGGHHHHHHTSCHHHHTTCCSCCHHHHHHHHHHHTTTTT
T ss_pred CEEEEEEccccCCCCcccCCCCccc--CCEEEEEeeEEcCHHHHHHHHHhhCCcceecCCCCCChHHHHHHHHHHhhhcC
Confidence 36899999999985 368999987 679999999999999999999 44 334 689999999999988774
Q ss_pred -------hhhhccccc-----------eEEEEEECCCCEEEEEecC-CCcceeEEEEecC--cEEEEEcCcccccccCCc
Q 010213 112 -------NFVDMLDGM-----------FSFVLLDTRDNSFIVARDA-IGITSLYIGWGLD--GSIWISSELKGLNDDCEH 170 (515)
Q Consensus 112 -------~~~~~l~G~-----------fa~v~~d~~~~~l~~~rD~-~G~~pLyy~~~~~--~~~~faSe~~~l~~~~~~ 170 (515)
+++++++|+ |+++++|. ++|+++||+ +|++||+|+...+ +.++||||. |......
T Consensus 160 ~~~~al~~~l~~l~G~~~~~g~~~~~a~~~~~~d~--~~l~a~Rd~~~G~~Pll~~~~~~~~~~~~vASE~--l~~~~~~ 235 (274)
T 3mdn_A 160 DPHGALARAIARLEGLSRAHGTTPHMRLSAAFSDG--QTLYAARYSSDHIAPSVYYRYSHARQGWAVVSEP--LETDEGD 235 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCSSSEEEEEEEECS--SCEEEEEEESSSCCCCCEEEEETTTTEEEEESSC--C--CCSC
T ss_pred CHHHHHHHHHHHHHhHHhhcCcccCceEEEEEEcC--CEEEEEECCCCCCCCeEEEEEeCCCCEEEEEecc--cccCCce
Confidence 688999998 99999987 799999998 9999965555433 689999998 4334467
Q ss_pred ceEeCCCeEEEecCCceEEe
Q 010213 171 FEAFPPGHLYSSKSGGLKRW 190 (515)
Q Consensus 171 i~~l~pG~~~~~~~~~~~~~ 190 (515)
++.|+||+++.++.++++.+
T Consensus 236 ~~~v~pGeiv~i~~~~v~~~ 255 (274)
T 3mdn_A 236 WTELRPGRMLTIGAEGAAER 255 (274)
T ss_dssp CEECCSSEEEEEETTEEEEE
T ss_pred EEEECcCEEEEEeCCeEEEE
Confidence 99999999999887776543
No 9
>1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1
Probab=99.87 E-value=5.6e-23 Score=198.25 Aligned_cols=174 Identities=17% Similarity=0.148 Sum_probs=134.3
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCC------CCCCceEEEC-----------------------------CEE
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRG------PDWSGLYQHG-----------------------------DFY 45 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RG------pd~~g~~~~~-----------------------------~~~ 45 (515)
||||+|+++... .. +...+..|+||| +|+.|+...+ .++
T Consensus 1 MCgi~G~~~~~~-~~-----~~~gL~~Lq~RG~~~~~~~DgaGIa~~~~~~~~~~k~~g~v~~~~~~~~l~~~~l~g~~~ 74 (257)
T 1te5_A 1 MCELLGMSANVP-TD-----IVFSFTGLMQRGGGTGPHRDGWGIAFYEGRGVRLFQDPLASVDSEVARLVQRFPIKSETV 74 (257)
T ss_dssp -CCEEEEEEEEE-EE-----CEEEECCCCCCSSSSSSSBCEEEEEEEETTEEEEEEECSBSSCCHHHHHHHHSCCEEEEE
T ss_pred CCeEEEEEcCCC-cc-----HHHHHHHHHhccCCCCCCCCeEEEEEEeCCceEEEECCCccccchHHHHHhhCCccccEE
Confidence 999999997532 11 122567899999 7999987642 368
Q ss_pred EEEeeeeecCCC--CCCCceeeC--CCcEEEEEeeEEcChHHHHHHhcCCCccCCChHHHHHHHHHHHH-----------
Q 010213 46 LAHQRLAIIDPA--SGDQPLYNE--DKKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEYG----------- 110 (515)
Q Consensus 46 l~h~rl~~~~~~--~~~qP~~~~--~~~~~~~~nGei~n~~~L~~~l~~~~~~~~~D~e~i~~~~~~~G----------- 110 (515)
+||+|+++.|.. .++|||... +++++++|||.|.|+.+ +.+ ++.|.++||||+|++++.+.-
T Consensus 75 IgHvR~AT~G~~~~~NahPf~~~~~~~~~a~aHNG~i~n~~~-r~~--~~~~~s~TDSEvi~~li~~~~~~~~~~~~~~~ 151 (257)
T 1te5_A 75 IGHIRQANVGKVGLSNTHPFIRELGGRYWTFAHNGQLADFQP-KPG--FYRPVGETDSEAAFCDLLNRVRRAFPEPVPVE 151 (257)
T ss_dssp EEEEEECCCSCCSGGGCSCEEEEETTEEEEEEEESCBSSCCC-CCC--SSCCSSCCHHHHHHHHHHHHHHHHCSSCCCHH
T ss_pred EEEeecCCCCCCCcCcCCCcEecCCCCeEEEEecCcccCchh-hhc--cCCcccCCHHHHHHHHHHHHHHHhcCCCchHH
Confidence 999999999854 489999864 56799999999999998 654 356899999999999987632
Q ss_pred --Hhhhhccc------cceEEEEEECCCCEEEEEec----------CCCcceeEE-------EE---ecCcEEEEEcCcc
Q 010213 111 --ENFVDMLD------GMFSFVLLDTRDNSFIVARD----------AIGITSLYI-------GW---GLDGSIWISSELK 162 (515)
Q Consensus 111 --~~~~~~l~------G~fa~v~~d~~~~~l~~~rD----------~~G~~pLyy-------~~---~~~~~~~faSe~~ 162 (515)
.+++.++. |.|++++.|. ++|+++|| ++|.+||.. .. ..++.++||||.
T Consensus 152 a~~~al~~l~~~~~~~G~~n~~l~~g--~~l~a~rd~~L~~~~~~~p~g~rpL~~~~~~i~~g~~~~~~~~~~vvASE~- 228 (257)
T 1te5_A 152 VLLPVLISACDEYRKKGVFNALISDG--DWLFTFCSSKLAYITRRAPFGPARLKDADLTVDFHAETTPDDVVTVIATEP- 228 (257)
T ss_dssp HHHHHHHHHHHHHHTTBCCEEEEESS--SCEEEECSSCEEEEEEESSCCCEEEECSSEEEEECCCSSTTCEEEEEESSC-
T ss_pred HHHHHHHHHHHHHHhcCcEEEEEEcC--CEEEEEEcCCceEEeecCCCcccccccccceeecccccCCCCCEEEEEeCc-
Confidence 13455554 9999999998 89999999 999999964 20 123468999994
Q ss_pred cccccCCcceEeCCCeEEEecCCceE
Q 010213 163 GLNDDCEHFEAFPPGHLYSSKSGGLK 188 (515)
Q Consensus 163 ~l~~~~~~i~~l~pG~~~~~~~~~~~ 188 (515)
|. ..+.++.|+||+++.++.+.+.
T Consensus 229 -l~-~~~~wr~v~pGe~v~i~~~~~~ 252 (257)
T 1te5_A 229 -LT-DNENWTLQQSGEWVLWWGGEVL 252 (257)
T ss_dssp -SS-SSSSCEEECTTCEEEEETTEEE
T ss_pred -cC-CCCCeeEeCCCEEEEEECCEEE
Confidence 44 3568999999999998877654
No 10
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=99.58 E-value=6.6e-15 Score=167.03 Aligned_cols=159 Identities=19% Similarity=0.177 Sum_probs=123.5
Q ss_pred HHHHHHHHHHhcccCCCC----CCceEEEC-----------------------------CEEEEEeeeeecCCC--CCCC
Q 010213 17 KRVRVLELSRRLKHRGPD----WSGLYQHG-----------------------------DFYLAHQRLAIIDPA--SGDQ 61 (515)
Q Consensus 17 ~~~~~~~~~~~l~~RGpd----~~g~~~~~-----------------------------~~~l~h~rl~~~~~~--~~~q 61 (515)
....+......++||+++ +.++...+ .++++|+|++|.+.. .+.|
T Consensus 144 ~~r~ly~~r~~le~~~~~~~~~~~yi~Sls~~~~vyKGmgl~~~v~~~y~dL~d~~~~g~~aigH~RySTnt~p~w~~AQ 223 (1479)
T 1ea0_A 144 FELDLYIIRRRIEKAVKGEQINDFYICSLSARSIIYKGMFLAEQLTTFYPDLLDERFESDFAIYHQRYSTNTFPTWPLAQ 223 (1479)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSCEEEEEESSEEECCBSSCGGGHHHHCGGGGSTTCCBSEEEEEECCCSCSCCCSTTSS
T ss_pred HHHHHHHHHHHHHHhhhhccCCcEEEEEecCcEEEEecCcCHHHhhhhhhhhcccccceeEEEeeecccCCCCCCcccCC
Confidence 345666777889999853 34444322 489999999998854 4789
Q ss_pred ceeeCCCcEEEEEeeEEcChHHHHHHhc------------------C-CCccCCChHHHH---HHHHHHHH---------
Q 010213 62 PLYNEDKKIVVTVNGEIYNHEALRERLT------------------N-HKFRTGSDCDVI---AHLYEEYG--------- 110 (515)
Q Consensus 62 P~~~~~~~~~~~~nGei~n~~~L~~~l~------------------~-~~~~~~~D~e~i---~~~~~~~G--------- 110 (515)
||. +++|||||.|...+++++. + ..|.+.||||++ ++++.+.|
T Consensus 224 Pf~------~laHNGeInn~~~nr~~m~are~~~~~~~~G~~l~~~~pii~~~~SDSevld~~lelL~~~g~~l~~A~~~ 297 (1479)
T 1ea0_A 224 PFR------MLAHNGEINTVKGNVNWMKAHETRMEHPAFGTHMQDLKPVIGVGLSDSGSLDTVFEVMVRAGRTAPMVKMM 297 (1479)
T ss_dssp CCS------SEEEEECCTTHHHHHHHHHHHGGGCCCSTTGGGHHHHCCSSCTTCCHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred ccE------EEEECChhhCHHHHHHHHHHhHhhhcCchhhhhHHhcCCcCCCCCCcHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 995 3899999999999997641 1 237899999999 44433333
Q ss_pred -----------------------HhhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCccccccc
Q 010213 111 -----------------------ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD 167 (515)
Q Consensus 111 -----------------------~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~ 167 (515)
..+++.++|.|++++.|. +.++++|||.|.|||.|+...|+.+++|||..+|...
T Consensus 298 liPeaw~~~~~m~~~~~~fye~~~~~me~~dGp~slv~~dg--~~l~a~~DrnGlRPl~~g~t~d~~~v~ASE~galdi~ 375 (1479)
T 1ea0_A 298 LVPQALTSSQTTPDNHKALIQYCNSVMEPWDGPAALAMTDG--RWVVGGMDRNGLRPMRYTITTDGLIIGGSETGMVKID 375 (1479)
T ss_dssp HSCCCCC---CCCHHHHHHHHHHHHHCCCCCSSEEEEECSS--SEEEEECCTTCCSCCEEEEETTSEEEECSSSTTSCCC
T ss_pred hCchhhcccccCCHHHHHHHHHHHHhhccCCCcEEEEEEeC--CEEEEEecCCCCcceEEEEECCCEEEEEcccccccCc
Confidence 134689999999999988 8999999999999999998766789999999999654
Q ss_pred CCcc-e--EeCCCeEEEec
Q 010213 168 CEHF-E--AFPPGHLYSSK 183 (515)
Q Consensus 168 ~~~i-~--~l~pG~~~~~~ 183 (515)
...+ + +|.||+++.++
T Consensus 376 ~a~~vrkg~l~PGemv~id 394 (1479)
T 1ea0_A 376 ETQVIEKGRLGPGEMIAVD 394 (1479)
T ss_dssp GGGEEEEEECCTTCEEEEE
T ss_pred chheeeccCCCCCeEEEEE
Confidence 4333 4 89999998775
No 11
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=99.56 E-value=3e-14 Score=162.05 Aligned_cols=159 Identities=18% Similarity=0.135 Sum_probs=124.2
Q ss_pred HHHHHHHHHHhcccCCCCCCceEEEC-----------------------------CEEEEEeeeeecCCC--CCCCceee
Q 010213 17 KRVRVLELSRRLKHRGPDWSGLYQHG-----------------------------DFYLAHQRLAIIDPA--SGDQPLYN 65 (515)
Q Consensus 17 ~~~~~~~~~~~l~~RGpd~~g~~~~~-----------------------------~~~l~h~rl~~~~~~--~~~qP~~~ 65 (515)
....+......++||++++.++...+ .++++|+|++|.+.. .+.|||.
