Query 010216
Match_columns 515
No_of_seqs 199 out of 923
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 22:25:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010216.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010216hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dnz_A Probable RNA-binding pr 97.5 0.00074 2.5E-08 53.4 10.8 82 187-350 3-86 (95)
2 2lxi_A RNA-binding protein 10; 97.5 0.00029 9.8E-09 55.7 8.2 35 189-228 1-35 (91)
3 4fxv_A ELAV-like protein 1; RN 97.5 0.00037 1.3E-08 56.0 8.7 78 187-346 17-96 (99)
4 2lkz_A RNA-binding protein 5; 97.5 0.00039 1.3E-08 55.4 8.4 40 186-229 6-45 (95)
5 4a8x_A RNA-binding protein wit 97.4 0.00051 1.8E-08 53.4 8.1 82 187-349 2-85 (88)
6 3s8s_A Histone-lysine N-methyl 97.4 0.00058 2E-08 56.0 8.6 80 187-348 4-85 (110)
7 1x5s_A Cold-inducible RNA-bind 97.4 0.0017 5.7E-08 52.1 11.2 81 186-348 9-91 (102)
8 3p5t_L Cleavage and polyadenyl 97.4 0.0005 1.7E-08 54.0 7.4 81 190-350 2-84 (90)
9 2dgp_A Bruno-like 4, RNA bindi 97.4 0.0023 8E-08 51.6 11.7 82 186-349 10-96 (106)
10 1whw_A Hypothetical protein ri 97.3 0.0015 5.2E-08 52.1 10.2 82 187-350 6-89 (99)
11 2jrs_A RNA-binding protein 39; 97.3 0.001 3.6E-08 54.2 9.3 84 186-351 23-108 (108)
12 1x5t_A Splicing factor 3B subu 97.3 0.0014 4.9E-08 51.8 9.8 80 187-348 3-85 (96)
13 3mdf_A Peptidyl-prolyl CIS-tra 97.3 0.001 3.5E-08 51.3 8.4 36 187-228 5-40 (85)
14 2x1f_A MRNA 3'-END-processing 97.3 0.0015 5.2E-08 51.8 9.5 79 189-349 2-82 (96)
15 1x5u_A Splicing factor 3B subu 97.3 0.0023 7.9E-08 51.6 10.6 82 186-349 12-95 (105)
16 2dgs_A DAZ-associated protein 97.3 0.0026 8.9E-08 50.7 10.8 38 186-229 7-44 (99)
17 3bs9_A Nucleolysin TIA-1 isofo 97.2 0.0011 3.8E-08 51.4 8.2 38 187-230 4-41 (87)
18 2dgv_A HnRNP M, heterogeneous 97.2 0.0017 5.8E-08 51.0 9.0 37 186-228 5-41 (92)
19 2cpz_A CUG triplet repeat RNA- 97.2 0.0021 7.3E-08 52.8 9.9 38 186-229 22-59 (115)
20 3md1_A Nuclear and cytoplasmic 97.2 0.0017 5.9E-08 49.8 8.6 76 190-347 2-79 (83)
21 1fxl_A Paraneoplastic encephal 97.2 0.0022 7.6E-08 56.0 10.4 101 188-370 1-109 (167)
22 2e5h_A Zinc finger CCHC-type a 97.2 0.0019 6.6E-08 50.8 9.0 37 186-228 13-49 (94)
23 2fy1_A RNA-binding motif prote 97.2 0.0033 1.1E-07 51.9 10.8 37 187-229 5-41 (116)
24 2do4_A Squamous cell carcinoma 97.2 0.0021 7.1E-08 51.4 9.3 81 186-349 14-96 (100)
25 4f25_A Polyadenylate-binding p 97.1 0.0017 5.7E-08 53.6 8.7 36 188-229 4-39 (115)
26 2cph_A RNA binding motif prote 97.1 0.0036 1.2E-07 50.6 10.5 84 186-350 12-98 (107)
27 2cqi_A Nucleolysin TIAR; RNA r 97.1 0.0051 1.7E-07 49.3 11.3 39 186-230 12-50 (103)
28 2cq3_A RNA-binding protein 9; 97.1 0.0052 1.8E-07 49.3 11.3 38 186-229 12-49 (103)
29 2div_A TRNA selenocysteine ass 97.1 0.0039 1.3E-07 49.6 10.4 39 186-230 6-45 (99)
30 2cqc_A Arginine/serine-rich sp 97.1 0.0023 7.8E-08 50.5 8.8 38 186-229 12-49 (95)
31 2dnh_A Bruno-like 5, RNA bindi 97.1 0.0034 1.2E-07 50.6 9.9 38 186-229 12-49 (105)
32 2dgo_A Cytotoxic granule-assoc 97.1 0.004 1.4E-07 51.1 10.2 39 186-230 12-50 (115)
33 2cqb_A Peptidyl-prolyl CIS-tra 97.0 0.0027 9.2E-08 50.9 8.9 37 186-228 9-45 (102)
34 3ucg_A Polyadenylate-binding p 97.0 0.0025 8.6E-08 49.6 8.4 37 188-230 5-41 (89)
35 1b7f_A Protein (SXL-lethal pro 97.0 0.003 1E-07 55.3 9.7 101 188-370 2-110 (168)
36 1x4h_A RNA-binding protein 28; 97.0 0.0047 1.6E-07 50.2 10.2 37 187-229 13-49 (111)
37 2dnm_A SRP46 splicing factor; 97.0 0.0033 1.1E-07 50.5 9.0 37 186-228 10-46 (103)
38 2ywk_A Putative RNA-binding pr 97.0 0.0025 8.5E-08 50.3 8.2 38 186-229 13-50 (95)
39 2cqg_A TDP-43, TAR DNA-binding 97.0 0.0026 8.8E-08 51.1 8.4 38 187-230 13-50 (103)
40 2cqd_A RNA-binding region cont 97.0 0.0039 1.3E-07 51.3 9.7 37 186-228 14-50 (116)
41 1p27_B RNA-binding protein 8A; 97.0 0.0042 1.4E-07 50.1 9.6 39 186-230 20-58 (106)
42 1wi8_A EIF-4B, eukaryotic tran 97.0 0.0035 1.2E-07 50.4 9.0 37 186-229 12-48 (104)
43 1p1t_A Cleavage stimulation fa 97.0 0.0023 7.9E-08 51.4 7.9 82 187-350 6-89 (104)
44 2d9p_A Polyadenylate-binding p 97.0 0.0032 1.1E-07 50.6 8.7 39 186-230 12-50 (103)
45 2cpf_A RNA binding motif prote 97.0 0.0028 9.5E-08 50.4 8.2 39 187-231 3-41 (98)
46 2cqp_A RNA-binding protein 12; 96.9 0.0018 6.1E-08 51.5 6.7 39 312-350 56-96 (98)
47 1oo0_B CG8781-PA, drosophila Y 96.9 0.0047 1.6E-07 50.2 9.4 37 186-228 23-59 (110)
48 2cq0_A Eukaryotic translation 96.9 0.0026 9.1E-08 51.1 7.7 38 186-229 12-49 (103)
49 3ulh_A THO complex subunit 4; 96.9 0.0039 1.3E-07 50.4 8.7 40 185-230 25-64 (107)
50 2kt5_A RNA and export factor-b 96.9 0.0056 1.9E-07 51.0 9.9 37 187-229 33-69 (124)
51 2la6_A RNA-binding protein FUS 96.9 0.0058 2E-07 48.6 9.5 33 186-224 10-42 (99)
52 2dhg_A TRNA selenocysteine ass 96.9 0.0053 1.8E-07 49.3 9.4 40 186-230 6-45 (104)
53 1h2v_Z 20 kDa nuclear CAP bind 96.9 0.004 1.4E-07 54.2 9.1 81 187-349 37-119 (156)
54 2err_A Ataxin-2-binding protei 96.9 0.0054 1.9E-07 49.9 9.3 37 186-228 26-62 (109)
55 3ex7_B RNA-binding protein 8A; 96.9 0.0062 2.1E-07 50.8 9.8 38 186-229 19-56 (126)
56 2dha_A FLJ20171 protein; RRM d 96.8 0.0019 6.6E-08 54.0 6.5 40 187-230 21-62 (123)
57 3s7r_A Heterogeneous nuclear r 96.8 0.0032 1.1E-07 48.7 7.5 39 186-230 8-46 (87)
58 2ki2_A SS-DNA binding protein 96.8 0.0025 8.6E-08 49.7 6.8 34 190-229 2-35 (90)
59 2ku7_A MLL1 PHD3-CYP33 RRM chi 96.8 0.0059 2E-07 51.9 9.7 38 186-229 60-97 (140)
60 1s79_A Lupus LA protein; RRM, 96.8 0.0035 1.2E-07 50.6 7.7 37 187-229 9-45 (103)
61 1uaw_A Mouse-musashi-1; RNP-ty 96.8 0.0033 1.1E-07 47.3 7.0 34 190-229 1-34 (77)
62 3ns6_A Eukaryotic translation 96.8 0.0023 7.7E-08 51.3 6.4 35 312-346 53-90 (100)
63 2dgw_A Probable RNA-binding pr 96.8 0.0063 2.2E-07 47.5 8.8 38 186-230 7-44 (91)
64 2dnp_A RNA-binding protein 14; 96.8 0.012 4.1E-07 45.8 10.4 36 186-227 6-41 (90)
65 2kxn_B Transformer-2 protein h 96.8 0.005 1.7E-07 51.9 8.6 79 186-346 43-123 (129)
66 2cpe_A RNA-binding protein EWS 96.8 0.0089 3E-07 48.8 9.9 37 311-347 63-101 (113)
67 2dng_A Eukaryotic translation 96.7 0.0061 2.1E-07 48.9 8.7 38 186-230 12-49 (103)
68 2dgx_A KIAA0430 protein; RRM d 96.7 0.014 4.9E-07 46.0 10.8 37 186-228 6-46 (96)
69 2cpj_A Non-POU domain-containi 96.7 0.011 3.9E-07 46.9 10.0 77 186-350 12-90 (99)
70 2f3j_A RNA and export factor b 96.7 0.0077 2.6E-07 53.8 10.0 86 187-355 86-173 (177)
71 2khc_A Testis-specific RNP-typ 96.7 0.0045 1.5E-07 51.1 7.8 37 186-228 37-73 (118)
72 3lqv_A PRE-mRNA branch site pr 96.7 0.012 4.1E-07 48.2 10.3 95 187-368 6-102 (115)
73 2a3j_A U1 small nuclear ribonu 96.7 0.0078 2.7E-07 50.6 9.2 44 312-355 71-116 (127)
74 3r27_A HnRNP L, heterogeneous 96.7 0.012 4E-07 47.1 9.8 38 185-228 17-54 (100)
75 1x4e_A RNA binding motif, sing 96.7 0.0046 1.6E-07 47.6 7.2 37 187-229 3-39 (85)
76 1iqt_A AUF1, heterogeneous nuc 96.7 0.0038 1.3E-07 46.8 6.5 32 191-228 1-32 (75)
77 2mss_A Protein (musashi1); RNA 96.7 0.0054 1.9E-07 45.9 7.4 32 191-228 1-32 (75)
78 2dgt_A RNA-binding protein 30; 96.7 0.016 5.5E-07 45.3 10.5 36 186-227 7-42 (92)
79 1x4g_A Nucleolysin TIAR; struc 96.7 0.014 4.7E-07 47.3 10.4 37 186-228 22-58 (109)
80 2ek1_A RNA-binding protein 12; 96.7 0.0028 9.7E-08 50.0 6.0 33 187-225 13-45 (95)
81 2do0_A HnRNP M, heterogeneous 96.7 0.0066 2.3E-07 49.6 8.4 38 186-229 12-49 (114)
82 2e44_A Insulin-like growth fac 96.7 0.019 6.5E-07 45.2 10.9 33 187-225 13-45 (96)
83 1x4c_A Splicing factor, argini 96.6 0.0091 3.1E-07 48.4 9.1 35 187-227 13-47 (108)
84 3md3_A Nuclear and cytoplasmic 96.6 0.0095 3.2E-07 51.8 9.9 33 190-228 1-33 (166)
85 2jvr_A Nucleolar protein 3; RN 96.6 0.011 3.6E-07 48.5 9.4 35 187-226 26-60 (111)
86 2dnl_A Cytoplasmic polyadenyla 96.6 0.0048 1.6E-07 50.7 7.4 31 187-223 6-36 (114)
87 2dis_A Unnamed protein product 96.6 0.013 4.6E-07 47.3 10.0 37 187-228 6-42 (109)
88 4f02_A Polyadenylate-binding p 96.6 0.0096 3.3E-07 54.7 10.2 102 187-370 13-124 (213)
89 3nmr_A Cugbp ELAV-like family 96.6 0.0079 2.7E-07 52.9 9.2 103 188-370 2-116 (175)
90 1u6f_A Tcubp1, RNA-binding pro 96.6 0.0092 3.2E-07 50.7 9.3 37 187-229 40-76 (139)
91 1wex_A Hypothetical protein (r 96.6 0.019 6.6E-07 46.2 10.5 37 186-228 12-48 (104)
92 2dnq_A RNA-binding protein 4B; 96.6 0.018 6.2E-07 44.7 10.2 36 186-227 5-40 (90)
93 1x4a_A Splicing factor, argini 96.6 0.017 5.6E-07 46.8 10.1 35 187-227 20-54 (109)
94 2rs2_A Musashi-1, RNA-binding 96.5 0.0097 3.3E-07 48.4 8.6 38 187-230 23-60 (109)
95 2hgl_A HNRPF protein, heteroge 96.5 0.0025 8.6E-08 54.3 5.1 39 187-229 42-81 (136)
96 2j76_E EIF-4B, EIF4B, eukaryot 96.5 0.0042 1.4E-07 49.7 6.2 38 186-230 16-53 (100)
97 1whx_A Hypothetical protein ri 96.5 0.0087 3E-07 48.9 8.1 35 187-227 8-42 (111)
98 2kn4_A Immunoglobulin G-bindin 96.5 0.012 4.1E-07 51.2 9.5 37 187-229 68-104 (158)
99 1why_A Hypothetical protein ri 96.5 0.02 6.7E-07 45.2 9.9 35 186-226 14-48 (97)
100 2lea_A Serine/arginine-rich sp 96.5 0.0079 2.7E-07 51.1 8.0 36 187-228 45-80 (135)
101 1wf1_A RNA-binding protein RAL 96.5 0.014 4.9E-07 47.3 9.3 36 314-349 63-100 (110)
102 1x5o_A RNA binding motif, sing 96.5 0.01 3.5E-07 48.5 8.5 37 187-229 23-59 (114)
103 2db1_A Heterogeneous nuclear r 96.5 0.002 6.9E-08 53.4 4.1 39 187-229 15-54 (118)
104 2qfj_A FBP-interacting repress 96.5 0.018 6.3E-07 52.5 11.1 36 188-229 27-62 (216)
105 3n9u_C Cleavage and polyadenyl 96.5 0.011 3.8E-07 51.5 9.1 79 188-346 54-134 (156)
106 2dh8_A DAZ-associated protein 96.4 0.0052 1.8E-07 49.5 6.4 39 186-230 13-51 (105)
107 2dgu_A Heterogeneous nuclear r 96.4 0.025 8.6E-07 45.2 10.3 34 187-226 9-42 (103)
108 1x4b_A Heterogeneous nuclear r 96.4 0.012 4E-07 48.3 8.5 37 188-230 26-62 (116)
109 2jwn_A Embryonic polyadenylate 96.4 0.011 3.9E-07 49.0 8.5 37 188-230 35-71 (124)
110 1wg5_A Heterogeneous nuclear r 96.4 0.0096 3.3E-07 47.9 7.5 36 187-228 13-49 (104)
111 1x4f_A Matrin 3; structural ge 96.4 0.013 4.3E-07 48.0 8.1 80 187-354 23-107 (112)
112 2e5j_A Methenyltetrahydrofolat 96.4 0.031 1.1E-06 44.1 10.4 38 312-349 55-94 (97)
113 1wg1_A KIAA1579 protein, homol 96.4 0.0089 3E-07 46.4 7.0 37 314-350 41-79 (88)
114 2hvz_A Splicing factor, argini 96.3 0.03 1E-06 44.5 10.2 35 190-230 1-35 (101)
115 2cq4_A RNA binding motif prote 96.3 0.0088 3E-07 48.9 6.9 36 188-229 24-59 (114)
116 2cjk_A Nuclear polyadenylated 96.3 0.0067 2.3E-07 53.0 6.6 100 189-370 3-108 (167)
117 2krb_A Eukaryotic translation 96.3 0.011 3.8E-07 45.0 7.0 36 189-226 1-38 (81)
118 2cpy_A RNA-binding protein 12; 96.2 0.0074 2.5E-07 49.5 6.2 37 186-228 12-49 (114)
119 2dnn_A RNA-binding protein 12; 96.2 0.0097 3.3E-07 48.5 6.8 35 188-229 15-49 (109)
120 1l3k_A Heterogeneous nuclear r 96.2 0.022 7.6E-07 51.0 10.0 39 186-230 10-48 (196)
121 3beg_B Splicing factor, argini 96.2 0.016 5.3E-07 47.6 8.1 34 187-226 14-47 (115)
122 2cpi_A CCR4-NOT transcription 96.2 0.0079 2.7E-07 49.1 6.2 82 187-347 13-99 (111)
123 2la4_A Nuclear and cytoplasmic 96.2 0.023 7.8E-07 45.2 8.8 35 187-227 25-59 (101)
124 2fc8_A NCL protein; structure 96.2 0.016 5.6E-07 46.1 7.9 38 312-349 53-92 (102)
125 2lmi_A GRSF-1, G-rich sequence 96.2 0.014 4.7E-07 47.2 7.4 39 186-228 8-47 (107)
126 1rk8_A CG8781-PA, CG8781-PA pr 96.2 0.022 7.6E-07 50.0 9.3 39 186-230 69-107 (165)
127 2cpx_A Hypothetical protein FL 96.1 0.018 6.2E-07 47.0 8.1 37 311-347 65-103 (115)
128 1nu4_A U1A RNA binding domain; 96.1 0.024 8.1E-07 44.7 8.4 39 314-352 52-92 (97)
129 3sde_A Paraspeckle component 1 96.0 0.038 1.3E-06 52.4 11.1 97 187-371 20-118 (261)
130 2nlw_A Eukaryotic translation 96.0 0.023 7.8E-07 45.7 8.1 38 312-349 60-100 (105)
131 2jvo_A Nucleolar protein 3; nu 96.0 0.038 1.3E-06 44.7 9.4 35 186-226 28-62 (108)
132 1fj7_A Nucleolin RBD1, protein 96.0 0.017 5.9E-07 45.9 7.3 36 311-347 56-93 (101)
133 1wez_A HnRNP H', FTP-3, hetero 96.0 0.0089 3.1E-07 48.0 5.5 36 187-229 13-48 (102)
134 1x4d_A Matrin 3; structural ge 96.0 0.02 6.9E-07 46.0 7.6 36 187-228 13-49 (102)
135 2kvi_A Nuclear polyadenylated 96.0 0.028 9.7E-07 44.3 8.4 36 186-227 7-43 (96)
