Query 010215
Match_columns 515
No_of_seqs 737 out of 3296
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 22:24:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010215.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010215hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 8.8E-39 3E-43 327.3 42.1 455 40-514 59-578 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.3E-35 1.1E-39 300.8 38.1 403 97-514 81-544 (597)
3 4g26_A Pentatricopeptide repea 100.0 6.8E-31 2.3E-35 258.4 24.3 187 238-426 27-222 (501)
4 4g26_A Pentatricopeptide repea 100.0 1.4E-30 4.7E-35 256.2 24.6 207 254-464 7-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 1.4E-27 4.7E-32 230.7 44.5 374 112-500 13-387 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 4.9E-27 1.7E-31 226.7 44.6 364 140-515 5-368 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 3.2E-23 1.1E-27 204.2 39.2 362 131-507 23-446 (450)
8 2gw1_A Mitochondrial precursor 99.9 1.9E-23 6.4E-28 209.4 36.7 388 112-512 20-475 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 1.3E-22 4.4E-27 199.8 37.5 329 151-493 9-370 (450)
10 2gw1_A Mitochondrial precursor 99.9 3.7E-22 1.3E-26 199.9 35.8 397 73-488 16-484 (514)
11 3fp2_A TPR repeat-containing p 99.9 2.1E-21 7.2E-26 195.6 38.3 385 112-514 39-490 (537)
12 3ieg_A DNAJ homolog subfamily 99.9 1.1E-19 3.8E-24 172.7 38.6 329 133-497 2-351 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 9.8E-19 3.3E-23 166.2 40.3 314 169-515 4-335 (359)
14 3fp2_A TPR repeat-containing p 99.9 2.1E-19 7.3E-24 180.9 35.5 386 74-480 36-491 (537)
15 3hym_B Cell division cycle pro 99.9 4.4E-19 1.5E-23 166.6 29.8 288 130-424 18-314 (330)
16 3hym_B Cell division cycle pro 99.8 2.5E-18 8.5E-23 161.4 31.7 293 201-503 20-322 (330)
17 2xm6_A Protein corresponding t 99.8 1.9E-15 6.5E-20 150.1 51.6 337 112-481 57-433 (490)
18 1fch_A Peroxisomal targeting s 99.8 7.3E-19 2.5E-23 168.0 23.9 288 181-475 38-354 (368)
19 4eqf_A PEX5-related protein; a 99.8 1E-18 3.6E-23 166.8 22.3 267 236-510 64-351 (365)
20 2xm6_A Protein corresponding t 99.8 3.4E-15 1.2E-19 148.3 47.1 350 133-514 38-431 (490)
21 1fch_A Peroxisomal targeting s 99.8 4.7E-18 1.6E-22 162.3 25.5 278 135-439 65-354 (368)
22 2ooe_A Cleavage stimulation fa 99.8 1.2E-15 4E-20 153.3 42.0 403 99-514 12-491 (530)
23 3cv0_A Peroxisome targeting si 99.8 1.8E-17 6E-22 155.4 26.3 265 134-403 21-311 (327)
24 4eqf_A PEX5-related protein; a 99.8 6.1E-18 2.1E-22 161.5 21.9 230 134-366 65-305 (365)
25 1b89_A Protein (clathrin heavy 99.8 5.4E-18 1.9E-22 159.2 17.6 347 113-513 18-370 (449)
26 3mkr_A Coatomer subunit epsilo 99.8 2.6E-16 8.8E-21 144.5 28.6 251 176-443 7-263 (291)
27 3cv0_A Peroxisome targeting si 99.8 2E-16 7E-21 148.1 26.6 274 174-477 27-312 (327)
28 4g1t_A Interferon-induced prot 99.8 5.4E-15 1.9E-19 146.2 37.8 362 131-514 48-458 (472)
29 1b89_A Protein (clathrin heavy 99.8 9E-17 3.1E-21 150.9 23.2 328 100-477 32-369 (449)
30 3spa_A Mtrpol, DNA-directed RN 99.8 2E-18 6.8E-23 174.7 10.4 117 237-353 127-247 (1134)
31 2ooe_A Cleavage stimulation fa 99.7 7.5E-14 2.6E-18 140.1 43.2 404 61-479 10-491 (530)
32 1xi4_A Clathrin heavy chain; a 99.7 1.5E-13 5.1E-18 143.9 45.5 338 111-509 998-1339(1630)
33 3mkr_A Coatomer subunit epsilo 99.7 2.3E-15 7.8E-20 138.2 28.4 276 210-508 6-287 (291)
34 1xi4_A Clathrin heavy chain; a 99.7 1.2E-13 4.2E-18 144.5 43.0 353 98-513 951-1307(1630)
35 3spa_A Mtrpol, DNA-directed RN 99.7 8E-18 2.8E-22 170.4 10.3 138 339-485 124-265 (1134)
36 4g1t_A Interferon-induced prot 99.7 4.4E-14 1.5E-18 139.6 32.5 361 109-489 62-469 (472)
37 2pl2_A Hypothetical conserved 99.7 3E-15 1E-19 131.2 20.7 198 131-332 2-210 (217)
38 3uq3_A Heat shock protein STI1 99.7 2.8E-14 9.7E-19 128.4 23.9 220 172-406 9-235 (258)
39 3uq3_A Heat shock protein STI1 99.7 4.2E-14 1.4E-18 127.3 24.3 224 238-479 6-235 (258)
40 2pl2_A Hypothetical conserved 99.6 2.1E-14 7.2E-19 125.8 21.5 195 167-366 4-209 (217)
41 3u4t_A TPR repeat-containing p 99.6 1.4E-13 4.7E-18 125.2 27.5 247 237-492 3-261 (272)
42 2ho1_A Type 4 fimbrial biogene 99.6 1.4E-13 4.7E-18 123.7 26.5 201 134-337 37-239 (252)
43 2vq2_A PILW, putative fimbrial 99.6 1.4E-13 4.8E-18 121.0 25.7 201 133-335 7-210 (225)
44 2q7f_A YRRB protein; TPR, prot 99.6 2.8E-14 9.7E-19 127.3 20.6 213 131-347 20-232 (243)
45 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.7E-14 1.3E-18 129.1 19.6 243 181-434 18-266 (275)
46 3u4t_A TPR repeat-containing p 99.6 1.4E-13 4.8E-18 125.1 23.2 199 135-335 4-207 (272)
47 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.2E-14 4.1E-19 132.4 15.7 246 146-401 17-269 (275)
48 1ouv_A Conserved hypothetical 99.6 3E-12 1E-16 116.5 31.6 222 169-408 7-252 (273)
49 2vq2_A PILW, putative fimbrial 99.6 3.9E-13 1.3E-17 118.1 24.9 198 206-406 11-210 (225)
50 2ho1_A Type 4 fimbrial biogene 99.6 7.7E-13 2.6E-17 118.7 27.2 208 272-489 37-245 (252)
51 2h6f_A Protein farnesyltransfe 99.6 3.5E-13 1.2E-17 127.9 25.4 231 133-369 96-344 (382)
52 1ouv_A Conserved hypothetical 99.6 3.5E-12 1.2E-16 116.0 31.3 223 236-480 5-251 (273)
53 2h6f_A Protein farnesyltransfe 99.6 5.2E-13 1.8E-17 126.7 25.7 234 167-407 96-348 (382)
54 2q7f_A YRRB protein; TPR, prot 99.6 2.9E-13 1E-17 120.7 19.9 196 206-406 26-221 (243)
55 3e4b_A ALGK; tetratricopeptide 99.6 7.4E-13 2.5E-17 129.5 23.9 370 111-511 16-417 (452)
56 3e4b_A ALGK; tetratricopeptide 99.6 6.4E-13 2.2E-17 130.0 23.4 331 115-479 55-420 (452)
57 4a1s_A PINS, partner of inscut 99.5 2.2E-13 7.5E-18 131.9 19.6 278 168-479 48-371 (411)
58 4a1s_A PINS, partner of inscut 99.5 2.4E-13 8E-18 131.7 19.4 271 135-406 49-371 (411)
59 3sf4_A G-protein-signaling mod 99.5 2.4E-13 8.2E-18 131.2 19.2 274 132-406 7-335 (406)
60 3sf4_A G-protein-signaling mod 99.5 6.8E-13 2.3E-17 128.0 22.1 305 167-502 8-363 (406)
61 3vtx_A MAMA; tetratricopeptide 99.5 1.6E-12 5.3E-17 110.6 21.0 167 133-301 4-170 (184)
62 3ro2_A PINS homolog, G-protein 99.5 3.9E-13 1.3E-17 125.9 18.8 163 137-299 8-210 (338)
63 3ro2_A PINS homolog, G-protein 99.5 6E-13 2E-17 124.6 19.2 134 344-479 185-331 (338)
64 2ond_A Cleavage stimulation fa 99.5 4.8E-11 1.7E-15 110.5 27.7 183 220-407 81-270 (308)
65 3ulq_A Response regulator aspa 99.5 1.4E-11 4.7E-16 118.1 24.0 231 278-513 109-366 (383)
66 4abn_A Tetratricopeptide repea 99.5 3.5E-12 1.2E-16 125.5 19.7 211 114-330 84-315 (474)
67 4abn_A Tetratricopeptide repea 99.4 8.3E-12 2.8E-16 122.9 21.8 214 149-366 83-316 (474)
68 2ond_A Cleavage stimulation fa 99.4 5.1E-11 1.8E-15 110.3 26.0 216 116-336 34-270 (308)
69 4e6h_A MRNA 3'-END-processing 99.4 2.3E-09 7.9E-14 108.6 39.1 407 97-514 63-569 (679)
70 3vtx_A MAMA; tetratricopeptide 99.4 2.9E-11 1E-15 102.6 21.7 167 167-336 4-170 (184)
71 3ulq_A Response regulator aspa 99.4 2.8E-11 9.6E-16 115.9 22.8 228 174-405 109-366 (383)
72 3as5_A MAMA; tetratricopeptide 99.4 3.9E-11 1.3E-15 101.6 19.7 164 135-300 9-172 (186)
73 3nf1_A KLC 1, kinesin light ch 99.4 8.3E-12 2.8E-16 115.6 16.3 234 132-366 25-302 (311)
74 3q15_A PSP28, response regulat 99.4 1.2E-10 4.2E-15 111.2 23.7 229 279-513 108-363 (378)
75 3nf1_A KLC 1, kinesin light ch 99.4 2E-11 6.9E-16 113.0 17.3 241 270-514 25-306 (311)
76 4gyw_A UDP-N-acetylglucosamine 99.3 3.6E-11 1.2E-15 123.2 19.5 168 131-300 6-173 (723)
77 1hz4_A MALT regulatory protein 99.3 1.4E-09 4.9E-14 103.5 28.9 266 176-443 22-321 (373)
78 3as5_A MAMA; tetratricopeptide 99.3 2.2E-10 7.7E-15 96.8 20.1 162 171-335 11-172 (186)
79 1hz4_A MALT regulatory protein 99.3 1.9E-09 6.5E-14 102.7 28.6 293 207-502 18-352 (373)
80 3q15_A PSP28, response regulat 99.3 3.1E-10 1.1E-14 108.4 22.8 31 132-162 8-40 (378)
81 4i17_A Hypothetical protein; T 99.3 6.1E-10 2.1E-14 98.0 21.0 205 132-348 5-220 (228)
82 4e6h_A MRNA 3'-END-processing 99.3 2.6E-07 8.8E-12 93.7 41.6 422 61-496 63-584 (679)
83 4gyw_A UDP-N-acetylglucosamine 99.3 2.2E-10 7.4E-15 117.5 19.1 168 165-335 6-173 (723)
84 4i17_A Hypothetical protein; T 99.2 2.2E-09 7.5E-14 94.4 21.8 194 166-371 5-208 (228)
85 3edt_B KLC 2, kinesin light ch 99.2 1.6E-10 5.3E-15 105.2 14.3 219 147-366 14-276 (283)
86 1qqe_A Vesicular transport pro 99.2 1.2E-09 4.2E-14 100.1 18.8 243 221-492 3-277 (292)
87 3edt_B KLC 2, kinesin light ch 99.2 6.4E-10 2.2E-14 101.1 16.4 228 283-514 12-280 (283)
88 3qky_A Outer membrane assembly 99.2 2.7E-09 9.2E-14 96.1 19.1 188 131-336 12-224 (261)
89 1qqe_A Vesicular transport pro 99.1 4.8E-09 1.6E-13 96.1 21.0 231 186-441 3-266 (292)
90 2fo7_A Synthetic consensus TPR 99.1 3.2E-09 1.1E-13 84.3 16.0 124 175-300 8-131 (136)
91 3urz_A Uncharacterized protein 99.1 4.1E-09 1.4E-13 91.2 16.8 177 137-335 7-185 (208)
92 3mv2_B Coatomer subunit epsilo 99.1 6.7E-08 2.3E-12 87.0 24.9 79 256-335 85-164 (310)
93 2fo7_A Synthetic consensus TPR 99.1 8.1E-09 2.8E-13 81.9 16.7 129 136-265 3-131 (136)
94 3mv2_B Coatomer subunit epsilo 99.0 2.4E-08 8.3E-13 89.9 20.1 243 146-414 25-286 (310)
95 2pzi_A Probable serine/threoni 99.0 2.6E-09 9E-14 109.9 15.5 202 160-370 386-603 (681)
96 3urz_A Uncharacterized protein 99.0 1.7E-08 6E-13 87.2 18.4 132 278-417 60-193 (208)
97 3qky_A Outer membrane assembly 99.0 1.9E-08 6.4E-13 90.5 18.9 211 164-398 11-252 (261)
98 4ga2_A E3 SUMO-protein ligase 99.0 1.6E-09 5.6E-14 88.2 10.2 144 141-286 4-148 (150)
99 2r5s_A Uncharacterized protein 99.0 5.2E-09 1.8E-13 87.9 13.7 161 137-299 9-171 (176)
100 2yhc_A BAMD, UPF0169 lipoprote 99.0 3.3E-08 1.1E-12 86.7 18.8 187 133-337 3-214 (225)
101 3qou_A Protein YBBN; thioredox 99.0 1.1E-08 3.9E-13 93.3 15.7 167 131-299 114-282 (287)
102 2pzi_A Probable serine/threoni 99.0 7.1E-09 2.4E-13 106.7 15.8 185 214-405 402-603 (681)
103 3dra_A Protein farnesyltransfe 98.9 5.5E-07 1.9E-11 81.9 25.3 225 149-406 48-286 (306)
104 2r5s_A Uncharacterized protein 98.9 1.2E-08 4.1E-13 85.6 13.1 161 171-334 9-171 (176)
105 2vsy_A XCC0866; transferase, g 98.9 2.4E-08 8.2E-13 100.8 17.3 163 112-278 3-168 (568)
106 3qou_A Protein YBBN; thioredox 98.9 6.8E-08 2.3E-12 88.1 18.5 167 305-478 115-282 (287)
107 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.8E-07 6.2E-12 81.9 20.3 185 167-373 3-214 (225)
108 3dra_A Protein farnesyltransfe 98.9 9.8E-07 3.3E-11 80.3 25.5 233 185-458 50-300 (306)
109 4ga2_A E3 SUMO-protein ligase 98.9 9.5E-09 3.2E-13 83.6 10.1 111 178-291 7-118 (150)
110 3rjv_A Putative SEL1 repeat pr 98.9 3.2E-07 1.1E-11 79.4 20.1 161 169-337 19-198 (212)
111 2ifu_A Gamma-SNAP; membrane fu 98.9 3.3E-08 1.1E-12 91.2 14.5 97 380-478 118-222 (307)
112 2vsy_A XCC0866; transferase, g 98.9 6.1E-08 2.1E-12 97.9 17.4 154 147-302 2-158 (568)
113 3rjv_A Putative SEL1 repeat pr 98.9 5.1E-07 1.7E-11 78.1 20.9 173 291-481 5-198 (212)
114 2ifu_A Gamma-SNAP; membrane fu 98.8 4.7E-08 1.6E-12 90.2 15.0 154 212-366 45-219 (307)
115 2uy1_A Cleavage stimulation fa 98.8 1.6E-05 5.6E-10 78.0 33.5 372 99-513 14-411 (493)
116 2qfc_A PLCR protein; TPR, HTH, 98.8 9.9E-07 3.4E-11 80.6 22.8 163 136-298 77-263 (293)
117 3u3w_A Transcriptional activat 98.8 8.1E-07 2.8E-11 81.2 20.4 195 96-298 42-263 (293)
118 4gco_A Protein STI-1; structur 98.8 2.6E-07 9E-12 72.4 14.2 111 134-245 13-123 (126)
119 1a17_A Serine/threonine protei 98.7 3.5E-07 1.2E-11 75.4 15.2 126 136-262 15-142 (166)
120 2uy1_A Cleavage stimulation fa 98.7 2.4E-05 8.2E-10 76.8 30.4 365 66-479 17-412 (493)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.7 8.7E-07 3E-11 76.6 18.0 123 175-301 13-150 (213)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.3E-06 4.6E-11 75.4 18.9 128 136-267 8-151 (213)
123 4f3v_A ESX-1 secretion system 98.7 8.1E-07 2.8E-11 78.9 17.3 197 146-348 18-247 (282)
124 1na0_A Designed protein CTPR3; 98.7 5.4E-07 1.9E-11 70.0 14.7 113 134-247 9-121 (125)
125 3u3w_A Transcriptional activat 98.7 1.3E-06 4.3E-11 79.9 19.2 162 244-405 82-264 (293)
126 3q7a_A Farnesyltransferase alp 98.7 1.2E-05 4E-10 74.0 25.3 171 147-320 67-255 (349)
127 2qfc_A PLCR protein; TPR, HTH, 98.7 9.4E-07 3.2E-11 80.8 18.3 169 308-478 76-264 (293)
128 2lni_A Stress-induced-phosphop 98.7 4E-07 1.4E-11 71.8 13.9 120 131-251 13-132 (133)
129 2vyi_A SGTA protein; chaperone 98.7 3.6E-07 1.2E-11 71.7 13.2 119 133-252 11-129 (131)
130 2c2l_A CHIP, carboxy terminus 98.7 2.6E-07 9.1E-12 83.8 13.5 94 134-228 4-97 (281)
131 1a17_A Serine/threonine protei 98.7 9.3E-07 3.2E-11 72.8 15.5 126 171-298 16-143 (166)
132 3q7a_A Farnesyltransferase alp 98.6 5.7E-05 1.9E-09 69.4 28.1 222 179-405 65-329 (349)
133 3gyz_A Chaperone protein IPGC; 98.6 6.4E-08 2.2E-12 78.4 7.4 103 163-266 31-133 (151)
134 4gco_A Protein STI-1; structur 98.6 5.9E-07 2E-11 70.4 12.4 96 170-266 15-110 (126)
135 2e2e_A Formate-dependent nitri 98.6 2E-07 7E-12 78.0 10.1 121 145-266 21-144 (177)
136 2c2l_A CHIP, carboxy terminus 98.6 4.3E-07 1.5E-11 82.4 12.9 97 168-265 4-100 (281)
137 2vgx_A Chaperone SYCD; alterna 98.6 2.2E-07 7.5E-12 75.2 9.6 106 159-265 12-117 (148)
138 3gw4_A Uncharacterized protein 98.6 7.4E-07 2.5E-11 76.2 13.4 131 204-334 27-174 (203)
139 1na0_A Designed protein CTPR3; 98.6 2.1E-06 7.2E-11 66.5 14.8 95 205-300 11-105 (125)
140 2lni_A Stress-induced-phosphop 98.5 1.5E-06 5.2E-11 68.4 13.4 98 167-265 15-112 (133)
141 1p5q_A FKBP52, FK506-binding p 98.5 8E-08 2.7E-12 89.7 6.7 142 149-291 128-283 (336)
142 4f3v_A ESX-1 secretion system 98.5 9.4E-06 3.2E-10 72.1 19.5 137 345-490 105-245 (282)
143 2vyi_A SGTA protein; chaperone 98.5 2.6E-06 8.7E-11 66.7 14.5 116 170-287 14-129 (131)
144 1elw_A TPR1-domain of HOP; HOP 98.5 3.9E-06 1.3E-10 64.2 14.9 108 135-243 5-112 (118)
145 1p5q_A FKBP52, FK506-binding p 98.5 1.3E-06 4.4E-11 81.5 14.2 131 133-264 146-292 (336)
146 2e2e_A Formate-dependent nitri 98.5 7E-07 2.4E-11 74.7 11.2 121 179-301 21-144 (177)
147 3gw4_A Uncharacterized protein 98.5 1.1E-06 3.9E-11 75.0 12.8 120 215-334 4-134 (203)
148 2fbn_A 70 kDa peptidylprolyl i 98.5 9.9E-08 3.4E-12 81.7 5.9 143 145-288 15-172 (198)
149 3upv_A Heat shock protein STI1 98.5 1.7E-06 5.7E-11 67.7 12.5 95 134-229 4-98 (126)
150 3gyz_A Chaperone protein IPGC; 98.5 8.8E-07 3E-11 71.7 10.4 98 133-231 35-132 (151)
151 2xcb_A PCRH, regulatory protei 98.4 1.2E-06 4.2E-11 70.2 10.3 95 134-229 18-112 (142)
152 2xcb_A PCRH, regulatory protei 98.4 1.4E-06 4.9E-11 69.8 10.4 102 163-265 13-114 (142)
153 2vgx_A Chaperone SYCD; alterna 98.4 3.1E-06 1.1E-10 68.3 12.2 99 132-231 19-117 (148)
154 2fbn_A 70 kDa peptidylprolyl i 98.4 3.5E-06 1.2E-10 71.9 12.9 131 135-266 39-186 (198)
155 2dba_A Smooth muscle cell asso 98.4 1E-05 3.5E-10 64.9 15.1 113 132-245 26-141 (148)
156 4gcn_A Protein STI-1; structur 98.4 8E-06 2.7E-10 63.9 13.7 109 378-491 8-121 (127)
157 2kck_A TPR repeat; tetratricop 98.4 3.3E-06 1.1E-10 64.0 10.8 92 136-228 8-102 (112)
158 3q49_B STIP1 homology and U bo 98.4 4.1E-06 1.4E-10 66.4 11.7 96 132-228 7-102 (137)
159 1elw_A TPR1-domain of HOP; HOP 98.4 1.9E-05 6.6E-10 60.2 15.1 95 171-266 7-101 (118)
160 3sz7_A HSC70 cochaperone (SGT) 98.4 6E-06 2.1E-10 67.9 12.7 97 133-230 10-106 (164)
161 3upv_A Heat shock protein STI1 98.3 1.1E-05 3.8E-10 62.9 13.1 87 211-298 12-98 (126)
162 2kck_A TPR repeat; tetratricop 98.3 7.5E-06 2.6E-10 61.9 11.1 95 171-266 9-106 (112)
163 3dss_A Geranylgeranyl transfer 98.3 0.00035 1.2E-08 63.9 23.8 97 220-318 91-190 (331)
164 3dss_A Geranylgeranyl transfer 98.3 0.00029 1E-08 64.4 23.0 181 221-406 48-266 (331)
165 4gcn_A Protein STI-1; structur 98.3 1.3E-05 4.6E-10 62.6 12.4 94 207-300 12-111 (127)
166 1elr_A TPR2A-domain of HOP; HO 98.3 7.2E-06 2.4E-10 64.1 10.9 94 135-228 5-104 (131)
167 1elr_A TPR2A-domain of HOP; HO 98.3 1.4E-05 4.9E-10 62.3 12.3 113 378-495 4-121 (131)
168 2dba_A Smooth muscle cell asso 98.3 3.7E-05 1.3E-09 61.5 15.0 100 165-266 25-128 (148)
169 3q49_B STIP1 homology and U bo 98.2 2.3E-05 7.8E-10 61.9 13.4 97 167-264 8-104 (137)
170 2xev_A YBGF; tetratricopeptide 98.2 2.7E-05 9.4E-10 60.7 13.6 91 140-231 8-104 (129)
171 1hxi_A PEX5, peroxisome target 98.2 1.1E-05 3.7E-10 62.5 10.9 91 138-229 21-111 (121)
172 3sz7_A HSC70 cochaperone (SGT) 98.2 3.6E-05 1.2E-09 63.2 14.0 91 274-366 13-103 (164)
173 4b4t_Q 26S proteasome regulato 98.2 0.00021 7E-09 69.1 20.7 200 279-479 11-244 (434)
174 4b4t_Q 26S proteasome regulato 98.2 9E-05 3.1E-09 71.6 18.1 192 175-366 11-240 (434)
175 3ro3_A PINS homolog, G-protein 98.2 2E-05 6.8E-10 64.1 11.5 133 380-513 11-156 (164)
176 1wao_1 Serine/threonine protei 98.1 8E-06 2.7E-10 80.0 10.1 121 140-261 12-134 (477)
177 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 3.4E-05 1.1E-09 75.2 14.1 88 204-292 318-405 (457)
178 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 2.4E-06 8.3E-11 83.3 5.6 96 237-334 317-413 (457)
179 1hxi_A PEX5, peroxisome target 98.1 2.5E-05 8.6E-10 60.4 10.4 90 175-265 24-113 (121)
180 1ihg_A Cyclophilin 40; ppiase 98.1 2.5E-05 8.7E-10 73.6 12.2 90 202-292 272-361 (370)
181 3k9i_A BH0479 protein; putativ 98.0 8.4E-06 2.9E-10 62.7 6.6 80 148-228 4-86 (117)
182 3rkv_A Putative peptidylprolyl 98.0 2.7E-05 9.1E-10 63.8 10.0 94 134-228 11-122 (162)
183 2xev_A YBGF; tetratricopeptide 98.0 0.00014 5E-09 56.5 13.8 92 174-266 8-105 (129)
184 3ro3_A PINS homolog, G-protein 98.0 3.4E-05 1.2E-09 62.6 10.4 134 344-479 11-157 (164)
185 1wao_1 Serine/threonine protei 98.0 1.5E-05 5E-10 78.1 9.4 120 175-296 13-134 (477)
186 1ihg_A Cyclophilin 40; ppiase 97.9 8.9E-05 3.1E-09 69.9 12.8 137 171-328 226-362 (370)
187 3k9i_A BH0479 protein; putativ 97.9 2.1E-05 7.2E-10 60.4 7.0 86 250-336 3-90 (117)
188 2if4_A ATFKBP42; FKBP-like, al 97.9 3.7E-05 1.3E-09 71.6 9.5 149 134-301 179-328 (338)
189 3rkv_A Putative peptidylprolyl 97.9 0.00018 6.1E-09 58.8 12.0 99 168-266 11-126 (162)
190 2l6j_A TPR repeat-containing p 97.9 2E-05 6.9E-10 59.6 5.6 65 133-197 3-67 (111)
191 1dce_A Protein (RAB geranylger 97.8 0.0012 4.2E-08 65.8 18.8 172 185-360 46-244 (567)
192 1dce_A Protein (RAB geranylger 97.8 0.0013 4.3E-08 65.7 18.4 171 149-322 44-241 (567)
193 3n71_A Histone lysine methyltr 97.7 0.00021 7.3E-09 69.5 12.3 97 204-300 352-463 (490)
194 2if4_A ATFKBP42; FKBP-like, al 97.7 6.2E-05 2.1E-09 70.1 8.0 147 169-336 180-328 (338)
195 1klx_A Cysteine rich protein B 97.7 0.0013 4.4E-08 52.0 14.6 88 243-336 31-126 (138)
196 2hr2_A Hypothetical protein; a 97.7 0.00047 1.6E-08 55.2 11.4 55 174-228 17-82 (159)
197 2hr2_A Hypothetical protein; a 97.7 0.0005 1.7E-08 55.1 11.3 95 205-299 13-129 (159)
198 1klx_A Cysteine rich protein B 97.7 0.001 3.5E-08 52.5 13.0 110 183-302 10-127 (138)
199 1na3_A Designed protein CTPR2; 97.6 0.00049 1.7E-08 49.4 10.2 80 134-214 9-88 (91)
200 3n71_A Histone lysine methyltr 97.6 0.00078 2.7E-08 65.6 14.0 124 212-335 318-463 (490)
201 2kat_A Uncharacterized protein 97.6 0.00029 9.9E-09 53.6 8.7 75 153-228 4-78 (115)
202 2l6j_A TPR repeat-containing p 97.6 8.5E-05 2.9E-09 56.0 5.4 90 169-259 5-100 (111)
203 1zu2_A Mitochondrial import re 97.4 0.00031 1E-08 56.1 7.1 99 390-496 14-134 (158)
204 1na3_A Designed protein CTPR2; 97.4 0.0016 5.4E-08 46.6 10.6 75 171-246 12-86 (91)
205 3ma5_A Tetratricopeptide repea 97.4 0.0007 2.4E-08 50.0 8.3 65 132-196 5-69 (100)
206 2kat_A Uncharacterized protein 97.4 0.0013 4.6E-08 49.8 10.1 61 236-297 18-78 (115)
207 3ma5_A Tetratricopeptide repea 97.3 0.00089 3E-08 49.4 8.1 64 377-443 6-69 (100)
208 1zu2_A Mitochondrial import re 97.2 0.00071 2.4E-08 54.0 6.8 56 254-312 63-129 (158)
209 3mkq_A Coatomer beta'-subunit; 97.1 0.041 1.4E-06 57.6 20.5 42 319-366 664-705 (814)
210 3mkq_A Coatomer beta'-subunit; 96.8 0.021 7.3E-07 59.8 16.0 150 145-331 610-760 (814)
211 3bee_A Putative YFRE protein; 96.7 0.014 4.9E-07 42.0 9.2 68 131-198 3-73 (93)
212 3ly7_A Transcriptional activat 96.6 0.036 1.2E-06 51.0 13.2 32 270-301 192-228 (372)
213 2kc7_A BFR218_protein; tetratr 96.4 0.016 5.6E-07 42.0 8.6 58 140-197 6-64 (99)
214 3ly7_A Transcriptional activat 96.4 0.23 7.7E-06 45.7 17.4 64 271-336 276-339 (372)
215 3qww_A SET and MYND domain-con 96.4 0.013 4.4E-07 56.0 9.6 61 273-333 341-408 (433)
216 3qwp_A SET and MYND domain-con 96.3 0.018 6E-07 55.1 10.0 87 247-333 297-397 (429)
217 3qww_A SET and MYND domain-con 96.3 0.011 3.7E-07 56.5 8.3 84 182-265 312-410 (433)
218 1pc2_A Mitochondria fission pr 96.2 0.078 2.7E-06 41.8 11.4 94 394-494 14-112 (152)
219 2kc7_A BFR218_protein; tetratr 96.2 0.044 1.5E-06 39.6 9.8 66 174-240 6-72 (99)
220 3mkq_B Coatomer subunit alpha; 96.2 0.24 8.1E-06 40.1 14.3 100 176-295 13-112 (177)
221 3qwp_A SET and MYND domain-con 96.2 0.036 1.2E-06 53.0 11.3 90 175-264 294-398 (429)
222 3u64_A Protein TP_0956; tetrat 96.1 0.33 1.1E-05 42.8 15.9 84 254-339 180-272 (301)
223 1wy6_A Hypothetical protein ST 96.0 0.35 1.2E-05 36.8 16.3 140 178-338 17-156 (172)
224 3mkq_B Coatomer subunit alpha; 95.9 0.55 1.9E-05 38.0 16.7 97 318-438 16-112 (177)
225 1wy6_A Hypothetical protein ST 95.9 0.41 1.4E-05 36.4 14.0 138 319-482 19-156 (172)
226 2v5f_A Prolyl 4-hydroxylase su 95.9 0.075 2.6E-06 39.1 9.6 25 170-194 7-31 (104)
227 3bee_A Putative YFRE protein; 95.8 0.17 5.9E-06 36.2 11.2 46 395-443 26-71 (93)
228 2v5f_A Prolyl 4-hydroxylase su 95.6 0.13 4.6E-06 37.7 10.2 66 132-197 3-75 (104)
229 1pc2_A Mitochondria fission pr 95.5 0.089 3.1E-06 41.4 9.1 77 152-229 16-97 (152)
230 3u64_A Protein TP_0956; tetrat 94.8 0.29 1E-05 43.1 11.1 88 394-488 179-279 (301)
231 4ady_A RPN2, 26S proteasome re 94.4 5.7 0.00019 41.5 22.0 154 246-406 499-657 (963)
232 4h7y_A Dual specificity protei 94.3 0.63 2.2E-05 36.2 10.5 52 286-338 74-125 (161)
233 4h7y_A Dual specificity protei 93.7 0.79 2.7E-05 35.7 10.1 103 202-305 12-127 (161)
234 1nzn_A CGI-135 protein, fissio 93.7 0.48 1.6E-05 35.9 8.8 89 393-488 16-109 (126)
235 1v54_E Cytochrome C oxidase po 93.0 0.69 2.4E-05 33.0 8.0 63 183-245 25-87 (109)
236 1nzn_A CGI-135 protein, fissio 92.8 0.6 2.1E-05 35.3 8.2 75 153-228 20-99 (126)
237 4b4t_P 26S proteasome regulato 92.6 7.3 0.00025 37.1 20.3 49 148-196 30-84 (445)
238 2ff4_A Probable regulatory pro 92.1 0.59 2E-05 43.8 9.2 54 174-228 177-230 (388)
239 4ady_A RPN2, 26S proteasome re 91.9 14 0.00047 38.7 23.3 349 136-500 341-720 (963)
240 4gns_B Protein CSD3, chitin bi 91.7 0.59 2E-05 47.6 9.1 129 136-264 250-398 (754)
241 4fhn_B Nucleoporin NUP120; pro 91.3 16 0.00053 39.8 20.4 85 274-360 901-989 (1139)
242 3lvg_A Clathrin heavy chain 1; 90.9 0.00044 1.5E-08 64.9 -13.0 194 133-354 82-275 (624)
243 4gns_B Protein CSD3, chitin bi 90.8 1.7 5.7E-05 44.3 11.4 51 448-500 610-660 (754)
244 2y69_E Cytochrome C oxidase su 90.6 1.6 5.4E-05 33.1 8.0 63 183-245 68-130 (152)
245 1v54_E Cytochrome C oxidase po 90.3 2 6.8E-05 30.7 7.9 78 416-496 10-89 (109)
246 3lvg_A Clathrin heavy chain 1; 89.7 0.0011 3.9E-08 62.2 -11.5 214 237-477 54-288 (624)
247 3lpz_A GET4 (YOR164C homolog); 89.5 12 0.0004 33.9 22.0 111 136-260 37-159 (336)
248 2ff4_A Probable regulatory pro 89.4 1.3 4.5E-05 41.5 8.8 55 209-263 177-231 (388)
249 2wpv_A GET4, UPF0363 protein Y 89.3 12 0.0004 33.5 20.7 111 136-260 35-157 (312)
250 4b4t_P 26S proteasome regulato 89.2 15 0.00053 34.9 23.8 239 128-366 50-319 (445)
251 4fhn_B Nucleoporin NUP120; pro 88.7 17 0.0006 39.4 18.1 147 312-469 817-989 (1139)
252 1qsa_A Protein (soluble lytic 87.8 24 0.00081 35.2 26.5 116 356-479 228-347 (618)
253 1zbp_A Hypothetical protein VP 87.2 5 0.00017 34.8 10.0 56 142-197 5-60 (273)
254 2y69_E Cytochrome C oxidase su 85.1 5.3 0.00018 30.3 7.9 80 414-496 51-132 (152)
255 3ffl_A Anaphase-promoting comp 82.8 7.6 0.00026 30.8 8.5 26 452-477 123-148 (167)
256 4b4t_R RPN7, 26S proteasome re 82.7 19 0.00066 34.0 13.2 99 238-336 132-237 (429)
257 2qx5_A Nucleoporin NIC96; mRNA 82.1 44 0.0015 33.5 17.9 23 139-161 157-179 (661)
258 2p58_C Putative type III secre 81.7 4.7 0.00016 28.7 6.1 78 113-198 22-99 (116)
259 3ffl_A Anaphase-promoting comp 81.5 7 0.00024 31.1 7.8 57 139-195 25-90 (167)
260 2uwj_G Type III export protein 80.7 13 0.00044 26.5 8.1 86 322-418 21-106 (115)
261 2p58_C Putative type III secre 80.2 14 0.00047 26.4 8.6 86 322-418 22-107 (116)
262 3o48_A Mitochondria fission 1 79.8 18 0.00061 27.5 9.2 19 176-194 86-104 (134)
263 3lpz_A GET4 (YOR164C homolog); 79.2 36 0.0012 30.7 21.5 131 242-392 40-181 (336)
264 2uwj_G Type III export protein 77.9 4.5 0.00015 28.7 5.0 78 113-198 21-98 (115)
265 1bpo_A Protein (clathrin); cla 74.4 58 0.002 30.8 12.8 128 96-228 327-454 (494)
266 4b4t_R RPN7, 26S proteasome re 74.1 31 0.0011 32.5 11.7 93 274-366 133-232 (429)
267 3txn_A 26S proteasome regulato 73.8 57 0.002 30.3 21.7 162 204-366 20-205 (394)
268 3o48_A Mitochondria fission 1 73.3 28 0.00095 26.4 11.2 80 411-494 37-119 (134)
269 1zbp_A Hypothetical protein VP 71.8 9.1 0.00031 33.2 6.5 54 213-266 7-60 (273)
270 2wpv_A GET4, UPF0363 protein Y 69.6 62 0.0021 28.9 21.2 124 144-296 23-158 (312)
271 3esl_A Checkpoint serine/threo 67.4 51 0.0017 27.1 9.8 74 128-201 71-148 (202)
272 4a1g_A Mitotic checkpoint seri 66.0 45 0.0015 26.0 11.6 71 128-201 62-134 (152)
273 1y8m_A FIS1; mitochondria, unk 64.8 46 0.0016 25.6 13.2 78 411-492 36-116 (144)
274 1wdy_A 2-5A-dependent ribonucl 64.8 46 0.0016 28.6 10.3 80 350-432 153-234 (285)
275 1wdy_A 2-5A-dependent ribonucl 64.6 15 0.00052 31.8 7.0 17 142-158 10-26 (285)
276 3hra_A Ankyrin repeat family p 57.6 17 0.00058 29.6 5.7 17 212-228 78-94 (201)
277 1y8m_A FIS1; mitochondria, unk 56.9 65 0.0022 24.8 12.3 24 383-406 82-105 (144)
278 3txn_A 26S proteasome regulato 56.7 1.2E+02 0.0043 28.0 27.7 223 242-481 104-344 (394)
279 3esl_A Checkpoint serine/threo 56.3 83 0.0028 25.8 10.5 48 436-484 100-148 (202)
280 2d2s_A Exocyst complex compone 56.0 63 0.0021 27.4 8.9 85 279-366 25-115 (235)
281 2ion_A PDCD4, programmed cell 49.1 92 0.0031 24.2 8.7 22 208-229 14-35 (152)
282 2d2s_A Exocyst complex compone 48.5 92 0.0032 26.4 8.7 21 175-195 25-45 (235)
283 2f6m_A Suppressor protein STP2 47.0 22 0.00075 23.0 3.4 47 136-182 4-50 (65)
284 2nsz_A Programmed cell death p 45.1 96 0.0033 23.3 9.9 22 208-229 12-33 (129)
285 3ltm_A Alpha-REP4; protein eng 42.7 1.3E+02 0.0046 24.3 18.3 29 449-478 155-183 (211)
286 4ets_A Ferric uptake regulatio 40.3 74 0.0025 25.1 6.5 69 431-501 14-84 (162)
287 3ltm_A Alpha-REP4; protein eng 39.1 1.5E+02 0.0052 23.9 18.8 9 313-321 132-140 (211)
288 2nsz_A Programmed cell death p 38.6 1E+02 0.0036 23.1 6.8 24 138-161 11-34 (129)
289 3eyy_A Putative iron uptake re 38.1 1.1E+02 0.0036 23.5 7.0 58 442-501 10-67 (145)
290 1k1a_A B-cell lymphoma 3-encod 37.2 1.1E+02 0.0038 25.2 7.9 22 246-267 15-36 (241)
291 4a1g_A Mitotic checkpoint seri 36.9 1.5E+02 0.005 23.1 10.0 50 256-305 84-134 (152)
292 1k1a_A B-cell lymphoma 3-encod 36.5 1.2E+02 0.0041 25.0 7.9 19 179-197 17-35 (241)
293 3kea_A K1L; tropism, ANK repea 35.5 50 0.0017 28.8 5.4 12 318-329 169-180 (285)
294 2zu6_B Programmed cell death p 34.7 2.4E+02 0.0083 24.9 10.0 187 241-431 7-254 (307)
295 3ctd_A Putative ATPase, AAA fa 34.6 2E+02 0.0067 23.8 8.9 32 251-282 49-80 (213)
296 2xig_A Ferric uptake regulatio 33.9 1.6E+02 0.0054 22.7 7.4 27 284-310 38-64 (150)
297 1oai_A Nuclear RNA export fact 33.4 29 0.001 21.9 2.4 24 391-414 33-56 (59)
298 2ion_A PDCD4, programmed cell 32.5 82 0.0028 24.5 5.4 25 137-161 12-36 (152)
299 3eyy_A Putative iron uptake re 32.0 1.4E+02 0.0046 22.9 6.7 32 288-319 33-64 (145)
300 1mzb_A Ferric uptake regulatio 32.0 1.6E+02 0.0055 22.1 7.2 32 287-318 33-64 (136)
301 2fe3_A Peroxide operon regulat 32.0 1.5E+02 0.005 22.7 6.9 58 444-502 15-72 (145)
302 1qsa_A Protein (soluble lytic 31.8 3.9E+02 0.013 26.5 34.9 256 128-406 66-347 (618)
303 2fe3_A Peroxide operon regulat 31.4 1.7E+02 0.0059 22.3 7.6 32 324-355 38-69 (145)
304 4aez_C MAD3, mitotic spindle c 30.7 2.4E+02 0.0081 23.6 8.1 50 186-235 132-183 (223)
305 4b4t_S RPN3, 26S proteasome re 30.5 3.8E+02 0.013 25.9 12.9 64 134-197 231-299 (523)
306 4aez_C MAD3, mitotic spindle c 30.5 1.3E+02 0.0045 25.1 6.6 52 254-305 131-183 (223)
307 2ijq_A Hypothetical protein; s 30.2 2E+02 0.0068 22.6 8.1 13 465-477 46-58 (161)
308 3eu9_A Huntingtin-interacting 29.8 1E+02 0.0035 25.4 6.3 12 354-365 219-230 (240)
309 1mzb_A Ferric uptake regulatio 29.2 1.8E+02 0.0062 21.8 6.9 56 445-501 12-68 (136)
310 2r9g_A AAA ATPase, central reg 28.9 2.4E+02 0.0082 23.1 9.1 18 285-302 27-44 (204)
311 2wvi_A Mitotic checkpoint seri 28.5 2.2E+02 0.0074 22.5 10.1 73 128-203 57-131 (164)
312 2w57_A Ferric uptake regulatio 27.9 1.8E+02 0.0062 22.4 6.8 32 288-319 33-64 (150)
313 3eiq_C Programmed cell death p 27.6 3.5E+02 0.012 24.6 14.3 62 345-408 220-283 (358)
314 2xig_A Ferric uptake regulatio 27.0 1.9E+02 0.0065 22.2 6.8 58 161-218 19-76 (150)
315 2rfa_A Transient receptor pote 26.6 1.2E+02 0.0041 24.9 6.2 13 214-226 11-23 (232)
316 2yru_A Steroid receptor RNA ac 26.3 1.1E+02 0.0039 22.5 4.9 42 294-335 48-89 (118)
317 4gq2_M Nucleoporin NUP120; bet 26.1 5.4E+02 0.019 27.1 12.1 108 384-500 816-950 (950)
318 3bu8_A Telomeric repeat-bindin 25.9 2.8E+02 0.0095 23.0 7.4 77 184-260 88-171 (235)
319 3t8k_A Uncharacterized protein 25.8 1.4E+02 0.0049 23.8 6.2 64 243-306 41-108 (186)
320 1ug3_A EIF4GI, eukaryotic prot 25.4 1.3E+02 0.0043 27.2 6.2 25 310-334 14-38 (339)
321 2r9g_A AAA ATPase, central reg 25.0 2.8E+02 0.0097 22.7 9.7 37 319-356 26-62 (204)
322 3l6a_A Eukaryotic translation 25.0 3.3E+02 0.011 24.8 8.9 129 380-514 14-150 (364)
323 2wvi_A Mitotic checkpoint seri 24.6 2.6E+02 0.0088 22.0 9.8 51 436-487 81-132 (164)
324 3hra_A Ankyrin repeat family p 24.6 1.5E+02 0.0052 23.5 6.2 11 355-365 116-126 (201)
325 2rfa_A Transient receptor pote 24.0 2.5E+02 0.0086 22.8 7.7 25 314-338 158-182 (232)
326 3twr_A Tankyrase-2; ankyrin re 23.7 1.2E+02 0.0043 23.1 5.4 14 213-226 15-28 (165)
327 3f3f_C Nucleoporin NUP85; stru 22.9 3E+02 0.01 26.9 8.3 73 217-291 495-568 (570)
328 3ltj_A Alpharep-4; protein eng 22.9 2.9E+02 0.0098 21.9 19.7 91 376-478 88-178 (201)
329 4ets_A Ferric uptake regulatio 22.9 2.3E+02 0.008 22.1 6.6 23 314-336 39-61 (162)
330 3ltj_A Alpharep-4; protein eng 22.7 2.9E+02 0.0099 21.9 19.2 14 343-356 153-166 (201)
331 3pvs_A Replication-associated 22.6 4.8E+02 0.017 24.5 11.8 152 252-406 166-358 (447)
332 3bge_A Predicted ATPase; struc 22.5 3.2E+02 0.011 22.3 7.9 20 286-305 21-40 (201)
333 2fu4_A Ferric uptake regulatio 22.4 1.8E+02 0.006 19.3 6.8 58 263-321 8-66 (83)
334 2w57_A Ferric uptake regulatio 22.1 2.3E+02 0.0079 21.7 6.4 57 445-502 11-68 (150)
335 2o03_A Probable zinc uptake re 21.4 1.4E+02 0.0048 22.3 4.9 46 456-501 15-60 (131)
336 2p22_A Suppressor protein STP2 21.2 74 0.0025 25.4 3.2 56 132-187 109-164 (174)
337 3qil_A Clathrin heavy chain 1; 20.9 1.3E+02 0.0046 22.2 4.3 52 240-294 35-86 (125)
338 3kea_A K1L; tropism, ANK repea 20.8 4E+02 0.014 22.8 9.1 82 212-297 101-183 (285)
339 3bge_A Predicted ATPase; struc 20.7 3.5E+02 0.012 22.1 8.4 44 243-286 10-56 (201)
340 3jxi_A Vanilloid receptor-rela 20.4 1.6E+02 0.0054 24.8 5.7 23 246-268 11-33 (260)
341 3e3v_A Regulatory protein RECX 20.3 3.3E+02 0.011 21.6 8.5 24 454-477 139-163 (177)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.8e-39 Score=327.33 Aligned_cols=455 Identities=12% Similarity=0.029 Sum_probs=370.6
Q ss_pred cccccccCCCcc-cccccccCCCCChhhHHHHHHH-hcCCCCHHH--HHHHhhccccCCCCcCCHHHHHHHHHHhh--hC
Q 010215 40 PIESYCSDGARL-DHHQVLCVDSPRLPDIDVIISK-VHVGSSEDE--VFQSLKQDHVCNAIQPSHYLVNKLIHRFK--DD 113 (515)
Q Consensus 40 l~~~y~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~--~~~~~~~~~~~~g~~p~~~~~~~ll~~~~--~~ 113 (515)
+...++++|... ....+..++.+++..|+.++.. .+.+...++ +|+.+. +..|+..++..+...+. ++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~------~~~p~~~~~~~l~~~~~~~g~ 132 (597)
T 2xpi_A 59 LANNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVL------DITGNPNDAFWLAQVYCCTGD 132 (597)
T ss_dssp GC---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHHCCHHHHHHHHHHHHHTTC
T ss_pred hcccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHH------hhCCCchHHHHHHHHHHHcCc
Confidence 344566666543 4556777888899999999954 555554444 566664 35688889988888876 58
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCC----------------CCCHHHHHHHHHH
Q 010215 114 WKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGH----------------IVTLNTIAKVMRR 177 (515)
Q Consensus 114 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----------------~~~~~~~~~li~~ 177 (515)
++.|..+|+.+. ..++++.+++.++.+|.++|++++|.++|+++.... +.+..++..++.+
T Consensus 133 ~~~A~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 209 (597)
T 2xpi_A 133 YARAKCLLTKED---LYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQV 209 (597)
T ss_dssp HHHHHHHHHHTC---GGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---ccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHH
Confidence 999999999884 236789999999999999999999999999543322 2246778888999
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH--------------------------------------HHHHHHcCCH
Q 010215 178 FSGAGQWEDAVRTFDELGTFGLEKNTETMNLL--------------------------------------LDTLCKEGKV 219 (515)
Q Consensus 178 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l--------------------------------------l~~~~~~~~~ 219 (515)
|.+.|++++|+++|+++.+.+ +.+...+..+ +..|.+.|++
T Consensus 210 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 288 (597)
T 2xpi_A 210 YTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDEL 288 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchH
Confidence 999999999999999998864 2234443333 4456678899
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010215 220 ELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQ 299 (515)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 299 (515)
++|.++|+++... +++..+++.++.+|.+.|++++|..+|+++.+.+ +.+..+|+.++.++.+.|++++|.++++++.
T Consensus 289 ~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 366 (597)
T 2xpi_A 289 RRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLV 366 (597)
T ss_dssp HHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999996544 6899999999999999999999999999998765 4478899999999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHH
Q 010215 300 AQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTS 379 (515)
Q Consensus 300 ~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 379 (515)
+.. +.+..++..++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|..+|+ .+.+.+ +.+..
T Consensus 367 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~-~~~~~ 442 (597)
T 2xpi_A 367 DRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYT-TAARLF-QGTHL 442 (597)
T ss_dssp HHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHHHTT-TTCSH
T ss_pred hhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHhC-ccchH
Confidence 653 4578999999999999999999999999998864 5678899999999999999999999999 776543 34788
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcC---CCCCC--HHHH
Q 010215 380 TFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKH---HLSLD--ITTY 454 (515)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---~~~p~--~~~~ 454 (515)
+|+.++.+|.+.|++++|+++|+++.+.. +.+..+|..+...|.+.|++++|. ++++++.+.. +..|+ ..+|
T Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~p~~~~~~~ 519 (597)
T 2xpi_A 443 PYLFLGMQHMQLGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAI-NHFQNALLLVKKTQSNEKPWAATW 519 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHSCCCSGGGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHH-HHHHHHHHhhhccccchhhHHHHH
Confidence 99999999999999999999999999865 567899999999999999999999 9999998732 56787 7899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 455 TLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMKK 514 (515)
Q Consensus 455 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 514 (515)
..++.+|.+.|++++|.++++++.+.+ +.+..+|..+..+|...|++++|.+.++.+.+
T Consensus 520 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 520 ANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999999999999999999999998754 45788999999999999999999999998865
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.3e-35 Score=300.81 Aligned_cols=403 Identities=11% Similarity=0.042 Sum_probs=349.9
Q ss_pred cCCHHHHHHHHHHhh--hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHH
Q 010215 97 QPSHYLVNKLIHRFK--DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKV 174 (515)
Q Consensus 97 ~p~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 174 (515)
.++...++.++..+. ++++.|..+|+.+. +..|+..++..++.+|.+.|++++|..+|+.+... +.+..++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l 156 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVL---DITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLA 156 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHH---hhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHH
Confidence 367888999999886 58999999999986 34568899999999999999999999999988542 4567788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhC---------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhh
Q 010215 175 MRRFSGAGQWEDAVRTFDELGTF---------------GLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHT 239 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~---------------g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 239 (515)
+.+|.+.|++++|+++|+++... |.+++..+|+.++.+|.+.|++++|.+.|+++....+.+...
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 236 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA 236 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHH
Confidence 99999999999999999853221 223468899999999999999999999999976555555555
Q ss_pred HHHH--------------------------------------HHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHH
Q 010215 240 FNIF--------------------------------------IHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQS 281 (515)
Q Consensus 240 ~~~l--------------------------------------i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 281 (515)
+..+ +..|.+.|++++|.++|+++.+. +++..+|+.++.+
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence 4444 55667889999999999999875 5899999999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010215 282 YCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEA 361 (515)
Q Consensus 282 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 361 (515)
|.+.|++++|+++|+++.+.+ +.+..++..++.++.+.|++++|.++++++.+.. +.+..+++.++.+|.+.|++++|
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHH
Confidence 999999999999999999865 3377889999999999999999999999998764 66789999999999999999999
Q ss_pred HHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010215 362 VYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDM 441 (515)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 441 (515)
..+|+ .+.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|. ++|+++
T Consensus 393 ~~~~~-~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~ 467 (597)
T 2xpi_A 393 RRYFS-KSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF--QGTHLPYLFLGMQHMQLGNILLAN-EYLQSS 467 (597)
T ss_dssp HHHHH-HHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--TTCSHHHHHHHHHHHHHTCHHHHH-HHHHHH
T ss_pred HHHHH-HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCCHHHHH-HHHHHH
Confidence 99999 665532 2468899999999999999999999999999865 567889999999999999999999 999999
Q ss_pred HHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 442 VNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGH----DITPR--YQTCRLILDEVKQKHMYDAAEKIEAVMKK 514 (515)
Q Consensus 442 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 514 (515)
.+.. +.+..+|..++..|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|++++|+++++.+.+
T Consensus 468 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 468 YALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp HHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 8843 346889999999999999999999999999875 66888 78999999999999999999999998764
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=6.8e-31 Score=258.42 Aligned_cols=187 Identities=18% Similarity=0.246 Sum_probs=158.3
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCC---------hhHHHHHHHHHHHCCCCCCHH
Q 010215 238 HTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYN---------FSKVYELLDEMQAQGCPPNVV 308 (515)
Q Consensus 238 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~A~~~~~~m~~~g~~~~~~ 308 (515)
.+++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+. .++|.++|++|...|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45777788888888888888888888888888888888888888876554 577888888888888888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHH
Q 010215 309 TYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMF 388 (515)
Q Consensus 309 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 388 (515)
||+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|+ .|.+.|+.||..+|++||.+|
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~-~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA-HMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888888 888888888888888888888
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHh
Q 010215 389 SHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFK 426 (515)
Q Consensus 389 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 426 (515)
++.|+.++|.++|++|.+.| ..|+..||+.++..++.
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g-~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLV-RQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-SSBCHHHHHHHHHHHHS
T ss_pred hhCCCHHHHHHHHHHHHHhC-CCcCHHHHHHHHHHHhc
Confidence 88888888888888888888 88888888888887765
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.4e-30 Score=256.22 Aligned_cols=207 Identities=14% Similarity=0.192 Sum_probs=181.1
Q ss_pred hHHHHHHHHHHhCCCCccH-hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------H
Q 010215 254 DEAQWTIQEMKGHGCHPCV-ISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGD---------F 323 (515)
Q Consensus 254 ~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---------~ 323 (515)
..+..+.+++.+++..+.+ ..++.+|++|++.|++++|+++|++|.+.|+.||..||+++|.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3456666777777665443 46889999999999999999999999999999999999999999987654 7
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 010215 324 EEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEE 403 (515)
Q Consensus 324 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 403 (515)
+.|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|+ .|.+.|+.||..+|+++|.+|++.|++++|.++|++
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~-~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVK-QMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHH-HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 010215 404 MNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRA 464 (515)
Q Consensus 404 m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 464 (515)
|.+.| +.||..||+.|+.+|++.|+.++|. +++++|.+ .+..|+..||+.++..|...
T Consensus 166 M~~~G-~~Pd~~ty~~Li~~~~~~g~~d~A~-~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 166 MVESE-VVPEEPELAALLKVSMDTKNADKVY-KTLQRLRD-LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTT-CCCCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred HHhcC-CCCCHHHHHHHHHHHhhCCCHHHHH-HHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence 99999 9999999999999999999999999 99999998 79999999999999998764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.4e-27 Score=230.66 Aligned_cols=374 Identities=12% Similarity=0.102 Sum_probs=293.1
Q ss_pred hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010215 112 DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTF 191 (515)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 191 (515)
++++.|...+..+... .+.+...+..+...+.+.|++++|...++.....++.+..++..+...|.+.|++++|++.|
T Consensus 13 g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 90 (388)
T 1w3b_A 13 GDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHY 90 (388)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6888888888877532 24466777788888888888888988888888888888888888888888889999999888
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCcc
Q 010215 192 DELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPC 271 (515)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 271 (515)
+++.+.. +.+..+|..+..++...|++++|.+.|+++....|.+...+..+...+...|++++|.+.|+++.+.. +.+
T Consensus 91 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~ 168 (388)
T 1w3b_A 91 RHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNF 168 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCC
Confidence 8887753 33566788888888888888888888888655556667778888888888889999988888887753 335
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 010215 272 VISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYT 351 (515)
Q Consensus 272 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 351 (515)
..+|..+...+...|++++|++.|+++.+.+ +.+...+..+...+...|++++|...+++..+.. +.+..++..+...