T Consensus 144 ~~r~ly~~r~~le~~~~~~~yI~S~s~~~~vyKgmgl~~~v~~~y~dL~~~~~~g~~aigH~RySTnt~p~w~~AQPf~- 222 (1520)
T 1ofd_A 144 LDRRLYIARSIIGKKLAEDFYVCSFSCRTIVYKGMVRSIILGEFYLDLKNPGYTSNFAVYHRRFSTNTMPKWPLAQPMR- 222 (1520)
T ss_dssp HHHHHHHHHHHHGGGCBTTBEEEEEESSEEEEEESSCHHHHHHHBHHHHCTTCCBSEEEEEECCCSSSCCCGGGSSCCS-
T ss_pred HHHHHHHHHHHHHhhccCCEEEEEecCcEEEEeCCccHHHHhhhhhhccccccceeEEEEEccccCCCCCCcccCCchh-
Confidence 35567777889999997655555433 489999999998864 4789995
Q ss_pred CCCcEEEEEeeEEcChHHHHHH-----------------h--cC-CCccCCChHHHHHHHHH---HHH------------
Q 010213 66 EDKKIVVTVNGEIYNHEALRER-----------------L--TN-HKFRTGSDCDVIAHLYE---EYG------------ 110 (515)
Q Consensus 66 ~~~~~~~~~nGei~n~~~L~~~-----------------l--~~-~~~~~~~D~e~i~~~~~---~~G------------ 110 (515)
+++|||||.|...+++. | .+ ..|.+.||||++.++++ +.|
T Consensus 223 -----~LaHNGeInt~~~nrnwm~aR~~~~~s~~~~g~~l~~~~p~i~~~~SDSe~ld~~lelL~~~g~~l~~A~~~liP 297 (1520)
T 1ofd_A 223 -----LLGHNGEINTLLGNINWMAAREKELEVSGWTKAELEALTPIVNQANSDSYNLDSALELLVRTGRSPLEAAMILVP 297 (1520)
T ss_dssp -----SEEEEECCTTHHHHHHHHHHHGGGCCCTTCCHHHHHHHCCSCCTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHSC
T ss_pred -----eeEecchhhcHHHHHHHHHHHHHHhcCcccchhhHHhhCCcCCCCCCcHHHHHHHHHHHHhcCCCHHHHHHHhCc
Confidence 38999999999888822 1 13 35789999999965444 333
Q ss_pred ----------------------HhhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCcccccccC
Q 010213 111 ----------------------ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDC 168 (515)
Q Consensus 111 ----------------------~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~ 168 (515)
..+++.++|.|++++.|. +.++++|||.|.|||.|+...++.+++|||..+|.-..
T Consensus 298 eaw~~~~~m~~~~~~~~fyey~~~~me~~dGpaalv~~dg--~~l~a~~DrnGlRPl~~~~t~d~~~v~ASE~galdi~~ 375 (1520)
T 1ofd_A 298 EAYKNQPALKDYPEISDFHDYYSGLQEPWDGPALLVFSDG--KIVGAGLDRNGLRPARYCITKDDYIVLGSEAGVVDLPE 375 (1520)
T ss_dssp CCCTTCGGGTTCHHHHHHHHHHTTTCCCCCSSEEEEEECS--SEEEEEECTTCCSCCEEEEETTCCEEEESSTTCSCCCG
T ss_pred chhcccccccccHHHHHHHHHHHHhcccCCCCEEEEEEeC--CEEEEEecCCCCCceEEEEeCCCEEEEEcccccccCcc
Confidence 123678999999999998 89999999999999999887567799999999996543
Q ss_pred Cc-ce--EeCCCeEEEec
Q 010213 169 EH-FE--AFPPGHLYSSK 183 (515)
Q Consensus 169 ~~-i~--~l~pG~~~~~~ 183 (515)
.. ++ +|.||+++.++
T Consensus 376 a~~vrkg~l~PGemv~id 393 (1520)
T 1ofd_A 376 VDIVEKGRLAPGQMIAVD 393 (1520)
T ss_dssp GGEEEEEECCTTCEEEEE
T ss_pred hheeeccCCCCCeEEEEE
Confidence 33 34 89999998775
No 12
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=99.11 E-value=6.7e-11 Score=114.07 Aligned_cols=133 Identities=20% Similarity=0.236 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHHHhC
Q 010213 207 PLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLG 286 (515)
Q Consensus 207 ~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg 286 (515)
.+++.+.+.+.++.. ...++.+.||||+||+++++++.+.... .++.++++.+..+.|...|+++|+.+|
T Consensus 6 ~~~~~~~l~~~i~~~--~~~~vvv~lSGGiDSs~~~~l~~~~~g~--------~~v~av~~~~~~~~~~~~a~~~a~~lg 75 (257)
T 2e18_A 6 YDKVIERILEFIREK--GNNGVVIGISGGVDSATVAYLATKALGK--------EKVLGLIMPYFENKDVEDAKLVAEKLG 75 (257)
T ss_dssp HHHHHHHHHHHHHHH--CTTCEEEECCSSHHHHHHHHHHHHHHCG--------GGEEEEECCSSCSTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh--CCCcEEEEecCCHHHHHHHHHHHHhcCC--------CcEEEEEeCCCCchHHHHHHHHHHHhC
Confidence 456667777777776 5568999999999999999999887521 368888887654478899999999999
Q ss_pred CCceEEEeChhHHHHHHHHHHHhhccCCCC---cccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 010213 287 TVHHEFHFTVQDGIDAIEEVIYHVETYDVT---TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (515)
Q Consensus 287 ~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~---~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~ 354 (515)
++|+++.+++ ..+.+.+.+.. .+... .+.....+..+.+.|.+.|+.++.||+. ||.+.||..
T Consensus 76 i~~~~i~i~~--~~~~~~~~l~~--~~~~~~~~n~~ar~r~~~l~~~A~~~g~~vl~tg~~-~e~~~Gy~t 141 (257)
T 2e18_A 76 IGYKVINIKP--IVDSFVENLEL--NLDRKGLGNIMSRTRMIMLYAHANSLGRIVLGTSNR-SEFLTGYFT 141 (257)
T ss_dssp CEEEECCCHH--HHHHHHHHHCS--CCCHHHHHHHHHHHHHHHHHHHHHHHTCEEECCCCH-HHHHHTCSC
T ss_pred CCEEEEEChH--HHHHHHHHhcc--ccccchhHHHHHHHHHHHHHHHHHHcCCEEEEcCch-hHHhcCCee
Confidence 9998877653 22222221110 00100 0111233456677788889999999985 566778743
No 13
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=99.05 E-value=6e-10 Score=104.56 Aligned_cols=117 Identities=21% Similarity=0.300 Sum_probs=74.1
Q ss_pred ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHHHHHHhCCCceEEEeCh-hHHH-
Q 010213 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTVHHEFHFTV-QDGI- 300 (515)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~va~~lg~~~~~~~~~~-~~~~- 300 (515)
..+++++||||+||+++++++.+.. .++.++++.+.. .+|.++|+++|+++|++|+++.++. .+..
T Consensus 3 ~~~v~v~lSGG~DS~~ll~ll~~~~----------~~v~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~~~~~~~~~~~~ 72 (219)
T 3bl5_A 3 KEKAIVVFSGGQDSTTCLLWALKEF----------EEVETVTFHYNQRHSQEVEVAKSIAEKLGVKNHLLDMSLLNQLAP 72 (219)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHC----------SEEEEEEEESSCTTCHHHHHHHHHHHTTCCCEEEEECGGGGGGST
T ss_pred CCCEEEEccCcHHHHHHHHHHHHcC----------CceEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEeChHHhhhcc
Confidence 4579999999999999999998753 468888886543 3688899999999999999998764 2110
Q ss_pred -----HHHHHHHHhhccCCCCcccchHHHH--HHHHHHHhCCCeEEEeccCccccccCCc
Q 010213 301 -----DAIEEVIYHVETYDVTTIRASTPMF--LMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (515)
Q Consensus 301 -----~~l~~~~~~~e~~~~~~~~~~~~~~--~l~~~a~~~g~~vlltG~GgDelf~Gy~ 353 (515)
+.+.........+. +...+....| ++.+.+++.|+++++||+++|+. ++|+
T Consensus 73 ~~l~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~a~~~g~~~i~tG~~~dd~-~~~~ 130 (219)
T 3bl5_A 73 NALTRNDIEIEVKDGELPS-TFVPGRNLVFLSFASILAYQIGARHIITGVCETDF-SGYP 130 (219)
T ss_dssp GGGC--------------C-CCCTTHHHHHHHHHHHHHHHHTCSEEECCCCC-----CCG
T ss_pred cccccccccccccccCCCC-ceeechHHHHHHHHHHHHHHcCCCEEEEecccccc-CCCC
Confidence 01111000001111 1111222233 44677888899999999999995 5664
No 14
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=99.03 E-value=4e-10 Score=109.25 Aligned_cols=129 Identities=17% Similarity=0.120 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCC--ChHHHHHHHHHHh
Q 010213 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEVADYL 285 (515)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~--~d~~~A~~va~~l 285 (515)
+.+.+.|.+.++.. ...++.+.||||+||+++++++.+..+ .++.++++.+... .|...|+++|+.+
T Consensus 10 ~~l~~~l~~~v~~~--~~~~vvv~lSGGiDSsv~~~l~~~~~~---------~~v~av~~~~~~~~~~e~~~a~~~a~~l 78 (268)
T 1xng_A 10 VYLCDFLEKEVQKR--GFKKVVYGLSGGLDSAVVGVLCQKVFK---------ENAHALLMPSSVSMPENKTDALNLCEKF 78 (268)
T ss_dssp HHHHHHHHHHHHHT--TCCCEEEECCSSHHHHHHHHHHHHHHG---------GGEEEEECCCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCEEEEccCcHHHHHHHHHHHHhCC---------CCEEEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 44555555555442 345799999999999999999988751 4788999876532 5788999999999
Q ss_pred CCCceEEEeChhHHHHHHHHHHHhhccCCCCcccc---hHHHHHHHHHHHhCCCeEEEeccCccccccCCc
Q 010213 286 GTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRA---STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (515)
Q Consensus 286 g~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~---~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~ 353 (515)
|++|+++.+++ ..+.+.+. .....+....+ ...+..+++.|.+.|+.|+.||+ .||.+.||.
T Consensus 79 gi~~~~i~i~~--~~~~~~~~---~~~~~~~~~~n~~~r~R~~~l~~~A~~~g~~vl~tg~-~~E~~~Gy~ 143 (268)
T 1xng_A 79 SIPYTEYSIAP--YDAIFSSH---FKDASLTRKGNFCARLRMAFLYDYSLKSDSLVIGTSN-KSERMLGYG 143 (268)
T ss_dssp TCCEEECCCHH--HHHHHHHH---CTTCCHHHHHHHHHHHHHHHHHHHHHHHTCEEBCCCC-HHHHHHTCS
T ss_pred CCCEEEEeChH--HHHHHHHH---hhhcCCchHHHHHHHHHHHHHHHHHHHCCCEEEECCc-HHHHhcCcc
Confidence 99998877653 22222111 11100000111 12344567778888999988875 588888885
No 15
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A
Probab=99.03 E-value=4e-10 Score=109.24 Aligned_cols=142 Identities=15% Similarity=0.115 Sum_probs=86.7
Q ss_pred cHHHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCC-CceeeEEeecCCCChHHHHHHHHHH
Q 010213 206 DPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWG-TQLHSFCVGLEGSPDLKYAKEVADY 284 (515)
Q Consensus 206 ~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~-~~i~~~t~~~~~~~d~~~A~~va~~ 284 (515)
.++++.+.|.+.|+++.. ..+.+.||||+|||++++++++....-... .+ .++.++++.+....|...|+++|++
T Consensus 21 ~i~~~~~~L~d~v~~~g~--~~vvvgLSGGvDSsv~a~La~~a~~~lg~~--~~~~~v~av~~~~~~~~d~~~A~~va~~ 96 (271)
T 1kqp_A 21 EIEDRVNFLKQYVKKTGA--KGFVLGISGGQDSTLAGRLAQLAVESIREE--GGDAQFIAVRLPHGTQQDEDDAQLALKF 96 (271)
T ss_dssp HHHHHHHHHHHHHHHHTC--CEEEEECCSSHHHHHHHHHHHHHHHHHHHT--TCCCEEEEEECCSSSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC--CCEEEECCCCHHHHHHHHHHHHHHHHhccc--CCCceEEEEEeCCCCCCCHHHHHHHHHh
Confidence 455677777788777643 356778999999999999988764210000 00 1466666654334578999999999
Q ss_pred hCC-CceEEEeChhHHHHHHHHHHHhh-ccC-CCCcccc---hHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 010213 285 LGT-VHHEFHFTVQDGIDAIEEVIYHV-ETY-DVTTIRA---STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (515)
Q Consensus 285 lg~-~~~~~~~~~~~~~~~l~~~~~~~-e~~-~~~~~~~---~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~ 354 (515)
+|+ +|+++++++ ..+.+.+.+... +.+ ......+ ...+..++..|.+.|.. ++++.+.||++.||..
T Consensus 97 lgi~~~~~i~i~~--~~~~~~~~l~~~~~~~~~~~~~~N~~aR~r~~~l~~~A~~~g~l-vl~tgn~~E~~~Gy~t 169 (271)
T 1kqp_A 97 IKPDKSWKFDIKS--TVSAFSDQYQQETGDQLTDFNKGNVKARTRMIAQYAIGGQEGLL-VLGTDHAAEAVTGFFT 169 (271)
T ss_dssp HCCSEEEECCCHH--HHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHTCE-EBCCCCHHHHTTTCSC
T ss_pred cCCCeEEEeccHH--HHHHHHHHHhhhcCCCCcchhhhhHHHHHHHHHHHHHHHHCCCE-EEECccHHHhccCCcc
Confidence 999 888877653 233333333321 211 1111111 12244555667677764 5666677999999954
No 16
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=98.96 E-value=9.8e-10 Score=118.32 Aligned_cols=138 Identities=17% Similarity=0.141 Sum_probs=95.1
Q ss_pred cHHHHHHHHHHHHHHhhccc--cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCC--ChHHHHHHH
Q 010213 206 DPLVLRQAFENAVIKRLMTD--VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEV 281 (515)
Q Consensus 206 ~~~~l~~~l~~aV~~rl~~~--~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~--~d~~~A~~v 281 (515)
..+++.+.+...++.++... ..+.+.||||+||+++++++.+.+.. .++.++++..... .|...|+++
T Consensus 305 ~~~~~~~~~~~~l~~~~~~~g~~~vvvglSGGvDSsv~a~la~~alG~--------~~v~~v~m~~~~~~~~~~~~A~~l 376 (590)
T 3n05_A 305 ADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGA--------QNVYGVSMPSKYSSDHSKGDAAEL 376 (590)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCCEEEECCSSHHHHHHHHHHHHHHCG--------GGEEEEECCCSSCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCcEEEEcCCCHHHHHHHHHHHHHhCc--------ccEEEEEECCCCCCHHHHHHHHHH
Confidence 45677777778888777543 57889999999999999999887521 4788999876543 478899999
Q ss_pred HHHhCCCceEEEeChhHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCccc
Q 010213 282 ADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 355 (515)
Q Consensus 282 a~~lg~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~ 355 (515)
|+++|++|+++++++. .+.+...+. .+......+.....+..++..|.+.|..|+.|| +.||++.||...