136 2i2y_A Fusion protein consists 96.0 0.042 1.4E-06 47.2 10.1 77 186-349 70-148 (150)
137 2m2b_A RNA-binding protein 10; 96.0 0.021 7.1E-07 48.1 7.8 38 187-230 21-60 (131)
138 2pe8_A Splicing factor 45; RRM 95.9 0.035 1.2E-06 44.8 8.5 84 187-348 6-93 (105)
139 3nmr_A Cugbp ELAV-like family 95.9 0.031 1.1E-06 48.9 9.0 37 187-229 93-129 (175)
140 2xnq_A Nuclear polyadenylated 95.8 0.071 2.4E-06 42.1 10.1 35 186-226 19-54 (97)
141 2qfj_A FBP-interacting repress 95.8 0.031 1E-06 51.0 9.1 38 187-230 123-160 (216)
142 1b7f_A Protein (SXL-lethal pro 95.8 0.031 1E-06 48.6 8.7 38 187-230 87-124 (168)
143 3md3_A Nuclear and cytoplasmic 95.8 0.03 1E-06 48.4 8.5 39 186-230 84-122 (166)
144 2wbr_A GW182, gawky, LD47780P; 95.8 0.069 2.4E-06 41.4 9.2 72 187-346 5-78 (89)
145 2cjk_A Nuclear polyadenylated 95.7 0.039 1.3E-06 47.9 9.0 36 188-229 86-121 (167)
146 2fc9_A NCL protein; structure 95.7 0.03 1E-06 44.5 7.5 36 312-347 52-89 (101)
147 2hgn_A Heterogeneous nuclear r 95.7 0.012 4E-07 50.3 5.2 35 187-228 44-78 (139)
148 3smz_A Protein raver-1, ribonu 95.7 0.048 1.6E-06 52.2 10.2 59 313-371 57-117 (284)
149 1fxl_A Paraneoplastic encephal 95.7 0.046 1.6E-06 47.3 9.2 37 187-229 86-122 (167)
150 2adc_A Polypyrimidine tract-bi 95.6 0.093 3.2E-06 48.5 11.6 37 186-228 31-68 (229)
151 3q2s_C Cleavage and polyadenyl 95.6 0.023 7.8E-07 52.9 7.1 80 188-347 67-148 (229)
152 2hgm_A HNRPF protein, heteroge 95.6 0.016 5.6E-07 48.5 5.4 27 187-217 40-66 (126)
153 1wel_A RNA-binding protein 12; 95.5 0.014 4.9E-07 48.5 5.0 32 187-224 23-54 (124)
154 1sjr_A Polypyrimidine tract-bi 95.5 0.11 3.8E-06 45.4 10.6 35 313-347 84-122 (164)
155 2cqh_A IGF-II mRNA-binding pro 95.4 0.065 2.2E-06 41.7 8.3 36 313-348 44-82 (93)
156 2g4b_A Splicing factor U2AF 65 95.3 0.038 1.3E-06 48.3 7.4 38 187-230 92-129 (172)
157 1qm9_A Polypyrimidine tract-bi 95.3 0.091 3.1E-06 47.1 10.0 35 188-228 2-37 (198)
158 2voo_A Lupus LA protein; RNA-b 95.2 0.027 9.4E-07 50.9 6.3 36 189-230 109-144 (193)
159 3tyt_A Heterogeneous nuclear r 95.2 0.1 3.5E-06 47.5 10.2 36 187-228 2-38 (205)
160 2e5g_A U6 snRNA-specific termi 95.1 0.077 2.6E-06 41.5 7.9 33 187-225 6-38 (94)
161 3pgw_S U1-70K; protein-RNA com 95.1 0.077 2.6E-06 54.4 9.7 85 188-354 101-187 (437)
162 2ghp_A U4/U6 snRNA-associated 94.9 0.11 3.7E-06 49.9 9.9 100 187-372 39-140 (292)
163 4f02_A Polyadenylate-binding p 94.9 0.07 2.4E-06 48.8 8.1 36 188-229 102-137 (213)
164 1l3k_A Heterogeneous nuclear r 94.8 0.067 2.3E-06 47.8 7.6 38 187-230 102-139 (196)
165 2diu_A KIAA0430 protein; struc 94.7 0.045 1.6E-06 43.0 5.2 41 314-354 47-89 (96)
166 2yh0_A Splicing factor U2AF 65 94.7 0.084 2.9E-06 47.2 8.1 78 187-346 112-191 (198)
167 3egn_A RNA-binding protein 40; 94.7 0.028 9.5E-07 48.0 4.4 36 311-346 90-127 (143)
168 1fje_B Nucleolin RBD12, protei 94.6 0.01 3.5E-07 52.4 1.6 37 311-347 134-172 (175)
169 3smz_A Protein raver-1, ribonu 94.6 0.078 2.7E-06 50.7 8.0 82 187-350 182-265 (284)
170 2g4b_A Splicing factor U2AF 65 94.1 0.46 1.6E-05 41.1 11.4 57 313-370 51-115 (172)
171 3u1l_A PRE-mRNA-splicing facto 93.6 0.21 7.3E-06 46.5 8.4 40 187-228 132-176 (240)
172 3tyt_A Heterogeneous nuclear r 93.6 0.23 7.8E-06 45.1 8.6 36 187-228 121-158 (205)
173 3pgw_A U1-A; protein-RNA compl 93.6 0.33 1.1E-05 46.1 10.2 36 187-228 7-46 (282)
174 2cq2_A Hypothetical protein LO 93.6 0.34 1.2E-05 39.5 8.7 34 187-226 23-58 (114)
175 3sde_A Paraspeckle component 1 93.6 0.2 6.7E-06 47.4 8.4 37 188-230 95-131 (261)
176 1jmt_A Splicing factor U2AF 35 93.6 0.21 7.3E-06 40.0 7.3 58 290-347 33-104 (104)
177 2yh0_A Splicing factor U2AF 65 93.2 0.53 1.8E-05 41.8 10.3 26 188-217 3-28 (198)
178 2dit_A HIV TAT specific factor 93.0 0.4 1.4E-05 38.7 8.3 65 292-356 35-109 (112)
179 1sjq_A Polypyrimidine tract-bi 92.9 0.16 5.5E-06 40.8 5.6 39 186-230 13-51 (105)
180 2e5i_A Heterogeneous nuclear r 92.8 0.75 2.6E-05 38.0 9.8 37 314-350 62-103 (124)
181 1qm9_A Polypyrimidine tract-bi 92.8 0.49 1.7E-05 42.2 9.5 35 187-227 118-153 (198)
182 2cpd_A Apobec-1 stimulating pr 92.6 0.2 6.8E-06 39.4 5.8 42 186-231 12-53 (99)
183 2ghp_A U4/U6 snRNA-associated 92.6 0.44 1.5E-05 45.5 9.4 36 187-228 115-151 (292)
184 3d2w_A TAR DNA-binding protein 92.5 0.1 3.5E-06 40.4 3.9 38 186-229 8-45 (89)
185 3zzy_A Polypyrimidine tract-bi 92.3 0.43 1.5E-05 39.9 7.7 35 315-349 68-106 (130)
186 2ytc_A PRE-mRNA-splicing facto 92.0 0.24 8.1E-06 37.6 5.4 38 186-229 9-46 (85)
187 1wf0_A TDP-43, TAR DNA-binding 92.0 0.13 4.6E-06 39.4 4.0 38 187-230 3-40 (88)
188 2adc_A Polypyrimidine tract-bi 91.6 0.86 3E-05 41.8 9.8 36 187-228 149-185 (229)
189 2ad9_A Polypyrimidine tract-bi 91.4 0.23 7.8E-06 40.9 4.9 39 186-230 28-66 (119)
190 3s6e_A RNA-binding protein 39; 91.0 0.35 1.2E-05 39.4 5.6 56 292-347 26-91 (114)
191 2xs2_A Deleted in azoospermia- 90.9 0.22 7.7E-06 39.3 4.3 39 186-230 6-44 (102)
192 2cq1_A PTB-like protein L; RRM 90.3 0.24 8.3E-06 39.4 3.9 39 186-230 12-50 (101)
193 3v4m_A Splicing factor U2AF 65 89.8 0.78 2.7E-05 36.6 6.7 55 293-347 25-95 (105)
194 2d9o_A DNAJ (HSP40) homolog, s 89.0 0.64 2.2E-05 36.9 5.5 37 311-347 52-88 (100)
195 2hzc_A Splicing factor U2AF 65 85.3 1.4 4.8E-05 33.2 5.4 40 187-230 4-52 (87)
196 1x5p_A Negative elongation fac 83.6 1.4 4.8E-05 34.2 4.8 38 311-348 47-86 (97)
197 1fjc_A Nucleolin RBD2, protein 83.5 1.2 4E-05 34.5 4.3 37 312-348 52-90 (96)
198 3ue2_A Poly(U)-binding-splicin 81.1 1.5 5.1E-05 35.8 4.2 35 314-348 72-108 (118)
199 2cpd_A Apobec-1 stimulating pr 80.3 2.1 7.1E-05 33.3 4.7 35 312-346 50-86 (99)
200 2diu_A KIAA0430 protein; struc 79.9 1.2 4.1E-05 34.8 3.0 38 187-225 7-44 (96)
201 2j8a_A Histone-lysine N-methyl 78.8 2.5 8.6E-05 35.2 4.8 37 190-232 3-43 (136)
202 2bz2_A Negative elongation fac 78.5 3.2 0.00011 33.8 5.5 38 311-348 71-110 (121)
203 2ytc_A PRE-mRNA-splicing facto 76.9 2.3 7.7E-05 31.8 3.8 22 312-333 47-68 (85)
204 1wf0_A TDP-43, TAR DNA-binding 76.7 1.2 4E-05 33.9 2.1 38 312-349 41-78 (88)
205 2dhx_A Poly (ADP-ribose) polym 76.7 2.8 9.6E-05 33.1 4.3 37 187-227 6-45 (104)
206 2cq1_A PTB-like protein L; RRM 75.5 2.9 9.9E-05 33.0 4.2 35 313-347 51-89 (101)
207 2lcw_A RNA-binding protein FUS 76.8 0.61 2.1E-05 37.7 0.0 32 187-224 5-36 (116)
208 3d2w_A TAR DNA-binding protein 72.8 2.3 7.9E-05 32.5 3.0 36 312-347 47-82 (89)
209 3pgw_A U1-A; protein-RNA compl 72.4 3.7 0.00013 38.6 4.9 36 187-228 205-240 (282)
210 2ad9_A Polypyrimidine tract-bi 70.9 3.7 0.00013 33.5 3.9 35 313-347 67-105 (119)
211 1fje_B Nucleolin RBD12, protei 70.4 6.1 0.00021 33.9 5.6 60 311-371 52-121 (175)
212 3ue2_A Poly(U)-binding-splicin 65.4 4.2 0.00014 33.1 3.1 43 187-232 18-62 (118)
213 2hzc_A Splicing factor U2AF 65 64.8 4.3 0.00015 30.3 2.9 23 312-335 52-74 (87)
214 1sjq_A Polypyrimidine tract-bi 63.8 5.2 0.00018 31.8 3.3 35 313-347 52-90 (105)
215 1fjc_A Nucleolin RBD2, protein 60.8 5.1 0.00017 30.6 2.8 28 186-217 13-40 (96)
216 2lcw_A RNA-binding protein FUS 63.4 2 6.8E-05 34.5 0.0 36 311-346 55-92 (116)
217 3v4m_A Splicing factor U2AF 65 53.2 11 0.00039 29.6 3.7 44 187-232 3-52 (105)
218 1l8d_A DNA double-strand break 51.9 72 0.0024 25.1 8.4 31 275-305 49-85 (112)
219 2dnr_A Synaptojanin-1; RRM dom 50.3 11 0.00039 29.0 3.0 32 314-346 50-83 (91)
220 2kn4_A Immunoglobulin G-bindin 46.7 28 0.00097 29.1 5.5 61 311-371 11-92 (158)
221 1wey_A Calcipressin 1; structu 46.6 28 0.00096 27.4 4.8 45 189-233 5-57 (104)
222 1owx_A Lupus LA protein, SS-B, 42.8 15 0.00052 29.9 2.9 42 186-232 15-56 (121)
223 3he5_A Synzip1; heterodimeric 42.5 11 0.00037 23.8 1.4 21 282-302 29-49 (49)
224 3dxb_A Thioredoxin N-terminall 42.1 22 0.00074 31.9 4.2 37 312-348 174-212 (222)
225 3s6e_A RNA-binding protein 39; 41.2 24 0.00081 28.3 3.8 43 187-231 5-53 (114)
226 1x5p_A Negative elongation fac 41.2 36 0.0012 25.8 4.8 34 187-228 13-46 (97)
227 2xs2_A Deleted in azoospermia- 40.5 5.5 0.00019 30.9 -0.2 20 312-331 49-68 (102)
228 3tht_A Alkylated DNA repair pr 37.2 22 0.00075 34.7 3.5 22 314-335 57-78 (345)
229 2dhx_A Poly (ADP-ribose) polym 36.4 40 0.0014 26.5 4.2 33 314-346 48-81 (104)
230 1go4_E MAD1 (mitotic arrest de 36.3 1.3E+02 0.0045 23.4 7.1 71 232-307 19-91 (100)
231 2dnr_A Synaptojanin-1; RRM dom 34.1 37 0.0013 26.1 3.6 44 186-231 4-51 (91)
232 1ufw_A Synaptojanin 2; RNP dom 32.4 26 0.00088 27.2 2.5 22 314-336 59-80 (95)
233 2lf0_A Uncharacterized protein 29.7 1.1E+02 0.0036 24.5 5.6 24 283-306 35-58 (123)
234 1ufw_A Synaptojanin 2; RNP dom 29.1 42 0.0014 26.0 3.2 45 185-231 11-60 (95)
235 2l9w_A U4/U6 snRNA-associated- 27.9 1.9E+02 0.0063 23.1 6.7 50 180-233 12-64 (117)
236 2dit_A HIV TAT specific factor 27.6 71 0.0024 24.9 4.6 39 187-227 13-58 (112)
237 1whv_A Poly(A)-specific ribonu 26.3 73 0.0025 24.8 4.0 22 313-334 49-70 (100)
238 2bz2_A Negative elongation fac 25.5 62 0.0021 25.8 3.9 34 187-228 37-70 (121)
239 3nmd_A CGMP dependent protein 24.6 2E+02 0.0069 20.8 6.3 24 286-309 42-65 (72)
240 1z0k_B FYVE-finger-containing 24.6 1.7E+02 0.0058 21.1 5.4 24 281-304 43-66 (69)
241 2knc_B Integrin beta-3; transm 22.9 1.3E+02 0.0045 22.2 4.8 30 151-180 17-55 (79)
242 2ldf_A Sarafotoxin-M, SRTX-M; 20.7 27 0.00094 19.6 0.5 6 351-356 18-23 (26)
243 3twe_A Alpha4H; unknown functi 20.3 1E+02 0.0036 16.9 2.7 15 236-250 5-19 (27)
244 1edn_A Endothelin-1; signal po 20.1 26 0.00088 19.8 0.3 8 350-357 17-24 (26)
No 1
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.54 E-value=0.00074 Score=53.44 Aligned_cols=82 Identities=12% Similarity=0.146 Sum_probs=61.6
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~ 266 (515)
+..+||.|.|||.+++ +++|+++|+++ |.|.++.+.+|..
T Consensus 3 ~~~~~l~v~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~~~~---------------------------------- 42 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNIT----EDMLRGIFEPF--GKIDNIVLMKDSD---------------------------------- 42 (95)
T ss_dssp SCCCEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEEECCSS----------------------------------
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCEeEEEEeecCC----------------------------------
Confidence 5678999999999887 78899999986 5677776653311
Q ss_pred CCCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC--CCceeee
Q 010216 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVS 344 (515)
Q Consensus 267 ~rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~ 344 (515)
..+..+.|||+|++..+|..|.+.++... ...++|+
T Consensus 43 ------------------------------------------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 80 (95)
T 2dnz_A 43 ------------------------------------------TGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVG 80 (95)
T ss_dssp ------------------------------------------SCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred ------------------------------------------CCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 01346899999999999999999776543 3457777
Q ss_pred eCCCCC
Q 010216 345 DAPESR 350 (515)
Q Consensus 345 ~AP~P~ 350 (515)
.|.++.
T Consensus 81 ~a~~~~ 86 (95)
T 2dnz_A 81 HVTERL 86 (95)
T ss_dssp ESSCCC
T ss_pred Eccccc
Confidence 775544
No 2
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=97.54 E-value=0.00029 Score=55.68 Aligned_cols=35 Identities=11% Similarity=0.159 Sum_probs=27.7
Q ss_pred cceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 010216 189 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 228 (515)
+.+|.|+|||.+.+ +++|+++|+++. ..|.++.++
T Consensus 1 S~~i~v~nLp~~~t----e~~l~~~F~~~G-~~v~~v~i~ 35 (91)
T 2lxi_A 1 SNIVMLRMLPQAAT----EDDIRGQLQSHG-VQAREVRLM 35 (91)
T ss_dssp CCEEEEETCCSSCC----HHHHHHHHHHHT-CCCSBCCSS
T ss_pred CCEEEEeCCCCCCC----HHHHHHHHHHhC-CEeEEEEEE
Confidence 46899999999987 799999999973 256666544
No 3
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=97.52 E-value=0.00037 Score=56.02 Aligned_cols=78 Identities=22% Similarity=0.262 Sum_probs=59.6
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~ 266 (515)
.+..+|.|.|||.+++ +++|+++|+++ |.|.++.+.+|..