T Consensus 169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 246 (388)
T 1w3b_A 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACV 246 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHH
Confidence 6788888888888888889988888888764 2356778888888888888888888888887764 4457788888888
Q ss_pred HHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChH
Q 010215 352 LGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTD 431 (515)
Q Consensus 352 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~ 431 (515)
|.+.|++++|...|+ .+.+.. +.+..+|..+...+.+.|++++|++.|+++.+.. +.+..++..+...+...|+++
T Consensus 247 ~~~~g~~~~A~~~~~-~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~ 322 (388)
T 1w3b_A 247 YYEQGLIDLAIDTYR-RAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHTTCHHHHHHHHH-HHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHcCCHHHHHHHHH-HHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHcCCHH
Confidence 888889998888888 555532 2256778888888888889999998888888754 567778888888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 010215 432 ECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPR-YQTCRLILDEVKQKH 500 (515)
Q Consensus 432 ~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g 500 (515)
+|+ ..++++.+. .+.+...+..+...+.+.|++++|.+.++++.+ +.|+ ...|..+...+...|
T Consensus 323 ~A~-~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 323 EAV-RLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHH-HHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred HHH-HHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHcc
Confidence 888 888888662 223467788888888888999999988888886 4454 455666655555444
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=4.9e-27 Score=226.75 Aligned_cols=364 Identities=9% Similarity=-0.012 Sum_probs=312.5
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 010215 140 MVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKV 219 (515)
Q Consensus 140 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 219 (515)
+...+.+.|++++|.+.++.+.+.++.+..++..+...+.+.|++++|...++...+.. +.+..+|..+...+.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 45667789999999999999998888888888888999999999999999999888753 56888999999999999999
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010215 220 ELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQ 299 (515)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 299 (515)
++|...|+++....|.+..+|..+..++.+.|++++|...|+++.+.. +.+...+..+...+...|++++|++.|+++.
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999999666567778889999999999999999999999998764 3345677888888999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHH
Q 010215 300 AQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTS 379 (515)
Q Consensus 300 ~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 379 (515)
+.. +.+..++..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...|+ ...... +.+..
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~-~al~~~-p~~~~ 238 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYL-RALSLS-PNHAV 238 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHH-HHHHHC-TTCHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH-HHHhhC-cCCHH
Confidence 763 3357889999999999999999999999999875 5567889999999999999999999998 544432 23578
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 010215 380 TFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIH 459 (515)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~ 459 (515)
++..+...|...|++++|++.|+++.+.. +.+..++..+...+.+.|++++|. ..++++.+.. +.+..+|..+..
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~--p~~~~~~~~l~~ 313 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAE-DCYNTALRLC--PTHADSLNNLAN 313 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHH-HHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhC--cccHHHHHHHHH
Confidence 89999999999999999999999999854 445778999999999999999999 9999998842 456788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010215 460 GLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMKKL 515 (515)
Q Consensus 460 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~l 515 (515)
.+.+.|++++|.+.++++.+. .+.+..++..+...+.+.|++++|.+.++.+.++
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999863 2445778888889999999999999999987653
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=3.2e-23 Score=204.16 Aligned_cols=362 Identities=13% Similarity=0.059 Sum_probs=278.8
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 010215 131 EHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLL 210 (515)
Q Consensus 131 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 210 (515)
+.++..+..+...|.+.|++++|..+|+++...++.+..++..++.+|...|++++|++.|+++.+.+ +.+..++..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 44677888888899999999999999999888788888888888889999999999999999888764 44678888888
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCCh---hhHHHHH------------HHHHccCChhHHHHHHHHHHhCCCCccHhHH
Q 010215 211 DTLCKEGKVELARSVFLELKSCIPPNA---HTFNIFI------------HGWCKINRVDEAQWTIQEMKGHGCHPCVISY 275 (515)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li------------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 275 (515)
.+|...|++++|.+.|+++....+.+. ..+..++ ..+.+.|++++|...|+++.+.. +.+..++
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 180 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELR 180 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 899999999999999988766555555 6666654 44888899999999999988754 4467788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH-------
Q 010215 276 STIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCL------- 348 (515)
Q Consensus 276 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l------- 348 (515)
..+..+|.+.|++++|++.|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHH
Confidence 889999999999999999999887753 3467888889999999999999999999988764 3445555444
Q ss_pred -----HHHHHhcCCHHHHHHHHHhhchhCCCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHH
Q 010215 349 -----IYTLGRASRVQEAVYVYQVEMPENGVAPD-----TSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFH 418 (515)
Q Consensus 349 -----i~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~ 418 (515)
...|.+.|++++|...|+ .+... .|+ ...|..+...+.+.|++++|+..++++.+.. +.+...+.
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~-~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~ 333 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYE-SVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME--PDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH-HHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH-HHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHH
Confidence 788889999999999998 55543 344 4478888889999999999999999988753 44678888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHH------------HHhcC-----CHHHHHHHHHHH-Hh
Q 010215 419 PLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD-ITTYTLVIHG------------LCRAN-----KCEWAYLLFKEM-IG 479 (515)
Q Consensus 419 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~-~~~~~~li~~------------~~~~g-----~~~~A~~~~~~m-~~ 479 (515)
.+..+|...|++++|. ..++++.+ ..|+ ...+..+..+ |...| +.+++.+.++++ .+
T Consensus 334 ~l~~~~~~~~~~~~A~-~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~ 409 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAI-QDYETAQE---HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ 409 (450)
T ss_dssp HHHHHHHHTTCHHHHH-HHHHHHHT---TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHH-HHHHHHHH---hCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999998 88988877 3443 5555555532 33334 567778888863 32
Q ss_pred CCCCCC----H-------HHHHHHHHHHHhcCCHHHHHH
Q 010215 480 HDITPR----Y-------QTCRLILDEVKQKHMYDAAEK 507 (515)
Q Consensus 480 ~~~~p~----~-------~~~~~ll~~~~~~g~~~~a~~ 507 (515)
..|| . ..+..+..+|...|+.++..+
T Consensus 410 --~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 410 --WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp --SCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred --hCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 2332 2 266677777777777665443
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.9e-23 Score=209.36 Aligned_cols=388 Identities=12% Similarity=0.023 Sum_probs=213.0
Q ss_pred hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010215 112 DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTF 191 (515)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 191 (515)
++++.|+..|..+.... |++.++..+...|.+.|++++|.+.|+++.+.++.+..++..++.+|.+.|++++|+..|
T Consensus 20 g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 96 (514)
T 2gw1_A 20 KKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDL 96 (514)
T ss_dssp SCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 68999999999986432 589999999999999999999999999999988889999999999999999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-----------------------------------h---hcC-
Q 010215 192 DELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLE-----------------------------------L---KSC- 232 (515)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-----------------------------------~---~~~- 232 (515)
+++.+.+ +++......++..+........+.+.+.. + ...
T Consensus 97 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (514)
T 2gw1_A 97 SVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPEL 175 (514)
T ss_dssp HHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCC
T ss_pred HHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHH
Confidence 9998875 23333322222222221111111111100 0 000
Q ss_pred ------CCCChhhHHHHHHHHHc---cCChhHHHHHHHHHHh-----CCC--------CccHhHHHHHHHHHHhcCChhH
Q 010215 233 ------IPPNAHTFNIFIHGWCK---INRVDEAQWTIQEMKG-----HGC--------HPCVISYSTIIQSYCRQYNFSK 290 (515)
Q Consensus 233 ------~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----~~~--------~~~~~~~~~li~~~~~~g~~~~ 290 (515)
.+.+...+..+...+.. .|++++|...|+++.+ ..- +.+..+|..+...+...|++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (514)
T 2gw1_A 176 TFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLG 255 (514)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHH
Confidence 01112233333333332 5555555555555544 200 1123345555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhch
Q 010215 291 VYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMP 370 (515)
Q Consensus 291 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 370 (515)
|++.++++.+.. |+..++..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...|+ ...
T Consensus 256 A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~-~~~ 331 (514)
T 2gw1_A 256 AHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFD-KAK 331 (514)
T ss_dssp HHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHH-HHH
T ss_pred HHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHH-HHH
Confidence 555555555442 224455555555555555555555555555443 3334455555555555555555555555 333
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC
Q 010215 371 ENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD 450 (515)
Q Consensus 371 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~ 450 (515)
.... .+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|. ..++++.+..+-.++
T Consensus 332 ~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~-~~~~~a~~~~~~~~~ 407 (514)
T 2gw1_A 332 ELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKAL-KQYDLAIELENKLDG 407 (514)
T ss_dssp HTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHTSSS
T ss_pred HhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHhhhccch
Confidence 2211 133445555555555555555555555555432 223344555555555555555555 555555442221122
Q ss_pred ----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010215 451 ----ITTYTLVIHGLCR---ANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVM 512 (515)
Q Consensus 451 ----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 512 (515)
...|..+...+.. .|++++|.+.++++.+.. +.+..++..+...+...|++++|.+.++..
T Consensus 408 ~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 408 IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp CSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 2245555555555 555555555555555421 223444445555555555555555555544
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.3e-22 Score=199.82 Aligned_cols=329 Identities=12% Similarity=0.030 Sum_probs=266.3
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 010215 151 DQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELK 230 (515)
Q Consensus 151 ~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 230 (515)
..+...|.++...++.+...+..++..+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...|+++.
T Consensus 9 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344555566666777788888889999999999999999999998753 5578999999999999999999999999976
Q ss_pred cCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccH---hHHHHH------------HHHHHhcCChhHHHHHH
Q 010215 231 SCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCV---ISYSTI------------IQSYCRQYNFSKVYELL 295 (515)
Q Consensus 231 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l------------i~~~~~~g~~~~A~~~~ 295 (515)
...|.+..++..+..+|.+.|++++|...|+++.+.. +.+. ..|..+ ...+...|++++|++.|
T Consensus 88 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 88 QLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6667789999999999999999999999999999864 2234 566655 44488999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCC
Q 010215 296 DEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVA 375 (515)
Q Consensus 296 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 375 (515)
+++.+.. +.+..++..+...|.+.|++++|.+.++++.+.. +.+..++..+...|...|++++|...|+ .+.... +
T Consensus 167 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~-p 242 (450)
T 2y4t_A 167 DKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVR-ECLKLD-Q 242 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHC-T
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHhC-C
Confidence 9998763 4478889999999999999999999999998864 5678999999999999999999999999 665432 2
Q ss_pred CCHHHHHHH------------HHHHHhCCCHHHHHHHHHHHHhCCCCCCC-----HHhHHHHHHHHHhcCChHHHHHHHH
Q 010215 376 PDTSTFNTM------------ITMFSHHGHHEKAFHVLEEMNKLEHCKPN-----VQTFHPLLKSCFKTGKTDECLSQLL 438 (515)
Q Consensus 376 ~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~~p~-----~~~~~~ll~~~~~~g~~~~A~~~~~ 438 (515)
.+...+..+ ...+.+.|++++|+++|+++.+.. |+ ...+..+...+.+.|++++|+ ..+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~ 318 (450)
T 2y4t_A 243 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE---PSIAEYTVRSKERICHCFSKDEKPVEAI-RVC 318 (450)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CSSHHHHHHHHHHHHHHHHTTTCHHHHH-HHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHHHHCCCHHHHH-HHH
Confidence 244455444 788999999999999999999843 54 447888899999999999999 999
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHH
Q 010215 439 DDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRY-QTCRLIL 493 (515)
Q Consensus 439 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll 493 (515)
+++.+.. +.+...|..+..+|...|++++|.+.++++.+ +.|+. ..+..+.
T Consensus 319 ~~a~~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 319 SEVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHH
T ss_pred HHHHHhC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 9988732 23678999999999999999999999999996 55654 4444444
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.7e-22 Score=199.92 Aligned_cols=397 Identities=11% Similarity=0.008 Sum_probs=301.0
Q ss_pred HhcCCCCHHH--HHHHhhccccCCCCcCCHHHHHHHHHHhh--hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCC
Q 010215 73 KVHVGSSEDE--VFQSLKQDHVCNAIQPSHYLVNKLIHRFK--DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVR 148 (515)
Q Consensus 73 ~~~~~~~~~~--~~~~~~~~~~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 148 (515)
....+...++ .|+.+... .|+...+..+...+. ++++.|...+..+... .+.+..++..+..+|.+.|
T Consensus 16 ~~~~g~~~~A~~~~~~al~~------~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 16 FFRNKKYDDAIKYYNWALEL------KEDPVFYSNLSACYVSVGDLKKVVEMSTKALEL--KPDYSKVLLRRASANEGLG 87 (514)
T ss_dssp HHHTSCHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTT
T ss_pred HHHhccHHHHHHHHHHHHhc------CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc--ChHHHHHHHHHHHHHHHHh
Confidence 3455555544 56666553 378888877777665 6999999999998633 2457889999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-------------------------------
Q 010215 149 QMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTF------------------------------- 197 (515)
Q Consensus 149 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------------------- 197 (515)
++++|...|+.+...++.+......++..+........+.+.+..+...
T Consensus 88 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASF 167 (514)
T ss_dssp CHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHH
Confidence 9999999999998877765555444444444333333332222111100
Q ss_pred ----CC---------CCCHHHHHHHHHHHHH---cCCHHHHHHHHHHhhc-----C--C-------CCChhhHHHHHHHH
Q 010215 198 ----GL---------EKNTETMNLLLDTLCK---EGKVELARSVFLELKS-----C--I-------PPNAHTFNIFIHGW 247 (515)
Q Consensus 198 ----g~---------~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~--~-------~~~~~~~~~li~~~ 247 (515)
.. +.+...+......+.. .|++++|...|+++.. . . +.+..++..+...+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (514)
T 2gw1_A 168 FGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFK 247 (514)
T ss_dssp HTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHH
Confidence 00 1114444444444444 7999999999998544 1 1 34467888899999
Q ss_pred HccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010215 248 CKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAI 327 (515)
Q Consensus 248 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 327 (515)
...|++++|...|+++.+.. |+...|..+...+...|++++|++.++++.+.. +.+..++..+...+...|++++|.
T Consensus 248 ~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 248 FLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAG 324 (514)
T ss_dssp HHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHH
T ss_pred HHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999998864 448889999999999999999999999998764 336778899999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010215 328 RITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKL 407 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 407 (515)
..++++.+.. +.+...+..+...|...|++++|...++ ...+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 325 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~-~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 325 KDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFS-EAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHH-HHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999998875 4567788899999999999999999999 554432 235678889999999999999999999999874
Q ss_pred CCCCCC----HHhHHHHHHHHHh---cCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010215 408 EHCKPN----VQTFHPLLKSCFK---TGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGH 480 (515)
Q Consensus 408 ~~~~p~----~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 480 (515)
.+..++ ...+..+...+.. .|++++|. ..++++.+.. +.+...+..+...+.+.|++++|.+.+++..+
T Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~-~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~- 477 (514)
T 2gw1_A 402 ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEAT-NLLEKASKLD--PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD- 477 (514)
T ss_dssp HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHH-HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHH-HHHHHHHHhC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-
Confidence 311222 3378888999999 99999999 9999988742 23577888999999999999999999999987
Q ss_pred CCCCCHHH
Q 010215 481 DITPRYQT 488 (515)
Q Consensus 481 ~~~p~~~~ 488 (515)
+.|+...
T Consensus 478 -~~~~~~~ 484 (514)
T 2gw1_A 478 -LARTMEE 484 (514)
T ss_dssp -HCSSHHH
T ss_pred -hccccHH
Confidence 4566543
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=2.1e-21 Score=195.62 Aligned_cols=385 Identities=10% Similarity=0.032 Sum_probs=242.7
Q ss_pred hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010215 112 DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTF 191 (515)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 191 (515)
++++.|+..|..+.... +.++.++..+...|.+.|++++|.+.|+++...++.+..++..+...+...|++++|++.|
T Consensus 39 g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 116 (537)
T 3fp2_A 39 KNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL 116 (537)
T ss_dssp TCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 57788888888886322 4578889999999999999999999999998888888888888889999999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-------CCCChh--------------------------
Q 010215 192 DELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSC-------IPPNAH-------------------------- 238 (515)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~-------------------------- 238 (515)
+.+.. .|+.. ...+..+...+....|...++.+... ..|+..
T Consensus 117 ~~~~~---~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (537)
T 3fp2_A 117 SVLSL---NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDT 191 (537)
T ss_dssp HHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCS
T ss_pred HHHhc---CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcccccc
Confidence 64422 23221 11222333334445555555553211 011111
Q ss_pred ----hHHHHHHHHHcc--------CChhHHHHHHHHHHhCCCCcc--------HhHHHHHHHHHHhcCChhHHHHHHHHH
Q 010215 239 ----TFNIFIHGWCKI--------NRVDEAQWTIQEMKGHGCHPC--------VISYSTIIQSYCRQYNFSKVYELLDEM 298 (515)
Q Consensus 239 ----~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m 298 (515)
....+...+... |++++|..+++++.+.. |+ ..+|..+...+...|++++|++.+++.
T Consensus 192 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~ 269 (537)
T 3fp2_A 192 AYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQES 269 (537)
T ss_dssp SHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 222222222221 36677777777776653 22 224555666667777777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCH
Q 010215 299 QAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDT 378 (515)
Q Consensus 299 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 378 (515)
.+. .|+..++..+...+...|++++|.+.++++.+.. +.+..++..+...|...|++++|...|+ ...... +.+.
T Consensus 270 ~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~-~a~~~~-~~~~ 344 (537)
T 3fp2_A 270 INL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQ-KAQSLN-PENV 344 (537)
T ss_dssp HHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHC-TTCS
T ss_pred Hhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHhC-CCCH
Confidence 765 3446667777777777777777777777777654 4456677777777777777777777777 443322 1234
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCC----CHHHH
Q 010215 379 STFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSL----DITTY 454 (515)
Q Consensus 379 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p----~~~~~ 454 (515)
..|..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|. ..++++.+..+-.+ ....+
T Consensus 345 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~~~~~~~~~~~~~~~~ 421 (537)
T 3fp2_A 345 YPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAI-KQYDIAKRLEEVQEKIHVGIGPL 421 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHCSSCSSTTHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHH-HHHHHHHHcCCcchhhHHHHHHH
Confidence 567777777777777777777777777643 334556667777777777777777 67776655221111 12223
Q ss_pred HHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 455 TLVIHGLCRA----------NKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMKK 514 (515)
Q Consensus 455 ~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 514 (515)
......+.+. |++++|...+++..+.. +.+..++..+...+...|++++|.+.++...+
T Consensus 422 ~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 422 IGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444556666 77777777777776532 33455666666777777777777777776543
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=1.1e-19 Score=172.71 Aligned_cols=329 Identities=11% Similarity=0.036 Sum_probs=207.4
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 010215 133 SSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDT 212 (515)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 212 (515)
|+..+..+...+.+.|++++|...|+++...++.+..++..+...+...|++++|+..|+++.+.. +.+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 355667777778888888888888888877777777777777788888888888888888777653 3356777777777
Q ss_pred HHHcCCHHHHHHHHHHhhcCCC---CChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChh
Q 010215 213 LCKEGKVELARSVFLELKSCIP---PNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFS 289 (515)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 289 (515)
+...|++++|...+++.....+ .+...+..+...+. ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 7778888888888777554444 34444444421100 011222234455555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 010215 290 KVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEM 369 (515)
Q Consensus 290 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 369 (515)
+|++.++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...|+ ..
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~-~a 214 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVR-EC 214 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH-HH
Confidence 5555555555432 2244455555555555555555555555555443 3344555555555555555555555555 33
Q ss_pred hhCCCCCCHHHH------------HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC-H----HhHHHHHHHHHhcCChHH
Q 010215 370 PENGVAPDTSTF------------NTMITMFSHHGHHEKAFHVLEEMNKLEHCKPN-V----QTFHPLLKSCFKTGKTDE 432 (515)
Q Consensus 370 ~~~~~~~~~~~~------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~----~~~~~ll~~~~~~g~~~~ 432 (515)
.+.. +.+...+ ..+...+.+.|++++|.+.++++.+.. |+ . ..+..+...+...|++++
T Consensus 215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE---PSVAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSSHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHHHHHccCHHH
Confidence 2211 1122222 233566788889999999988888754 33 2 234456778888899999
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 010215 433 CLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPR-YQTCRLILDEVK 497 (515)
Q Consensus 433 A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~ 497 (515)
|+ ..+++..+.. +.+...|..+...+.+.|++++|.+.+++..+ +.|+ ...+..+..+..
T Consensus 291 A~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 291 AI-RICSEVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEKAQR 351 (359)
T ss_dssp HH-HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHHH
Confidence 88 8888887732 23577888888889999999999999999886 4555 445555555443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=9.8e-19 Score=166.19 Aligned_cols=314 Identities=14% Similarity=0.110 Sum_probs=227.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 010215 169 NTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWC 248 (515)
Q Consensus 169 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 248 (515)
..+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++....|.+...+..+...+.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 344555666677777777777777766543 3356666666666677777777777776644444555666666666666
Q ss_pred ccCChhHHHHHHHHHHhCCCCc----cHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 010215 249 KINRVDEAQWTIQEMKGHGCHP----CVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFE 324 (515)
Q Consensus 249 ~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 324 (515)
+.|++++|...|++..+.. | +...+..+...+. ...+..+...+...|+++
T Consensus 83 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 6666666666666666542 3 2222222221110 112333467888999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010215 325 EAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEM 404 (515)
Q Consensus 325 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 404 (515)
+|.+.++++.+.. +.+...+..+...|...|++++|...++ ...... +.+...+..+...+...|++++|.+.|++.
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~-~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLK-AASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH-HHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHH-HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999875 5678899999999999999999999999 655543 347889999999999999999999999999
Q ss_pred HhCCCCCCCHHhHH------------HHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHHhcCCHHHH
Q 010215 405 NKLEHCKPNVQTFH------------PLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDI--TTYTLVIHGLCRANKCEWA 470 (515)
Q Consensus 405 ~~~~~~~p~~~~~~------------~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A 470 (515)
.+.. +.+...+. .+...+.+.|++++|+ ..+++..+..+-.+.. ..+..+...+...|++++|
T Consensus 215 ~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 215 LKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT-SKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 9854 23333332 2366789999999999 9999998844322211 3355688899999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010215 471 YLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMKKL 515 (515)
Q Consensus 471 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~l 515 (515)
.+.+++..+.. +.+..+|..+...+...|++++|.+.++...++
T Consensus 292 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 292 IRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999998742 346778888888999999999999999987653
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=2.1e-19 Score=180.93 Aligned_cols=386 Identities=11% Similarity=0.040 Sum_probs=284.1
Q ss_pred hcCCCCH--HHHHHHhhccccCCCCcC-CHHHHHHHHHHhh--hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCC
Q 010215 74 VHVGSSE--DEVFQSLKQDHVCNAIQP-SHYLVNKLIHRFK--DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVR 148 (515)
Q Consensus 74 ~~~~~~~--~~~~~~~~~~~~~~g~~p-~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 148 (515)
...+... ...|+..... .| +...+..+-..+. ++++.|+..++.+.... +.++.++..+...|.+.|
T Consensus 36 ~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g 107 (537)
T 3fp2_A 36 FTAKNFNEAIKYYQYAIEL------DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLG 107 (537)
T ss_dssp HHTTCCC-CHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHHHHHhh------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcC
Confidence 4444444 4467776653 34 4455555444443 69999999999986332 457889999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCCCHHHH----------------
Q 010215 149 QMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTF------GLEKNTETM---------------- 206 (515)
Q Consensus 149 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~~~~~~---------------- 206 (515)
++++|...|+ ....++...... +..+...+...+|+..++.+... ...|+....
T Consensus 108 ~~~~A~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 108 NFTDAMFDLS-VLSLNGDFDGAS---IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp CHHHHHHHHH-HHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred CHHHHHHHHH-HHhcCCCCChHH---HHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 9999999997 444444333332 44556666678888888888553 112222221
Q ss_pred --------------HHHHHHHH--------HcCCHHHHHHHHHHhhcCCCCChh-------hHHHHHHHHHccCChhHHH
Q 010215 207 --------------NLLLDTLC--------KEGKVELARSVFLELKSCIPPNAH-------TFNIFIHGWCKINRVDEAQ 257 (515)
Q Consensus 207 --------------~~ll~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~ 257 (515)
..+...+. ..|++++|..+++++....|.+.. ++..+...+...|++++|.
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 263 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQ 263 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHH
Confidence 12221211 124788999999987665555544 4667778888999999999
Q ss_pred HHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010215 258 WTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVG 337 (515)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 337 (515)
..|++..+. .|+...|..+...+...|++++|++.++++.+.. +.+..++..+...+...|++++|.+.++++.+..
T Consensus 264 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 264 VLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp HHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 999999886 4668889999999999999999999999998764 3467889999999999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC----C
Q 010215 338 SKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKP----N 413 (515)
Q Consensus 338 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p----~ 413 (515)
+.+...+..+...|...|++++|...++ ...+.. +.+...+..+...+...|++++|.+.|+++.+..+..+ .
T Consensus 341 -~~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 417 (537)
T 3fp2_A 341 -PENVYPYIQLACLLYKQGKFTESEAFFN-ETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417 (537)
T ss_dssp -TTCSHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH
Confidence 4557788999999999999999999999 555432 33567888999999999999999999999877431111 1
Q ss_pred HHhHHHHHHHHHhc----------CChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010215 414 VQTFHPLLKSCFKT----------GKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGH 480 (515)
Q Consensus 414 ~~~~~~ll~~~~~~----------g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 480 (515)
...+......+... |++++|+ ..+++..+.. +.+...|..+...+.+.|++++|.+.+++..+.
T Consensus 418 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~-~~~~~a~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAI-KLLTKACELD--PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp THHHHHHHHHHHHHHTC----CCHHHHHHHH-HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccchhhhHhHHHHHH-HHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 12234445667777 9999999 9999998842 235778999999999999999999999999873
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=4.4e-19 Score=166.63 Aligned_cols=288 Identities=11% Similarity=0.011 Sum_probs=195.5
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 010215 130 YEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLL 209 (515)
Q Consensus 130 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 209 (515)
.+.++.++..+...+...|++++|.++|+++...++.+...+..++..+...|++++|...++++.+.. +.+...+..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 344556677778888888888888888888887777666666666778888888888888888887753 3456777777
Q ss_pred HHHHHHcC-CHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCCh
Q 010215 210 LDTLCKEG-KVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNF 288 (515)
Q Consensus 210 l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 288 (515)
...+...| ++++|...|++.....+.+...|..+...+...|++++|...+++..+.. +.+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 88888888 78888888888665556667778888888888888888888888877653 23455666677777788888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CCCCHHHHHHHHHHHHhcCCHHH
Q 010215 289 SKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVG--------SKPDSRFFNCLIYTLGRASRVQE 360 (515)
Q Consensus 289 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~ 360 (515)
++|++.+++..+.. +.+..++..+...+...|++++|...++++.+.. .+....++..+...|.+.|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 88888888777653 3356677777777777777777777777766531 02234556666666666666666
Q ss_pred HHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHH
Q 010215 361 AVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSC 424 (515)
Q Consensus 361 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~ 424 (515)
|...++ ...+.. +.+...|..+...+...|++++|.+.|++..+.. +.+...+..+..++
T Consensus 255 A~~~~~-~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 255 ALDYHR-QALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR--RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHH-HHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC--SCCHHHHHHHHHHH
T ss_pred HHHHHH-HHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC--CCchHHHHHHHHHH
Confidence 666666 333321 1244556666666666666666666666665532 22344444444444
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=2.5e-18 Score=161.45 Aligned_cols=293 Identities=10% Similarity=0.019 Sum_probs=182.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHH
Q 010215 201 KNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQ 280 (515)
Q Consensus 201 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 280 (515)
.+...+..+...+...|++++|.++|+++....|.+...+..++..+.+.|++++|..+++++.+.. +.+...|..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 3444455556666666666666666666544445555566666666666666666666666665542 234556666666
Q ss_pred HHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 010215 281 SYCRQY-NFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQ 359 (515)
Q Consensus 281 ~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 359 (515)
.+...| ++++|++.|++..+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...|...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 666666 6666666666666543 2244556666666667777777777777666653 333455555666677777777
Q ss_pred HHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-------CCCCHHhHHHHHHHHHhcCChHH
Q 010215 360 EAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEH-------CKPNVQTFHPLLKSCFKTGKTDE 432 (515)
Q Consensus 360 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------~~p~~~~~~~ll~~~~~~g~~~~ 432 (515)
+|...++ ...+.. +.+...+..+...+...|++++|...++++.+... .+.+..++..+...+...|++++
T Consensus 177 ~A~~~~~-~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFS-QALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHH-HHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHH-HHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 7777776 443332 23456677777777777777777777777665210 02334567777777888888888
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH-HhcCCHH
Q 010215 433 CLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITP-RYQTCRLILDEV-KQKHMYD 503 (515)
Q Consensus 433 A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~-~~~g~~~ 503 (515)
|+ ..+++..+.. +.+...|..+...+.+.|++++|.+.+++..+ +.| +...+..+..++ ...|+.+
T Consensus 255 A~-~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 AL-DYHRQALVLI--PQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HH-HHHHHHHHHS--TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HH-HHHHHHHhhC--ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCchh
Confidence 87 7777777632 22456677778888888888888888887765 344 445555555555 3455543
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=1.9e-15 Score=150.11 Aligned_cols=337 Identities=12% Similarity=0.068 Sum_probs=216.4
Q ss_pred hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCC
Q 010215 112 DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGK----VRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSG----AGQ 183 (515)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~ 183 (515)
++.+.|...|..+... .++..+..|..+|.. .+++++|.+.|++..+.+ +..++..+...|.. .++
T Consensus 57 ~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~ 130 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--LPQAQQNLGVMYHEGNGVKVD 130 (490)
T ss_dssp CCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCC
Confidence 3666777777766432 245666677777766 677777777777766543 45555556666666 667
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc----cCChhH
Q 010215 184 WEDAVRTFDELGTFGLEKNTETMNLLLDTLCK----EGKVELARSVFLELKSCIPPNAHTFNIFIHGWCK----INRVDE 255 (515)
Q Consensus 184 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~ 255 (515)
+++|+++|++..+.| +...+..+...|.. .++.++|.+.|++.... .+...+..|...|.. .++.++
T Consensus 131 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~ 205 (490)
T 2xm6_A 131 KAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAI 205 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHH
Confidence 777777777776654 45566666666665 56777777777763321 356666667777766 677777
Q ss_pred HHHHHHHHHhCCCCccHhHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 010215 256 AQWTIQEMKGHGCHPCVISYSTIIQSYCR----QYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAK----SGDFEEAI 327 (515)
Q Consensus 256 A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~ 327 (515)
|..+|++..+.| +...+..+...|.. .+++++|+++|++..+.| +...+..+...|.. .++.++|.
T Consensus 206 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~ 279 (490)
T 2xm6_A 206 SAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKAL 279 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHH
Confidence 777777776654 45566666666664 667777777777766553 44555556666665 67777777
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCC---CHHHHHH
Q 010215 328 RITEKMKIVGSKPDSRFFNCLIYTLGRA-----SRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHG---HHEKAFH 399 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~ 399 (515)
+.|++..+.| +...+..+...|... +++++|...|+ ...+.+ +...+..+...|...| ++++|++
T Consensus 280 ~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~-~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~ 352 (490)
T 2xm6_A 280 EWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYT-KSAEQG---DATAQANLGAIYFRLGSEEEHKKAVE 352 (490)
T ss_dssp HHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH-HHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH-HHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHH
Confidence 7777766543 344555666666665 67777777776 444432 4455666666666555 6677777
Q ss_pred HHHHHHhCCCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 010215 400 VLEEMNKLEHCKPNVQTFHPLLKSCFK----TGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCR----ANKCEWAY 471 (515)
Q Consensus 400 ~~~~m~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~ 471 (515)
+|++..+.| +...+..+...|.. .+++++|+ ..+++..+ .+ +...+..+...|.+ .+++++|.
T Consensus 353 ~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~-~~~~~A~~-~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~ 423 (490)
T 2xm6_A 353 WFRKAAAKG----EKAAQFNLGNALLQGKGVKKDEQQAA-IWMRKAAE-QG---LSAAQVQLGEIYYYGLGVERDYVQAW 423 (490)
T ss_dssp HHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHH-HHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHH-HHHHHHHh-CC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 777776643 34556666666666 66777777 67777666 22 45566666666666 67777777
Q ss_pred HHHHHHHhCC
Q 010215 472 LLFKEMIGHD 481 (515)
Q Consensus 472 ~~~~~m~~~~ 481 (515)
++|++..+.+
T Consensus 424 ~~~~~A~~~~ 433 (490)
T 2xm6_A 424 AWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHCC
Confidence 7777776644
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=7.3e-19 Score=167.96 Aligned_cols=288 Identities=12% Similarity=0.046 Sum_probs=145.2
Q ss_pred cCCHHHHHH-HHHHHhhCCC-CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHH
Q 010215 181 AGQWEDAVR-TFDELGTFGL-EK--NTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEA 256 (515)
Q Consensus 181 ~g~~~~A~~-~~~~m~~~g~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 256 (515)
.|++++|++ .|++...... .| +...+..+...+...|++++|...|+++....|.+..++..+..++.+.|++++|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 355555555 5554433210 01 2233445555555666666666666554444455555566666666666666666
Q ss_pred HHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHhcC
Q 010215 257 QWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTT---------------VMSYLAKSG 321 (515)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~---------------li~~~~~~g 321 (515)
...|+++.+.. +.+..+|..+...+...|++++|++.++++...... +...+.. .+..+...|
T Consensus 118 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 118 ISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 66666555443 234555555666666666666666666665554211 1111110 122222556
Q ss_pred CHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 010215 322 DFEEAIRITEKMKIVGSKP-DSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHV 400 (515)
Q Consensus 322 ~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 400 (515)
++++|...++++.+..... +..++..+...|.+.|++++|...|+ ...... +.+...|..+...+...|++++|++.
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFT-AALSVR-PNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666665543111 35555666666666666666666665 333221 12345566666666666666666666
Q ss_pred HHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCC---------CCHHHHHHHHHHHHhcCCHHHHH
Q 010215 401 LEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLS---------LDITTYTLVIHGLCRANKCEWAY 471 (515)
Q Consensus 401 ~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---------p~~~~~~~li~~~~~~g~~~~A~ 471 (515)
|+++.+.. +.+...+..+...+.+.|++++|. ..+++..+..+-. .....|..+..++...|++++|.
T Consensus 274 ~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 274 YRRALELQ--PGYIRSRYNLGISCINLGAHREAV-EHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 66665532 334455555666666666666666 5555554421100 01345556666666666666665
Q ss_pred HHHH
Q 010215 472 LLFK 475 (515)
Q Consensus 472 ~~~~ 475 (515)
.+++
T Consensus 351 ~~~~ 354 (368)
T 1fch_A 351 AADA 354 (368)
T ss_dssp HHHT
T ss_pred HhHH
Confidence 5544
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=1e-18 Score=166.80 Aligned_cols=267 Identities=7% Similarity=-0.046 Sum_probs=192.1
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010215 236 NAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMS 315 (515)
Q Consensus 236 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 315 (515)
+...+..+...+.+.|++++|...|+++.+.. +.+..+|..+...|...|++++|++.|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44557777778888888888888888877653 3466777888888888888888888888877653 335677777888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCC-CCCCHHHHHHHH
Q 010215 316 YLAKSGDFEEAIRITEKMKIVGSK---------PDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENG-VAPDTSTFNTMI 385 (515)
Q Consensus 316 ~~~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~li 385 (515)
.|...|++++|.+.++++.+.... .....+..+...|.+.|++++|...|+ ...... ..++...+..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYL-EAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHH-HHHHHSCSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHH-HHHHhCcCccCHHHHHHHH
Confidence 888888888888888887764210 012233445778888899999999998 544432 112578888888
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 010215 386 TMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRAN 465 (515)
Q Consensus 386 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 465 (515)
..|...|++++|++.|+++.+.. +.+..++..+..++...|++++|+ ..+++..+.. +.+...|..+..+|.+.|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~--p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAV-EAYTRALEIQ--PGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHC--TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcC--CCchHHHHHHHHHHHHCC
Confidence 89999999999999999988854 456778888889999999999998 8888887732 224778888899999999
Q ss_pred CHHHHHHHHHHHHhCC---CC--------CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010215 466 KCEWAYLLFKEMIGHD---IT--------PRYQTCRLILDEVKQKHMYDAAEKIEA 510 (515)
Q Consensus 466 ~~~~A~~~~~~m~~~~---~~--------p~~~~~~~ll~~~~~~g~~~~a~~~~~ 510 (515)
++++|.+.++++.+.. .. .+..+|..+..++...|+.+.+.++.+
T Consensus 296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999887521 01 135678888888889999988887764
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=3.4e-15 Score=148.33 Aligned_cols=350 Identities=10% Similarity=0.012 Sum_probs=270.6
Q ss_pred CHHHHHHHHHHHHc----CCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHH
Q 010215 133 SSEIYEMMVDILGK----VRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSG----AGQWEDAVRTFDELGTFGLEKNTE 204 (515)
Q Consensus 133 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~ 204 (515)
++..+..+...|.. .+++++|...|+...+. .+..++..+...|.. .+++++|+++|++..+.| +..
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 112 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQ 112 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 66777777777777 78899999999888765 356677777888888 888999999998888754 667
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc----cCChhHHHHHHHHHHhCCCCccHhHHH
Q 010215 205 TMNLLLDTLCK----EGKVELARSVFLELKSCIPPNAHTFNIFIHGWCK----INRVDEAQWTIQEMKGHGCHPCVISYS 276 (515)
Q Consensus 205 ~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 276 (515)
.+..+...|.. .+++++|...|++.... .+...+..|...|.. .+++++|.+.|++..+.| +...+.
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 77778888887 78899999998884332 366778888888877 788899999998888865 677788
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 010215 277 TIIQSYCR----QYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAK----SGDFEEAIRITEKMKIVGSKPDSRFFNCL 348 (515)
Q Consensus 277 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 348 (515)
.+...|.. .+++++|+++|++..+.| +..++..+...|.. .+++++|.++|++..+.+ +...+..+
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~l 261 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRL 261 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 88888887 788899999998888765 56677777777776 788899999998888754 45566667
Q ss_pred HHHHHh----cCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHhCCCCCCCHHhHHH
Q 010215 349 IYTLGR----ASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHH-----GHHEKAFHVLEEMNKLEHCKPNVQTFHP 419 (515)
Q Consensus 349 i~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~p~~~~~~~ 419 (515)
...|.. .++.++|...|+ ...+. -+...+..+...|... +++++|+.+|++..+.| +...+..
T Consensus 262 g~~y~~g~~~~~d~~~A~~~~~-~a~~~---~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~----~~~a~~~ 333 (490)
T 2xm6_A 262 GYILEQGLAGAKEPLKALEWYR-KSAEQ---GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG----DATAQAN 333 (490)
T ss_dssp HHHHHHTTTSSCCHHHHHHHHH-HHHTT---TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT----CHHHHHH
T ss_pred HHHHHCCCCCCCCHHHHHHHHH-HHHHc---CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC----CHHHHHH
Confidence 777777 788999999998 55543 3566777777778776 88999999999888865 2345666
Q ss_pred HHHHHHhcC---ChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010215 420 LLKSCFKTG---KTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCR----ANKCEWAYLLFKEMIGHDITPRYQTCRLI 492 (515)
Q Consensus 420 ll~~~~~~g---~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 492 (515)
+...+...| +.++|+ +.+++..+ . .+...+..+...|.. .+++++|.+++++..+.| +...+..+
T Consensus 334 lg~~y~~~g~~~~~~~A~-~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~L 405 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAV-EWFRKAAA-K---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQL 405 (490)
T ss_dssp HHHHHHHSCCHHHHHHHH-HHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHH-HHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 666676656 778888 88888877 2 367778888888888 788999999999888754 46677777
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHh
Q 010215 493 LDEVKQ----KHMYDAAEKIEAVMKK 514 (515)
Q Consensus 493 l~~~~~----~g~~~~a~~~~~~m~~ 514 (515)
...+.. .+++++|.+.++...+
T Consensus 406 g~~y~~g~g~~~d~~~A~~~~~~A~~ 431 (490)
T 2xm6_A 406 GEIYYYGLGVERDYVQAWAWFDTAST 431 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 777776 7888999888877643
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=4.7e-18 Score=162.31 Aligned_cols=278 Identities=14% Similarity=0.025 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 010215 135 EIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLC 214 (515)
Q Consensus 135 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 214 (515)
..+..+...|.+.|++++|...|+++.+.++.+..++..+...+.+.|++++|++.|+++.+.. +.+..++..+...+.
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 143 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3455555556666666666666666655555555555555666666666666666666555543 334555555555566
Q ss_pred HcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHH
Q 010215 215 KEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYEL 294 (515)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 294 (515)
..|++++|...++++....+.+...+..+... .. .. . ....+.. +..+...|++++|++.
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-------~~-------~~----~-~~~~~~~-~~~~~~~~~~~~A~~~ 203 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEG-------AG-------GA----G-LGPSKRI-LGSLLSDSLFLEVKEL 203 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC----------------------------------CT-THHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH-------hh-------hh----c-ccHHHHH-HHHHhhcccHHHHHHH
Confidence 66666666666655433333333222211000 00 00 0 0000011 2222256666666666
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCC
Q 010215 295 LDEMQAQGCPP-NVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENG 373 (515)
Q Consensus 295 ~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 373 (515)
++++.+..... +..++..+...+...|++++|...++++.+.. +.+..++..+...|.+.|++++|...|+ ......
T Consensus 204 ~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~-~al~~~ 281 (368)
T 1fch_A 204 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYR-RALELQ 281 (368)
T ss_dssp HHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHC
T ss_pred HHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHhC
Confidence 66665542111 35566666666666666666666666666543 3445566666666666666666666666 333321
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC-----------HHhHHHHHHHHHhcCChHHHHHHHHH
Q 010215 374 VAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPN-----------VQTFHPLLKSCFKTGKTDECLSQLLD 439 (515)
Q Consensus 374 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-----------~~~~~~ll~~~~~~g~~~~A~~~~~~ 439 (515)
+.+...+..+...|.+.|++++|...|+++.+.. +.+ ..+|..+..++...|+.++|. .++.
T Consensus 282 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~ 354 (368)
T 1fch_A 282 -PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ--RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG-AADA 354 (368)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HTC------CCCCCHHHHHHHHHHHHHHTCGGGHH-HHHT
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCCCccccccchhhHHHHHHHHHHHHhCChHhHH-HhHH
Confidence 2345566666666666666666666666665532 111 456666667777777776665 4443
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=1.2e-15 Score=153.27 Aligned_cols=403 Identities=11% Similarity=0.058 Sum_probs=291.2
Q ss_pred CHHHHHHHHHHhh-hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 010215 99 SHYLVNKLIHRFK-DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRR 177 (515)
Q Consensus 99 ~~~~~~~ll~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~ 177 (515)
|...|..++.... ++.+.|..+++.+.. -+|.+...|..++..+.+.|++++|+.+|+++....+ +...+...+..
T Consensus 12 ~~~~w~~l~~~~~~~~~~~a~~~~e~al~--~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~ 88 (530)
T 2ooe_A 12 DLDAWSILIREAQNQPIDKARKTYERLVA--QFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSY 88 (530)
T ss_dssp CHHHHHHHHHHHHSSCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 5667877777543 589999999999974 3466889999999999999999999999999988776 66655444432
Q ss_pred -HHhcCCHHHHHH----HHHHHhhC-CCCC-CHHHHHHHHHHHHH---------cCCHHHHHHHHHHhhcCCCCC--hhh
Q 010215 178 -FSGAGQWEDAVR----TFDELGTF-GLEK-NTETMNLLLDTLCK---------EGKVELARSVFLELKSCIPPN--AHT 239 (515)
Q Consensus 178 -~~~~g~~~~A~~----~~~~m~~~-g~~~-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~--~~~ 239 (515)
....|+.++|.+ +|+..... |..| +...|...+....+ .|+++.|..+|++... .|.+ ...
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~ 167 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQL 167 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHH
Confidence 234577666654 77776543 5444 56778777776655 6889999999999554 3322 234
Q ss_pred HHHHHHHH-------------HccCChhHHHHHHHHHH------hCC---CCcc--------HhHHHHHHHHHHhc----
Q 010215 240 FNIFIHGW-------------CKINRVDEAQWTIQEMK------GHG---CHPC--------VISYSTIIQSYCRQ---- 285 (515)
Q Consensus 240 ~~~li~~~-------------~~~g~~~~A~~~~~~~~------~~~---~~~~--------~~~~~~li~~~~~~---- 285 (515)
|....... .+.++++.|..++.++. +.. ++|+ ...|...+......
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 43332211 13456777877776632 221 2343 24566655443322
Q ss_pred CCh----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhcCCCCCHHHHHH
Q 010215 286 YNF----SKVYELLDEMQAQGCPPNVVTYTTVMSYLAK-------SGDFE-------EAIRITEKMKIVGSKPDSRFFNC 347 (515)
Q Consensus 286 g~~----~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~ 347 (515)
++. +++..+|++.... .+-+...|...+..+.+ .|+++ +|.+++++..+.-.+.+...|..
T Consensus 248 ~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~ 326 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHH
Confidence 232 3778899988875 23467888888888775 69977 89999999986323556889999
Q ss_pred HHHHHHhcCCHHHHHHHHHhhchhCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHH-H
Q 010215 348 LIYTLGRASRVQEAVYVYQVEMPENGVAPD--TSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKS-C 424 (515)
Q Consensus 348 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~-~ 424 (515)
++..+.+.|++++|..+|+ ...+. .|+ ...|...+..+.+.|++++|.++|++..+.. +.+...|...... +
T Consensus 327 ~~~~~~~~g~~~~A~~~~~-~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYN-RLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEY 401 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHH-HHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHH-HHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchHHHHHHHHHHH
Confidence 9999999999999999999 66553 343 3589999999999999999999999999854 2223333332222 3
Q ss_pred HhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCC
Q 010215 425 FKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHD-ITPR--YQTCRLILDEVKQKHM 501 (515)
Q Consensus 425 ~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~g~ 501 (515)
...|+.++|. .+|+...+..+ .+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+
T Consensus 402 ~~~~~~~~A~-~~~e~al~~~p--~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~ 478 (530)
T 2ooe_A 402 YCSKDKSVAF-KIFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 478 (530)
T ss_dssp HHTCCHHHHH-HHHHHHHHHHT--TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC
T ss_pred HHcCChhHHH-HHHHHHHHHCC--CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 3689999999 99999988432 357889999999999999999999999999753 2332 4478888888888999
Q ss_pred HHHHHHHHHHHHh
Q 010215 502 YDAAEKIEAVMKK 514 (515)
Q Consensus 502 ~~~a~~~~~~m~~ 514 (515)
.+.+.++.+.+.+
T Consensus 479 ~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 479 LASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=1.8e-17 Score=155.38 Aligned_cols=265 Identities=9% Similarity=-0.022 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010215 134 SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTL 213 (515)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 213 (515)
...+..+...+.+.|++++|..+|+++.+.++.+..++..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 34456677778888888888888888887777777888888888888888888888888887753 44677788888888
Q ss_pred HHcCCHHHHHHHHHHhhcCCCCChhhHHHH--------------HH-HHHccCChhHHHHHHHHHHhCCCCccHhHHHHH
Q 010215 214 CKEGKVELARSVFLELKSCIPPNAHTFNIF--------------IH-GWCKINRVDEAQWTIQEMKGHGCHPCVISYSTI 278 (515)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 278 (515)
...|++++|.+.++++....+.+...+..+ .. .+...|++++|...++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 888888888888888555444444444444 22 2555566666666666655543 2245555566
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 010215 279 IQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRV 358 (515)
Q Consensus 279 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 358 (515)
...+...|++++|++.++++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+..++..+...|.+.|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccH
Confidence 666666666666666666655442 2234555555555566666666666666555543 33445555555555555555
Q ss_pred HHHHHHHHhhchhCCCCC-----------CHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 010215 359 QEAVYVYQVEMPENGVAP-----------DTSTFNTMITMFSHHGHHEKAFHVLEE 403 (515)
Q Consensus 359 ~~A~~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~ 403 (515)
++|...|+ ......... +...|..+..++.+.|++++|..++++
T Consensus 257 ~~A~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 257 DLAAKQLV-RAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHH-HHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHH-HHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 55555555 322211110 234555555555555555555555543
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=6.1e-18 Score=161.46 Aligned_cols=230 Identities=9% Similarity=-0.091 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010215 134 SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTL 213 (515)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 213 (515)
...+..+...+.+.|++++|...|+++...++.+..++..+...|.+.|++++|++.|+++.+.. +.+..++..+..+|
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34567777777778888888888888777777777777777777777888888888877777653 34567777777777
Q ss_pred HHcCCHHHHHHHHHHhhcCCCCChhh----------HHHHHHHHHccCChhHHHHHHHHHHhCCCC-ccHhHHHHHHHHH
Q 010215 214 CKEGKVELARSVFLELKSCIPPNAHT----------FNIFIHGWCKINRVDEAQWTIQEMKGHGCH-PCVISYSTIIQSY 282 (515)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~~~~~----------~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~ 282 (515)
...|++++|...|+++....+.+... +..+...+.+.|++++|...|+++.+.... ++..+|..+...|
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 77777777777777743322222222 223355666666666666666666554211 1355566666666
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010215 283 CRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAV 362 (515)
Q Consensus 283 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 362 (515)
...|++++|++.|++..+.. +.+..++..+..+|...|++++|...++++.+.. +.+..++..+...|.+.|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 66666666666666655542 2245555666666666666666666666655542 333555555555555666666665
Q ss_pred HHHH
Q 010215 363 YVYQ 366 (515)
Q Consensus 363 ~~~~ 366 (515)
..|+
T Consensus 302 ~~~~ 305 (365)
T 4eqf_A 302 SNFL 305 (365)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=5.4e-18 Score=159.15 Aligned_cols=347 Identities=10% Similarity=0.088 Sum_probs=150.2
Q ss_pred CHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010215 113 DWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFD 192 (515)
Q Consensus 113 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 192 (515)
+.++|.++++.+ +++.+|+.|+.++.+.|++++|++.|.+. .+..++..++..+...|++++|++.++
T Consensus 18 ~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 18 NLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 456677776655 23458888888888888888888888643 344456666777888888888888776
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccH
Q 010215 193 ELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCV 272 (515)
Q Consensus 193 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 272 (515)
..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------- 148 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------- 148 (449)
T ss_dssp -------------------------CHHHHTTTTT------CC----------------CTTTHHHHHHHT---------
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------
Confidence 66553 4556777788888888888888776663 366678888888888888888888888866
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 010215 273 ISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTL 352 (515)
Q Consensus 273 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 352 (515)
..|..++.++.+.|++++|++.++++ .++.+|..++.+|...|+++.|...... +...+.-...++..|
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Y 217 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYY 217 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHH
Confidence 25888888888888888888888877 2677888888888888888888544433 223333345677888
Q ss_pred HhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC------CHHhHHHHHHHHHh
Q 010215 353 GRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKP------NVQTFHPLLKSCFK 426 (515)
Q Consensus 353 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p------~~~~~~~ll~~~~~ 426 (515)
.+.|++++|..+++..+ ... +.....|+-+.-.|++- ++++..+-++.....=.++| +...|..+...|.+
T Consensus 218 ek~G~~eEai~lLe~aL-~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~ 294 (449)
T 1b89_A 218 QDRGYFEELITMLEAAL-GLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDK 294 (449)
T ss_dssp HHTTCHHHHHHHHHHHT-TST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHh-CCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888887333 222 33466777777777654 34443333333322110333 34557777777778
Q ss_pred cCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010215 427 TGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAE 506 (515)
Q Consensus 427 ~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 506 (515)
.++++.|+ . .|.+......+...|- +...+..+.+--.+...=.+ +..|.. .+-|+.++...=|...+.
T Consensus 295 ~~e~d~A~-~---tm~~h~~~a~~~~~f~---~~~~kv~n~elyYkai~fyl--~~~p~~--l~~ll~~l~~~ld~~r~v 363 (449)
T 1b89_A 295 YEEYDNAI-I---TMMNHPTDAWKEGQFK---DIITKVANVELYYRAIQFYL--EFKPLL--LNDLLMVLSPRLDHTRAV 363 (449)
T ss_dssp TTCHHHHH-H---HHHHSTTTTCCHHHHH---HHHHHCSSTHHHHHHHHHHH--HHCGGG--HHHHHHHHGGGCCHHHHH
T ss_pred hchHHHHH-H---HHHhCChhhhhhHHHH---HHHhchhHHHHHHHHHHHHH--hcCHHH--HHHHHHHHHhccCcHHHH
Confidence 88888766 2 4555222333444443 34455555554444433333 234444 667888887777888888
Q ss_pred HHHHHHH
Q 010215 507 KIEAVMK 513 (515)
Q Consensus 507 ~~~~~m~ 513 (515)
++++...
T Consensus 364 ~~~~~~~ 370 (449)
T 1b89_A 364 NYFSKVK 370 (449)
T ss_dssp HHHHHTT
T ss_pred HHHHHcC
Confidence 8877643
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=2.6e-16 Score=144.51 Aligned_cols=251 Identities=15% Similarity=0.162 Sum_probs=142.1
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCh
Q 010215 176 RRFSGAGQWEDAVRTFDELGTFGLEKN--TETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRV 253 (515)
Q Consensus 176 ~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 253 (515)
+-....|++..|+..++..... .|+ ......+.++|...|+++.|...++. ..+|+..++..+...+...|+.
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcH
Confidence 4444566666666666554432 232 22334455666666666666654322 2345555666666666666666
Q ss_pred hHHHHHHHHHHhCCCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010215 254 DEAQWTIQEMKGHGCHP-CVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEK 332 (515)
Q Consensus 254 ~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 332 (515)
++|.+.++++...+..| +...+..+...+...|++++|++.+++ +.+..++..++..+.+.|++++|.+.+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666666666554323 344455555666666666666666655 34555666666666666666666666666
Q ss_pred HHhcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 010215 333 MKIVGSKPDSRF---FNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEH 409 (515)
Q Consensus 333 ~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 409 (515)
+.+.. |+... ...++..+...|++++|..+|+ .+.+. .+.+...|+.+..++.+.|++++|.+.|++..+..
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~-~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~- 230 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQ-EMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD- 230 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHH-HHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHH-HHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 66543 33211 1122233334466666666666 44433 23455666666666666666666666666666643
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010215 410 CKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVN 443 (515)
Q Consensus 410 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 443 (515)
+-+..++..++..+...|+.+++..++++++.+
T Consensus 231 -p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 231 -SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp -TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 334556666666666666665533256666655
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=2e-16 Score=148.09 Aligned_cols=274 Identities=10% Similarity=0.042 Sum_probs=144.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCh
Q 010215 174 VMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRV 253 (515)
Q Consensus 174 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 253 (515)
+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|...++++....+.+..++..+...+...|++
T Consensus 27 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~ 105 (327)
T 3cv0_A 27 EGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 105 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCH
Confidence 3455555555555555555555432 224445555555555555555555555553333344445555555555555555
Q ss_pred hHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HH-HHHhcCCHHHHHHHHH
Q 010215 254 DEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTV-MS-YLAKSGDFEEAIRITE 331 (515)
Q Consensus 254 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-i~-~~~~~g~~~~a~~~~~ 331 (515)
++|...++++.+.. +.+...+..+... .|+......+ .. .+...|++++|.+.++
T Consensus 106 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 162 (327)
T 3cv0_A 106 NAALASLRAWLLSQ-PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRECRTLLH 162 (327)
T ss_dssp HHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHHHHHHH
Confidence 55555555554432 1111111111000 0000011111 11 2455566667777766
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 010215 332 KMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCK 411 (515)
Q Consensus 332 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 411 (515)
++.+.. +.+..++..+...|.+.|++++|...++ ...... +.+...|..+...+...|++++|.+.|+++.+.. +
T Consensus 163 ~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~-~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~ 237 (327)
T 3cv0_A 163 AALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLR-RAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN--P 237 (327)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred HHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHH-HHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C
Confidence 666553 3456666666666777777777777766 433321 2245666667777777777777777777766643 3
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCC----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010215 412 PNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLS----------LDITTYTLVIHGLCRANKCEWAYLLFKEM 477 (515)
Q Consensus 412 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~----------p~~~~~~~li~~~~~~g~~~~A~~~~~~m 477 (515)
.+...+..+...+...|++++|. ..+++..+..+-. .+...|..+..++.+.|++++|..++++.