T Consensus 377 a~~lgi~~~~i~i~~~--~~~~~~~l~-~~~~~~~n~~ar~r~~~l~~~A~~~g~~vl~TG-n~se~~~Gy~t~ 446 (590)
T 3n05_A 377 ARRTGLNFRTVSIEPM--FDAYMASLG-LTGLAEENLQSRLRGTTLMAISNQEGHIVLAPG-NKSELAVGYSTL 446 (590)
T ss_dssp HHHHTCEEEECCSHHH--HHHHHHHHC-CCTHHHHHHHHHHHHHHHHHHHHHHTCEEBCCC-CHHHHHHTCCCS
T ss_pred HHHcCCcEEEEEChHH--HHHHHHHhc-ccchhhhHHHHHHHHHHHHHHHHhcCCEEEeCC-CHHHHhcCchhh
Confidence 9999999998876532 222211111 000000011122344556677788899999999 888999898653
No 17
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=98.94 E-value=2.8e-09 Score=98.79 Aligned_cols=109 Identities=22% Similarity=0.196 Sum_probs=73.8
Q ss_pred cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHHHhCCCceEEEeChhHHHHHHHH
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEE 305 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~~ 305 (515)
.++++++|||+||+++++++.+.. .++.++++.+...+|..+++++|+.+|++|+++.++.......++.
T Consensus 7 ~kv~v~~SGG~DS~~ll~ll~~~g----------~~v~~~~v~~~~~~~~~~~~~~a~~lgi~~~~~~~~~~~~~~~~~~ 76 (203)
T 3k32_A 7 MDVHVLFSGGKDSSLSAVILKKLG----------YNPHLITINFGVIPSYKLAEETAKILGFKHKVITLDRKIVEKAADM 76 (203)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTT----------EEEEEEEEECSSSCTTHHHHHHHHHHTCEEEEEECCTHHHHHHHHH
T ss_pred CeEEEEEECcHHHHHHHHHHHHcC----------CCeEEEEEeCCCchHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHH
Confidence 579999999999999999887642 5788888876554588999999999999999998875432222222
Q ss_pred HHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccc
Q 010213 306 VIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIF 349 (515)
Q Consensus 306 ~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf 349 (515)
... ...+. . ........+.+.+++ |+++++||+.+|+..
T Consensus 77 ~~~-~~~~~--~-~c~~~~~~~l~~~A~-g~~~i~tGh~~dD~~ 115 (203)
T 3k32_A 77 IIE-HKYPG--P-AIQYVHKTVLEILAD-EYSILADGTRRDDRV 115 (203)
T ss_dssp HHH-HSSSH--H-HHHHHHHHHHHHHTT-TCSEEECCCCTTCCS
T ss_pred HHh-cCCCc--c-HHHHHHHHHHHHHhc-CCCEEEECCCcccch
Confidence 221 11111 0 111122223333333 899999999999876
No 18
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=98.87 E-value=4.2e-09 Score=100.59 Aligned_cols=134 Identities=15% Similarity=0.180 Sum_probs=84.2
Q ss_pred cHHHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHHHHH
Q 010213 206 DPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVAD 283 (515)
Q Consensus 206 ~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~va~ 283 (515)
..+++.+.|++.|+.. ....+.+.||||+||+++++++.+.+ ....++++.... ..|...|+++|+
T Consensus 12 ~~~~l~~~l~~~v~~~--~~~~vvv~lSGGiDSsv~a~l~~~~~----------~~~~av~~~~~~~~~~~~~~a~~~a~ 79 (249)
T 3fiu_A 12 YSQKLVNWLSDSCMNY--PAEGFVIGLSGGIDSAVAASLAVKTG----------LPTTALILPSDNNQHQDMQDALELIE 79 (249)
T ss_dssp HHHHHHHHHHHHHHTT--TCSEEEEECCSSHHHHHHHHHHHHTT----------SCEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh--CCCCEEEEecCcHHHHHHHHHHHHhC----------CCCEEEEecCCCCCHHHHHHHHHHHH
Confidence 3455666666666543 23568899999999999999998865 233378876543 257889999999
Q ss_pred HhCCCceEEEeChhHHHHHHHHHHHhh-c---cCCCCcccc---hHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 010213 284 YLGTVHHEFHFTVQDGIDAIEEVIYHV-E---TYDVTTIRA---STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (515)
Q Consensus 284 ~lg~~~~~~~~~~~~~~~~l~~~~~~~-e---~~~~~~~~~---~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~ 354 (515)
++|++|+++.+++ ..+.+.+.+... + .+...+..+ ...+..+...|.+.|+.++-||+ .||.+.||..
T Consensus 80 ~lgi~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~r~R~~~l~~~A~~~g~~vl~TGn-~sE~~~G~~t 154 (249)
T 3fiu_A 80 MLNIEHYTISIQP--AYEAFLASTQSFTNLQNNRQLVIKGNAQARLRMMYLYAYAQQYNRIVIGTDN-ACEWYMGYFT 154 (249)
T ss_dssp HHTCEEEECCCHH--HHHHHHHHTGGGC------CHHHHHHHHHHHHHHHHHHHHHHHTEEEBCCCC-HHHHHHTCSC
T ss_pred HhCCCEEEEEChH--HHHHHHHHHHhhccCCCCcChhHHHHHHHHHHHHHHHHHHHHcCCEEEECCC-HHHHhcCchh
Confidence 9999998877643 223222211100 1 111000011 12234566778888999999994 5677777643
No 19
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=98.83 E-value=4.1e-09 Score=100.63 Aligned_cols=131 Identities=18% Similarity=0.196 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHhhcc--ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHHHHH
Q 010213 208 LVLRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVAD 283 (515)
Q Consensus 208 ~~l~~~l~~aV~~rl~~--~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~va~ 283 (515)
+++.+.+...++..+.. ..++.+.||||+||+++++++.+.. |.++.++++.... ..|...|+++|+
T Consensus 7 ~~~~~~l~~~l~d~v~~~g~~~vvv~lSGGiDSsv~a~l~~~~~---------g~~v~av~~~~~~~~~~~~~~a~~~a~ 77 (249)
T 3p52_A 7 QKITEKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLCKRAL---------KENVFALLMPTQISNKANLEDALRLCA 77 (249)
T ss_dssp HHHHHHHHHHHHHHHHTSSCSEEEEECCSSHHHHHHHHHHHHHH---------TTSEEEEECCSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHHHHHc---------CCcEEEEEecCCCCCHHHHHHHHHHHH
Confidence 44555555555555443 3578899999999999999998875 3578889887653 357889999999
Q ss_pred HhCCCceEEEeChhHHHHHHHHHHHhhccCCCCcccc---hHHHHHHHHHHHhCCCeEEEeccCccccccCCc
Q 010213 284 YLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRA---STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (515)
Q Consensus 284 ~lg~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~---~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~ 353 (515)
.+|++|+++.+++ ..+.+ .....++......+ ...+..+...|.+.|+.++-||+ .||++.||.
T Consensus 78 ~lgi~~~~v~i~~--~~~~~---~~~~~~~~~~~~~n~~~r~R~~~l~~~A~~~g~~vl~tgn-~se~~~g~~ 144 (249)
T 3p52_A 78 DLNLEYKIIEIQS--ILDAF---IKQSENTTLVSLGNFAARIRMSLLYDYSALKNSLVIGTSN-KSELLLGYG 144 (249)
T ss_dssp HHTCEEEECCCHH--HHHHH---HTTCSCCCHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCC-HHHHHHTCS
T ss_pred HhCCCEEEEECcH--HHHHH---HHhccccCCccHhHHHHHHHHHHHHHHHHHCCCeEEeCCC-HHHHHccch
Confidence 9999998876643 22222 11111111111111 12233566778888987666665 456555664
No 20
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=98.82 E-value=1.7e-08 Score=95.65 Aligned_cols=117 Identities=18% Similarity=0.259 Sum_probs=75.2
Q ss_pred cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCC--ChHHHHHHHHHHhCCC-ceEEEeCh-hHHHH
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEVADYLGTV-HHEFHFTV-QDGID 301 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~--~d~~~A~~va~~lg~~-~~~~~~~~-~~~~~ 301 (515)
.++.+++|||+||+++++++.+.. .++.++++.+... .|.+.|+++|+++|++ |+++.++. +++..
T Consensus 3 ~kvvv~lSGG~DS~~~l~ll~~~~----------~~v~av~~~~g~~~~~e~~~a~~~a~~lgi~~~~vi~~~~l~~~~~ 72 (232)
T 2pg3_A 3 KRAVVVFSGGQDSTTCLIQALQDY----------DDVHCITFDYGQRHRAEIEVAQELSQKLGAAAHKVLDVGLLNELAT 72 (232)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHC----------SEEEEEEEESSSSCHHHHHHHHHHHHHHTCSEEEEEECTHHHHTSH
T ss_pred CCEEEEecCcHHHHHHHHHHHHcC----------CCEEEEEEECCCCCHHHHHHHHHHHHHhCCCceEEEeChhHHHHhh
Confidence 368899999999999999998764 4677888765432 5788999999999999 99988762 22211
Q ss_pred -HHHHH---H----HhhccCCCCcccchHHH--HHHHHHHHhCCCeEEEeccCccccccCCc
Q 010213 302 -AIEEV---I----YHVETYDVTTIRASTPM--FLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (515)
Q Consensus 302 -~l~~~---~----~~~e~~~~~~~~~~~~~--~~l~~~a~~~g~~vlltG~GgDelf~Gy~ 353 (515)
.+.+. + +..+....+........ .++.+.|.+.|++++++|+.+|+.. +|+
T Consensus 73 ~~l~~~~~~v~~~~~~~~~~~~~~~~~R~~~~~~la~~~A~~~g~~~I~~G~~~~D~~-~~~ 133 (232)
T 2pg3_A 73 SSLTRDSIPVPDYDANAQGIPNTFVPGRNILFLTLASIYAYQVGAEAVITGVCETDFS-GYP 133 (232)
T ss_dssp HHHHHTTCCCCC---------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCSCSSS-CCG
T ss_pred hhcccccccccccccccCCCCCCeEechHHHHHHHHHHHHHHcCcCEEEEccCccccC-CCC
Confidence 11110 0 00011111111111112 2335677888999999999999875 454
No 21
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=98.80 E-value=7.9e-09 Score=100.11 Aligned_cols=138 Identities=12% Similarity=0.043 Sum_probs=79.3
Q ss_pred HHHHHHHhhcc---ccceEEeecCCcchHHHHHHHHHHhccccccc-cCCCceeeEEeecCCCChHHHHHHHHHHhCC-C
Q 010213 214 FENAVIKRLMT---DVPFGVLLSGGLDSSLVASITARHLAGTKAAR-QWGTQLHSFCVGLEGSPDLKYAKEVADYLGT-V 288 (515)
Q Consensus 214 l~~aV~~rl~~---~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~-~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~-~ 288 (515)
+...++..++. ...+.+.||||+||+++++++++....-+... ..+.++.++++.+....|...|+++|+.+|+ +
T Consensus 26 ~~~~L~~~l~~~g~~~~vvvglSGGvDSsv~a~L~~~a~~~lg~~~~~~~~~v~av~~~~~~~~~~~dA~~va~~lgi~~ 105 (275)
T 1wxi_A 26 SVDFLKSYLQTYPFIKSLVLGISGGQDSTLAGKLCQMAINELRLETGNESLQFIAVRLPYGVQADEQDCQDAIAFIQPDR 105 (275)
T ss_dssp HHHHHHHHHHHSTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECCSSSCTTHHHHHHHHHHHCCSE
T ss_pred HHHHHHHHHHHcCCCCCEEEECcCcHHHHHHHHHHHHHHHHhccccccccceEEEEEeCCCCccCHHHHHHHHHHcCCCe
Confidence 34444444432 23688999999999999999887642100000 0012678888775444588999999999999 8
Q ss_pred ceEEEeChhHHHHHHHHHHHhhc-cCCCCcccc---hHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 010213 289 HHEFHFTVQDGIDAIEEVIYHVE-TYDVTTIRA---STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (515)
Q Consensus 289 ~~~~~~~~~~~~~~l~~~~~~~e-~~~~~~~~~---~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~ 354 (515)
|+++++++ ..+.+.+...... ++......+ ...+..++..|.+.|..|+-|| ..+|.+.||..