T Consensus 17 ~~gt~lfV~nLp~~~t----e~~L~~~F~~~--G~I~~v~i~~d~~---------------------------------- 56 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMT----QDELRSLFSSI--GEVESAKLIRDKV---------------------------------- 56 (99)
T ss_dssp CCCSEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEEECSS----------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEeEeeecCC----------------------------------
Confidence 4467899999999987 79999999986 6788887765421
Q ss_pred CCCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC--CCceeee
Q 010216 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVS 344 (515)
Q Consensus 267 ~rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~ 344 (515)
..+..|.|||+|.+..+|..|.+.++... ...++|+
T Consensus 57 ------------------------------------------tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~ 94 (99)
T 4fxv_A 57 ------------------------------------------AGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVS 94 (99)
T ss_dssp ------------------------------------------SCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ------------------------------------------CCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 01234799999999999999998775442 3456777
Q ss_pred eC
Q 010216 345 DA 346 (515)
Q Consensus 345 ~A 346 (515)
.|
T Consensus 95 ~A 96 (99)
T 4fxv_A 95 YA 96 (99)
T ss_dssp EC
T ss_pred Ee
Confidence 76
No 4
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=97.49 E-value=0.00039 Score=55.41 Aligned_cols=40 Identities=3% Similarity=0.060 Sum_probs=31.8
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 229 (515)
.....||+|+|||.+.+ +++|+++|+++.+-.+.+|.+++
T Consensus 6 ~~~m~tlfV~nL~~~~t----ee~L~~~F~~~G~i~v~~v~i~~ 45 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTV----VDSIMTALSPYASLAVNNIRLIK 45 (95)
T ss_dssp SCCCCEEEEESCCTTCC----HHHHHHHSTTTCCCCGGGEECCC
T ss_pred CCccCEEEEeCCCCcCC----HHHHHHHHHhhCCccEEEEEEEe
Confidence 35678999999999987 79999999987544666776553
No 5
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=97.41 E-value=0.00051 Score=53.45 Aligned_cols=82 Identities=13% Similarity=0.063 Sum_probs=59.3
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~ 266 (515)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|...
T Consensus 2 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~~~i~~~~~~--------------------------------- 42 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVT----KDHIMEIFSTY--GKIKMIDMPVERMH--------------------------------- 42 (88)
T ss_dssp CCCCEEEEECCCTTCC----HHHHHHHHHTT--SCEEEEECCEETTE---------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEEeCCCC---------------------------------
Confidence 4578999999999987 78999999986 56776665432210
Q ss_pred CCCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC--CCceeee
Q 010216 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVS 344 (515)
Q Consensus 267 ~rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~ 344 (515)
..+..|.|||+|.+..+|..|.+.++... ...+.|+
T Consensus 43 ------------------------------------------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 80 (88)
T 4a8x_A 43 ------------------------------------------PHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITAT 80 (88)
T ss_dssp ------------------------------------------EEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ------------------------------------------CCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEE
Confidence 11246899999999999999999776542 3356676
Q ss_pred eCCCC
Q 010216 345 DAPES 349 (515)
Q Consensus 345 ~AP~P 349 (515)
.|-+|
T Consensus 81 ~a~~~ 85 (88)
T 4a8x_A 81 AVLAP 85 (88)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 65444
No 6
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=97.41 E-value=0.00058 Score=56.02 Aligned_cols=80 Identities=18% Similarity=0.148 Sum_probs=62.7
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~ 266 (515)
+..+||.|.|||.+++ +++|+++|+++ |.|.++.+.+|...
T Consensus 4 ~p~~~lfV~nL~~~~t----e~~L~~~F~~~--G~i~~v~i~~d~~t--------------------------------- 44 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVR----ETFLKDMCRKY--GEVEEVEILLHPRT--------------------------------- 44 (110)
T ss_dssp SCCCEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEEEECTTT---------------------------------
T ss_pred CCCcEEEEECCCCCCC----HHHHHHHHHhc--CCeeEEEEEECCCC---------------------------------
Confidence 5678999999999887 79999999986 68988888765310
Q ss_pred CCCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC--CCceeee
Q 010216 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVS 344 (515)
Q Consensus 267 ~rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~ 344 (515)
.+..|.|||+|++..+|..|.+.+.... ...++|+
T Consensus 45 -------------------------------------------g~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~ 81 (110)
T 3s8s_A 45 -------------------------------------------RKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQ 81 (110)
T ss_dssp -------------------------------------------CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred -------------------------------------------CceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 1345899999999999999999876543 3456787
Q ss_pred eCCC
Q 010216 345 DAPE 348 (515)
Q Consensus 345 ~AP~ 348 (515)
.|+.
T Consensus 82 ~a~~ 85 (110)
T 3s8s_A 82 LDIK 85 (110)
T ss_dssp ECST
T ss_pred ECCC
Confidence 7753
No 7
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.39 E-value=0.0017 Score=52.15 Aligned_cols=81 Identities=15% Similarity=0.189 Sum_probs=60.4
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 265 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~ 265 (515)
....+||.|.|||.+++ +++|+++|+++ |.|.++.+.+|..
T Consensus 9 ~~~~~~l~v~nLp~~~t----~~~l~~~f~~~--G~i~~v~i~~~~~--------------------------------- 49 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTN----EQSLEQVFSKY--GQISEVVVVKDRE--------------------------------- 49 (102)
T ss_dssp CCCCSEEEEESCCTTCC----HHHHHHHHHHH--SCCCEEEECCCSS---------------------------------
T ss_pred CCCCCEEEEECCCCCCC----HHHHHHHHHhc--CCeEEEEEEeCCC---------------------------------
Confidence 35689999999999987 78999999998 5687777653311
Q ss_pred CCCCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC--CCceee
Q 010216 266 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTV 343 (515)
Q Consensus 266 ~~rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v 343 (515)
.....+.|||+|.+..+|..|.+.++... ...++|
T Consensus 50 -------------------------------------------~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 50 -------------------------------------------TQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp -------------------------------------------SCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred -------------------------------------------CCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 01345799999999999999998776543 345666
Q ss_pred eeCCC
Q 010216 344 SDAPE 348 (515)
Q Consensus 344 ~~AP~ 348 (515)
+.|-.
T Consensus 87 ~~a~~ 91 (102)
T 1x5s_A 87 DQAGK 91 (102)
T ss_dssp EEEEC
T ss_pred EECCC
Confidence 66533
No 8
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=97.36 E-value=0.0005 Score=54.03 Aligned_cols=81 Identities=14% Similarity=0.097 Sum_probs=55.7
Q ss_pred ceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q 010216 190 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTRP 269 (515)
Q Consensus 190 ~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~~rp 269 (515)
+||.|.|||.+.+ +++|+++|+++.+..|.++.+.+|-.
T Consensus 2 ~~l~V~nL~~~~t----~~~l~~~F~~~G~~~v~~v~i~~~~~------------------------------------- 40 (90)
T 3p5t_L 2 IALYIGNLTWWTT----DEDLTEAVHSLGVNDILEIKFFENRA------------------------------------- 40 (90)
T ss_dssp --CEEESCCTTCC----HHHHHHHHHTTTCCCCCCEEEEECTT-------------------------------------
T ss_pred eEEEEeCCCCCCC----HHHHHHHHHHhCCCceEEEEEEecCC-------------------------------------
Confidence 6899999999887 79999999987433788887764421
Q ss_pred ccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC--CCceeeeeCC
Q 010216 270 TIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAP 347 (515)
Q Consensus 270 ~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~AP 347 (515)
..+..|.|||+|++..+|..|.+.+.... ...++|+.|.
T Consensus 41 ---------------------------------------~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 41 ---------------------------------------NGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp ---------------------------------------TCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred ---------------------------------------CCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 01235899999999999999998876643 3456677665
Q ss_pred CCC
Q 010216 348 ESR 350 (515)
Q Consensus 348 ~P~ 350 (515)
.|.
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 443
No 9
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=97.36 E-value=0.0023 Score=51.65 Aligned_cols=82 Identities=17% Similarity=0.291 Sum_probs=61.6
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 265 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~ 265 (515)
....++|.|.|||.+++ +++|+++|+++ |.|.++.+.+|..
T Consensus 10 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~--------------------------------- 50 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLD----EKDLKPLFEEF--GKIYELTVLKDRF--------------------------------- 50 (106)
T ss_dssp CTTCEEEEEESCCTTCC----HHHHHHHHHHH--SCCCEEECCCCSS---------------------------------
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEEecCC---------------------------------
Confidence 46689999999999987 78999999998 5687776553211
Q ss_pred CCCCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC-----CCc
Q 010216 266 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL-----VDT 340 (515)
Q Consensus 266 ~~rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~-----~~~ 340 (515)
..+..+.|||+|.+..+|..|.+.++... ...
T Consensus 51 -------------------------------------------~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 51 -------------------------------------------TGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp -------------------------------------------SCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred -------------------------------------------CCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 01345899999999999999999776543 346
Q ss_pred eeeeeCCCC
Q 010216 341 WTVSDAPES 349 (515)
Q Consensus 341 ~~v~~AP~P 349 (515)
+.|+.|-.+
T Consensus 88 l~v~~a~~~ 96 (106)
T 2dgp_A 88 IQVKPADSE 96 (106)
T ss_dssp CEEEECCCC
T ss_pred EEEEECCcc
Confidence 677776443
No 10
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.33 E-value=0.0015 Score=52.07 Aligned_cols=82 Identities=18% Similarity=0.156 Sum_probs=60.6
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~ 266 (515)
...+||.|.|||.+++ +++|+++|+++ |.|.++.+.+|..
T Consensus 6 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~---------------------------------- 45 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSS----EEDLEKLFSAY--GPLSELHYPIDSL---------------------------------- 45 (99)
T ss_dssp CSCEEEEEECCCTTCC----HHHHHHHHHTT--SCEEEEECCCCTT----------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEeEEEEEecCC----------------------------------
Confidence 5678999999999987 78999999987 5677766543220
Q ss_pred CCCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccC--CCCceeee
Q 010216 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 344 (515)
Q Consensus 267 ~rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~--~~~~~~v~ 344 (515)
..+..+.|||+|.+..+|..|.+.++.. ....+.|+
T Consensus 46 ------------------------------------------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 46 ------------------------------------------TKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp ------------------------------------------TCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred ------------------------------------------CCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 1134689999999999999999876643 23456777
Q ss_pred eCCCCC
Q 010216 345 DAPESR 350 (515)
Q Consensus 345 ~AP~P~ 350 (515)
.|-.+.
T Consensus 84 ~a~~~~ 89 (99)
T 1whw_A 84 PSTIKK 89 (99)
T ss_dssp ECCCCS
T ss_pred EcCCCc
Confidence 765444
No 11
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=97.33 E-value=0.001 Score=54.23 Aligned_cols=84 Identities=12% Similarity=0.161 Sum_probs=63.7
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 265 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~ 265 (515)
.+..++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 23 ~~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~~~~--------------------------------- 63 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNIT----EDMLRGIFEPF--GRIESIQLMMDSE--------------------------------- 63 (108)
T ss_dssp CSSCEEEEEECCCSSCC----HHHHHHHHTTT--SCEEEEEEEEETT---------------------------------
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEEcCC---------------------------------
Confidence 46789999999999876 78999999886 5787777664311
Q ss_pred CCCCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC--CCceee
Q 010216 266 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTV 343 (515)
Q Consensus 266 ~~rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v 343 (515)
...+.|.|||+|.+..+|..|.+.+.... ...++|
T Consensus 64 -------------------------------------------~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 64 -------------------------------------------TGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp -------------------------------------------TTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred -------------------------------------------CCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 01235799999999999999998776543 346778
Q ss_pred eeCCCCCc
Q 010216 344 SDAPESRE 351 (515)
Q Consensus 344 ~~AP~P~D 351 (515)
+.|-+..|
T Consensus 101 ~~a~~k~d 108 (108)
T 2jrs_A 101 GHVTERTD 108 (108)
T ss_dssp ECSCSSCC
T ss_pred EEcccCCC
Confidence 88866654
No 12
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.31 E-value=0.0014 Score=51.84 Aligned_cols=80 Identities=18% Similarity=0.209 Sum_probs=58.4
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceE-EEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRS-MVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 265 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v-~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~ 265 (515)
...+||.|.|||.+.+ +++|+++|+++ |.|.++ .+.+|..
T Consensus 3 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~~~~i~~~~~--------------------------------- 43 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEID----EKLLYDTFSAF--GVILQTPKIMRDPD--------------------------------- 43 (96)
T ss_dssp SCCCEEEEECCCTTCC----HHHHHHHHHTT--SCBSSCCEECCCTT---------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEEEEcCC---------------------------------
Confidence 4578999999999987 79999999986 556666 5443211
Q ss_pred CCCCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC--CCceee
Q 010216 266 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTV 343 (515)
Q Consensus 266 ~~rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v 343 (515)
..+..+.|||+|++..+|..|.+.++... ...+.|
T Consensus 44 -------------------------------------------~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 80 (96)
T 1x5t_A 44 -------------------------------------------TGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITV 80 (96)
T ss_dssp -------------------------------------------TCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEE
T ss_pred -------------------------------------------CCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 11346899999999999999999766542 345667
Q ss_pred eeCCC
Q 010216 344 SDAPE 348 (515)
Q Consensus 344 ~~AP~ 348 (515)
+.|-+
T Consensus 81 ~~a~~ 85 (96)
T 1x5t_A 81 SYAFK 85 (96)
T ss_dssp EESCC
T ss_pred EEecc
Confidence 76633
No 13
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=97.28 E-value=0.001 Score=51.32 Aligned_cols=36 Identities=8% Similarity=0.100 Sum_probs=30.2
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 228 (515)
...++|.|.|||.+.+ +++|+++|+++ |.|.++.+.
T Consensus 5 ~~~~~l~V~nl~~~~~----~~~l~~~f~~~--G~i~~v~i~ 40 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVD----DKVLHAAFIPF--GDITDIQIP 40 (85)
T ss_dssp CCSSEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEECC
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHhcc--CCEEEEEEE
Confidence 5689999999999886 79999999987 567777654
No 14
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=97.27 E-value=0.0015 Score=51.77 Aligned_cols=79 Identities=15% Similarity=0.151 Sum_probs=58.8
Q ss_pred cceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 010216 189 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTR 268 (515)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~~r 268 (515)
.++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 2 ~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~------------------------------------ 39 (96)
T 2x1f_A 2 SRVVYLGSIPYDQT----EEQILDLCSNV--GPVINLKMMFDPQ------------------------------------ 39 (96)
T ss_dssp CSEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEECCBCTT------------------------------------
T ss_pred CcEEEEECCCCCCC----HHHHHHHHHhc--CCEEEEEEEeCCC------------------------------------
Confidence 67999999999887 78999999987 5677776543211
Q ss_pred CccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccC--CCCceeeeeC
Q 010216 269 PTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDA 346 (515)
Q Consensus 269 p~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~--~~~~~~v~~A 346 (515)
..+..|.|||+|++..+|..|.+.+... ....+.|+.|
T Consensus 40 ----------------------------------------~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 40 ----------------------------------------TGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp ----------------------------------------TCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ----------------------------------------CCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 0134589999999999999999877654 2345677777
Q ss_pred CCC
Q 010216 347 PES 349 (515)
Q Consensus 347 P~P 349 (515)
-++
T Consensus 80 ~~~ 82 (96)
T 2x1f_A 80 SNS 82 (96)
T ss_dssp SCS
T ss_pred CCC
Confidence 443
No 15
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.26 E-value=0.0023 Score=51.59 Aligned_cols=82 Identities=17% Similarity=0.122 Sum_probs=60.9
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 265 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~ 265 (515)
....++|.|.|||.+++ +++|+++|+++ |.|.++.+.+|..
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~--------------------------------- 52 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVS----EPLLWELFLQA--GPVVNTHMPKDRV--------------------------------- 52 (105)
T ss_dssp CCTTTEEEEECCCTTCC----HHHHHHHHHTT--SCEEEEECCBCSS---------------------------------
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEecCC---------------------------------
Confidence 45689999999999987 78999999987 5677776543211
Q ss_pred CCCCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC--CCceee
Q 010216 266 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTV 343 (515)
Q Consensus 266 ~~rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v 343 (515)
..+..+.|||+|.+..+|..|.+.++... ...+.|
T Consensus 53 -------------------------------------------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 53 -------------------------------------------TGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp -------------------------------------------SCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred -------------------------------------------CCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 11345799999999999999999776543 345677
Q ss_pred eeCCCC
Q 010216 344 SDAPES 349 (515)
Q Consensus 344 ~~AP~P 349 (515)
+.|-.+
T Consensus 90 ~~a~~~ 95 (105)
T 1x5u_A 90 NKASAH 95 (105)
T ss_dssp EETTTT
T ss_pred EECCCC
Confidence 776443
No 16
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.26 E-value=0.0026 Score=50.70 Aligned_cols=38 Identities=13% Similarity=0.300 Sum_probs=31.5
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 229 (515)
....++|.|.|||.+++ +++|+++|+++ |.|.++.+.+
T Consensus 7 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 44 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCG----ETELREYFKKF--GVVTEVVMIY 44 (99)
T ss_dssp CSSCCEEEEESCCSSCC----HHHHHHHHSSS--SCEEEEEECC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 36689999999999987 78999999986 6787777654
No 17
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=97.24 E-value=0.0011 Score=51.40 Aligned_cols=38 Identities=21% Similarity=0.296 Sum_probs=30.3
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 4 ~~~~~l~v~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 41 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEIT----TAAIAAAFAPF--GRISDARVVKD 41 (87)
T ss_dssp --CEEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCceEEEEeCCCCCCC----HHHHHHHHHhc--CCEeEEEEEec
Confidence 5678999999999976 79999999987 56888776643
No 18
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=97.20 E-value=0.0017 Score=50.97 Aligned_cols=37 Identities=14% Similarity=0.133 Sum_probs=30.5
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 228 (515)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.+.
T Consensus 5 ~~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~v~~~~i~ 41 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFT----WKMLKDKFNEC--GHVLYADIK 41 (92)
T ss_dssp SSSCCEEEECSCCTTCC----HHHHHHHHHTT--SCEEEEEEE
T ss_pred CCCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEE
Confidence 35689999999999887 79999999986 567777655
No 19
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=97.19 E-value=0.0021 Score=52.82 Aligned_cols=38 Identities=13% Similarity=0.219 Sum_probs=31.6
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 229 (515)
.+..++|.|.|||.+++ +++|+++|+++ |.|.++.+.+
T Consensus 22 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 59 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFG----DQDLLQMFMPF--GNVVSAKVFI 59 (115)
T ss_dssp CSTTCCEEEESCCSSCC----HHHHHHHHGGG--SCCSEEEEEE
T ss_pred CCCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEE
Confidence 35678999999999987 79999999987 5688887664
No 20
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=97.17 E-value=0.0017 Score=49.77 Aligned_cols=76 Identities=24% Similarity=0.263 Sum_probs=57.4
Q ss_pred ceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q 010216 190 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTRP 269 (515)
Q Consensus 190 ~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~~rp 269 (515)
+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 2 ~~l~V~nlp~~~t----~~~l~~~f~~~--G~i~~~~i~~~~~------------------------------------- 38 (83)
T 3md1_A 2 FNLFVGDLNVNVD----DETLRNAFKDF--PSYLSGHVMWDMQ------------------------------------- 38 (83)
T ss_dssp EEEEEECCCTTCC----HHHHHHHHTTS--TTEEEEEEEECTT-------------------------------------
T ss_pred eEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEEEcCC-------------------------------------
Confidence 7999999999987 79999999886 6788877664421
Q ss_pred ccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC--CCceeeeeCC
Q 010216 270 TIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAP 347 (515)
Q Consensus 270 ~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~AP 347 (515)
..+..|.|||+|.+..+|..|.+.++... ...++++.|-
T Consensus 39 ---------------------------------------~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 39 ---------------------------------------TGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp ---------------------------------------TCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ---------------------------------------CCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 01235799999999999999999775442 3356677664
No 21
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=97.17 E-value=0.0022 Score=55.99 Aligned_cols=101 Identities=23% Similarity=0.266 Sum_probs=70.8
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 010216 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (515)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~~ 267 (515)
+.+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 1 s~~~l~v~nlp~~~~----~~~l~~~f~~~--G~i~~v~~~~~~~----------------------------------- 39 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMT----QEEFRSLFGSI--GEIESCKLVRDKI----------------------------------- 39 (167)
T ss_dssp CCSEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEEECTT-----------------------------------
T ss_pred CcceEEEcCCCCCCC----HHHHHHHHHhc--CCeEEEEEEeCCC-----------------------------------
Confidence 468999999999986 79999999986 5687777653221
Q ss_pred CCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC--CCceeeee
Q 010216 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSD 345 (515)
Q Consensus 268 rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~ 345 (515)
..++.|.|||+|.+..+|..|.+.++... ...+.+..