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 238 GYVRVMYNMAVSYSNMSQYDLAA-KQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHhccHHHHH-HHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34566666667777777777777 6666665521110 02556667777777777777777766543
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=5.4e-15 Score=146.16 Aligned_cols=362 Identities=9% Similarity=-0.014 Sum_probs=218.2
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHhc---------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----
Q 010215 131 EHSSEIYEMMVDILGKVRQMDQMRALLEEMSK---------GHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTF---- 197 (515)
Q Consensus 131 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 197 (515)
+.....||.|...+...|++++|++.|++..+ .++....++..+...|...|++++|+..+++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 33456788888888888888888888877543 23455667777788888888888888888776431
Q ss_pred -C--CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHhhcCCCCChhhHHHHHHHH---HccCChhHHHHHHHHHHhCCCC
Q 010215 198 -G--LEKNTETMNLLLDTLCKE--GKVELARSVFLELKSCIPPNAHTFNIFIHGW---CKINRVDEAQWTIQEMKGHGCH 269 (515)
Q Consensus 198 -g--~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~~~~~~~~ 269 (515)
+ ......++.....++... +++++|+..|++.....|.+...+..+..++ ...++.++|++.+++..+.. +
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1 112345565555555544 4688888888885544556666666665553 34567778888888776653 3
Q ss_pred ccHhHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 010215 270 PCVISYSTIIQSYCR----QYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFF 345 (515)
Q Consensus 270 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 345 (515)
.+..++..+...+.. .+++++|.+.+++..... +.+..++..+...|...|++++|...+++..+.. +.+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 345555555544443 456778888888877653 3356777888888888888888888888887764 4456666
Q ss_pred HHHHHHHHhc-------------------CCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010215 346 NCLIYTLGRA-------------------SRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNK 406 (515)
Q Consensus 346 ~~li~~~~~~-------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 406 (515)
..+...|... +..+.|...++ ...+.. +.+...+..+...|...|++++|++.|++..+
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~-~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLK-KADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH-HHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHH-HHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 6665555321 23456666666 333321 22445677778888888888888888888877
Q ss_pred CCCCCCCHHh----HHHHHH-HHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010215 407 LEHCKPNVQT----FHPLLK-SCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHD 481 (515)
Q Consensus 407 ~~~~~p~~~~----~~~ll~-~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 481 (515)
.. |+... +..+.. .....|+.++|+ ..+++..+ +.|+...... ..+.+.+++++..+..
T Consensus 363 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ai-~~y~kal~---i~~~~~~~~~---------~~~~l~~~~~~~l~~~ 426 (472)
T 4g1t_A 363 KE---LTPVAKQLLHLRYGNFQLYQMKCEDKAI-HHFIEGVK---INQKSREKEK---------MKDKLQKIAKMRLSKN 426 (472)
T ss_dssp SC---CCHHHHHHHHHHHHHHHHHTSSCHHHHH-HHHHHHHH---SCCCCHHHHH---------HHHHHHHHHHHHHHHC
T ss_pred cC---CCChHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHh---cCcccHHHHH---------HHHHHHHHHHHHHHhC
Confidence 44 33221 222222 234678888888 77777766 3344322211 1233344444444322
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 482 ITPRYQTCRLILDEVKQKHMYDAAEKIEAVMKK 514 (515)
Q Consensus 482 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 514 (515)
+.+..+|..+...+...|++++|++.+++..+
T Consensus 427 -p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe 458 (472)
T 4g1t_A 427 -GADSEALHVLAFLQELNEKMQQADEDSERGLE 458 (472)
T ss_dssp -C-CTTHHHHHHHHHHHHHHCC-----------
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455677777777777777777777766543
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=9e-17 Score=150.94 Aligned_cols=328 Identities=9% Similarity=0.086 Sum_probs=120.0
Q ss_pred HHHHHHHHHHhh--hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 010215 100 HYLVNKLIHRFK--DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRR 177 (515)
Q Consensus 100 ~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~ 177 (515)
+..|..+..++. +++..|.+.|.+. +|+..|..+++.+...|++++|++.++...+ ...+..+...++.+
T Consensus 32 ~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark-~~~~~~i~~~Li~~ 103 (449)
T 1b89_A 32 PAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARK-KARESYVETELIFA 103 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-hCccchhHHHHHHH
Confidence 345555555554 3555666665432 3555666666666666666666665544433 22233344445666
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHH
Q 010215 178 FSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQ 257 (515)
Q Consensus 178 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 257 (515)
|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+ ..|..++.++.+.|++++|.
T Consensus 104 Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AV 168 (449)
T 1b89_A 104 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAV 168 (449)
T ss_dssp -----CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHH
T ss_pred HHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHH
Confidence 666666666665552 355556666666666666666666666655 24666666666666666666
Q ss_pred HHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010215 258 WTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVG 337 (515)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 337 (515)
+.++++. ++.+|..++.+|...|+++.|...... +..++.-...++..|.+.|.+++|..+++......
T Consensus 169 ea~~KA~------~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le 237 (449)
T 1b89_A 169 DGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE 237 (449)
T ss_dssp HHHHHHT------CHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST
T ss_pred HHHHHcC------CchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc
Confidence 6666651 556666666666666666666443332 11223334456666666666666666666665443
Q ss_pred CCCCHHHHHHHHHHHHhc--CCHHHHHHHHHhhchhCCCCC------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 010215 338 SKPDSRFFNCLIYTLGRA--SRVQEAVYVYQVEMPENGVAP------DTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEH 409 (515)
Q Consensus 338 ~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 409 (515)
+.....|+-|.-.|++- ++..+..+.|.. .-+++| +...|..+...|.+.++++.|... |.+.
T Consensus 238 -~ah~~~ftel~il~~ky~p~k~~ehl~~~~~---~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h-- 308 (449)
T 1b89_A 238 -RAHMGMFTELAILYSKFKPQKMREHLELFWS---RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH-- 308 (449)
T ss_dssp -TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST---TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHS--
T ss_pred -HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhC--
Confidence 34455555555555542 334444444431 112222 234566666666666666666553 2231
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010215 410 CKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEM 477 (515)
Q Consensus 410 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 477 (515)
+|+..--........+..+.+--. +...-... ..|. ..+-|+.++...=+...+.+++++.
T Consensus 309 -~~~a~~~~~f~~~~~kv~n~elyY-kai~fyl~---~~p~--~l~~ll~~l~~~ld~~r~v~~~~~~ 369 (449)
T 1b89_A 309 -PTDAWKEGQFKDIITKVANVELYY-RAIQFYLE---FKPL--LLNDLLMVLSPRLDHTRAVNYFSKV 369 (449)
T ss_dssp -TTTTCCHHHHHHHHHHCSSTHHHH-HHHHHHHH---HCGG--GHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred -ChhhhhhHHHHHHHhchhHHHHHH-HHHHHHHh---cCHH--HHHHHHHHHHhccCcHHHHHHHHHc
Confidence 233222222333334444433221 11111111 1222 2555555555555666666655544
No 30
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=2e-18 Score=174.73 Aligned_cols=117 Identities=15% Similarity=0.228 Sum_probs=61.0
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHh---CCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 010215 237 AHTFNIFIHGWCKINRVDEAQWTIQEMKG---HGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTV 313 (515)
Q Consensus 237 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 313 (515)
..+||+||++||+.|++++|.++|++|.+ .|+.||.+|||+||++|++.|++++|.++|++|.+.|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34455555555555555555555544432 244555555555555555555555555555555555555555555555
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 010215 314 MSYLAKSGD-FEEAIRITEKMKIVGSKPDSRFFNCLIYTLG 353 (515)
Q Consensus 314 i~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 353 (515)
|.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e 247 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence 555555554 2445555555555555555555555554433
No 31
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=7.5e-14 Score=140.05 Aligned_cols=404 Identities=8% Similarity=0.054 Sum_probs=280.6
Q ss_pred CCChhhHHHHHHHhcCCCCHHH--HHHHhhccccCCCCcCCHHHHHHHHHHhh--hCHHHHHHHHHHhccCCCCCCCHHH
Q 010215 61 SPRLPDIDVIISKVHVGSSEDE--VFQSLKQDHVCNAIQPSHYLVNKLIHRFK--DDWKSALGIFRWAGSCPGYEHSSEI 136 (515)
Q Consensus 61 ~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~ 136 (515)
+.++..|..++.....+....+ +|+++... .+-+...|...+..+. ++.+.|..+|+.+... .|++..
T Consensus 10 P~~~~~w~~l~~~~~~~~~~~a~~~~e~al~~-----~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---~p~~~l 81 (530)
T 2ooe_A 10 PYDLDAWSILIREAQNQPIDKARKTYERLVAQ-----FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---VLHIDL 81 (530)
T ss_dssp TTCHHHHHHHHHHHHSSCHHHHHHHHHHHHTT-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---CCCHHH
T ss_pred CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCChHH
Confidence 4578889988875444444332 67766542 2335566777776654 5899999999999643 357888
Q ss_pred HHHHHHHH-HcCCChHHHHH----HHHHHhc---CCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHhhCCC
Q 010215 137 YEMMVDIL-GKVRQMDQMRA----LLEEMSK---GHIVTLNTIAKVMRRFSG---------AGQWEDAVRTFDELGTFGL 199 (515)
Q Consensus 137 ~~~li~~~-~~~g~~~~A~~----~~~~~~~---~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~ 199 (515)
|...+... ...|+.+.|++ +|+.... .++.+...+...+....+ .|++++|..+|++..+...
T Consensus 82 w~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~ 161 (530)
T 2ooe_A 82 WKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM 161 (530)
T ss_dssp HHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchh
Confidence 88887644 45677777665 7776644 234455665555555544 6889999999999988321
Q ss_pred CCCHHHHHHHHHHH-------------HHcCCHHHHHHHHHHh-------hcC---CCCC--------hhhHHHHHHHHH
Q 010215 200 EKNTETMNLLLDTL-------------CKEGKVELARSVFLEL-------KSC---IPPN--------AHTFNIFIHGWC 248 (515)
Q Consensus 200 ~~~~~~~~~ll~~~-------------~~~~~~~~a~~~~~~~-------~~~---~~~~--------~~~~~~li~~~~ 248 (515)
.+....|....... ...+++..|..++..+ ... ++|+ ...|...+....
T Consensus 162 ~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~ 241 (530)
T 2ooe_A 162 INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEK 241 (530)
T ss_dssp TTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHH
Confidence 11123443322211 1234567777776652 111 3444 245655554433
Q ss_pred cc----CCh----hHHHHHHHHHHhCCCCccHhHHHHHHHHHHh-------cCChh-------HHHHHHHHHHHCCCCCC
Q 010215 249 KI----NRV----DEAQWTIQEMKGHGCHPCVISYSTIIQSYCR-------QYNFS-------KVYELLDEMQAQGCPPN 306 (515)
Q Consensus 249 ~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~~~ 306 (515)
.. ++. +.+..+|++..... +.+...|...+..+.+ .|+++ +|.++|++..+.-.+.+
T Consensus 242 ~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~ 320 (530)
T 2ooe_A 242 SNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN 320 (530)
T ss_dssp HCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC
T ss_pred cCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc
Confidence 22 233 36778898887752 4467888888888875 69987 89999999886323346
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHH
Q 010215 307 VVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDS-RFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMI 385 (515)
Q Consensus 307 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 385 (515)
...|..++..+.+.|++++|..+|+++.+.. +.+. .+|..++..+.+.|++++|..+|+ ...+.. +.+...|...+
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~-~Al~~~-~~~~~~~~~~a 397 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFK-KAREDA-RTRHHVYVTAA 397 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTCT-TCCTHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHH-HHHhcc-CCchHHHHHHH
Confidence 8889999999999999999999999999853 2233 588888998999999999999999 544432 11223333222
Q ss_pred H-HHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHH
Q 010215 386 T-MFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD--ITTYTLVIHGLC 462 (515)
Q Consensus 386 ~-~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~--~~~~~~li~~~~ 462 (515)
. .+...|+.++|..+|++..+.. +.+...+..++..+.+.|+.++|. .+|++........|+ ...|...+....
T Consensus 398 ~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar-~~~~~al~~~~~~~~~~~~lw~~~~~~e~ 474 (530)
T 2ooe_A 398 LMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTR-VLFERVLTSGSLPPEKSGEIWARFLAFES 474 (530)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHH-HHHHHHHHSCCSCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHH-HHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 2 2346899999999999998854 345788889999999999999998 999999985444443 558988899999
Q ss_pred hcCCHHHHHHHHHHHHh
Q 010215 463 RANKCEWAYLLFKEMIG 479 (515)
Q Consensus 463 ~~g~~~~A~~~~~~m~~ 479 (515)
..|+.+.+..+.+++.+
T Consensus 475 ~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 475 NIGDLASILKVEKRRFT 491 (530)
T ss_dssp HSSCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999999875
No 32
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.74 E-value=1.5e-13 Score=143.91 Aligned_cols=338 Identities=11% Similarity=0.085 Sum_probs=221.3
Q ss_pred hhCHHHHHHHHHHhccCCC-CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010215 111 KDDWKSALGIFRWAGSCPG-YEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVR 189 (515)
Q Consensus 111 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 189 (515)
.+.+.+++++++.+...+. +.-+....+.++....+. +..+..+..+.....+ . ..+...+...|.+++|..
T Consensus 998 aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~---~eIA~Iai~lglyEEAf~ 1070 (1630)
T 1xi4_A 998 ADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---A---PDIANIAISNELFEEAFA 1070 (1630)
T ss_pred CCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---H---HHHHHHHHhCCCHHHHHH
Confidence 3566666666666652221 223444555555444444 3344444444333111 1 113566777888888888
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCC
Q 010215 190 TFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCH 269 (515)
Q Consensus 190 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 269 (515)
+|++.. -.....+.++ -..+++++|.++.+++ .+..+|..+..++.+.|++++|.+.|.+.
T Consensus 1071 IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA------ 1131 (1630)
T 1xi4_A 1071 IFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------ 1131 (1630)
T ss_pred HHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------
Confidence 887752 1222223332 2667788888887765 34777888888888888888888888664
Q ss_pred ccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 010215 270 PCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLI 349 (515)
Q Consensus 270 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 349 (515)
-|...|..++.++.+.|++++|+++|....+.. ++....+.++.+|++.+++++...+. + .++...+..+.
T Consensus 1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVG 1202 (1630)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHH
Confidence 367778888888888888888888888777653 33333445888888888887544332 1 44556666788
Q ss_pred HHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCC
Q 010215 350 YTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGK 429 (515)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~ 429 (515)
..|...|++++|...|. . ...|..+..+|.+.|++++|.+.+++. .+..+|..+..+|...|+
T Consensus 1203 d~le~eg~YeeA~~~Y~-k---------A~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~E 1265 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYN-N---------VSNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKE 1265 (1630)
T ss_pred HHHHhcCCHHHHHHHHH-h---------hhHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhhH
Confidence 88888889999988888 3 247888888888888898888888875 334678888888888888
Q ss_pred hHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh--cCCHHHHH
Q 010215 430 TDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRY-QTCRLILDEVKQ--KHMYDAAE 506 (515)
Q Consensus 430 ~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~--~g~~~~a~ 506 (515)
+..|. ..... +..++..+..++..|.+.|.+++|+.+++..+. +.|.. ..|.-+...+.+ -++..++.
T Consensus 1266 f~LA~-~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A 1266 FRLAQ-MCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred HHHHH-HHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence 88876 44332 223566677888889999999999999987763 33332 234333333332 34444444
Q ss_pred HHH
Q 010215 507 KIE 509 (515)
Q Consensus 507 ~~~ 509 (515)
++|
T Consensus 1337 k~f 1339 (1630)
T 1xi4_A 1337 ELF 1339 (1630)
T ss_pred HHH
Confidence 444
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=2.3e-15 Score=138.17 Aligned_cols=276 Identities=10% Similarity=0.058 Sum_probs=215.0
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCCh
Q 010215 210 LDTLCKEGKVELARSVFLELKSCIPPN-AHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNF 288 (515)
Q Consensus 210 l~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 288 (515)
++-....|++..|+...+.+....|.+ ......+.++|...|++++|...++.. -+|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcH
Confidence 344567899999999988765432222 245567789999999999999877552 357888899999999999999
Q ss_pred hHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 010215 289 SKVYELLDEMQAQGCPP-NVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQV 367 (515)
Q Consensus 289 ~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 367 (515)
++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..|.+.|++++|...|+
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~- 154 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK- 154 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH-
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH-
Confidence 99999999998876545 466677777899999999999999987 5678899999999999999999999999
Q ss_pred hchhCCCCCCHHHH---HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHc
Q 010215 368 EMPENGVAPDTSTF---NTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNK 444 (515)
Q Consensus 368 ~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 444 (515)
.+.+.. |+.... ...+..+...|++++|+.+|+++.+.. +.+...++.+..++.+.|++++|. ..+++..+.
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~eA~-~~l~~al~~ 229 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTLLLLNGQAACHMAQGRWEAAE-GVLQEALDK 229 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHH
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHh
Confidence 666543 553211 223344455699999999999999864 677888999999999999999999 999998874
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010215 445 HHLSLDITTYTLVIHGLCRANKCEW-AYLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKI 508 (515)
Q Consensus 445 ~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 508 (515)
. +-+..++..++..+...|+.++ +.++++++.+ +.|+.... .....+.+.++++..-
T Consensus 230 ~--p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~~---~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 230 D--SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPFI---KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp C--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHH---HHHHHHHHHHHHHHHH
T ss_pred C--CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChHH---HHHHHHHHHHHHHHHH
Confidence 3 2367789999999999999976 5789999886 56765443 3334566666666543
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.73 E-value=1.2e-13 Score=144.53 Aligned_cols=353 Identities=11% Similarity=0.102 Sum_probs=270.0
Q ss_pred CCHHHHHHHHHHhhhCHHHHHHHHHHhcc-CCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCC---CCHHHHHH
Q 010215 98 PSHYLVNKLIHRFKDDWKSALGIFRWAGS-CPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHI---VTLNTIAK 173 (515)
Q Consensus 98 p~~~~~~~ll~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~ 173 (515)
-|...|..+|... ...-.++.+|... ...-..++.--...+..|...|.+.+|.++++++.-.+. .+.+.-+.
T Consensus 951 ~d~~lW~~vl~~~---n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~Lqnl 1027 (1630)
T 1xi4_A 951 KDPELWGSVLLES---NPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNL 1027 (1630)
T ss_pred cCHHHHHHHhcCC---cHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHH
Confidence 4677777777432 1223345555321 111144666778889999999999999999999984433 34455555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCh
Q 010215 174 VMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRV 253 (515)
Q Consensus 174 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 253 (515)
++.+..+. +..+..+...++... + ...+...+...|.+++|..+|++.. ......+.++. ..+++
T Consensus 1028 Li~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~----~~~~A~~VLie---~i~nl 1092 (1630)
T 1xi4_A 1028 LILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFEEAFAIFRKFD----VNTSAVQVLIE---HIGNL 1092 (1630)
T ss_pred HHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcC----CHHHHHHHHHH---HHhhH
Confidence 66666666 556666666665422 1 3447788899999999999999963 22233334433 77899
Q ss_pred hHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010215 254 DEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKM 333 (515)
Q Consensus 254 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 333 (515)
++|.++.++.. +..+|..+..++...|++++|++.|.+. -|...|..++.+|.+.|++++|.+.+...
T Consensus 1093 drAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mA 1160 (1630)
T 1xi4_A 1093 DRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMA 1160 (1630)
T ss_pred HHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998663 5778999999999999999999999664 37788999999999999999999999988
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC
Q 010215 334 KIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPN 413 (515)
Q Consensus 334 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~ 413 (515)
++.. +++...+.++.+|++.+++++.....+ .++...|..+...|...|++++|..+|...
T Consensus 1161 rk~~--~e~~Idt~LafaYAKl~rleele~fI~--------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------- 1221 (1630)
T 1xi4_A 1161 RKKA--RESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------- 1221 (1630)
T ss_pred Hhhc--ccccccHHHHHHHHhhcCHHHHHHHHh--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------
Confidence 8764 444444569999999999996444432 357778888999999999999999999985
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010215 414 VQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLIL 493 (515)
Q Consensus 414 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 493 (515)
..|..+...+.+.|++++|+ +.+++. .+..+|..+..+|...|++..|...... +..++..+..++
T Consensus 1222 -~ny~rLA~tLvkLge~q~AI-EaarKA-------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli 1287 (1630)
T 1xi4_A 1222 -SNFGRLASTLVHLGEYQAAV-DGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELI 1287 (1630)
T ss_pred -hHHHHHHHHHHHhCCHHHHH-HHHHHh-------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHH
Confidence 37999999999999999999 887765 3568999999999999999999887654 344566677899
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 010215 494 DEVKQKHMYDAAEKIEAVMK 513 (515)
Q Consensus 494 ~~~~~~g~~~~a~~~~~~m~ 513 (515)
..|.+.|.+++|+++++.-.
T Consensus 1288 ~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1288 NYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred HHHHHcCCHHHHHHHHHHHh
Confidence 99999999999999998764
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.72 E-value=8e-18 Score=170.35 Aligned_cols=138 Identities=9% Similarity=0.076 Sum_probs=112.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhch---hCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHH
Q 010215 339 KPDSRFFNCLIYTLGRASRVQEAVYVYQVEMP---ENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQ 415 (515)
Q Consensus 339 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 415 (515)
..-..+|++||++||+.|++++|..+|. .|. ..|+.||..|||+||.+|++.|++++|.++|++|.+.| +.||.+
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~-eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G-~~PDvv 201 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLV-VHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG-LTPDLL 201 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHH-HHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CCCCHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHH-HHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCcHH
Confidence 3445689999999999999999999997 654 45788999999999999999999999999999999998 999999
Q ss_pred hHHHHHHHHHhcCCh-HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 010215 416 TFHPLLKSCFKTGKT-DECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPR 485 (515)
Q Consensus 416 ~~~~ll~~~~~~g~~-~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 485 (515)
||+++|.++++.|+. ++|. ++|++|.+ .|+.||..+|++++.+..+. ..++.++++ ..++.|+
T Consensus 202 TYntLI~glcK~G~~~e~A~-~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIE-RCLEQMSQ-EGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHH-HHHHHHHH-HTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCC
T ss_pred HHHHHHHHHHhCCCcHHHHH-HHHHHHHH-cCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCC
Confidence 999999999999885 6777 89999988 79999999999888766664 344444444 3345554
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=4.4e-14 Score=139.61 Aligned_cols=361 Identities=14% Similarity=0.026 Sum_probs=235.8
Q ss_pred HhhhCHHHHHHHHHHhccC-------CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhc--------CCCCCHHHHHH
Q 010215 109 RFKDDWKSALGIFRWAGSC-------PGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSK--------GHIVTLNTIAK 173 (515)
Q Consensus 109 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~ 173 (515)
...|+.++|++.|..+... ...+....+|+.+..+|...|++++|...+++... .++....++..
T Consensus 62 ~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~ 141 (472)
T 4g1t_A 62 HLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCE 141 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHH
Confidence 3346888888888776321 12233567899999999999999999999988754 12345566665
Q ss_pred HHHHHHh--cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 010215 174 VMRRFSG--AGQWEDAVRTFDELGTFGLEKNTETMNLLLDT---LCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWC 248 (515)
Q Consensus 174 li~~~~~--~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 248 (515)
...++.. .+++++|++.|++..+.. +-++..+..+..+ +...++.++|++.+++.....|.+..++..+...+.
T Consensus 142 ~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~ 220 (472)
T 4g1t_A 142 EGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLH 220 (472)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHH
Confidence 5555554 457999999999998753 3356666555554 345677788888888855545667777777766555
Q ss_pred c----cCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----
Q 010215 249 K----INRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKS---- 320 (515)
Q Consensus 249 ~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~---- 320 (515)
. .|++++|.+.+++..... +.+..++..+...|...|++++|++.+++..+.. +-+..++..+...|...
T Consensus 221 ~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~ 298 (472)
T 4g1t_A 221 KMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQV 298 (472)
T ss_dssp HCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHh
Confidence 4 467889999999987764 4467789999999999999999999999998763 23566666666555322
Q ss_pred ---------------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCH--HHHHH
Q 010215 321 ---------------GDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDT--STFNT 383 (515)
Q Consensus 321 ---------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~ 383 (515)
+..+.|...+++..+.. +.+..++..+...|...|++++|...|+ ........+.. ..+..
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~-kaL~~~~~~~~~~~~~~~ 376 (472)
T 4g1t_A 299 MNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQ-KEFSKELTPVAKQLLHLR 376 (472)
T ss_dssp HHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHH-HHHHSCCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHH-HHHhcCCCChHHHHHHHH
Confidence 23567788888877754 4556678889999999999999999999 55544322221 12233
Q ss_pred HHH-HHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 010215 384 MIT-MFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLC 462 (515)
Q Consensus 384 li~-~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~ 462 (515)
+.. ...+.|++++|+..|.+..+ +.|+.......+ +.+. .+++...+.. +.+..+|..+...|.
T Consensus 377 ~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~-~~~~~~l~~~--p~~~~~~~~LG~~~~ 441 (472)
T 4g1t_A 377 YGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQ-KIAKMRLSKN--GADSEALHVLAFLQE 441 (472)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHH-HHHHHHHHHC--C-CTTHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHH-HHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 322 34578999999999999998 456643322222 2223 5555555532 235678999999999
Q ss_pred hcCCHHHHHHHHHHHHhCC-CCCCHHHH
Q 010215 463 RANKCEWAYLLFKEMIGHD-ITPRYQTC 489 (515)
Q Consensus 463 ~~g~~~~A~~~~~~m~~~~-~~p~~~~~ 489 (515)
..|++++|++.|++.++.+ ..|+..+|
T Consensus 442 ~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 442 LNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHCC----------------------
T ss_pred HcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 9999999999999998754 34555544
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.69 E-value=3e-15 Score=131.20 Aligned_cols=198 Identities=15% Similarity=0.049 Sum_probs=114.0
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 010215 131 EHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLL 210 (515)
Q Consensus 131 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 210 (515)
++++..+..+...+.+.|++++|...|++..+.++.+..++..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45666777778888888888888888888888888888888888888888888888888888877653 33566777777
Q ss_pred HHHHHc-----------CCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHH
Q 010215 211 DTLCKE-----------GKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTII 279 (515)
Q Consensus 211 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 279 (515)
.++... |++++|+..+++.....|.+...+..+...+...|++++|...|++..+.. .+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 777666 555555555555433334445555555555555555555555555554443 3444455555
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010215 280 QSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEK 332 (515)
Q Consensus 280 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 332 (515)
.+|...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55555555555555555544432 12344444444455555555555554444
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.8e-14 Score=128.44 Aligned_cols=220 Identities=13% Similarity=0.093 Sum_probs=98.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---CCCC----hhhHHHHH
Q 010215 172 AKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSC---IPPN----AHTFNIFI 244 (515)
Q Consensus 172 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~li 244 (515)
..+...+...|++++|++.|++..+.. .+...+..+..++...|++++|...+++.... ..++ ..++..+.
T Consensus 9 ~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 86 (258)
T 3uq3_A 9 KAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIG 86 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence 333444444555555555554444433 34444444444555555555555554442211 1111 34444455
Q ss_pred HHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 010215 245 HGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFE 324 (515)
Q Consensus 245 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 324 (515)
..+.+.|++++|...|++..... |+. ..+...|++++|++.++++.... +.+...+..+...+...|+++
T Consensus 87 ~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 87 NAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHH
Confidence 55555555555555555544431 221 12333444555555555544431 112334444444455555555
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010215 325 EAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEM 404 (515)
Q Consensus 325 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 404 (515)
+|.+.++++.+.. +.+..++..+...|.+.|++++|...|+ ...+.. +.+...|..+...+...|++++|.+.+++.
T Consensus 157 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~-~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 157 NAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCN-KAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555555554432 2334444445555555555555555554 222211 123444444555555555555555555554
Q ss_pred Hh
Q 010215 405 NK 406 (515)
Q Consensus 405 ~~ 406 (515)
.+
T Consensus 234 ~~ 235 (258)
T 3uq3_A 234 RT 235 (258)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=4.2e-14 Score=127.31 Aligned_cols=224 Identities=10% Similarity=0.028 Sum_probs=139.0
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCC----HHHHH
Q 010215 238 HTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGC--PPN----VVTYT 311 (515)
Q Consensus 238 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~----~~~~~ 311 (515)
..+..+...+...|++++|...|++..+.. .+...|..+...+...|++++|++.+++..+... .++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555555566666666666666655544 4555566666666666666666666665554211 111 35556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhC
Q 010215 312 TVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHH 391 (515)
Q Consensus 312 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 391 (515)
.+...+...|++++|.+.++++.+. .|+. ..+.+.|++++|...++ ...... +.+...+..+...+...
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAE-AEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHH-HHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHH-HHHHcC-cchHHHHHHHHHHHHHh
Confidence 6666666666666666666666654 2332 23445566777777776 444321 12345666677777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010215 392 GHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAY 471 (515)
Q Consensus 392 g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 471 (515)
|++++|++.|+++.+.. +.+...+..+...+...|++++|+ ..+++..+.. +.+...|..+...+.+.|++++|.
T Consensus 153 ~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAI-ADCNKAIEKD--PNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHhC--HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 77777777777777754 345667777777777778888877 7777776632 224666777777788888888888
Q ss_pred HHHHHHHh
Q 010215 472 LLFKEMIG 479 (515)
Q Consensus 472 ~~~~~m~~ 479 (515)
+.+++..+
T Consensus 228 ~~~~~a~~ 235 (258)
T 3uq3_A 228 ETLDAART 235 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87777764
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=2.1e-14 Score=125.80 Aligned_cols=195 Identities=13% Similarity=0.051 Sum_probs=108.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 010215 167 TLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHG 246 (515)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 246 (515)
+..++..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..+++.....|.+...+..+...
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA 82 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 33445555666666777777777776666543 33566666666666666777777776666544445566666666666
Q ss_pred HHcc-----------CChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010215 247 WCKI-----------NRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMS 315 (515)
Q Consensus 247 ~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 315 (515)
+.+. |++++|...|++..+.. +-+...|..+...+...|++++|++.|++..+.. .+...+..+..
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 6666 66666666666655542 2234555555556666666666666666655544 35555555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010215 316 YLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQ 366 (515)
Q Consensus 316 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 366 (515)
++...|++++|...+++..+.. +.+...+..+...+.+.|++++|...|+
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 6666666666666666655543 3344555555555555566665555554
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.65 E-value=1.4e-13 Score=125.20 Aligned_cols=247 Identities=9% Similarity=-0.004 Sum_probs=182.9
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHH
Q 010215 237 AHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPN--VVTYTTVM 314 (515)
Q Consensus 237 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li 314 (515)
...+......+...|++++|...|++..+.. +.+...|..+...+...|++++|++.+++..+.+..++ ..+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3445566777888888888888888887764 23455778888888888888888888888877432222 34477888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCH
Q 010215 315 SYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHH 394 (515)
Q Consensus 315 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 394 (515)
..+...|++++|.+.+++..+.. +.+..++..+...|...|++++|...|+ ...+. .+.+...|..+...+...+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~-~al~~-~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYME-KQIRP-TTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHG-GGCCS-SCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHH-HHhhc-CCCcHHHHHHHHHHHHHHHHH
Confidence 88888999999999998888764 4566788889999999999999999998 55444 233566777777334445699
Q ss_pred HHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCC---hHHHHHHHHHHHHHcCCCCCC------HHHHHHHHHHHHhcC
Q 010215 395 EKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGK---TDECLSQLLDDMVNKHHLSLD------ITTYTLVIHGLCRAN 465 (515)
Q Consensus 395 ~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g 465 (515)
++|++.|+++.+.. +.+...+..+...+...|+ +++|. ..+++..+...-.|+ ...|..+...|...|
T Consensus 159 ~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 159 VKADSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAK-PYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR 235 (272)
T ss_dssp HHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTH-HHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHH-HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcC
Confidence 99999999998854 3446777778888888888 77888 788887764333344 257788899999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCH-HHHHHH
Q 010215 466 KCEWAYLLFKEMIGHDITPRY-QTCRLI 492 (515)
Q Consensus 466 ~~~~A~~~~~~m~~~~~~p~~-~~~~~l 492 (515)
++++|.+.+++..+ +.|+. ..+..+
T Consensus 236 ~~~~A~~~~~~al~--~~p~~~~a~~~l 261 (272)
T 3u4t_A 236 DKVKADAAWKNILA--LDPTNKKAIDGL 261 (272)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHh--cCccHHHHHHHh
Confidence 99999999999987 44554 344433
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.64 E-value=1.4e-13 Score=123.68 Aligned_cols=201 Identities=11% Similarity=0.016 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010215 134 SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTL 213 (515)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 213 (515)
+..+..+...|...|++++|.+.|+++...++....++..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 56778888888899999999999998888777778888888888889999999999998887753 34677788888888
Q ss_pred HHcCCHHHHHHHHHHhhc--CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHH
Q 010215 214 CKEGKVELARSVFLELKS--CIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKV 291 (515)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 291 (515)
...|++++|.+.++++.. ..+.+...+..+...+.+.|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888554 344566778888888888888888888888877653 33567778888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010215 292 YELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVG 337 (515)
Q Consensus 292 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 337 (515)
.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+..
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 88888877653 3456677777778888888888888888887653
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.64 E-value=1.4e-13 Score=121.04 Aligned_cols=201 Identities=9% Similarity=-0.044 Sum_probs=121.8
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 010215 133 SSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDT 212 (515)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 212 (515)
++.++..+...+...|++++|.+.|+++.+.++.+..++..+...+...|++++|.+.|+++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 455666667777777777777777777766666666666666667777777777777777666542 3355566666666
Q ss_pred HHHc-CCHHHHHHHHHHhhc--CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChh
Q 010215 213 LCKE-GKVELARSVFLELKS--CIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFS 289 (515)
Q Consensus 213 ~~~~-~~~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 289 (515)
+... |++++|...++++.. ..+.+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 6666 666666666666443 223334556666666666666666666666655542 223555566666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 290 KVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKI 335 (515)
Q Consensus 290 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 335 (515)
+|.+.++++.+.....+...+..+...+...|+.+.+..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666666655542213444555555555566666666666665554
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.63 E-value=2.8e-14 Score=127.28 Aligned_cols=213 Identities=8% Similarity=-0.006 Sum_probs=156.8
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 010215 131 EHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLL 210 (515)
Q Consensus 131 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 210 (515)
...+..+..+...+.+.|++++|...|+++...++.+..++..+...+...|++++|++.|+++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 34566788888889999999999999999988888888888888999999999999999999988764 44778888888
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhH
Q 010215 211 DTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSK 290 (515)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 290 (515)
..+...|++++|.+.++++....+.+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 899999999999999988665567778888889999999999999999999887653 3467788888888889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 010215 291 VYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNC 347 (515)
Q Consensus 291 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 347 (515)
|++.++++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~ 232 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHA 232 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHH
Confidence 999998887753 3357788888888888899999998888888764 334444443
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=3.7e-14 Score=129.13 Aligned_cols=243 Identities=9% Similarity=-0.079 Sum_probs=135.4
Q ss_pred cCCHHHHHHHHHHHhhCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHH
Q 010215 181 AGQWEDAVRTFDELGTFGLE---KNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQ 257 (515)
Q Consensus 181 ~g~~~~A~~~~~~m~~~g~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 257 (515)
.|++++|++.|+++.+.... .+..++..+...+...|++++|...|++.....+.+..++..+...|...|++++|.
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 45566666666666554211 134455556666666666666666666644444555666666666666666666666
Q ss_pred HHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010215 258 WTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVG 337 (515)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 337 (515)
..|++..+.. +.+..+|..+...|...|++++|++.++++.+. .|+.......+..+...|++++|...+++.....
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 6666666542 224556666666666667777777766666654 2333333333344455566777777766655542
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCH
Q 010215 338 SKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVA---PDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNV 414 (515)
Q Consensus 338 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 414 (515)
+++...+ .++..+...++.++|...+. ........ .+...|..+...|...|++++|...|++..+. .|+.
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~ 248 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLK-ADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN---NVHN 248 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHH-HHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCTT
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHH-HHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---Cchh
Confidence 2232222 24555556666666666666 33221110 01355666677777777777777777777663 3422
Q ss_pred HhHHHHHHHHHhcCChHHHH
Q 010215 415 QTFHPLLKSCFKTGKTDECL 434 (515)
Q Consensus 415 ~~~~~ll~~~~~~g~~~~A~ 434 (515)
+.....++...|++++|+
T Consensus 249 --~~~~~~~~~~l~~~~~a~ 266 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQ 266 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC-
T ss_pred --HHHHHHHHHHHHHHHhhH
Confidence 112233455566666665
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.61 E-value=1.4e-13 Score=125.13 Aligned_cols=199 Identities=10% Similarity=-0.001 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--CHHHHHHHHHH
Q 010215 135 EIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEK--NTETMNLLLDT 212 (515)
Q Consensus 135 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~ll~~ 212 (515)
..+......+.+.|++++|...|+++.+.++.+..++..+...|...|++++|++.|++..+.+..+ ....|..+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3445556667777777777777777777666665566666677777777777777777776632111 12336666677
Q ss_pred HHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHH
Q 010215 213 LCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVY 292 (515)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 292 (515)
+...|++++|...|++.....+.+..++..+...|...|++++|...|++..+.. +.+...|..+...+...+++++|+
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776544445556666667777777777777777776666542 234455555552333344666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHh
Q 010215 293 ELLDEMQAQGCPPNVVTYTTVMSYLAKSGD---FEEAIRITEKMKI 335 (515)
Q Consensus 293 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~ 335 (515)
+.|++..+.. +.+...+..+...+...|+ +++|...++++.+
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 6666666542 2234555555555555555 5555555555443
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=1.2e-14 Score=132.44 Aligned_cols=246 Identities=11% Similarity=-0.031 Sum_probs=162.7
Q ss_pred cCCChHHHHHHHHHHhcCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 010215 146 KVRQMDQMRALLEEMSKGHI----VTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVEL 221 (515)
Q Consensus 146 ~~g~~~~A~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 221 (515)
..|++++|.+.|+++.+..+ ....++..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 45677777777777766432 245566667777777888888888887777653 3467777777778888888888
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 010215 222 ARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQ 301 (515)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 301 (515)
|...|++.....+.+..++..+...|.+.|++++|...|+++.+.. |+.......+..+...|++++|+..+++....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888877555556667778888888888888888888888877653 44444444555556678888888888776654
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCH
Q 010215 302 GCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSK---PDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDT 378 (515)
Q Consensus 302 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 378 (515)
. +++...+ .++..+...++.++|.+.+....+.... .+..++..+...|.+.|++++|...|+ ..... .|+.
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~-~al~~--~p~~ 248 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFK-LAVAN--NVHN 248 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHTT--CCTT
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHH-HHHhC--Cchh
Confidence 2 2233333 3566666777778888887777653211 114667778888888888888888888 55443 2322
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHH
Q 010215 379 STFNTMITMFSHHGHHEKAFHVL 401 (515)
Q Consensus 379 ~~~~~li~~~~~~g~~~~A~~~~ 401 (515)
+.....++...|++++|++.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 223344566677777777665
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.60 E-value=3e-12 Score=116.49 Aligned_cols=222 Identities=12% Similarity=0.040 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcCCCCChhhHHHHH
Q 010215 169 NTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCK----EGKVELARSVFLELKSCIPPNAHTFNIFI 244 (515)
Q Consensus 169 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li 244 (515)
.++..+...+...|++++|++.|++..+ +.+...+..+...|.. .+++++|...|++.... .+...+..+.
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg 81 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC--CCHHHHHHHH
Confidence 3333444444444555555555544444 1233344444444444 55555555555442211 1444445555
Q ss_pred HHHHc----cCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010215 245 HGWCK----INRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCR----QYNFSKVYELLDEMQAQGCPPNVVTYTTVMSY 316 (515)
Q Consensus 245 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 316 (515)
..|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +..++..+...
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 55555 555555555555555543 44455555555555 555566666655555543 34445555555
Q ss_pred HHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHH
Q 010215 317 LAK----SGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGR----ASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMF 388 (515)
Q Consensus 317 ~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 388 (515)
|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|+ ...+.+ +...+..+...|
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~-~a~~~~---~~~a~~~l~~~~ 228 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYS-KACELE---NGGGCFNLGAMQ 228 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHH-HHHHTT---CHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHH-HHHhCC---CHHHHHHHHHHH
Confidence 555 556666666666555542 34445555555555 566666666665 333321 244555555566
Q ss_pred Hh----CCCHHHHHHHHHHHHhCC
Q 010215 389 SH----HGHHEKAFHVLEEMNKLE 408 (515)
Q Consensus 389 ~~----~g~~~~A~~~~~~m~~~~ 408 (515)
.+ .+++++|++.|++..+.+
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HcCCCcccCHHHHHHHHHHHHHcC
Confidence 65 666666666666666644
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.60 E-value=3.9e-13 Score=118.14 Aligned_cols=198 Identities=12% Similarity=0.045 Sum_probs=82.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhc
Q 010215 206 MNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQ 285 (515)
Q Consensus 206 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 285 (515)
+..+...+...|++++|.+.+++.....+.+...+..+...+...|++++|...+++..+.. +.+..++..+...+...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 89 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGR 89 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHh
Confidence 33344444444444444444444322223334444444444444444444444444443321 12333444444444444
Q ss_pred -CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010215 286 -YNFSKVYELLDEMQAQGCPPN-VVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVY 363 (515)
Q Consensus 286 -g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 363 (515)
|++++|++.++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...|.+.|++++|..
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 168 (225)
T 2vq2_A 90 LNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADY 168 (225)
T ss_dssp TCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHH
Confidence 444444444444443111111 3334444444444444444444444444432 2234444444444444444444444
Q ss_pred HHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010215 364 VYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNK 406 (515)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 406 (515)
.++ .........+...+..+...+...|+.++|..+++.+.+
T Consensus 169 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 169 YFK-KYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHH-HHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHH-HHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 444 222211102333444444444445555555555544443
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.60 E-value=7.7e-13 Score=118.73 Aligned_cols=208 Identities=13% Similarity=0.017 Sum_probs=133.6
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 010215 272 VISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYT 351 (515)
Q Consensus 272 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 351 (515)
...|..+...+...|++++|++.++++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3455556666666666666666666665542 2245566666666666677777777766666553 3456666666777
Q ss_pred HHhcCCHHHHHHHHHhhchhCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCCh
Q 010215 352 LGRASRVQEAVYVYQVEMPENGVAP-DTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKT 430 (515)
Q Consensus 352 ~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~ 430 (515)
|...|++++|...++ .....+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++
T Consensus 115 ~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLL-EASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHTTCHHHHHHHHH-HHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhHHHHHHHHHH-HHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCH
Confidence 777777777777776 443322233 34566667777777777777777777777643 33466677777777777777
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010215 431 DECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTC 489 (515)
Q Consensus 431 ~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 489 (515)
++|. ..++++.+. .+.+...+..+...+...|++++|.+.++++.+ ..|+...+
T Consensus 192 ~~A~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~ 245 (252)
T 2ho1_A 192 VPAR-QYYDLFAQG--GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR--LYPGSLEY 245 (252)
T ss_dssp HHHH-HHHHHHHTT--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTSHHH
T ss_pred HHHH-HHHHHHHHh--CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCCHHH
Confidence 7777 777777652 123456667777777777888888777777765 34544433
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.60 E-value=3.5e-13 Score=127.90 Aligned_cols=231 Identities=7% Similarity=-0.001 Sum_probs=173.5
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 010215 133 SSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQ-WEDAVRTFDELGTFGLEKNTETMNLLLD 211 (515)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 211 (515)
+..+|..+...+.+.|++++|+..|+++...++.+..++..+...+...|+ +++|+..|++..+.. +-+...|..+..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 356677788888889999999999999998888888888888888888996 999999999888754 346778888888
Q ss_pred HHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHh-cCChhH
Q 010215 212 TLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCR-QYNFSK 290 (515)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~ 290 (515)
++...|++++|+..|+++....+.+..+|..+..++.+.|++++|+..|+++.+.. +-+...|+.+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 88888888888888888666667788888888888888888888888888888764 3367788888888888 555577
Q ss_pred H-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-------
Q 010215 291 V-----YELLDEMQAQGCPPNVVTYTTVMSYLAKSG--DFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRAS------- 356 (515)
Q Consensus 291 A-----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g------- 356 (515)
| ++.+++..... +-+...|..+...+...| ++++|.+.+.++ +. .+.+...+..+...|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccch
Confidence 7 46677766643 224566777776676666 567777777666 32 2445566666666666653
Q ss_pred --CHHHHHHHHHhhc
Q 010215 357 --RVQEAVYVYQVEM 369 (515)
Q Consensus 357 --~~~~A~~~~~~~~ 369 (515)
..++|..+|+ .+
T Consensus 331 ~~~~~~A~~~~~-~l 344 (382)
T 2h6f_A 331 EDILNKALELCE-IL 344 (382)
T ss_dssp HHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHH-HH
Confidence 2466666666 44
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.60 E-value=3.5e-12 Score=115.97 Aligned_cols=223 Identities=9% Similarity=-0.042 Sum_probs=123.9
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHH
Q 010215 236 NAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCR----QYNFSKVYELLDEMQAQGCPPNVVTYT 311 (515)
Q Consensus 236 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~ 311 (515)
+..++..+...|...|++++|...|++..+.+ +..++..+...|.. .+++++|++.|++..+.+ +..++.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 34445555555555555555555555555522 34445555555555 555555555555555543 445555
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhchhCCCCCCHHHHHH
Q 010215 312 TVMSYLAK----SGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGR----ASRVQEAVYVYQVEMPENGVAPDTSTFNT 383 (515)
Q Consensus 312 ~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 383 (515)
.+...|.. .+++++|.+.+++..+.+ +...+..+...|.. .+++++|...|+ ...+.+ +...+..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~-~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFT-KACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHH-HHHHTT---CHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHH-HHHhcC---cHHHHHH
Confidence 55555555 556666666665555543 44555555555555 566666666665 333322 3445555
Q ss_pred HHHHHHh----CCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHHHcCCCCCCHHHHH
Q 010215 384 MITMFSH----HGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFK----TGKTDECLSQLLDDMVNKHHLSLDITTYT 455 (515)
Q Consensus 384 li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~p~~~~~~ 455 (515)
+...|.. .+++++|++.|++..+.+ +...+..+...+.. .+++++|+ ..+++..+. + +...+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~-~~~~~a~~~-~---~~~a~~ 222 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNFKEAL-ARYSKACEL-E---NGGGCF 222 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCHHHHH-HHHHHHHHT-T---CHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCccHHHHH-HHHHHHHhC-C---CHHHHH
Confidence 5555555 566666666666665543 23445555555666 66666666 666666552 1 244555
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhC
Q 010215 456 LVIHGLCR----ANKCEWAYLLFKEMIGH 480 (515)
Q Consensus 456 ~li~~~~~----~g~~~~A~~~~~~m~~~ 480 (515)
.+...|.+ .|++++|.+.+++..+.
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 56666666 66666666666666653
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.59 E-value=5.2e-13 Score=126.71 Aligned_cols=234 Identities=9% Similarity=0.012 Sum_probs=187.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHhhcCCCCChhhHHHHHH
Q 010215 167 TLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGK-VELARSVFLELKSCIPPNAHTFNIFIH 245 (515)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~li~ 245 (515)
...++..+...+.+.|++++|++.|++..+.. +-+...|+.+..++...|+ +++|+..|++.....|.+..+|+.+..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 45566677888889999999999999998853 4467888999999999996 999999999976667788999999999
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHH
Q 010215 246 GWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAK-SGDFE 324 (515)
Q Consensus 246 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~ 324 (515)
++.+.|++++|+..|+++.+.. +-+...|..+..++.+.|++++|++.++++.+... -+..+|+.+..++.+ .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999998865 44778899999999999999999999999988743 367888888888888 56546
Q ss_pred HH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCC-----
Q 010215 325 EA-----IRITEKMKIVGSKPDSRFFNCLIYTLGRAS--RVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHG----- 392 (515)
Q Consensus 325 ~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----- 392 (515)
+| ++.+++.++.. +.+...|..+...+.+.| ++++|...+. .+ + ....+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~-~~-~-~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLL-DL-Q-PSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHH-HH-T-TTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHH-Hh-c-cCCCCHHHHHHHHHHHHHHhccccc
Confidence 66 47788877764 456778888888888777 5788888887 55 2 22345677778888887764
Q ss_pred ----CHHHHHHHHHHH-HhC
Q 010215 393 ----HHEKAFHVLEEM-NKL 407 (515)
Q Consensus 393 ----~~~~A~~~~~~m-~~~ 407 (515)
..++|+++|+++ .+.
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEK 348 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHh
Confidence 247888888888 663
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=2.9e-13 Score=120.65 Aligned_cols=196 Identities=13% Similarity=0.110 Sum_probs=86.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhc
Q 010215 206 MNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQ 285 (515)
Q Consensus 206 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 285 (515)
+..+...+...|++++|...|+++....+.+...+..+...+.+.|++++|...+++..+.. +.+...+..+...+...
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 104 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVK 104 (243)
T ss_dssp ----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHh
Confidence 33344444444444444444444333333444444444445555555555555554444332 22344444445555555
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010215 286 YNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVY 365 (515)
Q Consensus 286 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 365 (515)
|++++|++.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...|.+.|++++|...|
T Consensus 105 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 105 EMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp TCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555544432 2234444445555555555555555555554432 233444555555555555555555555
Q ss_pred HhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010215 366 QVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNK 406 (515)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 406 (515)
+ ...... +.+...+..+...|...|++++|.+.++++.+
T Consensus 183 ~-~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 183 A-AVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp H-HHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred H-HHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 5 322221 12344555555555555555555555555555
No 55
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.55 E-value=7.4e-13 Score=129.55 Aligned_cols=370 Identities=11% Similarity=0.029 Sum_probs=234.3
Q ss_pred hhCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCCh---HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-----
Q 010215 111 KDDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQM---DQMRALLEEMSKGHIVTLNTIAKVMRRFSGAG----- 182 (515)
Q Consensus 111 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g----- 182 (515)
.++++.|...|..+.. .| ++..+..|..+|...|+. ++|...|+...+. +..++..+...+...+
T Consensus 16 ~g~~~~A~~~~~~aa~-~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 16 RGDTVTAQQNYQQLAE-LG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHH-HT---CCTGGGTCC-------------------------------CHHHHHHHHHTC--CCHH
T ss_pred CCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCc
Confidence 3688999999999853 33 445667788888888888 8999999988765 4555555566555555
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-CCCChhhHHHHHHHHHccCChhHHHHHHH
Q 010215 183 QWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSC-IPPNAHTFNIFIHGWCKINRVDEAQWTIQ 261 (515)
Q Consensus 183 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 261 (515)
++++|+++|++..+.|. ++ .+..|...|...+..+.+.+.++.+... ...+...+..|...|...+.++++.....
T Consensus 89 ~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred CHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHH
Confidence 78899999999998763 33 6667777787766544433333332211 12346677888888888886666555533
Q ss_pred HHHhCCCCccHhHHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHH
Q 010215 262 EMKGHGCHPCVISYSTIIQSYCRQY---NFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKS----GDFEEAIRITEKMK 334 (515)
Q Consensus 262 ~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~~~ 334 (515)
.+.+.-...+...+..|...|...| +.++|++.|++..+.| .++...+..+...|... +++++|.+.|++..
T Consensus 166 ~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 166 RICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 3332211224448888999999999 8999999999999887 34666556677777554 69999999999987
Q ss_pred hcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHh
Q 010215 335 IVGSKPDSRFFNCLIYT-L--GRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHG-----HHEKAFHVLEEMNK 406 (515)
Q Consensus 335 ~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~ 406 (515)
. -+...+..|... | ...+++++|...|+ ...+.| +...+..+...|. .| ++++|+++|++..
T Consensus 245 -~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~-~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa- 314 (452)
T 3e4b_A 245 -P---GYPASWVSLAQLLYDFPELGDVEQMMKYLD-NGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV- 314 (452)
T ss_dssp -G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHH-HHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-
T ss_pred -C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-
Confidence 3 445566666666 4 46899999999999 666654 6777888888887 45 9999999999987
Q ss_pred CCCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 010215 407 LEHCKPNVQTFHPLLKSCFK----TGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCR----ANKCEWAYLLFKEMI 478 (515)
Q Consensus 407 ~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~ 478 (515)
.| +......|...|.. ..+.++|+ ..+++..+ .| +......|...|.. ..+.++|..+++...
T Consensus 315 ~g----~~~A~~~Lg~~y~~G~g~~~d~~~A~-~~~~~Aa~-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 315 GR----EVAADYYLGQIYRRGYLGKVYPQKAL-DHLLTAAR-NG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp TT----CHHHHHHHHHHHHTTTTSSCCHHHHH-HHHHHHHT-TT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred CC----CHHHHHHHHHHHHCCCCCCcCHHHHH-HHHHHHHh-hC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 44 34556666666655 34899999 89988877 44 33345566666654 468999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010215 479 GHDITPRYQTCRLILDEVKQKHMYDAAEKIEAV 511 (515)
Q Consensus 479 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 511 (515)
+.|. ++.......+......++.++|.++.+.
T Consensus 386 ~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~ 417 (452)
T 3e4b_A 386 AQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQ 417 (452)
T ss_dssp TTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8763 3332222222222233455666666554
No 56
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.55 E-value=6.4e-13 Score=129.99 Aligned_cols=331 Identities=9% Similarity=0.034 Sum_probs=192.7
Q ss_pred HHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCC-----ChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH---H
Q 010215 115 KSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVR-----QMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWE---D 186 (515)
Q Consensus 115 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---~ 186 (515)
.+|...|..+... ++..+..|..++...| ++++|...|++....+.+. ++..+...|...+..+ +
T Consensus 55 ~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~--A~~~Lg~~y~~~~~~~~~~~ 127 (452)
T 3e4b_A 55 KQAEATYRAAADT-----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN--TLIPLAMLYLQYPHSFPNVN 127 (452)
T ss_dssp ---------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS--CHHHHHHHHHHCGGGCTTCC
T ss_pred HHHHHHHHHHHhC-----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCCCCCCHH
Confidence 6777777776421 5556667776555544 6778888888877755544 4444566666655433 3
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHHHhhcCCCCChhhHHHHHHHHHccC---ChhHHHHH
Q 010215 187 AVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVE----LARSVFLELKSCIPPNAHTFNIFIHGWCKIN---RVDEAQWT 259 (515)
Q Consensus 187 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~----~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~ 259 (515)
+.+.+......| +......+...|...+.++ .+..++.....+ ++..+..|...|.+.| +.++|...
T Consensus 128 a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~---~~~a~~~Lg~~~~~~g~~~~~~~A~~~ 201 (452)
T 3e4b_A 128 AQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNT---TDICYVELATVYQKKQQPEQQAELLKQ 201 (452)
T ss_dssp HHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTT---CTTHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCcccHHHHHHH
Confidence 455555554444 3445555666777766443 344444433332 3337777888888888 78888888
Q ss_pred HHHHHhCCCCccHhHHHHHHHHHHhc----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHH
Q 010215 260 IQEMKGHGCHPCVISYSTIIQSYCRQ----YNFSKVYELLDEMQAQGCPPNVVTYTTVMSY-L--AKSGDFEEAIRITEK 332 (515)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~ 332 (515)
|++..+.| .++...+..+...|... +++++|+++|++.. .| +...+..+... + ...+++++|.+.|++
T Consensus 202 ~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~ 276 (452)
T 3e4b_A 202 MEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDN 276 (452)
T ss_dssp HHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHH
T ss_pred HHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 88888776 34555556666666554 67888888888776 32 44555666555 3 357788888888888
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHH
Q 010215 333 MKIVGSKPDSRFFNCLIYTLGRAS-----RVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSH----HGHHEKAFHVLEE 403 (515)
Q Consensus 333 ~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~ 403 (515)
..+.| +...+..|...|. .| ++++|...|+ ... .-+...+..+...|.. ..++++|..+|++
T Consensus 277 Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~-~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 347 (452)
T 3e4b_A 277 GRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFE-KAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLT 347 (452)
T ss_dssp HHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH-TTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH-HHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 87765 5666667777666 44 8888888887 443 2356667777766665 3378888888888
Q ss_pred HHhCCCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 404 MNKLEHCKPNVQTFHPLLKSCFK----TGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 404 m~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 479 (515)
..+.| .|+ ....|...|.. ..+.++|. ..++...+ .|. ++.......+......++.++|.++.++..+
T Consensus 348 Aa~~g--~~~--A~~~Lg~~y~~G~g~~~d~~~A~-~~~~~A~~-~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 348 AARNG--QNS--ADFAIAQLFSQGKGTKPDPLNAY-VFSQLAKA-QDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHTTT--CTT--HHHHHHHHHHSCTTBCCCHHHHH-HHHHHHHT-TCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHhhC--hHH--HHHHHHHHHHhCCCCCCCHHHHH-HHHHHHHH-CCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 87766 333 33444444443 34677777 77777766 342 2222222222222233455666666666543
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.55 E-value=2.2e-13 Score=131.94 Aligned_cols=278 Identities=13% Similarity=-0.006 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHhhcC------CCCCh
Q 010215 168 LNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNT----ETMNLLLDTLCKEGKVELARSVFLELKSC------IPPNA 237 (515)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~ 237 (515)
...+..+...+...|++++|+..|+++.+.+ +.+. ..+..+...|...|++++|...+++.... .+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 4445556677778888888888888877653 2233 35666777777777777777777763211 12234
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHhC----C-CCccHhHHHHHHHHHHhcCC-----------------hhHHHHHH
Q 010215 238 HTFNIFIHGWCKINRVDEAQWTIQEMKGH----G-CHPCVISYSTIIQSYCRQYN-----------------FSKVYELL 295 (515)
Q Consensus 238 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~ 295 (515)
.++..+...|...|++++|...+++..+. + .+....++..+...|...|+ +++|++.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 45566666666666666666666665432 0 01122345555555555555 44454444
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCC-
Q 010215 296 DEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGS-KPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENG- 373 (515)
Q Consensus 296 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~- 373 (515)
++..+.. . +.+. .....++..+...|...|++++|...++ ...+..
