Query 010215
Match_columns 515
No_of_seqs 737 out of 3296
Neff 11.1
Searched_HMMs 46136
Date Thu Mar 28 22:23:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010215.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010215hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 5.7E-68 1.2E-72 559.4 47.2 463 28-514 216-685 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 3.9E-67 8.4E-72 553.1 46.6 465 28-513 115-616 (857)
3 PLN03218 maturation of RBCL 1; 100.0 2.6E-65 5.6E-70 529.5 55.3 470 34-513 370-874 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 2.2E-63 4.7E-68 515.2 55.0 472 33-515 405-909 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 1.1E-63 2.3E-68 514.9 49.8 433 61-514 84-522 (697)
6 PLN03081 pentatricopeptide (PP 100.0 1.6E-59 3.5E-64 483.9 46.1 457 34-514 87-556 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.4E-25 3.1E-30 242.0 54.8 387 112-514 513-899 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 8.6E-25 1.9E-29 235.9 56.0 366 135-514 500-865 (899)
9 PRK11788 tetratricopeptide rep 99.9 1.9E-21 4.2E-26 188.6 35.5 305 142-486 43-353 (389)
10 PRK11788 tetratricopeptide rep 99.9 2E-21 4.3E-26 188.5 35.3 322 95-432 32-365 (389)
11 KOG4626 O-linked N-acetylgluco 99.9 4E-20 8.6E-25 171.8 34.7 329 133-478 115-483 (966)
12 PRK15174 Vi polysaccharide exp 99.9 5E-19 1.1E-23 180.1 43.6 326 142-479 50-380 (656)
13 TIGR00990 3a0801s09 mitochondr 99.9 4.8E-18 1E-22 173.6 50.0 390 112-514 141-570 (615)
14 KOG4626 O-linked N-acetylgluco 99.9 8.6E-20 1.9E-24 169.6 33.1 352 100-469 116-508 (966)
15 PRK11447 cellulose synthase su 99.9 6.7E-18 1.4E-22 183.7 51.9 384 112-513 283-738 (1157)
16 PRK15174 Vi polysaccharide exp 99.9 6.8E-18 1.5E-22 171.9 44.5 354 112-478 56-418 (656)
17 PRK10049 pgaA outer membrane p 99.9 1.3E-17 2.7E-22 173.6 45.5 396 105-514 22-455 (765)
18 PRK11447 cellulose synthase su 99.9 1.1E-16 2.4E-21 174.2 49.3 385 112-511 76-554 (1157)
19 TIGR00990 3a0801s09 mitochondr 99.8 9.2E-16 2E-20 156.8 47.5 367 136-514 129-536 (615)
20 PRK10049 pgaA outer membrane p 99.8 3.5E-16 7.7E-21 162.8 45.1 414 62-496 16-470 (765)
21 PRK14574 hmsH outer membrane p 99.8 2.2E-14 4.8E-19 146.8 50.0 432 65-513 36-511 (822)
22 PRK14574 hmsH outer membrane p 99.8 3.6E-14 7.8E-19 145.3 48.1 407 97-513 33-477 (822)
23 PRK09782 bacteriophage N4 rece 99.8 1.2E-13 2.6E-18 144.4 52.2 454 34-514 78-705 (987)
24 KOG4422 Uncharacterized conser 99.8 3.2E-13 6.8E-18 121.2 40.9 421 64-513 116-588 (625)
25 PRK09782 bacteriophage N4 rece 99.7 3E-12 6.4E-17 134.1 51.7 348 147-511 355-736 (987)
26 KOG2002 TPR-containing nuclear 99.7 1.3E-13 2.7E-18 135.7 37.4 395 112-513 284-743 (1018)
27 KOG2076 RNA polymerase III tra 99.7 8.4E-13 1.8E-17 129.1 40.1 365 139-512 144-552 (895)
28 KOG2003 TPR repeat-containing 99.7 7.6E-14 1.6E-18 125.9 27.6 387 114-513 217-687 (840)
29 PRK10747 putative protoheme IX 99.7 8.5E-13 1.8E-17 127.0 34.5 290 147-478 97-388 (398)
30 KOG1155 Anaphase-promoting com 99.7 4.3E-12 9.3E-17 115.2 36.3 299 129-442 159-493 (559)
31 TIGR00540 hemY_coli hemY prote 99.7 7.6E-13 1.6E-17 128.1 34.2 292 147-478 97-397 (409)
32 TIGR00540 hemY_coli hemY prote 99.7 8.3E-13 1.8E-17 127.8 33.3 289 215-513 96-397 (409)
33 KOG4422 Uncharacterized conser 99.6 8.8E-12 1.9E-16 112.1 35.7 343 131-482 204-592 (625)
34 PF13429 TPR_15: Tetratricopep 99.6 1.3E-15 2.9E-20 140.0 11.7 258 175-441 15-274 (280)
35 PRK10747 putative protoheme IX 99.6 4.5E-12 9.7E-17 122.0 36.1 282 216-513 97-388 (398)
36 COG2956 Predicted N-acetylgluc 99.6 2E-12 4.2E-17 112.1 27.9 291 148-479 49-346 (389)
37 PF13429 TPR_15: Tetratricopep 99.6 4.1E-15 9E-20 136.7 12.0 259 243-512 14-274 (280)
38 KOG2002 TPR-containing nuclear 99.6 7E-11 1.5E-15 116.8 41.6 388 113-513 251-707 (1018)
39 KOG2003 TPR repeat-containing 99.6 5.8E-12 1.2E-16 114.0 31.4 378 113-502 252-710 (840)
40 KOG0495 HAT repeat protein [RN 99.6 5.9E-10 1.3E-14 105.7 43.6 403 92-512 471-877 (913)
41 KOG2076 RNA polymerase III tra 99.6 5.5E-11 1.2E-15 116.7 38.1 359 112-478 153-553 (895)
42 COG2956 Predicted N-acetylgluc 99.6 1.8E-11 3.8E-16 106.3 30.4 224 109-336 46-278 (389)
43 COG3071 HemY Uncharacterized e 99.6 8.5E-11 1.8E-15 105.3 32.7 284 181-478 97-388 (400)
44 COG3071 HemY Uncharacterized e 99.5 1.6E-10 3.5E-15 103.6 33.0 286 147-443 97-389 (400)
45 KOG1126 DNA-binding cell divis 99.5 7.2E-12 1.6E-16 119.0 25.9 282 149-443 334-619 (638)
46 KOG1126 DNA-binding cell divis 99.5 8.3E-12 1.8E-16 118.6 25.7 277 183-479 334-619 (638)
47 PRK12370 invasion protein regu 99.5 5.3E-11 1.1E-15 119.7 27.9 270 162-444 250-535 (553)
48 KOG0495 HAT repeat protein [RN 99.5 4.8E-08 1E-12 93.1 45.0 383 114-514 422-845 (913)
49 KOG1155 Anaphase-promoting com 99.5 7.5E-10 1.6E-14 100.9 31.5 312 140-464 233-553 (559)
50 TIGR02521 type_IV_pilW type IV 99.4 1.4E-10 3E-15 103.7 26.1 200 133-335 30-231 (234)
51 KOG1915 Cell cycle control pro 99.4 2.4E-08 5.3E-13 91.5 39.0 387 113-513 88-534 (677)
52 KOG0547 Translocase of outer m 99.4 3.1E-09 6.6E-14 97.7 32.9 373 113-512 130-563 (606)
53 PRK12370 invasion protein regu 99.4 7.6E-10 1.7E-14 111.4 31.4 248 219-479 277-534 (553)
54 TIGR02521 type_IV_pilW type IV 99.4 4.6E-10 9.9E-15 100.4 25.9 94 170-264 33-126 (234)
55 KOG1129 TPR repeat-containing 99.4 3.1E-10 6.6E-15 98.8 22.9 234 167-406 222-457 (478)
56 KOG4318 Bicoid mRNA stability 99.4 1.3E-10 2.9E-15 113.6 21.0 251 189-466 11-286 (1088)
57 PF12569 NARP1: NMDA receptor- 99.3 8.4E-09 1.8E-13 100.5 32.7 297 137-443 7-333 (517)
58 PF13041 PPR_2: PPR repeat fam 99.3 4.4E-12 9.5E-17 82.0 6.3 49 270-318 1-49 (50)
59 KOG1173 Anaphase-promoting com 99.3 4.6E-09 1E-13 98.3 28.0 287 200-496 241-532 (611)
60 KOG1173 Anaphase-promoting com 99.3 4.4E-09 9.6E-14 98.4 27.0 279 170-458 246-529 (611)
61 KOG1174 Anaphase-promoting com 99.3 1.4E-08 3E-13 91.5 28.8 286 115-408 213-501 (564)
62 KOG1915 Cell cycle control pro 99.3 1.6E-07 3.5E-12 86.3 36.0 363 135-512 74-497 (677)
63 PF12569 NARP1: NMDA receptor- 99.3 1.2E-08 2.6E-13 99.4 30.6 129 380-514 196-333 (517)
64 PF13041 PPR_2: PPR repeat fam 99.3 1.1E-11 2.4E-16 80.0 6.6 50 449-498 1-50 (50)
65 KOG4318 Bicoid mRNA stability 99.3 2.1E-09 4.6E-14 105.4 23.3 333 95-478 20-368 (1088)
66 KOG1129 TPR repeat-containing 99.3 2.4E-09 5.2E-14 93.4 20.9 238 236-486 222-462 (478)
67 KOG2047 mRNA splicing factor [ 99.2 5.4E-07 1.2E-11 86.0 37.5 221 286-512 361-612 (835)
68 KOG0547 Translocase of outer m 99.2 9.2E-08 2E-12 88.2 31.5 358 138-514 119-531 (606)
69 KOG2376 Signal recognition par 99.2 7E-07 1.5E-11 84.5 37.8 383 112-511 26-516 (652)
70 KOG1174 Anaphase-promoting com 99.2 8.8E-08 1.9E-12 86.5 30.3 307 166-486 194-504 (564)
71 KOG4162 Predicted calmodulin-b 99.2 5.2E-07 1.1E-11 88.0 37.4 405 96-515 319-783 (799)
72 KOG1156 N-terminal acetyltrans 99.2 1.7E-06 3.7E-11 82.8 40.1 90 418-512 375-465 (700)
73 cd05804 StaR_like StaR_like; a 99.2 1.7E-07 3.8E-12 89.7 33.5 270 134-407 6-293 (355)
74 KOG1840 Kinesin light chain [C 99.2 1.3E-08 2.8E-13 98.1 24.9 244 162-405 193-477 (508)
75 PRK11189 lipoprotein NlpI; Pro 99.2 4.4E-08 9.5E-13 90.4 27.2 204 205-418 66-274 (296)
76 KOG1840 Kinesin light chain [C 99.2 4.3E-08 9.3E-13 94.5 27.1 246 232-478 194-477 (508)
77 KOG3785 Uncharacterized conser 99.2 1.5E-06 3.2E-11 77.2 33.8 116 391-514 372-489 (557)
78 KOG4340 Uncharacterized conser 99.2 1.8E-07 3.9E-12 80.9 27.5 286 139-438 15-333 (459)
79 PRK11189 lipoprotein NlpI; Pro 99.1 8E-08 1.7E-12 88.7 27.4 205 134-346 64-274 (296)
80 cd05804 StaR_like StaR_like; a 99.1 8.6E-07 1.9E-11 84.9 35.3 310 165-479 3-335 (355)
81 COG3063 PilF Tfp pilus assembl 99.1 1.3E-07 2.8E-12 79.0 24.4 210 274-492 37-246 (250)
82 COG3063 PilF Tfp pilus assembl 99.1 1.5E-07 3.1E-12 78.7 24.4 198 136-336 37-236 (250)
83 KOG2047 mRNA splicing factor [ 99.1 4E-06 8.7E-11 80.3 36.6 301 135-443 249-614 (835)
84 KOG1156 N-terminal acetyltrans 99.1 5.6E-06 1.2E-10 79.5 36.0 403 95-514 38-510 (700)
85 PF04733 Coatomer_E: Coatomer 99.1 3.8E-08 8.3E-13 89.4 20.5 253 175-444 8-265 (290)
86 PRK04841 transcriptional regul 99.0 5.1E-06 1.1E-10 90.1 37.0 337 175-514 381-759 (903)
87 KOG0985 Vesicle coat protein c 99.0 1.1E-05 2.4E-10 81.1 35.0 265 98-402 950-1218(1666)
88 KOG3785 Uncharacterized conser 99.0 1.3E-05 2.8E-10 71.3 31.1 377 112-511 36-453 (557)
89 KOG0985 Vesicle coat protein c 98.9 4.6E-05 9.9E-10 76.9 37.7 319 98-477 982-1305(1666)
90 KOG0624 dsRNA-activated protei 98.9 1.6E-05 3.5E-10 70.5 30.9 301 132-443 36-369 (504)
91 KOG3616 Selective LIM binding 98.9 4.2E-06 9.2E-11 81.2 29.3 192 281-510 741-932 (1636)
92 KOG4340 Uncharacterized conser 98.9 1.8E-06 3.8E-11 74.9 24.2 324 174-511 16-371 (459)
93 PF04733 Coatomer_E: Coatomer 98.9 9.2E-08 2E-12 87.0 17.4 247 213-479 11-264 (290)
94 KOG0624 dsRNA-activated protei 98.9 2.4E-05 5.2E-10 69.5 29.8 96 168-266 38-135 (504)
95 KOG0548 Molecular co-chaperone 98.8 4.2E-05 9.1E-10 72.1 32.2 368 112-496 16-469 (539)
96 KOG3081 Vesicle coat complex C 98.8 1.3E-05 2.7E-10 68.8 25.4 252 175-444 15-271 (299)
97 KOG1125 TPR repeat-containing 98.8 1.3E-06 2.7E-11 82.8 21.1 253 246-508 294-564 (579)
98 PRK04841 transcriptional regul 98.8 4.6E-05 1E-09 82.7 35.3 336 143-481 383-761 (903)
99 KOG1914 mRNA cleavage and poly 98.7 0.00022 4.8E-09 67.4 34.7 128 61-197 17-166 (656)
100 KOG4162 Predicted calmodulin-b 98.7 5.6E-05 1.2E-09 74.3 30.8 127 344-479 652-782 (799)
101 PLN02789 farnesyltranstransfer 98.7 1.7E-05 3.6E-10 73.3 25.9 214 137-354 40-267 (320)
102 TIGR03302 OM_YfiO outer membra 98.7 2.3E-06 5E-11 76.5 19.9 188 131-336 30-232 (235)
103 KOG3617 WD40 and TPR repeat-co 98.7 7.6E-05 1.6E-09 73.8 30.7 90 376-477 1078-1171(1416)
104 KOG1128 Uncharacterized conser 98.7 4.6E-06 1E-10 81.1 22.2 238 201-462 396-634 (777)
105 KOG3616 Selective LIM binding 98.7 8.7E-05 1.9E-09 72.5 30.2 317 137-511 536-875 (1636)
106 KOG1125 TPR repeat-containing 98.7 5.1E-06 1.1E-10 78.8 21.2 254 211-473 293-564 (579)
107 COG5010 TadD Flp pilus assembl 98.7 2.7E-06 5.9E-11 72.8 17.3 127 133-260 99-225 (257)
108 PF12854 PPR_1: PPR repeat 98.7 3.8E-08 8.2E-13 56.9 4.2 32 446-477 2-33 (34)
109 KOG1128 Uncharacterized conser 98.7 1.2E-05 2.7E-10 78.2 23.3 239 165-424 395-633 (777)
110 PF12854 PPR_1: PPR repeat 98.7 4.4E-08 9.6E-13 56.6 4.2 32 373-404 2-33 (34)
111 KOG3617 WD40 and TPR repeat-co 98.7 0.00016 3.5E-09 71.6 30.5 233 99-366 725-991 (1416)
112 KOG1070 rRNA processing protei 98.6 3.6E-05 7.8E-10 80.2 27.2 242 255-508 1443-1693(1710)
113 PLN02789 farnesyltranstransfer 98.6 4.6E-05 1E-09 70.4 25.9 207 177-390 46-267 (320)
114 KOG1127 TPR repeat-containing 98.6 8.4E-05 1.8E-09 75.1 28.7 383 113-511 473-909 (1238)
115 TIGR03302 OM_YfiO outer membra 98.6 7.2E-06 1.6E-10 73.3 19.9 185 165-371 30-231 (235)
116 COG5010 TadD Flp pilus assembl 98.6 1.2E-05 2.7E-10 68.9 19.6 154 175-331 73-226 (257)
117 PRK14720 transcript cleavage f 98.6 6.6E-05 1.4E-09 77.5 27.5 56 309-366 118-173 (906)
118 PRK10370 formate-dependent nit 98.6 1.3E-05 2.7E-10 69.0 19.3 119 181-301 52-173 (198)
119 KOG1070 rRNA processing protei 98.6 5.8E-05 1.3E-09 78.7 26.3 223 202-430 1457-1687(1710)
120 KOG1127 TPR repeat-containing 98.6 0.00014 3E-09 73.6 28.1 149 113-265 507-658 (1238)
121 KOG0548 Molecular co-chaperone 98.5 0.00091 2E-08 63.4 32.4 352 74-443 13-454 (539)
122 PRK15179 Vi polysaccharide bio 98.5 4.7E-05 1E-09 77.6 24.9 203 143-355 58-268 (694)
123 KOG1914 mRNA cleavage and poly 98.5 0.001 2.2E-08 63.1 36.1 130 379-513 367-499 (656)
124 PRK14720 transcript cleavage f 98.5 4.7E-05 1E-09 78.5 23.8 220 132-389 29-268 (906)
125 PRK15179 Vi polysaccharide bio 98.5 9.7E-06 2.1E-10 82.5 18.7 148 129-278 81-228 (694)
126 PRK10370 formate-dependent nit 98.5 8.6E-06 1.9E-10 70.0 15.7 126 146-273 51-179 (198)
127 PRK15359 type III secretion sy 98.5 1.1E-05 2.4E-10 65.5 14.8 104 137-241 27-130 (144)
128 KOG3060 Uncharacterized conser 98.4 0.00019 4.1E-09 61.3 21.8 187 113-301 27-220 (289)
129 KOG2376 Signal recognition par 98.4 0.002 4.2E-08 61.9 33.9 354 135-511 13-442 (652)
130 KOG3081 Vesicle coat complex C 98.4 0.00058 1.3E-08 58.9 24.6 81 282-366 147-231 (299)
131 PRK15359 type III secretion sy 98.4 1.6E-05 3.5E-10 64.5 14.7 92 174-266 30-121 (144)
132 TIGR02552 LcrH_SycD type III s 98.4 1.6E-05 3.4E-10 64.1 14.7 109 157-266 6-114 (135)
133 COG4783 Putative Zn-dependent 98.4 0.0006 1.3E-08 64.0 26.1 117 176-294 314-430 (484)
134 COG4783 Putative Zn-dependent 98.3 0.00038 8.2E-09 65.3 22.7 139 246-407 315-454 (484)
135 KOG3060 Uncharacterized conser 98.3 0.00079 1.7E-08 57.7 22.4 185 149-336 27-220 (289)
136 TIGR02552 LcrH_SycD type III s 98.3 4.2E-05 9.1E-10 61.6 14.3 97 204-301 18-114 (135)
137 KOG2053 Mitochondrial inherita 98.2 0.0084 1.8E-07 60.6 39.7 205 95-303 40-257 (932)
138 PF09976 TPR_21: Tetratricopep 98.2 0.00016 3.4E-09 58.9 16.0 125 136-262 14-143 (145)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 9.2E-05 2E-09 69.9 15.3 121 139-263 174-294 (395)
140 TIGR00756 PPR pentatricopeptid 98.1 5.4E-06 1.2E-10 48.7 4.5 34 453-486 2-35 (35)
141 KOG2053 Mitochondrial inherita 98.1 0.015 3.2E-07 59.0 38.0 222 112-337 23-256 (932)
142 TIGR00756 PPR pentatricopeptid 98.1 5.5E-06 1.2E-10 48.6 4.3 33 274-306 2-34 (35)
143 PF09976 TPR_21: Tetratricopep 98.1 0.00028 6.1E-09 57.5 14.9 22 245-266 56-77 (145)
144 PF13812 PPR_3: Pentatricopept 98.0 8E-06 1.7E-10 47.5 4.1 33 452-484 2-34 (34)
145 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00023 5E-09 67.2 15.4 126 170-300 171-296 (395)
146 PF13812 PPR_3: Pentatricopept 98.0 1.1E-05 2.4E-10 46.9 4.2 31 274-304 3-33 (34)
147 PRK10866 outer membrane biogen 98.0 0.0055 1.2E-07 54.5 23.0 184 133-334 31-239 (243)
148 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00026 5.6E-09 55.4 13.3 104 136-239 4-112 (119)
149 PF05843 Suf: Suppressor of fo 98.0 0.00016 3.5E-09 65.9 13.6 131 135-266 2-136 (280)
150 PF10037 MRP-S27: Mitochondria 98.0 0.00018 4E-09 68.2 13.6 120 269-389 63-184 (429)
151 cd00189 TPR Tetratricopeptide 97.9 0.00026 5.7E-09 52.4 11.3 89 139-228 5-93 (100)
152 PF10037 MRP-S27: Mitochondria 97.9 0.00021 4.5E-09 67.8 12.2 102 339-443 63-166 (429)
153 PF14938 SNAP: Soluble NSF att 97.8 0.0029 6.2E-08 58.1 18.0 18 281-298 44-61 (282)
154 PF01535 PPR: PPR repeat; Int 97.8 3.7E-05 8E-10 43.5 3.4 27 275-301 3-29 (31)
155 cd00189 TPR Tetratricopeptide 97.8 0.00051 1.1E-08 50.8 10.8 91 174-265 6-96 (100)
156 KOG0553 TPR repeat-containing 97.7 0.00064 1.4E-08 59.9 11.8 102 387-496 90-192 (304)
157 PF08579 RPM2: Mitochondrial r 97.7 0.00093 2E-08 49.7 10.8 75 278-352 31-114 (120)
158 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0016 3.4E-08 50.9 13.4 96 241-336 6-105 (119)
159 PF01535 PPR: PPR repeat; Int 97.7 5.5E-05 1.2E-09 42.8 3.6 30 453-482 2-31 (31)
160 PF08579 RPM2: Mitochondrial r 97.7 0.00096 2.1E-08 49.6 10.7 78 242-319 30-116 (120)
161 PF14938 SNAP: Soluble NSF att 97.7 0.021 4.5E-07 52.5 22.2 124 243-366 120-261 (282)
162 PF07079 DUF1347: Protein of u 97.6 0.06 1.3E-06 50.6 33.3 138 112-250 20-180 (549)
163 PLN03088 SGT1, suppressor of 97.6 0.0021 4.5E-08 61.0 14.9 97 142-239 10-106 (356)
164 PF12688 TPR_5: Tetratrico pep 97.6 0.0039 8.6E-08 48.2 13.6 105 174-282 7-116 (120)
165 PF05843 Suf: Suppressor of fo 97.6 0.0013 2.7E-08 60.2 12.8 129 171-301 4-136 (280)
166 PF12895 Apc3: Anaphase-promot 97.6 0.00014 3.1E-09 52.8 5.3 79 428-510 3-82 (84)
167 PRK15363 pathogenicity island 97.6 0.0028 6.1E-08 50.9 12.6 89 175-264 42-130 (157)
168 PRK15363 pathogenicity island 97.6 0.0017 3.7E-08 52.1 11.4 94 135-229 36-129 (157)
169 PRK02603 photosystem I assembl 97.5 0.0061 1.3E-07 51.3 15.5 62 135-196 36-100 (172)
170 KOG2041 WD40 repeat protein [G 97.5 0.11 2.4E-06 51.5 27.5 175 131-330 689-875 (1189)
171 PF12895 Apc3: Anaphase-promot 97.5 0.00018 3.8E-09 52.3 5.0 19 243-261 31-49 (84)
172 PLN03088 SGT1, suppressor of 97.5 0.0027 5.8E-08 60.2 14.3 92 175-267 9-100 (356)
173 CHL00033 ycf3 photosystem I as 97.5 0.0037 7.9E-08 52.4 13.4 78 171-248 38-117 (168)
174 PF13432 TPR_16: Tetratricopep 97.5 0.00056 1.2E-08 46.8 6.7 58 140-197 3-60 (65)
175 PF14559 TPR_19: Tetratricopep 97.4 0.00044 9.5E-09 47.8 6.0 61 145-207 2-62 (68)
176 KOG1130 Predicted G-alpha GTPa 97.4 0.0028 6.1E-08 58.2 12.4 131 309-440 197-340 (639)
177 COG3898 Uncharacterized membra 97.4 0.098 2.1E-06 48.2 29.1 125 349-484 270-396 (531)
178 PRK02603 photosystem I assembl 97.4 0.0079 1.7E-07 50.6 14.6 116 168-287 35-166 (172)
179 PRK10153 DNA-binding transcrip 97.4 0.018 3.8E-07 57.3 19.0 134 303-443 333-481 (517)
180 COG4700 Uncharacterized protei 97.4 0.054 1.2E-06 44.4 17.8 128 304-434 86-213 (251)
181 PF13525 YfiO: Outer membrane 97.4 0.048 1E-06 47.2 19.1 170 137-326 8-197 (203)
182 KOG2041 WD40 repeat protein [G 97.4 0.19 4E-06 49.9 25.5 134 147-297 747-903 (1189)
183 PF06239 ECSIT: Evolutionarily 97.3 0.0019 4.1E-08 54.4 9.4 88 235-322 45-153 (228)
184 PRK10866 outer membrane biogen 97.3 0.11 2.3E-06 46.4 21.6 58 278-336 38-98 (243)
185 CHL00033 ycf3 photosystem I as 97.3 0.009 1.9E-07 50.0 13.5 94 133-227 34-137 (168)
186 PRK10153 DNA-binding transcrip 97.3 0.017 3.6E-07 57.5 17.3 146 336-490 331-490 (517)
187 PRK10803 tol-pal system protei 97.2 0.011 2.3E-07 53.2 13.7 100 135-234 144-248 (263)
188 PF04840 Vps16_C: Vps16, C-ter 97.2 0.18 3.9E-06 46.8 23.9 124 345-498 180-303 (319)
189 PF13414 TPR_11: TPR repeat; P 97.2 0.0014 3E-08 45.4 6.5 64 133-196 2-66 (69)
190 KOG0550 Molecular chaperone (D 97.2 0.051 1.1E-06 50.3 17.6 298 170-498 51-369 (486)
191 PF06239 ECSIT: Evolutionarily 97.2 0.012 2.7E-07 49.7 12.6 108 304-432 44-156 (228)
192 PF14559 TPR_19: Tetratricopep 97.2 0.0011 2.4E-08 45.7 5.6 49 217-265 5-53 (68)
193 PF12688 TPR_5: Tetratrico pep 97.2 0.032 7E-07 43.2 14.0 85 280-366 9-99 (120)
194 COG4235 Cytochrome c biogenesi 97.2 0.024 5.2E-07 50.5 14.9 101 200-301 153-256 (287)
195 KOG2796 Uncharacterized conser 97.1 0.047 1E-06 47.4 15.2 143 274-421 179-326 (366)
196 PF13432 TPR_16: Tetratricopep 97.1 0.0025 5.3E-08 43.5 6.5 49 215-263 9-57 (65)
197 PF12921 ATP13: Mitochondrial 97.0 0.014 3E-07 45.7 10.8 50 410-460 48-97 (126)
198 KOG2796 Uncharacterized conser 97.0 0.16 3.5E-06 44.2 17.5 153 289-455 166-323 (366)
199 KOG0553 TPR repeat-containing 97.0 0.018 3.9E-07 51.0 12.0 103 176-281 89-191 (304)
200 COG4700 Uncharacterized protei 96.9 0.17 3.7E-06 41.6 18.4 135 339-478 86-220 (251)
201 PRK10803 tol-pal system protei 96.9 0.035 7.5E-07 49.9 14.1 101 380-486 145-250 (263)
202 COG4235 Cytochrome c biogenesi 96.9 0.059 1.3E-06 48.1 14.8 104 232-337 151-257 (287)
203 PF13414 TPR_11: TPR repeat; P 96.8 0.0048 1E-07 42.6 6.4 61 451-513 3-65 (69)
204 KOG2280 Vacuolar assembly/sort 96.8 0.66 1.4E-05 46.7 30.9 138 127-265 425-574 (829)
205 PF08631 SPO22: Meiosis protei 96.7 0.45 9.7E-06 43.6 26.1 122 145-266 4-150 (278)
206 PF13525 YfiO: Outer membrane 96.7 0.32 6.9E-06 42.1 18.3 65 170-234 7-73 (203)
207 KOG0550 Molecular chaperone (D 96.7 0.51 1.1E-05 44.1 23.8 279 134-443 49-349 (486)
208 PF13371 TPR_9: Tetratricopept 96.7 0.011 2.5E-07 41.3 7.5 56 142-197 3-58 (73)
209 KOG1130 Predicted G-alpha GTPa 96.7 0.033 7.1E-07 51.5 11.7 133 380-513 197-342 (639)
210 PF03704 BTAD: Bacterial trans 96.6 0.02 4.2E-07 46.7 9.6 71 136-206 64-139 (146)
211 KOG1538 Uncharacterized conser 96.6 0.82 1.8E-05 45.2 23.0 41 185-228 617-657 (1081)
212 COG4105 ComL DNA uptake lipopr 96.6 0.43 9.2E-06 41.8 20.2 182 134-336 35-233 (254)
213 PF13281 DUF4071: Domain of un 96.6 0.58 1.3E-05 44.0 19.6 71 143-213 150-227 (374)
214 PF07079 DUF1347: Protein of u 96.5 0.79 1.7E-05 43.4 31.6 137 75-215 20-179 (549)
215 PF13281 DUF4071: Domain of un 96.4 0.83 1.8E-05 43.0 20.5 76 207-282 145-227 (374)
216 PF12921 ATP13: Mitochondrial 96.4 0.055 1.2E-06 42.3 10.3 101 306-427 1-101 (126)
217 PF04053 Coatomer_WDAD: Coatom 96.4 0.11 2.5E-06 50.4 14.5 55 202-264 346-400 (443)
218 PF04053 Coatomer_WDAD: Coatom 96.4 0.17 3.7E-06 49.3 15.6 154 147-333 274-428 (443)
219 COG3898 Uncharacterized membra 96.4 0.84 1.8E-05 42.4 33.1 305 113-443 68-391 (531)
220 COG1729 Uncharacterized protei 96.3 0.13 2.9E-06 45.3 12.9 105 135-240 143-252 (262)
221 PF03704 BTAD: Bacterial trans 96.3 0.022 4.8E-07 46.3 7.8 51 212-262 71-121 (146)
222 COG5107 RNA14 Pre-mRNA 3'-end 96.2 1.1 2.4E-05 42.4 32.4 144 344-497 399-546 (660)
223 PRK15331 chaperone protein Sic 96.2 0.19 4.2E-06 40.8 12.6 90 175-265 44-133 (165)
224 PF13512 TPR_18: Tetratricopep 96.2 0.15 3.2E-06 40.4 11.6 76 141-216 17-95 (142)
225 PF04840 Vps16_C: Vps16, C-ter 96.2 1 2.2E-05 41.8 32.3 103 310-434 180-282 (319)
226 smart00299 CLH Clathrin heavy 96.2 0.4 8.6E-06 38.6 14.8 12 134-145 41-52 (140)
227 KOG1538 Uncharacterized conser 96.2 0.8 1.7E-05 45.3 18.6 22 457-478 779-800 (1081)
228 PF13371 TPR_9: Tetratricopept 96.2 0.027 5.9E-07 39.3 6.9 20 459-478 37-56 (73)
229 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.15 3.3E-06 48.6 13.1 67 131-197 72-141 (453)
230 COG3118 Thioredoxin domain-con 96.1 0.42 9.2E-06 42.7 14.9 121 144-265 144-264 (304)
231 KOG0543 FKBP-type peptidyl-pro 96.0 0.099 2.2E-06 48.6 11.3 109 140-249 214-337 (397)
232 KOG1585 Protein required for f 96.0 0.9 2E-05 39.4 16.5 208 134-366 31-251 (308)
233 PF13424 TPR_12: Tetratricopep 96.0 0.028 6E-07 39.9 6.3 61 274-334 7-73 (78)
234 PF13424 TPR_12: Tetratricopep 96.0 0.015 3.2E-07 41.3 4.9 60 135-194 6-72 (78)
235 KOG2280 Vacuolar assembly/sort 96.0 2.1 4.6E-05 43.3 28.8 342 92-477 424-796 (829)
236 COG3118 Thioredoxin domain-con 96.0 1.1 2.4E-05 40.1 18.5 148 316-470 143-291 (304)
237 PRK11906 transcriptional regul 95.8 0.76 1.7E-05 44.1 16.3 147 149-297 273-432 (458)
238 PF10300 DUF3808: Protein of u 95.8 0.6 1.3E-05 46.2 16.6 163 347-514 193-375 (468)
239 COG5107 RNA14 Pre-mRNA 3'-end 95.8 1.8 4E-05 41.1 21.4 146 272-425 397-546 (660)
240 PRK15331 chaperone protein Sic 95.7 0.094 2E-06 42.6 8.6 87 144-231 47-133 (165)
241 PF10300 DUF3808: Protein of u 95.6 0.84 1.8E-05 45.2 16.7 113 251-366 247-371 (468)
242 PLN03098 LPA1 LOW PSII ACCUMUL 95.5 0.29 6.3E-06 46.7 12.5 66 201-266 73-141 (453)
243 COG1729 Uncharacterized protei 95.5 0.28 6.2E-06 43.3 11.4 95 380-479 144-243 (262)
244 smart00299 CLH Clathrin heavy 95.5 1.1 2.3E-05 36.1 15.1 41 313-354 13-53 (140)
245 KOG3941 Intermediate in Toll s 95.4 0.14 3.1E-06 45.0 9.2 84 251-334 86-186 (406)
246 PF09205 DUF1955: Domain of un 95.2 1.1 2.5E-05 34.7 15.4 140 178-338 12-151 (161)
247 KOG2610 Uncharacterized conser 95.1 2.1 4.6E-05 39.0 15.6 154 178-333 113-273 (491)
248 PF13428 TPR_14: Tetratricopep 95.0 0.075 1.6E-06 32.7 4.8 37 136-172 3-39 (44)
249 KOG0543 FKBP-type peptidyl-pro 94.9 1.5 3.2E-05 41.2 14.6 61 380-443 259-319 (397)
250 PF04097 Nic96: Nup93/Nic96; 94.9 5.5 0.00012 41.1 23.3 62 137-198 114-182 (613)
251 COG4649 Uncharacterized protei 94.9 1.8 3.9E-05 35.5 13.4 132 134-266 59-196 (221)
252 KOG2114 Vacuolar assembly/sort 94.8 1.3 2.7E-05 45.4 15.0 171 174-366 340-514 (933)
253 PF04184 ST7: ST7 protein; In 94.8 4.2 9E-05 39.4 19.8 55 140-196 174-228 (539)
254 PF09205 DUF1955: Domain of un 94.6 1.7 3.6E-05 33.8 13.8 65 415-482 87-151 (161)
255 COG3629 DnrI DNA-binding trans 94.5 0.5 1.1E-05 42.4 10.4 78 135-212 154-236 (280)
256 PF13929 mRNA_stabil: mRNA sta 94.5 1.9 4E-05 38.7 13.7 116 394-509 144-261 (292)
257 KOG1585 Protein required for f 94.4 3.2 6.9E-05 36.2 16.1 203 171-400 34-249 (308)
258 PRK11906 transcriptional regul 94.2 3.8 8.2E-05 39.5 16.0 95 377-476 337-432 (458)
259 PF13170 DUF4003: Protein of u 94.0 2.8 6.1E-05 38.5 14.7 129 184-314 78-224 (297)
260 KOG3941 Intermediate in Toll s 94.0 2.6 5.6E-05 37.5 13.4 106 306-432 66-176 (406)
261 PF10602 RPN7: 26S proteasome 93.8 3.5 7.6E-05 34.6 14.0 95 135-229 37-139 (177)
262 PF13428 TPR_14: Tetratricopep 93.8 0.2 4.3E-06 30.7 4.8 17 212-228 10-26 (44)
263 KOG4555 TPR repeat-containing 93.8 1.5 3.3E-05 33.9 10.2 90 247-337 53-145 (175)
264 KOG4555 TPR repeat-containing 93.7 1.7 3.7E-05 33.7 10.3 90 213-302 53-145 (175)
265 KOG1941 Acetylcholine receptor 93.5 3.2 6.9E-05 38.3 13.4 45 249-293 18-64 (518)
266 PF04184 ST7: ST7 protein; In 93.3 8.5 0.00018 37.5 17.1 24 381-404 298-321 (539)
267 COG3629 DnrI DNA-binding trans 93.3 1 2.2E-05 40.5 10.1 76 240-316 156-236 (280)
268 PF13512 TPR_18: Tetratricopep 93.1 3.7 8E-05 32.7 12.9 61 389-450 21-82 (142)
269 PF02284 COX5A: Cytochrome c o 93.1 1.8 4E-05 31.8 9.2 60 186-245 28-87 (108)
270 KOG2610 Uncharacterized conser 93.1 3.4 7.3E-05 37.8 12.8 152 144-297 113-272 (491)
271 COG0457 NrfG FOG: TPR repeat [ 92.9 5.7 0.00012 34.4 29.2 96 237-333 59-156 (291)
272 COG4649 Uncharacterized protei 92.9 4.6 9.9E-05 33.2 13.7 125 177-301 67-196 (221)
273 KOG1941 Acetylcholine receptor 92.8 8 0.00017 35.9 15.7 46 214-259 17-65 (518)
274 KOG1258 mRNA processing protei 92.8 11 0.00024 37.4 30.1 130 136-266 47-180 (577)
275 PF07035 Mic1: Colon cancer-as 92.7 4.9 0.00011 33.1 15.3 37 329-365 16-52 (167)
276 COG4105 ComL DNA uptake lipopr 92.7 6.7 0.00014 34.6 18.9 186 97-301 32-233 (254)
277 PF10602 RPN7: 26S proteasome 92.6 3.2 6.9E-05 34.9 11.8 62 274-335 38-101 (177)
278 COG4785 NlpI Lipoprotein NlpI, 92.6 6.1 0.00013 33.8 15.5 161 133-301 98-266 (297)
279 KOG2114 Vacuolar assembly/sort 92.3 16 0.00034 38.0 25.7 144 139-298 373-516 (933)
280 COG0457 NrfG FOG: TPR repeat [ 92.1 7.3 0.00016 33.7 29.8 221 182-407 37-265 (291)
281 PF09613 HrpB1_HrpK: Bacterial 92.0 5.8 0.00013 32.3 13.3 13 285-297 57-69 (160)
282 PF07035 Mic1: Colon cancer-as 91.9 6.3 0.00014 32.5 14.8 134 188-335 14-148 (167)
283 KOG4570 Uncharacterized conser 91.8 0.97 2.1E-05 40.7 7.9 100 128-229 58-161 (418)
284 cd00923 Cyt_c_Oxidase_Va Cytoc 91.7 3.9 8.5E-05 29.8 9.3 63 183-245 22-84 (103)
285 PF13176 TPR_7: Tetratricopept 91.5 0.46 1E-05 27.5 4.0 23 275-297 2-24 (36)
286 PF08631 SPO22: Meiosis protei 91.5 11 0.00024 34.5 26.5 60 309-370 86-148 (278)
287 PF13431 TPR_17: Tetratricopep 91.5 0.24 5.2E-06 28.3 2.7 26 162-187 7-32 (34)
288 PF13176 TPR_7: Tetratricopept 91.3 0.53 1.1E-05 27.3 4.1 26 453-478 1-26 (36)
289 PF09613 HrpB1_HrpK: Bacterial 90.8 7.9 0.00017 31.6 14.0 64 134-197 7-73 (160)
290 KOG4570 Uncharacterized conser 90.6 1.9 4.2E-05 38.9 8.5 103 336-443 58-163 (418)
291 PF00515 TPR_1: Tetratricopept 90.4 0.69 1.5E-05 26.2 4.1 28 379-406 2-29 (34)
292 PF13170 DUF4003: Protein of u 90.1 15 0.00033 33.8 21.8 22 396-418 200-221 (297)
293 PF00515 TPR_1: Tetratricopept 89.9 0.86 1.9E-05 25.8 4.2 28 452-479 2-29 (34)
294 cd00923 Cyt_c_Oxidase_Va Cytoc 89.7 1.5 3.3E-05 31.9 5.9 59 436-496 28-86 (103)
295 COG4785 NlpI Lipoprotein NlpI, 89.5 13 0.00028 32.0 16.2 80 220-300 82-161 (297)
296 KOG0276 Vesicle coat complex C 89.2 6.2 0.00013 39.2 11.3 150 146-333 598-747 (794)
297 PF11207 DUF2989: Protein of u 88.9 14 0.0003 31.5 12.1 79 177-257 116-198 (203)
298 PF07719 TPR_2: Tetratricopept 88.7 1.2 2.5E-05 25.1 4.2 27 453-479 3-29 (34)
299 KOG1258 mRNA processing protei 88.6 28 0.00061 34.8 35.8 398 63-499 44-488 (577)
300 TIGR02561 HrpB1_HrpK type III 88.6 11 0.00025 30.2 12.3 17 249-265 56-72 (153)
301 PRK09687 putative lyase; Provi 88.5 20 0.00042 32.9 28.1 234 235-497 35-278 (280)
302 PF02284 COX5A: Cytochrome c o 87.9 2.4 5.1E-05 31.3 5.9 78 416-496 10-89 (108)
303 TIGR02561 HrpB1_HrpK type III 87.7 13 0.00028 29.8 14.3 65 134-198 7-74 (153)
304 PF13431 TPR_17: Tetratricopep 87.6 0.51 1.1E-05 27.0 2.1 23 234-256 10-32 (34)
305 KOG1550 Extracellular protein 87.6 35 0.00077 34.8 21.3 47 150-196 228-277 (552)
306 PF07719 TPR_2: Tetratricopept 87.6 1.4 3.1E-05 24.7 4.1 27 380-406 3-29 (34)
307 PF11207 DUF2989: Protein of u 85.9 8.6 0.00019 32.6 9.1 77 145-223 118-198 (203)
308 PF13374 TPR_10: Tetratricopep 85.0 2.5 5.4E-05 25.0 4.4 28 452-479 3-30 (42)
309 PRK15180 Vi polysaccharide bio 84.9 40 0.00086 32.8 25.1 119 147-266 302-420 (831)
310 KOG0276 Vesicle coat complex C 84.8 15 0.00033 36.6 11.3 97 318-438 648-744 (794)
311 PF13374 TPR_10: Tetratricopep 84.3 2.7 5.8E-05 24.9 4.3 28 379-406 3-30 (42)
312 KOG4077 Cytochrome c oxidase, 83.7 7.4 0.00016 30.0 7.0 59 186-244 67-125 (149)
313 KOG1550 Extracellular protein 83.7 55 0.0012 33.5 22.9 176 115-302 229-427 (552)
314 COG3947 Response regulator con 83.6 34 0.00073 31.0 16.9 70 274-344 281-355 (361)
315 COG1747 Uncharacterized N-term 83.3 49 0.0011 32.6 21.2 181 304-496 63-249 (711)
316 PF13181 TPR_8: Tetratricopept 82.6 2.5 5.3E-05 23.8 3.4 27 453-479 3-29 (34)
317 KOG1920 IkappaB kinase complex 82.0 86 0.0019 34.4 29.8 106 350-477 947-1052(1265)
318 COG4455 ImpE Protein of avirul 81.2 11 0.00024 32.4 7.8 74 138-211 5-80 (273)
319 KOG1464 COP9 signalosome, subu 80.9 41 0.00088 30.0 18.2 251 147-404 40-329 (440)
320 PF13181 TPR_8: Tetratricopept 80.9 2.9 6.3E-05 23.5 3.3 27 380-406 3-29 (34)
321 KOG1586 Protein required for f 80.6 39 0.00084 29.6 16.7 18 143-160 23-40 (288)
322 KOG1920 IkappaB kinase complex 80.6 96 0.0021 34.1 28.6 25 206-230 793-819 (1265)
323 PF00637 Clathrin: Region in C 80.4 0.87 1.9E-05 36.7 1.3 83 243-332 13-95 (143)
324 COG4455 ImpE Protein of avirul 80.3 14 0.0003 31.8 8.1 54 210-263 8-61 (273)
325 PF00637 Clathrin: Region in C 79.8 0.66 1.4E-05 37.4 0.4 84 384-477 13-96 (143)
326 PF13929 mRNA_stabil: mRNA sta 79.7 48 0.001 30.1 14.6 143 137-282 134-288 (292)
327 COG3947 Response regulator con 79.7 24 0.00051 31.9 9.7 57 241-298 283-339 (361)
328 PF07163 Pex26: Pex26 protein; 79.3 25 0.00054 31.6 9.7 86 175-260 90-181 (309)
329 TIGR03504 FimV_Cterm FimV C-te 79.2 4.7 0.0001 24.6 3.8 25 457-481 5-29 (44)
330 PF02259 FAT: FAT domain; Int 79.1 58 0.0013 30.8 22.6 66 270-335 144-212 (352)
331 PF07721 TPR_4: Tetratricopept 79.1 2.7 5.9E-05 22.1 2.5 19 139-157 6-24 (26)
332 KOG2066 Vacuolar assembly/sort 79.0 87 0.0019 32.7 24.1 23 277-299 510-532 (846)
333 PF13174 TPR_6: Tetratricopept 78.9 2.6 5.6E-05 23.4 2.6 25 172-196 4-28 (33)
334 KOG4507 Uncharacterized conser 78.7 26 0.00056 35.0 10.4 162 83-248 554-721 (886)
335 PF13174 TPR_6: Tetratricopept 78.7 3.9 8.5E-05 22.6 3.4 26 208-233 5-30 (33)
336 COG2909 MalT ATP-dependent tra 78.5 96 0.0021 32.9 23.9 90 318-407 426-526 (894)
337 TIGR02508 type_III_yscG type I 78.3 17 0.00038 26.8 7.0 85 114-206 21-105 (115)
338 PF09797 NatB_MDM20: N-acetylt 78.2 14 0.0003 35.4 8.9 67 139-205 185-254 (365)
339 PF06552 TOM20_plant: Plant sp 78.2 33 0.00071 28.7 9.5 43 288-338 96-138 (186)
340 PRK11619 lytic murein transgly 78.0 93 0.002 32.5 31.8 117 355-478 254-373 (644)
341 PF11663 Toxin_YhaV: Toxin wit 77.5 2.2 4.7E-05 33.3 2.5 34 461-496 105-138 (140)
342 COG1747 Uncharacterized N-term 75.8 86 0.0019 31.0 25.1 182 269-461 63-249 (711)
343 KOG0890 Protein kinase of the 75.8 1.9E+02 0.004 34.8 26.5 321 140-480 1389-1731(2382)
344 KOG2063 Vacuolar assembly/sort 75.4 1.2E+02 0.0027 32.6 19.6 39 246-284 600-638 (877)
345 PF07163 Pex26: Pex26 protein; 74.8 50 0.0011 29.8 10.3 88 243-330 89-181 (309)
346 TIGR03504 FimV_Cterm FimV C-te 74.5 7.7 0.00017 23.7 3.9 23 243-265 5-27 (44)
347 KOG4507 Uncharacterized conser 74.4 41 0.00089 33.7 10.5 130 220-351 590-719 (886)
348 KOG0991 Replication factor C, 74.3 60 0.0013 28.5 12.9 21 465-485 252-272 (333)
349 PF09477 Type_III_YscG: Bacter 74.2 35 0.00075 25.7 8.9 87 322-418 21-107 (116)
350 KOG4077 Cytochrome c oxidase, 74.1 14 0.00031 28.5 5.9 57 436-494 70-126 (149)
351 KOG4234 TPR repeat-containing 73.2 51 0.0011 28.1 9.4 95 385-487 102-202 (271)
352 TIGR02508 type_III_yscG type I 73.2 35 0.00076 25.3 8.8 86 323-418 21-106 (115)
353 KOG4648 Uncharacterized conser 73.0 11 0.00023 34.8 6.0 52 175-228 104-156 (536)
354 PF02259 FAT: FAT domain; Int 72.9 86 0.0019 29.6 24.0 65 377-443 145-212 (352)
355 PF10579 Rapsyn_N: Rapsyn N-te 71.9 13 0.00027 26.1 4.8 47 426-473 18-65 (80)
356 KOG4234 TPR repeat-containing 71.7 63 0.0014 27.6 10.2 87 144-231 105-196 (271)
357 COG5159 RPN6 26S proteasome re 71.3 80 0.0017 28.6 11.1 192 175-366 10-230 (421)
358 PF07575 Nucleopor_Nup85: Nup8 71.2 1.3E+02 0.0028 31.0 17.3 34 463-496 507-540 (566)
359 COG5159 RPN6 26S proteasome re 71.1 74 0.0016 28.8 10.5 125 242-366 8-149 (421)
360 KOG2396 HAT (Half-A-TPR) repea 70.7 1.1E+02 0.0025 30.1 34.2 95 411-509 456-553 (568)
361 cd00280 TRFH Telomeric Repeat 69.9 40 0.00086 28.2 8.0 64 150-216 85-156 (200)
362 PF10345 Cohesin_load: Cohesin 69.3 1.5E+02 0.0032 30.9 34.5 183 151-334 38-252 (608)
363 KOG0686 COP9 signalosome, subu 68.9 1.1E+02 0.0024 29.3 14.4 64 134-197 150-216 (466)
364 KOG4648 Uncharacterized conser 68.8 37 0.00081 31.4 8.4 93 211-306 105-197 (536)
365 PF10366 Vps39_1: Vacuolar sor 67.2 37 0.00081 25.7 7.1 27 274-300 41-67 (108)
366 PF06552 TOM20_plant: Plant sp 66.8 20 0.00042 29.9 5.8 62 150-213 51-123 (186)
367 smart00028 TPR Tetratricopepti 66.2 13 0.00028 19.5 3.7 26 381-406 4-29 (34)
368 PF11846 DUF3366: Domain of un 65.8 32 0.00069 29.4 7.4 37 446-484 139-175 (193)
369 PRK10941 hypothetical protein; 65.8 1.1E+02 0.0023 27.9 11.1 77 382-461 185-261 (269)
370 PF11848 DUF3368: Domain of un 64.6 30 0.00064 21.6 5.1 35 460-494 11-45 (48)
371 PF14853 Fis1_TPR_C: Fis1 C-te 64.6 29 0.00062 22.3 5.1 38 457-496 7-44 (53)
372 PF12862 Apc5: Anaphase-promot 64.6 37 0.0008 24.9 6.6 51 146-196 10-69 (94)
373 PF09454 Vps23_core: Vps23 cor 64.1 10 0.00022 25.6 3.1 51 132-182 6-56 (65)
374 PRK14956 DNA polymerase III su 64.0 1.4E+02 0.0029 29.8 11.9 41 119-161 187-227 (484)
375 PF14561 TPR_20: Tetratricopep 63.8 54 0.0012 23.8 8.3 58 161-218 15-73 (90)
376 PF10366 Vps39_1: Vacuolar sor 63.1 61 0.0013 24.6 7.6 27 380-406 41-67 (108)
377 PF01347 Vitellogenin_N: Lipop 63.0 2E+02 0.0043 30.0 18.2 92 101-195 347-440 (618)
378 KOG4642 Chaperone-dependent E3 62.8 1.1E+02 0.0024 27.0 10.5 113 180-294 22-139 (284)
379 KOG0890 Protein kinase of the 62.2 3.5E+02 0.0077 32.7 31.3 315 174-513 1389-1729(2382)
380 KOG0686 COP9 signalosome, subu 62.2 1.5E+02 0.0033 28.4 15.0 28 377-406 305-332 (466)
381 PF10475 DUF2450: Protein of u 61.0 1.4E+02 0.003 27.6 12.1 27 411-437 194-220 (291)
382 PF14853 Fis1_TPR_C: Fis1 C-te 60.0 37 0.0008 21.8 5.0 35 383-420 6-40 (53)
383 KOG1464 COP9 signalosome, subu 60.0 1.3E+02 0.0028 27.0 21.3 48 181-228 40-90 (440)
384 PF14689 SPOB_a: Sensor_kinase 59.3 28 0.00061 23.2 4.6 25 275-299 26-50 (62)
385 PF10579 Rapsyn_N: Rapsyn N-te 59.0 38 0.00083 23.8 5.2 51 458-509 14-66 (80)
386 PRK09687 putative lyase; Provi 58.2 1.5E+02 0.0033 27.1 29.0 218 201-443 35-262 (280)
387 PF11846 DUF3366: Domain of un 57.0 54 0.0012 27.9 7.3 43 470-514 130-172 (193)
388 cd08819 CARD_MDA5_2 Caspase ac 56.8 72 0.0016 23.0 7.0 41 155-195 23-63 (88)
389 PRK15180 Vi polysaccharide bio 56.8 2E+02 0.0044 28.2 25.8 109 83-197 312-420 (831)
390 PHA02875 ankyrin repeat protei 55.8 2.1E+02 0.0044 27.9 14.3 140 212-366 8-156 (413)
391 PF08424 NRDE-2: NRDE-2, neces 54.8 1.9E+02 0.004 27.2 16.6 61 186-247 49-109 (321)
392 PF14689 SPOB_a: Sensor_kinase 54.7 34 0.00073 22.8 4.4 21 457-477 29-49 (62)
393 KOG0991 Replication factor C, 54.3 1.6E+02 0.0034 26.1 12.0 47 269-317 236-282 (333)
394 COG0735 Fur Fe2+/Zn2+ uptake r 53.8 90 0.002 25.2 7.6 32 278-309 26-57 (145)
395 PRK10564 maltose regulon perip 53.5 27 0.00059 31.8 4.9 42 376-418 254-296 (303)
396 PF10255 Paf67: RNA polymerase 53.4 2.2E+02 0.0048 27.6 16.0 103 162-264 67-191 (404)
397 PRK10564 maltose regulon perip 53.4 28 0.00061 31.7 4.9 28 240-267 260-287 (303)
398 PF11663 Toxin_YhaV: Toxin wit 52.3 19 0.0004 28.3 3.2 33 248-282 106-138 (140)
399 COG2976 Uncharacterized protei 51.9 1.5E+02 0.0033 25.3 14.6 21 459-479 167-187 (207)
400 KOG2908 26S proteasome regulat 51.3 2E+02 0.0042 27.0 9.8 54 425-479 86-143 (380)
401 KOG4642 Chaperone-dependent E3 51.2 1.8E+02 0.0038 25.8 11.2 119 352-477 20-143 (284)
402 PF11848 DUF3368: Domain of un 50.9 59 0.0013 20.3 5.0 37 175-211 9-45 (48)
403 KOG0687 26S proteasome regulat 50.7 2.1E+02 0.0046 26.6 12.6 88 122-211 58-151 (393)
404 PF04190 DUF410: Protein of un 50.6 1.9E+02 0.0042 26.1 20.3 100 146-260 2-113 (260)
405 KOG2297 Predicted translation 50.1 2.1E+02 0.0045 26.4 19.1 117 303-433 219-340 (412)
406 PF11817 Foie-gras_1: Foie gra 49.3 90 0.002 27.9 7.7 19 422-441 186-204 (247)
407 cd00280 TRFH Telomeric Repeat 49.2 1.2E+02 0.0027 25.4 7.6 21 245-265 119-139 (200)
408 PF13762 MNE1: Mitochondrial s 49.1 1.4E+02 0.003 24.1 10.6 79 206-284 42-127 (145)
409 PF08424 NRDE-2: NRDE-2, neces 48.9 2.3E+02 0.005 26.5 17.6 27 387-413 163-189 (321)
410 COG0735 Fur Fe2+/Zn2+ uptake r 48.8 99 0.0021 24.9 7.1 61 441-502 11-71 (145)
411 COG2976 Uncharacterized protei 48.1 1.8E+02 0.0038 24.9 15.9 88 315-408 97-189 (207)
412 smart00386 HAT HAT (Half-A-TPR 47.6 38 0.00082 18.1 3.4 9 220-228 4-12 (33)
413 PRK10941 hypothetical protein; 47.4 2.2E+02 0.0048 25.9 10.7 75 172-247 185-261 (269)
414 PF12862 Apc5: Anaphase-promot 47.2 94 0.002 22.7 6.3 21 386-406 49-69 (94)
415 COG2909 MalT ATP-dependent tra 47.1 4E+02 0.0086 28.7 28.9 225 283-511 426-684 (894)
416 PF08311 Mad3_BUB1_I: Mad3/BUB 46.7 98 0.0021 24.2 6.6 42 152-193 81-124 (126)
417 PHA02875 ankyrin repeat protei 46.3 2.9E+02 0.0063 26.9 14.2 16 212-227 74-89 (413)
418 KOG2297 Predicted translation 46.3 2.4E+02 0.0052 26.0 15.0 17 95-111 106-122 (412)
419 PF13762 MNE1: Mitochondrial s 45.9 1.6E+02 0.0034 23.8 10.5 44 309-352 81-125 (145)
420 PF07575 Nucleopor_Nup85: Nup8 45.5 1.1E+02 0.0023 31.5 8.5 91 272-366 372-462 (566)
421 KOG0376 Serine-threonine phosp 45.4 54 0.0012 32.0 5.7 102 387-497 13-116 (476)
422 KOG2300 Uncharacterized conser 44.7 3.3E+02 0.0071 27.0 32.0 91 102-192 51-151 (629)
423 PRK07003 DNA polymerase III su 44.4 4.2E+02 0.009 28.4 12.1 95 104-201 164-278 (830)
424 PF09868 DUF2095: Uncharacteri 44.1 84 0.0018 23.8 5.3 34 140-173 67-100 (128)
425 PF03745 DUF309: Domain of unk 43.8 96 0.0021 20.7 5.5 49 461-509 9-62 (62)
426 PF10345 Cohesin_load: Cohesin 43.8 4E+02 0.0086 27.8 38.5 407 105-514 67-605 (608)
427 COG5108 RPO41 Mitochondrial DN 43.8 1.5E+02 0.0033 30.5 8.5 75 173-249 33-115 (1117)
428 KOG2034 Vacuolar sorting prote 43.5 4.5E+02 0.0097 28.3 26.5 49 142-194 366-415 (911)
429 PF10475 DUF2450: Protein of u 42.7 2.5E+02 0.0054 25.9 9.7 52 243-300 104-155 (291)
430 PRK13800 putative oxidoreducta 42.4 5.1E+02 0.011 28.6 29.5 233 234-499 632-865 (897)
431 smart00777 Mad3_BUB1_I Mad3/BU 41.7 1.7E+02 0.0036 23.0 7.0 43 468-510 80-123 (125)
432 PRK09857 putative transposase; 41.5 2.2E+02 0.0048 26.2 9.1 24 283-306 251-274 (292)
433 KOG2063 Vacuolar assembly/sort 39.9 5.3E+02 0.011 28.1 19.3 28 274-301 506-533 (877)
434 KOG2659 LisH motif-containing 39.9 2.6E+02 0.0057 24.5 9.1 100 338-442 22-130 (228)
435 PRK08691 DNA polymerase III su 39.6 3.8E+02 0.0082 28.3 11.0 85 115-202 181-279 (709)
436 KOG1586 Protein required for f 39.6 2.7E+02 0.0059 24.7 22.4 14 181-194 27-40 (288)
437 PRK07003 DNA polymerase III su 39.4 3.9E+02 0.0085 28.6 11.0 72 94-166 194-277 (830)
438 PF11838 ERAP1_C: ERAP1-like C 39.4 3.2E+02 0.0069 25.4 13.4 110 150-262 146-262 (324)
439 PRK14951 DNA polymerase III su 39.0 4.1E+02 0.0089 27.7 11.2 95 105-202 170-284 (618)
440 PF04910 Tcf25: Transcriptiona 38.9 3.6E+02 0.0078 25.8 15.6 54 458-511 110-164 (360)
441 PF09477 Type_III_YscG: Bacter 38.9 1.7E+02 0.0037 22.1 10.4 80 182-267 20-99 (116)
442 PRK13342 recombination factor 38.6 3.9E+02 0.0084 26.2 18.6 22 286-307 244-265 (413)
443 KOG4567 GTPase-activating prot 38.2 3.3E+02 0.0071 25.2 9.7 43 399-443 264-306 (370)
444 KOG3364 Membrane protein invol 38.2 2.1E+02 0.0045 22.9 10.2 67 412-479 30-99 (149)
445 COG2256 MGS1 ATPase related to 37.7 3.9E+02 0.0084 25.9 14.5 48 234-281 243-293 (436)
446 KOG4521 Nuclear pore complex, 37.0 6.5E+02 0.014 28.3 13.7 79 274-359 985-1071(1480)
447 KOG0292 Vesicle coat complex C 36.5 4.2E+02 0.0091 28.6 10.5 183 176-408 601-783 (1202)
448 PF09670 Cas_Cas02710: CRISPR- 36.0 4.1E+02 0.0089 25.7 12.8 18 249-266 143-160 (379)
449 KOG1114 Tripeptidyl peptidase 35.4 6.3E+02 0.014 27.6 14.2 47 309-355 1233-1280(1304)
450 PF09868 DUF2095: Uncharacteri 35.3 1.7E+02 0.0037 22.3 5.7 41 456-497 66-106 (128)
451 PF04762 IKI3: IKI3 family; I 35.2 6.6E+02 0.014 27.9 18.4 23 172-194 698-720 (928)
452 PRK06645 DNA polymerase III su 35.2 4.7E+02 0.01 26.5 10.8 83 118-203 193-292 (507)
453 KOG2659 LisH motif-containing 35.0 3.1E+02 0.0068 24.0 9.7 100 374-478 22-130 (228)
454 KOG4567 GTPase-activating prot 34.8 2.8E+02 0.0061 25.6 8.1 22 52-73 46-67 (370)
455 COG4003 Uncharacterized protei 34.8 1.4E+02 0.003 21.1 4.9 32 140-171 37-68 (98)
456 PF12926 MOZART2: Mitotic-spin 34.4 1.8E+02 0.0038 21.0 7.8 44 119-163 29-72 (88)
457 KOG4521 Nuclear pore complex, 34.4 7.1E+02 0.015 28.0 14.8 25 455-479 1374-1398(1480)
458 smart00804 TAP_C C-terminal do 34.3 43 0.00093 22.4 2.4 24 391-414 38-61 (63)
459 PF02184 HAT: HAT (Half-A-TPR) 34.1 90 0.002 17.6 3.2 22 394-418 3-24 (32)
460 KOG0687 26S proteasome regulat 34.1 4E+02 0.0086 25.0 14.6 133 94-228 64-206 (393)
461 KOG1308 Hsp70-interacting prot 33.9 41 0.00088 31.3 2.9 89 216-306 127-216 (377)
462 KOG3677 RNA polymerase I-assoc 33.6 4.4E+02 0.0095 25.6 9.4 58 241-299 239-299 (525)
463 PF07678 A2M_comp: A-macroglob 33.5 2.2E+02 0.0049 25.4 7.7 17 319-335 204-220 (246)
464 PF02607 B12-binding_2: B12 bi 33.4 71 0.0015 22.3 3.7 36 463-498 13-48 (79)
465 COG5108 RPO41 Mitochondrial DN 33.3 3.1E+02 0.0068 28.4 8.9 90 208-300 33-131 (1117)
466 PRK12323 DNA polymerase III su 33.3 5.8E+02 0.013 26.9 11.0 94 104-200 169-282 (700)
467 KOG0292 Vesicle coat complex C 33.2 1.5E+02 0.0033 31.6 7.0 78 137-231 623-700 (1202)
468 PF03745 DUF309: Domain of unk 33.1 1.5E+02 0.0032 19.7 5.3 15 285-299 12-26 (62)
469 PRK11639 zinc uptake transcrip 32.3 2.9E+02 0.0064 22.9 7.7 55 445-500 20-74 (169)
470 cd07153 Fur_like Ferric uptake 32.3 1.2E+02 0.0025 23.1 5.0 38 463-500 12-49 (116)
471 PF09454 Vps23_core: Vps23 cor 31.9 1E+02 0.0022 20.9 3.9 32 271-302 7-38 (65)
472 PF09670 Cas_Cas02710: CRISPR- 31.8 4.8E+02 0.01 25.2 12.2 54 175-229 138-195 (379)
473 PF00244 14-3-3: 14-3-3 protei 31.8 3.7E+02 0.008 23.9 11.0 40 174-213 7-46 (236)
474 PF12926 MOZART2: Mitotic-spin 31.8 2E+02 0.0043 20.8 8.0 42 293-334 29-70 (88)
475 COG2178 Predicted RNA-binding 31.6 3.3E+02 0.0071 23.3 9.4 15 320-334 134-148 (204)
476 PF04190 DUF410: Protein of un 31.1 4E+02 0.0087 24.1 19.8 27 340-366 88-114 (260)
477 PF04124 Dor1: Dor1-like famil 30.6 2.2E+02 0.0048 26.9 7.5 20 347-366 111-130 (338)
478 PF11817 Foie-gras_1: Foie gra 30.5 1.8E+02 0.0039 26.0 6.6 52 175-226 185-241 (247)
479 COG4003 Uncharacterized protei 30.1 2E+02 0.0044 20.3 5.3 26 456-481 36-61 (98)
480 PF13934 ELYS: Nuclear pore co 29.9 3.9E+02 0.0084 23.5 17.0 116 354-487 90-205 (226)
481 KOG2168 Cullins [Cell cycle co 29.5 7.4E+02 0.016 26.7 20.4 90 385-479 629-735 (835)
482 PRK11639 zinc uptake transcrip 29.4 3.3E+02 0.0072 22.6 7.7 34 286-319 39-72 (169)
483 cd08819 CARD_MDA5_2 Caspase ac 29.4 2.2E+02 0.0048 20.6 7.4 13 321-333 50-62 (88)
484 PRK08691 DNA polymerase III su 29.2 7.2E+02 0.016 26.4 11.8 48 358-407 180-227 (709)
485 KOG1114 Tripeptidyl peptidase 29.1 8E+02 0.017 26.9 14.2 15 220-234 1092-1106(1304)
486 COG0790 FOG: TPR repeat, SEL1 29.0 4.5E+02 0.0097 24.0 24.5 16 287-302 206-221 (292)
487 PF11123 DNA_Packaging_2: DNA 28.9 2E+02 0.0044 19.9 5.0 32 218-249 12-43 (82)
488 PRK09857 putative transposase; 28.8 4.4E+02 0.0096 24.3 8.9 29 313-341 246-274 (292)
489 cd08787 CARD_NOD2_1_CARD15 Cas 28.7 2.1E+02 0.0046 20.2 5.0 57 138-198 6-64 (87)
490 PF01475 FUR: Ferric uptake re 28.0 1.1E+02 0.0025 23.5 4.3 46 456-501 12-57 (120)
491 COG4259 Uncharacterized protei 28.0 2.6E+02 0.0056 20.8 6.6 44 151-194 54-98 (121)
492 KOG1308 Hsp70-interacting prot 28.0 45 0.00098 31.0 2.2 89 181-270 127-215 (377)
493 COG0790 FOG: TPR repeat, SEL1 27.8 4.7E+02 0.01 23.8 23.9 17 180-196 53-69 (292)
494 KOG0376 Serine-threonine phosp 27.7 1.6E+02 0.0034 29.0 5.8 51 146-196 16-66 (476)
495 PRK09462 fur ferric uptake reg 27.5 3.3E+02 0.0071 21.9 7.3 56 445-501 11-67 (148)
496 PF09797 NatB_MDM20: N-acetylt 27.3 5.6E+02 0.012 24.5 22.3 68 313-382 186-256 (365)
497 COG5071 RPN5 26S proteasome re 26.7 5.1E+02 0.011 23.9 9.0 168 272-443 52-240 (439)
498 PRK14958 DNA polymerase III su 26.7 6.9E+02 0.015 25.4 13.0 80 119-201 185-278 (509)
499 PF09986 DUF2225: Uncharacteri 25.7 4E+02 0.0086 23.3 7.6 62 150-211 141-208 (214)
500 PHA03100 ankyrin repeat protei 25.5 6.7E+02 0.015 24.9 12.3 209 188-413 48-277 (480)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.7e-68 Score=559.41 Aligned_cols=463 Identities=17% Similarity=0.222 Sum_probs=432.4
Q ss_pred CCCccccccccccccccccCCCcc-cccccccCCCCChhhHHHHHHH-hcCCCCHHH--HHHHhhccccCCCCcCCHHHH
Q 010215 28 SSENCSHIVSSSPIESYCSDGARL-DHHQVLCVDSPRLPDIDVIISK-VHVGSSEDE--VFQSLKQDHVCNAIQPSHYLV 103 (515)
Q Consensus 28 ~~~~~~~~~~~~l~~~y~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~--~~~~~~~~~~~~g~~p~~~~~ 103 (515)
.+..++.++.|+||++|+|+|... +...|+.|+.||+++||++|.. .+.+...++ +|+.|.+. |+.||..||
T Consensus 216 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~----g~~Pd~~ty 291 (857)
T PLN03077 216 FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL----SVDPDLMTI 291 (857)
T ss_pred cCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCChhHH
Confidence 455678999999999999999875 7888999999999999999964 555555544 67777765 999999999
Q ss_pred HHHHHHhh--hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 010215 104 NKLIHRFK--DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGA 181 (515)
Q Consensus 104 ~~ll~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 181 (515)
+.+|.+|. ++.+.|.+++..+. +.|+.||..+|++|+++|+++|++++|.++|++|..++..+|+++ +.+|++.
T Consensus 292 ~~ll~a~~~~g~~~~a~~l~~~~~-~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~l---i~~~~~~ 367 (857)
T PLN03077 292 TSVISACELLGDERLGREMHGYVV-KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAM---ISGYEKN 367 (857)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHH-HhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHH---HHHHHhC
Confidence 99999997 48899999999994 679999999999999999999999999999999998888887776 8999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh-hcCCCCChhhHHHHHHHHHccCChhHHHHHH
Q 010215 182 GQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLEL-KSCIPPNAHTFNIFIHGWCKINRVDEAQWTI 260 (515)
Q Consensus 182 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 260 (515)
|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+ +.+..++..+||+|+++|+++|++++|.++|
T Consensus 368 g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf 447 (857)
T PLN03077 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447 (857)
T ss_pred CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999995 5689999999999999999999999999999
Q ss_pred HHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010215 261 QEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKP 340 (515)
Q Consensus 261 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 340 (515)
++|.+ +|..+|+++|.+|++.|+.++|+++|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.+
T Consensus 448 ~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~ 522 (857)
T PLN03077 448 HNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF 522 (857)
T ss_pred HhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCc
Confidence 99975 5889999999999999999999999999986 599999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHH
Q 010215 341 DSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPL 420 (515)
Q Consensus 341 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 420 (515)
|..++++||++|+++|++++|..+|+ .+ .||..+||++|.+|+++|+.++|+++|++|.+.| +.||..||+.+
T Consensus 523 ~~~~~naLi~~y~k~G~~~~A~~~f~-~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g-~~Pd~~T~~~l 595 (857)
T PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFN-SH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG-VNPDEVTFISL 595 (857)
T ss_pred cceechHHHHHHHHcCCHHHHHHHHH-hc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCcccHHHH
Confidence 99999999999999999999999999 66 4899999999999999999999999999999999 99999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010215 421 LKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKH 500 (515)
Q Consensus 421 l~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 500 (515)
+.+|++.|++++|. ++|+.|.+++|+.|+..+|++++++|++.|++++|.+++++| ++.||..+|.+|+.+|..+|
T Consensus 596 l~a~~~~g~v~ea~-~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~ 671 (857)
T PLN03077 596 LCACSRSGMVTQGL-EYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHR 671 (857)
T ss_pred HHHHhhcChHHHHH-HHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcC
Confidence 99999999999999 999999977999999999999999999999999999999999 58999999999999998888
Q ss_pred CHHHHHHHHHHHHh
Q 010215 501 MYDAAEKIEAVMKK 514 (515)
Q Consensus 501 ~~~~a~~~~~~m~~ 514 (515)
+.+.++.+.+.+.+
T Consensus 672 ~~e~~e~~a~~l~~ 685 (857)
T PLN03077 672 HVELGELAAQHIFE 685 (857)
T ss_pred ChHHHHHHHHHHHh
Confidence 88887777766554
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.9e-67 Score=553.12 Aligned_cols=465 Identities=15% Similarity=0.237 Sum_probs=405.0
Q ss_pred CCCccccccccccccccccCCCcc-cccccccCCCCChhhHHHHHHHh-cCCCCHHH--HHHHhhccccCCCCcCCHHHH
Q 010215 28 SSENCSHIVSSSPIESYCSDGARL-DHHQVLCVDSPRLPDIDVIISKV-HVGSSEDE--VFQSLKQDHVCNAIQPSHYLV 103 (515)
Q Consensus 28 ~~~~~~~~~~~~l~~~y~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~--~~~~~~~~~~~~g~~p~~~~~ 103 (515)
.+..++..++|+||++|+++|... +..+|+.|++||+++||++|..+ +.+...++ +|+.|... |+.||.+||
T Consensus 115 ~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~----g~~Pd~~t~ 190 (857)
T PLN03077 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWA----GVRPDVYTF 190 (857)
T ss_pred cCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCChhHH
Confidence 445577889999999999999875 88999999999999999999654 44444433 67777664 999999999
Q ss_pred HHHHHHhhh--CHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 010215 104 NKLIHRFKD--DWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGA 181 (515)
Q Consensus 104 ~~ll~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 181 (515)
+.+|++|++ ++..+.+++.++. +.|+.+|+.++++||++|+++|++++|.++|++|..++..+|+++ +.+|++.
T Consensus 191 ~~ll~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~l---i~~~~~~ 266 (857)
T PLN03077 191 PCVLRTCGGIPDLARGREVHAHVV-RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAM---ISGYFEN 266 (857)
T ss_pred HHHHHHhCCccchhhHHHHHHHHH-HcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHH---HHHHHhC
Confidence 999999974 7888999999995 679999999999999999999999999999999999888887776 8999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh-hcCCCCChhhHHHHHHHHHccCChhHHHHHH
Q 010215 182 GQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLEL-KSCIPPNAHTFNIFIHGWCKINRVDEAQWTI 260 (515)
Q Consensus 182 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 260 (515)
|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..+ +.++.||..+||.|+.+|++.|++++|.++|
T Consensus 267 g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf 346 (857)
T PLN03077 267 GECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVF 346 (857)
T ss_pred CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999995 5689999999999999999999999999999
Q ss_pred HHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010215 261 QEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKP 340 (515)
Q Consensus 261 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 340 (515)
++|.. ||..+|+++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|
T Consensus 347 ~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~ 422 (857)
T PLN03077 347 SRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS 422 (857)
T ss_pred hhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc
Confidence 99974 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHH
Q 010215 341 DSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPL 420 (515)
Q Consensus 341 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 420 (515)
+..++++||++|+++|++++|.++|+ .|.+ +|..+|+.+|.+|++.|+.++|+++|++|.. + ++||..||+.+
T Consensus 423 ~~~~~n~Li~~y~k~g~~~~A~~vf~-~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~-~~pd~~t~~~l 495 (857)
T PLN03077 423 YVVVANALIEMYSKCKCIDKALEVFH-NIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-T-LKPNSVTLIAA 495 (857)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHH-hCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-C-CCCCHhHHHHH
Confidence 99999999999999999999999999 8875 6889999999999999999999999999975 4 78888877777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHcCCC------------------------------CCCHHHHHHHHHHHHhcCCHHHH
Q 010215 421 LKSCFKTGKTDECLSQLLDDMVNKHHL------------------------------SLDITTYTLVIHGLCRANKCEWA 470 (515)
Q Consensus 421 l~~~~~~g~~~~A~~~~~~~~~~~~~~------------------------------~p~~~~~~~li~~~~~~g~~~~A 470 (515)
+.+|++.|..+.+. +++..+.+ .|+ .||..+|++||.+|++.|+.++|
T Consensus 496 L~a~~~~g~l~~~~-~i~~~~~~-~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A 573 (857)
T PLN03077 496 LSACARIGALMCGK-EIHAHVLR-TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMA 573 (857)
T ss_pred HHHHhhhchHHHhH-HHHHHHHH-hCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHH
Confidence 76665555554444 44443333 221 45666777777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010215 471 YLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMK 513 (515)
Q Consensus 471 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 513 (515)
.++|++|.+.|+.||..||..++.+|.+.|++++|.++|+.|.
T Consensus 574 ~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 574 VELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777775
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.6e-65 Score=529.48 Aligned_cols=470 Identities=19% Similarity=0.288 Sum_probs=426.5
Q ss_pred cccccccccccccCCCcc-cccccccCCCCChhhHHHHH-----HHhcCCCCHHHHHHHhhccccCCCCcCCHHHHHHHH
Q 010215 34 HIVSSSPIESYCSDGARL-DHHQVLCVDSPRLPDIDVII-----SKVHVGSSEDEVFQSLKQDHVCNAIQPSHYLVNKLI 107 (515)
Q Consensus 34 ~~~~~~l~~~y~~~~~~~-~~~~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~ll 107 (515)
......+++.|+++|... +..+|+.|+.++++.|+.++ ..+...+..++.++.+.. | ..||..+|+.+|
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~-M----~~pd~~Tyn~LL 444 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKL-I----RNPTLSTFNMLM 444 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHH-c----CCCCHHHHHHHH
Confidence 344555667778888754 78889999888887776654 334444444443333322 2 129999999999
Q ss_pred HHhh--hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCH
Q 010215 108 HRFK--DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHI-VTLNTIAKVMRRFSGAGQW 184 (515)
Q Consensus 108 ~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~ 184 (515)
.+|+ ++++.|.++|+.|. ..|+.||..+|+.||++|+++|++++|.++|++|.+.+. ++..+++.+|.+|++.|++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~-~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQ-EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 9998 48999999999994 679999999999999999999999999999999998775 6899999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh---cCCCCChhhHHHHHHHHHccCChhHHHHHHH
Q 010215 185 EDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELK---SCIPPNAHTFNIFIHGWCKINRVDEAQWTIQ 261 (515)
Q Consensus 185 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 261 (515)
++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .++.||..+|+++|.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999985 3689999999999999999999999999999
Q ss_pred HHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 010215 262 EMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPD 341 (515)
Q Consensus 262 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 341 (515)
+|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHH
Q 010215 342 SRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLL 421 (515)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll 421 (515)
..+|++||.+|++.|++++|.++|+ .|...|+.||..+||.||.+|++.|++++|+++|++|.+.| +.||..||+.++
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~-eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G-i~Pd~~Ty~sLL 761 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYE-DIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG-LCPNTITYSILL 761 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHH
Confidence 9999999999999999999999999 99999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHH
Q 010215 422 KSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCR----A-------------------NKCEWAYLLFKEMI 478 (515)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~-------------------g~~~~A~~~~~~m~ 478 (515)
.+|++.|++++|. +++.+|.+ .|+.||..+|++++..|.+ + +..++|..+|++|.
T Consensus 762 ~a~~k~G~le~A~-~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~ 839 (1060)
T PLN03218 762 VASERKDDADVGL-DLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETI 839 (1060)
T ss_pred HHHHHCCCHHHHH-HHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHH
Confidence 9999999999999 99999988 8999999999999876432 1 23468999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010215 479 GHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMK 513 (515)
Q Consensus 479 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 513 (515)
+.|+.||..||..++.++...+..+.+.++++.|.
T Consensus 840 ~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~ 874 (1060)
T PLN03218 840 SAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG 874 (1060)
T ss_pred HCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc
Confidence 99999999999999977788888999888888764
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.2e-63 Score=515.21 Aligned_cols=472 Identities=15% Similarity=0.231 Sum_probs=432.0
Q ss_pred ccccccccccccccCCCcc-cccccccCCCCChhhHHHHHHHhcCCCCHHH---HHHHhhccccCCCCcCCHHHHHHHHH
Q 010215 33 SHIVSSSPIESYCSDGARL-DHHQVLCVDSPRLPDIDVIISKVHVGSSEDE---VFQSLKQDHVCNAIQPSHYLVNKLIH 108 (515)
Q Consensus 33 ~~~~~~~l~~~y~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~g~~p~~~~~~~ll~ 108 (515)
+.+..+.++..|++.|... +...|..|+.||+.+||.++..+......+. +|+.|.+. |+.||..+|+.+|.
T Consensus 405 ~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~----Gl~pD~~tynsLI~ 480 (1060)
T PLN03218 405 DKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEA----GLKADCKLYTTLIS 480 (1060)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc----CCCCCHHHHHHHHH
Confidence 4455666788888888754 7777888999999999999965444334333 67777664 99999999999999
Q ss_pred Hhh--hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHH
Q 010215 109 RFK--DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHI-VTLNTIAKVMRRFSGAGQWE 185 (515)
Q Consensus 109 ~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~ 185 (515)
+|+ ++.+.|.++|+.|. ..|+.||..+|+.+|++|++.|++++|.++|++|...+. ++..+|+.++.+|++.|+++
T Consensus 481 ~y~k~G~vd~A~~vf~eM~-~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~d 559 (1060)
T PLN03218 481 TCAKSGKVDAMFEVFHEMV-NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVD 559 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 997 58999999999995 578999999999999999999999999999999988765 78999999999999999999
Q ss_pred HHHHHHHHHhh--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh-cCCCCChhhHHHHHHHHHccCChhHHHHHHHH
Q 010215 186 DAVRTFDELGT--FGLEKNTETMNLLLDTLCKEGKVELARSVFLELK-SCIPPNAHTFNIFIHGWCKINRVDEAQWTIQE 262 (515)
Q Consensus 186 ~A~~~~~~m~~--~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 262 (515)
+|.++|++|.. .|+.||..+|++++.+|++.|++++|.++|+.|. .+++|+..+|+.+|.+|++.|++++|.++|++
T Consensus 560 eA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~e 639 (1060)
T PLN03218 560 RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDD 639 (1060)
T ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999976 6789999999999999999999999999999965 57899999999999999999999999999999
Q ss_pred HHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 010215 263 MKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDS 342 (515)
Q Consensus 263 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 342 (515)
|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 640 M~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdv 719 (1060)
T PLN03218 640 MKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTV 719 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHH
Q 010215 343 RFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLK 422 (515)
Q Consensus 343 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~ 422 (515)
.+|+.||.+|++.|++++|.++|+ .|...|+.||..+|+.++.+|++.|++++|.++|.+|.+.| +.||..+|+.++.
T Consensus 720 vtyN~LI~gy~k~G~~eeAlelf~-eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G-i~pd~~tynsLIg 797 (1060)
T PLN03218 720 STMNALITALCEGNQLPKALEVLS-EMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG-IKPNLVMCRCITG 797 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHH
Confidence 999999999999999999999999 99999999999999999999999999999999999999999 9999999999987
Q ss_pred HHHh----c-------------------CChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 423 SCFK----T-------------------GKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 423 ~~~~----~-------------------g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 479 (515)
.|.+ . +..++|+ .+|++|.+ .|+.||..+|+.++.++++.+..+.+.+++++|..
T Consensus 798 lc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al-~lf~eM~~-~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~ 875 (1060)
T PLN03218 798 LCLRRFEKACALGEPVVSFDSGRPQIENKWTSWAL-MVYRETIS-AGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGI 875 (1060)
T ss_pred HHHHHHHHHhhhhhhhhhhhccccccccchHHHHH-HHHHHHHH-CCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhcc
Confidence 6542 1 1236788 99999999 89999999999999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010215 480 HDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMKKL 515 (515)
Q Consensus 480 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~l 515 (515)
.+..|+..+|++++.++.+. .++|..++++|.++
T Consensus 876 ~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~ 909 (1060)
T PLN03218 876 SADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASL 909 (1060)
T ss_pred CCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHc
Confidence 88899999999999998433 36899999999763
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-63 Score=514.92 Aligned_cols=433 Identities=16% Similarity=0.270 Sum_probs=403.3
Q ss_pred CCChhhHHHHHHHh-cCCCCHHH--HHHHhhccccCCCCcCCHHHHHHHHHHhh--hCHHHHHHHHHHhccCCCCCCCHH
Q 010215 61 SPRLPDIDVIISKV-HVGSSEDE--VFQSLKQDHVCNAIQPSHYLVNKLIHRFK--DDWKSALGIFRWAGSCPGYEHSSE 135 (515)
Q Consensus 61 ~~~~~~~~~~i~~~-~~~~~~~~--~~~~~~~~~~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~~~~~~ 135 (515)
.++.++|+.+|..+ +.+...++ +|+.|... .+..||..||+.++.+|. ++.+.+.+++..+. ..|+.||..