T Consensus 40 -----------------------------------------~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 78 (167)
T 1fxl_A 40 -----------------------------------------TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 78 (167)
T ss_dssp -----------------------------------------TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred -----------------------------------------CCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEe
Confidence 01245899999999999999998765432 23455665
Q ss_pred CCCC------CcccccccccchHHHHHHHHH
Q 010216 346 APES------RELIWNNLNIKFFQRQIRQYV 370 (515)
Q Consensus 346 AP~P------~DIiW~NL~~~~~~r~~R~~~ 370 (515)
|.++ ..+.=.||..+..+..++.++
T Consensus 79 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f 109 (167)
T 1fxl_A 79 ARPSSASIRDANLYVSGLPKTMTQKELEQLF 109 (167)
T ss_dssp CCCCCGGGTTCEEEEESCCTTCCHHHHHHHH
T ss_pred cCCCcccCCCCcEEECCCCCcCCHHHHHHHH
Confidence 5433 337777777766655555543
No 22
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.17 E-value=0.0019 Score=50.85 Aligned_cols=37 Identities=16% Similarity=0.270 Sum_probs=30.5
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 228 (515)
.+..++|.|.|||.+.+ +++|+++|+++ |.|.++.+.
T Consensus 13 ~~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~ 49 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLT----NNDLYRIFSKY--GKVVKVTIM 49 (94)
T ss_dssp CCCTTSEEEESCCTTSC----HHHHHHHTTTT--SCEEEEEEC
T ss_pred CCCCCEEEEECCCCCCC----HHHHHHHHHhc--CCeEEEEEE
Confidence 46789999999999887 78899999886 567777655
No 23
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=97.17 E-value=0.0033 Score=51.88 Aligned_cols=37 Identities=5% Similarity=0.138 Sum_probs=30.6
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 229 (515)
...+||.|.|||.+++ +++|+++|+++ |.|.++.+.+
T Consensus 5 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 41 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETN----EKMLKAVFGKH--GPISEVLLIK 41 (116)
T ss_dssp CSCCEEEEECCTTTCC----HHHHHHHHHTS--SCCSEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEE
Confidence 4578999999999886 79999999987 5688877663
No 24
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.16 E-value=0.0021 Score=51.38 Aligned_cols=81 Identities=21% Similarity=0.207 Sum_probs=60.5
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 265 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~ 265 (515)
....++|.|.|||.+++ +++|+++|+++ |.|.++.+.+|..
T Consensus 14 ~~~~~~l~v~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~--------------------------------- 54 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCT----KEELEEICKAH--GTVKDLRLVTNRA--------------------------------- 54 (100)
T ss_dssp CCCCSCEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEEEECTT---------------------------------
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCeEEEEEEECCC---------------------------------
Confidence 35678999999999987 78999999986 5687777654310
Q ss_pred CCCCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccC--CCCceee
Q 010216 266 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTV 343 (515)
Q Consensus 266 ~~rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~--~~~~~~v 343 (515)
.+..+.|||+|++..+|..|.+.++.. ....++|
T Consensus 55 --------------------------------------------g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 55 --------------------------------------------GKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp --------------------------------------------SCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred --------------------------------------------CCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 123479999999999999999876543 2345677
Q ss_pred eeCCCC
Q 010216 344 SDAPES 349 (515)
Q Consensus 344 ~~AP~P 349 (515)
+.|-++
T Consensus 91 ~~a~~~ 96 (100)
T 2do4_A 91 AISNSG 96 (100)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 776443
No 25
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=97.14 E-value=0.0017 Score=53.61 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=30.0
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 010216 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (515)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 229 (515)
+..+|.|.|||.+++ +++|+++|+++ |.|.++.+.+
T Consensus 4 ~~~~lfV~nLp~~~t----e~~L~~~F~~~--G~v~~v~i~~ 39 (115)
T 4f25_A 4 GSGNIFIKNLDKSID----NKALYDTFSAF--GNILSCKVVC 39 (115)
T ss_dssp -CCEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCEEEECCCCCCCC----HHHHHHHHhcc--CCEEEEEEee
Confidence 456899999999987 79999999987 6788887764
No 26
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.12 E-value=0.0036 Score=50.60 Aligned_cols=84 Identities=15% Similarity=0.209 Sum_probs=61.4
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 265 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~ 265 (515)
....++|.|.|||.+++ +++|+++|+++ |.|.++.+.+|..+
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~~-------------------------------- 53 (107)
T 2cph_A 12 KQTTSKILVRNIPFQAN----QREIRELFSTF--GELKTVRLPKKMTG-------------------------------- 53 (107)
T ss_dssp SSCCCCEEEESCCTTCC----HHHHHHHHHTT--SCEEEEECCCCCSS--------------------------------
T ss_pred CCCCCEEEEeCCCCcCC----HHHHHHHHHcc--CCeEEEEEecCCCC--------------------------------
Confidence 45689999999999987 78999999986 56777765533100
Q ss_pred CCCCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHh-ccC--CCCcee
Q 010216 266 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSL-HAQ--LVDTWT 342 (515)
Q Consensus 266 ~~rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~-~~~--~~~~~~ 342 (515)
.....+.|||+|.+..+|..|.+.+ +.. ....+.
T Consensus 54 -------------------------------------------~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 54 -------------------------------------------TGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp -------------------------------------------SCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred -------------------------------------------CCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 1235689999999999999999887 433 234567
Q ss_pred eeeCCCCC
Q 010216 343 VSDAPESR 350 (515)
Q Consensus 343 v~~AP~P~ 350 (515)
|+.|-...
T Consensus 91 v~~a~~~~ 98 (107)
T 2cph_A 91 LEWADSEV 98 (107)
T ss_dssp EEECCCCC
T ss_pred EEeCCCCC
Confidence 77764433
No 27
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.12 E-value=0.0051 Score=49.34 Aligned_cols=39 Identities=15% Similarity=0.127 Sum_probs=32.0
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
....++|.|.|||.+++ +++|+++|+++ |.|.++.+.+|
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 50 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVT----EVLILQLFSQI--GPCKSCKMITE 50 (103)
T ss_dssp SCCCCEEEEESCCTTCC----HHHHHHHHHHH--SCEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCC----HHHHHHHHHhc--CCEeEEEEEec
Confidence 35679999999999886 79999999998 57877776643
No 28
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.11 E-value=0.0052 Score=49.26 Aligned_cols=38 Identities=8% Similarity=0.159 Sum_probs=31.3
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 229 (515)
....++|.|.|||.+++ +++|+++|+++ |.|.++.+.+
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~ 49 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFR----DPDLRQMFGQF--GKILDVEIIF 49 (103)
T ss_dssp SCCCCEEEEESCCTTCC----HHHHHHHGGGT--SCEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 45679999999999987 78999999986 6787776653
No 29
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.11 E-value=0.0039 Score=49.58 Aligned_cols=39 Identities=10% Similarity=0.151 Sum_probs=31.9
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcc-eEEEecC
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFY-RSMVVTN 230 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~-~v~i~~d 230 (515)
....+||.|.|||.+++ +++|+++|+++ |.|. ++.+.+|
T Consensus 6 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~~v~i~~~ 45 (99)
T 2div_A 6 SGMAASLWMGDLEPYMD----ENFISRAFATM--GETVMSVKIIRN 45 (99)
T ss_dssp CSSSSEEEECSCCTTCC----HHHHHHHHHHT--TCCCCEEEEEEC
T ss_pred CCCccEEEEeCCCCCCC----HHHHHHHHHHh--CCcceEEEEeec
Confidence 45689999999999977 79999999987 5677 7776643
No 30
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.09 E-value=0.0023 Score=50.49 Aligned_cols=38 Identities=11% Similarity=0.063 Sum_probs=31.6
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 229 (515)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 12 ~~~~~~l~v~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~ 49 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTT----ERDLREVFSKY--GPIADVSIVY 49 (95)
T ss_dssp CCGGGCEEEESCCSSCC----HHHHHHHHHTT--SCEEEEEEEE
T ss_pred CCCCCEEEEECCCCCCC----HHHHHHHHHhc--CCeeEEEEEE
Confidence 46689999999999976 78999999986 5788877664
No 31
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=97.08 E-value=0.0034 Score=50.59 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=31.0
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 229 (515)
....+||.|.|||.+++ +++|+++|+++ |.|.++.+.+
T Consensus 12 ~~~~~~l~v~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 49 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQS----EEDVLRLFQPF--GVIDECTVLR 49 (105)
T ss_dssp CCCCCEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEE
Confidence 35689999999999987 78999999987 5677776653
No 32
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=97.05 E-value=0.004 Score=51.12 Aligned_cols=39 Identities=23% Similarity=0.355 Sum_probs=32.2
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
....+||.|.|||.+++ +++|+++|+++ |.|.++.+.+|
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 50 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEIT----TEDIKAAFAPF--GRISDARVVKD 50 (115)
T ss_dssp STTCEEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEEc
Confidence 35689999999999987 78999999987 56888877643
No 33
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.04 E-value=0.0027 Score=50.88 Aligned_cols=37 Identities=8% Similarity=0.092 Sum_probs=30.2
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 228 (515)
....++|.|.|||.+++ +++|+++|+++ |.|.++.+.
T Consensus 9 ~~~~~~l~V~nLp~~~t----~~~l~~~f~~~--G~i~~v~i~ 45 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVD----DKVLHAAFIPF--GDITDIQIP 45 (102)
T ss_dssp CCCCSCEEEESCCSSCC----HHHHHHHHTTT--SCCCCEECC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHhhcc--CCEEEEEEE
Confidence 35689999999999876 79999999986 567776654
No 34
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=97.03 E-value=0.0025 Score=49.56 Aligned_cols=37 Identities=11% Similarity=0.235 Sum_probs=30.8
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010216 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
..+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 5 ~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 41 (89)
T 3ucg_A 5 DARSIYVGNVDYGAT----AEELEAHFHGC--GSVNRVTILCD 41 (89)
T ss_dssp HHTEEEEESCCTTCC----HHHHHHHHGGG--CCEEEEEEEES
T ss_pred cCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEEec
Confidence 468999999999986 79999999987 67888877644
No 35
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=97.01 E-value=0.003 Score=55.33 Aligned_cols=101 Identities=22% Similarity=0.243 Sum_probs=70.9
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 010216 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (515)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~~ 267 (515)
+.+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 2 ~~~~l~v~nlp~~~~----~~~l~~~f~~~--G~i~~v~i~~~~~----------------------------------- 40 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMT----DRELYALFRAI--GPINTCRIMRDYK----------------------------------- 40 (168)
T ss_dssp CCSEEEEECCCTTCC----HHHHHHHHHTT--SCEEEEECCEETT-----------------------------------
T ss_pred CccEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEEEeCC-----------------------------------
Confidence 578999999999987 78899999986 5677776543211
Q ss_pred CCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC--CCceeeee
Q 010216 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSD 345 (515)
Q Consensus 268 rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~ 345 (515)
.....|.|||+|.+..+|..|.+.+.... ...+.++.
T Consensus 41 -----------------------------------------~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 79 (168)
T 1b7f_A 41 -----------------------------------------TGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSY 79 (168)
T ss_dssp -----------------------------------------TTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred -----------------------------------------CCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEe
Confidence 01245899999999999999998765432 23445554
Q ss_pred CC------CCCcccccccccchHHHHHHHHH
Q 010216 346 AP------ESRELIWNNLNIKFFQRQIRQYV 370 (515)
Q Consensus 346 AP------~P~DIiW~NL~~~~~~r~~R~~~ 370 (515)
|. .+.-|.-.||..+..+..++.++
T Consensus 80 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f 110 (168)
T 1b7f_A 80 ARPGGESIKDTNLYVTNLPRTITDDQLDTIF 110 (168)
T ss_dssp CCCCSSTTTTCEEEEESCCTTCCHHHHHHHH
T ss_pred cCCCcccCCCCCEEEeCCCCCCCHHHHHHhh
Confidence 43 33457788888776666665543
No 36
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.01 E-value=0.0047 Score=50.22 Aligned_cols=37 Identities=16% Similarity=0.199 Sum_probs=30.4
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 229 (515)
...+||.|.|||.+++ +++|+++|+++ |.|.++.+.+
T Consensus 13 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 49 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSE----EEALGEVLQQF--GDLKYVRVVL 49 (111)
T ss_dssp CCCCCEEEESCCTTCC----HHHHHHHHHTT--SCEEEEECCB
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 5678999999999987 79999999986 5677776553
No 37
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.00 E-value=0.0033 Score=50.51 Aligned_cols=37 Identities=8% Similarity=0.062 Sum_probs=30.2
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 228 (515)
....+||.|.|||.+++ +++|+++|+++ |.|.++.+.
T Consensus 10 ~~~~~~l~V~nLp~~~t----~~~l~~~f~~~--G~i~~v~i~ 46 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTS----PDSLRRVFEKY--GRVGDVYIP 46 (103)
T ss_dssp CSCCCEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEECC
T ss_pred CCCCeEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEE
Confidence 35679999999999987 79999999986 567777654
No 38
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=97.00 E-value=0.0025 Score=50.31 Aligned_cols=38 Identities=13% Similarity=0.182 Sum_probs=31.7
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 229 (515)
....+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 13 ~~~~~~l~v~nlp~~~~----~~~l~~~F~~~--G~i~~v~i~~ 50 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVR----EEILYELFLQA--GPLTKVTICK 50 (95)
T ss_dssp TTGGGEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCCEEEEECCCCCCC----HHHHHHHHHhc--CCEEEEEEEE
Confidence 36789999999999887 78999999987 5787777664
No 39
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.00 E-value=0.0026 Score=51.13 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=31.4
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
...+||.|.|||.+++ +++|+++|+++ |.|.++.+.+|
T Consensus 13 ~~~~~l~v~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 50 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTT----EQDLKEYFSTF--GEVLMVQVKKD 50 (103)
T ss_dssp CCCCCEEEESCCSSCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCEEEEEcCCCcCC----HHHHHHHHHhc--CCeEEEEEEec
Confidence 5678999999999887 78999999987 56888776643
No 40
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.00 E-value=0.0039 Score=51.27 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=30.8
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 228 (515)
....+||.|.|||.+++ +++|+++|+++ |.|.++.+.
T Consensus 14 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~ 50 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTT----DASLRKYFEGF--GDIEEAVVI 50 (116)
T ss_dssp SCSSSEEEEECCCSSCC----HHHHHHHHHTT--SCEEEEEES
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCeeEEEEE
Confidence 35679999999999887 78999999986 567777665
No 41
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=96.99 E-value=0.0042 Score=50.11 Aligned_cols=39 Identities=8% Similarity=0.170 Sum_probs=31.9
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
....+||.|.|||.+++ +++|+++|+++ |.|.++.+.+|
T Consensus 20 ~~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~i~~v~i~~~ 58 (106)
T 1p27_B 20 SVEGWILFVTGVHEEAT----EEDIHDKFAEY--GEIKNIHLNLD 58 (106)
T ss_dssp BTTBEEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHhcc--CCeEEEEEEec
Confidence 35578999999999887 78999999987 67888876643
No 42
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.97 E-value=0.0035 Score=50.43 Aligned_cols=37 Identities=11% Similarity=0.373 Sum_probs=30.4
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 229 (515)
....+||.|.|||.+++ +++|+++|+++ | |.++.+.+
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G-i~~v~i~~ 48 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVT----EESIKEFFRGL--N-ISAVRLPR 48 (104)
T ss_dssp SSSCEEEEEESCCSSCC----HHHHHHHTTTS--C-EEEEECCB
T ss_pred CCCCCEEEEeCCCCcCC----HHHHHHHHHHC--C-ceEEEEec
Confidence 45679999999999987 79999999986 5 87776653
No 43
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.97 E-value=0.0023 Score=51.43 Aligned_cols=82 Identities=18% Similarity=0.250 Sum_probs=60.9
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~ 266 (515)
...+||.|.|||.+++ +++|+++|+++ |.|.++.+.+|..
T Consensus 6 ~~~~~l~V~nlp~~~~----~~~l~~~f~~~--G~i~~~~i~~~~~---------------------------------- 45 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEAT----EEQLKDIFSEV--GPVVSFRLVYDRE---------------------------------- 45 (104)
T ss_dssp HHHSCEEEESCCTTSC----HHHHHHHHHTT--SCCSEEEEEEETT----------------------------------
T ss_pred CCccEEEEeCCCCcCC----HHHHHHHHHhc--CCeeEEEEEeCCC----------------------------------
Confidence 3568999999999887 78999999986 5787777664321
Q ss_pred CCCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC--CCceeee
Q 010216 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVS 344 (515)
Q Consensus 267 ~rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~ 344 (515)
.....|.|||+|.+..+|..|.+.++... ...++|+
T Consensus 46 ------------------------------------------~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 46 ------------------------------------------TGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 83 (104)
T ss_dssp ------------------------------------------TTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEE
T ss_pred ------------------------------------------CCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 01234799999999999999998776543 3456777
Q ss_pred eCCCCC
Q 010216 345 DAPESR 350 (515)
Q Consensus 345 ~AP~P~ 350 (515)
.|-.+.