T Consensus 207 ~~al~~~----------------------------~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~-~al~~~~ 254 (411)
T 4a1s_A 207 QENLKLM----------------------------R---DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQ-ERLRIAR 254 (411)
T ss_dssp HHHHHHH----------------------------H---HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHH----------------------------H---HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH-HHHHHHH
Confidence 4432210 0 0000 0112244444555555555555555554 221100
Q ss_pred CCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC----CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcC
Q 010215 374 VAPD----TSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCK----PNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKH 445 (515)
Q Consensus 374 ~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 445 (515)
-.++ ...+..+...|...|++++|.+.+++..+..... ....++..+...+...|++++|. .++++..+..
T Consensus 255 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~ 333 (411)
T 4a1s_A 255 EFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAI-EYHNRHLAIA 333 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHH
Confidence 0011 2255666666777777777777776665421000 11345666667777777777777 6666665421
Q ss_pred CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 446 HLSLD----ITTYTLVIHGLCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 446 ~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 479 (515)
.-..+ ...+..+...|.+.|++++|.+.+++..+
T Consensus 334 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 334 QELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11111 34566677777788888888888777764
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.54 E-value=2.4e-13 Score=131.74 Aligned_cols=271 Identities=12% Similarity=0.014 Sum_probs=183.4
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC-CCCHHH
Q 010215 135 EIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTL----NTIAKVMRRFSGAGQWEDAVRTFDELGTF----GL-EKNTET 205 (515)
Q Consensus 135 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~ 205 (515)
..+..+...+...|++++|...|+++.+.++.+. .++..+...|...|++++|++.|++..+. +- .....+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 4455567788889999999999999887666554 46777888899999999999999887653 11 224567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcC------CCCChhhHHHHHHHHHccCC-----------------hhHHHHHHHH
Q 010215 206 MNLLLDTLCKEGKVELARSVFLELKSC------IPPNAHTFNIFIHGWCKINR-----------------VDEAQWTIQE 262 (515)
Q Consensus 206 ~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~ 262 (515)
+..+...|...|++++|...+++.... .+....++..+...|...|+ +++|...+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 788888999999999999999883321 22335578888999999999 8888888887
Q ss_pred HHhC----CC-CccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010215 263 MKGH----GC-HPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGC-PPN----VVTYTTVMSYLAKSGDFEEAIRITEK 332 (515)
Q Consensus 263 ~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~a~~~~~~ 332 (515)
..+. +- .....++..+...|...|++++|++.+++..+... .++ ..++..+...+...|++++|.+.+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 6542 11 11234677788888888998888888887765310 011 23666777777788888888888877
Q ss_pred HHhcCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhC----CC-CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 010215 333 MKIVGSK-----PDSRFFNCLIYTLGRASRVQEAVYVYQVEMPEN----GV-APDTSTFNTMITMFSHHGHHEKAFHVLE 402 (515)
Q Consensus 333 ~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~ 402 (515)
..+.... ....++..+...|...|++++|...++ ..... +. .....++..+...|...|++++|.+.++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~-~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHN-RHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 6543110 113455666666777777777777666 32211 00 0012355556666666666666666666
Q ss_pred HHHh
Q 010215 403 EMNK 406 (515)
Q Consensus 403 ~m~~ 406 (515)
+..+
T Consensus 368 ~al~ 371 (411)
T 4a1s_A 368 QHLQ 371 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.54 E-value=2.4e-13 Score=131.24 Aligned_cols=274 Identities=13% Similarity=0.026 Sum_probs=167.3
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-C
Q 010215 132 HSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTL----NTIAKVMRRFSGAGQWEDAVRTFDELGTF----GLEK-N 202 (515)
Q Consensus 132 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~ 202 (515)
.....+......+.+.|++++|...|+++...++.+. .++..+...+...|++++|+..|++.... +-.| .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 4556667777888888888888888888877665553 45666778888888888888888776432 1111 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC--CC----hhhHHHHHHHHHccCC--------------------hhHH
Q 010215 203 TETMNLLLDTLCKEGKVELARSVFLELKSCIP--PN----AHTFNIFIHGWCKINR--------------------VDEA 256 (515)
Q Consensus 203 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~----~~~~~~li~~~~~~g~--------------------~~~A 256 (515)
..++..+...+...|++++|...+++.....+ ++ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 44666777778888888888888776322100 11 3467777777777777 7777
Q ss_pred HHHHHHHHhC----CC-CccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHH
Q 010215 257 QWTIQEMKGH----GC-HPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGC-PPN----VVTYTTVMSYLAKSGDFEEA 326 (515)
Q Consensus 257 ~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~a 326 (515)
...+++.... +. +....++..+...|...|++++|++.+++..+... .++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 7777665431 11 11134566677777777777777777776654210 111 23566666677777777777
Q ss_pred HHHHHHHHhcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHhhchhC-CCCCC----HHHHHHHHHHHHhCCCHHH
Q 010215 327 IRITEKMKIVGS-KPD----SRFFNCLIYTLGRASRVQEAVYVYQVEMPEN-GVAPD----TSTFNTMITMFSHHGHHEK 396 (515)
Q Consensus 327 ~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~----~~~~~~li~~~~~~g~~~~ 396 (515)
...+++..+... ..+ ..++..+...|...|++++|...++ ..... .-..+ ..++..+...|...|++++
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~-~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHL-KHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 777766654210 011 3455566666666667666666665 32211 00011 3355556666666666666
Q ss_pred HHHHHHHHHh
Q 010215 397 AFHVLEEMNK 406 (515)
Q Consensus 397 A~~~~~~m~~ 406 (515)
|.+.+++..+
T Consensus 326 A~~~~~~al~ 335 (406)
T 3sf4_A 326 AMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666544
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.54 E-value=6.8e-13 Score=128.04 Aligned_cols=305 Identities=11% Similarity=-0.003 Sum_probs=158.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CC---CCC
Q 010215 167 TLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKN----TETMNLLLDTLCKEGKVELARSVFLELKS---CI---PPN 236 (515)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~---~~~ 236 (515)
....+......+...|++++|+..|++..+.+ +.+ ...+..+...+...|++++|...+++... .. +..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 34444555666677777777777777766642 222 23455666666666666666666665211 01 112
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHhCC----C-CccHhHHHHHHHHHHhcCC-------------hhHHHHHHHHH
Q 010215 237 AHTFNIFIHGWCKINRVDEAQWTIQEMKGHG----C-HPCVISYSTIIQSYCRQYN-------------FSKVYELLDEM 298 (515)
Q Consensus 237 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~-~~~~~~~~~li~~~~~~g~-------------~~~A~~~~~~m 298 (515)
..++..+...|...|++++|...+++..+.. - .....++..+...|...|+ ++++.+.
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~---- 162 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA---- 162 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH----
Confidence 3345555555556666666666555544320 0 0002244444445555555 0000000
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhC-
Q 010215 299 QAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIV----GS-KPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPEN- 372 (515)
Q Consensus 299 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~- 372 (515)
+++|.+.+.+..+. +. +....++..+...|...|++++|...++ ...+.
T Consensus 163 ------------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~-~al~~~ 217 (406)
T 3sf4_A 163 ------------------------LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHE-QRLLIA 217 (406)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHH-HHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHH-HHHHHH
Confidence 44444444433221 10 0112344555555666666666666655 22110
Q ss_pred CCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC----HHhHHHHHHHHHhcCChHHHHHHHHHHHHHc
Q 010215 373 GVAPD----TSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPN----VQTFHPLLKSCFKTGKTDECLSQLLDDMVNK 444 (515)
Q Consensus 373 ~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 444 (515)
.-.++ ...+..+...|...|++++|...+++..+.....++ ..++..+...+...|++++|. ..+++..+.
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~ 296 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI-DYHLKHLAI 296 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHH-HHHHHHHHH
Confidence 00111 235666677777777777777777776542100111 445667777777888888887 777766552
Q ss_pred CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCH
Q 010215 445 HHLSLD----ITTYTLVIHGLCRANKCEWAYLLFKEMIGH----DITP-RYQTCRLILDEVKQKHMY 502 (515)
Q Consensus 445 ~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~ 502 (515)
..-.++ ...+..+...|...|++++|.+.+++..+. +..+ ...++..+...+...|+.
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 211122 446667777888888888888888776542 2111 123444555555555544
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.53 E-value=1.6e-12 Score=110.59 Aligned_cols=167 Identities=11% Similarity=0.077 Sum_probs=138.2
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 010215 133 SSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDT 212 (515)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 212 (515)
++.+|..+...|.+.|++++|++.|++..+.+|.+..++..+...|.+.|++++|+..+....... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 677888899999999999999999999888888888888888889999999999999988887753 4466777777888
Q ss_pred HHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHH
Q 010215 213 LCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVY 292 (515)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 292 (515)
+...++++.+...+.+.....+.+...+..+...|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|+
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHH
Confidence 8888888888888888666667778888888888888888888888888887754 346677888888888888888888
Q ss_pred HHHHHHHHC
Q 010215 293 ELLDEMQAQ 301 (515)
Q Consensus 293 ~~~~~m~~~ 301 (515)
+.|++..+.
T Consensus 162 ~~~~~al~~ 170 (184)
T 3vtx_A 162 KYFKKALEK 170 (184)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhC
Confidence 888887764
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.53 E-value=3.9e-13 Score=125.90 Aligned_cols=163 Identities=10% Similarity=-0.024 Sum_probs=85.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CHHHHH
Q 010215 137 YEMMVDILGKVRQMDQMRALLEEMSKGHIVT----LNTIAKVMRRFSGAGQWEDAVRTFDELGTF----GLEK-NTETMN 207 (515)
Q Consensus 137 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~ 207 (515)
+......+...|++++|...|+++.+.++.+ ...+..+...+...|++++|++.+++..+. +..| ...++.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 3344556667777777777777776655444 345556666777777777777777665432 1111 234455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCC--CCC----hhhHHHHHHHHHccCC--------------------hhHHHHHHH
Q 010215 208 LLLDTLCKEGKVELARSVFLELKSCI--PPN----AHTFNIFIHGWCKINR--------------------VDEAQWTIQ 261 (515)
Q Consensus 208 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~ 261 (515)
.+...+...|++++|...+.+..... .++ ..++..+...|...|+ +++|...++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 56666666666666666666522110 011 2245555556666666 555555555
Q ss_pred HHHhC----CC-CccHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010215 262 EMKGH----GC-HPCVISYSTIIQSYCRQYNFSKVYELLDEMQ 299 (515)
Q Consensus 262 ~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 299 (515)
+.... +. .....++..+...+...|++++|++.+++..
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 210 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 210 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44321 00 0112244444555555555555555555443
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.52 E-value=6e-13 Score=124.64 Aligned_cols=134 Identities=10% Similarity=-0.018 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhchhC-CCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC----H
Q 010215 344 FFNCLIYTLGRASRVQEAVYVYQVEMPEN-GVAPD----TSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPN----V 414 (515)
Q Consensus 344 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~ 414 (515)
++..+...|...|++++|...++ ...+. ...++ ...+..+...+...|++++|.+.+++..+.....++ .
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~-~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHE-QRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH-HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 44445555555666666655555 22110 00011 225556666666677777777777666542100111 3
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 415 QTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD----ITTYTLVIHGLCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 415 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 479 (515)
.++..+...+...|++++|. ..+++..+...-..+ ...+..+...+.+.|++++|.+.+++..+
T Consensus 264 ~~~~~la~~~~~~g~~~~A~-~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAI-DYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHH-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 45556666667777777776 666665442111111 33555666677777777777777777664
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.47 E-value=4.8e-11 Score=110.49 Aligned_cols=183 Identities=10% Similarity=0.040 Sum_probs=100.1
Q ss_pred HHHHHHHHHhhcC-CCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCcc-Hh-HHHHHHHHHHhcCChhHHHHHHH
Q 010215 220 ELARSVFLELKSC-IPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPC-VI-SYSTIIQSYCRQYNFSKVYELLD 296 (515)
Q Consensus 220 ~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~-~~~~li~~~~~~g~~~~A~~~~~ 296 (515)
++|..+|++.... .|.+...|..++..+.+.|++++|..+|++..+. .|+ .. .|..++..+.+.|++++|.++|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 5555555554332 3334445555555555556666666666655553 232 22 55555666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhC-CC
Q 010215 297 EMQAQGCPPNVVTYTTVMSYLA-KSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPEN-GV 374 (515)
Q Consensus 297 ~m~~~g~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~ 374 (515)
+..+... ++...|........ ..|++++|.++|+...+.. +.+...|..++..+.+.|++++|..+|+ ..... ..
T Consensus 159 ~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~-~al~~~~l 235 (308)
T 2ond_A 159 KAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFE-RVLTSGSL 235 (308)
T ss_dssp HHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHH-HHHHSSSS
T ss_pred HHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHH-HHHhccCC
Confidence 6555421 22333332222211 2466666666666666542 3355666666666666667777776666 44332 12
Q ss_pred CC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010215 375 AP--DTSTFNTMITMFSHHGHHEKAFHVLEEMNKL 407 (515)
Q Consensus 375 ~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 407 (515)
.| ....|..++....+.|+.++|..+++++.+.
T Consensus 236 ~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33 3456666666666667777777777666663
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.46 E-value=1.4e-11 Score=118.08 Aligned_cols=231 Identities=6% Similarity=-0.007 Sum_probs=123.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CC-----CHHHHH
Q 010215 278 IIQSYCRQYNFSKVYELLDEMQAQ----GCPP-NVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGS-KP-----DSRFFN 346 (515)
Q Consensus 278 li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~-----~~~~~~ 346 (515)
....+...|++++|++.+++..+. +-.+ ...++..+...|...|+++.|...+.+..+... .+ ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344455566666666666665542 1111 124555566666666666666666666554210 01 123555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhchhCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCC-CCCHHhH
Q 010215 347 CLIYTLGRASRVQEAVYVYQVEMPENGVAPD----TSTFNTMITMFSHHGHHEKAFHVLEEMNKL----EHC-KPNVQTF 417 (515)
Q Consensus 347 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~p~~~~~ 417 (515)
.+...|...|++++|...|+..+....-.++ ..++..+...|...|++++|++.+++..+. + . +....++
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~ 267 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN-ILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CGGGHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc-cchhHHHHH
Confidence 5666666666666666666522211000011 135666666677777777777777666551 2 1 2224456
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHH
Q 010215 418 HPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD---ITTYTLVIHGLCRANK---CEWAYLLFKEMIGHDITPR-YQTCR 490 (515)
Q Consensus 418 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~-~~~~~ 490 (515)
..+...+.+.|++++|. ..+++..+......+ ...+..+...+...|+ +++|..++++. +..|+ ...+.
T Consensus 268 ~~l~~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~ 343 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAH-EYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAI 343 (383)
T ss_dssp HHHHHHHHHTTCHHHHH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHH
Confidence 66666677777777776 666665542111111 2224455566666666 55566555554 22332 23444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 010215 491 LILDEVKQKHMYDAAEKIEAVMK 513 (515)
Q Consensus 491 ~ll~~~~~~g~~~~a~~~~~~m~ 513 (515)
.+...+...|++++|.+.++...
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 55556677777777777776654
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.45 E-value=3.5e-12 Score=125.55 Aligned_cols=211 Identities=9% Similarity=-0.031 Sum_probs=135.4
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCCh-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010215 114 WKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQM-DQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFD 192 (515)
Q Consensus 114 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 192 (515)
.+.++..+..... ..+.+...+..+...|...|++ ++|++.|++..+.++....++..+...|.+.|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLG--SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHT--TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3445555554432 1234667777777777777777 777777777777677677777777777777777777777777
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcc--------CChhH
Q 010215 193 ELGTFGLEKNTETMNLLLDTLCKE---------GKVELARSVFLELKSCIPPNAHTFNIFIHGWCKI--------NRVDE 255 (515)
Q Consensus 193 ~m~~~g~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~ 255 (515)
+..+. .|+...+..+..++... |++++|+..|++.....+.+...|..+..+|... |++++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 77664 45566666677777776 7777777777765444555666677777766666 66677
Q ss_pred HHHHHHHHHhCCCC---ccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010215 256 AQWTIQEMKGHGCH---PCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRIT 330 (515)
Q Consensus 256 A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 330 (515)
|...|++..+.. + .+...|..+..+|...|++++|++.|++..+.. +.+..++..+...+...|++++|.+.+
T Consensus 240 A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 240 ALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777666666542 1 255566666666666666666666666666542 224455566666666666666665544
No 67
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.44 E-value=8.3e-12 Score=122.88 Aligned_cols=214 Identities=11% Similarity=-0.006 Sum_probs=170.8
Q ss_pred ChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010215 149 QMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQW-EDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFL 227 (515)
Q Consensus 149 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 227 (515)
.++++...+++.....+.....+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|.+.|+
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 367777888887777777888888888889999999 99999999888753 3467888888889999999999999998
Q ss_pred HhhcCCCCChhhHHHHHHHHHcc---------CChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhc--------CChhH
Q 010215 228 ELKSCIPPNAHTFNIFIHGWCKI---------NRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQ--------YNFSK 290 (515)
Q Consensus 228 ~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~ 290 (515)
+.... .|+...+..+...|... |++++|...|++..+.. +.+...|..+..+|... |++++
T Consensus 162 ~al~~-~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALTH-CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHTT-CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhh-CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 85443 35578888888888888 88899999998887764 34577888888888888 88888
Q ss_pred HHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010215 291 VYELLDEMQAQGCP--PNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQ 366 (515)
Q Consensus 291 A~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 366 (515)
|++.|++..+.... -+...+..+..+|...|++++|.+.|++..+.. +.+...+..+...+...|++++|...+.
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 98888888875210 367788888888888888888888888888764 4556677888888888888888887765
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.44 E-value=5.1e-11 Score=110.33 Aligned_cols=216 Identities=9% Similarity=0.055 Sum_probs=151.5
Q ss_pred HHHHHHHHhccCCCCCCCHHHHHHHHHHHH-------cCCCh-------HHHHHHHHHHhc-CCCCCHHHHHHHHHHHHh
Q 010215 116 SALGIFRWAGSCPGYEHSSEIYEMMVDILG-------KVRQM-------DQMRALLEEMSK-GHIVTLNTIAKVMRRFSG 180 (515)
Q Consensus 116 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~-~~~~~~~~~~~li~~~~~ 180 (515)
.|...|+.+... .+.++.+|..++..+. +.|++ ++|..+|++... .++.+...+..++..+.+
T Consensus 34 ~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 34 RVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 456666666532 2457778888887775 34775 788888888887 477777777777888888
Q ss_pred cCCHHHHHHHHHHHhhCCCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHH-ccCChhHHH
Q 010215 181 AGQWEDAVRTFDELGTFGLEK-NTE-TMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWC-KINRVDEAQ 257 (515)
Q Consensus 181 ~g~~~~A~~~~~~m~~~g~~~-~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~ 257 (515)
.|++++|.++|++..+. .| +.. .|..++..+.+.|++++|..+|++.....+.+...|...+.... ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888874 44 333 67778888888888888888888855544555555554443322 257888888
Q ss_pred HHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010215 258 WTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQG-CPP--NVVTYTTVMSYLAKSGDFEEAIRITEKMK 334 (515)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 334 (515)
.+|++..+.. +.+...|..++..+.+.|++++|..+|++..... +.| ....|..++....+.|+.+.|..+++++.
T Consensus 190 ~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888776542 3356677777777777788888888888777752 344 35567777777777788888887777776
Q ss_pred hc
Q 010215 335 IV 336 (515)
Q Consensus 335 ~~ 336 (515)
+.
T Consensus 269 ~~ 270 (308)
T 2ond_A 269 TA 270 (308)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 69
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.43 E-value=2.3e-09 Score=108.61 Aligned_cols=407 Identities=10% Similarity=0.070 Sum_probs=273.0
Q ss_pred cCCHHHHHHHHHHhh--hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCC---hHHHHHHHHHHhcCCC--CCHH
Q 010215 97 QPSHYLVNKLIHRFK--DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQ---MDQMRALLEEMSKGHI--VTLN 169 (515)
Q Consensus 97 ~p~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~--~~~~ 169 (515)
+-|..+|..++..+. +....+..+++.+.. -++.+...|...++.-.+.|+ ++.+..+|+......+ ++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~--~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHD--RFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 348899999999875 478889999999873 356788899999999999999 9999999999988663 5655
Q ss_pred HHHHHHHHHHhcCCH--------HHHHHHHHHHhh-CCC-CC-CHHHHHHHHHHHH---------HcCCHHHHHHHHHHh
Q 010215 170 TIAKVMRRFSGAGQW--------EDAVRTFDELGT-FGL-EK-NTETMNLLLDTLC---------KEGKVELARSVFLEL 229 (515)
Q Consensus 170 ~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~~-~~~~~~~ll~~~~---------~~~~~~~a~~~~~~~ 229 (515)
....-+....+.++. +...++|+.... .|. .+ +...|...+.... ..++++.+.++|++.
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 544334444344432 334578877654 465 55 4567777776544 234578889999885
Q ss_pred hcCCCCC--hhhHHHHHHHHHccC-------------ChhHHHHHHHHHHh--CCC----C-----------c-------
Q 010215 230 KSCIPPN--AHTFNIFIHGWCKIN-------------RVDEAQWTIQEMKG--HGC----H-----------P------- 270 (515)
Q Consensus 230 ~~~~~~~--~~~~~~li~~~~~~g-------------~~~~A~~~~~~~~~--~~~----~-----------~------- 270 (515)
.. +|.. ..+|......-...+ +++.|...+.++.. .++ + |
T Consensus 221 L~-iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~ 299 (679)
T 4e6h_A 221 LC-QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDV 299 (679)
T ss_dssp TT-SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCH
T ss_pred Hh-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHH
Confidence 53 3322 234433322221111 12234444444321 111 1 1
Q ss_pred -cHhHHHHHHHHHHhcC-------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhcCCCCC
Q 010215 271 -CVISYSTIIQSYCRQY-------NFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAI-RITEKMKIVGSKPD 341 (515)
Q Consensus 271 -~~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~~~~~~~~~~ 341 (515)
....|...+..--..+ ..+.+..+|++.... ++-+...|...+..+...|+.++|. ++++..... ++.+
T Consensus 300 ~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s 377 (679)
T 4e6h_A 300 QQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNS 377 (679)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTC
T ss_pred HHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCC
Confidence 0134555554433322 123456778887765 3446778888888888889999996 999999875 3567
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhchhCC---------CCCC------------HHHHHHHHHHHHhCCCHHHHHHH
Q 010215 342 SRFFNCLIYTLGRASRVQEAVYVYQVEMPENG---------VAPD------------TSTFNTMITMFSHHGHHEKAFHV 400 (515)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---------~~~~------------~~~~~~li~~~~~~g~~~~A~~~ 400 (515)
...+-..+...-+.|+++.|..+|+ ...... ..|+ ...|...+....+.|..+.|..+
T Consensus 378 ~~Lwl~~a~~ee~~~~~e~aR~iye-k~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~v 456 (679)
T 4e6h_A 378 AVLAFSLSEQYELNTKIPEIETTIL-SCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKI 456 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7778888888999999999999999 544321 0132 33688888888888999999999
Q ss_pred HHHHHhC-CCCCCCHHhHHHHHHHHHhc-CChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010215 401 LEEMNKL-EHCKPNVQTFHPLLKSCFKT-GKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMI 478 (515)
Q Consensus 401 ~~~m~~~-~~~~p~~~~~~~ll~~~~~~-g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 478 (515)
|.++.+. + .+....|......-.+. ++.+.|. .+|+...+.++ -+...|...++.....|+.+.|..+|++..
T Consensus 457 f~~A~~~~~--~~~~~lyi~~A~lE~~~~~d~e~Ar-~ife~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal 531 (679)
T 4e6h_A 457 FGKCRRLKK--LVTPDIYLENAYIEYHISKDTKTAC-KVLELGLKYFA--TDGEYINKYLDFLIYVNEESQVKSLFESSI 531 (679)
T ss_dssp HHHHHHTGG--GSCTHHHHHHHHHHHTTTSCCHHHH-HHHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHhcC--CCChHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHCC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999885 3 12233343333223344 4589998 99999998643 356678889999999999999999999998
Q ss_pred hCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 479 GHDITP--RYQTCRLILDEVKQKHMYDAAEKIEAVMKK 514 (515)
Q Consensus 479 ~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 514 (515)
.....+ ....|...+.--.+.|+.+.+.++.+++.+
T Consensus 532 ~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~ 569 (679)
T 4e6h_A 532 DKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE 569 (679)
T ss_dssp TTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 643222 234677777766889999999999998864
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.43 E-value=2.9e-11 Score=102.61 Aligned_cols=167 Identities=16% Similarity=0.105 Sum_probs=113.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 010215 167 TLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHG 246 (515)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 246 (515)
+...|..+...|.+.|++++|++.|++..+.. +-+..++..+..+|...|++++|...+.......+.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 45566667777777777777777777776643 33566677777777777777777777777555555666667777777
Q ss_pred HHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010215 247 WCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEA 326 (515)
Q Consensus 247 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 326 (515)
+...++++.|...+.+..... +.+...+..+...+.+.|++++|++.|++..+.. +.+..++..+..++.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 777777777777777766543 3345666677777777777777777777766653 23566677777777777777777
Q ss_pred HHHHHHHHhc
Q 010215 327 IRITEKMKIV 336 (515)
Q Consensus 327 ~~~~~~~~~~ 336 (515)
.+.|++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 7777776653
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.42 E-value=2.8e-11 Score=115.94 Aligned_cols=228 Identities=9% Similarity=-0.009 Sum_probs=108.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CCC----CChhhHH
Q 010215 174 VMRRFSGAGQWEDAVRTFDELGTF----GLEK-NTETMNLLLDTLCKEGKVELARSVFLELKS---CIP----PNAHTFN 241 (515)
Q Consensus 174 li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~----~~~~~~~ 241 (515)
....+...|++++|++.|++..+. +-.+ ...++..+...|...|+++.|...+.+... ..+ ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344555666666666666665442 1011 223455566666666666666666655221 111 1123455
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhC----CCC-ccHhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCCHHHHH
Q 010215 242 IFIHGWCKINRVDEAQWTIQEMKGH----GCH-PCVISYSTIIQSYCRQYNFSKVYELLDEMQAQ----GC-PPNVVTYT 311 (515)
Q Consensus 242 ~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~ 311 (515)
.+...|...|++++|...|++..+. +-. ....++..+...|...|++++|++.+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 5556666666666666666555432 100 01124555555666666666666666555441 11 22234455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHhhchhCCCCCC-HHHHHH
Q 010215 312 TVMSYLAKSGDFEEAIRITEKMKIVG----SKPDSRFFNCLIYTLGRASR---VQEAVYVYQVEMPENGVAPD-TSTFNT 383 (515)
Q Consensus 312 ~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~-~~~~~~ 383 (515)
.+...+.+.|++++|...+++..+.. -+.....+..+...|...|+ +++|..+++ ... ..|+ ...+..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~-~~~---~~~~~~~~~~~ 344 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLE-SKM---LYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHH-HTT---CHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HCc---CHHHHHHHHHH
Confidence 55555556666666666555554321 01111123334444445555 444444444 221 1111 223444
Q ss_pred HHHHHHhCCCHHHHHHHHHHHH
Q 010215 384 MITMFSHHGHHEKAFHVLEEMN 405 (515)
Q Consensus 384 li~~~~~~g~~~~A~~~~~~m~ 405 (515)
+...|...|++++|.+.+++..
T Consensus 345 la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 4455555555555555555443
No 72
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.39 E-value=3.9e-11 Score=101.59 Aligned_cols=164 Identities=14% Similarity=0.064 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 010215 135 EIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLC 214 (515)
Q Consensus 135 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 214 (515)
..+..+...+...|++++|.+.|+++...++.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3455556666666666666666666666555566666666666666666666666666665542 334555555666666
Q ss_pred HcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHH
Q 010215 215 KEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYEL 294 (515)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 294 (515)
..|++++|.+.++++....+.+...+..+...+.+.|++++|...+++..+.. +.+...+..+...+...|++++|.+.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666665444344455555555556666666666666665555432 22344555555555555555555555
Q ss_pred HHHHHH
Q 010215 295 LDEMQA 300 (515)
Q Consensus 295 ~~~m~~ 300 (515)
+++..+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.38 E-value=8.3e-12 Score=115.60 Aligned_cols=234 Identities=12% Similarity=0.055 Sum_probs=162.4
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHhc--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------
Q 010215 132 HSSEIYEMMVDILGKVRQMDQMRALLEEMSK--------GHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTF------ 197 (515)
Q Consensus 132 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------ 197 (515)
.+..++..+...|...|++++|..+|+++.+ ..+....++..+...|...|++++|++.|++..+.
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 3567788888999999999999999998876 34445667778889999999999999999888753
Q ss_pred CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc-------C-CCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC--
Q 010215 198 GL-EKNTETMNLLLDTLCKEGKVELARSVFLELKS-------C-IPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH-- 266 (515)
Q Consensus 198 g~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-- 266 (515)
+- +....++..+...+...|++++|...+++... . .+....++..+...+...|++++|...+++..+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 21 22456778888899999999999999988432 1 2334567888899999999999999999988664
Q ss_pred ----C-CCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCCHHH-------HHHHHHHHHhcCCHHHHH
Q 010215 267 ----G-CHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQ-------GCPPNVVT-------YTTVMSYLAKSGDFEEAI 327 (515)
Q Consensus 267 ----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~~~~~~-------~~~li~~~~~~g~~~~a~ 327 (515)
+ .+....++..+...|...|++++|++.++++.+. ...+.... +..+...+...+.+.++.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 264 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG 264 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 1 1223457888899999999999999999988753 11222111 222222333344455555
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010215 328 RITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQ 366 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 366 (515)
..+....... +....++..+...|.+.|++++|...|+
T Consensus 265 ~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 302 (311)
T 3nf1_A 265 GWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEE 302 (311)
T ss_dssp ---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5666555432 3456778889999999999999999998
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.37 E-value=1.2e-10 Score=111.25 Aligned_cols=229 Identities=7% Similarity=-0.007 Sum_probs=125.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----C-CCHHHHHH
Q 010215 279 IQSYCRQYNFSKVYELLDEMQAQGC-PPN----VVTYTTVMSYLAKSGDFEEAIRITEKMKIVGS-----K-PDSRFFNC 347 (515)
Q Consensus 279 i~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----~-~~~~~~~~ 347 (515)
...+...|++++|+..|++..+... .++ ..++..+...|...|+++.|...+.+..+... . ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3444566666777766666654210 111 34555566666666777776666666554210 0 11345556
Q ss_pred HHHHHHhcCCHHHHHHHHHhhchh---CCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-----CCCCCCCHHhHH
Q 010215 348 LIYTLGRASRVQEAVYVYQVEMPE---NGVAP-DTSTFNTMITMFSHHGHHEKAFHVLEEMNK-----LEHCKPNVQTFH 418 (515)
Q Consensus 348 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~p~~~~~~ 418 (515)
+...|...|++++|...|+..+.. .+..+ ...+++.+...|...|++++|++.+++..+ .. +....++.
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~ 265 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP--DLLPKVLF 265 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG--GGHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC--hhHHHHHH
Confidence 666666777777776666522211 11001 123556666667777777777777776665 22 22245566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCH-HHHHH
Q 010215 419 PLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD---ITTYTLVIHGLCRANK---CEWAYLLFKEMIGHDITPRY-QTCRL 491 (515)
Q Consensus 419 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~-~~~~~ 491 (515)
.+...+.+.|++++|. ..+++..+......+ ...+..+...+...|+ +++|+..+++. +..|+. ..+..
T Consensus 266 ~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 341 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAF-QFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHTTCHHHHH-HHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHH
Confidence 6666777777777777 666666653322111 2334445555555666 56666665552 222322 23444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 010215 492 ILDEVKQKHMYDAAEKIEAVMK 513 (515)
Q Consensus 492 ll~~~~~~g~~~~a~~~~~~m~ 513 (515)
+...+...|++++|.+.++...
T Consensus 342 la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 5556677777777777776654
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.36 E-value=2e-11 Score=112.95 Aligned_cols=241 Identities=12% Similarity=0.124 Sum_probs=169.9
Q ss_pred ccHhHHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------
Q 010215 270 PCVISYSTIIQSYCRQYNFSKVYELLDEMQAQ-------GCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIV------ 336 (515)
Q Consensus 270 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------ 336 (515)
.+..++..+...+...|++++|+.+++++.+. .......++..+...+...|++++|...++++.+.
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 34677899999999999999999999998873 22334567888899999999999999999998764
Q ss_pred CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhC------CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC-
Q 010215 337 GS-KPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPEN------GVAP-DTSTFNTMITMFSHHGHHEKAFHVLEEMNKL- 407 (515)
Q Consensus 337 ~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 407 (515)
+- +....++..+...|...|++++|...++ ...+. +..| ....+..+...+...|++++|+++++++.+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCK-RALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH-HHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHH-HHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 21 2335678888999999999999999998 54432 2222 3457888899999999999999999999874
Q ss_pred -----CCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHHHcC------CCCCC-------HHHHHHHHHHHHhcCCHH
Q 010215 408 -----EHCKPN-VQTFHPLLKSCFKTGKTDECLSQLLDDMVNKH------HLSLD-------ITTYTLVIHGLCRANKCE 468 (515)
Q Consensus 408 -----~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~------~~~p~-------~~~~~~li~~~~~~g~~~ 468 (515)
+ ..|+ ..++..+...+...|++++|. ..++++.+.. ...+. ...+..+...+...+.+.
T Consensus 184 ~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (311)
T 3nf1_A 184 QTKLGP-DDPNVAKTKNNLASCYLKQGKFKQAE-TLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFG 261 (311)
T ss_dssp HHTSCT-TCHHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSC
T ss_pred HHHhCC-CCHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHH
Confidence 2 1333 456788889999999999999 8999887621 11111 122233334445556677
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 469 WAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMKK 514 (515)
Q Consensus 469 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 514 (515)
+|...+++.... .+.+..++..+...+...|++++|.+.++...+
T Consensus 262 ~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 262 EYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777777777542 123455777888889999999999999988764
No 76
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.34 E-value=3.6e-11 Score=123.22 Aligned_cols=168 Identities=9% Similarity=0.054 Sum_probs=151.1
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 010215 131 EHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLL 210 (515)
Q Consensus 131 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 210 (515)
+.++.+++.|...|.+.|++++|++.|++..+.++....++..+...|.+.|++++|++.|++..+.. +-+...|..+.
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999998853 34688999999
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhH
Q 010215 211 DTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSK 290 (515)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 290 (515)
.+|...|++++|++.|++..+..+.+..+|+.+..+|.+.|++++|+..|++..+.. +-+...|..+..++...|++++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999999665567789999999999999999999999999998864 3357889999999999999999
Q ss_pred HHHHHHHHHH
Q 010215 291 VYELLDEMQA 300 (515)
Q Consensus 291 A~~~~~~m~~ 300 (515)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887764
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.33 E-value=1.4e-09 Score=103.54 Aligned_cols=266 Identities=11% Similarity=0.020 Sum_probs=153.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHhhcC--CCCC----hhhHHHHHH
Q 010215 176 RRFSGAGQWEDAVRTFDELGTFGLEKNTE----TMNLLLDTLCKEGKVELARSVFLELKSC--IPPN----AHTFNIFIH 245 (515)
Q Consensus 176 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~li~ 245 (515)
..+...|++++|...+++........+.. .+..+...+...|++++|...+++.... ...+ ..++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34445566666666666555432111221 3344455556666666666666652210 0111 123455666
Q ss_pred HHHccCChhHHHHHHHHHHhC----CCC--c-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--C--CHHHHHHHH
Q 010215 246 GWCKINRVDEAQWTIQEMKGH----GCH--P-CVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCP--P--NVVTYTTVM 314 (515)
Q Consensus 246 ~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~--~~~~~~~li 314 (515)
.+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++....... + ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 677777777777777665432 211 2 2344556667777778888888887776653211 1 234566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHhhchhCCCCC---CHHHHHHHH
Q 010215 315 SYLAKSGDFEEAIRITEKMKIVGSKPD--SRFFN----CLIYTLGRASRVQEAVYVYQVEMPENGVAP---DTSTFNTMI 385 (515)
Q Consensus 315 ~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~li 385 (515)
..+...|++++|...+++..+....++ ..... ..+..+...|++++|...++ ........+ ....+..+.
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~-~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLR-HTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHH-hCCCCCCCcchhhHHHHHHHH
Confidence 777788888888888887765311111 11111 23344667888888888887 544322111 123456677
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCC---CCCCH-HhHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010215 386 TMFSHHGHHEKAFHVLEEMNKLEH---CKPNV-QTFHPLLKSCFKTGKTDECLSQLLDDMVN 443 (515)
Q Consensus 386 ~~~~~~g~~~~A~~~~~~m~~~~~---~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 443 (515)
..+...|++++|...+++...... ..++. ..+..+..++...|+.++|. ..+++...
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~l~~al~ 321 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQ-RVLLDALK 321 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHH
Confidence 788888888888888887754210 11222 24555667777888888888 77777655
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.32 E-value=2.2e-10 Score=96.83 Aligned_cols=162 Identities=12% Similarity=0.049 Sum_probs=90.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcc
Q 010215 171 IAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKI 250 (515)
Q Consensus 171 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 250 (515)
+..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|...+++.....+.+..++..+...+...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 3444555666666666666666655432 234555555666666666666666666654433444555555566666666
Q ss_pred CChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010215 251 NRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRIT 330 (515)
Q Consensus 251 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 330 (515)
|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+..++..+...+...|++++|.+.+
T Consensus 90 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666666555432 2344555555555555666666666665555442 223455555555555555555555555
Q ss_pred HHHHh
Q 010215 331 EKMKI 335 (515)
Q Consensus 331 ~~~~~ 335 (515)
+++.+
T Consensus 168 ~~~~~ 172 (186)
T 3as5_A 168 KKANE 172 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.31 E-value=1.9e-09 Score=102.67 Aligned_cols=293 Identities=11% Similarity=0.022 Sum_probs=202.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCh-----hhHHHHHHHHHccCChhHHHHHHHHHHhC----CCC-ccHhHHH
Q 010215 207 NLLLDTLCKEGKVELARSVFLELKSCIPPNA-----HTFNIFIHGWCKINRVDEAQWTIQEMKGH----GCH-PCVISYS 276 (515)
Q Consensus 207 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~ 276 (515)
......+...|++++|...+++.....+++. .+++.+...+...|++++|...+++.... |.. ....++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 3445567788999999999998544333332 25677778889999999999999987642 211 0123456
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCHHHH
Q 010215 277 TIIQSYCRQYNFSKVYELLDEMQAQ----GCP--P-NVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSK----PDSRFF 345 (515)
Q Consensus 277 ~li~~~~~~g~~~~A~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~ 345 (515)
.+...+...|++++|.+.+++..+. +.. | ...++..+...+...|++++|...+++..+.... ....++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 7788899999999999999987652 222 2 2345667788899999999999999998764321 124567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhchhCCCCC-CHHHHH-----HHHHHHHhCCCHHHHHHHHHHHHhCCCCCC---CHHh
Q 010215 346 NCLIYTLGRASRVQEAVYVYQVEMPENGVAP-DTSTFN-----TMITMFSHHGHHEKAFHVLEEMNKLEHCKP---NVQT 416 (515)
Q Consensus 346 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~~p---~~~~ 416 (515)
..+...+...|++++|...++ ........+ +...+. ..+..+...|++++|..++++..... ..+ ....
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~ 255 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLN-RLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE-FANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHH-HHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC-CTTCGGGHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHH-HHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCC-CCcchhhHHH
Confidence 788888999999999999998 443221111 111222 23344778999999999999987643 111 1234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHc---CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC----C
Q 010215 417 FHPLLKSCFKTGKTDECLSQLLDDMVNK---HHLSLDI-TTYTLVIHGLCRANKCEWAYLLFKEMIGH----DIT----P 484 (515)
Q Consensus 417 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~----p 484 (515)
+..+...+...|++++|. ..+++.... .+..++. ..+..+..++...|+.++|...+++.... |.. .
T Consensus 256 ~~~la~~~~~~g~~~~A~-~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~~~ 334 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAE-IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVI 334 (373)
T ss_dssp HHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHT
T ss_pred HHHHHHHHHHcCCHHHHH-HHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 667778899999999999 888877552 2222222 35667788899999999999999887642 211 1
Q ss_pred CHHHHHHHHHHHHhcCCH
Q 010215 485 RYQTCRLILDEVKQKHMY 502 (515)
Q Consensus 485 ~~~~~~~ll~~~~~~g~~ 502 (515)
.......++..+......
T Consensus 335 ~g~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 335 EGEAMAQQLRQLIQLNTL 352 (373)
T ss_dssp THHHHHHHHHHHHHTTCS
T ss_pred ccHHHHHHHHHHHhCCCC
Confidence 223345566777666665
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.31 E-value=3.1e-10 Score=108.41 Aligned_cols=31 Identities=13% Similarity=0.044 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHH--HcCCChHHHHHHHHHHhc
Q 010215 132 HSSEIYEMMVDIL--GKVRQMDQMRALLEEMSK 162 (515)
Q Consensus 132 ~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~ 162 (515)
|+..+-+.|-+.| ...+++++|.++++++..
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~ 40 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQ 40 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 4455556666666 667777888777777644
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.27 E-value=6.1e-10 Score=98.04 Aligned_cols=205 Identities=8% Similarity=-0.046 Sum_probs=157.4
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 010215 132 HSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHI-VTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLL 210 (515)
Q Consensus 132 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 210 (515)
.|+..+......+.+.|++++|.+.|++....++ .+..++..+..++...|++++|++.|++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 4678888999999999999999999999988777 777888778999999999999999999998864 33667888899
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCCh-------hhHHHHHHHHHccCChhHHHHHHHHHHhCCCCcc---HhHHHHHHH
Q 010215 211 DTLCKEGKVELARSVFLELKSCIPPNA-------HTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPC---VISYSTIIQ 280 (515)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~ 280 (515)
.++...|++++|...+++.....|.+. .+|..+...+.+.|++++|...|++..+.. |+ ...|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHHHH
Confidence 999999999999999999665556666 568888889999999999999999998763 44 567777777
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 010215 281 SYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCL 348 (515)
Q Consensus 281 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 348 (515)
.|...|+ ..++++...+ ..+...|.... ....+.+++|...+++..+.. +.+..+...+
T Consensus 162 ~~~~~~~-----~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l 220 (228)
T 4i17_A 162 LFYNNGA-----DVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQ 220 (228)
T ss_dssp HHHHHHH-----HHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 7765543 3445554443 22344444433 234567899999999998864 3344444433
No 82
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.26 E-value=2.6e-07 Score=93.70 Aligned_cols=422 Identities=9% Similarity=-0.011 Sum_probs=269.5
Q ss_pred CCChhhHHHHHHHhcCCCCHH---HHHHHhhccccCCCCcCCHHHHHHHHHHhh--hC---HHHHHHHHHHhccCCCCCC
Q 010215 61 SPRLPDIDVIISKVHVGSSED---EVFQSLKQDHVCNAIQPSHYLVNKLIHRFK--DD---WKSALGIFRWAGSCPGYEH 132 (515)
Q Consensus 61 ~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~g~~p~~~~~~~ll~~~~--~~---~~~a~~~~~~~~~~~~~~~ 132 (515)
+.|...|...+.......... .+|+++... .+.+...|..-+..-. ++ .+.+..+|+.+......+|
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-----fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~ 137 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-----FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNN 137 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCC
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCC
Confidence 457889999986554333333 367776652 3345556665555433 35 8899999999974332348
Q ss_pred CHHHHHHHHHHHHcCCCh--------HHHHHHHHHHhc---C-CCCC---HHHHHHHHHH------HHhcCCHHHHHHHH
Q 010215 133 SSEIYEMMVDILGKVRQM--------DQMRALLEEMSK---G-HIVT---LNTIAKVMRR------FSGAGQWEDAVRTF 191 (515)
Q Consensus 133 ~~~~~~~li~~~~~~g~~--------~~A~~~~~~~~~---~-~~~~---~~~~~~li~~------~~~~g~~~~A~~~~ 191 (515)
++..|..-++...+.++. +...++|+.... . ++.+ |..|..+... +..+++.+.+..+|
T Consensus 138 sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy 217 (679)
T 4e6h_A 138 DLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLY 217 (679)
T ss_dssp CHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHH
Confidence 999999988877666554 345578877653 2 3444 4444332221 12344578899999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHH-------------cCCHHHHHHHHHHhh---cCC----CCC---------------
Q 010215 192 DELGTFGLEKNTETMNLLLDTLCK-------------EGKVELARSVFLELK---SCI----PPN--------------- 236 (515)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~-------------~~~~~~a~~~~~~~~---~~~----~~~--------------- 236 (515)
.+........-..+|......-.. ..+++.|...+.++. .++ +..
T Consensus 218 ~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~ 297 (679)
T 4e6h_A 218 KTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEY 297 (679)
T ss_dssp HHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCC
T ss_pred HHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchh
Confidence 999864222223344322211111 122344555554421 111 111
Q ss_pred ----hhhHHHHHHHHHccC-------ChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHH-HHHHHHHHCCCC
Q 010215 237 ----AHTFNIFIHGWCKIN-------RVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVY-ELLDEMQAQGCP 304 (515)
Q Consensus 237 ----~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~ 304 (515)
...|...+..--..+ ..+.+..+|++.... ++-+...|-..+..+...|+.++|. ++|+..... ++
T Consensus 298 ~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P 375 (679)
T 4e6h_A 298 DVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IP 375 (679)
T ss_dssp CHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CT
T ss_pred HHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CC
Confidence 134555555433322 123355678887664 2446788888888888999999997 999998864 44
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------CCC------------HHHHHHHHHHHHhcCCHHHHHH
Q 010215 305 PNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGS---------KPD------------SRFFNCLIYTLGRASRVQEAVY 363 (515)
Q Consensus 305 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---------~~~------------~~~~~~li~~~~~~g~~~~A~~ 363 (515)
.+...+...+...-+.|+++.|.++|+.+..... .|+ ..+|...+....+.|+.+.|..
T Consensus 376 ~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~ 455 (679)
T 4e6h_A 376 NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRK 455 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHH
Confidence 5666677788888899999999999999886410 132 3467777888888999999999
Q ss_pred HHHhhchhCCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010215 364 VYQVEMPENGVAPDTSTFNTMITMFSHH-GHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMV 442 (515)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 442 (515)
+|. ...+.........|...+..-.+. ++.+.|..+|+...+.- +-+...+...+......|+.+.|. .+|+...
T Consensus 456 vf~-~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR-~lferal 531 (679)
T 4e6h_A 456 IFG-KCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVK-SLFESSI 531 (679)
T ss_dssp HHH-HHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHH-HHHHHHT
T ss_pred HHH-HHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHH-HHHHHHH
Confidence 999 554430111233343333333333 55899999999998853 445566677888788899999998 9999997
Q ss_pred HcCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010215 443 NKHHLSL--DITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEV 496 (515)
Q Consensus 443 ~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 496 (515)
.... .+ ....|...+..-.+.|+.+.+.++.+++.+ ..|+......+..-|
T Consensus 532 ~~~~-~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~--~~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 532 DKIS-DSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE--KFPEVNKLEEFTNKY 584 (679)
T ss_dssp TTSS-STTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH--HSTTCCHHHHHHHHT
T ss_pred HhcC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCcHHHHHHHHh
Confidence 7321 11 356899999999999999999999999987 345555555555444
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.25 E-value=2.2e-10 Score=117.45 Aligned_cols=168 Identities=13% Similarity=0.056 Sum_probs=146.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHH
Q 010215 165 IVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFI 244 (515)
Q Consensus 165 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 244 (515)
|.+..++..+...|.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|++.|++..+..|.+..+|+.+.
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3457788899999999999999999999998853 346889999999999999999999999996655677889999999
Q ss_pred HHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 010215 245 HGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFE 324 (515)
Q Consensus 245 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 324 (515)
.+|.+.|++++|++.|++..+.. +-+...|+.+..+|.+.|++++|++.|++..+.. +-+...+..+...+...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999988764 3467889999999999999999999999998863 235788999999999999999
Q ss_pred HHHHHHHHHHh
Q 010215 325 EAIRITEKMKI 335 (515)
Q Consensus 325 ~a~~~~~~~~~ 335 (515)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988887754
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.22 E-value=2.2e-09 Score=94.42 Aligned_cols=194 Identities=11% Similarity=-0.038 Sum_probs=151.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 010215 166 VTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIH 245 (515)
Q Consensus 166 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 245 (515)
.+...+......+...|++++|++.|++..+...+++...+..+..++...|++++|+..+++.....|.+..++..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 35577778889999999999999999999887543788888889999999999999999999976666778889999999
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCccH-------hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 010215 246 GWCKINRVDEAQWTIQEMKGHGCHPCV-------ISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPN---VVTYTTVMS 315 (515)
Q Consensus 246 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~ 315 (515)
.|...|++++|...|++..+.. +.+. ..|..+...+...|++++|++.|++..+. .|+ ..++..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 9999999999999999998763 2234 45788888899999999999999998875 454 456667777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchh
Q 010215 316 YLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPE 371 (515)
Q Consensus 316 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 371 (515)
.+... +..+++++...+ ..+...+..... ...+.+++|...|+ ...+
T Consensus 162 ~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~-~a~~ 208 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLG-EAVT 208 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHH-HHHH
T ss_pred HHHHH-----HHHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHH-HHhh
Confidence 76544 344556666554 344555554443 34567899999999 5444
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.21 E-value=1.6e-10 Score=105.19 Aligned_cols=219 Identities=11% Similarity=0.062 Sum_probs=125.7
Q ss_pred CCChHHHHHHHHHHhc-------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCC-CHHHHHHHHH
Q 010215 147 VRQMDQMRALLEEMSK-------GH-IVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTF------GLEK-NTETMNLLLD 211 (515)
Q Consensus 147 ~g~~~~A~~~~~~~~~-------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~~~~ll~ 211 (515)
.|++++|+..|++..+ .+ +....++..+...|...|++++|++.|++..+. +-.| ...++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 4455555555444432 22 234556666777777777777777777776543 1112 3456677777
Q ss_pred HHHHcCCHHHHHHHHHHhhcC--------CCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC------C-CCccHhHHH
Q 010215 212 TLCKEGKVELARSVFLELKSC--------IPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH------G-CHPCVISYS 276 (515)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~ 276 (515)
.|...|++++|...+.+.... .+....++..+...|...|++++|...+++..+. + .+....++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 777778888877777763221 1334566777778888888888888888777653 1 122345677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC-------CCCCCH-HHHHHHHHHHHhcCC------HHHHHHHHHHHHhcCCCCCH
Q 010215 277 TIIQSYCRQYNFSKVYELLDEMQAQ-------GCPPNV-VTYTTVMSYLAKSGD------FEEAIRITEKMKIVGSKPDS 342 (515)
Q Consensus 277 ~li~~~~~~g~~~~A~~~~~~m~~~-------g~~~~~-~~~~~li~~~~~~g~------~~~a~~~~~~~~~~~~~~~~ 342 (515)
.+...|...|++++|++.+++..+. ...+.. ..+..+.......+. +..+...++.... ..+...
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 252 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVN 252 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHH
Confidence 7778888888888888888776652 112221 222222222222222 2222222222111 112234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 010215 343 RFFNCLIYTLGRASRVQEAVYVYQ 366 (515)
Q Consensus 343 ~~~~~li~~~~~~g~~~~A~~~~~ 366 (515)
.++..+...|...|++++|...|+
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~ 276 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLED 276 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 567777888888888888888887
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.18 E-value=1.2e-09 Score=100.12 Aligned_cols=243 Identities=10% Similarity=0.020 Sum_probs=138.1
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHHcc--C-ChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHH
Q 010215 221 LARSVFLELKSCIPPNAHTFNIFIHGWCKI--N-RVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDE 297 (515)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~--g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 297 (515)
+|.+++.+..+..++....| .+ + +. + ++++|...|++. ...|...|++++|++.|++
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-~~---~-~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~ 62 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-KL---F-SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLK 62 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-HH---H-SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-hh---c-CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHH
Confidence 35566666554444433333 22 2 32 2 477777777765 3356678888888888887
Q ss_pred HHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhc-CCHHHHHHHHH
Q 010215 298 MQAQ----GCPPN-VVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSK-PD----SRFFNCLIYTLGRA-SRVQEAVYVYQ 366 (515)
Q Consensus 298 m~~~----g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~-g~~~~A~~~~~ 366 (515)
..+. |-.++ ..+|+.+...|.+.|++++|+..+++..+.... .+ ..+++.+...|... |++++|...|+
T Consensus 63 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~ 142 (292)
T 1qqe_A 63 AADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYE 142 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 6542 22212 457778888888888888888888877653111 11 34566667777775 77777777777
Q ss_pred hhchhCCC-CCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCH-----HhHHHHHHHHHhcCChHHHHHH
Q 010215 367 VEMPENGV-APD----TSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNV-----QTFHPLLKSCFKTGKTDECLSQ 436 (515)
Q Consensus 367 ~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-----~~~~~ll~~~~~~g~~~~A~~~ 436 (515)
...+... ..+ ..+++.+...+...|++++|+..|++..+...-.+.. ..+..+..++...|++++|+ .
T Consensus 143 -~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~-~ 220 (292)
T 1qqe_A 143 -LAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAA-R 220 (292)
T ss_dssp -HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHH-H
T ss_pred -HHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHH-H
Confidence 3333211 111 2356666777777777777777777777643111111 13455566666777777777 6
Q ss_pred HHHHHHHcCCCCCCHH------HHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010215 437 LLDDMVNKHHLSLDIT------TYTLVIHGLC--RANKCEWAYLLFKEMIGHDITPRYQTCRLI 492 (515)
Q Consensus 437 ~~~~~~~~~~~~p~~~------~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 492 (515)
.+++..+ +.|+.. .+..++.++. ..+++++|+..|+++ ...++..-..+
T Consensus 221 ~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~----~~l~~~~~~~~ 277 (292)
T 1qqe_A 221 TLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF----MRLDKWKITIL 277 (292)
T ss_dssp HHHGGGC---C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS----SCCCHHHHHHH
T ss_pred HHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC----CccHHHHHHHH
Confidence 6666654 333311 2233444443 345566666666554 34555443333
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.18 E-value=6.4e-10 Score=101.09 Aligned_cols=228 Identities=13% Similarity=0.110 Sum_probs=156.1
Q ss_pred HhcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CC-CCCHHHHHHH
Q 010215 283 CRQYNFSKVYELLDEMQAQ-------GCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIV------GS-KPDSRFFNCL 348 (515)
Q Consensus 283 ~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 348 (515)
...|++++|++++++..+. ..+....++..+...+...|++++|...++++.+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567778887777776651 22224667888999999999999999999998764 21 2335678889
Q ss_pred HHHHHhcCCHHHHHHHHHhhchhC------C-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC-----CCCCCC-HH
Q 010215 349 IYTLGRASRVQEAVYVYQVEMPEN------G-VAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKL-----EHCKPN-VQ 415 (515)
Q Consensus 349 i~~~~~~g~~~~A~~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~p~-~~ 415 (515)
...|...|++++|...|. ..... . .+.....+..+...|...|++++|++.++++.+. +...|+ ..
T Consensus 92 ~~~~~~~g~~~~A~~~~~-~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCK-RALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHTTTCHHHHHHHHH-HHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHH-HHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 999999999999999998 54432 1 1223567888999999999999999999999874 101333 55
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHHcC------CCCC-CHHHHHHHHHHHHhcCCHHH------HHHHHHHHHhCCC
Q 010215 416 TFHPLLKSCFKTGKTDECLSQLLDDMVNKH------HLSL-DITTYTLVIHGLCRANKCEW------AYLLFKEMIGHDI 482 (515)
Q Consensus 416 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~------~~~p-~~~~~~~li~~~~~~g~~~~------A~~~~~~m~~~~~ 482 (515)
++..+...+...|++++|. .++++..+.. ...+ ....|..+.......+.... +...++.... .