T Consensus 106 ~~~i~i~~--~~~~~~~~l~~~g~~~~~~~~~N~~aR~r~~~l~~~A~~~g~lvlgTg-n~~E~~~Gy~t 172 (275)
T 1wxi_A 106 VLTVNIKG--AVLASEQALREAGIELSDFVRGNEKARERMKAQYSIAGMTSGVVVGTD-HAAEAITGFFT 172 (275)
T ss_dssp EEECCCHH--HHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCC-CHHHHTTTCSC
T ss_pred EEEEecHH--HHHHHHHHHHhcCCCCCCchhhhhhhhHHHHHHHHHHHHCCCEEEECc-cHHHHccCccc
Confidence 88877643 2333322222111 111111111 1123344556677787666555 55677888853
No 22
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=98.67 E-value=3.4e-08 Score=97.45 Aligned_cols=125 Identities=18% Similarity=0.227 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC--CCChHHHHHH-HHHHh
Q 010213 209 VLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKE-VADYL 285 (515)
Q Consensus 209 ~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~--~~~d~~~A~~-va~~l 285 (515)
.+.+...+.++..+. +.++.++||||+||+++++++.+.. |.++.++++... ...|...+++ +++++
T Consensus 5 ~~~~~~~~~ir~~v~-~~kvlvalSGGvDSsvla~ll~~~~---------g~~v~av~vd~g~~~~~e~~~~~~~~a~~l 74 (308)
T 2dpl_A 5 RFVEEKVREIRETVG-DSKAIIALSGGVDSSTAAVLAHKAI---------GDRLHAVFVNTGFLRKGEPEFVVKTFRDEF 74 (308)
T ss_dssp HHHHHHHHHHHHHHT-TSCEEEECCSSHHHHHHHHHHHHHH---------GGGEEEEEEECSCCCTTHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhC-CCCEEEEEeChHHHHHHHHHHHHhh---------CCCEEEEEEcCCCCChHHHHHHHHHHHHHc
Confidence 344445555666654 4689999999999999999998874 247888887643 2467778887 55789
Q ss_pred CCCceEEEeChhHHHHHHHHHHHhhccCCC-CcccchHHHHHHHHHHHhCCCeEEEeccCcccc
Q 010213 286 GTVHHEFHFTVQDGIDAIEEVIYHVETYDV-TTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 286 g~~~~~~~~~~~~~~~~l~~~~~~~e~~~~-~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDel 348 (515)
|++|+.+.++.. +.+.+.. ...+.. ..+........+.+.|++.|++.+++|+..|.+
T Consensus 75 gi~~~vv~~~~~-f~~~l~~----~~~pe~~~~~~~~~~~~~l~~~A~~~g~~~la~Gh~~dD~ 133 (308)
T 2dpl_A 75 GMNLHYVDAQDR-FFSALKG----VTDPEEKRKIIGRVFIEVFEEVAKKIGAEYLIQGTIAPDW 133 (308)
T ss_dssp CCEEEEEECHHH-HHHHTTT----CCCHHHHHHHHHHHHHHHHHHHHHHHTCSEEECCCCCC--
T ss_pred CCcEEEEECCHH-HHHhhhC----CCCHHHHHHHHHHHHHHHHHHHHHHcCcCEEEECCCCccc
Confidence 999999886532 1221110 000000 000001122345667788899999999998854
No 23
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=98.67 E-value=3.5e-08 Score=99.92 Aligned_cols=114 Identities=19% Similarity=0.126 Sum_probs=76.4
Q ss_pred ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC----------CChHHHHHHHHHHhCCCceEEEe
Q 010213 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG----------SPDLKYAKEVADYLGTVHHEFHF 294 (515)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~----------~~d~~~A~~va~~lg~~~~~~~~ 294 (515)
..+|.+.+|||+||+++++++.+.. .++.++++.... ..|...|+++|+.+|++|+++.+
T Consensus 9 ~~kVlVa~SGGvDSsv~a~lL~~~G----------~~V~~v~~~~~~~~~~~~~c~~~~d~~~a~~va~~lGIp~~vv~~ 78 (376)
T 2hma_A 9 KTRVVVGMSGGVDSSVTALLLKEQG----------YDVIGIFMKNWDDTDENGVCTATEDYKDVVAVADQIGIPYYSVNF 78 (376)
T ss_dssp GSEEEEECCSSHHHHHHHHHHHHTT----------CEEEEEEEECCCCCC----CHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCeEEEEEeCHHHHHHHHHHHHHcC----------CcEEEEEEECCCcccccccCCCHHHHHHHHHHHHHhCCcEEEEeC
Confidence 3579999999999999999998753 578888875431 13678899999999999999987
Q ss_pred ChhHHHHH-HHHHH---HhhccCCCCcccchHH-HHHHHHHHHhCCCeEEEeccCccccc
Q 010213 295 TVQDGIDA-IEEVI---YHVETYDVTTIRASTP-MFLMSRKIKSLGVKMVISGEGSDEIF 349 (515)
Q Consensus 295 ~~~~~~~~-l~~~~---~~~e~~~~~~~~~~~~-~~~l~~~a~~~g~~vlltG~GgDelf 349 (515)
+.+ +.+. +...+ ....+++++..++... +..+.+.|.+.|++.+.||+.+|...
T Consensus 79 ~~~-~~~~v~~~~l~~y~~G~tpnpc~~C~r~ik~~~l~~~A~~~G~d~IatGH~a~d~~ 137 (376)
T 2hma_A 79 EKE-YWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGADYVATGHYARVAR 137 (376)
T ss_dssp HHH-HHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHTTTCSEEECCCSEEEEE
T ss_pred hHH-HHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHhCCCCEEEECcchhhhh
Confidence 643 2221 11111 1112333221111111 23456778889999999999999864
No 24
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=98.66 E-value=1e-07 Score=94.49 Aligned_cols=126 Identities=10% Similarity=0.047 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHh--hccccceEEeecCCcchHHHHHHHHHHhccccccccCCCc-eeeEEeecCC----CChHHHHHH
Q 010213 208 LVLRQAFENAVIKR--LMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQ-LHSFCVGLEG----SPDLKYAKE 280 (515)
Q Consensus 208 ~~l~~~l~~aV~~r--l~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~-i~~~t~~~~~----~~d~~~A~~ 280 (515)
..+.+.+.++++.. +....++.+.+|||.||++++.++.+.... ++.+ +.++++.... ..|..++++
T Consensus 5 ~~~~~~~~~~i~~~~l~~~~~~vlva~SGG~DS~~Ll~ll~~~~~~------~g~~~v~av~vd~g~r~~s~~~~~~v~~ 78 (317)
T 1wy5_A 5 SRVIRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNY------FSLKEVALAHFNHMLRESAERDEEFCKE 78 (317)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECCSSHHHHHHHHHHHHSTTT------TTCSEEEEEEEECCSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEEecchHHHHHHHHHHHHHHHH------cCCCEEEEEEEECCCCcccHHHHHHHHH
Confidence 34666777788775 456678999999999999999999875321 1346 7777775432 136788999
Q ss_pred HHHHhCCCceEEEeChhHHHHHHHHHHHhhccCCCCcccchHHHH-HHHHHHHhCCCeEEEeccCcccc
Q 010213 281 VADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 281 va~~lg~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~-~l~~~a~~~g~~vlltG~GgDel 348 (515)
+|+.+|++++++.++...+... . .... ...+....| .+.+.+++.|+++++||+.+|+.
T Consensus 79 ~a~~lgi~~~v~~~~~~~~~~~-------~-~~~~-e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~dD~ 138 (317)
T 1wy5_A 79 FAKERNMKIFVGKEDVRAFAKE-------N-RMSL-EEAGRFLRYKFLKEILESEGFDCIATAHHLNDL 138 (317)
T ss_dssp HHHHHTCCEEEEECCHHHHHHH-------T-TCCH-HHHHHHHHHHHHHHHHHHTTCSEEECCCCHHHH
T ss_pred HHHHcCCcEEEEEEechhhhcc-------C-CCCH-HHHHHHHHHHHHHHHHHHcCCCEEEEeCchhHH
Confidence 9999999999988765432111 0 0110 000111223 45677888999999999999863
No 25
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=98.64 E-value=1e-07 Score=96.60 Aligned_cols=109 Identities=16% Similarity=0.096 Sum_probs=74.2
Q ss_pred cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHHHhCC-CceEEEeChhHHHHH-H
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGT-VHHEFHFTVQDGIDA-I 303 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~-~~~~~~~~~~~~~~~-l 303 (515)
.+|.+++|||+|||++++++.+.. ..+.++++......|.+.|+++|+++|+ +|+++++. +++.+. +
T Consensus 15 ~KVVVA~SGGlDSSv~a~~Lke~G----------~eViavt~d~Gq~~Ele~A~~vA~~lGi~~~~VvDl~-eef~~~v~ 83 (421)
T 1vl2_A 15 EKVVLAYSGGLDTSVILKWLCEKG----------FDVIAYVANVGQKDDFVAIKEKALKTGASKVYVEDLR-REFVTDYI 83 (421)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHTT----------CEEEEEEEESSCCCCHHHHHHHHHHHTCSEEEEEECH-HHHHHHTH
T ss_pred CCEEEEeCCcHHHHHHHHHHHHCC----------CeEEEEEEEcCCHHHHHHHHHHHHHcCCceEEEEecH-HHHHHhhh
Confidence 468999999999999999998763 6788999876555799999999999999 88888874 333332 1
Q ss_pred HHHHHhhcc----CCCCcc-cchHHHHHHHHHHHhCCCeEEEeccCc
Q 010213 304 EEVIYHVET----YDVTTI-RASTPMFLMSRKIKSLGVKMVISGEGS 345 (515)
Q Consensus 304 ~~~~~~~e~----~~~~~~-~~~~~~~~l~~~a~~~g~~vlltG~Gg 345 (515)
...+..... +..... +.....-.+.+.|.+.|++.+.+|..+
T Consensus 84 ~p~i~~na~yeg~Y~~g~~l~Rp~i~~~l~~~A~~~Gad~IA~G~~~ 130 (421)
T 1vl2_A 84 FTALLGNAMYEGRYLLGTAIARPLIAKRQVEIAEKEGAQYVAHGATG 130 (421)
T ss_dssp HHHHTTTCCBTTTBCCHHHHHHHHHHHHHHHHHHHHTCSEEECCCCT
T ss_pred hHHHhcCCcccCceeCCCcccHHHHHHHHHHHHHHcCCCEEEECCee
Confidence 112211001 111000 111112345677888999999999987
No 26
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=98.64 E-value=1.3e-07 Score=96.45 Aligned_cols=111 Identities=16% Similarity=0.144 Sum_probs=74.5
Q ss_pred cccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHHHhCCC-ceEEEeChhHHHHH
Q 010213 224 TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTV-HHEFHFTVQDGIDA 302 (515)
Q Consensus 224 ~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~~-~~~~~~~~~~~~~~ 302 (515)
+..+|++++|||+||++++.++.+.. .++.++++.+...+|.+.|+++|+.+|++ ++++.++ +++.+.
T Consensus 4 ~~~kVvvalSGGlDSsvll~lL~e~G----------~eV~av~vd~g~~~e~e~a~~~A~~lGi~~~~vvd~~-~ef~~~ 72 (413)
T 2nz2_A 4 SKGSVVLAYSGGLDTSCILVWLKEQG----------YDVIAYLANIGQKEDFEEARKKALKLGAKKVFIEDVS-REFVEE 72 (413)
T ss_dssp -CEEEEEECCSSHHHHHHHHHHHHTT----------EEEEEEEEESSCCCCHHHHHHHHHHHTCSEEEEEECH-HHHHHH
T ss_pred CCCeEEEEEcChHHHHHHHHHHHHcC----------CEEEEEEEECCcHHHHHHHHHHHHHhCCCEEEEEeCh-HHHHHH
Confidence 34679999999999999999998752 57889998776668899999999999998 6666664 333322
Q ss_pred -HHHHHHhhccCCCC-----cccchHHHHHHHHHHHhCCCeEEEeccCc
Q 010213 303 -IEEVIYHVETYDVT-----TIRASTPMFLMSRKIKSLGVKMVISGEGS 345 (515)
Q Consensus 303 -l~~~~~~~e~~~~~-----~~~~~~~~~~l~~~a~~~g~~vlltG~Gg 345 (515)
+...+.....+... ..........+.+.|++.|++++.+|+.+
T Consensus 73 ~~~~~i~~~a~~e~~y~~g~~~aRp~i~~~l~~~A~~~Ga~~IatGh~~ 121 (413)
T 2nz2_A 73 FIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG 121 (413)
T ss_dssp THHHHHHTTCCBTTTBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCT
T ss_pred HHHHHHHhCcccccccccccccchHHHHHHHHHHHHHcCCCEEEECCcC
Confidence 21222211111100 00011123355677888899999999988
No 27
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=98.63 E-value=1.4e-07 Score=96.05 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=74.1
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHHHhCC-CceEEEeChhHHHHHH-H
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGT-VHHEFHFTVQDGIDAI-E 304 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~-~~~~~~~~~~~~~~~l-~ 304 (515)
++++++|||+||++++.++.+.. +..+.++++......|.+.++++|+.+|+ +++++.+.. ++.+.+ .
T Consensus 2 kVvva~SGG~DSsvll~ll~~~~---------g~~V~av~vd~g~~~e~e~a~~~A~~lGi~~~~vvd~~~-ef~~~~~~ 71 (400)
T 1kor_A 2 KIVLAYSGGLDTSIILKWLKETY---------RAEVIAFTADIGQGEEVEEAREKALRTGASKAIALDLKE-EFVRDFVF 71 (400)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHH---------TCEEEEEEEESSCSSCHHHHHHHHHHHTCSEEEEEECHH-HHHHHTHH
T ss_pred cEEEEEeChHHHHHHHHHHHHhh---------CCcEEEEEEeCCCHHHHHHHHHHHHHhCCCeEEEEeCcH-HHHHHhhH
Confidence 58899999999999999998764 25788888876556789999999999999 677777642 333221 1
Q ss_pred HHHHhhcc----CCCCc-ccchHHHHHHHHHHHhCCCeEEEeccCcc
Q 010213 305 EVIYHVET----YDVTT-IRASTPMFLMSRKIKSLGVKMVISGEGSD 346 (515)
Q Consensus 305 ~~~~~~e~----~~~~~-~~~~~~~~~l~~~a~~~g~~vlltG~GgD 346 (515)
..+..... +.... .........+.+.|++.|++++++|+.+|
T Consensus 72 ~~i~~~~~~e~~y~~g~~~~R~~~~~~L~~~A~~~G~~~IatG~~~d 118 (400)
T 1kor_A 72 PMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGK 118 (400)
T ss_dssp HHHHTTCCBTTTBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCTT
T ss_pred HHHHcCCccccccccCCccchHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 22221111 11100 01111234566778889999999999996
No 28
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=98.54 E-value=1.4e-07 Score=95.56 Aligned_cols=113 Identities=21% Similarity=0.193 Sum_probs=74.3
Q ss_pred ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC----------CChHHHHHHHHHHhCCCceEEEe
Q 010213 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG----------SPDLKYAKEVADYLGTVHHEFHF 294 (515)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~----------~~d~~~A~~va~~lg~~~~~~~~ 294 (515)
..+|.+.+|||+||+++++++.+.. .++.++++.... ..|...|+++|+.+|++++++.+
T Consensus 17 ~~kVvVa~SGGvDSsv~a~lL~~~G----------~~V~~v~~~~~~~~~~~~~~~s~~d~~~a~~va~~LGIp~~vvd~ 86 (380)
T 2der_A 17 AKKVIVGMSGGVDSSVSAWLLQQQG----------YQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIELHTVNF 86 (380)
T ss_dssp CCEEEEECCSCSTTHHHHHHHHTTC----------CEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCEEEEEEEChHHHHHHHHHHHHcC----------CeEEEEEEEcCccccccCCCCCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 4578999999999999999998753 578888875421 13678899999999999999987
Q ss_pred ChhHHHHHH-HHHHH---hhccCCCCcccchH-HHHHHHHHHHh-CCCeEEEeccCcccc
Q 010213 295 TVQDGIDAI-EEVIY---HVETYDVTTIRAST-PMFLMSRKIKS-LGVKMVISGEGSDEI 348 (515)
Q Consensus 295 ~~~~~~~~l-~~~~~---~~e~~~~~~~~~~~-~~~~l~~~a~~-~g~~vlltG~GgDel 348 (515)
+.+ +.+.+ ...+. ...+++++..++.. -+..+.+.|.+ .|++.+.||+.+|..