T Consensus 84 ~a~~~~ 89 (104)
T 1p1t_A 84 NAASEK 89 (104)
T ss_dssp ETTCTT
T ss_pred eCCCcc
Confidence 765443
No 44
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.97 E-value=0.0032 Score=50.58 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=31.6
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
....+||.|.|||.+++ +++|+++|+++ |.|.++.+.+|
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 50 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGID----DERLRKAFSPF--GTITSAKVMME 50 (103)
T ss_dssp CSSCCCEEEECCCTTCC----HHHHHHTTTTT--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEcC
Confidence 35788999999999987 78899999886 56877776643
No 45
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.97 E-value=0.0028 Score=50.38 Aligned_cols=39 Identities=8% Similarity=0.213 Sum_probs=31.7
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCc
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~ 231 (515)
...++|.|.|||.+++ +++|+++|+++ |.|.++.+.+|.
T Consensus 3 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~ 41 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTT----EETLKGVFSKV--GAIKSCTISKKK 41 (98)
T ss_dssp CCCCCEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEecC
Confidence 4578999999999987 79999999986 578888766443
No 46
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.92 E-value=0.0018 Score=51.51 Aligned_cols=39 Identities=23% Similarity=0.198 Sum_probs=30.3
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccC--CCCceeeeeCCCCC
Q 010216 312 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPESR 350 (515)
Q Consensus 312 ~~~~aFVtF~~~~~a~~a~q~~~~~--~~~~~~v~~AP~P~ 350 (515)
+.+.|||+|.+..+|..|.+.++.. ....++|+.|-.|.
T Consensus 56 ~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (98)
T 2cqp_A 56 PTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGPS 96 (98)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCSS
T ss_pred eeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCCC
Confidence 4589999999999999999877644 33457788876654
No 47
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=96.92 E-value=0.0047 Score=50.21 Aligned_cols=37 Identities=5% Similarity=0.173 Sum_probs=30.4
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 228 (515)
....+||.|.|||.+++ +++|+++|+++ |.|.++.+.
T Consensus 23 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~ 59 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQ----EDEIQEKFCDY--GEIKNIHLN 59 (110)
T ss_dssp BTTBEEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEECC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEE
Confidence 45678999999999887 78899999987 567777654
No 48
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.90 E-value=0.0026 Score=51.06 Aligned_cols=38 Identities=11% Similarity=0.283 Sum_probs=31.2
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 229 (515)
....+||.|.|||.+++ +++|+++|+++ |.|.++.+.+
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~i~~v~i~~ 49 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTR----ETDLQELFRPF--GSISRIYLAK 49 (103)
T ss_dssp CSSSEEEEEESCCTTCC----HHHHHTTSTTT--CCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCeEEEEEee
Confidence 35689999999999987 78899999886 5787777663
No 49
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=96.90 E-value=0.0039 Score=50.41 Aligned_cols=40 Identities=15% Similarity=0.102 Sum_probs=32.4
Q ss_pred CCCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010216 185 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 185 ~~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
.....++|.|.|||.+++ +++|+++|+++ |.|.++.+.+|
T Consensus 25 ~~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 64 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVS----DADIQELFAEF--GTLKKAAVHYD 64 (107)
T ss_dssp CCCCSEEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEEC
Confidence 346689999999999987 78999999986 67877776643
No 50
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=96.90 E-value=0.0056 Score=51.01 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=30.5
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 229 (515)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 33 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~v~i~~ 69 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVS----DADIQELFAEF--GTLKKAAVDY 69 (124)
T ss_dssp SSCEEEEEESCCSSCC----HHHHHHHHHTT--SCCSEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEEE
Confidence 4578999999999887 78899999986 5787777653
No 51
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=96.89 E-value=0.0058 Score=48.64 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=27.5
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcce
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYR 224 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~ 224 (515)
.+..++|.|.|||.+.+ +++|+++|+++ |.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~ 42 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVT----IESVADYFKQI--GIIKT 42 (99)
T ss_dssp CCCCSEEEEECCCSSCC----HHHHHHHHTTT--SCBCE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHHh--CCEee
Confidence 46789999999999987 79999999986 45655
No 52
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.89 E-value=0.0053 Score=49.31 Aligned_cols=40 Identities=18% Similarity=0.315 Sum_probs=32.0
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
....++|.|.|||.+++ +++|+++|++.+ |.|.++.+.+|
T Consensus 6 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~~-G~v~~v~i~~~ 45 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVD----DGMLYEFFVKVY-PSCRGGKVVLD 45 (104)
T ss_dssp SSCCCCEEEECCCTTCC----HHHHHHHHHHHC-TTEEEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCC----HHHHHHHHHHhC-CCeEEEEEEEC
Confidence 35679999999999986 799999999833 67888776643
No 53
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=96.87 E-value=0.004 Score=54.23 Aligned_cols=81 Identities=15% Similarity=0.131 Sum_probs=60.7
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~ 266 (515)
...+||.|.|||.+++ +++|+++|+++ |.|.++.+.+|..
T Consensus 37 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~---------------------------------- 76 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTT----EEQIYELFSKS--GDIKKIIMGLDKM---------------------------------- 76 (156)
T ss_dssp TTCCEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEECTT----------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEecCC----------------------------------
Confidence 4679999999999887 79999999987 5688887764321
Q ss_pred CCCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccC--CCCceeee
Q 010216 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 344 (515)
Q Consensus 267 ~rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~--~~~~~~v~ 344 (515)
.....+.|||+|.+..+|..|.+.+... ....+.|+
T Consensus 77 ------------------------------------------~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 77 ------------------------------------------KKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp ------------------------------------------TCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred ------------------------------------------CCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 0123479999999999999999976544 23456777
Q ss_pred eCCCC
Q 010216 345 DAPES 349 (515)
Q Consensus 345 ~AP~P 349 (515)
.|.++
T Consensus 115 ~a~~~ 119 (156)
T 1h2v_Z 115 WDAGF 119 (156)
T ss_dssp EESCC
T ss_pred ECCCC
Confidence 76443
No 54
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.86 E-value=0.0054 Score=49.90 Aligned_cols=37 Identities=11% Similarity=0.207 Sum_probs=30.8
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 228 (515)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.+.
T Consensus 26 ~~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~ 62 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFR----DPDLRQMFGQF--GKILDVEII 62 (109)
T ss_dssp TTCCCEEEEESCCTTCC----HHHHHHHGGGT--CCCSCEEEC
T ss_pred CCCCCEEEEECCCCcCC----HHHHHHHHHhc--CCEEEEEEE
Confidence 46789999999999987 79999999987 577777655
No 55
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=96.85 E-value=0.0062 Score=50.85 Aligned_cols=38 Identities=8% Similarity=0.156 Sum_probs=30.9
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 229 (515)
....+||.|.|||.+++ +++|+++|+++ |.|.++.+.+
T Consensus 19 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 56 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEAT----EEDIHDKFAEY--GEIKNIHLNL 56 (126)
T ss_dssp CSSSEEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEECCB
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 45678999999999886 79999999986 5777776553
No 56
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.85 E-value=0.0019 Score=54.01 Aligned_cols=40 Identities=28% Similarity=0.300 Sum_probs=32.1
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCC--CCcceEEEecC
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYP--DTFYRSMVVTN 230 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p--~~v~~v~i~~d 230 (515)
...++|.|.|||.+.+ +++|+++|+++.+ +.|.++.+++|
T Consensus 21 ~~~~~v~V~nLp~~~t----e~dl~~~F~~~g~v~g~v~~v~i~~d 62 (123)
T 2dha_A 21 ENQVIVRMRGLPFTAT----AEEVVAFFGQHCPITGGKEGILFVTY 62 (123)
T ss_dssp CSCCEEEECSCCTTCC----HHHHHHHHHTTSCCTTGGGGEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhhCCccCCcceEEEEEC
Confidence 4478999999999987 7999999998754 44677777654
No 57
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=96.85 E-value=0.0032 Score=48.73 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=32.6
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 8 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 46 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTS----KKDLKDYFTKF--GEVVDCTIKMD 46 (87)
T ss_dssp CSCTTEEEEECCCTTCC----HHHHHHHHTTT--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEeec
Confidence 46789999999999986 79999999886 67888877644
No 58
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=96.84 E-value=0.0025 Score=49.73 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=28.4
Q ss_pred ceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 010216 190 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (515)
Q Consensus 190 ~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 229 (515)
+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 2 ~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 35 (90)
T 2ki2_A 2 RNIYVGNLVYSAT----SEQVKELFSQF--GKVFNVKLIY 35 (90)
T ss_dssp EEEEEEEECTTSS----HHHHTTTHHHH--TCCSEEEECC
T ss_pred cEEEECCCCCCCC----HHHHHHHHHhc--CCEEEEEEEE
Confidence 6899999999887 78899999997 5787777653
No 59
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=96.83 E-value=0.0059 Score=51.89 Aligned_cols=38 Identities=8% Similarity=0.079 Sum_probs=30.8
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 229 (515)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 60 ~~~~~~l~v~nlp~~~~----~~~l~~~f~~~--G~i~~v~i~~ 97 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVD----DKVLHAAFIPF--GDITDIQIPL 97 (140)
T ss_dssp CSSCCEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEECCC
T ss_pred CCCCcEEEEEeCCCCCC----HHHHHHHHHhc--CCEEEEEEee
Confidence 35678999999999887 79999999987 5677776543
No 60
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.82 E-value=0.0035 Score=50.57 Aligned_cols=37 Identities=5% Similarity=0.190 Sum_probs=31.7
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 229 (515)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 9 ~~~~~lfV~~Lp~~~t----e~~L~~~F~~~--G~v~~v~i~~ 45 (103)
T 1s79_A 9 VKNRSVYIKGFPTDAT----LDDIKEWLEDK--GQVLNIQMRR 45 (103)
T ss_dssp SGGGCEEEECCCTTCC----HHHHHHHHHTS--SCEEEEEEEC
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHhhc--CCEEEEEEEE
Confidence 5689999999999987 79999999986 6788887763
No 61
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.79 E-value=0.0033 Score=47.35 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=27.4
Q ss_pred ceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 010216 190 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (515)
Q Consensus 190 ~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 229 (515)
.||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 1 ~~l~v~nlp~~~t----~~~l~~~F~~~--G~v~~v~i~~ 34 (77)
T 1uaw_A 1 CKMFIGGLSWQTT----QEGLREYFGQF--GEVKECLVMR 34 (77)
T ss_dssp CCEEEESCCSSCC----SHHHHHHHTTT--SCCCCEEEEC
T ss_pred CEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEec
Confidence 4799999999987 58899999986 5677776654
No 62
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=96.79 E-value=0.0023 Score=51.32 Aligned_cols=35 Identities=17% Similarity=0.087 Sum_probs=27.2
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccCC--C-CceeeeeC
Q 010216 312 QLGAALVFFTSRVAAASAAQSLHAQL--V-DTWTVSDA 346 (515)
Q Consensus 312 ~~~~aFVtF~~~~~a~~a~q~~~~~~--~-~~~~v~~A 346 (515)
+.|.|||+|.+..+|..|.+.+.... . ..++|..|
T Consensus 53 ~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a 90 (100)
T 3ns6_A 53 TKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTM 90 (100)
T ss_dssp ECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEES
T ss_pred cceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEEC
Confidence 45899999999999999998876543 2 45667666
No 63
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.78 E-value=0.0063 Score=47.52 Aligned_cols=38 Identities=16% Similarity=0.151 Sum_probs=30.7
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
....++|.|.|||.+.+ +++|+++|+++ .|.++.+.+|
T Consensus 7 ~~~~~~l~v~nLp~~~t----~~~l~~~F~~~---~i~~v~i~~~ 44 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVT----EKNVMEFLAPL---KPVAIRIVRN 44 (91)
T ss_dssp CCCCCEEEEECCCSSCC----HHHHHHHHTTS---CCSEEEEEEC
T ss_pred CCCccEEEEECCCCCCC----HHHHHHHHhhC---CceEEEEEEC
Confidence 35679999999999887 78999999876 5777776644
No 64
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.78 E-value=0.012 Score=45.80 Aligned_cols=36 Identities=11% Similarity=0.206 Sum_probs=29.2
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEE
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i 227 (515)
....++|.|.|||.+++ +++|+++|+++ |.|.++.+
T Consensus 6 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~~~~ 41 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACT----SQELRSLFERR--GRVIECDV 41 (90)
T ss_dssp SCCSCCEEEESCCTTCC----HHHHHHHHHHH--SCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHcC--CCEEEEEE
Confidence 46789999999999886 78999999987 45666654
No 65
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=96.76 E-value=0.005 Score=51.88 Aligned_cols=79 Identities=14% Similarity=0.126 Sum_probs=59.3
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 265 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~ 265 (515)
....++|.|.|||.+++ +++|+++|+++ |.|.++.+.+|-.
T Consensus 43 ~~~~~~l~V~nLp~~~t----e~~L~~~F~~~--G~I~~v~i~~d~~--------------------------------- 83 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTT----ERDLREVFSKY--GPIADVSIVYDQQ--------------------------------- 83 (129)
T ss_dssp CCCSSCBCEETCTTSCC----HHHHHHHHTTT--SCEEEEEEECCSS---------------------------------
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEecCC---------------------------------
Confidence 35678999999999987 78999999986 5788777664311
Q ss_pred CCCCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC--CCceee
Q 010216 266 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTV 343 (515)
Q Consensus 266 ~~rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v 343 (515)
..+..|.|||+|++..+|..|.+.+.... ...+.|
T Consensus 84 -------------------------------------------tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 84 -------------------------------------------SRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp -------------------------------------------SSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred -------------------------------------------CCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 11345799999999999999999776543 235666
Q ss_pred eeC
Q 010216 344 SDA 346 (515)
Q Consensus 344 ~~A 346 (515)
+.|
T Consensus 121 ~~a 123 (129)
T 2kxn_B 121 DFS 123 (129)
T ss_dssp SCC
T ss_pred EEe
Confidence 665
No 66
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.75 E-value=0.0089 Score=48.77 Aligned_cols=37 Identities=24% Similarity=0.151 Sum_probs=27.5
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccCC--CCceeeeeCC
Q 010216 311 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAP 347 (515)
Q Consensus 311 ~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~AP 347 (515)
+..+.|||+|.+..+|..|.+.++... ...++|+.|-
T Consensus 63 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (113)
T 2cpe_A 63 KPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLAR 101 (113)
T ss_dssp SBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSS
T ss_pred CeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECC
Confidence 456899999999999999998765442 3345666653
No 67
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.75 E-value=0.0061 Score=48.88 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=31.4
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
....+||.|.|||.+++ +++|+++|+++ + |.++.+.+|
T Consensus 12 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--g-i~~v~i~~~ 49 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTV----QGDIDAIFKDL--S-IRSVRLVRD 49 (103)
T ss_dssp SSSCEEEEEESCCTTCC----HHHHHHHTTTS--C-EEEEEEEEC
T ss_pred CCCCeEEEEeCCCCCCC----HHHHHHHHHhC--C-ceEEEEeec
Confidence 45679999999999987 78999999986 4 888877643
No 68
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.75 E-value=0.014 Score=46.05 Aligned_cols=37 Identities=8% Similarity=0.032 Sum_probs=29.3
Q ss_pred CCccceEEEecCCCCCCCCChHHHHH----HHHHHhCCCCcceEEEe
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVD----SYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~----~~f~~~~p~~v~~v~i~ 228 (515)
....++|.|.|||.+.+ +++|+ ++|+++ |.|.++.+.
T Consensus 6 ~~~~~~l~V~nL~~~~~----~~~l~~~l~~~F~~~--G~v~~v~i~ 46 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLS----RKELQQLLQEAFARH--GKVKSVELS 46 (96)
T ss_dssp CSSCEEEEEESCCTTSC----HHHHHHHHHHHHHHH--SCEEEEEEC
T ss_pred CCCCCEEEEECCCCCCC----HHHHHHHHHHhcccc--CcEEEEEEE
Confidence 45678999999999887 67777 899887 567777654
No 69
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.72 E-value=0.011 Score=46.89 Aligned_cols=77 Identities=18% Similarity=0.142 Sum_probs=58.0
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 265 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~ 265 (515)
....+||.|.|||.+++ +++|+++|+++ |.|.++.+.+
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~~~~------------------------------------ 49 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDIT----EEEMRKLFEKY--GKAGEVFIHK------------------------------------ 49 (99)
T ss_dssp CCCTTEEEEESCCTTCC----HHHHHHHTSTT--CCCSEEEEET------------------------------------
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHhhc--CCeEEEEEec------------------------------------
Confidence 35678999999999987 78899999886 5666665430
Q ss_pred CCCCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC--CCceee
Q 010216 266 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTV 343 (515)
Q Consensus 266 ~~rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v 343 (515)
..+.|||+|++..+|..|.+.++... ...++|
T Consensus 50 ----------------------------------------------~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 50 ----------------------------------------------DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83 (99)
T ss_dssp ----------------------------------------------TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEE
T ss_pred ----------------------------------------------CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEE
Confidence 02689999999999999998776543 346778
Q ss_pred eeCCCCC
Q 010216 344 SDAPESR 350 (515)
Q Consensus 344 ~~AP~P~ 350 (515)
+.|-.+.
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpj_A 84 RFACHSA 90 (99)
T ss_dssp EESSCCS
T ss_pred EEcCCCC
Confidence 8775443
No 70
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=96.72 E-value=0.0077 Score=53.76 Aligned_cols=86 Identities=17% Similarity=0.178 Sum_probs=63.5
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~ 266 (515)
....||.|.|||.+++ +++|+++|+++ |.|.++.+.+|..
T Consensus 86 ~~~~~l~V~nLp~~~t----e~~L~~~F~~~--G~I~~v~i~~d~~---------------------------------- 125 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVS----DADIQELFAEF--GTLKKAAVDYDRS---------------------------------- 125 (177)
T ss_dssp TTCEEEEEECCCSCCC----HHHHHHHHHHT--SCCSEEEECCCTT----------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEECCC----------------------------------
Confidence 4578999999999887 78999999986 5777777654310
Q ss_pred CCCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC--CCceeee
Q 010216 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVS 344 (515)
Q Consensus 267 ~rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~ 344 (515)
....+.|||+|.+..+|..|.+.+.... ...+.|+
T Consensus 126 -------------------------------------------g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 126 -------------------------------------------GRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp -------------------------------------------SSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred -------------------------------------------CCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 1345899999999999999999766542 3457788
Q ss_pred eCCCCCccccc
Q 010216 345 DAPESRELIWN 355 (515)
Q Consensus 345 ~AP~P~DIiW~ 355 (515)
.|..+....|.
T Consensus 163 ~a~~~~~~~~~ 173 (177)
T 2f3j_A 163 LVASQIDLEHH 173 (177)
T ss_dssp EESSGGGGCC-
T ss_pred EecCCCCCCCC
Confidence 77655544443
No 71
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=96.71 E-value=0.0045 Score=51.05 Aligned_cols=37 Identities=16% Similarity=0.272 Sum_probs=30.2
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 228 (515)
....+||.|.|||.+++ +++|+++|+++ |.|.++.+.