T Consensus 171 ~~~~la~~~~~~g~~~~A~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 247 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAE-TLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--D 247 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHH-HHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--C
T ss_pred HHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--C
Confidence 7888889999999999999 8998887631 1122 22334444444443333322 2222222210 1
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 483 TP-RYQTCRLILDEVKQKHMYDAAEKIEAVMKK 514 (515)
Q Consensus 483 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 514 (515)
.| ...++..+...+...|++++|.++++...+
T Consensus 248 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 248 SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12 234677777888999999999999998765
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.15 E-value=2.7e-09 Score=96.06 Aligned_cols=188 Identities=7% Similarity=-0.026 Sum_probs=124.2
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CC-CHHH
Q 010215 131 EHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVT---LNTIAKVMRRFSGAGQWEDAVRTFDELGTFGL-EK-NTET 205 (515)
Q Consensus 131 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~-~~~~ 205 (515)
+.++..+-.+...+.+.|++++|...|+++...++.+ ..++..+..+|.+.|++++|+..|++..+... .| ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 3467777888888889999999999999998877766 78888888999999999999999999887521 11 2456
Q ss_pred HHHHHHHHHH--------cCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHH
Q 010215 206 MNLLLDTLCK--------EGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYST 277 (515)
Q Consensus 206 ~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 277 (515)
+..+..++.. .|++++|...|+++....|.+......+... ..+... -...+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~--------------~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKI--------------RELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHH--------------HHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHH--------------HHHHHH----HHHHHHH
Confidence 6677778888 8889999999988655455554444332111 111100 0112445
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhc
Q 010215 278 IIQSYCRQYNFSKVYELLDEMQAQGCPP--NVVTYTTVMSYLAKS----------GDFEEAIRITEKMKIV 336 (515)
Q Consensus 278 li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~ 336 (515)
+...|.+.|++++|+..|+++.+..... ....+..+..+|... |++++|...++++.+.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 5566666777777777777666542111 234555555666544 6667777777776664
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.15 E-value=4.8e-09 Score=96.13 Aligned_cols=231 Identities=13% Similarity=0.052 Sum_probs=157.4
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc--C-CHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHH
Q 010215 186 DAVRTFDELGTFGLEKNTETMNLLLDTLCKE--G-KVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQE 262 (515)
Q Consensus 186 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~--~-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 262 (515)
+|.+++.+..+. .++....+ .+ .+. + ++++|...|.+. ...|...|++++|...|++
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~~----~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~ 62 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-KL----FSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLK 62 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-HH----HSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-hh----cCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHH
Confidence 466777777664 22221222 22 233 2 488888888775 4467788999999999988
Q ss_pred HHhC----CCCcc-HhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhc-CCHHHHHHHHH
Q 010215 263 MKGH----GCHPC-VISYSTIIQSYCRQYNFSKVYELLDEMQAQ----GCPP-NVVTYTTVMSYLAKS-GDFEEAIRITE 331 (515)
Q Consensus 263 ~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~-g~~~~a~~~~~ 331 (515)
..+. |-+++ ..+|+.+...|...|++++|+..+++..+. |-.. -..++..+...|... |++++|+..|+
T Consensus 63 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~ 142 (292)
T 1qqe_A 63 AADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYE 142 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 7543 31222 568899999999999999999999987753 2111 135788888899986 99999999999
Q ss_pred HHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCH------HHHHHHHHHHHhCCCHHHHHHH
Q 010215 332 KMKIVGSK-PD----SRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDT------STFNTMITMFSHHGHHEKAFHV 400 (515)
Q Consensus 332 ~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~ 400 (515)
+..+.... .+ ..++..+...|.+.|++++|...|+ ...+....... ..|..+..++...|++++|+..
T Consensus 143 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~-~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 221 (292)
T 1qqe_A 143 LAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYS-KLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAART 221 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 98774211 11 3567888899999999999999999 55543322221 1567788889999999999999
Q ss_pred HHHHHhCCCCCCCHH------hHHHHHHHHH--hcCChHHHHHHHHHHH
Q 010215 401 LEEMNKLEHCKPNVQ------TFHPLLKSCF--KTGKTDECLSQLLDDM 441 (515)
Q Consensus 401 ~~~m~~~~~~~p~~~------~~~~ll~~~~--~~g~~~~A~~~~~~~~ 441 (515)
|++..+. .|+.. .+..++.++. ..+++++|+ ..++.+
T Consensus 222 ~~~al~l---~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~-~~~~~~ 266 (292)
T 1qqe_A 222 LQEGQSE---DPNFADSRESNFLKSLIDAVNEGDSEQLSEHC-KEFDNF 266 (292)
T ss_dssp HHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHH-HHHTTS
T ss_pred HHHHHhh---CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHH-HHhccC
Confidence 9999873 45422 2344555554 345677777 666544
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.12 E-value=3.2e-09 Score=84.27 Aligned_cols=124 Identities=14% Similarity=0.182 Sum_probs=59.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChh
Q 010215 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVD 254 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 254 (515)
...+...|++++|+++|+++.+.+ +.+...+..+...+...|++++|...++++....+.+...+..+...+...|+++
T Consensus 8 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 86 (136)
T 2fo7_A 8 GNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 86 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHH
Confidence 344444444444444444444332 2234444444444444455555555554433323334444555555555555555
Q ss_pred HHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010215 255 EAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQA 300 (515)
Q Consensus 255 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 300 (515)
+|...++++.+.. +.+...+..+...+...|++++|.+.++++..
T Consensus 87 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 87 EAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 5555555554432 22344455555555555555555555555544
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.09 E-value=4.1e-09 Score=91.24 Aligned_cols=177 Identities=10% Similarity=-0.050 Sum_probs=77.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 010215 137 YEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKE 216 (515)
Q Consensus 137 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 216 (515)
+-.....+.+.|++++|...|++....++.+..++... .... ...........+..++.+.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~-----~~~~--------------~~~~~~~~~~~lg~~~~~~ 67 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWT-----NVDK--------------NSEISSKLATELALAYKKN 67 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHH-----HSCT--------------TSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHh-----hhcc--------------hhhhhHHHHHHHHHHHHHC
Confidence 33344555566777777777776666555444444430 0000 0000001111244455555
Q ss_pred CCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCC--hhHHHHH
Q 010215 217 GKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYN--FSKVYEL 294 (515)
Q Consensus 217 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~ 294 (515)
|++++|+..|++.....|.+...+..+..++...|++++|...|++..+.. +.+..+|..+...|...|+ .+.+...
T Consensus 68 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~ 146 (208)
T 3urz_A 68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETD 146 (208)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 555555555555333334445555555555555555555555555554432 2234444444444443332 2223333
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 295 LDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKI 335 (515)
Q Consensus 295 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 335 (515)
++.... ..|....+.....++...|++++|...|++..+
T Consensus 147 ~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 147 YKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 333221 111112222233334445555555555555554
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.09 E-value=6.7e-08 Score=87.03 Aligned_cols=79 Identities=6% Similarity=-0.068 Sum_probs=34.8
Q ss_pred HHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010215 256 AQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGC-PPNVVTYTTVMSYLAKSGDFEEAIRITEKMK 334 (515)
Q Consensus 256 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 334 (515)
|...|++....+ .++..++..+..++...|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444443332 22333333444444455555555555544433322 1133444444445555555555555555544
Q ss_pred h
Q 010215 335 I 335 (515)
Q Consensus 335 ~ 335 (515)
+
T Consensus 164 ~ 164 (310)
T 3mv2_B 164 N 164 (310)
T ss_dssp H
T ss_pred h
Confidence 4
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.07 E-value=8.1e-09 Score=81.87 Aligned_cols=129 Identities=12% Similarity=0.111 Sum_probs=69.9
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 010215 136 IYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCK 215 (515)
Q Consensus 136 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 215 (515)
.+..+...+...|++++|..+|+++...++.+...+..+...+...|++++|...|+++.+.+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 344555555555555555555555555444455555555555555555555555555555432 2344455555555555
Q ss_pred cCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHh
Q 010215 216 EGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKG 265 (515)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 265 (515)
.|++++|.+.++++....+.+..++..+...+.+.|++++|...++++..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 55555555555554333344455555555555555555555555555543
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.04 E-value=2.4e-08 Score=89.93 Aligned_cols=243 Identities=11% Similarity=0.033 Sum_probs=150.2
Q ss_pred cCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010215 146 KVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSV 225 (515)
Q Consensus 146 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~ 225 (515)
-.|++..++.-...+... .......-+.++|...|+++... .-.|....+..+.. |...+ ++..
T Consensus 25 y~G~yq~~i~e~~~~~~~--~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~-~~~~~----a~~~ 88 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKFSKV--TDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQ-FLDTK----NIEE 88 (310)
T ss_dssp TTTCHHHHTHHHHTSSCC--CCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHH-HHTTT----CCHH
T ss_pred HhhHHHHHHHHHHhcCcc--chHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHH-Hhccc----HHHH
Confidence 467777777633322211 12223333457777777765311 12344334333333 22322 6677
Q ss_pred HHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCC-CccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 010215 226 FLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGC-HPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCP 304 (515)
Q Consensus 226 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 304 (515)
++++....+++..++..+..++...|++++|++++.+....+- .-+...+..++..+.+.|+.+.|.+.+++|.+. .
T Consensus 89 l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~ 166 (310)
T 3mv2_B 89 LENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--I 166 (310)
T ss_dssp HHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--S
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C
Confidence 7774433345566666788888888888888888888766542 135667778888888888888898888888765 4
Q ss_pred C-----CHHHHHHHHHHHH--hcC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhC---
Q 010215 305 P-----NVVTYTTVMSYLA--KSG--DFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPEN--- 372 (515)
Q Consensus 305 ~-----~~~~~~~li~~~~--~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--- 372 (515)
| +..+...+..++. ..| ++.+|..+|+++.+. .|+......++.++.+.|++++|...++ .+.+.
T Consensus 167 ~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~-~l~~~~p~ 243 (310)
T 3mv2_B 167 EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVE-LLLSDYYS 243 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHH-HHHSHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHH-HHHHhccc
Confidence 5 3556666666633 334 788888888888664 3443333444447888888888888887 54331
Q ss_pred --C----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCH
Q 010215 373 --G----VAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNV 414 (515)
Q Consensus 373 --~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 414 (515)
. -+.|..++-.+|......|+ +|.+++.++.+. .|+.
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~---~P~h 286 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL---DHEH 286 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT---TCCC
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh---CCCC
Confidence 0 02345566455555555676 788888888884 4554
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.04 E-value=2.6e-09 Score=109.89 Aligned_cols=202 Identities=9% Similarity=-0.045 Sum_probs=146.7
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh--------hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 010215 160 MSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELG--------TFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKS 231 (515)
Q Consensus 160 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 231 (515)
++..++.+..+... .+ ...|++++|++.+++.. +.. +.+...+..+..++...|++++|+..|++...
T Consensus 386 ~p~~~p~~~~a~~~--~a-~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 461 (681)
T 2pzi_A 386 VPLVDPTDVAASVL--QA-TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAE 461 (681)
T ss_dssp CBCCCTTSTTHHHH--HH-TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CccCCCCCcchHHh--hc-ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 34555544444321 22 67888888888888887 322 34567778888888888899999888888665
Q ss_pred CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 010215 232 CIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYT 311 (515)
Q Consensus 232 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 311 (515)
..+.+...|..+..+|.+.|++++|...|++..+.. +-+...|..+..++.+.|++++ ++.|++..+.+ +.+...+.
T Consensus 462 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~ 538 (681)
T 2pzi_A 462 RVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAF 538 (681)
T ss_dssp HHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHH
T ss_pred cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHH
Confidence 566778888888888888899999999888887754 3356778888888888899888 88888887763 23667888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHhhch
Q 010215 312 TVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRAS--------RVQEAVYVYQVEMP 370 (515)
Q Consensus 312 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~~~~ 370 (515)
.+..++.+.|++++|.+.|+++.+.. +.+...+..+..++...+ ++++|.+.+. .+.
T Consensus 539 ~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~-~~~ 603 (681)
T 2pzi_A 539 GLARARSAEGDRVGAVRTLDEVPPTS-RHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVE-ALP 603 (681)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCTTS-TTHHHHHHHHHHHTC-------CCHHHHHHHHHHHH-TSC
T ss_pred HHHHHHHHcCCHHHHHHHHHhhcccC-cccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHh-hCC
Confidence 88888888999999998888887653 233556666666665533 3667777776 443
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.04 E-value=1.7e-08 Score=87.20 Aligned_cols=132 Identities=15% Similarity=0.094 Sum_probs=88.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 010215 278 IIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASR 357 (515)
Q Consensus 278 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 357 (515)
+..+|.+.|++++|+..|++..+.. +-+...+..+...+...|++++|...|+++.+.. +.+..++..+...|...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 7777888888888888888877763 2367778888888888888888888888888764 4567777777777765543
Q ss_pred --HHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhH
Q 010215 358 --VQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTF 417 (515)
Q Consensus 358 --~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~ 417 (515)
.+.+...+. .... ..|....+.....++...|++++|+..|++..+ ..|+....
T Consensus 138 ~~~~~~~~~~~-~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~---l~P~~~~~ 193 (208)
T 3urz_A 138 QEKKKLETDYK-KLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL---RFPSTEAQ 193 (208)
T ss_dssp HHHHHHHHHHC----C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT---TSCCHHHH
T ss_pred HHHHHHHHHHH-HHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCHHHH
Confidence 344455554 3321 122222344455566667888888888888887 45775443
No 97
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.03 E-value=1.9e-08 Score=90.50 Aligned_cols=211 Identities=12% Similarity=0.062 Sum_probs=135.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC---CCh
Q 010215 164 HIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKN---TETMNLLLDTLCKEGKVELARSVFLELKSCIP---PNA 237 (515)
Q Consensus 164 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~ 237 (515)
.+.+...+..+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++...|++++|...|+++....| ...
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 34556666777778888888888888888887753 223 56677777788888888888888887443322 224
Q ss_pred hhHHHHHHHHHc--------cCChhHHHHHHHHHHhCCCCccH-hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 010215 238 HTFNIFIHGWCK--------INRVDEAQWTIQEMKGHGCHPCV-ISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVV 308 (515)
Q Consensus 238 ~~~~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 308 (515)
.++..+..++.+ .|++++|...|+++.+.. |+. ..+..+. .+...... -..
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~--------------~~~~~~~~----~~~ 149 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQ--------------KIRELRAK----LAR 149 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHH--------------HHHHHHHH----HHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHH--------------HHHHHHHH----HHH
Confidence 556667777777 778888888888777642 322 2222111 11111100 011
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHhhchhCCCCC
Q 010215 309 TYTTVMSYLAKSGDFEEAIRITEKMKIVGSKP--DSRFFNCLIYTLGRA----------SRVQEAVYVYQVEMPENGVAP 376 (515)
Q Consensus 309 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~~~~~ 376 (515)
.+..+...|.+.|++++|...|+++.+..... ....+..+..+|... |++++|...|+ ...+. .|
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~-~~~~~--~p 226 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYE-RLLQI--FP 226 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHH-HHHHH--CT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHH-HHHHH--CC
Confidence 24567788999999999999999998864221 345777788888766 89999999999 55443 24
Q ss_pred CH----HHHHHHHHHHHhCCCHHHHH
Q 010215 377 DT----STFNTMITMFSHHGHHEKAF 398 (515)
Q Consensus 377 ~~----~~~~~li~~~~~~g~~~~A~ 398 (515)
+. .....+-..+...++++++.
T Consensus 227 ~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 227 DSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp TCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 32 34455555555555555443
No 98
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.01 E-value=1.6e-09 Score=88.24 Aligned_cols=144 Identities=9% Similarity=-0.049 Sum_probs=81.3
Q ss_pred HHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH
Q 010215 141 VDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVE 220 (515)
Q Consensus 141 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 220 (515)
..++...|++++|+..+......++.....+..+...|.+.|++++|++.|++..+.. +-+..+|..+..+|...|+++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 3444555666666666666655444444444455666666666666666666666542 335666666666666666666
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHH-HHHHHhCCCCccHhHHHHHHHHHHhcC
Q 010215 221 LARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWT-IQEMKGHGCHPCVISYSTIIQSYCRQY 286 (515)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g 286 (515)
+|+..|++..+..|.+..++..+...|.+.|++++|.+. +++..+.. +-+..+|......+...|
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 666666664444455566666666666666666554443 35554432 224445555555444444
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.01 E-value=5.2e-09 Score=87.86 Aligned_cols=161 Identities=9% Similarity=-0.056 Sum_probs=106.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHH
Q 010215 137 YEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDT-LCK 215 (515)
Q Consensus 137 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~-~~~ 215 (515)
+..+...+.+.|++++|...|++..+.++.+..++..+...+.+.|++++|+..|++..+.. |+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 44556677778888888888888777777777777777888888888888888888776643 344433322211 112
Q ss_pred cCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCc-cHhHHHHHHHHHHhcCChhHHHHH
Q 010215 216 EGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHP-CVISYSTIIQSYCRQYNFSKVYEL 294 (515)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~ 294 (515)
.+....|...+++.....|.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|...
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 2222345666666444455667777777777777777777777777777653221 244677777777777777777777
Q ss_pred HHHHH
Q 010215 295 LDEMQ 299 (515)
Q Consensus 295 ~~~m~ 299 (515)
|++..
T Consensus 167 y~~al 171 (176)
T 2r5s_A 167 YRRQL 171 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 100
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.99 E-value=3.3e-08 Score=86.67 Aligned_cols=187 Identities=10% Similarity=-0.034 Sum_probs=121.6
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCH-HHHH
Q 010215 133 SSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVT---LNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLE-KNT-ETMN 207 (515)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~-~~~~ 207 (515)
++..+..+...+.+.|++++|+..|+++....+.+ ..++..+..+|.+.|++++|+..|+++.+.... +.. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 44566667777888899999999998887755532 467777788888899999999999888764311 111 2343
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCC
Q 010215 208 LLLDTLCK------------------EGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCH 269 (515)
Q Consensus 208 ~ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 269 (515)
.+..++.. .|+.++|...|+++....|.+..++.+..... .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~----------~~~~~~------ 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLV----------FLKDRL------ 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHH----------HHHHHH------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHH----------HHHHHH------
Confidence 34444443 45667777777775555555544443221110 000000
Q ss_pred ccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010215 270 PCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPP--NVVTYTTVMSYLAKSGDFEEAIRITEKMKIVG 337 (515)
Q Consensus 270 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 337 (515)
......+...|.+.|++++|+..|+++.+..... ....+..+..++.+.|+.++|.+.++.+...+
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0112345677888999999999999988752111 12567788889999999999999999887764
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.98 E-value=1.1e-08 Score=93.29 Aligned_cols=167 Identities=10% Similarity=-0.054 Sum_probs=126.4
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH-H
Q 010215 131 EHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNL-L 209 (515)
Q Consensus 131 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-l 209 (515)
+.+...+..+...+.+.|++++|...|++....++.+..++..+...+.+.|++++|+..++++... .|+...... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 3456677778888888899999999999888888888888888888888899999999988888764 345443322 2
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCC-ccHhHHHHHHHHHHhcCCh
Q 010215 210 LDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCH-PCVISYSTIIQSYCRQYNF 288 (515)
Q Consensus 210 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~ 288 (515)
...+...++.+.|...+++.....|.+...+..+...+...|++++|...|+++.+.... .+...+..++..+...|+.
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 233556677777888887765556778888888888888888888888888888775311 1256788888888888888
Q ss_pred hHHHHHHHHHH
Q 010215 289 SKVYELLDEMQ 299 (515)
Q Consensus 289 ~~A~~~~~~m~ 299 (515)
++|...|++..
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 88888777654
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.98 E-value=7.1e-09 Score=106.68 Aligned_cols=185 Identities=8% Similarity=-0.037 Sum_probs=150.2
Q ss_pred HHcCCHHHHHHHHHHhh--------cCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhc
Q 010215 214 CKEGKVELARSVFLELK--------SCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQ 285 (515)
Q Consensus 214 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 285 (515)
...|++++|++.+++.. ...+.+...+..+...|.+.|++++|...|++..+.. +.+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 67899999999999965 5567788899999999999999999999999998764 34678899999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010215 286 YNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVY 365 (515)
Q Consensus 286 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 365 (515)
|++++|++.|++..+.. +-+...+..+..++.+.|++++ .+.|++..+.. +.+...+..+..+|.+.|++++|...|
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998863 2256788899999999999999 99999998875 567788999999999999999999999
Q ss_pred HhhchhCCCCCC-HHHHHHHHHHHHhCCC--------HHHHHHHHHHHH
Q 010215 366 QVEMPENGVAPD-TSTFNTMITMFSHHGH--------HEKAFHVLEEMN 405 (515)
Q Consensus 366 ~~~~~~~~~~~~-~~~~~~li~~~~~~g~--------~~~A~~~~~~m~ 405 (515)
+ ...+. .|+ ...|..+..++...++ +++|.+.+..+.
T Consensus 558 ~-~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 558 D-EVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp H-TSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred H-hhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 9 65543 455 5677777777765444 555666665553
No 103
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.95 E-value=5.5e-07 Score=81.93 Aligned_cols=225 Identities=8% Similarity=0.013 Sum_probs=103.3
Q ss_pred ChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH----HHc---CCH
Q 010215 149 QMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAG--QWEDAVRTFDELGTFGLEKNTETMNLLLDTL----CKE---GKV 219 (515)
Q Consensus 149 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~----~~~---~~~ 219 (515)
..++|+++++.+...++....+.+.-...+...| +++++++.++.+.... +-+..+|+.-...+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3356666666666666655555554444555555 5666666666555532 22333333322222 222 344
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChh--HHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHH
Q 010215 220 ELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVD--EAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDE 297 (515)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 297 (515)
++++.+++.+....+.|..+|+.-.-.+.+.|.++ ++++.++++.+.. +-|...|+.-...+...+...
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~-------- 197 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLA-------- 197 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGC--------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccc--------
Confidence 44444444433334444444444444444444444 4444444444432 123334443333333333200
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHhhchhCC--C
Q 010215 298 MQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQE-AVYVYQVEMPENG--V 374 (515)
Q Consensus 298 m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~~--~ 374 (515)
+ ...++++++.++.+.... +-|...|+.+-..+.+.|+..+ +..+.. ...+.+ -
T Consensus 198 --------~-------------~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~-~~~~~~~~~ 254 (306)
T 3dra_A 198 --------T-------------DNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSL-QFVDLEKDQ 254 (306)
T ss_dssp --------C-------------HHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHH-TTEEGGGTE
T ss_pred --------h-------------hhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHH-HHHhccCCC
Confidence 0 000455555555555443 4445555555555555554332 223333 322211 1
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010215 375 APDTSTFNTMITMFSHHGHHEKAFHVLEEMNK 406 (515)
Q Consensus 375 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 406 (515)
..+...+..+...|.+.|+.++|.++++.+.+
T Consensus 255 ~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 255 VTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp ESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 23455556666666666666666666666654
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.94 E-value=1.2e-08 Score=85.63 Aligned_cols=161 Identities=11% Similarity=0.026 Sum_probs=96.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHH-HHc
Q 010215 171 IAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHG-WCK 249 (515)
Q Consensus 171 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~-~~~ 249 (515)
.......+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+....| +...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHh
Confidence 3444566777777888877777766542 33566677777777777777777777777443333 44433322211 112
Q ss_pred cCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 010215 250 INRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPP-NVVTYTTVMSYLAKSGDFEEAIR 328 (515)
Q Consensus 250 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~ 328 (515)
.+...+|...+++..+.. +.+...+..+...+...|++++|++.|+++.+....+ +...+..+...+...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 223334566666665542 2245666667777777777777777777766653222 24456666667777777777776
Q ss_pred HHHHHH
Q 010215 329 ITEKMK 334 (515)
Q Consensus 329 ~~~~~~ 334 (515)
.|++..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.93 E-value=2.4e-08 Score=100.82 Aligned_cols=163 Identities=12% Similarity=0.056 Sum_probs=116.8
Q ss_pred hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010215 112 DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTF 191 (515)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 191 (515)
++.++|...++.+... .+.+...+..+...|.+.|++++|.+.|++..+.++.+..++..+...|...|++++|++.|
T Consensus 3 g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4567788888877532 24467888888888888899999999999888888888888888888888999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcc---CChhHHHHHHHHHHhCCC
Q 010215 192 DELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKI---NRVDEAQWTIQEMKGHGC 268 (515)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~ 268 (515)
++..+.. +.+...+..+..++...|++++|.+.+++.....+.+...+..+...+... |+.++|.+.+++..+.+
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~- 158 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG- 158 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT-
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC-
Confidence 8887753 446778888888888899999999988886555567788888888888888 88888998888887764
Q ss_pred CccHhHHHHH
Q 010215 269 HPCVISYSTI 278 (515)
Q Consensus 269 ~~~~~~~~~l 278 (515)
+.+...|..+
T Consensus 159 p~~~~~~~~l 168 (568)
T 2vsy_A 159 VGAVEPFAFL 168 (568)
T ss_dssp CCCSCHHHHT
T ss_pred CcccChHHHh
Confidence 2233444433
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.92 E-value=6.8e-08 Score=88.11 Aligned_cols=167 Identities=13% Similarity=0.075 Sum_probs=112.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHH-
Q 010215 305 PNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNT- 383 (515)
Q Consensus 305 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~- 383 (515)
.+...+..+...+...|++++|...++++.+.. +.+...+..+...|.+.|++++|...++ ..... .|+......
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~-~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLX-TIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCGG--GCSHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHH-hCchh--hcchHHHHHH
Confidence 344556666677777788888888888777654 4456677777777888888888888887 54433 344432222
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 010215 384 MITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCR 463 (515)
Q Consensus 384 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 463 (515)
....+...++.++|+..+++..... +.+...+..+...+...|++++|+ ..+.++.+..+-..+...+..++..+..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~-~~l~~~l~~~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQVGRNEEAL-ELLFGHLRXDLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHH-HHHHHHHhcccccccchHHHHHHHHHHH
Confidence 2223556667777777777777754 445667777777788888888887 7777777643322235667777788888
Q ss_pred cCCHHHHHHHHHHHH
Q 010215 464 ANKCEWAYLLFKEMI 478 (515)
Q Consensus 464 ~g~~~~A~~~~~~m~ 478 (515)
.|+.++|...+++..
T Consensus 268 ~g~~~~a~~~~r~al 282 (287)
T 3qou_A 268 LGTGDALASXYRRQL 282 (287)
T ss_dssp HCTTCHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHH
Confidence 888888877777654
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.91 E-value=1.8e-07 Score=81.88 Aligned_cols=185 Identities=12% Similarity=0.063 Sum_probs=122.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChh---hHH
Q 010215 167 TLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLE-K-NTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAH---TFN 241 (515)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 241 (515)
+...+..+...+.+.|++++|+..|+++.+.... | ....+..+..++.+.|++++|+..|+++....|.+.. ++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3455566678889999999999999999875311 1 1356777889999999999999999996554444433 455
Q ss_pred HHHHHHHc------------------cCChhHHHHHHHHHHhCCCCccH-hHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 010215 242 IFIHGWCK------------------INRVDEAQWTIQEMKGHGCHPCV-ISYSTIIQSYCRQYNFSKVYELLDEMQAQG 302 (515)
Q Consensus 242 ~li~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 302 (515)
.+..++.+ .|++++|...|+++.+.. |+. ..+...... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHH----
Confidence 55555543 456666666666666542 222 222111100 0000000
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHhhchhCC
Q 010215 303 CPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPD---SRFFNCLIYTLGRASRVQEAVYVYQVEMPENG 373 (515)
Q Consensus 303 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 373 (515)
......+...+.+.|++++|...|+++.+.. +.+ ...+..+..+|.+.|+.++|...++ .+...+
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~-~l~~~~ 214 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAK-IIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHH-HHHhhC
Confidence 0112345678889999999999999999863 222 2568888999999999999999998 766653
No 108
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.91 E-value=9.8e-07 Score=80.25 Aligned_cols=233 Identities=10% Similarity=-0.057 Sum_probs=133.5
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHhhcCCCCChhhHHHHHHHH----Hcc---CChhH
Q 010215 185 EDAVRTFDELGTFGLEKNTETMNLLLDTLCKEG--KVELARSVFLELKSCIPPNAHTFNIFIHGW----CKI---NRVDE 255 (515)
Q Consensus 185 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~~~~ 255 (515)
++|++.++.++... +-+...|+.--.++...+ +++++++.++.+....|.+..+|+.-...+ .+. +++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 46666666666532 223444555555555555 566666666664444455555555444333 333 44555
Q ss_pred HHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 256 AQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKI 335 (515)
Q Consensus 256 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 335 (515)
++.+++++.+.. +.+..+|+.-.-.+.+.|.++ .+++++.++++.+
T Consensus 129 EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~---------------------------------~~~EL~~~~~~i~ 174 (306)
T 3dra_A 129 EFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHN---------------------------------DAKELSFVDKVID 174 (306)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTT---------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccC---------------------------------hHHHHHHHHHHHH
Confidence 555555554432 234444544444444444444 0044444444444
Q ss_pred cCCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHH-HHHHHHHHHhCC
Q 010215 336 VGSKPDSRFFNCLIYTLGRASR------VQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEK-AFHVLEEMNKLE 408 (515)
Q Consensus 336 ~~~~~~~~~~~~li~~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~ 408 (515)
.. +-+...|+.-...+.+.+. ++++.+.++ ...... +-|...|+.....+.+.|+... +.++..++.+.+
T Consensus 175 ~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~-~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~ 251 (306)
T 3dra_A 175 TD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVK-DKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE 251 (306)
T ss_dssp HC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHH-HHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG
T ss_pred hC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHH-HHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 33 3334444433333333333 777888887 444332 3478899999888888888554 556777766532
Q ss_pred -CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCC-CHHHHHHHH
Q 010215 409 -HCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSL-DITTYTLVI 458 (515)
Q Consensus 409 -~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p-~~~~~~~li 458 (515)
.-..+...+..+...+.+.|+.++|+ ++++.+.++ ..| ....|+-.+
T Consensus 252 ~~~~~s~~al~~la~~~~~~~~~~~A~-~~~~~l~~~--~Dpir~~yW~~~~ 300 (306)
T 3dra_A 252 KDQVTSSFALETLAKIYTQQKKYNESR-TVYDLLKSK--YNPIRSNFWDYQI 300 (306)
T ss_dssp GTEESCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHT--TCGGGHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHH-HHHHHHHhc--cChHHHHHHHHHH
Confidence 01456788899999999999999999 999999863 334 455565443
No 109
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.88 E-value=9.5e-09 Score=83.64 Aligned_cols=111 Identities=6% Similarity=-0.055 Sum_probs=49.3
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHH
Q 010215 178 FSGAGQWEDAVRTFDELGTFGLEK-NTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEA 256 (515)
Q Consensus 178 ~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 256 (515)
+...|++++|+..+...... .| +...+..+...|.+.|++++|++.|++.....|.+..+|..+..+|.+.|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHH
Confidence 33444445555554444332 11 2223333444455555555555555443333344444455555555555555555
Q ss_pred HHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHH
Q 010215 257 QWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKV 291 (515)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 291 (515)
...|++..+.. +-+..+|..+...|.+.|++++|
T Consensus 85 ~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a 118 (150)
T 4ga2_A 85 VECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGR 118 (150)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHH
Confidence 55554444432 11334444444444444444433
No 110
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.87 E-value=3.2e-07 Score=79.44 Aligned_cols=161 Identities=10% Similarity=0.027 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHhhcCCCCChhhHHHHH
Q 010215 169 NTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEG----KVELARSVFLELKSCIPPNAHTFNIFI 244 (515)
Q Consensus 169 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~li 244 (515)
.++..+...|...+++++|+++|++..+.| ++..+..+...|.. + +.++|..+|++... +.+...+..|.
T Consensus 19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg 92 (212)
T 3rjv_A 19 RAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLA 92 (212)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHH
Confidence 333333444444444444444444444432 33333334444433 3 44444444444211 12334444444
Q ss_pred HHHHc----cCChhHHHHHHHHHHhCCCC-ccHhHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010215 245 HGWCK----INRVDEAQWTIQEMKGHGCH-PCVISYSTIIQSYCR----QYNFSKVYELLDEMQAQGCPPNVVTYTTVMS 315 (515)
Q Consensus 245 ~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 315 (515)
..|.. .+++++|..+|++..+.|.. .+...+..|...|.. .+++++|+++|++..+. ..+...+..+..
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~ 170 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGM 170 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHH
Confidence 44444 44555555555555444310 013444444444444 44455555555554443 112223344444
Q ss_pred HHHhc-C-----CHHHHHHHHHHHHhcC
Q 010215 316 YLAKS-G-----DFEEAIRITEKMKIVG 337 (515)
Q Consensus 316 ~~~~~-g-----~~~~a~~~~~~~~~~~ 337 (515)
.|... | ++++|...++...+.|
T Consensus 171 ~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 171 MFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 44322 1 4555555555554443
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.86 E-value=3.3e-08 Score=91.19 Aligned_cols=97 Identities=9% Similarity=-0.019 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC--CC--CHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC----H
Q 010215 380 TFNTMITMFSHHGHHEKAFHVLEEMNKLEHC--KP--NVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD----I 451 (515)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~----~ 451 (515)
+++.+...|.. |++++|++.|++..+.... .+ ...++..+...+...|++++|+ ..+++..+...-.++ .
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~ 195 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAA-ASLQKEKSMYKEMENYPTCY 195 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHcCChhHHH
Confidence 34444445544 5555555555554431100 00 0234445555555556666555 555555442110111 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010215 452 TTYTLVIHGLCRANKCEWAYLLFKEMI 478 (515)
Q Consensus 452 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 478 (515)
..+..++.++...|++++|...+++..
T Consensus 196 ~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 196 KKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 234444445555566666666665554
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.86 E-value=6.1e-08 Score=97.88 Aligned_cols=154 Identities=8% Similarity=-0.041 Sum_probs=105.5
Q ss_pred CCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010215 147 VRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVF 226 (515)
Q Consensus 147 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 226 (515)
.|++++|.+.|++..+.++.+..++..+...+.+.|++++|++.|++..+.. +.+...+..+..+|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4678888888888888777788888888888888888888888888887753 346777888888888888888888888
Q ss_pred HHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhc---CChhHHHHHHHHHHHCC
Q 010215 227 LELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQ---YNFSKVYELLDEMQAQG 302 (515)
Q Consensus 227 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g 302 (515)
++.....+.+...+..+..+|.+.|++++|.+.|++..+.. +.+...+..+...+... |++++|.+.+++..+.+
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 88555556677788888888888888888888888877653 33566777788888888 88888888888877653
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.86 E-value=5.1e-07 Score=78.13 Aligned_cols=173 Identities=11% Similarity=-0.012 Sum_probs=94.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 010215 291 VYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRAS----RVQEAVYVYQ 366 (515)
Q Consensus 291 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~ 366 (515)
|++.|++..+.| +..++..+...|...+++++|.+.|++..+.| +...+..|...|.. + ++++|...|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444444444432 34444445555555555555555555555433 33444444444444 4 5566666665
Q ss_pred hhchhCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCCC---HHhHHHHHHHHHh----cCChHHHHH
Q 010215 367 VEMPENGVAPDTSTFNTMITMFSH----HGHHEKAFHVLEEMNKLEHCKPN---VQTFHPLLKSCFK----TGKTDECLS 435 (515)
Q Consensus 367 ~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~---~~~~~~ll~~~~~----~g~~~~A~~ 435 (515)
...+. -+...+..+...|.. .+++++|+++|++..+.| |+ ...+..|...|.. .++.++|+
T Consensus 78 -~A~~~---g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~---~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~- 149 (212)
T 3rjv_A 78 -KAVEA---GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS---ESDAAVDAQMLLGLIYASGVHGPEDDVKAS- 149 (212)
T ss_dssp -HHHHT---TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST---TSHHHHHHHHHHHHHHHHTSSSSCCHHHHH-
T ss_pred -HHHHC---CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC---CCcchHHHHHHHHHHHHcCCCCCCCHHHHH-
Confidence 33332 244455555555554 566677777777666644 32 4555566666665 56677776
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 010215 436 QLLDDMVNKHHLSLDITTYTLVIHGLCRA-N-----KCEWAYLLFKEMIGHD 481 (515)
Q Consensus 436 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~~ 481 (515)
..+++..+. ..+...+..|...|... | ++++|.+++++..+.|
T Consensus 150 ~~~~~A~~~---~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 150 EYFKGSSSL---SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHT---SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 677666652 12334455555555543 2 6777777777776654
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.85 E-value=4.7e-08 Score=90.20 Aligned_cols=154 Identities=14% Similarity=0.072 Sum_probs=82.3
Q ss_pred HHHHcCCHHHHHHHHHHhhc---CCC---CChhhHHHHHHHHHccCChhHHHHHHHHHHhC----CCCc-cHhHHHHHHH
Q 010215 212 TLCKEGKVELARSVFLELKS---CIP---PNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH----GCHP-CVISYSTIIQ 280 (515)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~---~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~ 280 (515)
.|...|++++|...|.+... ... .-..+|+.+...|.+.|++++|...|++..+. |-.. ...+++.+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555555555554211 000 01235556666666677777777776665432 1110 1345666666
Q ss_pred HHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCC-HHHHHHHHH
Q 010215 281 SYCRQYNFSKVYELLDEMQAQ----GCPP-NVVTYTTVMSYLAKSGDFEEAIRITEKMKIVG----SKPD-SRFFNCLIY 350 (515)
Q Consensus 281 ~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~-~~~~~~li~ 350 (515)
.|.. |++++|++.|++..+. |-.+ ...++..+...+.+.|++++|+..+++..+.. ..+. ...+..+..
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 6666 7777777777765542 1000 13456666667777777777777777665421 1111 124444555
Q ss_pred HHHhcCCHHHHHHHHH
Q 010215 351 TLGRASRVQEAVYVYQ 366 (515)
Q Consensus 351 ~~~~~g~~~~A~~~~~ 366 (515)
.+...|++++|...|+
T Consensus 204 ~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH
Confidence 5556667777776666
No 115
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.84 E-value=1.6e-05 Score=77.99 Aligned_cols=372 Identities=10% Similarity=-0.029 Sum_probs=198.2
Q ss_pred CHHHHHHHHHHhh-hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCC-hHHHHHHHHHHhc---CCCCCHHHHHH
Q 010215 99 SHYLVNKLIHRFK-DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQ-MDQMRALLEEMSK---GHIVTLNTIAK 173 (515)
Q Consensus 99 ~~~~~~~ll~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~~~~ 173 (515)
-...|...+..+- ++.+.+..+|+.+... .|++..|...++...+.+. .+....+|+.... .++.+......
T Consensus 14 aR~vyer~l~~~P~~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~ 90 (493)
T 2uy1_A 14 PSAIMEHARRLYMSKDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE 90 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 4556666666665 5777888888887532 3577888887777766663 3556667776654 23444444433
Q ss_pred HHHHHH----hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc
Q 010215 174 VMRRFS----GAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCK 249 (515)
Q Consensus 174 li~~~~----~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 249 (515)
.+..+. .+++.+.+.++|++........-...|...... ........+.++..+.
T Consensus 91 Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~-------------------- 149 (493)
T 2uy1_A 91 YIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDT-------------------- 149 (493)
T ss_dssp HHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHH--------------------
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHH--------------------
Confidence 333322 235567777788777763211111222222111 1111122222222211
Q ss_pred cCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCC-------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010215 250 INRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYN-------FSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGD 322 (515)
Q Consensus 250 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 322 (515)
.+.+..|..+++.+...--..+...|...+..-...+. .+.+..+|+++... .+.+...|...+..+.+.|+
T Consensus 150 ~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~ 228 (493)
T 2uy1_A 150 LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQ 228 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCC
Confidence 01223333333333221000123345444443222110 23456677777664 23456677777777777888
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHhhchhCC-----C---CCCHHHHHHHHHHHHhCCC
Q 010215 323 FEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEA-VYVYQVEMPENG-----V---APDTSTFNTMITMFSHHGH 393 (515)
Q Consensus 323 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~~~~~-----~---~~~~~~~~~li~~~~~~g~ 393 (515)
.+.|..++++..+. +.+...+. .|+.....++. ..+.+ ...... . ......|...+....+.++
T Consensus 229 ~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~ 301 (493)
T 2uy1_A 229 KEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKR-KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRG 301 (493)
T ss_dssp HHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHH-HTC----------CHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHH-HHHhhccchhhhhcccccHHHHHHHHHHHHHcCC
Confidence 88888888888776 33332222 22221111111 11221 110000 0 0112456666666667778
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHh-cCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010215 394 HEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFK-TGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYL 472 (515)
Q Consensus 394 ~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 472 (515)
.+.|..+|++. +.. ..+...|......-.. .++.+.|. .+|+...+.++- ++..|...++...+.|+.+.|..
T Consensus 302 ~~~AR~i~~~A-~~~--~~~~~v~i~~A~lE~~~~~d~~~ar-~ife~al~~~~~--~~~~~~~yid~e~~~~~~~~aR~ 375 (493)
T 2uy1_A 302 LELFRKLFIEL-GNE--GVGPHVFIYCAFIEYYATGSRATPY-NIFSSGLLKHPD--STLLKEEFFLFLLRIGDEENARA 375 (493)
T ss_dssp HHHHHHHHHHH-TTS--CCCHHHHHHHHHHHHHHHCCSHHHH-HHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHh-hCC--CCChHHHHHHHHHHHHHCCChHHHH-HHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHH
Confidence 88999999888 322 2344444322222222 33688887 888888885543 34556777887888899999998
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010215 473 LFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMK 513 (515)
Q Consensus 473 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 513 (515)
+|+++. .....|...+.-=...|+.+.+.++++...
T Consensus 376 l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 376 LFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 888872 245667777665577788888888777654
No 116
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.82 E-value=9.9e-07 Score=80.65 Aligned_cols=163 Identities=9% Similarity=-0.004 Sum_probs=86.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---CCC--HH
Q 010215 136 IYEMMVDILGKVRQMDQMRALLEEMSKGHIVTL------NTIAKVMRRFSGAGQWEDAVRTFDELGTFGL---EKN--TE 204 (515)
Q Consensus 136 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~~~--~~ 204 (515)
.+...+..+...|++++|.+.+++......... ..+..+...+...|++++|++.|++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344455666777777777777776655433222 1122344455566677777777666654211 111 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhh---cCCCCC----hhhHHHHHHHHHccCChhHHHHHHHHHHhCC----CCc-cH
Q 010215 205 TMNLLLDTLCKEGKVELARSVFLELK---SCIPPN----AHTFNIFIHGWCKINRVDEAQWTIQEMKGHG----CHP-CV 272 (515)
Q Consensus 205 ~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~ 272 (515)
+++.+...|...|++++|...|++.. ...+.+ ..+++.+...|.+.|++++|...+++..+.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 55666666666666666666666522 111111 1355556666666666666666666554321 000 13
Q ss_pred hHHHHHHHHHHhcCChhHH-HHHHHHH
Q 010215 273 ISYSTIIQSYCRQYNFSKV-YELLDEM 298 (515)
Q Consensus 273 ~~~~~li~~~~~~g~~~~A-~~~~~~m 298 (515)
.+|..+...|.+.|++++| ...+++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 4455555556666666665 4444443
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.77 E-value=8.1e-07 Score=81.20 Aligned_cols=195 Identities=9% Similarity=0.027 Sum_probs=93.7
Q ss_pred CcCCHHHHHHHHHHhhhCHHHHHHHHHHhccCCCCCCCHHH---HHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHH---
Q 010215 96 IQPSHYLVNKLIHRFKDDWKSALGIFRWAGSCPGYEHSSEI---YEMMVDILGKVRQMDQMRALLEEMSKGHIVTLN--- 169 (515)
Q Consensus 96 ~~p~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--- 169 (515)
..|+..++..+...+.-+++. ++..- ...+... +...+..+...|++++|.+++++..........
T Consensus 42 ~~~~~~~l~~i~~~l~~~~~~---~~~~~-----~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~ 113 (293)
T 3u3w_A 42 VYPSMDILQGIAAKLQIPIIH---FYEVL-----IYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQ 113 (293)
T ss_dssp CCCCHHHHHHHHHHHTCCTHH---HHHTT-----TSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred CCCCHHHHHHHHHHhCcCHHH---HhCCC-----CCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHH
Confidence 457777776666665433221 11111 1112222 223356666777777777777776654433222
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CC---CC
Q 010215 170 ---TIAKVMRRFSGAGQWEDAVRTFDELGTFGLE-KN----TETMNLLLDTLCKEGKVELARSVFLELKS---CI---PP 235 (515)
Q Consensus 170 ---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~---~~ 235 (515)
.+..+...+...|++++|++.|++..+.... ++ ..+++.+...|...|++++|...|++... .. .+
T Consensus 114 ~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 193 (293)
T 3u3w_A 114 FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEE 193 (293)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchh
Confidence 1223444555556667777777666653211 12 22456666666666666666666655321 01 11
Q ss_pred -ChhhHHHHHHHHHccCChhHHHHHHHHHHhC----CCCcc-HhHHHHHHHHHHhcCC-hhHHHHHHHHH
Q 010215 236 -NAHTFNIFIHGWCKINRVDEAQWTIQEMKGH----GCHPC-VISYSTIIQSYCRQYN-FSKVYELLDEM 298 (515)
Q Consensus 236 -~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~-~~~A~~~~~~m 298 (515)
...++..+...|.+.|++++|...+++..+. +..+. ..+|..+..+|.+.|+ +++|++.+++.
T Consensus 194 ~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 1224445555555555555555555544321 11111 3344444445555552 34555444443
No 118
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.75 E-value=2.6e-07 Score=72.40 Aligned_cols=111 Identities=9% Similarity=-0.069 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010215 134 SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTL 213 (515)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 213 (515)
...+....+.|.+.|++++|++.|++..+.++.+..++..+..+|.+.|++++|++.|++..+.. +.+...|..+..++
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 34566667777778888888888887777777777777777777777888888888777777653 34566777777777
Q ss_pred HHcCCHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 010215 214 CKEGKVELARSVFLELKSCIPPNAHTFNIFIH 245 (515)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 245 (515)
...|++++|.+.|++..+..|.+..++..|..
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 77777777777777754444555555555443
No 119
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.73 E-value=3.5e-07 Score=75.37 Aligned_cols=126 Identities=7% Similarity=-0.056 Sum_probs=63.2
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 010215 136 IYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCK 215 (515)
Q Consensus 136 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 215 (515)
.+..+...+...|++++|...|+.....++.+..++..+...+...|++++|++.|++..+.. +.+...+..+..++..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 344455555556666666666666555555555555555555555556666655555555432 2244455555555555
Q ss_pred cCCHHHHHHHHHHhhcCCCCChhhHHHH--HHHHHccCChhHHHHHHHH
Q 010215 216 EGKVELARSVFLELKSCIPPNAHTFNIF--IHGWCKINRVDEAQWTIQE 262 (515)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l--i~~~~~~g~~~~A~~~~~~ 262 (515)
.|++++|...+++.....+.+...+..+ +..+.+.|++++|...+..
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 5555555555555333233333333222 2223444444444444443
No 120
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.72 E-value=2.4e-05 Score=76.80 Aligned_cols=365 Identities=8% Similarity=-0.031 Sum_probs=204.7
Q ss_pred hHHHHHHHhcCCCC--HHHHHHHhhccccCCCCcCCHHHHHHHHHHhhh---CHHHHHHHHHHhccCCCC-CCCHHHHHH
Q 010215 66 DIDVIISKVHVGSS--EDEVFQSLKQDHVCNAIQPSHYLVNKLIHRFKD---DWKSALGIFRWAGSCPGY-EHSSEIYEM 139 (515)
Q Consensus 66 ~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~g~~p~~~~~~~ll~~~~~---~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 139 (515)
.|...+.....+.. ...+|++... ..|+...|..-+.-..+ ..+....+|+.+....|. +.+...|..
T Consensus 17 vyer~l~~~P~~~~e~~~~iferal~------~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~ 90 (493)
T 2uy1_A 17 IMEHARRLYMSKDYRSLESLFGRCLK------KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE 90 (493)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHST------TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHhc------cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 45666654432222 2336666543 34799999888876542 234456677777654453 347788999
Q ss_pred HHHHHHc----CCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 010215 140 MVDILGK----VRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCK 215 (515)
Q Consensus 140 li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 215 (515)
.+..+.. .|+++.++++|+............+-.....+.+......+..+..+..
T Consensus 91 Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~-------------------- 150 (493)
T 2uy1_A 91 YIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTL-------------------- 150 (493)
T ss_dssp HHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHH--------------------
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHh--------------------
Confidence 8887753 4678899999999987322333322111111111222222222222211
Q ss_pred cCCHHHHHHHHHHhhcCCC-CChhhHHHHHHHHHccC--C-----hhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCC
Q 010215 216 EGKVELARSVFLELKSCIP-PNAHTFNIFIHGWCKIN--R-----VDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYN 287 (515)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 287 (515)
+.+..|..+++.+....+ .+...|...+..-...+ - .+.+..+|+++.... +.+...|...+..+.+.|+
T Consensus 151 -~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~ 228 (493)
T 2uy1_A 151 -PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQ 228 (493)
T ss_dssp -HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCC
Confidence 123334444433221111 13344555444322211 0 234566777776642 4456677777777777888
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---------C---CCCHHHHHHHHHHHHhc
Q 010215 288 FSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVG---------S---KPDSRFFNCLIYTLGRA 355 (515)
Q Consensus 288 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---------~---~~~~~~~~~li~~~~~~ 355 (515)
.++|.+++++.... +.+...+. .|+...+.++. ++.+.+.- . .....+|...+..+.+.
T Consensus 229 ~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~ 299 (493)
T 2uy1_A 229 KEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKK 299 (493)
T ss_dssp HHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHc
Confidence 88888888887776 22222221 22222111111 22222110 0 11124566666666677
Q ss_pred CCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHH
Q 010215 356 SRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSH-HGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECL 434 (515)
Q Consensus 356 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 434 (515)
++.+.|..+|+ ..... ..+...|......-.. .++.+.|..+|+...+.. +-+...+...++-..+.|+.+.|.
T Consensus 300 ~~~~~AR~i~~-~A~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR 374 (493)
T 2uy1_A 300 RGLELFRKLFI-ELGNE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENAR 374 (493)
T ss_dssp HCHHHHHHHHH-HHTTS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCHHHHHHHHH-HhhCC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 88999999998 55222 2244444432222222 336999999999998853 223444556677677889999987
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 435 SQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 435 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 479 (515)
.+|+... .....|...+..-...|+.+.+.++++++.+
T Consensus 375 -~l~er~~------k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 375 -ALFKRLE------KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp -HHHHHSC------CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -HHHHHHH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888762 2577899888888888999999998888764
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.72 E-value=8.7e-07 Score=76.56 Aligned_cols=123 Identities=11% Similarity=-0.008 Sum_probs=72.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChh
Q 010215 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVD 254 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 254 (515)
...+...|++++|++.|++.. .|+...+..+...+...|++++|...|++.....+.+...+..+..+|.+.|+++
T Consensus 13 g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 13 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHH
Confidence 445555666666666665542 3455566666666666666666666666643334455566666666666666666
Q ss_pred HHHHHHHHHHhCCCC--------------c-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 010215 255 EAQWTIQEMKGHGCH--------------P-CVISYSTIIQSYCRQYNFSKVYELLDEMQAQ 301 (515)
Q Consensus 255 ~A~~~~~~~~~~~~~--------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 301 (515)
+|...|++..+.... | ....|..+..++...|++++|.+.|++..+.
T Consensus 89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 666666666553210 1 1245666666677777777777777766654
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.71 E-value=1.3e-06 Score=75.36 Aligned_cols=128 Identities=7% Similarity=-0.087 Sum_probs=102.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 010215 136 IYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCK 215 (515)
Q Consensus 136 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 215 (515)
.+..+...+.+.|++++|...|++... ++..++..+...|.+.|++++|++.|++..+.. +.+...+..+..++..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSS---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 455667778888999999998887742 366778888888889999999999998887754 4567788888888999
Q ss_pred cCCHHHHHHHHHHhhcCCCCCh----------------hhHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 010215 216 EGKVELARSVFLELKSCIPPNA----------------HTFNIFIHGWCKINRVDEAQWTIQEMKGHG 267 (515)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 267 (515)
.|++++|...|++.....+.+. .++..+..+|.+.|++++|...|++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999988555444443 788889999999999999999999988764
No 123
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.70 E-value=8.1e-07 Score=78.93 Aligned_cols=197 Identities=7% Similarity=-0.082 Sum_probs=136.1
Q ss_pred cCCChHHHHHHHHHHhcCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHhhCCCCCC----------------
Q 010215 146 KVRQMDQMRALLEEMSKGHIVTLNTIAKV-------MRRFSGAGQWEDAVRTFDELGTFGLEKN---------------- 202 (515)
Q Consensus 146 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~~~---------------- 202 (515)
..++...|.+.|.++.+.++....++..+ ...+.+.++..+++..+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 57899999999999999888888888665 3445555555555555554443 1221
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCcc--HhH
Q 010215 203 ------TETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPC--VIS 274 (515)
Q Consensus 203 ------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~ 274 (515)
......+...+...|++++|.++|+.+....|.+. ....+...+.+.+++++|+..|+...... .|. ...
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 22334566778888999999999988665444344 66777778888999999999998655432 111 236
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 010215 275 YSTIIQSYCRQYNFSKVYELLDEMQAQGCPPN--VVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCL 348 (515)
Q Consensus 275 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 348 (515)
+..+..++...|++++|++.|++.......|. .........++.+.|+.++|...|+++.... |+...+..|
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL 247 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHH
Confidence 77788888889999999999988875433243 3355666777788899999999999888763 444444433
No 124
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.70 E-value=5.4e-07 Score=69.97 Aligned_cols=113 Identities=12% Similarity=0.106 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010215 134 SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTL 213 (515)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 213 (515)
...+..+...+.+.|++++|.+.|+++...++.+..++..+...+.+.|++++|+..|+++.+.. +.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 45566666666667777777777766666555556666666666666666666666666665542 33455555666666
Q ss_pred HHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 010215 214 CKEGKVELARSVFLELKSCIPPNAHTFNIFIHGW 247 (515)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 247 (515)
...|++++|...++++....+.+...+..+...+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 6666666666666654333344444444444443
No 125
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.70 E-value=1.3e-06 Score=79.95 Aligned_cols=162 Identities=11% Similarity=0.072 Sum_probs=86.3
Q ss_pred HHHHHccCChhHHHHHHHHHHhCC-CCccH----hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 010215 244 IHGWCKINRVDEAQWTIQEMKGHG-CHPCV----ISYSTIIQSYCRQYNFSKVYELLDEMQAQGCP-PN----VVTYTTV 313 (515)
Q Consensus 244 i~~~~~~g~~~~A~~~~~~~~~~~-~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~l 313 (515)
+..+...|++++|...+++..+.. ..|+. ..+..+...+...+++++|++.+++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 455666666777776666665532 11221 12233455555566777777777776653211 12 2246666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc-----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhhch---hCCCCCC-HHHHHH
Q 010215 314 MSYLAKSGDFEEAIRITEKMKIV-----GSKP-DSRFFNCLIYTLGRASRVQEAVYVYQVEMP---ENGVAPD-TSTFNT 383 (515)
Q Consensus 314 i~~~~~~g~~~~a~~~~~~~~~~-----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~-~~~~~~ 383 (515)
...|...|++++|...++++.+. +..+ ...++..+...|.+.|++++|...++..+. ..+..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 66777777777777777666531 1111 122455566666666666666666652111 1111111 445666
Q ss_pred HHHHHHhCCC-HHHHHHHHHHHH
Q 010215 384 MITMFSHHGH-HEKAFHVLEEMN 405 (515)
Q Consensus 384 li~~~~~~g~-~~~A~~~~~~m~ 405 (515)
+..+|.+.|+ +++|.+.+++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 6666666663 466666666554
No 126
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.70 E-value=1.2e-05 Score=73.99 Aligned_cols=171 Identities=11% Similarity=0.003 Sum_probs=96.4
Q ss_pred CCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc-C-CHHHHH
Q 010215 147 VRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAG-QWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKE-G-KVELAR 223 (515)
Q Consensus 147 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~-~-~~~~a~ 223 (515)
.+..++|+++++.+...++....+.+.--..+...| .+++++++++.+.... +-+..+|+.-..++... + +.++++
T Consensus 67 ~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 344456777777777766666666555445555555 4677777777766643 33555565555555554 5 566666
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHHccCChh--------HHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCC-------h
Q 010215 224 SVFLELKSCIPPNAHTFNIFIHGWCKINRVD--------EAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYN-------F 288 (515)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~ 288 (515)
++++.+....+.|..+|+.-.-.+.+.|.++ ++++.++++.+.. +-|...|+.....+.+.++ +
T Consensus 146 ~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 146 EYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHH
Confidence 6666655555666666665555555555444 6666666666543 2355566665555555554 4
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010215 289 SKVYELLDEMQAQGCPPNVVTYTTVMSYLAKS 320 (515)
Q Consensus 289 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 320 (515)
+++++.++++.... +-|...|+.+-..+.+.
T Consensus 225 ~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~ 255 (349)
T 3q7a_A 225 QDELIYILKSIHLI-PHNVSAWNYLRGFLKHF 255 (349)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 55555555555442 22444454444433333
No 127
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.70 E-value=9.4e-07 Score=80.79 Aligned_cols=169 Identities=9% Similarity=0.029 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHhhchhCC---CCCC--
Q 010215 308 VTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDS-----RFFNCLIYTLGRASRVQEAVYVYQVEMPENG---VAPD-- 377 (515)
Q Consensus 308 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~-- 377 (515)
..+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...++ ...... ..+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~-~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELK-KLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH-HHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHH-HHHHHHhcCCchHHH
Confidence 34455666777788888888888777664322111 123334455666777888877776 332211 1111
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC-----HHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCC---
Q 010215 378 TSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPN-----VQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSL--- 449 (515)
Q Consensus 378 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p--- 449 (515)
..+|+.+...|...|++++|+..|++..+.....|+ ..++..+...|...|++++|+ .++++..+...-..
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al-~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESL-YQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHH-HHHHHHHHHHHhcCcHH
Confidence 346777777777778888888888777621001122 146667777777777777777 77777766321000
Q ss_pred -CHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 010215 450 -DITTYTLVIHGLCRANKCEWA-YLLFKEMI 478 (515)
Q Consensus 450 -~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 478 (515)
-..+|..+...|.+.|++++| ...+++..