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~---~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~-~~g~~~~~~ 159 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAG---CPFTLPASTYDALVEACIALKSIRCVKAVYWHVE-SSGFEPDQY 159 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HhCCCcchH
Confidence 45677999999654 44544443 67777643 357899999999999997 48888999999994 579999999
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 010215 136 IYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCK 215 (515)
Q Consensus 136 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 215 (515)
+|+.++++|+++|++++|.++|++|.+++..+|+++ +.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++
T Consensus 160 ~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~l---i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~ 236 (697)
T PLN03081 160 MMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTI---IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236 (697)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHH---HHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhc
Confidence 999999999999999999999999998877777776 99999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHH-hhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHH
Q 010215 216 EGKVELARSVFLE-LKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYEL 294 (515)
Q Consensus 216 ~~~~~~a~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 294 (515)
.|..+.+.+++.. .+.+..+|..+|++|+++|+++|++++|.++|++|.. +|..+||++|.+|++.|++++|+++
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~l 312 (697)
T PLN03081 237 LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCL 312 (697)
T ss_pred CCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999998 5578999999999999999999999999999999974 6899999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCC
Q 010215 295 LDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGV 374 (515)
Q Consensus 295 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 374 (515)
|++|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|++|+++|+++|++++|.++|+ .|.+
T Consensus 313 f~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~-~m~~--- 388 (697)
T PLN03081 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD-RMPR--- 388 (697)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHH-hCCC---
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 8864
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHH
Q 010215 375 APDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTY 454 (515)
Q Consensus 375 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~ 454 (515)
||..+||+||.+|+++|+.++|+++|++|.+.| +.||..||+.++.+|++.|++++|. ++|+.|.+++|+.|+..+|
T Consensus 389 -~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g-~~Pd~~T~~~ll~a~~~~g~~~~a~-~~f~~m~~~~g~~p~~~~y 465 (697)
T PLN03081 389 -KNLISWNALIAGYGNHGRGTKAVEMFERMIAEG-VAPNHVTFLAVLSACRYSGLSEQGW-EIFQSMSENHRIKPRAMHY 465 (697)
T ss_pred -CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHhcCCcHHHHH-HHHHHHHHhcCCCCCccch
Confidence 799999999999999999999999999999999 9999999999999999999999999 9999999888999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 455 TLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMKK 514 (515)
Q Consensus 455 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 514 (515)
++++++|++.|++++|.+++++| +..|+..+|++|+.+|...|+++.|.++++.+.+
T Consensus 466 ~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~ 522 (697)
T PLN03081 466 ACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG 522 (697)
T ss_pred HhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 99999999999999999999987 6899999999999999999999999988887754
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.6e-59 Score=483.93 Aligned_cols=457 Identities=18% Similarity=0.254 Sum_probs=418.3
Q ss_pred cccccccccccccCCCcc-cccccccC-----CCCChhhHHHHHHHhcCCCCH---HHHHHHhhccccCCCCcCCHHHHH
Q 010215 34 HIVSSSPIESYCSDGARL-DHHQVLCV-----DSPRLPDIDVIISKVHVGSSE---DEVFQSLKQDHVCNAIQPSHYLVN 104 (515)
Q Consensus 34 ~~~~~~l~~~y~~~~~~~-~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~g~~p~~~~~~ 104 (515)
.+..+++|..|++.|... +...|..| ..||..+|++++..+...... .+++..|... |+.||..+++
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~----g~~~~~~~~n 162 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESS----GFEPDQYMMN 162 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh----CCCcchHHHH
Confidence 346778889999999754 66666544 257899999999654333333 4467777664 9999999999
Q ss_pred HHHHHhh--hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhc
Q 010215 105 KLIHRFK--DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHI-VTLNTIAKVMRRFSGA 181 (515)
Q Consensus 105 ~ll~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~li~~~~~~ 181 (515)
.++..+. ++.+.|.++|+.|. .||..+|+.++.+|++.|++++|.++|++|.+.+. ++..++..++.++++.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC
Confidence 9999987 58999999999995 37999999999999999999999999999987665 7888999999999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHH
Q 010215 182 GQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQ 261 (515)
Q Consensus 182 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 261 (515)
|..+.+.+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|.. +|..+||.+|.+|++.|++++|.++|+
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE---KTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC---CChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999864 799999999999999999999999999
Q ss_pred HHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 010215 262 EMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPD 341 (515)
Q Consensus 262 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 341 (515)
+|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++++++|++.|++++|.++|++|. .||
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d 390 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKN 390 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 578
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHH
Q 010215 342 SRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLL 421 (515)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll 421 (515)
..+||+||.+|++.|+.++|.++|+ +|.+.|+.||..||+.++.+|++.|..++|.++|+.|.+..++.|+..+|+.++
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~-~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFE-RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHH-HHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 9999999999999999999999999 999999999999999999999999999999999999987433999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 010215 422 KSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPR-YQTCRLILDEVKQKH 500 (515)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g 500 (515)
.+|++.|++++|. +++++| ++.|+..+|++|+.+|...|+++.|.++++++.+ +.|+ ..+|..+++.|.+.|
T Consensus 470 ~~l~r~G~~~eA~-~~~~~~----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G 542 (697)
T PLN03081 470 ELLGREGLLDEAY-AMIRRA----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSG 542 (697)
T ss_pred HHHHhcCCHHHHH-HHHHHC----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCC
Confidence 9999999999999 887655 6789999999999999999999999999999974 5664 679999999999999
Q ss_pred CHHHHHHHHHHHHh
Q 010215 501 MYDAAEKIEAVMKK 514 (515)
Q Consensus 501 ~~~~a~~~~~~m~~ 514 (515)
++++|.++++.|++
T Consensus 543 ~~~~A~~v~~~m~~ 556 (697)
T PLN03081 543 RQAEAAKVVETLKR 556 (697)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999985
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=1.4e-25 Score=242.01 Aligned_cols=387 Identities=12% Similarity=0.076 Sum_probs=287.9
Q ss_pred hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010215 112 DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTF 191 (515)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 191 (515)
++++.|...++.+... .+.+..++..+...+.+.|+.++|..+|+++...++.+...+..++..|.+.|++++|++++
T Consensus 513 g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 590 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTI--DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAIL 590 (899)
T ss_pred CCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 4566666666666421 23456666677777777777777777777776666666666666677777777777777777
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCcc
Q 010215 192 DELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPC 271 (515)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 271 (515)
+.+.+.. +.+...|..+..++...|++++|...|+.+....+.+...+..+..++.+.|++++|...|+++.+.. +.+
T Consensus 591 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 668 (899)
T TIGR02917 591 NEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDN 668 (899)
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCC
Confidence 7776543 45666777777777777777777777777555555666777777777777777777777777776653 335
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 010215 272 VISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYT 351 (515)
Q Consensus 272 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 351 (515)
..+|..++..+...|++++|.++++.+.+.+ +.+...+..+...+...|++++|.+.++.+.+.+ |+..++..+...
T Consensus 669 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 745 (899)
T TIGR02917 669 TEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRA 745 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHH
Confidence 6677777777777788888888877777664 3456677777778888888888888888887753 444666777888
Q ss_pred HHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChH
Q 010215 352 LGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTD 431 (515)
Q Consensus 352 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~ 431 (515)
+.+.|++++|...++ .+.+.. +.+...++.+...|...|++++|.++|+++.+.. +++...+..+...+...|+ .
T Consensus 746 ~~~~g~~~~A~~~~~-~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~-~ 820 (899)
T TIGR02917 746 LLASGNTAEAVKTLE-AWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA--PDNAVVLNNLAWLYLELKD-P 820 (899)
T ss_pred HHHCCCHHHHHHHHH-HHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCc-H
Confidence 888888888888887 554432 3467788888888888899999999998888865 5667788888888888888 7
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010215 432 ECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAV 511 (515)
Q Consensus 432 ~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 511 (515)
+|+ .+++++.+.. +-+...+..+...+...|++++|.+.++++.+.+ +.+..++..+..++.+.|++++|++++++
T Consensus 821 ~A~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 896 (899)
T TIGR02917 821 RAL-EYAEKALKLA--PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARKELDK 896 (899)
T ss_pred HHH-HHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 788 8888887732 2245667788889999999999999999999855 33888999999999999999999999998
Q ss_pred HHh
Q 010215 512 MKK 514 (515)
Q Consensus 512 m~~ 514 (515)
|.+
T Consensus 897 ~~~ 899 (899)
T TIGR02917 897 LLN 899 (899)
T ss_pred HhC
Confidence 863
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=8.6e-25 Score=235.92 Aligned_cols=366 Identities=12% Similarity=0.072 Sum_probs=192.9
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 010215 135 EIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLC 214 (515)
Q Consensus 135 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 214 (515)
..+..+...+.+.|++++|.+.|+++...++.+..++..+...+.+.|++++|..+|+++.+.+ +.+...+..+...+.
T Consensus 500 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 578 (899)
T TIGR02917 500 PAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYL 578 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444444444444444332 223334444444455
Q ss_pred HcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHH
Q 010215 215 KEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYEL 294 (515)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 294 (515)
..|++++|..+++.+....+.+...|..+..+|.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.+.
T Consensus 579 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 657 (899)
T TIGR02917 579 GKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITS 657 (899)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555444444445555555555555555555555555554432 22344455555555555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCC
Q 010215 295 LDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGV 374 (515)
Q Consensus 295 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 374 (515)
++++.+.. +.+..++..+...+...|++++|.++++.+.+.. +.+...+..+...+.+.|++++|...|+ .+...
T Consensus 658 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~-~~~~~-- 732 (899)
T TIGR02917 658 LKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYR-KALKR-- 732 (899)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHH-HHHhh--
Confidence 55554432 2234455555555555555555555555555443 3444555555555566666666666665 43332
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHH
Q 010215 375 APDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTY 454 (515)
Q Consensus 375 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~ 454 (515)
.|+..++..++.++.+.|++++|.+.++++.+.. +.+...+..+...|...|+.++|. ..++++.+.. +.+...+
T Consensus 733 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~-~~~~~~~~~~--p~~~~~~ 807 (899)
T TIGR02917 733 APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH--PNDAVLRTALAELYLAQKDYDKAI-KHYRTVVKKA--PDNAVVL 807 (899)
T ss_pred CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHH-HHHHHHHHhC--CCCHHHH
Confidence 2333455555666666666666666666665543 444555666666666666666666 6666666521 2345566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 455 TLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMKK 514 (515)
Q Consensus 455 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 514 (515)
..+...+...|+ ++|++.++++.+.. +-+..++..+...+...|++++|.++++.+.+
T Consensus 808 ~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 865 (899)
T TIGR02917 808 NNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVN 865 (899)
T ss_pred HHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666666666666 66666666666421 22334555556666777777777777777654
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=1.9e-21 Score=188.57 Aligned_cols=305 Identities=13% Similarity=0.099 Sum_probs=155.6
Q ss_pred HHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHHcCC
Q 010215 142 DILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKN---TETMNLLLDTLCKEGK 218 (515)
Q Consensus 142 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~~~ 218 (515)
..+...|++++|...|+++.+.++.++.++..+...+...|++++|..+++.+.+.+..++ ...+..+...|...|+
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3445566777777777777766666666666666677777777777777766665421111 1344555555556666
Q ss_pred HHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 010215 219 VELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEM 298 (515)
Q Consensus 219 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 298 (515)
+++|..+|+++....+.+..+++.++..+.+.|++++|.+.++.+.+.+..++...
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------------ 178 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE------------------------ 178 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH------------------------
Confidence 66666666554443344455555555555555555555555555554321111000
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCH
Q 010215 299 QAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDT 378 (515)
Q Consensus 299 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 378 (515)
....+..+...+.+.|++++|.+.++++.+.. +.+...+..+...|.+.|++++|...|+ .+...+.....
T Consensus 179 -------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~p~~~~ 249 (389)
T PRK11788 179 -------IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALE-RVEEQDPEYLS 249 (389)
T ss_pred -------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHH-HHHHHChhhHH
Confidence 00122233334444445555555544444432 2223344444455555555555555555 33332111112
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 010215 379 STFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVI 458 (515)
Q Consensus 379 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li 458 (515)
.+++.++.+|...|++++|...++++.+. .|+...+..+...+.+.|++++|. .+++++.+. .|+...+..++
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~-~~l~~~l~~---~P~~~~~~~l~ 322 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQ-ALLREQLRR---HPSLRGFHRLL 322 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHH-HHHHHHHHh---CcCHHHHHHHH
Confidence 34455555555555555555555555552 244444455555555555555555 555555441 35555555555
Q ss_pred HHHHh---cCCHHHHHHHHHHHHhCCCCCCH
Q 010215 459 HGLCR---ANKCEWAYLLFKEMIGHDITPRY 486 (515)
Q Consensus 459 ~~~~~---~g~~~~A~~~~~~m~~~~~~p~~ 486 (515)
..+.. .|+.+++..++++|.+.++.|++
T Consensus 323 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 323 DYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 44443 33555555555555554444443
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=2e-21 Score=188.50 Aligned_cols=322 Identities=15% Similarity=0.142 Sum_probs=255.3
Q ss_pred CCcCCHHHHHHHHHHhhhCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCC----HHH
Q 010215 95 AIQPSHYLVNKLIHRFKDDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVT----LNT 170 (515)
Q Consensus 95 g~~p~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~ 170 (515)
+.......+..+.....++.+.|...|..+... .+.+..++..+...|...|++++|..+++.+....... ...
T Consensus 32 ~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 109 (389)
T PRK11788 32 SNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLA 109 (389)
T ss_pred hhhccHHHHHHHHHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 344556666666666668899999999999743 24467789999999999999999999999987754322 345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC-----hhhHHHHHH
Q 010215 171 IAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPN-----AHTFNIFIH 245 (515)
Q Consensus 171 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~li~ 245 (515)
+..++..|.+.|++++|+++|+++.+.. +++..++..++..+...|++++|.+.++.+....+.+ ...+..+..
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 6778999999999999999999998753 4578899999999999999999999999965433322 224567788
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 010215 246 GWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEE 325 (515)
Q Consensus 246 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 325 (515)
.+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++...+......++..++.+|.+.|++++
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 267 (389)
T PRK11788 189 QALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE 267 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence 8889999999999999998764 334667888889999999999999999998876433234667888899999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHh---CCCHHHHHHHHH
Q 010215 326 AIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSH---HGHHEKAFHVLE 402 (515)
Q Consensus 326 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~ 402 (515)
|.+.++.+.+. .|+...+..++..+.+.|++++|..+++ .+.+. .|+...++.++..+.. .|+.++++.+++
T Consensus 268 A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~-~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~ 342 (389)
T PRK11788 268 GLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLR-EQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLR 342 (389)
T ss_pred HHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHH-HHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHH
Confidence 99999998876 4565666888889999999999999998 55443 5888888888877664 558889999999
Q ss_pred HHHhCCCCCCCHHhHHHHHHHHHhcCChHH
Q 010215 403 EMNKLEHCKPNVQTFHPLLKSCFKTGKTDE 432 (515)
Q Consensus 403 ~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 432 (515)
+|.+.+ +.|++. ..|.++|-..+
T Consensus 343 ~~~~~~-~~~~p~------~~c~~cg~~~~ 365 (389)
T PRK11788 343 DLVGEQ-LKRKPR------YRCRNCGFTAR 365 (389)
T ss_pred HHHHHH-HhCCCC------EECCCCCCCCc
Confidence 998877 677765 34777776654
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=4e-20 Score=171.83 Aligned_cols=329 Identities=16% Similarity=0.191 Sum_probs=176.8
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH-HHHHH
Q 010215 133 SSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETM-NLLLD 211 (515)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~ll~ 211 (515)
-..+|+.+.+.+-..|++++|+.+++.+.+..+...+++..+..++...|+.+.|.+.|.+..+. .|+.... +.+..
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgn 192 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhH
Confidence 45677888888888888888888888888877777788888888888888888888877777663 4443322 22333
Q ss_pred HHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCcc-HhHHHHHHHHHHhcCChhH
Q 010215 212 TLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPC-VISYSTIIQSYCRQYNFSK 290 (515)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~ 290 (515)
.+...|++++|...|.+..+..+.-..+|..|...+-..|+...|+..|++..+.. |+ ...|-.|...|...+.+++
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchH
Confidence 44445666666655555333333334455555555555555555555555555432 22 2344444444444444444
Q ss_pred H----------------------------------HHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 291 V----------------------------------YELLDEMQAQGCPPN-VVTYTTVMSYLAKSGDFEEAIRITEKMKI 335 (515)
Q Consensus 291 A----------------------------------~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 335 (515)
| +..|++..+. .|+ ..+|+.+..++-..|+..+|.+.+.+...
T Consensus 271 Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 271 AVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 4 4444444433 222 34455555555555555555555555544
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC-
Q 010215 336 VGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPD-TSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPN- 413 (515)
Q Consensus 336 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~- 413 (515)
.. +.-....+.|...|...|.+++|..+|. ...+ +.|. ....+.|...|-+.|++++|+..+++..+ +.|+
T Consensus 349 l~-p~hadam~NLgni~~E~~~~e~A~~ly~-~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~f 421 (966)
T KOG4626|consen 349 LC-PNHADAMNNLGNIYREQGKIEEATRLYL-KALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTF 421 (966)
T ss_pred hC-CccHHHHHHHHHHHHHhccchHHHHHHH-HHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchH
Confidence 32 2233444445555555555555555554 2221 1222 23445555555555555555555555554 3444
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010215 414 VQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD-ITTYTLVIHGLCRANKCEWAYLLFKEMI 478 (515)
Q Consensus 414 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 478 (515)
...|+.+...|-..|+.+.|+ +.+.+.+. +.|. ....+.|...|..+|+..+|+.-+++.+
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~-q~y~rAI~---~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAI-QCYTRAIQ---INPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHH-HHHHHHHh---cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 234555555555555555555 44444443 2333 3344455555555555555555555554
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=5e-19 Score=180.10 Aligned_cols=326 Identities=12% Similarity=0.047 Sum_probs=153.7
Q ss_pred HHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 010215 142 DILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVEL 221 (515)
Q Consensus 142 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 221 (515)
..+.+.|++++|..+++.+....+.+..++..++.+....|++++|++.|+++.+.. +.+...+..+...+...|++++
T Consensus 50 ~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~ 128 (656)
T PRK15174 50 IACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYAT 128 (656)
T ss_pred HHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHH
Confidence 334445555555555555555555555555555555555555555555555555432 2234444445555555555555
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 010215 222 ARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQ 301 (515)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 301 (515)
|...+++.....|.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|+..++.+.+.
T Consensus 129 Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~ 206 (656)
T PRK15174 129 VADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPF 206 (656)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhc
Confidence 5555555433334445555555555555555555555555444332 1112222222 2244455555555555554443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHhhchhCCCCCC
Q 010215 302 GCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQE----AVYVYQVEMPENGVAPD 377 (515)
Q Consensus 302 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~~~~~~ 377 (515)
...++......+..++...|++++|.+.++++.+.. +.+...+..+...|...|++++ |...|+ ...... +.+
T Consensus 207 ~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~-~Al~l~-P~~ 283 (656)
T PRK15174 207 FALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWR-HALQFN-SDN 283 (656)
T ss_pred CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH-HHHhhC-CCC
Confidence 222222333333444455555555555555555443 3334444555555555555543 455554 332221 113
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCH-HHHHH
Q 010215 378 TSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDI-TTYTL 456 (515)
Q Consensus 378 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~-~~~~~ 456 (515)
...+..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|+ ..++.+... .|+. ..+..
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a~~~La~~l~~~G~~~eA~-~~l~~al~~---~P~~~~~~~~ 357 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLATH--PDLPYVRAMYARALRQVGQYTAAS-DEFVQLARE---KGVTSKWNRY 357 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHh---CccchHHHHH
Confidence 3445555555555555555555555555432 222333444445555555555555 555555442 2222 12222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 010215 457 VIHGLCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 457 li~~~~~~g~~~~A~~~~~~m~~ 479 (515)
+..++...|+.++|...|++..+
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 33445555555555555555543
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=4.8e-18 Score=173.56 Aligned_cols=390 Identities=11% Similarity=0.022 Sum_probs=268.7
Q ss_pred hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010215 112 DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTF 191 (515)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 191 (515)
++++.|+..|..+.. ..|++..|..+...|.+.|++++|++.++...+.++....++..+..+|...|++++|+.-|
T Consensus 141 ~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~ 217 (615)
T TIGR00990 141 KDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDL 217 (615)
T ss_pred CCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 588999999998863 34678889999999999999999999999999988888899999999999999999999888
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC----------------------------CCCC-hhhHHH
Q 010215 192 DELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSC----------------------------IPPN-AHTFNI 242 (515)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----------------------------~~~~-~~~~~~ 242 (515)
......+-..+.. ...++..+........+...++.-... ..+. ...+..
T Consensus 218 ~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (615)
T TIGR00990 218 TASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQ 296 (615)
T ss_pred HHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHH
Confidence 7665432111111 111111111100011111111110000 0000 000111
Q ss_pred HHHHH---HccCChhHHHHHHHHHHhCC-C-CccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010215 243 FIHGW---CKINRVDEAQWTIQEMKGHG-C-HPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYL 317 (515)
Q Consensus 243 li~~~---~~~g~~~~A~~~~~~~~~~~-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 317 (515)
+...+ ...+++++|.+.|++..+.+ . +.....|+.+...+...|++++|+..+++..... +-+..+|..+...+
T Consensus 297 l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~ 375 (615)
T TIGR00990 297 LGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMN 375 (615)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHH
Confidence 11110 12367888999999888754 1 2345667888888888999999999999888752 22356788888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 010215 318 AKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKA 397 (515)
Q Consensus 318 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 397 (515)
...|++++|...++++.+.. +.+..++..+...|...|++++|...|+ ...+.. +.+...+..+...+.+.|++++|
T Consensus 376 ~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~-kal~l~-P~~~~~~~~la~~~~~~g~~~eA 452 (615)
T TIGR00990 376 LELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQ-KSIDLD-PDFIFSHIQLGVTQYKEGSIASS 452 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHcC-ccCHHHHHHHHHHHHHCCCHHHH
Confidence 88999999999999888764 4567788888888999999999999998 554432 23466777788888899999999
Q ss_pred HHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCC-C---CH-HHHHHHHHHHHhcCCHHHHHH
Q 010215 398 FHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLS-L---DI-TTYTLVIHGLCRANKCEWAYL 472 (515)
Q Consensus 398 ~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-p---~~-~~~~~li~~~~~~g~~~~A~~ 472 (515)
+..|++..+.. +.+...+..+...+...|++++|+ ..+++......-. + +. ..++.....+...|++++|.+
T Consensus 453 ~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~-~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~ 529 (615)
T TIGR00990 453 MATFRRCKKNF--PEAPDVYNYYGELLLDQNKFDEAI-EKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAEN 529 (615)
T ss_pred HHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHH-HHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999988743 344677888888889999999998 8888877622110 0 11 112222223344689999999
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 473 LFKEMIGHDITPR-YQTCRLILDEVKQKHMYDAAEKIEAVMKK 514 (515)
Q Consensus 473 ~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 514 (515)
++++..+. .|+ ...+..+...+.+.|++++|++.++...+
T Consensus 530 ~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 530 LCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99988763 344 44677788888899999999998887654
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=8.6e-20 Score=169.63 Aligned_cols=352 Identities=15% Similarity=0.131 Sum_probs=264.4
Q ss_pred HHHHHHHHHHhh--hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHH--------
Q 010215 100 HYLVNKLIHRFK--DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLN-------- 169 (515)
Q Consensus 100 ~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------- 169 (515)
..+|+.+-..+. ++...|+..++.+.+.. +..+..|..+..+|...|+.+.|.+.|.+..+-++....
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHH
Confidence 445554444443 35666666666665221 224556666666666666666666666665554442222
Q ss_pred --------------------------HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHH
Q 010215 170 --------------------------TIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKN-TETMNLLLDTLCKEGKVELA 222 (515)
Q Consensus 170 --------------------------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a 222 (515)
++..|...+-..|+...|++.|++..+. .|+ ...|-.|...|...+.++.|
T Consensus 194 lka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHH
Confidence 2222344455677777777777777763 454 46777888888888888888
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCcc-HhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 010215 223 RSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPC-VISYSTIIQSYCRQYNFSKVYELLDEMQAQ 301 (515)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 301 (515)
...|.+....-|....++..+...|...|.++.|++.+++..+.. |+ ...|+.|..++-..|+..+|.+.|.+.+..
T Consensus 272 vs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 272 VSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 888888555456667888888888999999999999999988763 44 578999999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCC-HHH
Q 010215 302 GCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPD-TST 380 (515)
Q Consensus 302 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~ 380 (515)
. +....+.+.+...|...|.++.|..+|....+.. +--....+.|...|-+.|++++|...|+ +... ++|+ ...
T Consensus 350 ~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Yk-ealr--I~P~fAda 424 (966)
T KOG4626|consen 350 C-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYK-EALR--IKPTFADA 424 (966)
T ss_pred C-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHH-HHHh--cCchHHHH
Confidence 2 3356789999999999999999999999988753 3335678999999999999999999999 5443 4676 468
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC-HHHHHHHH
Q 010215 381 FNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPN-VQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD-ITTYTLVI 458 (515)
Q Consensus 381 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~-~~~~~~li 458 (515)
|+.+...|-..|+.+.|++.+.+.+. +.|. ...++.|...|-.+|++.+|+ +-++...+ ++|| +..|..++
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~---~nPt~AeAhsNLasi~kDsGni~~AI-~sY~~aLk---lkPDfpdA~cNll 497 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQ---INPTFAEAHSNLASIYKDSGNIPEAI-QSYRTALK---LKPDFPDAYCNLL 497 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHh---cCcHHHHHHhhHHHHhhccCCcHHHH-HHHHHHHc---cCCCCchhhhHHH
Confidence 99999999999999999999999998 4566 568899999999999999999 88888876 5666 45677777
Q ss_pred HHHHhcCCHHH
Q 010215 459 HGLCRANKCEW 469 (515)
Q Consensus 459 ~~~~~~g~~~~ 469 (515)
.++---.++.+
T Consensus 498 h~lq~vcdw~D 508 (966)
T KOG4626|consen 498 HCLQIVCDWTD 508 (966)
T ss_pred HHHHHHhcccc
Confidence 66654444444
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=6.7e-18 Score=183.66 Aligned_cols=384 Identities=13% Similarity=0.028 Sum_probs=263.9
Q ss_pred hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCH-----HH---------HHHHHHH
Q 010215 112 DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTL-----NT---------IAKVMRR 177 (515)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~---------~~~li~~ 177 (515)
++.+.|...|+.+... .+.+..++..+...|.+.|++++|+..|++..+.++.+. .. .......
T Consensus 283 g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~ 360 (1157)
T PRK11447 283 GQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA 360 (1157)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence 6888999999988643 245788999999999999999999999999887665322 11 1223456
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHH
Q 010215 178 FSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQ 257 (515)
Q Consensus 178 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 257 (515)
+.+.|++++|++.|+++.+.. +.+...+..+..++...|++++|++.|+++....+.+...+..+...|. .++.++|.
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~ 438 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKAL 438 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHH
Confidence 778999999999999998863 3467778888999999999999999999966656666767766666654 34556666
Q ss_pred HHHHHHHhCCCC--------ccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010215 258 WTIQEMKGHGCH--------PCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRI 329 (515)
Q Consensus 258 ~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 329 (515)
.+++.+...... .....+..+...+...|++++|++.|++..+.. +-+...+..+...|.+.|++++|...
T Consensus 439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666544321100 001223444555566666666666666666542 11344555566666666666666666
Q ss_pred HHHHHhcCCCCCHHHHHH--------------------------------------------HHHHHHhcCCHHHHHHHH
Q 010215 330 TEKMKIVGSKPDSRFFNC--------------------------------------------LIYTLGRASRVQEAVYVY 365 (515)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~--------------------------------------------li~~~~~~g~~~~A~~~~ 365 (515)
++++.+.. +.+...+.. +...+...|+.++|..++
T Consensus 518 l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 518 MRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 66665432 222222222 233444555666666555
Q ss_pred HhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcC
Q 010215 366 QVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKH 445 (515)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 445 (515)
+ . .+.+...+..+...+.+.|++++|++.|++..+.. +.+...+..+...+...|++++|. ..++...+.
T Consensus 597 ~-~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--P~~~~a~~~la~~~~~~g~~~eA~-~~l~~ll~~- 666 (1157)
T PRK11447 597 R-Q-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE--PGNADARLGLIEVDIAQGDLAAAR-AQLAKLPAT- 666 (1157)
T ss_pred H-h-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHhcc-
Confidence 4 2 12345566778888889999999999999998854 445778888889999999999998 888877652
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010215 446 HLSL-DITTYTLVIHGLCRANKCEWAYLLFKEMIGHDI--TP---RYQTCRLILDEVKQKHMYDAAEKIEAVMK 513 (515)
Q Consensus 446 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 513 (515)
.| +...+..+..++...|++++|.++++++....- .| +...+..+...+...|++++|++.++...
T Consensus 667 --~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 667 --ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred --CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33 455667788888899999999999999876321 12 22355556667788999999999988753
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=6.8e-18 Score=171.87 Aligned_cols=354 Identities=12% Similarity=0.043 Sum_probs=261.1
Q ss_pred hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010215 112 DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTF 191 (515)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 191 (515)
+++..|..++...... .+.+...+..++......|++++|...|+++...+|.+..++..+...+.+.|++++|+..|
T Consensus 56 g~~~~A~~l~~~~l~~--~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l 133 (656)
T PRK15174 56 DETDVGLTLLSDRVLT--AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLA 133 (656)
T ss_pred CCcchhHHHhHHHHHh--CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5677788877776532 23455666667777778999999999999999988888888888889999999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCcc
Q 010215 192 DELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPC 271 (515)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 271 (515)
+++.+.. +.+...+..+..++...|++++|...++.+....+.+...+..+. .+...|++++|...++.+.+....++
T Consensus 134 ~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~ 211 (656)
T PRK15174 134 EQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALER 211 (656)
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcc
Confidence 9988752 345777888888899999999999999886554455555554443 47788999999999998876643334
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhcCCCCCHHHHHH
Q 010215 272 VISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEE----AIRITEKMKIVGSKPDSRFFNC 347 (515)
Q Consensus 272 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~ 347 (515)
...+..+...+...|++++|++.++++.... +.+...+..+...+...|++++ |...++++.+.. +.+..++..
T Consensus 212 ~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~ 289 (656)
T PRK15174 212 QESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTL 289 (656)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 4455566778888999999999999988764 3356777888888899999885 788888888764 456778888
Q ss_pred HHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHH-hHHHHHHHHHh
Q 010215 348 LIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQ-TFHPLLKSCFK 426 (515)
Q Consensus 348 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~ 426 (515)
+...+.+.|++++|...++ ...... +.+...+..+..++.+.|++++|+..|+++.+.. |+.. .+..+..++..
T Consensus 290 lg~~l~~~g~~~eA~~~l~-~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~---P~~~~~~~~~a~al~~ 364 (656)
T PRK15174 290 YADALIRTGQNEKAIPLLQ-QSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK---GVTSKWNRYAAAALLQ 364 (656)
T ss_pred HHHHHHHCCCHHHHHHHHH-HHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHH
Confidence 8899999999999999998 554432 2245567778888899999999999999988743 5543 34445667888
Q ss_pred cCChHHHHHHHHHHHHHcCCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHH
Q 010215 427 TGKTDECLSQLLDDMVNKHHLSLDITTYT----LVIHGLCRANKCEWAYLLFKEMI 478 (515)
Q Consensus 427 ~g~~~~A~~~~~~~~~~~~~~~p~~~~~~----~li~~~~~~g~~~~A~~~~~~m~ 478 (515)
.|+.++|+ ..+++..+..+-.+ ...|. .+-.++...+..++...+..++.
T Consensus 365 ~G~~deA~-~~l~~al~~~P~~~-~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~ 418 (656)
T PRK15174 365 AGKTSEAE-SVFEHYIQARASHL-PQSFEEGLLALDGQISAVNLPPERLDWAWEVA 418 (656)
T ss_pred CCCHHHHH-HHHHHHHHhChhhc-hhhHHHHHHHHHHHHHhcCCccchhhHHHHHh
Confidence 99999998 88888877433221 22333 33334444455555445556654
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=1.3e-17 Score=173.57 Aligned_cols=396 Identities=9% Similarity=0.026 Sum_probs=281.0
Q ss_pred HHHHHhhhCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 010215 105 KLIHRFKDDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQW 184 (515)
Q Consensus 105 ~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 184 (515)
..|....++...|++++..+.. .-+.+...+..+...+.+.|++++|.++|++....++.+......++..+...|++
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~--~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRV--HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 3344455778888888887752 22456667888999999999999999999998888888888888888888999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 010215 185 EDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMK 264 (515)
Q Consensus 185 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 264 (515)
++|+..++++.+.. +.+.. +..+..++...|+.++|...++++....|.+...+..+...+...|..++|+..++...
T Consensus 100 ~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 100 DEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDAN 177 (765)
T ss_pred HHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence 99999999988762 44566 87888888899999999999999777777788888888888888888898988887665
Q ss_pred hCCCCccH------hHHHHHHHHHH-----hcCCh---hHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHhcCCHH
Q 010215 265 GHGCHPCV------ISYSTIIQSYC-----RQYNF---SKVYELLDEMQAQ-GCPPNVV-TY----TTVMSYLAKSGDFE 324 (515)
Q Consensus 265 ~~~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~~~~~-~~----~~li~~~~~~g~~~ 324 (515)
. .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+ ...+.++...|+++
T Consensus 178 ~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~ 254 (765)
T PRK10049 178 L---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYK 254 (765)
T ss_pred C---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 4 2221 11122222222 12234 6788888888754 2223221 11 11133455778899
Q ss_pred HHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCC---CHHHHHHHHHHHHhCCCHHHHHHH
Q 010215 325 EAIRITEKMKIVGSK-PDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAP---DTSTFNTMITMFSHHGHHEKAFHV 400 (515)
Q Consensus 325 ~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~ 400 (515)
+|+..|+.+.+.+.+ |+. ....+...|...|++++|...|+ .+....... .......+..++...|++++|.++
T Consensus 255 eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~-~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~ 332 (765)
T PRK10049 255 DVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILT-ELFYHPETIADLSDEELADLFYSLLESENYPGALTV 332 (765)
T ss_pred HHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHH-HHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 999999998876532 322 22225678888999999999998 554432111 134456666778889999999999
Q ss_pred HHHHHhCCC----------CCCCH---HhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCH
Q 010215 401 LEEMNKLEH----------CKPNV---QTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKC 467 (515)
Q Consensus 401 ~~~m~~~~~----------~~p~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 467 (515)
++++.+..+ ..|+. ..+..+...+...|+.++|+ .+++++.... +.+...+..+...+...|++
T Consensus 333 l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~-~~l~~al~~~--P~n~~l~~~lA~l~~~~g~~ 409 (765)
T PRK10049 333 TAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAE-MRARELAYNA--PGNQGLRIDYASVLQARGWP 409 (765)
T ss_pred HHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhC--CCCHHHHHHHHHHHHhcCCH
Confidence 998877420 11231 23455667788889999998 8888887732 33567788888889999999
Q ss_pred HHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 468 EWAYLLFKEMIGHDITPRY-QTCRLILDEVKQKHMYDAAEKIEAVMKK 514 (515)
Q Consensus 468 ~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 514 (515)
++|++.+++..+ +.|+. ..+......+...|++++|+++++.+.+
T Consensus 410 ~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 410 RAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999998886 45664 4444555566888999999999888764
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.85 E-value=1.1e-16 Score=174.25 Aligned_cols=385 Identities=12% Similarity=0.065 Sum_probs=220.3
Q ss_pred hCHHHHHHHHHHhccCCCCCCCHHHH----------------HHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHH-
Q 010215 112 DDWKSALGIFRWAGSCPGYEHSSEIY----------------EMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKV- 174 (515)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~~~~----------------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l- 174 (515)
++.++|.+.++...... +.++... ..+...+.+.|++++|.+.|+.+...++++...-...
T Consensus 76 g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~ 153 (1157)
T PRK11447 76 GDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYW 153 (1157)
T ss_pred CCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHH
Confidence 56677777777665322 2222221 2233456677777777777777766665544321111
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChh----------------
Q 010215 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAH---------------- 238 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------- 238 (515)
.......|+.++|++.|+++.+.. +.+...+..+...+...|+.++|++.++++....+.+..
T Consensus 154 ~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~ 232 (1157)
T PRK11447 154 RLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSD 232 (1157)
T ss_pred HHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCCh
Confidence 111223467777777777776653 335556666777777777777777777764322111110
Q ss_pred ----hHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010215 239 ----TFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVM 314 (515)
Q Consensus 239 ----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 314 (515)
.+...+..+-.....+.|...+.+.......|+.. .......+...|++++|+..|++..+.. +.+..++..+.
T Consensus 233 ~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg 310 (1157)
T PRK11447 233 ASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALG 310 (1157)
T ss_pred hhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 11111111112222334444444433321122221 1233556778899999999999988763 33678888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHH------------HHHHhcCCHHHHHHHHHhhchhCCCCCCHHHH
Q 010215 315 SYLAKSGDFEEAIRITEKMKIVGSKP-DSRFFNCLI------------YTLGRASRVQEAVYVYQVEMPENGVAPDTSTF 381 (515)
Q Consensus 315 ~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li------------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 381 (515)
..+.+.|++++|+..|++..+..... ....+..++ ..+.+.|++++|...|+ ...... +.+...+
T Consensus 311 ~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~-~Al~~~-P~~~~a~ 388 (1157)
T PRK11447 311 QAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQ-QARQVD-NTDSYAV 388 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHH-HHHHhC-CCCHHHH
Confidence 99999999999999999988754221 223344332 24567899999999998 555442 2356677
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHH-------------------------------------
Q 010215 382 NTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSC------------------------------------- 424 (515)
Q Consensus 382 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~------------------------------------- 424 (515)
..+...+...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 389 ~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~ 466 (1157)
T PRK11447 389 LGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQ 466 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHH
Confidence 788889999999999999999998853 23333443333332
Q ss_pred -----HhcCChHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 010215 425 -----FKTGKTDECLSQLLDDMVNKHHLSL-DITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITP-RYQTCRLILDEVK 497 (515)
Q Consensus 425 -----~~~g~~~~A~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~ 497 (515)
...|++++|+ ..+++..+. .| +...+..+...|.+.|++++|...++++.+ ..| +...+..+...+.
T Consensus 467 ~a~~~~~~g~~~eA~-~~~~~Al~~---~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~--~~P~~~~~~~a~al~l~ 540 (1157)
T PRK11447 467 QAEALENQGKWAQAA-ELQRQRLAL---DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQ--QKPNDPEQVYAYGLYLS 540 (1157)
T ss_pred HHHHHHHCCCHHHHH-HHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHH
Confidence 3345555555 555555542 22 233444555556666666666666666554 222 2222322222334
Q ss_pred hcCCHHHHHHHHHH
Q 010215 498 QKHMYDAAEKIEAV 511 (515)
Q Consensus 498 ~~g~~~~a~~~~~~ 511 (515)
..|++++|...++.
T Consensus 541 ~~~~~~~Al~~l~~ 554 (1157)
T PRK11447 541 GSDRDRAALAHLNT 554 (1157)
T ss_pred hCCCHHHHHHHHHh
Confidence 55666666655554
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.83 E-value=9.2e-16 Score=156.84 Aligned_cols=367 Identities=10% Similarity=-0.020 Sum_probs=259.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 010215 136 IYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCK 215 (515)
Q Consensus 136 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 215 (515)
.+....+.|.+.|++++|+..|++.....+ +...+..+..+|.+.|++++|++.++...+.. +.+...+..+..+|..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p-~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 355677889999999999999999887665 45678888999999999999999999998853 3467788889999999
Q ss_pred cCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC---------------------------CC
Q 010215 216 EGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH---------------------------GC 268 (515)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------------------~~ 268 (515)
.|++++|...|..+....+.+......++..+........+...++.-... ..
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 999999998886643221122111111111111100011111111100000 00
Q ss_pred Ccc-HhHHHHHHHH---HHhcCChhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 010215 269 HPC-VISYSTIIQS---YCRQYNFSKVYELLDEMQAQG-CPP-NVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDS 342 (515)
Q Consensus 269 ~~~-~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 342 (515)
.+. ...+..+... ....+++++|++.|+...+.+ ..| ....+..+...+...|++++|...+++..+.. +...
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcH
Confidence 000 0001111100 012367899999999998764 233 45677888888889999999999999998763 3446
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHH
Q 010215 343 RFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLK 422 (515)
Q Consensus 343 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~ 422 (515)
..|..+...+...|++++|...|+ ...+.. +.+...|..+...+...|++++|+..|++..+.. +.+...+..+..
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~-~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~~~~~~~~la~ 441 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFD-KALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PDFIFSHIQLGV 441 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHH-HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--ccCHHHHHHHHH
Confidence 688888999999999999999999 554432 2357789999999999999999999999999854 445677788888
Q ss_pred HHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HH-------HHHHHH
Q 010215 423 SCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRY-QT-------CRLILD 494 (515)
Q Consensus 423 ~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~-------~~~ll~ 494 (515)
.+.+.|++++|+ ..+++..+.. +.+...|+.+...+...|++++|.+.|++..+. .|+. .+ +...+.
T Consensus 442 ~~~~~g~~~eA~-~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 442 TQYKEGSIASSM-ATFRRCKKNF--PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALA 516 (615)
T ss_pred HHHHCCCHHHHH-HHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHH
Confidence 999999999999 9999988732 234678889999999999999999999998863 3321 11 111222
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 010215 495 EVKQKHMYDAAEKIEAVMKK 514 (515)
Q Consensus 495 ~~~~~g~~~~a~~~~~~m~~ 514 (515)
.+...|++++|+++++...+
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALI 536 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 23446999999999987654
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=3.5e-16 Score=162.81 Aligned_cols=414 Identities=12% Similarity=0.058 Sum_probs=298.7
Q ss_pred CChhhHHHHHHHhcCCCCHHHHHHHhhccccCCCCcCCHHHHHHHHHHh--hhCHHHHHHHHHHhccCCCCCCCHHHHHH
Q 010215 62 PRLPDIDVIISKVHVGSSEDEVFQSLKQDHVCNAIQPSHYLVNKLIHRF--KDDWKSALGIFRWAGSCPGYEHSSEIYEM 139 (515)
Q Consensus 62 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~ll~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 139 (515)
+-+..|..+....+....+.+++...... -..+...+..+-..+ .+++..|...++.+... .+.++..+..
T Consensus 16 ~~~~d~~~ia~~~g~~~~A~~~~~~~~~~-----~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~ 88 (765)
T PRK10049 16 NQIADWLQIALWAGQDAEVITVYNRYRVH-----MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRG 88 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 34567888877665555555566665431 123343344443333 36899999999997633 2456778889
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 010215 140 MVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKV 219 (515)
Q Consensus 140 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 219 (515)
++..+.+.|++++|...++++....+.+.. +..+...+...|+.++|+..++++.+.. +.+...+..+..++...+..
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCh
Confidence 999999999999999999999998888888 8888999999999999999999999863 33666667788888889999
Q ss_pred HHHHHHHHHhhcCCCCCh------hhHHHHHHHHH-----ccCCh---hHHHHHHHHHHhC-CCCccHh-HH----HHHH
Q 010215 220 ELARSVFLELKSCIPPNA------HTFNIFIHGWC-----KINRV---DEAQWTIQEMKGH-GCHPCVI-SY----STII 279 (515)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~~~~~-~~~~~~~-~~----~~li 279 (515)
+.|.+.++.+.. .|+. .....++..+. ..+++ ++|+..++.+.+. ...|+.. .+ ...+
T Consensus 167 e~Al~~l~~~~~--~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 167 APALGAIDDANL--TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred HHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 999999987553 2221 12222333332 22234 7788888888754 1123221 11 1113
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhc
Q 010215 280 QSYCRQYNFSKVYELLDEMQAQGCP-PNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKP---DSRFFNCLIYTLGRA 355 (515)
Q Consensus 280 ~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~ 355 (515)
.++...|++++|++.|+.+.+.+.. |+. ....+..+|...|++++|+..++++.+..... .......+..++...
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 4556779999999999999987532 332 22335778999999999999999987653111 134566677788999
Q ss_pred CCHHHHHHHHHhhchhCCC-----------CCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHH
Q 010215 356 SRVQEAVYVYQVEMPENGV-----------APD---TSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLL 421 (515)
Q Consensus 356 g~~~~A~~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll 421 (515)
|++++|..+++ .+..... .|+ ...+..+...+...|+.++|+++++++.... +.+...+..+.
T Consensus 324 g~~~eA~~~l~-~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~--P~n~~l~~~lA 400 (765)
T PRK10049 324 ENYPGALTVTA-HTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA--PGNQGLRIDYA 400 (765)
T ss_pred ccHHHHHHHHH-HHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 99999999998 6654321 123 2345667778889999999999999998864 55577888888
Q ss_pred HHHHhcCChHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010215 422 KSCFKTGKTDECLSQLLDDMVNKHHLSLD-ITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEV 496 (515)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 496 (515)
..+...|++++|+ +.+++..+ ..|+ ...+...+..+.+.|++++|..+++++++ ..|+......+-...
T Consensus 401 ~l~~~~g~~~~A~-~~l~~al~---l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 401 SVLQARGWPRAAE-NELKKAEV---LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARAR 470 (765)
T ss_pred HHHHhcCCHHHHH-HHHHHHHh---hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 9999999999999 99999887 3454 56677777789999999999999999996 567766555554444
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=2.2e-14 Score=146.78 Aligned_cols=432 Identities=11% Similarity=0.035 Sum_probs=308.5
Q ss_pred hhHHHHHHHhcCCCCHHH--HHHHhhccccCCCCcCCHH-HHHHHHHHh--hhCHHHHHHHHHHhccCCCCCCCHHHHHH
Q 010215 65 PDIDVIISKVHVGSSEDE--VFQSLKQDHVCNAIQPSHY-LVNKLIHRF--KDDWKSALGIFRWAGSCPGYEHSSEIYEM 139 (515)
Q Consensus 65 ~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~g~~p~~~-~~~~ll~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 139 (515)
..+...|...+.|+...+ .|+... ...|+.. ....++..+ .++..+|+..++.+. ...+........
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL------~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~lla 107 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEES------KAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLAS 107 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH------hhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHH
Confidence 447777777777776644 344443 2345531 111333332 367888999999885 222334455555
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 010215 140 MVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKV 219 (515)
Q Consensus 140 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 219 (515)
+...|...|++++|.++|+++.+.++.+...+..++..+...++.++|++.++++... .|+...+..++..+...++.
T Consensus 108 lA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 108 AARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchH
Confidence 5778999999999999999999999988888888889999999999999999999875 56666665555555556667
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHH------HHHHHHH-----HhcCC-
Q 010215 220 ELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISY------STIIQSY-----CRQYN- 287 (515)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------~~li~~~-----~~~g~- 287 (515)
.+|++.++++....|.+...+..+...+.+.|-...|.++..+-... +.+...-+ ..+++.- ....+
T Consensus 186 ~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~ 264 (822)
T PRK14574 186 YDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERF 264 (822)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 66999999987777888999999999999999999999877764422 11111111 1111110 01122
Q ss_pred --hhHHHHHHHHHHHC-CCCCCH-H----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 010215 288 --FSKVYELLDEMQAQ-GCPPNV-V----TYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQ 359 (515)
Q Consensus 288 --~~~A~~~~~~m~~~-g~~~~~-~----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 359 (515)
.+.|+.-++.+... +-.|.. . +..-.+-++...|+..++++.++.+...+.+....+-.++.++|...++++
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 34455556665542 222322 1 222345577889999999999999999887767778899999999999999
Q ss_pred HHHHHHHhhchhCC-----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC------------CCCCHH-hHHHHH
Q 010215 360 EAVYVYQVEMPENG-----VAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEH------------CKPNVQ-TFHPLL 421 (515)
Q Consensus 360 ~A~~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------------~~p~~~-~~~~ll 421 (515)
+|..+|. .+.... ..++......|.-+|...+++++|..+++++.+..+ ..||-. .+..+.
T Consensus 345 kA~~l~~-~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a 423 (822)
T PRK14574 345 KAAPILS-SLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV 423 (822)
T ss_pred HHHHHHH-HHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH
Confidence 9999999 553322 123444467889999999999999999999987321 112222 244556
Q ss_pred HHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcC
Q 010215 422 KSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRY-QTCRLILDEVKQKH 500 (515)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g 500 (515)
..+...|+..+|. +.++++... -+-|......+.+.+...|.+.+|.+.++.... +.|+. .+......+....|
T Consensus 424 ~~~~~~gdl~~Ae-~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~ 498 (822)
T PRK14574 424 QSLVALNDLPTAQ-KKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQ 498 (822)
T ss_pred HHHHHcCCHHHHH-HHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhh
Confidence 7788999999999 999999773 234788889999999999999999999987764 45654 45556666778889
Q ss_pred CHHHHHHHHHHHH
Q 010215 501 MYDAAEKIEAVMK 513 (515)
Q Consensus 501 ~~~~a~~~~~~m~ 513 (515)
+|++|.++.+.+.
T Consensus 499 e~~~A~~~~~~l~ 511 (822)
T PRK14574 499 EWHQMELLTDDVI 511 (822)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999887664
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=3.6e-14 Score=145.26 Aligned_cols=407 Identities=11% Similarity=0.081 Sum_probs=293.6
Q ss_pred cCCHHHHHHHHHHhhhCHHHHHHHHHHhccCCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHH
Q 010215 97 QPSHYLVNKLIHRFKDDWKSALGIFRWAGSCPGYEHS-SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVM 175 (515)
Q Consensus 97 ~p~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li 175 (515)
.|+..--..++..-.++...|+..|.++.+.. +.+ +.++ .++..+...|+.++|+..+++.....+.....+..+.
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA 109 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAA 109 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 34444444555555578999999999986322 222 2344 8889999999999999999999866667777777778
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhH
Q 010215 176 RRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDE 255 (515)
Q Consensus 176 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 255 (515)
..|...|++++|+++|+++.+.. +-++..+..++..+...++.++|++.++++....+ +...+-.++..+...++..+
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp-~~~~~l~layL~~~~~~~~~ 187 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDP-TVQNYMTLSYLNRATDRNYD 187 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc-chHHHHHHHHHHHhcchHHH
Confidence 89999999999999999999864 34677777888899999999999999999766543 44445555555555677767
Q ss_pred HHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH------HHHHHHHH-----HhcCC--
Q 010215 256 AQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVT------YTTVMSYL-----AKSGD-- 322 (515)
Q Consensus 256 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~------~~~li~~~-----~~~g~-- 322 (515)
|++.++++.+.. +-+...+..+..++.+.|-...|+++..+-.+. +.+...- ....+..- ....+
T Consensus 188 AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 188 ALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 999999999875 446777888899999999999999877653321 1211111 11111110 01122
Q ss_pred -HHHHHHHHHHHHhc-CCCCCH-HHH-HH---HHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHH
Q 010215 323 -FEEAIRITEKMKIV-GSKPDS-RFF-NC---LIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHE 395 (515)
Q Consensus 323 -~~~a~~~~~~~~~~-~~~~~~-~~~-~~---li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 395 (515)
.+.|+.-++.+... +..|.. ..| .+ .+-++...|++.+++..|+ .+...+.+....+-..+.++|...++++
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~-~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYE-AMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHH-HhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 34455555555542 222332 222 22 3456778999999999999 9988776655667888999999999999
Q ss_pred HHHHHHHHHHhCCC----CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCC----------CCCC---HHHHHHHH
Q 010215 396 KAFHVLEEMNKLEH----CKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHH----------LSLD---ITTYTLVI 458 (515)
Q Consensus 396 ~A~~~~~~m~~~~~----~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~----------~~p~---~~~~~~li 458 (515)
+|+.+++.+....+ ..++......|.-++...+++++|. .+++.+.+... -.|| ...+..++
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~-~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a 423 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAY-QFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV 423 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHH-HHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH
Confidence 99999999966431 1234444578899999999999999 99999987322 0232 22344567
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010215 459 HGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMK 513 (515)
Q Consensus 459 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 513 (515)
..+...|++.+|++.++++.... +-|......+-..+...|+..+|++.++...
T Consensus 424 ~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 424 QSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 78899999999999999998632 5567777777788899999999999997754
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.79 E-value=1.2e-13 Score=144.36 Aligned_cols=454 Identities=9% Similarity=0.016 Sum_probs=261.7
Q ss_pred cccccccccccccCCCcc-ccccc---ccCCCCChhhHHHHHHHhcCCCCHHHHHHHhhccccCCCCcCCHHHHHHHH--
Q 010215 34 HIVSSSPIESYCSDGARL-DHHQV---LCVDSPRLPDIDVIISKVHVGSSEDEVFQSLKQDHVCNAIQPSHYLVNKLI-- 107 (515)
Q Consensus 34 ~~~~~~l~~~y~~~~~~~-~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~ll-- 107 (515)
..+...|...|.+.|... +.... ....+.|...+.. ++.++........++++... ..-.++...+.+.+
T Consensus 78 ~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~-La~i~~~~kA~~~ye~l~~~---~P~n~~~~~~la~~~~ 153 (987)
T PRK09782 78 IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERS-LAAIPVEVKSVTTVEELLAQ---QKACDAVPTLRCRSEV 153 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH-HHHhccChhHHHHHHHHHHh---CCCChhHHHHHHHHhh
Confidence 455566777777777543 32222 2233334443333 35554444444567777643 11112222222222
Q ss_pred --HHh-hhCHHHHHHHHHHhccCCCCCCCHHHHHHH-HHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-C
Q 010215 108 --HRF-KDDWKSALGIFRWAGSCPGYEHSSEIYEMM-VDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGA-G 182 (515)
Q Consensus 108 --~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~-g 182 (515)
.+. ....+.|.+.++ . ......|++.+.... .+.|.+.|++++|++++.++.+.++.+......+...|.+. +
T Consensus 154 ~~~~l~y~q~eqAl~AL~-l-r~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~ 231 (987)
T PRK09782 154 GQNALRLAQLPVARAQLN-D-ATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQL 231 (987)
T ss_pred ccchhhhhhHHHHHHHHH-H-hhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhC
Confidence 001 123344555554 2 222223345544444 88888899999999999988888877777666666666663 5
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC--CChhhH--------------------
Q 010215 183 QWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIP--PNAHTF-------------------- 240 (515)
Q Consensus 183 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~-------------------- 240 (515)
+ +++..++.. .++.++.....+...|.+.|+.++|.+++.+++...+ |...+|
T Consensus 232 ~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~ 306 (987)
T PRK09782 232 D-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTV 306 (987)
T ss_pred H-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhh
Confidence 5 666666442 2234666666777777777777777766666432100 111110
Q ss_pred -------------------------------------------------------------------------HHHHHHH
Q 010215 241 -------------------------------------------------------------------------NIFIHGW 247 (515)
Q Consensus 241 -------------------------------------------------------------------------~~li~~~ 247 (515)
.-+.-..
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~ 386 (987)
T PRK09782 307 QFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQL 386 (987)
T ss_pred hhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 0000111
Q ss_pred HccCChhHHHHHHHHHHhC-C-C---------------------------------------------------------
Q 010215 248 CKINRVDEAQWTIQEMKGH-G-C--------------------------------------------------------- 268 (515)
Q Consensus 248 ~~~g~~~~A~~~~~~~~~~-~-~--------------------------------------------------------- 268 (515)
.+.|+.++|.++|+..... + -
T Consensus 387 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (987)
T PRK09782 387 MQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVR 466 (987)
T ss_pred HHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHH
Confidence 2234444455444444321 0 0
Q ss_pred -----Cc--cHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 010215 269 -----HP--CVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPD 341 (515)
Q Consensus 269 -----~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 341 (515)
++ +...|..+..++.. ++.++|+..+.+.... .|+......+...+...|++++|...++++... +|+
T Consensus 467 al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~ 541 (987)
T PRK09782 467 LLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMS 541 (987)
T ss_pred hcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCC
Confidence 11 22233333333333 4555666655555543 344433333344445777888888777776543 344
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHH
Q 010215 342 SRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLL 421 (515)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll 421 (515)
...+..+...+.+.|+.++|...++ ...... +.+...+..+.......|++++|+..+++..+ ..|+...+..+.
T Consensus 542 ~~a~~~la~all~~Gd~~eA~~~l~-qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA 616 (987)
T PRK09782 542 NEDLLAAANTAQAAGNGAARDRWLQ-QAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARA 616 (987)
T ss_pred cHHHHHHHHHHHHCCCHHHHHHHHH-HHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHH
Confidence 4445556667777788888888887 444432 12222333333344455888888888888877 446777788888
Q ss_pred HHHHhcCChHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 010215 422 KSCFKTGKTDECLSQLLDDMVNKHHLSL-DITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITP-RYQTCRLILDEVKQK 499 (515)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~ 499 (515)
..+.+.|+.++|+ ..+++..+. .| +...+..+..++...|++++|+..+++..+ ..| +...+..+..++...
T Consensus 617 ~~l~~lG~~deA~-~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~l 690 (987)
T PRK09782 617 TIYRQRHNVPAAV-SDLRAALEL---EPNNSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRL 690 (987)
T ss_pred HHHHHCCCHHHHH-HHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHC
Confidence 8888888888888 888888762 34 456777777888888888888888888876 334 455677777778888
Q ss_pred CCHHHHHHHHHHHHh
Q 010215 500 HMYDAAEKIEAVMKK 514 (515)
Q Consensus 500 g~~~~a~~~~~~m~~ 514 (515)
|++++|+..++...+
T Consensus 691 Gd~~eA~~~l~~Al~ 705 (987)
T PRK09782 691 DDMAATQHYARLVID 705 (987)
T ss_pred CCHHHHHHHHHHHHh
Confidence 888888888887654
No 24
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=3.2e-13 Score=121.16 Aligned_cols=421 Identities=15% Similarity=0.185 Sum_probs=287.2
Q ss_pred hhhHHHHHHHhcCCCCHHH--HHHHhhccccCCCCcCCHHHHHHHHHHhh--h--CHH-HHHHHHHHhccCCCCCCCHHH
Q 010215 64 LPDIDVIISKVHVGSSEDE--VFQSLKQDHVCNAIQPSHYLVNKLIHRFK--D--DWK-SALGIFRWAGSCPGYEHSSEI 136 (515)
Q Consensus 64 ~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~g~~p~~~~~~~ll~~~~--~--~~~-~a~~~~~~~~~~~~~~~~~~~ 136 (515)
+++=|.++.-+..+...++ ++++|.+. |+..++..-..++...+ + ++. ...+.|..+ .+.|-. +..+
T Consensus 116 V~~E~nL~kmIS~~EvKDs~ilY~~m~~e----~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~-~~~~E~-S~~s 189 (625)
T KOG4422|consen 116 VETENNLLKMISSREVKDSCILYERMRSE----NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGM-RNFGED-STSS 189 (625)
T ss_pred hcchhHHHHHHhhcccchhHHHHHHHHhc----CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhc-cccccc-cccc
Confidence 4455666655555555444 78888876 77777777666666432 1 111 112233333 222221 1122
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 010215 137 YEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKE 216 (515)
Q Consensus 137 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 216 (515)
.|.|.+.+ -+|+. -+.+..++..+|.++++--..+.|.+++++......+.+..+||.+|.+-.-.
T Consensus 190 --------WK~G~vAd--L~~E~----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~ 255 (625)
T KOG4422|consen 190 --------WKSGAVAD--LLFET----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS 255 (625)
T ss_pred --------cccccHHH--HHHhh----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh
Confidence 24454433 33433 34466777778999999999999999999998877788999999998775544
Q ss_pred CCHHHHHHHHHHhh-cCCCCChhhHHHHHHHHHccCChhHH----HHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhH-
Q 010215 217 GKVELARSVFLELK-SCIPPNAHTFNIFIHGWCKINRVDEA----QWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSK- 290 (515)
Q Consensus 217 ~~~~~a~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~- 290 (515)
. ..++..+|. ....||..++|+++.+..+.|+++.| .+++.+|++.|+.|...+|..+|..+++.++..+
T Consensus 256 ~----~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~ 331 (625)
T KOG4422|consen 256 V----GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKV 331 (625)
T ss_pred c----cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhh
Confidence 3 366676644 46889999999999999999987754 5678889999999999999999999998887644
Q ss_pred HHHHHHHHHH----CCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCC---HHHHHHHHHHHHhc
Q 010215 291 VYELLDEMQA----QGCPP----NVVTYTTVMSYLAKSGDFEEAIRITEKMKIVG----SKPD---SRFFNCLIYTLGRA 355 (515)
Q Consensus 291 A~~~~~~m~~----~g~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~ 355 (515)
|..++.+++. ..++| |...|...++.|.+..+.+.|.++..-+.... +.|+ ..-|..+....|..
T Consensus 332 as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~ 411 (625)
T KOG4422|consen 332 ASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQM 411 (625)
T ss_pred hHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHH
Confidence 5555555554 22222 55678888999999999999999887765421 2233 23466777888889
Q ss_pred CCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcC-------
Q 010215 356 SRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTG------- 428 (515)
Q Consensus 356 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g------- 428 (515)
...+.-...|+ .|.-.-.-|+..+...++++..-.|.++-.-++|.+++..| ..-+...-.-++..+++..
T Consensus 412 es~~~~~~~Y~-~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g-ht~r~~l~eeil~~L~~~k~hp~tp~ 489 (625)
T KOG4422|consen 412 ESIDVTLKWYE-DLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG-HTFRSDLREEILMLLARDKLHPLTPE 489 (625)
T ss_pred HHHHHHHHHHH-HhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh-hhhhHHHHHHHHHHHhcCCCCCCChH
Confidence 99999999999 77777777888999999999999999998889998888877 3333333333333333322
Q ss_pred -------------ChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH---HHHHH
Q 010215 429 -------------KTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDI-TPRY---QTCRL 491 (515)
Q Consensus 429 -------------~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~---~~~~~ 491 (515)
++.++.+..-.++.+ ........+++.-.+.|.|+.++|.+++.-+.+.+- .|-. ....-
T Consensus 490 r~Ql~~~~ak~aad~~e~~e~~~~R~r~---~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~E 566 (625)
T KOG4422|consen 490 REQLQVAFAKCAADIKEAYESQPIRQRA---QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAE 566 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHh---ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHH
Confidence 111122111222222 334555678888889999999999999999965432 2333 33445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 010215 492 ILDEVKQKHMYDAAEKIEAVMK 513 (515)
Q Consensus 492 ll~~~~~~g~~~~a~~~~~~m~ 513 (515)
+..+-...++...|...++.|.
T Consensus 567 l~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 567 LMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 6666677888888888887663
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.73 E-value=3e-12 Score=134.12 Aligned_cols=348 Identities=11% Similarity=0.055 Sum_probs=257.7
Q ss_pred CCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCC---HHH
Q 010215 147 VRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTF--GLEKNTETMNLLLDTLCKEGK---VEL 221 (515)
Q Consensus 147 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~~~---~~~ 221 (515)
.+...++...++.+-+..+-+......+.-...+.|+.++|.++|...... ...++......++..|.+.+. ..+
T Consensus 355 ~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 355 TRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred cCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 356667777777777766767777766677788899999999999988762 122345555578888887765 333
Q ss_pred HHHH----------------------HHHhh---cCCCC--ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhH
Q 010215 222 ARSV----------------------FLELK---SCIPP--NAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVIS 274 (515)
Q Consensus 222 a~~~----------------------~~~~~---~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 274 (515)
+..+ +.... ...++ +...|..+..++.. ++.++|...+.+.... .|+...
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~ 511 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQ 511 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHH
Confidence 3222 11111 12345 77888889888887 8899999988887765 366544
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 010215 275 YSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGR 354 (515)
Q Consensus 275 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 354 (515)
...+...+...|++++|+..|+++... .|+...+..+..++.+.|++++|.+.++...+.. +.+...+..+.....+
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~ 588 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYI 588 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHh
Confidence 444455557899999999999997654 4555566777788899999999999999998865 3344444444445556
Q ss_pred cCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHH
Q 010215 355 ASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECL 434 (515)
Q Consensus 355 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 434 (515)
.|++++|...++ ...+. .|+...|..+...+.+.|++++|+..+++..+.. +.+...+..+..++...|+.++|+
T Consensus 589 ~Gr~~eAl~~~~-~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~--Pd~~~a~~nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 589 PGQPELALNDLT-RSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE--PNNSNYQAALGYALWDSGDIAQSR 663 (987)
T ss_pred CCCHHHHHHHHH-HHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 699999999999 55443 4678899999999999999999999999999964 445667778888999999999999
Q ss_pred HHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 010215 435 SQLLDDMVNKHHLSL-DITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRY-QTCRLILDEVKQKHMYDAAEKIEAV 511 (515)
Q Consensus 435 ~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~ 511 (515)
..+++..+. .| +...+..+..++...|++++|...+++..+ +.|+. .+.........+..+++.+.+.++.
T Consensus 664 -~~l~~AL~l---~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r 736 (987)
T PRK09782 664 -EMLERAHKG---LPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQNQQRFNFRRLHEEVGR 736 (987)
T ss_pred -HHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 899998873 34 567888999999999999999999999986 55665 3333444445566667777665554
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.72 E-value=1.3e-13 Score=135.69 Aligned_cols=395 Identities=10% Similarity=0.049 Sum_probs=255.4
Q ss_pred hCHHHHHHHHHHhccCCCCC-CCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 010215 112 DDWKSALGIFRWAGSCPGYE-HSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVT-LNTIAKVMRRFSGAGQWEDAVR 189 (515)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~ 189 (515)
++...+..+..++....-.. .-...|-.+.++|-..|++++|...|.+....+..+ .-.+..+...|.+.|+.+.+..
T Consensus 284 ~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~ 363 (1018)
T KOG2002|consen 284 KDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKF 363 (1018)
T ss_pred ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHH
Confidence 57777777777775322111 123457778888888899999998888887765544 4455667888888899999998
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH-
Q 010215 190 TFDELGTFGLEKNTETMNLLLDTLCKEG----KVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMK- 264 (515)
Q Consensus 190 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~- 264 (515)
.|+...+.. +-+..|...|...|...+ ..+.|..+........+.|...|-.+...+....-+.. +.+|....
T Consensus 364 ~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d 441 (1018)
T KOG2002|consen 364 CFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALD 441 (1018)
T ss_pred HHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHH
Confidence 888887752 446677777777777664 45666666666555567778888877777765554444 66665543
Q ss_pred ---hCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 010215 265 ---GHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQ---GCPPNV------VTYTTVMSYLAKSGDFEEAIRITEK 332 (515)
Q Consensus 265 ---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~ 332 (515)
..+-.+.+...|.+...+...|++.+|...|...... ...+|. .+--.+....-..++.+.|.++|..
T Consensus 442 ~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~ 521 (1018)
T KOG2002|consen 442 ILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKS 521 (1018)
T ss_pred HHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 4454567778888888889999999999988887654 122222 1222233334445566666666666
Q ss_pred HHhcC---------------------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHH
Q 010215 333 MKIVG---------------------------------SKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTS 379 (515)
Q Consensus 333 ~~~~~---------------------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 379 (515)
+.+.. ...++..++.+...+.+...+..|..-|.....+....+|+.
T Consensus 522 Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Y 601 (1018)
T KOG2002|consen 522 ILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAY 601 (1018)
T ss_pred HHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchh
Confidence 55432 022222233333334444444444333321111111123444
Q ss_pred HHHHHHHHHHh------------CCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCC
Q 010215 380 TFNTMITMFSH------------HGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHL 447 (515)
Q Consensus 380 ~~~~li~~~~~------------~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 447 (515)
+.-+|.+.|.+ .+..++|+++|.+..+.. +-|...-+.+.-.++..|++.+|. .+|.+..+. ..
T Consensus 602 sliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d--pkN~yAANGIgiVLA~kg~~~~A~-dIFsqVrEa-~~ 677 (1018)
T KOG2002|consen 602 SLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND--PKNMYAANGIGIVLAEKGRFSEAR-DIFSQVREA-TS 677 (1018)
T ss_pred HHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC--cchhhhccchhhhhhhccCchHHH-HHHHHHHHH-Hh
Confidence 44444444432 134677888888888754 566777778888888899999988 888888773 22
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010215 448 SLDITTYTLVIHGLCRANKCEWAYLLFKEMIGH-DITPRYQTCRLILDEVKQKHMYDAAEKIEAVMK 513 (515)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 513 (515)
-...+|-.+.++|...|++..|+++|+...+. .-..+..+...|..++.+.|.+.+|.+.+....
T Consensus 678 -~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 678 -DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred -hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 23456888888999999999999999887654 334566777788888888888888887765543
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.71 E-value=8.4e-13 Score=129.15 Aligned_cols=365 Identities=13% Similarity=0.096 Sum_probs=270.8
Q ss_pred HHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 010215 139 MMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGK 218 (515)
Q Consensus 139 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 218 (515)
...+.+...|++++|.+++.++.+.++....+|..|...|-+.|+.++++..+-...... +.|...|..+.....+.|+
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhccc
Confidence 334445555999999999999999999999999999999999999999999887666543 4577899999999999999
Q ss_pred HHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHH----HHHHHHHHhcCChhHHHHH
Q 010215 219 VELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISY----STIIQSYCRQYNFSKVYEL 294 (515)
Q Consensus 219 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~A~~~ 294 (515)
++.|.-.|.+..+..|++...+---+..|-+.|+...|.+-|.++.....+.|..-. ...+..+...++.+.|++.
T Consensus 223 i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 223 INQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999977677888888888889999999999999999999887422222222 2345667777888999999
Q ss_pred HHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------------------------CCCHHHHH
Q 010215 295 LDEMQAQ-GCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGS---------------------------KPDSRFFN 346 (515)
Q Consensus 295 ~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---------------------------~~~~~~~~ 346 (515)
++..... +-..+...++.++..+.+...++.|......+..... .++..+.
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~- 381 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI- 381 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-
Confidence 8887762 2234556778888888898889998887777665222 2222221
Q ss_pred HHHHHHHh--cCCHHHHHHHHHhhchhCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHH
Q 010215 347 CLIYTLGR--ASRVQEAVYVYQVEMPENG--VAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLK 422 (515)
Q Consensus 347 ~li~~~~~--~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~ 422 (515)
-++-++.. .+...+++..|. .+.. ..-+...|.-+..+|...|++.+|+.+|..+.... ..-+...|..+..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l---~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~-~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFL---VEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE-GYQNAFVWYKLAR 457 (895)
T ss_pred hHhhhhhcccccchHHHHHHHH---HHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc-cccchhhhHHHHH
Confidence 12223333 344444444443 3444 33456688899999999999999999999998865 4555678889999
Q ss_pred HHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHH
Q 010215 423 SCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMI--------GHDITPRYQTCRLILD 494 (515)
Q Consensus 423 ~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~~~~p~~~~~~~ll~ 494 (515)
.|...|..++|+ +.++......+. +...--.|...+-+.|+.++|.+.++.+. ..+..|+.........
T Consensus 458 c~~~l~e~e~A~-e~y~kvl~~~p~--~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d 534 (895)
T KOG2076|consen 458 CYMELGEYEEAI-EFYEKVLILAPD--NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCD 534 (895)
T ss_pred HHHHHhhHHHHH-HHHHHHHhcCCC--chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHH
Confidence 999999999999 899988873322 23344567778899999999999999863 1234455555556666
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 010215 495 EVKQKHMYDAAEKIEAVM 512 (515)
Q Consensus 495 ~~~~~g~~~~a~~~~~~m 512 (515)
.+.+.|+.++-+.+...|
T Consensus 535 ~l~~~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 535 ILFQVGKREEFINTASTL 552 (895)
T ss_pred HHHHhhhHHHHHHHHHHH
Confidence 778888888766655444
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.68 E-value=7.6e-14 Score=125.92 Aligned_cols=387 Identities=14% Similarity=0.136 Sum_probs=205.9
Q ss_pred HHHHHHHHHHhccCCCCCCCHH-HHHHHHHHHHcCCChHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHH
Q 010215 114 WKSALGIFRWAGSCPGYEHSSE-IYEMMVDILGKVRQMDQMRALLEEMSKGHI-VT----LNTIAKVMRRFSGAGQWEDA 187 (515)
Q Consensus 114 ~~~a~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A 187 (515)
..+|+.-++-+.+. .+-|+.. .--.+.+.+.+..++.+|+++++-....-+ ++ ...++.+...+.+.|.++.|
T Consensus 217 ~~ealntyeiivkn-kmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~da 295 (840)
T KOG2003|consen 217 TAEALNTYEIIVKN-KMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDA 295 (840)
T ss_pred HHHHhhhhhhhhcc-cccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhh
Confidence 34566666555433 2333332 223455677777888888888776554333 12 22344444557778888888
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc-------------CCCCChhhHHHHH-----HHHHc
Q 010215 188 VRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKS-------------CIPPNAHTFNIFI-----HGWCK 249 (515)
Q Consensus 188 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------------~~~~~~~~~~~li-----~~~~~ 249 (515)
+..|+...+. .||..+-..|+-++..-|+-++..+.|..+.. ...|+....+.-| .-.-+
T Consensus 296 insfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek 373 (840)
T KOG2003|consen 296 INSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEK 373 (840)
T ss_pred HhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHH
Confidence 8888877764 57766655566666667787777777777422 1122322222221 11111
Q ss_pred cC--ChhHHHHHHHHHHhCCCCccHhH---H------------------HHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 010215 250 IN--RVDEAQWTIQEMKGHGCHPCVIS---Y------------------STIIQSYCRQYNFSKVYELLDEMQAQGCPPN 306 (515)
Q Consensus 250 ~g--~~~~A~~~~~~~~~~~~~~~~~~---~------------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 306 (515)
.+ +.+++.-.--++..--+.|+-.. | -.-..-+.++|+++.|+++++-+.+..-+.-
T Consensus 374 ~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~ 453 (840)
T KOG2003|consen 374 ENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTA 453 (840)
T ss_pred hhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhh
Confidence 11 11111111111111111222100 0 0011234566777777776665554322211
Q ss_pred HHHHHHH------------------------------------HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 010215 307 VVTYTTV------------------------------------MSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIY 350 (515)
Q Consensus 307 ~~~~~~l------------------------------------i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 350 (515)
...-+.+ .+.....|++++|.+.+++.....-.-....|| +.-
T Consensus 454 saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-igl 532 (840)
T KOG2003|consen 454 SAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGL 532 (840)
T ss_pred HHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcc
Confidence 1111110 011122467777777777776543211122222 233
Q ss_pred HHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCCh
Q 010215 351 TLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKT 430 (515)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~ 430 (515)
.+-..|++++|...|- .+... +..+......+...|....++.+|++++.+.... ++.|+.....|...|-+.|+-
T Consensus 533 t~e~~~~ldeald~f~-klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl--ip~dp~ilskl~dlydqegdk 608 (840)
T KOG2003|consen 533 TAEALGNLDEALDCFL-KLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL--IPNDPAILSKLADLYDQEGDK 608 (840)
T ss_pred cHHHhcCHHHHHHHHH-HHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc--CCCCHHHHHHHHHHhhcccch
Confidence 4556777777777775 33211 1235555666666777777777777777766553 455566677777777777777
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHH
Q 010215 431 DECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEV-KQKHMYDAAEKIE 509 (515)
Q Consensus 431 ~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~g~~~~a~~~~ 509 (515)
.+|. +..-+-.+ -++.+.++..-|..-|....-+++|+.+|++..- +.|+..-|..++..| .+.|++++|.+++
T Consensus 609 sqaf-q~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~y 683 (840)
T KOG2003|consen 609 SQAF-QCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLY 683 (840)
T ss_pred hhhh-hhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 7666 44333322 1333555555566666666667777777776642 567777777777666 5567777777776
Q ss_pred HHHH
Q 010215 510 AVMK 513 (515)
Q Consensus 510 ~~m~ 513 (515)
+.+.
T Consensus 684 k~~h 687 (840)
T KOG2003|consen 684 KDIH 687 (840)
T ss_pred HHHH
Confidence 6653
No 29
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.66 E-value=8.5e-13 Score=127.01 Aligned_cols=290 Identities=11% Similarity=0.028 Sum_probs=134.8
Q ss_pred CCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH--HHHHHHHHcCCHHHHHH
Q 010215 147 VRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMN--LLLDTLCKEGKVELARS 224 (515)
Q Consensus 147 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~--~ll~~~~~~~~~~~a~~ 224 (515)
.|+++.|++.+....+......-.+........+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 466666666665544322111111222233335566666666666666543 33332221 22445555666666666
Q ss_pred HHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 010215 225 VFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCP 304 (515)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 304 (515)
.++.+.+..|.+..+...+...|.+.|++++|.+++..+.+.+..++. ....+-
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~------------------------- 228 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE------------------------- 228 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH-------------------------
Confidence 666655555555666666666666666666666666666554322111 111000
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHH
Q 010215 305 PNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTM 384 (515)
Q Consensus 305 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 384 (515)
..+|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|..+++ ...+. .|+.... +
T Consensus 229 --~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~-~~l~~--~~~~~l~--~ 300 (398)
T PRK10747 229 --QQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIIL-DGLKR--QYDERLV--L 300 (398)
T ss_pred --HHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHH-HHHhc--CCCHHHH--H
Confidence 001222222222222333333444333222 13344444555555555555555555555 32221 2222111 1
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 010215 385 ITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRA 464 (515)
Q Consensus 385 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 464 (515)
+.+....++.+++++..+...+.. +-|...+..+...|.+.|++++|. +.|+...+ ..|+...|..+...+.+.
T Consensus 301 l~~~l~~~~~~~al~~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~~A~-~~le~al~---~~P~~~~~~~La~~~~~~ 374 (398)
T PRK10747 301 LIPRLKTNNPEQLEKVLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQEAS-LAFRAALK---QRPDAYDYAWLADALDRL 374 (398)
T ss_pred HHhhccCCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHh---cCCCHHHHHHHHHHHHHc
Confidence 222233355555555555555432 223334445555555555555555 55555544 345555555555555555
Q ss_pred CCHHHHHHHHHHHH
Q 010215 465 NKCEWAYLLFKEMI 478 (515)
Q Consensus 465 g~~~~A~~~~~~m~ 478 (515)
|+.++|.+++++-.
T Consensus 375 g~~~~A~~~~~~~l 388 (398)
T PRK10747 375 HKPEEAAAMRRDGL 388 (398)
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555555543
No 30
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=4.3e-12 Score=115.20 Aligned_cols=299 Identities=13% Similarity=0.050 Sum_probs=148.3
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH--
Q 010215 129 GYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETM-- 206 (515)
Q Consensus 129 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-- 206 (515)
+...|+..+-...-.+-+.|..+.|++.|.+....-|-.|.++..|...... .+.+. .... |.+.|...+
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~---~e~~~----~l~~-~l~~~~h~M~~ 230 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD---IEILS----ILVV-GLPSDMHWMKK 230 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch---HHHHH----HHHh-cCcccchHHHH
Confidence 4455777777777778889999999999999988888888888655443221 11111 1111 111111111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHh-hcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCC--CccHhHHHHH-----
Q 010215 207 NLLLDTLCKEGKVELARSVFLEL-KSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGC--HPCVISYSTI----- 278 (515)
Q Consensus 207 ~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l----- 278 (515)
-.+..++....+.+++.+-...+ ..|++.+...-+....+.-...++++|+.+|+++.+... --|..+|..+
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 12333444445555555555443 234544444444444455555666666666666655420 0133344433
Q ss_pred --------------------------HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010215 279 --------------------------IQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEK 332 (515)
Q Consensus 279 --------------------------i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 332 (515)
.+-|.-.++.++|+..|+..++.+.. ....|+.+.+-|....+...|.+-++.
T Consensus 311 ~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 311 DKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred hhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 33344444455555555554443211 234444444555555555555555555
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC
Q 010215 333 MKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKP 412 (515)
Q Consensus 333 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 412 (515)
..+.. +.|-..|-.|..+|.-.+...-|.-.|+ ...... +.|...|.+|..+|.+.++.++|++.|.+....| ..
T Consensus 390 Avdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfq-kA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~--dt 464 (559)
T KOG1155|consen 390 AVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQ-KALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG--DT 464 (559)
T ss_pred HHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHH-HHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc--cc
Confidence 54443 3444445555555555555555555554 222211 1234455555555555555555555555554443 22
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010215 413 NVQTFHPLLKSCFKTGKTDECLSQLLDDMV 442 (515)
Q Consensus 413 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 442 (515)
+...+..|.+.+-+.++.++|. ..+++-+
T Consensus 465 e~~~l~~LakLye~l~d~~eAa-~~yek~v 493 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAA-QYYEKYV 493 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHH-HHHHHHH
Confidence 3344455555555555555544 4444433
No 31
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.66 E-value=7.6e-13 Score=128.06 Aligned_cols=292 Identities=11% Similarity=0.015 Sum_probs=131.4
Q ss_pred CCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010215 147 VRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVF 226 (515)
Q Consensus 147 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 226 (515)
.|+++.|.+.+....+..+.....+......+.+.|++++|.+.+.+..+....++..........+...|+++.|...+
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45555555555554443333333333334445555555555555555544211111122222344445555555555555
Q ss_pred HHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHH-HHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 010215 227 LELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYS-TIIQSYCRQYNFSKVYELLDEMQAQGCPP 305 (515)
Q Consensus 227 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 305 (515)
+.+.+..|.+..+...+...+.+.|++++|.+.+..+.+.++. +...+. .-..++
T Consensus 177 ~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~----------------------- 232 (409)
T TIGR00540 177 DKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAE----------------------- 232 (409)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH-----------------------
Confidence 5544444445555555555555555555555555555554322 111111 000000
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHH--
Q 010215 306 NVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGS---KPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTST-- 380 (515)
Q Consensus 306 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-- 380 (515)
......+..+.+.+.+..+.+... +.+...+..+...+...|+.++|..+++ ...+. .||...
T Consensus 233 ---------~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~-~~l~~--~pd~~~~~ 300 (409)
T TIGR00540 233 ---------IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIF-DGLKK--LGDDRAIS 300 (409)
T ss_pred ---------HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHH-HHHhh--CCCcccch
Confidence 000111111112222222222110 1244455555555555555555555555 22221 122221
Q ss_pred -HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCH--HhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 010215 381 -FNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNV--QTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLV 457 (515)
Q Consensus 381 -~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~l 457 (515)
...........++.+.+.+.+++..+.. +-|. ....++...|.+.|++++|. +.|+.... ....|+...+..+
T Consensus 301 ~~~l~~~~~l~~~~~~~~~~~~e~~lk~~--p~~~~~~ll~sLg~l~~~~~~~~~A~-~~le~a~a-~~~~p~~~~~~~L 376 (409)
T TIGR00540 301 LPLCLPIPRLKPEDNEKLEKLIEKQAKNV--DDKPKCCINRALGQLLMKHGEFIEAA-DAFKNVAA-CKEQLDANDLAMA 376 (409)
T ss_pred hHHHHHhhhcCCCChHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHHHcccHHHHH-HHHHHhHH-hhcCCCHHHHHHH
Confidence 1111111223355556666666655532 1222 34445666666666666666 66663222 2345666666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 010215 458 IHGLCRANKCEWAYLLFKEMI 478 (515)
Q Consensus 458 i~~~~~~g~~~~A~~~~~~m~ 478 (515)
...+.+.|+.++|.+++++..
T Consensus 377 a~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 666666666666666666643
No 32
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.65 E-value=8.3e-13 Score=127.78 Aligned_cols=289 Identities=10% Similarity=0.005 Sum_probs=174.4
Q ss_pred HcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccH--hHHHHHHHHHHhcCChhHHH
Q 010215 215 KEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCV--ISYSTIIQSYCRQYNFSKVY 292 (515)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~ 292 (515)
..|+++.|.+.+.+..+..+.....+-....++.+.|+.+.|.+.+.+..+.. |+. ...-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHH
Confidence 34555555555554332222222333333445555566666666665554432 222 12222345555566666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH-HHHHHH---Hh----cCCHHHHHHH
Q 010215 293 ELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFN-CLIYTL---GR----ASRVQEAVYV 364 (515)
Q Consensus 293 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~---~~----~g~~~~A~~~ 364 (515)
+.++.+.+.. +-+......+...+...|++++|.+.+..+.+.+.. +...+. .-...+ .. ....+.....
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 6666666553 224445555666666666666666666666655432 222221 111111 11 2223333444
Q ss_pred HHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhH---HHHHHHHHhcCChHHHHHHHHHHH
Q 010215 365 YQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTF---HPLLKSCFKTGKTDECLSQLLDDM 441 (515)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~---~~ll~~~~~~g~~~~A~~~~~~~~ 441 (515)
+. ...+. .+.+...+..+...+...|+.++|.+.+++..+.. ||.... ..........++.+.+. +.++..
T Consensus 252 ~~-~~p~~-~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~---pd~~~~~~~~l~~~~~l~~~~~~~~~-~~~e~~ 325 (409)
T TIGR00540 252 WK-NQPRH-RRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL---GDDRAISLPLCLPIPRLKPEDNEKLE-KLIEKQ 325 (409)
T ss_pred HH-HCCHH-HhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---CCcccchhHHHHHhhhcCCCChHHHH-HHHHHH
Confidence 44 22211 12378889999999999999999999999999854 554421 11222223457777777 888888
Q ss_pred HHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010215 442 VNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMK 513 (515)
Q Consensus 442 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 513 (515)
.+..+-.|+.....++...+.+.|++++|.+.|+........|+..++..+...+.+.|+.++|.+++++-.
T Consensus 326 lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 326 AKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 775444443356778999999999999999999954433468999999999999999999999999998753
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=8.8e-12 Score=112.06 Aligned_cols=343 Identities=14% Similarity=0.187 Sum_probs=250.6
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 010215 131 EHSSEIYEMMVDILGKVRQMDQMRALLEEMSK-GHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLL 209 (515)
Q Consensus 131 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 209 (515)
+.+..++..+|.+++|--..+.|.+++++... ++.+..++++.+|.+-. +....+++.+|....+.||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHH
Confidence 45788999999999999999999999999866 45578899988776543 33337889999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHH----HHhhc-CCCCChhhHHHHHHHHHccCChhH-HHHHHHHHHh----CCCCc----cHhHH
Q 010215 210 LDTLCKEGKVELARSVF----LELKS-CIPPNAHTFNIFIHGWCKINRVDE-AQWTIQEMKG----HGCHP----CVISY 275 (515)
Q Consensus 210 l~~~~~~~~~~~a~~~~----~~~~~-~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~----~~~~~----~~~~~ 275 (515)
+.+..+.|+++.|.+.+ .+|+. |+.|...+|..+|..+++.++..+ |..++.++.. +.++| |..-|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 99999999988766544 45554 799999999999999999888754 4455555432 22222 34556
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 010215 276 STIIQSYCRQYNFSKVYELLDEMQAQG----CPPN---VVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCL 348 (515)
Q Consensus 276 ~~li~~~~~~g~~~~A~~~~~~m~~~g----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 348 (515)
...++.|.+..+.+-|.++..-+.... +.|+ ..-|..+....|+....+.-...|+.|.-.-.-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 778888888888888888765554321 2333 234566777888888999999999999887778888899999
Q ss_pred HHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCC-CH--------H-----HHHHHH-------HHHHhC
Q 010215 349 IYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHG-HH--------E-----KAFHVL-------EEMNKL 407 (515)
Q Consensus 349 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~--------~-----~A~~~~-------~~m~~~ 407 (515)
+.+..-.|.++-.-+++. .+...|..-+...-..++..+++.. .. . -|..++ .+|.+
T Consensus 440 lrA~~v~~~~e~ipRiw~-D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~- 517 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWK-DSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA- 517 (625)
T ss_pred HHHHhhcCcchhHHHHHH-HHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh-
Confidence 999999999999999998 7877775555444444444444433 11 0 111121 22333
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010215 408 EHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYT---LVIHGLCRANKCEWAYLLFKEMIGHDI 482 (515)
Q Consensus 408 ~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~ 482 (515)
..-.....+.+.-.+.+.|..++|. +++..+.++..--|-....+ -+++.-.+.++...|...++-|...+.