T Consensus 87 ~~~-f~~~v~~~~~~ey~~G~tpnpc~~Cnr~ik~~~l~~~A~~~~Gad~IatGH~a~d~ 145 (380)
T 2der_A 87 AAE-YWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRA 145 (380)
T ss_dssp HHH-HHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSCEEE
T ss_pred cHH-HHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhcCCCEEEEccccccc
Confidence 542 22211 11111 11223321111111 11245566777 899999999999864
No 29
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0
Probab=98.51 E-value=9.1e-08 Score=92.41 Aligned_cols=141 Identities=11% Similarity=0.094 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhcccccc-ccCCCceeeEEeecCCCChHHHHHHHHHHhCC
Q 010213 209 VLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAA-RQWGTQLHSFCVGLEGSPDLKYAKEVADYLGT 287 (515)
Q Consensus 209 ~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~-~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~ 287 (515)
.+.+.|.+.+++. ....+.+.||||+||+++++++++....-.+. ...+.++.++++.+....+...|+++|+.+|+
T Consensus 26 ~~v~~L~d~l~~~--g~~~vvvglSGGvDSal~a~l~~~A~~~Lg~~~~~~~~~v~av~~p~~~~~~~~~A~~~a~~lgi 103 (279)
T 3q4g_A 26 RRVAFIKRKLTEA--RYKSLVLGISGGVDSTTCGRLAQLAVEELNQQHNTTEYQFIAVRLPYGEQKDEDEAQLALSFIRP 103 (279)
T ss_dssp HHHHHHHHHHHHH--TCCEEEEECCSSHHHHHHHHHHHHHHHHHHHHTTCSCCEEEEEECCSSSCSCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHc--CCCCEEEEccCCHHHHHHHHHHHHHHHHhCcccccCCceEEEEEecCCChHHHHHHHHHHHHhCC
Confidence 3334444444432 12467889999999999999876542100000 00013577788776545678999999999999
Q ss_pred -CceEEEeChhHHHHHHHH----HHH-hh-----ccCCCC---cccchHHHHHHHHHHHhCCCeEEEeccCccccccCCc
Q 010213 288 -VHHEFHFTVQDGIDAIEE----VIY-HV-----ETYDVT---TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (515)
Q Consensus 288 -~~~~~~~~~~~~~~~l~~----~~~-~~-----e~~~~~---~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~ 353 (515)
+|+++++++ ..+.+.. ... .. ..+... .+.....+-.++..|.+.|.-|+=||+ .+|++.||.
T Consensus 104 ~~~~~i~i~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~NiqaR~R~~~Ly~~A~~~g~lVlgTgn-~sE~~~Gy~ 180 (279)
T 3q4g_A 104 THSVSVNIKA--GVDGLHAASHHALANTGLIPSDPAKVDFIKGNVKARARMVAQYEIAGYVGGLVLGTDH-SAENITGFY 180 (279)
T ss_dssp SEEEECCCHH--HHHHHHHHHHHHHHHHTCSCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHTEEEBCCCC-HHHHHHTCS
T ss_pred CeEEEEECHH--HHHHHHHHHHHHhhhhcccccCCCcccchhhhHHHHHHHHHHHHHHHHCCCEEecCcc-HHhhhccch
Confidence 788877643 2332221 111 00 001110 111122344566667777875555554 457777876
Q ss_pred c
Q 010213 354 Y 354 (515)
Q Consensus 354 ~ 354 (515)
.
T Consensus 181 T 181 (279)
T 3q4g_A 181 T 181 (279)
T ss_dssp C
T ss_pred h
Confidence 5
No 30
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*
Probab=98.47 E-value=6.3e-08 Score=105.46 Aligned_cols=141 Identities=17% Similarity=0.101 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHhhccc--cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCC--ChHHHHHHHHH
Q 010213 208 LVLRQAFENAVIKRLMTD--VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEVAD 283 (515)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~--~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~--~d~~~A~~va~ 283 (515)
+++.+.+...++.+++.. ..+.+.||||+||++.+.++++....-.. .+.++.++++..... .+...|+++|+
T Consensus 342 ~~~~~~~~~~l~~~l~~~g~~~vvvglSGGvDSsvaa~l~~~a~~~lg~---~~~~v~~v~m~~~~~~~~~~~~A~~la~ 418 (680)
T 3sdb_A 342 YEAYNIQVSGLEQRLRALDYPKVVIGVSGGLDSTHALIVATHAMDREGR---PRSDILAFALPGFATGEHTKNNAIKLAR 418 (680)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCEEEEECCSSHHHHHHHHHHHHHHHHTTC---CGGGEEEEECCC--------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEEecCCccHHHHHHHHHHHHHHhCC---CCceEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456667777777777544 46889999999999866666554310000 004688888865433 46778999999
Q ss_pred HhCCCceEEEeChhHHHHHHHHHHHh----hccCCCCc---ccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 010213 284 YLGTVHHEFHFTVQDGIDAIEEVIYH----VETYDVTT---IRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (515)
Q Consensus 284 ~lg~~~~~~~~~~~~~~~~l~~~~~~----~e~~~~~~---~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~ 354 (515)
.+|++|+++++++ ..+...+.+.. .+...... +.....+..++..+.+.|.-|+-|| ..+|++.||..
T Consensus 419 ~lgi~~~~i~i~~--~~~~~~~~l~~~~~~~~~~~~~~~~N~~ar~R~~~l~~~A~~~g~lvlgTg-n~sE~~~Gy~T 493 (680)
T 3sdb_A 419 ALGVTFSEIDIGD--TARLMLHTIGHPYSVGEKVYDVTFENVQAGLRTDYLFRIANQRGGIVLGTG-DLSELALGWST 493 (680)
T ss_dssp HHTCEEEECCCHH--HHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHHHTEEEEECC-CHHHHHHTCSC
T ss_pred HcCCCEEEEECHH--HHHHHHHHhchhhcCCCCCcchhHHHhhHHHHHHHHHHHHHHcCCEEEeCC-cHHhHhcCeee
Confidence 9999998877653 22222111100 00001001 1111222344555666676555555 45677778854
No 31
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=98.37 E-value=5.6e-07 Score=92.23 Aligned_cols=112 Identities=17% Similarity=0.085 Sum_probs=74.0
Q ss_pred hccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHHHHHHhCC-CceEEEeChhH
Q 010213 222 LMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGT-VHHEFHFTVQD 298 (515)
Q Consensus 222 l~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~va~~lg~-~~~~~~~~~~~ 298 (515)
+....+|.+++|||+||++++.++.+.. ..+.++++.... ..|.+.|+++|+.+|+ +|+++.+. ++
T Consensus 7 l~~~~KVvVA~SGGlDSSvll~~L~e~G----------~eViavtvd~Gq~~~~ele~a~~~A~~lGi~~~~vvD~~-ee 75 (455)
T 1k92_A 7 LPVGQRIGIAFSGGLDTSAALLWMRQKG----------AVPYAYTANLGQPDEEDYDAIPRRAMEYGAENARLIDCR-KQ 75 (455)
T ss_dssp CCTTSEEEEECCSSHHHHHHHHHHHHTT----------CEEEEEEEECCCTTCSCTTHHHHHHHHHTCSEEEEEECH-HH
T ss_pred hcCCCeEEEEEcChHHHHHHHHHHHHcC----------CEEEEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEeCh-HH
Confidence 4456689999999999999999998752 578888876543 3588999999999999 78888874 33
Q ss_pred HHHHHHHHHHhhccC--CCC-cccchH------HHHHHHHHHHhCCCeEEEeccC
Q 010213 299 GIDAIEEVIYHVETY--DVT-TIRAST------PMFLMSRKIKSLGVKMVISGEG 344 (515)
Q Consensus 299 ~~~~l~~~~~~~e~~--~~~-~~~~~~------~~~~l~~~a~~~g~~vlltG~G 344 (515)
+.+.+-..+.....+ ... +..... ..-.+.+.|++.|++.+.+|+.
T Consensus 76 f~~~v~p~i~~na~y~~eg~rcY~l~t~~aRp~i~~~l~e~A~e~Gad~IAtGht 130 (455)
T 1k92_A 76 LVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGST 130 (455)
T ss_dssp HHHHHHHHHHHTCCCCEETTEECCCHHHHHHHHHHHHHHHHHHHTTCCEEECCCC
T ss_pred HHHHhHHHHHcCCcccccCceecccCCcchHHHHHHHHHHHHHHcCCCEEEECCc
Confidence 332211222211111 000 001111 1234567788899999999995
No 32
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=98.32 E-value=1.8e-06 Score=90.03 Aligned_cols=120 Identities=12% Similarity=0.037 Sum_probs=78.2
Q ss_pred HHHHHHHh--hccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCC-----ChHHHHHHHHHHhC
Q 010213 214 FENAVIKR--LMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS-----PDLKYAKEVADYLG 286 (515)
Q Consensus 214 l~~aV~~r--l~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~-----~d~~~A~~va~~lg 286 (515)
+.+.+++. +....++.|++|||.||++++.++.+..... +.++.++++..... .|..+++++|+.+|
T Consensus 5 v~~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~------~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lg 78 (464)
T 3a2k_A 5 VRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDEW------KLQVIAAHVDHMFRGRESEEEMEFVKRFCVERR 78 (464)
T ss_dssp HHHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHHHTT------TCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHHHHHHHc------CCeEEEEEEECCCCccccHHHHHHHHHHHHHcC
Confidence 44455543 4556789999999999999999998754221 35677777754322 36678999999999
Q ss_pred CCceEEEeChhHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccc
Q 010213 287 TVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (515)
Q Consensus 287 ~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDe 347 (515)
++++.+.++...+.+. ...............++.+.+.+.|+++++||+-+|.
T Consensus 79 i~~~v~~~~~~~~~~~--------~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~dD 131 (464)
T 3a2k_A 79 ILCETAQIDVPAFQRS--------AGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHGDD 131 (464)
T ss_dssp CEEEEEECCCHHHHTT--------TTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCHHH
T ss_pred CcEEEEEechhhhhhc--------cCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCChHH
Confidence 9999988764321110 0011000000111234556778889999999999885
No 33
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0
Probab=98.31 E-value=4.4e-07 Score=87.66 Aligned_cols=134 Identities=16% Similarity=0.126 Sum_probs=76.2
Q ss_pred HHHHHHHHHhhcc--ccceEEeecCCcchHHHHHHHHHH---hccccccccCCC--ceeeEEeecCCCChHHHHHHHHHH
Q 010213 212 QAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASITARH---LAGTKAARQWGT--QLHSFCVGLEGSPDLKYAKEVADY 284 (515)
Q Consensus 212 ~~l~~aV~~rl~~--~~~v~v~LSGGlDSs~iaa~a~~~---~~~~~~~~~~~~--~i~~~t~~~~~~~d~~~A~~va~~ 284 (515)
+.+...++.++.. ...+.+.||||+||+++++++++. +..+ +. .+.++++.+....|...|+++|+.
T Consensus 31 ~~~v~~L~d~l~~~g~~~vvvglSGGiDSal~a~La~~A~daLG~~------~~~~~viav~~p~~~~~~~~dA~~~a~~ 104 (285)
T 3dpi_A 31 ERRIGFVADYLRTAGLRACVLGISGGIDSSTAGRLAQLAVERLRAS------GYDARFVAMRLPYGAQHDEADARRALAF 104 (285)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHT------TCCCEEEEEECCSCC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcEEEEccCChhHHHHHHHHHHHHHHhccc------CcccEEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3334556666543 246889999999999998776653 2211 12 466777655433567889999999
Q ss_pred hC-CCceEEEeChhHHHHHHHHHHHhh-ccCC--------CCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 010213 285 LG-TVHHEFHFTVQDGIDAIEEVIYHV-ETYD--------VTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (515)
Q Consensus 285 lg-~~~~~~~~~~~~~~~~l~~~~~~~-e~~~--------~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~ 354 (515)
+| ++|+++++++ ..+.+.+.+... .++. ..++.....+-.++..|.+.|.-|+-||+-+ |++.||..