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 045666777777777777777 66666654
No 128
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.69 E-value=4e-07 Score=71.80 Aligned_cols=120 Identities=7% Similarity=-0.097 Sum_probs=81.5
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 010215 131 EHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLL 210 (515)
Q Consensus 131 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 210 (515)
+.+...+..+...+.+.|++++|...|++....++.+..++..+...+...|++++|++.|++..+.. +.+...+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 44566777777777788888888888887777777677777777777777777777777777776643 33566666677
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccC
Q 010215 211 DTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKIN 251 (515)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 251 (515)
.++...|++++|.+.|++.....+.+...+..+..++.+.|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 77777777777777777644333444555555555554443
No 129
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.68 E-value=3.6e-07 Score=71.72 Aligned_cols=119 Identities=11% Similarity=0.006 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 010215 133 SSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDT 212 (515)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 212 (515)
+...+..+...+...|++++|...|++....++.+..++..+...+...|++++|++.+++..+.. +.+...+..+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 344555666666666677777776666666555556666666666666666666666666665542 2345555556666
Q ss_pred HHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCC
Q 010215 213 LCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINR 252 (515)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 252 (515)
+...|++++|...+++.....+.+...+..+..++.+.|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 6666666666666665433334455555555555555544
No 130
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.66 E-value=2.6e-07 Score=83.84 Aligned_cols=94 Identities=9% Similarity=-0.080 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010215 134 SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTL 213 (515)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 213 (515)
...+..+...+.+.|++++|...|++....++.+...+..+...|.+.|++++|++.+++..+.. +.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 44455555555555555556555555555555555555555555555555555555555555432 22444455555555
Q ss_pred HHcCCHHHHHHHHHH
Q 010215 214 CKEGKVELARSVFLE 228 (515)
Q Consensus 214 ~~~~~~~~a~~~~~~ 228 (515)
...|++++|...|.+
T Consensus 83 ~~~g~~~~A~~~~~~ 97 (281)
T 2c2l_A 83 LEMESYDEAIANLQR 97 (281)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 555555555555544
No 131
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.65 E-value=9.3e-07 Score=72.77 Aligned_cols=126 Identities=6% Similarity=-0.070 Sum_probs=70.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcc
Q 010215 171 IAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKI 250 (515)
Q Consensus 171 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 250 (515)
+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++.....+.+...+..+..++.+.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 3444556666666666666666665542 335556666666666666666666666664443445555666666666666
Q ss_pred CChhHHHHHHHHHHhCCCCccHhHHHH--HHHHHHhcCChhHHHHHHHHH
Q 010215 251 NRVDEAQWTIQEMKGHGCHPCVISYST--IIQSYCRQYNFSKVYELLDEM 298 (515)
Q Consensus 251 g~~~~A~~~~~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m 298 (515)
|++++|...|++..+.. +.+...+.. +...+...|++++|++.+...
T Consensus 95 ~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 95 GKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 66666666666655442 112333322 222244555555655555543
No 132
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.64 E-value=5.7e-05 Score=69.45 Aligned_cols=222 Identities=10% Similarity=-0.001 Sum_probs=155.1
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcc-C-ChhH
Q 010215 179 SGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEG-KVELARSVFLELKSCIPPNAHTFNIFIHGWCKI-N-RVDE 255 (515)
Q Consensus 179 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~ 255 (515)
.+.+..++|+++++.+.... +-+..+|+.--..+...| .+++++..++.+....|.+..+|+.-...+.+. + ++++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHH
Confidence 33455578999999998864 346667787777788888 599999999998777888999999888888777 7 8999
Q ss_pred HHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChh--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----
Q 010215 256 AQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFS--------KVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGD----- 322 (515)
Q Consensus 256 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----- 322 (515)
++++++++.+.. +.|..+|+.-.-.+.+.|.++ ++++.++++.+.... |..+|+.....+.+.++
T Consensus 144 EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 144 EIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccch
Confidence 999999998875 457888887766666666666 899999998887544 77888888777777775
Q ss_pred --HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHhhchhCC-----CC
Q 010215 323 --FEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRV--------------------QEAVYVYQVEMPENG-----VA 375 (515)
Q Consensus 323 --~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~~~~~~-----~~ 375 (515)
++++++.++++.... +-|...|+-+-..+.+.|+. .+...... .+...+ -.
T Consensus 222 ~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 299 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGF-PMPSDPLPEDTPL 299 (349)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------C-CCCC-CCCSSCCS
T ss_pred HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHH-HHHhcccccccCC
Confidence 678888888887764 56777777766666655543 12222222 222211 02
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010215 376 PDTSTFNTMITMFSHHGHHEKAFHVLEEMN 405 (515)
Q Consensus 376 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 405 (515)
++...+..++..|...|+.++|.++++.+.
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 345555555666666666666666666654
No 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.63 E-value=6.4e-08 Score=78.41 Aligned_cols=103 Identities=12% Similarity=-0.029 Sum_probs=62.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHH
Q 010215 163 GHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNI 242 (515)
Q Consensus 163 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 242 (515)
.++.+..++..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|++.....|.+...|..
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 344445555556666666666666666666666542 3355666666666666666666666666644444555666666
Q ss_pred HHHHHHccCChhHHHHHHHHHHhC
Q 010215 243 FIHGWCKINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 243 li~~~~~~g~~~~A~~~~~~~~~~ 266 (515)
+..+|.+.|++++|...|++..+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666666666554
No 134
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.61 E-value=5.9e-07 Score=70.35 Aligned_cols=96 Identities=10% Similarity=-0.039 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc
Q 010215 170 TIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCK 249 (515)
Q Consensus 170 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 249 (515)
.+......|.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..|++.....+.+...|..+..+|..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 33344555555555555555555555432 23455555555555555555555555555333334445555555555555
Q ss_pred cCChhHHHHHHHHHHhC
Q 010215 250 INRVDEAQWTIQEMKGH 266 (515)
Q Consensus 250 ~g~~~~A~~~~~~~~~~ 266 (515)
.|++++|.+.|++..+.
T Consensus 94 ~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 94 MREWSKAQRAYEDALQV 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 55555555555555443
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.60 E-value=2e-07 Score=78.02 Aligned_cols=121 Identities=7% Similarity=0.015 Sum_probs=75.3
Q ss_pred HcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHHcCCH--HH
Q 010215 145 GKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDT-LCKEGKV--EL 221 (515)
Q Consensus 145 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~-~~~~~~~--~~ 221 (515)
...|++++|...|+.....++.+..++..+...|...|++++|+..|++..+.. +.+...+..+..+ +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 345666777777777666666666666666777777777777777777766543 2355556666666 5566666 67
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 010215 222 ARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 266 (515)
|...+++.....|.+...+..+...|...|++++|...|++..+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777766644444555666666666666667777777766666654
No 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.60 E-value=4.3e-07 Score=82.44 Aligned_cols=97 Identities=10% Similarity=-0.067 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 010215 168 LNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGW 247 (515)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 247 (515)
...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...+++.....+.+...+..+..+|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3444555666666677777777666666542 225566666666666666666666666665544555566666666666
Q ss_pred HccCChhHHHHHHHHHHh
Q 010215 248 CKINRVDEAQWTIQEMKG 265 (515)
Q Consensus 248 ~~~g~~~~A~~~~~~~~~ 265 (515)
...|++++|...|++..+
T Consensus 83 ~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666666554
No 137
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.59 E-value=2.2e-07 Score=75.24 Aligned_cols=106 Identities=13% Similarity=0.004 Sum_probs=51.4
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChh
Q 010215 159 EMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAH 238 (515)
Q Consensus 159 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 238 (515)
.+...++.+...+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|...|++.....|.+..
T Consensus 12 ~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 90 (148)
T 2vgx_A 12 MLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPR 90 (148)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH
T ss_pred HHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch
Confidence 3333333344444444455555555555555555554432 224444455555555555555555555553333344444
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHh
Q 010215 239 TFNIFIHGWCKINRVDEAQWTIQEMKG 265 (515)
Q Consensus 239 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 265 (515)
.+..+..+|...|++++|...|++..+
T Consensus 91 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 91 FPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555555555443
No 138
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.58 E-value=7.4e-07 Score=76.24 Aligned_cols=131 Identities=8% Similarity=-0.035 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhc------CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC----CCCc--c
Q 010215 204 ETMNLLLDTLCKEGKVELARSVFLELKS------CIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH----GCHP--C 271 (515)
Q Consensus 204 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~--~ 271 (515)
..+..+...+...|++++|...+++... ..+....++..+...|...|++++|...+++..+. +-.+ .
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 3444444444444444444444444211 01112234444555555555555555555544321 1011 1
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010215 272 VISYSTIIQSYCRQYNFSKVYELLDEMQAQ----GCPP-NVVTYTTVMSYLAKSGDFEEAIRITEKMK 334 (515)
Q Consensus 272 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 334 (515)
...+..+...+...|++++|.+.+++.... +... -..++..+...+...|++++|.+.+++..
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 233455555555556666666555554421 1000 01223445555555666666665555544
No 139
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.58 E-value=2.1e-06 Score=66.54 Aligned_cols=95 Identities=16% Similarity=0.136 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHh
Q 010215 205 TMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCR 284 (515)
Q Consensus 205 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 284 (515)
.+..+...+...|++++|.+.++++....+.+..++..+...+.+.|++++|...++++.+.. +.+..++..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Confidence 333344444444444444444444322223334444444444444444444444444444332 2233444444455555
Q ss_pred cCChhHHHHHHHHHHH
Q 010215 285 QYNFSKVYELLDEMQA 300 (515)
Q Consensus 285 ~g~~~~A~~~~~~m~~ 300 (515)
.|++++|.+.++++.+
T Consensus 90 ~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 90 QGDYDEAIEYYQKALE 105 (125)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH
Confidence 5555555555554444
No 140
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.55 E-value=1.5e-06 Score=68.37 Aligned_cols=98 Identities=11% Similarity=-0.012 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 010215 167 TLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHG 246 (515)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 246 (515)
+..++..+...+.+.|++++|++.|++..+.. +.+...+..+...+...|++++|...+++.....+.+...+..+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34444444555555555555555555554432 22444455555555555555555555555333333444455555555
Q ss_pred HHccCChhHHHHHHHHHHh
Q 010215 247 WCKINRVDEAQWTIQEMKG 265 (515)
Q Consensus 247 ~~~~g~~~~A~~~~~~~~~ 265 (515)
+.+.|++++|...|++..+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555443
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.55 E-value=8e-08 Score=89.74 Aligned_cols=142 Identities=8% Similarity=-0.040 Sum_probs=74.6
Q ss_pred ChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--------------HHHHHHHHHHHH
Q 010215 149 QMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKN--------------TETMNLLLDTLC 214 (515)
Q Consensus 149 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--------------~~~~~~ll~~~~ 214 (515)
++++|...|+.....++.....+..+...|.+.|++++|+..|++..+...... ...|..+..+|.
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 207 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL 207 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444433332222233344555566667777777777777777665421111 345555555555
Q ss_pred HcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHH
Q 010215 215 KEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKV 291 (515)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 291 (515)
+.|++++|+..+++.....|.+...+..+..+|...|++++|...|++..+.. +.+...+..+..++.+.|+.++|
T Consensus 208 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 208 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 55666666665555433344455555555555555555555555555555432 22344555555555555555555
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.55 E-value=9.4e-06 Score=72.11 Aligned_cols=137 Identities=6% Similarity=-0.078 Sum_probs=87.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC--HHhHHHHHH
Q 010215 345 FNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPN--VQTFHPLLK 422 (515)
Q Consensus 345 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~ll~ 422 (515)
.-.+...+...|++++|.++|. .+... .|+......+...+.+.+++++|+..|+...... .|. ...+..+..
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~-~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALE-AAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP--DKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHT-SSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHH-HHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC--CcccHHHHHHHHHH
Confidence 3445566777788888888887 55443 2444355555566777888888888887554421 121 235666777
Q ss_pred HHHhcCChHHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 010215 423 SCFKTGKTDECLSQLLDDMVNKHHLSLD--ITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCR 490 (515)
Q Consensus 423 ~~~~~g~~~~A~~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 490 (515)
++...|++++|+ ..|++... ....|. .........++.+.|+.++|...|+++.. ..|+...+.
T Consensus 180 al~~LG~~~eAl-~~l~~a~~-g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~~~~~~ 245 (282)
T 4f3v_A 180 AAANLALFTEAE-RRLTEAND-SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPEPKVAA 245 (282)
T ss_dssp HHHHTTCHHHHH-HHHHHHHT-STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCCHHHHH
T ss_pred HHHHCCCHHHHH-HHHHHHhc-CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHHHHH
Confidence 778888888887 77777764 222243 33455566777788888888888888876 445533333
No 143
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.54 E-value=2.6e-06 Score=66.67 Aligned_cols=116 Identities=10% Similarity=-0.042 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc
Q 010215 170 TIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCK 249 (515)
Q Consensus 170 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 249 (515)
.+..+...+...|++++|++.|++..+.. +.+...+..+...+...|++++|...++......+.+...+..+...+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence 33444555555566666666665555432 22445555555555555555555555555333334445555555555555
Q ss_pred cCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCC
Q 010215 250 INRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYN 287 (515)
Q Consensus 250 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 287 (515)
.|++++|...|++..+.. +.+...+..+..++...|+
T Consensus 93 ~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 555555555555554432 1233444444444444443
No 144
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.53 E-value=3.9e-06 Score=64.23 Aligned_cols=108 Identities=10% Similarity=-0.060 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 010215 135 EIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLC 214 (515)
Q Consensus 135 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 214 (515)
..+..+...+...|++++|...|+.....++.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 4455556666666666666666666665555555566556666666666666666666655542 224555555555666
Q ss_pred HcCCHHHHHHHHHHhhcCCCCChhhHHHH
Q 010215 215 KEGKVELARSVFLELKSCIPPNAHTFNIF 243 (515)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 243 (515)
..|++++|...++......+.+...+..+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 112 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGL 112 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 66666666666655443334444444333
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.52 E-value=1.3e-06 Score=81.52 Aligned_cols=131 Identities=13% Similarity=0.030 Sum_probs=115.1
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010215 133 SSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVT---------------LNTIAKVMRRFSGAGQWEDAVRTFDELGTF 197 (515)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 197 (515)
+...+..+...|.+.|++++|...|++....++.+ ..++..+..+|.+.|++++|+..|++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45678889999999999999999999998877765 688889999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHH-HHHHHHHH
Q 010215 198 GLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEA-QWTIQEMK 264 (515)
Q Consensus 198 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~ 264 (515)
. +.+...+..+..+|...|++++|+..|++.....|.+..++..+..++.+.|+.++| ...++.|.
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 457889999999999999999999999997666677889999999999999999988 45666664
No 146
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.52 E-value=7e-07 Score=74.70 Aligned_cols=121 Identities=10% Similarity=0.073 Sum_probs=85.6
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHH-HHccCCh--hH
Q 010215 179 SGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHG-WCKINRV--DE 255 (515)
Q Consensus 179 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~~ 255 (515)
...|++++|+..+++..+.. +.+...+..+...|...|++++|...|++.....+.+...+..+..+ +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 44677777888887776653 44677777788888888888888888887554445667777777777 6677887 88
Q ss_pred HHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 010215 256 AQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQ 301 (515)
Q Consensus 256 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 301 (515)
|...|++..+.. +.+...|..+...+...|++++|+..|++..+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 888888877653 334667777777888888888888888887765
No 147
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.52 E-value=1.1e-06 Score=75.04 Aligned_cols=120 Identities=16% Similarity=0.055 Sum_probs=58.0
Q ss_pred HcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC----CCC-ccHhHHHHHHHHHHhcCChh
Q 010215 215 KEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH----GCH-PCVISYSTIIQSYCRQYNFS 289 (515)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~ 289 (515)
..|++++|.+.++.+.........++..+...+...|++++|...+++.... +.. ....++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455666665433332222234455666666666666666666666655431 111 12334555555566666666
Q ss_pred HHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010215 290 KVYELLDEMQAQ----GCPP--NVVTYTTVMSYLAKSGDFEEAIRITEKMK 334 (515)
Q Consensus 290 ~A~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 334 (515)
+|++.+++..+. +-.+ ...++..+...+...|++++|...+++..
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 666665554431 1011 12334444555555555555555555544
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.51 E-value=9.9e-08 Score=81.69 Aligned_cols=143 Identities=8% Similarity=-0.034 Sum_probs=62.7
Q ss_pred HcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC--------------HHHHHHH
Q 010215 145 GKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLE-KN--------------TETMNLL 209 (515)
Q Consensus 145 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~--------------~~~~~~l 209 (515)
...|+++.+.+.++.-....+.....+..+...+.+.|++++|++.|++..+.... |+ ...+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 94 (198)
T ss_dssp -------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 33444444444443222222223334444556666667777777777666653211 10 1344444
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCCh
Q 010215 210 LDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNF 288 (515)
Q Consensus 210 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 288 (515)
..+|...|++++|+..++......+.+...+..+..+|...|++++|...|++..+.. +.+...+..+..++...++.
T Consensus 95 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 95 ATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHH
Confidence 4455555555555555554333333444445555555555555555555555544332 11333344444444333333
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.51 E-value=1.7e-06 Score=67.71 Aligned_cols=95 Identities=6% Similarity=-0.125 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010215 134 SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTL 213 (515)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 213 (515)
...+..+...+.+.|++++|...|++..+.++.+..++..+..+|.+.|++++|+..|++..+.. +.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 34455566666667777777777776666666666666666666666677777776666666543 23455666666666
Q ss_pred HHcCCHHHHHHHHHHh
Q 010215 214 CKEGKVELARSVFLEL 229 (515)
Q Consensus 214 ~~~~~~~~a~~~~~~~ 229 (515)
...|++++|...|++.
T Consensus 83 ~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 83 IAVKEYASALETLDAA 98 (126)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHH
Confidence 6666666666666653
No 150
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.48 E-value=8.8e-07 Score=71.66 Aligned_cols=98 Identities=6% Similarity=-0.020 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 010215 133 SSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDT 212 (515)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 212 (515)
+...+..+...+.+.|++++|...|+.....+|.+...+..+..+|...|++++|++.|++..+.. +.++..|..+..+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 556788888999999999999999999999999999999999999999999999999999998864 3467888899999
Q ss_pred HHHcCCHHHHHHHHHHhhc
Q 010215 213 LCKEGKVELARSVFLELKS 231 (515)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~ 231 (515)
|...|++++|...|++...
T Consensus 114 ~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999543
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.44 E-value=1.2e-06 Score=70.21 Aligned_cols=95 Identities=9% Similarity=-0.003 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010215 134 SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTL 213 (515)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 213 (515)
...+..+...+.+.|++++|...|+.....++.+...+..+..+|.+.|++++|+..|++..+.. +.++..+..+..++
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 34455556666677777777777777776666666666666777777777777777777766643 33555666666677
Q ss_pred HHcCCHHHHHHHHHHh
Q 010215 214 CKEGKVELARSVFLEL 229 (515)
Q Consensus 214 ~~~~~~~~a~~~~~~~ 229 (515)
...|++++|...|+..
T Consensus 97 ~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSA 112 (142)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 7777777777777663
No 152
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.43 E-value=1.4e-06 Score=69.78 Aligned_cols=102 Identities=15% Similarity=0.017 Sum_probs=60.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHH
Q 010215 163 GHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNI 242 (515)
Q Consensus 163 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 242 (515)
.++.+...+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|...|++.....|.+...+..
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 333344445555566666666666666666665542 3355556666666666666666666666644444555556666
Q ss_pred HHHHHHccCChhHHHHHHHHHHh
Q 010215 243 FIHGWCKINRVDEAQWTIQEMKG 265 (515)
Q Consensus 243 li~~~~~~g~~~~A~~~~~~~~~ 265 (515)
+..+|...|++++|...|++..+
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666666554
No 153
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.42 E-value=3.1e-06 Score=68.33 Aligned_cols=99 Identities=8% Similarity=0.000 Sum_probs=87.1
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 010215 132 HSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLD 211 (515)
Q Consensus 132 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 211 (515)
.+...+..+...+.+.|++++|...|+.....++.+...+..+..+|...|++++|++.|++..... +.+...+..+..
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 3566777888899999999999999999999899999999999999999999999999999998764 446788888999
Q ss_pred HHHHcCCHHHHHHHHHHhhc
Q 010215 212 TLCKEGKVELARSVFLELKS 231 (515)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~ 231 (515)
+|...|++++|...|+....
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999998543
No 154
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.41 E-value=3.5e-06 Score=71.91 Aligned_cols=131 Identities=13% Similarity=0.025 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 010215 135 EIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTL----------------NTIAKVMRRFSGAGQWEDAVRTFDELGTFG 198 (515)
Q Consensus 135 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 198 (515)
..+..+...+.+.|++++|...|++.....+.+. .++..+..+|.+.|++++|+..+++..+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 4566777888899999999999999887655443 777888899999999999999999998863
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHH-HHHHHHHhC
Q 010215 199 LEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQ-WTIQEMKGH 266 (515)
Q Consensus 199 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~ 266 (515)
+.+...+..+..++...|++++|...|++.....|.+..++..+..++...++.+++. ..+..+...
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4578888999999999999999999999966556777888888888888887777766 555555443
No 155
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=1e-05 Score=64.88 Aligned_cols=113 Identities=12% Similarity=-0.065 Sum_probs=73.6
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 010215 132 HSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVT---LNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNL 208 (515)
Q Consensus 132 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 208 (515)
.+...+..+...+.+.|++++|.+.|++..+.++.+ ..++..+...|...|++++|++.+++..+.. +.+...+..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 456677777777777777777777777777666554 5666666777777777777777777766542 235566666
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 010215 209 LLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIH 245 (515)
Q Consensus 209 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 245 (515)
+..++...|++++|...|++.....+.+...+..+..
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 6667777777777777776644433444444444433
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.39 E-value=8e-06 Score=63.89 Aligned_cols=109 Identities=14% Similarity=0.139 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCC-CC----HH
Q 010215 378 TSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLS-LD----IT 452 (515)
Q Consensus 378 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-p~----~~ 452 (515)
...+..+...+.+.|++++|++.|++.++.. +-+...|..+..+|...|++++|+ ..+++..+..+-. ++ ..
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~-~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECV-QFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHH-HHHHHHHHhCcccchhhHHHHH
Confidence 3456677788888888888888888888754 344667778888888888888888 7777776521111 11 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010215 453 TYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRL 491 (515)
Q Consensus 453 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 491 (515)
+|..+..++...|++++|++.|++.++ ..||+.+...
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~ 121 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHH
Confidence 566777888888999999999888875 4566655443
No 157
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.38 E-value=3.3e-06 Score=64.00 Aligned_cols=92 Identities=14% Similarity=0.012 Sum_probs=45.2
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHH
Q 010215 136 IYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEK--NTETMNLLLDTL 213 (515)
Q Consensus 136 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~ll~~~ 213 (515)
.+..+...+.+.|++++|...|++..+.++.+..++..+...+...|++++|++.|++..+.. +. +...+..+..++
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHH
Confidence 344445555555555555555555554444444444444555555555555555555544432 12 344444444444
Q ss_pred HHc-CCHHHHHHHHHH
Q 010215 214 CKE-GKVELARSVFLE 228 (515)
Q Consensus 214 ~~~-~~~~~a~~~~~~ 228 (515)
... |++++|.+.+..
T Consensus 87 ~~~~~~~~~A~~~~~~ 102 (112)
T 2kck_A 87 RYIEGKEVEAEIAEAR 102 (112)
T ss_dssp TTCSSCSHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHH
Confidence 444 444444444444
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.37 E-value=4.1e-06 Score=66.41 Aligned_cols=96 Identities=9% Similarity=-0.074 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 010215 132 HSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLD 211 (515)
Q Consensus 132 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 211 (515)
.++..+..+...+.+.|++++|...|+.....++.+..++..+..++...|++++|+..|++..+.. +.+...+..+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 3566677777777777777777777777766666666677667777777777777777777766643 335666666666
Q ss_pred HHHHcCCHHHHHHHHHH
Q 010215 212 TLCKEGKVELARSVFLE 228 (515)
Q Consensus 212 ~~~~~~~~~~a~~~~~~ 228 (515)
++...|++++|...|.+
T Consensus 86 ~~~~~~~~~~A~~~~~~ 102 (137)
T 3q49_B 86 CQLEMESYDEAIANLQR 102 (137)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHH
Confidence 77777777777777666
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.36 E-value=1.9e-05 Score=60.19 Aligned_cols=95 Identities=17% Similarity=0.122 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcc
Q 010215 171 IAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKI 250 (515)
Q Consensus 171 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 250 (515)
+..+...+...|++++|++.|++..+.. +.+...+..+...+...|++++|...+++.....+.+...+..+..++.+.
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3444555556666666666666655432 224555555555555556666666555553333344455555555555555
Q ss_pred CChhHHHHHHHHHHhC
Q 010215 251 NRVDEAQWTIQEMKGH 266 (515)
Q Consensus 251 g~~~~A~~~~~~~~~~ 266 (515)
|++++|...+++..+.
T Consensus 86 ~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKH 101 (118)
T ss_dssp TCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHc
Confidence 5555555555555543
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.36 E-value=6e-06 Score=67.94 Aligned_cols=97 Identities=10% Similarity=-0.008 Sum_probs=73.0
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 010215 133 SSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDT 212 (515)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 212 (515)
+...+..+...|.+.|++++|++.|++....++.+...+..+..+|.+.|++++|+..|++..+.. +.+...|..+..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 456677777777888888888888888877777777777777778888888888888887777653 3356777777777
Q ss_pred HHHcCCHHHHHHHHHHhh
Q 010215 213 LCKEGKVELARSVFLELK 230 (515)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~ 230 (515)
|...|++++|...|++..
T Consensus 89 ~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHH
Confidence 777788888877777743
No 161
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.33 E-value=1.1e-05 Score=62.86 Aligned_cols=87 Identities=14% Similarity=0.105 Sum_probs=33.4
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhH
Q 010215 211 DTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSK 290 (515)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 290 (515)
..+.+.|++++|...|++.....|.+...|..+..+|.+.|++++|...+++..+.. +.+...|..+..++...|++++
T Consensus 12 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~ 90 (126)
T 3upv_A 12 KEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYAS 90 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhCHHH
Confidence 333334444444444433222223333334444444444444444444444433322 1123333334444444444444
Q ss_pred HHHHHHHH
Q 010215 291 VYELLDEM 298 (515)
Q Consensus 291 A~~~~~~m 298 (515)
|++.|++.
T Consensus 91 A~~~~~~a 98 (126)
T 3upv_A 91 ALETLDAA 98 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 162
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.29 E-value=7.5e-06 Score=61.94 Aligned_cols=95 Identities=13% Similarity=0.047 Sum_probs=56.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC--ChhhHHHHHHHHH
Q 010215 171 IAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPP--NAHTFNIFIHGWC 248 (515)
Q Consensus 171 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~ 248 (515)
+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...+++.....+. +..++..+..++.
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 3344556666666666666666665542 234555566666666666666666666664443444 5556666666666
Q ss_pred cc-CChhHHHHHHHHHHhC
Q 010215 249 KI-NRVDEAQWTIQEMKGH 266 (515)
Q Consensus 249 ~~-g~~~~A~~~~~~~~~~ 266 (515)
+. |++++|.+.+++....
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TCSSCSHHHHHHHHHHGGG
T ss_pred HHhCCHHHHHHHHHHHhhc
Confidence 66 6666666666666554
No 163
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.29 E-value=0.00035 Score=63.86 Aligned_cols=97 Identities=5% Similarity=-0.069 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHccC--ChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCC-hhHHHHHHH
Q 010215 220 ELARSVFLELKSCIPPNAHTFNIFIHGWCKIN--RVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYN-FSKVYELLD 296 (515)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~ 296 (515)
++++.+++.+....|.+..+|+.-.-.+.+.| ++++++.+++++.+.. +.|..+|+.-.-.+...|. ++++++.++
T Consensus 91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 34444444433334445555555444444444 2455555555555443 2345555554444445554 355555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHH
Q 010215 297 EMQAQGCPPNVVTYTTVMSYLA 318 (515)
Q Consensus 297 ~m~~~g~~~~~~~~~~li~~~~ 318 (515)
.+.+..+. |..+|+.....+.
T Consensus 170 ~~I~~~p~-N~SAW~~R~~ll~ 190 (331)
T 3dss_A 170 SLITRNFS-NYSSWHYRSCLLP 190 (331)
T ss_dssp HHHHHCSC-CHHHHHHHHHHHH
T ss_pred HHHHHCCC-CHHHHHHHHHHHH
Confidence 55554322 4444544444333
No 164
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.28 E-value=0.00029 Score=64.38 Aligned_cols=181 Identities=9% Similarity=0.005 Sum_probs=113.1
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHHccCC----------hhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcC--Ch
Q 010215 221 LARSVFLELKSCIPPNAHTFNIFIHGWCKINR----------VDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQY--NF 288 (515)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~ 288 (515)
+|+.+++.+....|.+..+|+.--..+...+. +++++.+++.+.... +.+..+|+.-.-.+...+ .+
T Consensus 48 eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 48 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccH
Confidence 56666666555555555566554444433332 577888888887654 457788887777777777 47
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc------------
Q 010215 289 SKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGD-FEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRA------------ 355 (515)
Q Consensus 289 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~------------ 355 (515)
++++++++.+.+.... |-.+|+.-.-.+...|. ++++++.++.+.+.. +.|...|+.....+.+.
T Consensus 127 ~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~ 204 (331)
T 3dss_A 127 ARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRL 204 (331)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcccccccccc
Confidence 8899999988886533 77778777777777787 588888888888765 56667776665555443
Q ss_pred --CCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHHh
Q 010215 356 --SRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHH-----------GHHEKAFHVLEEMNK 406 (515)
Q Consensus 356 --g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~ 406 (515)
+.++++.+.+...+... +-|...|+-+-..+.+. +.++++++.++++.+
T Consensus 205 ~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 205 PENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence 33556666665233221 22455555443333333 234555555555555
No 165
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.27 E-value=1.3e-05 Score=62.60 Aligned_cols=94 Identities=13% Similarity=0.054 Sum_probs=41.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCC--Ccc----HhHHHHHHH
Q 010215 207 NLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGC--HPC----VISYSTIIQ 280 (515)
Q Consensus 207 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~~li~ 280 (515)
..+...+.+.|++++|+..|++.....|.+...|+.+..+|.+.|++++|+..+++..+... .++ ..+|..+..
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~ 91 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGN 91 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 33444444445555555555443333334444445555555555555555555544433210 000 123444444
Q ss_pred HHHhcCChhHHHHHHHHHHH
Q 010215 281 SYCRQYNFSKVYELLDEMQA 300 (515)
Q Consensus 281 ~~~~~g~~~~A~~~~~~m~~ 300 (515)
++...|++++|++.|++...
T Consensus 92 ~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 92 AFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 44455555555555554443
No 166
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.27 E-value=7.2e-06 Score=64.08 Aligned_cols=94 Identities=10% Similarity=0.065 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCC----HHHHHH
Q 010215 135 EIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGL--EKN----TETMNL 208 (515)
Q Consensus 135 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~----~~~~~~ 208 (515)
..+..+...+...|++++|...|++....++.+..++..+...+...|++++|+..+++..+... .++ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34555666666666666666666666665555566666666666666666666666666554321 111 444445
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 010215 209 LLDTLCKEGKVELARSVFLE 228 (515)
Q Consensus 209 ll~~~~~~~~~~~a~~~~~~ 228 (515)
+..++...|++++|.+.|+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~ 104 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNK 104 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHH
Confidence 55555555555555555555
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.25 E-value=1.4e-05 Score=62.30 Aligned_cols=113 Identities=10% Similarity=0.138 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCC-CCC----HH
Q 010215 378 TSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHL-SLD----IT 452 (515)
Q Consensus 378 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-~p~----~~ 452 (515)
...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|+ ..+++..+...- .++ ..
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCR-ELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHH-HHHHHHHhhccccchhHHHHHH
Confidence 3456677777888888888888888887754 445667777778888888888888 777777663221 122 56
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010215 453 TYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDE 495 (515)
Q Consensus 453 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 495 (515)
.|..+...+...|++++|.+.+++..+ ..|+...+..+...
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~~~ 121 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCHHHHHHHHHH
Confidence 777788888888888888888888876 34666555544443
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=3.7e-05 Score=61.52 Aligned_cols=100 Identities=10% Similarity=0.034 Sum_probs=71.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhH
Q 010215 165 IVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKN----TETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTF 240 (515)
Q Consensus 165 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 240 (515)
+.+...+..+...+...|++++|++.|++..+. .|+ ...+..+..++...|++++|...+++.....+.+...+
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 345666677777888888888888888887764 454 56667777777777888888777777544445566777
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhC
Q 010215 241 NIFIHGWCKINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 241 ~~li~~~~~~g~~~~A~~~~~~~~~~ 266 (515)
..+..++...|++++|...|++..+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777777777777777777777654
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.24 E-value=2.3e-05 Score=61.94 Aligned_cols=97 Identities=10% Similarity=-0.064 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 010215 167 TLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHG 246 (515)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 246 (515)
+...+..+...+...|++++|+..|....+.. +.+...+..+..++...|++++|...++......+.+...+..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34444444455555555555555555544432 22344444445555555555555555544333333344444444444
Q ss_pred HHccCChhHHHHHHHHHH
Q 010215 247 WCKINRVDEAQWTIQEMK 264 (515)
Q Consensus 247 ~~~~g~~~~A~~~~~~~~ 264 (515)
|...|++++|...|++..
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 545555555544444443
No 170
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.24 E-value=2.7e-05 Score=60.72 Aligned_cols=91 Identities=13% Similarity=0.021 Sum_probs=51.2
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHH
Q 010215 140 MVDILGKVRQMDQMRALLEEMSKGHIVTL---NTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKN---TETMNLLLDTL 213 (515)
Q Consensus 140 li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll~~~ 213 (515)
+...+.+.|++++|...|+.+...++.+. .++..+..++.+.|++++|+..|++..+.. +.+ ...+..+..++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHH
Confidence 44455566666666666666655444333 455555666666666666666666665532 112 44455555566
Q ss_pred HHcCCHHHHHHHHHHhhc
Q 010215 214 CKEGKVELARSVFLELKS 231 (515)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~ 231 (515)
...|++++|...|+.+..
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666665433
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.23 E-value=1.1e-05 Score=62.48 Aligned_cols=91 Identities=8% Similarity=-0.057 Sum_probs=56.7
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 010215 138 EMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEG 217 (515)
Q Consensus 138 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 217 (515)
..+...+.+.|++++|...|+...+.++.+..++..+..++...|++++|+..|++..+.. +.+...+..+..++...|
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 3445556666666666666666666666666666666666666666666666666666542 224555666666666666
Q ss_pred CHHHHHHHHHHh
Q 010215 218 KVELARSVFLEL 229 (515)
Q Consensus 218 ~~~~a~~~~~~~ 229 (515)
++++|...+++.
T Consensus 100 ~~~~A~~~~~~a 111 (121)
T 1hxi_A 100 NANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 666666666653
No 172
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.20 E-value=3.6e-05 Score=63.16 Aligned_cols=91 Identities=16% Similarity=0.148 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 010215 274 SYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLG 353 (515)
Q Consensus 274 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 353 (515)
.|..+...+.+.|++++|++.|++..+.. +.+...+..+..+|.+.|++++|+..+++..+.. +.+...+..+..+|.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34444444444444444444444444331 1133444444444444444444444444444432 223344444444444
Q ss_pred hcCCHHHHHHHHH
Q 010215 354 RASRVQEAVYVYQ 366 (515)
Q Consensus 354 ~~g~~~~A~~~~~ 366 (515)
..|++++|...|+
T Consensus 91 ~~g~~~~A~~~~~ 103 (164)
T 3sz7_A 91 DMADYKGAKEAYE 103 (164)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HccCHHHHHHHHH
Confidence 4444444444444
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.16 E-value=0.00021 Score=69.05 Aligned_cols=200 Identities=8% Similarity=0.017 Sum_probs=120.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC
Q 010215 279 IQSYCRQYNFSKVYELLDEMQAQGCPPN----------------VVTYTTVMSYLAKSGDFEEAIRITEKMKIVGS-KPD 341 (515)
Q Consensus 279 i~~~~~~g~~~~A~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~ 341 (515)
...+.+.|++++|++.|..+.+...... ..++..+...|...|++++|.+.+..+.+.-- .++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4556778899999999988887532211 12366777888888888888888877665211 122
Q ss_pred HH----HHHHHHHHHHhcCCHHHHHHHHHhhch---hCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-C--
Q 010215 342 SR----FFNCLIYTLGRASRVQEAVYVYQVEMP---ENGVAPD-TSTFNTMITMFSHHGHHEKAFHVLEEMNKLEH-C-- 410 (515)
Q Consensus 342 ~~----~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~-- 410 (515)
.. +.+.+-..+...|+.+.|..++..... ..+..+. ..++..+...|...|++++|..+++++...-. .
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 21 222233334456777888777762221 1222222 44666777777778888888888877765310 1
Q ss_pred CCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 411 KPN-VQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD-----ITTYTLVIHGLCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 411 ~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 479 (515)
.|. ...+..++..|...|++++|. .++++......-.++ ...+..+...+...|++++|...+.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSK-ASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHH-HHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 111 335666777777788888877 777666542111111 23455556666677778887777777653
No 174
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.15 E-value=9e-05 Score=71.61 Aligned_cols=192 Identities=7% Similarity=-0.037 Sum_probs=117.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CCCC
Q 010215 175 MRRFSGAGQWEDAVRTFDELGTFGLEKN----------------TETMNLLLDTLCKEGKVELARSVFLELKS---CIPP 235 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~ 235 (515)
.+.+.+.|++++|++.|..+.+...... ...+..+...|...|++++|.+.+..+.. ....
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 5677888999999999988887532211 12356677788888888888888877432 2211
Q ss_pred C---hhhHHHHHHHHHccCChhHHHHHHHHHHh----CCCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHC--CC--
Q 010215 236 N---AHTFNIFIHGWCKINRVDEAQWTIQEMKG----HGCHP-CVISYSTIIQSYCRQYNFSKVYELLDEMQAQ--GC-- 303 (515)
Q Consensus 236 ~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~-- 303 (515)
. ..+.+.+...+...|++++|..++++... .+..+ -..++..+...|...|++++|..++++.... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 12233344445556777788777776543 12111 2345667777777788888888777776542 11
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 010215 304 PP-NVVTYTTVMSYLAKSGDFEEAIRITEKMKIV--GSKPD----SRFFNCLIYTLGRASRVQEAVYVYQ 366 (515)
Q Consensus 304 ~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~ 366 (515)
.+ ...++..++..|...|++++|..++++.... ....+ ...+..+...+...|++++|...|.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~ 240 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFF 240 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 11 1345666777777777777777777776542 11111 2334445555566677777777666
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.15 E-value=2e-05 Score=64.10 Aligned_cols=133 Identities=9% Similarity=-0.031 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC----HHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC----H
Q 010215 380 TFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPN----VQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD----I 451 (515)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~----~ 451 (515)
++..+...+...|++++|+..+++..+.....++ ..++..+...+...|++++|. ..+++..+...-.++ .
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETAS-EYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHhCCcHHHH
Confidence 4555566666666777766666666542100011 124555666666777777776 666665442111111 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010215 452 TTYTLVIHGLCRANKCEWAYLLFKEMIGH----DITP-RYQTCRLILDEVKQKHMYDAAEKIEAVMK 513 (515)
Q Consensus 452 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 513 (515)
..+..+...+...|++++|.+.+++..+. +..+ ...++..+...+...|++++|.+.++...
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34556666777777777777777766532 1111 12345555556677777777777776654
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.13 E-value=8e-06 Score=80.02 Aligned_cols=121 Identities=7% Similarity=-0.061 Sum_probs=92.9
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 010215 140 MVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKV 219 (515)
Q Consensus 140 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 219 (515)
+...+.+.|++++|.+.|++..+.++.+..++..+..+|.+.|++++|++.+++..+.. +.+...+..+..+|...|++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 34456678899999999998888888888888888889999999999999999888863 34677888888888899999
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHH--HHccCChhHHHHHHH
Q 010215 220 ELARSVFLELKSCIPPNAHTFNIFIHG--WCKINRVDEAQWTIQ 261 (515)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 261 (515)
++|.+.|++..+..+.+...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999988554445556666666666 777888888888887
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.11 E-value=3.4e-05 Score=75.21 Aligned_cols=88 Identities=8% Similarity=-0.123 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHH
Q 010215 204 ETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYC 283 (515)
Q Consensus 204 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 283 (515)
..|..+..+|.+.|++++|+..+++.....+.+...|..+..+|...|++++|...|++..+.. +-+...+..+..++.
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 4444555555555555555555555333334455555555555555555555555555555442 223344555555555
Q ss_pred hcCChhHHH
Q 010215 284 RQYNFSKVY 292 (515)
Q Consensus 284 ~~g~~~~A~ 292 (515)
+.++.+++.
T Consensus 397 ~~~~~~~a~ 405 (457)
T 1kt0_A 397 KAKEHNERD 405 (457)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.10 E-value=2.4e-06 Score=83.32 Aligned_cols=96 Identities=13% Similarity=0.046 Sum_probs=67.2
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010215 237 AHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSY 316 (515)
Q Consensus 237 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 316 (515)
..+|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|+..|++..+.. +-+..++..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4567778888888888888888888877654 3356778888888888888888888888887653 2245667777777
Q ss_pred HHhcCCHHHHH-HHHHHHH
Q 010215 317 LAKSGDFEEAI-RITEKMK 334 (515)
Q Consensus 317 ~~~~g~~~~a~-~~~~~~~ 334 (515)
+.+.++.+++. ..+..|.
T Consensus 395 ~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 395 QKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 77777777665 3444443
No 179
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.10 E-value=2.5e-05 Score=60.38 Aligned_cols=90 Identities=11% Similarity=0.001 Sum_probs=47.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChh
Q 010215 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVD 254 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 254 (515)
...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|+..|++.....|.+...+..+..+|.+.|+++
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~ 102 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN 102 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 445555555555555555555432 2245555555555555555555555555543333444555555555555555555
Q ss_pred HHHHHHHHHHh
Q 010215 255 EAQWTIQEMKG 265 (515)
Q Consensus 255 ~A~~~~~~~~~ 265 (515)
+|...|++..+
T Consensus 103 ~A~~~~~~al~ 113 (121)
T 1hxi_A 103 AALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 180
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.09 E-value=2.5e-05 Score=73.61 Aligned_cols=90 Identities=11% Similarity=0.016 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHH
Q 010215 202 NTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQS 281 (515)
Q Consensus 202 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 281 (515)
+...|..+..+|.+.|++++|+..+++.....+.+...+..+..+|...|++++|...|++..+.. +.+...+..+...
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 344555666666666666666666666444445556666666666666666666666666665542 2244555555555
Q ss_pred HHhcCChhHHH
Q 010215 282 YCRQYNFSKVY 292 (515)
Q Consensus 282 ~~~~g~~~~A~ 292 (515)
+...++.+++.
T Consensus 351 ~~~~~~~~~a~ 361 (370)
T 1ihg_A 351 KQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.04 E-value=8.4e-06 Score=62.69 Aligned_cols=80 Identities=11% Similarity=0.013 Sum_probs=35.3
Q ss_pred CChHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010215 148 RQMDQMRALLEEMSKG---HIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARS 224 (515)
Q Consensus 148 g~~~~A~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~ 224 (515)
|++++|+..|++..+. ++.+..++..+...|...|++++|++.|++..+.. +-+...+..+..++...|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4444455555544443 23333444444444445555555555554444432 2234444444444444455554444
Q ss_pred HHHH
Q 010215 225 VFLE 228 (515)
Q Consensus 225 ~~~~ 228 (515)
.+++
T Consensus 83 ~~~~ 86 (117)
T 3k9i_A 83 LLLK 86 (117)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.03 E-value=2.7e-05 Score=63.82 Aligned_cols=94 Identities=12% Similarity=0.006 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcC------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010215 134 SEIYEMMVDILGKVRQMDQMRALLEEMSKG------------------HIVTLNTIAKVMRRFSGAGQWEDAVRTFDELG 195 (515)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 195 (515)
...+......+.+.|++++|...|+..... ++....++..+..+|.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345566667777778888887777776543 22222334444444444444444444444444
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010215 196 TFGLEKNTETMNLLLDTLCKEGKVELARSVFLE 228 (515)
Q Consensus 196 ~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 228 (515)
+.. +.+...|..+..+|...|++++|...|+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~ 122 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKL 122 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 432 22344444444444444444444444444
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.02 E-value=0.00014 Score=56.47 Aligned_cols=92 Identities=20% Similarity=0.178 Sum_probs=53.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---hhhHHHHHHHH
Q 010215 174 VMRRFSGAGQWEDAVRTFDELGTFGLEKNT---ETMNLLLDTLCKEGKVELARSVFLELKSCIPPN---AHTFNIFIHGW 247 (515)
Q Consensus 174 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~ 247 (515)
+...+.+.|++++|++.|+...+.. +.+. ..+..+..++...|++++|...|+.+....|.+ ..++..+..++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3455666677777777776666532 1122 355556666666666666666666644333333 44555666666
Q ss_pred HccCChhHHHHHHHHHHhC
Q 010215 248 CKINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 248 ~~~g~~~~A~~~~~~~~~~ 266 (515)
.+.|++++|...|+++.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 6666666666666666554
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.02 E-value=3.4e-05 Score=62.64 Aligned_cols=134 Identities=10% Similarity=-0.018 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhchhCC-CCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC----H
Q 010215 344 FFNCLIYTLGRASRVQEAVYVYQVEMPENG-VAPD----TSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPN----V 414 (515)
Q Consensus 344 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~ 414 (515)
++..+...|...|++++|...++ ...+.. -.++ ...+..+...+...|++++|.+.+++..+.....++ .
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~-~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHE-QRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHH-HHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34444455555555555555555 221110 0011 135666677777788888888877776552100111 3
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 415 QTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD----ITTYTLVIHGLCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 415 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 479 (515)
..+..+...+...|++++|. ..+++..+...-..+ ...+..+...+...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~-~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAI-DYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 45666777788888888888 777776642111111 34567788888899999999999988764
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.02 E-value=1.5e-05 Score=78.15 Aligned_cols=120 Identities=7% Similarity=-0.068 Sum_probs=94.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChh
Q 010215 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVD 254 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 254 (515)
...+.+.|++++|++.|++..+.. +.+...+..+..+|.+.|++++|++.+++..+..+.+..++..+..+|.+.|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 345677899999999999998753 4468889999999999999999999999976667778889999999999999999
Q ss_pred HHHHHHHHHHhCCCCccHhHHHHHHHH--HHhcCChhHHHHHHH
Q 010215 255 EAQWTIQEMKGHGCHPCVISYSTIIQS--YCRQYNFSKVYELLD 296 (515)
Q Consensus 255 ~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 296 (515)
+|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999987753 2244556666555 788899999999887
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.93 E-value=8.9e-05 Score=69.85 Aligned_cols=137 Identities=9% Similarity=0.043 Sum_probs=91.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcc
Q 010215 171 IAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKI 250 (515)
Q Consensus 171 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 250 (515)
+..+...+.+.|++++|++.|++..+. .++ ...... .+......+.+..+|..+..+|.+.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~----------~~~~~~-------~~~~~~~~~~~~~~~~nla~~~~~~ 286 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRY--VEG----------SRAAAE-------DADGAKLQPVALSCVLNIGACKLKM 286 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--HHH----------HHHHSC-------HHHHGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHH--hhc----------CccccC-------hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444566777777777777777766542 000 000001 1111112233567788888888899
Q ss_pred CChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010215 251 NRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIR 328 (515)
Q Consensus 251 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 328 (515)
|++++|+..+++..+.. +.+...|..+..+|...|++++|++.|++..+.. +.+...+..+...+...++.+++.+
T Consensus 287 g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 287 SDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888764 3357788888888889999999999998887763 2256677777777777777776654
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.93 E-value=2.1e-05 Score=60.39 Aligned_cols=86 Identities=13% Similarity=0.076 Sum_probs=48.5
Q ss_pred cCChhHHHHHHHHHHhCC--CCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010215 250 INRVDEAQWTIQEMKGHG--CHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAI 327 (515)
Q Consensus 250 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 327 (515)
.|++++|+..|++..+.+ -+.+...|..+...|...|++++|++.|++..+.. +-+..++..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 456666666666666542 12234556666666666666666666666666543 224555666666666666666666
Q ss_pred HHHHHHHhc
Q 010215 328 RITEKMKIV 336 (515)
Q Consensus 328 ~~~~~~~~~ 336 (515)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666553
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.90 E-value=3.7e-05 Score=71.59 Aligned_cols=149 Identities=10% Similarity=-0.033 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010215 134 SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTL 213 (515)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 213 (515)
...+..+...+.+.|++++|...|++.....+.+. .+...++.+++...+. ...|..+..+|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 34566777888888899999988888765443221 1122233333332221 12566677777
Q ss_pred HHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHH-HHhcCChhHHH
Q 010215 214 CKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQS-YCRQYNFSKVY 292 (515)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~ 292 (515)
.+.|++++|+..+++.....+.+...|..+..+|...|++++|...|++..+.. +-+...+..+... ....+..+++.
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888887777554456677777778888888888888888887776542 1233444444444 23345566777
Q ss_pred HHHHHHHHC
Q 010215 293 ELLDEMQAQ 301 (515)
Q Consensus 293 ~~~~~m~~~ 301 (515)
+.|..|...
T Consensus 320 ~~~~~~l~~ 328 (338)
T 2if4_A 320 EMYKGIFKG 328 (338)
T ss_dssp ---------
T ss_pred HHHHHhhCC
Confidence 777777654
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.86 E-value=0.00018 Score=58.77 Aligned_cols=99 Identities=11% Similarity=0.063 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-------CC----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 010215 168 LNTIAKVMRRFSGAGQWEDAVRTFDELGTF-------GL----------EKNTETMNLLLDTLCKEGKVELARSVFLELK 230 (515)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~----------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 230 (515)
...+......+.+.|++++|+..|.+..+. .- +.+...|..+..+|.+.|++++|+..++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344555678888899999999998887653 00 1112344445555555555555555555533
Q ss_pred cCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 010215 231 SCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 231 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 266 (515)
...|.+...|..+..+|...|++++|...|++....
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 333444555555555555555555555555555443
No 190
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.85 E-value=2e-05 Score=59.57 Aligned_cols=65 Identities=8% Similarity=-0.015 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010215 133 SSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTF 197 (515)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 197 (515)
+...+..+...+.+.|++++|.+.|++....++.+..++..+..++.+.|++++|++.|++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34566677777777777888877777777777777777777777777777777777777777764
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.79 E-value=0.0012 Score=65.76 Aligned_cols=172 Identities=8% Similarity=-0.006 Sum_probs=112.1
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHhhcCCCCChhhHHHHHHHHHccC--C
Q 010215 185 EDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGK----------VELARSVFLELKSCIPPNAHTFNIFIHGWCKIN--R 252 (515)
Q Consensus 185 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~ 252 (515)
++|++.++++.... +-+...|+.--.++...|+ ++++.+.++.+....|.+..+|+.-.-.+.+.+ +
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 45566666666542 2234445544444444444 677777777755556677777777777777777 5
Q ss_pred hhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------
Q 010215 253 VDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQY-NFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKS----------- 320 (515)
Q Consensus 253 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~----------- 320 (515)
++++++.++++.+.. +.+..+|+.-...+.+.| .++++++.++++.+.... |..+|+.....+.+.
T Consensus 125 ~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccccc
Confidence 577777777777664 346677777766667777 677777777777765433 666776666665553
Q ss_pred ---CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 010215 321 ---GDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQE 360 (515)
Q Consensus 321 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 360 (515)
+.++++.+.+++..... +-+...|.-+-..+.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 45688888888887764 5566777777766766666433
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.76 E-value=0.0013 Score=65.68 Aligned_cols=171 Identities=8% Similarity=-0.085 Sum_probs=121.2
Q ss_pred ChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-
Q 010215 149 QMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQ----------WEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEG- 217 (515)
Q Consensus 149 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~- 217 (515)
..++|.+.++.+...++....+++.-...+...|+ ++++++.++.+.+.. +-+..+|..-.-++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 34677888888887777777666655555555555 788888888887754 446677777777777777
Q ss_pred -CHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccC-ChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhc----------
Q 010215 218 -KVELARSVFLELKSCIPPNAHTFNIFIHGWCKIN-RVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQ---------- 285 (515)
Q Consensus 218 -~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---------- 285 (515)
+++++.+.++++.+..+.|..+|+.-...+.+.| .++++++.++++.+.. +-|..+|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccccc
Confidence 6688888888866666777888887777777777 7788888888877765 34677777776666553
Q ss_pred ----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010215 286 ----YNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGD 322 (515)
Q Consensus 286 ----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 322 (515)
+.++++++.+++..... +-|..+|...-..+.+.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred cccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 45688888888887753 3356777776666666665
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.75 E-value=0.00021 Score=69.53 Aligned_cols=97 Identities=11% Similarity=-0.015 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhc----C----CCCChhhHHHHHHHHHccCChhHHHHHHHHHHh-----CCC-C
Q 010215 204 ETMNLLLDTLCKEGKVELARSVFLELKS----C----IPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKG-----HGC-H 269 (515)
Q Consensus 204 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~-~ 269 (515)
.+++.|..+|...|++++|+.++++... . .|....+++.|...|...|++++|+.++++..+ .|- .
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3455566666666666666666555211 1 112234566666667777777777666665542 121 1
Q ss_pred c-cHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010215 270 P-CVISYSTIIQSYCRQYNFSKVYELLDEMQA 300 (515)
Q Consensus 270 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 300 (515)
| ...+.+.+-.++...+.+++|..+|..+.+
T Consensus 432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 122344455555566666666666666554
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.74 E-value=6.2e-05 Score=70.08 Aligned_cols=147 Identities=8% Similarity=-0.027 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 010215 169 NTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWC 248 (515)
Q Consensus 169 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 248 (515)
..+..+...+.+.|++++|+..|++..+. .|+... +...++.+++...+ . ...|..+..+|.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~------~~~~~nla~~~~ 241 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H------HHHHHHHHHHHH
Confidence 33455677888899999999999998764 344332 12233333333222 1 237888999999
Q ss_pred ccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHH-HHhcCCHHHH
Q 010215 249 KINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPP-NVVTYTTVMSY-LAKSGDFEEA 326 (515)
Q Consensus 249 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~-~~~~g~~~~a 326 (515)
+.|++++|...+++..+.. +.+...|..+..+|...|++++|++.|++..+. .| +...+..+... ....+..+.+
T Consensus 242 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998764 346788999999999999999999999998765 33 34445555444 2345677888
Q ss_pred HHHHHHHHhc
Q 010215 327 IRITEKMKIV 336 (515)
Q Consensus 327 ~~~~~~~~~~ 336 (515)
.++|..+...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8899988764
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.73 E-value=0.0013 Score=51.97 Aligned_cols=88 Identities=6% Similarity=-0.131 Sum_probs=38.0
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010215 243 FIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCR----QYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLA 318 (515)
Q Consensus 243 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 318 (515)
|...|...+.+++|.++|++..+.| +...+..|...|.. .+++++|+++|++..+.| +...+..+...|.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~ 104 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQY 104 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence 3333333344444444444444433 33344444444443 344444444444444432 3334444444444
Q ss_pred h----cCCHHHHHHHHHHHHhc
Q 010215 319 K----SGDFEEAIRITEKMKIV 336 (515)
Q Consensus 319 ~----~g~~~~a~~~~~~~~~~ 336 (515)
. .+++++|.+.+++..+.
T Consensus 105 ~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 105 AGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHC
Confidence 4 44444444444444443
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.70 E-value=0.00047 Score=55.21 Aligned_cols=55 Identities=13% Similarity=0.018 Sum_probs=26.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCC-C-----C-----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010215 174 VMRRFSGAGQWEDAVRTFDELGTFGLE-K-----N-----TETMNLLLDTLCKEGKVELARSVFLE 228 (515)
Q Consensus 174 li~~~~~~g~~~~A~~~~~~m~~~g~~-~-----~-----~~~~~~ll~~~~~~~~~~~a~~~~~~ 228 (515)
....+.+.|++++|+..|++..+.... | + ...|..+..++.+.|++++|+..+++
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~k 82 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADK 82 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 345555566666666666665543211 0 1 11444444445555555555544444
No 197
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.68 E-value=0.0005 Score=55.05 Aligned_cols=95 Identities=5% Similarity=-0.131 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC-------Chh-----hHHHHHHHHHccCChhHHHHHHHHHHhC-----C
Q 010215 205 TMNLLLDTLCKEGKVELARSVFLELKSCIPP-------NAH-----TFNIFIHGWCKINRVDEAQWTIQEMKGH-----G 267 (515)
Q Consensus 205 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~ 267 (515)
.+......+.+.|++++|+..|++...-.|. +.. .|+.+..++.+.|++++|+..+++..+. .
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3445666677788888888888773221111 111 4555555555555555555555554432 0
Q ss_pred CCc-cHhHH----HHHHHHHHhcCChhHHHHHHHHHH
Q 010215 268 CHP-CVISY----STIIQSYCRQYNFSKVYELLDEMQ 299 (515)
Q Consensus 268 ~~~-~~~~~----~~li~~~~~~g~~~~A~~~~~~m~ 299 (515)
+.| +...| .....++...|++++|++.|++..
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 012 22334 444444444444444444444443
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.66 E-value=0.001 Score=52.50 Aligned_cols=110 Identities=6% Similarity=-0.093 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc----cCChhHHHH
Q 010215 183 QWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCK----INRVDEAQW 258 (515)
Q Consensus 183 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~ 258 (515)
++++|+++|++..+.| .++.. +...|...+.+++|.++|++.... .+...+..|...|.. .+++++|..