T Consensus 37 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~~~i~ 73 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFT----DTDLASTFLPF--GNVISAKVF 73 (118)
T ss_dssp CCCSEEEEEECSCTTCC----HHHHHHHTTTS--CEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEE
Confidence 35679999999999986 79999999886 567777655
No 72
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=96.70 E-value=0.012 Score=48.18 Aligned_cols=95 Identities=17% Similarity=0.162 Sum_probs=67.1
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~ 266 (515)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|.
T Consensus 6 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~v~i~~~~----------------------------------- 44 (115)
T 3lqv_A 6 EVNRILYIRNLPYKIT----AEEMYDIFGKY--GPIRQIRVGNTP----------------------------------- 44 (115)
T ss_dssp TCCSEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEECST-----------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEeeCC-----------------------------------
Confidence 4578999999999887 78899999986 677777665210
Q ss_pred CCCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC--CCceeee
Q 010216 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVS 344 (515)
Q Consensus 267 ~rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~ 344 (515)
...|.|||+|.+..+|..|.+.++... ...+.|+
T Consensus 45 --------------------------------------------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 45 --------------------------------------------ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp --------------------------------------------TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred --------------------------------------------CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 124789999999999999999776543 3456777
Q ss_pred eCCCCCcccccccccchHHHHHHH
Q 010216 345 DAPESRELIWNNLNIKFFQRQIRQ 368 (515)
Q Consensus 345 ~AP~P~DIiW~NL~~~~~~r~~R~ 368 (515)
.|-++.+- +|+.....+..++.
T Consensus 81 ~a~~~~~~--~~~~~~~~~~~l~~ 102 (115)
T 3lqv_A 81 YYNANRAF--QKMDTKKKEEQLKL 102 (115)
T ss_dssp ECCHHHHT--TTSCHHHHHHHHHH
T ss_pred EecCChhh--hhhhHhHhHHHHHH
Confidence 77544432 55554444444443
No 73
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=96.69 E-value=0.0078 Score=50.57 Aligned_cols=44 Identities=9% Similarity=0.181 Sum_probs=34.6
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccCC--CCceeeeeCCCCCccccc
Q 010216 312 QLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPESRELIWN 355 (515)
Q Consensus 312 ~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~AP~P~DIiW~ 355 (515)
..|.|||+|.+..+|..|.+.+.... ...++|+.|-.+.|...+
T Consensus 71 ~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~~~~~ 116 (127)
T 2a3j_A 71 NSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQSQVAE 116 (127)
T ss_dssp SCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCCHHHHC
T ss_pred cCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcchhccc
Confidence 34789999999999999998876543 346788888887776654
No 74
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=96.69 E-value=0.012 Score=47.14 Aligned_cols=38 Identities=16% Similarity=0.144 Sum_probs=31.4
Q ss_pred CCCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 010216 185 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 185 ~~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 228 (515)
..+.+++|.|+|||.+.+ +++|++.|+++ |.|.++.+.
T Consensus 17 ~~~ps~~l~V~NLp~~~t----e~~L~~lF~~f--G~V~~v~i~ 54 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVV----EADLVEALQEF--GPISYVVVM 54 (100)
T ss_dssp CCCCCSEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEE
T ss_pred cCCCCcEEEEeCCCCCCC----HHHHHHHHhcc--CCEEEEEEE
Confidence 456789999999999886 79999999987 678777553
No 75
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.69 E-value=0.0046 Score=47.60 Aligned_cols=37 Identities=5% Similarity=0.094 Sum_probs=30.2
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 229 (515)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 3 ~~~~~l~v~nlp~~~t----~~~l~~~f~~~--G~i~~~~i~~ 39 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTT----DQDLVKLCQPY--GKIVSTKAIL 39 (85)
T ss_dssp CCCCEEEEESCCTTCC----HHHHHTTSTTT--SCEEEEEEEC
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 4578999999999987 78899999876 5777776653
No 76
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=96.68 E-value=0.0038 Score=46.78 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=25.7
Q ss_pred eEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 010216 191 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 191 TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 228 (515)
||.|.|||.+.+ +++|+++|+++ |.|.++.+.
T Consensus 1 ~l~v~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~ 32 (75)
T 1iqt_A 1 KIFVGGLSPDTP----EEKIREYFGGF--GEVESIELP 32 (75)
T ss_dssp CEEESCCCSSCC----HHHHHHHHHHH--SCCSEECCC
T ss_pred CEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEE
Confidence 689999999987 78999999997 557666543
No 77
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=96.68 E-value=0.0054 Score=45.91 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=25.3
Q ss_pred eEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 010216 191 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 191 TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 228 (515)
+|.|.|||.+.+ +++|+++|+++ |.|.++.+.
T Consensus 1 ~l~v~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~ 32 (75)
T 2mss_A 1 KIFVGGLSVNTT----VEDVKHYFEQF--GKVDDAMLM 32 (75)
T ss_dssp CEEEECCCSSCC----HHHHHHHHHTT--SCCSEECCC
T ss_pred CEEEecCCCCCC----HHHHHHHHHhc--CCEEEEEEE
Confidence 478999999887 78999999986 567666543
No 78
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.68 E-value=0.016 Score=45.28 Aligned_cols=36 Identities=6% Similarity=0.103 Sum_probs=29.2
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEE
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i 227 (515)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.+
T Consensus 7 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~v~~v~~ 42 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCT----NQELRAKFEEY--GPVIECDI 42 (92)
T ss_dssp CCSSEEEEEESCCSSCC----HHHHHHHHHTT--SCCCEEEE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEE
Confidence 46789999999999986 79999999986 56666653
No 79
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.67 E-value=0.014 Score=47.32 Aligned_cols=37 Identities=11% Similarity=0.171 Sum_probs=30.3
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 228 (515)
....+||.|.|||.+++ +++|+++|+++ |.|.++.+.
T Consensus 22 ~~~~~~l~V~nl~~~~t----~~~l~~~F~~~--G~i~~v~i~ 58 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLT----DQLMRQTFSPF--GQIMEIRVF 58 (109)
T ss_dssp CSSCCEEEEECCSSCCC----HHHHHHHHHHH--SCEEEEEEE
T ss_pred CCCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEe
Confidence 36689999999999887 79999999987 567766554
No 80
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=96.67 E-value=0.0028 Score=49.96 Aligned_cols=33 Identities=15% Similarity=0.274 Sum_probs=25.0
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceE
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRS 225 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v 225 (515)
+..++|.|.|||.+.+ +++|+++|+++ |.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~~ 45 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVS----IDEILDFFYGY--QVIPGS 45 (95)
T ss_dssp --CEEEEEECCCTTCC----HHHHHHHTTTS--CBCTTC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCccce
Confidence 5679999999999887 78999999876 344433
No 81
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.66 E-value=0.0066 Score=49.63 Aligned_cols=38 Identities=13% Similarity=0.108 Sum_probs=30.9
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 229 (515)
....+||.|.|||.+++ +++|+++|+++ |.|.++.+.+
T Consensus 12 ~~~~~~l~V~nlp~~~~----~~~l~~~f~~~--G~i~~~~i~~ 49 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVG----WKKLKEVFSMA--GVVVRADILE 49 (114)
T ss_dssp CCCCSCEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEE
Confidence 35678999999999886 79999999986 5777776653
No 82
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.65 E-value=0.019 Score=45.17 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=27.5
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceE
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRS 225 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v 225 (515)
...++|.|.|||.+.+ +++|+++|+++ |.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~~ 45 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQ----WEVLDSLLVQY--GVVESC 45 (96)
T ss_dssp CSCCCEEEEEECSSSC----HHHHHHHHHHH--SCEEEE
T ss_pred CCCCEEEEEcCCCCCC----HHHHHHHHHhc--CCeEEE
Confidence 4578999999999887 78899999987 566665
No 83
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.65 E-value=0.0091 Score=48.40 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=28.4
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEE
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i 227 (515)
...++|.|.|||.+++ +++|+++|+++ |.|.++.+
T Consensus 13 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~~~i 47 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGS----WQDLKDHMREA--GDVCYADV 47 (108)
T ss_dssp SCCCEEEEESCCSSCC----HHHHHHHHGGG--SCEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEeEEEE
Confidence 4678999999999887 79999999987 45666543
No 84
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.0095 Score=51.76 Aligned_cols=33 Identities=12% Similarity=0.210 Sum_probs=28.3
Q ss_pred ceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 010216 190 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 190 ~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 228 (515)
|||.|.|||.+.+ +++|+++|+++ |.|.++.+.
T Consensus 1 R~l~V~nlp~~~t----~~~l~~~f~~~--G~i~~v~i~ 33 (166)
T 3md3_A 1 RVLYVGNLDKAIT----EDILKQYFQVG--GPIANIKIM 33 (166)
T ss_dssp CEEEEEEEETTCC----HHHHHHHHGGG--SCEEEEEEE
T ss_pred CEEEECCCCCcCC----HHHHHHHHHhc--CCeEEEEEE
Confidence 6899999999987 78999999987 568777766
No 85
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=96.64 E-value=0.011 Score=48.46 Aligned_cols=35 Identities=9% Similarity=0.114 Sum_probs=27.7
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEE
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSM 226 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~ 226 (515)
...++|.|.|||.+.+ +++|+++|+++.+ .|..+.
T Consensus 26 ~~~~~l~VgnLp~~~t----e~dL~~~F~~~G~-~v~~v~ 60 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCS----WQDLKDLARENSL-ETTFSS 60 (111)
T ss_dssp CCCEEEEEECSSCCCC----HHHHHHHHHHHTC-CCSEEE
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHHHhCC-eeEEEE
Confidence 5678999999999987 7999999998732 555443
No 86
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.64 E-value=0.0048 Score=50.66 Aligned_cols=31 Identities=16% Similarity=0.300 Sum_probs=26.0
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcc
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFY 223 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~ 223 (515)
...++|.|.|||.+.+ +++|+++|+++ |.|.
T Consensus 6 ~~~~~lfVgnLp~~~t----e~~L~~~F~~~--G~i~ 36 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDID----EDEITASFRRF--GPLV 36 (114)
T ss_dssp SCCCCEEEECCCTTCC----HHHHHHHTTTT--CCCC
T ss_pred CCCCEEEEcCCCCCCC----HHHHHHHHHhc--CCEE
Confidence 4578999999999987 79999999986 4554
No 87
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.62 E-value=0.013 Score=47.32 Aligned_cols=37 Identities=11% Similarity=0.263 Sum_probs=29.2
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 228 (515)
...+||.|.|||.+.+ +++|+++|+++.+ .|.++.+.
T Consensus 6 ~~~~~l~V~nLp~~~t----~~~l~~~f~~~G~-~v~~v~i~ 42 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKK----REEILEEIAKVTE-GVLDVIVY 42 (109)
T ss_dssp CCSEEEEEECCCTTSC----HHHHHHHHHHHST-TEEEEECC
T ss_pred cCCCEEEEeCCCCcCC----HHHHHHHHHHhcC-CceEEEEE
Confidence 5689999999999887 7999999999842 26666543
No 88
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=96.62 E-value=0.0096 Score=54.69 Aligned_cols=102 Identities=14% Similarity=0.117 Sum_probs=71.1
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~ 266 (515)
...+||.|.|||.+++ +++|+++|+++ |.|.++.+.+|..
T Consensus 13 ~p~~tlfVgnLp~~~t----e~~L~~~F~~~--G~I~~v~i~~d~~---------------------------------- 52 (213)
T 4f02_A 13 YPMASLYVGDLHPDVT----EAMLYEKFSPA--GPILSIRVCRDMI---------------------------------- 52 (213)
T ss_dssp --CCEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEECTT----------------------------------
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhh--CCEEEEEEecccC----------------------------------
Confidence 3468999999999987 79999999997 6788888765321
Q ss_pred CCCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC--CCceeee
Q 010216 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVS 344 (515)
Q Consensus 267 ~rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~ 344 (515)
..+..|.|||+|.+..+|..|.+.+.... ...+++.
T Consensus 53 ------------------------------------------tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 53 ------------------------------------------TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ------------------------------------------TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ------------------------------------------CCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 01245899999999999999998765432 2233444
Q ss_pred eCCC--------CCcccccccccchHHHHHHHHH
Q 010216 345 DAPE--------SRELIWNNLNIKFFQRQIRQYV 370 (515)
Q Consensus 345 ~AP~--------P~DIiW~NL~~~~~~r~~R~~~ 370 (515)
.+.. ...|.=.||..+..+..++.++
T Consensus 91 ~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F 124 (213)
T 4f02_A 91 WSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTF 124 (213)
T ss_dssp ECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHH
T ss_pred cccccccccccccccceECCcccccHHHHHHHHH
Confidence 4432 2346777777776666666544
No 89
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=96.61 E-value=0.0079 Score=52.87 Aligned_cols=103 Identities=20% Similarity=0.302 Sum_probs=71.7
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 010216 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (515)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~~ 267 (515)
.++||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|...
T Consensus 2 ~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~~~~~---------------------------------- 41 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWS----EKDLRELFEQY--GAVYEINVLRDRSQ---------------------------------- 41 (175)
T ss_dssp CCEEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEEEECSS----------------------------------
T ss_pred CceEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEEecCCC----------------------------------
Confidence 468999999999987 79999999987 57888877644220
Q ss_pred CCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC-----CCcee
Q 010216 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL-----VDTWT 342 (515)
Q Consensus 268 rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~-----~~~~~ 342 (515)
| ..+..|.|||+|.+..+|..|.+.++... ...+.
T Consensus 42 ------------~----------------------------~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 42 ------------N----------------------------PPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp ------------S----------------------------SCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred ------------C----------------------------CCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 0 01346899999999999999998765432 22333
Q ss_pred eeeC-------CCCCcccccccccchHHHHHHHHH
Q 010216 343 VSDA-------PESRELIWNNLNIKFFQRQIRQYV 370 (515)
Q Consensus 343 v~~A-------P~P~DIiW~NL~~~~~~r~~R~~~ 370 (515)
+..+ ++...|.=.||..+..+..++.++
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F 116 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMF 116 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHH
T ss_pred EccccccccccCCCCeEEEcCCCCcCCHHHHHHHH
Confidence 3332 233457777887776666666544
No 90
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=96.61 E-value=0.0092 Score=50.70 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=31.0
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 229 (515)
...+||.|.|||.+++ +++|+++|+++ |.|.++.+.+
T Consensus 40 ~~~~~l~V~nLp~~~~----~~~l~~~F~~~--G~i~~v~i~~ 76 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVD----EVQLRQLFERY--GPIESVKIVC 76 (139)
T ss_dssp TTTSEEEEESCSTTCC----HHHHHHHHHHH--SCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEE
Confidence 4568999999999887 78999999998 6788887664
No 91
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.58 E-value=0.019 Score=46.25 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=30.1
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 228 (515)
.+..++|.|.|||.+.+ +++|+++|+++ |.|.++.+.
T Consensus 12 ~~p~~~l~V~nLp~~~t----e~~L~~~F~~f--G~V~~v~i~ 48 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVV----EADLVEALEKF--GTICYVMMM 48 (104)
T ss_dssp CCCCSEEEEESCCSSCC----HHHHHHHHTTT--SCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEE
Confidence 45679999999999886 78999999986 677776543
No 92
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.58 E-value=0.018 Score=44.73 Aligned_cols=36 Identities=11% Similarity=0.304 Sum_probs=28.4
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEE
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i 227 (515)
....+||.|.|||.+.+ +++|+++|+++ |.|.++.+
T Consensus 5 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~~ 40 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREAT----EQEIRSLFEQY--GKVLECDI 40 (90)
T ss_dssp SSCCEEEEEESCCSSCC----HHHHHHHHHTS--SCEEEEEE
T ss_pred CCCCeEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEE
Confidence 35689999999999887 78899999876 45665543
No 93
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.56 E-value=0.017 Score=46.82 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=28.9
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEE
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i 227 (515)
...+||.|.|||.+++ +++|+++|+++ |.|.++.+
T Consensus 20 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~v~~~~i 54 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIR----TKDIEDVFYKY--GAIRDIDL 54 (109)
T ss_dssp CCSSEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEE
Confidence 5678999999999886 79999999987 56766644
No 94
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=96.54 E-value=0.0097 Score=48.38 Aligned_cols=38 Identities=13% Similarity=0.270 Sum_probs=29.5
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 23 ~~~~~lfV~nLp~~~t----e~~L~~~F~~~--G~i~~v~i~~~ 60 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTT----QEGLREYFGQF--GEVKECLVMRD 60 (109)
T ss_dssp ---CCEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHcc--CCeEEEEEEEC
Confidence 5678999999999887 78999999986 67888776643
No 95
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=96.54 E-value=0.0025 Score=54.31 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=30.1
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCC-CcceEEEec
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPD-TFYRSMVVT 229 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~-~v~~v~i~~ 229 (515)
...++|.|.|||.+.+ +++|+++|+++.+- .|.++.+++
T Consensus 42 ~~~~~lfVgnLp~~~t----e~dL~~~F~~~G~v~~v~~v~i~~ 81 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCS----VEDVQNFLSDCTIHDGAAGVHFIY 81 (136)
T ss_dssp CTTCEEEEESCCTTCC----HHHHHHHTTTCCCSSSSTTEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHhCCcCceeEEEEEE
Confidence 4578999999999987 79999999986321 166777664
No 96
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=96.53 E-value=0.0042 Score=49.67 Aligned_cols=38 Identities=11% Similarity=0.371 Sum_probs=28.0
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
....+||.|.|||.+.+ +++|+++|+++ | |.++.+.+|
T Consensus 16 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G-i~~v~i~~~ 53 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVT----EESIKEFFRGL--N-ISAVRLPRE 53 (100)
T ss_dssp ----CEEEESCCSSCCS----SSHHHHHSCSS--C-EEEEECSCC
T ss_pred CCCCcEEEEeCCCCCCC----HHHHHHHHHhc--C-CeEEEEEec
Confidence 35689999999999987 58899999876 5 877776543
No 97
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.51 E-value=0.0087 Score=48.89 Aligned_cols=35 Identities=14% Similarity=0.332 Sum_probs=28.0
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEE
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i 227 (515)
.+.+||.|.|||.+.+ +++|+++|+++ |.|.++.+
T Consensus 8 ~~~~~l~V~nLp~~~t----e~~L~~~F~~~--G~i~~v~i 42 (111)
T 1whx_A 8 RSKTVILAKNLPAGTL----AAEIQETFSRF--GSLGRVLL 42 (111)
T ss_dssp EEEEEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEE
Confidence 3578999999999886 79999999986 56665543
No 98
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.50 E-value=0.012 Score=51.18 Aligned_cols=37 Identities=8% Similarity=0.054 Sum_probs=30.5
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 229 (515)
...++|.|.|||.+++ +++|+++|+++ |.|.++.+.+
T Consensus 68 ~~~~~l~v~nl~~~~~----~~~l~~~F~~~--G~v~~~~i~~ 104 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTS----PDTLRRVFEKY--GRVGDVYIPR 104 (158)
T ss_dssp CBCCEEEEESCCTTCC----HHHHHHHHHHH--SCEEEEECCC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEee
Confidence 4578999999999987 79999999987 5777776553
No 99
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.49 E-value=0.02 Score=45.24 Aligned_cols=35 Identities=9% Similarity=-0.016 Sum_probs=28.0
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEE
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSM 226 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~ 226 (515)
.+..++|.|.|||.+++ +++|+++|+++ |.|.++.