T Consensus 518 --~~~~~t~l~~ia~Ll~R~G~~qkA~-e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 518 --QDWPATSLNCIAILLLRAGRTQKAW-EMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred --ccCChhHHHHHHHHHHHcchHHHHH-HHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 2344556777777789999999999 99998876555444444445 556667778899999999999976543
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.64 E-value=1.3e-15 Score=139.98 Aligned_cols=258 Identities=18% Similarity=0.200 Sum_probs=69.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCh
Q 010215 175 MRRFSGAGQWEDAVRTFDELGTFGL-EKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRV 253 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 253 (515)
...+.+.|++++|++++++...... +.|...|..+...+...++.+.|++.++++....+.+...+..++.. ...+++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 4555555666666666543332221 22333334444444455556666666655433333344445555554 455556
Q ss_pred hHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010215 254 DEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQG-CPPNVVTYTTVMSYLAKSGDFEEAIRITEK 332 (515)
Q Consensus 254 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 332 (515)
++|.++++...+. .++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|.+.+++
T Consensus 94 ~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 94 EEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666555554433 2344445555555555666666666655544321 233445555555555566666666666666
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC
Q 010215 333 MKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKP 412 (515)
Q Consensus 333 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 412 (515)
..+.. +.|......++..+...|+.+++..++. ...... +.|...|..+..+|...|+.++|+.+|++..+.. +.
T Consensus 172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~-~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~--p~ 246 (280)
T PF13429_consen 172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALK-RLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN--PD 246 (280)
T ss_dssp HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHH-HHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS--TT
T ss_pred HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHH-HHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc--cc
Confidence 55542 2234455555555555555555555554 322221 2233445555555555566666666666555532 33
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010215 413 NVQTFHPLLKSCFKTGKTDECLSQLLDDM 441 (515)
Q Consensus 413 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 441 (515)
|+.....+..++...|+.++|. ++.++.
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~-~~~~~~ 274 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEAL-RLRRQA 274 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccc-cccccc
Confidence 4555555555555556655555 444433
No 35
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.64 E-value=4.5e-12 Score=122.03 Aligned_cols=282 Identities=10% Similarity=0.058 Sum_probs=190.6
Q ss_pred cCCHHHHHHHHHHhhcCCCCChhh-HHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHH--HHHHHHHhcCChhHHH
Q 010215 216 EGKVELARSVFLELKSCIPPNAHT-FNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYS--TIIQSYCRQYNFSKVY 292 (515)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~ 292 (515)
.|+++.|++......... +++.. |-.......+.|+++.|...+.++.+. .|+..... .....+...|++++|.
T Consensus 97 eGd~~~A~k~l~~~~~~~-~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA-EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 466666665555432211 12222 222233445667777777777776654 34432222 2245666677777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHH
Q 010215 293 ELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDS-------RFFNCLIYTLGRASRVQEAVYVY 365 (515)
Q Consensus 293 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~ 365 (515)
+.++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 7777776654 224566666667777777777777777777765533222 12233333334445667777777
Q ss_pred HhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcC
Q 010215 366 QVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKH 445 (515)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 445 (515)
+ ..... .+.+......+...+...|+.++|.+.+++..+. +|+.... ++.+....++.++++ +..+...+++
T Consensus 253 ~-~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al-~~~e~~lk~~ 324 (398)
T PRK10747 253 K-NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLE-KVLRQQIKQH 324 (398)
T ss_pred H-hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHH-HHHHHHHhhC
Confidence 7 55432 2457788889999999999999999999999883 4665322 233444669999999 8888888743
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010215 446 HLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMK 513 (515)
Q Consensus 446 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 513 (515)
+ -|...+.++...+.+.|++++|.+.|+...+ ..|+..++..+...+.+.|+.++|.++++.-.
T Consensus 325 P--~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 325 G--DTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred C--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3 3566788999999999999999999999996 67999999999999999999999999998653
No 36
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=2e-12 Score=112.14 Aligned_cols=291 Identities=13% Similarity=0.109 Sum_probs=149.2
Q ss_pred CChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010215 148 RQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFL 227 (515)
Q Consensus 148 g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 227 (515)
.+.++|.++|-+|.+.++.+.++..+|.+.|.+.|..+.|+++...+.+. ||...-
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~--------------------- 104 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFE--------------------- 104 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchH---------------------
Confidence 45566666666666666666666666666666666666666666665542 221100
Q ss_pred HhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-
Q 010215 228 ELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPN- 306 (515)
Q Consensus 228 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~- 306 (515)
....+...|..-|...|-+|.|+.+|..+.+.| ..-......|+..|-...+|++|++.-+++.+.+-.+.
T Consensus 105 -------qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~ 176 (389)
T COG2956 105 -------QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR 176 (389)
T ss_pred -------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch
Confidence 001112233344455555555555555555432 11233444555555556666666666555555443322
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHH
Q 010215 307 ---VVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNT 383 (515)
Q Consensus 307 ---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 383 (515)
...|.-+...+....+.+.|..++++..+.+ +..+..--.+.+.+...|+++.|.+.++ .+.+.+..--..+...
T Consensus 177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e-~v~eQn~~yl~evl~~ 254 (389)
T COG2956 177 VEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALE-RVLEQNPEYLSEVLEM 254 (389)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHH-HHHHhChHHHHHHHHH
Confidence 1233444444444556666666666665543 3333344444555666666666666666 5555433333445566
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 010215 384 MITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCR 463 (515)
Q Consensus 384 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 463 (515)
+..+|.+.|+.++....+.++.+.. +....-..+-..-....-.+.|...+.+.+.+ +|+...+..+++.-..
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~~---~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r----~Pt~~gf~rl~~~~l~ 327 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMETN---TGADAELMLADLIELQEGIDAAQAYLTRQLRR----KPTMRGFHRLMDYHLA 327 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcc---CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh----CCcHHHHHHHHHhhhc
Confidence 6666666677766666666666632 33333333333333333334444123333322 4666666666655432
Q ss_pred ---cCCHHHHHHHHHHHHh
Q 010215 464 ---ANKCEWAYLLFKEMIG 479 (515)
Q Consensus 464 ---~g~~~~A~~~~~~m~~ 479 (515)
-|+..+-...++.|..
T Consensus 328 daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 328 DAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cccccchhhhHHHHHHHHH
Confidence 2345555556666653
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.61 E-value=4.1e-15 Score=136.71 Aligned_cols=259 Identities=13% Similarity=0.129 Sum_probs=69.6
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCC-CCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 010215 243 FIHGWCKINRVDEAQWTIQEMKGHG-CHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSG 321 (515)
Q Consensus 243 li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 321 (515)
+...+.+.|++++|++++++..... .+.|...|..+.......++++.|++.++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 3444555555555555554332221 1223333444444444455555555555555544322 33344444444 4555
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchh-CCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 010215 322 DFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPE-NGVAPDTSTFNTMITMFSHHGHHEKAFHV 400 (515)
Q Consensus 322 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 400 (515)
++++|.+++....+. .++...+..++..+.+.++++++..+++ .... ...+.+...|..+...+.+.|+.++|++.
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLE-KLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHH-HHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHH-HHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555544332 2334444455555555566666555555 3222 11234455555555566666666666666
Q ss_pred HHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010215 401 LEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGH 480 (515)
Q Consensus 401 ~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 480 (515)
+++..+.. +.|......++..+...|+.+++. +++....+.. +.|+..|..+..++...|+.++|..++++..+.
T Consensus 169 ~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~-~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 169 YRKALELD--PDDPDARNALAWLLIDMGDYDEAR-EALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHH-HHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHH-HHHHHHHHHC--cCHHHHHHHHHHHhccccccccccccccccccc
Confidence 66666532 223445555555666666666544 5555554422 223334555666666666666666666665541
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010215 481 DITPRYQTCRLILDEVKQKHMYDAAEKIEAVM 512 (515)
Q Consensus 481 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 512 (515)
. +.|+.+...+..++...|+.++|.++....
T Consensus 244 ~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 244 N-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp S-TT-HHHHHHHHHHHT---------------
T ss_pred c-cccccccccccccccccccccccccccccc
Confidence 1 224444445555556666666666555443
No 38
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.61 E-value=7e-11 Score=116.82 Aligned_cols=388 Identities=12% Similarity=0.108 Sum_probs=267.0
Q ss_pred CHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHH
Q 010215 113 DWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGH---IVTLNTIAKVMRRFSGAGQWEDAVR 189 (515)
Q Consensus 113 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 189 (515)
....|++.+..+-... +.+|.+.+.|.+.|.-.|+++.++.+...+.... ..-...+..+.++|-..|++++|..
T Consensus 251 s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~ 328 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFK 328 (1018)
T ss_pred HHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 3456666666664222 4678899999999999999999999999887644 2445567788999999999999999
Q ss_pred HHHHHhhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccC----ChhHHHHHHHHH
Q 010215 190 TFDELGTFGLEKN--TETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKIN----RVDEAQWTIQEM 263 (515)
Q Consensus 190 ~~~~m~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~ 263 (515)
.|.+..+. .+| +..+..+...+...|+++.+...|+.+....|.+..+...|...|+..+ ..+.|..++.+.
T Consensus 329 yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~ 406 (1018)
T KOG2002|consen 329 YYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKV 406 (1018)
T ss_pred HHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH
Confidence 99888765 344 3455678899999999999999999988778888999999999998875 456677777776
Q ss_pred HhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Q 010215 264 KGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQ----AQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIV--- 336 (515)
Q Consensus 264 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--- 336 (515)
.+.. +.|...|-.+...+....-+.. +.+|.... ..+-.+.+...|.+...+...|+++.|...|......
T Consensus 407 ~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~ 484 (1018)
T KOG2002|consen 407 LEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLE 484 (1018)
T ss_pred Hhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhh
Confidence 6553 5577888888887766554443 77766543 4555678889999999999999999999999988764
Q ss_pred CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 010215 337 GSKPDS------RFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDT-STFNTMITMFSHHGHHEKAFHVLEEMNKLEH 409 (515)
Q Consensus 337 ~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 409 (515)
...+|. .+--.+...+-..++.+.|.+.|. .+... .|.- ..|-.+.......+...+|..++.+......
T Consensus 485 ~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk-~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~ 561 (1018)
T KOG2002|consen 485 VANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYK-SILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS 561 (1018)
T ss_pred hcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHH-HHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc
Confidence 112332 122223344444556666666666 33322 1221 1222222122223444444444444443221
Q ss_pred ----------------------------------CCCCHHhHHHHHHHHHh------------cCChHHHHHHHHHHHHH
Q 010215 410 ----------------------------------CKPNVQTFHPLLKSCFK------------TGKTDECLSQLLDDMVN 443 (515)
Q Consensus 410 ----------------------------------~~p~~~~~~~ll~~~~~------------~g~~~~A~~~~~~~~~~ 443 (515)
..+|..+...|...|.. .+..++|+ ++|.+..+
T Consensus 562 ~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAl-q~y~kvL~ 640 (1018)
T KOG2002|consen 562 SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKAL-QLYGKVLR 640 (1018)
T ss_pred CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHH-HHHHHHHh
Confidence 23444444444444432 23456677 77777766
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010215 444 KHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMK 513 (515)
Q Consensus 444 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 513 (515)
. -+.|...-|.+.-.++..|++.+|..+|.+..+.. .-...+|-.+..+|...|+|..|++.|+...
T Consensus 641 ~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~l 707 (1018)
T KOG2002|consen 641 N--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCL 707 (1018)
T ss_pred c--CcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 12366666778888889999999999999988754 3345578888888899999999999988754
No 39
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.61 E-value=5.8e-12 Score=113.96 Aligned_cols=378 Identities=12% Similarity=0.140 Sum_probs=255.6
Q ss_pred CHHHHHHHHHHhc-cCCCCCCC--HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010215 113 DWKSALGIFRWAG-SCPGYEHS--SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVR 189 (515)
Q Consensus 113 ~~~~a~~~~~~~~-~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 189 (515)
.+..|+++++.+. +.+.+..+ ....+.+.-.+.+.|++++|+..|+.+.+..+.-...++ |+-++.--|+-++..+
T Consensus 252 ~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~n-l~i~~f~i~d~ekmke 330 (840)
T KOG2003|consen 252 EFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALN-LIICAFAIGDAEKMKE 330 (840)
T ss_pred hHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhh-hhhhheecCcHHHHHH
Confidence 4678888888775 22333322 345666667788999999999999999887765555554 4556666789999999
Q ss_pred HHHHHhhCCCCCCHH------------HHHHHH-----HHHHHcCC--HHHHHHHHHHhhc-CCCCChhh----------
Q 010215 190 TFDELGTFGLEKNTE------------TMNLLL-----DTLCKEGK--VELARSVFLELKS-CIPPNAHT---------- 239 (515)
Q Consensus 190 ~~~~m~~~g~~~~~~------------~~~~ll-----~~~~~~~~--~~~a~~~~~~~~~-~~~~~~~~---------- 239 (515)
.|.+|......||.. ..+..+ +-.-+.+. .++++-.-..+.. -+.|+-..
T Consensus 331 af~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk 410 (840)
T KOG2003|consen 331 AFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLK 410 (840)
T ss_pred HHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHH
Confidence 999997654333322 222221 11212111 1122111111111 12222110
Q ss_pred ---H--------HHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHH------------------------------
Q 010215 240 ---F--------NIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTI------------------------------ 278 (515)
Q Consensus 240 ---~--------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l------------------------------ 278 (515)
+ -.-..-|.+.|+++.|.+++.-+.+..-+.-...-+.|
T Consensus 411 ~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~ 490 (840)
T KOG2003|consen 411 ASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNA 490 (840)
T ss_pred HhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCH
Confidence 0 11234688899999999888877654211111111111
Q ss_pred ------HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 010215 279 ------IQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTL 352 (515)
Q Consensus 279 ------i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 352 (515)
.+....+|++++|.+.|++.+...-.- ....-.+.-.+-..|++++|++.|-++... +..+..+.-.+...|
T Consensus 491 ~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc-~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiy 568 (840)
T KOG2003|consen 491 AALTNKGNIAFANGDLDKAAEFYKEALNNDASC-TEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIY 568 (840)
T ss_pred HHhhcCCceeeecCcHHHHHHHHHHHHcCchHH-HHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHH
Confidence 011124688999999999988763322 222333344567889999999999887653 245677888888999
Q ss_pred HhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHH
Q 010215 353 GRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDE 432 (515)
Q Consensus 353 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 432 (515)
-...+...|.+++. .... -++.|+.....+...|-+.|+-.+|.++.-+--+- .+-+..+...|...|....-+++
T Consensus 569 e~led~aqaie~~~-q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyry--fp~nie~iewl~ayyidtqf~ek 644 (840)
T KOG2003|consen 569 ELLEDPAQAIELLM-QANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY--FPCNIETIEWLAAYYIDTQFSEK 644 (840)
T ss_pred HHhhCHHHHHHHHH-Hhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc--cCcchHHHHHHHHHHHhhHHHHH
Confidence 99999999999987 4432 24557889999999999999999999988765552 56678888888888888888999
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 010215 433 CLSQLLDDMVNKHHLSLDITTYTLVIHG-LCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMY 502 (515)
Q Consensus 433 A~~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 502 (515)
++ .+|++..- ++|+..-|..||.. +.+.|++++|.++++...+ .++-|......|++.|...|..
T Consensus 645 ai-~y~ekaal---iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 645 AI-NYFEKAAL---IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HH-HHHHHHHh---cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccch
Confidence 99 99988854 78999999988765 5678999999999999876 5677888888888888776653
No 40
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.59 E-value=5.9e-10 Score=105.71 Aligned_cols=403 Identities=10% Similarity=0.002 Sum_probs=305.7
Q ss_pred cCCCCcCCHHHHHHHHHHhh--hCHHHHHHHHHHhccCCCCC--CCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCC
Q 010215 92 VCNAIQPSHYLVNKLIHRFK--DDWKSALGIFRWAGSCPGYE--HSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVT 167 (515)
Q Consensus 92 ~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 167 (515)
...|+..+...|..=-.+|- +..-.+..+..-.. -.|+. --..+|..-...|.+.+.++-|+.+|....+-.+..
T Consensus 471 ~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avi-gigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k 549 (913)
T KOG0495|consen 471 QANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVI-GIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCK 549 (913)
T ss_pred hhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHH-hhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccch
Confidence 45688888887776666654 23333333333331 11221 124578888889999999999999999988877777
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 010215 168 LNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGW 247 (515)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 247 (515)
.......+..--..|..++...+|++.... .+.....|......+-..|++..|..++...-...+.+...|-+-+..-
T Consensus 550 ~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle 628 (913)
T KOG0495|consen 550 KSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLE 628 (913)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHh
Confidence 677766666666788899999999998875 2445556666677777889999999999997666777889999999999
Q ss_pred HccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010215 248 CKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAI 327 (515)
Q Consensus 248 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 327 (515)
.....++.|..+|.+.... .|+...|.--+..---.+..++|++++++.++. ++.-...|..+...+-+.++++.|.
T Consensus 629 ~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR 705 (913)
T KOG0495|consen 629 FENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAR 705 (913)
T ss_pred hccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999998875 477778877676666788999999999988876 3323556777778888999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010215 328 RITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKL 407 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 407 (515)
+.|..-.+. ++.....|-.|...=-+.|.+..|..+++ .-.-++ +.+...|...|..-.+.|+.+.|..+..+..+.
T Consensus 706 ~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ild-rarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 706 EAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILD-RARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred HHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHH-HHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888876654 35566778778787788899999999998 554443 347889999999999999999999999998885
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 010215 408 EHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQ 487 (515)
Q Consensus 408 ~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 487 (515)
++-+...|..-|...-+.++-..++ . .+.+ .+-|++....+...+....++++|.++|.+.++.+ +-+-.
T Consensus 783 --cp~sg~LWaEaI~le~~~~rkTks~-D---ALkk---ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD 852 (913)
T KOG0495|consen 783 --CPSSGLLWAEAIWLEPRPQRKTKSI-D---ALKK---CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGD 852 (913)
T ss_pred --CCccchhHHHHHHhccCcccchHHH-H---HHHh---ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-Cccch
Confidence 4556667777777666666644433 2 2322 44577778888889999999999999999998643 33456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 010215 488 TCRLILDEVKQKHMYDAAEKIEAVM 512 (515)
Q Consensus 488 ~~~~ll~~~~~~g~~~~a~~~~~~m 512 (515)
+|.-+..-..++|..++-.++++..
T Consensus 853 ~wa~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 853 AWAWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 7888888889999888888877764
No 41
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.59 E-value=5.5e-11 Score=116.71 Aligned_cols=359 Identities=12% Similarity=0.079 Sum_probs=270.3
Q ss_pred hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010215 112 DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTF 191 (515)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 191 (515)
++.+.|.+++..++++. +.....|..|...|-..|+.+++...+--+...++.++..+..+.....+.|++++|.-.|
T Consensus 153 g~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 68999999999997443 5578899999999999999999999998888888889988888899999999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCh-h----hHHHHHHHHHccCChhHHHHHHHHHHhC
Q 010215 192 DELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNA-H----TFNIFIHGWCKINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~----~~~~li~~~~~~g~~~~A~~~~~~~~~~ 266 (515)
.+.++.. +++...+-.-...|-+.|+...|..-|.++-.-.||.. . .-...++.+...++-+.|.+.++.....
T Consensus 231 ~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 9999875 55666666677889999999999999999655444332 2 2233456677778889999988887663
Q ss_pred -CCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---------------------------CHHHHHHHHHHHH
Q 010215 267 -GCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPP---------------------------NVVTYTTVMSYLA 318 (515)
Q Consensus 267 -~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~---------------------------~~~~~~~li~~~~ 318 (515)
+-..+...++.++..+.+...++.|......+......+ +...+ -+.-++.
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~ 388 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLV 388 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhh
Confidence 224456778999999999999999999888877622222 22221 1222334
Q ss_pred hcCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHH
Q 010215 319 KSGDFEEAIRITEKMKIVG--SKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEK 396 (515)
Q Consensus 319 ~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 396 (515)
+....+....+.....+.. ..-+...|.-+.++|...|++.+|..+|. .+......-+...|..+..+|...|.+++
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~-~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLS-PITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHH-HHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 4444455555555555544 34456788899999999999999999999 77665555568899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHH-------cCCCCCCHHHHHHHHHHHHhcCCHHH
Q 010215 397 AFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVN-------KHHLSLDITTYTLVIHGLCRANKCEW 469 (515)
Q Consensus 397 A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-------~~~~~p~~~~~~~li~~~~~~g~~~~ 469 (515)
|.+.|+...... +-+...-..|...+.+.|+.++|+ +.+..+.. ..+..|+...-....+.+...|+.++
T Consensus 468 A~e~y~kvl~~~--p~~~D~Ri~Lasl~~~~g~~Ekal-EtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 468 AIEFYEKVLILA--PDNLDARITLASLYQQLGNHEKAL-ETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHhcC--CCchhhhhhHHHHHHhcCCHHHHH-HHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 999999999854 333445566777788999999999 88887542 12344555555566677888888887
Q ss_pred HHHHHHHHH
Q 010215 470 AYLLFKEMI 478 (515)
Q Consensus 470 A~~~~~~m~ 478 (515)
=+.+...|+
T Consensus 545 fi~t~~~Lv 553 (895)
T KOG2076|consen 545 FINTASTLV 553 (895)
T ss_pred HHHHHHHHH
Confidence 655554443
No 42
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=1.8e-11 Score=106.31 Aligned_cols=224 Identities=14% Similarity=0.101 Sum_probs=143.2
Q ss_pred HhhhCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCH
Q 010215 109 RFKDDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTL----NTIAKVMRRFSGAGQW 184 (515)
Q Consensus 109 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~ 184 (515)
-..++++.|.+.|..+.. +-+.+..+.-+|.+.|-..|..|.|+++-..+..+.-.+. -+...|.+-|...|-+
T Consensus 46 LLs~Q~dKAvdlF~e~l~--~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQ--EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred HhhcCcchHHHHHHHHHh--cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 334688899999999963 3344567778899999999999999999998876433332 3455567788888999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc-CCCCC----hhhHHHHHHHHHccCChhHHHHH
Q 010215 185 EDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKS-CIPPN----AHTFNIFIHGWCKINRVDEAQWT 259 (515)
Q Consensus 185 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~----~~~~~~li~~~~~~g~~~~A~~~ 259 (515)
+.|.++|..+.+.| .--......|+..|-...+|++|+.+-+++.+ +..+. ...|.-|...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999998887754 33455666777778777888888777776432 21111 12344455555555666666666
Q ss_pred HHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010215 260 IQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIV 336 (515)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 336 (515)
+.+..+.+ +..+..--.+.+.....|+++.|++.++...+.+..--..+...+..+|.+.|+.++....+..+.+.
T Consensus 203 l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 203 LKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 66655543 12223333444555566666666666666665543333445555556666666666666666655554
No 43
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.55 E-value=8.5e-11 Score=105.29 Aligned_cols=284 Identities=11% Similarity=0.060 Sum_probs=137.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-CCCChhhHHHHHHHHHccCChhHHHHH
Q 010215 181 AGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSC-IPPNAHTFNIFIHGWCKINRVDEAQWT 259 (515)
Q Consensus 181 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~ 259 (515)
.|+|.+|++...+-.+.+- .....|..-..+.-..|+.+.+-.++.++.+. ..++..+.-.........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 3444444444444433331 12222333333444444444444444443221 223333344444444444444544444
Q ss_pred HHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 010215 260 IQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNV-------VTYTTVMSYLAKSGDFEEAIRITEK 332 (515)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~ 332 (515)
++++.+.+ +.+.........+|.+.|++.+...++..+.+.|.-.|. .+|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 44444433 223344444445555555555555555555544433222 2455555555444444444444444
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC
Q 010215 333 MKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKP 412 (515)
Q Consensus 333 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 412 (515)
..+. ...++..-.+++.-+.++|+.++|.++.. +..+++..|+. ...-.+.+.++.+.-++..++-.+.- +-
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~-~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h--~~ 326 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIE-DALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQH--PE 326 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHH-HHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhC--CC
Confidence 4332 23444455555566666666666666665 44444443331 11123445555555555555544432 22
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010215 413 NVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMI 478 (515)
Q Consensus 413 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 478 (515)
++..+..|...|.+.+.+.+|. ..|+...+ ..|+..+|+-+.+++.+.|+..+|.+..++..
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~-~~leaAl~---~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKAS-EALEAALK---LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHH-HHHHHHHh---cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3345556666666666666665 66665544 45666666666666666666666666666654
No 44
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.53 E-value=1.6e-10 Score=103.56 Aligned_cols=286 Identities=13% Similarity=0.085 Sum_probs=223.0
Q ss_pred CCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010215 147 VRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVF 226 (515)
Q Consensus 147 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 226 (515)
.|+|..|+++..+-.+......-.+..-+.+--+.|+.+.+-.++.+..+..-.++...+-+..+.....|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 68999999999887776666666666667888888999999999999887533566677777888888999999999988
Q ss_pred HHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccH-------hHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010215 227 LELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCV-------ISYSTIIQSYCRQYNFSKVYELLDEMQ 299 (515)
Q Consensus 227 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~ 299 (515)
+++....+.++.+.....++|.+.|++.+...++.++.+.|.-.|. .+|+.+++-....+..+.-...++...
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p 256 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP 256 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc
Confidence 8877777888899999999999999999999999999998865543 467777776666666565555666554
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHH
Q 010215 300 AQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTS 379 (515)
Q Consensus 300 ~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 379 (515)
.. .+.++..-..++.-+.+.|+.++|.++..+..+.+..|.. ..+ -...+-++.+.-.+..+......+..| .
T Consensus 257 r~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~~-~~~l~~~d~~~l~k~~e~~l~~h~~~p--~ 329 (400)
T COG3071 257 RK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CRL-IPRLRPGDPEPLIKAAEKWLKQHPEDP--L 329 (400)
T ss_pred HH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HHH-HhhcCCCCchHHHHHHHHHHHhCCCCh--h
Confidence 43 3446677778888889999999999999999888766662 112 234566777766666664555554444 6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010215 380 TFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVN 443 (515)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 443 (515)
.+.++...|.+++.|.+|.+.|+...+ ..|+..+|..+..++.+.|+..+|- +..++...
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~---~~~s~~~~~~la~~~~~~g~~~~A~-~~r~e~L~ 389 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALK---LRPSASDYAELADALDQLGEPEEAE-QVRREALL 389 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh---cCCChhhHHHHHHHHHHcCChHHHH-HHHHHHHH
Confidence 788888999999999999999998887 5699999999999999999999987 77776653
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=7.2e-12 Score=119.02 Aligned_cols=282 Identities=15% Similarity=0.110 Sum_probs=201.1
Q ss_pred ChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010215 149 QMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFG--LEKNTETMNLLLDTLCKEGKVELARSVF 226 (515)
Q Consensus 149 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 226 (515)
+.++|...|..++.....+.-....+.++|...+++++|.++|+.+.+.. ...+.+.|.+.+--+-+ +-++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 45788888888776666555556667888888888888888888887642 11266777776643321 2234444
Q ss_pred HH-hhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 010215 227 LE-LKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPP 305 (515)
Q Consensus 227 ~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 305 (515)
.+ +....+..+.+|.++..+|.-.++.+.|++.|++..+.. +....+|+.+..-+....++|.|...|+..+.....
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r- 487 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR- 487 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-
Confidence 43 445566778889999999998899999999998888764 226778888888888888899998888887654211
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHH
Q 010215 306 NVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMI 385 (515)
Q Consensus 306 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 385 (515)
+-.+|-.+.-.|.+.++++.|+-.|+++.+.+ +.+.+....+...+-+.|+.++|+.+++ ....... .|+..--..+
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~-~A~~ld~-kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYE-KAIHLDP-KNPLCKYHRA 564 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHH-HHHhcCC-CCchhHHHHH
Confidence 23344455677888889999988888888765 5566667777788888889999999888 4333222 2444444455
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010215 386 TMFSHHGHHEKAFHVLEEMNKLEHCKPN-VQTFHPLLKSCFKTGKTDECLSQLLDDMVN 443 (515)
Q Consensus 386 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 443 (515)
..+...+++++|+..++++++ +.|+ ...|..+...|.+.|+.+.|+ .-|.-+.+
T Consensus 565 ~il~~~~~~~eal~~LEeLk~---~vP~es~v~~llgki~k~~~~~~~Al-~~f~~A~~ 619 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKE---LVPQESSVFALLGKIYKRLGNTDLAL-LHFSWALD 619 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHH---hCcchHHHHHHHHHHHHHHccchHHH-HhhHHHhc
Confidence 666777889999999999888 4455 456777778888889988888 66666654
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=8.3e-12 Score=118.61 Aligned_cols=277 Identities=14% Similarity=0.141 Sum_probs=179.2
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---CCCChhhHHHHHHHHHccCChhHHHHH
Q 010215 183 QWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSC---IPPNAHTFNIFIHGWCKINRVDEAQWT 259 (515)
Q Consensus 183 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~ 259 (515)
+..+|+..|..+.+. +.-.......+.++|.+.+++++|+++|+.+++. ...+..+|.+.+-.+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 456777888775443 2333455666777888888888888888876553 234556666655443321 11222
Q ss_pred H-HHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010215 260 I-QEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPP-NVVTYTTVMSYLAKSGDFEEAIRITEKMKIVG 337 (515)
Q Consensus 260 ~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 337 (515)
+ +.+.+.. +-.+.+|.++.++|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+..+.
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-- 483 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-- 483 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--
Confidence 2 2222221 335677888888888888888888888877765 33 567777777777777788888888877763
Q ss_pred CCCCHHHHH---HHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCH
Q 010215 338 SKPDSRFFN---CLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNV 414 (515)
Q Consensus 338 ~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 414 (515)
.|+..|| .+...|.+.++++.|+-.|+ ...+-+. .+.+....+...+-+.|+.++|+++++++.... +-|+
T Consensus 484 --~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fq-kA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld--~kn~ 557 (638)
T KOG1126|consen 484 --VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQ-KAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD--PKNP 557 (638)
T ss_pred --CCchhhHHHHhhhhheeccchhhHHHHHHH-hhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC--CCCc
Confidence 3444444 44566778888888888887 4443322 245556666667777788888888888877754 2333
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 415 QTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSL-DITTYTLVIHGLCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 415 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 479 (515)
..--.-...+...+++++|+ ..++++.+ +.| +...|..+...|.+.|+.+.|+.-|.-+.+
T Consensus 558 l~~~~~~~il~~~~~~~eal-~~LEeLk~---~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEAL-QELEELKE---LVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred hhHHHHHHHHHhhcchHHHH-HHHHHHHH---hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 33334445566777888887 77777766 344 355666777778888888888877777764
No 47
>PRK12370 invasion protein regulator; Provisional
Probab=99.46 E-value=5.3e-11 Score=119.74 Aligned_cols=270 Identities=8% Similarity=0.032 Sum_probs=167.0
Q ss_pred cCCCCCHHHHHHHHHHHH-----hcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHH---------cCCHHHHHHHH
Q 010215 162 KGHIVTLNTIAKVMRRFS-----GAGQWEDAVRTFDELGTFGLEK-NTETMNLLLDTLCK---------EGKVELARSVF 226 (515)
Q Consensus 162 ~~~~~~~~~~~~li~~~~-----~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ll~~~~~---------~~~~~~a~~~~ 226 (515)
...+.+++++...+++.. ..+.+++|++.|++..+. .| +...|..+..++.. .+++++|...+
T Consensus 250 ~~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~ 327 (553)
T PRK12370 250 ISELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHA 327 (553)
T ss_pred cCCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHH
Confidence 444555555444444431 124577888888887764 34 34455555444332 23467888888
Q ss_pred HHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 010215 227 LELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPN 306 (515)
Q Consensus 227 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 306 (515)
++.....|.+..++..+...+...|++++|...|++..+.+ +.+...|..+...+...|++++|+..+++..+.... +
T Consensus 328 ~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~ 405 (553)
T PRK12370 328 IKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-R 405 (553)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-C
Confidence 87666667777788888888888888888888888887764 334566777777888888888888888887776322 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCC-HHHHHHHH
Q 010215 307 VVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPD-TSTFNTMI 385 (515)
Q Consensus 307 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~li 385 (515)
...+..++..+...|++++|...++++.+...+.+...+..+...|...|+.++|...+. .+... .|+ ....+.+.
T Consensus 406 ~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~-~~~~~--~~~~~~~~~~l~ 482 (553)
T PRK12370 406 AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTK-EISTQ--EITGLIAVNLLY 482 (553)
T ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHH-Hhhhc--cchhHHHHHHHH
Confidence 223333444566678888888888887665323345556667777778888888888887 54332 233 33445555
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHc
Q 010215 386 TMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNK 444 (515)
Q Consensus 386 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 444 (515)
..|...| ++|...++.+.+.....|....+ +-..+.-.|+.+.+ .+|+++.+.
T Consensus 483 ~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~--~~~~~~~~~ 535 (553)
T PRK12370 483 AEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAE--KMWNKFKNE 535 (553)
T ss_pred HHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHH--HHHHHhhcc
Confidence 5666666 46766666665532123332233 33334555666664 445776663
No 48
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.46 E-value=4.8e-08 Score=93.08 Aligned_cols=383 Identities=10% Similarity=0.042 Sum_probs=213.2
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHhcCCHHHHH
Q 010215 114 WKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSK----GHI-VTLNTIAKVMRRFSGAGQWEDAV 188 (515)
Q Consensus 114 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~ 188 (515)
.+.|..++..+. ..++.++.+|-+-...=-..|+.+...++.++-.. .++ .+......=...+-..|..--+.
T Consensus 422 YenAkkvLNkaR--e~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQ 499 (913)
T KOG0495|consen 422 YENAKKVLNKAR--EIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQ 499 (913)
T ss_pred HHHHHHHHHHHH--hhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHH
Confidence 445666777664 33456677776666666667777777666655321 221 23333333333344444444444
Q ss_pred HHHHHHhhCCCC------------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 010215 189 RTFDELGTFGLE------------------------------------KNTETMNLLLDTLCKEGKVELARSVFLELKSC 232 (515)
Q Consensus 189 ~~~~~m~~~g~~------------------------------------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 232 (515)
.+....+..|+. -+...|......--..|..+....++++....
T Consensus 500 AIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~ 579 (913)
T KOG0495|consen 500 AIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ 579 (913)
T ss_pred HHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 444444333332 23333443333333445555555555554444
Q ss_pred CCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 010215 233 IPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTT 312 (515)
Q Consensus 233 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 312 (515)
.|.....|-....-+-..|++..|..++.+..+.. +-+...|-+.+..-..+.++++|..+|.+.... .|+...|.-
T Consensus 580 ~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mK 656 (913)
T KOG0495|consen 580 CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMK 656 (913)
T ss_pred CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHH
Confidence 45555555555555555666666666666665543 224455666666666666666666666665543 445555554
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCC
Q 010215 313 VMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHG 392 (515)
Q Consensus 313 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 392 (515)
-+..---.++.++|.+++++.++.- +.-...|-.+...+-+.++++.|...|..-... ++.....|..+...=-+.|
T Consensus 657 s~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 657 SANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhc
Confidence 4444445566666666666666541 222345555556666666666666666522211 2223445555555555666
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010215 393 HHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYL 472 (515)
Q Consensus 393 ~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 472 (515)
.+-+|..+|++..-.+ +-+...|...+..=.+.|+.+.|. .+..+..++ ++.+...|..-|....+.++-..+..
T Consensus 734 ~~~rAR~ildrarlkN--Pk~~~lwle~Ir~ElR~gn~~~a~-~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~D 808 (913)
T KOG0495|consen 734 QLVRARSILDRARLKN--PKNALLWLESIRMELRAGNKEQAE-LLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSID 808 (913)
T ss_pred chhhHHHHHHHHHhcC--CCcchhHHHHHHHHHHcCCHHHHH-HHHHHHHHh--CCccchhHHHHHHhccCcccchHHHH
Confidence 6667777777666554 445556666666666777777665 555555543 33345566666666666666555444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 473 LFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMKK 514 (515)
Q Consensus 473 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 514 (515)
.+++ ..-|+.+...+...+.....++.|.+.|....+
T Consensus 809 ALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk 845 (913)
T KOG0495|consen 809 ALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK 845 (913)
T ss_pred HHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4443 345666666677777778888888888876543
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=7.5e-10 Score=100.95 Aligned_cols=312 Identities=12% Similarity=0.077 Sum_probs=213.4
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHHc
Q 010215 140 MVDILGKVRQMDQMRALLEEMSKGHIVTLNTIA-KVMRRFSGAGQWEDAVRTFDELGTFGL--EKNTETMNLLLDTLCKE 216 (515)
Q Consensus 140 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~ 216 (515)
+..+|....+.+++..-.+.....+.+...-+. ....+.-...++++|+.+|+++.+... --|..+|..++- .+.
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~ 310 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHh
Confidence 446666666777777777777666554433332 234455567788888888888887621 116677777763 333
Q ss_pred CCHHHHHHHHHH-hhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHH
Q 010215 217 GKVELARSVFLE-LKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELL 295 (515)
Q Consensus 217 ~~~~~a~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 295 (515)
.+-.. ..+.+ ...-.+-.+.|...+.+-|+-.++.++|...|++..+.+ +.....|+.+..-|....+...|++-+
T Consensus 311 ~~skL--s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 311 DKSKL--SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred hhHHH--HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 32221 12222 111223445667778888888888888999998888775 335677888888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCC
Q 010215 296 DEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVA 375 (515)
Q Consensus 296 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 375 (515)
+...+-. +.|-..|-.+.++|.-.+...-|+-.|++..+.. +.|...|.+|..+|.+.++.++|.+.|. .....|-
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCyk-rai~~~d- 463 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYK-RAILLGD- 463 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHH-HHHhccc-
Confidence 8888763 4477888888888888888888888888888764 6778888889999988999999998888 5444432
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh----CCCCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC
Q 010215 376 PDTSTFNTMITMFSHHGHHEKAFHVLEEMNK----LEHCKP-NVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD 450 (515)
Q Consensus 376 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~ 450 (515)
.+...+..+...|-+.++.++|...|.+-++ .|.+.| ....-.-|..-+.+.+++++|- .+...... + .+.
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As-~Ya~~~~~--~-~~e 539 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEAS-YYATLVLK--G-ETE 539 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHH-HHHHHHhc--C-Cch
Confidence 3557788888888888888888888877655 332223 2223333455667888888876 55555543 3 555
Q ss_pred HHHHHHHHHHHHhc
Q 010215 451 ITTYTLVIHGLCRA 464 (515)
Q Consensus 451 ~~~~~~li~~~~~~ 464 (515)
..--..|++.+.+.
T Consensus 540 ~eeak~LlReir~~ 553 (559)
T KOG1155|consen 540 CEEAKALLREIRKI 553 (559)
T ss_pred HHHHHHHHHHHHHh
Confidence 55566666665554
No 50
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.44 E-value=1.4e-10 Score=103.73 Aligned_cols=200 Identities=15% Similarity=0.098 Sum_probs=131.4
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 010215 133 SSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDT 212 (515)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 212 (515)
....+..+...|.+.|++++|.+.|++....++.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 356677777788888888888888888777666666777777777777888888888887777653 3355566667777
Q ss_pred HHHcCCHHHHHHHHHHhhcC--CCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhH
Q 010215 213 LCKEGKVELARSVFLELKSC--IPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSK 290 (515)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 290 (515)
+...|++++|.+.+++.... .+.....+..+...+...|++++|...+++..... +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 77777777777777774321 22334455566666677777777777777666543 2234556666666666777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 291 VYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKI 335 (515)
Q Consensus 291 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 335 (515)
|.+.+++.... .+.+...+..+...+...|+.++|..+.+.+.+
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77776666654 233445555555666666666666666655543
No 51
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=2.4e-08 Score=91.50 Aligned_cols=387 Identities=14% Similarity=0.112 Sum_probs=214.6
Q ss_pred CHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010215 113 DWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFD 192 (515)
Q Consensus 113 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 192 (515)
+...|..+|+.+.. +-..+...|---+++=.++.++..|+.+++.....-|-........+..--..|++.-|.++|+
T Consensus 88 e~~RARSv~ERALd--vd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 88 EIQRARSVFERALD--VDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHHh--cccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 55677888887752 2244667777788888888888888888888766444222222222334445688888888888
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC-CC-Cc
Q 010215 193 ELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH-GC-HP 270 (515)
Q Consensus 193 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~-~~ 270 (515)
+..+ ..|+...|++.++.=.+.+.++.|..+|++..- ..|++..|--....=.++|....|..+|+...+. |- ..
T Consensus 166 rW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~-~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~ 242 (677)
T KOG1915|consen 166 RWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL-VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE 242 (677)
T ss_pred HHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe-ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence 8777 478888888888888888888888888888332 2388888887777777888888888888776543 10 00
Q ss_pred cHhHHHHHHHHHHhcCChhHHHHHHHHHHHC------------------------C-------------------CCCCH
Q 010215 271 CVISYSTIIQSYCRQYNFSKVYELLDEMQAQ------------------------G-------------------CPPNV 307 (515)
Q Consensus 271 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------------g-------------------~~~~~ 307 (515)
+...+.+....=.++..++.|.-+|+-.++. | -+-|-
T Consensus 243 ~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nY 322 (677)
T KOG1915|consen 243 AEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNY 322 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCc
Confidence 1112222222222233333333333222211 0 11233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHH--------HHhcCCHHHHHHHHHhhchhCCCCCC
Q 010215 308 VTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDS--RFFNCLIYT--------LGRASRVQEAVYVYQVEMPENGVAPD 377 (515)
Q Consensus 308 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~ 377 (515)
.+|--.+..-...|+.+...++|+..+..- +|-. ..|...|-. =....+.+.+.++|+ ...+ -++..
T Consensus 323 DsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq-~~l~-lIPHk 399 (677)
T KOG1915|consen 323 DSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ-ACLD-LIPHK 399 (677)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHh-hcCcc
Confidence 445555555566778888888888777652 3321 112111111 123456666666665 3333 12222
Q ss_pred HHHHHHHHHH----HHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHH
Q 010215 378 TSTFNTMITM----FSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITT 453 (515)
Q Consensus 378 ~~~~~~li~~----~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~ 453 (515)
..||.-+--. -.++.+...|.+++...+- .-|-..+|...|..=.+.+++|.+. .++++..+ .+ +-|..+
T Consensus 400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG---~cPK~KlFk~YIelElqL~efDRcR-kLYEkfle-~~-Pe~c~~ 473 (677)
T KOG1915|consen 400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG---KCPKDKLFKGYIELELQLREFDRCR-KLYEKFLE-FS-PENCYA 473 (677)
T ss_pred cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc---cCCchhHHHHHHHHHHHHhhHHHHH-HHHHHHHh-cC-hHhhHH
Confidence 3333333222 2344555666666655543 3455566666665555666666655 56665555 22 113445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010215 454 YTLVIHGLCRANKCEWAYLLFKEMIGHD-ITPRYQTCRLILDEVKQKHMYDAAEKIEAVMK 513 (515)
Q Consensus 454 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 513 (515)
|......-...|+.+.|..+|+-.++.+ +......|.+.+.-=...|.++.|..+++.+.
T Consensus 474 W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL 534 (677)
T KOG1915|consen 474 WSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLL 534 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Confidence 5555555555566666666665555422 11122233333333345555566655555543
No 52
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=3.1e-09 Score=97.68 Aligned_cols=373 Identities=11% Similarity=0.036 Sum_probs=211.8
Q ss_pred CHHHHHHHHHHhccCCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010215 113 DWKSALGIFRWAGSCPGYEHS-SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTF 191 (515)
Q Consensus 113 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 191 (515)
..+.|++.+.|++. ..|| +..|+.....|...|+|++..+.-....+-++.-..++..-.+++-+.|++++|+.=.
T Consensus 130 kY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~ 206 (606)
T KOG0547|consen 130 KYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDV 206 (606)
T ss_pred cHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhh
Confidence 56788888888863 3455 7778888888888888888888877777777776777766677777777777765422
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--------H-hhc-C--CCCChhhHHHHHHHHHc----------
Q 010215 192 DELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFL--------E-LKS-C--IPPNAHTFNIFIHGWCK---------- 249 (515)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--------~-~~~-~--~~~~~~~~~~li~~~~~---------- 249 (515)
.-. .++..+....-...+.+++. + ++. + .-|+....++....+..
T Consensus 207 tv~-------------ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 207 TVL-------------CILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred hHH-------------HHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 211 11111111111111111111 1 111 1 11222222222221110
Q ss_pred ---------------cC---ChhHHHHHHHHHHhC---CCCcc---------HhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010215 250 ---------------IN---RVDEAQWTIQEMKGH---GCHPC---------VISYSTIIQSYCRQYNFSKVYELLDEMQ 299 (515)
Q Consensus 250 ---------------~g---~~~~A~~~~~~~~~~---~~~~~---------~~~~~~li~~~~~~g~~~~A~~~~~~m~ 299 (515)
.+ .+..|...+.+-... ....+ ..+...-...+.-.|+...|.+-|+...
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 00 122222222111100 00001 1111222222344677777777777777
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCC-CH
Q 010215 300 AQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAP-DT 378 (515)
Q Consensus 300 ~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~ 378 (515)
.....++ ..|--+..+|....+.++..+.|++..+.+ +.++.+|..-..++.-.+++++|..-|+ ..... .| +.
T Consensus 354 ~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~-Kai~L--~pe~~ 428 (606)
T KOG0547|consen 354 KLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQ-KAISL--DPENA 428 (606)
T ss_pred hcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHH-HHhhc--Chhhh
Confidence 6543322 226666677778888888888888877765 4455666666666777778888888887 44332 23 34
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCC------CCCHH
Q 010215 379 STFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHL------SLDIT 452 (515)
Q Consensus 379 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~------~p~~~ 452 (515)
..|-.+..+..+.+++++++..|++.++. .+--+..|+.....+...++++.|. +.++..++-... .+.+.
T Consensus 429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~-k~YD~ai~LE~~~~~~~v~~~pl 505 (606)
T KOG0547|consen 429 YAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAV-KQYDKAIELEPREHLIIVNAAPL 505 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHH-HHHHHHHhhccccccccccchhh
Confidence 45555555666777888888888888774 3444667777778888888888888 777777662111 11111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010215 453 TYTLVIHGLCRANKCEWAYLLFKEMIGHDITPR-YQTCRLILDEVKQKHMYDAAEKIEAVM 512 (515)
Q Consensus 453 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m 512 (515)
.-..++..-.+ +++..|.+++++..+ +.|. ...+.+|...-.+.|+.++|+++|++-
T Consensus 506 V~Ka~l~~qwk-~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 506 VHKALLVLQWK-EDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred hhhhHhhhchh-hhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 11222222223 778888888888875 3343 346677777777888888888888764
No 53
>PRK12370 invasion protein regulator; Provisional
Probab=99.40 E-value=7.6e-10 Score=111.41 Aligned_cols=248 Identities=9% Similarity=0.042 Sum_probs=133.8
Q ss_pred HHHHHHHHHHhhcCCCCChhhHHHHHHHHHc---------cCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChh
Q 010215 219 VELARSVFLELKSCIPPNAHTFNIFIHGWCK---------INRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFS 289 (515)
Q Consensus 219 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 289 (515)
.++|...|++..+..|.+...|..+..++.. .+++++|...+++..+.. +-+...|..+...+...|+++
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHH
Confidence 5566677766554445555566555544432 233567777777766654 335556666666666777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 010215 290 KVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEM 369 (515)
Q Consensus 290 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 369 (515)
+|+..|++..+.+ +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++ ..
T Consensus 356 ~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~-~~ 432 (553)
T PRK12370 356 VGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGD-EL 432 (553)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHH-HH
Confidence 7777777766653 2245556666666777777777777777776653 1122222233334455667777777766 43
Q ss_pred hhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhH-HHHHHHHHhcCChHHHHHHHHHHHHHcCCCC
Q 010215 370 PENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTF-HPLLKSCFKTGKTDECLSQLLDDMVNKHHLS 448 (515)
Q Consensus 370 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 448 (515)
.....+-+...+..+..++...|+.++|...+.++... .|+..+. +.+...+...|+ +|. ..++.+.+.....
T Consensus 433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~--~a~-~~l~~ll~~~~~~ 506 (553)
T PRK12370 433 RSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---EITGLIAVNLLYAEYCQNSE--RAL-PTIREFLESEQRI 506 (553)
T ss_pred HHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---cchhHHHHHHHHHHHhccHH--HHH-HHHHHHHHHhhHh
Confidence 33211113344555666666677777777777665542 3443332 333334455553 444 4455554433333
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 449 LDITTYTLVIHGLCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 449 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 479 (515)
+....+.. ..+.-.|+.+.+..+ +++.+
T Consensus 507 ~~~~~~~~--~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 507 DNNPGLLP--LVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred hcCchHHH--HHHHHHhhhHHHHHH-HHhhc
Confidence 33222322 233444555555555 55544
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.39 E-value=4.6e-10 Score=100.38 Aligned_cols=94 Identities=15% Similarity=0.129 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc
Q 010215 170 TIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCK 249 (515)
Q Consensus 170 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 249 (515)
.+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++.....+.+...+..+...+..
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 33344444444455555555444444321 12233344444444444444444444444322223333344444444444
Q ss_pred cCChhHHHHHHHHHH
Q 010215 250 INRVDEAQWTIQEMK 264 (515)
Q Consensus 250 ~g~~~~A~~~~~~~~ 264 (515)
.|++++|...+++..
T Consensus 112 ~g~~~~A~~~~~~~~ 126 (234)
T TIGR02521 112 QGKYEQAMQQFEQAI 126 (234)
T ss_pred cccHHHHHHHHHHHH
Confidence 444444444444443
No 55
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=3.1e-10 Score=98.82 Aligned_cols=234 Identities=11% Similarity=0.018 Sum_probs=179.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 010215 167 TLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHG 246 (515)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 246 (515)
+|-=-..+.++|.+.|.+.+|.+.|+.-.+. .|-+.||..|-++|.+..+...|+.++.+-.+.+|-|+....-+.+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHH
Confidence 4444455688999999999999999887774 67777888888999999999999999988777778888877888888
Q ss_pred HHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010215 247 WCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEA 326 (515)
Q Consensus 247 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 326 (515)
+-..++.++|.++++...+.. +.++.....+...|.-.++++-|+.+|+.+.+.|+. +...|+.+.-+|.-.+++|-+
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhh
Confidence 888899999999998887753 345556666677777888899999999999988876 777888888888888888888
Q ss_pred HHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010215 327 IRITEKMKIVGSKPD--SRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEM 404 (515)
Q Consensus 327 ~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 404 (515)
+.-|.+....--.|+ ..+|-.+.......|++..|.+.|+ .....+ ..+...+|.+.-.-.+.|++++|..++...
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfr-laL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFR-LALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHH-HHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 888888776433333 3456666666667788888888887 433322 224567777777777888888888888877
Q ss_pred Hh
Q 010215 405 NK 406 (515)
Q Consensus 405 ~~ 406 (515)
..
T Consensus 456 ~s 457 (478)
T KOG1129|consen 456 KS 457 (478)
T ss_pred hh
Confidence 66
No 56
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.35 E-value=1.3e-10 Score=113.60 Aligned_cols=251 Identities=15% Similarity=0.236 Sum_probs=148.6
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc-CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 010215 189 RTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKS-CIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHG 267 (515)
Q Consensus 189 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 267 (515)
.++..+...|+.|+..||..++.-||..|+++.|- +|.-|+. ..+.+..+++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 35667788899999999999999999999999988 8888764 47888899999999999999988876
Q ss_pred CCccHhHHHHHHHHHHhcCChhHHHHHHHH-HHH-------CCCCCCHHHHHH--------------HHHHHHhcCCHHH
Q 010215 268 CHPCVISYSTIIQSYCRQYNFSKVYELLDE-MQA-------QGCPPNVVTYTT--------------VMSYLAKSGDFEE 325 (515)
Q Consensus 268 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~-------~g~~~~~~~~~~--------------li~~~~~~g~~~~ 325 (515)
.|...||+.|..+|...||... ++..++ |.. .|+.....-+-. .+.-..-.|-++.
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 5788999999999999999764 222222 221 222211111111 1111122233333
Q ss_pred HHHHHHHHHhcCC-CCCHHHHHHHHHHHHhc-CCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 010215 326 AIRITEKMKIVGS-KPDSRFFNCLIYTLGRA-SRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEE 403 (515)
Q Consensus 326 a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 403 (515)
+.+++..+..... .|... ++.-.... ..+++-..... ...+ .|++.+|.+++.+-.-.|+.+.|..++.+
T Consensus 158 llkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~ck-sl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCK-SLVE---APTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHH-Hhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 3333333221110 01111 12221111 11222222222 1111 36666666666666666777777777777
Q ss_pred HHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 010215 404 MNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANK 466 (515)
Q Consensus 404 m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 466 (515)
|.+.| .+.+..-|..|+-+ .++..-+. .+++.|.+ .|+.|+..|+...+-.+..+|.
T Consensus 230 mke~g-fpir~HyFwpLl~g---~~~~q~~e-~vlrgmqe-~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 230 MKEKG-FPIRAHYFWPLLLG---INAAQVFE-FVLRGMQE-KGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHcC-CCcccccchhhhhc---CccchHHH-HHHHHHHH-hcCCCCcchhHHHHHhhhcchh
Confidence 76666 66666555555544 45555444 55555555 6667776666666655555444
No 57
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.34 E-value=8.4e-09 Score=100.52 Aligned_cols=297 Identities=16% Similarity=0.147 Sum_probs=173.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 010215 137 YEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKE 216 (515)
Q Consensus 137 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 216 (515)
.-....++...|++++|++.+++....-+.....+......+.+.|+.++|..+|..+.+.+ +.|..-|..+..+....
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhh
Confidence 33445566777888888888876554444445555666777888888888888888887764 33444444444444222
Q ss_pred -----CCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChh-HHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhH
Q 010215 217 -----GKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVD-EAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSK 290 (515)
Q Consensus 217 -----~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 290 (515)
.+.+...++|+++....|..... ..+.-.+.....+. .+...+..+..+|+|+ +|+.+-..|....+.+-
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~yp~s~~~-~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKYPRSDAP-RRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAI 161 (517)
T ss_pred cccccccHHHHHHHHHHHHHhCccccch-hHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHH
Confidence 24566677777766555332222 22222222222232 3445556666677543 35555555554444444
Q ss_pred HHHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 010215 291 VYELLDEMQAQ----G----------CPPNV--VTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGR 354 (515)
Q Consensus 291 A~~~~~~m~~~----g----------~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 354 (515)
..+++...... + -.|+. .++..+...|...|++++|++++++.++.. +..+..|..-...|-+
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh 240 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence 44555544321 1 12333 234455666777888888888888877763 3336677777777888
Q ss_pred cCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHh--------HHHHHHHHHh
Q 010215 355 ASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQT--------FHPLLKSCFK 426 (515)
Q Consensus 355 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~--------~~~ll~~~~~ 426 (515)
.|++++|...++ ....... -|-..-+-.+..+.+.|+.++|.+++....+.+ ..|-... ..-...+|.+
T Consensus 241 ~G~~~~Aa~~~~-~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~-~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 241 AGDLKEAAEAMD-EARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTRED-VDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred CCCHHHHHHHHH-HHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC-CCcccCHHHHHHHHHHHHHHHHHHH
Confidence 888888888877 5544322 244555556667778888888888888777655 3332211 1333456777
Q ss_pred cCChHHHHHHHHHHHHH
Q 010215 427 TGKTDECLSQLLDDMVN 443 (515)
Q Consensus 427 ~g~~~~A~~~~~~~~~~ 443 (515)
.|++..|+ +.|..+.+
T Consensus 318 ~~~~~~AL-k~~~~v~k 333 (517)
T PF12569_consen 318 QGDYGLAL-KRFHAVLK 333 (517)
T ss_pred HhhHHHHH-HHHHHHHH
Confidence 88887777 55544433
No 58
>PF13041 PPR_2: PPR repeat family
Probab=99.32 E-value=4.4e-12 Score=81.96 Aligned_cols=49 Identities=33% Similarity=0.713 Sum_probs=28.6
Q ss_pred ccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010215 270 PCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLA 318 (515)
Q Consensus 270 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 318 (515)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 59
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=4.6e-09 Score=98.31 Aligned_cols=287 Identities=10% Similarity=0.008 Sum_probs=143.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHH
Q 010215 200 EKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTII 279 (515)
Q Consensus 200 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 279 (515)
..++.....-.+-+...+++.+..++++.+-+..|+....+..-|.++.+.|+..+-..+=.++.+.- |-...+|-++.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 34444455555555555566666666655555555555555555555555665555555555555442 33445555555
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 010215 280 QSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQ 359 (515)
Q Consensus 280 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 359 (515)
--|...|+..+|.+.|.+....+-. =...|-.....|+-.|..++|+..+...-+.- +-...-+--+.--|.+.++.+
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHH
Confidence 5555556666666666554432111 12345555555555566666655555544421 000001111222345555566
Q ss_pred HHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCCCC-CHHhHHHHHHHHHhcCChHHHH
Q 010215 360 EAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKL----EHCKP-NVQTFHPLLKSCFKTGKTDECL 434 (515)
Q Consensus 360 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~p-~~~~~~~ll~~~~~~g~~~~A~ 434 (515)
-|.+.|. ..... .+.|+...+-+.....+.+.+.+|..+|+..... +.-.+ -..+++.|..+|.+.+.+++|+
T Consensus 398 LAe~Ff~-~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 398 LAEKFFK-QALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHH-HHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 6666655 22111 1223444555544444555566666665555421 00011 2234555555666666666666
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010215 435 SQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEV 496 (515)
Q Consensus 435 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 496 (515)
..+++.... .+.+..++.++.-.|...|+++.|.+.|.+.+ .+.|+..+...+++.+
T Consensus 476 -~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 476 -DYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLA 532 (611)
T ss_pred -HHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHH
Confidence 555555542 12345555555555666666666666666655 3556655555555544
No 60
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=4.4e-09 Score=98.44 Aligned_cols=279 Identities=11% Similarity=0.051 Sum_probs=128.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc
Q 010215 170 TIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCK 249 (515)
Q Consensus 170 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 249 (515)
.+.....-+...+++.+..++++...+.. +++...+..-|..+...|+..+-..+=.++.+..|....+|-++.--|.-
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHH
Confidence 33333444445555555555555554432 33444444444455555554444444344444455555555555555555
Q ss_pred cCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010215 250 INRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRI 329 (515)
Q Consensus 250 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 329 (515)
.|+.++|.+.|.+..... +.=...|-.....|.-.|..|+|+..+...-+.= +-..--+--+.--|.+.++++.|.+.
T Consensus 325 i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKF 402 (611)
T ss_pred hcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHH
Confidence 555555555555544321 1112345555555555555555555554443320 00000111122334445555555555
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchh---CC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010215 330 TEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPE---NG--VAPDTSTFNTMITMFSHHGHHEKAFHVLEEM 404 (515)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 404 (515)
|.+..... +.|+.+.+-+.-.....+.+.+|..+|+..... .+ ......+++.|..+|.+.+.+++|+..+++.
T Consensus 403 f~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 403 FKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 55554432 344444444444444455555555555422100 00 0012234555555555555555555555555
Q ss_pred HhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 010215 405 NKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVI 458 (515)
Q Consensus 405 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li 458 (515)
.... +.+..++.++.-.+...|+++.|+ +.|.+... +.|+-.+-..++
T Consensus 482 L~l~--~k~~~~~asig~iy~llgnld~Ai-d~fhKaL~---l~p~n~~~~~lL 529 (611)
T KOG1173|consen 482 LLLS--PKDASTHASIGYIYHLLGNLDKAI-DHFHKALA---LKPDNIFISELL 529 (611)
T ss_pred HHcC--CCchhHHHHHHHHHHHhcChHHHH-HHHHHHHh---cCCccHHHHHHH
Confidence 5542 344455555555555555555555 55555433 344443333333
No 61
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.4e-08 Score=91.51 Aligned_cols=286 Identities=13% Similarity=0.042 Sum_probs=202.1
Q ss_pred HHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010215 115 KSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDEL 194 (515)
Q Consensus 115 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 194 (515)
..+...+-.+.....++.|+.....+.+.+...|+.++|+..|++....++-+...+....-.+.+.|+.++...+...+
T Consensus 213 s~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~L 292 (564)
T KOG1174|consen 213 SDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYL 292 (564)
T ss_pred chhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHH
Confidence 33444444444456677888888999999999999999999999888888776666665566777888888888777776
Q ss_pred hhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhH
Q 010215 195 GTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVIS 274 (515)
Q Consensus 195 ~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 274 (515)
.... +.....|-.-+......++++.|+.+-++.....+.+...+-.-...+...|+.++|.-.|+...... +-+...
T Consensus 293 f~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~ 370 (564)
T KOG1174|consen 293 FAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEI 370 (564)
T ss_pred Hhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHH
Confidence 5532 23334444444455566778888877777444445566666666677788899999988888877653 346788
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHH
Q 010215 275 YSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVM-SYLA-KSGDFEEAIRITEKMKIVGSKPD-SRFFNCLIYT 351 (515)
Q Consensus 275 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li-~~~~-~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~ 351 (515)
|.-|+..|...|++.+|.-+-+...+. ++-+..+.+.+. ..|. ....-++|.++++...+. .|+ ....+.+...
T Consensus 371 Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL 447 (564)
T KOG1174|consen 371 YRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAEL 447 (564)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHH
Confidence 999999999999988887776654432 233445554442 2222 222347788888877664 444 4456677788
Q ss_pred HHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010215 352 LGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLE 408 (515)
Q Consensus 352 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 408 (515)
+...|..+++..++++.+.. .||....+.+.+.+...+.+++|++.|....+.+
T Consensus 448 ~~~Eg~~~D~i~LLe~~L~~---~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 448 CQVEGPTKDIIKLLEKHLII---FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHhhCccchHHHHHHHHHhh---ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 88889999999998844443 5888888889888888899999999998888743
No 62
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.30 E-value=1.6e-07 Score=86.30 Aligned_cols=363 Identities=10% Similarity=0.053 Sum_probs=246.8
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHH
Q 010215 135 EIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTE-TMNLLLDTL 213 (515)
Q Consensus 135 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~ll~~~ 213 (515)
..|---..-=...+++..|+++|+.....+..+......-+..-.++..+..|..++++.... .|.+. .|--.+.+=
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHH
Confidence 333333333445678899999999998876655555555588888999999999999999874 45332 333445555
Q ss_pred HHcCCHHHHHHHHHH-hhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHH
Q 010215 214 CKEGKVELARSVFLE-LKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVY 292 (515)
Q Consensus 214 ~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 292 (515)
-..|++..|.++|++ |. ..|+...|++.|+.=.+-+.++.|..++++..-. .|++.+|--....=.++|....|.
T Consensus 152 E~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHH
Confidence 667999999999998 54 4699999999999999999999999999998865 599999988888888899999999
Q ss_pred HHHHHHHHC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---------------------------------
Q 010215 293 ELLDEMQAQ-GC-PPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVG--------------------------------- 337 (515)
Q Consensus 293 ~~~~~m~~~-g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------------------------------- 337 (515)
.+|....+. |- ..+...+.+....=.+...++.|.-+|+..+..-
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 999887653 11 0112223333222223444555555554443321
Q ss_pred ----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCH--HHHHHHHH--------HHHhCCCHHHH
Q 010215 338 ----------SKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDT--STFNTMIT--------MFSHHGHHEKA 397 (515)
Q Consensus 338 ----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~li~--------~~~~~g~~~~A 397 (515)
-+.|-.+|--.+..-...|+.+...++|+..+.. ++|-. ..|...|- .=....+.+.+
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan--vpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN--VPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc--CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 1233444555555555667777777777733322 33311 11211111 11235677777
Q ss_pred HHHHHHHHhCCCCCCCHHhHHHHHHHHH----hcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010215 398 FHVLEEMNKLEHCKPNVQTFHPLLKSCF----KTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLL 473 (515)
Q Consensus 398 ~~~~~~m~~~~~~~p~~~~~~~ll~~~~----~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 473 (515)
.++++...+. ++....||..+--.|+ +.-++..|. +++...+ |.-|...+|...|..-.+.+.++....+
T Consensus 386 r~vyq~~l~l--IPHkkFtFaKiWlmyA~feIRq~~l~~AR-kiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 386 RQVYQACLDL--IPHKKFTFAKIWLMYAQFEIRQLNLTGAR-KILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHhh--cCcccchHHHHHHHHHHHHHHHcccHHHH-HHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 7777777763 4555666655544433 566777777 7777664 5678888999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010215 474 FKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVM 512 (515)
Q Consensus 474 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 512 (515)
+++.++-+ +-|..+|.-....=...|+++.|..+|+..
T Consensus 460 YEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelA 497 (677)
T KOG1915|consen 460 YEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELA 497 (677)
T ss_pred HHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99998743 335567766665557789999999998865
No 63
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.29 E-value=1.2e-08 Score=99.39 Aligned_cols=129 Identities=18% Similarity=0.128 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 010215 380 TFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPN-VQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVI 458 (515)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li 458 (515)
++..+...|...|++++|++++++.++. .|+ +..|..-...+-+.|++++|. +.++.... ... -|...-+-.+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~~Aa-~~~~~Ar~-LD~-~DRyiNsK~a 269 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLKEAA-EAMDEARE-LDL-ADRYINSKCA 269 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHHHHH-HHHHHHHh-CCh-hhHHHHHHHH
Confidence 3355566777888888888888888884 355 556777777788888888888 77777765 221 1454555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHH--HHHHHHhcCCHHHHHHHHHHHHh
Q 010215 459 HGLCRANKCEWAYLLFKEMIGHDITPRY------QTCRL--ILDEVKQKHMYDAAEKIEAVMKK 514 (515)
Q Consensus 459 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~--ll~~~~~~g~~~~a~~~~~~m~~ 514 (515)
..+.++|++++|.+++....+.+..|-. ..|.. ...+|.+.|++..|.+-|..+.+
T Consensus 270 Ky~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 270 KYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7778888888888888877665543322 12322 23467778888888887776643
No 64
>PF13041 PPR_2: PPR repeat family
Probab=99.29 E-value=1.1e-11 Score=80.03 Aligned_cols=50 Identities=36% Similarity=0.575 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010215 449 LDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQ 498 (515)
Q Consensus 449 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 498 (515)
||..+|+++|++|++.|++++|.++|++|.+.|+.||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888999999999999999999999999888889999999988888764
No 65
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.26 E-value=2.1e-09 Score=105.39 Aligned_cols=333 Identities=15% Similarity=0.163 Sum_probs=185.6
Q ss_pred CCcCCHHHHHHHHHHhh--hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHH
Q 010215 95 AIQPSHYLVNKLIHRFK--DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIA 172 (515)
Q Consensus 95 g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 172 (515)
|+.|+.+||.++|..++ ++.+.|- +|..|. ....+.+..+++.++......++.+.+. .+..++|.
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~-~ksLpv~e~vf~~lv~sh~~And~Enpk----------ep~aDtyt 87 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFME-IKSLPVREGVFRGLVASHKEANDAENPK----------EPLADTYT 87 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhh-cccccccchhHHHHHhcccccccccCCC----------CCchhHHH
Confidence 66666666666666655 2444333 565553 3334445556666666666655554443 44555566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh--cCCCCChhhHHHHHHHHHcc
Q 010215 173 KVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELK--SCIPPNAHTFNIFIHGWCKI 250 (515)
Q Consensus 173 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~li~~~~~~ 250 (515)
.|..+|.+.|+... |+...+ -...+...+...|.-.....++..+. .+.-||.. ..+....-.
T Consensus 88 ~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~e 152 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLE 152 (1088)
T ss_pred HHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHH
Confidence 66666666666544 222211 12223334444444433333333321 12233332 233344445
Q ss_pred CChhHHHHHHHHHHhCC-CCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010215 251 NRVDEAQWTIQEMKGHG-CHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRI 329 (515)
Q Consensus 251 g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 329 (515)
|-++.+.+++..+.... ..|..+ .++-+... +....++........-.|+..+|..++......|+.+.|..+
T Consensus 153 glwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~l 226 (1088)
T KOG4318|consen 153 GLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNL 226 (1088)
T ss_pred HHHHHHHHHHhhCCcccccchHHH----HHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHH
Confidence 66666666665554321 011111 13332222 233334433333221158999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 010215 330 TEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEH 409 (515)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 409 (515)
+.+|++.|++.+.+-|..|+-+ .++..-+..++. .|.+.|+.|+..|+..-+..+..+|.... .+.|
T Consensus 227 l~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlr-gmqe~gv~p~seT~adyvip~l~N~~t~~--------~~e~- 293 (1088)
T KOG4318|consen 227 LYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLR-GMQEKGVQPGSETQADYVIPQLSNGQTKY--------GEEG- 293 (1088)
T ss_pred HHHHHHcCCCcccccchhhhhc---CccchHHHHHHH-HHHHhcCCCCcchhHHHHHhhhcchhhhh--------cccc-
Confidence 9999999999999988888766 788888899998 99999999999999988888777554211 1222
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHH---------HHHc--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010215 410 CKPNVQTFHPLLKSCFKTGKTDECLSQLLDD---------MVNK--HHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMI 478 (515)
Q Consensus 410 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~---------~~~~--~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 478 (515)
.|....+.+-+.+-+-.|. .|. +.++. ..+. .|+......|...+ -+..+|+-++...+-..|.
T Consensus 294 -sq~~hg~tAavrsaa~rg~--~a~-k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~ 368 (1088)
T KOG4318|consen 294 -SQLAHGFTAAVRSAACRGL--LAN-KRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLL 368 (1088)
T ss_pred -cchhhhhhHHHHHHHhccc--HhH-HHHHHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhc
Confidence 3444444433333333331 112 11111 1110 13333334454333 3344788888888887774
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=2.4e-09 Score=93.36 Aligned_cols=238 Identities=10% Similarity=0.036 Sum_probs=185.0
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHH
Q 010215 236 NAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVT-YTTVM 314 (515)
Q Consensus 236 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~li 314 (515)
|..--+.+.++|.+.|-+.+|.+.|+...+. .|-+.||-.|-..|.+..++..|+.++.+-.+. .|-.+| ...+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~A 297 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQA 297 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhH
Confidence 3334467888999999999999999887765 467778888999999999999999999887765 344444 44566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCH
Q 010215 315 SYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHH 394 (515)
Q Consensus 315 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 394 (515)
..+-..++.++|.++++...+.. +.++.....+...|.-.++++-|...|+ .+..-|.. +...|+.+.-+|...+++
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYR-RiLqmG~~-speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYR-RILQMGAQ-SPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHH-HHHHhcCC-ChHHHhhHHHHHHhhcch
Confidence 77778889999999999988764 5566666677777888899999999998 88887775 778888888888889999
Q ss_pred HHHHHHHHHHHhCCCCCCC--HHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010215 395 EKAFHVLEEMNKLEHCKPN--VQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYL 472 (515)
Q Consensus 395 ~~A~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 472 (515)
+-++..|.+....- ..|+ ...|-.+.......|++.-|. +.|+-... .. .-+...++.|.-.-.+.|++++|..
T Consensus 375 D~~L~sf~RAlsta-t~~~~aaDvWYNlg~vaV~iGD~nlA~-rcfrlaL~-~d-~~h~ealnNLavL~~r~G~i~~Ars 450 (478)
T KOG1129|consen 375 DLVLPSFQRALSTA-TQPGQAADVWYNLGFVAVTIGDFNLAK-RCFRLALT-SD-AQHGEALNNLAVLAARSGDILGARS 450 (478)
T ss_pred hhhHHHHHHHHhhc-cCcchhhhhhhccceeEEeccchHHHH-HHHHHHhc-cC-cchHHHHHhHHHHHhhcCchHHHHH
Confidence 99999998887754 3454 345777777777888988887 78877765 22 2346788888888889999999999
Q ss_pred HHHHHHhCCCCCCH
Q 010215 473 LFKEMIGHDITPRY 486 (515)
Q Consensus 473 ~~~~m~~~~~~p~~ 486 (515)
++....+ +.|+.
T Consensus 451 ll~~A~s--~~P~m 462 (478)
T KOG1129|consen 451 LLNAAKS--VMPDM 462 (478)
T ss_pred HHHHhhh--hCccc
Confidence 9988874 45553
No 67
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.24 E-value=5.4e-07 Score=85.96 Aligned_cols=221 Identities=13% Similarity=0.115 Sum_probs=126.8
Q ss_pred CChhHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcC
Q 010215 286 YNFSKVYELLDEMQAQGCPPN------VVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPD---SRFFNCLIYTLGRAS 356 (515)
Q Consensus 286 g~~~~A~~~~~~m~~~g~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g 356 (515)
|+..+-...|.+..+. +.|. ...|..+...|-..|+++.|..+|++..+...+.- ..+|..-..+=.+..
T Consensus 361 ~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~ 439 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE 439 (835)
T ss_pred CChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence 4444555555555442 2221 23456666777777888888888887776543322 345555555666677
Q ss_pred CHHHHHHHHHhhchhCC----------CCC-------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHH
Q 010215 357 RVQEAVYVYQVEMPENG----------VAP-------DTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHP 419 (515)
Q Consensus 357 ~~~~A~~~~~~~~~~~~----------~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ 419 (515)
+++.|.++.+ ....-. ..| +...|...++.--..|-++....+++++.+..-..|- ....
T Consensus 440 ~~~~Al~lm~-~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPq--ii~N 516 (835)
T KOG2047|consen 440 NFEAALKLMR-RATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQ--IIIN 516 (835)
T ss_pred hHHHHHHHHH-hhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHH--HHHH
Confidence 7777777776 221110 001 2234555555555567777777777777775522232 2222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-
Q 010215 420 LLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRA---NKCEWAYLLFKEMIGHDITPRYQTCRLILDE- 495 (515)
Q Consensus 420 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~- 495 (515)
...-+-...-++++. +++++-+.-+..+.-...|+..+.-+.+. -..+.|..+|++.++ |.+|...-+--|+-+
T Consensus 517 yAmfLEeh~yfeesF-k~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~ 594 (835)
T KOG2047|consen 517 YAMFLEEHKYFEESF-KAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAK 594 (835)
T ss_pred HHHHHHhhHHHHHHH-HHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Confidence 222233455566776 66665555333222345777766655542 468999999999998 777765433333333
Q ss_pred H-HhcCCHHHHHHHHHHH
Q 010215 496 V-KQKHMYDAAEKIEAVM 512 (515)
Q Consensus 496 ~-~~~g~~~~a~~~~~~m 512 (515)
+ -+.|.-..|+.+++..
T Consensus 595 lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 595 LEEEHGLARHAMSIYERA 612 (835)
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 3 3458888888888764
No 68
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=9.2e-08 Score=88.23 Aligned_cols=358 Identities=11% Similarity=0.048 Sum_probs=226.7
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHc
Q 010215 138 EMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKN-TETMNLLLDTLCKE 216 (515)
Q Consensus 138 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~ 216 (515)
-...+-|-+.|++++|++.+.+..+..+..+-.|.....+|...|+|+++.+.-.+..+. .|+ +..+..-..++-..
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQL 196 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhh
Confidence 345567889999999999999998877766677777889999999999999988888774 554 44566667777788
Q ss_pred CCHHHHHHHHHH--hhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHh-CC--CCccHhHHHHHHHHHH--------
Q 010215 217 GKVELARSVFLE--LKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKG-HG--CHPCVISYSTIIQSYC-------- 283 (515)
Q Consensus 217 ~~~~~a~~~~~~--~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~--~~~~~~~~~~li~~~~-------- 283 (515)
|++++|..-..- +..++.... + ..++.-.. -..|....++-.+ .+ +-|+.....+....+.
T Consensus 197 g~~~eal~D~tv~ci~~~F~n~s-~-~~~~eR~L----kk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~ 270 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQNAS-I-EPMAERVL----KKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFD 270 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcccch-h-HHHHHHHH----HHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccccc
Confidence 888877643322 222222111 1 01111100 1112222222111 11 2233222222222111
Q ss_pred ---------------h--cC---ChhHHHHHHHHHHHC-CCCC--C---------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 010215 284 ---------------R--QY---NFSKVYELLDEMQAQ-GCPP--N---------VVTYTTVMSYLAKSGDFEEAIRITE 331 (515)
Q Consensus 284 ---------------~--~g---~~~~A~~~~~~m~~~-g~~~--~---------~~~~~~li~~~~~~g~~~~a~~~~~ 331 (515)
. .+ .+..|...+.+-... -..+ + ..+.......+.-.|+.-.|.+-|+
T Consensus 271 ~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~ 350 (606)
T KOG0547|consen 271 NKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFD 350 (606)
T ss_pred CCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHH
Confidence 0 01 233333333221110 0011 1 1111112222344688899999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 010215 332 KMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCK 411 (515)
Q Consensus 332 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 411 (515)
..++.... +...|--+..+|....+.++....|+ ...+.+. -|+.+|..-.+.+.-.+++++|..=|++.+... +
T Consensus 351 ~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~-~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~--p 425 (606)
T KOG0547|consen 351 AAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFN-KAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD--P 425 (606)
T ss_pred HHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHH-HHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC--h
Confidence 99887533 33337777788999999999999998 5554332 356678777777888899999999999999854 3
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------
Q 010215 412 PNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPR------ 485 (515)
Q Consensus 412 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~------ 485 (515)
-+...|..+..+..+.+.+++++ ..|++..++++ -.++.|+-....+...++++.|.+.|+..++ +.|+
T Consensus 426 e~~~~~iQl~~a~Yr~~k~~~~m-~~Fee~kkkFP--~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--LE~~~~~~~v 500 (606)
T KOG0547|consen 426 ENAYAYIQLCCALYRQHKIAESM-KTFEEAKKKFP--NCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--LEPREHLIIV 500 (606)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCC--CCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--hccccccccc
Confidence 44667777877888999999999 99999998654 3466788889999999999999999999886 3444
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 486 ---YQTCRLILDEVKQKHMYDAAEKIEAVMKK 514 (515)
Q Consensus 486 ---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 514 (515)
+.+...++..-. .+++..|++++++..+
T Consensus 501 ~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e 531 (606)
T KOG0547|consen 501 NAAPLVHKALLVLQW-KEDINQAENLLRKAIE 531 (606)
T ss_pred cchhhhhhhHhhhch-hhhHHHHHHHHHHHHc
Confidence 222222222112 3888999998887654
No 69
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=7e-07 Score=84.51 Aligned_cols=383 Identities=10% Similarity=0.104 Sum_probs=193.2
Q ss_pred hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010215 112 DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTF 191 (515)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 191 (515)
++.++|......+. .+.+-|..++..=+-++.+.+++++|..+.+.-........-.+ .-..+..+.+..++|+..+
T Consensus 26 ~e~e~a~k~~~Kil--~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~f-EKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 26 GEYEEAVKTANKIL--SIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFF-EKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred hHHHHHHHHHHHHH--hcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhH-HHHHHHHHcccHHHHHHHH
Confidence 36777888777775 23356677777777778888888888865554221111111111 1234556778888888888
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCh----------------------------hhHHH-
Q 010215 192 DELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNA----------------------------HTFNI- 242 (515)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------------------~~~~~- 242 (515)
+-.. +.+..+...-...+.+.|++++|..+|..+.+...++. .+|..
T Consensus 103 ~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~ 178 (652)
T KOG2376|consen 103 KGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELL 178 (652)
T ss_pred hccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHH
Confidence 7222 12344555566677888888888888888632211111 11111
Q ss_pred --HHHHHHccCChhHHHHHHHHHHhCCC------Ccc---Hh-----HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 010215 243 --FIHGWCKINRVDEAQWTIQEMKGHGC------HPC---VI-----SYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPN 306 (515)
Q Consensus 243 --li~~~~~~g~~~~A~~~~~~~~~~~~------~~~---~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 306 (515)
..-.+...|++.+|+++++...+.+. ..+ .. .---|...+-..|+.++|.+++....+... +|
T Consensus 179 yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~-~D 257 (652)
T KOG2376|consen 179 YNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP-AD 257 (652)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC-CC
Confidence 12233344555555555555421110 000 00 011122333445555555555555555432 22
Q ss_pred HH----HHHHHHHHHHhcCCH-H-HHHHHHHH-----------------------------------------HHhc-CC
Q 010215 307 VV----TYTTVMSYLAKSGDF-E-EAIRITEK-----------------------------------------MKIV-GS 338 (515)
Q Consensus 307 ~~----~~~~li~~~~~~g~~-~-~a~~~~~~-----------------------------------------~~~~-~~ 338 (515)
.. .-|.++.. ..-.++ + .++..++. .... +.
T Consensus 258 ~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~ 336 (652)
T KOG2376|consen 258 EPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGM 336 (652)
T ss_pred chHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcc
Confidence 21 11111110 000000 0 00000000 0000 00
Q ss_pred CCCHHHHHHHHHHHH--hcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH--------HHHhCC
Q 010215 339 KPDSRFFNCLIYTLG--RASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLE--------EMNKLE 408 (515)
Q Consensus 339 ~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~~ 408 (515)
.|. ..+..++.... +......+..++. ...+..........-.++......|+++.|++++. .+.+.+
T Consensus 337 ~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~-~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~ 414 (652)
T KOG2376|consen 337 SPE-SLFPILLQEATKVREKKHKKAIELLL-QFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAK 414 (652)
T ss_pred Cch-HHHHHHHHHHHHHHHHHHhhhHHHHH-HHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc
Confidence 111 11122221111 1113444555554 33322212223455566677778899999999988 555544
Q ss_pred CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 010215 409 HCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHL-SLD----ITTYTLVIHGLCRANKCEWAYLLFKEMIGHDIT 483 (515)
Q Consensus 409 ~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 483 (515)
..| .+...+...+.+.++.+.|. .++.+....... .+. ..++.-.+..-.+.|+.++|..+++++.+.. +
T Consensus 415 -~~P--~~V~aiv~l~~~~~~~~~a~-~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~ 489 (652)
T KOG2376|consen 415 -HLP--GTVGAIVALYYKIKDNDSAS-AVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-P 489 (652)
T ss_pred -cCh--hHHHHHHHHHHhccCCccHH-HHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-C
Confidence 333 45556666677777766666 666665542111 111 2234444455567799999999999998733 6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010215 484 PRYQTCRLILDEVKQKHMYDAAEKIEAV 511 (515)
Q Consensus 484 p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 511 (515)
+|..+...++.+|++. +.+.|+.+-+.
T Consensus 490 ~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 490 NDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred chHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 7778888888888765 45566555443
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=8.8e-08 Score=86.47 Aligned_cols=307 Identities=13% Similarity=0.071 Sum_probs=204.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHH
Q 010215 166 VTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFG-LEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFI 244 (515)
Q Consensus 166 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 244 (515)
.+|...-.-..+.+-.++...|...+-.+.... ++-|+.....+.+.+...|+.++|+..|++...-.+.+........
T Consensus 194 ~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya 273 (564)
T KOG1174|consen 194 FDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYA 273 (564)
T ss_pred ccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHH
Confidence 345444333344444555555555554444332 3446777788888888888888888888886654444444444444
Q ss_pred HHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 010215 245 HGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFE 324 (515)
Q Consensus 245 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 324 (515)
-.+.+.|+.+....+...+.... .-+...|-.-.......+++..|+.+-++..+.+ +.+...+-.-...+...|+.+
T Consensus 274 ~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~ 351 (564)
T KOG1174|consen 274 VLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHT 351 (564)
T ss_pred HHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchH
Confidence 55567777777777777766532 1234445555555666788888888888777653 224445544456677788888
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHH-HHHH-hCCCHHHHHHHHH
Q 010215 325 EAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMI-TMFS-HHGHHEKAFHVLE 402 (515)
Q Consensus 325 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~g~~~~A~~~~~ 402 (515)
+|.-.|+...... +.+...|..|+.+|...|++.+|...-++.|... ..+..+.+.+. ..+. ....-++|.++++
T Consensus 352 ~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e 428 (564)
T KOG1174|consen 352 QAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF--QNSARSLTLFGTLVLFPDPRMREKAKKFAE 428 (564)
T ss_pred HHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--hcchhhhhhhcceeeccCchhHHHHHHHHH
Confidence 8888888877653 4677888999999998898888877766444432 23444444432 2222 2233478888888
Q ss_pred HHHhCCCCCCCH-HhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010215 403 EMNKLEHCKPNV-QTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHD 481 (515)
Q Consensus 403 ~m~~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 481 (515)
+-.+ +.|+. ...+.+...|...|..+.++ .+++.... ..||....+.|.+.+...+.+++|.+.|...++
T Consensus 429 k~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i-~LLe~~L~---~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr-- 499 (564)
T KOG1174|consen 429 KSLK---INPIYTPAVNLIAELCQVEGPTKDII-KLLEKHLI---IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR-- 499 (564)
T ss_pred hhhc---cCCccHHHHHHHHHHHHhhCccchHH-HHHHHHHh---hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--
Confidence 8777 45664 35666677788889998888 88888766 457888888888999888999999998888875
Q ss_pred CCCCH
Q 010215 482 ITPRY 486 (515)
Q Consensus 482 ~~p~~ 486 (515)
+.|+.
T Consensus 500 ~dP~~ 504 (564)
T KOG1174|consen 500 QDPKS 504 (564)
T ss_pred cCccc
Confidence 44543
No 71
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.22 E-value=5.2e-07 Score=87.97 Aligned_cols=405 Identities=13% Similarity=0.060 Sum_probs=257.9
Q ss_pred CcCCHHHHHHHHHHh--hhCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCC--CCCHHHH
Q 010215 96 IQPSHYLVNKLIHRF--KDDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGH--IVTLNTI 171 (515)
Q Consensus 96 ~~p~~~~~~~ll~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~ 171 (515)
++-|...|..+.-+. ++++..+.+.|+... ++.-.....|..+.-.|..+|.-..|..+++.-.... +.+...+
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~--~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQAL--PFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 444666666555543 467888888888875 4444567889999999999999999999998876655 5555555
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHhhC--CC--CCCHHHHHHHHHHHHHc----C-------CHHHHHHHHHHhhcCCCC
Q 010215 172 AKVMRRFS-GAGQWEDAVRTFDELGTF--GL--EKNTETMNLLLDTLCKE----G-------KVELARSVFLELKSCIPP 235 (515)
Q Consensus 172 ~~li~~~~-~~g~~~~A~~~~~~m~~~--g~--~~~~~~~~~ll~~~~~~----~-------~~~~a~~~~~~~~~~~~~ 235 (515)
......|. +-+..++++++-.+..+. +. ...+..|..+.-+|... . ...++.+.+++..+..+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44444444 356777777777666552 11 12333444444444322 1 134566666665444555
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHH
Q 010215 236 NAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQ-GCPPNVVTYTTVM 314 (515)
Q Consensus 236 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li 314 (515)
|..+...+.--|+..++++.|.+..++..+.+-.-+...|..+.-.+...+++.+|+.+.+..... |. |-.-...-+
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~ 554 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKI 554 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhh
Confidence 666666666778888999999999999988755678899999999999999999999998876653 21 111111111
Q ss_pred HHHHhcCCHHHHHHHHHHHHh---------------------cCC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010215 315 SYLAKSGDFEEAIRITEKMKI---------------------VGS-------KPDSRFFNCLIYTLGRASRVQEAVYVYQ 366 (515)
Q Consensus 315 ~~~~~~g~~~~a~~~~~~~~~---------------------~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~ 366 (515)
..-...++.+++......+.. .|+ .....++..+..... -+.+.+. +.