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4556666666666555 22222 444454555566666666653221 345556666666665 566667777
Q ss_pred HHHHHHhCCCCccHhHHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 010215 259 TIQEMKGHGCHPCVISYSTIIQSYCR----QYNFSKVYELLDEMQAQG 302 (515)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 302 (515)
+|++..+.| +...+..|...|.. .+++++|+++|++..+.|
T Consensus 83 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 83 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 777666654 45556666666666 666777777777666654
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.65 E-value=0.00049 Score=49.43 Aligned_cols=80 Identities=10% Similarity=0.096 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010215 134 SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTL 213 (515)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 213 (515)
...+..+...+.+.|++++|...|++....++.+..++..+...+.+.|++++|++.|++..+.. +.+...+..+..++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 44566666667777777777777777766666666666666667777777777777776666542 23445555454444
Q ss_pred H
Q 010215 214 C 214 (515)
Q Consensus 214 ~ 214 (515)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.61 E-value=0.00078 Score=65.59 Aligned_cols=124 Identities=11% Similarity=-0.041 Sum_probs=90.5
Q ss_pred HHHHcCCHHHHHHHHHHhh---c-CCC----CChhhHHHHHHHHHccCChhHHHHHHHHHHhC-----C--CCccHhHHH
Q 010215 212 TLCKEGKVELARSVFLELK---S-CIP----PNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH-----G--CHPCVISYS 276 (515)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~---~-~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~ 276 (515)
.+...|++++|+.++++.. . .+. ....+++.|...|...|++++|..++++..+. | .+-...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4557789999998887722 1 122 23567899999999999999999999887542 2 122346789
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH-----CCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 277 TIIQSYCRQYNFSKVYELLDEMQA-----QGCP-PN-VVTYTTVMSYLAKSGDFEEAIRITEKMKI 335 (515)
Q Consensus 277 ~li~~~~~~g~~~~A~~~~~~m~~-----~g~~-~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 335 (515)
.|...|...|++++|+.++++..+ .|.. |+ ..+...+-.++...+.+++|+.++.++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988764 2321 22 23445556677778888888888888765
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.60 E-value=0.00029 Score=53.58 Aligned_cols=75 Identities=16% Similarity=0.131 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010215 153 MRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLE 228 (515)
Q Consensus 153 A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 228 (515)
|...|++..+.++.+...+..+...|...|++++|+..|++..+.. +.+...+..+..++...|++++|...|++
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444444444444444455555555555554444432 22344444444444444555555444444
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.58 E-value=8.5e-05 Score=55.99 Aligned_cols=90 Identities=13% Similarity=0.020 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC------hhhHHH
Q 010215 169 NTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPN------AHTFNI 242 (515)
Q Consensus 169 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~ 242 (515)
..+..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|+..+++.....|.+ ...+..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 344445566666666666666666665542 3355556666666666666666666666644333333 344444
Q ss_pred HHHHHHccCChhHHHHH
Q 010215 243 FIHGWCKINRVDEAQWT 259 (515)
Q Consensus 243 li~~~~~~g~~~~A~~~ 259 (515)
+..++...|+.+.|...
T Consensus 84 ~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHhHhhhHhH
Confidence 44445444444444433
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.45 E-value=0.00031 Score=56.15 Aligned_cols=99 Identities=8% Similarity=0.023 Sum_probs=66.9
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCCh----------HHHHHHHHHHHHHcCCCCC-CHHHHHHHH
Q 010215 390 HHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKT----------DECLSQLLDDMVNKHHLSL-DITTYTLVI 458 (515)
Q Consensus 390 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~----------~~A~~~~~~~~~~~~~~~p-~~~~~~~li 458 (515)
+.+.+++|++.+++..+.. +.+...|..+..++...+++ ++|+ ..|++..+ +.| +...|..+.
T Consensus 14 r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi-~~le~AL~---ldP~~~~A~~~LG 87 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAI-TKFEEALL---IDPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH-HHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHH-HHHHHHHH---hCcCcHHHHHHHH
Confidence 3456677777777777754 44566666666666666543 4777 77777776 344 356777777
Q ss_pred HHHHhcC-----------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010215 459 HGLCRAN-----------KCEWAYLLFKEMIGHDITPRYQTCRLILDEV 496 (515)
Q Consensus 459 ~~~~~~g-----------~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 496 (515)
.+|...| ++++|++.|++.++ +.|+...|...+..+
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 7877664 78888888888886 677777666655544
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.45 E-value=0.0016 Score=46.64 Aligned_cols=75 Identities=15% Similarity=0.182 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 010215 171 IAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHG 246 (515)
Q Consensus 171 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 246 (515)
+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++.....|.+...+..+..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 3334444455555555555555544432 22344444444444455555555554444332233334444433333
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.40 E-value=0.0007 Score=49.97 Aligned_cols=65 Identities=14% Similarity=0.063 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010215 132 HSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGT 196 (515)
Q Consensus 132 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 196 (515)
.++.++..+...|.+.|++++|+..|++..+.++....++..+..+|...|++++|++.|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45677777778888888888888888887777777777777777788888888888887777654
No 206
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.40 E-value=0.0013 Score=49.76 Aligned_cols=61 Identities=7% Similarity=-0.014 Sum_probs=23.5
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHH
Q 010215 236 NAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDE 297 (515)
Q Consensus 236 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 297 (515)
+...+..+...|...|++++|...|++..+.. +.+...|..+..+|...|++++|+..|++
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33333444444444444444444444433321 11233333344444444444444444433
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.32 E-value=0.00089 Score=49.37 Aligned_cols=64 Identities=19% Similarity=0.234 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010215 377 DTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVN 443 (515)
Q Consensus 377 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 443 (515)
+...+..+...|...|++++|+..|++..+.. +.+...|..+..++...|++++|+ ..+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~-~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAI-DTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHh
Confidence 34445555555555555555555555555533 222344555555555555555555 55544443
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.22 E-value=0.00071 Score=54.02 Aligned_cols=56 Identities=16% Similarity=0.103 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHhCCCCccHhHHHHHHHHHHhc-----------CChhHHHHHHHHHHHCCCCCCHHHHHH
Q 010215 254 DEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQ-----------YNFSKVYELLDEMQAQGCPPNVVTYTT 312 (515)
Q Consensus 254 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~~~~~~~~~ 312 (515)
++|+..|++..+.. +.+..+|..+..+|... |++++|++.|++..+. .|+...|..
T Consensus 63 ~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~ 129 (158)
T 1zu2_A 63 QEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLK 129 (158)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 35555555555442 22344555555555544 3566666666666654 444444433
No 209
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.05 E-value=0.041 Score=57.63 Aligned_cols=42 Identities=12% Similarity=0.060 Sum_probs=20.4
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010215 319 KSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQ 366 (515)
Q Consensus 319 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 366 (515)
..|+++.|.++.+. ..+...|..+...+.+.|+++.|.+.|.
T Consensus 664 ~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~~~~~~A~~~y~ 705 (814)
T 3mkq_A 664 KVGQLTLARDLLTD------ESAEMKWRALGDASLQRFNFKLAIEAFT 705 (814)
T ss_dssp HHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44555555544322 1234455555555555555555555554
No 210
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.84 E-value=0.021 Score=59.84 Aligned_cols=150 Identities=12% Similarity=0.158 Sum_probs=83.0
Q ss_pred HcCCChHHHHH-HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 010215 145 GKVRQMDQMRA-LLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELAR 223 (515)
Q Consensus 145 ~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~ 223 (515)
...+++++|.+ ++..++ +...+..++..+.+.|.+++|+++.+. .. .-.......|+++.|.
T Consensus 610 ~~~~~~~~a~~~~l~~i~-----~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVE-----GKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLAR 672 (814)
T ss_dssp HHTTCHHHHHHHTGGGCC-----CHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHhcCC-----chHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHHH
Confidence 34667777766 442211 022224456667777777777765421 11 1123445677788777
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 010215 224 SVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGC 303 (515)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 303 (515)
++.+.+ .+...|..+...+.+.|+++.|.+.|.++.+ |..+...+...|+.+...++-+.....|.
T Consensus 673 ~~~~~~-----~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~ 738 (814)
T 3mkq_A 673 DLLTDE-----SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK 738 (814)
T ss_dssp HHHTTC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhh-----CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence 775443 3567778888888888888888888777653 34445555556666655554444443321
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010215 304 PPNVVTYTTVMSYLAKSGDFEEAIRITE 331 (515)
Q Consensus 304 ~~~~~~~~~li~~~~~~g~~~~a~~~~~ 331 (515)
++....+|.+.|++++|.+++.
T Consensus 739 ------~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 739 ------FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp ------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred ------hHHHHHHHHHcCCHHHHHHHHH
Confidence 1222233444455555554443
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.67 E-value=0.014 Score=42.01 Aligned_cols=68 Identities=12% Similarity=0.057 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHHHHcCCC---hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 010215 131 EHSSEIYEMMVDILGKVRQ---MDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFG 198 (515)
Q Consensus 131 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 198 (515)
+.|+..+..+..++...++ .++|..+|++....++.+..+...+...+.+.|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4577788888877764444 6999999999999999999999999999999999999999999998764
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.57 E-value=0.036 Score=50.97 Aligned_cols=32 Identities=16% Similarity=0.095 Sum_probs=15.3
Q ss_pred ccHhHHHHHHHHHHh--cCC---hhHHHHHHHHHHHC
Q 010215 270 PCVISYSTIIQSYCR--QYN---FSKVYELLDEMQAQ 301 (515)
Q Consensus 270 ~~~~~~~~li~~~~~--~g~---~~~A~~~~~~m~~~ 301 (515)
.+...|...+++... .++ ..+|+.+|++..+.
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l 228 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS 228 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 345555555544322 222 34555666655554
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.44 E-value=0.016 Score=42.02 Aligned_cols=58 Identities=14% Similarity=0.227 Sum_probs=44.8
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010215 140 MVDILGKVRQMDQMRALLEEMSKGHIVTLN-TIAKVMRRFSGAGQWEDAVRTFDELGTF 197 (515)
Q Consensus 140 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 197 (515)
....+.+.|++++|.+.|++..+.++.+.. ++..+..+|...|++++|++.|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 345566778888888888888777777777 7777778888888888888888887765
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.41 E-value=0.23 Score=45.69 Aligned_cols=64 Identities=13% Similarity=-0.012 Sum_probs=33.6
Q ss_pred cHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010215 271 CVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIV 336 (515)
Q Consensus 271 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 336 (515)
+..+|..+...+...|++++|+..++++...+ |+...|..+...+.-.|++++|.+.+++....
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 44445544444444555555555555555543 44444444455555555555555555555543
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.40 E-value=0.013 Score=56.01 Aligned_cols=61 Identities=3% Similarity=-0.076 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHH-----CC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010215 273 ISYSTIIQSYCRQYNFSKVYELLDEMQA-----QG-CPPN-VVTYTTVMSYLAKSGDFEEAIRITEKM 333 (515)
Q Consensus 273 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g-~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~ 333 (515)
.+++.|..+|...|++++|+.++++..+ .| -.|+ ..+++.+...|...|++++|+.++++.
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3455555555555555555555554432 11 1111 233445555555555555555555444
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.31 E-value=0.018 Score=55.15 Aligned_cols=87 Identities=8% Similarity=-0.066 Sum_probs=39.7
Q ss_pred HHccCChhHHHHHHHHHHhCC---CCc----cHhHHHHHHHHHHhcCChhHHHHHHHHHHH-----CC-CCCC-HHHHHH
Q 010215 247 WCKINRVDEAQWTIQEMKGHG---CHP----CVISYSTIIQSYCRQYNFSKVYELLDEMQA-----QG-CPPN-VVTYTT 312 (515)
Q Consensus 247 ~~~~g~~~~A~~~~~~~~~~~---~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g-~~~~-~~~~~~ 312 (515)
+.+.|++++|+.++++..+.. +.| ...+++.+...|...|++++|+.++++... .| ..|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 334455555555555554321 111 123455555555555555555555554432 11 1111 234445
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 010215 313 VMSYLAKSGDFEEAIRITEKM 333 (515)
Q Consensus 313 li~~~~~~g~~~~a~~~~~~~ 333 (515)
+...|...|++++|+.++++.
T Consensus 377 La~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHH
Confidence 555555555555555555544
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.26 E-value=0.011 Score=56.53 Aligned_cols=84 Identities=6% Similarity=-0.126 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHHhhC---CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHhhc----C----CCCChhhHHHHHHH
Q 010215 182 GQWEDAVRTFDELGTF---GLEK----NTETMNLLLDTLCKEGKVELARSVFLELKS----C----IPPNAHTFNIFIHG 246 (515)
Q Consensus 182 g~~~~A~~~~~~m~~~---g~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~----~~~~~~~~~~li~~ 246 (515)
|++++|+.++++..+. -+.| -..+++.+..+|...|++++|+.++++... . .|....+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4566666666554331 1112 234566777777777777777777766211 1 12224567777778
Q ss_pred HHccCChhHHHHHHHHHHh
Q 010215 247 WCKINRVDEAQWTIQEMKG 265 (515)
Q Consensus 247 ~~~~g~~~~A~~~~~~~~~ 265 (515)
|...|++++|+.++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 8888888888877777653
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.20 E-value=0.078 Score=41.77 Aligned_cols=94 Identities=12% Similarity=0.073 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcC---ChHHHHHHHHHHHHHcCCCCC--CHHHHHHHHHHHHhcCCHH
Q 010215 394 HEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTG---KTDECLSQLLDDMVNKHHLSL--DITTYTLVIHGLCRANKCE 468 (515)
Q Consensus 394 ~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~ 468 (515)
...+.+-|.+....+ .++..+-..+..++++++ ++++++ .++++..+.. .| +...+-.+.-++.+.|+++
T Consensus 14 l~~~~~~y~~e~~~~--~~~~~~~F~ya~~Lv~S~~~~~~~~gI-~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRSKYNDDIRKGI-VLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHTCSSHHHHHHHH-HHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHccC--CCcHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHhcC--CccchHHHHHHHHHHHHHccCHH
Confidence 345566666666655 467777777778888877 566888 7888877742 23 2344445666778888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010215 469 WAYLLFKEMIGHDITPRYQTCRLILD 494 (515)
Q Consensus 469 ~A~~~~~~m~~~~~~p~~~~~~~ll~ 494 (515)
+|.+.++.+++ +.|+..--..+..
T Consensus 89 ~A~~y~~~lL~--ieP~n~QA~~Lk~ 112 (152)
T 1pc2_A 89 KALKYVRGLLQ--TEPQNNQAKELER 112 (152)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCCCHHHHHHHH
Confidence 88888888886 6676544444443
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.19 E-value=0.044 Score=39.60 Aligned_cols=66 Identities=14% Similarity=0.168 Sum_probs=48.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhH
Q 010215 174 VMRRFSGAGQWEDAVRTFDELGTFGLEKNTE-TMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTF 240 (515)
Q Consensus 174 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 240 (515)
....+.+.|++++|++.|++..+.. +.+.. .+..+..++...|++++|.+.|++.....|.+..++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3567778888888888888887753 33566 778888888888888888888888554444455444
No 220
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.24 Score=40.12 Aligned_cols=100 Identities=11% Similarity=0.148 Sum_probs=47.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhH
Q 010215 176 RRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDE 255 (515)
Q Consensus 176 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 255 (515)
....+.|+++.|.++.+.+ .+...|..|.......|+++-|++.|..... +..+.-.|.-.|+.+.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHH
Confidence 3344455555555554443 2344555555555555555555555555432 3334444444555544
Q ss_pred HHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHH
Q 010215 256 AQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELL 295 (515)
Q Consensus 256 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 295 (515)
..++-+.....| -++.....+...|++++++++|
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHH
Confidence 444433333332 1333334444455555555554
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.16 E-value=0.036 Score=52.97 Aligned_cols=90 Identities=10% Similarity=0.029 Sum_probs=62.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCC---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHhhc----CC----CCChhh
Q 010215 175 MRRFSGAGQWEDAVRTFDELGTFG---LEK----NTETMNLLLDTLCKEGKVELARSVFLELKS----CI----PPNAHT 239 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g---~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~----~~~~~~ 239 (515)
+..+.+.|++++|++++++..+.. +.| ...+++.+..+|...|++++|+.++++... .+ |....+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667788888888888776431 122 234677788888888888888888877321 12 223456
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHH
Q 010215 240 FNIFIHGWCKINRVDEAQWTIQEMK 264 (515)
Q Consensus 240 ~~~li~~~~~~g~~~~A~~~~~~~~ 264 (515)
++.|...|...|++++|+.++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 7888888888888888888888764
No 222
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.09 E-value=0.33 Score=42.82 Aligned_cols=84 Identities=7% Similarity=0.038 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHhCCCCcc---HhHHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHH
Q 010215 254 DEAQWTIQEMKGHGCHPC---VISYSTIIQSYCRQ-----YNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKS-GDFE 324 (515)
Q Consensus 254 ~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~ 324 (515)
..|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++..+.+..-+..++......++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4555666666554 243 44667777777663 77777777777777653221355556666666663 7777
Q ss_pred HHHHHHHHHHhcCCC
Q 010215 325 EAIRITEKMKIVGSK 339 (515)
Q Consensus 325 ~a~~~~~~~~~~~~~ 339 (515)
.+.+.+++..+....
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 777777777765544
No 223
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.00 E-value=0.35 Score=36.78 Aligned_cols=140 Identities=13% Similarity=0.050 Sum_probs=95.3
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHH
Q 010215 178 FSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQ 257 (515)
Q Consensus 178 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 257 (515)
+.-.|..++..++..+... ..+..-||.++.-....-+-+-..++++.+-+-+.. ..+|++....
T Consensus 17 ~ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi------------s~C~NlKrVi 81 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL------------DKCQNLKSVV 81 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG------------GGCSCTHHHH
T ss_pred HHHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhhcCc------------HhhhcHHHHH
Confidence 4456778888888877766 335666777776666666767777777776543322 2355555555
Q ss_pred HHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010215 258 WTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVG 337 (515)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 337 (515)
..+-.+- .+.......++.....|+-|+-.+++..+.. +.+|++.....+..+|.+.|+..++.+++.+.-+.|
T Consensus 82 ~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 5544432 2445566777778888888888888887544 346777888888888888888888888888887777
Q ss_pred C
Q 010215 338 S 338 (515)
Q Consensus 338 ~ 338 (515)
+
T Consensus 156 ~ 156 (172)
T 1wy6_A 156 E 156 (172)
T ss_dssp C
T ss_pred h
Confidence 4
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.88 E-value=0.55 Score=37.98 Aligned_cols=97 Identities=20% Similarity=0.264 Sum_probs=47.5
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 010215 318 AKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKA 397 (515)
Q Consensus 318 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 397 (515)
...|+++.|.++.+.+ .+...|..|.+...+.|+++-|.+.|. ...+ +..+.-.|.-.|+.+.-
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~-~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQ-TQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHH-HTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHH-HhCC---------HHHHHHHHHHhCCHHHH
Confidence 3455666665555443 244556666666666666666666665 3321 22333334444555554
Q ss_pred HHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 010215 398 FHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLL 438 (515)
Q Consensus 398 ~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 438 (515)
.++-+.....| -++.....+...|++++++ +++
T Consensus 80 ~kla~iA~~~g-------~~n~af~~~l~lGdv~~~i-~lL 112 (177)
T 3mkq_B 80 SKMQNIAQTRE-------DFGSMLLNTFYNNSTKERS-SIF 112 (177)
T ss_dssp HHHHHHHHHTT-------CHHHHHHHHHHHTCHHHHH-HHH
T ss_pred HHHHHHHHHCc-------cHHHHHHHHHHcCCHHHHH-HHH
Confidence 44444444433 1233333444556666655 444
No 225
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.86 E-value=0.41 Score=36.41 Aligned_cols=138 Identities=13% Similarity=0.112 Sum_probs=76.2
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 010215 319 KSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAF 398 (515)
Q Consensus 319 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 398 (515)
-.|..+++.++..+.... .+..-||-+|.-....-+-+...++++ .+-.. -|. ...|+.....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd-~IGki---FDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLD-KIGSY---FDL----------DKCQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHH-HHGGG---SCG----------GGCSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHH-HHhhh---cCc----------HhhhcHHHHH
Confidence 356667777776666542 334445545444444444444455554 33221 111 1234555555
Q ss_pred HHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010215 399 HVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMI 478 (515)
Q Consensus 399 ~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 478 (515)
..+-.+ .-+...+...+......|+-|+ ++++...+.. ..+|++...-.+..+|.+.|+..+|.+++++..
T Consensus 82 ~C~~~~------n~~se~vd~ALd~lv~~~KkDq-Ldki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 82 ECGVIN------NTLNEHVNKALDILVIQGKRDK-LEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp HHHHHT------TCCCHHHHHHHHHHHHTTCHHH-HHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHh------cchHHHHHHHHHHHHHhccHhH-HHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 555443 1233445555666667777666 3366666433 345666677777777777777777777777777
Q ss_pred hCCC
Q 010215 479 GHDI 482 (515)
Q Consensus 479 ~~~~ 482 (515)
++|+
T Consensus 153 ~kG~ 156 (172)
T 1wy6_A 153 KKGE 156 (172)
T ss_dssp HTTC
T ss_pred Hhhh
Confidence 7664
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.85 E-value=0.075 Score=39.09 Aligned_cols=25 Identities=0% Similarity=-0.097 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 010215 170 TIAKVMRRFSGAGQWEDAVRTFDEL 194 (515)
Q Consensus 170 ~~~~li~~~~~~g~~~~A~~~~~~m 194 (515)
.+..+...+.+.|++..|..+|+..
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~A 31 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQA 31 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHH
Confidence 3334444444444444444444443
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.84 E-value=0.17 Score=36.21 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010215 395 EKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVN 443 (515)
Q Consensus 395 ~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 443 (515)
++|..++++..+.. +-+......+...+...|++++|+ ..|+++.+
T Consensus 26 ~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai-~~w~~~l~ 71 (93)
T 3bee_A 26 DEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAI-DTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHT
T ss_pred HHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHh
Confidence 44444444444422 222333333334444444444444 44444433
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.62 E-value=0.13 Score=37.69 Aligned_cols=66 Identities=9% Similarity=0.024 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHhcC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010215 132 HSSEIYEMMVDILGKVRQMDQMRALLEEMSKG-------HIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTF 197 (515)
Q Consensus 132 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 197 (515)
.++.-+..|...+.+.|+++.|...|+...+. +......+..+..++.+.|++++|+..+++..+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 46677888999999999999999999987552 2345677788888999999999999999888874
No 229
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.51 E-value=0.089 Score=41.43 Aligned_cols=77 Identities=13% Similarity=0.038 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHH
Q 010215 152 QMRALLEEMSKGHIVTLNTIAKVMRRFSGAG---QWEDAVRTFDELGTFGLEK--NTETMNLLLDTLCKEGKVELARSVF 226 (515)
Q Consensus 152 ~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~~--~~~~~~~ll~~~~~~~~~~~a~~~~ 226 (515)
.+++-|.+....+.++..+...+..++++.+ +.++++.+|++..+.. .| +...+-.+.-+|.+.|++++|.+.+
T Consensus 16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3444444444444455555555555555555 3445555555555432 12 1223333444455555555555555
Q ss_pred HHh
Q 010215 227 LEL 229 (515)
Q Consensus 227 ~~~ 229 (515)
+.+
T Consensus 95 ~~l 97 (152)
T 1pc2_A 95 RGL 97 (152)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.82 E-value=0.29 Score=43.13 Aligned_cols=88 Identities=15% Similarity=0.126 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhCCCCCCC---HHhHHHHHHHHHh-----cCChHHHHHHHHHHHHHcCCCCC--CHHHHHHHHHHHHh
Q 010215 394 HEKAFHVLEEMNKLEHCKPN---VQTFHPLLKSCFK-----TGKTDECLSQLLDDMVNKHHLSL--DITTYTLVIHGLCR 463 (515)
Q Consensus 394 ~~~A~~~~~~m~~~~~~~p~---~~~~~~ll~~~~~-----~g~~~~A~~~~~~~~~~~~~~~p--~~~~~~~li~~~~~ 463 (515)
...|...+++..+ +.|+ ...|..+...|.. -|+.++|. +.|++..+ +.| +..++....+.+++
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~-~~ferAL~---LnP~~~id~~v~YA~~l~~ 251 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAH-TAFEHLTR---YCSAHDPDHHITYADALCI 251 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHH-HHHHHHHH---HCCTTCSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHH-HHHHHHHH---hCCCCCchHHHHHHHHHHH
Confidence 3456666666666 3455 4456666666666 37777776 77777776 234 25556666677766
Q ss_pred c-CCHHHHHHHHHHHHhCCCC--CCHHH
Q 010215 464 A-NKCEWAYLLFKEMIGHDIT--PRYQT 488 (515)
Q Consensus 464 ~-g~~~~A~~~~~~m~~~~~~--p~~~~ 488 (515)
. |+.++|.+.+++.+..+.. |+...
T Consensus 252 ~~gd~~~a~~~L~kAL~a~p~~~P~~~l 279 (301)
T 3u64_A 252 PLNNRAGFDEALDRALAIDPESVPHNKL 279 (301)
T ss_dssp TTTCHHHHHHHHHHHHHCCGGGCSSCHH
T ss_pred hcCCHHHHHHHHHHHHcCCCCCCCChhH
Confidence 4 7777777777777765544 44433
No 231
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.41 E-value=5.7 Score=41.47 Aligned_cols=154 Identities=9% Similarity=-0.006 Sum_probs=68.1
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCH
Q 010215 246 GWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYT--TVMSYLAKSGDF 323 (515)
Q Consensus 246 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~ 323 (515)
.+.-.|+-+....++..+.+.. .-+..-...+.-++...|+.+.+..+.+.+... ..|....-. ++.-+|+..|+.
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCH
T ss_pred hhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCH
Confidence 3445555555556665555431 111111222222333556666666666665543 111111111 223345556666
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCH-HHHHHH
Q 010215 324 EEAIRITEKMKIVGSKPDSRFFNCLIY--TLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHH-EKAFHV 400 (515)
Q Consensus 324 ~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~ 400 (515)
....+++..+... ++..+-...+. ++...|+.+.+.++++ .+.+.+ .|.+.--..+..+....|.. .+++++
T Consensus 577 ~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~e~v~rlv~-~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~ 651 (963)
T 4ady_A 577 SAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDYTTVPRIVQ-LLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDV 651 (963)
T ss_dssp HHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSCSSHHHHTT-TGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred HHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCHHHHHHHHH-HHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 5555566666542 22222222222 2333455555555555 443322 23333333333444444443 456666
Q ss_pred HHHHHh
Q 010215 401 LEEMNK 406 (515)
Q Consensus 401 ~~~m~~ 406 (515)
+..+..
T Consensus 652 L~~L~~ 657 (963)
T 4ady_A 652 LDPLTK 657 (963)
T ss_dssp HHHHHT
T ss_pred HHHHcc
Confidence 666654
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.28 E-value=0.63 Score=36.23 Aligned_cols=52 Identities=8% Similarity=0.077 Sum_probs=30.1
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010215 286 YNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGS 338 (515)
Q Consensus 286 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 338 (515)
++.++|.++|+.+.+..-.- ...|......=.+.|++..|.+++...+..+.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 56666666666665432222 44444444444566777777777777666553
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.71 E-value=0.79 Score=35.69 Aligned_cols=103 Identities=20% Similarity=0.154 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHHHcCCH------HHHHHHHHHhhcCCCCChh-hHHHHHH------HHHccCChhHHHHHHHHHHhCCC
Q 010215 202 NTETMNLLLDTLCKEGKV------ELARSVFLELKSCIPPNAH-TFNIFIH------GWCKINRVDEAQWTIQEMKGHGC 268 (515)
Q Consensus 202 ~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~~~-~~~~li~------~~~~~g~~~~A~~~~~~~~~~~~ 268 (515)
|..+|-..+...-+.|+. ++..++|++.....||+.. .|...|. .+...++.++|.++|+.+.+.+-
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hK 91 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCK 91 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhH
Confidence 556666666666666666 6666777775555555431 1111111 11234789999999999866532
Q ss_pred CccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 010215 269 HPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPP 305 (515)
Q Consensus 269 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 305 (515)
. =...|-.....=.++|+.+.|.+++......+.+|
T Consensus 92 k-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 92 K-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp T-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred H-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 2 26677777777788999999999999988876654
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.68 E-value=0.48 Score=35.85 Aligned_cols=89 Identities=15% Similarity=0.101 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHH---HHHHHHHHHHHcCCCCC--CHHHHHHHHHHHHhcCCH
Q 010215 393 HHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDE---CLSQLLDDMVNKHHLSL--DITTYTLVIHGLCRANKC 467 (515)
Q Consensus 393 ~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~---A~~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~ 467 (515)
....+.+-|.+....| .|+..+--.+..++.++.+... ++ .+++++.+. + .| .....-.+.-++.+.|++
T Consensus 16 ~l~~~~~~y~~e~~~~--~~s~~~~F~yAw~Lv~S~~~~d~~~GI-~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGI-VLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHH-HHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhH
Confidence 3445555565555555 4777777777778887776655 77 777777652 1 13 223333466678888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHH
Q 010215 468 EWAYLLFKEMIGHDITPRYQT 488 (515)
Q Consensus 468 ~~A~~~~~~m~~~~~~p~~~~ 488 (515)
++|.+.++.+++ +.|+..-
T Consensus 91 ~~A~~~~~~lL~--~eP~n~Q 109 (126)
T 1nzn_A 91 EKALKYVRGLLQ--TEPQNNQ 109 (126)
T ss_dssp HHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHHHHHHHHH--hCCCCHH
Confidence 888888888886 5665433
No 235
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.04 E-value=0.69 Score=33.01 Aligned_cols=63 Identities=11% Similarity=0.136 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 010215 183 QWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIH 245 (515)
Q Consensus 183 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 245 (515)
+.-+..+-++.+....+-|++....+.+++|-+.+++..|.++++.++....+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 455777788888888889999999999999999999999999999987665555566776654
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.82 E-value=0.6 Score=35.30 Aligned_cols=75 Identities=13% Similarity=0.023 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHhhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010215 153 MRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWED---AVRTFDELGTFGLEK--NTETMNLLLDTLCKEGKVELARSVFL 227 (515)
Q Consensus 153 A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~ 227 (515)
+++-+.+....+.++..+...+..++++...... ++.+++++.+.+ .| .....-.+.-++.+.|++++|.+.++
T Consensus 20 ~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~ 98 (126)
T 1nzn_A 20 FEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVR 98 (126)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3333333333333444444444455555444433 455555544432 11 11122223334444444444444444
Q ss_pred H
Q 010215 228 E 228 (515)
Q Consensus 228 ~ 228 (515)
.
T Consensus 99 ~ 99 (126)
T 1nzn_A 99 G 99 (126)
T ss_dssp H
T ss_pred H
Confidence 4
No 237
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.61 E-value=7.3 Score=37.13 Aligned_cols=49 Identities=14% Similarity=0.276 Sum_probs=33.4
Q ss_pred CChHHHHHHHHHHhc-----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010215 148 RQMDQMRALLEEMSK-----GH-IVTLNTIAKVMRRFSGAGQWEDAVRTFDELGT 196 (515)
Q Consensus 148 g~~~~A~~~~~~~~~-----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 196 (515)
|+++.|.+.+-.+.+ .+ ..+......++..+...|+++...+.+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 677778777655543 22 24567777778888888888887777666543
No 238
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.14 E-value=0.59 Score=43.84 Aligned_cols=54 Identities=7% Similarity=0.002 Sum_probs=28.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010215 174 VMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLE 228 (515)
Q Consensus 174 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 228 (515)
++..+...|++++|+..+..+.... +.+...+..+|.++.+.|+..+|++.|+.
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~ 230 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRR 230 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3445555555555555555554432 33555555555555555555555555554
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.92 E-value=14 Score=38.70 Aligned_cols=349 Identities=8% Similarity=-0.061 Sum_probs=187.6
Q ss_pred HHHHHHHHHHcCCChHHH-HHHH-HHHhcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH--HHHHH
Q 010215 136 IYEMMVDILGKVRQMDQM-RALL-EEMSKGHIVTLNTIAKV-MRRFSGAGQWEDAVRTFDELGTFGLEKNTET--MNLLL 210 (515)
Q Consensus 136 ~~~~li~~~~~~g~~~~A-~~~~-~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~ll 210 (515)
+...+.+++..+|--.+. .... +.+.+ . .+|.-+.+. .-+....|+.++++.++......+-..+... -..+.
T Consensus 341 ~A~~f~Naf~naG~~~D~~l~~~~~Wl~k-~-~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAlla 418 (963)
T 4ady_A 341 TAVSVANGFMHAGTTDNSFIKANLPWLGK-A-QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYG 418 (963)
T ss_dssp HHHHHHHHHHTTTTCCCHHHHHCHHHHHH-C-CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcchhhhcchhhhhc-c-chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHH
Confidence 445677888888754322 2222 22222 2 345444332 4567788999999888877664211223332 23334
Q ss_pred HHHHHcCCHHHHHHHHHH-hhcCC-------CCChhhHHHHHHHHHccCCh-hHHHHHHHHHHhCCCCccHhHHH--HHH
Q 010215 211 DTLCKEGKVELARSVFLE-LKSCI-------PPNAHTFNIFIHGWCKINRV-DEAQWTIQEMKGHGCHPCVISYS--TII 279 (515)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~-~~~~~-------~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~--~li 279 (515)
-+....|..+++..++.. +.... .+....-.++.-+++-.|.- +++.+.+..+.... .+...... +|.
T Consensus 419 LGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALG 497 (963)
T 4ady_A 419 LGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND-SATSGEAAALGMG 497 (963)
T ss_dssp HHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHh
Confidence 445566665667777766 44321 11223334444444444532 45666666665532 11111122 223
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH--HHHHHHHhc
Q 010215 280 QSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMS--YLAKSGDFEEAIRITEKMKIVGSKPDSRFFN--CLIYTLGRA 355 (515)
Q Consensus 280 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~ 355 (515)
..++-.|+.+....++..+.+.. +......+.- ++...|+.+.+..+.+.+.... .|....-. ++.-+|+..
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTS
T ss_pred hhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCC
Confidence 33456677777777777766542 3333333444 4446789898888888887632 22222222 334567788
Q ss_pred CCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCCh-HHHH
Q 010215 356 SRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKT-DECL 434 (515)
Q Consensus 356 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~-~~A~ 434 (515)
|+......++. .+... ...++.-...+.-++...|+.+.+.+++..+.+.+ .|...--..+.-+....|.. .+++
T Consensus 574 Gn~~aIq~LL~-~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~--d~~VR~gAalALGli~aGn~~~~ai 649 (963)
T 4ady_A 574 GNNSAVKRLLH-VAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH--NAHVRCGTAFALGIACAGKGLQSAI 649 (963)
T ss_dssp CCHHHHHHHHH-HHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS--CHHHHHHHHHHHHHHTSSSCCHHHH
T ss_pred CCHHHHHHHHH-HhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhccCCCcHHHH
Confidence 99888888887 55543 12233333333445556788888888888777654 56655555555555556554 5667
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcC
Q 010215 435 SQLLDDMVNKHHLSLDITTYTLVIHGLCRAN---------KCEWAYLLFKEMIGHD-ITPRYQTCRLILDEVKQKH 500 (515)
Q Consensus 435 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---------~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g 500 (515)
.++..+.. .+|..+-..-+.+++.-| ++....+.+....... -.|+......+..+....|
T Consensus 650 -d~L~~L~~----D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG 720 (963)
T 4ady_A 650 -DVLDPLTK----DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAG 720 (963)
T ss_dssp -HHHHHHHT----CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTG
T ss_pred -HHHHHHcc----CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcC
Confidence 78888876 244444333333443322 4555566555554422 1233444444444554443
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.73 E-value=0.59 Score=47.61 Aligned_cols=129 Identities=13% Similarity=0.113 Sum_probs=85.0
Q ss_pred HHHHHHHHHHcCCC-hHHHHHHHHHHhcCCCCCHHHH-HHHHHHHHhcC-CHHHHHHHHHHHhhC------CCCC-CH--
Q 010215 136 IYEMMVDILGKVRQ-MDQMRALLEEMSKGHIVTLNTI-AKVMRRFSGAG-QWEDAVRTFDELGTF------GLEK-NT-- 203 (515)
Q Consensus 136 ~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~-~~li~~~~~~g-~~~~A~~~~~~m~~~------g~~~-~~-- 203 (515)
.-..|+..+.-.|+ .+.|..+|+++...++.....+ ..++..+.+.+ +--+|.+++.+..+. ...+ +.
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 44556666666777 5889999999988776433222 22233322222 233556555554321 1111 21
Q ss_pred --------HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 010215 204 --------ETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMK 264 (515)
Q Consensus 204 --------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 264 (515)
.....-.+.|...|+++.|+++-++...-.|.+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1222234556778999999999998666677888999999999999999999999998874
No 241
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.32 E-value=16 Score=39.83 Aligned_cols=85 Identities=8% Similarity=0.093 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 010215 274 SYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNV----VTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLI 349 (515)
Q Consensus 274 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 349 (515)
-|..++..+.+.+.++.++++-+...+....-+. ..|..+.+++...|++++|...+-.+.... .-......||
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--LKKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--SCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--HHHHHHHHHH
Confidence 3666777777888888888777665543211121 246777788888888888887777665443 2345566677
Q ss_pred HHHHhcCCHHH
Q 010215 350 YTLGRASRVQE 360 (515)
Q Consensus 350 ~~~~~~g~~~~ 360 (515)
...|..|..+.
T Consensus 979 ~~lce~~~~~~ 989 (1139)
T 4fhn_B 979 NQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHCCHHH
T ss_pred HHHHhCCChhh
Confidence 66666655443
No 242
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=90.94 E-value=0.00044 Score=64.88 Aligned_cols=194 Identities=10% Similarity=0.118 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 010215 133 SSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDT 212 (515)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 212 (515)
|+..|..+|....+.|.+++-.+.+....+. ......=..|+-+|++.++..+-.+++ -.||..-...+.+-
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDr 153 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDR 153 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHH
Confidence 3445556666666666666666666544331 111111122355666666654433222 23555555666666
Q ss_pred HHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHH
Q 010215 213 LCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVY 292 (515)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 292 (515)
|...|.++.|.-+|..+.. |..|...+.+.|++..|.+.-++ .-++.||..+-.+|...+++.-|.
T Consensus 154 cf~e~lYeAAKilys~isN--------~akLAstLV~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAq 219 (624)
T 3lvg_A 154 CYDEKMYDAAKLLYNNVSN--------FGRLASTLVHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQ 219 (624)
T ss_dssp HHHSCCSTTSSTTGGGSCC--------CTTTSSSSSSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTT
T ss_pred HHHccCHHHHHHHHHhCcc--------HHHHHHHHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHH
Confidence 6666666666666544322 22233344444444444332211 124445555555555555554443
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 010215 293 ELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGR 354 (515)
Q Consensus 293 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 354 (515)
-.--.+.-. || -...++..|-..|.+++.+.+++.-.... ......|+-|.-.|++
T Consensus 220 icGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsK 275 (624)
T 3lvg_A 220 MCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHS
T ss_pred Hhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHh
Confidence 322222211 11 11123344444555555555544443211 2334444444444443
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.85 E-value=1.7 Score=44.35 Aligned_cols=51 Identities=16% Similarity=0.008 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010215 448 SLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKH 500 (515)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 500 (515)
+-+..-|..|.....|.+.+++|.+.|+..+. .+-++..+.-||..|.+.+
T Consensus 610 kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~--~RFs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 610 KHSGLEWELLGLIMLRTWHWEDAVACLRTSIV--ARFDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHS--SSCCHHHHHHHHHHHHSCC
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hccCHHHHHHHHHHHHhcC
Confidence 44566799999999999999999999999986 4678889999999998876
No 244
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=90.60 E-value=1.6 Score=33.10 Aligned_cols=63 Identities=11% Similarity=0.136 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 010215 183 QWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIH 245 (515)
Q Consensus 183 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 245 (515)
+.-+..+-++.+....+-|++....+.+++|-+.+++..|.++|+.++....+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 344666777788888889999999999999999999999999999988766666666776654
No 245
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.30 E-value=2 Score=30.72 Aligned_cols=78 Identities=13% Similarity=0.173 Sum_probs=50.2
Q ss_pred hHHHHHHHHHhcCChHH--HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010215 416 TFHPLLKSCFKTGKTDE--CLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLIL 493 (515)
Q Consensus 416 ~~~~ll~~~~~~g~~~~--A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 493 (515)
.|..--..+...-+.|. .. +-++.+.. +.+.|++....+.+.+|.|.+++.-|.++++-...+ ..+...+|..++
T Consensus 10 eF~aRy~~~F~~~~iD~~e~r-rglN~l~~-~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 10 EFDARWVTYFNKPDIDAWELR-KGMNTLVG-YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHTCTTCCHHHHH-HHHHHHTT-SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHcCCcCccHHHHH-HHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 34444444555444332 22 44444444 567788888999999999999999999999887753 344455677666
Q ss_pred HHH
Q 010215 494 DEV 496 (515)
Q Consensus 494 ~~~ 496 (515)
+-+
T Consensus 87 qEl 89 (109)
T 1v54_E 87 QEL 89 (109)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 246
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=89.65 E-value=0.0011 Score=62.19 Aligned_cols=214 Identities=13% Similarity=0.077 Sum_probs=108.9
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010215 237 AHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSY 316 (515)
Q Consensus 237 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 316 (515)
+.+|..|..++.+.+.+.+|++-|-+. -|+..|..++.+..+.|.+++-++++....+..- ++..=+.++-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHH
Confidence 344555555555555555554433221 1334455555555555555555555544443321 22233445555
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhC--------------------CCCC
Q 010215 317 LAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPEN--------------------GVAP 376 (515)
Q Consensus 317 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------------------~~~~ 376 (515)
|++.+++.+-.+++. .|+..-...+.+-|...|.++.|.-+|. .+... .-..
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys-~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYN-NVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGG-GSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHH-hCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 555555433222221 2333333334444444444444444443 22110 0123
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCC-CCCHHHHH
Q 010215 377 DTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHL-SLDITTYT 455 (515)
Q Consensus 377 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-~p~~~~~~ 455 (515)
++.||-.+-.+|...+++.-|--+--.++-.. | ....++..|-..|.+++-+ .+++.-. |. ......|+
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvha----d--eL~elv~~YE~~G~f~ELI-sLlEagl---glErAHmGmFT 267 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVHA----D--ELEELINYYQDRGYFEELI-TMLEAAL---GLERAHMGMFT 267 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS----S--CCSGGGSSSSTTCCCTTST-TTHHHHT---TSTTCCHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcccH----H--HHHHHHHHHHhCCCHHHHH-HHHHHHh---CCCchhHHHHH
Confidence 56778888888888888777665555544322 1 1223555677788888766 6666553 32 23567788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 010215 456 LVIHGLCRANKCEWAYLLFKEM 477 (515)
Q Consensus 456 ~li~~~~~~g~~~~A~~~~~~m 477 (515)
-|.-.|++- ++++-.+.++-.
T Consensus 268 ELaILYsKY-~PeKlmEHlklf 288 (624)
T 3lvg_A 268 ELAILYSKF-KPQKMREHLELF 288 (624)
T ss_dssp HHHHHHHSS-CTTHHHHHHTTS
T ss_pred HHHHHHHhc-CHHHHHHHHHHH
Confidence 888888776 456555555443
No 247
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.55 E-value=12 Score=33.86 Aligned_cols=111 Identities=13% Similarity=0.062 Sum_probs=61.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHhhCCCCCCHHHHHHHHH
Q 010215 136 IYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRT----FDELGTFGLEKNTETMNLLLD 211 (515)
Q Consensus 136 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~~~~~~~~~ll~ 211 (515)
.|.++..=|.+.+++++|.+++..- ...+.+.|+...|.++ .+.+.+.++++|......++.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G--------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV--------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3445666678888888888877543 3456667776655444 355556677788777777776
Q ss_pred HHHHcCCHHHHHH-HHHH-h----hcC--CCCChhhHHHHHHHHHccCChhHHHHHH
Q 010215 212 TLCKEGKVELARS-VFLE-L----KSC--IPPNAHTFNIFIHGWCKINRVDEAQWTI 260 (515)
Q Consensus 212 ~~~~~~~~~~a~~-~~~~-~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 260 (515)
.+.....-+-.+. +.++ + +.+ -.-++.....+...|.+.+++.+|+..|
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 6665543111111 1111 0 111 2234445555556666666665555554
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.35 E-value=1.3 Score=41.47 Aligned_cols=55 Identities=11% Similarity=0.079 Sum_probs=27.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHH
Q 010215 209 LLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEM 263 (515)
Q Consensus 209 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 263 (515)
++..+...|+.+++...+..+....|.+...|..+|.++.+.|+..+|++.|+..
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444445555555555554443334445555555555555555555555555444
No 249
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.29 E-value=12 Score=33.55 Aligned_cols=111 Identities=8% Similarity=-0.004 Sum_probs=62.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH----HHHHHhhCCCCCCHHHHHHHHH
Q 010215 136 IYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVR----TFDELGTFGLEKNTETMNLLLD 211 (515)
Q Consensus 136 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~----~~~~m~~~g~~~~~~~~~~ll~ 211 (515)
.|.++..=|.+.+++++|.+++..- ...+.+.|+...|-+ +.+.+.+.+++++......++.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g--------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG--------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4455666677788888888877543 345566777665554 3455566677777777777776
Q ss_pred HHHHcCCH--------HHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHH
Q 010215 212 TLCKEGKV--------ELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTI 260 (515)
Q Consensus 212 ~~~~~~~~--------~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 260 (515)
.+.....- ..|+++-......-.-++.....+...|.+.|++.+|+..|
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 66553321 11111111111111234555666666666666666665544
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.22 E-value=15 Score=34.86 Aligned_cols=239 Identities=13% Similarity=0.105 Sum_probs=124.8
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----hcCCHHH--HHHHHHHHhh--CC-
Q 010215 128 PGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFS----GAGQWED--AVRTFDELGT--FG- 198 (515)
Q Consensus 128 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~--A~~~~~~m~~--~g- 198 (515)
.....+..+...++..+.+.|+++...+.+..+..+......+...+++.+. .....+. -+.+.+.+.. .|
T Consensus 50 ~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~k 129 (445)
T 4b4t_P 50 SDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENK 129 (445)
T ss_dssp CSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCC
T ss_pred cchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccc
Confidence 3445567788888888888888888877777766554444444444443322 1222221 1222222111 11
Q ss_pred CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CCCCC---hhhHHHHHHHHHccCChhHHHHHHHHHHh----
Q 010215 199 LEK---NTETMNLLLDTLCKEGKVELARSVFLELKS---CIPPN---AHTFNIFIHGWCKINRVDEAQWTIQEMKG---- 265 (515)
Q Consensus 199 ~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~---- 265 (515)
+-. .......|...+...|++.+|..++..+.. +..+. ...+...++.|...+++..|..++.+...
T Consensus 130 iflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~ 209 (445)
T 4b4t_P 130 IFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFK 209 (445)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc
Confidence 001 112234567777788888888888877432 11111 34566677778888888888888777532
Q ss_pred CCCCcc--HhHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHhcCC
Q 010215 266 HGCHPC--VISYSTIIQSYCRQYNFSKVYELLDEMQAQ-GCPPNVVTYTTVM----SYLAKSGDFEEAIRITEKMKIVGS 338 (515)
Q Consensus 266 ~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li----~~~~~~g~~~~a~~~~~~~~~~~~ 338 (515)
....|+ ...+...+..+...+++.+|-+.|.+.... ....|...+..++ ....-.+..+.-..+.....+...
T Consensus 210 ~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~ 289 (445)
T 4b4t_P 210 NPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNN 289 (445)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSS
T ss_pred cCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhccc
Confidence 221222 234556666677778888887777766432 1111222222111 111111111111222222222222
Q ss_pred CCCHHHHHHHHHHHHhc--CCHHHHHHHHH
Q 010215 339 KPDSRFFNCLIYTLGRA--SRVQEAVYVYQ 366 (515)
Q Consensus 339 ~~~~~~~~~li~~~~~~--g~~~~A~~~~~ 366 (515)
.++...+..++.+|... .+++.....|.
T Consensus 290 ~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~ 319 (445)
T 4b4t_P 290 LKKLESQESLVKLFTTNELMRWPIVQKTYE 319 (445)
T ss_dssp CHHHHHHHHHHHHHHHCCSSSHHHHHHHTC
T ss_pred ccccHHHHHHHHHHHhchHhhhHHHHHHHH
Confidence 34566777777777653 45666666665
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.72 E-value=17 Score=39.43 Aligned_cols=147 Identities=10% Similarity=0.064 Sum_probs=95.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCC---------------
Q 010215 312 TVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAP--------------- 376 (515)
Q Consensus 312 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------- 376 (515)
.++..+.+.+..+.+.++.... +.+....-.+..+|..+|++++|...|. ... .|+..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~-kaa-~~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFK-TTS-LVLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHH-TCC-CSCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHH-HHh-hhhcccchhhhhhccccccc
Confidence 3455566667766666554432 3344444456678889999999999998 332 11111
Q ss_pred --------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC-CCCH--HhHHHHHHHHHhcCChHHHHHHHHHHHHHcC
Q 010215 377 --------DTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHC-KPNV--QTFHPLLKSCFKTGKTDECLSQLLDDMVNKH 445 (515)
Q Consensus 377 --------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 445 (515)
-..-|..++..+.+.|.++.+.++-...++.... .++. ..|..+.+++...|++++|. ..+-.+.. .
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay-~aL~~~pd-~ 967 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH-VALMVLST-T 967 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG-HHHHHHHH-S
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH-HHHHhCCC-H
Confidence 1234677888888999999999888877764311 1221 25788889999999999998 66666654 2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHH
Q 010215 446 HLSLDITTYTLVIHGLCRANKCEW 469 (515)
Q Consensus 446 ~~~p~~~~~~~li~~~~~~g~~~~ 469 (515)
. --......+|..++..|..+.
T Consensus 968 ~--~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 968 P--LKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp S--SCHHHHHHHHHHHHHHCCHHH
T ss_pred H--HHHHHHHHHHHHHHhCCChhh
Confidence 2 234566777777776665443
No 252
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=87.77 E-value=24 Score=35.21 Aligned_cols=116 Identities=5% Similarity=-0.024 Sum_probs=67.6
Q ss_pred CCHHHHHHHHHhhchhCCCCCCHHHHH----HHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChH
Q 010215 356 SRVQEAVYVYQVEMPENGVAPDTSTFN----TMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTD 431 (515)
Q Consensus 356 g~~~~A~~~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~ 431 (515)
.+.+.|...+. ...... ..+..... .+.......+...++...+...... .++.....-.+....+.|+++
T Consensus 228 ~d~~~A~~~~~-~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~ 302 (618)
T 1qsa_A 228 QDAENARLMIP-SLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRR 302 (618)
T ss_dssp HCHHHHHHHHH-HHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHH
T ss_pred cCHHHHHHHHH-hhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHH
Confidence 37788888887 554322 22333322 2222333444355677777776553 344444444444455779999
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 432 ECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 432 ~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 479 (515)
.|. ..|+.|... .. ....-.-=+..++...|+.++|..+|+++.+
T Consensus 303 ~a~-~~~~~l~~~-~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 303 GLN-TWLARLPME-AK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHH-HHHHHSCTT-GG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHH-HHHHHcccc-cc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 988 888777541 11 1222122245577788999999999999864
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.17 E-value=5 Score=34.81 Aligned_cols=56 Identities=16% Similarity=0.043 Sum_probs=45.6
Q ss_pred HHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010215 142 DILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTF 197 (515)
Q Consensus 142 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 197 (515)
..+.+.|++++|++....-.+.+|.+...-..++..+|-.|++++|.+-++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34567888888888888888888888888888888888888888888888777663
No 254
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=85.10 E-value=5.3 Score=30.28 Aligned_cols=80 Identities=13% Similarity=0.175 Sum_probs=50.6
Q ss_pred HHhHHHHHHHHHhcCChHHHH--HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010215 414 VQTFHPLLKSCFKTGKTDECL--SQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRL 491 (515)
Q Consensus 414 ~~~~~~ll~~~~~~g~~~~A~--~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 491 (515)
..-|..--..|...-++|. + ++-++.+.. +.+.|++....+.+.+|.+.+++.-|.++++-...+ ..+...+|..
T Consensus 51 ~EeFdaRy~~~F~~~~iD~-wElrrglN~l~~-~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y 127 (152)
T 2y69_E 51 DEEFDARWVTYFNKPDIDA-WELRKGMNTLVG-YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPY 127 (152)
T ss_dssp HHHHHHHHHHHHTCTTCCH-HHHHHHHHHHTT-SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHH
T ss_pred HHHHHHHHHHHcCCcCccH-HHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHH
Confidence 3344444445555554432 2 133333433 567788888888888888888898898888887652 3455556776
Q ss_pred HHHHH
Q 010215 492 ILDEV 496 (515)
Q Consensus 492 ll~~~ 496 (515)
+++-+
T Consensus 128 ~lqEl 132 (152)
T 2y69_E 128 VIQEL 132 (152)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=82.75 E-value=7.6 Score=30.84 Aligned_cols=26 Identities=4% Similarity=-0.098 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010215 452 TTYTLVIHGLCRANKCEWAYLLFKEM 477 (515)
Q Consensus 452 ~~~~~li~~~~~~g~~~~A~~~~~~m 477 (515)
+.---+..+|.+.|++++|+.+++..
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 33334677888888888888887754
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.70 E-value=19 Score=33.98 Aligned_cols=99 Identities=13% Similarity=-0.003 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHhCC--CCccHhHHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCCCHHHHH-
Q 010215 238 HTFNIFIHGWCKINRVDEAQWTIQEMKGHG--CHPCVISYSTIIQSYCRQYNFSKVYELLDEMQA---QGCPPNVVTYT- 311 (515)
Q Consensus 238 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~~~~~~~~- 311 (515)
.+...+...|.+.|++++|.+.|.++.... ..--...+-.+++.+...+++..+...+.+... .+..|+....-
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 466778889999999999999999887642 222345677788888889999999888888654 23233322110
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHhc
Q 010215 312 -TVMSYLAKSGDFEEAIRITEKMKIV 336 (515)
Q Consensus 312 -~li~~~~~~g~~~~a~~~~~~~~~~ 336 (515)
.-...+...+++..|-..|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1111223568888888888776554
No 257
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=82.13 E-value=44 Score=33.49 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=16.0
Q ss_pred HHHHHHHcCCChHHHHHHHHHHh
Q 010215 139 MMVDILGKVRQMDQMRALLEEMS 161 (515)
Q Consensus 139 ~li~~~~~~g~~~~A~~~~~~~~ 161 (515)
++|-.+.++|.+++|.++.++..
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~ 179 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENK 179 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTG
T ss_pred HHHHHHHhcCCHHHHHHHHHHhh
Confidence 55666677777777777776654
No 258
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=81.68 E-value=4.7 Score=28.66 Aligned_cols=78 Identities=8% Similarity=-0.051 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010215 113 DWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFD 192 (515)
Q Consensus 113 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 192 (515)
.-++|..+-+|+....+ ...+--.-+..+...|++++|..+.+.....+..+|-++ +-.+.|..+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~AL-----ce~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE---EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLAL-----CEYRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHH-----HHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHH-----HHHhcccHHHHHHHHH
Confidence 45667777777753221 222222334556677777777777765553333333333 4456677777777776
Q ss_pred HHhhCC
Q 010215 193 ELGTFG 198 (515)
Q Consensus 193 ~m~~~g 198 (515)
++...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 776655
No 259
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=81.48 E-value=7 Score=31.05 Aligned_cols=57 Identities=9% Similarity=0.053 Sum_probs=35.2
Q ss_pred HHHHHHHcCCChHHHHHHHHHHhc-----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010215 139 MMVDILGKVRQMDQMRALLEEMSK-----GHIVT----LNTIAKVMRRFSGAGQWEDAVRTFDELG 195 (515)
Q Consensus 139 ~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 195 (515)
.-+..+...|.++.|+-+.+-+.. .+..+ ..++..+..++...|++.+|...|++..
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 345666777778777777666432 22212 2344555677777777777777777753
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=80.73 E-value=13 Score=26.46 Aligned_cols=86 Identities=23% Similarity=0.232 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 010215 322 DFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVL 401 (515)
Q Consensus 322 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 401 (515)
..++|..+-+.+...+. ...+--+-+..+.+.|++++|..+.+ ... .||...|-++-. .+.|..+++...+
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~-~~c----~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAH-GNP----WPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGT-TCC----CGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcC-CCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 45666666666655442 22222222355677888888887776 332 578888876643 4678888888888
Q ss_pred HHHHhCCCCCCCHHhHH
Q 010215 402 EEMNKLEHCKPNVQTFH 418 (515)
Q Consensus 402 ~~m~~~~~~~p~~~~~~ 418 (515)
.++...| .|....|.