T Consensus 14 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~v~ 48 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTS----LAALAREFDRF--GSIRTID 48 (97)
T ss_dssp CCCCSCEEEECCCSSCC----HHHHHHHHHTT--SCEEEEE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEE
Confidence 35678999999999976 78999999886 4566553
No 100
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=96.48 E-value=0.0079 Score=51.07 Aligned_cols=36 Identities=8% Similarity=0.057 Sum_probs=29.6
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 228 (515)
...+||.|.|||.+++ +++|+++|+++ |.|.++.+.
T Consensus 45 ~~~~~l~V~nLp~~~t----e~~L~~~F~~~--G~i~~v~i~ 80 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTS----PDTLRRVFEKY--GRVGDVYIP 80 (135)
T ss_dssp GGCCCEEEECCCSSCH----HHHHHHHHGGG--SCCSEEECC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEE
Confidence 4568999999999876 79999999987 567777654
No 101
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=96.48 E-value=0.014 Score=47.31 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=27.1
Q ss_pred ceEEEEeCCHHHHHHHHHHhccC--CCCceeeeeCCCC
Q 010216 314 GAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPES 349 (515)
Q Consensus 314 ~~aFVtF~~~~~a~~a~q~~~~~--~~~~~~v~~AP~P 349 (515)
+.|||+|.+..+|..|.+.++.. ....++|+.|-+|
T Consensus 63 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 63 GYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp TEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 68999999999999999876554 2345667776443
No 102
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.48 E-value=0.01 Score=48.46 Aligned_cols=37 Identities=8% Similarity=0.259 Sum_probs=30.4
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 229 (515)
...++|.|.|||.+++ +++|+++|+++ |.|.++.+.+
T Consensus 23 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~~~i~~ 59 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMD----EQELENMLKPF--GQVISTRILR 59 (114)
T ss_dssp CCTTEEEEESCCTTCC----HHHHHHTTTTT--SCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEE
Confidence 5678999999999887 78899999886 5677777654
No 103
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=96.48 E-value=0.002 Score=53.40 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=29.9
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCC-CCcceEEEec
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYP-DTFYRSMVVT 229 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p-~~v~~v~i~~ 229 (515)
...+||.|.|||.+.+ +++|+++|+++.+ +.|.++.+++
T Consensus 15 ~~~~~l~V~nLp~~~t----e~~l~~~F~~~G~~~~v~~v~i~~ 54 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCS----IEDVQNFLSDCTIHDGVAGVHFIY 54 (118)
T ss_dssp CCCCEEEEESCCTTCC----HHHHHHHTTTSCBTTGGGGEEEEE
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHHcCCccCceeEEEEE
Confidence 4578999999999987 7899999988643 1266776653
No 104
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=96.48 E-value=0.018 Score=52.47 Aligned_cols=36 Identities=8% Similarity=-0.048 Sum_probs=30.1
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 010216 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (515)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 229 (515)
..+||.|.|||.+++ +++|+++|+++ |.|.++.+.+
T Consensus 27 ~~~~l~V~nLp~~~t----~~~l~~~f~~~--G~i~~v~i~~ 62 (216)
T 2qfj_A 27 IMSRVYVGSIYYELG----EDTIRQAFAPF--GPIKSIDMSW 62 (216)
T ss_dssp HHTEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEEECC
T ss_pred cCCEEEEECCCCCCC----HHHHHHHHHhC--CCEEEEEEee
Confidence 468999999999986 79999999987 6787776653
No 105
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=96.47 E-value=0.011 Score=51.51 Aligned_cols=79 Identities=16% Similarity=0.097 Sum_probs=59.0
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 010216 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (515)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~~ 267 (515)
..++|.|.|||.+++ +++|+++|+++.+..|.++.+++|-..
T Consensus 54 ~~~~lfVgnLp~~~t----e~~L~~~F~~~G~i~v~~v~i~~d~~t---------------------------------- 95 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTT----DQQLIQVIRSIGVYDVVELKFAENRAN---------------------------------- 95 (156)
T ss_dssp --CEEEEECCCTTCC----HHHHHHHHHHTTCCCEEEEEEEECTTT----------------------------------
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHHHCCccEEEEEEEecCCC----------------------------------
Confidence 468999999999987 799999999974337888877754210
Q ss_pred CCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC--CCceeeee
Q 010216 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSD 345 (515)
Q Consensus 268 rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~ 345 (515)
.+..|.|||+|.+..+|..|.+.+.... ...+.|+.
T Consensus 96 ------------------------------------------g~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 96 ------------------------------------------GQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp ------------------------------------------CCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred ------------------------------------------CccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 1235899999999999999999876543 33566776
Q ss_pred C
Q 010216 346 A 346 (515)
Q Consensus 346 A 346 (515)
|
T Consensus 134 a 134 (156)
T 3n9u_C 134 A 134 (156)
T ss_dssp C
T ss_pred c
Confidence 6
No 106
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.45 E-value=0.0052 Score=49.47 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=32.2
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
....++|.|.|||.+++ +++|+++|+++ |.|.++.+.+|
T Consensus 13 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~v~i~~~ 51 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTT----QETLRSYFSQY--GEVVDCVIMKD 51 (105)
T ss_dssp SSSSSEECCBSCCTTCC----HHHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEeeC
Confidence 36689999999999987 79999999986 67888776643
No 107
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=96.43 E-value=0.025 Score=45.21 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=27.5
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEE
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSM 226 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~ 226 (515)
...++|.|.|||.+++ +++|+++|+++ |.|.++.
T Consensus 9 ~~~~~l~V~nl~~~~t----~~~l~~~F~~~--G~i~~v~ 42 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVT----EEILEKAFSQF--GKLERVK 42 (103)
T ss_dssp CCCCCEEEECCCTTCC----HHHHHHHHHHH--SCEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEE
Confidence 4578999999999876 79999999987 4565553
No 108
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.43 E-value=0.012 Score=48.35 Aligned_cols=37 Identities=14% Similarity=0.254 Sum_probs=30.4
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010216 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
..++|.|.|||.+++ +++|+++|+++ |.|.++.+.+|
T Consensus 26 ~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~~ 62 (116)
T 1x4b_A 26 QFRKLFIGGLSFETT----EESLRNYYEQW--GKLTDCVVMRD 62 (116)
T ss_dssp HHTEEEEECCTTCCC----HHHHHHHHTSS--CCCSEEEEECC
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEEC
Confidence 358999999999987 78999999886 67888876644
No 109
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=96.42 E-value=0.011 Score=49.04 Aligned_cols=37 Identities=11% Similarity=0.232 Sum_probs=30.8
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010216 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
..+||.|.|||.+++ +++|+++|+++ |.|.++.+.+|
T Consensus 35 ~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 71 (124)
T 2jwn_A 35 DKRSVYVGNVDYGST----AQDLEAHFSSC--GSINRITILCD 71 (124)
T ss_dssp HHTEEEEEEECTTCC----HHHHHHHHHTT--SCEEEEEEEEE
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEec
Confidence 368999999999987 79999999987 67888877643
No 110
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.38 E-value=0.0096 Score=47.91 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=28.2
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcce-EEEe
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYR-SMVV 228 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~-v~i~ 228 (515)
...++|.|.|||.+.+ +++|+++|+++ |.|.+ +.+.
T Consensus 13 ~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~v~~~v~i~ 49 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCS----KEEIVQFFSGL--EIVPNGMTLP 49 (104)
T ss_dssp SCCCEEEEESCCTTCC----HHHHHHHTTTC--CEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCcceeEEEE
Confidence 5679999999999987 79999999876 45554 4443
No 111
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.36 E-value=0.013 Score=48.05 Aligned_cols=80 Identities=10% Similarity=0.059 Sum_probs=60.1
Q ss_pred CccceEEEecCCCC-CCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 010216 187 PQQFAVLVRDLPDL-PKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 265 (515)
Q Consensus 187 ~~~~TVlV~~IP~~-~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~ 265 (515)
...++|.|.|||.+ .+ +++|+++|+++ |.|.++.+.+
T Consensus 23 ~p~~~l~V~NLp~~~~t----e~~L~~lF~~f--G~V~~v~i~~------------------------------------ 60 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYS----DSAVLKLAEPY--GKIKNYILMR------------------------------------ 60 (112)
T ss_dssp CCCCEEEEESCCCSSCC----SHHHHTTTTTT--SCCSEEEEET------------------------------------
T ss_pred CCCCEEEEeCCCCccCC----HHHHHHHHHhc--CCEEEEEEec------------------------------------
Confidence 56889999999997 76 68899999886 6788776530
Q ss_pred CCCCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccC----CCCce
Q 010216 266 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ----LVDTW 341 (515)
Q Consensus 266 ~~rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~----~~~~~ 341 (515)
..+.|||+|++..+|..|.+.+... ....+
T Consensus 61 ----------------------------------------------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 61 ----------------------------------------------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp ----------------------------------------------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred ----------------------------------------------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 0168999999999999999876532 33467
Q ss_pred eeeeCCCCCcccc
Q 010216 342 TVSDAPESRELIW 354 (515)
Q Consensus 342 ~v~~AP~P~DIiW 354 (515)
.|+.|-...++.+
T Consensus 95 ~V~~a~~~~~~~~ 107 (112)
T 1x4f_A 95 KVDLSEKYKKLVS 107 (112)
T ss_dssp EEEEECSCSSSSC
T ss_pred EEEECcccccccc
Confidence 7777766665543
No 112
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.35 E-value=0.031 Score=44.07 Aligned_cols=38 Identities=24% Similarity=0.242 Sum_probs=29.0
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccCC--CCceeeeeCCCC
Q 010216 312 QLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPES 349 (515)
Q Consensus 312 ~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~AP~P 349 (515)
..+.|||+|.+..+|..|.+.++... ...+.|+.|-++
T Consensus 55 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 55 PRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp TTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 34789999999999999998876543 346777776444
No 113
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=96.35 E-value=0.0089 Score=46.41 Aligned_cols=37 Identities=22% Similarity=0.149 Sum_probs=29.1
Q ss_pred ceEEEEeCCHHHHHHHHHHhccC--CCCceeeeeCCCCC
Q 010216 314 GAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPESR 350 (515)
Q Consensus 314 ~~aFVtF~~~~~a~~a~q~~~~~--~~~~~~v~~AP~P~ 350 (515)
|.|||+|.+..+|..|.+.++.. ....++++.||...
T Consensus 41 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 41 RTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp TEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred cEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 68999999999999999977654 34467788887543
No 114
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=96.33 E-value=0.03 Score=44.47 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=27.7
Q ss_pred ceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010216 190 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 190 ~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
.||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 1 ~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 35 (101)
T 2hvz_A 1 MKVYVGNLGTGAG----KGELERAFSYY--GPLRTVWIARN 35 (101)
T ss_dssp CEEEEECCCSSCS----HHHHHHHHHHH--CCCSEEEEESS
T ss_pred CEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEeeC
Confidence 3799999999876 78899999987 56777765533
No 115
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.28 E-value=0.0088 Score=48.93 Aligned_cols=36 Identities=11% Similarity=0.290 Sum_probs=29.7
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 010216 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (515)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 229 (515)
..+||.|.|||.+++ +++|+++|+++ |.|.++.+.+
T Consensus 24 ~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 59 (114)
T 2cq4_A 24 DARTVFCMQLAARIR----PRDLEDFFSAV--GKVRDVRIIS 59 (114)
T ss_dssp HHTEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEECC
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEeEEEEEe
Confidence 357999999999987 78999999886 6787777653
No 116
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=96.28 E-value=0.0067 Score=52.97 Aligned_cols=100 Identities=8% Similarity=0.143 Sum_probs=67.2
Q ss_pred cceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 010216 189 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTR 268 (515)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~~r 268 (515)
.+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 3 ~~~l~v~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~------------------------------------ 40 (167)
T 2cjk_A 3 SCKMFIGGLNWDTT----EDNLREYFGKY--GTVTDLKIMKDPA------------------------------------ 40 (167)
T ss_dssp GGEEEECSCCTTCC----HHHHHHHHTTT--CCEEEEECCCCTT------------------------------------
T ss_pred CcEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEEECCC------------------------------------
Confidence 68999999999987 79999999986 5787776553210
Q ss_pred CccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCCCCceeeeeCC-
Q 010216 269 PTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLVDTWTVSDAP- 347 (515)
Q Consensus 269 p~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~~~~~~v~~AP- 347 (515)
.....|.|||+|.+..+|..|.+..+.-....+.+..|.
T Consensus 41 ----------------------------------------~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 41 ----------------------------------------TGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIP 80 (167)
T ss_dssp ----------------------------------------TSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCC
T ss_pred ----------------------------------------CCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccc
Confidence 113568999999999999999885322222233344332
Q ss_pred -----CCCcccccccccchHHHHHHHHH
Q 010216 348 -----ESRELIWNNLNIKFFQRQIRQYV 370 (515)
Q Consensus 348 -----~P~DIiW~NL~~~~~~r~~R~~~ 370 (515)
.+..|+=.||..+..+..++.++
T Consensus 81 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F 108 (167)
T 2cjk_A 81 RDEQDKTGKIFVGGIGPDVRPKEFEEFF 108 (167)
T ss_dssp HHHHHHCEEEEEEEECTTCCHHHHHHHH
T ss_pred hhhccCCCeEEECCCCCCCCHHHHHHHH
Confidence 22346667777666666566543
No 117
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=96.27 E-value=0.011 Score=44.99 Aligned_cols=36 Identities=11% Similarity=0.284 Sum_probs=25.6
Q ss_pred cceEEEecCCCCCCCCC--hHHHHHHHHHHhCCCCcceEE
Q 010216 189 QFAVLVRDLPDLPKGQS--RKEQVDSYFKAIYPDTFYRSM 226 (515)
Q Consensus 189 ~~TVlV~~IP~~~~~~~--~~~~l~~~f~~~~p~~v~~v~ 226 (515)
++||.|.|||.+..++. .+++|+++|+++ |.|.++.
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~i~~v~ 38 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDF 38 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhc--CCeEEEE
Confidence 46899999998774210 258899999876 5666654
No 118
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.24 E-value=0.0074 Score=49.51 Aligned_cols=37 Identities=14% Similarity=0.159 Sum_probs=29.7
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCc-ceEEEe
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTF-YRSMVV 228 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v-~~v~i~ 228 (515)
....+||.|.|||.+++ +++|+++|+++ |.| .++.++
T Consensus 12 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--g~v~~~v~i~ 49 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSIT----KMDVLQFLEGI--PVDENAVHVL 49 (114)
T ss_dssp CSCCCEEEEESCCTTSC----HHHHHHHTTTS--CCCSTTEEEC
T ss_pred CCCccEEEEeCcCCcCC----HHHHHHHHHhC--CCcCCeEEEE
Confidence 35679999999999987 78899999886 566 556554
No 119
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.24 E-value=0.0097 Score=48.51 Aligned_cols=35 Identities=14% Similarity=0.289 Sum_probs=28.8
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 010216 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (515)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 229 (515)
..++|.|.|||.+.+ +++|+++|+.+ .|.++.+++
T Consensus 15 ~~~~v~V~nLp~~~t----e~dl~~~F~~~---~v~~v~i~~ 49 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAM----ENDVRDFFHGL---RVDAVHLLK 49 (109)
T ss_dssp HHHEEEEECCCSSCC----HHHHHHHTTTS---CCCEEEECC
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHhccC---CeeEEEEEE
Confidence 468999999999987 79999999875 467777654
No 120
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=96.23 E-value=0.022 Score=51.02 Aligned_cols=39 Identities=18% Similarity=0.194 Sum_probs=32.3
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
....+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 10 ~~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~~ 48 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETT----DESLRSHFEQW--GTLTDCVVMRD 48 (196)
T ss_dssp CGGGGEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEEEc
Confidence 35689999999999886 79999999987 57888776643
No 121
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=96.22 E-value=0.016 Score=47.63 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=25.5
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEE
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSM 226 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~ 226 (515)
...++|.|.|||.+++ +++|+++|+++ |.|.++.
T Consensus 14 r~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~v~~~~ 47 (115)
T 3beg_B 14 RSENRVVVSGLPPSGS----WQDLKDHMREA--GDVCYAD 47 (115)
T ss_dssp ---CCEEEEECCSSCC----TTHHHHHHGGG--SCEEEEE
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEE
Confidence 3568999999999887 68899999886 4666554
No 122
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.20 E-value=0.0079 Score=49.06 Aligned_cols=82 Identities=17% Similarity=0.117 Sum_probs=59.8
Q ss_pred CccceEEEecCCCCCCCCChHHHHH---HHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVD---SYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGK 263 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~---~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~ 263 (515)
...++|.|.|||.+++ +++|+ ++|+++ |.|.++.+..|...