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a--~~~~~~~--se 630 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA--SQLKSAG--SE 630 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH--hhhhhcc--cc
Confidence 111223444444333322211 000 011122222222111 1111100 00
Q ss_pred hhchhCCCC--CC------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 010215 367 VEMPENGVA--PD------TSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLL 438 (515)
Q Consensus 367 ~~~~~~~~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 438 (515)
..+...... |+ ...|......+.+.+..++|...+.+..... +-....|......+...|...+|. +.|
T Consensus 631 ~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~--~l~~~~~~~~G~~~~~~~~~~EA~-~af 707 (799)
T KOG4162|consen 631 LKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID--PLSASVYYLRGLLLEVKGQLEEAK-EAF 707 (799)
T ss_pred cccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc--hhhHHHHHHhhHHHHHHHhhHHHH-HHH
Confidence 011111111 22 2346666778888999999999999987743 445566666667788899999998 777
Q ss_pred HHHHHcCCCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010215 439 DDMVNKHHLSLD-ITTYTLVIHGLCRANKCEWAYL--LFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMKKL 515 (515)
Q Consensus 439 ~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~l 515 (515)
..... +.|+ +....++..++.+.|+..-|.. ++.++.+.+ +-+...|..+...+.+.|+.+.|.+.|....+|
T Consensus 708 ~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 708 LVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 77755 5565 6678889999999998888887 999999755 456788999999999999999999999876543
No 72
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.22 E-value=1.7e-06 Score=82.83 Aligned_cols=90 Identities=16% Similarity=0.076 Sum_probs=49.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010215 418 HPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD-ITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEV 496 (515)
Q Consensus 418 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 496 (515)
..+...+-+.|+++.|. .+++.... -.|+ ++.|..-.+.+...|++++|..++++..+.+ .||...-.--..-.
T Consensus 375 y~laqh~D~~g~~~~A~-~yId~AId---HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYm 449 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVAL-EYIDLAID---HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHcccHHHHH-HHHHHHhc---cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHH
Confidence 34455566667777766 66666654 2344 3345445566666677777777776666533 34433322333333
Q ss_pred HhcCCHHHHHHHHHHH
Q 010215 497 KQKHMYDAAEKIEAVM 512 (515)
Q Consensus 497 ~~~g~~~~a~~~~~~m 512 (515)
.+..+.++|.++....
T Consensus 450 LrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKF 465 (700)
T ss_pred HHccccHHHHHHHHHh
Confidence 5556666666655443
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.20 E-value=1.7e-07 Score=89.67 Aligned_cols=270 Identities=10% Similarity=-0.021 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 010215 134 SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIV---TLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLL 210 (515)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 210 (515)
+..|..+...+...|+.+.+.+.+....+..+. ...........+...|++++|.+.+++..+.. +.|...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 445666667777777777777777666543332 23333333456677889999999998887752 334444432 2
Q ss_pred HHHH----HcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcC
Q 010215 211 DTLC----KEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQY 286 (515)
Q Consensus 211 ~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 286 (515)
..+. ..+..+.+.+.+.......+........+...+...|++++|...+++..+.. +.+...+..+...+...|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 2222 23445555555544222334444555666778888899999999999888764 345667778888888899
Q ss_pred ChhHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHHHH-H--HHHHHHHhcCCHH
Q 010215 287 NFSKVYELLDEMQAQGC-PPNV--VTYTTVMSYLAKSGDFEEAIRITEKMKIVGS-KPDSRFF-N--CLIYTLGRASRVQ 359 (515)
Q Consensus 287 ~~~~A~~~~~~m~~~g~-~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~g~~~ 359 (515)
++++|+.++++...... .|+. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 99999999888776422 1222 3355677788888999999999988754322 1112111 1 2223333334322
Q ss_pred HHHHH---HHhhchhCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010215 360 EAVYV---YQVEMPENGV-APDTSTFNTMITMFSHHGHHEKAFHVLEEMNKL 407 (515)
Q Consensus 360 ~A~~~---~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 407 (515)
.+.+. .. ....... ............++...|+.++|..+++.+...
T Consensus 243 ~~~~w~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 243 VGDRWEDLAD-YAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred hHHHHHHHHH-HHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 22222 11 1111000 111122224556677788888888888877653
No 74
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.19 E-value=1.3e-08 Score=98.07 Aligned_cols=244 Identities=19% Similarity=0.201 Sum_probs=155.8
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-----C-CCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHhh---c
Q 010215 162 KGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTF-----G-LEKNTETM-NLLLDTLCKEGKVELARSVFLELK---S 231 (515)
Q Consensus 162 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~---~ 231 (515)
...|.-+.+...+...|...|++++|+.+++...+. | ..|.+.+. +.+...|...+++++|..+|+++. .
T Consensus 193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 355556666666788888888888888888776553 2 13444433 347778888889888888888732 1
Q ss_pred ---C--CCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC-----CC-CccH-hHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010215 232 ---C--IPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH-----GC-HPCV-ISYSTIIQSYCRQYNFSKVYELLDEMQ 299 (515)
Q Consensus 232 ---~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 299 (515)
| .+.-..+++.|...|.+.|++++|...+++..+. |. .|.+ ..++.+...+...+++++|..+++...
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 1 2333556777888899999999988888776431 11 1222 235566677788888888888887655
Q ss_pred HC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----C--C-CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010215 300 AQ---GCPPN----VVTYTTVMSYLAKSGDFEEAIRITEKMKIVG----S--K-PDSRFFNCLIYTLGRASRVQEAVYVY 365 (515)
Q Consensus 300 ~~---g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~--~-~~~~~~~~li~~~~~~g~~~~A~~~~ 365 (515)
+. -+.++ ..+++.+...|.+.|++++|.++|++++... - . -....++.|...|.+.+++++|.++|
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~ 432 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLF 432 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHH
Confidence 42 11222 3567888888888888888888888776421 1 1 11345566667777777777777776
Q ss_pred Hh---hchhCCC-CCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010215 366 QV---EMPENGV-APD-TSTFNTMITMFSHHGHHEKAFHVLEEMN 405 (515)
Q Consensus 366 ~~---~~~~~~~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 405 (515)
.. .+...|. .|+ ..+|..|...|...|++++|+++.+...
T Consensus 433 ~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 433 EEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 61 1122221 122 3456666666666677766666665554
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.18 E-value=4.4e-08 Score=90.38 Aligned_cols=204 Identities=11% Similarity=-0.038 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHh
Q 010215 205 TMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCR 284 (515)
Q Consensus 205 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 284 (515)
.|..+...+...|+.++|...|++.....|.+...|+.+...+...|++++|...|++..+.. +-+..+|..+..++..
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 345555556666666666666666444445556666666666666666666666666666542 2234555666666666
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH--HH
Q 010215 285 QYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQE--AV 362 (515)
Q Consensus 285 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~--A~ 362 (515)
.|++++|++.|+...+. .|+..........+...++.++|.+.+.+..... .++... ..+...+ .|+... +.
T Consensus 145 ~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~-~~~~~~~--lg~~~~~~~~ 218 (296)
T PRK11189 145 GGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWG-WNIVEFY--LGKISEETLM 218 (296)
T ss_pred CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccH-HHHHHHH--ccCCCHHHHH
Confidence 66666666666666654 2222111111222334556666666665544321 222211 1222222 333322 22
Q ss_pred HHHHhhchhCCC--C-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHH
Q 010215 363 YVYQVEMPENGV--A-PDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFH 418 (515)
Q Consensus 363 ~~~~~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~ 418 (515)
..+.... +... . .....|..+...+.+.|++++|+..|++..+.+ +||..-+.
T Consensus 219 ~~~~~~~-~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~--~~~~~e~~ 274 (296)
T PRK11189 219 ERLKAGA-TDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN--VYNFVEHR 274 (296)
T ss_pred HHHHhcC-CCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CchHHHHH
Confidence 2221011 1100 0 123467777778888888888888888887744 34544443
No 76
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.16 E-value=4.3e-08 Score=94.49 Aligned_cols=246 Identities=17% Similarity=0.178 Sum_probs=132.5
Q ss_pred CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC-----CC-CccHhH-HHHHHHHHHhcCChhHHHHHHHHHHHC---
Q 010215 232 CIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH-----GC-HPCVIS-YSTIIQSYCRQYNFSKVYELLDEMQAQ--- 301 (515)
Q Consensus 232 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~--- 301 (515)
..|.-..+...+...|...|+++.|..+++...+. |. .|...+ .+.+...|...+++++|..+|+++...
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34445566667888888888888888888776543 10 122222 233556677777888888877776641
Q ss_pred --CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhhch
Q 010215 302 --GC-PP-NVVTYTTVMSYLAKSGDFEEAIRITEKMKIV-----GS-KPDS-RFFNCLIYTLGRASRVQEAVYVYQVEMP 370 (515)
Q Consensus 302 --g~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~ 370 (515)
|- .| -..+++.|..+|.+.|++++|...++...+. |. .|.+ ..++.+...++..+++++|..++...+.
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 21 11 1345666666777777777777766655431 11 1111 1234445556666666666666552111
Q ss_pred h--CCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhC-----CCCCCC-HHhHHHHHHHHHhcCChHHHHHHHH
Q 010215 371 E--NGVAPD----TSTFNTMITMFSHHGHHEKAFHVLEEMNKL-----EHCKPN-VQTFHPLLKSCFKTGKTDECLSQLL 438 (515)
Q Consensus 371 ~--~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~ 438 (515)
. .-+.++ ..+++.|...|.+.|++++|.+++++++.. |+..+. ...++.+...|.+.+.+++|. ++|
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~-~l~ 432 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAE-QLF 432 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHH-HHH
Confidence 1 001111 235566666666666666666666665542 111111 234455555566666666555 555
Q ss_pred HHHHH---cCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010215 439 DDMVN---KHHL-SLD-ITTYTLVIHGLCRANKCEWAYLLFKEMI 478 (515)
Q Consensus 439 ~~~~~---~~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 478 (515)
.+... ..|. .|+ ..+|..|...|.+.|++++|.++.+...
T Consensus 433 ~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 433 EEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 54322 1221 122 2345556666666666666666655554
No 77
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=1.5e-06 Score=77.18 Aligned_cols=116 Identities=11% Similarity=0.087 Sum_probs=70.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHH-HHHHHHhcCCHHH
Q 010215 391 HGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTL-VIHGLCRANKCEW 469 (515)
Q Consensus 391 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~-li~~~~~~g~~~~ 469 (515)
..++++.+-.+..+..-- ...|... ..+..+.+..|++.+|. ++|-.+.. -.+ .|..+|.. +.++|.+.|+++.
T Consensus 372 ~~qFddVl~YlnSi~sYF-~NdD~Fn-~N~AQAk~atgny~eaE-elf~~is~-~~i-kn~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 372 SFQFDDVLTYLNSIESYF-TNDDDFN-LNLAQAKLATGNYVEAE-ELFIRISG-PEI-KNKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHh-cCcchhh-hHHHHHHHHhcChHHHH-HHHhhhcC-hhh-hhhHHHHHHHHHHHHhcCCchH
Confidence 334555555555544422 1222222 23566777888888887 77766633 122 35566654 5678889999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHh
Q 010215 470 AYLLFKEMIGHDITPRYQTCRL-ILDEVKQKHMYDAAEKIEAVMKK 514 (515)
Q Consensus 470 A~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~m~~ 514 (515)
|++++-++ +-+.+..+.-. +.+-|.+.+.+--|-+.|+.+.+
T Consensus 447 AW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 447 AWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 98887665 33334433333 34467888888888888887764
No 78
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=1.8e-07 Score=80.88 Aligned_cols=286 Identities=14% Similarity=0.117 Sum_probs=160.7
Q ss_pred HHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH-HHHHHHHcC
Q 010215 139 MMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNL-LLDTLCKEG 217 (515)
Q Consensus 139 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-ll~~~~~~~ 217 (515)
+.+.-+.+..++++|++++..-.++++.+...+..+..+|....++..|-..++++-.. .|...-|.. -...+.+.+
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhc
Confidence 33334455566777777777666666666666666677777777777777777766542 344443322 233444556
Q ss_pred CHHHHHHHHHHhhcCCCCChhhHHHHHH--HHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHH
Q 010215 218 KVELARSVFLELKSCIPPNAHTFNIFIH--GWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELL 295 (515)
Q Consensus 218 ~~~~a~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 295 (515)
.+.+|+++...|... ++...-..-+. .....+++..+..++++....| +..+.+...-...+.|++++|++-|
T Consensus 93 i~ADALrV~~~~~D~--~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN--PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred ccHHHHHHHHHhcCC--HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHH
Confidence 666666666665432 22111111111 2234566666777776665433 3444444444455667777777777
Q ss_pred HHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------------CCHH--------HHHHHHH---
Q 010215 296 DEMQA-QGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSK-------------PDSR--------FFNCLIY--- 350 (515)
Q Consensus 296 ~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-------------~~~~--------~~~~li~--- 350 (515)
+...+ .|..| ...|+..+. ..+.|+++.|++...++.++|+. ||+. .-++++.
T Consensus 168 qaAlqvsGyqp-llAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 168 QAALQVSGYQP-LLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHHhhcCCCc-hhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 66555 34443 345554443 33556677777777776665532 1111 1123332
Q ss_pred ----HHHhcCCHHHHHHHHHhhchh-CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHH
Q 010215 351 ----TLGRASRVQEAVYVYQVEMPE-NGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCF 425 (515)
Q Consensus 351 ----~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~ 425 (515)
.+.+.|+++.|.+.+. .|.- .....|++|...+.-.= ..+++.+..+-+.-+.... +-...||..++-.||
T Consensus 246 LKaAIeyq~~n~eAA~eaLt-DmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n--PfP~ETFANlLllyC 321 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALT-DMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN--PFPPETFANLLLLYC 321 (459)
T ss_pred hhhhhhhhcccHHHHHHHhh-cCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC--CCChHHHHHHHHHHh
Confidence 3456788888888877 6643 22345666666553322 2345555555555555544 234568888888888
Q ss_pred hcCChHHHHHHHH
Q 010215 426 KTGKTDECLSQLL 438 (515)
Q Consensus 426 ~~g~~~~A~~~~~ 438 (515)
+..-++-|. .++
T Consensus 322 KNeyf~lAA-DvL 333 (459)
T KOG4340|consen 322 KNEYFDLAA-DVL 333 (459)
T ss_pred hhHHHhHHH-HHH
Confidence 888777776 554
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.15 E-value=8e-08 Score=88.66 Aligned_cols=205 Identities=12% Similarity=0.007 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010215 134 SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTL 213 (515)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 213 (515)
...|..+...|.+.|+.++|...|++..+.++.+..++..+...+...|++++|++.|++..+.. +-+..++..+..++
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l 142 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 45677888888899999999999999988888888888888899999999999999999988743 23567777888888
Q ss_pred HHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHH
Q 010215 214 CKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYE 293 (515)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 293 (515)
...|++++|.+.|+......|.+.. .......+...++.++|...|++..... .|+. |.. .......|+.+++ +
T Consensus 143 ~~~g~~~eA~~~~~~al~~~P~~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~--~~~-~~~~~~lg~~~~~-~ 216 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDDPNDPY-RALWLYLAESKLDPKQAKENLKQRYEKL-DKEQ--WGW-NIVEFYLGKISEE-T 216 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHccCCHHHHHHHHHHHHhhC-Cccc--cHH-HHHHHHccCCCHH-H
Confidence 8889999999999885444444432 2222233445678899999887655432 2332 221 2223335665544 3
Q ss_pred HHHHHHHCC---C--C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 010215 294 LLDEMQAQG---C--P-PNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFN 346 (515)
Q Consensus 294 ~~~~m~~~g---~--~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 346 (515)
.+..+.+.. . . ....+|..+...+.+.|++++|...|++..+.+ ++|..-+.
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~ 274 (296)
T PRK11189 217 LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHR 274 (296)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHH
Confidence 444444321 1 1 123578888888888999999999998888765 34544333
No 80
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.14 E-value=8.6e-07 Score=84.87 Aligned_cols=310 Identities=10% Similarity=-0.023 Sum_probs=170.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHH
Q 010215 165 IVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGL-EKNT-ETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNI 242 (515)
Q Consensus 165 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 242 (515)
|...-.+..+...+...|+.+++.+.+....+... .++. .........+...|++++|.+.+++.....|.+...+..
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~ 82 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL 82 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 44455566666777777878777766666554321 1222 122222335567788999988888865556666655553
Q ss_pred ---HHHHHHccCChhHHHHHHHHHHhCCCCcc-HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010215 243 ---FIHGWCKINRVDEAQWTIQEMKGHGCHPC-VISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLA 318 (515)
Q Consensus 243 ---li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 318 (515)
........+..+.+.+.++... +..|+ ......+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~ 159 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWA--PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLE 159 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccC--cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 2222222444555555554411 11222 3344455667788888888988888888764 334667777788888
Q ss_pred hcCCHHHHHHHHHHHHhcCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHhhchhCCC-CCCHHHH-H--HHHHHHHhC
Q 010215 319 KSGDFEEAIRITEKMKIVGS-KPDS--RFFNCLIYTLGRASRVQEAVYVYQVEMPENGV-APDTSTF-N--TMITMFSHH 391 (515)
Q Consensus 319 ~~g~~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~ 391 (515)
..|++++|...+++..+... .++. ..|..+...+...|++++|..+++ ....... .+..... + .++.-+...
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYD-THIAPSAESDPALDLLDAASLLWRLELA 238 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHH-HHhccccCCChHHHHhhHHHHHHHHHhc
Confidence 88888888888888776432 1222 345567777888888888888888 5432211 1111111 1 222233334
Q ss_pred CCHHHHHHH--HHHH-HhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCC---C----CCHHHHHHHHHHH
Q 010215 392 GHHEKAFHV--LEEM-NKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHL---S----LDITTYTLVIHGL 461 (515)
Q Consensus 392 g~~~~A~~~--~~~m-~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~----p~~~~~~~li~~~ 461 (515)
|....+.++ +... ..................++...|+.++|. .+++.+.....- . ..+.......-++
T Consensus 239 g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~-~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~ 317 (355)
T cd05804 239 GHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALD-KLLAALKGRASSADDNKQPARDVGLPLAEALYA 317 (355)
T ss_pred CCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHhccCchhhhHHhhhHHHHHHHHH
Confidence 433333222 1111 111000011112224555667778888877 777776552111 0 0111222223345
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 010215 462 CRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 462 ~~~g~~~~A~~~~~~m~~ 479 (515)
...|+.++|.+.+.+...
T Consensus 318 ~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 318 FAEGNYATALELLGPVRD 335 (355)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 577888888888777654
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.12 E-value=1.3e-07 Score=78.98 Aligned_cols=210 Identities=13% Similarity=0.123 Sum_probs=156.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 010215 274 SYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLG 353 (515)
Q Consensus 274 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 353 (515)
+..-|.-+|.+.|++..|.+-+++.++.. +.+..++..+...|.+.|..+.|.+.|++..+.. +.+..+.|....-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 34556677888888888888888888774 2256778888888888888888888888888764 556677888888888
Q ss_pred hcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHH
Q 010215 354 RASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDEC 433 (515)
Q Consensus 354 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A 433 (515)
..|++++|...|+..+......--..+|..+.-+..+.|+.+.|.+.|++..+.. +-...+...+.....+.|++-.|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHHHhcccchHH
Confidence 8889999988888555443333345678888888888899999999998888854 33355677777888888888888
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010215 434 LSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLI 492 (515)
Q Consensus 434 ~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 492 (515)
. .+++..... + .++..+.-.-|..-.+.|+.+.|.++=..+.+ ..|...-+..+
T Consensus 193 r-~~~~~~~~~-~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s~e~q~f 246 (250)
T COG3063 193 R-LYLERYQQR-G-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYSEEYQTF 246 (250)
T ss_pred H-HHHHHHHhc-c-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHHhH
Confidence 7 777777663 2 37777777777778888888888887776664 45665555443
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.12 E-value=1.5e-07 Score=78.70 Aligned_cols=198 Identities=13% Similarity=0.070 Sum_probs=153.5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 010215 136 IYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCK 215 (515)
Q Consensus 136 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 215 (515)
+...|.-.|...|+...|.+-+++..+.++.+..++..+...|-+.|..+.|.+.|++..+.. +-+-...|...-.+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 344566678888899999999988888888888888888888888888888888888888753 3356777888888888
Q ss_pred cCCHHHHHHHHHH-hhc-CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHH
Q 010215 216 EGKVELARSVFLE-LKS-CIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYE 293 (515)
Q Consensus 216 ~~~~~~a~~~~~~-~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 293 (515)
.|++++|.+.|++ +.. ..+.-..+|..+.-+..+.|+.+.|...|++..+.. +-...+.-.+.......|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 8888888888888 333 344556778888888888888888888888887764 2234556677778888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010215 294 LLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIV 336 (515)
Q Consensus 294 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 336 (515)
+++.....+. ++....-..|..-...|+-+.+-+.=.++.+.
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 8888877765 77777777788878888888777776666554
No 83
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.11 E-value=4e-06 Score=80.26 Aligned_cols=301 Identities=14% Similarity=0.174 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----------------C------CHHHHHHHHH
Q 010215 135 EIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGA----------------G------QWEDAVRTFD 192 (515)
Q Consensus 135 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------g------~~~~A~~~~~ 192 (515)
..|++|.+.|.+.|.+++|.++|++....- .+..-+..+...|++- | +++-.+..|+
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v-~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTV-MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhh-eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 578999999999999999999999876532 2222222223333321 1 1222333344
Q ss_pred HHhhCCC-----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC------ChhhHHHHHHHHHccCChhH
Q 010215 193 ELGTFGL-----------EKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPP------NAHTFNIFIHGWCKINRVDE 255 (515)
Q Consensus 193 ~m~~~g~-----------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~ 255 (515)
.+...+. +.++.+|..-+.. ..|+..+-...|.+....+.| -...|..+.+.|-..|+++.
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~ 405 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDD 405 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence 4433210 1233333333322 245566667777764333222 23468889999999999999
Q ss_pred HHHHHHHHHhCCCCcc---HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-----------C------CHHHHHHHHH
Q 010215 256 AQWTIQEMKGHGCHPC---VISYSTIIQSYCRQYNFSKVYELLDEMQAQGCP-----------P------NVVTYTTVMS 315 (515)
Q Consensus 256 A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----------~------~~~~~~~li~ 315 (515)
|..+|++..+...+.- ..+|......=.+..+++.|+++.+.....--. + +...|...++
T Consensus 406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D 485 (835)
T KOG2047|consen 406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD 485 (835)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence 9999999887543221 345555555556778888999888776532111 1 2234555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCH-HHHHHHHHHHHh---C
Q 010215 316 YLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDT-STFNTMITMFSH---H 391 (515)
Q Consensus 316 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~---~ 391 (515)
.--..|-++....+++.+....+. ++...-.....+-...-++++.++|++.+. .-..|++ ..|+..+.-+.+ .
T Consensus 486 leEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~-LFk~p~v~diW~tYLtkfi~rygg 563 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGIS-LFKWPNVYDIWNTYLTKFIKRYGG 563 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCc-cCCCccHHHHHHHHHHHHHHHhcC
Confidence 556678889999999999876543 222222222233455668899999983332 2223443 367766655543 3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHH--HHhcCChHHHHHHHHHHHHH
Q 010215 392 GHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKS--CFKTGKTDECLSQLLDDMVN 443 (515)
Q Consensus 392 g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~--~~~~g~~~~A~~~~~~~~~~ 443 (515)
..++.|..+|++..+ | ++|...-+.-|+-+ =-+.|....|+ .++++...
T Consensus 564 ~klEraRdLFEqaL~-~-Cpp~~aKtiyLlYA~lEEe~GLar~am-siyerat~ 614 (835)
T KOG2047|consen 564 TKLERARDLFEQALD-G-CPPEHAKTIYLLYAKLEEEHGLARHAM-SIYERATS 614 (835)
T ss_pred CCHHHHHHHHHHHHh-c-CCHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHh
Confidence 468999999999998 5 67765443333322 22457777777 77766544
No 84
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.07 E-value=5.6e-06 Score=79.45 Aligned_cols=403 Identities=12% Similarity=0.076 Sum_probs=240.4
Q ss_pred CCcCCHHHHHHHHHHhhhCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHH
Q 010215 95 AIQPSHYLVNKLIHRFKDDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKV 174 (515)
Q Consensus 95 g~~p~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 174 (515)
+-+++....-.+.-.|-++.++|....+.+.+ +-..+.+.|..+.-.+-...++++|++.|......++.+...+.-+
T Consensus 38 ~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr--~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDl 115 (700)
T KOG1156|consen 38 PEHGESLAMKGLTLNCLGKKEEAYELVRLGLR--NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDL 115 (700)
T ss_pred CccchhHHhccchhhcccchHHHHHHHHHHhc--cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 55667777777777777888888888877752 3344667788887777778889999999998888777777776666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--CCCChhhHHHHH------HH
Q 010215 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSC--IPPNAHTFNIFI------HG 246 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~li------~~ 246 (515)
.-.-++.|+++-....-..+.+.. +-....|..+..++.-.|+...|..+.+..... ..|+...+.-.. ..
T Consensus 116 slLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i 194 (700)
T KOG1156|consen 116 SLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQI 194 (700)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 556666667666666666655531 224455666666667777777777777764332 234544443322 23
Q ss_pred HHccCChhHHHHHHHHHHhCCCCccHh-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHH
Q 010215 247 WCKINRVDEAQWTIQEMKGHGCHPCVI-SYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLA-KSGDFE 324 (515)
Q Consensus 247 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~ 324 (515)
..+.|..++|.+.+..-... ..|-. .-..-...+.+.+++++|..++..+... .||...|...+..+. +-.+..
T Consensus 195 ~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~ 270 (700)
T KOG1156|consen 195 LIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDML 270 (700)
T ss_pred HHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhH
Confidence 34456666666655544332 11222 2233445566677777777777777665 455544444333322 222222
Q ss_pred HHH-HHHHH----------------------------------HHhcCCCCCHHHHHHHHHHHHhcCCH---HH-HHHHH
Q 010215 325 EAI-RITEK----------------------------------MKIVGSKPDSRFFNCLIYTLGRASRV---QE-AVYVY 365 (515)
Q Consensus 325 ~a~-~~~~~----------------------------------~~~~~~~~~~~~~~~li~~~~~~g~~---~~-A~~~~ 365 (515)
++. .+|.. ..+.|+++ ++..+...|-.-... ++ +..+.
T Consensus 271 ~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~ 347 (700)
T KOG1156|consen 271 EALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQ 347 (700)
T ss_pred HHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHH
Confidence 222 33333 33333322 122222222211111 11 11111
Q ss_pred HhhchhCC----------CCCCHHHHH--HHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCH-HhHHHHHHHHHhcCChHH
Q 010215 366 QVEMPENG----------VAPDTSTFN--TMITMFSHHGHHEKAFHVLEEMNKLEHCKPNV-QTFHPLLKSCFKTGKTDE 432 (515)
Q Consensus 366 ~~~~~~~~----------~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~g~~~~ 432 (515)
. .+...| -+|....|. .++..+-+.|+++.|..+++..+.+ .|+. ..|..-.+.+.+.|++++
T Consensus 348 ~-~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH---TPTliEly~~KaRI~kH~G~l~e 423 (700)
T KOG1156|consen 348 H-SLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH---TPTLIELYLVKARIFKHAGLLDE 423 (700)
T ss_pred h-hcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc---CchHHHHHHHHHHHHHhcCChHH
Confidence 1 111111 145555444 5677888999999999999999884 4664 456666688899999999
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--C----HHHHHHHH--HHHHhcCCHHH
Q 010215 433 CLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITP--R----YQTCRLIL--DEVKQKHMYDA 504 (515)
Q Consensus 433 A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~----~~~~~~ll--~~~~~~g~~~~ 504 (515)
|. ..+++..+ .. .+|...-.--+.-..++.+.++|.++.....+.|... + .-.|..+= .+|.+.|++..
T Consensus 424 Aa-~~l~ea~e-lD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ 500 (700)
T KOG1156|consen 424 AA-AWLDEAQE-LD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGL 500 (700)
T ss_pred HH-HHHHHHHh-cc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHH
Confidence 99 88888876 22 2454443355666778999999999998887766411 1 12344443 35778888888
Q ss_pred HHHHHHHHHh
Q 010215 505 AEKIEAVMKK 514 (515)
Q Consensus 505 a~~~~~~m~~ 514 (515)
|.+=|..+.+
T Consensus 501 ALKkfh~i~k 510 (700)
T KOG1156|consen 501 ALKKFHEIEK 510 (700)
T ss_pred HHHHHhhHHH
Confidence 8887766543
No 85
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.05 E-value=3.8e-08 Score=89.41 Aligned_cols=253 Identities=16% Similarity=0.213 Sum_probs=161.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChh
Q 010215 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVD 254 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 254 (515)
++-+.-.|++..++.-.+ .....-..+......+.+++...|+.+.+ ..++....+|.......+...+...++-+
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSSSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTSSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCCChhHHHHHHHHHHHhCccchH
Confidence 455666788888886655 22222122344555677888888886643 34554444667666666655554444555
Q ss_pred HHHHHHHHHHhCCCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010215 255 EAQWTIQEMKGHGCHP-CVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKM 333 (515)
Q Consensus 255 ~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 333 (515)
.+..-+++....+..+ +..........+...|++++|++++... .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555444333222 2222223334556678899998887642 35677778888999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 010215 334 KIVGSKPDSRFFNCLIYTL----GRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEH 409 (515)
Q Consensus 334 ~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 409 (515)
.+. ..|. +...+..++ ...+.+.+|..+|+ ++.+. ..+++.+.+.+..++...|++++|.+++.+..+.+
T Consensus 158 ~~~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~-El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~- 231 (290)
T PF04733_consen 158 QQI--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFE-ELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD- 231 (290)
T ss_dssp HCC--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHH-HHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--
T ss_pred Hhc--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHH-HHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-
Confidence 875 3343 333344443 33456899999999 76553 45788889999999999999999999999987754
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHc
Q 010215 410 CKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNK 444 (515)
Q Consensus 410 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 444 (515)
+-+..+...++......|+..++.++++.++...
T Consensus 232 -~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 232 -PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp -CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred -cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 4456778888888888898855555888888763
No 86
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.98 E-value=5.1e-06 Score=90.12 Aligned_cols=337 Identities=10% Similarity=0.025 Sum_probs=202.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC-------CC--hhhHHHHHH
Q 010215 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIP-------PN--AHTFNIFIH 245 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~--~~~~~~li~ 245 (515)
.......|+++.+..++..+.......+..........+...|+++++..++........ +. ......+..
T Consensus 381 a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 460 (903)
T PRK04841 381 GWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQ 460 (903)
T ss_pred HHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHH
Confidence 344556777777777776653221112222333444556678899999988877432211 11 122233345
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCcc----HhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCCHHHHHHHHHH
Q 010215 246 GWCKINRVDEAQWTIQEMKGHGCHPC----VISYSTIIQSYCRQYNFSKVYELLDEMQAQ----GC-PPNVVTYTTVMSY 316 (515)
Q Consensus 246 ~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~~li~~ 316 (515)
.+...|++++|...+++....-...+ ....+.+...+...|++++|...+++.... |- .....++..+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 56678999999999998765311111 134456666778899999999998887642 11 1112345556677
Q ss_pred HHhcCCHHHHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHhhchhC--CCCC--CHHHHHHHH
Q 010215 317 LAKSGDFEEAIRITEKMKIV----GSK--P-DSRFFNCLIYTLGRASRVQEAVYVYQVEMPEN--GVAP--DTSTFNTMI 385 (515)
Q Consensus 317 ~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~--~~~~~~~li 385 (515)
+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+. ..... ...+ ....+..+.
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~-~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCAR-KGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHH-HhHHhhhccCchHHHHHHHHHH
Confidence 78899999999988876552 211 1 22334455566777899999988887 43221 1112 233445566
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhH-----HHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC---HHHHHHH
Q 010215 386 TMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTF-----HPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD---ITTYTLV 457 (515)
Q Consensus 386 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~-----~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~---~~~~~~l 457 (515)
..+...|++++|.+.+.+.............+ ...+..+...|+.+.|. ..+...... ..... ...+..+
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~-~~l~~~~~~-~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAA-NWLRQAPKP-EFANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHH-HHHHhcCCC-CCccchhHHHHHHHH
Confidence 67788999999999988875521011111111 11123345578888877 666554331 11111 1113456
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 458 IHGLCRANKCEWAYLLFKEMIGH----DITPRY-QTCRLILDEVKQKHMYDAAEKIEAVMKK 514 (515)
Q Consensus 458 i~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 514 (515)
..++...|++++|...+++.... |..++. .+...+..++...|+.++|.+.+....+
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77788899999999999887652 323222 2444455567889999999998887654
No 87
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=1.1e-05 Score=81.07 Aligned_cols=265 Identities=12% Similarity=0.114 Sum_probs=144.5
Q ss_pred CCHHHHHHHHHHhhhCHHHHHHHHHHhcc-CCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCC---CCHHHHHH
Q 010215 98 PSHYLVNKLIHRFKDDWKSALGIFRWAGS-CPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHI---VTLNTIAK 173 (515)
Q Consensus 98 p~~~~~~~ll~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~ 173 (515)
.|...|..+|..-. ..-.++.++... ...-..|+.-.+..+.++...+-..+-+++++++.-.+. .+.+.-+.
T Consensus 950 ~D~~LW~~VL~e~n---~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnL 1026 (1666)
T KOG0985|consen 950 SDPDLWAKVLNEEN---PYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNL 1026 (1666)
T ss_pred cChHHHHHHHhccC---hHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhh
Confidence 46667776664221 112233444321 112234777888888999999999999999999865333 23333333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCh
Q 010215 174 VMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRV 253 (515)
Q Consensus 174 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 253 (515)
|+-...+ -+..+..+..+++...+ .|+ +...+...+-+++|..+|+... .+....+.||. ..+.+
T Consensus 1027 LiLtAik-ad~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf~----~n~~A~~VLie---~i~~l 1091 (1666)
T KOG0985|consen 1027 LILTAIK-ADRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIFKKFD----MNVSAIQVLIE---NIGSL 1091 (1666)
T ss_pred HHHHHhh-cChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHHHHhc----ccHHHHHHHHH---HhhhH
Confidence 3333333 34456666666665543 222 3334555566677777776532 23444444443 23455
Q ss_pred hHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010215 254 DEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKM 333 (515)
Q Consensus 254 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 333 (515)
+.|.+.-++.- ....|..+..+-.+.|...+|++-|-+.. |+..|..+++.+.+.|.+++-.+.+...
T Consensus 1092 dRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~Ma 1159 (1666)
T KOG0985|consen 1092 DRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMA 1159 (1666)
T ss_pred HHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 55555444432 34456666666666666666665543221 4556666666666666666666666655
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 010215 334 KIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLE 402 (515)
Q Consensus 334 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 402 (515)
++...+|.. -+.||-+|++.++..+.++.+. .||......+.+-|...|.++.|.-+|.
T Consensus 1160 Rkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~--------gpN~A~i~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1160 RKKVREPYI--DSELIFAYAKTNRLTELEEFIA--------GPNVANIQQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred HHhhcCccc--hHHHHHHHHHhchHHHHHHHhc--------CCCchhHHHHhHHHhhhhhhHHHHHHHH
Confidence 555444433 2456666666666665555543 2444444455555555555555444443
No 88
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=1.3e-05 Score=71.35 Aligned_cols=377 Identities=12% Similarity=0.051 Sum_probs=220.2
Q ss_pred hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010215 112 DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTF 191 (515)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 191 (515)
++...|..++++.. ..+-.-...+-.-+...+.+.|++++|...+.-+.+.+..+...-..|..++.-.|.+.+|..+-
T Consensus 36 rDytGAislLefk~-~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~ 114 (557)
T KOG3785|consen 36 RDYTGAISLLEFKL-NLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIA 114 (557)
T ss_pred ccchhHHHHHHHhh-ccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHH
Confidence 47778888888764 22222222233334455677899999999998887776666666566667777788888888876
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCcc
Q 010215 192 DELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPC 271 (515)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 271 (515)
.... .++..-..+.....+.++-++-..+++.+... ..---+|.......-.+.+|.+++.+....+ |+
T Consensus 115 ~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~e 183 (557)
T KOG3785|consen 115 EKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PE 183 (557)
T ss_pred hhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hh
Confidence 5532 23444455666666778877777777766542 2233345555555567889999999887653 56
Q ss_pred HhHHHHHHH-HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---------
Q 010215 272 VISYSTIIQ-SYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPD--------- 341 (515)
Q Consensus 272 ~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--------- 341 (515)
....|.-+. +|.+..-++-+.+++.-..+. ++.+..+.+.......+.=+-..|.+-.+.+...+-..-
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rH 262 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRH 262 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHc
Confidence 555555443 456666677788887776665 333445555555444443333344444555554431100
Q ss_pred ----------------------HHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCC------
Q 010215 342 ----------------------SRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGH------ 393 (515)
Q Consensus 342 ----------------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------ 393 (515)
+..--.|+-.|.+.+++++|..+.+ ...- ..|-......+ .++..|+
T Consensus 263 NLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K-dl~P--ttP~EyilKgv--v~aalGQe~gSre 337 (557)
T KOG3785|consen 263 NLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK-DLDP--TTPYEYILKGV--VFAALGQETGSRE 337 (557)
T ss_pred CeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh-hcCC--CChHHHHHHHH--HHHHhhhhcCcHH
Confidence 0011223444667777777777766 4321 12222222222 1222222
Q ss_pred -HHHHHHHHHHHHhCCCCCCCHH-hHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010215 394 -HEKAFHVLEEMNKLEHCKPNVQ-TFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAY 471 (515)
Q Consensus 394 -~~~A~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 471 (515)
..-|.+.|+-.-+.+ ..-|.. --.++...+.-..++++.+ .++..+.. +-...|...|| +..+++..|.+.+|.
T Consensus 338 HlKiAqqffqlVG~Sa-~ecDTIpGRQsmAs~fFL~~qFddVl-~YlnSi~s-YF~NdD~Fn~N-~AQAk~atgny~eaE 413 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESA-LECDTIPGRQSMASYFFLSFQFDDVL-TYLNSIES-YFTNDDDFNLN-LAQAKLATGNYVEAE 413 (557)
T ss_pred HHHHHHHHHHHhcccc-cccccccchHHHHHHHHHHHHHHHHH-HHHHHHHH-HhcCcchhhhH-HHHHHHHhcChHHHH
Confidence 233444454443333 222211 1223344445556677766 67776665 44444554444 778899999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHH
Q 010215 472 LLFKEMIGHDITPRYQTCRLILDEV-KQKHMYDAAEKIEAV 511 (515)
Q Consensus 472 ~~~~~m~~~~~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~ 511 (515)
++|-+.....+ .|..+|.+++.-| .+.|..+.|.+++=.
T Consensus 414 elf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk 453 (557)
T KOG3785|consen 414 ELFIRISGPEI-KNKILYKSMLARCYIRNKKPQLAWDMMLK 453 (557)
T ss_pred HHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHh
Confidence 99988764322 4667888877755 788888888776543
No 89
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=4.6e-05 Score=76.88 Aligned_cols=319 Identities=11% Similarity=0.104 Sum_probs=217.7
Q ss_pred CCHHHHHHHHHHhh--hCHHHHHHHHHHhccC-CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHH
Q 010215 98 PSHYLVNKLIHRFK--DDWKSALGIFRWAGSC-PGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKV 174 (515)
Q Consensus 98 p~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 174 (515)
.|+...+...+++- +-+.+-.++++.+... ..+.-+...-|.|+-.-.|. +..+..+..+++..-+.++ .
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~~---i--- 1054 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAPD---I--- 1054 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCchh---H---
Confidence 46666666777764 4567788899988733 34444555556665544444 3344555555554433332 2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChh
Q 010215 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVD 254 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 254 (515)
......++-+++|..+|++. ..+....+.|+. .-+..+.|.+.-++.. .+.+|..+..+-.+.|.+.
T Consensus 1055 a~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n-----~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCN-----EPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhC-----ChHHHHHHHHHHHhcCchH
Confidence 44566788899999999875 345666666654 3466777777666653 4678999999999999999
Q ss_pred HHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010215 255 EAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMK 334 (515)
Q Consensus 255 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 334 (515)
+|.+-|-+.. |+..|.-+++...+.|.|++-.+++....+..-.|... +.+|-+|++.+++.+.++++.
T Consensus 1122 dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~--- 1190 (1666)
T KOG0985|consen 1122 DAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA--- 1190 (1666)
T ss_pred HHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc---
Confidence 9988775543 67789999999999999999999998888776666544 578889999999887666542
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCH
Q 010215 335 IVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNV 414 (515)
Q Consensus 335 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 414 (515)
-|+......+.+-|...|.++.|.-+|. ++..|..+...+...|++..|.+.-++. .+.
T Consensus 1191 ----gpN~A~i~~vGdrcf~~~~y~aAkl~y~----------~vSN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ 1249 (1666)
T KOG0985|consen 1191 ----GPNVANIQQVGDRCFEEKMYEAAKLLYS----------NVSNFAKLASTLVYLGEYQGAVDAARKA-------NST 1249 (1666)
T ss_pred ----CCCchhHHHHhHHHhhhhhhHHHHHHHH----------HhhhHHHHHHHHHHHHHHHHHHHHhhhc-------cch
Confidence 5777777778888888888998888887 4556888888888888888887766553 345
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010215 415 QTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLS--LDITTYTLVIHGLCRANKCEWAYLLFKEM 477 (515)
Q Consensus 415 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m 477 (515)
.||..+-.+|...+.+.-|- | +|+. ....-..-++.-|-..|-+++-+.+++..
T Consensus 1250 ktWK~VcfaCvd~~EFrlAQ------i---CGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1250 KTWKEVCFACVDKEEFRLAQ------I---CGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred hHHHHHHHHHhchhhhhHHH------h---cCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 57777777776665554331 1 2221 12233444555555555555555554443
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.94 E-value=1.6e-05 Score=70.52 Aligned_cols=301 Identities=13% Similarity=0.078 Sum_probs=195.1
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH-HHHH
Q 010215 132 HSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETM-NLLL 210 (515)
Q Consensus 132 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~ll 210 (515)
.++.-.--+.+.+...|++.+|+.-|....+.++.+..++..-...|...|+-.-|+.=+.+..+ .+||...- ..-.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg 113 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhc
Confidence 44555556778888899999999999999999999999988888899999999999998988887 47775432 2234
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCC---hhhH------------HHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHH
Q 010215 211 DTLCKEGKVELARSVFLELKSCIPPN---AHTF------------NIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISY 275 (515)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~------------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 275 (515)
..+.+.|.++.|..-|+.+....+.+ ..++ ...+..+.-.|+...|+.....+.+.. +-|...|
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~ 192 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLR 192 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHH
Confidence 46779999999999999854332211 1111 223344556678888888888877653 3466667
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH----H---
Q 010215 276 STIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNC----L--- 348 (515)
Q Consensus 276 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----l--- 348 (515)
..-..+|...|++..|+.=++...+.... +..++--+-..+...|+.+.++...++.++. .||....-. |
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKV 269 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHH
Confidence 77778888888888887766666554322 4555556666777788888888877777764 455432211 1
Q ss_pred H------HHHHhcCCHHHHHHHHHhhchhCCCCCCHH---HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC-HHhHH
Q 010215 349 I------YTLGRASRVQEAVYVYQVEMPENGVAPDTS---TFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPN-VQTFH 418 (515)
Q Consensus 349 i------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~ 418 (515)
. ......++|.++.+-.+ ...+........ .+..+-.++...|++.+|++...+..+ +.|| ..++.
T Consensus 270 ~K~les~e~~ie~~~~t~cle~ge-~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~---~d~~dv~~l~ 345 (504)
T KOG0624|consen 270 VKSLESAEQAIEEKHWTECLEAGE-KVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD---IDPDDVQVLC 345 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHH-HHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh---cCchHHHHHH
Confidence 1 11233455555555555 322222111112 223334455556677777777777666 3344 55666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHH
Q 010215 419 PLLKSCFKTGKTDECLSQLLDDMVN 443 (515)
Q Consensus 419 ~ll~~~~~~g~~~~A~~~~~~~~~~ 443 (515)
--..+|.-...++.|+ .=++...+
T Consensus 346 dRAeA~l~dE~YD~AI-~dye~A~e 369 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAI-HDYEKALE 369 (504)
T ss_pred HHHHHHhhhHHHHHHH-HHHHHHHh
Confidence 6666666666777776 55655554
No 91
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.92 E-value=4.2e-06 Score=81.21 Aligned_cols=192 Identities=19% Similarity=0.220 Sum_probs=116.5
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 010215 281 SYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQE 360 (515)
Q Consensus 281 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 360 (515)
+.....+|.+|+.+++.+++... -..-|..+..-|+..|+++.|.++|.+.- .++-.|.+|.+.|+|++
T Consensus 741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 33445667777777776665532 23345666677777788888877776532 24456777888888888
Q ss_pred HHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHH
Q 010215 361 AVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDD 440 (515)
Q Consensus 361 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 440 (515)
|.++-. . -.|.......|-+-..-+-.+|++.+|.+++-.+ | .|+. .+..|-+.|..+.-+ ++..+
T Consensus 810 a~kla~-e--~~~~e~t~~~yiakaedldehgkf~eaeqlyiti---~--~p~~-----aiqmydk~~~~ddmi-rlv~k 875 (1636)
T KOG3616|consen 810 AFKLAE-E--CHGPEATISLYIAKAEDLDEHGKFAEAEQLYITI---G--EPDK-----AIQMYDKHGLDDDMI-RLVEK 875 (1636)
T ss_pred HHHHHH-H--hcCchhHHHHHHHhHHhHHhhcchhhhhheeEEc---c--CchH-----HHHHHHhhCcchHHH-HHHHH
Confidence 877765 2 2333445556666666666777777777766543 2 3543 345566667666655 44433
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010215 441 MVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEA 510 (515)
Q Consensus 441 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 510 (515)
-. | ..-..|-..+..-|-..|+.++|.+.|-+.. -|.+-++.|..++.|++|-++-+
T Consensus 876 ~h---~-d~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 876 HH---G-DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred hC---h-hhhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 21 1 1112344455666677788877777665552 36666677777777777766543
No 92
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=1.8e-06 Score=74.91 Aligned_cols=324 Identities=14% Similarity=0.109 Sum_probs=211.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCh
Q 010215 174 VMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRV 253 (515)
Q Consensus 174 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 253 (515)
.+..+.+..+++.|++++..-.+.. +.+......|..+|....++..|-..++++....|.-..---.-...+.+.+.+
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ 94 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIY 94 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhccc
Confidence 3566788899999999998877753 337778888889999999999999999998765544333333455677889999
Q ss_pred hHHHHHHHHHHhCCCCccHhHHHHHHHH--HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010215 254 DEAQWTIQEMKGHGCHPCVISYSTIIQS--YCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITE 331 (515)
Q Consensus 254 ~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 331 (515)
..|+++...|.+. ++...-..-+.+ ....+++..+..+.++....| +..+.+...-...+.|+++.|.+-|+
T Consensus 95 ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 95 ADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHH
Confidence 9999999998763 333222222222 345778888888888766433 33444444445568999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCC-------------CCHH---------------HHHH
Q 010215 332 KMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVA-------------PDTS---------------TFNT 383 (515)
Q Consensus 332 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~~~~---------------~~~~ 383 (515)
...+.+--.....|+..+..| +.|+++.|.+... ++.++|++ ||+. .+|.
T Consensus 169 aAlqvsGyqpllAYniALaHy-~~~qyasALk~iS-EIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNL 246 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLALAHY-SSRQYASALKHIS-EIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNL 246 (459)
T ss_pred HHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHH-HHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhh
Confidence 998865445556777666544 6789999999888 77666643 1211 1232
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 010215 384 MITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCR 463 (515)
Q Consensus 384 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 463 (515)
-...+.+.|+++.|.+.+..|.-......|++|...+.-.-. .+++.+.. +-+.-+....+ ...+||..++-.||+
T Consensus 247 KaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~-~KLqFLL~~nP--fP~ETFANlLllyCK 322 (459)
T KOG4340|consen 247 KAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGF-EKLQFLLQQNP--FPPETFANLLLLYCK 322 (459)
T ss_pred hhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccH-HHHHHHHhcCC--CChHHHHHHHHHHhh
Confidence 333456789999999999988655435667778766543222 33344444 33444444223 246789999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHH-HhcCCHHHHHHHHHH
Q 010215 464 ANKCEWAYLLFKEMIGHDIT-PRYQTCRLILDEV-KQKHMYDAAEKIEAV 511 (515)
Q Consensus 464 ~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~-~~~g~~~~a~~~~~~ 511 (515)
..-++-|-.++.+-....+. .+...| -|+.++ .-.-..+++.+-++.
T Consensus 323 Neyf~lAADvLAEn~~lTyk~L~~Yly-~LLdaLIt~qT~pEea~KKL~~ 371 (459)
T KOG4340|consen 323 NEYFDLAADVLAENAHLTYKFLTPYLY-DLLDALITCQTAPEEAFKKLDG 371 (459)
T ss_pred hHHHhHHHHHHhhCcchhHHHhhHHHH-HHHHHHHhCCCCHHHHHHHHHH
Confidence 99999988887654322111 122223 344444 334455555554443
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.92 E-value=9.2e-08 Score=86.95 Aligned_cols=247 Identities=17% Similarity=0.163 Sum_probs=111.4
Q ss_pred HHHcCCHHHHHHHHHHhhcC-CCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHH
Q 010215 213 LCKEGKVELARSVFLELKSC-IPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKV 291 (515)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 291 (515)
+.-.|++..++.-.+ .... .+.+......+.+++...|+++.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 334566666654443 2211 1112333444555666666554332 3332222 44555444444333332333444
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhch
Q 010215 292 YELLDEMQAQGCPP-NVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMP 370 (515)
Q Consensus 292 ~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 370 (515)
+.-+++....+..+ +..........+...|++++|++++... .+.......+..|.+.++++.|.+.++ .|.
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~-~~~ 158 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELK-NMQ 158 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHH-HHH
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHH-HHH
Confidence 44333332222221 2222222223344456666666655431 344455555666666666666666666 555
Q ss_pred hCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCC
Q 010215 371 ENGVAPDTSTFNTMITMFSH----HGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHH 446 (515)
Q Consensus 371 ~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 446 (515)
+. ..|. +...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|. .++.+.....
T Consensus 159 ~~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe-~~L~~al~~~- 231 (290)
T PF04733_consen 159 QI--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAE-ELLEEALEKD- 231 (290)
T ss_dssp CC--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHH-HHHHHHCCC--
T ss_pred hc--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHhc-
Confidence 43 2232 22223333322 23466666666666553 2456666666666666666666666 5555554311
Q ss_pred CCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 010215 447 LSLDITTYTLVIHGLCRANKC-EWAYLLFKEMIG 479 (515)
Q Consensus 447 ~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 479 (515)
+-++.+...++.+....|+. +.+.+.+.++..
T Consensus 232 -~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 232 -PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp -CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred -cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 11344455555555555555 445556666553
No 94
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.87 E-value=2.4e-05 Score=69.47 Aligned_cols=96 Identities=13% Similarity=0.074 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCh-hhHHHHHH
Q 010215 168 LNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEK-NTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNA-HTFNIFIH 245 (515)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~li~ 245 (515)
..-...+...+...|++..|+.-|....+- .| +-.++-.-...|...|+-..|+.-+.++.+ .+||- ..--.-..
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle-lKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE-LKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh-cCccHHHHHHHhch
Confidence 333445566677777777777777666542 22 222223334456666666666666666432 23332 22222334
Q ss_pred HHHccCChhHHHHHHHHHHhC
Q 010215 246 GWCKINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 246 ~~~~~g~~~~A~~~~~~~~~~ 266 (515)
.+.+.|.+++|..-|+...+.
T Consensus 115 vllK~Gele~A~~DF~~vl~~ 135 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQH 135 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhc
Confidence 566677777777777777665
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=4.2e-05 Score=72.10 Aligned_cols=368 Identities=13% Similarity=0.137 Sum_probs=222.3
Q ss_pred hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010215 112 DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTF 191 (515)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 191 (515)
++.+.|...|-...... ++|...|+.-...|++.|++++|.+=-.+-.+.+|.-...|.....++.-.|++++|+.-|
T Consensus 16 ~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay 93 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAY 93 (539)
T ss_pred ccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHH
Confidence 68999999999886322 4588899999999999999999999888888878777788999999999999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--hhcCCC--------CChhhHHHHHHHHHcc----------C
Q 010215 192 DELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLE--LKSCIP--------PNAHTFNIFIHGWCKI----------N 251 (515)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~--~~~~~~--------~~~~~~~~li~~~~~~----------g 251 (515)
.+-++.. +-|...++.+..++.... .+.+.|.. +-.+.. .....|..++..+-+. .
T Consensus 94 ~~GL~~d-~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~ 169 (539)
T KOG0548|consen 94 SEGLEKD-PSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDP 169 (539)
T ss_pred HHHhhcC-CchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccH
Confidence 9988753 345667777877772111 01111211 111111 1111222232222111 1
Q ss_pred ChhHHHHHHHHH-----HhCC-------CCc----------------------cHhHHHHHHHHHHhcCChhHHHHHHHH
Q 010215 252 RVDEAQWTIQEM-----KGHG-------CHP----------------------CVISYSTIIQSYCRQYNFSKVYELLDE 297 (515)
Q Consensus 252 ~~~~A~~~~~~~-----~~~~-------~~~----------------------~~~~~~~li~~~~~~g~~~~A~~~~~~ 297 (515)
++..|...+... ...| ..| -..-...+.++..+..+++.|++-+..
T Consensus 170 r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~ 249 (539)
T KOG0548|consen 170 RLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAK 249 (539)
T ss_pred HHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 111121111110 0000 011 011245677777788889999999888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHhhchh
Q 010215 298 MQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPD------SRFFNCLIYTLGRASRVQEAVYVYQVEMPE 371 (515)
Q Consensus 298 m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 371 (515)
..... -+..-++....+|...|.+..+...-....+.|...- ...+..+..+|.+.++++.+...|.+.+.+
T Consensus 250 a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte 327 (539)
T KOG0548|consen 250 ALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTE 327 (539)
T ss_pred HHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhh
Confidence 87764 3555566666778888888777777666665542111 111222334667778888888888733322
Q ss_pred CCCCCCHHH-------------------------HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHh
Q 010215 372 NGVAPDTST-------------------------FNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFK 426 (515)
Q Consensus 372 ~~~~~~~~~-------------------------~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 426 (515)
...|+..+ .-.-...+.+.|++..|+..|.++++.. +-|...|..-..+|.+
T Consensus 328 -~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--P~Da~lYsNRAac~~k 404 (539)
T KOG0548|consen 328 -HRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--PEDARLYSNRAACYLK 404 (539)
T ss_pred -hcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHH
Confidence 22232211 1111344566788888888888887764 5566777777778888
Q ss_pred cCChHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010215 427 TGKTDECLSQLLDDMVNKHHLSLD-ITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEV 496 (515)
Q Consensus 427 ~g~~~~A~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 496 (515)
.|.+..|+ .=.+...+ ..|+ ...|.-=..++.-..++++|.+.|.+.++ ..|+..-+..-+.-|
T Consensus 405 L~~~~~aL-~Da~~~ie---L~p~~~kgy~RKg~al~~mk~ydkAleay~eale--~dp~~~e~~~~~~rc 469 (539)
T KOG0548|consen 405 LGEYPEAL-KDAKKCIE---LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE--LDPSNAEAIDGYRRC 469 (539)
T ss_pred HhhHHHHH-HHHHHHHh---cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCchhHHHHHHHHHH
Confidence 88888877 44555444 2333 33343334444455677778888877775 345555444444444
No 96
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=1.3e-05 Score=68.79 Aligned_cols=252 Identities=15% Similarity=0.187 Sum_probs=165.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChh
Q 010215 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVD 254 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 254 (515)
++-+.-.|.+..++..-...... +-++..-.-+-++|...|..... ..+++.+-.|.......+......-++.+
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~---~~eI~~~~~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIV---ISEIKEGKATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccc---ccccccccCChHHHHHHHHHHhhCcchhH
Confidence 45556667777776655554432 13444444455666666654432 23344333344444444444444444444
Q ss_pred HHH-HHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010215 255 EAQ-WTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKM 333 (515)
Q Consensus 255 ~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 333 (515)
+-. ++.+.+.......+......-...|++.|++++|++...... +......=...+.+..+.+.|.+.+++|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 344444444333343434444567888999999998887622 2233333345566778889999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 010215 334 KIVGSKPDSRFFNCLIYTLGR----ASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEH 409 (515)
Q Consensus 334 ~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 409 (515)
.+. .+..+.+.|..++.+ .+.+.+|.-+|+ ++.++ ..|+..+.+....++...|++++|..++++.....
T Consensus 164 q~i---ded~tLtQLA~awv~la~ggek~qdAfyife-E~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd- 237 (299)
T KOG3081|consen 164 QQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFE-ELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD- 237 (299)
T ss_pred Hcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHH-HHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-
Confidence 863 355677766666654 567999999999 77653 56899999999999999999999999999999875
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHc
Q 010215 410 CKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNK 444 (515)
Q Consensus 410 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 444 (515)
.-++.+...++-.-...|...++..+.+..+...
T Consensus 238 -~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 238 -AKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred -CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 5667888888888888898888777888887663
No 97
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=1.3e-06 Score=82.75 Aligned_cols=253 Identities=9% Similarity=0.071 Sum_probs=169.1
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 010215 246 GWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEE 325 (515)
Q Consensus 246 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 325 (515)
-+.+.|++.+|.-.|+...... +-+...|..|......+++-..|+..+++.++.. +-|......|.-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 3557788888888888877764 3466788888888888888888888888877763 2256677777777777887788
Q ss_pred HHHHHHHHHhcCCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 010215 326 AIRITEKMKIVGSKP--------DSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKA 397 (515)
Q Consensus 326 a~~~~~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 397 (515)
|.+.++.-++...+- +...-.. ..+.....+....++|-......+..+|......|.-.|--.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 888877775543110 0000000 011111223334445542444555456777777787778888889999
Q ss_pred HHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010215 398 FHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD-ITTYTLVIHGLCRANKCEWAYLLFKE 476 (515)
Q Consensus 398 ~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 476 (515)
.+.|+.+.... +-|...|+.|...++...+.++|+ ..+.+..+ +.|+ +..+-.|.-.|...|.+++|.+.|=+
T Consensus 450 iDcf~~AL~v~--Pnd~~lWNRLGAtLAN~~~s~EAI-sAY~rALq---LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 450 VDCFEAALQVK--PNDYLLWNRLGATLANGNRSEEAI-SAYNRALQ---LQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHhcC--CchHHHHHHhhHHhcCCcccHHHH-HHHHHHHh---cCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 99999888843 344667888888888888888888 88888876 5666 34455567778888999988888766
Q ss_pred HHh---CC------CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010215 477 MIG---HD------ITPRYQTCRLILDEVKQKHMYDAAEKI 508 (515)
Q Consensus 477 m~~---~~------~~p~~~~~~~ll~~~~~~g~~~~a~~~ 508 (515)
.+. .+ -.++..+|.+|-.++.-.++.|.+.++
T Consensus 524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 543 21 122345788777777777777755544
No 98
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.77 E-value=4.6e-05 Score=82.73 Aligned_cols=336 Identities=13% Similarity=0.040 Sum_probs=209.2
Q ss_pred HHHcCCChHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC------CCC--HHHHHHHHHHH
Q 010215 143 ILGKVRQMDQMRALLEEMSKGH-IVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGL------EKN--TETMNLLLDTL 213 (515)
Q Consensus 143 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~~~--~~~~~~ll~~~ 213 (515)
.+...|+++.+..+++.++... ..++.........+...|++++|..++......-- .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777777776653211 11122223335566778999999999987754210 111 11222334456
Q ss_pred HHcCCHHHHHHHHHHhhcCCCC-C----hhhHHHHHHHHHccCChhHHHHHHHHHHhC----CC-CccHhHHHHHHHHHH
Q 010215 214 CKEGKVELARSVFLELKSCIPP-N----AHTFNIFIHGWCKINRVDEAQWTIQEMKGH----GC-HPCVISYSTIIQSYC 283 (515)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~ 283 (515)
...|+++.|...+++.....+. + ....+.+...+...|++++|...+++.... |- .....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6789999999999884332222 1 134566677788899999999999887642 11 111234556677788
Q ss_pred hcCChhHHHHHHHHHHH----CCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCC--CHHHHHHHHHHH
Q 010215 284 RQYNFSKVYELLDEMQA----QGCP--P-NVVTYTTVMSYLAKSGDFEEAIRITEKMKIVG--SKP--DSRFFNCLIYTL 352 (515)
Q Consensus 284 ~~g~~~~A~~~~~~m~~----~g~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~~~ 352 (515)
..|++++|...+++... .+.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 99999999999887654 2221 1 22334455566777899999999998876531 112 233444456677
Q ss_pred HhcCCHHHHHHHHHhhchhCCC-CCCHHHH-----HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCH---HhHHHHHHH
Q 010215 353 GRASRVQEAVYVYQVEMPENGV-APDTSTF-----NTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNV---QTFHPLLKS 423 (515)
Q Consensus 353 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~---~~~~~ll~~ 423 (515)
...|+.++|...+. ....... ......+ ...+..+...|+.+.|.+++....... ..... ..+..+..+
T Consensus 623 ~~~G~~~~A~~~l~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~-~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 623 LARGDLDNARRYLN-RLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE-FANNHFLQGQWRNIARA 700 (903)
T ss_pred HHcCCHHHHHHHHH-HHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC-CccchhHHHHHHHHHHH
Confidence 88999999998887 4432100 0111111 112244556899999999987765422 11111 113456667
Q ss_pred HHhcCChHHHHHHHHHHHHHc---CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010215 424 CFKTGKTDECLSQLLDDMVNK---HHLSLD-ITTYTLVIHGLCRANKCEWAYLLFKEMIGHD 481 (515)
Q Consensus 424 ~~~~g~~~~A~~~~~~~~~~~---~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 481 (515)
+...|+.++|. .++++.... .+..++ ..+...+..++.+.|+.++|...+.+..+..
T Consensus 701 ~~~~g~~~~A~-~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 701 QILLGQFDEAE-IILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88899999998 788877652 232222 3456667788899999999999999998643
No 99
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.75 E-value=0.00022 Score=67.43 Aligned_cols=128 Identities=9% Similarity=0.118 Sum_probs=73.3
Q ss_pred CCChhhHHHHHHHhcCCCCH--HHHHHHhhccccCCCCcC-CHHHHHHHHHHh--hhCHHHHHHHHHHhccCCCCCCCHH
Q 010215 61 SPRLPDIDVIISKVHVGSSE--DEVFQSLKQDHVCNAIQP-SHYLVNKLIHRF--KDDWKSALGIFRWAGSCPGYEHSSE 135 (515)
Q Consensus 61 ~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~g~~p-~~~~~~~ll~~~--~~~~~~a~~~~~~~~~~~~~~~~~~ 135 (515)
+-|+.+|+.+|...+..... .+.++++. ++-| ....|..-|..- .++.+....+|..+..+ ..+..
T Consensus 17 P~di~sw~~lire~qt~~~~~~R~~YEq~~------~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk---vLnlD 87 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQPIDKVRETYEQLV------NVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK---VLNLD 87 (656)
T ss_pred CccHHHHHHHHHHHccCCHHHHHHHHHHHh------ccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---HhhHh
Confidence 45899999999876655332 23566664 3334 344455445543 25888888899887522 23577
Q ss_pred HHHHHHHHHHc-CCChHH----HHHHHHHHhcC---C---CCCHHHHHHHHHH------HHhcCCHHHHHHHHHHHhhC
Q 010215 136 IYEMMVDILGK-VRQMDQ----MRALLEEMSKG---H---IVTLNTIAKVMRR------FSGAGQWEDAVRTFDELGTF 197 (515)
Q Consensus 136 ~~~~li~~~~~-~g~~~~----A~~~~~~~~~~---~---~~~~~~~~~li~~------~~~~g~~~~A~~~~~~m~~~ 197 (515)
.|..-++.--+ .|+... ..+.|+-.... + ..-|+.|...+.. |..+.+.+...+++.++...
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 78777765543 233333 22333333221 2 2457777665554 34444556667777777653
No 100
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.75 E-value=5.6e-05 Score=74.27 Aligned_cols=127 Identities=13% Similarity=0.088 Sum_probs=98.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC-HHhHHHHHH
Q 010215 344 FFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPN-VQTFHPLLK 422 (515)
Q Consensus 344 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~ 422 (515)
.|......+.+.+..++|...+. +.... .......|......+...|..++|.+.|..... +.|+ .....++..
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~-Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~ 726 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLL-EASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHH-HHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHH
Confidence 45566778888888888887776 44332 234566777777888889999999999999888 4465 456788888
Q ss_pred HHHhcCChHHHHHH--HHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 423 SCFKTGKTDECLSQ--LLDDMVNKHHLSL-DITTYTLVIHGLCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 423 ~~~~~g~~~~A~~~--~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 479 (515)
.+.+.|+..-|. . ++.++.+ +.| +...|-.+...+-+.|+.+.|.+.|....+
T Consensus 727 ~lle~G~~~la~-~~~~L~dalr---~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 727 LLLELGSPRLAE-KRSLLSDALR---LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHhCCcchHH-HHHHHHHHHh---hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 889999877766 5 7888877 334 678899999999999999999999988775
No 101
>PLN02789 farnesyltranstransferase
Probab=98.73 E-value=1.7e-05 Score=73.32 Aligned_cols=214 Identities=7% Similarity=-0.056 Sum_probs=140.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 010215 137 YEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAG-QWEDAVRTFDELGTFGLEKNTETMNLLLDTLCK 215 (515)
Q Consensus 137 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 215 (515)
+..+-..+...++.++|+.+.+.+.+.++.+.+++......+...| .+++++..++++.+.. +.+..+|+...-.+.+
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~ 118 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHH
Confidence 3334444556677888888888888888877777665555666666 5688888888887754 3355556655545555
Q ss_pred cCCH--HHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhc---CCh--
Q 010215 216 EGKV--ELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQ---YNF-- 288 (515)
Q Consensus 216 ~~~~--~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~-- 288 (515)
.|+. +++...++.+.+..+.|..+|+...-++.+.|+++++++.++++.+.+ +.|...|+.....+.+. |..
T Consensus 119 l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred cCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccc
Confidence 5552 566777767666667788888888888888888888888888888765 33566777666555443 222
Q ss_pred --hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 010215 289 --SKVYELLDEMQAQGCPPNVVTYTTVMSYLAK----SGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGR 354 (515)
Q Consensus 289 --~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 354 (515)
++.+++..++.... +-|...|+.+...+.. .+...+|.+.+.+..+.+ +.+......|++.|+.
T Consensus 198 ~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 198 MRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 35666665665543 3356677766666665 234455777776665543 4456666777777764
No 102
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.73 E-value=2.3e-06 Score=76.52 Aligned_cols=188 Identities=9% Similarity=0.003 Sum_probs=129.5
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC-HHH
Q 010215 131 EHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTL---NTIAKVMRRFSGAGQWEDAVRTFDELGTFGLE-KN-TET 205 (515)
Q Consensus 131 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~-~~~ 205 (515)
...+..+..+...+.+.|++++|...|+++...++.+. .++..+...+.+.|++++|+..++++.+.... +. ..+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 44677888888889999999999999999988766543 56677788999999999999999999875321 11 124
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHH
Q 010215 206 MNLLLDTLCKE--------GKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYST 277 (515)
Q Consensus 206 ~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 277 (515)
+..+..++... |+.+.|.+.++.+....|.+...+..+..... ... .. ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~------~~--------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRN------RL--------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHH------HH--------HHHHHH
Confidence 44455555544 67888888888865555555444433322111 000 00 011224
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010215 278 IIQSYCRQYNFSKVYELLDEMQAQGC--PPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIV 336 (515)
Q Consensus 278 li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 336 (515)
+...|.+.|++++|+..++...+... +.....+..+..++.+.|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55678888999999999998876521 223567888889999999999999988887764
No 103
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=7.6e-05 Score=73.79 Aligned_cols=90 Identities=14% Similarity=0.103 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCH----
Q 010215 376 PDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDI---- 451 (515)
Q Consensus 376 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~---- 451 (515)
.|+...+.-...++.+.++++|..++-...+ |...+..|...|-.-. . ++-+.|.-...-.|+.
T Consensus 1078 sDp~ll~RcadFF~~~~qyekAV~lL~~ar~----------~~~AlqlC~~~nv~vt-e-e~aE~mTp~Kd~~~~e~~R~ 1145 (1416)
T KOG3617|consen 1078 SDPKLLRRCADFFENNQQYEKAVNLLCLARE----------FSGALQLCKNRNVRVT-E-EFAELMTPTKDDMPNEQERK 1145 (1416)
T ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----------HHHHHHHHhcCCCchh-H-HHHHhcCcCcCCCccHHHHH
Confidence 3556666666667777777777777665544 3333444443332111 1 3333343322223332
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010215 452 TTYTLVIHGLCRANKCEWAYLLFKEM 477 (515)
Q Consensus 452 ~~~~~li~~~~~~g~~~~A~~~~~~m 477 (515)
.....+...|.++|.+..|-+-|.+.
T Consensus 1146 ~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1146 QVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHhccchHHHHHHHhhh
Confidence 34566777888888888887766555
No 104
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.71 E-value=4.6e-06 Score=81.12 Aligned_cols=238 Identities=15% Similarity=0.180 Sum_probs=150.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHH
Q 010215 201 KNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQ 280 (515)
Q Consensus 201 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 280 (515)
|-...-..+...+.+.|-...|..+|+++. .|.-.|.+|+..|+..+|..+..+..++ +||...|..+.+
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle--------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE--------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH--------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 333334456666777777777777777643 3666777777777777777777776664 577777777777
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 010215 281 SYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQE 360 (515)
Q Consensus 281 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 360 (515)
......-+++|.++.+..... +-..+.....+.++++++.+.++.-.+.. +.-..+|-.+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHH
Confidence 766666677777777654322 11111222233677777777777766654 4556677777777777788888
Q ss_pred HHHHHHhhchhCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHH
Q 010215 361 AVYVYQVEMPENGVAPD-TSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLD 439 (515)
Q Consensus 361 A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 439 (515)
|.+.|. .-.. ..|| ...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|+ +.+.
T Consensus 538 av~aF~-rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn--~~~w~iWENymlvsvdvge~eda~-~A~~ 611 (777)
T KOG1128|consen 538 AVKAFH-RCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN--YQHWQIWENYMLVSVDVGEFEDAI-KAYH 611 (777)
T ss_pred HHHHHH-HHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC--CCCCeeeechhhhhhhcccHHHHH-HHHH
Confidence 877776 3322 2344 4578888888888888888888888877754 333445555666667778888877 7777
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHH
Q 010215 440 DMVNKHHLSLDITTYTLVIHGLC 462 (515)
Q Consensus 440 ~~~~~~~~~p~~~~~~~li~~~~ 462 (515)
++........|..+...++....
T Consensus 612 rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 612 RLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHHhhhhcccchhhHHHHHHHH
Confidence 76653332234444444444433
No 105
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.70 E-value=8.7e-05 Score=72.46 Aligned_cols=317 Identities=15% Similarity=0.187 Sum_probs=177.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 010215 137 YEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKE 216 (515)
Q Consensus 137 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 216 (515)
..+++.++. .++.+|..+|-+- +.....+..|....+|++|+.+-+. .|.+.-...-.+.+.++...
T Consensus 536 vra~lail~--kkfk~ae~ifleq--------n~te~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt 602 (1636)
T KOG3616|consen 536 VRAMLAILE--KKFKEAEMIFLEQ--------NATEEAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDT 602 (1636)
T ss_pred HHHHHHHHH--hhhhHHHHHHHhc--------ccHHHHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhc
Confidence 344444443 3577777777431 1112225667777788888776543 23222223334556666667
Q ss_pred CCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHH
Q 010215 217 GKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLD 296 (515)
Q Consensus 217 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 296 (515)
|+-++|-++-.. +.. --+.|+.|.+.|.+-.|.+....=... ..|......+..++.+..-+++|=.+|+
T Consensus 603 ~qd~ka~elk~s-------dgd-~laaiqlyika~~p~~a~~~a~n~~~l--~~de~il~~ia~alik~elydkagdlfe 672 (1636)
T KOG3616|consen 603 GQDEKAAELKES-------DGD-GLAAIQLYIKAGKPAKAARAALNDEEL--LADEEILEHIAAALIKGELYDKAGDLFE 672 (1636)
T ss_pred Cchhhhhhhccc-------cCc-cHHHHHHHHHcCCchHHHHhhcCHHHh--hccHHHHHHHHHHHHhhHHHHhhhhHHH
Confidence 766665543211 111 124567777777777665543221111 1233333333333333333333333333
Q ss_pred HHHHC----------------------CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 010215 297 EMQAQ----------------------GCPPNVVTY-TTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLG 353 (515)
Q Consensus 297 ~m~~~----------------------g~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 353 (515)
++..- .++..+++. .....-+...|+++.|..-|-+.. ...-.+.+-.
T Consensus 673 ki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai 743 (1636)
T KOG3616|consen 673 KIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAI 743 (1636)
T ss_pred HhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHh
Confidence 33210 011111111 011122233444444444433321 1122344555
Q ss_pred hcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHH
Q 010215 354 RASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDEC 433 (515)
Q Consensus 354 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A 433 (515)
....|.+|..+++ .+.... .-..-|..+...|+..|+++.|.++|.+.- .++-.+..|.+.|+++.|
T Consensus 744 ~akew~kai~ild-niqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 744 GAKEWKKAISILD-NIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred hhhhhhhhHhHHH-Hhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccHHHH
Confidence 6778888888887 665532 233456777888999999999999887642 244467788899999988
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010215 434 LSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAV 511 (515)
Q Consensus 434 ~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 511 (515)
. ++-.+. .|.......|-+-..-+-+.|++.+|.+++-.. | .|+. .+..|.+.|..++.+++.++
T Consensus 811 ~-kla~e~---~~~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 811 F-KLAEEC---HGPEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred H-HHHHHh---cCchhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-CchH-----HHHHHHhhCcchHHHHHHHH
Confidence 7 666555 344445667777777788889999998888665 3 5664 56778899999998888764
No 106
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=5.1e-06 Score=78.76 Aligned_cols=254 Identities=13% Similarity=0.079 Sum_probs=183.8
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhH
Q 010215 211 DTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSK 290 (515)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 290 (515)
.-+.+.|++.+|.-.|+......|.+...|..|.......++-..|+..+++..+.. +.+....-.|.-.|...|.-.+
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 346688999999999998666678889999999999999999999999999998875 4467778888888999999999
Q ss_pred HHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010215 291 VYELLDEMQAQGCP--------PNVVTYTTVMSYLAKSGDFEEAIRITEKMKI-VGSKPDSRFFNCLIYTLGRASRVQEA 361 (515)
Q Consensus 291 A~~~~~~m~~~g~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A 361 (515)
|++.++.......+ ++..+-.. ..+.....+....++|-++.. .+..+|+.+...|.-.|--.|+++.|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 99999988654211 00000000 111222234455555555544 45458888999999999999999999
Q ss_pred HHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHH-hHHHHHHHHHhcCChHHHHHHHHHH
Q 010215 362 VYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQ-TFHPLLKSCFKTGKTDECLSQLLDD 440 (515)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~ 440 (515)
...|+ ...... +-|..+||.|...++...+.++|+..|.+..+ +.|+.+ ....|.-+|...|.+++|+ ..|-.
T Consensus 450 iDcf~-~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq---LqP~yVR~RyNlgIS~mNlG~ykEA~-~hlL~ 523 (579)
T KOG1125|consen 450 VDCFE-AALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ---LQPGYVRVRYNLGISCMNLGAYKEAV-KHLLE 523 (579)
T ss_pred HHHHH-HHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh---cCCCeeeeehhhhhhhhhhhhHHHHH-HHHHH
Confidence 99999 444321 23678999999999999999999999999999 678743 4555777899999999999 44444
Q ss_pred HHHcCC--------CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010215 441 MVNKHH--------LSLDITTYTLVIHGLCRANKCEWAYLL 473 (515)
Q Consensus 441 ~~~~~~--------~~p~~~~~~~li~~~~~~g~~~~A~~~ 473 (515)
.+.-.. ..++...|.+|=.++.-.++.|-+.+.
T Consensus 524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 433111 112345777776667667776655443
No 107
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.67 E-value=2.7e-06 Score=72.84 Aligned_cols=127 Identities=11% Similarity=0.049 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 010215 133 SSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDT 212 (515)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 212 (515)
|..+...++....+.|++..|...|.+.....+.+|.+++.+..+|.+.|++++|..-|.+..+.- .-++..++.+.-.
T Consensus 99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms 177 (257)
T COG5010 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMS 177 (257)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHH
Confidence 334444444444444444444444444444444444444444444444444444444444444321 1133333444444
Q ss_pred HHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHH
Q 010215 213 LCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTI 260 (515)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 260 (515)
+.-.|+.+.|..++......-+.|..+-..|.......|++++|.++.
T Consensus 178 ~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 178 LLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 444444444444444433332334444444444444444444444443
No 108
>PF12854 PPR_1: PPR repeat
Probab=98.67 E-value=3.8e-08 Score=56.94 Aligned_cols=32 Identities=38% Similarity=0.701 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010215 446 HLSLDITTYTLVIHGLCRANKCEWAYLLFKEM 477 (515)
Q Consensus 446 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 477 (515)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56667777777777777777777777776666
No 109
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.66 E-value=1.2e-05 Score=78.24 Aligned_cols=239 Identities=10% Similarity=0.055 Sum_probs=183.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHH
Q 010215 165 IVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFI 244 (515)
Q Consensus 165 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 244 (515)
++-|..-..+...+...|-...|+.+|+++.. |.-++.+|+..|+..+|..+..+..+ -+|+...|..+.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LG 464 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLG 464 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhh
Confidence 35677777788999999999999999988754 66788899999999999999887444 579999999999
Q ss_pred HHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 010215 245 HGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFE 324 (515)
Q Consensus 245 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 324 (515)
+......-+++|.++++....+ +-..+.....+.+++.++.+.|+.-.+.. +.-..+|-....+..+.+++.
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhH
Confidence 9988888899999998876542 11222223344789999999998866542 234567878888888999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010215 325 EAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEM 404 (515)
Q Consensus 325 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 404 (515)
.|.+.|....... +.+...||.+-.+|.+.++-.+|...+. +..+.+ .-+...|..-+....+.|.+++|++.+.++
T Consensus 537 ~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~-EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 537 AAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLK-EALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHH-HHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 9999998887653 4456789999999999999999999999 665555 345566777777888999999999999988
Q ss_pred HhCCCCCCCHHhHHHHHHHH
Q 010215 405 NKLEHCKPNVQTFHPLLKSC 424 (515)
Q Consensus 405 ~~~~~~~p~~~~~~~ll~~~ 424 (515)
.......-|......++...
T Consensus 614 l~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 614 LDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHhhhhcccchhhHHHHHHH
Confidence 76432223444444444443
No 110
>PF12854 PPR_1: PPR repeat
Probab=98.65 E-value=4.4e-08 Score=56.65 Aligned_cols=32 Identities=38% Similarity=0.764 Sum_probs=18.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010215 373 GVAPDTSTFNTMITMFSHHGHHEKAFHVLEEM 404 (515)
Q Consensus 373 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 404 (515)
|+.||..+|+++|.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 111
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.65 E-value=0.00016 Score=71.61 Aligned_cols=233 Identities=15% Similarity=0.108 Sum_probs=145.3
Q ss_pred CHHHHHHHHHHh----hhCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhc-----------C
Q 010215 99 SHYLVNKLIHRF----KDDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSK-----------G 163 (515)
Q Consensus 99 ~~~~~~~ll~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~ 163 (515)
|..|-..++.-- .++.+.|.+-.+.+. +..+|..+.+++.+..+++-|.-.+-.|.. .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 566666666532 157777777666664 457899999999999888888777666643 1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHH
Q 010215 164 HIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIF 243 (515)
Q Consensus 164 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 243 (515)
+.. +.-..+.....+.|..++|+.+|++-.+ |..+=..|...|.+++|.++-+.-.+ +. =..+|...
T Consensus 798 ~~~--e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DR-iH-Lr~Tyy~y 864 (1416)
T KOG3617|consen 798 NGE--EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDR-IH-LRNTYYNY 864 (1416)
T ss_pred CCc--chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccc-ee-hhhhHHHH
Confidence 111 2212223445677899999999988876 34455677788999999888654211 11 12355556
Q ss_pred HHHHHccCChhHHHHHHHHHHhCC-------------------CCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 010215 244 IHGWCKINRVDEAQWTIQEMKGHG-------------------CHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCP 304 (515)
Q Consensus 244 i~~~~~~g~~~~A~~~~~~~~~~~-------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 304 (515)
..-+-..++.+.|++.|++..... -..|...|.-....+-..|+.|.|+.+|....+
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---- 940 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---- 940 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----
Confidence 666667788888888877542110 011223333334444456666666666665542
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010215 305 PNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQ 366 (515)
Q Consensus 305 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 366 (515)
|-+++...|-.|+.++|-++-++ .-|....-.|...|-..|++.+|...|.
T Consensus 941 -----~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 941 -----YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred -----hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 34455555666777777666554 3455555667777777788887777776
No 112
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.64 E-value=3.6e-05 Score=80.22 Aligned_cols=242 Identities=11% Similarity=0.078 Sum_probs=183.0
Q ss_pred HHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHH
Q 010215 255 EAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQ-GCPPN---VVTYTTVMSYLAKSGDFEEAIRIT 330 (515)
Q Consensus 255 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~---~~~~~~li~~~~~~g~~~~a~~~~ 330 (515)
.|.+.-+..+.. +-+...|-.-|....+.++.++|.++.++.+.. ++.-. ...|.++++.-..-|.-+...++|
T Consensus 1443 saeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1443 SAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 344443333332 335677888899999999999999999998764 22211 235666666666677888899999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 010215 331 EKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHC 410 (515)
Q Consensus 331 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 410 (515)
+++.+. ...-.+|..|...|.+.+..++|-++++ .|.++- ......|...+..+.++++-+.|..++.+..+ .
T Consensus 1521 eRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~-~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~---~ 1593 (1710)
T KOG1070|consen 1521 ERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLR-LMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALK---S 1593 (1710)
T ss_pred HHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHH-HHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHh---h
Confidence 998875 3345678899999999999999999999 766542 25678899999999999999999999999988 4
Q ss_pred CCCH---HhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 010215 411 KPNV---QTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQ 487 (515)
Q Consensus 411 ~p~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 487 (515)
-|.. .........-.+.|+.+.+. .+|+.....++-. ...|+.+|+.-.++|+.+.+..+|++....++.|-..
T Consensus 1594 lPk~eHv~~IskfAqLEFk~GDaeRGR-tlfEgll~ayPKR--tDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070|consen 1594 LPKQEHVEFISKFAQLEFKYGDAERGR-TLFEGLLSAYPKR--TDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKM 1670 (1710)
T ss_pred cchhhhHHHHHHHHHHHhhcCCchhhH-HHHHHHHhhCccc--hhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHh
Confidence 4552 23344455567899999988 9999998865444 4469999999999999999999999999988887653
Q ss_pred --HHHHHHHHHHhcCCHHHHHHH
Q 010215 488 --TCRLILDEVKQKHMYDAAEKI 508 (515)
Q Consensus 488 --~~~~ll~~~~~~g~~~~a~~~ 508 (515)
.|.-.|..=.+.|+-+.++.+
T Consensus 1671 KfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1671 KFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred HHHHHHHHHHHHhcCchhhHHHH
Confidence 556666555677876655443
No 113
>PLN02789 farnesyltranstransferase
Probab=98.64 E-value=4.6e-05 Score=70.40 Aligned_cols=207 Identities=8% Similarity=0.025 Sum_probs=134.7
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCh-
Q 010215 177 RFSGAGQWEDAVRTFDELGTFGLEK-NTETMNLLLDTLCKEG-KVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRV- 253 (515)
Q Consensus 177 ~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~- 253 (515)
.+...++.++|+.+..++++. .| +..+|+....++...| ++++++..++++....+.+..+|+.....+.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchh
Confidence 445567788888888888874 44 4445665656666666 578888888887666777777888776666666653
Q ss_pred -hHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCH----HH
Q 010215 254 -DEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKS---GDF----EE 325 (515)
Q Consensus 254 -~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~----~~ 325 (515)
+++..+++++.+.. +.+..+|+...-++...|+++++++.++++.+.+.. |..+|+.....+.+. |.. +.
T Consensus 124 ~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 124 ANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence 67788888887765 457788888888888888899999999998887644 566666665555443 222 34
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHh
Q 010215 326 AIRITEKMKIVGSKPDSRFFNCLIYTLGRA----SRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSH 390 (515)
Q Consensus 326 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 390 (515)
..+...+++... +-+...|+.+...+... ++..+|...+. .....+ ..+......|+..|+.
T Consensus 202 el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~-~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 202 ELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCL-EVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHH-Hhhccc-CCcHHHHHHHHHHHHh
Confidence 555555555543 44556666666666552 33445666655 333322 2244455555555553
No 114
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.63 E-value=8.4e-05 Score=75.06 Aligned_cols=383 Identities=10% Similarity=-0.047 Sum_probs=222.8
Q ss_pred CHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010215 113 DWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFD 192 (515)
Q Consensus 113 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 192 (515)
+...++..|....+. .+.-..+|..|...|...-+...|.+.|+..-+-+..+..+-......|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 555566555555321 122346899999999998899999999999999888888888888999999999999999843
Q ss_pred HHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCcc
Q 010215 193 ELGTFG-LEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPC 271 (515)
Q Consensus 193 ~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 271 (515)
..-+.. ...-...|..+.-.|.+.++...+...|+...+..|.|...|..+..+|..+|++..|.++|.+.... .|+
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~ 628 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL 628 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH
Confidence 332211 01112233335556778889999999999877777889999999999999999999999999998775 343
Q ss_pred HhHHHH--HHHHHHhcCChhHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHhc
Q 010215 272 VISYST--IIQSYCRQYNFSKVYELLDEMQAQ------GCPPNVVTYTTVMSYLAKSGDF-------EEAIRITEKMKIV 336 (515)
Q Consensus 272 ~~~~~~--li~~~~~~g~~~~A~~~~~~m~~~------g~~~~~~~~~~li~~~~~~g~~-------~~a~~~~~~~~~~ 336 (515)
. +|.. ..-.-+..|++.+|+..+...... +..--..++..+...+.-.|=. +++++.|.-....