T Consensus 105 lg~i~~~~i~i~~--~~~~~~~~l~~~g~~~~~~~~~~~~~~NiqaR~Rm~~L~~~A~~~g~lVlgTgn~s-E~~~Gy~T 181 (285)
T 3dpi_A 105 VRADETLTVDVKP--AADAMLAALAAGGLAYLDHAQQDFVLGNIKARERMIAQYAVAGARNGVVIGTDHAA-ESVMGFFT 181 (285)
T ss_dssp HCCSEEEECCCHH--HHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCCHH-HHHHHHHH
T ss_pred cCCCcEEEEEChH--HHHHHHHHHHhcCccccccCCCchhhhhHHHHHHHHHHHHHHHHCCCEEEeCccHH-hhhCCccc
Confidence 99 6888877643 233322222110 0110 0011122334456677788888666676554 56666644
No 34
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=98.25 E-value=2e-06 Score=91.11 Aligned_cols=123 Identities=17% Similarity=0.148 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeec--CCCChHHHHHH-HHHHh
Q 010213 209 VLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL--EGSPDLKYAKE-VADYL 285 (515)
Q Consensus 209 ~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~--~~~~d~~~A~~-va~~l 285 (515)
.+.+.+.+.++..+.. .++.+.||||+||+++++++.+.. |.++.++++.. ....|...+.+ +|+++
T Consensus 215 ~~~~~~i~~i~~~v~~-~kvlvalSGGvDSsvla~ll~~~~---------G~~v~av~vd~g~~~~~e~~~~~~~~a~~l 284 (527)
T 3tqi_A 215 HIIEDSIRDIQEKVGK-EQVIVGLSGGVDSAVTATLVHKAI---------GDQLVCVLVDTGLLRLNEVDEVLNVFQKHL 284 (527)
T ss_dssp HHHHHHHHHHHHHHTT-SCEEEECTTTHHHHHHHHHHHHHH---------GGGEEEEEECCSCSCTTHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHhcCC-CeEEEEEecCcCHHHHHHHHHHHh---------CCeEEEEEeccCCCChhHHHHHHHHHHHHc
Confidence 4444444556665544 679999999999999999998874 25788888743 33467777765 99999
Q ss_pred CCCceEEEeChhHHHHHHHHHHHhhccCCCCcc-cc---hHHHHHHHHHHHhCCCeEEEeccCccccc
Q 010213 286 GTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTI-RA---STPMFLMSRKIKSLGVKMVISGEGSDEIF 349 (515)
Q Consensus 286 g~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~-~~---~~~~~~l~~~a~~~g~~vlltG~GgDelf 349 (515)
|++++.+.++.. +.+. ......+.. +. ......+.+.|++.|++.+++|+..|.+.
T Consensus 285 gi~~~vv~~~~~-~~~~-------l~g~~~~~~~r~~~~~~~~~~~~~~A~~~g~~~la~Gh~~dD~~ 344 (527)
T 3tqi_A 285 GAKVICVDAKDR-FMKA-------LKGISDPEEKRKIAGEQFIRVFEEQAKKLNVKWLGQGTIYPDVI 344 (527)
T ss_dssp CCEEEEECCHHH-HHSS-------SSSCCCHHHHHHHHHHHHHHHHHHTTTTTTCCEEECCCCHHHHH
T ss_pred CCcEEEEeChHH-HHHh-------hcCCCChhhhhhhhHHHHHHHHHHHHHHcCCCEEEccccCCccc
Confidence 999988765422 1110 110000000 00 01112334667788999999999888764
No 35
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=98.24 E-value=1.6e-06 Score=91.73 Aligned_cols=125 Identities=17% Similarity=0.121 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHH-HHH
Q 010213 207 PLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKE-VAD 283 (515)
Q Consensus 207 ~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~-va~ 283 (515)
.+.+.+.+.+.++..+.. .++.+.||||+||+++++++++.. |.++.++++.... ..|.+.+.+ +|+
T Consensus 210 ~~~~~~~~~~~ir~~v~~-~~vvvalSGGvDSsv~a~ll~~a~---------G~~v~av~v~~g~~~~~e~~~~~~~la~ 279 (525)
T 1gpm_A 210 PAKIIDDAVARIREQVGD-DKVILGLSGGVDSSVTAMLLHRAI---------GKNLTCVFVDNGLLRLNEAEQVLDMFGD 279 (525)
T ss_dssp HHHHHHHHHHHHHHHHTT-CEEEEECCSSHHHHHHHHHHHHHH---------GGGEEEEEEECSCSCTTHHHHHHHHHTT
T ss_pred HHHHHHhhhhhhhhhhcc-cceEEEecCCCCHHHHHHHHHHHh---------CCCEEEEEEeCCCCCchHHHHHHHHHHH
Confidence 345555556666666644 679999999999999999998874 2478888876432 357777765 899
Q ss_pred HhCCCceEEEeChhHHHHHHHHHHHhhccCCC-CcccchHHHHHHHHHHHhC-CCeEEEeccCcc
Q 010213 284 YLGTVHHEFHFTVQDGIDAIEEVIYHVETYDV-TTIRASTPMFLMSRKIKSL-GVKMVISGEGSD 346 (515)
Q Consensus 284 ~lg~~~~~~~~~~~~~~~~l~~~~~~~e~~~~-~~~~~~~~~~~l~~~a~~~-g~~vlltG~GgD 346 (515)
++|++++.+.++. .+.+.+.. ...+.. ..+........+.+.|++. |++.+++|+..|
T Consensus 280 ~lgi~~~~v~~~~-~f~~~l~~----~~~pe~~~~~~~~~~~~~l~~~A~~~~g~~~l~~Gt~~~ 339 (525)
T 1gpm_A 280 HFGLNIVHVPAED-RFLSALAG----ENDPEAKRKIIGRVFVEVFDEEALKLEDVKWLAQGTIYP 339 (525)
T ss_dssp TTCCCEEEEECHH-HHHHHHTT----CCCHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCCCHH
T ss_pred HhCCcEEEEeccH-HHHHhhcC----CCChHHhhhhhhHHHHHHHHHHHHhcCCCCEEEeCCCCc
Confidence 9999999988753 22222111 111100 0000001122345667777 899999999644
No 36
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=98.19 E-value=4e-06 Score=88.34 Aligned_cols=125 Identities=15% Similarity=0.072 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC--CCChHHHHHHHHHHh
Q 010213 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYL 285 (515)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~--~~~d~~~A~~va~~l 285 (515)
+.+.+...+.++..+.. .++.+.+|||+||+++++++.+.. .++.++++... ...|.+.++++|+.+
T Consensus 193 ~~~~~~~i~~ir~~~~~-~kvvvalSGGvDSsvla~ll~~~g----------~~v~av~vd~g~~~~~e~~~v~~~~~~l 261 (503)
T 2ywb_A 193 EHVLEELLREVRERAGK-DRVLLAVSGGVDSSTLALLLAKAG----------VDHLAVFVDHGLLRLGEREEVEGALRAL 261 (503)
T ss_dssp HHHHHHHHHHHHHHHTT-SEEEEEECSSHHHHHHHHHHHHHT----------CEEEEEEEECSCSCTTHHHHHHHHHHHT
T ss_pred hhhhHHHHHhhhhhccC-ccEEEEecCCcchHHHHHHHHHcC----------CeEEEEEEeCCCCChHHHHHHHHHHHHh
Confidence 34444444555555543 579999999999999999998863 57888887543 346889999999999
Q ss_pred CCCceEEEeChhHHHHHHHHHHHhhccCCC-CcccchHHHHHHHHHHHhC-CCeEEEeccCcccc
Q 010213 286 GTVHHEFHFTVQDGIDAIEEVIYHVETYDV-TTIRASTPMFLMSRKIKSL-GVKMVISGEGSDEI 348 (515)
Q Consensus 286 g~~~~~~~~~~~~~~~~l~~~~~~~e~~~~-~~~~~~~~~~~l~~~a~~~-g~~vlltG~GgDel 348 (515)
|++++.+.++. .+.+.+. ....+.. ..+........+.+.|++. |++.+++|+..|.+
T Consensus 262 gi~~~vv~~~~-~f~~~l~----g~~~pe~~r~~~~~~~~~~l~~~A~~~~g~~~la~G~~~~D~ 321 (503)
T 2ywb_A 262 GVNLLVVDAKE-RFLKALK----GVEDPEEKRKIIGREFVAAFSQVARERGPFRFLAQGTLYPDV 321 (503)
T ss_dssp TCCEEEEECHH-HHHHHHT----TCCCHHHHHHHHHHHHHHHHHHHHHHHCCCSEEECCCCHHHH
T ss_pred CCCEEEEECcH-HHHHhhc----CCCChHHHhhhhhHHHHHHHHHHHHhcCCCCEEEECCcCccc
Confidence 99999988643 1222111 0000100 0000001112344556666 89999999976543
No 37
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=98.15 E-value=5.6e-06 Score=89.56 Aligned_cols=145 Identities=17% Similarity=0.149 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHhhcc--ccceEEeecCCcchHHHHHHH-------HHHhcccccccc--------C----CC-----
Q 010213 207 PLVLRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASIT-------ARHLAGTKAARQ--------W----GT----- 260 (515)
Q Consensus 207 ~~~l~~~l~~aV~~rl~~--~~~v~v~LSGGlDSs~iaa~a-------~~~~~~~~~~~~--------~----~~----- 260 (515)
.+++...+...++.+++. ...+.+.||||+|||++|+++ .+.+..++.... . ..
T Consensus 283 ~~~~~~~~~~~l~d~~~~~g~~~vvlglSGGvDSsv~A~Lv~~~~~~a~~alG~~~v~~~~~~~~~~~~~~~~~~~~~~~ 362 (634)
T 3ilv_A 283 EFEFWEATSLGLFDYMRKSRSKGFVLSLSGGADSSACAIMVAEMIRKGLKELGLTAFLQKSNMETLFDLPALQHLPFEEQ 362 (634)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCGGGCCSSCSSCTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHhCchhhhhhhhcccccccccccccccccc
Confidence 456666666666666643 356889999999999999983 333321100000 0 00
Q ss_pred -------ceeeEEeecCCC--ChHHHHHHHHHHhCCCceEEEeChhHHHHHHHHHHHh-h-ccCCCC----cccc---hH
Q 010213 261 -------QLHSFCVGLEGS--PDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYH-V-ETYDVT----TIRA---ST 322 (515)
Q Consensus 261 -------~i~~~t~~~~~~--~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~~~~~~-~-e~~~~~----~~~~---~~ 322 (515)
-++++.++...+ .+...|+++|+.+|++|+++++.+ ..+.+.+.+.. . .++... ...+ ..
T Consensus 363 ~~~~~~~~~~~v~m~~~~ss~~~~~dA~~la~~LGi~~~~IdI~~--~~~~~~~~~~~~~g~~p~~~~~~~~~~N~qaR~ 440 (634)
T 3ilv_A 363 AKKITAVFLTTAYQSTRNSGDETYTSAKTLAESIGATFYNWSVDE--EIEQYKATIENVIERPLTWEKDDITLQNIQARG 440 (634)
T ss_dssp HHHHHHHHEEEEEEECTTCCSHHHHHHHHHHHHHTCEEEEEECHH--HHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHT
T ss_pred hhHhhhheeeeeecCCCCCCHHHHHHHHHHHHHhCCcEEEEccHH--HHHHHHHHHHHhhCCCcccccCcchhhhhhHHH
Confidence 056777765544 356789999999999999988753 22222221111 1 111100 0001 01
Q ss_pred HHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 010213 323 PMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (515)
Q Consensus 323 ~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~ 354 (515)
.+-.++..|.+.|..|+-||+ -||+.-||..
T Consensus 441 R~~~l~~~A~~~g~lvlgTgn-ksE~~~Gy~T 471 (634)
T 3ilv_A 441 RAPIIWMLTNVKQALLITTSN-RSEGDVGYAT 471 (634)
T ss_dssp THHHHHHHHHHHTCEEBCCCC-HHHHHTTCSC
T ss_pred HHHHHHHHHHhcCCEEeccCc-hhhHhhCCcc
Confidence 112344556667886666654 5677778754
No 38
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=98.14 E-value=9.5e-06 Score=75.56 Aligned_cols=119 Identities=11% Similarity=0.067 Sum_probs=72.6
Q ss_pred HHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHHHHHHhCCCce
Q 010213 213 AFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTVHH 290 (515)
Q Consensus 213 ~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~va~~lg~~~~ 290 (515)
.+..+++.. ..++.|.+|||.||++++.++.+.. .++..+++...- ..+..+++++|+.+|++++
T Consensus 35 ~l~~~~~~~---~~~v~Va~SGGkDS~vLL~ll~~~~----------~~v~~v~vd~g~~~~e~~~~v~~~~~~~gi~~~ 101 (215)
T 1sur_A 35 RVAWALDNL---PGEYVLSSSFGIQAAVSLHLVNQIR----------PDIPVILTDTGYLFPETYRFIDELTDKLKLNLK 101 (215)
T ss_dssp HHHHHHHHC---CSEEEEECCCCTTHHHHHHHHHHHS----------TTCEEEEEECSCBCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHc---CCCEEEEecCCHHHHHHHHHHHHhC----------CCCeEEEeeCCCCCHHHHHHHHHHHHHhCCcEE
Confidence 444444432 2479999999999999999998874 456667665432 2356889999999999999
Q ss_pred EEEeChhHHHHHHHHHHHhhccCCC-CcccchHH----HHHHHHHHHhCCCeEEEeccCcccc
Q 010213 291 EFHFTVQDGIDAIEEVIYHVETYDV-TTIRASTP----MFLMSRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 291 ~~~~~~~~~~~~l~~~~~~~e~~~~-~~~~~~~~----~~~l~~~a~~~g~~vlltG~GgDel 348 (515)
.+..+.. ....... . ...+.. +..+.... ...+.+.+++.|+.++++|+-.|+-
T Consensus 102 v~~~~~~-~~~~~~~--~-g~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~~~i~~G~r~dd~ 160 (215)
T 1sur_A 102 VYRATES-AAWQEAR--Y-GKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQS 160 (215)
T ss_dssp EEECSSC-HHHHHHH--H-CCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTEEEEECCCCTTSS
T ss_pred EEeCCCC-HHHHHHh--c-CCCCCCCccHHHHHHHHHHHHHHHHHHHhcCCceEEEEeehhhh
Confidence 8876532 1111111 0 011100 00000000 0123456677888899999999883
No 39
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=98.09 E-value=7.5e-06 Score=83.96 Aligned_cols=108 Identities=19% Similarity=0.219 Sum_probs=70.4
Q ss_pred ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC-C--ChHHHHHHHHHHh-----CCCceEEEeCh
Q 010213 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-S--PDLKYAKEVADYL-----GTVHHEFHFTV 296 (515)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~-~--~d~~~A~~va~~l-----g~~~~~~~~~~ 296 (515)
..++.+++|||+||+++++++.+.. .++.++++.... . .+...++++|+.+ |++++.++++.