T Consensus 92 ~~la~sg--~p~~q~Fa 106 (115)
T 2uwj_G 92 AGLGGSS--DPALADFA 106 (115)
T ss_dssp HHHHTCS--SHHHHHHH
T ss_pred HHHHhCC--CHHHHHHH
Confidence 7777776 56655554
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=80.19 E-value=14 Score=26.39 Aligned_cols=86 Identities=19% Similarity=0.200 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 010215 322 DFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVL 401 (515)
Q Consensus 322 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 401 (515)
..++|..+-+.+...+. ...+--+-+..+.+.|++++|..+.+ ... .||...|-++-. .+.|..+++...+
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~-~~c----~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGN-KLA----YPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHT-TSC----CGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcC-CCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 35666666666655442 22222222355677888888888776 333 578887776643 3567777777777
Q ss_pred HHHHhCCCCCCCHHhHH
Q 010215 402 EEMNKLEHCKPNVQTFH 418 (515)
Q Consensus 402 ~~m~~~~~~~p~~~~~~ 418 (515)
.++...| .|....|.
T Consensus 93 ~~la~sg--~p~~q~Fa 107 (116)
T 2p58_C 93 NRLARSQ--DPRIQTFV 107 (116)
T ss_dssp HHHTTCC--CHHHHHHH
T ss_pred HHHHhCC--CHHHHHHH
Confidence 7777766 56555554
No 262
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=79.77 E-value=18 Score=27.48 Aligned_cols=19 Identities=26% Similarity=0.237 Sum_probs=7.2
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 010215 176 RRFSGAGQWEDAVRTFDEL 194 (515)
Q Consensus 176 ~~~~~~g~~~~A~~~~~~m 194 (515)
-++.+.|++++|.+..+.+
T Consensus 86 vg~yklgdY~~Ar~y~d~l 104 (134)
T 3o48_A 86 IGCYKLGEYSMAKRYVDTL 104 (134)
T ss_dssp HHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHH
Confidence 3333333333333333333
No 263
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=79.24 E-value=36 Score=30.68 Aligned_cols=131 Identities=11% Similarity=0.051 Sum_probs=69.2
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHH----HHHHHHCCCCCCHHHHHHHHHHH
Q 010215 242 IFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYEL----LDEMQAQGCPPNVVTYTTVMSYL 317 (515)
Q Consensus 242 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~~~~~~~~~li~~~ 317 (515)
++..-|.+.+++++|.+++..-.. .+.+.|+...|-++ ++-+.+.++++|......++..+
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 344456677777777776544321 22233444333333 23344455666666665665555
Q ss_pred HhcCCHH-HHHHHHHHHH----hcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHh
Q 010215 318 AKSGDFE-EAIRITEKMK----IVG--SKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSH 390 (515)
Q Consensus 318 ~~~g~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 390 (515)
.....-+ .=..+.+.+. +.| ..-|+.....+...|.+.+++.+|...|- . |-.+....+..++.-+..
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-l----g~~~s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-L----GTKESPEVLARMEYEWYK 179 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-T----SCTTHHHHHHHHHHHHHH
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-h----cCCchHHHHHHHHHHHHH
Confidence 5433211 1122222222 222 34567777888889999999999988884 2 223344566555544444
Q ss_pred CC
Q 010215 391 HG 392 (515)
Q Consensus 391 ~g 392 (515)
.+
T Consensus 180 ~~ 181 (336)
T 3lpz_A 180 QD 181 (336)
T ss_dssp TS
T ss_pred hc
Confidence 33
No 264
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=77.89 E-value=4.5 Score=28.71 Aligned_cols=78 Identities=13% Similarity=0.029 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010215 113 DWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFD 192 (515)
Q Consensus 113 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 192 (515)
.-++|..+-+|+....+ ...+--.-+..+...|++++|..+.+.....+..+|-++ +-.+.|..+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~AL-----ce~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ---DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFAL-----CEWHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHH-----HHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHH-----HHHhcccHHHHHHHHH
Confidence 45667777777743221 222222334556677777777777665543333333333 4456677777777776
Q ss_pred HHhhCC
Q 010215 193 ELGTFG 198 (515)
Q Consensus 193 ~m~~~g 198 (515)
++...|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 666655
No 265
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=74.36 E-value=58 Score=30.79 Aligned_cols=128 Identities=16% Similarity=0.110 Sum_probs=92.6
Q ss_pred CcCCHHHHHHHHHHhhhCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHH
Q 010215 96 IQPSHYLVNKLIHRFKDDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVM 175 (515)
Q Consensus 96 ~~p~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li 175 (515)
+..|..+...-+.....+.+.|..+-... |++--...|..-.+.+...|++++|-++--..+++-.-+.+++..+-
T Consensus 327 v~v~e~~ivpyi~~~l~n~~lA~~lA~R~----~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk 402 (494)
T 1bpo_A 327 VCVEEENIIPYITNVLQNPDLALRMAVRN----NLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQ 402 (494)
T ss_dssp EEECTTTHHHHHHHTTCCHHHHHHHHHHT----TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHT
T ss_pred EEEccccchhhhhhccCCHHHHHHHHHhc----CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHh
Confidence 45566666555555556777777776544 55555667888888999999999999999888887777888886555
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010215 176 RRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLE 228 (515)
Q Consensus 176 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 228 (515)
..=...|...--+.+|..+.+.| +.+..--.-+++.-...|+.+..++++.+
T Consensus 403 ~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e 454 (494)
T 1bpo_A 403 SVPAQPGQTSPLLQYFGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE 454 (494)
T ss_dssp TSCCCTTSCCHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhc
Confidence 54455677777888888888887 55655445567777778888777777765
No 266
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.10 E-value=31 Score=32.53 Aligned_cols=93 Identities=10% Similarity=-0.067 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCHHHHHHH--
Q 010215 274 SYSTIIQSYCRQYNFSKVYELLDEMQAQ--GCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVG-SKPDSRFFNCL-- 348 (515)
Q Consensus 274 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l-- 348 (515)
++..+...|.+.|++++|.+.|.++... +..--...+-.++..+...+++..+...+.++...- -.++....+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5778899999999999999999999874 233335678888899999999999999999886521 12222222111
Q ss_pred --HHHHHhcCCHHHHHHHHH
Q 010215 349 --IYTLGRASRVQEAVYVYQ 366 (515)
Q Consensus 349 --i~~~~~~g~~~~A~~~~~ 366 (515)
...+...+++.+|...|-
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~ 232 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLV 232 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHH
Confidence 122345788999988887
No 267
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=73.79 E-value=57 Score=30.26 Aligned_cols=162 Identities=7% Similarity=0.008 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcC---CC--CChhhHHHHHHHHHccC-ChhHHHHHHHHHHhCCCCccHhHH--
Q 010215 204 ETMNLLLDTLCKEGKVELARSVFLELKSC---IP--PNAHTFNIFIHGWCKIN-RVDEAQWTIQEMKGHGCHPCVISY-- 275 (515)
Q Consensus 204 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~-- 275 (515)
.....|...|.+.|+.++..+++...+.- ++ ........+++.+.... ..+.-.++..+..+.. .-+-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 45567888888999999888888875432 11 12334566777776643 3333444444443211 0122334
Q ss_pred ----HHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCHHH
Q 010215 276 ----STIIQSYCRQYNFSKVYELLDEMQAQGCPPN-----VVTYTTVMSYLAKSGDFEEAIRITEKMKIV--GSKPDSRF 344 (515)
Q Consensus 276 ----~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~ 344 (515)
.-++..|...|++.+|.+++.++.+.=-..| ...+..-+..|...+++..+...+...... .+.+++.+
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 1467778888888888888887775311112 234555566777788888888888776542 22244433
Q ss_pred HHHH----HHHHH-hcCCHHHHHHHHH
Q 010215 345 FNCL----IYTLG-RASRVQEAVYVYQ 366 (515)
Q Consensus 345 ~~~l----i~~~~-~~g~~~~A~~~~~ 366 (515)
...+ ...+. ..+++..|...|-
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~ 205 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFY 205 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHH
Confidence 3222 22344 6777777777776
No 268
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=73.35 E-value=28 Score=26.43 Aligned_cols=80 Identities=9% Similarity=0.047 Sum_probs=54.8
Q ss_pred CCCHHhHHHHHHHHHhcCCh---HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 010215 411 KPNVQTFHPLLKSCFKTGKT---DECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQ 487 (515)
Q Consensus 411 ~p~~~~~~~ll~~~~~~g~~---~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 487 (515)
.|+..+--.+..++.++.+. .+++ .+++++.+. +..-....+--+.-++.+.|++++|.+..+.+++ +.|+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI-~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGV-KILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHH-HHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHH-HHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 67777776777778777654 4577 788888763 2111244455667788899999999999999886 677765
Q ss_pred HHHHHHH
Q 010215 488 TCRLILD 494 (515)
Q Consensus 488 ~~~~ll~ 494 (515)
-...|-.
T Consensus 113 QA~~Lk~ 119 (134)
T 3o48_A 113 QVGALKS 119 (134)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=71.79 E-value=9.1 Score=33.18 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=31.2
Q ss_pred HHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 010215 213 LCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 266 (515)
..+.|+++++++....-.+..|.|...-..|+..+|-.|+++.|..-++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344556666666555533344556666666666666666666666666555543
No 270
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=69.59 E-value=62 Score=28.87 Aligned_cols=124 Identities=8% Similarity=0.005 Sum_probs=67.8
Q ss_pred HHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 010215 144 LGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELAR 223 (515)
Q Consensus 144 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~ 223 (515)
-...|++=+|.+.++.+ ..-|.+.+++++|++++..-.. .+.+.|+...|-
T Consensus 23 ~I~~G~yYEAhQ~~Rtl--------------~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~ 73 (312)
T 2wpv_A 23 KIKAGDYYEAHQTLRTI--------------ANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGT 73 (312)
T ss_dssp HHHHTCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHH
T ss_pred HhhccChHHHHHHHHHH--------------HHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHH
Confidence 34456777777766543 5678888888888888654321 233445444433
Q ss_pred HH----HHHh-hcCCCCChhhHHHHHHHHHccCChh-HHHHHHHHHH----hCC--CCccHhHHHHHHHHHHhcCChhHH
Q 010215 224 SV----FLEL-KSCIPPNAHTFNIFIHGWCKINRVD-EAQWTIQEMK----GHG--CHPCVISYSTIIQSYCRQYNFSKV 291 (515)
Q Consensus 224 ~~----~~~~-~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A 291 (515)
++ .+-. +.+.+++......++..+.....-+ .=.++++++. +.| ..-++.....+...|.+.|++.+|
T Consensus 74 DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A 153 (312)
T 2wpv_A 74 DLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEA 153 (312)
T ss_dssp HHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHH
Confidence 32 2222 2345666666666666655533211 1223333332 111 112556677777777888888777
Q ss_pred HHHHH
Q 010215 292 YELLD 296 (515)
Q Consensus 292 ~~~~~ 296 (515)
...|-
T Consensus 154 ~~H~i 158 (312)
T 2wpv_A 154 ERYFM 158 (312)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76653
No 271
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=67.44 E-value=51 Score=27.10 Aligned_cols=74 Identities=7% Similarity=0.010 Sum_probs=48.7
Q ss_pred CCCCCCHHHHHHHHHHHHc--CCChHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 010215 128 PGYEHSSEIYEMMVDILGK--VRQMDQMRALLEEMSKGHI--VTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEK 201 (515)
Q Consensus 128 ~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 201 (515)
..+..|+.-...-+..--. ++...++.++|..|..+++ .....|......+-..|++.+|.++|+.-++.+-.|
T Consensus 71 ~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 71 ETYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp GGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4455566544444433222 4557788888888876554 455556666777778888888888888887777666
No 272
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=66.03 E-value=45 Score=25.99 Aligned_cols=71 Identities=8% Similarity=0.070 Sum_probs=47.4
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 010215 128 PGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHI--VTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEK 201 (515)
Q Consensus 128 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 201 (515)
..+..|+.-...-+..--.+. ++.++|..|..+++ .....|..-...+-..|++.+|.++|..-++.+-.|
T Consensus 62 ~~YknD~RyLklWl~ya~~~~---dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 62 KKYHNDPRFISYCLKFAEYNS---DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp GGGTTCHHHHHHHHHHHTTBS---CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHHHhcC---CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 345556655555444433333 37788888877665 355556666777788888888888888888777666
No 273
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=64.81 E-value=46 Score=25.62 Aligned_cols=78 Identities=8% Similarity=0.051 Sum_probs=49.8
Q ss_pred CCCHHhHHHHHHHHHhcCCh---HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 010215 411 KPNVQTFHPLLKSCFKTGKT---DECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQ 487 (515)
Q Consensus 411 ~p~~~~~~~ll~~~~~~g~~---~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 487 (515)
.|+..+--.+.+++.++.+. .+++ .+++++.+.... -.....-.+.-++.+.|++++|.+..+.+++ +.|+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI-~LLe~l~~~~~~-~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGV-KILTDIYKEAES-RRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHH-HHHHHHHHHCCS-THHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHhcCcc-chhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcH
Confidence 56766666677777776654 4577 777777763221 1233333456678888888888888888886 567654
Q ss_pred HHHHH
Q 010215 488 TCRLI 492 (515)
Q Consensus 488 ~~~~l 492 (515)
--..|
T Consensus 112 QA~~L 116 (144)
T 1y8m_A 112 QVGAL 116 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 43333
No 274
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=64.79 E-value=46 Score=28.58 Aligned_cols=80 Identities=13% Similarity=0.010 Sum_probs=34.7
Q ss_pred HHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHh--HHHHHHHHHhc
Q 010215 350 YTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQT--FHPLLKSCFKT 427 (515)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~--~~~ll~~~~~~ 427 (515)
...+..|+.+-...+++ .....--..+..-.+.+..+ +..|......++++.+.+.| ..++... -...+...+..
T Consensus 153 ~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~ 229 (285)
T 1wdy_A 153 MDAAEKGHVEVLKILLD-EMGADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHG-ADVNVRGERGKTPLILAVEK 229 (285)
T ss_dssp HHHHHHTCHHHHHHHHH-TSCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTT-CCSSCCCTTSCCHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHH-hcCCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHc
Confidence 33455677776666665 21111011122222233322 33455444455666666666 4444321 11223334455
Q ss_pred CChHH
Q 010215 428 GKTDE 432 (515)
Q Consensus 428 g~~~~ 432 (515)
|..+-
T Consensus 230 ~~~~~ 234 (285)
T 1wdy_A 230 KHLGL 234 (285)
T ss_dssp TCHHH
T ss_pred CCHHH
Confidence 66543
No 275
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=64.62 E-value=15 Score=31.81 Aligned_cols=17 Identities=24% Similarity=0.186 Sum_probs=8.4
Q ss_pred HHHHcCCChHHHHHHHH
Q 010215 142 DILGKVRQMDQMRALLE 158 (515)
Q Consensus 142 ~~~~~~g~~~~A~~~~~ 158 (515)
...++.|+++....+++
T Consensus 10 ~~A~~~g~~~~v~~Ll~ 26 (285)
T 1wdy_A 10 IKAVQNEDVDLVQQLLE 26 (285)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 33444555555555444
No 276
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=57.59 E-value=17 Score=29.56 Aligned_cols=17 Identities=12% Similarity=0.200 Sum_probs=9.2
Q ss_pred HHHHcCCHHHHHHHHHH
Q 010215 212 TLCKEGKVELARSVFLE 228 (515)
Q Consensus 212 ~~~~~~~~~~a~~~~~~ 228 (515)
..+..|+.+-+..+++.
T Consensus 78 ~A~~~~~~~~~~~Ll~~ 94 (201)
T 3hra_A 78 YAGAQGRTEILAYMLKH 94 (201)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhc
Confidence 34455666655555544
No 277
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=56.93 E-value=65 Score=24.79 Aligned_cols=24 Identities=8% Similarity=-0.002 Sum_probs=13.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHh
Q 010215 383 TMITMFSHHGHHEKAFHVLEEMNK 406 (515)
Q Consensus 383 ~li~~~~~~g~~~~A~~~~~~m~~ 406 (515)
.+.-++.+.|++++|.++.+.+.+
T Consensus 82 yLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 82 YLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344455555566666655555555
No 278
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=56.69 E-value=1.2e+02 Score=27.99 Aligned_cols=223 Identities=12% Similarity=-0.020 Sum_probs=109.6
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCcc-----HhHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHH-
Q 010215 242 IFIHGWCKINRVDEAQWTIQEMKGHGCHPC-----VISYSTIIQSYCRQYNFSKVYELLDEMQAQ--GCPPNVVTYTTV- 313 (515)
Q Consensus 242 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~l- 313 (515)
-++..|...|++.+|.+++.++.+.=-..| ...+-.-+..|...+++.++...+...... .+.+++..-..+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 467777777888887777777654210111 234555566777788888888887776532 222333322211
Q ss_pred ---HHHHH-hcCCHHHHHHHHHHHHhcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHH
Q 010215 314 ---MSYLA-KSGDFEEAIRITEKMKIVGSKPD------SRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNT 383 (515)
Q Consensus 314 ---i~~~~-~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 383 (515)
.-.+. ..+++..|...|-+..+.--..+ ...|..|.... .++..+...++.......-..|....+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl--~~~r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM--LGQSDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--TTCGGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH--cCCHHHHHHHhccccccccCCccHHHHHH
Confidence 12234 56788888777666543110111 22333332222 22222222232211111112455556666
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 010215 384 MITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCR 463 (515)
Q Consensus 384 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 463 (515)
++.+| +.+++.+...++...... +..|......+- .+. ..-.. ..+..+.+ +-...++..+...+.-
T Consensus 262 L~~a~-~~~dl~~f~~iL~~~~~~--l~~D~~l~~h~~-~L~-~~Ir~----~~L~~i~~----pYsrIsl~~iA~~l~l 328 (394)
T 3txn_A 262 VAEAS-HKRSLADFQAALKEYKKE--LAEDVIVQAHLG-TLY-DTMLE----QNLCRIIE----PYSRVQVAHVAESIQL 328 (394)
T ss_dssp HHHHH-HTTCHHHHHHHHHHSTTT--TTTSHHHHHHHH-HHH-HHHHH----HHHHHHHT----TCSEEEHHHHHHHHTC
T ss_pred HHHHH-HhCCHHHHHHHHHHHHHH--HhcChHHHHHHH-HHH-HHHHH----HHHHHHhH----hhceeeHHHHHHHHCc
Confidence 66665 467887777777765432 445553211110 000 00001 11222222 1133455555555543
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 010215 464 ANKCEWAYLLFKEMIGHD 481 (515)
Q Consensus 464 ~g~~~~A~~~~~~m~~~~ 481 (515)
..+++...+-+|...|
T Consensus 329 --s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 329 --PMPQVEKKLSQMILDK 344 (394)
T ss_dssp --CHHHHHHHHHHHHHTT
T ss_pred --CHHHHHHHHHHHHHCC
Confidence 6788888888888654
No 279
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=56.29 E-value=83 Score=25.85 Aligned_cols=48 Identities=17% Similarity=0.022 Sum_probs=22.3
Q ss_pred HHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 010215 436 QLLDDMVNKHHLSL-DITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITP 484 (515)
Q Consensus 436 ~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 484 (515)
.+|..|.. .|+-- -...|......+-..|++++|.++|+.-++.+-.|
T Consensus 100 ~if~~L~~-~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 100 NTFKYMFN-KGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHH-HTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHH-CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44444444 23222 23344444444555555555555555555444444
No 280
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=56.03 E-value=63 Score=27.42 Aligned_cols=85 Identities=8% Similarity=0.085 Sum_probs=43.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 010215 279 IQSYCRQYNFSKVYELLDEMQAQ--GCPP----NVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTL 352 (515)
Q Consensus 279 i~~~~~~g~~~~A~~~~~~m~~~--g~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 352 (515)
++.+....++++|.+++++..+. +.++ +.......+..-.....-.-+..+.+++.. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 44556667777777777665431 1221 111112222222222223334444444422 44555566666777
Q ss_pred HhcCCHHHHHHHHH
Q 010215 353 GRASRVQEAVYVYQ 366 (515)
Q Consensus 353 ~~~g~~~~A~~~~~ 366 (515)
.+.|+.++|..+|-
T Consensus 102 ~rLg~~~~A~~lfL 115 (235)
T 2d2s_A 102 IKLGLPEQALDLFL 115 (235)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHCCChhHHHHHHH
Confidence 77888888877765
No 281
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=49.11 E-value=92 Score=24.23 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=11.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHh
Q 010215 208 LLLDTLCKEGKVELARSVFLEL 229 (515)
Q Consensus 208 ~ll~~~~~~~~~~~a~~~~~~~ 229 (515)
.++.-|...|+.++|.+.++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444455555555555555554
No 282
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=48.55 E-value=92 Score=26.37 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=11.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHh
Q 010215 175 MRRFSGAGQWEDAVRTFDELG 195 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~ 195 (515)
+..+....++++|++++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 445555566666665555443
No 283
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=46.96 E-value=22 Score=22.97 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=32.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 010215 136 IYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAG 182 (515)
Q Consensus 136 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g 182 (515)
.++.+++.+++..-.+++.-.+++..+++.++.+.|..-.+.+++..
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g~I~l~~ylK~vR~LaReQ 50 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRGTIPLDTFVKQGRELARQQ 50 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 45566677777667777888888877777777777766666655543
No 284
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=45.09 E-value=96 Score=23.28 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=10.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHh
Q 010215 208 LLLDTLCKEGKVELARSVFLEL 229 (515)
Q Consensus 208 ~ll~~~~~~~~~~~a~~~~~~~ 229 (515)
.++.-|...|+.++|.+.++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444444445555555555444
No 285
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=42.72 E-value=1.3e+02 Score=24.29 Aligned_cols=29 Identities=10% Similarity=-0.055 Sum_probs=13.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010215 449 LDITTYTLVIHGLCRANKCEWAYLLFKEMI 478 (515)
Q Consensus 449 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 478 (515)
++...-...+.++.+.|. .++...+.++.
T Consensus 155 ~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 155 EDGWVRQSAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp SSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 344444444555555554 34444444444
No 286
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=40.28 E-value=74 Score=25.07 Aligned_cols=69 Identities=14% Similarity=0.181 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCC
Q 010215 431 DECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGH--DITPRYQTCRLILDEVKQKHM 501 (515)
Q Consensus 431 ~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g~ 501 (515)
+.++ +-+.+..+..|+.++.. -..++..+...++.-.|.++++.+.+. +...+..|..--|..+...|.
T Consensus 14 ~~~~-~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 14 DVLL-ERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHH-HHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHH-HHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 4444 34444444467776653 334566666767777788888888765 555666666666677766664
No 287
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=39.09 E-value=1.5e+02 Score=23.92 Aligned_cols=9 Identities=22% Similarity=0.183 Sum_probs=3.3
Q ss_pred HHHHHHhcC
Q 010215 313 VMSYLAKSG 321 (515)
Q Consensus 313 li~~~~~~g 321 (515)
.+.++.+.|
T Consensus 132 a~~aL~~~~ 140 (211)
T 3ltm_A 132 AAFALGEIG 140 (211)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHcC
Confidence 333333333
No 288
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=38.59 E-value=1e+02 Score=23.07 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=14.9
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHh
Q 010215 138 EMMVDILGKVRQMDQMRALLEEMS 161 (515)
Q Consensus 138 ~~li~~~~~~g~~~~A~~~~~~~~ 161 (515)
..++.=|...|+.++|.+.++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 445555666666666666666664
No 289
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=38.10 E-value=1.1e+02 Score=23.54 Aligned_cols=58 Identities=10% Similarity=0.040 Sum_probs=38.5
Q ss_pred HHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010215 442 VNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHM 501 (515)
Q Consensus 442 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 501 (515)
.+..|+.++..= ..++..+...+ .-.|.++++.+.+.+...+..|..--|..+...|-
T Consensus 10 L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 10 LRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 344677776532 33455555556 66788888888877666777777777777766664
No 290
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=37.16 E-value=1.1e+02 Score=25.23 Aligned_cols=22 Identities=5% Similarity=-0.046 Sum_probs=10.6
Q ss_pred HHHccCChhHHHHHHHHHHhCC
Q 010215 246 GWCKINRVDEAQWTIQEMKGHG 267 (515)
Q Consensus 246 ~~~~~g~~~~A~~~~~~~~~~~ 267 (515)
..++.|+.+.+..+++.+.+.|
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcC
Confidence 3344455555555555444443
No 291
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=36.90 E-value=1.5e+02 Score=23.09 Aligned_cols=50 Identities=12% Similarity=0.046 Sum_probs=25.9
Q ss_pred HHHHHHHHHhCCCCcc-HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 010215 256 AQWTIQEMKGHGCHPC-VISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPP 305 (515)
Q Consensus 256 A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 305 (515)
+.++|..|..+|+-.. ..-|......+...|++.+|.++|+.-.+.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5555555555543222 2334444455555566666666665555554444
No 292
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=36.53 E-value=1.2e+02 Score=25.03 Aligned_cols=19 Identities=11% Similarity=-0.031 Sum_probs=8.4
Q ss_pred HhcCCHHHHHHHHHHHhhC
Q 010215 179 SGAGQWEDAVRTFDELGTF 197 (515)
Q Consensus 179 ~~~g~~~~A~~~~~~m~~~ 197 (515)
++.|+.+-...+++.+.+.
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~ 35 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQG 35 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHhc
Confidence 3445554444444443333
No 293
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=35.55 E-value=50 Score=28.78 Aligned_cols=12 Identities=25% Similarity=0.418 Sum_probs=4.9
Q ss_pred HhcCCHHHHHHH
Q 010215 318 AKSGDFEEAIRI 329 (515)
Q Consensus 318 ~~~g~~~~a~~~ 329 (515)
+..|+.+-+.-+
T Consensus 169 ~~~g~~~~v~~L 180 (285)
T 3kea_A 169 IKNGHVDMMILL 180 (285)
T ss_dssp HHTTCHHHHHHH
T ss_pred HHcChHHHHHHH
Confidence 344444433333
No 294
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=34.68 E-value=2.4e+02 Score=24.94 Aligned_cols=187 Identities=9% Similarity=0.020 Sum_probs=0.0
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010215 241 NIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKS 320 (515)
Q Consensus 241 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 320 (515)
..++.-|...|+.++|...++++......|..+....-...=.+...-+.+-.++..+.. ++-+.......+...+...
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll~~l 85 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKDL 85 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhh
Q ss_pred CC--------HHHHHHHHHHHHhcCCCCCHHHH-----------------------------------------------
Q 010215 321 GD--------FEEAIRITEKMKIVGSKPDSRFF----------------------------------------------- 345 (515)
Q Consensus 321 g~--------~~~a~~~~~~~~~~~~~~~~~~~----------------------------------------------- 345 (515)
.+ ++..-.++..+...++-|-....
T Consensus 86 dDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~eel 165 (307)
T 2zu6_B 86 PELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNHL 165 (307)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHHHH
T ss_pred hHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHHHH
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCH--HHHHHHHHHHHhCCCCCCCHHhHHH
Q 010215 346 ----NCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHH--EKAFHVLEEMNKLEHCKPNVQTFHP 419 (515)
Q Consensus 346 ----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~~~~~p~~~~~~~ 419 (515)
..++.-|...|+.++|.+.++ ++... ..........+..++-+.++. +...+++..+.+.| +-+.......
T Consensus 166 kkki~~lL~EY~~~~D~~EA~~ci~-EL~~p-~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~-~ls~~q~~~G 242 (307)
T 2zu6_B 166 VKEIDMLLKEYLLSGDISEAEHCLK-ELEVP-HFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSS-TITVDQMKRG 242 (307)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHH-HHCCG-GGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHC-SSCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHH-HcCCC-cchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCC-CCCHHHHHHH
Q ss_pred HHHHHHhcCChH
Q 010215 420 LLKSCFKTGKTD 431 (515)
Q Consensus 420 ll~~~~~~g~~~ 431 (515)
+...+....+..
T Consensus 243 f~~vl~~l~Dl~ 254 (307)
T 2zu6_B 243 YERIYNEIPDIN 254 (307)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHhccHhh
No 295
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=34.56 E-value=2e+02 Score=23.80 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=15.8
Q ss_pred CChhHHHHHHHHHHhCCCCccHhHHHHHHHHH
Q 010215 251 NRVDEAQWTIQEMKGHGCHPCVISYSTIIQSY 282 (515)
Q Consensus 251 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 282 (515)
.+.+.|+-++-+|.+.|-.|....-..++.+.
T Consensus 49 SDpDAALywLaRMl~~GEDp~~IaRRLvi~As 80 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAGEDPNFIFRRLLISAC 80 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45555555555555555444433333333333
No 296
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=33.91 E-value=1.6e+02 Score=22.69 Aligned_cols=27 Identities=7% Similarity=0.073 Sum_probs=11.1
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHH
Q 010215 284 RQYNFSKVYELLDEMQAQGCPPNVVTY 310 (515)
Q Consensus 284 ~~g~~~~A~~~~~~m~~~g~~~~~~~~ 310 (515)
..+..-.|.++++.+.+.+...+..|.
T Consensus 38 ~~~~~~sa~ei~~~l~~~~~~is~aTV 64 (150)
T 2xig_A 38 RSGTHLSPEEITHSIRQKDKNTSISSV 64 (150)
T ss_dssp HCSSCBCHHHHHHHHHHHSTTCCHHHH
T ss_pred hCCCCCCHHHHHHHHHHhCCCCCHhhH
Confidence 333344444444444444333333333
No 297
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=33.41 E-value=29 Score=21.92 Aligned_cols=24 Identities=0% Similarity=-0.042 Sum_probs=18.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCCH
Q 010215 391 HGHHEKAFHVLEEMNKLEHCKPNV 414 (515)
Q Consensus 391 ~g~~~~A~~~~~~m~~~~~~~p~~ 414 (515)
.-+++.|...|.++...|.++|+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 457888888888888777566654
No 298
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=32.50 E-value=82 Score=24.53 Aligned_cols=25 Identities=12% Similarity=0.202 Sum_probs=15.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHh
Q 010215 137 YEMMVDILGKVRQMDQMRALLEEMS 161 (515)
Q Consensus 137 ~~~li~~~~~~g~~~~A~~~~~~~~ 161 (515)
...++.=|...|+.++|.+.++++.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 3445555666666666666666664
No 299
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=32.01 E-value=1.4e+02 Score=22.93 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010215 288 FSKVYELLDEMQAQGCPPNVVTYTTVMSYLAK 319 (515)
Q Consensus 288 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 319 (515)
.-.|.++++.+.+.+...+..|.-.-++.+..
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e 64 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEE 64 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHH
Confidence 33455555555444433344333333333333
No 300
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=31.98 E-value=1.6e+02 Score=22.10 Aligned_cols=32 Identities=9% Similarity=0.144 Sum_probs=14.0
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010215 287 NFSKVYELLDEMQAQGCPPNVVTYTTVMSYLA 318 (515)
Q Consensus 287 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 318 (515)
..-.|.++++.+.+.+...+..|.-.-++.+.
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~ 64 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFE 64 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Confidence 34445555555554443334444333333333
No 301
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=31.97 E-value=1.5e+02 Score=22.71 Aligned_cols=58 Identities=10% Similarity=0.028 Sum_probs=39.4
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 010215 444 KHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMY 502 (515)
Q Consensus 444 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 502 (515)
..|+.++..= ..++..+...+..-.|.++++.+.+.+...+..|..-.|+.+...|-.
T Consensus 15 ~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 15 ETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 3677766532 345566666666777888888887766666777777777777776643
No 302
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=31.76 E-value=3.9e+02 Score=26.47 Aligned_cols=256 Identities=11% Similarity=0.061 Sum_probs=120.8
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 010215 128 PGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMN 207 (515)
Q Consensus 128 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 207 (515)
++.+.....-+.-+..+.+.+++......+.. .+.+...-.....+....|+..+|......+-..| ...+..+.
T Consensus 66 ~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~ 140 (618)
T 1qsa_A 66 PTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACD 140 (618)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHH
T ss_pred CCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHH
Confidence 44444445555566667777777666654432 23344444444566666777766766666665544 23344455
Q ss_pred HHHHHHHHcCCHH------------------HHHHHHHHhhcCCCCChh-hHHHHHHHHHccCChhHHHHHHHHHHhCCC
Q 010215 208 LLLDTLCKEGKVE------------------LARSVFLELKSCIPPNAH-TFNIFIHGWCKINRVDEAQWTIQEMKGHGC 268 (515)
Q Consensus 208 ~ll~~~~~~~~~~------------------~a~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 268 (515)
.++..+.+.|.+. .|..+... ++++.. ....++..+. +...+...... .
T Consensus 141 ~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~----l~~~~~~~a~~~~al~~---~p~~~~~~~~~---~-- 208 (618)
T 1qsa_A 141 KLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQ----MPADYQTIASAIISLAN---NPNTVLTFART---T-- 208 (618)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHT----CCGGGHHHHHHHHHHHH---CGGGHHHHHHH---S--
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHh----CCHHHHHHHHHHHHHHh---ChHhHHHHHhc---c--
Confidence 5666655554432 22222111 111211 1111222111 12222221111 0
Q ss_pred CccHh---HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHhcCCCCC
Q 010215 269 HPCVI---SYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYL----AKSGDFEEAIRITEKMKIVGSKPD 341 (515)
Q Consensus 269 ~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~----~~~g~~~~a~~~~~~~~~~~~~~~ 341 (515)
.++.. .+...+.-+.+ .+.+.|...+....+.+ ..+......+-... ...+...++...+...... ..+
T Consensus 209 ~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~ 284 (618)
T 1qsa_A 209 GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQS 284 (618)
T ss_dssp CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCC
T ss_pred CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCC
Confidence 11211 11112222333 36678888887776433 22332222222222 2334234555555554433 233
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010215 342 SRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNK 406 (515)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 406 (515)
.....-.+....+.|+++.|...|. .|...... ...-.--+..++...|+.++|..+|..+..
T Consensus 285 ~~~~e~~~r~Alr~~d~~~a~~~~~-~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 285 TSLIERRVRMALGTGDRRGLNTWLA-RLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHH-HSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHH-Hccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3333333334456688888888887 66553211 233233445566777888888888877754
No 303
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=31.40 E-value=1.7e+02 Score=22.26 Aligned_cols=32 Identities=6% Similarity=-0.142 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 010215 324 EEAIRITEKMKIVGSKPDSRFFNCLIYTLGRA 355 (515)
Q Consensus 324 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 355 (515)
-.|.++++.+.+.+...+..|...-+..+...
T Consensus 38 ~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 69 (145)
T 2fe3_A 38 PTADDIYKALEGKFPNMSVATVYNNLRVFRES 69 (145)
T ss_dssp CCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhCCCCChhhHHHHHHHHHHC
Confidence 33444444444433333333333333333333
No 304
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=30.72 E-value=2.4e+02 Score=23.60 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=25.2
Q ss_pred HHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH-hhcCCCC
Q 010215 186 DAVRTFDELGTFGLEK-NTETMNLLLDTLCKEGKVELARSVFLE-LKSCIPP 235 (515)
Q Consensus 186 ~A~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~ 235 (515)
++.++|..|...|+-. -...|......+...|++.+|..+|.. +..+..|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4445555555554433 233445555555555556666555555 4443333
No 305
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.55 E-value=3.8e+02 Score=25.87 Aligned_cols=64 Identities=6% Similarity=-0.007 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCC-CCHH----HHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010215 134 SEIYEMMVDILGKVRQMDQMRALLEEMSKGHI-VTLN----TIAKVMRRFSGAGQWEDAVRTFDELGTF 197 (515)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~ 197 (515)
..++|.+++.|...+.++.|..+.....-... .+.+ .+.-+.+.+.-.+++.+|.+.|....+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 46778888888888888888888887753321 1111 1223456667778888888877776654
No 306
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=30.54 E-value=1.3e+02 Score=25.15 Aligned_cols=52 Identities=17% Similarity=0.121 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHhCCCCcc-HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 010215 254 DEAQWTIQEMKGHGCHPC-VISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPP 305 (515)
Q Consensus 254 ~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 305 (515)
+++.++|..|...|+-.. ..-|......+...|++.+|.++|+.-.+.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 344455555555443222 2234444444445555555555555555444444
No 307
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=30.22 E-value=2e+02 Score=22.60 Aligned_cols=13 Identities=8% Similarity=-0.018 Sum_probs=6.2
Q ss_pred CCHHHHHHHHHHH
Q 010215 465 NKCEWAYLLFKEM 477 (515)
Q Consensus 465 g~~~~A~~~~~~m 477 (515)
|++-+|.+++++.
T Consensus 46 g~yfeaHEvLEe~ 58 (161)
T 2ijq_A 46 GEFHESHDCFEDE 58 (161)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHH
Confidence 4444444444444
No 308
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=29.75 E-value=1e+02 Score=25.38 Aligned_cols=12 Identities=8% Similarity=-0.139 Sum_probs=4.7
Q ss_pred hcCCHHHHHHHH
Q 010215 354 RASRVQEAVYVY 365 (515)
Q Consensus 354 ~~g~~~~A~~~~ 365 (515)
+.|+.+-+..++
T Consensus 219 ~~~~~~~v~~L~ 230 (240)
T 3eu9_A 219 QRKNVWMINHLQ 230 (240)
T ss_dssp HTTCHHHHHHHH
T ss_pred HcCcHHHHHHHH
Confidence 334444333333
No 309
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=29.17 E-value=1.8e+02 Score=21.82 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=36.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010215 445 HHLSLDITTYTLVIHGLCRAN-KCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHM 501 (515)
Q Consensus 445 ~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 501 (515)
.|+.++..= ..++..+...+ ..-.|.++++.+.+.+...+..|..--|+.+...|-
T Consensus 12 ~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 12 AGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp TTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred CCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 666666532 23455666555 666788888888776666677777666777766654
No 310
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=28.91 E-value=2.4e+02 Score=23.09 Aligned_cols=18 Identities=11% Similarity=0.220 Sum_probs=9.4
Q ss_pred cCChhHHHHHHHHHHHCC
Q 010215 285 QYNFSKVYELLDEMQAQG 302 (515)
Q Consensus 285 ~g~~~~A~~~~~~m~~~g 302 (515)
..+.|.|+-++-+|.+.|
T Consensus 27 GSDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG 44 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHcC
Confidence 344555555555555555
No 311
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=28.52 E-value=2.2e+02 Score=22.47 Aligned_cols=73 Identities=8% Similarity=0.025 Sum_probs=47.2
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 010215 128 PGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHI--VTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNT 203 (515)
Q Consensus 128 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 203 (515)
..+..|+.-...-|..--.++ ++.++|..|..+++ .....|..-...+-..|++.+|.++|..-++.+..|-.
T Consensus 57 ~~YknD~RyLklWl~ya~~~~---~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 57 KRYYSDPRFLNLWLKLGRLCN---EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp GGGTTCHHHHHHHHHHHHHCS---CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred hhhccCHHHHHHHHHHHHhcC---CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 345556655555553333333 36677888776665 34555666677777888888888888888887777743
No 312
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.89 E-value=1.8e+02 Score=22.36 Aligned_cols=32 Identities=16% Similarity=0.144 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010215 288 FSKVYELLDEMQAQGCPPNVVTYTTVMSYLAK 319 (515)
Q Consensus 288 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 319 (515)
.-.|.++++.+.+.+...+..|.-.-+..+..
T Consensus 33 h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 64 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLATVYRVLNQFDD 64 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 33444555554444333343333333333333
No 313
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=27.57 E-value=3.5e+02 Score=24.56 Aligned_cols=62 Identities=11% Similarity=0.208 Sum_probs=36.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHhCC
Q 010215 345 FNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGH--HEKAFHVLEEMNKLE 408 (515)
Q Consensus 345 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~ 408 (515)
.+.++.-|...|+.++|.+.++ ++...... .......+..++-+.++ .+...+++..+...|
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~-EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~g 283 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLK-ELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 283 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHH-HHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccCCCHHHHHHHHH-HccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence 4667777888888888888887 66532111 12334444445544332 345666666666655
No 314
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=27.04 E-value=1.9e+02 Score=22.20 Aligned_cols=58 Identities=12% Similarity=0.081 Sum_probs=32.1
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 010215 161 SKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGK 218 (515)
Q Consensus 161 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 218 (515)
.+.+.-....-..++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-
T Consensus 19 ~~~g~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 19 KKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHCC--CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 3344433333344455665555566677777777666555566665556666665554
No 315
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=26.58 E-value=1.2e+02 Score=24.93 Aligned_cols=13 Identities=23% Similarity=0.376 Sum_probs=5.3
Q ss_pred HHcCCHHHHHHHH
Q 010215 214 CKEGKVELARSVF 226 (515)
Q Consensus 214 ~~~~~~~~a~~~~ 226 (515)
+..|+.+.+..++
T Consensus 11 ~~~g~~~~v~~Ll 23 (232)
T 2rfa_A 11 AKENDVQALSKLL 23 (232)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 3444444443333
No 316
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=26.31 E-value=1.1e+02 Score=22.48 Aligned_cols=42 Identities=10% Similarity=0.059 Sum_probs=23.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 294 LLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKI 335 (515)
Q Consensus 294 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 335 (515)
+|+.+....+.|+...--.-+..+...++++.|.+++..+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444445544443333334444566777777777777654
No 317
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=26.14 E-value=5.4e+02 Score=27.10 Aligned_cols=108 Identities=6% Similarity=-0.079 Sum_probs=0.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCH------------
Q 010215 384 MITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDI------------ 451 (515)
Q Consensus 384 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~------------ 451 (515)
++..+...|.++-|.++..- ++-+...--.+..+|...|++++|. .+|++... |+..+.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~------~~~t~~~~yv~gr~~L~~ge~~~A~-~~F~kAA~--gl~~~~~~~~~~~~~~~l 886 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW------LNSDPIAVYLKALIYLKSKEAVKAV-RCFKTTSL--VLYSHTSQFAVLREFQEI 886 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG------CCSSHHHHHHHHHHHHHTTCHHHHH-HHHHTCCC--TTCSSCCSCGGGHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhh------cCCChHHHHHHHHHHHHcCCHHHHH-HHHHHHhh--hcccCcccccchhhhhhc
Q ss_pred -----------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcC
Q 010215 452 -----------TTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQ----TCRLILDEVKQKH 500 (515)
Q Consensus 452 -----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~g 500 (515)
.-|..++..+-+.+-++-+.++.+..++.--.-|.. .|..+.++.+..|
T Consensus 887 l~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 887 AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred cCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
No 318
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=25.91 E-value=2.8e+02 Score=23.03 Aligned_cols=77 Identities=13% Similarity=-0.004 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhCCCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHH
Q 010215 184 WEDAVRTFDELGTFGLEKNTE-------TMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEA 256 (515)
Q Consensus 184 ~~~A~~~~~~m~~~g~~~~~~-------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 256 (515)
.+.|+.+|+.+.+.-..++.. .-...+-.|.+.|.+++|.+++++.-...+.+...-+.|+..-.+.+.+...
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~~H~~ 167 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLAHPV 167 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCTTSHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcccHH
Q ss_pred HHHH
Q 010215 257 QWTI 260 (515)
Q Consensus 257 ~~~~ 260 (515)
+.-|
T Consensus 168 lqnF 171 (235)
T 3bu8_A 168 IQNF 171 (235)
T ss_dssp HHTC
T ss_pred HHhc
No 319
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=25.81 E-value=1.4e+02 Score=23.77 Aligned_cols=64 Identities=8% Similarity=-0.003 Sum_probs=28.9
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCccHhH---HHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCC
Q 010215 243 FIHGWCKINRVDEAQWTIQEMKGHGCHPCVIS---YSTIIQSYCR-QYNFSKVYELLDEMQAQGCPPN 306 (515)
Q Consensus 243 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~ 306 (515)
.+...+..|+.+.-.++.+.+.+.|..++... ++.|..++.. ..+.....++.+.+.+.|..++
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC
Confidence 34444555555555556666666665444321 1222222111 1223334455555566655444
No 320
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=25.44 E-value=1.3e+02 Score=27.25 Aligned_cols=25 Identities=12% Similarity=0.294 Sum_probs=14.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 010215 310 YTTVMSYLAKSGDFEEAIRITEKMK 334 (515)
Q Consensus 310 ~~~li~~~~~~g~~~~a~~~~~~~~ 334 (515)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 3455556666666666666555553
No 321
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=25.04 E-value=2.8e+02 Score=22.66 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=25.1
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 010215 319 KSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRAS 356 (515)
Q Consensus 319 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 356 (515)
+..|.+.|+-++.+|++.| .|....-..++.+.-.-|
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 4578888888888888888 665555555555544433
No 322
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=25.00 E-value=3.3e+02 Score=24.83 Aligned_cols=129 Identities=12% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC----HHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHH
Q 010215 380 TFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPN----VQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYT 455 (515)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~ 455 (515)
....++.-|...|+.++|...++++ -.|+ ...+..+..++-+.....+.+..++..+.. .++-+......
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL-----~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~-~~~ls~~~~~~ 87 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREM-----RAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQ-EGIATSDNFMQ 87 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH-----TCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-TTSSCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHh-----CCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH-CCCCCHHHHHH
Q ss_pred HHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010215 456 LVIHGLCRANKCEW----AYLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMKK 514 (515)
Q Consensus 456 ~li~~~~~~g~~~~----A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 514 (515)
.+...+....+..- |..++.++..+-+.-+..+...+-..+...+-..-...++..+.+
T Consensus 88 Gf~~lle~l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~~l~~G~~~~l~l~vl~~~~k 150 (364)
T 3l6a_A 88 AFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLESGTHFPLFLLCLQQLAK 150 (364)
T ss_dssp HHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHHHHGGGTTTTHHHHHHHHHHH
T ss_pred HHHHHHhhChHhccccccHHHHHHHHHHHHHHcCCCCHHHHHHHhcccchHHHHHHHHHHHHH
No 323
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=24.60 E-value=2.6e+02 Score=22.03 Aligned_cols=51 Identities=14% Similarity=0.139 Sum_probs=37.7
Q ss_pred HHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 010215 436 QLLDDMVNKHHLSLD-ITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQ 487 (515)
Q Consensus 436 ~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 487 (515)
.+|..|.. .++--. ...|......+-..|++.+|.++|+.-++.+-.|-..
T Consensus 81 ~if~~L~~-~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 81 DMYSYLHN-QGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp HHHHHHHH-TTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred HHHHHHHH-CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 67777777 555443 5567777777888888888888888888877777653
No 324
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=24.55 E-value=1.5e+02 Score=23.53 Aligned_cols=11 Identities=0% Similarity=0.175 Sum_probs=4.6
Q ss_pred cCCHHHHHHHH
Q 010215 355 ASRVQEAVYVY 365 (515)
Q Consensus 355 ~g~~~~A~~~~ 365 (515)
.|+.+-+..++
T Consensus 116 ~~~~~~v~~Ll 126 (201)
T 3hra_A 116 KGHIDNVKLLL 126 (201)
T ss_dssp TTCHHHHHHHH
T ss_pred cCCHHHHHHHH
Confidence 34444444333
No 325
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=24.04 E-value=2.5e+02 Score=22.84 Aligned_cols=25 Identities=8% Similarity=-0.037 Sum_probs=14.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCC
Q 010215 314 MSYLAKSGDFEEAIRITEKMKIVGS 338 (515)
Q Consensus 314 i~~~~~~g~~~~a~~~~~~~~~~~~ 338 (515)
+...+..|+.+.+..+++.+.+.|.
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCC
Confidence 3444556666666666666665543
No 326
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=23.74 E-value=1.2e+02 Score=23.13 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=6.8
Q ss_pred HHHcCCHHHHHHHH
Q 010215 213 LCKEGKVELARSVF 226 (515)
Q Consensus 213 ~~~~~~~~~a~~~~ 226 (515)
.++.|+.+....++
T Consensus 15 A~~~g~~~~v~~ll 28 (165)
T 3twr_A 15 AAKAGDVETVKKLC 28 (165)
T ss_dssp HHHHTCHHHHHHHC
T ss_pred HHHhCCHHHHHHHH
Confidence 34445555544444
No 327
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=22.93 E-value=3e+02 Score=26.85 Aligned_cols=73 Identities=12% Similarity=0.075 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHH
Q 010215 217 GKVELARSVFLELKSCIPP-NAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKV 291 (515)
Q Consensus 217 ~~~~~a~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 291 (515)
.+....+....++...+|. +..-...++..|.+.|-.+.|.++++.+-.+-+. +...+ ..+..|++.|+++.+
T Consensus 495 ~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 495 GTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp SCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred cchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 3444455555554333333 3344566777777777777777777777654322 23334 455566777776654
No 328
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=22.89 E-value=2.9e+02 Score=21.94 Aligned_cols=91 Identities=11% Similarity=-0.010 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHH
Q 010215 376 PDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYT 455 (515)
Q Consensus 376 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~ 455 (515)
++...-...+.++.+.|+.+ +...+..+.. .++...-...+.++.+.|..+ ++ ..+..+.. .++...-.
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~-~~-~~L~~~l~----d~~~~vr~ 156 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDER-AVEPLIKALK----DEDWFVRIAAAFALGEIGDER-AV-EPLIKALK----DEDGWVRQ 156 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHTCGG-GH-HHHHHHTT----CSSHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHH-HHHHHHHHHc----CCCHHHHHHHHHHHHHhCCHH-HH-HHHHHHHc----CCCHHHHH
Confidence 44444445555555555432 3333333332 344444444555555555432 23 33333332 24555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 010215 456 LVIHGLCRANKCEWAYLLFKEMI 478 (515)
Q Consensus 456 ~li~~~~~~g~~~~A~~~~~~m~ 478 (515)
..+.++.+.|. +++...+.++.
T Consensus 157 ~A~~aL~~~~~-~~~~~~L~~~l 178 (201)
T 3ltj_A 157 SAADALGEIGG-ERVRAAMEKLA 178 (201)
T ss_dssp HHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHHHHhCc-hhHHHHHHHHH
Confidence 55666666654 34555555554
No 329
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.85 E-value=2.3e+02 Score=22.09 Aligned_cols=23 Identities=13% Similarity=0.063 Sum_probs=9.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q 010215 314 MSYLAKSGDFEEAIRITEKMKIV 336 (515)
Q Consensus 314 i~~~~~~g~~~~a~~~~~~~~~~ 336 (515)
+..+...++.-.|.++++.+.+.
T Consensus 39 L~~L~~~~~h~sA~eI~~~l~~~ 61 (162)
T 4ets_A 39 LKTLYHSDTHYTPESLYMEIKQA 61 (162)
T ss_dssp HHHHHSCCSCBCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHhh
Confidence 33333333444444444444443
No 330
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=22.70 E-value=2.9e+02 Score=21.92 Aligned_cols=14 Identities=14% Similarity=0.062 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHhcC
Q 010215 343 RFFNCLIYTLGRAS 356 (515)
Q Consensus 343 ~~~~~li~~~~~~g 356 (515)
.+-...+.++.+.|
T Consensus 153 ~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 153 WVRQSAADALGEIG 166 (201)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 33333333333333
No 331
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=22.58 E-value=4.8e+02 Score=24.46 Aligned_cols=152 Identities=9% Similarity=0.080 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHh--------CCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHh
Q 010215 252 RVDEAQWTIQEMKG--------HGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGC----PPNVVTYTTVMSYLAK 319 (515)
Q Consensus 252 ~~~~A~~~~~~~~~--------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~~~~~~~~~li~~~~~ 319 (515)
..++...+++.... .++..+......++.. ..|+..+++.+++.+..... .....+...+-.+..+
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Q ss_pred c------------------------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHhhch
Q 010215 320 S------------------------GDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASR-----VQEAVYVYQVEMP 370 (515)
Q Consensus 320 ~------------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-----~~~A~~~~~~~~~ 370 (515)
. ++.+.|+.++..|.+.|..|....-..++.+.-.-|. ..-|...++ ...
T Consensus 244 ~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~-~~~ 322 (447)
T 3pvs_A 244 RSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWD-CFT 322 (447)
T ss_dssp CCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHH-HHH
T ss_pred hhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHH-HHH
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010215 371 ENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNK 406 (515)
Q Consensus 371 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 406 (515)
.-|.+--.......+-.++..-+...+...++...+
T Consensus 323 ~~g~pe~~~~l~~~~~~la~~pksn~~~~a~~~a~~ 358 (447)
T 3pvs_A 323 RVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALA 358 (447)
T ss_dssp HSCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
No 332
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=22.45 E-value=3.2e+02 Score=22.31 Aligned_cols=20 Identities=10% Similarity=0.064 Sum_probs=9.7
Q ss_pred CChhHHHHHHHHHHHCCCCC
Q 010215 286 YNFSKVYELLDEMQAQGCPP 305 (515)
Q Consensus 286 g~~~~A~~~~~~m~~~g~~~ 305 (515)
.+.|.|+-++-+|++.|-.|
T Consensus 21 SDpDAAly~LaRMl~~GEDp 40 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDP 40 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCH
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 44555555555555544443
No 333
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=22.37 E-value=1.8e+02 Score=19.30 Aligned_cols=58 Identities=14% Similarity=0.170 Sum_probs=24.6
Q ss_pred HHhCCCCccHhHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 010215 263 MKGHGCHPCVISYSTIIQSYCRQY-NFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSG 321 (515)
Q Consensus 263 ~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 321 (515)
+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344444444332 22333333332 33445555555555444444444444444444433
No 334
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=22.12 E-value=2.3e+02 Score=21.73 Aligned_cols=57 Identities=14% Similarity=0.150 Sum_probs=37.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 010215 445 HHLSLDITTYTLVIHGLCRAN-KCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMY 502 (515)
Q Consensus 445 ~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 502 (515)
.|+.++..=. .++..+...+ ..-.|.++++.+.+.+...+..|..-.|..+...|-.
T Consensus 11 ~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 11 AGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp TTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred cCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 6776665332 3455555555 5667888888887766666777777777777766643
No 335
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.36 E-value=1.4e+02 Score=22.26 Aligned_cols=46 Identities=13% Similarity=0.003 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010215 456 LVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHM 501 (515)
Q Consensus 456 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 501 (515)
.++..+...+..-.|.++++.+.+.+...+..|..-.|+.+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3455555556666777777777766555666666666666666654
No 336
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=21.24 E-value=74 Score=25.37 Aligned_cols=56 Identities=11% Similarity=0.099 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010215 132 HSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDA 187 (515)
Q Consensus 132 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 187 (515)
|....++.+++.+++..-.++++-.+++....+..+..+|..-++.+++..-+.+|
T Consensus 109 ~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~I~ld~ylK~vR~LaReQF~~ra 164 (174)
T 2p22_A 109 AKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGTIPLDTFVKQGRELARQQFLVRW 164 (174)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34456788888888888888888888888888888888887777777665444433
No 337
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=20.93 E-value=1.3e+02 Score=22.22 Aligned_cols=52 Identities=10% Similarity=-0.021 Sum_probs=33.4
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHH
Q 010215 240 FNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYEL 294 (515)
Q Consensus 240 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 294 (515)
|--.|...+..++.+-|.++++-..+.| +...|.+++-.|...=++|-++++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 4445556666777777777777777665 556666666666666666666554
No 338
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=20.75 E-value=4e+02 Score=22.78 Aligned_cols=82 Identities=9% Similarity=-0.051 Sum_probs=32.9
Q ss_pred HHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCc-cHhHHHHHHHHHHhcCChhH
Q 010215 212 TLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHP-CVISYSTIIQSYCRQYNFSK 290 (515)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~ 290 (515)
..+..|+.+-+..+++.-..-...+..-+...+...+..|+.+-+ +.+.+.|..+ +...-.+.+...+..|+.+-
T Consensus 101 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~ 176 (285)
T 3kea_A 101 YAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDM 176 (285)
T ss_dssp HHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHH
Confidence 344556666555555441110111222222333444455554433 3333333222 11122333444455666655
Q ss_pred HHHHHHH
Q 010215 291 VYELLDE 297 (515)
Q Consensus 291 A~~~~~~ 297 (515)
+.-+++.
T Consensus 177 v~~Ll~~ 183 (285)
T 3kea_A 177 MILLLDY 183 (285)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 5444443
No 339
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=20.69 E-value=3.5e+02 Score=22.08 Aligned_cols=44 Identities=14% Similarity=0.055 Sum_probs=29.0
Q ss_pred HHHHHHc---cCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcC
Q 010215 243 FIHGWCK---INRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQY 286 (515)
Q Consensus 243 li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 286 (515)
+|+++.| ..+.+.|+-++-+|.+.|-.|....-..++-+.-.-|
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 4444443 5788899999999998886666555555555554444
No 340
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=20.37 E-value=1.6e+02 Score=24.77 Aligned_cols=23 Identities=9% Similarity=-0.080 Sum_probs=12.3
Q ss_pred HHHccCChhHHHHHHHHHHhCCC
Q 010215 246 GWCKINRVDEAQWTIQEMKGHGC 268 (515)
Q Consensus 246 ~~~~~g~~~~A~~~~~~~~~~~~ 268 (515)
..++.|+.+....+++.+.+.|.
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~ 33 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKK 33 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCC
Confidence 34455666665555555554443
No 341
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=20.28 E-value=3.3e+02 Score=21.64 Aligned_cols=24 Identities=8% Similarity=0.079 Sum_probs=10.2
Q ss_pred HHHHHHHHHhcCC-HHHHHHHHHHH
Q 010215 454 YTLVIHGLCRANK-CEWAYLLFKEM 477 (515)
Q Consensus 454 ~~~li~~~~~~g~-~~~A~~~~~~m 477 (515)
..-++..+.+.|- ++.+..+++++
T Consensus 139 ~~K~~~~L~rrGF~~~~I~~vl~~l 163 (177)
T 3e3v_A 139 QNKIKQSLLTKGFSYDIIDTIIQEL 163 (177)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHC
Confidence 3344444444442 33334444444
Done!