T Consensus 629 s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 629 S-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred h-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 2 2222 222345689999999988876542 1111123333333333333322 3333333333222
Q ss_pred CCCCCHHHHHHHHHHH-----------------------HhcCCH---H---HHHHHHHhhchhCCCCCCHHHHHHHHHH
Q 010215 337 GSKPDSRFFNCLIYTL-----------------------GRASRV---Q---EAVYVYQVEMPENGVAPDTSTFNTMITM 387 (515)
Q Consensus 337 ~~~~~~~~~~~li~~~-----------------------~~~g~~---~---~A~~~~~~~~~~~~~~~~~~~~~~li~~ 387 (515)
....+...|-.+-+++ -+.+.. + -+.+.+- .......+..+|..++..
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~---~hlsl~~~~~~WyNLGin 784 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGI---AHLSLAIHMYPWYNLGIN 784 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhh---HHHHHhhccchHHHHhHH
Confidence 2122222222221111 111111 0 0111111 000111233445555544
Q ss_pred HHh----C----CCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 010215 388 FSH----H----GHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIH 459 (515)
Q Consensus 388 ~~~----~----g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~ 459 (515)
|.+ . .+...|+..+.+.++.. .-+..+|+.|.- ....|++.-|. ..|-+-.. ..+.+..+|..+.-
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~--ann~~~WnaLGV-lsg~gnva~aQ-HCfIks~~--sep~~~~~W~Nlgv 858 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSLC--ANNEGLWNALGV-LSGIGNVACAQ-HCFIKSRF--SEPTCHCQWLNLGV 858 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHh--hccHHHHHHHHH-hhccchhhhhh-hhhhhhhh--ccccchhheeccce
Confidence 433 1 12346777777777743 344555554443 35556666554 44433322 22335667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010215 460 GLCRANKCEWAYLLFKEMIGHDITPR-YQTCRLILDEVKQKHMYDAAEKIEAV 511 (515)
Q Consensus 460 ~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~ 511 (515)
.+.+..+++-|...|...+. +.|+ ...|-..--.-...|+.-++..+|..
T Consensus 859 L~l~n~d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 859 LVLENQDFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred eEEecccHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 78888888888888888875 4454 44443222222456766666666653
No 115
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.63 E-value=7.2e-06 Score=73.35 Aligned_cols=185 Identities=12% Similarity=0.021 Sum_probs=130.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChh---
Q 010215 165 IVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNT---ETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAH--- 238 (515)
Q Consensus 165 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 238 (515)
......+..++..+.+.|++++|...|+++.... +.+. .++..+..++...|++++|...++++.+..|.+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3567777788889999999999999999987753 2222 46677888999999999999999996655444443
Q ss_pred hHHHHHHHHHcc--------CChhHHHHHHHHHHhCCCCccH-hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 010215 239 TFNIFIHGWCKI--------NRVDEAQWTIQEMKGHGCHPCV-ISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVT 309 (515)
Q Consensus 239 ~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 309 (515)
++..+..++.+. |+.++|.+.|+++.... |+. ..+..+..... .... .. ..
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~------~~--------~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNR------LA--------GK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHH------HH--------HH
Confidence 455566666654 77888999998887753 332 22322211110 0000 00 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchh
Q 010215 310 YTTVMSYLAKSGDFEEAIRITEKMKIVGS--KPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPE 371 (515)
Q Consensus 310 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 371 (515)
...+...+.+.|++++|...+....+... +.....+..+..++.+.|++++|...++ .+..
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~-~l~~ 231 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAA-VLGA 231 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH-HHHh
Confidence 12456678999999999999999987632 2345788899999999999999999998 6554
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.62 E-value=1.2e-05 Score=68.90 Aligned_cols=154 Identities=14% Similarity=0.103 Sum_probs=69.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChh
Q 010215 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVD 254 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 254 (515)
-..+...|+-+.+..+....... ..-|......++....+.|++..|...+.+....-|+|...|+.+.-+|.+.|+++
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~ 151 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFD 151 (257)
T ss_pred HHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChh
Confidence 34444444444444444433221 12233333344444555555555555555544444455555555555555555555
Q ss_pred HHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010215 255 EAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITE 331 (515)
Q Consensus 255 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 331 (515)
+|..-|.+..+.- +-+....|.+.-.+.-.|+.+.|..++......+.. |...-..+.-.....|+++.|.++..
T Consensus 152 ~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 152 EARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 5555555444431 112333444444444445555555555444443211 33334444444444555555544443
No 117
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.59 E-value=6.6e-05 Score=77.46 Aligned_cols=56 Identities=11% Similarity=0.122 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010215 309 TYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQ 366 (515)
Q Consensus 309 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 366 (515)
++..+..+|-+.|+.+++..+++++.+.. +-++.+.|.+...|... ++++|..++.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 44444445555555555555555555443 34444455555555444 5555554444
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.58 E-value=1.3e-05 Score=68.95 Aligned_cols=119 Identities=11% Similarity=0.056 Sum_probs=65.0
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHH-HccCC--hhHHH
Q 010215 181 AGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGW-CKINR--VDEAQ 257 (515)
Q Consensus 181 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~A~ 257 (515)
.++.++++..++...+.. +.|...|..+...|...|++++|...|++.....+.+...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 344455555555554432 345555666666666666666666666654444455555555555542 44444 35666
Q ss_pred HHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 010215 258 WTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQ 301 (515)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 301 (515)
+++++..+.. +.+..++..+...+.+.|++++|+..|+++.+.
T Consensus 131 ~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666655543 224455555555556666666666666665554
No 119
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.57 E-value=5.8e-05 Score=78.74 Aligned_cols=223 Identities=11% Similarity=0.062 Sum_probs=139.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC-----CCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHH
Q 010215 202 NTETMNLLLDTLCKEGKVELARSVFLELKSCI-----PPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYS 276 (515)
Q Consensus 202 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 276 (515)
....|-..|......++.+.|++++++....+ ..-...|.++++.-..-|.-+...++|+++.+.. -....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 34556666667777777777777777743322 1223456666666666676677777777776642 1244567
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhc
Q 010215 277 TIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSK-PDSRFFNCLIYTLGRA 355 (515)
Q Consensus 277 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~ 355 (515)
.|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+..+-+.|..++.+..+.-.. -......-.+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 7777777777777777777777764 2335567777777777777777777777777664211 1233344445555677
Q ss_pred CCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCH--HhHHHHHHHHHhcCCh
Q 010215 356 SRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNV--QTFHPLLKSCFKTGKT 430 (515)
Q Consensus 356 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~--~~~~~ll~~~~~~g~~ 430 (515)
|+.+.+..+|+ ..... .+.-...|+..|+.-.++|+.+.+..+|++....+ +.|-. ..|...+..=-..|+-
T Consensus 1614 GDaeRGRtlfE-gll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~-l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1614 GDAERGRTLFE-GLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK-LSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred CCchhhHHHHH-HHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC-CChhHhHHHHHHHHHHHHhcCch
Confidence 77777777777 33322 12245577777777777888888888888877766 55542 2344445443444443
No 120
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.57 E-value=0.00014 Score=73.55 Aligned_cols=149 Identities=15% Similarity=-0.006 Sum_probs=109.0
Q ss_pred CHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHH
Q 010215 113 DWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIV---TLNTIAKVMRRFSGAGQWEDAVR 189 (515)
Q Consensus 113 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~ 189 (515)
+..+|.+-|+.+.... +.|...+..+.+.|++..+++.|..+.-...+..+. .++-. ...-.|.+.++...|+.
T Consensus 507 Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~-~rG~yyLea~n~h~aV~ 583 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWV-QRGPYYLEAHNLHGAVC 583 (1238)
T ss_pred HHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhh-hccccccCccchhhHHH
Confidence 4556777777764211 346778889999999999999999986555554442 12221 14566888899999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHh
Q 010215 190 TFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKG 265 (515)
Q Consensus 190 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 265 (515)
.|+...+.. +.|...|..+..+|.++|++..|.++|.+...-.|.+...-.-..-.-+..|.+.+|...+.....
T Consensus 584 ~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 584 EFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999988864 448889999999999999999999999886544444444444455566778899999888877653
No 121
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=0.00091 Score=63.44 Aligned_cols=352 Identities=13% Similarity=0.099 Sum_probs=212.8
Q ss_pred hcCCCCHHHHHHHhhccccCCCCcC-CHHHHHHHHHHhh--hCHHHHHHHHHHhccCCCCCCC-HHHHHHHHHHHHcCCC
Q 010215 74 VHVGSSEDEVFQSLKQDHVCNAIQP-SHYLVNKLIHRFK--DDWKSALGIFRWAGSCPGYEHS-SEIYEMMVDILGKVRQ 149 (515)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~g~~p-~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~ 149 (515)
+..++...++---...- .+.| |...|+.-..+++ +++..|+.--.... .+.|+ +..|+-...++.-.|+
T Consensus 13 ~s~~d~~~ai~~~t~ai----~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~---~l~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAI----MLSPTNHVLYSNRSAAYASLGSYEKALKDATKTR---RLNPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred cccccHHHHHHHHHHHH----ccCCCccchhcchHHHHHHHhhHHHHHHHHHHHH---hcCCchhhHHHHhHHHHHhccc
Confidence 45555555542222222 3333 5666666655555 46666665555443 33344 5789999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH------HHHhhCC---CCCCHHHHHHHHHHHHHc----
Q 010215 150 MDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTF------DELGTFG---LEKNTETMNLLLDTLCKE---- 216 (515)
Q Consensus 150 ~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~------~~m~~~g---~~~~~~~~~~ll~~~~~~---- 216 (515)
+++|+.-|.+-.+.++.+...+..+..++.... ++.+.| ..+.... .......|..++..+-+.
T Consensus 86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred HHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 999999999999999988888877777762110 111111 1111000 000111222222222111
Q ss_pred ------CCHHHHHHHHHHh------hc-------CCCC----------------------ChhhHHHHHHHHHccCChhH
Q 010215 217 ------GKVELARSVFLEL------KS-------CIPP----------------------NAHTFNIFIHGWCKINRVDE 255 (515)
Q Consensus 217 ------~~~~~a~~~~~~~------~~-------~~~~----------------------~~~~~~~li~~~~~~g~~~~ 255 (515)
..+..+...+... .. ...| -..-.-.+.++..+..+++.
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 0111111111110 00 0111 01113456667777788888
Q ss_pred HHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHHhcCCHHHHHH
Q 010215 256 AQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTT-------VMSYLAKSGDFEEAIR 328 (515)
Q Consensus 256 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-------li~~~~~~g~~~~a~~ 328 (515)
|.+-+....+.. -+..-++....+|...|.+.+++.......+.|.. ...-|+. +..+|.+.++++.++.
T Consensus 243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~ 319 (539)
T KOG0548|consen 243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIK 319 (539)
T ss_pred HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence 888888877764 35555667777888888888887777776665533 2222333 3345666778888888
Q ss_pred HHHHHHhcCCCCCHHHH-------------------------HHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHH
Q 010215 329 ITEKMKIVGSKPDSRFF-------------------------NCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNT 383 (515)
Q Consensus 329 ~~~~~~~~~~~~~~~~~-------------------------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 383 (515)
.|.+.......|+...- ..-...+.+.|++..|...|. ++.... +-|...|..
T Consensus 320 ~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt-eAIkr~-P~Da~lYsN 397 (539)
T KOG0548|consen 320 YYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYT-EAIKRD-PEDARLYSN 397 (539)
T ss_pred HHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHH-HHHhcC-CchhHHHHH
Confidence 88887654434433221 112345678899999999999 665554 447889999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010215 384 MITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVN 443 (515)
Q Consensus 384 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 443 (515)
-..+|.+.|.+..|++-.+..++.. ++....|.--..++....++++|+ +.|.+..+
T Consensus 398 RAac~~kL~~~~~aL~Da~~~ieL~--p~~~kgy~RKg~al~~mk~ydkAl-eay~eale 454 (539)
T KOG0548|consen 398 RAACYLKLGEYPEALKDAKKCIELD--PNFIKAYLRKGAALRAMKEYDKAL-EAYQEALE 454 (539)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHh
Confidence 9999999999999999988888854 344555666666667777889988 88888766
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.54 E-value=4.7e-05 Score=77.65 Aligned_cols=203 Identities=13% Similarity=0.128 Sum_probs=144.8
Q ss_pred HHHcCCChHHHHHHHH---HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCC
Q 010215 143 ILGKVRQMDQMRALLE---EMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEK-NTETMNLLLDTLCKEGK 218 (515)
Q Consensus 143 ~~~~~g~~~~A~~~~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~ 218 (515)
...+.|.+..+..-+- ...+..+.+..++..|.....+.|.+++|+.+++...+. .| +......+...+.+.++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~ 135 (694)
T PRK15179 58 VLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQG 135 (694)
T ss_pred HHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhcc
Confidence 3344444444433333 334455667888888899999999999999999999885 45 45666778888999999
Q ss_pred HHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 010215 219 VELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEM 298 (515)
Q Consensus 219 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 298 (515)
+++|....++.....|.+......+..++.+.|++++|..+|+++...+ +-+..++..+..++-..|+.++|...|+..
T Consensus 136 ~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 136 IEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999777778888899999999999999999999999998743 334778888888899999999999999988
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHHhc
Q 010215 299 QAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIV----GSKPDSRFFNCLIYTLGRA 355 (515)
Q Consensus 299 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~ 355 (515)
.+. ..|....|+..+ +++..-...++.+.-. |.+....+...+|.-|.+.
T Consensus 215 ~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 215 LDA-IGDGARKLTRRL------VDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHh-hCcchHHHHHHH------HHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 765 233445555444 3334445555555433 2233334445555555443
No 123
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.52 E-value=0.001 Score=63.08 Aligned_cols=130 Identities=9% Similarity=0.055 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 010215 379 STFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKP-NVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLV 457 (515)
Q Consensus 379 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~l 457 (515)
.+|...+..-.+..-.+.|..+|.++.+.+ ..+ +...+++++.-+| .++..-|. ++|+.=.+++|- ++.--...
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~-r~~hhVfVa~A~mEy~c-skD~~~Af-rIFeLGLkkf~d--~p~yv~~Y 441 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDK-RTRHHVFVAAALMEYYC-SKDKETAF-RIFELGLKKFGD--SPEYVLKY 441 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhcc-CCcchhhHHHHHHHHHh-cCChhHHH-HHHHHHHHhcCC--ChHHHHHH
Confidence 456667777777777888999999998877 444 6667777776555 45666777 888877765553 33344567
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010215 458 IHGLCRANKCEWAYLLFKEMIGHDITPRY--QTCRLILDEVKQKHMYDAAEKIEAVMK 513 (515)
Q Consensus 458 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~ 513 (515)
++.+...|+-..|..+|++.+..++.|+. .+|..+|.-=..-|+...+.++-+.+.
T Consensus 442 ldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 442 LDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 78888888888899999998887666654 578888887788888888888877653
No 124
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.50 E-value=4.7e-05 Score=78.51 Aligned_cols=220 Identities=12% Similarity=0.123 Sum_probs=112.9
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---------
Q 010215 132 HSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKN--------- 202 (515)
Q Consensus 132 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--------- 202 (515)
.+...+..|++.|-..+++++|.++.+...+..+.....+..+...+.+.++.+++..+ .+... +..+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve~~ 105 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVEHI 105 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-cccccchhHHHHH
Confidence 35677888888888888888888888877777776666655555577777776665555 22221 0111
Q ss_pred ----------HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccH
Q 010215 203 ----------TETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCV 272 (515)
Q Consensus 203 ----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 272 (515)
...+-.+..+|-+.|+.+++..+++++..-.+.|+.+.|.+...|+.. ++++|.+++.+....
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~------ 178 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR------ 178 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH------
Confidence 133344444455555555555555553333344555555555555555 555555555444432
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHH
Q 010215 273 ISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIV-GSKPDSRFFNCLIYT 351 (515)
Q Consensus 273 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~ 351 (515)
+...+++.++.+++.++.... | .+.+.-.++.+.+... |..--..++-.+-..
T Consensus 179 ---------~i~~kq~~~~~e~W~k~~~~~--~---------------~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~ 232 (906)
T PRK14720 179 ---------FIKKKQYVGIEEIWSKLVHYN--S---------------DDFDFFLRIERKVLGHREFTRLVGLLEDLYEP 232 (906)
T ss_pred ---------HHhhhcchHHHHHHHHHHhcC--c---------------ccchHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 223334444444444443321 1 1122222222222221 222223344445555
Q ss_pred HHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHH
Q 010215 352 LGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFS 389 (515)
Q Consensus 352 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 389 (515)
|-..++++++..+++ .+.+.... |.....-++.+|.
T Consensus 233 y~~~~~~~~~i~iLK-~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 233 YKALEDWDEVIYILK-KILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HhhhhhhhHHHHHHH-HHHhcCCc-chhhHHHHHHHHH
Confidence 666666677777766 55443322 4445555555554
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.49 E-value=9.7e-06 Score=82.53 Aligned_cols=148 Identities=11% Similarity=0.052 Sum_probs=129.0
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 010215 129 GYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNL 208 (515)
Q Consensus 129 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 208 (515)
.++.++..+-.|..+....|.+++|..+++...+..|.+..+...++..+.+.+++++|+..+++..... +-+......
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999999999999864 346677788
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHH
Q 010215 209 LLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTI 278 (515)
Q Consensus 209 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 278 (515)
+..++...|++++|..+|+++....+.+..++..+...+.+.|+.++|...|++..+.. .+....|+..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~ 228 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR 228 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence 88899999999999999999766666778999999999999999999999999987652 2344444443
No 126
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.48 E-value=8.6e-06 Score=69.95 Aligned_cols=126 Identities=10% Similarity=0.064 Sum_probs=104.9
Q ss_pred cCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH-HHcCC--HHHH
Q 010215 146 KVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTL-CKEGK--VELA 222 (515)
Q Consensus 146 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~-~~~~~--~~~a 222 (515)
..++.+++...++...+.++.+...+..+...|...|++++|+..|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 36777888888888888899999999999999999999999999999998864 34777787777764 66676 5899
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHh
Q 010215 223 RSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVI 273 (515)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 273 (515)
.+++++.....+.+..++..+...+.+.|++++|...++++.+.. +|+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~ 179 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVN 179 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcc
Confidence 999999777778888999999999999999999999999998764 44443
No 127
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.46 E-value=1.1e-05 Score=65.52 Aligned_cols=104 Identities=9% Similarity=-0.062 Sum_probs=62.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 010215 137 YEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKE 216 (515)
Q Consensus 137 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 216 (515)
+..+...+...|++++|...|+.....++.+..++..+...+.+.|++++|+..|+...... +.+...+..+..++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHc
Confidence 33445555666666666666666666666666666666666666666666666666666543 33555666666666666
Q ss_pred CCHHHHHHHHHHhhcCCCCChhhHH
Q 010215 217 GKVELARSVFLELKSCIPPNAHTFN 241 (515)
Q Consensus 217 ~~~~~a~~~~~~~~~~~~~~~~~~~ 241 (515)
|+.++|...|+......|.+...+.
T Consensus 106 g~~~eAi~~~~~Al~~~p~~~~~~~ 130 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYADASWSE 130 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHH
Confidence 6666666666664433344444443
No 128
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=0.00019 Score=61.30 Aligned_cols=187 Identities=10% Similarity=0.045 Sum_probs=112.8
Q ss_pred CHHHHHHHHHHhc--cCCC-CCCCH-HHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010215 113 DWKSALGIFRWAG--SCPG-YEHSS-EIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAV 188 (515)
Q Consensus 113 ~~~~a~~~~~~~~--~~~~-~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 188 (515)
++++.++++.++. ...| ..++. .+|..++-+...+|+.+.|...++.+..+.+.+......-.-.+-..|++++|+
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~ 106 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAI 106 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHH
Confidence 4555555555543 1233 34444 335555556666777777777777777666656555443344455567777777
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCC
Q 010215 189 RTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGC 268 (515)
Q Consensus 189 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 268 (515)
++++.+.+.+ +.|..++..=+...-..|+--+|++-+....+.+..|...|.-+...|...|++++|.-.++++.-..
T Consensus 107 e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~- 184 (289)
T KOG3060|consen 107 EYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ- 184 (289)
T ss_pred HHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-
Confidence 7777777765 44666666555556666666667766666555667777777777777777777777777777776542
Q ss_pred CccHhHHHHHHHHHHhcC---ChhHHHHHHHHHHHC
Q 010215 269 HPCVISYSTIIQSYCRQY---NFSKVYELLDEMQAQ 301 (515)
Q Consensus 269 ~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 301 (515)
|.+...+..+...+.-.| +...|.++|.+..+.
T Consensus 185 P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 185 PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 223334444444443333 344566666666554
No 129
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=0.002 Score=61.94 Aligned_cols=354 Identities=14% Similarity=0.103 Sum_probs=192.3
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH--HHHH
Q 010215 135 EIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNL--LLDT 212 (515)
Q Consensus 135 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~--ll~~ 212 (515)
...-+=++.+.+.|++++|.+....+....+.+..++..-+-++.+.+++++|+.+.+.-.. ..+++. +=.+
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKA 86 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKA 86 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHH
Confidence 34445578899999999999999999999888889988888999999999999966544221 112222 2344
Q ss_pred HH--HcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccH------------------
Q 010215 213 LC--KEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCV------------------ 272 (515)
Q Consensus 213 ~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~------------------ 272 (515)
|| +.+..++|...++... +.+..+...-...+.+.|++++|.++|+.+.+.+.. +.
T Consensus 87 Yc~Yrlnk~Dealk~~~~~~---~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d~d~~~r~nl~a~~a~l~~~ 162 (652)
T KOG2376|consen 87 YCEYRLNKLDEALKTLKGLD---RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-DQDEERRANLLAVAAALQVQ 162 (652)
T ss_pred HHHHHcccHHHHHHHHhccc---ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHhhhHH
Confidence 44 6789999999887332 234456777778899999999999999999876521 11
Q ss_pred ----------hHHHHHH---HHHHhcCChhHHHHHHHHHHHCC-------CCCCHH-------HHHHHHHHHHhcCCHHH
Q 010215 273 ----------ISYSTII---QSYCRQYNFSKVYELLDEMQAQG-------CPPNVV-------TYTTVMSYLAKSGDFEE 325 (515)
Q Consensus 273 ----------~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g-------~~~~~~-------~~~~li~~~~~~g~~~~ 325 (515)
.+|..+. ..+...|++.+|+++++...+.+ -.-+.. .-.-+.-.+-..|+.++
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 1222222 23344566666666666652211 010000 11112223445666666
Q ss_pred HHHHHHHHHhcCCCCCHH----HHHHHHHHHHhcCCHH--HHHHHHHhhchhCC----------CCCCHHHHH-HHHHHH
Q 010215 326 AIRITEKMKIVGSKPDSR----FFNCLIYTLGRASRVQ--EAVYVYQVEMPENG----------VAPDTSTFN-TMITMF 388 (515)
Q Consensus 326 a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~--~A~~~~~~~~~~~~----------~~~~~~~~~-~li~~~ 388 (515)
|..++..+++.. .+|.. .-|.|+..- ...++- .+...++ ...... -....+..| .++..|
T Consensus 243 a~~iy~~~i~~~-~~D~~~~Av~~NNLva~~-~d~~~~d~~~l~~k~-~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 243 ASSIYVDIIKRN-PADEPSLAVAVNNLVALS-KDQNYFDGDLLKSKK-SQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred HHHHHHHHHHhc-CCCchHHHHHhcchhhhc-cccccCchHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666654 33321 122222211 111111 1111111 000000 000111111 111111
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHh--cCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 010215 389 SHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFK--TGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANK 466 (515)
Q Consensus 389 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~--~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 466 (515)
.+..+.+.++...... ..|.. .+..++..+.+ .....++. .++....+.+... .....-.++......|+
T Consensus 320 --tnk~~q~r~~~a~lp~---~~p~~-~~~~ll~~~t~~~~~~~~ka~-e~L~~~~~~~p~~-s~~v~L~~aQl~is~gn 391 (652)
T KOG2376|consen 320 --TNKMDQVRELSASLPG---MSPES-LFPILLQEATKVREKKHKKAI-ELLLQFADGHPEK-SKVVLLLRAQLKISQGN 391 (652)
T ss_pred --hhhHHHHHHHHHhCCc---cCchH-HHHHHHHHHHHHHHHHHhhhH-HHHHHHhccCCch-hHHHHHHHHHHHHhcCC
Confidence 2333344444333222 23433 33444443322 22456666 6666665522211 23445566777788899
Q ss_pred HHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010215 467 CEWAYLLFK--------EMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAV 511 (515)
Q Consensus 467 ~~~A~~~~~--------~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 511 (515)
++.|.+++. ...+.+..|.. ...++..+.+.++-+.|..+++.
T Consensus 392 ~~~A~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~ 442 (652)
T KOG2376|consen 392 PEVALEILSLFLESWKSSILEAKHLPGT--VGAIVALYYKIKDNDSASAVLDS 442 (652)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhccCCccHHHHHHH
Confidence 999999988 55554555554 44456666666666666666554
No 130
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=0.00058 Score=58.88 Aligned_cols=81 Identities=19% Similarity=0.171 Sum_probs=38.5
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 010215 282 YCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAK----SGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASR 357 (515)
Q Consensus 282 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 357 (515)
+.+..+.+-|.+.+++|++.. +..|.+-|..++.+ .+.+.+|.-+|++|-+. .+|+..+.+....++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 334444555555555555431 33444444444332 23345555555555442 24455555555555555555
Q ss_pred HHHHHHHHH
Q 010215 358 VQEAVYVYQ 366 (515)
Q Consensus 358 ~~~A~~~~~ 366 (515)
+++|..+++
T Consensus 223 ~eeAe~lL~ 231 (299)
T KOG3081|consen 223 YEEAESLLE 231 (299)
T ss_pred HHHHHHHHH
Confidence 555555555
No 131
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.41 E-value=1.6e-05 Score=64.54 Aligned_cols=92 Identities=11% Similarity=-0.140 Sum_probs=54.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCh
Q 010215 174 VMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRV 253 (515)
Q Consensus 174 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 253 (515)
+...+.+.|++++|...|+...... +.+...+..+..++...|++++|...|+......|.+...+..+..++.+.|++
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 3455566666666666666665542 335555566666666666666666666664444555566666666666666666
Q ss_pred hHHHHHHHHHHhC
Q 010215 254 DEAQWTIQEMKGH 266 (515)
Q Consensus 254 ~~A~~~~~~~~~~ 266 (515)
++|...|+.....
T Consensus 109 ~eAi~~~~~Al~~ 121 (144)
T PRK15359 109 GLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666665554
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.41 E-value=1.6e-05 Score=64.11 Aligned_cols=109 Identities=12% Similarity=0.082 Sum_probs=57.0
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 010215 157 LEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPN 236 (515)
Q Consensus 157 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 236 (515)
|+.....++.+...+..+...+.+.|++++|.+.|+.+...+ +.+...+..+...+...|++++|...++......+.+
T Consensus 6 ~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 6 LKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred HHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 334444444444445555555555555555555555554432 2344555555555555555555555555543334445
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 010215 237 AHTFNIFIHGWCKINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 237 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 266 (515)
...+..+...+...|++++|...|+...+.
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555555555555555555555555555543
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.40 E-value=0.0006 Score=63.99 Aligned_cols=117 Identities=15% Similarity=0.056 Sum_probs=61.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhH
Q 010215 176 RRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDE 255 (515)
Q Consensus 176 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 255 (515)
..+...|.+++|+..++.+... .+-|+.........+.+.|+.++|.+.++.+....|.....+-.+..+|.+.|++.+
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 3444455555555555555543 123444444455555555555555555555444444444555555555555555555
Q ss_pred HHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHH
Q 010215 256 AQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYEL 294 (515)
Q Consensus 256 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 294 (515)
|..+++...... +-|...|..|..+|...|+..++...
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A 430 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLA 430 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHH
Confidence 555555554432 33555555555555555555555433
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.31 E-value=0.00038 Score=65.28 Aligned_cols=139 Identities=18% Similarity=0.115 Sum_probs=75.1
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH
Q 010215 246 GWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPN-VVTYTTVMSYLAKSGDFE 324 (515)
Q Consensus 246 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~ 324 (515)
.+...|++++|+..++.+...- +-|...+......+...++.++|.+.++.+... .|+ ....-.+..++.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 3444566666666666655441 223444444455556666666666666665554 333 334444555566666666
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010215 325 EAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEM 404 (515)
Q Consensus 325 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 404 (515)
+|+.+++...... +.|+..|..|..+|...|+..++..-.. .+|...|++++|...+...
T Consensus 392 eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A-------------------E~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 392 EAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA-------------------EGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred HHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH-------------------HHHHhCCCHHHHHHHHHHH
Confidence 6666666555543 4555566666666666666555544443 1233455666666666555
Q ss_pred HhC
Q 010215 405 NKL 407 (515)
Q Consensus 405 ~~~ 407 (515)
.+.
T Consensus 452 ~~~ 454 (484)
T COG4783 452 SQQ 454 (484)
T ss_pred HHh
Confidence 553
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=0.00079 Score=57.65 Aligned_cols=185 Identities=15% Similarity=0.064 Sum_probs=113.9
Q ss_pred ChHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 010215 149 QMDQMRALLEEMSK------GHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELA 222 (515)
Q Consensus 149 ~~~~A~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a 222 (515)
+.++..+++.++.. -+..-|..+..++-+....|+.+.|...++.+... ++-+...-..-.-.+-..|++++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhH
Confidence 44555555555532 12345666666677777777777888777777664 222222222122234456777778
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 010215 223 RSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQG 302 (515)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 302 (515)
.++++.+....|.|..++---+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-..
T Consensus 106 ~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~ 184 (289)
T KOG3060|consen 106 IEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ 184 (289)
T ss_pred HHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence 88887766666777777776666666667766777766666654 34577778778788887888888777777776542
Q ss_pred CCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhc
Q 010215 303 CPPNVVTYTTVMSYLAKSG---DFEEAIRITEKMKIV 336 (515)
Q Consensus 303 ~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~ 336 (515)
+.+.-.+..+...+.-.| +...+.+.|.+..+.
T Consensus 185 -P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 185 -PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred -CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 223444444544444333 455667777776654
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.28 E-value=4.2e-05 Score=61.61 Aligned_cols=97 Identities=14% Similarity=0.030 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHH
Q 010215 204 ETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYC 283 (515)
Q Consensus 204 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 283 (515)
.....+...+...|++++|.+.++.+....+.+...+..+...+.+.|++++|...+++..+.+ +.+...+..+...+.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 3444555556666666666666666544445556666666666666666666666666655543 334555555566666
Q ss_pred hcCChhHHHHHHHHHHHC
Q 010215 284 RQYNFSKVYELLDEMQAQ 301 (515)
Q Consensus 284 ~~g~~~~A~~~~~~m~~~ 301 (515)
..|++++|++.|+...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666665554
No 137
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.23 E-value=0.0084 Score=60.64 Aligned_cols=205 Identities=8% Similarity=0.026 Sum_probs=121.7
Q ss_pred CCcCCHHHHHHHHHHhhhCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHH
Q 010215 95 AIQPSHYLVNKLIHRFKDDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKV 174 (515)
Q Consensus 95 g~~p~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 174 (515)
+-.|-...+.++...-.+..++|..+++...... ..|..+...+-..|.+.|+.++|..+++.....+|. ..-+..+
T Consensus 40 Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~l 116 (932)
T KOG2053|consen 40 PNALYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHL 116 (932)
T ss_pred CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHH
Confidence 3333333333333333456667777777653222 237888888888888889999999999888887777 6666677
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-C---------HHHHHHHHHHh-hcC-CCCChhhHHH
Q 010215 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEG-K---------VELARSVFLEL-KSC-IPPNAHTFNI 242 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-~---------~~~a~~~~~~~-~~~-~~~~~~~~~~ 242 (515)
..+|++.+.+.+-.+.=-++.+. ++-+...+=+++......- . ...|.+.++.+ ..+ -..+..-...
T Consensus 117 FmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~L 195 (932)
T KOG2053|consen 117 FMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIIL 195 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHH
Confidence 78888888776543333333331 2334444444555444321 1 23455555553 222 1112222223
Q ss_pred HHHHHHccCChhHHHHHH-HHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 010215 243 FIHGWCKINRVDEAQWTI-QEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGC 303 (515)
Q Consensus 243 li~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 303 (515)
-...+...|++++|++++ ....+.-...+...-+.-+..+...++|.+..++-.++...|.
T Consensus 196 yl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 196 YLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 334555678888888888 3444433333444455667778888888888888888887753
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.19 E-value=0.00016 Score=58.94 Aligned_cols=125 Identities=14% Similarity=0.131 Sum_probs=72.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHH
Q 010215 136 IYEMMVDILGKVRQMDQMRALLEEMSKGHIVT---LNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKN--TETMNLLL 210 (515)
Q Consensus 136 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~ll 210 (515)
.|..++..+. .++...+...++.+...++.+ ..+...+...+...|++++|...|+........|+ ......+.
T Consensus 14 ~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 4444555553 667777777777776665544 23333455666777777777777777766542222 12333455
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHH
Q 010215 211 DTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQE 262 (515)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 262 (515)
..+...|++++|+..++.+.. .+.....+....+.|.+.|++++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~-~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPD-EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccC-cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666777777766655322 223344555566666666666666666654
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.14 E-value=9.2e-05 Score=69.88 Aligned_cols=121 Identities=17% Similarity=0.208 Sum_probs=56.1
Q ss_pred HHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 010215 139 MMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGK 218 (515)
Q Consensus 139 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 218 (515)
.|+..+...++++.|..+|+++.+.++. ....+++.+...++-.+|++++.+..+.. +.+...+......+.+.++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 3444444445555555555555544422 11223444444455555555555544331 2234444444444445555
Q ss_pred HHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHH
Q 010215 219 VELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEM 263 (515)
Q Consensus 219 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 263 (515)
.+.|+++.++.....|.+-.+|..|..+|.+.|++++|+..++.+
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 555555555444334444445555555555555555555444444
No 140
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.12 E-value=5.4e-06 Score=48.68 Aligned_cols=34 Identities=47% Similarity=0.782 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 010215 453 TYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRY 486 (515)
Q Consensus 453 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 486 (515)
+|+++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6899999999999999999999999999998873
No 141
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.11 E-value=0.015 Score=58.96 Aligned_cols=222 Identities=14% Similarity=0.094 Sum_probs=161.3
Q ss_pred hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010215 112 DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTF 191 (515)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 191 (515)
+++..|+.....+.++++-.+-..++.++. +.+.|+.++|..+++........+..++..+-.+|...++.++|..+|
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHH
Confidence 478889999998876665444444444443 467899999999999887766678888888899999999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCC----------hhHHHHHHH
Q 010215 192 DELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINR----------VDEAQWTIQ 261 (515)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~ 261 (515)
++.... -|+......+..+|.+.+++.+-.++--++.+.+|.+...+-++++.+.+.-. ..-|.+.++
T Consensus 101 e~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 101 ERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred HHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHH
Confidence 999874 67788888889999999988776666555656677788777777777765421 224556666
Q ss_pred HHHhCC-CCccHhHHHHHHHHHHhcCChhHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010215 262 EMKGHG-CHPCVISYSTIIQSYCRQYNFSKVYELLD-EMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVG 337 (515)
Q Consensus 262 ~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 337 (515)
.+.+.+ -.-+..-...-...+...|++++|++++. ...+.-...+...-+.-+..+...+++.+..++-.++...|
T Consensus 179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 666553 11122222222344556889999999994 34443334455555667788889999999999999999886
No 142
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.10 E-value=5.5e-06 Score=48.63 Aligned_cols=33 Identities=30% Similarity=0.661 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 010215 274 SYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPN 306 (515)
Q Consensus 274 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 306 (515)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.06 E-value=0.00028 Score=57.48 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=10.0
Q ss_pred HHHHccCChhHHHHHHHHHHhC
Q 010215 245 HGWCKINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 245 ~~~~~~g~~~~A~~~~~~~~~~ 266 (515)
..+...|++++|...|+.....
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~ 77 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALAN 77 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhh
Confidence 3444444444444444444443
No 144
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.05 E-value=8e-06 Score=47.54 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 010215 452 TTYTLVIHGLCRANKCEWAYLLFKEMIGHDITP 484 (515)
Q Consensus 452 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 484 (515)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888776
No 145
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.02 E-value=0.00023 Score=67.24 Aligned_cols=126 Identities=10% Similarity=0.088 Sum_probs=94.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc
Q 010215 170 TIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCK 249 (515)
Q Consensus 170 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 249 (515)
....++..+...++++.|+++|+++.+.. |+. ...+++.+...++-.+|.+++.+.....|.+..........+.+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 34456777777888899999998888753 543 34477777777888888888888555566677777777788888
Q ss_pred cCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010215 250 INRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQA 300 (515)
Q Consensus 250 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 300 (515)
.++++.|+.+.+++.... +-+-.+|..|..+|.+.|+++.|+-.++.+.-
T Consensus 247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 888888888888888763 22445888888888888888888888776653
No 146
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.00 E-value=1.1e-05 Score=46.90 Aligned_cols=31 Identities=23% Similarity=0.502 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 010215 274 SYSTIIQSYCRQYNFSKVYELLDEMQAQGCP 304 (515)
Q Consensus 274 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 304 (515)
+|+.++.+|++.|+++.|.++|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444443
No 147
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.00 E-value=0.0055 Score=54.53 Aligned_cols=184 Identities=9% Similarity=0.026 Sum_probs=103.8
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 010215 133 SSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNT---IAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLL 209 (515)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 209 (515)
++..+-.....+.+.|++++|.+.|+++....+.+..+ ...++.++.+.+++++|...|++..+....-....+...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 44444445555667899999999999998877754433 356778889999999999999998875322222233333
Q ss_pred HHHHHH--cC---------------CHH---HHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCC
Q 010215 210 LDTLCK--EG---------------KVE---LARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCH 269 (515)
Q Consensus 210 l~~~~~--~~---------------~~~---~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 269 (515)
+.+.+. .+ +.. .|...|+. ++.-|=...-..+|...+..+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~--------------li~~yP~S~ya~~A~~rl~~l~~~--- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSK--------------LVRGYPNSQYTTDATKRLVFLKDR--- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHH--------------HHHHCcCChhHHHHHHHHHHHHHH---
Confidence 333321 11 111 22233333 222222233344444444444321
Q ss_pred ccHhHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010215 270 PCVISYSTIIQSYCRQYNFSKVYELLDEMQAQ--GCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMK 334 (515)
Q Consensus 270 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 334 (515)
=...--.+...|.+.|.+..|+.-++.+.+. +.+....+...++.+|.+.|..++|.++...+.
T Consensus 174 -la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 -LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0111123455677777777777777777653 223344556666777777777777776665543
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.00 E-value=0.00026 Score=55.44 Aligned_cols=104 Identities=14% Similarity=0.098 Sum_probs=57.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CCHHHHHHHH
Q 010215 136 IYEMMVDILGKVRQMDQMRALLEEMSKGHIVT---LNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLE--KNTETMNLLL 210 (515)
Q Consensus 136 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~ll 210 (515)
++..++..+.+.|++++|.+.|+.+...++.+ ..+...+...+.+.|++++|.+.|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 44455555666666666666666665544322 344445566666666666666666666543211 1133455555
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCChhh
Q 010215 211 DTLCKEGKVELARSVFLELKSCIPPNAHT 239 (515)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 239 (515)
.++...|+.++|.+.++++....|.+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 55666666666666666654444444433
No 149
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.99 E-value=0.00016 Score=65.94 Aligned_cols=131 Identities=13% Similarity=0.115 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010215 135 EIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSG-AGQWEDAVRTFDELGTFGLEKNTETMNLLLDTL 213 (515)
Q Consensus 135 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 213 (515)
.+|..+++..-+.+..+.|+.+|.+..+....++..|...+..-.+ .++.+.|.++|+...+. +..+...|...++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 4677777777777778888888888876666677777665555333 56666688888887765 455677777777888
Q ss_pred HHcCCHHHHHHHHHHhhcCCCCCh---hhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 010215 214 CKEGKVELARSVFLELKSCIPPNA---HTFNIFIHGWCKINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 266 (515)
...|+.+.|..+|++....++++. ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888554444433 46777777777777777777777777653
No 150
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.96 E-value=0.00018 Score=68.19 Aligned_cols=120 Identities=14% Similarity=0.083 Sum_probs=64.8
Q ss_pred CccHhHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 010215 269 HPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQ--GCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFN 346 (515)
Q Consensus 269 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 346 (515)
+.+......+++.+....+.+.+..++.+.... ....-..|..++++.|.+.|..+.+..+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 344555555555555555566666666555543 111122344466666666666666666666666666666666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHH
Q 010215 347 CLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFS 389 (515)
Q Consensus 347 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 389 (515)
.|++.+.+.|++..|.++.. .|...+...+..|+...+.+|.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~-~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVAT-EMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHHhhcccHHHHHHHHH-HHHHhhccCCchHHHHHHHHHH
Confidence 66666666666666666665 4433333344444444443333
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.90 E-value=0.00026 Score=52.44 Aligned_cols=89 Identities=15% Similarity=0.154 Sum_probs=40.6
Q ss_pred HHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 010215 139 MMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGK 218 (515)
Q Consensus 139 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 218 (515)
.+...+...|++++|...|+.+.+..+.+...+..+...+...|++++|.+.|+...+.. +.+..++..+...+...|+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 334444445555555555555544444444444444444444555555555554444432 2222334444444444444
Q ss_pred HHHHHHHHHH
Q 010215 219 VELARSVFLE 228 (515)
Q Consensus 219 ~~~a~~~~~~ 228 (515)
.+.|...+..
T Consensus 84 ~~~a~~~~~~ 93 (100)
T cd00189 84 YEEALEAYEK 93 (100)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 152
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.87 E-value=0.00021 Score=67.84 Aligned_cols=102 Identities=13% Similarity=0.170 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhC--CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHh
Q 010215 339 KPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPEN--GVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQT 416 (515)
Q Consensus 339 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~ 416 (515)
+.+......+++.+....+.+.+..++. ..... ....-..|..++|+.|...|..+++++++..=...| +-||..+
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~-k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yG-iF~D~~s 140 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLY-KFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYG-IFPDNFS 140 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHH-HHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcc-cCCChhh
Confidence 3444444444554444444555544444 22221 111112233455555555555555555555555555 5555555
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010215 417 FHPLLKSCFKTGKTDECLSQLLDDMVN 443 (515)
Q Consensus 417 ~~~ll~~~~~~g~~~~A~~~~~~~~~~ 443 (515)
++.|++.+.+.|++..|. ++...|..
T Consensus 141 ~n~Lmd~fl~~~~~~~A~-~V~~~~~l 166 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAA-KVATEMML 166 (429)
T ss_pred HHHHHHHHhhcccHHHHH-HHHHHHHH
Confidence 555555555555555555 44444443
No 153
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.78 E-value=0.0029 Score=58.08 Aligned_cols=18 Identities=11% Similarity=0.198 Sum_probs=8.6
Q ss_pred HHHhcCChhHHHHHHHHH
Q 010215 281 SYCRQYNFSKVYELLDEM 298 (515)
Q Consensus 281 ~~~~~g~~~~A~~~~~~m 298 (515)
.|-..|++++|.+.|.+.
T Consensus 44 ~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 44 CFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHTT-CHHHHHHHHHH
T ss_pred HHHHHhccchhHHHHHHH
Confidence 344455555555555443
No 154
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.76 E-value=3.7e-05 Score=43.54 Aligned_cols=27 Identities=33% Similarity=0.824 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC
Q 010215 275 YSTIIQSYCRQYNFSKVYELLDEMQAQ 301 (515)
Q Consensus 275 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 301 (515)
|+.++++|++.|++++|.++|++|.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 444444444444444444444444443
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.75 E-value=0.00051 Score=50.83 Aligned_cols=91 Identities=16% Similarity=0.205 Sum_probs=48.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCh
Q 010215 174 VMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRV 253 (515)
Q Consensus 174 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 253 (515)
+...+...|++++|+..+++..+.. +.+...+..+...+...+++++|.+.++......+.+..++..+...+...|++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 3455555666666666666655432 223344455555555556666666665554333344444555555555555555
Q ss_pred hHHHHHHHHHHh
Q 010215 254 DEAQWTIQEMKG 265 (515)
Q Consensus 254 ~~A~~~~~~~~~ 265 (515)
++|...+....+
T Consensus 85 ~~a~~~~~~~~~ 96 (100)
T cd00189 85 EEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHc
Confidence 555555555443
No 156
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.72 E-value=0.00064 Score=59.87 Aligned_cols=102 Identities=13% Similarity=0.143 Sum_probs=70.9
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcC
Q 010215 387 MFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD-ITTYTLVIHGLCRAN 465 (515)
Q Consensus 387 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 465 (515)
-+.+.+++++|+..|.+.++.. +-|.+-|..-..+|++.|.++.|+ +-.+..+. +.|. ...|..|..+|...|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AV-kDce~Al~---iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAV-KDCESALS---IDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHH-HHHHHHHh---cChHHHHHHHHHHHHHHccC
Confidence 3456677888888888887743 344556666677788888888877 55555544 3443 557777778888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010215 466 KCEWAYLLFKEMIGHDITPRYQTCRLILDEV 496 (515)
Q Consensus 466 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 496 (515)
++++|++.|++.++ +.|+..+|..=|...
T Consensus 164 k~~~A~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 164 KYEEAIEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred cHHHHHHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 88888888887775 677777777666654
No 157
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.71 E-value=0.00093 Score=49.65 Aligned_cols=75 Identities=19% Similarity=0.344 Sum_probs=39.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 010215 278 IIQSYCRQYNFSKVYELLDEMQAQGC-PPNVVTYTTVMSYLAKSG--------DFEEAIRITEKMKIVGSKPDSRFFNCL 348 (515)
Q Consensus 278 li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~l 348 (515)
.|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444445666666666666666666 566666666665555422 122344455555555555555555555
Q ss_pred HHHH
Q 010215 349 IYTL 352 (515)
Q Consensus 349 i~~~ 352 (515)
+..+
T Consensus 111 l~~L 114 (120)
T PF08579_consen 111 LGSL 114 (120)
T ss_pred HHHH
Confidence 5444
No 158
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.71 E-value=0.0016 Score=50.88 Aligned_cols=96 Identities=10% Similarity=-0.103 Sum_probs=42.1
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCC--CccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHH
Q 010215 241 NIFIHGWCKINRVDEAQWTIQEMKGHGC--HPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCP--PNVVTYTTVMSY 316 (515)
Q Consensus 241 ~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~li~~ 316 (515)
..++..+.+.|++++|.+.|+.+..... +.....+..+...+.+.|++++|.+.|+.+...... ....++..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3344444445555555555555443210 001223334444555555555555555554432111 112334444444
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 010215 317 LAKSGDFEEAIRITEKMKIV 336 (515)
Q Consensus 317 ~~~~g~~~~a~~~~~~~~~~ 336 (515)
+.+.|+.++|.+.++++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 45555555555555555444
No 159
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.70 E-value=5.5e-05 Score=42.81 Aligned_cols=30 Identities=37% Similarity=0.591 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010215 453 TYTLVIHGLCRANKCEWAYLLFKEMIGHDI 482 (515)
Q Consensus 453 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 482 (515)
+|+.++++|++.|++++|.+++++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 688888888888888888888888877653
No 160
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.70 E-value=0.00096 Score=49.59 Aligned_cols=78 Identities=19% Similarity=0.280 Sum_probs=63.3
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCC-CccHhHHHHHHHHHHhcC--------ChhHHHHHHHHHHHCCCCCCHHHHHH
Q 010215 242 IFIHGWCKINRVDEAQWTIQEMKGHGC-HPCVISYSTIIQSYCRQY--------NFSKVYELLDEMQAQGCPPNVVTYTT 312 (515)
Q Consensus 242 ~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~~~~~~~~~ 312 (515)
..|.-+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+|+.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345555566889999999999999998 889999999988877643 24467888999999999999999999
Q ss_pred HHHHHHh
Q 010215 313 VMSYLAK 319 (515)
Q Consensus 313 li~~~~~ 319 (515)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 9988765
No 161
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.69 E-value=0.021 Score=52.46 Aligned_cols=124 Identities=14% Similarity=0.133 Sum_probs=54.3
Q ss_pred HHHHHHcc-CChhHHHHHHHHHHhC----CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-----CCHH-HH
Q 010215 243 FIHGWCKI-NRVDEAQWTIQEMKGH----GCHP-CVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCP-----PNVV-TY 310 (515)
Q Consensus 243 li~~~~~~-g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----~~~~-~~ 310 (515)
+...|.+. |++++|.+.|++..+. |-+. -...+..+...+.+.|++++|+++|++....-.. .+.. .|
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 33445555 6666666666655331 1000 1223445555666666666666666665543211 1111 12
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCC--HHHHHHHHHHHHh--cCCHHHHHHHHH
Q 010215 311 TTVMSYLAKSGDFEEAIRITEKMKIV--GSKPD--SRFFNCLIYTLGR--ASRVQEAVYVYQ 366 (515)
Q Consensus 311 ~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~--~~~~~~li~~~~~--~g~~~~A~~~~~ 366 (515)
...+-.+...||+..|.+.+++.... ++..+ ......|+.+|-. ...+++++.-|+
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d 261 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYD 261 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHc
Confidence 22223444456666666666665533 11111 2334444454432 233555555554
No 162
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.63 E-value=0.06 Score=50.57 Aligned_cols=138 Identities=10% Similarity=0.062 Sum_probs=88.1
Q ss_pred hCHHHHHHHHHHhccCCC---CCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010215 112 DDWKSALGIFRWAGSCPG---YEHS-SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDA 187 (515)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~---~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 187 (515)
++..++..+|..+..... +... ....+-++++|.- .+.+.....+.+..+..+.+.-...-..-.+.+.+.+++|
T Consensus 20 ~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~ka 98 (549)
T PF07079_consen 20 KKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKA 98 (549)
T ss_pred hhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHH
Confidence 477889999988853221 1112 2334567777764 4677777777777665553322221123344578889999
Q ss_pred HHHHHHHhhC--CCCC---CHHH---------HHHHHHHHHHcCCHHHHHHHHHHhhc-----CCCCChhhHHHHHHHHH
Q 010215 188 VRTFDELGTF--GLEK---NTET---------MNLLLDTLCKEGKVELARSVFLELKS-----CIPPNAHTFNIFIHGWC 248 (515)
Q Consensus 188 ~~~~~~m~~~--g~~~---~~~~---------~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~li~~~~ 248 (515)
++.+....+. +-.| |... =+..+..+.+.|.+.+++.+++++.. ...-+..+|+.++-++.
T Consensus 99 l~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmls 178 (549)
T PF07079_consen 99 LQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLS 178 (549)
T ss_pred HHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHh
Confidence 9988777654 3232 1111 15567788899999999999988543 34478999999777776
Q ss_pred cc
Q 010215 249 KI 250 (515)
Q Consensus 249 ~~ 250 (515)
+.
T Consensus 179 rS 180 (549)
T PF07079_consen 179 RS 180 (549)
T ss_pred HH
Confidence 53
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.62 E-value=0.0021 Score=61.03 Aligned_cols=97 Identities=9% Similarity=-0.059 Sum_probs=61.6
Q ss_pred HHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 010215 142 DILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVEL 221 (515)
Q Consensus 142 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 221 (515)
..+...|++++|++.|++..+.++.+...+..+..+|.+.|++++|+..++++.+.. +.+...|..+..+|...|++++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 344556677777777777776666666666666667777777777777777766643 2355566666666677777777
Q ss_pred HHHHHHHhhcCCCCChhh
Q 010215 222 ARSVFLELKSCIPPNAHT 239 (515)
Q Consensus 222 a~~~~~~~~~~~~~~~~~ 239 (515)
|+..|++.....+.+...
T Consensus 89 A~~~~~~al~l~P~~~~~ 106 (356)
T PLN03088 89 AKAALEKGASLAPGDSRF 106 (356)
T ss_pred HHHHHHHHHHhCCCCHHH
Confidence 777776644433334333
No 164
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.61 E-value=0.0039 Score=48.18 Aligned_cols=105 Identities=20% Similarity=0.192 Sum_probs=63.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC---ChhhHHHHHHHHH
Q 010215 174 VMRRFSGAGQWEDAVRTFDELGTFGLEKN--TETMNLLLDTLCKEGKVELARSVFLELKSCIPP---NAHTFNIFIHGWC 248 (515)
Q Consensus 174 li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~ 248 (515)
+...+-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++.....|. +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 35566677778888888877777765443 334555666777777777777777774443333 3333344445666
Q ss_pred ccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHH
Q 010215 249 KINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSY 282 (515)
Q Consensus 249 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 282 (515)
..|+.++|.+.+-.... ++...|.--|..|
T Consensus 87 ~~gr~~eAl~~~l~~la----~~~~~y~ra~~~y 116 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA----ETLPRYRRAIRFY 116 (120)
T ss_pred HCCCHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 77777777777665543 2333444444444
No 165
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.60 E-value=0.0013 Score=60.19 Aligned_cols=129 Identities=11% Similarity=0.044 Sum_probs=73.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc
Q 010215 171 IAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDT-LCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCK 249 (515)
Q Consensus 171 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 249 (515)
+..+++...+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+.++.+...|...++.+.+
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 3444566666666777777777776542 2233344433333 2224555557777777544566677777777777777
Q ss_pred cCChhHHHHHHHHHHhCCCCccH---hHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 010215 250 INRVDEAQWTIQEMKGHGCHPCV---ISYSTIIQSYCRQYNFSKVYELLDEMQAQ 301 (515)
Q Consensus 250 ~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 301 (515)
.|+.+.|..+|++.... +.++. ..|...+..=.+.|+.+.+.++.+++.+.
T Consensus 83 ~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 83 LNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp TT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777776654 22222 35666666666666666666666665553
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.60 E-value=0.00014 Score=52.80 Aligned_cols=79 Identities=13% Similarity=0.169 Sum_probs=31.4
Q ss_pred CChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 010215 428 GKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRY-QTCRLILDEVKQKHMYDAAE 506 (515)
Q Consensus 428 g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~ 506 (515)
|+++.|+ .+++++.+..+..++...+-.+..++.+.|++++|.+++++ . +..|+. .....+..++.+.|++++|+
T Consensus 3 ~~y~~Ai-~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~--~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 3 GNYENAI-KYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L--KLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp T-HHHHH-HHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H--THHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHH-HHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h--CCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4444444 44444444221111222333344555555555555555544 1 122222 22222233344555555555
Q ss_pred HHHH
Q 010215 507 KIEA 510 (515)
Q Consensus 507 ~~~~ 510 (515)
+.++
T Consensus 79 ~~l~ 82 (84)
T PF12895_consen 79 KALE 82 (84)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5444
No 167
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.57 E-value=0.0028 Score=50.88 Aligned_cols=89 Identities=9% Similarity=-0.045 Sum_probs=42.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChh
Q 010215 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVD 254 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 254 (515)
...+.+.|++++|.++|+.+.... +-+..-|-.|.-++-..|++++|+..|...-.-.+.|+..+..+..++...|+.+
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVC 120 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHH
Confidence 344444555555555555544432 1233334444444445555555555555533323444555555555555555555
Q ss_pred HHHHHHHHHH
Q 010215 255 EAQWTIQEMK 264 (515)
Q Consensus 255 ~A~~~~~~~~ 264 (515)
.|.+-|+...
T Consensus 121 ~A~~aF~~Ai 130 (157)
T PRK15363 121 YAIKALKAVV 130 (157)
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 168
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.56 E-value=0.0017 Score=52.08 Aligned_cols=94 Identities=7% Similarity=0.051 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 010215 135 EIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLC 214 (515)
Q Consensus 135 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 214 (515)
...-.+...+...|++++|.++|+-+...++.+...+..|..++-..|++++|+..|....... +-|+..+-.+..++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 3444556667789999999999999999999999999999999999999999999999998875 457888888999999
Q ss_pred HcCCHHHHHHHHHHh
Q 010215 215 KEGKVELARSVFLEL 229 (515)
Q Consensus 215 ~~~~~~~a~~~~~~~ 229 (515)
..|+.+.|++.|+..
T Consensus 115 ~lG~~~~A~~aF~~A 129 (157)
T PRK15363 115 ACDNVCYAIKALKAV 129 (157)
T ss_pred HcCCHHHHHHHHHHH
Confidence 999999999999884
No 169
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.55 E-value=0.0061 Score=51.27 Aligned_cols=62 Identities=10% Similarity=-0.042 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010215 135 EIYEMMVDILGKVRQMDQMRALLEEMSKGHIV---TLNTIAKVMRRFSGAGQWEDAVRTFDELGT 196 (515)
Q Consensus 135 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 196 (515)
..+..+...|...|++++|...|++.....+. ....+..+...+.+.|++++|+..+.+..+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444455555555555444332211 123334444444444444444444444443
No 170
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.54 E-value=0.11 Score=51.46 Aligned_cols=175 Identities=10% Similarity=0.069 Sum_probs=100.4
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHhc-CCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 010215 131 EHSSEIYEMMVDILGKVRQMDQMRALLEEMSK-GHI---------VTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLE 200 (515)
Q Consensus 131 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 200 (515)
.|.+..|..|.+.-...-.++.|+..|-+... .++ .+...-.+-+. +--|++++|.++|-+|.++.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhhh-
Confidence 46788999998888888888888888866543 111 11111111122 235889999999988876542
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--CCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHH
Q 010215 201 KNTETMNLLLDTLCKEGKVELARSVFLELKSC--IPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTI 278 (515)
Q Consensus 201 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 278 (515)
.+..+.+.|++-.+.++++.-..+ ...-...|+.+.+.++....+++|.+.|..-... ...
T Consensus 766 --------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~ 828 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQ 828 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhH
Confidence 456677778887777776552221 1223456777777777777777777777654321 123
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010215 279 IQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRIT 330 (515)
Q Consensus 279 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 330 (515)
+.++.+..++++-..+...+. -+....-.+..++.+.|.-++|.+.|
T Consensus 829 ~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHH
Confidence 445555555544443333222 23333444445555555555554443
No 171
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.52 E-value=0.00018 Score=52.30 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=7.5
Q ss_pred HHHHHHccCChhHHHHHHH
Q 010215 243 FIHGWCKINRVDEAQWTIQ 261 (515)
Q Consensus 243 li~~~~~~g~~~~A~~~~~ 261 (515)
+..+|.+.|++++|..+++
T Consensus 31 la~~~~~~~~y~~A~~~~~ 49 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQ 49 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH
Confidence 3333333444444443333
No 172
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.52 E-value=0.0027 Score=60.25 Aligned_cols=92 Identities=12% Similarity=-0.009 Sum_probs=73.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChh
Q 010215 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVD 254 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 254 (515)
...+...|++++|++.|++..+.. +.+...|..+..+|...|++++|+..++++....+.+...|..+..+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 456677888899999988888754 3467777888888888888888888888866666677888888888888888888
Q ss_pred HHHHHHHHHHhCC
Q 010215 255 EAQWTIQEMKGHG 267 (515)
Q Consensus 255 ~A~~~~~~~~~~~ 267 (515)
+|...|++.....
T Consensus 88 eA~~~~~~al~l~ 100 (356)
T PLN03088 88 TAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhC
Confidence 8888888887753
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.50 E-value=0.0037 Score=52.42 Aligned_cols=78 Identities=9% Similarity=0.041 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 010215 171 IAKVMRRFSGAGQWEDAVRTFDELGTFGLEK--NTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWC 248 (515)
Q Consensus 171 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 248 (515)
+..++..+...|++++|+..|++.......+ ...++..+..++...|+.++|+..++......+.....+..+...+.
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 3444555555666666666666665432111 12355555566666666666666666543333333444444444444
No 174
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.47 E-value=0.00056 Score=46.76 Aligned_cols=58 Identities=14% Similarity=0.143 Sum_probs=44.2
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010215 140 MVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTF 197 (515)
Q Consensus 140 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 197 (515)
+...+.+.|++++|.+.|+++.+.++.+..++..+..++.+.|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4456777788888888888888877777778777788888888888888888877653
No 175
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.45 E-value=0.00044 Score=47.81 Aligned_cols=61 Identities=15% Similarity=0.155 Sum_probs=41.3
Q ss_pred HcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 010215 145 GKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMN 207 (515)
Q Consensus 145 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 207 (515)
.+.|++++|.+.|+.+...++.+..+...++.+|.+.|++++|.++++++... .|+...|.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~ 62 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQ 62 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHH
Confidence 35677777777777777777777777777777777777777777777777664 45533333
No 176
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.45 E-value=0.0028 Score=58.17 Aligned_cols=131 Identities=15% Similarity=0.136 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----cCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhc---hhCC-CCCCHH
Q 010215 309 TYTTVMSYLAKSGDFEEAIRITEKMKI----VGS-KPDSRFFNCLIYTLGRASRVQEAVYVYQVEM---PENG-VAPDTS 379 (515)
Q Consensus 309 ~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~-~~~~~~ 379 (515)
+|..+.+.|.-.|++++|+..++.-.. .|- ......+..+..++.-.|+++.|.+.|+... .+.| -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455555666666777777766654332 111 1123345566666666777777776665211 1111 112233
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHh----CCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHH
Q 010215 380 TFNTMITMFSHHGHHEKAFHVLEEMNK----LEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDD 440 (515)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 440 (515)
+..++...|.-..++++|+.++.+-.. .+...-....+.+|..++...|..++|+ .+.+.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl-~fae~ 340 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKAL-YFAEL 340 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHH-HHHHH
Confidence 445566666666667777766655432 1112223445666667777777777766 44433
No 177
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.43 E-value=0.098 Score=48.18 Aligned_cols=125 Identities=13% Similarity=0.135 Sum_probs=65.9
Q ss_pred HHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC-HHhHHHHHHHHHhc
Q 010215 349 IYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPN-VQTFHPLLKSCFKT 427 (515)
Q Consensus 349 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~ 427 (515)
..++.+.|+..++-.+++ .+-+....|+ .+. .|.+..--+.+..-+++..+....+|| ......+..+-...
T Consensus 270 Aralf~d~~~rKg~~ilE-~aWK~ePHP~--ia~----lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda 342 (531)
T COG3898 270 ARALFRDGNLRKGSKILE-TAWKAEPHPD--IAL----LYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDA 342 (531)
T ss_pred HHHHHhccchhhhhhHHH-HHHhcCCChH--HHH----HHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhc
Confidence 356667777777777776 5544433333 222 222222223344444444332224454 34455555666667
Q ss_pred CChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCC
Q 010215 428 GKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCR-ANKCEWAYLLFKEMIGHDITP 484 (515)
Q Consensus 428 g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p 484 (515)
|++..|. .--+... ...|....|..|.+.-.. .|+-.++..++.+.++..-.|
T Consensus 343 ~e~~~AR-a~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 343 GEFSAAR-AKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred cchHHHH-HHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 7776654 3333332 245666667666665433 377777777777776544333
No 178
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.43 E-value=0.0079 Score=50.59 Aligned_cols=116 Identities=11% Similarity=0.055 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 010215 168 LNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKN--TETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIH 245 (515)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 245 (515)
...+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+.+.....+.+...+..+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 33455556666677777777777777665432221 3456666677777777777777777644444555666666666
Q ss_pred HHHccCC--------------hhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCC
Q 010215 246 GWCKINR--------------VDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYN 287 (515)
Q Consensus 246 ~~~~~g~--------------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 287 (515)
.+...|+ +++|.+.+++....+ | ..|..++..+...|+
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~--p--~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA--P--NNYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC--c--hhHHHHHHHHHhcCc
Confidence 6666665 466777777766542 2 224445555444443
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.42 E-value=0.018 Score=57.33 Aligned_cols=134 Identities=10% Similarity=0.029 Sum_probs=68.8
Q ss_pred CCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhc--------CCHHHHHHHHHhh
Q 010215 303 CPPNVVTYTTVMSYLAKS-----GDFEEAIRITEKMKIVGSKPD-SRFFNCLIYTLGRA--------SRVQEAVYVYQVE 368 (515)
Q Consensus 303 ~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~--------g~~~~A~~~~~~~ 368 (515)
.+.+...|...+.+.... ++.+.|..+|++..+. .|+ ...+..+..+|... .++..+.+... .
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~-~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD-N 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-H
Confidence 345666777776664432 2256677777777765 343 33444333322211 11222333332 1
Q ss_pred chhC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010215 369 MPEN-GVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVN 443 (515)
Q Consensus 369 ~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 443 (515)
.... ....+...|.++.......|++++|...++++... .|+...|..+...+...|+.++|. +.+++...
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L---~ps~~a~~~lG~~~~~~G~~~eA~-~~~~~A~~ 481 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL---EMSWLNYVLLGKVYELKGDNRLAA-DAYSTAFN 481 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHh
Confidence 1111 11223445555544455556666666666666663 356666666666666666666666 56655544
No 180
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.39 E-value=0.054 Score=44.44 Aligned_cols=128 Identities=16% Similarity=0.046 Sum_probs=79.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHH
Q 010215 304 PPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNT 383 (515)
Q Consensus 304 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 383 (515)
.|+..--..+..+....|+..+|...|.+....-...|....-.+..+....+++..|...++..|....-..++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 45555566666777777777777777777766555566666666666667777777777777633332211112223344
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHH
Q 010215 384 MITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECL 434 (515)
Q Consensus 384 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 434 (515)
+...+...|.+.+|..-|+.... .-|+...-......+.+.|+.+++-
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~---~ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS---YYPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcchhHHH
Confidence 55667777777777777777777 3466555444455566677666554
No 181
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.37 E-value=0.048 Score=47.22 Aligned_cols=170 Identities=11% Similarity=0.080 Sum_probs=87.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010215 137 YEMMVDILGKVRQMDQMRALLEEMSKGHI---VTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTL 213 (515)
Q Consensus 137 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 213 (515)
+-.....+...|++++|.+.|+.+....+ ....+...++.++.+.|++++|...++++.+.-.......+...+.+.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 33444556678889999999988877544 355667777888888899999998888877642111111222222222
Q ss_pred HHcC----------C---HHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHH
Q 010215 214 CKEG----------K---VELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQ 280 (515)
Q Consensus 214 ~~~~----------~---~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 280 (515)
+... + ..+|... +..++.-|=...-..+|...+..+.+. =...--.+..
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~--------------~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~ 149 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEE--------------FEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIAR 149 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHH--------------HHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHH--------------HHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 2111 1 1122222 233333444444445555544444331 0111122455
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHH
Q 010215 281 SYCRQYNFSKVYELLDEMQAQGCPPN----VVTYTTVMSYLAKSGDFEEA 326 (515)
Q Consensus 281 ~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a 326 (515)
.|.+.|.+..|..-++.+.+. -|+ ..+...++.+|.+.|..+.+
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 667777777777777776664 222 23445566666666666533
No 182
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.36 E-value=0.19 Score=49.93 Aligned_cols=134 Identities=10% Similarity=0.164 Sum_probs=60.8
Q ss_pred CCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010215 147 VRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTF-GLEKNTETMNLLLDTLCKEGKVELARSV 225 (515)
Q Consensus 147 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~ 225 (515)
-|++++|++++-++.+++. .+..+.+.|+|-...++++.--.. .-..-...++.+...++....++.|.+.
T Consensus 747 ~g~feeaek~yld~drrDL--------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL--------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhhh--------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777766655542 134444555555544444321100 0000122344444444444444444444
Q ss_pred HHHh----------------------hcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHH
Q 010215 226 FLEL----------------------KSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYC 283 (515)
Q Consensus 226 ~~~~----------------------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 283 (515)
|..- ...+|.+....-.+.+++...|.-++|.+.|-+-.. | ...+..|.
T Consensus 819 Y~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv 889 (1189)
T KOG2041|consen 819 YSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCV 889 (1189)
T ss_pred HHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHH
Confidence 4331 112344455555555555555555555554433221 1 12234455
Q ss_pred hcCChhHHHHHHHH
Q 010215 284 RQYNFSKVYELLDE 297 (515)
Q Consensus 284 ~~g~~~~A~~~~~~ 297 (515)
..++|.+|.++-+.
T Consensus 890 ~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 890 ELNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555555443
No 183
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.34 E-value=0.0019 Score=54.44 Aligned_cols=88 Identities=14% Similarity=0.237 Sum_probs=52.8
Q ss_pred CChhhHHHHHHHHHc-----cCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhc----------------CChhHHHH
Q 010215 235 PNAHTFNIFIHGWCK-----INRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQ----------------YNFSKVYE 293 (515)
Q Consensus 235 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------g~~~~A~~ 293 (515)
.+..+|..+++.|.+ .|..+=....+..|.+-|+..|..+|+.|++.+=+. .+.+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 344555555555543 355555666666666667666777777666655321 12345666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010215 294 LLDEMQAQGCPPNVVTYTTVMSYLAKSGD 322 (515)
Q Consensus 294 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 322 (515)
++++|...|+-||..++..+++.+.+.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 77777777777777777777766655543
No 184
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.33 E-value=0.11 Score=46.39 Aligned_cols=58 Identities=10% Similarity=0.040 Sum_probs=32.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010215 278 IIQSYCRQYNFSKVYELLDEMQAQGCPPNVVT---YTTVMSYLAKSGDFEEAIRITEKMKIV 336 (515)
Q Consensus 278 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~~~~~ 336 (515)
....+...|++++|++.|+++...-..+ ..+ .-.+..++.+.+++++|...+++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3334455667777777776666542211 111 123445566667777777777666654
No 185
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.31 E-value=0.009 Score=50.05 Aligned_cols=94 Identities=11% Similarity=-0.027 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 010215 133 SSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIV---TLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLL 209 (515)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 209 (515)
....+..+...+...|++++|...|+......+. ...++..+...+...|++++|++.+++..+.. +....++..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 4566778888888899999999999998654332 34577888899999999999999999988752 3345556666
Q ss_pred HHHHH-------HcCCHHHHHHHHH
Q 010215 210 LDTLC-------KEGKVELARSVFL 227 (515)
Q Consensus 210 l~~~~-------~~~~~~~a~~~~~ 227 (515)
...+. ..|+++.|...++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHH
Confidence 66666 5556555444443
No 186
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.30 E-value=0.017 Score=57.48 Aligned_cols=146 Identities=14% Similarity=0.124 Sum_probs=90.6
Q ss_pred cCCCCCHHHHHHHHHHHHh--cC---CHHHHHHHHHhhchhCCCCCC-HHHHHHHHHHHHhCC--------CHHHHHHHH
Q 010215 336 VGSKPDSRFFNCLIYTLGR--AS---RVQEAVYVYQVEMPENGVAPD-TSTFNTMITMFSHHG--------HHEKAFHVL 401 (515)
Q Consensus 336 ~~~~~~~~~~~~li~~~~~--~g---~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g--------~~~~A~~~~ 401 (515)
...+.+...|...+.+... .+ +.+.|..+|+ +..+. .|+ ...|..+..++.... +...+.+..
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle-~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLE-EILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 3346777788887776543 22 2668888888 44442 455 344444444443221 123344444
Q ss_pred HHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010215 402 EEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHD 481 (515)
Q Consensus 402 ~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 481 (515)
.+.........+...|..+.-.....|++++|. ..+++... ..|+...|..+...+...|+.++|.+.+++...
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~-~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~-- 481 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAY-QAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN-- 481 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHH-HHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--
Confidence 443332112344566766666666778888888 88888877 346777888888888888888888888888875
Q ss_pred CCCCHHHHH
Q 010215 482 ITPRYQTCR 490 (515)
Q Consensus 482 ~~p~~~~~~ 490 (515)
+.|...||.
T Consensus 482 L~P~~pt~~ 490 (517)
T PRK10153 482 LRPGENTLY 490 (517)
T ss_pred cCCCCchHH
Confidence 566666653
No 187
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.23 E-value=0.011 Score=53.19 Aligned_cols=100 Identities=14% Similarity=0.102 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHH
Q 010215 135 EIYEMMVDILGKVRQMDQMRALLEEMSKGHIVT---LNTIAKVMRRFSGAGQWEDAVRTFDELGTFG--LEKNTETMNLL 209 (515)
Q Consensus 135 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~l 209 (515)
..|...+..+.+.|++++|...|+.+....|.+ .+++..+...|...|++++|...|..+.+.- -+.....+-.+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 445555555566677777777777777665543 4666667777777777777777777776531 11123344445
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcCCC
Q 010215 210 LDTLCKEGKVELARSVFLELKSCIP 234 (515)
Q Consensus 210 l~~~~~~~~~~~a~~~~~~~~~~~~ 234 (515)
...+...|+.+.|..+|+.+....|
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 5566667777777777776554443
No 188
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.22 E-value=0.18 Score=46.80 Aligned_cols=124 Identities=13% Similarity=0.155 Sum_probs=81.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHH
Q 010215 345 FNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSC 424 (515)
Q Consensus 345 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~ 424 (515)
.+.-|.-+...|+...|.++-. ... -|+..-|...+.+++..++|++-.++-.. . -++.-|..++.+|
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k-~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----k---KsPIGyepFv~~~ 247 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKK-EFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----K---KSPIGYEPFVEAC 247 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHH-HcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C---CCCCChHHHHHHH
Confidence 3444556667788888877776 443 27888888888888888888776664332 1 1236788888888
Q ss_pred HhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010215 425 FKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQ 498 (515)
Q Consensus 425 ~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 498 (515)
.+.|...+|. .++..+ .+..-+..|.+.|++.+|.+...+. -|......+...|..
T Consensus 248 ~~~~~~~eA~-~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~------kd~~~L~~i~~~~~~ 303 (319)
T PF04840_consen 248 LKYGNKKEAS-KYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKE------KDIDLLKQILKRCPG 303 (319)
T ss_pred HHCCCHHHHH-HHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHc------CCHHHHHHHHHHCCC
Confidence 8888888877 665441 1245567788888888887776554 244444444444433
No 189
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.22 E-value=0.0014 Score=45.39 Aligned_cols=64 Identities=11% Similarity=0.136 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhh
Q 010215 133 SSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAG-QWEDAVRTFDELGT 196 (515)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 196 (515)
++.+|..+...+.+.|++++|+..|++..+.++.++.++..+..+|.+.| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45677788888888888888888888888888888888888888888888 68888888877765
No 190
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.051 Score=50.35 Aligned_cols=298 Identities=13% Similarity=0.080 Sum_probs=159.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc
Q 010215 170 TIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCK 249 (515)
Q Consensus 170 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 249 (515)
........+.+..++.+|+..+....+.+ +-+..-|..-...+...|+++++.--.+.-.+--+.......-.-+++..
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLA 129 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhh
Confidence 33444566777777788888887777754 23455555555566666777776655544211111122233333333444
Q ss_pred cCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHH-HHHHhcCCHHHHH
Q 010215 250 INRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGC-PPNVVTYTTVM-SYLAKSGDFEEAI 327 (515)
Q Consensus 250 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li-~~~~~~g~~~~a~ 327 (515)
.++..+|.+.++ +...+ ....++..++....... +|...++..+- ..+.-.|+.+.|.
T Consensus 130 ~~~~i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~ 189 (486)
T KOG0550|consen 130 LSDLIEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQ 189 (486)
T ss_pred hHHHHHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHH
Confidence 444444444443 11111 11222333333222211 23344444443 3445688999998
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHH---HHH----------HHhCC
Q 010215 328 RITEKMKIVGSKPDSRFFNCLIY--TLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTM---ITM----------FSHHG 392 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l---i~~----------~~~~g 392 (515)
++--.+.+.. . ...+...+. ++--.++.+.|...|+ +-.. ..|+...-..+ ... ..+.|
T Consensus 190 ~ea~~ilkld-~--~n~~al~vrg~~~yy~~~~~ka~~hf~-qal~--ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G 263 (486)
T KOG0550|consen 190 SEAIDILKLD-A--TNAEALYVRGLCLYYNDNADKAINHFQ-QALR--LDPDHQKSKSASMMPKKLEVKKERGNDAFKNG 263 (486)
T ss_pred HHHHHHHhcc-c--chhHHHHhcccccccccchHHHHHHHh-hhhc--cChhhhhHHhHhhhHHHHHHHHhhhhhHhhcc
Confidence 8887777643 2 223333333 3345678899999998 4333 34554432222 222 24678
Q ss_pred CHHHHHHHHHHHHhCC--CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 010215 393 HHEKAFHVLEEMNKLE--HCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD-ITTYTLVIHGLCRANKCEW 469 (515)
Q Consensus 393 ~~~~A~~~~~~m~~~~--~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 469 (515)
++..|.+.|.+.+... ...|+...|.....+..+.|+.++|+ .-.+...+ +.+. ...|..-..++.-.+++++
T Consensus 264 ~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eai-sdc~~Al~---iD~syikall~ra~c~l~le~~e~ 339 (486)
T KOG0550|consen 264 NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAI-SDCNEALK---IDSSYIKALLRRANCHLALEKWEE 339 (486)
T ss_pred chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhh-hhhhhhhh---cCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999988732 12334445666666778889999988 66665544 3222 1222223344555678888
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 010215 470 AYLLFKEMIGHDITP-RYQTCRLILDEVKQ 498 (515)
Q Consensus 470 A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~ 498 (515)
|.+-++...+....+ ...++.-...++.+
T Consensus 340 AV~d~~~a~q~~~s~e~r~~l~~A~~aLkk 369 (486)
T KOG0550|consen 340 AVEDYEKAMQLEKDCEIRRTLREAQLALKK 369 (486)
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 888888877643332 23344444444543
No 191
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.19 E-value=0.012 Score=49.66 Aligned_cols=108 Identities=17% Similarity=0.215 Sum_probs=75.6
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCH
Q 010215 304 PPNVVTYTTVMSYLAK-----SGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDT 378 (515)
Q Consensus 304 ~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 378 (515)
..|..+|..+++.|.+ .|..+=....++.|.+-|+.-|..+|+.|++.+=+ |.+ .|..
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~f----------------vp~n 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKF----------------VPRN 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCc----------------cccc
Confidence 4578888888888875 36677777788888888888888888888876543 221 1211
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHH
Q 010215 379 STFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDE 432 (515)
Q Consensus 379 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 432 (515)
... ++..- ...+-+-|++++++|...| +.||..++..++..+.+.+..-.
T Consensus 107 ~fQ-~~F~h--yp~Qq~c~i~lL~qME~~g-V~Pd~Et~~~ll~iFG~~s~p~~ 156 (228)
T PF06239_consen 107 FFQ-AEFMH--YPRQQECAIDLLEQMENNG-VMPDKETEQMLLNIFGRKSHPMK 156 (228)
T ss_pred HHH-HHhcc--CcHHHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHhccccHHHH
Confidence 111 11111 1234567899999999999 99999999999999877776543
No 192
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.18 E-value=0.0011 Score=45.72 Aligned_cols=49 Identities=16% Similarity=0.173 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHh
Q 010215 217 GKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKG 265 (515)
Q Consensus 217 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 265 (515)
|++++|.+.|+.+....|.+..++..+..+|.+.|++++|..+++++..
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444443333333444444444444444444444444444433
No 193
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.18 E-value=0.032 Score=43.17 Aligned_cols=85 Identities=19% Similarity=0.097 Sum_probs=43.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHH
Q 010215 280 QSYCRQYNFSKVYELLDEMQAQGCPPN--VVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPD----SRFFNCLIYTLG 353 (515)
Q Consensus 280 ~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~ 353 (515)
.++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|..++++..... |+ ......+..++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence 344455666666666666665554433 2334445555556666666666666555431 21 111222223445
Q ss_pred hcCCHHHHHHHHH
Q 010215 354 RASRVQEAVYVYQ 366 (515)
Q Consensus 354 ~~g~~~~A~~~~~ 366 (515)
..|+.++|...+-
T Consensus 87 ~~gr~~eAl~~~l 99 (120)
T PF12688_consen 87 NLGRPKEALEWLL 99 (120)
T ss_pred HCCCHHHHHHHHH
Confidence 5566666655554
No 194
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.024 Score=50.51 Aligned_cols=101 Identities=9% Similarity=0.002 Sum_probs=64.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccC---ChhHHHHHHHHHHhCCCCccHhHHH
Q 010215 200 EKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKIN---RVDEAQWTIQEMKGHGCHPCVISYS 276 (515)
Q Consensus 200 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~ 276 (515)
+-|...|-.|...|...|+.+.|...|....+-.++|...+..+..++.... ...++..+|+++.... +-|+.+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 3466667777777777777777777776655555566666666665554432 3446667777766653 33555566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC
Q 010215 277 TIIQSYCRQYNFSKVYELLDEMQAQ 301 (515)
Q Consensus 277 ~li~~~~~~g~~~~A~~~~~~m~~~ 301 (515)
.|...+...|++.+|...|+.|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 6666677777777777777777765
No 195
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.047 Score=47.39 Aligned_cols=143 Identities=12% Similarity=0.062 Sum_probs=101.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH-----
Q 010215 274 SYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCL----- 348 (515)
Q Consensus 274 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l----- 348 (515)
..+.++..+.-.|.+.-...++++..+...+.++.....+.+.-.+.||.+.|...|+...+..-..|..+.+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 455677777778888888888998888766667888888888888999999999999988765434444444443
Q ss_pred HHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHH
Q 010215 349 IYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLL 421 (515)
Q Consensus 349 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll 421 (515)
...|.-.+++..|...+. ++.... ..|...-|.-.-+....|+..+|++.++.|.+ ..|...+-++++
T Consensus 259 a~i~lg~nn~a~a~r~~~-~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~---~~P~~~l~es~~ 326 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFT-EILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ---QDPRHYLHESVL 326 (366)
T ss_pred hhheecccchHHHHHHHh-hccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc---cCCccchhhhHH
Confidence 345566778888888887 554432 22455555555555567899999999999988 457666555444
No 196
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.07 E-value=0.0025 Score=43.49 Aligned_cols=49 Identities=18% Similarity=0.166 Sum_probs=17.9
Q ss_pred HcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHH
Q 010215 215 KEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEM 263 (515)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 263 (515)
..|++++|.+.|+++....|.+...+..+..++...|++++|...|+++
T Consensus 9 ~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 9 QQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333333333333333323333333333333333333333333333333
No 197
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.01 E-value=0.014 Score=45.68 Aligned_cols=50 Identities=14% Similarity=0.150 Sum_probs=36.7
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 010215 410 CKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHG 460 (515)
Q Consensus 410 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~ 460 (515)
..|+..+..+++.+|+..|++..|+ ++++...+.++++.+...|..|+.=
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al-~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSAL-KLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 5677777777777777777777777 7777777777777677777766653
No 198
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.16 Score=44.19 Aligned_cols=153 Identities=10% Similarity=0.078 Sum_probs=106.3
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 010215 289 SKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVE 368 (515)
Q Consensus 289 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 368 (515)
+..++++++-.. ...+.++..+.-.|.+.-...++.++++...+.++...+.|...-.+.|+.+.|...|+ .
T Consensus 166 ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~-~ 237 (366)
T KOG2796|consen 166 ESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQ-D 237 (366)
T ss_pred hhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHH-H
Confidence 445555554332 24455666666778888888999999987777888889999999999999999999998 6
Q ss_pred chhCCCCCCHHHHHHHH-----HHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010215 369 MPENGVAPDTSTFNTMI-----TMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVN 443 (515)
Q Consensus 369 ~~~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 443 (515)
..+..-+.|..+.+.++ ..|.-.+++..|...+.+....+ +.|+...+.-.-...-.|+...|+ +.++.|..
T Consensus 238 vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D--~~~~~a~NnKALcllYlg~l~DAi-K~~e~~~~ 314 (366)
T KOG2796|consen 238 VEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD--PRNAVANNNKALCLLYLGKLKDAL-KQLEAMVQ 314 (366)
T ss_pred HHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC--CCchhhhchHHHHHHHHHHHHHHH-HHHHHHhc
Confidence 66544444444444433 34556778888888888888765 444555554444455678888888 88888876
Q ss_pred cCCCCCCHHHHH
Q 010215 444 KHHLSLDITTYT 455 (515)
Q Consensus 444 ~~~~~p~~~~~~ 455 (515)
..|...+-+
T Consensus 315 ---~~P~~~l~e 323 (366)
T KOG2796|consen 315 ---QDPRHYLHE 323 (366)
T ss_pred ---cCCccchhh
Confidence 345544433
No 199
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.96 E-value=0.018 Score=51.04 Aligned_cols=103 Identities=15% Similarity=0.108 Sum_probs=60.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhH
Q 010215 176 RRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDE 255 (515)
Q Consensus 176 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 255 (515)
.-+.+.+++++|+..|.+.++.. +-|...|..-..+|++.|.++.|++-.+....-.+.-..+|..|..+|...|++++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 44555666666666666666642 23555566666666666666666666555433334445566666666666666666
Q ss_pred HHHHHHHHHhCCCCccHhHHHHHHHH
Q 010215 256 AQWTIQEMKGHGCHPCVISYSTIIQS 281 (515)
Q Consensus 256 A~~~~~~~~~~~~~~~~~~~~~li~~ 281 (515)
|.+.|++..+. .|+-.+|-.=+..
T Consensus 168 A~~aykKaLel--dP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 168 AIEAYKKALEL--DPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHhhhcc--CCCcHHHHHHHHH
Confidence 66666666554 4555555444433
No 200
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.94 E-value=0.17 Score=41.63 Aligned_cols=135 Identities=13% Similarity=0.076 Sum_probs=82.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHH
Q 010215 339 KPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFH 418 (515)
Q Consensus 339 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~ 418 (515)
.|++..--.|..+....|+..+|...|+ +....-..-|......+.++....+++..|...++++-+..+-.-++.+..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~-qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQ-QALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHH-HHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 5666666667777777777777777777 444444445666677777777777777777777777766321111233445
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010215 419 PLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMI 478 (515)
Q Consensus 419 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 478 (515)
.+...+...|+..+|. ..|+...+ .-|+...-.-....+.+.|+.++|..-+.+..