T Consensus 187 ~~kvlvalSGGvDS~vll~ll~~~G----------~~v~av~v~~~~~~~~~~~~~v~~~a~~l~~~~ggi~~~vv~~~~ 256 (413)
T 2c5s_A 187 GGKVMVLLSGGIDSPVAAYLTMKRG----------VSVEAVHFHSPPFTSERAKQKVIDLAQELTKYCKRVTLHLVPFTE 256 (413)
T ss_dssp TEEEEEECCSSSHHHHHHHHHHHBT----------EEEEEEEEECTTTSCHHHHHHHHHHHHHHGGGSSCEEEEEEECHH
T ss_pred CCeEEEEeCCCChHHHHHHHHHHcC----------CcEEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcH
Confidence 3568899999999999999998742 578888876531 2 3567788889988 89999888653
Q ss_pred hHHHHHHHHHHHhhccCCCCcccchHHHH-HHHHHHHhCCCeEEEeccCcccc
Q 010213 297 QDGIDAIEEVIYHVETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 297 ~~~~~~l~~~~~~~e~~~~~~~~~~~~~~-~l~~~a~~~g~~vlltG~GgDel 348 (515)
.. ..+.. ... ....+...-..++ .+.+.|.+.|+..++||+..|.+
T Consensus 257 ~~--~~i~~---~~~-~~~~c~~~Rr~~~~~~~~~A~~~g~~~I~tG~~~dD~ 303 (413)
T 2c5s_A 257 VQ--KTINK---EIP-SSYSMTVMRRMMMRITERIAEERNALAITTGESLGQV 303 (413)
T ss_dssp HH--HHHHH---HSC-GGGHHHHHHHHHHHHHHHHHHHTTCCEEECCCCSSST
T ss_pred HH--HHHHh---cCC-cccHHHHHHHHHHHHHHHHHHHcCCCEEEEcccchhh
Confidence 21 11111 111 0000010111223 34567888999999999998865
No 40
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=98.07 E-value=3.2e-05 Score=84.08 Aligned_cols=80 Identities=19% Similarity=0.164 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHHHHHH
Q 010213 207 PLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADY 284 (515)
Q Consensus 207 ~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~va~~ 284 (515)
.+.+.+.+.+.++..+. +.++.+.||||+||+++++++.+.... .++.++++.... ..|.+.|+++|+.
T Consensus 223 ~~~~~~~~i~~Ir~~v~-~~~vvv~lSGGvDSsVla~Ll~~alG~--------~~V~aV~vd~g~~~~~e~e~a~~~a~~ 293 (697)
T 2vxo_A 223 VQNRELECIREIKERVG-TSKVLVLLSGGVDSTVCTALLNRALNQ--------EQVIAVHIDNGFMRKRESQSVEEALKK 293 (697)
T ss_dssp HHHHHHHHHHHHHHHHT-TCEEEEECCSSHHHHHHHHHHHHHSCG--------GGEEEEEEECSCCCSSTTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhc-ccceEEEccCchHHHHHHHHHHHhcCC--------ceEEEEEeccccCCcchHHHHHHHHHH
Confidence 34555566666776664 467999999999999999999987521 478888876543 4688999999999
Q ss_pred hCCCceEEEeC
Q 010213 285 LGTVHHEFHFT 295 (515)
Q Consensus 285 lg~~~~~~~~~ 295 (515)
+|++++.+.++
T Consensus 294 lGI~~~vvdi~ 304 (697)
T 2vxo_A 294 LGIQVKVINAA 304 (697)
T ss_dssp TTCCEEEEECH
T ss_pred hCCcEEEecch
Confidence 99999998875
No 41
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=98.01 E-value=2e-05 Score=81.31 Aligned_cols=112 Identities=14% Similarity=0.143 Sum_probs=71.2
Q ss_pred HHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC---C-ChHHHHHHHHHHhCCCceEE
Q 010213 217 AVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG---S-PDLKYAKEVADYLGTVHHEF 292 (515)
Q Consensus 217 aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~---~-~d~~~A~~va~~lg~~~~~~ 292 (515)
.+.+.+....+|.|++|||.||++++.++.+..... .+.++.++++...- + .|..+++++|+.+|++++++
T Consensus 5 ~l~~~l~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~-----~g~~v~avhvdhglr~~s~~~~~~v~~~~~~lgi~~~v~ 79 (433)
T 1ni5_A 5 TLNRQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN-----PGVALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVE 79 (433)
T ss_dssp HHHHHHTTCSEEEEECCSBHHHHHHHHHHHHHHTTS-----TTCEEEEEEECCSCCSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred hHHHhcCCCCEEEEEEcchHHHHHHHHHHHHHHHhc-----CCCeEEEEEEECCCCcccHHHHHHHHHHHHHcCCcEEEE
Confidence 344555667789999999999999999998754220 13467777775432 1 25778999999999999988
Q ss_pred EeChhHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccc
Q 010213 293 HFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (515)
Q Consensus 293 ~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDe 347 (515)
.++... ....... ......|.+...+.+ ++++++||+.+|.
T Consensus 80 ~~~~~~------------~~~~~e~-~aR~~Ry~~l~~~a~-~~~~i~tgH~~dD 120 (433)
T 1ni5_A 80 RVQLAQ------------EGLGIEA-QARQARYQAFARTLL-PGEVLVTAQHLDD 120 (433)
T ss_dssp CCCCCC------------SSSTTTT-HHHHHHHHHHHHTCC-TTEEEECCCCHHH
T ss_pred EecCCC------------CCCCHHH-HHHHHHHHHHHHHHh-hCCeEEeeccchH
Confidence 765320 0001000 011122333333322 4899999999886
No 42
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=97.95 E-value=6.3e-05 Score=80.15 Aligned_cols=139 Identities=18% Similarity=0.178 Sum_probs=92.3
Q ss_pred cHHHHHHHHHHHHHHhhccc--cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCCh--HHHHHHH
Q 010213 206 DPLVLRQAFENAVIKRLMTD--VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPD--LKYAKEV 281 (515)
Q Consensus 206 ~~~~l~~~l~~aV~~rl~~~--~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d--~~~A~~v 281 (515)
..+++.+.+.-.++.+++.. ..+.+-||||+||+++++++.+.+.. .++.++++....+.+ ...|+.+
T Consensus 279 ~~~~~~~a~~~gl~dy~~k~g~~~~vlglSGGiDSal~~~la~~alg~--------~~v~~v~mp~~~ts~~t~~~a~~l 350 (565)
T 4f4h_A 279 VEAQVYRALVLGVRDYIGKNGFPGAIIGLSGGVDSALVLAVAVDALGA--------ERVRAVMMPSRYTAGISTTDAADM 350 (565)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHHHHHHCG--------GGEEEEECCCTTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCcEEEecCCCccHHHHHHHHHHHhCC--------ccEEEEeccccccccchHHHHHHH
Confidence 34567777777788877643 45778899999999999999888743 478999987666554 4679999
Q ss_pred HHHhCCCceEEEeChhHHHHHHHHHHHhh-cc-CCCC---cccchHHHHHHHHHHHhCCCeEEEeccCccccccCCccc
Q 010213 282 ADYLGTVHHEFHFTVQDGIDAIEEVIYHV-ET-YDVT---TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 355 (515)
Q Consensus 282 a~~lg~~~~~~~~~~~~~~~~l~~~~~~~-e~-~~~~---~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~ 355 (515)
|+.+|+.++++.+++ ..+.+...+... .. .... .+.+...+..++..+.+.|.-|+=||.- +|+--||..+
T Consensus 351 a~~lg~~~~~i~i~~--~~~~~~~~~~~~~~~~~~d~~~eN~qaR~R~~~l~~~an~~g~lvlgTgn~-sE~a~Gy~T~ 426 (565)
T 4f4h_A 351 ARRVGVRYDEIAIAP--MFDAFRASLAAEFAGLAEDATEENIQARIRGTLLMALSNKFGSIVLTTGNK-SEMAVGYCTL 426 (565)
T ss_dssp HHHHTCEEEECCCHH--HHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCH-HHHHHTCSCT
T ss_pred HHHhCCceeeeecch--HHHHHHHHhhhcccCccchhhHhhhcchhhHHHHHHHHhhcCCcccCCCch-hhHhhccccc
Confidence 999999999877643 334333332211 11 0000 1112233445666777788877777754 4677788654
No 43
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=97.95 E-value=3.5e-05 Score=81.91 Aligned_cols=126 Identities=10% Similarity=0.126 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC--CCChHHHH-HHHHHH
Q 010213 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYA-KEVADY 284 (515)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~--~~~d~~~A-~~va~~ 284 (515)
+.+.+...+.++.. ..+.++.+.||||+||+++++++.+.. |.++.++++... ...|...+ +.+|++
T Consensus 239 ~~~~~~~i~~ir~~-g~~~~vvvalSGGvDSsv~a~ll~~~~---------G~~v~~v~vd~g~~~~~e~~~~~~~~~~~ 308 (556)
T 3uow_A 239 IRYHELELKNIEKY-KHDHYVIAAMSGGIDSTVAAAYTHKIF---------KERFFGIFIDNGLLRKNEAENVYTFLKST 308 (556)
T ss_dssp HHHHHHHHHHHGGG-TTTCEEEEECCSSHHHHHHHHHHHHHH---------GGGEEEEEEECSCSCTTHHHHHHHHHHHH
T ss_pred ccccccceeeeeec-CCCceEEEEcccCCCHHHHHHHHHHHh---------CCeEEEEEEecCCCChHHHHHHHHHHHHh
Confidence 44444444555555 336789999999999999999998875 257888887543 34566666 668999
Q ss_pred h-CCCceEEEeChhHHHHHHHHHHHhhccCCC-CcccchHHHHHHHHHHHhCCC----eEEEeccCcccc
Q 010213 285 L-GTVHHEFHFTVQDGIDAIEEVIYHVETYDV-TTIRASTPMFLMSRKIKSLGV----KMVISGEGSDEI 348 (515)
Q Consensus 285 l-g~~~~~~~~~~~~~~~~l~~~~~~~e~~~~-~~~~~~~~~~~l~~~a~~~g~----~vlltG~GgDel 348 (515)
+ |++|+.+.++.. +...+.. ...+.. ..+........+.+.|++.|. +.+.+|+..|.+
T Consensus 309 l~gi~~~~vd~~~~-f~~~l~g----~~~pe~kr~iig~~f~~vf~~~A~~~~~~~~~~~la~Gt~y~D~ 373 (556)
T 3uow_A 309 FPDMNITKIDASEN-FLSNLQG----VTDPEQKRKIIGKLFIEEFEKAVNNIDIDINKTFLLQGTLYPDI 373 (556)
T ss_dssp CTTSEEEEEECHHH-HHHHTTT----CCCHHHHHHHHHHHHHHHHHHHHHTTCCCGGGEEEECCCCHHHH
T ss_pred cCCCCeEEeccHHH-HHHhhcC----CCChHHHHHHHHHHHHHHHHHHHHHcCCcccccccccCccChHH
Confidence 9 999999887532 2221110 000000 000000112234556677775 889999776654
No 44
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=97.78 E-value=1.6e-05 Score=76.01 Aligned_cols=108 Identities=12% Similarity=0.106 Sum_probs=66.3
Q ss_pred cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHHHHHHhCCCceEEEeChhHHHHHH
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTVHHEFHFTVQDGIDAI 303 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l 303 (515)
.++.+.+|||.||++++.++.+.. .++..+++...- ..+..+++++++.+|++++.+..+.. ....
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~~----------~~v~vv~idtg~~~~et~~~~~~~~~~~gi~~~v~~~~~~--~~~~ 113 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQIR----------PDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATES--AAWQ 113 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHHS----------TTCEEEECCCSCBCHHHHHHHHHHHHHTTCEEEECCCSSC--HHHH
T ss_pred CCEEEEeCCCHHHHHHHHHHHHhC----------CCCeEEEecCCCCCHHHHHHHHHHHHHhCCceEEEcCCCC--HHHH
Confidence 479999999999999999998875 456667664332 23568899999999999877654421 1111
Q ss_pred HHHHHhhccCCC-CcccchHH----HHHHHHHHHhCCCeEEEeccCccc
Q 010213 304 EEVIYHVETYDV-TTIRASTP----MFLMSRKIKSLGVKMVISGEGSDE 347 (515)
Q Consensus 304 ~~~~~~~e~~~~-~~~~~~~~----~~~l~~~a~~~g~~vlltG~GgDe 347 (515)
... + ...+.. +..+.... ...+.+.+++.|+.+++||.-.|+
T Consensus 114 ~~~-~-g~~~~~~~~~~~~cc~~~K~~pl~~~l~~~~~~~~~tG~r~dd 160 (252)
T 2o8v_A 114 EAR-Y-GKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQ 160 (252)
T ss_dssp HHH-T-CCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTCSEEEECCCSTT
T ss_pred HHH-c-CCccccCCchHHHHHHHHHHHHHHHHHHhcCCcEEEEeccccc
Confidence 110 0 000100 00000000 012345567778889999999988
No 45
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=97.76 E-value=6.7e-05 Score=74.18 Aligned_cols=110 Identities=10% Similarity=0.082 Sum_probs=66.4
Q ss_pred cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC--CCChHHHHHHHHHHhCCCceEEEeChhHHHHHH
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAI 303 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~--~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l 303 (515)
.++.+.+|||.||++++.++.+..... +.++..+++... ......+++++++.+|++++.+..... ..