T Consensus 165 l~aR~laa~g~~a~Ae-safe~a~~---~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 165 LFARTLAAQGKYADAE-SAFEVAIS---YYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHhcCCchhHH-HHHHHHHH---hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 5566777777777766 66777666 23444333334445667776666655444443
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.93 E-value=0.035 Score=49.91 Aligned_cols=101 Identities=15% Similarity=0.158 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCH----HhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC-HHHH
Q 010215 380 TFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNV----QTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD-ITTY 454 (515)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~-~~~~ 454 (515)
.|...+..+.+.|++++|+..|+.+.+.. |+. ..+..+..++...|++++|+ ..|+.+.+.++-.|. ...+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~-~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAA-YYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCCCCcchhHHH
Confidence 44444444455678888888888887743 442 45666777788888888888 778888765543332 3445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 010215 455 TLVIHGLCRANKCEWAYLLFKEMIGHDITPRY 486 (515)
Q Consensus 455 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 486 (515)
-.+...+...|+.++|.+++++..+ ..|+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~--~yP~s 250 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIK--KYPGT 250 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--HCcCC
Confidence 5566677778888888888888775 34544
No 202
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.059 Score=48.07 Aligned_cols=104 Identities=14% Similarity=0.123 Sum_probs=69.1
Q ss_pred CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCCHH
Q 010215 232 CIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQY---NFSKVYELLDEMQAQGCPPNVV 308 (515)
Q Consensus 232 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~~~~~ 308 (515)
..|.|...|-.|...|...|+.+.|..-|.+..+.. .++...+..+..++.... ...++.++|+++.... +-|..
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~ir 228 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIR 228 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHH
Confidence 356677777778888888888888887777776652 345555555555544332 2456777777777653 22555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010215 309 TYTTVMSYLAKSGDFEEAIRITEKMKIVG 337 (515)
Q Consensus 309 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 337 (515)
+...+...+...|++.+|...|+.|.+..
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 66666667777788888888887777764
No 203
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.84 E-value=0.0048 Score=42.63 Aligned_cols=61 Identities=11% Similarity=-0.048 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 010215 451 ITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITP-RYQTCRLILDEVKQKH-MYDAAEKIEAVMK 513 (515)
Q Consensus 451 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~ 513 (515)
...|..+...+...|++++|+..|++.++. .| +...|..+..++...| ++++|++.++...
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344555555555555555555555555542 23 2334444444455555 4555555555543
No 204
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.66 Score=46.73 Aligned_cols=138 Identities=14% Similarity=0.070 Sum_probs=74.9
Q ss_pred CCCCCCCHHHHHH-----HHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHhhCCC
Q 010215 127 CPGYEHSSEIYEM-----MVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQ--WEDAVRTFDELGTFGL 199 (515)
Q Consensus 127 ~~~~~~~~~~~~~-----li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~ 199 (515)
..|++.+..-|.. +|+-+...+.+..|+++-..+..+.......+......+.+..+ -+++++..++=.....
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 3566665555543 56667777888888888777654433333344444455555432 2233333333222211
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc-C--C--CCChhhHHHHHHHHHccCChhHHHHHHHHHHh
Q 010215 200 EKNTETMNLLLDTLCKEGKVELARSVFLELKS-C--I--PPNAHTFNIFIHGWCKINRVDEAQWTIQEMKG 265 (515)
Q Consensus 200 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~--~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 265 (515)
-....|..+.+-....|+.+.|..+.+.-.. + + -.+..-+...+.-+.+.|+.+-...++-.+..
T Consensus 505 -~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 505 -TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred -CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 2344566677777778888888877765211 1 1 12223344455555666676666666666554
No 205
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.74 E-value=0.45 Score=43.56 Aligned_cols=122 Identities=13% Similarity=0.077 Sum_probs=64.8
Q ss_pred HcCCChHHHHHHHHHHhcCC-CCCHHHH-------HHHHHHHHhcC-CHHHHHHHHHHHhhC--------CCCCCH----
Q 010215 145 GKVRQMDQMRALLEEMSKGH-IVTLNTI-------AKVMRRFSGAG-QWEDAVRTFDELGTF--------GLEKNT---- 203 (515)
Q Consensus 145 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~-------~~li~~~~~~g-~~~~A~~~~~~m~~~--------g~~~~~---- 203 (515)
.+.|+++.|..++.++.... ..++... ..+.......+ ++++|..++++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 45677778888777775533 2222222 22333444555 777777776655332 112222
Q ss_pred -HHHHHHHHHHHHcCCHH---HHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 010215 204 -ETMNLLLDTLCKEGKVE---LARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 204 -~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 266 (515)
.++..++.+|...+..+ +|..+.+.+....+....++-.-+..+.+.++.+++.+.+.+|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 23444555555555433 3444444454444444555555556666666666666666666654
No 206
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.73 E-value=0.32 Score=42.09 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC
Q 010215 170 TIAKVMRRFSGAGQWEDAVRTFDELGTFGL--EKNTETMNLLLDTLCKEGKVELARSVFLELKSCIP 234 (515)
Q Consensus 170 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 234 (515)
.+......+.+.|++++|.+.|+.+..... +--....-.++.++.+.|+++.|...+++.....|
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP 73 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP 73 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 333445667778888888888888876421 11234455667778888888888888888544433
No 207
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.51 Score=44.08 Aligned_cols=279 Identities=9% Similarity=0.012 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHH
Q 010215 134 SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEK-NTETMNLLLDT 212 (515)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ll~~ 212 (515)
........+.+-+..++..|+..+....+-.+.+...|..-+..+..-|++++|+--.+.-.+. +| .+......-++
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c 126 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQC 126 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhh
Confidence 4455566778888899999999999999888888777777778888889999988777665543 33 23345555566
Q ss_pred HHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCC-CccHhHHHHHH-HHHHhcCChhH
Q 010215 213 LCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGC-HPCVISYSTII-QSYCRQYNFSK 290 (515)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li-~~~~~~g~~~~ 290 (515)
+...++..+|.+.++.- ..+ ....++..++....... +|...+|..+- .++...|++++
T Consensus 127 ~~a~~~~i~A~~~~~~~--------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~ 187 (486)
T KOG0550|consen 127 HLALSDLIEAEEKLKSK--------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDE 187 (486)
T ss_pred hhhhHHHHHHHHHhhhh--------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchh
Confidence 66666666666665521 111 11112222222221111 12223333322 23334455555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-------------HHHHHHHHhc
Q 010215 291 VYELLDEMQAQGCPPNVVTYTTVMS--YLAKSGDFEEAIRITEKMKIVGSKPDSRFF-------------NCLIYTLGRA 355 (515)
Q Consensus 291 A~~~~~~m~~~g~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------------~~li~~~~~~ 355 (515)
|.+.--...+..-. + .+...++ ++.-.++.+.+...|++.++.+ |+-... ..=.....+.
T Consensus 188 a~~ea~~ilkld~~-n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~ 262 (486)
T KOG0550|consen 188 AQSEAIDILKLDAT-N--AEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKN 262 (486)
T ss_pred HHHHHHHHHhcccc-h--hHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhc
Confidence 55544444433110 1 1222222 2223445555555555554432 221111 1111223456
Q ss_pred CCHHHHHHHHHhhchh---CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC-HHhHHHHHHHHHhcCChH
Q 010215 356 SRVQEAVYVYQVEMPE---NGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPN-VQTFHPLLKSCFKTGKTD 431 (515)
Q Consensus 356 g~~~~A~~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~g~~~ 431 (515)
|++..|.+.|. +... .+.+|+...|.....+..+.|+.++|+.--++..+ +.|. ...|..-..++...++++
T Consensus 263 G~y~~A~E~Yt-eal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 263 GNYRKAYECYT-EALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLALEKWE 338 (486)
T ss_pred cchhHHHHHHH-HhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777766 3221 22334455565556666667777777766666654 2222 112222223344456666
Q ss_pred HHHHHHHHHHHH
Q 010215 432 ECLSQLLDDMVN 443 (515)
Q Consensus 432 ~A~~~~~~~~~~ 443 (515)
+|+ +-++...+
T Consensus 339 ~AV-~d~~~a~q 349 (486)
T KOG0550|consen 339 EAV-EDYEKAMQ 349 (486)
T ss_pred HHH-HHHHHHHh
Confidence 666 55555444
No 208
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.70 E-value=0.011 Score=41.25 Aligned_cols=56 Identities=13% Similarity=0.115 Sum_probs=40.5
Q ss_pred HHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010215 142 DILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTF 197 (515)
Q Consensus 142 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 197 (515)
.+|.+.++++.|.++++.+...+|.++..+......+.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45667777777777777777777767666666677777777777777777777664
No 209
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.66 E-value=0.033 Score=51.47 Aligned_cols=133 Identities=8% Similarity=0.043 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH----hCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHH---cCC-CCCCH
Q 010215 380 TFNTMITMFSHHGHHEKAFHVLEEMN----KLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVN---KHH-LSLDI 451 (515)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~-~~p~~ 451 (515)
.|..+...|.-.|+++.|+..-+.-. +-|........+..+..++.-.|+++.|+ +.++.... +.| -....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~-ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAI-EHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHH-HHHHHHHHHHHHhcchhHHH
Confidence 34444555555567777765543322 22211223345666667777777777776 55544322 011 11223
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh----C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010215 452 TTYTLVIHGLCRANKCEWAYLLFKEMIG----H-DITPRYQTCRLILDEVKQKHMYDAAEKIEAVMK 513 (515)
Q Consensus 452 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 513 (515)
.+.-+|.++|.-..++++|+.++.+-+. . +..-....+++|..++...|..++|..+.+.-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3444566777767777777766554331 1 223345567777777777777777777665543
No 210
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.64 E-value=0.02 Score=46.68 Aligned_cols=71 Identities=18% Similarity=0.286 Sum_probs=42.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-----hCCCCCCHHHH
Q 010215 136 IYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELG-----TFGLEKNTETM 206 (515)
Q Consensus 136 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~~~~~~~ 206 (515)
+...++..+...|++++|..+.+.+...+|.+...+..+|.+|...|+..+|++.|+.+. +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 444556666667777777777777777777777777777777777777777777776653 23666665543
No 211
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.63 E-value=0.82 Score=45.23 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010215 185 EDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLE 228 (515)
Q Consensus 185 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 228 (515)
-+.+--++++.+.|-.|+... +...++-.|.+.+|.++|.+
T Consensus 617 L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 617 LELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 344455667777776676554 34456667777777777765
No 212
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.62 E-value=0.43 Score=41.83 Aligned_cols=182 Identities=13% Similarity=0.140 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 010215 134 SEIYEMMVDILGKVRQMDQMRALLEEMSKGHI---VTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLL 210 (515)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 210 (515)
...|+.-+.- .+.|++++|.+.|+.+..+.+ -+..+...++.++-+.+++++|+..+++..+.-......-|...|
T Consensus 35 ~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 3445544444 467999999999999988766 356788888899999999999999999987753222333455555
Q ss_pred HHHHHc-------CCHHHHHHHHHH---hhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHH-HHHH
Q 010215 211 DTLCKE-------GKVELARSVFLE---LKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISY-STII 279 (515)
Q Consensus 211 ~~~~~~-------~~~~~a~~~~~~---~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li 279 (515)
.+++.. .|...+...+.. +...+|.+.. ...|......+... ..-+ -.+.
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y--------------a~dA~~~i~~~~d~-----LA~~Em~Ia 174 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRY--------------APDAKARIVKLNDA-----LAGHEMAIA 174 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcc--------------hhhHHHHHHHHHHH-----HHHHHHHHH
Confidence 555422 223333333333 2223332221 12222222222110 0001 2345
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010215 280 QSYCRQYNFSKVYELLDEMQAQGCPPN---VVTYTTVMSYLAKSGDFEEAIRITEKMKIV 336 (515)
Q Consensus 280 ~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 336 (515)
+.|.+.|.+..|..-+++|.+. .+-+ ...+-.+..+|.+.|-.++|.+.-+-+..+
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 6677888888888888888775 2222 344556667777888777777765555443
No 213
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.59 E-value=0.58 Score=43.99 Aligned_cols=71 Identities=15% Similarity=0.122 Sum_probs=30.8
Q ss_pred HHHcCCChHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010215 143 ILGKVRQMDQMRALLEEMSKGH----IVTLNTIAKVMRRFSG---AGQWEDAVRTFDELGTFGLEKNTETMNLLLDTL 213 (515)
Q Consensus 143 ~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 213 (515)
.|-...+++..+++.+.+.... ..+.+.-...+-++-+ .|+.++|++++..+....-.+++.+|..+.+.|
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 3445555555555555554421 1122222222333334 455555555555533333344555554444433
No 214
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.50 E-value=0.79 Score=43.43 Aligned_cols=137 Identities=9% Similarity=0.077 Sum_probs=71.4
Q ss_pred cCCCCHHHHHHHhhccccCCCCcCC-HHHHHHHHHHhh-hCHHHHHHHHHHhccCCCCCCCHHHHHHHHH--HHHcCCCh
Q 010215 75 HVGSSEDEVFQSLKQDHVCNAIQPS-HYLVNKLIHRFK-DDWKSALGIFRWAGSCPGYEHSSEIYEMMVD--ILGKVRQM 150 (515)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~g~~p~-~~~~~~ll~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~ 150 (515)
++-...+.+|.+..+.......... ...-+.+|+++- ++.+.-........+..|- + .|-.|.. ..-+.+.+
T Consensus 20 ~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~--s--~~l~LF~~L~~Y~~k~~ 95 (549)
T PF07079_consen 20 KKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGK--S--AYLPLFKALVAYKQKEY 95 (549)
T ss_pred hhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCC--c--hHHHHHHHHHHHHhhhH
Confidence 3334445566666553111111111 233345666653 3444444444444333332 2 2222322 23467888
Q ss_pred HHHHHHHHHHhcC--C-CCCH---HHH---------HHHHHHHHhcCCHHHHHHHHHHHhhCCCC----CCHHHHHHHHH
Q 010215 151 DQMRALLEEMSKG--H-IVTL---NTI---------AKVMRRFSGAGQWEDAVRTFDELGTFGLE----KNTETMNLLLD 211 (515)
Q Consensus 151 ~~A~~~~~~~~~~--~-~~~~---~~~---------~~li~~~~~~g~~~~A~~~~~~m~~~g~~----~~~~~~~~ll~ 211 (515)
..|.+.|.....+ + .+.| +.. ...+.++...|++.++..+++++...=++ -+..+|+.++-
T Consensus 96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vl 175 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVL 175 (549)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Confidence 8888888766543 1 1111 111 12456778899999999888888654333 57888887665
Q ss_pred HHHH
Q 010215 212 TLCK 215 (515)
Q Consensus 212 ~~~~ 215 (515)
.+.+
T Consensus 176 mlsr 179 (549)
T PF07079_consen 176 MLSR 179 (549)
T ss_pred HHhH
Confidence 5543
No 215
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.44 E-value=0.83 Score=43.01 Aligned_cols=76 Identities=8% Similarity=-0.018 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcC----CCCChhhHHHHHHHHHc---cCChhHHHHHHHHHHhCCCCccHhHHHHHH
Q 010215 207 NLLLDTLCKEGKVELARSVFLELKSC----IPPNAHTFNIFIHGWCK---INRVDEAQWTIQEMKGHGCHPCVISYSTII 279 (515)
Q Consensus 207 ~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 279 (515)
..++-+|....+++...++.+.+..- ......+-....-++-+ .|+.++|++++..+....-.++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34444566666666666666665442 22222223333344444 566666666666644333345555555555
Q ss_pred HHH
Q 010215 280 QSY 282 (515)
Q Consensus 280 ~~~ 282 (515)
+.|
T Consensus 225 RIy 227 (374)
T PF13281_consen 225 RIY 227 (374)
T ss_pred HHH
Confidence 444
No 216
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.42 E-value=0.055 Score=42.33 Aligned_cols=101 Identities=12% Similarity=0.218 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHH
Q 010215 306 NVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMI 385 (515)
Q Consensus 306 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 385 (515)
|..++.+++.++++.|+++....+++..= |+..+... ..+. + -......|+..+..+++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~-------~---~~~spl~Pt~~lL~AIv 59 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD-------Y---PPSSPLYPTSRLLIAIV 59 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc-------c---CCCCCCCCCHHHHHHHH
Confidence 34566777777777777777766665442 22211100 0000 1 13345667888888888
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhc
Q 010215 386 TMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKT 427 (515)
Q Consensus 386 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~ 427 (515)
.+|+..|++..|+++++...+.-+++.+..+|..|+.-+...
T Consensus 60 ~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 60 HSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 888888888888888887777655666777777777665443
No 217
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.39 E-value=0.11 Score=50.45 Aligned_cols=55 Identities=16% Similarity=0.236 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 010215 202 NTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMK 264 (515)
Q Consensus 202 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 264 (515)
+...|..|.+...+.|+++.|++.|.+.+. +..|+-.|.-.|+.+.-.++.+...
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 344444444444444444444444444332 3334444444444444444443333
No 218
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.39 E-value=0.17 Score=49.27 Aligned_cols=154 Identities=13% Similarity=0.165 Sum_probs=104.2
Q ss_pred CCChHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010215 147 VRQMDQMRALLEEMS-KGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSV 225 (515)
Q Consensus 147 ~g~~~~A~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~ 225 (515)
.|+++++.++.+.-. -.. .+.+-...++..+-+.|..+.|+++-. |+. .-.....+.|+++.|.++
T Consensus 274 ~~d~~~v~~~i~~~~ll~~-i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNLLPN-IPKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDIALEI 340 (443)
T ss_dssp TT-HHH-----HHHHTGGG---HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHH
T ss_pred cCChhhhhhhhhhhhhccc-CChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHHHHHH
Confidence 567777655554111 111 224445667888888999999998753 322 234567789999999887
Q ss_pred HHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 010215 226 FLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPP 305 (515)
Q Consensus 226 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 305 (515)
.+++ ++...|..|.+...+.|+++-|++.|++..+ |..|+-.|.-.|+.+.-.++.+.....|-
T Consensus 341 a~~~-----~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-- 404 (443)
T PF04053_consen 341 AKEL-----DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD-- 404 (443)
T ss_dssp CCCC-----STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---
T ss_pred HHhc-----CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC--
Confidence 6544 4778999999999999999999999998764 67788888889999888888888877762
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010215 306 NVVTYTTVMSYLAKSGDFEEAIRITEKM 333 (515)
Q Consensus 306 ~~~~~~~li~~~~~~g~~~~a~~~~~~~ 333 (515)
++....++...|+.++..+++.+.
T Consensus 405 ----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 405 ----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ----HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 455556667779999888887664
No 219
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.38 E-value=0.84 Score=42.37 Aligned_cols=305 Identities=16% Similarity=0.124 Sum_probs=189.4
Q ss_pred CHHHHHHHHHHhccCCCCCCCHHHHHHHHHHH--HcCCChHHHHHHHHHHhcCCCCCHHHHHHHHH--HHHhcCCHHHHH
Q 010215 113 DWKSALGIFRWAGSCPGYEHSSEIYEMMVDIL--GKVRQMDQMRALLEEMSKGHIVTLNTIAKVMR--RFSGAGQWEDAV 188 (515)
Q Consensus 113 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~ 188 (515)
.+..+...|..-+...| |.+|-..+ .-.|+-..|+++-.+....-..+...+..++. .-.-.|+++.|.
T Consensus 68 sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar 140 (531)
T COG3898 68 SPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDAR 140 (531)
T ss_pred CcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHH
Confidence 34445555555544333 34444444 34678888888877664322234444444443 344579999999
Q ss_pred HHHHHHhhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 010215 189 RTFDELGTFGLEKNTE--TMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 189 ~~~~~m~~~g~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 266 (515)
+-|+.|... |... -...|.-...+.|+.+.|.+.-+.....-+.-...+.+.+...|..|+++.|+++++.-+..
T Consensus 141 ~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 141 KKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred HHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 999999862 2221 12233333456788888888877766556666788999999999999999999999887654
Q ss_pred C-CCccHh--HHHHHHHHHH---hcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010215 267 G-CHPCVI--SYSTIIQSYC---RQYNFSKVYELLDEMQAQGCPPNVV-TYTTVMSYLAKSGDFEEAIRITEKMKIVGSK 339 (515)
Q Consensus 267 ~-~~~~~~--~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 339 (515)
. +.++.. .-..|+.+-. -.-+...|...-.+..+ +.||-. .-..-..++.+.|++.++-.+++.+-+....
T Consensus 218 ~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 218 KVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred HhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC
Confidence 2 233332 1222332221 12345555555544443 355532 2333457788999999999999999887444
Q ss_pred CCHHHHHHHHHHHHhcCCHHH-----HHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCH
Q 010215 340 PDSRFFNCLIYTLGRASRVQE-----AVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNV 414 (515)
Q Consensus 340 ~~~~~~~~li~~~~~~g~~~~-----A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 414 (515)
|+ ++. +..+.+.|+... +..+- .|+. .+..+...+..+-...|++..|..--+.... ..|..
T Consensus 296 P~--ia~--lY~~ar~gdta~dRlkRa~~L~--slk~----nnaes~~~va~aAlda~e~~~ARa~Aeaa~r---~~pre 362 (531)
T COG3898 296 PD--IAL--LYVRARSGDTALDRLKRAKKLE--SLKP----NNAESSLAVAEAALDAGEFSAARAKAEAAAR---EAPRE 362 (531)
T ss_pred hH--HHH--HHHHhcCCCcHHHHHHHHHHHH--hcCc----cchHHHHHHHHHHHhccchHHHHHHHHHHhh---hCchh
Confidence 44 332 233456665332 22222 2322 3456667778888889999988877777666 56888
Q ss_pred HhHHHHHHHHH-hcCChHHHHHHHHHHHHH
Q 010215 415 QTFHPLLKSCF-KTGKTDECLSQLLDDMVN 443 (515)
Q Consensus 415 ~~~~~ll~~~~-~~g~~~~A~~~~~~~~~~ 443 (515)
..|..+.+.-. ..|+-.++. ..+.+..+
T Consensus 363 s~~lLlAdIeeAetGDqg~vR-~wlAqav~ 391 (531)
T COG3898 363 SAYLLLADIEEAETGDQGKVR-QWLAQAVK 391 (531)
T ss_pred hHHHHHHHHHhhccCchHHHH-HHHHHHhc
Confidence 88887776654 448888865 66666655
No 220
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.31 E-value=0.13 Score=45.30 Aligned_cols=105 Identities=15% Similarity=0.145 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCC-CHHHHHHH
Q 010215 135 EIYEMMVDILGKVRQMDQMRALLEEMSKGHI---VTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFG-LEK-NTETMNLL 209 (515)
Q Consensus 135 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~-~~~~~~~l 209 (515)
..|+.-++.| +.|++..|...|....++.+ .+.+++..|...+...|++++|..+|..+.+.- -.| -+..+--|
T Consensus 143 ~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 3677777766 56779999999998887655 477888888999999999999999998887642 122 34677778
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcCCCCChhhH
Q 010215 210 LDTLCKEGKVELARSVFLELKSCIPPNAHTF 240 (515)
Q Consensus 210 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 240 (515)
.....+.|+.++|...|+++.+.+|.+..+-
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 8888888999999999988777666555443
No 221
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.27 E-value=0.022 Score=46.34 Aligned_cols=51 Identities=16% Similarity=0.212 Sum_probs=20.4
Q ss_pred HHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHH
Q 010215 212 TLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQE 262 (515)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 262 (515)
.+...|+++.|..+...+....|.+...|..+|.+|...|+..+|.++|++
T Consensus 71 ~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~ 121 (146)
T PF03704_consen 71 ALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYER 121 (146)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 333444444444444443333334444444444444444444444444443
No 222
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.25 E-value=1.1 Score=42.43 Aligned_cols=144 Identities=13% Similarity=0.209 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhchhCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhH-HHHH
Q 010215 344 FFNCLIYTLGRASRVQEAVYVYQVEMPENG-VAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTF-HPLL 421 (515)
Q Consensus 344 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~-~~ll 421 (515)
+|...+..-.+..-++.|..+|. ...+.+ +.+++..++++|..++ .|+..-|..+|+--... .||...| ...+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~-k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~kyl 473 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFI-KLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKYL 473 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH-HHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHHH
Confidence 45556666667777888888887 666666 5677778888887666 46777888888765552 3554443 3455
Q ss_pred HHHHhcCChHHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010215 422 KSCFKTGKTDECLSQLLDDMVNKHHLSLD--ITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVK 497 (515)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 497 (515)
.-+...++-+.|. .+|+..+.+ +..+ ...|..+|+--..-|+...+..+-++|.+ +.|...+...+.+-|.
T Consensus 474 ~fLi~inde~nar-aLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRINDEENAR-ALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhCcHHHHH-HHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 5566777777766 777755542 2223 46788888888888888888888777765 5566666666655553
No 223
>PRK15331 chaperone protein SicA; Provisional
Probab=96.24 E-value=0.19 Score=40.78 Aligned_cols=90 Identities=10% Similarity=0.031 Sum_probs=57.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChh
Q 010215 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVD 254 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 254 (515)
..-+.+.|++++|..+|.-+.-.+ .-|..-+..|..++-..+++++|...|...-.-.+.|+...-....+|...|+.+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 444556777777777777666543 2345555666666666777777777776632222344445555667777777777
Q ss_pred HHHHHHHHHHh
Q 010215 255 EAQWTIQEMKG 265 (515)
Q Consensus 255 ~A~~~~~~~~~ 265 (515)
.|...|+....
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 77777777665
No 224
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.22 E-value=0.15 Score=40.40 Aligned_cols=76 Identities=9% Similarity=0.090 Sum_probs=53.5
Q ss_pred HHHHHcCCChHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 010215 141 VDILGKVRQMDQMRALLEEMSKGHI---VTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKE 216 (515)
Q Consensus 141 i~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 216 (515)
..-..+.|++++|.+.|+.+..+.+ -...+-..++.+|.+.+++++|+..+++.++.....-..-|...+.+++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 3344567899999999999888665 366777788889999999999999999888764322223444455554433
No 225
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.22 E-value=1 Score=41.83 Aligned_cols=103 Identities=16% Similarity=0.227 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHH
Q 010215 310 YTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFS 389 (515)
Q Consensus 310 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 389 (515)
.+..|.-+...|+...|.++-++.. .||-.-|...+.+|+..++|++-..+.. . . .+++-|...+.+|.
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~-s-k-----KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAK-S-K-----KSPIGYEPFVEACL 248 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHh-C-C-----CCCCChHHHHHHHH
Confidence 3444455555566655555544442 4566666666666666666665555433 1 1 12355666666666
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHH
Q 010215 390 HHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECL 434 (515)
Q Consensus 390 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 434 (515)
+.|+..+|..+..++ + +..-+..|.+.|++.+|.
T Consensus 249 ~~~~~~eA~~yI~k~------~-----~~~rv~~y~~~~~~~~A~ 282 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI------P-----DEERVEMYLKCGDYKEAA 282 (319)
T ss_pred HCCCHHHHHHHHHhC------C-----hHHHHHHHHHCCCHHHHH
Confidence 666666666655542 1 122344555666666655
No 226
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.22 E-value=0.4 Score=38.60 Aligned_cols=12 Identities=0% Similarity=0.332 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 010215 134 SEIYEMMVDILG 145 (515)
Q Consensus 134 ~~~~~~li~~~~ 145 (515)
+..++.++..|+
T Consensus 41 ~~~~~~li~ly~ 52 (140)
T smart00299 41 PALQTKLIELYA 52 (140)
T ss_pred hhHHHHHHHHHH
Confidence 333444444443
No 227
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.21 E-value=0.8 Score=45.30 Aligned_cols=22 Identities=9% Similarity=0.125 Sum_probs=11.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 010215 457 VIHGLCRANKCEWAYLLFKEMI 478 (515)
Q Consensus 457 li~~~~~~g~~~~A~~~~~~m~ 478 (515)
+++.....|++++|..+.++..
T Consensus 779 iVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 779 LVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred HhhheeecccchHhHhhhhhCc
Confidence 4444555555555555555543
No 228
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.17 E-value=0.027 Score=39.28 Aligned_cols=20 Identities=15% Similarity=0.091 Sum_probs=7.5
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 010215 459 HGLCRANKCEWAYLLFKEMI 478 (515)
Q Consensus 459 ~~~~~~g~~~~A~~~~~~m~ 478 (515)
.++.+.|++++|.+.+++..
T Consensus 37 ~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 37 RCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHHHhccHHHHHHHHHHHH
Confidence 33333333333333333333
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.11 E-value=0.15 Score=48.56 Aligned_cols=67 Identities=7% Similarity=-0.197 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010215 131 EHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLN---TIAKVMRRFSGAGQWEDAVRTFDELGTF 197 (515)
Q Consensus 131 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~ 197 (515)
+.+...++.+..+|.+.|++++|...|++..+.++.+.. ++..+..+|...|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 457889999999999999999999999999888887664 4888899999999999999999999874
No 230
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.42 Score=42.66 Aligned_cols=121 Identities=12% Similarity=0.081 Sum_probs=60.4
Q ss_pred HHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 010215 144 LGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELAR 223 (515)
Q Consensus 144 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~ 223 (515)
....|++.+|..+|+......+.+..+...++.+|...|+.+.|..++..+...--.........-+..+.+.....+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 34556666666666666665555555555566666666666666666666543211111111122233333333333333
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHh
Q 010215 224 SVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKG 265 (515)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 265 (515)
.+-.++.. .|.|...-..+...+...|+.++|.+.+-.+.+
T Consensus 224 ~l~~~~aa-dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 224 DLQRRLAA-DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33222221 233555555555666666666666555544443
No 231
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.099 Score=48.58 Aligned_cols=109 Identities=15% Similarity=0.124 Sum_probs=54.7
Q ss_pred HHHHHHcCCChHHHHHHHHHHhc----CCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 010215 140 MVDILGKVRQMDQMRALLEEMSK----GHIVT-----------LNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTE 204 (515)
Q Consensus 140 li~~~~~~g~~~~A~~~~~~~~~----~~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 204 (515)
-.+.|.+.|++..|...|+.+.. ....+ ..++.++..+|.+.+++.+|++.-+..+..+ ++|+.
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~K 292 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVK 292 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchh
Confidence 34678899999999999887643 11111 1123334444445555555555444444433 33444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc
Q 010215 205 TMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCK 249 (515)
Q Consensus 205 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 249 (515)
..-.-..+|...|+++.|+..|..+..-.|.|..+-+.|+.+-.+
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 444444444445555555555544444334444444444444333
No 232
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.02 E-value=0.9 Score=39.35 Aligned_cols=208 Identities=13% Similarity=0.119 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010215 134 SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTL 213 (515)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 213 (515)
...|.--..+|-...++++|...+.+..+....+.+.+. ..+.++.|.-+.+++.+. ..-+..|+.-...|
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 344555556777778888888877776532221111111 012234444444444432 12233455556677
Q ss_pred HHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC---C--CCccHhHHHHHHHHHHhcCCh
Q 010215 214 CKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH---G--CHPCVISYSTIIQSYCRQYNF 288 (515)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~~~~li~~~~~~g~~ 288 (515)
..+|..+.|-..+++.-+ ..+.-++++|+.+|++.... + .+.-...+..+-+.+.+...+
T Consensus 102 ~E~GspdtAAmaleKAak---------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAK---------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HHhCCcchHHHHHHHHHH---------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 777777777666665221 11223344444444443211 0 000112233344455666666
Q ss_pred hHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCCHHH
Q 010215 289 SKVYELLDEMQAQ----GCPPN-VVTYTTVMSYLAKSGDFEEAIRITEKMKIVG---SKPDSRFFNCLIYTLGRASRVQE 360 (515)
Q Consensus 289 ~~A~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~ 360 (515)
++|-..+.+-... .--++ -..|...|-.+....|+..|...++.--+.+ -+.+..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 6655544332211 00111 1234444555555667777777777644321 133455666666665 3566666
Q ss_pred HHHHHH
Q 010215 361 AVYVYQ 366 (515)
Q Consensus 361 A~~~~~ 366 (515)
+..++.
T Consensus 246 ~~kvl~ 251 (308)
T KOG1585|consen 246 IKKVLS 251 (308)
T ss_pred HHHHHc
Confidence 666654
No 233
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.01 E-value=0.028 Score=39.90 Aligned_cols=61 Identities=18% Similarity=0.335 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010215 274 SYSTIIQSYCRQYNFSKVYELLDEMQAQ----GC-PPN-VVTYTTVMSYLAKSGDFEEAIRITEKMK 334 (515)
Q Consensus 274 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 334 (515)
+|+.+...|...|++++|++.|++..+. |- .|+ ..++..+...+...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555554421 10 011 2344445555555555555555555443
No 234
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.99 E-value=0.015 Score=41.30 Aligned_cols=60 Identities=15% Similarity=0.239 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcC----CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010215 135 EIYEMMVDILGKVRQMDQMRALLEEMSKG----HI---VTLNTIAKVMRRFSGAGQWEDAVRTFDEL 194 (515)
Q Consensus 135 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 194 (515)
.+++.+...|.+.|++++|++.|++..+. +. ....++..+..+|...|++++|++.+++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45677777777777777777777765431 11 12334445555555666666666655554
No 235
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.99 E-value=2.1 Score=43.33 Aligned_cols=342 Identities=16% Similarity=0.151 Sum_probs=187.1
Q ss_pred cCCCCcCCHHHHHHHH-----HHhh--hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCCh---HHHHHHHHHHh
Q 010215 92 VCNAIQPSHYLVNKLI-----HRFK--DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQM---DQMRALLEEMS 161 (515)
Q Consensus 92 ~~~g~~p~~~~~~~ll-----~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~ 161 (515)
.+-|+..+..-|.++= ..+. +....|.++..|+....+ . ...+|.....-+.+..+. +-+..+=+++.
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~-~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls 501 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPES-Q-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLS 501 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccc-c-ccHHHHHHHHHHHhccCccchHHHHHHHHHhc
Confidence 4567777777776543 3322 467788899888852221 1 256777888877776432 22333333333
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCh
Q 010215 162 KGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLE----KNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNA 237 (515)
Q Consensus 162 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 237 (515)
.. ....-+|..+.+...+.|+++-|..+++.=.+.+.. .+..-+...+.-+.+.|+.+....++-.++.. .+.
T Consensus 502 ~~-~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~--~~~ 578 (829)
T KOG2280|consen 502 AK-LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK--LNR 578 (829)
T ss_pred cc-CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH--HHH
Confidence 32 122334445567777899999999887643222210 01122334444555666666666665554321 111
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHH--HHH----HCCCCCCHHHHH
Q 010215 238 HTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLD--EMQ----AQGCPPNVVTYT 311 (515)
Q Consensus 238 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--~m~----~~g~~~~~~~~~ 311 (515)
..+. .-..+...|..+|.+..+.. |.. .+-+.|-+ ++-.+++.-|. ... ..|..|+. .
T Consensus 579 s~l~------~~l~~~p~a~~lY~~~~r~~---~~~---~l~d~y~q-~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k 642 (829)
T KOG2280|consen 579 SSLF------MTLRNQPLALSLYRQFMRHQ---DRA---TLYDFYNQ-DDNHQALASFHLQASYAAETIEGRIPAL---K 642 (829)
T ss_pred HHHH------HHHHhchhhhHHHHHHHHhh---chh---hhhhhhhc-ccchhhhhhhhhhhhhhhhhhcccchhH---H
Confidence 1111 11234455666666655431 211 12222222 23222222221 111 12333333 3
Q ss_pred HHHHHHHhcCCHH---H-------HHHHHHHHHh-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHH
Q 010215 312 TVMSYLAKSGDFE---E-------AIRITEKMKI-VGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTST 380 (515)
Q Consensus 312 ~li~~~~~~g~~~---~-------a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 380 (515)
...+++++..... + -.++.+.+.. .|..-..-+.+--+.-+...|+..+|.++-. +.+ -||...
T Consensus 643 ~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~-~Fk----ipdKr~ 717 (829)
T KOG2280|consen 643 TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKS-DFK----IPDKRL 717 (829)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHH-hcC----Ccchhh
Confidence 3344444433311 1 1122222221 2222333344445566677899999988887 554 389999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 010215 381 FNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHG 460 (515)
Q Consensus 381 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~ 460 (515)
|-.-+.+++..+++++-+++-+.. ++ +.-|.....+|.+.|+.++|. +++.+... +.-.+.+
T Consensus 718 ~wLk~~aLa~~~kweeLekfAksk------ks-PIGy~PFVe~c~~~~n~~EA~-KYiprv~~----------l~ekv~a 779 (829)
T KOG2280|consen 718 WWLKLTALADIKKWEELEKFAKSK------KS-PIGYLPFVEACLKQGNKDEAK-KYIPRVGG----------LQEKVKA 779 (829)
T ss_pred HHHHHHHHHhhhhHHHHHHHHhcc------CC-CCCchhHHHHHHhcccHHHHh-hhhhccCC----------hHHHHHH
Confidence 999999999999998876665543 22 567888999999999999998 77644311 1156788
Q ss_pred HHhcCCHHHHHHHHHHH
Q 010215 461 LCRANKCEWAYLLFKEM 477 (515)
Q Consensus 461 ~~~~g~~~~A~~~~~~m 477 (515)
|.+.|++.+|.+..-+-
T Consensus 780 y~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 780 YLRVGDVKEAADLAAEH 796 (829)
T ss_pred HHHhccHHHHHHHHHHh
Confidence 99999999988765443
No 236
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=1.1 Score=40.08 Aligned_cols=148 Identities=14% Similarity=0.147 Sum_probs=83.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHH
Q 010215 316 YLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHE 395 (515)
Q Consensus 316 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 395 (515)
.....|++.+|...|+...... +-+...--.+..+|...|+.+.|..++. .+...--.........-|..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~-~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILA-ALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHH-hCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3456677777777777777653 2334455567777788888888888887 5543221111122122233333333333
Q ss_pred HHHHHHHHHHhCCCCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010215 396 KAFHVLEEMNKLEHCKP-NVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWA 470 (515)
Q Consensus 396 ~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 470 (515)
+...+-.+.-. .| |...-..+...+...|+.++|++.++.-+.+..+.. |...-..++..+.-.|..+.+
T Consensus 221 ~~~~l~~~~aa----dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 221 EIQDLQRRLAA----DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred CHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCHH
Confidence 33333333322 24 555566666777788888888866666666655544 444555666666555544433
No 237
>PRK11906 transcriptional regulator; Provisional
Probab=95.81 E-value=0.76 Score=44.06 Aligned_cols=147 Identities=7% Similarity=0.057 Sum_probs=86.1
Q ss_pred ChHHHHHHHHHHh---cCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 010215 149 QMDQMRALLEEMS---KGHIVTLNTIAKVMRRFSG---------AGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKE 216 (515)
Q Consensus 149 ~~~~A~~~~~~~~---~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 216 (515)
..+.|..+|++.. ..++....++..+..++.. .....+|.+.-++..+.+ +-|......+..+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 3567888898888 5666555555544433322 223445666666666654 44666666666666666
Q ss_pred CCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCC-CCccHhHHHHHHHHHHhcCChhHHHHHH
Q 010215 217 GKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHG-CHPCVISYSTIIQSYCRQYNFSKVYELL 295 (515)
Q Consensus 217 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~ 295 (515)
++++.|..+|++...-.|....+|....-...-+|+.++|.+.+++..+.. .+.-.......++.|+.++ .++|+++|
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 777777777777555445555666666666666777777777777755442 1111223333344555443 56666665
Q ss_pred HH
Q 010215 296 DE 297 (515)
Q Consensus 296 ~~ 297 (515)
-+
T Consensus 431 ~~ 432 (458)
T PRK11906 431 YK 432 (458)
T ss_pred hh
Confidence 43
No 238
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.80 E-value=0.6 Score=46.22 Aligned_cols=163 Identities=13% Similarity=0.051 Sum_probs=95.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhchhCCCCCCH-----HHHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCCCHHhH
Q 010215 347 CLIYTLGRASRVQEAVYVYQVEMPENGVAPDT-----STFNTMITMFSH----HGHHEKAFHVLEEMNKLEHCKPNVQTF 417 (515)
Q Consensus 347 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~ 417 (515)
.++...+=.|+-+.+.+.+.......++.-.. ..|+.++..++. ....+.|.+++..+.+. -|+...|
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lf 269 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALF 269 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHH
Confidence 34444444566666666555222222221111 123333333332 45677888899888884 4776665
Q ss_pred HHHH-HHHHhcCChHHHHHHHHHHHHHcCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010215 418 HPLL-KSCFKTGKTDECLSQLLDDMVNKHHLSL--DITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILD 494 (515)
Q Consensus 418 ~~ll-~~~~~~g~~~~A~~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 494 (515)
...- +.+...|++++|+ +.+++.......-+ ....+--+...+.-.+++++|.+.|.++.+.. .-+..+|.-+..
T Consensus 270 l~~~gR~~~~~g~~~~Ai-~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAI-ESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHhcCHHHHH-HHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 4433 4566788999998 88886553111111 22334456677788899999999999998643 334455555555
Q ss_pred HH-HhcCCH-------HHHHHHHHHHHh
Q 010215 495 EV-KQKHMY-------DAAEKIEAVMKK 514 (515)
Q Consensus 495 ~~-~~~g~~-------~~a~~~~~~m~~ 514 (515)
+| ...|+. ++|.+++.++.+
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 55 567877 777777776643
No 239
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.79 E-value=1.8 Score=41.05 Aligned_cols=146 Identities=16% Similarity=0.257 Sum_probs=100.3
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHH
Q 010215 272 VISYSTIIQSYCRQYNFSKVYELLDEMQAQG-CPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFF-NCLI 349 (515)
Q Consensus 272 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~li 349 (515)
...|...++...+..-.+.|..+|-+..+.| +.+++..+++++..++. |+...|..+|+.-... -||...| .-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4567777777777777888888888888887 56777888888877654 6777888888765543 2343333 4455
Q ss_pred HHHHhcCCHHHHHHHHHhhchhCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHH
Q 010215 350 YTLGRASRVQEAVYVYQVEMPENGVAPD--TSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCF 425 (515)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~ 425 (515)
..+...++-+.|..+|+..+.. +..+ ...|..+|..-.+-|+...+..+=++|.+ +.|...+......-|.
T Consensus 474 ~fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e---~~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE---LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH---HcCcHhHHHHHHHHHh
Confidence 6667788888888888733332 1222 45788888888888888888888888777 4566555555554443
No 240
>PRK15331 chaperone protein SicA; Provisional
Probab=95.70 E-value=0.094 Score=42.55 Aligned_cols=87 Identities=9% Similarity=0.008 Sum_probs=68.8
Q ss_pred HHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 010215 144 LGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELAR 223 (515)
Q Consensus 144 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~ 223 (515)
+-..|++++|..+|.-+..-++-+.+-+..|..++-..+++++|+..|......+ .-|+..+-....++...|+.+.|+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 3467999999999999888888888888888888888999999999998775543 234444555777888899999999
Q ss_pred HHHHHhhc
Q 010215 224 SVFLELKS 231 (515)
Q Consensus 224 ~~~~~~~~ 231 (515)
..|.....
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 99888544
No 241
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.59 E-value=0.84 Score=45.18 Aligned_cols=113 Identities=17% Similarity=0.101 Sum_probs=57.6
Q ss_pred CChhHHHHHHHHHHhCCCCccHhHHHHH-HHHHHhcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHH
Q 010215 251 NRVDEAQWTIQEMKGHGCHPCVISYSTI-IQSYCRQYNFSKVYELLDEMQAQG---CPPNVVTYTTVMSYLAKSGDFEEA 326 (515)
Q Consensus 251 g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~~g~~~~a 326 (515)
.+.+.|.++++.+..+ -|+...|... .+.+...|+.++|++.|+...... .+.....+--+.-.+.-.+++++|
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 4556666666666654 3555444333 234445666666666666543211 111233344444555666667777
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHH-HHHHhcCCH-------HHHHHHHH
Q 010215 327 IRITEKMKIVGSKPDSRFFNCLI-YTLGRASRV-------QEAVYVYQ 366 (515)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~-------~~A~~~~~ 366 (515)
.+.|..+.+.. .-+..+|.-+. .++...|+. ++|..+|.
T Consensus 325 ~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~ 371 (468)
T PF10300_consen 325 AEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFR 371 (468)
T ss_pred HHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHH
Confidence 76666666543 22333333322 233345555 66666665
No 242
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.54 E-value=0.29 Score=46.73 Aligned_cols=66 Identities=15% Similarity=0.008 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCh---hhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 010215 201 KNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNA---HTFNIFIHGWCKINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 201 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 266 (515)
.+...++.+..+|...|++++|...|++.....|.+. .+|..+..+|.+.|+.++|...+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566677777777777777777777777433333333 34677777777777777777777777664
No 243
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.48 E-value=0.28 Score=43.27 Aligned_cols=95 Identities=16% Similarity=0.181 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC----HHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC-HHHH
Q 010215 380 TFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPN----VQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD-ITTY 454 (515)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~-~~~~ 454 (515)
.|+.-+.. .+.|++..|...|...++.. |+ ...+-.|..++...|++++|. .+|..+.+.++-.|. +..+
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y---P~s~~~~nA~yWLGe~~y~qg~y~~Aa-~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKY---PNSTYTPNAYYWLGESLYAQGDYEDAA-YIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcC---CCCcccchhHHHHHHHHHhcccchHHH-HHHHHHHHhCCCCCCChHHH
Confidence 56665554 45677999999998888854 32 234666888888999999988 888888887776665 4677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 455 TLVIHGLCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 455 ~~li~~~~~~g~~~~A~~~~~~m~~ 479 (515)
--|.....+.|+.++|..+|++..+
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 7888888899999999999998876
No 244
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.46 E-value=1.1 Score=36.08 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=17.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 010215 313 VMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGR 354 (515)
Q Consensus 313 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 354 (515)
++..+...+.......+++.+.+.+ ..+....+.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 3444444444444444444444433 2333444444444443
No 245
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.42 E-value=0.14 Score=45.03 Aligned_cols=84 Identities=13% Similarity=0.141 Sum_probs=55.5
Q ss_pred CChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhc----------------CChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010215 251 NRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQ----------------YNFSKVYELLDEMQAQGCPPNVVTYTTVM 314 (515)
Q Consensus 251 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------g~~~~A~~~~~~m~~~g~~~~~~~~~~li 314 (515)
+.++-....++.|.+-|+..|..+|+.|++.+=+. .+-+-+++++++|...|+.||..+-..++
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv 165 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV 165 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 34444445555666666666666666666554321 12356889999999999999999999999
Q ss_pred HHHHhcCCH-HHHHHHHHHHH
Q 010215 315 SYLAKSGDF-EEAIRITEKMK 334 (515)
Q Consensus 315 ~~~~~~g~~-~~a~~~~~~~~ 334 (515)
+++.+.+-. .+..++.-.|-
T Consensus 166 n~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 166 NAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHhccccccHHHHHHHHHhhh
Confidence 999887753 33444444443
No 246
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.17 E-value=1.1 Score=34.71 Aligned_cols=140 Identities=9% Similarity=0.045 Sum_probs=74.7
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHH
Q 010215 178 FSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQ 257 (515)
Q Consensus 178 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 257 (515)
..-.|..++..++..+.... .+..-+|.++.-....-+-+-..+.++.+-+-+.- ..+|++....
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi------------s~C~NlKrVi 76 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI------------SKCGNLKRVI 76 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G------------GG-S-THHHH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc------------hhhcchHHHH
Confidence 34456777777777776652 34555555555555555555555666555443221 2234444333
Q ss_pred HHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010215 258 WTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVG 337 (515)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 337 (515)
..+-.+- .+.......++.....|+-|.-.+++.++.+. -.+++.....+..+|.+.|+..++.+++.+.-+.|
T Consensus 77 ~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 77 ECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3333221 13344556666777777777777777777653 35677777777788888888888888887777766
Q ss_pred C
Q 010215 338 S 338 (515)
Q Consensus 338 ~ 338 (515)
+
T Consensus 151 ~ 151 (161)
T PF09205_consen 151 L 151 (161)
T ss_dssp -
T ss_pred h
Confidence 4
No 247
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.06 E-value=2.1 Score=38.97 Aligned_cols=154 Identities=10% Similarity=0.069 Sum_probs=100.7
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC----hhhHHHHHHHHHccCCh
Q 010215 178 FSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPN----AHTFNIFIHGWCKINRV 253 (515)
Q Consensus 178 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~ 253 (515)
.--+|+..+|-..++++.+. .+.|...++..=++|.-.|+.+.-...++++...-.++ ..+-..+.-++..+|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 34467778887788888765 46677888888888888888888888887754433333 33444455566678889
Q ss_pred hHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHH
Q 010215 254 DEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPN---VVTYTTVMSYLAKSGDFEEAIRIT 330 (515)
Q Consensus 254 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~ 330 (515)
++|++.-++..+.+ +.|.-+-.++...+-.+|++.++.++..+-...=-..+ ..-|--..-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99988888887765 44666666777777788888888887765443200000 111212222344557888888888
Q ss_pred HHH
Q 010215 331 EKM 333 (515)
Q Consensus 331 ~~~ 333 (515)
+.=
T Consensus 271 D~e 273 (491)
T KOG2610|consen 271 DRE 273 (491)
T ss_pred HHH
Confidence 753
No 248
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.00 E-value=0.075 Score=32.65 Aligned_cols=37 Identities=11% Similarity=0.028 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHH
Q 010215 136 IYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIA 172 (515)
Q Consensus 136 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 172 (515)
++..+...|.+.|++++|+++|+++.+.++.+..+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~ 39 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWR 39 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 4556666677777777777777777666666655554
No 249
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=1.5 Score=41.17 Aligned_cols=61 Identities=10% Similarity=0.109 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010215 380 TFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVN 443 (515)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 443 (515)
+++.+..+|.+.+++.+|++.-.+....+ ++|....--=..+|...|+++.|. ..|+++.+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~--~~N~KALyRrG~A~l~~~e~~~A~-~df~ka~k 319 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD--PNNVKALYRRGQALLALGEYDLAR-DDFQKALK 319 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHhhccHHHHH-HHHHHHHH
Confidence 34444455555555555555555555543 444444444455555555555555 55555544
No 250
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=94.88 E-value=5.5 Score=41.10 Aligned_cols=62 Identities=3% Similarity=0.013 Sum_probs=36.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHhhCC
Q 010215 137 YEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQ-------WEDAVRTFDELGTFG 198 (515)
Q Consensus 137 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g 198 (515)
.=++|-.+.++|.+++|.++..+...........+...+..|....+ -++...-|+...+..
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~ 182 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS 182 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 34677788899999999999966655444333444444677766422 235555566655543
No 251
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.87 E-value=1.8 Score=35.46 Aligned_cols=132 Identities=14% Similarity=0.107 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH-HHHH--
Q 010215 134 SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIA--KVMRRFSGAGQWEDAVRTFDELGTFGLEKNTE-TMNL-- 208 (515)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~-- 208 (515)
...|..-++ ++..+..++|..-|..+...+.-+...+. .......+.|+...|+..|+++-.....|-.. -...
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 344444444 34566777888888887776655444432 23455667778888888888776653333222 1111
Q ss_pred HHHHHHHcCCHHHHHHHHHHhh-cCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 010215 209 LLDTLCKEGKVELARSVFLELK-SCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 209 ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 266 (515)
-.-.+...|.++....-.+.+. .+.+-....-.+|.-+-.+.|++..|.++|..+...
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 1123455677777666666543 334444555566666677777777777777776653
No 252
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.84 E-value=1.3 Score=45.41 Aligned_cols=171 Identities=15% Similarity=0.204 Sum_probs=82.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH----HHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc
Q 010215 174 VMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLD----TLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCK 249 (515)
Q Consensus 174 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 249 (515)
-+..+.+...++-|+.+-+.- ..+..+...+.. -+.+.|++++|...|-+-..-.+|. .+|.-|..
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~-----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s-----~Vi~kfLd 409 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQ-----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS-----EVIKKFLD 409 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH-----HHHHHhcC
Confidence 355666666666666554332 123333333332 3335566666666665522222222 23444555
Q ss_pred cCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010215 250 INRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRI 329 (515)
Q Consensus 250 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 329 (515)
..++.+-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+... .|... .-....+..|.+.+-.++|..+
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~--fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWF--FDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Cccee--eeHHHHHHHHHHhChHHHHHHH
Confidence 55566666666666666643 34444556666666666665555544333 22110 0123344445555555555444
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010215 330 TEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQ 366 (515)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 366 (515)
-..... .......++ -..|++++|.+.+.
T Consensus 486 A~k~~~-----he~vl~ill---e~~~ny~eAl~yi~ 514 (933)
T KOG2114|consen 486 ATKFKK-----HEWVLDILL---EDLHNYEEALRYIS 514 (933)
T ss_pred HHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHh
Confidence 333221 222333332 33456666666665
No 253
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.82 E-value=4.2 Score=39.45 Aligned_cols=55 Identities=7% Similarity=-0.093 Sum_probs=29.0
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010215 140 MVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGT 196 (515)
Q Consensus 140 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 196 (515)
++.---+..+.+.-.++-.+..+.++....+|..|. --......+|+++|++..+
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLA--EEeA~Ti~Eae~l~rqAvk 228 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEINPDCADAYILLA--EEEASTIVEAEELLRQAVK 228 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcc--cccccCHHHHHHHHHHHHH
Confidence 344444555555555555566555655556654221 1223445666666666554
No 254
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.60 E-value=1.7 Score=33.84 Aligned_cols=65 Identities=15% Similarity=0.213 Sum_probs=37.9
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010215 415 QTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDI 482 (515)
Q Consensus 415 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 482 (515)
..+...+......|+-+. ++++..++.+ .-++++...-.+..+|.+.|+..++.+++++..+.|+
T Consensus 87 e~vD~ALd~lv~~~kkDq-Ldki~~~l~k--n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQ-LDKIYNELKK--NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHH-HHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHH-HHHHHHHHhh--ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344445566666666666 4466666654 2345666677777777777777777777777777664
No 255
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.49 E-value=0.5 Score=42.45 Aligned_cols=78 Identities=15% Similarity=0.226 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCCCCHHHHHHH
Q 010215 135 EIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGT-----FGLEKNTETMNLL 209 (515)
Q Consensus 135 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~~~l 209 (515)
.++..++..+..+|+++.+.+.++++...++-+...+..++.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 35566777777777777777777777777777777777777777777777777777776644 4666666655544
Q ss_pred HHH
Q 010215 210 LDT 212 (515)
Q Consensus 210 l~~ 212 (515)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 443
No 256
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=94.47 E-value=1.9 Score=38.73 Aligned_cols=116 Identities=14% Similarity=0.108 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHh-cCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010215 394 HEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFK-TGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYL 472 (515)
Q Consensus 394 ~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 472 (515)
..+|+.+|+.....+.+--|..+...+++.... .+..-.|.-++.+-+...++-.++..+...++..+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 344555555221111133445555555555444 2222233334455555555555666666666666666666666666
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010215 473 LFKEMIGH-DITPRYQTCRLILDEVKQKHMYDAAEKIE 509 (515)
Q Consensus 473 ~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 509 (515)
+++..... +..-|...|..++......|+..-..++.
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 66665543 33445566666666666666666555554
No 257
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.38 E-value=3.2 Score=36.17 Aligned_cols=203 Identities=15% Similarity=0.148 Sum_probs=88.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcc
Q 010215 171 IAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKI 250 (515)
Q Consensus 171 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 250 (515)
|.....+|....++++|...+.+..+. .+.|...|. ....++.|.-+.+++.. ++.-+..|+--..+|..+
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~k-lsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSK-LSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHh
Confidence 444455666666677666665554431 111111111 11122333333333321 222334455566666666
Q ss_pred CChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCC---HHHHHHHHHHHHhcCCHHH
Q 010215 251 NRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGC--PPN---VVTYTTVMSYLAKSGDFEE 325 (515)
Q Consensus 251 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~---~~~~~~li~~~~~~g~~~~ 325 (515)
|.++.|-..+++.-+. ..+-++++|+++|++...--. ..+ ...+...-..+.+...+++
T Consensus 105 GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred CCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence 6666666555554321 123445555555555432100 001 1122333344445555555
Q ss_pred HHHHHHHHHh----cCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh---chhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 010215 326 AIRITEKMKI----VGSKPDS-RFFNCLIYTLGRASRVQEAVYVYQVE---MPENGVAPDTSTFNTMITMFSHHGHHEKA 397 (515)
Q Consensus 326 a~~~~~~~~~----~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A 397 (515)
|-..+.+-.. ..--++. ..|-+.|-.|.-..++..|...++ . +....-.-+..+...|+.+|- .|+.+++
T Consensus 169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r-~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~ 246 (308)
T KOG1585|consen 169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYR-DCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEI 246 (308)
T ss_pred HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhc-chhcCccccChHHHHHHHHHHHHhc-cCCHHHH
Confidence 4433332211 0001111 234444445555567777777776 3 221112224455666666553 3555554
Q ss_pred HHH
Q 010215 398 FHV 400 (515)
Q Consensus 398 ~~~ 400 (515)
-++
T Consensus 247 ~kv 249 (308)
T KOG1585|consen 247 KKV 249 (308)
T ss_pred HHH
Confidence 433
No 258
>PRK11906 transcriptional regulator; Provisional
Probab=94.17 E-value=3.8 Score=39.52 Aligned_cols=95 Identities=9% Similarity=0.050 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHH
Q 010215 377 DTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPN-VQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYT 455 (515)
Q Consensus 377 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~ 455 (515)
|......+..+....++++.|..+|++....+ || ..+|......+...|+.++|. +.+++..+..+...-.....
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~---Pn~A~~~~~~~~~~~~~G~~~~a~-~~i~~alrLsP~~~~~~~~~ 412 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHS---TDIASLYYYRALVHFHNEKIEEAR-ICIDKSLQLEPRRRKAVVIK 412 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC---CccHHHHHHHHHHHHHcCCHHHHH-HHHHHHhccCchhhHHHHHH
Confidence 45555555555555666777777777766633 44 334444445556667777766 66666544222222233333
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 010215 456 LVIHGLCRANKCEWAYLLFKE 476 (515)
Q Consensus 456 ~li~~~~~~g~~~~A~~~~~~ 476 (515)
..++.|+..+ .++|++++-+
T Consensus 413 ~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 413 ECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHHHcCCc-hhhhHHHHhh
Confidence 3444555443 5556655543
No 259
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.03 E-value=2.8 Score=38.51 Aligned_cols=129 Identities=16% Similarity=0.243 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH--cC----CHHHHHHHHHHhhcC----CCCChhhHHHHHHHHHccCCh
Q 010215 184 WEDAVRTFDELGTFGLEKNTETMNLLLDTLCK--EG----KVELARSVFLELKSC----IPPNAHTFNIFIHGWCKINRV 253 (515)
Q Consensus 184 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~ 253 (515)
+++.+.+++.|.+.|+.-+..+|-+..-.... .. ....+..+|+.|++. ..++..++..++.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34566788888998888888777654433333 22 255678888888764 23445555555444 33332
Q ss_pred ----hHHHHHHHHHHhCCCCccH--hHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010215 254 ----DEAQWTIQEMKGHGCHPCV--ISYSTIIQSYCRQYN--FSKVYELLDEMQAQGCPPNVVTYTTVM 314 (515)
Q Consensus 254 ----~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~~~~~~~~~li 314 (515)
+.++..|+.+.+.|+..+- .....++........ ..++.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 4566677777776655432 222223322221111 346777777787777777666655443
No 260
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.01 E-value=2.6 Score=37.47 Aligned_cols=106 Identities=14% Similarity=0.197 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHH
Q 010215 306 NVVTYTTVMSYLAK-----SGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTST 380 (515)
Q Consensus 306 ~~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 380 (515)
|..+|...+..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+-+ ..+.|...
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK-----------------gkfiP~nv- 127 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK-----------------GKFIPQNV- 127 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc-----------------cccccHHH-
Confidence 44555555554432 34455556667777777888888888777764322 22222211
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHH
Q 010215 381 FNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDE 432 (515)
Q Consensus 381 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 432 (515)
+-...-.|- .+-+-+++++++|...| +.||..+-..|+.++.+.+-.-.
T Consensus 128 fQ~~F~HYP--~QQ~C~I~vLeqME~hG-VmPdkE~e~~lvn~FGr~~~p~~ 176 (406)
T KOG3941|consen 128 FQKVFLHYP--QQQNCAIKVLEQMEWHG-VMPDKEIEDILVNAFGRWNFPTK 176 (406)
T ss_pred HHHHHhhCc--hhhhHHHHHHHHHHHcC-CCCchHHHHHHHHHhccccccHH
Confidence 111111111 22344677777777777 77777777777777766665443
No 261
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.82 E-value=3.5 Score=34.62 Aligned_cols=95 Identities=13% Similarity=0.141 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHH--H
Q 010215 135 EIYEMMVDILGKVRQMDQMRALLEEMSKGHIV---TLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKN-TETMN--L 208 (515)
Q Consensus 135 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~--~ 208 (515)
..+..+.+.|.+.|+.+.|.+.|.++...... ..+.+..+++.....+++..+.....+....--.+. ...-+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 56778888999999999999999988775542 345556678888888888888888777654322221 11111 1
Q ss_pred HHH--HHHHcCCHHHHHHHHHHh
Q 010215 209 LLD--TLCKEGKVELARSVFLEL 229 (515)
Q Consensus 209 ll~--~~~~~~~~~~a~~~~~~~ 229 (515)
+.. .+...+++..|-+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 111 223456777777777664
No 262
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.79 E-value=0.2 Score=30.72 Aligned_cols=17 Identities=12% Similarity=0.180 Sum_probs=6.2
Q ss_pred HHHHcCCHHHHHHHHHH
Q 010215 212 TLCKEGKVELARSVFLE 228 (515)
Q Consensus 212 ~~~~~~~~~~a~~~~~~ 228 (515)
.|...|++++|+++|++
T Consensus 10 ~~~~~G~~~~A~~~~~~ 26 (44)
T PF13428_consen 10 AYRRLGQPDEAERLLRR 26 (44)
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 33333333333333333
No 263
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.76 E-value=1.5 Score=33.91 Aligned_cols=90 Identities=11% Similarity=-0.017 Sum_probs=41.1
Q ss_pred HHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCH
Q 010215 247 WCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNV---VTYTTVMSYLAKSGDF 323 (515)
Q Consensus 247 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~ 323 (515)
++..|+++.|++.|.+....- +.....||.-..++.-.|+.++|++=+++..+..-.-+. .+|.--...|...|+.
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 344455555555555544331 223444555555555555555555555544432111111 1222222334455566
Q ss_pred HHHHHHHHHHHhcC
Q 010215 324 EEAIRITEKMKIVG 337 (515)
Q Consensus 324 ~~a~~~~~~~~~~~ 337 (515)
+.|..=|....+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66665555555444
No 264
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.73 E-value=1.7 Score=33.68 Aligned_cols=90 Identities=13% Similarity=0.033 Sum_probs=44.0
Q ss_pred HHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccH---hHHHHHHHHHHhcCChh
Q 010215 213 LCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCV---ISYSTIIQSYCRQYNFS 289 (515)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~ 289 (515)
++..|+.+.|++.|.+...-.|.+...||.-..++.-.|+.++|++-+++..+..-..+. .+|..-...|...|+-+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 445555555555555544444555555555555555555555555555555443111111 12222223344455555
Q ss_pred HHHHHHHHHHHCC
Q 010215 290 KVYELLDEMQAQG 302 (515)
Q Consensus 290 ~A~~~~~~m~~~g 302 (515)
.|..=|+..-+.|
T Consensus 133 ~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 133 AARADFEAAAQLG 145 (175)
T ss_pred HHHHhHHHHHHhC
Confidence 5555555554443
No 265
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.49 E-value=3.2 Score=38.34 Aligned_cols=45 Identities=4% Similarity=0.011 Sum_probs=21.0
Q ss_pred ccCChhHHHHHHHHHHhCC--CCccHhHHHHHHHHHHhcCChhHHHH
Q 010215 249 KINRVDEAQWTIQEMKGHG--CHPCVISYSTIIQSYCRQYNFSKVYE 293 (515)
Q Consensus 249 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~ 293 (515)
...+.++|+..+.+-..+- ..--..++..+..+.++.|.+++++.
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 4455555555555443320 00112344555555556665555544
No 266
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.32 E-value=8.5 Score=37.46 Aligned_cols=24 Identities=8% Similarity=0.039 Sum_probs=11.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHH
Q 010215 381 FNTMITMFSHHGHHEKAFHVLEEM 404 (515)
Q Consensus 381 ~~~li~~~~~~g~~~~A~~~~~~m 404 (515)
...|+.++...+.+.++..++.+-
T Consensus 298 renLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 298 RENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHh
Confidence 334444444444444444444443
No 267
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.26 E-value=1 Score=40.49 Aligned_cols=76 Identities=9% Similarity=0.056 Sum_probs=37.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 010215 240 FNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQA-----QGCPPNVVTYTTVM 314 (515)
Q Consensus 240 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~~~li 314 (515)
+..++..+..+|+.+.+...++++.... +-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+.....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 3444444555555555555555554443 33444555555555555555555555544433 34555554444444
Q ss_pred HH
Q 010215 315 SY 316 (515)
Q Consensus 315 ~~ 316 (515)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 43
No 268
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.12 E-value=3.7 Score=32.72 Aligned_cols=61 Identities=20% Similarity=0.255 Sum_probs=27.0
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC
Q 010215 389 SHHGHHEKAFHVLEEMNKLEHCKP-NVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD 450 (515)
Q Consensus 389 ~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~ 450 (515)
.+.|++++|.+.|+.+...-+..| ....-..++.++.+.|++++|+ ..+++.++.++-.|+
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~-a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAI-AAYDRFIRLHPTHPN 82 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHH-HHHHHHHHhCCCCCC
Confidence 344555555555555544320000 1223344445555555555555 555555554443333
No 269
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.09 E-value=1.8 Score=31.81 Aligned_cols=60 Identities=12% Similarity=0.180 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 010215 186 DAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIH 245 (515)
Q Consensus 186 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 245 (515)
+..+-++.+....+.|++....+.+++|.+.+++..|.++++.++....+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 666777788888889999999999999999999999999999887655555546766654
No 270
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.08 E-value=3.4 Score=37.75 Aligned_cols=152 Identities=9% Similarity=-0.077 Sum_probs=107.9
Q ss_pred HHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH--HHH--HHHHHHHHHcCCH
Q 010215 144 LGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNT--ETM--NLLLDTLCKEGKV 219 (515)
Q Consensus 144 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~--~~ll~~~~~~~~~ 219 (515)
+-..|+..+|-..++++.+..|.+.-+....=.++..+|+.+.-...++++... ..+|. .+| ..+.-++..+|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 445788889999999998888766666655567888899999888888887653 12333 223 3334455678999
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCC----CccHhHHHHHHHHHHhcCChhHHHHHH
Q 010215 220 ELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGC----HPCVISYSTIIQSYCRQYNFSKVYELL 295 (515)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~ 295 (515)
++|++.-++..+-.+.|...-.++.+.+--.|+..++.+...+-...-- .....-|.. .-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~-Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHT-ALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHH-HHhhhcccchhHHHHHH
Confidence 9999998886665677888888999999999999999988776543210 001111222 23455678999999999
Q ss_pred HH
Q 010215 296 DE 297 (515)
Q Consensus 296 ~~ 297 (515)
+.
T Consensus 271 D~ 272 (491)
T KOG2610|consen 271 DR 272 (491)
T ss_pred HH
Confidence 86
No 271
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.94 E-value=5.7 Score=34.44 Aligned_cols=96 Identities=19% Similarity=0.148 Sum_probs=41.8
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHhC-CCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010215 237 AHTFNIFIHGWCKINRVDEAQWTIQEMKGH-GCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMS 315 (515)
Q Consensus 237 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 315 (515)
...+......+...+.+..+...+...... ........+......+...+++..+.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 344444445555555555555555544431 112233344444444444555555555555554432221 111111111
Q ss_pred -HHHhcCCHHHHHHHHHHH
Q 010215 316 -YLAKSGDFEEAIRITEKM 333 (515)
Q Consensus 316 -~~~~~g~~~~a~~~~~~~ 333 (515)
.+...|+++.+...+.+.
T Consensus 138 ~~~~~~~~~~~a~~~~~~~ 156 (291)
T COG0457 138 GALYELGDYEEALELYEKA 156 (291)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 344555555555555554
No 272
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.88 E-value=4.6 Score=33.19 Aligned_cols=125 Identities=13% Similarity=0.135 Sum_probs=75.5
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhhcC-CCCChh-hHHH--HHHHHHccC
Q 010215 177 RFSGAGQWEDAVRTFDELGTFGLEKNTE-TMNLLLDTLCKEGKVELARSVFLELKSC-IPPNAH-TFNI--FIHGWCKIN 251 (515)
Q Consensus 177 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-~~~~--li~~~~~~g 251 (515)
-+++.+..++|+.-|..+.+.|...-+. ............|+...|...|+++... ..|-.. -..- -.-.+...|
T Consensus 67 ~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 67 KLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccc
Confidence 3567788899999999998887543222 2223344566778888888888886532 122211 1111 112345567
Q ss_pred ChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 010215 252 RVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQ 301 (515)
Q Consensus 252 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 301 (515)
.++......+.+...+-+.-...-..|.-+-.+.|++.+|.++|..+...
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 77777776666655443333344455666666777777777777776653
No 273
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.84 E-value=8 Score=35.87 Aligned_cols=46 Identities=13% Similarity=0.155 Sum_probs=28.8
Q ss_pred HHcCCHHHHHHHHHH-hhc--CCCCChhhHHHHHHHHHccCChhHHHHH
Q 010215 214 CKEGKVELARSVFLE-LKS--CIPPNAHTFNIFIHGWCKINRVDEAQWT 259 (515)
Q Consensus 214 ~~~~~~~~a~~~~~~-~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~ 259 (515)
....+.++|+..+.. +.+ .....-.++..+..+.++.|.+++++..
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~ 65 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKF 65 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHH
Confidence 356677888877776 322 1223345667777777777877776543
No 274
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.80 E-value=11 Score=37.43 Aligned_cols=130 Identities=12% Similarity=0.080 Sum_probs=87.2
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 010215 136 IYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCK 215 (515)
Q Consensus 136 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 215 (515)
.++.+|.---.....+.++.+++.+....|....-+......-.+.|..+.+.++|++-.. |++.+...|...+..+..
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n 125 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKN 125 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhc
Confidence 4444444333334456677777777777776555555446666777888888888888776 456677777766665554
Q ss_pred -cCCHHHHHHHHHHhhcC---CCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 010215 216 -EGKVELARSVFLELKSC---IPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 216 -~~~~~~a~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 266 (515)
.|+.+.....|+....- .-.....|...|..-..++++.....++++..+.
T Consensus 126 ~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 126 NNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred cCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 46777777788775432 1234556777777777888888888888888864
No 275
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.72 E-value=4.9 Score=33.14 Aligned_cols=37 Identities=11% Similarity=0.104 Sum_probs=17.3
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010215 329 ITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVY 365 (515)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 365 (515)
+++.+.+.+++|+...+..+++.+.+.|++.....++
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll 52 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL 52 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3333444444455555555555555555444444443
No 276
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.71 E-value=6.7 Score=34.63 Aligned_cols=186 Identities=14% Similarity=0.067 Sum_probs=108.5
Q ss_pred cCCHHHHHHHHHHhh-hCHHHHHHHHHHhccCCCC-CCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHH-HHH
Q 010215 97 QPSHYLVNKLIHRFK-DDWKSALGIFRWAGSCPGY-EHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNT-IAK 173 (515)
Q Consensus 97 ~p~~~~~~~ll~~~~-~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~ 173 (515)
.|-...|+..+..+. +++..|...|+.+..++.+ +....+.-.++-++-+.+++++|+..+++.....+.+.++ +..
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 366778888888776 6999999999999755443 4466777788888999999999999999998876643332 111
Q ss_pred HHHHHHh-------cCCHH---HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHH
Q 010215 174 VMRRFSG-------AGQWE---DAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIF 243 (515)
Q Consensus 174 li~~~~~-------~g~~~---~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 243 (515)
-+.+++. ..+.. +|..-|+++... -||+ .-...|..-...+...+ ...=-.+
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS-------------~Ya~dA~~~i~~~~d~L---A~~Em~I 173 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNS-------------RYAPDAKARIVKLNDAL---AGHEMAI 173 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHH--CCCC-------------cchhhHHHHHHHHHHHH---HHHHHHH
Confidence 1444432 12222 333333333332 1221 11122222222111100 0001134
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCccH---hHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 010215 244 IHGWCKINRVDEAQWTIQEMKGHGCHPCV---ISYSTIIQSYCRQYNFSKVYELLDEMQAQ 301 (515)
Q Consensus 244 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 301 (515)
.+.|.+.|.+..|..-+++|.+. .+-+. ..+-.+..+|.+.|-.++|.+.-.-+...
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 56677777777777777777765 22222 33455667777777777777665555443
No 277
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.64 E-value=3.2 Score=34.91 Aligned_cols=62 Identities=13% Similarity=0.249 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 274 SYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPN--VVTYTTVMSYLAKSGDFEEAIRITEKMKI 335 (515)
Q Consensus 274 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 335 (515)
.+..+...|++.|+.++|++.|.++.+....+. ...+-.+|....-.+++..+.....+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345555556666666666666666555432222 22344455555555666665555555443
No 278
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.58 E-value=6.1 Score=33.84 Aligned_cols=161 Identities=9% Similarity=0.038 Sum_probs=89.6
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 010215 133 SSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDT 212 (515)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 212 (515)
-+.++|.|.-.+...|+++.|.+.|+...+-++...-+...-.-++.-.|++.-|.+-|...-..+ +.|+ |.++---
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D-~~DP--fR~LWLY 174 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD-PNDP--FRSLWLY 174 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcC-CCCh--HHHHHHH
Confidence 468899999999999999999999999988888654444333344455788988888777776543 2233 2222111
Q ss_pred H-HHcCCHHHHHHHHHHhhcCCCCChhhHHHHH-HHHHccCChhHHHHHHHHHHhCCCC------ccHhHHHHHHHHHHh
Q 010215 213 L-CKEGKVELARSVFLELKSCIPPNAHTFNIFI-HGWCKINRVDEAQWTIQEMKGHGCH------PCVISYSTIIQSYCR 284 (515)
Q Consensus 213 ~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~~li~~~~~ 284 (515)
+ -..-+..+|..-+.+--.+ .|..-|..-| ..|. |++. ...++++++...-. .=..||--+..-+..
T Consensus 175 l~E~k~dP~~A~tnL~qR~~~--~d~e~WG~~iV~~yL--gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~ 249 (297)
T COG4785 175 LNEQKLDPKQAKTNLKQRAEK--SDKEQWGWNIVEFYL--GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLS 249 (297)
T ss_pred HHHhhCCHHHHHHHHHHHHHh--ccHhhhhHHHHHHHH--hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhc
Confidence 1 1223455565544431112 2333333322 2222 2211 12233333321100 013456666777777
Q ss_pred cCChhHHHHHHHHHHHC
Q 010215 285 QYNFSKVYELLDEMQAQ 301 (515)
Q Consensus 285 ~g~~~~A~~~~~~m~~~ 301 (515)
.|+.++|..+|+-....
T Consensus 250 ~G~~~~A~~LfKLaian 266 (297)
T COG4785 250 LGDLDEATALFKLAVAN 266 (297)
T ss_pred cccHHHHHHHHHHHHHH
Confidence 77777777777766654
No 279
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.29 E-value=16 Score=37.97 Aligned_cols=144 Identities=16% Similarity=0.147 Sum_probs=85.8
Q ss_pred HHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 010215 139 MMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGK 218 (515)
Q Consensus 139 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 218 (515)
.-.+.+-+.|++++|...+-+.. +...+... +.-|....+..+-..+++.+.+.|+. +...-..|+.+|.+.++
T Consensus 373 kYgd~Ly~Kgdf~~A~~qYI~tI--~~le~s~V---i~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd 446 (933)
T KOG2114|consen 373 KYGDYLYGKGDFDEATDQYIETI--GFLEPSEV---IKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKD 446 (933)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHc--ccCChHHH---HHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcc
Confidence 33455567899999887775432 23333332 67777777788888888888888854 44555668889999888
Q ss_pred HHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 010215 219 VELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEM 298 (515)
Q Consensus 219 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 298 (515)
.+.-.+..+....|.- ..-....+..+.+.+-.++|..+-.+... .......+ +-..+++++|++++..+
T Consensus 447 ~~kL~efI~~~~~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 447 VEKLTEFISKCDKGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred hHHHHHHHhcCCCcce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 8877666655432211 11134455666666666666655554433 22222222 22346666666665543
No 280
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.12 E-value=7.3 Score=33.73 Aligned_cols=221 Identities=17% Similarity=0.175 Sum_probs=125.3
Q ss_pred CCHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc--CCCCChhhHHHHHHHHHccCChhHHHH
Q 010215 182 GQWEDAVRTFDELGTFGLE-KNTETMNLLLDTLCKEGKVELARSVFLELKS--CIPPNAHTFNIFIHGWCKINRVDEAQW 258 (515)
Q Consensus 182 g~~~~A~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~ 258 (515)
+....+...+......... .....+......+...+.+..+...+..... ..+.....+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4444555555554443211 1245555566666677777777766666432 344555666666666677777777777
Q ss_pred HHHHHHhCCCCccHhHHHHHHH-HHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 259 TIQEMKGHGCHPCVISYSTIIQ-SYCRQYNFSKVYELLDEMQAQGC--PPNVVTYTTVMSYLAKSGDFEEAIRITEKMKI 335 (515)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 335 (515)
.+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+....+
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 777776643222 122222223 67778888888888887754211 11233333344445566777777777777766
Q ss_pred cCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010215 336 VGSKP-DSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPD-TSTFNTMITMFSHHGHHEKAFHVLEEMNKL 407 (515)
Q Consensus 336 ~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 407 (515)
.. .. ....+..+...+...++++.|...+. ..... .|+ ...+..+...+...+..+++...+.+....
T Consensus 196 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 196 LN-PDDDAEALLNLGLLYLKLGKYEEALEYYE-KALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hC-cccchHHHHHhhHHHHHcccHHHHHHHHH-HHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 53 22 35566666666667777777777776 33332 222 233333333344555677777777766663
No 281
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.01 E-value=5.8 Score=32.31 Aligned_cols=13 Identities=23% Similarity=0.414 Sum_probs=5.1
Q ss_pred cCChhHHHHHHHH
Q 010215 285 QYNFSKVYELLDE 297 (515)
Q Consensus 285 ~g~~~~A~~~~~~ 297 (515)
.|+|++|+.+|++
T Consensus 57 r~~w~dA~rlLr~ 69 (160)
T PF09613_consen 57 RGDWDDALRLLRE 69 (160)
T ss_pred hCCHHHHHHHHHH
Confidence 3333333333333
No 282
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.89 E-value=6.3 Score=32.51 Aligned_cols=134 Identities=13% Similarity=0.102 Sum_probs=77.2
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 010215 188 VRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPN-AHTFNIFIHGWCKINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 188 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 266 (515)
++.++.+.+.+++|+...+..+++.+.+.|++....+++.. ++-+| ...-..|+..- +....+.++=-.|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~---~Vi~DSk~lA~~LLs~~---~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY---HVIPDSKPLACQLLSLG---NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh---cccCCcHHHHHHHHHhH---ccChHHHHHHHHHHHH
Confidence 35556666778888888888888888888887766555543 22233 33333333221 2223333333333322
Q ss_pred CCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 267 GCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKI 335 (515)
Q Consensus 267 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 335 (515)
=...+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++-..+
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0113566777778888888888887765322 222234566676677776665556555544
No 283
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.83 E-value=0.97 Score=40.66 Aligned_cols=100 Identities=20% Similarity=0.216 Sum_probs=73.9
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 010215 128 PGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGH----IVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNT 203 (515)
Q Consensus 128 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 203 (515)
.|.+.++.+...++..-....++++++..+-.+...- .+.|..+. .++ ++-.-++++++.++..=+..|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~-~ir-lllky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHT-WIR-LLLKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHH-HHH-HHHccChHHHHHHHhCcchhccccch
Confidence 4556666667777777777788888888887775421 23444442 233 33445677999999888899999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh
Q 010215 204 ETMNLLLDTLCKEGKVELARSVFLEL 229 (515)
Q Consensus 204 ~~~~~ll~~~~~~~~~~~a~~~~~~~ 229 (515)
++++.+++.+.+.+++.+|.++.-.+
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 99999999999999999888887763
No 284
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=91.66 E-value=3.9 Score=29.83 Aligned_cols=63 Identities=11% Similarity=0.149 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 010215 183 QWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIH 245 (515)
Q Consensus 183 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 245 (515)
+.-++.+-++.+....+.|++....+.+++|-+.+++..|.++++.++.....+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence 344666777777777888999999999999999999999999998877554445556665543
No 285
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.52 E-value=0.46 Score=27.54 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 010215 275 YSTIIQSYCRQYNFSKVYELLDE 297 (515)
Q Consensus 275 ~~~li~~~~~~g~~~~A~~~~~~ 297 (515)
|..|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555555555555555555
No 286
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.49 E-value=11 Score=34.48 Aligned_cols=60 Identities=10% Similarity=0.018 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhch
Q 010215 309 TYTTVMSYLAKSGDFE---EAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMP 370 (515)
Q Consensus 309 ~~~~li~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 370 (515)
++..++.+|...+..+ .|..+++.+.... +..+.++-.-+..+.+.++.+++.+++. .|.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~-~mi 148 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILM-RMI 148 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHH-HHH
Confidence 3444455555544433 2333444443321 1123333333444444555666665555 443
No 287
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.47 E-value=0.24 Score=28.34 Aligned_cols=26 Identities=12% Similarity=0.213 Sum_probs=11.1
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010215 162 KGHIVTLNTIAKVMRRFSGAGQWEDA 187 (515)
Q Consensus 162 ~~~~~~~~~~~~li~~~~~~g~~~~A 187 (515)
+.+|.++.++..+...|...|++++|
T Consensus 7 e~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 7 ELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 33344444444444444444444443
No 288
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.27 E-value=0.53 Score=27.29 Aligned_cols=26 Identities=8% Similarity=0.004 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010215 453 TYTLVIHGLCRANKCEWAYLLFKEMI 478 (515)
Q Consensus 453 ~~~~li~~~~~~g~~~~A~~~~~~m~ 478 (515)
+|..|...|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35677778888888888888887754
No 289
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.79 E-value=7.9 Score=31.56 Aligned_cols=64 Identities=22% Similarity=0.209 Sum_probs=40.6
Q ss_pred HHHHHHHHHHH---HcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010215 134 SEIYEMMVDIL---GKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTF 197 (515)
Q Consensus 134 ~~~~~~li~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 197 (515)
..+.+.||+.+ .+.++.+++..+++.+..-.|.....-..-...+.+.|+|.+|+++|+++.+.
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 33444444433 45677888888888876655543333333356677788888888888887664
No 290
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.60 E-value=1.9 Score=38.88 Aligned_cols=103 Identities=16% Similarity=0.189 Sum_probs=63.5
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCC---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC
Q 010215 336 VGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENG---VAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKP 412 (515)
Q Consensus 336 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 412 (515)
.|.+.+..+...++..-....+++++...+- .+.... ..|+.. -.+.++-+. .-++++++.++..=++-| +-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~Ly-KlRhs~~a~~~~~~~-~~~~irlll-ky~pq~~i~~l~npIqYG-iF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLY-KLRHSPNAWYLRNWT-IHTWIRLLL-KYDPQKAIYTLVNPIQYG-IFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHH-HHhcCcchhhhcccc-HHHHHHHHH-ccChHHHHHHHhCcchhc-ccc
Confidence 3445555666666666666677777777665 443311 111111 122233333 336777887777777777 788
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010215 413 NVQTFHPLLKSCFKTGKTDECLSQLLDDMVN 443 (515)
Q Consensus 413 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 443 (515)
|..+++.+++.+.+.+++.+|. ++...|+.
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa-~vvt~~~~ 163 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAA-SVVTEVMM 163 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHH-HHHHHHHH
Confidence 8888888888888888888877 66655554
No 291
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.45 E-value=0.69 Score=26.19 Aligned_cols=28 Identities=11% Similarity=0.211 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010215 379 STFNTMITMFSHHGHHEKAFHVLEEMNK 406 (515)
Q Consensus 379 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 406 (515)
..|..+..+|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566677777777777777777777766
No 292
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.12 E-value=15 Score=33.80 Aligned_cols=22 Identities=9% Similarity=0.197 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhCCCCCCCHHhHH
Q 010215 396 KAFHVLEEMNKLEHCKPNVQTFH 418 (515)
Q Consensus 396 ~A~~~~~~m~~~~~~~p~~~~~~ 418 (515)
++.++++.+.+.| +++....|.
T Consensus 200 r~~~l~~~l~~~~-~kik~~~yp 221 (297)
T PF13170_consen 200 RVIELYNALKKNG-VKIKYMHYP 221 (297)
T ss_pred HHHHHHHHHHHcC-Ccccccccc
Confidence 4555555555555 555444443
No 293
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.91 E-value=0.86 Score=25.78 Aligned_cols=28 Identities=11% Similarity=0.115 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 452 TTYTLVIHGLCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 452 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 479 (515)
..|..+..++...|++++|+..+++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566667777777777777777777764
No 294
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.69 E-value=1.5 Score=31.85 Aligned_cols=59 Identities=14% Similarity=0.182 Sum_probs=42.5
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010215 436 QLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEV 496 (515)
Q Consensus 436 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 496 (515)
+-++.+.. +.+.|++....+-+++|.|.+++.-|.++++-...+ ...+..+|..+++-.
T Consensus 28 r~mN~l~~-~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqei 86 (103)
T cd00923 28 RGLNNLFG-YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQEI 86 (103)
T ss_pred HHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHHH
Confidence 44455545 667889999999999999999999999999877642 233455676666543
No 295
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.48 E-value=13 Score=31.98 Aligned_cols=80 Identities=14% Similarity=-0.005 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010215 220 ELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQ 299 (515)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 299 (515)
..|.--|.+...-.|.-+.+||.|.--+...|+++.|.+.|+...+....-+-...|--|.. .--|++.-|.+=+...-
T Consensus 82 ~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d~~~fY 160 (297)
T COG4785 82 ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDDLLAFY 160 (297)
T ss_pred HHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHHHHHHH
Confidence 33333344332333445666777777777777777777777777665322122222222222 22466666665554444
Q ss_pred H
Q 010215 300 A 300 (515)
Q Consensus 300 ~ 300 (515)
+
T Consensus 161 Q 161 (297)
T COG4785 161 Q 161 (297)
T ss_pred h
Confidence 3
No 296
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.17 E-value=6.2 Score=39.15 Aligned_cols=150 Identities=16% Similarity=0.183 Sum_probs=103.6
Q ss_pred cCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010215 146 KVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSV 225 (515)
Q Consensus 146 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~ 225 (515)
-.|+++.|..++..+++ +....++..+-+.|..++|+++- +|+.. -.....+.|+++.|.++
T Consensus 598 mrrd~~~a~~vLp~I~k------~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~l 659 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK------EIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDL 659 (794)
T ss_pred hhccccccccccccCch------hhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHH
Confidence 35778888776665542 23334456677788888888752 33322 12345577899999888
Q ss_pred HHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 010215 226 FLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPP 305 (515)
Q Consensus 226 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 305 (515)
..+. .+..-|..|.++..+.+++..|.+.|....+ |..|+-.+...|+-+....+-....+.|..
T Consensus 660 a~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~- 724 (794)
T KOG0276|consen 660 AVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN- 724 (794)
T ss_pred HHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-
Confidence 7664 3566799999999999999999999987764 566777777788877666666666666633
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010215 306 NVVTYTTVMSYLAKSGDFEEAIRITEKM 333 (515)
Q Consensus 306 ~~~~~~~li~~~~~~g~~~~a~~~~~~~ 333 (515)
|. ..-+|...|+++++.+++..-
T Consensus 725 N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 725 NL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 32 234566789999988877654
No 297
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.87 E-value=14 Score=31.50 Aligned_cols=79 Identities=16% Similarity=0.125 Sum_probs=49.0
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh----cCCCCChhhHHHHHHHHHccCC
Q 010215 177 RFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELK----SCIPPNAHTFNIFIHGWCKINR 252 (515)
Q Consensus 177 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~ 252 (515)
...+.|+ ++|.+.|-.+...+.--++.....|...|. ..+.+++++++.+.. .+..+|+..+.+|+..+.+.|+
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3344444 567777777777665555555555554444 566777777776622 1235667777777777777777
Q ss_pred hhHHH
Q 010215 253 VDEAQ 257 (515)
Q Consensus 253 ~~~A~ 257 (515)
++.|.
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 77664
No 298
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.73 E-value=1.2 Score=25.09 Aligned_cols=27 Identities=11% Similarity=0.140 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 453 TYTLVIHGLCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 453 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 479 (515)
.|..+...+...|++++|.+.+++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455666677777777777777777664
No 299
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=88.59 E-value=28 Score=34.77 Aligned_cols=398 Identities=10% Similarity=0.090 Sum_probs=191.3
Q ss_pred ChhhHHHHHHHhcCCCCHHH---HHHHhhccccCCCCcCCHHHHHHHHHHhh------hCHHHHHHHHHHhccCCCCCCC
Q 010215 63 RLPDIDVIISKVHVGSSEDE---VFQSLKQDHVCNAIQPSHYLVNKLIHRFK------DDWKSALGIFRWAGSCPGYEHS 133 (515)
Q Consensus 63 ~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~g~~p~~~~~~~ll~~~~------~~~~~a~~~~~~~~~~~~~~~~ 133 (515)
+..-|+.+|.........+. ++..+. +-.|..+-| ...++ +..+.+..+|+.+. .|++.+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL------~kyPl~~gy---W~kfA~~E~klg~~~~s~~Vfergv--~aip~S 112 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFL------SKYPLCYGY---WKKFADYEYKLGNAENSVKVFERGV--QAIPLS 112 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHH------hhCccHHHH---HHHHHHHHHHhhhHHHHHHHHHHHH--HhhhhH
Confidence 44568888877655555533 333333 223433322 23332 36678899999986 578888
Q ss_pred HHHHHHHHHHHHc-CCChHHHHHHHHHHhcCC---C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 010215 134 SEIYEMMVDILGK-VRQMDQMRALLEEMSKGH---I---VTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETM 206 (515)
Q Consensus 134 ~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~---~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 206 (515)
...|...+..+.. .|+.+..++.|+....-. . +-|..| |..-..++++.....++++.++... ..|
T Consensus 113 vdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdky---ie~en~qks~k~v~~iyeRileiP~----~~~ 185 (577)
T KOG1258|consen 113 VDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKY---IEFENGQKSWKRVANIYERILEIPL----HQL 185 (577)
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHH---HHHHhccccHHHHHHHHHHHHhhhh----hHh
Confidence 8888888776654 678888999998886622 2 345555 6666788999999999999987421 112
Q ss_pred HHHHHHH---HHc------CCHHHHHHHHHHhhcC-----CCCChhhHHHHHHHH-HccCChhHHHHHHHHHHhCCCCcc
Q 010215 207 NLLLDTL---CKE------GKVELARSVFLELKSC-----IPPNAHTFNIFIHGW-CKINRVDEAQWTIQEMKGHGCHPC 271 (515)
Q Consensus 207 ~~ll~~~---~~~------~~~~~a~~~~~~~~~~-----~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~~~~~~~~~~ 271 (515)
+..-.-| .+. ...+++.++-...... ..+....+..-+.-- ...+..+++.....+...
T Consensus 186 ~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~------ 259 (577)
T KOG1258|consen 186 NRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS------ 259 (577)
T ss_pred HHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH------
Confidence 2222211 111 1233333322221100 001111111111100 001111122111111110
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHCC---C----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH
Q 010215 272 VISYSTIIQSYCRQYNFSKVYELLDEMQAQG---C----PPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRF 344 (515)
Q Consensus 272 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 344 (515)
..-..+-......+....++.-.+.- + .++..+|...+.--.+.|+.+.+.-+|+...-.- ..=...
T Consensus 260 -----~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~ef 333 (577)
T KOG1258|consen 260 -----IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEF 333 (577)
T ss_pred -----HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHH
Confidence 00011111222223333333322211 1 1234566667777777788877777777765321 111222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhchhCCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHh-HHHHH
Q 010215 345 FNCLIYTLGRASRVQEAVYVYQVEMPENGV--APDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQT-FHPLL 421 (515)
Q Consensus 345 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~-~~~ll 421 (515)
|--.+.-....|+.+-|..++. .-.+--. .|....+.+.+. -..|++..|..+++.+.+. . |+... -..-+
T Consensus 334 Wiky~~~m~~~~~~~~~~~~~~-~~~~i~~k~~~~i~L~~a~f~--e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~ 407 (577)
T KOG1258|consen 334 WIKYARWMESSGDVSLANNVLA-RACKIHVKKTPIIHLLEARFE--ESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKI 407 (577)
T ss_pred HHHHHHHHHHcCchhHHHHHHH-hhhhhcCCCCcHHHHHHHHHH--HhhccHHHHHHHHHHHHhh--C-CchhhhHHHHH
Confidence 3333333334477777776664 2222111 223333333322 2357888888888887764 3 55332 22223
Q ss_pred HHHHhcCChHHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010215 422 KSCFKTGKTDECLSQLLDDMVNK-HHLSLDITTYTLVIHG-----LCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDE 495 (515)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~p~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 495 (515)
....+.|+.+.+. . ..++.+. ....-+......+.-- +.-.++.+.|..++.++.+ -++++...|..++.-
T Consensus 408 ~~e~r~~~~~~~~-~-~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~-~~~~~k~~~~~~~~~ 484 (577)
T KOG1258|consen 408 NWERRKGNLEDAN-Y-KNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEAND-ILPDCKVLYLELIRF 484 (577)
T ss_pred hHHHHhcchhhhh-H-HHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh-cCCccHHHHHHHHHH
Confidence 3344566666543 2 2222210 1111121122222211 2234777888888888876 345666667777666
Q ss_pred HHhc
Q 010215 496 VKQK 499 (515)
Q Consensus 496 ~~~~ 499 (515)
+..+
T Consensus 485 ~~~~ 488 (577)
T KOG1258|consen 485 ELIQ 488 (577)
T ss_pred HHhC
Confidence 5443
No 300
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.55 E-value=11 Score=30.17 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=7.8
Q ss_pred ccCChhHHHHHHHHHHh
Q 010215 249 KINRVDEAQWTIQEMKG 265 (515)
Q Consensus 249 ~~g~~~~A~~~~~~~~~ 265 (515)
..|++++|.++|+++.+
T Consensus 56 ~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 56 ARGNYDEAARILRELLS 72 (153)
T ss_pred HcCCHHHHHHHHHhhhc
Confidence 44444444444444443
No 301
>PRK09687 putative lyase; Provisional
Probab=88.52 E-value=20 Score=32.86 Aligned_cols=234 Identities=8% Similarity=0.001 Sum_probs=122.8
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCCh----hHHHHHHHHHHHCCCCCCHHHH
Q 010215 235 PNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNF----SKVYELLDEMQAQGCPPNVVTY 310 (515)
Q Consensus 235 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~~~~~~~ 310 (515)
+|..+....+..+...|. +++...+..+... +|...-...+.++.+.|+. +++...+..+... .++...-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 444455555555555553 2333333333332 2444444455555555542 3456666555332 3444444
Q ss_pred HHHHHHHHhcCCH-----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHH
Q 010215 311 TTVMSYLAKSGDF-----EEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMI 385 (515)
Q Consensus 311 ~~li~~~~~~g~~-----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 385 (515)
...+.++...+.. ..+...+.... ..++..+-...+.++++.++.+ +...+. .+.. .+|...-...+
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~---~D~~~~VR~~a~~aLg~~~~~~-ai~~L~-~~L~---d~~~~VR~~A~ 180 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITA---FDKSTNVRFAVAFALSVINDEA-AIPLLI-NLLK---DPNGDVRNWAA 180 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHh---hCCCHHHHHHHHHHHhccCCHH-HHHHHH-HHhc---CCCHHHHHHHH
Confidence 4445554443321 12222222222 2345666666777777777644 444444 3332 24444555555
Q ss_pred HHHHhCC-CHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 010215 386 TMFSHHG-HHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRA 464 (515)
Q Consensus 386 ~~~~~~g-~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 464 (515)
.++.+.+ ....+...+..+.. .++..+-...+.++.+.|+ ..++ ..+-+..+ . ++ .....+.+++..
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg~~~~-~~av-~~Li~~L~-~---~~--~~~~a~~ALg~i 248 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLALRKD-KRVL-SVLIKELK-K---GT--VGDLIIEAAGEL 248 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHccCC-hhHH-HHHHHHHc-C---Cc--hHHHHHHHHHhc
Confidence 5555543 24456666666654 3566666667777777777 4556 44444444 1 22 234677888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010215 465 NKCEWAYLLFKEMIGHDITPRYQTCRLILDEVK 497 (515)
Q Consensus 465 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 497 (515)
|.. +|...+.++.+ -.||..+-...+.+|.
T Consensus 249 g~~-~a~p~L~~l~~--~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 249 GDK-TLLPVLDTLLY--KFDDNEIITKAIDKLK 278 (280)
T ss_pred CCH-hHHHHHHHHHh--hCCChhHHHHHHHHHh
Confidence 884 68888888774 3457766666666554
No 302
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=87.88 E-value=2.4 Score=31.27 Aligned_cols=78 Identities=14% Similarity=0.195 Sum_probs=44.5
Q ss_pred hHHHHHHHHHhcCChHHHH--HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010215 416 TFHPLLKSCFKTGKTDECL--SQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLIL 493 (515)
Q Consensus 416 ~~~~ll~~~~~~g~~~~A~--~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 493 (515)
.|..--..+....+.|. + ++-+..+.. +.+.|++....+.+.+|.|.+++..|.++++-...+ ..+...+|..++
T Consensus 10 eF~ary~~~F~~~~iD~-we~rrglN~l~~-~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~l 86 (108)
T PF02284_consen 10 EFDARYEKYFNRPDIDG-WELRRGLNNLFG-YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHHH-TT--H-HHHHHHHHHHTT-SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHH
T ss_pred HHHHHHHHHhCCccccH-HHHHHHHHHHhc-cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHH
Confidence 34444445555555553 2 133334433 567788999999999999999999999999887752 233333676666
Q ss_pred HHH
Q 010215 494 DEV 496 (515)
Q Consensus 494 ~~~ 496 (515)
+-+
T Consensus 87 qEl 89 (108)
T PF02284_consen 87 QEL 89 (108)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 303
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.66 E-value=13 Score=29.84 Aligned_cols=65 Identities=12% Similarity=0.107 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHH---cCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 010215 134 SEIYEMMVDILG---KVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFG 198 (515)
Q Consensus 134 ~~~~~~li~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 198 (515)
..+.+.||+... ..++.+++..+++.+..-.|.....-..-...+...|+|++|+++|+++.+.+
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 344444444332 36788888888888765444322222222456777888888888888887754
No 304
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.63 E-value=0.51 Score=26.96 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=10.3
Q ss_pred CCChhhHHHHHHHHHccCChhHH
Q 010215 234 PPNAHTFNIFIHGWCKINRVDEA 256 (515)
Q Consensus 234 ~~~~~~~~~li~~~~~~g~~~~A 256 (515)
|.+..+|+.+...|...|++++|
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhh
Confidence 33444444444444444444444
No 305
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.62 E-value=35 Score=34.82 Aligned_cols=47 Identities=9% Similarity=0.052 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHH--HHH-HHhcCCHHHHHHHHHHHhh
Q 010215 150 MDQMRALLEEMSKGHIVTLNTIAKV--MRR-FSGAGQWEDAVRTFDELGT 196 (515)
Q Consensus 150 ~~~A~~~~~~~~~~~~~~~~~~~~l--i~~-~~~~g~~~~A~~~~~~m~~ 196 (515)
...|.++++.....+.......... ..+ +....+.+.|+.+|..+.+
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAE 277 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 4567777776665544322222211 222 4455677777777777655
No 306
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.60 E-value=1.4 Score=24.70 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010215 380 TFNTMITMFSHHGHHEKAFHVLEEMNK 406 (515)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 406 (515)
.|..+...+...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 355566666667777777777766665
No 307
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.94 E-value=8.6 Score=32.65 Aligned_cols=77 Identities=10% Similarity=0.009 Sum_probs=55.8
Q ss_pred HcCCChHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCCCCHHHHHHHHHHHHHcCCHH
Q 010215 145 GKVRQMDQMRALLEEMSKGHIV-TLNTIAKVMRRFSGAGQWEDAVRTFDELGTF---GLEKNTETMNLLLDTLCKEGKVE 220 (515)
Q Consensus 145 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~~~~~~~~~ll~~~~~~~~~~ 220 (515)
.+.|+ +.|.+.|-.+...... +...... +..|....+.+++++++.+..+. +-.+|+..+.+|...+.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~a-LAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYA-LATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHH-HHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 44454 5688888777765554 4444444 44555577899999999887653 33678999999999999999998
Q ss_pred HHH
Q 010215 221 LAR 223 (515)
Q Consensus 221 ~a~ 223 (515)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 874
No 308
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.95 E-value=2.5 Score=25.02 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 452 TTYTLVIHGLCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 452 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 479 (515)
.+++.+...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677788888888888888888887764
No 309
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=84.86 E-value=40 Score=32.78 Aligned_cols=119 Identities=12% Similarity=0.003 Sum_probs=63.1
Q ss_pred CCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010215 147 VRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVF 226 (515)
Q Consensus 147 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 226 (515)
.|++..|-+-+....++.+..+.........+...|.++.+.+.+....+. +.....+...+++...+.|+++.|...-
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence 455444433333333333322222222245556667777777776655432 2334556666777777777777777776
Q ss_pred HHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 010215 227 LELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 227 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 266 (515)
..|...--.+..+........-..|-++++...++++...
T Consensus 381 ~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 381 EMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 6654433333333333333334456667777777666544
No 310
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.81 E-value=15 Score=36.63 Aligned_cols=97 Identities=19% Similarity=0.257 Sum_probs=48.8
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 010215 318 AKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKA 397 (515)
Q Consensus 318 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 397 (515)
.+.|+++.|.++..+. .+..-|..|.++..+.+++..|.+.|. ... -|..|+-.+...|+.+..
T Consensus 648 l~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~-~a~---------d~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFL-RAR---------DLGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHH-hhc---------chhhhhhhhhhcCChhHH
Confidence 3556666665554442 344456666666666666666666665 221 244445555555555544
Q ss_pred HHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 010215 398 FHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLL 438 (515)
Q Consensus 398 ~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 438 (515)
..+-....+.| +.|. ..-++...|++++++ +++
T Consensus 712 ~~la~~~~~~g--~~N~-----AF~~~~l~g~~~~C~-~lL 744 (794)
T KOG0276|consen 712 AVLASLAKKQG--KNNL-----AFLAYFLSGDYEECL-ELL 744 (794)
T ss_pred HHHHHHHHhhc--ccch-----HHHHHHHcCCHHHHH-HHH
Confidence 44444444444 1221 222344556666655 444
No 311
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.34 E-value=2.7 Score=24.91 Aligned_cols=28 Identities=29% Similarity=0.492 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010215 379 STFNTMITMFSHHGHHEKAFHVLEEMNK 406 (515)
Q Consensus 379 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 406 (515)
.+++.+...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566666777777777777777766644
No 312
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=83.66 E-value=7.4 Score=29.98 Aligned_cols=59 Identities=8% Similarity=0.196 Sum_probs=46.1
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHH
Q 010215 186 DAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFI 244 (515)
Q Consensus 186 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 244 (515)
+..+.++.+....+.|++.....-+++|-+.+|+..|.++|+.++....+...+|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 44556667777778899999999999999999999999999988876655555565554
No 313
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.66 E-value=55 Score=33.45 Aligned_cols=176 Identities=13% Similarity=0.085 Sum_probs=82.7
Q ss_pred HHHHHHHHHhccCCCCCCCHHHHHHH----HHH-HHcCCChHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHhcC
Q 010215 115 KSALGIFRWAGSCPGYEHSSEIYEMM----VDI-LGKVRQMDQMRALLEEMSK-------GHIVTLNTIAKVMRRFSGAG 182 (515)
Q Consensus 115 ~~a~~~~~~~~~~~~~~~~~~~~~~l----i~~-~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g 182 (515)
..+..+++.... .| +......+ ... ++...+.+.|...|..+.. .+ ...+...+...|.+..
T Consensus 229 ~~a~~~~~~~a~-~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 229 SEAFKYYREAAK-LG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGL 302 (552)
T ss_pred hHHHHHHHHHHh-hc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCC
Confidence 456677776642 22 22222222 222 4456788999999988755 22 2223344455555532
Q ss_pred -----CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHh-hcCCCCChhhHHHHHHHHH----ccC
Q 010215 183 -----QWEDAVRTFDELGTFGLEKNTETMNLLLDTLCK-EGKVELARSVFLEL-KSCIPPNAHTFNIFIHGWC----KIN 251 (515)
Q Consensus 183 -----~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~-~~~~~~~~~~~~~li~~~~----~~g 251 (515)
+.+.|+.++....+.| .|+.......+..... ..+...|.++|... +.|. .. .+-.+..+|. -..
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~--A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-IL--AIYRLALCYELGLGVER 378 (552)
T ss_pred CCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hH--HHHHHHHHHHhCCCcCC
Confidence 4566777777776665 3444433322222222 13455666666663 2321 11 1222222221 223
Q ss_pred ChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 010215 252 RVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQG 302 (515)
Q Consensus 252 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 302 (515)
+.+.|..++.+..++| .|...--...+..+.. +.++.+.-.+..+.+.|
T Consensus 379 ~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 5566666666666655 2221111122222222 55555555555444443
No 314
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.64 E-value=34 Score=30.98 Aligned_cols=70 Identities=19% Similarity=0.195 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCHHH
Q 010215 274 SYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKI-----VGSKPDSRF 344 (515)
Q Consensus 274 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~ 344 (515)
+++...+.|..+|.+.+|.++.+..+... +.+...+..++..++..||--.+.+-++.+.+ .|+..|..+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 34455667777777777777777776653 34666777777777777776666655555432 355555443
No 315
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=83.27 E-value=49 Score=32.57 Aligned_cols=181 Identities=10% Similarity=0.071 Sum_probs=120.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHH
Q 010215 304 PPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNT 383 (515)
Q Consensus 304 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 383 (515)
..|.....+++..+..+-.+.-.+.+-.+|...| .+-..|..++..|... ..++-..+|+ .+.+..+. |++.-..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWe-r~ve~dfn-Dvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWE-RLVEYDFN-DVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHH-HHHHhcch-hHHHHHH
Confidence 4567778888888888888888888888888764 4566778888888877 5566677777 66555432 4444444
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCCC------HHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 010215 384 MITMFSHHGHHEKAFHVLEEMNKLEHCKPN------VQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLV 457 (515)
Q Consensus 384 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~l 457 (515)
+..-|-+ ++.+.+..+|.++...- -|. ...|..+... -..+.+.-+ .+..++..+.|...-...+.-+
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yrf--I~~~q~~~i~evWeKL~~~--i~dD~D~fl-~l~~kiqt~lg~~~~~Vl~qdv 211 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYRF--IPRRQNAAIKEVWEKLPEL--IGDDKDFFL-RLQKKIQTKLGEGRGSVLMQDV 211 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHHh--cchhhhhhHHHHHHHHHHh--ccccHHHHH-HHHHHHHHhhccchHHHHHHHH
Confidence 5555544 88888888888887642 331 1133333321 145566666 7777777767766666777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010215 458 IHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEV 496 (515)
Q Consensus 458 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 496 (515)
-.-|....++++|+++++..++.+ ..|...-..++.-+
T Consensus 212 ~~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 212 YKKYSENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred HHHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 788888899999999999887754 34444444444433
No 316
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.60 E-value=2.5 Score=23.76 Aligned_cols=27 Identities=15% Similarity=0.054 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 453 TYTLVIHGLCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 453 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 479 (515)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666667777777777777776654
No 317
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=81.97 E-value=86 Score=34.45 Aligned_cols=106 Identities=15% Similarity=0.200 Sum_probs=58.3
Q ss_pred HHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCC
Q 010215 350 YTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGK 429 (515)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~ 429 (515)
+.+...+.+++|--.|+ ..-+ ..-.+.+|...|+|.+|+.+-.++.... .--..+-..|..-+...++
T Consensus 947 ~hL~~~~~~~~Aal~Ye-~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~--de~~~~a~~L~s~L~e~~k 1014 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYE-RCGK---------LEKALKAYKECGDWREALSLAAQLSEGK--DELVILAEELVSRLVEQRK 1014 (1265)
T ss_pred HHHHHhccccHHHHHHH-Hhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCH--HHHHHHHHHHHHHHHHccc
Confidence 33445566666666665 2211 1233566677777777777776653310 0011112455666677777
Q ss_pred hHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010215 430 TDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEM 477 (515)
Q Consensus 430 ~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 477 (515)
.-+|. ++..+... . ..-.+..|++...+++|.++....
T Consensus 1015 h~eAa-~il~e~~s----d-----~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1015 HYEAA-KILLEYLS----D-----PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred chhHH-HHHHHHhc----C-----HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 77776 66655544 1 223445566777777777766544
No 318
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.16 E-value=11 Score=32.35 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=44.7
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHH
Q 010215 138 EMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFG--LEKNTETMNLLLD 211 (515)
Q Consensus 138 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~ll~ 211 (515)
+..++-+.+.+++.+|+.+.+.-.+..+.+...-..++..++-.|+|++|..-++..-+.. ..+-..+|..+++
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3445556667777777777776666666655555566777777777777776665554321 1223445555554
No 319
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.92 E-value=41 Score=30.03 Aligned_cols=251 Identities=13% Similarity=0.158 Sum_probs=139.8
Q ss_pred CCChHHHHHHHHHHhcCCC--CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhhC---CC--CCCHHHHHHHHHHHHHcC
Q 010215 147 VRQMDQMRALLEEMSKGHI--VTL--NTIAKVMRRFSGAGQWEDAVRTFDELGTF---GL--EKNTETMNLLLDTLCKEG 217 (515)
Q Consensus 147 ~g~~~~A~~~~~~~~~~~~--~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~~~~~~~~~ll~~~~~~~ 217 (515)
..+.++|..-|.+..+-.. ..| .++..++..+.+.|++++..+.|.++... .+ .-+..+.|++++..+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3456677777776654222 233 45555677788888888887777776431 11 224556677777777677
Q ss_pred CHHHHHHHHHH-hhc-CCCCChh----hHHHHHHHHHccCChhHHHHHHHHHHhCCC----Cc-------cHhHHHHHHH
Q 010215 218 KVELARSVFLE-LKS-CIPPNAH----TFNIFIHGWCKINRVDEAQWTIQEMKGHGC----HP-------CVISYSTIIQ 280 (515)
Q Consensus 218 ~~~~a~~~~~~-~~~-~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~-------~~~~~~~li~ 280 (515)
+.+.....|+. +.. ....|.. +-+.|...|...|.+....+++.++...-- .. -...|..=|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 76666666654 211 0011111 224577778888888888888888754211 11 1346777788
Q ss_pred HHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHH-----HhcCCHHHHHHHHHHHH----hcCCCCCHHH--HHHH
Q 010215 281 SYCRQYNFSKVYELLDEMQAQ-GCPPNVVTYTTVMSYL-----AKSGDFEEAIRITEKMK----IVGSKPDSRF--FNCL 348 (515)
Q Consensus 281 ~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~-----~~~g~~~~a~~~~~~~~----~~~~~~~~~~--~~~l 348 (515)
.|....+-..-..+|++.... .-.|.+.... +|+-| .+.|.+++|..-|-+.. +.|.+..... |-.|
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 888888877778888876542 2344544433 34444 35677877754333332 3442222222 3344
Q ss_pred HHHHHhcCCHHHHHHHHH-hhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010215 349 IYTLGRASRVQEAVYVYQ-VEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEM 404 (515)
Q Consensus 349 i~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 404 (515)
..++.+.|- .-|+ ++.+-..-.|.....+.++.+|.. ++..+-..++..-
T Consensus 279 ANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~ 329 (440)
T KOG1464|consen 279 ANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILKSN 329 (440)
T ss_pred HHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHhh
Confidence 455554431 1111 011112224566778888888864 4565655555543
No 320
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=80.90 E-value=2.9 Score=23.46 Aligned_cols=27 Identities=15% Similarity=0.346 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010215 380 TFNTMITMFSHHGHHEKAFHVLEEMNK 406 (515)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 406 (515)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666667777777777766655
No 321
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.61 E-value=39 Score=29.59 Aligned_cols=18 Identities=17% Similarity=0.396 Sum_probs=11.1
Q ss_pred HHHcCCChHHHHHHHHHH
Q 010215 143 ILGKVRQMDQMRALLEEM 160 (515)
Q Consensus 143 ~~~~~g~~~~A~~~~~~~ 160 (515)
.++-.+++++|.++|.+.
T Consensus 23 lfgg~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERA 40 (288)
T ss_pred ccCCCcchHHHHHHHHHH
Confidence 344455677777777654
No 322
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=80.58 E-value=96 Score=34.11 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=12.9
Q ss_pred HHHHHHHHHHcC--CHHHHHHHHHHhh
Q 010215 206 MNLLLDTLCKEG--KVELARSVFLELK 230 (515)
Q Consensus 206 ~~~ll~~~~~~~--~~~~a~~~~~~~~ 230 (515)
...+|.+|.+.+ .++.+++...+++
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 344555666655 4555555444433
No 323
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=80.41 E-value=0.87 Score=36.72 Aligned_cols=83 Identities=17% Similarity=0.205 Sum_probs=44.6
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010215 243 FIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGD 322 (515)
Q Consensus 243 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 322 (515)
+++.+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 44555566666666666666665544445666666777777666666666665511 11222334455555555
Q ss_pred HHHHHHHHHH
Q 010215 323 FEEAIRITEK 332 (515)
Q Consensus 323 ~~~a~~~~~~ 332 (515)
++++.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 324
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.28 E-value=14 Score=31.85 Aligned_cols=54 Identities=11% Similarity=0.126 Sum_probs=25.4
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHH
Q 010215 210 LDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEM 263 (515)
Q Consensus 210 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 263 (515)
+..+.+.+.+.+++....+-.+.-|.|...-..+++.+|-.|++++|..-++..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 334444455555555554422223444444455555555555555555444443
No 325
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=79.84 E-value=0.66 Score=37.42 Aligned_cols=84 Identities=18% Similarity=0.212 Sum_probs=49.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 010215 384 MITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCR 463 (515)
Q Consensus 384 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 463 (515)
+|..+.+.+.++....+++.+...+ ...+....+.++..|++.+..++.. ++++.. ... -...++..|.+
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~~L~~ly~~~~~~~~l~-~~L~~~---~~y-----d~~~~~~~c~~ 82 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKEN-KENNPDLHTLLLELYIKYDPYEKLL-EFLKTS---NNY-----DLDKALRLCEK 82 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTS-TC-SHHHHHHHHHHHHCTTTCCHHH-HTTTSS---SSS------CTHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcc-cccCHHHHHHHHHHHHhcCCchHHH-HHcccc---ccc-----CHHHHHHHHHh
Confidence 5566666677777777777777655 3455666677777777776656544 444311 111 12345566667
Q ss_pred cCCHHHHHHHHHHH
Q 010215 464 ANKCEWAYLLFKEM 477 (515)
Q Consensus 464 ~g~~~~A~~~~~~m 477 (515)
.|.+++|.-++.++
T Consensus 83 ~~l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 83 HGLYEEAVYLYSKL 96 (143)
T ss_dssp TTSHHHHHHHHHCC
T ss_pred cchHHHHHHHHHHc
Confidence 77777777766665
No 326
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=79.70 E-value=48 Score=30.11 Aligned_cols=143 Identities=11% Similarity=0.100 Sum_probs=93.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHh-cCC-HHHHHHHHHHHh-hCCCCCCHHHHHHHHH
Q 010215 137 YEMMVDILGKVRQMDQMRALLEEMSKG--HIVTLNTIAKVMRRFSG-AGQ-WEDAVRTFDELG-TFGLEKNTETMNLLLD 211 (515)
Q Consensus 137 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~li~~~~~-~g~-~~~A~~~~~~m~-~~g~~~~~~~~~~ll~ 211 (515)
|..|+. +...+.+|.++|+..... -..+...+..+++.... .+. ...--++.+-+. ..|..++..+...++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 555553 344567888888854332 23467777777777766 222 112222222222 2345778888888999
Q ss_pred HHHHcCCHHHHHHHHHHhh-c-CCCCChhhHHHHHHHHHccCChhHHHHHHHH-----HHhCCCCccHhHHHHHHHHH
Q 010215 212 TLCKEGKVELARSVFLELK-S-CIPPNAHTFNIFIHGWCKINRVDEAQWTIQE-----MKGHGCHPCVISYSTIIQSY 282 (515)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~-~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~~~~~~li~~~ 282 (515)
.+++.+++..-.++++... . +...|...|..+|+.-.+.|+..-..++.++ +++.++..+...-..+-..+
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 9999999999999988843 3 4667888999999999999998877777765 34556666655544444433
No 327
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=79.66 E-value=24 Score=31.92 Aligned_cols=57 Identities=7% Similarity=-0.046 Sum_probs=28.5
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 010215 241 NIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEM 298 (515)
Q Consensus 241 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 298 (515)
+.....|..+|.+.+|.++.++..... +.+...|..++..+...|+--.|.+-++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 334445555555555555555554433 334445555555555555544444444443
No 328
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=79.32 E-value=25 Score=31.58 Aligned_cols=86 Identities=8% Similarity=0.073 Sum_probs=47.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-hhcCCCCChhhHHHHHHHHHc----
Q 010215 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLE-LKSCIPPNAHTFNIFIHGWCK---- 249 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~li~~~~~---- 249 (515)
|.+++..++|.+++.+.-+.-+..-+.-......-|-.|.+.+....+.++-.. +......+..-|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 667777777777776655543322122233334444457777777776666655 333222223335555555543
Q ss_pred -cCChhHHHHHH
Q 010215 250 -INRVDEAQWTI 260 (515)
Q Consensus 250 -~g~~~~A~~~~ 260 (515)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 57777777766
No 329
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.16 E-value=4.7 Score=24.64 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=17.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 010215 457 VIHGLCRANKCEWAYLLFKEMIGHD 481 (515)
Q Consensus 457 li~~~~~~g~~~~A~~~~~~m~~~~ 481 (515)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5567777777777777777776543
No 330
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=79.13 E-value=58 Score=30.76 Aligned_cols=66 Identities=14% Similarity=0.092 Sum_probs=44.4
Q ss_pred ccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 270 PCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPP---NVVTYTTVMSYLAKSGDFEEAIRITEKMKI 335 (515)
Q Consensus 270 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 335 (515)
....+|..+...+.+.|.++.|...+..+...+... ++.....-+...-..|+..+|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677778888888888888888888777643211 233344445556667888888888877776
No 331
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.08 E-value=2.7 Score=22.11 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=9.3
Q ss_pred HHHHHHHcCCChHHHHHHH
Q 010215 139 MMVDILGKVRQMDQMRALL 157 (515)
Q Consensus 139 ~li~~~~~~g~~~~A~~~~ 157 (515)
.+...+...|++++|+.++
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3444455555555555444
No 332
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.02 E-value=87 Score=32.67 Aligned_cols=23 Identities=13% Similarity=0.284 Sum_probs=14.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 010215 277 TIIQSYCRQYNFSKVYELLDEMQ 299 (515)
Q Consensus 277 ~li~~~~~~g~~~~A~~~~~~m~ 299 (515)
.|+..|...+++..|++++-..+
T Consensus 510 ~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 510 VLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHccChHHHHHHHHhcc
Confidence 36666666777777776665554
No 333
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.89 E-value=2.6 Score=23.35 Aligned_cols=25 Identities=20% Similarity=0.453 Sum_probs=15.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhh
Q 010215 172 AKVMRRFSGAGQWEDAVRTFDELGT 196 (515)
Q Consensus 172 ~~li~~~~~~g~~~~A~~~~~~m~~ 196 (515)
..+..++.+.|++++|.+.|+++.+
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3445566666666666666666654
No 334
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=78.67 E-value=26 Score=34.98 Aligned_cols=162 Identities=12% Similarity=-0.016 Sum_probs=73.1
Q ss_pred HHHHhhccccCCCCcCCHHHHHHHHHHhhh----CHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHc-CCChHHHHHHH
Q 010215 83 VFQSLKQDHVCNAIQPSHYLVNKLIHRFKD----DWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGK-VRQMDQMRALL 157 (515)
Q Consensus 83 ~~~~~~~~~~~~g~~p~~~~~~~ll~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~ 157 (515)
+-+.+.-.|....--|+..+...++....+ .-+-|-.++..+. +...|-=... .+...|.+ .|+...|...+
T Consensus 554 ~~~~l~~r~d~k~~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~--~~~~p~w~~l-n~aglywr~~gn~~~a~~cl 630 (886)
T KOG4507|consen 554 LVKELEVRMDLKAKMPDDHARKILLSRINNYTIPEEEIGSFLFHAIN--KPNAPIWLIL-NEAGLYWRAVGNSTFAIACL 630 (886)
T ss_pred HHHHhhhcccccccCchHHHHHHHHHHHhcccCcHHHHHHHHHHHhc--CCCCCeEEEe-ecccceeeecCCcHHHHHHH
Confidence 333343333344555677777766666553 2222333333332 1111100011 12222322 45666665555
Q ss_pred HHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 010215 158 EEMSKGHI-VTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPN 236 (515)
Q Consensus 158 ~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 236 (515)
.......+ .+.-.+..|...+.+.|....|-.++.+..... ...+.++-.+.+++....+++.|++.|++.....+.+
T Consensus 631 ~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~ 709 (886)
T KOG4507|consen 631 QRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKC 709 (886)
T ss_pred HHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCC
Confidence 54432222 111222333455555555556666555554432 2234445556666666666666666666643334444
Q ss_pred hhhHHHHHHHHH
Q 010215 237 AHTFNIFIHGWC 248 (515)
Q Consensus 237 ~~~~~~li~~~~ 248 (515)
...-+.|...-|
T Consensus 710 ~~~~~~l~~i~c 721 (886)
T KOG4507|consen 710 PECENSLKLIRC 721 (886)
T ss_pred hhhHHHHHHHHH
Confidence 555555544433
No 335
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.66 E-value=3.9 Score=22.57 Aligned_cols=26 Identities=23% Similarity=0.125 Sum_probs=17.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCC
Q 010215 208 LLLDTLCKEGKVELARSVFLELKSCI 233 (515)
Q Consensus 208 ~ll~~~~~~~~~~~a~~~~~~~~~~~ 233 (515)
.+..++.+.|+.++|.+.|+++....
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 35556667777777777777755443
No 336
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=78.48 E-value=96 Score=32.91 Aligned_cols=90 Identities=13% Similarity=0.168 Sum_probs=54.6
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHH-------HHHHHHH-HHHhcCCHHHHHHHHHhh---chhCCCCCCHHHHHHHHH
Q 010215 318 AKSGDFEEAIRITEKMKIVGSKPDSR-------FFNCLIY-TLGRASRVQEAVYVYQVE---MPENGVAPDTSTFNTMIT 386 (515)
Q Consensus 318 ~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~-~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~~~~~li~ 386 (515)
....++++|..+..++...-..|+.. .++++-. .....|++++|.++-+.. ..+.-..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45678888888888876542232221 2233221 123467788877776522 222223345666777777
Q ss_pred HHHhCCCHHHHHHHHHHHHhC
Q 010215 387 MFSHHGHHEKAFHVLEEMNKL 407 (515)
Q Consensus 387 ~~~~~g~~~~A~~~~~~m~~~ 407 (515)
+..-.|++++|..+..+..+.
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH
Confidence 778889999988888776654
No 337
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.30 E-value=17 Score=26.80 Aligned_cols=85 Identities=12% Similarity=0.067 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010215 114 WKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDE 193 (515)
Q Consensus 114 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 193 (515)
-++|..+-+|+... +- ....+--.-+..+...|++++|..+.+.....+...|-++ +-.+.|..+++...+.+
T Consensus 21 HqEA~tIAdwL~~~-~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~AL-----ce~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLK-GE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLAL-----CEWRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcC-Cc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHH-----HHHhhccHHHHHHHHHH
Confidence 45667777777422 11 1222223334556677777777777766543333333332 44456666666666666
Q ss_pred HhhCCCCCCHHHH
Q 010215 194 LGTFGLEKNTETM 206 (515)
Q Consensus 194 m~~~g~~~~~~~~ 206 (515)
|...| .|....|
T Consensus 94 la~sg-~p~lq~F 105 (115)
T TIGR02508 94 LAASG-DPRLQTF 105 (115)
T ss_pred HHhCC-CHHHHHH
Confidence 66665 4444333
No 338
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=78.23 E-value=14 Score=35.44 Aligned_cols=67 Identities=21% Similarity=0.190 Sum_probs=39.1
Q ss_pred HHHHHHHcCCCh---HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 010215 139 MMVDILGKVRQM---DQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTET 205 (515)
Q Consensus 139 ~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 205 (515)
.+++.|.+.++. -+|.-+++....+++.+...-..+++.|...|-...|.+.|..+.-..++.|.-.
T Consensus 185 ~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~ 254 (365)
T PF09797_consen 185 SLLDLYSKTKDSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLG 254 (365)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhH
Confidence 344444444443 3455566666666666666666667777777777777777766644334434333
No 339
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=78.22 E-value=33 Score=28.68 Aligned_cols=43 Identities=21% Similarity=0.301 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010215 288 FSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGS 338 (515)
Q Consensus 288 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 338 (515)
+++|.+.|++..+. .|+...|..-+.... +|-+++.++.+.+.
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHHHh
Confidence 45555666665554 677778877776653 46666777666543
No 340
>PRK11619 lytic murein transglycosylase; Provisional
Probab=77.95 E-value=93 Score=32.47 Aligned_cols=117 Identities=6% Similarity=-0.002 Sum_probs=64.6
Q ss_pred cCCHHHHHHHHHhhchh-CCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChH
Q 010215 355 ASRVQEAVYVYQVEMPE-NGVAPD--TSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTD 431 (515)
Q Consensus 355 ~g~~~~A~~~~~~~~~~-~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~ 431 (515)
..+.+.|...+. .... .+..+. ...+..+....+..+...+|...+...... ..+......-+......++++
T Consensus 254 r~d~~~A~~~~~-~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~ 329 (644)
T PRK11619 254 RQDAENARLMIP-SLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRR 329 (644)
T ss_pred HhCHHHHHHHHH-HHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHH
Confidence 445677888887 5422 222222 223444444444443355677777765442 234444444455555788887
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010215 432 ECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMI 478 (515)
Q Consensus 432 ~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 478 (515)
.+. ..+..|.....- ...-.-=+.+++...|+.++|..+|+++.
T Consensus 330 ~~~-~~i~~L~~~~~~--~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 330 GLN-TWLARLPMEAKE--KDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHH-HHHHhcCHhhcc--CHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 766 777776442221 11112224566666788888888888874
No 341
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=77.45 E-value=2.2 Score=33.26 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=27.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010215 461 LCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEV 496 (515)
Q Consensus 461 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 496 (515)
+...|.-.+|..+|++|+++|-+||. |..|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 44557778899999999999999985 77888765
No 342
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=75.83 E-value=86 Score=30.99 Aligned_cols=182 Identities=9% Similarity=0.068 Sum_probs=125.6
Q ss_pred CccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 010215 269 HPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCL 348 (515)
Q Consensus 269 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 348 (515)
+.|....-+++..+.++..+.-+..+..+|...| .+...|..++..|... ..++-..+++++.+.. -.|+..-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~d-fnDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD-FNDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc-chhHHHHHHH
Confidence 4566677888999999999999999999999864 3677899999999888 5577888999888865 3455566667
Q ss_pred HHHHHhcCCHHHHHHHHHhhchhCCCC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHH
Q 010215 349 IYTLGRASRVQEAVYVYQVEMPENGVA-----PDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKS 423 (515)
Q Consensus 349 i~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~ 423 (515)
+..|-+ ++.+.+...|. .....-++ .-...|.-++..- ..+.+..+.+..++....+..--.+.+.-+-.-
T Consensus 139 a~~yEk-ik~sk~a~~f~-Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFG-KALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHH-hchhhHHHHHH-HHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 776666 88888888887 44332111 1123565555422 356777777777776643244455666667778
Q ss_pred HHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 010215 424 CFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGL 461 (515)
Q Consensus 424 ~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~ 461 (515)
|....++++|+ +++..+.+ .. ..|.-.-..++..+
T Consensus 215 Ys~~eN~~eai-~Ilk~il~-~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 215 YSENENWTEAI-RILKHILE-HD-EKDVWARKEIIENL 249 (711)
T ss_pred hccccCHHHHH-HHHHHHhh-hc-chhhhHHHHHHHHH
Confidence 88899999999 89888877 22 22444444455444
No 343
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=75.78 E-value=1.9e+02 Score=34.79 Aligned_cols=321 Identities=7% Similarity=0.004 Sum_probs=156.3
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcCC--CCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 010215 140 MVDILGKVRQMDQMRALLEEMSKGH--IVTLNTIA-KVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKE 216 (515)
Q Consensus 140 li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 216 (515)
+..+=.+|+.+.+|.-.++.-.... ....+.+. .+...|..-+++|...-+...-.. .|+ .+ .-+......
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~-~qil~~e~~ 1462 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LY-QQILEHEAS 1462 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HH-HHHHHHHhh
Confidence 3344556777888888887741111 11222232 333477777887777766653111 222 22 233456677
Q ss_pred CCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHH-HHHHHhcCChhHHHHHH
Q 010215 217 GKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTI-IQSYCRQYNFSKVYELL 295 (515)
Q Consensus 217 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~ 295 (515)
|++..|...|+.+....++....++-++......|.++......+-..... .+....|+++ +.+--+.+++|...+..
T Consensus 1463 g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred ccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 888888888888766556667777777776667777777666555544331 2233333332 33335666777666554
Q ss_pred HHHHHCCCCCCHHHHHHH--HHHHHh--cCCHHHHHHHHHHHHhc--------CCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 010215 296 DEMQAQGCPPNVVTYTTV--MSYLAK--SGDFEEAIRITEKMKIV--------GSKPD-SRFFNCLIYTLGRASRVQEAV 362 (515)
Q Consensus 296 ~~m~~~g~~~~~~~~~~l--i~~~~~--~g~~~~a~~~~~~~~~~--------~~~~~-~~~~~~li~~~~~~g~~~~A~ 362 (515)
. +. +..+|... .....+ ..|.-.-.+..+.+++. +..-+ ...|..++....-..-.....
T Consensus 1542 ~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~ 1614 (2382)
T KOG0890|consen 1542 S---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIE 1614 (2382)
T ss_pred h---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 11 12222222 111111 11211111122222211 11111 134444444433322222222
Q ss_pred HHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-----CHHhHHHHHHHHHhcCChHHHHHHH
Q 010215 363 YVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKP-----NVQTFHPLLKSCFKTGKTDECLSQL 437 (515)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-----~~~~~~~ll~~~~~~g~~~~A~~~~ 437 (515)
.++. .-......-+..-|..-+..-....+..+-+--+++..-.....| -..+|....+.+...|.++.|...+
T Consensus 1615 ~l~~-~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nal 1693 (2382)
T KOG0890|consen 1615 ELKK-VSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNAL 1693 (2382)
T ss_pred Hhhc-cCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 2222 111111111222233322221111222222222222211110122 2456778888888899999998445
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010215 438 LDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGH 480 (515)
Q Consensus 438 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 480 (515)
++.+.. + .| ..+--...-+...|+...|..++++-.+.
T Consensus 1694 l~A~e~--r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1694 LNAKES--R-LP--EIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred Hhhhhc--c-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 544433 2 33 34666778889999999999999998853
No 344
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.45 E-value=1.2e+02 Score=32.57 Aligned_cols=39 Identities=5% Similarity=0.054 Sum_probs=27.3
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHh
Q 010215 246 GWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCR 284 (515)
Q Consensus 246 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 284 (515)
.|.+....+-+..+++.+....-.++..-.+.++..|+.
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 456667778888888888766545566667777777654
No 345
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=74.85 E-value=50 Score=29.76 Aligned_cols=88 Identities=16% Similarity=0.082 Sum_probs=42.4
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---
Q 010215 243 FIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAK--- 319 (515)
Q Consensus 243 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~--- 319 (515)
=|++++..+++.+++...-+--+.--+........-|-.|.+.+++..+.++-......--.-+...|.+++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 35566666666666655444433211122333444455566666666666655554442111122235555444432
Q ss_pred --cCCHHHHHHHH
Q 010215 320 --SGDFEEAIRIT 330 (515)
Q Consensus 320 --~g~~~~a~~~~ 330 (515)
.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 45566665554
No 346
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=74.55 E-value=7.7 Score=23.73 Aligned_cols=23 Identities=9% Similarity=0.261 Sum_probs=12.5
Q ss_pred HHHHHHccCChhHHHHHHHHHHh
Q 010215 243 FIHGWCKINRVDEAQWTIQEMKG 265 (515)
Q Consensus 243 li~~~~~~g~~~~A~~~~~~~~~ 265 (515)
|..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44555555555555555555554
No 347
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=74.35 E-value=41 Score=33.66 Aligned_cols=130 Identities=11% Similarity=-0.010 Sum_probs=81.0
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010215 220 ELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQ 299 (515)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 299 (515)
+.+-.++..|+....|-....|...-.+.-.|+...|...+.........-..+..-.|.....+.|...+|-.++.+..
T Consensus 590 e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l 669 (886)
T KOG4507|consen 590 EIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQAL 669 (886)
T ss_pred HHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 44555555566555555555554444444568888888877766543211122334455566666777778888887766
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 010215 300 AQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYT 351 (515)
Q Consensus 300 ~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 351 (515)
... ...+-++-.+.+++....+++.|++.|++..+.. +.+...-+.|...
T Consensus 670 ~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 670 AIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLI 719 (886)
T ss_pred hhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHH
Confidence 654 3355677778888888888888888888887754 3445555555443
No 348
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=74.27 E-value=60 Score=28.47 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=9.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCC
Q 010215 465 NKCEWAYLLFKEMIGHDITPR 485 (515)
Q Consensus 465 g~~~~A~~~~~~m~~~~~~p~ 485 (515)
+++++|.+++.++-+.|+.|.
T Consensus 252 ~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 252 RNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred ccHHHHHHHHHHHHHcCCCHH
Confidence 344444444444444444443
No 349
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=74.23 E-value=35 Score=25.66 Aligned_cols=87 Identities=18% Similarity=0.182 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 010215 322 DFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVL 401 (515)
Q Consensus 322 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 401 (515)
..++|..+.+.+...+. ....+--+-+..+.+.|++++|. .. ......||...|-++- -.+.|-.+++...+
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL--l~---~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l 92 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL--LL---PQCHCYPDLEPWAALC--AWKLGLASALESRL 92 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH--HH---HTTS--GGGHHHHHHH--HHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH--Hh---cccCCCccHHHHHHHH--HHhhccHHHHHHHH
Confidence 46777777777776552 33333334455677888888882 21 2233457777776653 35678888888888
Q ss_pred HHHHhCCCCCCCHHhHH
Q 010215 402 EEMNKLEHCKPNVQTFH 418 (515)
Q Consensus 402 ~~m~~~~~~~p~~~~~~ 418 (515)
.++...| .|....|.
T Consensus 93 ~rla~~g--~~~~q~Fa 107 (116)
T PF09477_consen 93 TRLASSG--SPELQAFA 107 (116)
T ss_dssp HHHCT-S--SHHHHHHH
T ss_pred HHHHhCC--CHHHHHHH
Confidence 8777766 55554443
No 350
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=74.12 E-value=14 Score=28.54 Aligned_cols=57 Identities=11% Similarity=0.102 Sum_probs=41.3
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010215 436 QLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILD 494 (515)
Q Consensus 436 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 494 (515)
+-+..... +.+.|++.....-++++.+.+++..|.++|+-... ...+....|-.++.
T Consensus 70 kglN~l~~-yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~-K~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 70 KGLNNLFD-YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD-KCGAQKQVYPYYVK 126 (149)
T ss_pred HHHHhhhc-cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH-hcccHHHHHHHHHH
Confidence 34444444 67888998888899999999999999999988765 33444445655554
No 351
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=73.23 E-value=51 Score=28.10 Aligned_cols=95 Identities=13% Similarity=0.069 Sum_probs=65.1
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCCCHH-----hHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC-HHHHHHHH
Q 010215 385 ITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQ-----TFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD-ITTYTLVI 458 (515)
Q Consensus 385 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-----~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~-~~~~~~li 458 (515)
..-+.+.|++++|..-|.+.+..- ++... .|..-..++.+.+.++.|+ .-..+.++ +.|+ ......-.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~c--p~~~~e~rsIly~Nraaa~iKl~k~e~aI-~dcsKaie---l~pty~kAl~RRA 175 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESC--PSTSTEERSILYSNRAAALIKLRKWESAI-EDCSKAIE---LNPTYEKALERRA 175 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhC--ccccHHHHHHHHhhhHHHHHHhhhHHHHH-HHHHhhHh---cCchhHHHHHHHH
Confidence 345788999999999999999853 44332 3444445678889999998 55555555 3333 12222234
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 010215 459 HGLCRANKCEWAYLLFKEMIGHDITPRYQ 487 (515)
Q Consensus 459 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 487 (515)
.+|-+...+++|++=|+++++ ..|...
T Consensus 176 eayek~ek~eealeDyKki~E--~dPs~~ 202 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILE--SDPSRR 202 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHH--hCcchH
Confidence 578888999999999999987 445544
No 352
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=73.20 E-value=35 Score=25.28 Aligned_cols=86 Identities=17% Similarity=0.200 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 010215 323 FEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLE 402 (515)
Q Consensus 323 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 402 (515)
.++|..+-+.+...+- ....+--+-+..+.+.|++++|..+.+ .. ..||...|-++-. -+.|..+++...+.
T Consensus 21 HqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~-~~----~~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 21 HQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGN-KL----CYPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcC-CC----CCchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 3455555555444321 122222222355667888888888776 44 3578888776643 35677777777777
Q ss_pred HHHhCCCCCCCHHhHH
Q 010215 403 EMNKLEHCKPNVQTFH 418 (515)
Q Consensus 403 ~m~~~~~~~p~~~~~~ 418 (515)
+|...| .|....|.
T Consensus 93 rla~sg--~p~lq~Fa 106 (115)
T TIGR02508 93 RLAASG--DPRLQTFV 106 (115)
T ss_pred HHHhCC--CHHHHHHH
Confidence 777766 56655554
No 353
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=73.00 E-value=11 Score=34.77 Aligned_cols=52 Identities=12% Similarity=0.013 Sum_probs=32.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010215 175 MRRFSGAGQWEDAVRTFDELGTFGLEK-NTETMNLLLDTLCKEGKVELARSVFLE 228 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 228 (515)
..-|.++|.+++|+..|...... .| |+.++..-..+|.+...+..|+.-...
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~ 156 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEA 156 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHH
Confidence 34566777777777777665553 34 666666666677776666655544443
No 354
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=72.94 E-value=86 Score=29.61 Aligned_cols=65 Identities=17% Similarity=0.279 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC---CHHhHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010215 377 DTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKP---NVQTFHPLLKSCFKTGKTDECLSQLLDDMVN 443 (515)
Q Consensus 377 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 443 (515)
...+|..++..+.+.|.++.|...+.++...+ ..+ ++.....-.+.....|+..+|+ ..++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~-~~~~~~~~~v~~e~akllw~~g~~~~Ai-~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLN-PSSESLLPRVFLEYAKLLWAQGEQEEAI-QKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccC-CcccCCCcchHHHHHHHHHHcCCHHHHH-HHHHHHHH
Confidence 44566677777777777777777777766532 111 2233333445556667777776 55555544
No 355
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=71.88 E-value=13 Score=26.12 Aligned_cols=47 Identities=15% Similarity=0.093 Sum_probs=22.1
Q ss_pred hcCChHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 010215 426 KTGKTDECLSQLLDDMVNKHHLSLD-ITTYTLVIHGLCRANKCEWAYLL 473 (515)
Q Consensus 426 ~~g~~~~A~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 473 (515)
+..+.++|+ ..|....++..-.|+ -.++..++.+++..|++.+++++
T Consensus 18 ~~~~~~~Al-~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQAL-QKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHH-HHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555 555555543222222 12344555555555555555443
No 356
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=71.69 E-value=63 Score=27.58 Aligned_cols=87 Identities=13% Similarity=0.090 Sum_probs=40.6
Q ss_pred HHcCCChHHHHHHHHHHhcCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 010215 144 LGKVRQMDQMRALLEEMSKGHIVTLN-----TIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGK 218 (515)
Q Consensus 144 ~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 218 (515)
+.+.|++++|..-|.......+.... .|..-..++.+.+.++.|++--.+.++.+ +........-..+|.+...
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhh
Confidence 44566666666666665554443221 12222344555555665555555554432 1112222222334555555
Q ss_pred HHHHHHHHHHhhc
Q 010215 219 VELARSVFLELKS 231 (515)
Q Consensus 219 ~~~a~~~~~~~~~ 231 (515)
++.|+.-|..+..
T Consensus 184 ~eealeDyKki~E 196 (271)
T KOG4234|consen 184 YEEALEDYKKILE 196 (271)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 357
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=71.33 E-value=80 Score=28.59 Aligned_cols=192 Identities=9% Similarity=0.079 Sum_probs=90.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHH----hhc-CCCCChhhHHH
Q 010215 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTET-------MNLLLDTLCKEGKVELARSVFLE----LKS-CIPPNAHTFNI 242 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-------~~~ll~~~~~~~~~~~a~~~~~~----~~~-~~~~~~~~~~~ 242 (515)
.+-..+.+++++|+..+.++...|+..|..+ ...+...|...|+...-.+.... |.. .-+....+..+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 3444555666666666666666655544333 33455566666655443333322 111 11223344445
Q ss_pred HHHHHHcc-CChhHHHHHHHHHHhCCCCcc-----HhHHHHHHHHHHhcCChhHHHHHHHH----HHHCCCCCCHHHHHH
Q 010215 243 FIHGWCKI-NRVDEAQWTIQEMKGHGCHPC-----VISYSTIIQSYCRQYNFSKVYELLDE----MQAQGCPPNVVTYTT 312 (515)
Q Consensus 243 li~~~~~~-g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~~~~~~~~~ 312 (515)
|+..+... ..++.-..+.....+...+.. ...=.-++..+.+.|.+.+|+.+... +.+.+-+|+..+...
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhl 169 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHL 169 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhh
Confidence 55544432 234444444444332210001 11224578889999999999987654 444444555444332
Q ss_pred HH-HHHHhcCCHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHH
Q 010215 313 VM-SYLAKSGDFEEAIRITEKMKI----VGSKPDSRFFNCLIYTL--GRASRVQEAVYVYQ 366 (515)
Q Consensus 313 li-~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~ 366 (515)
+= .+|....+..++..-+...+. .-++|-...---|+++. |...++..|...|-
T Consensus 170 lESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~ 230 (421)
T COG5159 170 LESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFI 230 (421)
T ss_pred hhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHH
Confidence 21 344444444444444433322 12233333333333332 33345556665554
No 358
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=71.17 E-value=1.3e+02 Score=30.95 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010215 463 RANKCEWAYLLFKEMIGHDITPRYQTCRLILDEV 496 (515)
Q Consensus 463 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 496 (515)
+.|++.+|.+.+-.+.+.++.|...-...|.++.
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~l 540 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCDAL 540 (566)
T ss_dssp ----------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHHH
Confidence 4478888888877777777777765554444443
No 359
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=71.11 E-value=74 Score=28.78 Aligned_cols=125 Identities=13% Similarity=0.173 Sum_probs=69.7
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCccHhH-------HHHHHHHHHhcCChhHHHHHHHHHH----HCCCCCCHHHH
Q 010215 242 IFIHGWCKINRVDEAQWTIQEMKGHGCHPCVIS-------YSTIIQSYCRQYNFSKVYELLDEMQ----AQGCPPNVVTY 310 (515)
Q Consensus 242 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~~~~~~~ 310 (515)
.+.+-..+.+++++|...+.++...|+..|..+ ...+...|...|++..--+...... +-.-+......
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 355666778889999999999888887766543 3456677777777765555443322 21111223344
Q ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 010215 311 TTVMSYLAK-SGDFEEAIRITEKMKIVGSKPD-----SRFFNCLIYTLGRASRVQEAVYVYQ 366 (515)
Q Consensus 311 ~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~ 366 (515)
.+++.-+.. ...++.-+.+.....+...... ...-.-++..+.+.|.+.+|..+.+
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn 149 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALIN 149 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 445544432 2345555555554443211111 1122345666667777777766654
No 360
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=70.67 E-value=1.1e+02 Score=30.10 Aligned_cols=95 Identities=6% Similarity=0.030 Sum_probs=49.0
Q ss_pred CCCHHhH-HHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCCHH
Q 010215 411 KPNVQTF-HPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCR--ANKCEWAYLLFKEMIGHDITPRYQ 487 (515)
Q Consensus 411 ~p~~~~~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~ 487 (515)
.|+..|+ +.++.-+...|-..+|. ..+..+... .+|+...|..+|..-.. +-+..-+.+.++.|... +..|+.
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ar-k~y~~l~~l--pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~-fg~d~~ 531 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKAR-KVYKSLQEL--PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE-FGADSD 531 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHH-HHHHHHHhC--CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH-hCCChH
Confidence 3444443 34455555666666666 666666551 23455566666554222 12255566666666542 125555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH
Q 010215 488 TCRLILDEVKQKHMYDAAEKIE 509 (515)
Q Consensus 488 ~~~~ll~~~~~~g~~~~a~~~~ 509 (515)
.|.-.+.-=...|..+.+-.++
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~ 553 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIY 553 (568)
T ss_pred HHHHHHHhhccCCCcccccHHH
Confidence 6655555444555555444443
No 361
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=69.91 E-value=40 Score=28.24 Aligned_cols=64 Identities=13% Similarity=0.232 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHhcCCCCCHH--------HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 010215 150 MDQMRALLEEMSKGHIVTLN--------TIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKE 216 (515)
Q Consensus 150 ~~~A~~~~~~~~~~~~~~~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 216 (515)
++.|..+|+.+.+...++.. .-...+..|.+.|.+++|.+++++... .|+......-+....+.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~ 156 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHc
Confidence 46667777766554333211 111234567777777777777777765 34444433333333333
No 362
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=69.27 E-value=1.5e+02 Score=30.87 Aligned_cols=183 Identities=13% Similarity=0.106 Sum_probs=94.4
Q ss_pred HHHHHHHHHHhcCCCCC----HHHHHHHHHHHH-hcCCHHHHHHHHHHHhhCCCCCCHH-----HHHHHHHHHHHcCCHH
Q 010215 151 DQMRALLEEMSKGHIVT----LNTIAKVMRRFS-GAGQWEDAVRTFDELGTFGLEKNTE-----TMNLLLDTLCKEGKVE 220 (515)
Q Consensus 151 ~~A~~~~~~~~~~~~~~----~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~~~~~-----~~~~ll~~~~~~~~~~ 220 (515)
..|++.++.+.+...++ ..+...+...+. ...++++|...+.+.....-.++.. .-..++..+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 35777777776433322 233444555555 5677888888887765433223222 1234455565655555
Q ss_pred HHHHHHHH-hhc--CCC--CChhhHHHH-HHHHHccCChhHHHHHHHHHHhCC---CCccHhHHHHHHHHHH--hcCChh
Q 010215 221 LARSVFLE-LKS--CIP--PNAHTFNIF-IHGWCKINRVDEAQWTIQEMKGHG---CHPCVISYSTIIQSYC--RQYNFS 289 (515)
Q Consensus 221 ~a~~~~~~-~~~--~~~--~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~--~~g~~~ 289 (515)
|.+..++ +.. ..+ +-...+.-+ +..+...++...|.+.++.+...- ..|-...+-.++.+.. +.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 7777776 322 111 112222323 223333367777777777765431 1333444444444443 345566
Q ss_pred HHHHHHHHHHHCCC---------CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 010215 290 KVYELLDEMQAQGC---------PPNVVTYTTVMSYLA--KSGDFEEAIRITEKMK 334 (515)
Q Consensus 290 ~A~~~~~~m~~~g~---------~~~~~~~~~li~~~~--~~g~~~~a~~~~~~~~ 334 (515)
++++.++.+..... .|-..+|..+++.++ ..|+++.+.+.++++.
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777776644221 223455666655544 4566666666555543
No 363
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.92 E-value=1.1e+02 Score=29.28 Aligned_cols=64 Identities=11% Similarity=0.062 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010215 134 SEIYEMMVDILGKVRQMDQMRALLEEMSKGHI---VTLNTIAKVMRRFSGAGQWEDAVRTFDELGTF 197 (515)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 197 (515)
...+.-+.+.|..+|+++.|.+.+-+...-.. ...+.+..+|..-.-.|+|.....+..+....
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 34567788889999999999999988554322 24455666677777778888777777766553
No 364
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=68.77 E-value=37 Score=31.42 Aligned_cols=93 Identities=18% Similarity=0.094 Sum_probs=63.1
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhH
Q 010215 211 DTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSK 290 (515)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 290 (515)
+-|.+.|.+++|+..|..-....|.|.+++..-..+|.+...+..|+.-.......+ ..-...|.--+.+-...|...+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHH
Confidence 468899999999999998555566699999999999999999988877766665432 1112234444444444556666
Q ss_pred HHHHHHHHHHCCCCCC
Q 010215 291 VYELLDEMQAQGCPPN 306 (515)
Q Consensus 291 A~~~~~~m~~~g~~~~ 306 (515)
|.+=++..+.. .|+
T Consensus 184 AKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 184 AKKDCETVLAL--EPK 197 (536)
T ss_pred HHHhHHHHHhh--Ccc
Confidence 66666555543 454
No 365
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=67.24 E-value=37 Score=25.72 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010215 274 SYSTIIQSYCRQYNFSKVYELLDEMQA 300 (515)
Q Consensus 274 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 300 (515)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 377788888888888888888887766
No 366
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=66.83 E-value=20 Score=29.94 Aligned_cols=62 Identities=15% Similarity=0.123 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010215 150 MDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQ-----------WEDAVRTFDELGTFGLEKNTETMNLLLDTL 213 (515)
Q Consensus 150 ~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-----------~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 213 (515)
+++|+.-|++...-+|....++..+..+|...+. +++|.+.|+.... ..|+...|+.-+...
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 4566666667777788888888777777765442 4455555555555 367777777776665
No 367
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=66.15 E-value=13 Score=19.46 Aligned_cols=26 Identities=12% Similarity=0.202 Sum_probs=15.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010215 381 FNTMITMFSHHGHHEKAFHVLEEMNK 406 (515)
Q Consensus 381 ~~~li~~~~~~g~~~~A~~~~~~m~~ 406 (515)
|..+...+...|++++|...|+...+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 44555556666666666666666554
No 368
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=65.85 E-value=32 Score=29.37 Aligned_cols=37 Identities=16% Similarity=0.036 Sum_probs=27.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 010215 446 HLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITP 484 (515)
Q Consensus 446 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 484 (515)
...|++..|..++..+...|+.++|.++.+++.. +-|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~--lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARR--LYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC
Confidence 3567777788778888888888888887777764 445
No 369
>PRK10941 hypothetical protein; Provisional
Probab=65.83 E-value=1.1e+02 Score=27.89 Aligned_cols=77 Identities=12% Similarity=0.031 Sum_probs=38.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 010215 382 NTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGL 461 (515)
Q Consensus 382 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~ 461 (515)
+.+-.+|.+.++++.|+.+.+.+.... +.+..-+.--.-.|.+.|.+..|. .=++...+.++-.|+.......+..+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~--P~dp~e~RDRGll~~qL~c~~~A~-~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD--PEDPYEIRDRGLIYAQLDCEHVAL-SDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHH-HHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 344455566666666666666666533 222333333334455666666665 44455544444455554444444333
No 370
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=64.63 E-value=30 Score=21.61 Aligned_cols=35 Identities=11% Similarity=-0.093 Sum_probs=25.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010215 460 GLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILD 494 (515)
Q Consensus 460 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 494 (515)
...+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 34466777788888888888888777777766654
No 371
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=64.63 E-value=29 Score=22.28 Aligned_cols=38 Identities=13% Similarity=0.208 Sum_probs=24.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010215 457 VIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEV 496 (515)
Q Consensus 457 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 496 (515)
+.-++.+.|++++|.+..+.+++ +.|+..-...|-...
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHHHH
Confidence 44567788888888888888875 667766655554433
No 372
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=64.61 E-value=37 Score=24.85 Aligned_cols=51 Identities=10% Similarity=0.183 Sum_probs=27.2
Q ss_pred cCCChHHHHHHHHHH----hcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010215 146 KVRQMDQMRALLEEM----SKGHIVT-----LNTIAKVMRRFSGAGQWEDAVRTFDELGT 196 (515)
Q Consensus 146 ~~g~~~~A~~~~~~~----~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 196 (515)
+.|++..|.+.+... ...+... ..+...+.......|++++|++.+++..+
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456666664443333 2222222 22333455566667777777777776654
No 373
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=64.12 E-value=10 Score=25.55 Aligned_cols=51 Identities=10% Similarity=0.207 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 010215 132 HSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAG 182 (515)
Q Consensus 132 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g 182 (515)
++...++.+++.+++..-.+++...+.+...++..+.++|..-++.+++..
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I~~d~~lK~vR~LaReQ 56 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSIDLDTFLKQVRSLAREQ 56 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 455678888888888888888888888888888888888877777776653
No 374
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=64.01 E-value=1.4e+02 Score=29.84 Aligned_cols=41 Identities=7% Similarity=-0.065 Sum_probs=24.1
Q ss_pred HHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHh
Q 010215 119 GIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMS 161 (515)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 161 (515)
+.+.++....|+..+......++.. ..|++.+|+.+++.+.
T Consensus 187 ~~L~~i~~~Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i 227 (484)
T PRK14956 187 DYSEKLCKIENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAI 227 (484)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHH
Confidence 3333333345666666666655543 3577888888887653
No 375
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=63.82 E-value=54 Score=23.84 Aligned_cols=58 Identities=19% Similarity=0.172 Sum_probs=33.0
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCC
Q 010215 161 SKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEK-NTETMNLLLDTLCKEGK 218 (515)
Q Consensus 161 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~ 218 (515)
...++.++.+...+...+...|++++|++.+-++.+..... +...-..++..+.-.|.
T Consensus 15 ~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 15 LAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 34566677777777777777777777777777776553222 33344455555554444
No 376
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=63.09 E-value=61 Score=24.58 Aligned_cols=27 Identities=19% Similarity=0.609 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010215 380 TFNTMITMFSHHGHHEKAFHVLEEMNK 406 (515)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 406 (515)
-|..++..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 377888888888888888888888776
No 377
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=63.00 E-value=2e+02 Score=30.01 Aligned_cols=92 Identities=8% Similarity=0.114 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhh-CHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 010215 101 YLVNKLIHRFKD-DWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFS 179 (515)
Q Consensus 101 ~~~~~ll~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 179 (515)
..|..++..++. +.+.-..++..+.... .....+..+++++..+|-.....-+.+.+..+......+...+.....
T Consensus 347 ~~f~~Lv~~lr~l~~~~L~~l~~~~~~~~---~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~~~~~ea~~~l~~l~~ 423 (618)
T PF01347_consen 347 SKFSRLVRLLRTLSYEDLEELYKQLKSKS---KKEQARKIFLDALPQAGTNPAVKFIKDLIKSKKLTDDEAAQLLASLPF 423 (618)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHHHTTS------HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-S-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 457777777765 5666667777664221 356778888888888888777777777666655555544443333333
Q ss_pred hc-CCHHHHHHHHHHHh
Q 010215 180 GA-GQWEDAVRTFDELG 195 (515)
Q Consensus 180 ~~-g~~~~A~~~~~~m~ 195 (515)
.. .--.+.++.+.+|.
T Consensus 424 ~~~~Pt~e~l~~l~~L~ 440 (618)
T PF01347_consen 424 HVRRPTEELLKELFELA 440 (618)
T ss_dssp T-----HHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHH
Confidence 33 22234444444443
No 378
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=62.76 E-value=1.1e+02 Score=27.03 Aligned_cols=113 Identities=9% Similarity=-0.054 Sum_probs=51.4
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHH
Q 010215 180 GAGQWEDAVRTFDELGTFGLEKNTE-TMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQW 258 (515)
Q Consensus 180 ~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 258 (515)
...+++.|+..|.+.+. +.|++. -|+.-+..+.+..+++.+..--.+...-.+..+.....+.........+++|..
T Consensus 22 ~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred chhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHH
Confidence 34455556665555544 345443 234444455555555555444433322222223333344445555566666666
Q ss_pred HHHHHHh----CCCCccHhHHHHHHHHHHhcCChhHHHHH
Q 010215 259 TIQEMKG----HGCHPCVISYSTIIQSYCRQYNFSKVYEL 294 (515)
Q Consensus 259 ~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 294 (515)
.+.+... ..+++-...+..|..+--+.-...+..++
T Consensus 100 ~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri 139 (284)
T KOG4642|consen 100 VLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRI 139 (284)
T ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHH
Confidence 6655522 22333344455554443333333333333
No 379
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=62.20 E-value=3.5e+02 Score=32.70 Aligned_cols=315 Identities=9% Similarity=-0.018 Sum_probs=159.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccC
Q 010215 174 VMRRFSGAGQWEDAVRTFDELGTFGLE--KNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKIN 251 (515)
Q Consensus 174 li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 251 (515)
+..+=.+.+.+.+|+..++.-.....+ .....|-.+...|...+++|....+..... .+... ...|-.....|
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~----a~~sl-~~qil~~e~~g 1463 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF----ADPSL-YQQILEHEASG 1463 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh----cCccH-HHHHHHHHhhc
Confidence 455666778888999888874211111 122334445558889999888877776411 12222 23444566789
Q ss_pred ChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHH
Q 010215 252 RVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTV-MSYLAKSGDFEEAIRIT 330 (515)
Q Consensus 252 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~~a~~~~ 330 (515)
++..|...|+.+.+.+ ++...+++-++......|.++.++-..+-.... ..+....++++ +.+--+.++++.....+
T Consensus 1464 ~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1464 NWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred cHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 9999999999998875 333677887777777788888877755544433 22223333332 33445677777766665
Q ss_pred HHHHhcCCCCCHHHHHH--HHHHHHhc--CCHHHHHHHHHhhchh--------CCCCC-CHHHHHHHHHHHHhCCCHHHH
Q 010215 331 EKMKIVGSKPDSRFFNC--LIYTLGRA--SRVQEAVYVYQVEMPE--------NGVAP-DTSTFNTMITMFSHHGHHEKA 397 (515)
Q Consensus 331 ~~~~~~~~~~~~~~~~~--li~~~~~~--g~~~~A~~~~~~~~~~--------~~~~~-~~~~~~~li~~~~~~g~~~~A 397 (515)
. ... ..+|.. +.....+. .+.-.-....+ .+.+ .+..- =...|..++....-. +.+.-
T Consensus 1542 ~--~~n-----~e~w~~~~~g~~ll~~~~kD~~~~~~~i~-~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~ 1612 (2382)
T KOG0890|consen 1542 S--DRN-----IEYWSVESIGKLLLRNKKKDEIATLDLIE-NSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENS 1612 (2382)
T ss_pred h--ccc-----ccchhHHHHHHHHHhhcccchhhHHHHHH-HHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHH
Confidence 5 111 111211 12222111 11111111111 1111 11110 112344443332211 11111
Q ss_pred HHHHHHHHhCCCCCCCHHh------HHHHHH---HHHhcCChHHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHhcCCH
Q 010215 398 FHVLEEMNKLEHCKPNVQT------FHPLLK---SCFKTGKTDECLSQLLDDMVNKHHLS-LDITTYTLVIHGLCRANKC 467 (515)
Q Consensus 398 ~~~~~~m~~~~~~~p~~~~------~~~ll~---~~~~~g~~~~A~~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~ 467 (515)
.+.+.. ..++..+ |..-+. .+.+..++--|.++.+.......+.. --..+|-...+...++|++
T Consensus 1613 ~~~l~~------~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~ 1686 (2382)
T KOG0890|consen 1613 IEELKK------VSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHL 1686 (2382)
T ss_pred HHHhhc------cCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccH
Confidence 111111 2232221 211221 12222222222222222222211111 1256788888888889999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010215 468 EWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMK 513 (515)
Q Consensus 468 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 513 (515)
+.|...+-...+.+ .|. .+--...-..+.|+...|+.+++...
T Consensus 1687 q~A~nall~A~e~r-~~~--i~~E~AK~lW~~gd~~~Al~~Lq~~l 1729 (2382)
T KOG0890|consen 1687 QRAQNALLNAKESR-LPE--IVLERAKLLWQTGDELNALSVLQEIL 1729 (2382)
T ss_pred HHHHHHHHhhhhcc-cch--HHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 99998887776644 333 34445566789999999999988754
No 380
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.18 E-value=1.5e+02 Score=28.43 Aligned_cols=28 Identities=7% Similarity=0.281 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010215 377 DTSTFNTMITMFSHHGHHEKAFHVLEEMNK 406 (515)
Q Consensus 377 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 406 (515)
.+..+..+...| .+++...+++++++..
T Consensus 305 ~Pqlr~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 305 EPQLREILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred ChHHHHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 344444444444 3567777777777654
No 381
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=60.99 E-value=1.4e+02 Score=27.57 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=17.5
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHH
Q 010215 411 KPNVQTFHPLLKSCFKTGKTDECLSQL 437 (515)
Q Consensus 411 ~p~~~~~~~ll~~~~~~g~~~~A~~~~ 437 (515)
.-|+..|..+..||.-.|+.+.+.+++
T Consensus 194 ~Fd~~~Y~~v~~AY~lLgk~~~~~dkl 220 (291)
T PF10475_consen 194 DFDPDKYSKVQEAYQLLGKTQSAMDKL 220 (291)
T ss_pred hCCHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 456667777777777777666655333
No 382
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=59.99 E-value=37 Score=21.78 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=22.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHH
Q 010215 383 TMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPL 420 (515)
Q Consensus 383 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 420 (515)
.+..++.+.|++++|.+..+.+.+ +.|+..-...|
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~---~eP~N~Qa~~L 40 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE---IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH---HTTS-HHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh---hCCCcHHHHHH
Confidence 345567788888888888888887 45765544433
No 383
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.97 E-value=1.3e+02 Score=27.00 Aligned_cols=48 Identities=10% Similarity=0.176 Sum_probs=25.0
Q ss_pred cCCHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010215 181 AGQWEDAVRTFDELGTFGLEKN---TETMNLLLDTLCKEGKVELARSVFLE 228 (515)
Q Consensus 181 ~g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~ 228 (515)
...+++|+.-|.+..+..-... ......++..+.+.+++++....|.+
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~q 90 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQ 90 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 3456677777766654321111 22333445556666666666555555
No 384
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=59.30 E-value=28 Score=23.17 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 010215 275 YSTIIQSYCRQYNFSKVYELLDEMQ 299 (515)
Q Consensus 275 ~~~li~~~~~~g~~~~A~~~~~~m~ 299 (515)
.-.+|.++...|++++|.++++++.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445566666666666666665554
No 385
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=59.03 E-value=38 Score=23.81 Aligned_cols=51 Identities=6% Similarity=0.089 Sum_probs=37.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 010215 458 IHGLCRANKCEWAYLLFKEMIGHDITPR--YQTCRLILDEVKQKHMYDAAEKIE 509 (515)
Q Consensus 458 i~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~ 509 (515)
+..| ...+.++|+..|+..++.-..|. -.++..+..++..-|++.+++++-
T Consensus 14 lkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 14 LKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 67788999999999987543333 236677788889999999888764
No 386
>PRK09687 putative lyase; Provisional
Probab=58.21 E-value=1.5e+02 Score=27.13 Aligned_cols=218 Identities=13% Similarity=0.084 Sum_probs=106.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCh----hHHHHHHHHHHhCCCCccHhHHH
Q 010215 201 KNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRV----DEAQWTIQEMKGHGCHPCVISYS 276 (515)
Q Consensus 201 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~~~~ 276 (515)
+|.......+.++...|..+-. .....+. ..+|...-...+.++.+.|+. +++...+..+... .++...-.
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~-~~l~~ll--~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVF-RLAIELC--SSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHH-HHHHHHH--hCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 4444445555555555542222 2222221 123555555556666666653 3456666555332 24444444
Q ss_pred HHHHHHHhcCCh-----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 010215 277 TIIQSYCRQYNF-----SKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYT 351 (515)
Q Consensus 277 ~li~~~~~~g~~-----~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 351 (515)
..+.++...+.. .++.+.+..... .++..+-...+.++.+.++ +.+...+-.+.+ .+|..+-...+.+
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~a 182 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFA 182 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHH
Confidence 455555444321 223333333332 2244555556666666665 345555555554 3444555555555
Q ss_pred HHhcC-CHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCCh
Q 010215 352 LGRAS-RVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKT 430 (515)
Q Consensus 352 ~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~ 430 (515)
+++.+ +.+.+...+. .+.. .++...-...+.++.+.|+ ..|+..+-+..+.+ + .....+.++...|..
T Consensus 183 Lg~~~~~~~~~~~~L~-~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~----~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 183 LNSNKYDNPDIREAFV-AMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG----T--VGDLIIEAAGELGDK 251 (280)
T ss_pred HhcCCCCCHHHHHHHH-HHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC----c--hHHHHHHHHHhcCCH
Confidence 55542 1334444444 3322 3466666666777777766 35555555555533 1 123455666666664
Q ss_pred HHHHHHHHHHHHH
Q 010215 431 DECLSQLLDDMVN 443 (515)
Q Consensus 431 ~~A~~~~~~~~~~ 443 (515)
+|+ ..+..+.+
T Consensus 252 -~a~-p~L~~l~~ 262 (280)
T PRK09687 252 -TLL-PVLDTLLY 262 (280)
T ss_pred -hHH-HHHHHHHh
Confidence 456 55666554
No 387
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=56.99 E-value=54 Score=27.95 Aligned_cols=43 Identities=7% Similarity=-0.072 Sum_probs=35.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 470 AYLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMKK 514 (515)
Q Consensus 470 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 514 (515)
..+..++..+ ..|++.++..++.++...|+.++|.+..+.+..
T Consensus 130 ~~~~a~~~l~--~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 130 YIEWAERLLR--RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred HHHHHHHHHH--hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444455543 689999999999999999999999999988765
No 388
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=56.82 E-value=72 Score=23.00 Aligned_cols=41 Identities=7% Similarity=0.064 Sum_probs=16.6
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010215 155 ALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELG 195 (515)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 195 (515)
++++.+.+++..+.+....+-.+--..|+.+.|.+++..+.
T Consensus 23 ~v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~ 63 (88)
T cd08819 23 DVCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV 63 (88)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc
Confidence 34444444444443333322222223344455555554444
No 389
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=56.79 E-value=2e+02 Score=28.23 Aligned_cols=109 Identities=8% Similarity=0.067 Sum_probs=77.6
Q ss_pred HHHHhhccccCCCCcCCHHHHHHHHHHhhhCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhc
Q 010215 83 VFQSLKQDHVCNAIQPSHYLVNKLIHRFKDDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSK 162 (515)
Q Consensus 83 ~~~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 162 (515)
++..+++. .-.|+...+-++|..-.++.+.+++....+.. -+.....+...+++..-+.|+++.|..+-+.|..
T Consensus 312 ~~~~lr~~----~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~ 385 (831)
T PRK15180 312 LFAALRNQ----QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLS 385 (831)
T ss_pred HHHHHHhC----CCCchhhHHHHHHHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 55555543 44578888888888777788888877766532 2234566788899999999999999999988887
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010215 163 GHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTF 197 (515)
Q Consensus 163 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 197 (515)
....+.+.........-+.|-++++...++++...
T Consensus 386 ~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 386 NEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred cccCChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 66666665543333444567788888888887654
No 390
>PHA02875 ankyrin repeat protein; Provisional
Probab=55.76 E-value=2.1e+02 Score=27.92 Aligned_cols=140 Identities=17% Similarity=0.106 Sum_probs=63.4
Q ss_pred HHHHcCCHHHHHHHHHHhhcCCCCChhh--HHHHHHHHHccCChhHHHHHHHHHHhCCCCccHh--HHHHHHHHHHhcCC
Q 010215 212 TLCKEGKVELARSVFLELKSCIPPNAHT--FNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVI--SYSTIIQSYCRQYN 287 (515)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~ 287 (515)
..+..|+.+.+..+++. |..++... ....+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+
T Consensus 8 ~A~~~g~~~iv~~Ll~~---g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 8 DAILFGELDIARRLLDI---GINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHHhCCHHHHHHHHHC---CCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 34556777666655543 43343321 233445555666654 334444455444432 11233445556677
Q ss_pred hhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHhcCCHHHHH
Q 010215 288 FSKVYELLDEMQAQGCPPNVV---TYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRF--FNCLIYTLGRASRVQEAV 362 (515)
Q Consensus 288 ~~~A~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~ 362 (515)
.+.+..++ +.|...+.. .-.+.+...+..|+.+ +.+.+.+.|..++... -...+...+..|+.+-..
T Consensus 81 ~~~v~~Ll----~~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~ 152 (413)
T PHA02875 81 VKAVEELL----DLGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIE 152 (413)
T ss_pred HHHHHHHH----HcCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 66544443 333221111 1123334445556653 3444444554443221 112233444566766655
Q ss_pred HHHH
Q 010215 363 YVYQ 366 (515)
Q Consensus 363 ~~~~ 366 (515)
.+++
T Consensus 153 ~Ll~ 156 (413)
T PHA02875 153 LLID 156 (413)
T ss_pred HHHh
Confidence 5554
No 391
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=54.83 E-value=1.9e+02 Score=27.17 Aligned_cols=61 Identities=10% Similarity=-0.017 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 010215 186 DAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGW 247 (515)
Q Consensus 186 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 247 (515)
.-+.++++..+.. +.+.......+..+.+..+.+...+.++++....+.+...|...++..
T Consensus 49 ~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~ 109 (321)
T PF08424_consen 49 RKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFR 109 (321)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 3444555544442 234444555555555555555555555554444444555555555443
No 392
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=54.70 E-value=34 Score=22.80 Aligned_cols=21 Identities=43% Similarity=0.400 Sum_probs=8.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 010215 457 VIHGLCRANKCEWAYLLFKEM 477 (515)
Q Consensus 457 li~~~~~~g~~~~A~~~~~~m 477 (515)
+|.+|...|++++|.++++++
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 334444444444444444333
No 393
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=54.25 E-value=1.6e+02 Score=26.08 Aligned_cols=47 Identities=19% Similarity=0.336 Sum_probs=28.6
Q ss_pred CccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010215 269 HPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYL 317 (515)
Q Consensus 269 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 317 (515)
.|.+.....++..|. .+++++|.+.+.++-+.|+.|.. ..+++.+.+
T Consensus 236 ~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~ 282 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED-IITTLFRVV 282 (333)
T ss_pred CCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHH
Confidence 355555566665543 46678888888888777777654 233444443
No 394
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=53.79 E-value=90 Score=25.18 Aligned_cols=32 Identities=16% Similarity=0.227 Sum_probs=14.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 010215 278 IIQSYCRQYNFSKVYELLDEMQAQGCPPNVVT 309 (515)
Q Consensus 278 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 309 (515)
++..+.+.++.-.|.++++++.+.+...+..|
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 34444444444455555555554443333333
No 395
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=53.54 E-value=27 Score=31.79 Aligned_cols=42 Identities=31% Similarity=0.442 Sum_probs=26.5
Q ss_pred CCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHH
Q 010215 376 PDTS-TFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFH 418 (515)
Q Consensus 376 ~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~ 418 (515)
||.. -|+..|....+.||+++|+.++++.++.| ..--..+|.
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG-~~~Ar~tFi 296 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLG-STSARSTFI 296 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CchHHHHHH
Confidence 4444 34567777777777777777777777777 433334443
No 396
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=53.38 E-value=2.2e+02 Score=27.61 Aligned_cols=103 Identities=14% Similarity=0.109 Sum_probs=60.3
Q ss_pred cCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHh-------hCCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010215 162 KGHIVTLNTI--AKVMRRFSGAGQWEDAVRTFDELG-------TFGLEK-----NTETMNLLLDTLCKEGKVELARSVFL 227 (515)
Q Consensus 162 ~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~-------~~g~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~ 227 (515)
+.++..|+++ ..++..+....+..+-++..+... +.|..| .-++...|++.++-.||+..|+++++
T Consensus 67 ~~~~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~ 146 (404)
T PF10255_consen 67 ENNPDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLE 146 (404)
T ss_pred hhccCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhh
Confidence 3445455443 344566666666666655554421 111111 12344667788888899988888887
Q ss_pred HhhcC--------CCCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 010215 228 ELKSC--------IPPNAHTFNIFIHGWCKINRVDEAQWTIQEMK 264 (515)
Q Consensus 228 ~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 264 (515)
.+.-+ ..-.+.++-.+.-+|.-.+++.+|.+.|....