T Consensus 47 ~~ivVa~SGGkDS~vLL~Ll~~~~~~~------~~~i~vv~vDtg~~~~et~~~v~~~~~~~gi~l~v~~~~~~--~~-- 116 (325)
T 1zun_A 47 DNPVMLYSIGKDSAVMLHLARKAFFPG------KLPFPVMHVDTRWKFQEMYRFRDQMVEEMGLDLITHINPDG--VA-- 116 (325)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHTTS------CCSSCEEEECCSCCCHHHHHHHHHHHHTTTCCEEEECC---------
T ss_pred CCEEEEEcChHHHHHHHHHHHHhcccc------CCCEEEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCchH--Hh--
Confidence 478899999999999999998875321 135666766432 223568899999999999887654321 10
Q ss_pred HHHHHhhccCCC-CcccchH-HHHHHHHHHHhCCCeEEEeccCccccc
Q 010213 304 EEVIYHVETYDV-TTIRAST-PMFLMSRKIKSLGVKMVISGEGSDEIF 349 (515)
Q Consensus 304 ~~~~~~~e~~~~-~~~~~~~-~~~~l~~~a~~~g~~vlltG~GgDelf 349 (515)
. ....+.. ....... -...+.+.+++.|++++++|.-.||--
T Consensus 117 -~---G~~~~~~~~~~cc~~~K~~pL~~~l~e~g~~~i~tG~R~Des~ 160 (325)
T 1zun_A 117 -Q---GINPFTHGSAKHTDIMKTEGLKQALDKHGFDAAFGGARRDEEK 160 (325)
T ss_dssp -------------CCHHHHHHTHHHHHHHHHHHTCSEEECCCCTTSSG
T ss_pred -c---CCCccccChHHHHHHHHHHHHHHHHHHcCCCEEEEecccchhh
Confidence 0 0000100 0000000 011344556667899999999999854
No 46
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=97.73 E-value=7.4e-05 Score=71.66 Aligned_cols=112 Identities=10% Similarity=0.018 Sum_probs=67.6
Q ss_pred cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeec--CCCChHHHHHHHHHHhCC----CceEEEeChhHH
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL--EGSPDLKYAKEVADYLGT----VHHEFHFTVQDG 299 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~--~~~~d~~~A~~va~~lg~----~~~~~~~~~~~~ 299 (515)
.++.+.+|||.||++++.++.+.... +.++..+++.. ......++++++++++|+ +++.+.......
T Consensus 42 ~~v~va~SGGkDS~vLL~ll~~~~~~-------~~~i~vv~iDtg~~~~et~~~v~~~~~~~gl~~~~~l~v~~~~~~~~ 114 (261)
T 2oq2_A 42 PHLFQTTAFGLTGLVTIDMLSKLSEK-------YYMPELLFIDTLHHFPQTLTLKNEIEKKYYQPKNQTIHVYKPDGCES 114 (261)
T ss_dssp SSEEEECCCCHHHHHHHHHHHHHTTT-------SCCCEEEEECCSCBCHHHHHHHHHHHHHHTGGGTCCCEEECSTTCSS
T ss_pred CCEEEEecCCHHHHHHHHHHHHhCcc-------CCCeeEEEecCCCCCHHHHHHHHHHHHHhCCCCCCCeEEEecCCccC
Confidence 37899999999999999999987621 02566666643 222357889999999999 887765432100
Q ss_pred HHHHHHH----HHhhccCCCCcccchH-HHHHHHHHHHhCCCeEEEeccCcccc
Q 010213 300 IDAIEEV----IYHVETYDVTTIRAST-PMFLMSRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 300 ~~~l~~~----~~~~e~~~~~~~~~~~-~~~~l~~~a~~~g~~vlltG~GgDel 348 (515)
...+... .+... +. ..... -...+.+.+++.|++++++|.-.||-
T Consensus 115 ~~~~~~~~G~~~~~~~-~~---~cc~~~K~~pl~~~l~~~g~~~~~tG~R~dds 164 (261)
T 2oq2_A 115 EADFASKYGDFLWEKD-DD---KYDYLAKVEPAHRAYKELHISAVFTGRRKSQG 164 (261)
T ss_dssp HHHHHHHHCTTHHHHC-HH---HHHHHHTHHHHHHHHHHTTCSEEECCCCGGGC
T ss_pred HHHHHHHhCCCccccC-hH---HHHHHHhHHHHHHHHHHcCCCEEEEeccccch
Confidence 1111110 11000 00 00000 01123455677899999999999984
No 47
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=97.44 E-value=0.0002 Score=70.22 Aligned_cols=80 Identities=18% Similarity=0.208 Sum_probs=58.1
Q ss_pred cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHHHh-------CCCceEEE-eChh
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYL-------GTVHHEFH-FTVQ 297 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~l-------g~~~~~~~-~~~~ 297 (515)
.++.++||| +||++.++++.+.+ ..+.+.++.. +..+...|+++|+.+ +++++.++ +.
T Consensus 180 ~kvlvllSG-vDS~vaa~ll~~~G----------~~v~~v~~~~-~~~~~~~a~~~a~~l~~~~~~~~i~~~vv~~~~-- 245 (307)
T 1vbk_A 180 GRMIGILHD-ELSALAIFLMMKRG----------VEVIPVYIGK-DDKNLEKVRSLWNLLKRYSYGSKGFLVVAESFD-- 245 (307)
T ss_dssp CEEEEECSS-HHHHHHHHHHHHBT----------CEEEEEEESC-SSHHHHHHHHHHHHHHTTCTTSCCCCEEESSHH--
T ss_pred CcEEEEEeC-CcHHHHHHHHHhCC----------CeEEEEEEEE-CHHHHHHHHHHHHHHhhhccCCCCcEEEeCCCH--
Confidence 467899999 99999999988753 6788888762 223567789999988 66666554 21
Q ss_pred HHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccc
Q 010213 298 DGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (515)
Q Consensus 298 ~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDe 347 (515)
+ . + +.|.+.|++.+.||+.++.
T Consensus 246 ~---~----------------------~---~~A~~~ga~~I~tG~~~~~ 267 (307)
T 1vbk_A 246 R---V----------------------L---KLIRDFGVKGVIKGLRPND 267 (307)
T ss_dssp H---H----------------------H---HHHHHHTCCEEECCCCGGG
T ss_pred H---H----------------------H---HHHHHcCCCEEEECcccch
Confidence 0 0 0 4566779999999998754
No 48
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=97.39 E-value=0.00025 Score=66.37 Aligned_cols=60 Identities=17% Similarity=0.083 Sum_probs=44.5
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--------CChHHHHHHHHHHhCCCceEEEeCh
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--------SPDLKYAKEVADYLGTVHHEFHFTV 296 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--------~~d~~~A~~va~~lg~~~~~~~~~~ 296 (515)
++.+++|||.||++.++++.+.. .++.++...++. ..+.+.|+++|+.+|++++.+.++.
T Consensus 6 Kvvvl~SGGkDSs~al~~l~~~G----------~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIpl~~v~~~g 73 (237)
T 3rjz_A 6 DVAVLYSGGKDSNYALYWAIKNR----------FSVKFLVTMVSENEESYMYHTINANLTDLQARALGIPLVKGFTQG 73 (237)
T ss_dssp EEEEECCSSHHHHHHHHHHHHTT----------CEEEEEEEEECC--------CCSSSHHHHHHHHHTCCEEEEEC--
T ss_pred EEEEEecCcHHHHHHHHHHHHcC----------CeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 58899999999999999887653 466655432221 2456789999999999999988754
No 49
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=96.87 E-value=0.0035 Score=60.34 Aligned_cols=59 Identities=8% Similarity=0.169 Sum_probs=45.9
Q ss_pred cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHHHHHHhCCCceEEEeC
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTVHHEFHFT 295 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~va~~lg~~~~~~~~~ 295 (515)
.++.+.+| |.||++++.++.+.. .++..+++...- .....+++++++.+|++++.+...
T Consensus 55 ~~i~Va~S-GkDS~vLL~Ll~~~~----------~~i~vv~iDtg~~~~et~~~v~~~~~~~gi~l~v~~~~ 115 (275)
T 2goy_A 55 DELWISFS-GAEDVVLVDMAWKLN----------RNVKVFSLDTGRLHPETYRFIDQVREHYGIAIDVLSPD 115 (275)
T ss_dssp TTEEEECC-SSTTHHHHHHHHHHC----------TTCCEEEECCSCCCHHHHHHHHHHHHHHTCCCEEECCC
T ss_pred CCEEEEee-cHHHHHHHHHHHHhC----------CCceEEEEeCCCCCHHHHHHHHHHHHHHCCeEEEEeCC
Confidence 57999999 999999999998863 456667664332 235688999999999998876544
No 50
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.0069 Score=59.19 Aligned_cols=104 Identities=13% Similarity=0.067 Sum_probs=61.0
Q ss_pred cceEEeecCCcchHHHHHHHHHHhccc----------cc--cccCCCceeeEEeecCCC--ChHHHHHHHHHHhCCCceE
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAGT----------KA--ARQWGTQLHSFCVGLEGS--PDLKYAKEVADYLGTVHHE 291 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~----------~~--~~~~~~~i~~~t~~~~~~--~d~~~A~~va~~lg~~~~~ 291 (515)
.++.+.+|||.||++++.++.+.+... +. ....+.++..+++..... ...++++++++.+|++++.
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~fpet~~fv~~~~~~ygl~l~v 133 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEETFPTLENFVLETSERYCLSLYE 133 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTCCHHHHHHHHHHHHHTTEEEEE
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 469999999999999999988763110 00 000013566776643322 3568899999999998766
Q ss_pred EEeChhHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHh-CCCeEEEeccCcccccc
Q 010213 292 FHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKS-LGVKMVISGEGSDEIFG 350 (515)
Q Consensus 292 ~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~-~g~~vlltG~GgDelf~ 350 (515)
+..... .. . .+... +.+.++. .+.+++++|.-.||-.+
T Consensus 134 ~~~~~~--~~---------~-----~l~~~-----~~~~~k~~p~~~aii~G~Rrdds~~ 172 (306)
T 2wsi_A 134 SQRQSG--AS---------V-----NMADA-----FRDFIKIYPETEAIVIGIRHTDPFG 172 (306)
T ss_dssp CCC----------------C-----CHHHH-----HHHHHHHCTTCCEEECCCCCCSSSC
T ss_pred EeCCcc--cc---------c-----cHHHH-----HHHHHhhCCCCcEEEEEEecccccc
Confidence 543210 00 0 00000 1111222 46789999999998653
No 51
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=92.75 E-value=0.15 Score=49.25 Aligned_cols=66 Identities=12% Similarity=0.104 Sum_probs=40.0
Q ss_pred cceEEeecCCcchHHHHHHHHHHhcc-----cccc------ccC-CCceeeEEeecCC-CCh-HHHHHHHHHHhCCCceE
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAG-----TKAA------RQW-GTQLHSFCVGLEG-SPD-LKYAKEVADYLGTVHHE 291 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~-----~~~~------~~~-~~~i~~~t~~~~~-~~d-~~~A~~va~~lg~~~~~ 291 (515)
..+++.+|||.||++++.++.+.+.. .+.. ... ..++..+.+.... .+| .++..++++++|++.+.
T Consensus 59 ~~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG~~FpET~ef~d~~~~~ygL~L~v 138 (308)
T 3fwk_A 59 GEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTFKTLENFIEETSLRYSLSLYE 138 (308)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCTTCCHHHHHHHHHHHHHTTEEEEE
T ss_pred CCEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCCCCCHHHHHHHHHHHHHhCCcEEE
Confidence 35899999999999999998876310 0000 000 0245566654322 234 47889999999986544
No 52
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=21.97 E-value=72 Score=37.36 Aligned_cols=31 Identities=19% Similarity=0.358 Sum_probs=24.1
Q ss_pred eEEEEEEcCCCCch-HHHHHHHHHHHhcccCC
Q 010213 2 CGILAVLGCSDDSQ-AKRVRVLELSRRLKHRG 32 (515)
Q Consensus 2 cGI~G~~~~~~~~~-~~~~~~~~~~~~l~~RG 32 (515)
|||.++.+.++.+. ...+....++..|.|||
T Consensus 1 CGvg~va~~~G~~sh~iv~~al~~L~~m~HRG 32 (1520)
T 1ofd_A 1 CGVGFIANLRGKPDHTLVEQALKALGCMEHRG 32 (1520)
T ss_dssp CEEEEEECSSSCCBSHHHHHHHHHHHHTGGGS
T ss_pred CeEEEEEEcCCCccHHHHHHHHHHHHhccccC
Confidence 99999999887653 23455667789999999
No 53
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=20.40 E-value=68 Score=37.43 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=24.5
Q ss_pred eEEEEEEcCCCCchH-HHHHHHHHHHhcccCCC
Q 010213 2 CGILAVLGCSDDSQA-KRVRVLELSRRLKHRGP 33 (515)
Q Consensus 2 cGI~G~~~~~~~~~~-~~~~~~~~~~~l~~RGp 33 (515)
|||.++.+.++.+.. ..+....++..|.|||-
T Consensus 1 CGvg~va~~~G~~sh~~v~~al~aL~~m~HRG~ 33 (1479)
T 1ea0_A 1 CGVGFIAAIDGKPRRSVVEKGIEALKAVWHRGA 33 (1479)
T ss_dssp CEECEEEETTCCCBHHHHHHHHHHHTSCGGGSC
T ss_pred CeEEEEEEcCCCccHHHHHHHHHHHHhccccCc
Confidence 999999998876542 34456677888999986
Done!