T Consensus 147 ~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 147 NIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred ccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 74321 12334555666667777777777777777654
No 397
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=53.37 E-value=28 Score=31.72 Aligned_cols=28 Identities=32% Similarity=0.295 Sum_probs=13.6
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhCC
Q 010215 240 FNIFIHGWCKINRVDEAQWTIQEMKGHG 267 (515)
Q Consensus 240 ~~~li~~~~~~g~~~~A~~~~~~~~~~~ 267 (515)
|+..|....+.||+++|+.++++..+.|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG 287 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLG 287 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3444444444455555555554444444
No 398
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=52.26 E-value=19 Score=28.33 Aligned_cols=33 Identities=12% Similarity=0.200 Sum_probs=25.1
Q ss_pred HccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHH
Q 010215 248 CKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSY 282 (515)
Q Consensus 248 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 282 (515)
-+.|.-..|..+|.+|.+.|-+|| .|+.|+...
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 345777888899999999987777 477777653
No 399
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.90 E-value=1.5e+02 Score=25.28 Aligned_cols=21 Identities=10% Similarity=0.001 Sum_probs=9.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 010215 459 HGLCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 459 ~~~~~~g~~~~A~~~~~~m~~ 479 (515)
+.+...|+-++|..-|++.++
T Consensus 167 Dill~kg~k~~Ar~ay~kAl~ 187 (207)
T COG2976 167 DILLAKGDKQEARAAYEKALE 187 (207)
T ss_pred hHHHHcCchHHHHHHHHHHHH
Confidence 334444444444444444443
No 400
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=51.28 E-value=2e+02 Score=26.98 Aligned_cols=54 Identities=17% Similarity=0.206 Sum_probs=28.2
Q ss_pred HhcCChHHHHHHHHHHHHHcCC--CCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 425 FKTGKTDECLSQLLDDMVNKHH--LSLDITTYT--LVIHGLCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 425 ~~~g~~~~A~~~~~~~~~~~~~--~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~ 479 (515)
-+.++.++|+ ++++++.++.. -.|+...|. .+..++...|+.+++.+.+++..+
T Consensus 86 ~~~~D~~~al-~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 86 EQISDKDEAL-EFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHhccHHHHH-HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3444566666 56665554322 123444332 344555566666666666666554
No 401
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=51.23 E-value=1.8e+02 Score=25.84 Aligned_cols=119 Identities=11% Similarity=0.072 Sum_probs=66.1
Q ss_pred HHhcCCHHHHHHHHHhhchhCCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHh-HHHHHHHHHhcCC
Q 010215 352 LGRASRVQEAVYVYQVEMPENGVAPDTS-TFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQT-FHPLLKSCFKTGK 429 (515)
Q Consensus 352 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~-~~~ll~~~~~~g~ 429 (515)
|....++..|...|.+.+. +.|+.. -|+.-+.++.+..+++.+..--.+..+ +.||..- ...+..+......
T Consensus 20 ~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq---l~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ---LDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred ccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh---cChHHHHHHHHHHHHHHhhcc
Confidence 4445567777776662222 356663 345556677777777777776666666 4566543 3334445566677
Q ss_pred hHHHHHHHHHHHHH---cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010215 430 TDECLSQLLDDMVN---KHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEM 477 (515)
Q Consensus 430 ~~~A~~~~~~~~~~---~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 477 (515)
+++|+ ..+.+..+ ...+.+....+..|..+--..=...+..++.++.
T Consensus 94 ~~eaI-~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 94 YDEAI-KVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred ccHHH-HHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 77777 55555532 2334444555665555433333344444544443
No 402
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=50.92 E-value=59 Score=20.26 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=26.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 010215 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLD 211 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 211 (515)
+....+.|...++...+++|.+.|+..+...+..++.
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3444567777778888888887787777777766654
No 403
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=50.68 E-value=2.1e+02 Score=26.61 Aligned_cols=88 Identities=8% Similarity=0.145 Sum_probs=49.8
Q ss_pred HHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh----
Q 010215 122 RWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKG--HIVTLNTIAKVMRRFSGAGQWEDAVRTFDELG---- 195 (515)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---- 195 (515)
+.+.+..++..|...++.+...= ..++++-.+..+...+. ...-..++......|++-|+-+.|++.+.+-.
T Consensus 58 e~lce~~~i~~D~~~l~~m~~~n--eeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktv 135 (393)
T KOG0687|consen 58 EYLCESLVIKLDQDLLNSMKKAN--EEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTV 135 (393)
T ss_pred HHHHhhcceeccHHHHHHHHHhh--HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 33333455566766666665432 22333333334443332 12345566677788888899888888876653
Q ss_pred hCCCCCCHHHHHHHHH
Q 010215 196 TFGLEKNTETMNLLLD 211 (515)
Q Consensus 196 ~~g~~~~~~~~~~ll~ 211 (515)
..|.+.|+..+..-+.
T Consensus 136 s~g~kiDVvf~~iRlg 151 (393)
T KOG0687|consen 136 SLGHKIDVVFYKIRLG 151 (393)
T ss_pred hcccchhhHHHHHHHH
Confidence 3466667766654443
No 404
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=50.63 E-value=1.9e+02 Score=26.09 Aligned_cols=100 Identities=14% Similarity=0.047 Sum_probs=43.0
Q ss_pred cCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH----HHHhhCCCCCCHHHHHHHHHHHHHcCCHH-
Q 010215 146 KVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTF----DELGTFGLEKNTETMNLLLDTLCKEGKVE- 220 (515)
Q Consensus 146 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~~~~~~~~~ll~~~~~~~~~~- 220 (515)
+.+++++|.+++..- ...+.+.|+...|.++- +.+.+.+.+.|......++..+...+.-+
T Consensus 2 ~~kky~eAidLL~~G--------------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p 67 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG--------------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEP 67 (260)
T ss_dssp HTT-HHHHHHHHHHH--------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-T
T ss_pred ccccHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcc
Confidence 456777777776543 34555666655444433 33333455555555555555544443211
Q ss_pred -------HHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHH
Q 010215 221 -------LARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTI 260 (515)
Q Consensus 221 -------~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 260 (515)
.|.++- .-...-.-++.....+...|.+.|++.+|+..|
T Consensus 68 ~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 68 ERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp THHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred hHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 122211 100111234455556666666666666555444
No 405
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=50.10 E-value=2.1e+02 Score=26.36 Aligned_cols=117 Identities=18% Similarity=0.273 Sum_probs=58.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCH----
Q 010215 303 CPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDT---- 378 (515)
Q Consensus 303 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---- 378 (515)
++|+..+-......+...|--+...-.-.++.. ..--..-..|.+-..+...+++........|.+.++ |+.
T Consensus 219 fPpnkrs~E~Fak~Ft~agL~elvey~~~q~~~---~a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ 294 (412)
T KOG2297|consen 219 FPPNKRSVEHFAKYFTDAGLKELVEYHRNQQSE---GARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNL-PETEVIG 294 (412)
T ss_pred cCCcchhHHHHHHHHhHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCC-CCceEEe
Confidence 366766666666655555432221111111110 001112234455555666677777777656666555 443
Q ss_pred HHHHHHHHHHHhCCCHH-HHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHH
Q 010215 379 STFNTMITMFSHHGHHE-KAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDEC 433 (515)
Q Consensus 379 ~~~~~li~~~~~~g~~~-~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A 433 (515)
..|..++++---+.+-+ -|.+.++. ..+|..|+.+++..|+.+-.
T Consensus 295 ivWs~iMsaveWnKkeelva~qalrh----------lK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 295 IVWSGIMSAVEWNKKEELVAEQALRH----------LKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred eeHhhhhHHHhhchHHHHHHHHHHHH----------HHhhhHHHHHHhcCChHHHH
Confidence 35666666543332111 12222222 24677888888888887753
No 406
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=49.34 E-value=90 Score=27.91 Aligned_cols=19 Identities=32% Similarity=0.627 Sum_probs=8.5
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q 010215 422 KSCFKTGKTDECLSQLLDDM 441 (515)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~~~ 441 (515)
.-|.+.|++++|+ ++++.+
T Consensus 186 ~ey~~~g~~~~A~-~~l~~~ 204 (247)
T PF11817_consen 186 EEYFRLGDYDKAL-KLLEPA 204 (247)
T ss_pred HHHHHCCCHHHHH-HHHHHH
Confidence 3344444444444 444444
No 407
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=49.23 E-value=1.2e+02 Score=25.45 Aligned_cols=21 Identities=5% Similarity=-0.007 Sum_probs=10.5
Q ss_pred HHHHccCChhHHHHHHHHHHh
Q 010215 245 HGWCKINRVDEAQWTIQEMKG 265 (515)
Q Consensus 245 ~~~~~~g~~~~A~~~~~~~~~ 265 (515)
-.|.+.|.+++|.+++++...
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 344455555555555555444
No 408
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=49.15 E-value=1.4e+02 Score=24.07 Aligned_cols=79 Identities=15% Similarity=0.107 Sum_probs=37.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcC------CCCChhhHHHHHHHHHccCC-hhHHHHHHHHHHhCCCCccHhHHHHH
Q 010215 206 MNLLLDTLCKEGKVELARSVFLELKSC------IPPNAHTFNIFIHGWCKINR-VDEAQWTIQEMKGHGCHPCVISYSTI 278 (515)
Q Consensus 206 ~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l 278 (515)
.+.++.-....+++.....+++.+... ...+...|..++.+.++... ---+..+|.-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 355555555555566555555554210 11233445555555544333 22344445555444445555555555
Q ss_pred HHHHHh
Q 010215 279 IQSYCR 284 (515)
Q Consensus 279 i~~~~~ 284 (515)
|.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 554443
No 409
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=48.87 E-value=2.3e+02 Score=26.53 Aligned_cols=27 Identities=15% Similarity=0.407 Sum_probs=15.8
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCCC
Q 010215 387 MFSHHGHHEKAFHVLEEMNKLEHCKPN 413 (515)
Q Consensus 387 ~~~~~g~~~~A~~~~~~m~~~~~~~p~ 413 (515)
...+.|..+.|+.+++-+.+.+-..|.
T Consensus 163 fl~~aG~~E~Ava~~Qa~lE~n~~~P~ 189 (321)
T PF08424_consen 163 FLRQAGYTERAVALWQALLEFNFFRPE 189 (321)
T ss_pred HHHHCCchHHHHHHHHHHHHHHcCCcc
Confidence 344567777777777766665423343
No 410
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=48.77 E-value=99 Score=24.95 Aligned_cols=61 Identities=16% Similarity=0.059 Sum_probs=43.9
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 010215 441 MVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMY 502 (515)
Q Consensus 441 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 502 (515)
+.+..|++++.. -..+++.+...++.-.|.++++++.+.+...+..|....|..+...|-.
T Consensus 11 ~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 11 RLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 334477776653 3356778888877788999999998877677777777777777776643
No 411
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.10 E-value=1.8e+02 Score=24.91 Aligned_cols=88 Identities=8% Similarity=0.050 Sum_probs=51.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHH
Q 010215 315 SYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNC-----LIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFS 389 (515)
Q Consensus 315 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 389 (515)
..+...|++++|...++..... |....+.. |.......|.+++|...++ .....+. .......-.+.+.
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~-t~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLD-TIKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-ccccccH--HHHHHHHhhhHHH
Confidence 4555677777777777766542 22222222 3344566777777777777 4443221 1222333445677
Q ss_pred hCCCHHHHHHHHHHHHhCC
Q 010215 390 HHGHHEKAFHVLEEMNKLE 408 (515)
Q Consensus 390 ~~g~~~~A~~~~~~m~~~~ 408 (515)
..|+-++|..-|.+..+.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 7778888888777777653
No 412
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=47.56 E-value=38 Score=18.13 Aligned_cols=9 Identities=33% Similarity=0.534 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 010215 220 ELARSVFLE 228 (515)
Q Consensus 220 ~~a~~~~~~ 228 (515)
+.+..+|++
T Consensus 4 ~~~r~i~e~ 12 (33)
T smart00386 4 ERARKIYER 12 (33)
T ss_pred HHHHHHHHH
Confidence 334444444
No 413
>PRK10941 hypothetical protein; Provisional
Probab=47.39 E-value=2.2e+02 Score=25.87 Aligned_cols=75 Identities=15% Similarity=0.017 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--CCCChhhHHHHHHHH
Q 010215 172 AKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSC--IPPNAHTFNIFIHGW 247 (515)
Q Consensus 172 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~li~~~ 247 (515)
..+-.+|.+.++++.|+++.+.+.... +.++.-+.--.-.|.+.|.+..|..-++...+. ..|+.......+...
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 344566777778888888777777643 335555655666677777777777777663322 234444444444433
No 414
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=47.22 E-value=94 Score=22.68 Aligned_cols=21 Identities=33% Similarity=0.543 Sum_probs=11.9
Q ss_pred HHHHhCCCHHHHHHHHHHHHh
Q 010215 386 TMFSHHGHHEKAFHVLEEMNK 406 (515)
Q Consensus 386 ~~~~~~g~~~~A~~~~~~m~~ 406 (515)
......|++++|.+.+++.++
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 344455666666666666554
No 415
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=47.05 E-value=4e+02 Score=28.69 Aligned_cols=225 Identities=11% Similarity=0.060 Sum_probs=117.1
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHH-HHHhcCCHHHHHHHHHHHHhc----CCCCCHHHHHHHHH
Q 010215 283 CRQYNFSKVYELLDEMQAQGCPPNV-------VTYTTVMS-YLAKSGDFEEAIRITEKMKIV----GSKPDSRFFNCLIY 350 (515)
Q Consensus 283 ~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~li~-~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li~ 350 (515)
....++++|..++.++...-..|+. ..++.+-. .....|+++.|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3467889999998887654222221 12333322 223468889988888777653 22345566677777
Q ss_pred HHHhcCCHHHHHHHHHhhchhCCCCCCHH---HHHHHHH--HHHhCCCH--HHHHHHHHHHHhCC-CCCC----CHHhHH
Q 010215 351 TLGRASRVQEAVYVYQVEMPENGVAPDTS---TFNTMIT--MFSHHGHH--EKAFHVLEEMNKLE-HCKP----NVQTFH 418 (515)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~li~--~~~~~g~~--~~A~~~~~~m~~~~-~~~p----~~~~~~ 418 (515)
+..-.|++++|..+.. ...+..-.-+.. .|..+.. .+...|+. .+....|......- .-+| -.-+..
T Consensus 506 a~~~~G~~~~Al~~~~-~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQ-QAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHH-HHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 7778899999988876 433321122333 2333322 24455632 22333333332210 0112 223455
Q ss_pred HHHHHHHhcCChHHHHH--HHHHHHHHcCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHH
Q 010215 419 PLLKSCFKTGKTDECLS--QLLDDMVNKHHLSLDITTY--TLVIHGLCRANKCEWAYLLFKEMIGHD----ITPRYQTCR 490 (515)
Q Consensus 419 ~ll~~~~~~g~~~~A~~--~~~~~~~~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~~~~~~ 490 (515)
.++.++.+ .+.+.. ...-+........|-...+ ..|+.+....|+.++|...+.++.... ..++..+-.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 55555555 222221 1111221111212222222 267788888999999999998887532 233333333
Q ss_pred HHHHHH--HhcCCHHHHHHHHHH
Q 010215 491 LILDEV--KQKHMYDAAEKIEAV 511 (515)
Q Consensus 491 ~ll~~~--~~~g~~~~a~~~~~~ 511 (515)
..++.. ...|+.+.+.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 333332 567888877766543
No 416
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=46.68 E-value=98 Score=24.24 Aligned_cols=42 Identities=10% Similarity=0.069 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010215 152 QMRALLEEMSKGHI--VTLNTIAKVMRRFSGAGQWEDAVRTFDE 193 (515)
Q Consensus 152 ~A~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~ 193 (515)
++.++|..|..+++ .....|..-...+...|++++|.++|..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77777777766444 3555555556677777777777777764
No 417
>PHA02875 ankyrin repeat protein; Provisional
Probab=46.33 E-value=2.9e+02 Score=26.88 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=7.3
Q ss_pred HHHHcCCHHHHHHHHH
Q 010215 212 TLCKEGKVELARSVFL 227 (515)
Q Consensus 212 ~~~~~~~~~~a~~~~~ 227 (515)
..+..|+.+.+..+++
T Consensus 74 ~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 74 DAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHCCCHHHHHHHHH
Confidence 3444455554444443
No 418
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=46.29 E-value=2.4e+02 Score=25.99 Aligned_cols=17 Identities=47% Similarity=0.645 Sum_probs=11.1
Q ss_pred CCcCCHHHHHHHHHHhh
Q 010215 95 AIQPSHYLVNKLIHRFK 111 (515)
Q Consensus 95 g~~p~~~~~~~ll~~~~ 111 (515)
.+.|....|+.+|+.+.
T Consensus 106 ~i~~~~qvf~KliRRyk 122 (412)
T KOG2297|consen 106 AIRNSVQVFQKLIRRYK 122 (412)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35566677777777653
No 419
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=45.89 E-value=1.6e+02 Score=23.77 Aligned_cols=44 Identities=14% Similarity=0.223 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 010215 309 TYTTVMSYLAKSGD-FEEAIRITEKMKIVGSKPDSRFFNCLIYTL 352 (515)
Q Consensus 309 ~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 352 (515)
.|..++.+.++... --.+..+|+.+.+.+.+.+..-|..++.++
T Consensus 81 sf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~ 125 (145)
T PF13762_consen 81 SFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAA 125 (145)
T ss_pred hHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34444444433332 222344444444444444444444444443
No 420
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=45.52 E-value=1.1e+02 Score=31.54 Aligned_cols=91 Identities=10% Similarity=-0.065 Sum_probs=37.4
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 010215 272 VISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYT 351 (515)
Q Consensus 272 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 351 (515)
...|..-+..+...++.. ....+.+..+-...+.....-++..|.+.|-.+.+.++.+.+-..-. ...-|..-+..
T Consensus 372 ~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~ 447 (566)
T PF07575_consen 372 HSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSW 447 (566)
T ss_dssp TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred cchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHH
Confidence 334555555554444322 34444444432233445556666677777776767766665544321 12345555566
Q ss_pred HHhcCCHHHHHHHHH
Q 010215 352 LGRASRVQEAVYVYQ 366 (515)
Q Consensus 352 ~~~~g~~~~A~~~~~ 366 (515)
+.++|+......+-+
T Consensus 448 ~~ra~d~~~v~~i~~ 462 (566)
T PF07575_consen 448 FIRAGDYSLVTRIAD 462 (566)
T ss_dssp HH-------------
T ss_pred HHHCCCHHHHHHHHH
Confidence 667777666555554
No 421
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=45.37 E-value=54 Score=31.99 Aligned_cols=102 Identities=13% Similarity=0.111 Sum_probs=55.9
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHH-HHHHHhcCChHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhc
Q 010215 387 MFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPL-LKSCFKTGKTDECLSQLLDDMVNKHHLSLD-ITTYTLVIHGLCRA 464 (515)
Q Consensus 387 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l-l~~~~~~g~~~~A~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~ 464 (515)
-+...+.++.|..++.++++ ..||...|-.. ..++.+.+++..|+......+.. .|+ ...|--=..++.+.
T Consensus 13 ~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~----dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIEL----DPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred hhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhc----CchhhheeeeccHHHHhH
Confidence 34455677777777777777 45654444332 25667777777777444433322 232 11222222333444
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010215 465 NKCEWAYLLFKEMIGHDITPRYQTCRLILDEVK 497 (515)
Q Consensus 465 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 497 (515)
+++.+|...|+.... +.|+..-....+.-|.
T Consensus 86 ~~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKK--LAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHHhhh--cCcCcHHHHHHHHHHH
Confidence 555566666655553 6677766666666553
No 422
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.65 E-value=3.3e+02 Score=27.04 Aligned_cols=91 Identities=11% Similarity=0.164 Sum_probs=59.1
Q ss_pred HHHHHHHHhhhCHHHHHHHHHHhc----cCCCC-CCCHHHHHHHHHHHHcCC-ChHHHHHHHHHHhc--CCCCCH--HHH
Q 010215 102 LVNKLIHRFKDDWKSALGIFRWAG----SCPGY-EHSSEIYEMMVDILGKVR-QMDQMRALLEEMSK--GHIVTL--NTI 171 (515)
Q Consensus 102 ~~~~ll~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~--~~~~~~--~~~ 171 (515)
-...+|-.+.++.+.|..-++.+. ..+.+ +.--.+++.|.+.|.... .+..|..+++...+ .+.|-| +.+
T Consensus 51 qLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckll 130 (629)
T KOG2300|consen 51 QLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLL 130 (629)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHH
Confidence 345566667777777766655442 11222 222356777778887766 78888888887755 455544 345
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 010215 172 AKVMRRFSGAGQWEDAVRTFD 192 (515)
Q Consensus 172 ~~li~~~~~~g~~~~A~~~~~ 192 (515)
..|+..+.-..++..|.+++.
T Consensus 131 fQLaql~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 131 FQLAQLHIIDKDFPSALELLA 151 (629)
T ss_pred HHHHHHHhhhccchhHHHHHh
Confidence 567788888888888888853
No 423
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=44.38 E-value=4.2e+02 Score=28.43 Aligned_cols=95 Identities=8% Similarity=0.067 Sum_probs=56.0
Q ss_pred HHHHHHhhh------CHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcC--------------
Q 010215 104 NKLIHRFKD------DWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKG-------------- 163 (515)
Q Consensus 104 ~~ll~~~~~------~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------- 163 (515)
.++++.|.. ..+...+.+.++....|+..+......+++.. .|++.+|+.++++....
T Consensus 164 ~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A--~GsmRdALsLLdQAia~~~~~It~~~V~~~L 241 (830)
T PRK07003 164 VTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAA--QGSMRDALSLTDQAIAYSANEVTETAVSGML 241 (830)
T ss_pred chhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCcCHHHHHHHh
Confidence 456666652 33445555555544456666777666665543 68888898887765421
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 010215 164 HIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEK 201 (515)
Q Consensus 164 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 201 (515)
+..+...+..++..+ ..++..+++.+++++...|...
T Consensus 242 G~~d~~~i~~ll~aL-~~~d~~~~l~~~~~l~~~g~~~ 278 (830)
T PRK07003 242 GALDQTYMVRLLDAL-AAGDGPEILAVADEMALRSLSF 278 (830)
T ss_pred CCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCH
Confidence 122333344444433 3477777777777777766543
No 424
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=44.13 E-value=84 Score=23.82 Aligned_cols=34 Identities=12% Similarity=0.233 Sum_probs=25.2
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHH
Q 010215 140 MVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAK 173 (515)
Q Consensus 140 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 173 (515)
+++.+.+|...++|+++.+.|.+++-.+...-..
T Consensus 67 ViD~lrRC~T~EEALEVInylek~GEIt~e~A~e 100 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRGEITPEEAKE 100 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 5677778888888888888888877766655433
No 425
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=43.83 E-value=96 Score=20.66 Aligned_cols=49 Identities=12% Similarity=0.032 Sum_probs=30.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-----HhcCCHHHHHHHH
Q 010215 461 LCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEV-----KQKHMYDAAEKIE 509 (515)
Q Consensus 461 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~-----~~~g~~~~a~~~~ 509 (515)
+...|++=+|-++++++=...-.|....+..+|+.. .+.|+...|.+++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 446788888888888875432234555666666643 4567777777654
No 426
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=43.82 E-value=4e+02 Score=27.77 Aligned_cols=407 Identities=12% Similarity=0.124 Sum_probs=201.8
Q ss_pred HHHHHhhhCHHHHHHHHHHhcc---CCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHhcC----CCCCHHHHHHHHH
Q 010215 105 KLIHRFKDDWKSALGIFRWAGS---CPGYEHS-SEIYEMMVDILGKVRQMDQMRALLEEMSKG----HIVTLNTIAKVMR 176 (515)
Q Consensus 105 ~ll~~~~~~~~~a~~~~~~~~~---~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~li~ 176 (515)
.++-....+.+.|...+.++.. ++++..- -.....++..|.+.+... |...+++..+. +...|.-...+++
T Consensus 67 ~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~ 145 (608)
T PF10345_consen 67 SILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLK 145 (608)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 3333344688899998888742 2222111 123345677787777666 88888886542 2235555544443
Q ss_pred H--HHhcCCHHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHhh---cC-------CCCChhh
Q 010215 177 R--FSGAGQWEDAVRTFDELGTFG---LEKNTETMNLLLDTLCK--EGKVELARSVFLELK---SC-------IPPNAHT 239 (515)
Q Consensus 177 ~--~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~---~~-------~~~~~~~ 239 (515)
. +...+++..|++.++.+...- ..|-...+..++.+... .+..+++.+..+++. .+ .+|-..+
T Consensus 146 ~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~ 225 (608)
T PF10345_consen 146 IQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKA 225 (608)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHH
Confidence 2 223479999999998876532 23444555555555443 344556666665531 11 2456677
Q ss_pred HHHHHHHHH--ccCChhHHHHHHHHHHh-------CC----------CC-------------ccHhHH---------HHH
Q 010215 240 FNIFIHGWC--KINRVDEAQWTIQEMKG-------HG----------CH-------------PCVISY---------STI 278 (515)
Q Consensus 240 ~~~li~~~~--~~g~~~~A~~~~~~~~~-------~~----------~~-------------~~~~~~---------~~l 278 (515)
|..+++.++ ..|+++.+...++++.+ .. ++ +....| .-+
T Consensus 226 ~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~ 305 (608)
T PF10345_consen 226 LFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYF 305 (608)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHH
Confidence 877777665 46776677766655532 10 00 111111 112
Q ss_pred HHH--HHhcCChhHHHHHHHH-------HH-HCCCCCC--------HHHHHHHHH---------HHHhcCCHHHHHHHHH
Q 010215 279 IQS--YCRQYNFSKVYELLDE-------MQ-AQGCPPN--------VVTYTTVMS---------YLAKSGDFEEAIRITE 331 (515)
Q Consensus 279 i~~--~~~~g~~~~A~~~~~~-------m~-~~g~~~~--------~~~~~~li~---------~~~~~g~~~~a~~~~~ 331 (515)
+.+ .+..+..++|.+++++ .. .....++ ...|...+. ..+-.+++..|.+..+
T Consensus 306 lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~ 385 (608)
T PF10345_consen 306 LSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELE 385 (608)
T ss_pred HHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 222 2233444455555544 33 1111111 111222222 2234688999999999
Q ss_pred HHHhcCC-CCC-------HHHHHHHHHHHHhcCCHHHHHHHHH-------hhchhCCCCCCHHHHHHH----HHHHHhCC
Q 010215 332 KMKIVGS-KPD-------SRFFNCLIYTLGRASRVQEAVYVYQ-------VEMPENGVAPDTSTFNTM----ITMFSHHG 392 (515)
Q Consensus 332 ~~~~~~~-~~~-------~~~~~~li~~~~~~g~~~~A~~~~~-------~~~~~~~~~~~~~~~~~l----i~~~~~~g 392 (515)
.+.+..- .|+ +.++....-.+-..|+.+.|...|. ......+...+...+..+ |.-+-...
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~ 465 (608)
T PF10345_consen 386 FMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSR 465 (608)
T ss_pred HHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhccc
Confidence 8876421 111 1222222223345799999999995 234444444444433321 11122222
Q ss_pred CHHH--HHHHHHHHHhCCCCCCC--HHh-HHHHHHHHHhcCCh--HHHHHHHHHHHHHcC--CCCCCH---HHHHHHHHH
Q 010215 393 HHEK--AFHVLEEMNKLEHCKPN--VQT-FHPLLKSCFKTGKT--DECLSQLLDDMVNKH--HLSLDI---TTYTLVIHG 460 (515)
Q Consensus 393 ~~~~--A~~~~~~m~~~~~~~p~--~~~-~~~ll~~~~~~g~~--~~A~~~~~~~~~~~~--~~~p~~---~~~~~li~~ 460 (515)
..++ +.++++.+...-.-.|+ ..+ +..++.++...... .++- ..+.+..+.. ....+. .+++.|...
T Consensus 466 ~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k-~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~ 544 (608)
T PF10345_consen 466 DDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAK-RHLQEALKMANNKLGNSQLLAILLNLMGHR 544 (608)
T ss_pred chhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHH-HHHHHHHHHHHHhhccchHHHHHHHHHHHH
Confidence 3333 67777766542112332 223 33334444332222 2333 2222222212 122221 223333333
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC-C--CHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHh
Q 010215 461 LCRANKCEWAYLLFKEMIGHDIT-P--RYQTCRLILD-----EVKQKHMYDAAEKIEAVMKK 514 (515)
Q Consensus 461 ~~~~g~~~~A~~~~~~m~~~~~~-p--~~~~~~~ll~-----~~~~~g~~~~a~~~~~~m~~ 514 (515)
+. .|+..+..+..........+ | ....|..+.. .+...|+.++|..+.....+
T Consensus 545 lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 545 LF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 33 68888766655543321112 2 4456644444 35667999999999887654
No 427
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=43.80 E-value=1.5e+02 Score=30.46 Aligned_cols=75 Identities=11% Similarity=0.188 Sum_probs=49.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHH------HHHHHHHhhcCCCCChhhHHHHH
Q 010215 173 KVMRRFSGAGQWEDAVRTFDELGTFG--LEKNTETMNLLLDTLCKEGKVEL------ARSVFLELKSCIPPNAHTFNIFI 244 (515)
Q Consensus 173 ~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~~~~~~------a~~~~~~~~~~~~~~~~~~~~li 244 (515)
.|+.+|..+|++..+.++++.+.... -+.=...+|..++...+.|.++. +.+.+++. .+.-|..+|..|+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a--~ln~d~~t~all~ 110 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA--RLNGDSLTYALLC 110 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh--hcCCcchHHHHHH
Confidence 56888999999999999888886542 22334567778888888887543 23333332 2456677777777
Q ss_pred HHHHc
Q 010215 245 HGWCK 249 (515)
Q Consensus 245 ~~~~~ 249 (515)
++-..
T Consensus 111 ~~sln 115 (1117)
T COG5108 111 QASLN 115 (1117)
T ss_pred HhhcC
Confidence 66554
No 428
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.49 E-value=4.5e+02 Score=28.29 Aligned_cols=49 Identities=10% Similarity=0.055 Sum_probs=24.6
Q ss_pred HHHHcCCChHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010215 142 DILGKVRQMDQMRALLEEMSKGHIVTL-NTIAKVMRRFSGAGQWEDAVRTFDEL 194 (515)
Q Consensus 142 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m 194 (515)
+.|...|+++.|.+.-+.- |... ..+..-...|.+.+++..|-+++.++
T Consensus 366 k~yLd~g~y~kAL~~ar~~----p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t 415 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTR----PDALETVLLKQADFLFQDKEYLRAAEIYAET 415 (911)
T ss_pred HHHHhcchHHHHHHhccCC----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 4455666666666554321 1111 11222234555666666666666665
No 429
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=42.65 E-value=2.5e+02 Score=25.90 Aligned_cols=52 Identities=13% Similarity=0.196 Sum_probs=27.9
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010215 243 FIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQA 300 (515)
Q Consensus 243 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 300 (515)
++..+.+.++..+....++.+. ....-...+..+...|++..|++++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3344444444445555554443 233334455555667777777777766554
No 430
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=42.41 E-value=5.1e+02 Score=28.61 Aligned_cols=233 Identities=9% Similarity=0.014 Sum_probs=124.2
Q ss_pred CCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 010215 234 PPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTV 313 (515)
Q Consensus 234 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 313 (515)
.++..+-...+..+.+.+..+ +...+..+.+. ++...-...+.++.+.+........+..+.+. +|...-...
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A 704 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPG-FGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAA 704 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchh-HHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHH
Confidence 477777888888888877644 44444455443 34444445555554443222222333333332 465555566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCC
Q 010215 314 MSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGH 393 (515)
Q Consensus 314 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 393 (515)
+.++...+.-+ ...+.. ..+ .+|..+-...+.++.+.+..+.....+ . .++...-...+.++...+.
T Consensus 705 ~~aL~~~~~~~-~~~l~~-~L~---D~d~~VR~~Av~aL~~~~~~~~l~~~l----~----D~~~~VR~~aa~aL~~~~~ 771 (897)
T PRK13800 705 LDVLRALRAGD-AALFAA-ALG---DPDHRVRIEAVRALVSVDDVESVAGAA----T----DENREVRIAVAKGLATLGA 771 (897)
T ss_pred HHHHHhhccCC-HHHHHH-Hhc---CCCHHHHHHHHHHHhcccCcHHHHHHh----c----CCCHHHHHHHHHHHHHhcc
Confidence 66665543211 112222 222 566666666677777665543322222 1 3556666666666666665
Q ss_pred HHH-HHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010215 394 HEK-AFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYL 472 (515)
Q Consensus 394 ~~~-A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 472 (515)
.+. +...+..+.. .+|...-...+.++...|..+.+. ..+..+.+ .++...-...+.++.+.+. +++..
T Consensus 772 ~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~-~~l~~aL~----d~d~~VR~~Aa~aL~~l~~-~~a~~ 841 (897)
T PRK13800 772 GGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDV-AAATAALR----ASAWQVRQGAARALAGAAA-DVAVP 841 (897)
T ss_pred ccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhH-HHHHHHhc----CCChHHHHHHHHHHHhccc-cchHH
Confidence 432 3455555544 356666677777787777765543 33444433 2354445556677777765 45556
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010215 473 LFKEMIGHDITPRYQTCRLILDEVKQK 499 (515)
Q Consensus 473 ~~~~m~~~~~~p~~~~~~~ll~~~~~~ 499 (515)
.+..+.+ .|+..+=...+.++.+.
T Consensus 842 ~L~~~L~---D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 842 ALVEALT---DPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHHHhc---CCCHHHHHHHHHHHhcc
Confidence 6666553 45555555555666554
No 431
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=41.71 E-value=1.7e+02 Score=22.98 Aligned_cols=43 Identities=12% Similarity=0.107 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHH
Q 010215 468 EWAYLLFKEMIGHDITPRYQTCR-LILDEVKQKHMYDAAEKIEA 510 (515)
Q Consensus 468 ~~A~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~ 510 (515)
+++.++|..|.++|+-.....+. .....+-..|++.+|.++++
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44667788888777765554433 33334466788888888876
No 432
>PRK09857 putative transposase; Provisional
Probab=41.47 E-value=2.2e+02 Score=26.23 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=12.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCC
Q 010215 283 CRQYNFSKVYELLDEMQAQGCPPN 306 (515)
Q Consensus 283 ~~~g~~~~A~~~~~~m~~~g~~~~ 306 (515)
.+.|.-++++++..+|...|+.++
T Consensus 251 ~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 251 RQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHH
Confidence 333333445555556655555433
No 433
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.94 E-value=5.3e+02 Score=28.10 Aligned_cols=28 Identities=21% Similarity=0.425 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 010215 274 SYSTIIQSYCRQYNFSKVYELLDEMQAQ 301 (515)
Q Consensus 274 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 301 (515)
-|..|+..|...|+.++|++++.+..+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 3788899999999999999999888763
No 434
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=39.86 E-value=2.6e+02 Score=24.52 Aligned_cols=100 Identities=21% Similarity=0.266 Sum_probs=55.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCC---CHHHH--HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC
Q 010215 338 SKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAP---DTSTF--NTMITMFSHHGHHEKAFHVLEEMNKLEHCKP 412 (515)
Q Consensus 338 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 412 (515)
+.+...-+|.||--|.-...+.+|-..|. .+.|+.| |..++ ..-|......|+.++|++....+...- +.-
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa---~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pei-Ld~ 97 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFA---KESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEI-LDT 97 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhc---cccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHH-Hcc
Confidence 35555666777766666666666666665 2334444 33333 234666778888888888888764322 233
Q ss_pred CHHhHHHHHH----HHHhcCChHHHHHHHHHHHH
Q 010215 413 NVQTFHPLLK----SCFKTGKTDECLSQLLDDMV 442 (515)
Q Consensus 413 ~~~~~~~ll~----~~~~~g~~~~A~~~~~~~~~ 442 (515)
|...+-.+.. -..+.|..++|+ ++.+.=.
T Consensus 98 n~~l~F~Lq~q~lIEliR~~~~eeal-~F~q~~L 130 (228)
T KOG2659|consen 98 NRELFFHLQQLHLIELIREGKTEEAL-EFAQTKL 130 (228)
T ss_pred chhHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHc
Confidence 3323322222 134666677766 5554433
No 435
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=39.64 E-value=3.8e+02 Score=28.31 Aligned_cols=85 Identities=6% Similarity=0.016 Sum_probs=53.2
Q ss_pred HHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcC--------------CCCCHHHHHHHHHHHHh
Q 010215 115 KSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKG--------------HIVTLNTIAKVMRRFSG 180 (515)
Q Consensus 115 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------------~~~~~~~~~~li~~~~~ 180 (515)
+.....+.+.....|+..+......+++.. .|++..|..+++.+... +..+.+.+..++.++..
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~ 258 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN 258 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc
Confidence 333444444444456666666666666544 47777777777664321 12234455555665554
Q ss_pred cCCHHHHHHHHHHHhhCCCCCC
Q 010215 181 AGQWEDAVRTFDELGTFGLEKN 202 (515)
Q Consensus 181 ~g~~~~A~~~~~~m~~~g~~~~ 202 (515)
++...++.+++++...|..+.
T Consensus 259 -~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 259 -QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred -CCHHHHHHHHHHHHHhCCCHH
Confidence 889999999999999887554
No 436
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.62 E-value=2.7e+02 Score=24.66 Aligned_cols=14 Identities=14% Similarity=0.525 Sum_probs=7.9
Q ss_pred cCCHHHHHHHHHHH
Q 010215 181 AGQWEDAVRTFDEL 194 (515)
Q Consensus 181 ~g~~~~A~~~~~~m 194 (515)
.+.+++|.++|.+.
T Consensus 27 ~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 27 SNKYEEAAELYERA 40 (288)
T ss_pred CcchHHHHHHHHHH
Confidence 34566666666543
No 437
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=39.39 E-value=3.9e+02 Score=28.61 Aligned_cols=72 Identities=14% Similarity=0.107 Sum_probs=46.8
Q ss_pred CCCcCCHHHHHHHHHHhhhCHHHHHHHHHHhccCCC--C----------CCCHHHHHHHHHHHHcCCChHHHHHHHHHHh
Q 010215 94 NAIQPSHYLVNKLIHRFKDDWKSALGIFRWAGSCPG--Y----------EHSSEIYEMMVDILGKVRQMDQMRALLEEMS 161 (515)
Q Consensus 94 ~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~--~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 161 (515)
.|+..+...+..+.+.+.++...++.+++++....+ + ..|......+++.+. .|+..+++.+++++.
T Consensus 194 EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~-~~d~~~~l~~~~~l~ 272 (830)
T PRK07003 194 ERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALA-AGDGPEILAVADEMA 272 (830)
T ss_pred cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 477778888888888888888889988776542111 1 123334444555444 377888888888777
Q ss_pred cCCCC
Q 010215 162 KGHIV 166 (515)
Q Consensus 162 ~~~~~ 166 (515)
..+..
T Consensus 273 ~~g~~ 277 (830)
T PRK07003 273 LRSLS 277 (830)
T ss_pred HhCCC
Confidence 65543
No 438
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=39.38 E-value=3.2e+02 Score=25.38 Aligned_cols=110 Identities=18% Similarity=0.108 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhcC--C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010215 150 MDQMRALLEEMSKG--H---IVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARS 224 (515)
Q Consensus 150 ~~~A~~~~~~~~~~--~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~ 224 (515)
.+.|.+.|+....+ . .++.+....++....+.|..+.-..+++.... .++......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Q ss_pred HHHHhhcCCCCChhhHHHHHHHHHccCCh--hHHHHHHHH
Q 010215 225 VFLELKSCIPPNAHTFNIFIHGWCKINRV--DEAQWTIQE 262 (515)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~ 262 (515)
+++.+..+-.........++.++...+.. +.++..+..
T Consensus 223 ~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHH
No 439
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.99 E-value=4.1e+02 Score=27.68 Aligned_cols=95 Identities=14% Similarity=0.137 Sum_probs=59.6
Q ss_pred HHHHHhhh------CHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcC--------------C
Q 010215 105 KLIHRFKD------DWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKG--------------H 164 (515)
Q Consensus 105 ~ll~~~~~------~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------------~ 164 (515)
++++.|.. ..+.....+.+.....|+..+......++.. ..|++..+..++++.... +
T Consensus 170 TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg 247 (618)
T PRK14951 170 TVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLG 247 (618)
T ss_pred HHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHc
Confidence 36666641 2333334444433446777777777777763 358888888888765321 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 010215 165 IVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKN 202 (515)
Q Consensus 165 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 202 (515)
..+.+.+..++.++. .|+...++++++++.+.|..+.
T Consensus 248 ~~~~~~i~~LldaL~-~~d~~~al~~l~~l~~~G~~~~ 284 (618)
T PRK14951 248 SVDRSHVFRLIDALA-QGDGRTVVETADELRLNGLSAA 284 (618)
T ss_pred CCCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 233445555566655 4889999999999999886553
No 440
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=38.88 E-value=3.6e+02 Score=25.83 Aligned_cols=54 Identities=17% Similarity=0.069 Sum_probs=33.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHH
Q 010215 458 IHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEV-KQKHMYDAAEKIEAV 511 (515)
Q Consensus 458 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~ 511 (515)
|..+.+.|-+..|.++.+-+.+.+..-|+.-....|+.| .+.++++-.+++.+.
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~ 164 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSES 164 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHh
Confidence 456667777777777777777544333455555555655 556666666666554
No 441
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=38.87 E-value=1.7e+02 Score=22.15 Aligned_cols=80 Identities=15% Similarity=0.133 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHH
Q 010215 182 GQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQ 261 (515)
Q Consensus 182 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 261 (515)
...++|..+.+.+...+. ....+-.+-+..+.+.|++++| +..-.....||...|-+|. -.+.|--+++...+.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQCHCYPDLEPWAALC--AWKLGLASALESRLT 93 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHH
Confidence 345566666666655432 1122222233345566666666 2222222345555554443 235566666666666
Q ss_pred HHHhCC
Q 010215 262 EMKGHG 267 (515)
Q Consensus 262 ~~~~~~ 267 (515)
++...|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 655544
No 442
>PRK13342 recombination factor protein RarA; Reviewed
Probab=38.64 E-value=3.9e+02 Score=26.16 Aligned_cols=22 Identities=18% Similarity=0.126 Sum_probs=10.8
Q ss_pred CChhHHHHHHHHHHHCCCCCCH
Q 010215 286 YNFSKVYELLDEMQAQGCPPNV 307 (515)
Q Consensus 286 g~~~~A~~~~~~m~~~g~~~~~ 307 (515)
++.+.|+.++..|.+.|..|..
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~ 265 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLF 265 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHH
Confidence 4445555555555555444443
No 443
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=38.23 E-value=3.3e+02 Score=25.22 Aligned_cols=43 Identities=12% Similarity=0.201 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010215 399 HVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVN 443 (515)
Q Consensus 399 ~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 443 (515)
++++.+.+.+ +.|....|.-+.-.+.+.=.+.+.+ .+|+.+..
T Consensus 264 EL~~~L~~~~-i~PqfyaFRWitLLLsQEF~lpDvi-~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKE-IHPQFYAFRWITLLLSQEFPLPDVI-RLWDSLLS 306 (370)
T ss_pred HHHHHHHhcC-CCccchhHHHHHHHHhccCCchhHH-HHHHHHhc
Confidence 3444444444 4555444444444444444444444 45554443
No 444
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=38.21 E-value=2.1e+02 Score=22.87 Aligned_cols=67 Identities=12% Similarity=0.147 Sum_probs=29.1
Q ss_pred CCHHhHHHHHHHHHhcCC---hHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 412 PNVQTFHPLLKSCFKTGK---TDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 412 p~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 479 (515)
++..+--.+.+++.++.+ ..+++ .+++++.+.....-.....--|.-++.+.|+++++.++.+.+.+
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI-~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGI-VILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhH-HHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 444444444444444432 33444 45555543111111122222233455555666666666555554
No 445
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=37.73 E-value=3.9e+02 Score=25.91 Aligned_cols=48 Identities=17% Similarity=0.147 Sum_probs=24.1
Q ss_pred CCChhhHHHHHHHHHc---cCChhHHHHHHHHHHhCCCCccHhHHHHHHHH
Q 010215 234 PPNAHTFNIFIHGWCK---INRVDEAQWTIQEMKGHGCHPCVISYSTIIQS 281 (515)
Q Consensus 234 ~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 281 (515)
..+...+.-+++++.| -.+.+.|+-++-+|.+.|-.|-...-..++-+
T Consensus 243 Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~A 293 (436)
T COG2256 243 DKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIA 293 (436)
T ss_pred CCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3444444445555544 24566666666666666644443333333333
No 446
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.01 E-value=6.5e+02 Score=28.27 Aligned_cols=79 Identities=18% Similarity=0.248 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH----HH
Q 010215 274 SYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPN----VVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSR----FF 345 (515)
Q Consensus 274 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~ 345 (515)
-|...++.+-+.+..+.+.++-....+. ++++ ..+++.+.+-....|.+-+|...+-. .||.. ..
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcL 1057 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCL 1057 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHH
Confidence 3556677777777777777776665553 1222 23455556666666666666544332 34432 34
Q ss_pred HHHHHHHHhcCCHH
Q 010215 346 NCLIYTLGRASRVQ 359 (515)
Q Consensus 346 ~~li~~~~~~g~~~ 359 (515)
..++..++.+|.++
T Consensus 1058 RqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1058 RQLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHHHhccchH
Confidence 55666666776654
No 447
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.50 E-value=4.2e+02 Score=28.57 Aligned_cols=183 Identities=14% Similarity=0.108 Sum_probs=109.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhH
Q 010215 176 RRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDE 255 (515)
Q Consensus 176 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 255 (515)
..-.-+.++++.+.+.+...-.| .++|.-+.+.|-.+-|+...+.-+.. ...+..+|+++.
T Consensus 601 KlALi~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tR-----------F~LaLe~gnle~ 661 (1202)
T KOG0292|consen 601 KLALLNKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTR-----------FELALECGNLEV 661 (1202)
T ss_pred HHHHHhhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchh-----------eeeehhcCCHHH
Confidence 34444667777777665543322 23455556677777666654432211 123557889998
Q ss_pred HHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 256 AQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKI 335 (515)
Q Consensus 256 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 335 (515)
|++.-.++- |..+|..|......+|+.+-|+..|+....- ..+--.|.-.|+.++-.++.+....
T Consensus 662 ale~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~knf---------ekLsfLYliTgn~eKL~Km~~iae~ 726 (1202)
T KOG0292|consen 662 ALEAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKNF---------EKLSFLYLITGNLEKLSKMMKIAEI 726 (1202)
T ss_pred HHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhhh---------hheeEEEEEeCCHHHHHHHHHHHHh
Confidence 887766543 6778999999999999999998888876542 2222334556888877766665543
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010215 336 VGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLE 408 (515)
Q Consensus 336 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 408 (515)
+ .|..... ... .-.|+.++=.+++. . .|..| ..|.. -..+|.-++|.++.++....+
T Consensus 727 r---~D~~~~~-qna--lYl~dv~ervkIl~-n---~g~~~--laylt----a~~~G~~~~ae~l~ee~~~~~ 783 (1202)
T KOG0292|consen 727 R---NDATGQF-QNA--LYLGDVKERVKILE-N---GGQLP--LAYLT----AAAHGLEDQAEKLGEELEKQV 783 (1202)
T ss_pred h---hhhHHHH-HHH--HHhccHHHHHHHHH-h---cCccc--HHHHH----HhhcCcHHHHHHHHHhhcccc
Confidence 2 2222111 111 22578888888876 2 23222 22221 234788888999988887643
No 448
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=36.02 E-value=4.1e+02 Score=25.67 Aligned_cols=18 Identities=11% Similarity=0.078 Sum_probs=9.8
Q ss_pred ccCChhHHHHHHHHHHhC
Q 010215 249 KINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 249 ~~g~~~~A~~~~~~~~~~ 266 (515)
+.+++..|.++|+.+...
T Consensus 143 n~~~y~aA~~~l~~l~~r 160 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR 160 (379)
T ss_pred hcCCHHHHHHHHHHHHHh
Confidence 455555555555555544
No 449
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=35.40 E-value=6.3e+02 Score=27.64 Aligned_cols=47 Identities=13% Similarity=0.093 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhc
Q 010215 309 TYTTVMSYLAKSGDFEEAIRITEKMKI-VGSKPDSRFFNCLIYTLGRA 355 (515)
Q Consensus 309 ~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~ 355 (515)
++..-..-+...|++..+.+++.++.+ .|-.++...+-.++..+...
T Consensus 1233 ~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~L 1280 (1304)
T KOG1114|consen 1233 VWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENL 1280 (1304)
T ss_pred heehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHh
Confidence 333333334444555555555555444 22233333444344443333
No 450
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=35.31 E-value=1.7e+02 Score=22.29 Aligned_cols=41 Identities=15% Similarity=0.012 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010215 456 LVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVK 497 (515)
Q Consensus 456 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 497 (515)
++++-+.++...++|+++++-|.++| ..+...-..|-..+.
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L~ 106 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSILV 106 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 35677788888899999999998877 455554444444433
No 451
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=35.23 E-value=6.6e+02 Score=27.85 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=16.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 010215 172 AKVMRRFSGAGQWEDAVRTFDEL 194 (515)
Q Consensus 172 ~~li~~~~~~g~~~~A~~~~~~m 194 (515)
...++.+...+++.+|..+.++-
T Consensus 698 L~~ir~~Ld~~~Y~~Af~~~Rkh 720 (928)
T PF04762_consen 698 LAGIRKLLDAKDYKEAFELCRKH 720 (928)
T ss_pred HHHHHHHHhhccHHHHHHHHHHh
Confidence 44567777788888887776543
No 452
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=35.19 E-value=4.7e+02 Score=26.46 Aligned_cols=83 Identities=8% Similarity=0.127 Sum_probs=50.6
Q ss_pred HHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhc--C---------------CCCCHHHHHHHHHHHHh
Q 010215 118 LGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSK--G---------------HIVTLNTIAKVMRRFSG 180 (515)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~---------------~~~~~~~~~~li~~~~~ 180 (515)
...+.....+.|...+......++.. ..|++..|...++.+.. . +..+......++.+..
T Consensus 193 ~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~ai~- 269 (507)
T PRK06645 193 FKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVEYII- 269 (507)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-
Confidence 33333333344555666666655553 34677777777766521 0 2234445555555554
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCH
Q 010215 181 AGQWEDAVRTFDELGTFGLEKNT 203 (515)
Q Consensus 181 ~g~~~~A~~~~~~m~~~g~~~~~ 203 (515)
.|+..+|+.+++++...|..|..
T Consensus 270 ~~d~~~Al~~l~~L~~~g~~~~~ 292 (507)
T PRK06645 270 HRETEKAINLINKLYGSSVNLEI 292 (507)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHH
Confidence 59999999999999999876543
No 453
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=35.01 E-value=3.1e+02 Score=24.04 Aligned_cols=100 Identities=14% Similarity=0.220 Sum_probs=58.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC---CHHhH--HHHHHHHHhcCChHHHHHHHHHHHHHcCCCC
Q 010215 374 VAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKP---NVQTF--HPLLKSCFKTGKTDECLSQLLDDMVNKHHLS 448 (515)
Q Consensus 374 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p---~~~~~--~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 448 (515)
+.+...-+|.|+--|.-+..+.+|-+.|..- .| +.| |..++ ..-+......|++++|+ +....+.. .-+.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~-i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Ai-e~in~l~P-eiLd 96 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKE--SG-IKPPSIDLDSMDERLQIRRAIEEGQIEEAI-EKVNQLNP-EILD 96 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccc--cC-CCCccCchhhHhHHHHHHHHHHhccHHHHH-HHHHHhCh-HHHc
Confidence 4556666777777666666666777766653 33 444 33333 34556678889999988 66665533 1223
Q ss_pred CCHHHHHHH----HHHHHhcCCHHHHHHHHHHHH
Q 010215 449 LDITTYTLV----IHGLCRANKCEWAYLLFKEMI 478 (515)
Q Consensus 449 p~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~ 478 (515)
-|...+-.| +--+.+.|..++|+++.+.=.
T Consensus 97 ~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 97 TNRELFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred cchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 332222111 112457788888888877654
No 454
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=34.80 E-value=2.8e+02 Score=25.65 Aligned_cols=22 Identities=14% Similarity=0.099 Sum_probs=14.3
Q ss_pred cccccccCCCCChhhHHHHHHH
Q 010215 52 DHHQVLCVDSPRLPDIDVIISK 73 (515)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~i~~ 73 (515)
.|+.+...-+|+...|.+.++.
T Consensus 46 ~WkllL~Yl~~er~~w~s~La~ 67 (370)
T KOG4567|consen 46 VWKLLLGYLPPERSKWTSFLAK 67 (370)
T ss_pred HHHHHHhhcChhhhhhHHHHHH
Confidence 4555555556777777777653
No 455
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.80 E-value=1.4e+02 Score=21.10 Aligned_cols=32 Identities=13% Similarity=0.241 Sum_probs=24.7
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcCCCCCHHHH
Q 010215 140 MVDILGKVRQMDQMRALLEEMSKGHIVTLNTI 171 (515)
Q Consensus 140 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 171 (515)
+++.+.+|.--++|+++++.+.+++-.+...-
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrGEi~~E~A 68 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRGEITPEMA 68 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCCCCHHHH
Confidence 56777888888888888888888777766544
No 456
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=34.41 E-value=1.8e+02 Score=20.99 Aligned_cols=44 Identities=20% Similarity=0.431 Sum_probs=31.5
Q ss_pred HHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcC
Q 010215 119 GIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKG 163 (515)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 163 (515)
++|+.. ...|+..|+.+|..+++.+.-+=-.+...++++.|..+
T Consensus 29 EL~ELa-~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 29 ELYELA-QLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred HHHHHH-HHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 566655 45677788888888888777766777777777777553
No 457
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.39 E-value=7.1e+02 Score=27.98 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=19.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 455 TLVIHGLCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 455 ~~li~~~~~~g~~~~A~~~~~~m~~ 479 (515)
+.+++.|...+++.+|..++.+.++
T Consensus 1374 aellrllVdy~rl~eA~dLlsEive 1398 (1480)
T KOG4521|consen 1374 AELLRLLVDYERLSEALDLLSEIVE 1398 (1480)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4577888888999999888777664
No 458
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=34.29 E-value=43 Score=22.44 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=17.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCCH
Q 010215 391 HGHHEKAFHVLEEMNKLEHCKPNV 414 (515)
Q Consensus 391 ~g~~~~A~~~~~~m~~~~~~~p~~ 414 (515)
.-+++.|+..|.++...|.++|+.
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhh
Confidence 347888888888888777566654
No 459
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=34.13 E-value=90 Score=17.60 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHhHH
Q 010215 394 HEKAFHVLEEMNKLEHCKPNVQTFH 418 (515)
Q Consensus 394 ~~~A~~~~~~m~~~~~~~p~~~~~~ 418 (515)
++.|..+|++... +.|+..+|.
T Consensus 3 ~dRAR~IyeR~v~---~hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVL---VHPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHH---hCCCchHHH
Confidence 4555666666555 345555543
No 460
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=34.10 E-value=4e+02 Score=24.95 Aligned_cols=133 Identities=11% Similarity=0.059 Sum_probs=76.1
Q ss_pred CCCcCCHHHHHHHHHHhhhCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCC---CHHH
Q 010215 94 NAIQPSHYLVNKLIHRFKDDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIV---TLNT 170 (515)
Q Consensus 94 ~g~~p~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~ 170 (515)
..+..|...++++..+-....++--+..+.+....|-.--...+-.....|++-|+-+.|.+.++..-++.+. -.+.
T Consensus 64 ~~i~~D~~~l~~m~~~neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 64 LVIKLDQDLLNSMKKANEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred cceeccHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 4677888888888887654333333333444333343333456777788999999999999999887654431 1222
Q ss_pred H---HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010215 171 I---AKVMRRFSGAGQWEDAVRTFDELGTFGLEKN----TETMNLLLDTLCKEGKVELARSVFLE 228 (515)
Q Consensus 171 ~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~ 228 (515)
+ ..+.-.|....-+.+-++..+.+.+.|-.-+ ..+|..+- |....++.+|-.+|-+
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld 206 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLD 206 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHH
Confidence 2 2223334444444555555555655553322 22333332 2334567777777766
No 461
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.93 E-value=41 Score=31.25 Aligned_cols=89 Identities=13% Similarity=0.019 Sum_probs=45.9
Q ss_pred cCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccH-hHHHHHHHHHHhcCChhHHHHH
Q 010215 216 EGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCV-ISYSTIIQSYCRQYNFSKVYEL 294 (515)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~ 294 (515)
.|.++.|++.|.......++....|..-.+++.+.+....|++=++.....+ ||. .-|-.--.+....|+|++|...
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHHHHH
Confidence 3445555555555433444555555555555666666666666555555432 332 1222222333345666666666
Q ss_pred HHHHHHCCCCCC
Q 010215 295 LDEMQAQGCPPN 306 (515)
Q Consensus 295 ~~~m~~~g~~~~ 306 (515)
+....+.++.+.
T Consensus 205 l~~a~kld~dE~ 216 (377)
T KOG1308|consen 205 LALACKLDYDEA 216 (377)
T ss_pred HHHHHhccccHH
Confidence 666666655443
No 462
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=33.65 E-value=4.4e+02 Score=25.60 Aligned_cols=58 Identities=7% Similarity=0.099 Sum_probs=34.7
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhC--CCCccH-hHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010215 241 NIFIHGWCKINRVDEAQWTIQEMKGH--GCHPCV-ISYSTIIQSYCRQYNFSKVYELLDEMQ 299 (515)
Q Consensus 241 ~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 299 (515)
--|++...-.|+.....+.++.+.+. |..|.. +| --+.-+|...|++.+|++.|-..+
T Consensus 239 ~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VT-Y~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 239 LGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVT-YQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEe-eehhHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677766666666666543 222322 23 345566777788888888776654
No 463
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=33.52 E-value=2.2e+02 Score=25.36 Aligned_cols=17 Identities=41% Similarity=0.452 Sum_probs=8.6
Q ss_pred hcCCHHHHHHHHHHHHh
Q 010215 319 KSGDFEEAIRITEKMKI 335 (515)
Q Consensus 319 ~~g~~~~a~~~~~~~~~ 335 (515)
+.++.+.+..+.+.+.+
T Consensus 204 ~~~~~~~~~~iv~WL~~ 220 (246)
T PF07678_consen 204 KRGDLEEASPIVRWLIS 220 (246)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHH
Confidence 33555555555555544
No 464
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=33.38 E-value=71 Score=22.25 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=23.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010215 463 RANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQ 498 (515)
Q Consensus 463 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 498 (515)
-.|+.+.+.+++++..+.|..|.......+..+..+
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~ 48 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEE 48 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 447777888888888877777776666555555543
No 465
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=33.34 E-value=3.1e+02 Score=28.36 Aligned_cols=90 Identities=11% Similarity=0.101 Sum_probs=60.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhh---cCCCCChhhHHHHHHHHHccCChh------HHHHHHHHHHhCCCCccHhHHHHH
Q 010215 208 LLLDTLCKEGKVELARSVFLELK---SCIPPNAHTFNIFIHGWCKINRVD------EAQWTIQEMKGHGCHPCVISYSTI 278 (515)
Q Consensus 208 ~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~~~~l 278 (515)
+|+.+|...|++..+.++++... ++.+.-...+|..|+...+.|.++ .|.+.+++..- .-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~l---n~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARL---NGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhc---CCcchHHHHH
Confidence 78999999999999999998843 233444567888888888888764 44555555543 3478888888
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 010215 279 IQSYCRQYNFSKVYELLDEMQA 300 (515)
Q Consensus 279 i~~~~~~g~~~~A~~~~~~m~~ 300 (515)
+.+-..--+-.-.+-++.++..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 8776553333333444444443
No 466
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.26 E-value=5.8e+02 Score=26.86 Aligned_cols=94 Identities=10% Similarity=0.083 Sum_probs=55.5
Q ss_pred HHHHHHhhh------CHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcC--------------
Q 010215 104 NKLIHRFKD------DWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKG-------------- 163 (515)
Q Consensus 104 ~~ll~~~~~------~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------- 163 (515)
.++++.|.. ..+...+.+.++....|+..+......++.. ..|++.+|+.++++....
T Consensus 169 pTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~--A~Gs~RdALsLLdQaia~~~~~It~~~V~~~L 246 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQA--AQGSMRDALSLTDQAIAYSAGNVSEEAVRGML 246 (700)
T ss_pred hHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCcCHHHHHHHh
Confidence 455666642 2333334444333334666666655555433 468888888887763221
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 010215 164 HIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLE 200 (515)
Q Consensus 164 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 200 (515)
+..+...+..++..+. .++...++.+.+.+.+.|..
T Consensus 247 G~~d~~~i~~Ll~aL~-~~d~~~~l~l~~~l~~~G~d 282 (700)
T PRK12323 247 GAIDQSYLVRLLDALA-AEDGAALLAIADEMAGRSLS 282 (700)
T ss_pred CCCCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCC
Confidence 1223445566666555 68889999999998887765
No 467
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.23 E-value=1.5e+02 Score=31.58 Aligned_cols=78 Identities=14% Similarity=0.172 Sum_probs=51.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 010215 137 YEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKE 216 (515)
Q Consensus 137 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 216 (515)
..++|..+.+.|..+-|+...+.-. +- .......|+.+.|++.-..+ -+..+|..|.......
T Consensus 623 GqaiIaYLqKkgypeiAL~FVkD~~--------tR---F~LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~q 685 (1202)
T KOG0292|consen 623 GQAIIAYLQKKGYPEIALHFVKDER--------TR---FELALECGNLEVALEAAKKL------DDKDVWERLGEEALRQ 685 (1202)
T ss_pred cHHHHHHHHhcCCcceeeeeecCcc--------hh---eeeehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHh
Confidence 4566777777777776666554321 11 24455677777777665443 3566788888888888
Q ss_pred CCHHHHHHHHHHhhc
Q 010215 217 GKVELARSVFLELKS 231 (515)
Q Consensus 217 ~~~~~a~~~~~~~~~ 231 (515)
|+.+-|+..|++.+.
T Consensus 686 gn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 686 GNHQIAEMCYQRTKN 700 (1202)
T ss_pred cchHHHHHHHHHhhh
Confidence 888888888877543
No 468
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=33.07 E-value=1.5e+02 Score=19.74 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=6.9
Q ss_pred cCChhHHHHHHHHHH
Q 010215 285 QYNFSKVYELLDEMQ 299 (515)
Q Consensus 285 ~g~~~~A~~~~~~m~ 299 (515)
.|++=+|-++++.+-
T Consensus 12 ~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 12 AGDFFEAHEVLEELW 26 (62)
T ss_dssp TT-HHHHHHHHHHHC
T ss_pred CCCHHHhHHHHHHHH
Confidence 445555555555443
No 469
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=32.34 E-value=2.9e+02 Score=22.93 Aligned_cols=55 Identities=15% Similarity=0.061 Sum_probs=27.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010215 445 HHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKH 500 (515)
Q Consensus 445 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 500 (515)
.|+.++..=. .++..+...++.-.|.++++++.+.+..++..|..-.|..+...|
T Consensus 20 ~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 20 RNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred cCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 4554443222 333444444445556666666665555555555555555555444
No 470
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=32.28 E-value=1.2e+02 Score=23.13 Aligned_cols=38 Identities=8% Similarity=0.020 Sum_probs=16.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010215 463 RANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKH 500 (515)
Q Consensus 463 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 500 (515)
..+..-.|.++++++.+.+..++..|..-.|+.+...|
T Consensus 12 ~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 12 ESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred hCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 33333444444444444443444444444444444433
No 471
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=31.90 E-value=1e+02 Score=20.85 Aligned_cols=32 Identities=9% Similarity=0.016 Sum_probs=16.0
Q ss_pred cHhHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 010215 271 CVISYSTIIQSYCRQYNFSKVYELLDEMQAQG 302 (515)
Q Consensus 271 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 302 (515)
+...++.++..+++..-.++++..+.+..+.|
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33444555555555444555555555555544
No 472
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=31.83 E-value=4.8e+02 Score=25.20 Aligned_cols=54 Identities=17% Similarity=0.072 Sum_probs=30.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHHH--cCCHHHHHHHHHHh
Q 010215 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTE--TMNLLLDTLCK--EGKVELARSVFLEL 229 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~ll~~~~~--~~~~~~a~~~~~~~ 229 (515)
+..+.+.+++..|.++|+.+... ++++.. .+..+..+|.. .-++++|.+.++..
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~ 195 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKL 195 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34455677777777777777765 444443 33334344432 34566677766663
No 473
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=31.83 E-value=3.7e+02 Score=23.87 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=19.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010215 174 VMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTL 213 (515)
Q Consensus 174 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 213 (515)
+++..-+.|+++++.+.+.++...+...+..-.+.+-.+|
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 3455555566666666666665554444544444444443
No 474
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=31.81 E-value=2e+02 Score=20.76 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=23.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010215 293 ELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMK 334 (515)
Q Consensus 293 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 334 (515)
++|+-....|+..|...|..+++.....=..+...++++.|-
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 555555555555555555555555544445555555555553
No 475
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=31.64 E-value=3.3e+02 Score=23.27 Aligned_cols=15 Identities=47% Similarity=0.643 Sum_probs=7.5
Q ss_pred cCCHHHHHHHHHHHH
Q 010215 320 SGDFEEAIRITEKMK 334 (515)
Q Consensus 320 ~g~~~~a~~~~~~~~ 334 (515)
.|+++.|.+.++-|.
T Consensus 134 ~~~~~~Ae~~~~~ME 148 (204)
T COG2178 134 KGSFEEAERFLKFME 148 (204)
T ss_pred hccHHHHHHHHHHHH
Confidence 345555555555443
No 476
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=31.15 E-value=4e+02 Score=24.07 Aligned_cols=27 Identities=19% Similarity=0.132 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010215 340 PDSRFFNCLIYTLGRASRVQEAVYVYQ 366 (515)
Q Consensus 340 ~~~~~~~~li~~~~~~g~~~~A~~~~~ 366 (515)
-|+.....+...|.+.|++.+|+..|-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 455666777777888888888877775
No 477
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=30.65 E-value=2.2e+02 Score=26.90 Aligned_cols=20 Identities=25% Similarity=0.115 Sum_probs=13.2
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 010215 347 CLIYTLGRASRVQEAVYVYQ 366 (515)
Q Consensus 347 ~li~~~~~~g~~~~A~~~~~ 366 (515)
.|++.|.+.|.+++|.++..
T Consensus 111 ~Lm~~ci~~g~y~eALel~~ 130 (338)
T PF04124_consen 111 QLMDTCIRNGNYSEALELSA 130 (338)
T ss_pred HHHHHHHhcccHhhHHHHHH
Confidence 56666666666666666665
No 478
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=30.52 E-value=1.8e+02 Score=26.00 Aligned_cols=52 Identities=19% Similarity=0.235 Sum_probs=24.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHhh----CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010215 175 MRRFSGAGQWEDAVRTFDELGT----FG-LEKNTETMNLLLDTLCKEGKVELARSVF 226 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~----~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 226 (515)
..-|.+.|++++|+++|+.+.. .| ..+...+...+..++...|+.+....+-
T Consensus 185 A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 185 AEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4455555555555555554421 11 1123334444555555556655554443
No 479
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.14 E-value=2e+02 Score=20.33 Aligned_cols=26 Identities=23% Similarity=0.106 Sum_probs=20.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010215 456 LVIHGLCRANKCEWAYLLFKEMIGHD 481 (515)
Q Consensus 456 ~li~~~~~~g~~~~A~~~~~~m~~~~ 481 (515)
++++.+.++.-.++|+++++-|.++|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 45666777788888888888888776
No 480
>PF13934 ELYS: Nuclear pore complex assembly
Probab=29.85 E-value=3.9e+02 Score=23.53 Aligned_cols=116 Identities=9% Similarity=0.134 Sum_probs=57.6
Q ss_pred hcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHH
Q 010215 354 RASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDEC 433 (515)
Q Consensus 354 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A 433 (515)
..+++++|.+.+. .- .+.|+-. ..++.++...|+.+.|+.+++...-. ..+......++.. ...+.+.+|
T Consensus 90 D~~~~~~A~~~L~-~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p~---l~s~~~~~~~~~~-La~~~v~EA 159 (226)
T PF13934_consen 90 DHGDFEEALELLS-HP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVGPP---LSSPEALTLYFVA-LANGLVTEA 159 (226)
T ss_pred ChHhHHHHHHHhC-CC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcCCC---CCCHHHHHHHHHH-HHcCCHHHH
Confidence 4566777777765 22 1222222 23666677778888888877764321 1222223333333 556777777
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 010215 434 LSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQ 487 (515)
Q Consensus 434 ~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 487 (515)
+ .+.+...+ .-....+..++..+..... + ...++++.+..+.++..
T Consensus 160 f-~~~R~~~~----~~~~~l~e~l~~~~~~~~~--~-~~~~~~Ll~LPl~~~EE 205 (226)
T PF13934_consen 160 F-SFQRSYPD----ELRRRLFEQLLEHCLEECA--R-SGRLDELLSLPLDEEEE 205 (226)
T ss_pred H-HHHHhCch----hhhHHHHHHHHHHHHHHhh--h-hhHHHHHHhCCCChHHH
Confidence 6 44433322 1113456666666654432 1 12244555434444433
No 481
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=29.50 E-value=7.4e+02 Score=26.66 Aligned_cols=90 Identities=14% Similarity=0.145 Sum_probs=42.9
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCCC--HHhHHHHHHH-HHhc---CChHHHHH---HHHHHHHHcCCCCCCH---H
Q 010215 385 ITMFSHHGHHEKAFHVLEEMNKLEHCKPN--VQTFHPLLKS-CFKT---GKTDECLS---QLLDDMVNKHHLSLDI---T 452 (515)
Q Consensus 385 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~ll~~-~~~~---g~~~~A~~---~~~~~~~~~~~~~p~~---~ 452 (515)
.+-+...|++++|+.++....+ +| ..+.+.++.- .... +...+... .-+..+...++..+.. .
T Consensus 629 A~~a~~~G~~~~sI~LY~lag~-----yd~al~link~LS~~l~~~~~~~~n~erl~~La~~~~~~y~~~~~~~~~~~~~ 703 (835)
T KOG2168|consen 629 ASEADEDGLFEDAILLYHLAGD-----YDKALELINKLLSQVLHSPTLGQSNKERLGDLALSMNDIYESNKGDSAKVVVK 703 (835)
T ss_pred HHHHHhcCCHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHHHhccCcchhhHHH
Confidence 3345567888888888776633 33 2233333322 1111 11111111 2233333334444443 2
Q ss_pred HHHHHHHH-----HHhcCCHHHHHHHHHHHHh
Q 010215 453 TYTLVIHG-----LCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 453 ~~~~li~~-----~~~~g~~~~A~~~~~~m~~ 479 (515)
|+..|++. ....|++++|+++++.+.-
T Consensus 704 t~~lLl~~~~~f~~y~~~~~e~aL~~le~l~L 735 (835)
T KOG2168|consen 704 TLSLLLDLVSFFDLYHNGEWEEALSILEHLDL 735 (835)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 34433333 2356788888888877753
No 482
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=29.43 E-value=3.3e+02 Score=22.61 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=14.1
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010215 286 YNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAK 319 (515)
Q Consensus 286 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 319 (515)
++.-.|.++++.+.+.+...+..|.-..+..+..
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e 72 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLE 72 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHH
Confidence 3334444444444444433343333333333333
No 483
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=29.39 E-value=2.2e+02 Score=20.59 Aligned_cols=13 Identities=15% Similarity=0.325 Sum_probs=5.0
Q ss_pred CCHHHHHHHHHHH
Q 010215 321 GDFEEAIRITEKM 333 (515)
Q Consensus 321 g~~~~a~~~~~~~ 333 (515)
|+.+.|.+++..+
T Consensus 50 g~~~~ar~LL~~L 62 (88)
T cd08819 50 GNESGARELLKRI 62 (88)
T ss_pred CcHHHHHHHHHHh
Confidence 3333333333333
No 484
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=29.15 E-value=7.2e+02 Score=26.39 Aligned_cols=48 Identities=13% Similarity=0.143 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010215 358 VQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKL 407 (515)
Q Consensus 358 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 407 (515)
.++....+...+...|+..+......++... .|+...++.+++++...
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~ 227 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIAL 227 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHh
Confidence 4455555553455567766776666666543 58888888888877653
No 485
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=29.07 E-value=8e+02 Score=26.92 Aligned_cols=15 Identities=40% Similarity=0.503 Sum_probs=8.5
Q ss_pred HHHHHHHHHhhcCCC
Q 010215 220 ELARSVFLELKSCIP 234 (515)
Q Consensus 220 ~~a~~~~~~~~~~~~ 234 (515)
++++++|..+++..|
T Consensus 1092 e~~~k~~~~l~s~yp 1106 (1304)
T KOG1114|consen 1092 EEAEKIYNYLKSSYP 1106 (1304)
T ss_pred HHHHHHHHHHHHhCc
Confidence 346666666655544
No 486
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=29.03 E-value=4.5e+02 Score=23.96 Aligned_cols=16 Identities=19% Similarity=0.470 Sum_probs=8.1
Q ss_pred ChhHHHHHHHHHHHCC
Q 010215 287 NFSKVYELLDEMQAQG 302 (515)
Q Consensus 287 ~~~~A~~~~~~m~~~g 302 (515)
+..+|..+|....+.|
T Consensus 206 d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 206 DLKKAFRWYKKAAEQG 221 (292)
T ss_pred CHHHHHHHHHHHHHCC
Confidence 3455555555555444
No 487
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=28.89 E-value=2e+02 Score=19.91 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc
Q 010215 218 KVELARSVFLELKSCIPPNAHTFNIFIHGWCK 249 (515)
Q Consensus 218 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 249 (515)
+.+.|..++..++..-..++..||++...+.+
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~R 43 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDR 43 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHH
Confidence 44556666666665555666666666555443
No 488
>PRK09857 putative transposase; Provisional
Probab=28.81 E-value=4.4e+02 Score=24.32 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=14.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 010215 313 VMSYLAKSGDFEEAIRITEKMKIVGSKPD 341 (515)
Q Consensus 313 li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 341 (515)
+..-+.+.|.-+++.++..+|...|+..+
T Consensus 246 iAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 246 IAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 33333334444455666666666665443
No 489
>cd08787 CARD_NOD2_1_CARD15 Caspase activation and recruitment domain of NOD2, repeat 1. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 1. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=28.74 E-value=2.1e+02 Score=20.16 Aligned_cols=57 Identities=14% Similarity=0.249 Sum_probs=42.8
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHhhCC
Q 010215 138 EMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQW--EDAVRTFDELGTFG 198 (515)
Q Consensus 138 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g 198 (515)
+-|+..++..|..+--..+++.+....+.+|.-|. ...-.|++ ..|.++++.....|
T Consensus 6 s~Ll~vL~~~gs~e~~esvLD~LLs~evlswEDYe----~~~~~~~PL~~~aR~LLD~V~~KG 64 (87)
T cd08787 6 SELLEVLCSGGSLEPFESVLDWLLSQEVLSWEDYE----GFHVLGQPLSHNARQLLDTVYNKG 64 (87)
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHhHhhHHHHh----hhhhcCCchHHHHHHHHHHHHhcC
Confidence 45778888889999999999999999999999984 33334443 46777777776655
No 490
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=28.02 E-value=1.1e+02 Score=23.45 Aligned_cols=46 Identities=11% Similarity=0.048 Sum_probs=31.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010215 456 LVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHM 501 (515)
Q Consensus 456 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 501 (515)
.++..+...+..-.|.++++.+.+.+...+..|..--|..+.+.|-
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 4566666666677788888888877777777776666777766664
No 491
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.97 E-value=2.6e+02 Score=20.85 Aligned_cols=44 Identities=25% Similarity=0.282 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010215 151 DQMRALLEEMSKGHI-VTLNTIAKVMRRFSGAGQWEDAVRTFDEL 194 (515)
Q Consensus 151 ~~A~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m 194 (515)
...++-|+++...+. +.+.....|.-.|.+.|+.+.|.+-|+.=
T Consensus 54 ~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetE 98 (121)
T COG4259 54 AALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETE 98 (121)
T ss_pred HHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHh
Confidence 333445555544332 23333333445556666666666666543
No 492
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.96 E-value=45 Score=30.99 Aligned_cols=89 Identities=11% Similarity=-0.028 Sum_probs=36.8
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHH
Q 010215 181 AGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTI 260 (515)
Q Consensus 181 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 260 (515)
.|.++.|++.|...+... ++....|..-.+++.+.+....|++=++....-.+....-|-.--.+-.-.|++++|...|
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 444555555555544432 2333333334444444444444444444322111111122222222222345566666655
Q ss_pred HHHHhCCCCc
Q 010215 261 QEMKGHGCHP 270 (515)
Q Consensus 261 ~~~~~~~~~~ 270 (515)
....+.++.+
T Consensus 206 ~~a~kld~dE 215 (377)
T KOG1308|consen 206 ALACKLDYDE 215 (377)
T ss_pred HHHHhccccH
Confidence 5555554333
No 493
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=27.79 E-value=4.7e+02 Score=23.82 Aligned_cols=17 Identities=6% Similarity=0.331 Sum_probs=10.5
Q ss_pred hcCCHHHHHHHHHHHhh
Q 010215 180 GAGQWEDAVRTFDELGT 196 (515)
Q Consensus 180 ~~g~~~~A~~~~~~m~~ 196 (515)
..+.+..+.+.+.....
T Consensus 53 ~~~~~~~a~~~~~~a~~ 69 (292)
T COG0790 53 YPPDYAKALKSYEKAAE 69 (292)
T ss_pred ccccHHHHHHHHHHhhh
Confidence 45566666666666655
No 494
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=27.66 E-value=1.6e+02 Score=28.98 Aligned_cols=51 Identities=10% Similarity=-0.102 Sum_probs=20.7
Q ss_pred cCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010215 146 KVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGT 196 (515)
Q Consensus 146 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 196 (515)
+.+.++.|..++.++.+.++.+...+..-..++.+.+++..|+.=+....+
T Consensus 16 ~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie 66 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIE 66 (476)
T ss_pred ccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhh
Confidence 334444444444444444433222222222344444444444444444433
No 495
>PRK09462 fur ferric uptake regulator; Provisional
Probab=27.47 E-value=3.3e+02 Score=21.92 Aligned_cols=56 Identities=16% Similarity=0.153 Sum_probs=28.0
Q ss_pred CCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010215 445 HHLSLDITTYTLVIHGLCRA-NKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHM 501 (515)
Q Consensus 445 ~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 501 (515)
.|+.++..= ..++..+... +..-.|.++++++.+.+...+..|..-.|..+...|-
T Consensus 11 ~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 11 AGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred cCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 455444322 2233444433 3455666666666655555555555555555555543
No 496
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=27.28 E-value=5.6e+02 Score=24.51 Aligned_cols=68 Identities=15% Similarity=0.083 Sum_probs=41.5
Q ss_pred HHHHHHhcCCH---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHH
Q 010215 313 VMSYLAKSGDF---EEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFN 382 (515)
Q Consensus 313 li~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 382 (515)
++..+.+.++. -+|.-+++...+.. +.+...--.++..|...|-.+.|...|. .+.-+.+.-|...|.
T Consensus 186 Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s-~~n~~~~LlLvrlY~~LG~~~~A~~~~~-~L~iK~IQ~DTL~h~ 256 (365)
T PF09797_consen 186 LLDLYSKTKDSEYLLQAIALLEHALKKS-PHNYQLKLLLVRLYSLLGAGSLALEHYE-SLDIKNIQLDTLGHL 256 (365)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH-hcChHHHHHHHhHHH
Confidence 34444444443 34555666655543 5555666667788888888888888887 665555554544443
No 497
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=26.70 E-value=5.1e+02 Score=23.89 Aligned_cols=168 Identities=12% Similarity=0.063 Sum_probs=86.2
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHh--cC-----CHHHHHHHHHHHHhcCCC-CC-
Q 010215 272 VISYSTIIQSYCRQYNFSKVYELLDEM-QAQGCPPNVVTYTTVMSYLAK--SG-----DFEEAIRITEKMKIVGSK-PD- 341 (515)
Q Consensus 272 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~g~~~~~~~~~~li~~~~~--~g-----~~~~a~~~~~~~~~~~~~-~~- 341 (515)
...+.-+++.+...|+++.--..+..+ .++|.. ..+...+|.-... .| -..-..++++...+..+- .+
T Consensus 52 ~kvl~~i~dLl~S~~~~~~Lneql~~L~kKhGQl--k~sI~~MIq~vmEylKg~~dl~t~i~~ietlr~VtEgkIFvEvE 129 (439)
T COG5071 52 TKVLIYIADLLFSAGDFQGLNEQLVSLFKKHGQL--KQSITSMIQHVMEYLKGIDDLKTKINLIETLRTVTEGKIFVEVE 129 (439)
T ss_pred HHHHHHHHHHHhhcCchhhhhhHHHHHHHHcchH--HHHHHHHHHHHHHhccCcccccchHhHHHHHHHHhcCceEEehh
Confidence 445666777788888887544444433 344432 2333334432221 11 122233444444433221 12
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHhhchh--CCCCCCHHHHH---HHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHH
Q 010215 342 -SRFFNCLIYTLGRASRVQEAVYVYQVEMPE--NGVAPDTSTFN---TMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQ 415 (515)
Q Consensus 342 -~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 415 (515)
...-.-|...+-.+|+.+.|..++- ..+- .|.-.-....+ --+..+...+++-.|--+-+++.+.---.||..
T Consensus 130 RariT~~L~~ikee~Gdi~sA~Dilc-n~pVETygs~~~Sekv~fiLEQ~rL~vl~~Dy~~A~~~~kKI~KK~Fe~~d~~ 208 (439)
T COG5071 130 RARLTQLLSQIKEEQGDIKSAQDILC-NEPVETYGSFDLSEKVAFILEQVRLFLLRSDYYMASTYTKKINKKFFEKEDVQ 208 (439)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHh-cCchhhccchhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhccccHH
Confidence 2233456677888999999999887 3321 11100011111 124567778999999888887776542345544
Q ss_pred h-----HHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010215 416 T-----FHPLLKSCFKTGKTDECLSQLLDDMVN 443 (515)
Q Consensus 416 ~-----~~~ll~~~~~~g~~~~A~~~~~~~~~~ 443 (515)
. |..++..-.+...+-++. ++++....
T Consensus 209 slKlkyYeL~V~i~Lh~R~Yl~v~-~y~~~vY~ 240 (439)
T COG5071 209 SLKLKYYELKVRIGLHDRAYLDVC-KYYRAVYD 240 (439)
T ss_pred HHHHHHHHHhheeecccHHHHHHH-HHHHHHHH
Confidence 3 444444444444444544 55555544
No 498
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.69 E-value=6.9e+02 Score=25.37 Aligned_cols=80 Identities=9% Similarity=0.033 Sum_probs=43.3
Q ss_pred HHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcC--CCCC------------HHHHHHHHHHHHhcCCH
Q 010215 119 GIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKG--HIVT------------LNTIAKVMRRFSGAGQW 184 (515)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~------------~~~~~~li~~~~~~g~~ 184 (515)
..+.+.....|...+......+++.. .|++..|..++++.... +.++ .+....++.+.. .|+.
T Consensus 185 ~~l~~il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~-~~d~ 261 (509)
T PRK14958 185 AHCQHLLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA-AKAG 261 (509)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-cCCH
Confidence 33333334456777777776666553 58888888888765321 1122 222222333322 3556
Q ss_pred HHHHHHHHHHhhCCCCC
Q 010215 185 EDAVRTFDELGTFGLEK 201 (515)
Q Consensus 185 ~~A~~~~~~m~~~g~~~ 201 (515)
+.++.+++++...|..|
T Consensus 262 ~~~l~~~~~l~~~g~~~ 278 (509)
T PRK14958 262 DRLLGCVTRLVEQGVDF 278 (509)
T ss_pred HHHHHHHHHHHHcCCCH
Confidence 66666666666665444
No 499
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=25.70 E-value=4e+02 Score=23.25 Aligned_cols=62 Identities=10% Similarity=0.073 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 010215 150 MDQMRALLEEMSK------GHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLD 211 (515)
Q Consensus 150 ~~~A~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 211 (515)
+..|.+.|++.-+ .+......+..+.....+.|+.++|.++|.++...+-......+..+.+
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
No 500
>PHA03100 ankyrin repeat protein; Provisional
Probab=25.55 E-value=6.7e+02 Score=24.88 Aligned_cols=209 Identities=11% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCCCCHHHHHH--HHHH-----HHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHH
Q 010215 188 VRTFDELGTFGLEKNTETMNL--LLDT-----LCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTI 260 (515)
Q Consensus 188 ~~~~~~m~~~g~~~~~~~~~~--ll~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 260 (515)
.++++.+.+.|..|+...... .+.. .+..|+.+-+.-+.+.-..-...+....+.|..+.. ....-.+++
T Consensus 48 ~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~---~~~~~~~iv 124 (480)
T PHA03100 48 IDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAIS---KKSNSYSIV 124 (480)
T ss_pred HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHh---cccChHHHH
Q ss_pred HHHHhCCCCccHhHHH--HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010215 261 QEMKGHGCHPCVISYS--TIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTY--TTVMSYLAKSGDFEEAIRITEKMKIV 336 (515)
Q Consensus 261 ~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~ 336 (515)
+.+.+.|..++..... +.+...+..|. .-.++.+.+.+.|..++.... .+.+..++..| -.++.+.+.+.
T Consensus 125 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~----~~~iv~~Ll~~ 198 (480)
T PHA03100 125 EYLLDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKG----NIDVIKFLLDN 198 (480)
T ss_pred HHHHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhC----CHHHHHHHHHc
Q ss_pred CCCCCHHHH--------HHHHHHHHhcCC--HHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010215 337 GSKPDSRFF--------NCLIYTLGRASR--VQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNK 406 (515)
Q Consensus 337 ~~~~~~~~~--------~~li~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 406 (515)
|..++.... ...+...+..|+ .+-...+++ .-..-... |..-.+.+..+..... .++++.+.+
T Consensus 199 ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~-~g~din~~-d~~g~TpL~~A~~~~~-----~~iv~~Ll~ 271 (480)
T PHA03100 199 GADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLS-YGVPINIK-DVYGFTPLHYAVYNNN-----PEFVKYLLD 271 (480)
T ss_pred CCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHH-cCCCCCCC-CCCCCCHHHHHHHcCC-----HHHHHHHHH
Q ss_pred CCCCCCC
Q 010215 407 LEHCKPN 413 (515)
Q Consensus 407 ~~~~~p~ 413 (515)
.| ..|+
T Consensus 272 ~g-ad~n 277 (480)
T PHA03100 272 LG-ANPN 277 (480)
T ss_pred cC-CCCC
Done!