T Consensus 13 ~~~~~l~V~nLp~~~~----~~~l~~~~~~F~~~--G~i~~v~i~~~~~~------------------------------ 56 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLA----DPEVLKRPEYFGKF--GKIHKVVINNSTSY------------------------------ 56 (111)
T ss_dssp CCSSCEEEEEECTTTC----CHHHHHSTTTTTTT--SCEEEEEEECCSSC------------------------------
T ss_pred cCCCEEEEECCCCCCC----HHHHHHHHHHhhcc--CCEEEEEEecCCCc------------------------------
Confidence 5678999999999987 57788 899876 67888877643210
Q ss_pred CCCCCCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccC--CCCce
Q 010216 264 PEGTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTW 341 (515)
Q Consensus 264 ~~~~rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~--~~~~~ 341 (515)
++ ...+.|.|||+|.+..+|..|.+.+... ....+
T Consensus 57 ----------------~~---------------------------~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 57 ----------------AG---------------------------SQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp ----------------CS---------------------------SSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred ----------------Cc---------------------------cCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 00 1135689999999999999999987654 23456
Q ss_pred eeeeCC
Q 010216 342 TVSDAP 347 (515)
Q Consensus 342 ~v~~AP 347 (515)
+|+.|-
T Consensus 94 ~V~~a~ 99 (111)
T 2cpi_A 94 KASLGT 99 (111)
T ss_dssp EEESCC
T ss_pred EEEecc
Confidence 677663
No 123
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=96.19 E-value=0.023 Score=45.19 Aligned_cols=35 Identities=9% Similarity=0.246 Sum_probs=28.2
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEE
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i 227 (515)
+..+||.|.|||.+++ +++|+++|+++ |.|.++.+
T Consensus 25 ~~~~~l~V~nlp~~~~----~~~l~~~f~~~--G~i~~~~~ 59 (101)
T 2la4_A 25 PRVTTAYIGNIPHFAT----EADLIPLFQNF--GFILDFKH 59 (101)
T ss_dssp SSCCEEEEESCCTTCC----HHHHHHHHHTT--SCCSEEEE
T ss_pred CCCCEEEEcCCCcccC----HHHHHHHHHhC--CCEEEEEE
Confidence 5678999999999887 78999999886 55655543
No 124
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.17 E-value=0.016 Score=46.12 Aligned_cols=38 Identities=21% Similarity=0.143 Sum_probs=28.3
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccCC--CCceeeeeCCCC
Q 010216 312 QLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPES 349 (515)
Q Consensus 312 ~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~AP~P 349 (515)
..+.|||+|.+..+|..|.+.++... ...+.|+.|-.+
T Consensus 53 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 53 SKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 92 (102)
T ss_dssp EEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred cCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence 45799999999999999998766542 345667766443
No 125
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=96.16 E-value=0.014 Score=47.24 Aligned_cols=39 Identities=15% Similarity=0.086 Sum_probs=29.2
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCC-CCcceEEEe
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYP-DTFYRSMVV 228 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p-~~v~~v~i~ 228 (515)
....++|.|.|||.+.+ +++|+++|+++.+ ++|.++.+.
T Consensus 8 ~~~~~~l~V~nLp~~~t----e~~l~~~F~~~g~~~~v~~v~i~ 47 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCT----MEDVLNFFSDCRIRNGENGIHFL 47 (107)
T ss_dssp CSSCCEEEEECCCSSCC----SHHHHHHTTTSCBTTTTTTEECC
T ss_pred CCCccEEEEeCCCCCCC----HHHHHHHHHhcCCcCCcceEEEE
Confidence 35688999999999987 6889999987632 235666544
No 126
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=96.16 E-value=0.022 Score=49.98 Aligned_cols=39 Identities=5% Similarity=0.172 Sum_probs=31.4
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
....+||.|.|||.+++ .+.|+++|+++ |.|.++.+..|
T Consensus 69 ~~~~~~l~V~nLp~~~t----~~~L~~~F~~~--G~i~~v~i~~~ 107 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQ----EDEIQEKFCDY--GEIKNIHLNLD 107 (165)
T ss_dssp CC-CEEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHhhcC--CCEEEEEEEec
Confidence 45678999999999886 79999999987 67888877643
No 127
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.14 E-value=0.018 Score=47.02 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=27.8
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccCC--CCceeeeeCC
Q 010216 311 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAP 347 (515)
Q Consensus 311 ~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~AP 347 (515)
+..|.|||+|.+..+|..|.+.++... ...+.|+.|-
T Consensus 65 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 103 (115)
T 2cpx_A 65 RMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 103 (115)
T ss_dssp SSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECC
T ss_pred ccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEcc
Confidence 356899999999999999998776543 3456666653
No 128
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=96.10 E-value=0.024 Score=44.66 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=30.0
Q ss_pred ceEEEEeCCHHHHHHHHHHhccC--CCCceeeeeCCCCCcc
Q 010216 314 GAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPESREL 352 (515)
Q Consensus 314 ~~aFVtF~~~~~a~~a~q~~~~~--~~~~~~v~~AP~P~DI 352 (515)
|.|||+|.+..+|..|.+.++.. ....+.++.|-.+.+.
T Consensus 52 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 92 (97)
T 1nu4_A 52 GQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDI 92 (97)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCCTH
T ss_pred cEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCCcc
Confidence 78999999999999999877654 2345678877666554
No 129
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=96.05 E-value=0.038 Score=52.41 Aligned_cols=97 Identities=18% Similarity=0.168 Sum_probs=75.8
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~ 266 (515)
...+||.|.|||.+++ +++|+++|+.+ |.|.++.+.+
T Consensus 20 ~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~------------------------------------- 56 (261)
T 3sde_A 20 TQRCRLFVGNLPTDIT----EEDFKRLFERY--GEPSEVFINR------------------------------------- 56 (261)
T ss_dssp CGGGEEEEESCCTTCC----HHHHHHHTGGG--CCCSEEEEET-------------------------------------
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHHhc--CCEEEEEEeC-------------------------------------
Confidence 5678999999999987 79999999887 5676665410
Q ss_pred CCCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccC--CCCceeee
Q 010216 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 344 (515)
Q Consensus 267 ~rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~--~~~~~~v~ 344 (515)
..|.|||+|.+..+|..|.+.+... ....+.+.
T Consensus 57 ---------------------------------------------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 57 ---------------------------------------------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp ---------------------------------------------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ---------------------------------------------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 1279999999999999999876544 23467788
Q ss_pred eCCCCCcccccccccchHHHHHHHHHH
Q 010216 345 DAPESRELIWNNLNIKFFQRQIRQYVV 371 (515)
Q Consensus 345 ~AP~P~DIiW~NL~~~~~~r~~R~~~~ 371 (515)
.|.+..-|.=.||..+..+..++.++.
T Consensus 92 ~a~~~~~l~v~nl~~~~t~~~l~~~F~ 118 (261)
T 3sde_A 92 FATHGAALTVKNLSPVVSNELLEQAFS 118 (261)
T ss_dssp ECCCSSEEEEESCCTTCCHHHHHHHHG
T ss_pred ecccCCcccccCCCCCCCHHHHHHHHH
Confidence 888888899999988777777776553
No 130
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=96.04 E-value=0.023 Score=45.74 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=29.0
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccC--CCC-ceeeeeCCCC
Q 010216 312 QLGAALVFFTSRVAAASAAQSLHAQ--LVD-TWTVSDAPES 349 (515)
Q Consensus 312 ~~~~aFVtF~~~~~a~~a~q~~~~~--~~~-~~~v~~AP~P 349 (515)
+.|.|||+|.+..+|..|.+.+... ... .++|+.|-+-
T Consensus 60 ~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 60 TKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDF 100 (105)
T ss_dssp SCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred eeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchH
Confidence 4589999999999999999977654 233 5778877543
No 131
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=96.02 E-value=0.038 Score=44.74 Aligned_cols=35 Identities=11% Similarity=0.194 Sum_probs=27.9
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEE
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSM 226 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~ 226 (515)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.
T Consensus 28 ~~~~~~l~V~nLp~~~t----~~~L~~~F~~~--G~i~~v~ 62 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQ----ESELNEIFGPF--GPMKEVK 62 (108)
T ss_dssp CCSCSEEEECSSCTTCC----HHHHHHHHTTT--SCCCEEE
T ss_pred CCCCCEEEEECCCCCCC----HHHHHHHHHhc--CCEEEEE
Confidence 46689999999999987 78899999876 4565553
No 132
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=96.02 E-value=0.017 Score=45.94 Aligned_cols=36 Identities=14% Similarity=0.026 Sum_probs=27.3
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccCC--CCceeeeeCC
Q 010216 311 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAP 347 (515)
Q Consensus 311 ~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~AP 347 (515)
+..|.|||+|.+..+|..|.+ +.... ...+.|+.|-
T Consensus 56 ~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 56 TNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp TTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 456899999999999999998 65443 3456677663
No 133
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.02 E-value=0.0089 Score=48.02 Aligned_cols=36 Identities=17% Similarity=0.293 Sum_probs=28.6
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 229 (515)
...++|.|.|||.+.+ +++|+++|+++. +.++.+++
T Consensus 13 ~~~~~l~V~nLp~~~t----e~~l~~~F~~~G---~~~v~i~~ 48 (102)
T 1wez_A 13 TTGHCVHMRGLPYRAT----ENDIYNFFSPLN---PMRVHIEI 48 (102)
T ss_dssp SSSCEEEEESCCTTCC----HHHHHHSSCSCC---CSEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHcC---ceEEEEEE
Confidence 5678999999999987 799999998753 33776663
No 134
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.02 E-value=0.02 Score=45.97 Aligned_cols=36 Identities=8% Similarity=0.115 Sum_probs=30.2
Q ss_pred CccceEEEecCCC-CCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 010216 187 PQQFAVLVRDLPD-LPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 187 ~~~~TVlV~~IP~-~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 228 (515)
...++|.|.|||. +.+ +++|+++|+++ |.|.++.+.
T Consensus 13 ~p~~~l~V~nLp~~~~t----e~dL~~lF~~f--G~V~~v~i~ 49 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNL----RYQLLQLVEPF--GVISNHLIL 49 (102)
T ss_dssp CCCCEEEEESCCCSSSH----HHHHHTTTGGG--SCEEEEEEC
T ss_pred CCCCEEEEeCCCCCcCC----HHHHHHHHHhc--CCEEEEEEE
Confidence 4678999999999 776 78999999987 678888654
No 135
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.028 Score=44.25 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=27.2
Q ss_pred CCccceEEEecCCC-CCCCCChHHHHHHHHHHhCCCCcceEEE
Q 010216 186 RPQQFAVLVRDLPD-LPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (515)
Q Consensus 186 ~~~~~TVlV~~IP~-~~~~~~~~~~l~~~f~~~~p~~v~~v~i 227 (515)
.+..+||.|.|||. +.+ +++|+++|+++ |.|.++.+
T Consensus 7 ~~~~~~l~V~nlp~~~~t----~~~l~~~F~~~--G~v~~v~i 43 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVS----KEDLFRIFSPY--GHIMQINI 43 (96)
T ss_dssp --CCEEEEEESSTTSCCC----HHHHHHHHTTT--CCCCEEEE
T ss_pred CCCCCEEEEeCCCcccCC----HHHHHHHHHhc--CCEEEEEE
Confidence 36688999999997 776 78999999886 55665543
No 136
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.99 E-value=0.042 Score=47.25 Aligned_cols=77 Identities=22% Similarity=0.182 Sum_probs=59.0
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 265 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~ 265 (515)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 70 ~~~~~~l~V~nl~~~~t----~~~l~~~F~~~--G~i~~v~i~~~----------------------------------- 108 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGN----KTELERAFGYY--GPLRSVWVARN----------------------------------- 108 (150)
T ss_dssp STTSCEEEEESCCSCCS----CHHHHHHHHHH--SCEEEEEECSS-----------------------------------
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhh--CCEEEEEEeeC-----------------------------------
Confidence 35679999999999987 58899999997 57777665422
Q ss_pred CCCCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC--CCceee
Q 010216 266 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTV 343 (515)
Q Consensus 266 ~~rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v 343 (515)
+.|.|||+|.+..+|..|.+.++... ...++|
T Consensus 109 ----------------------------------------------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 142 (150)
T 2i2y_A 109 ----------------------------------------------PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRV 142 (150)
T ss_dssp ----------------------------------------------SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEE
T ss_pred ----------------------------------------------CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 13689999999999999998776543 345677
Q ss_pred eeCCCC
Q 010216 344 SDAPES 349 (515)
Q Consensus 344 ~~AP~P 349 (515)
+.|-++
T Consensus 143 ~~a~~~ 148 (150)
T 2i2y_A 143 ELSNGE 148 (150)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 776443
No 137
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=95.96 E-value=0.021 Score=48.06 Aligned_cols=38 Identities=8% Similarity=0.151 Sum_probs=29.3
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcce--EEEecC
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYR--SMVVTN 230 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~--v~i~~d 230 (515)
....||.|.|||.+++ +++|+++|+++ |.|.. |.+++|
T Consensus 21 ~~~~~lfV~nL~~~~t----e~~L~~~F~~~--G~v~~~~v~i~~d 60 (131)
T 2m2b_A 21 NANDTIILRNLNPHST----MDSILGALAPY--AVLSSSNVRVIKD 60 (131)
T ss_dssp CCCCEEEECSCCTTCC----SHHHHHHHGGG--CCCCTTTEECCBC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHh--CCcceeeEEEEEc
Confidence 4578999999999987 68899999987 55643 555533
No 138
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=95.88 E-value=0.035 Score=44.79 Aligned_cols=84 Identities=8% Similarity=-0.007 Sum_probs=59.3
Q ss_pred CccceEEEecCC--CCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 010216 187 PQQFAVLVRDLP--DLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKP 264 (515)
Q Consensus 187 ~~~~TVlV~~IP--~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~ 264 (515)
...++|.+.|+. .++.+ +.+++|++.|+++ |.|.++.+.+|...
T Consensus 6 ~~s~~l~l~Nm~~~~~l~d-d~~~dl~~~f~~~--G~V~~v~i~~~~~~------------------------------- 51 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDE-DLEVETKEECEKY--GKVGKCVIFEIPGA------------------------------- 51 (105)
T ss_dssp SCCSEEEEESSSCSCCC----CHHHHHHHGGGG--SCEEEEEEEECSSC-------------------------------
T ss_pred CCCCEEEEEcCCChHHhhH-HHHHHHHHHHHhc--CCEEEEEEecCCCC-------------------------------
Confidence 457899999995 33332 3478899999887 68888887754210
Q ss_pred CCCCCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC--CCcee
Q 010216 265 EGTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWT 342 (515)
Q Consensus 265 ~~~rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~ 342 (515)
..+..|.|||+|.+..+|..|.+.++... ...+.
T Consensus 52 --------------------------------------------~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~ 87 (105)
T 2pe8_A 52 --------------------------------------------PDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVK 87 (105)
T ss_dssp --------------------------------------------CTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred --------------------------------------------CCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEE
Confidence 01245899999999999999999887653 34567
Q ss_pred eeeCCC
Q 010216 343 VSDAPE 348 (515)
Q Consensus 343 v~~AP~ 348 (515)
++.|++
T Consensus 88 v~~a~~ 93 (105)
T 2pe8_A 88 ACFYNL 93 (105)
T ss_dssp EEECCH
T ss_pred EEEcCH
Confidence 777753
No 139
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=95.86 E-value=0.031 Score=48.91 Aligned_cols=37 Identities=3% Similarity=0.132 Sum_probs=30.8
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 229 (515)
...++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 93 ~~~~~l~v~nl~~~~t----~~~l~~~F~~~--G~i~~v~~~~ 129 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCT----ENDIRVMFSSF--GQIEECRILR 129 (175)
T ss_dssp GGGSEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCeEEEcCCCCcCC----HHHHHHHHHhC--CCEEEEEEEE
Confidence 4678999999999987 78999999987 5687777664
No 140
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=95.84 E-value=0.071 Score=42.09 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=28.1
Q ss_pred CCccceEEEecCCC-CCCCCChHHHHHHHHHHhCCCCcceEE
Q 010216 186 RPQQFAVLVRDLPD-LPKGQSRKEQVDSYFKAIYPDTFYRSM 226 (515)
Q Consensus 186 ~~~~~TVlV~~IP~-~~~~~~~~~~l~~~f~~~~p~~v~~v~ 226 (515)
.+..++|.|.|||. +.+ +++|+++|+++ |.|.++.
T Consensus 19 ~~~~~~l~V~nLp~~~~t----~~~L~~~F~~~--G~v~~v~ 54 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVS----KEDLFRIFSPY--GHIMQIN 54 (97)
T ss_dssp CCTTCEEEEESCCSSCCC----HHHHHHHHGGG--SCEEEEE
T ss_pred CCCCCEEEEeCCCcccCC----HHHHHHHHHhc--CCEEEEE
Confidence 46789999999997 776 78999999986 5566554
No 141
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=95.84 E-value=0.031 Score=50.97 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=31.4
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
...++|.|.|||.+++ +++|+++|+++ |.|.++.+.+|
T Consensus 123 ~~~~~l~v~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~~ 160 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLS----DDDIKSVFEAF--GKIKSATLARD 160 (216)
T ss_dssp TTSCEEEEECCCTTCC----HHHHHHHHTTS--SCEEEEEEEEC
T ss_pred CCCcEEEEeCCCCcCC----HHHHHHHHhcc--CCeeEEEEEec
Confidence 4568999999999876 79999999886 67888877654
No 142
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=95.82 E-value=0.031 Score=48.64 Aligned_cols=38 Identities=16% Similarity=0.333 Sum_probs=30.8
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
...++|.|.|+|.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 87 ~~~~~l~v~nl~~~~t----~~~l~~~f~~~--G~i~~~~i~~~ 124 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTIT----DDQLDTIFGKY--GSIVQKNILRD 124 (168)
T ss_dssp TTTCEEEEESCCTTCC----HHHHHHHHTSS--SCEEEEEEEEC
T ss_pred CCCCCEEEeCCCCCCC----HHHHHHhhhcC--CcEEEEEEEEc
Confidence 5678999999999876 79999999876 57777776643
No 143
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=95.78 E-value=0.03 Score=48.44 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=31.6
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
....+++.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 84 ~~~~~~l~v~nl~~~~t----~~~l~~~f~~~--G~i~~~~i~~~ 122 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVD----DETLRNAFKDF--PSYLSGHVMWD 122 (166)
T ss_dssp CTTCEEEEEESCCTTCC----HHHHHHHHTTS--TTEEEEEEEEC
T ss_pred CCCCceEEECCCCCCCC----HHHHHHHHhcc--CCeeEEEEEec
Confidence 35678999999999886 79999999876 67877776643
No 144
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=95.75 E-value=0.069 Score=41.42 Aligned_cols=72 Identities=15% Similarity=0.076 Sum_probs=57.1
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~ 266 (515)
+.+..++|.||+.+.+ ++.|++.|.++ |+|.++++..
T Consensus 5 ~~~~wL~VgNL~~~~t----e~~L~~lF~q~--G~V~~~~l~~------------------------------------- 41 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQID----GPTLRTLCMQH--GPLVSFHPYL------------------------------------- 41 (89)
T ss_dssp CCCCEEEEECCCTTCC----CHHHHHHHHHH--SCEEEEEEET-------------------------------------
T ss_pred CccceEEEeCCCccCC----HHHHHHHHHhh--CCEEEEEEcC-------------------------------------
Confidence 5688999999999987 69999999998 5677765420
Q ss_pred CCCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC--CCceeee
Q 010216 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVS 344 (515)
Q Consensus 267 ~rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~ 344 (515)
+.|.|||.|.++.+|..|.+.+...+ ...++|+
T Consensus 42 ---------------------------------------------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~ 76 (89)
T 2wbr_A 42 ---------------------------------------------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAE 76 (89)
T ss_dssp ---------------------------------------------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred ---------------------------------------------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 24899999999999999999876543 3457777
Q ss_pred eC
Q 010216 345 DA 346 (515)
Q Consensus 345 ~A 346 (515)
.|
T Consensus 77 ~A 78 (89)
T 2wbr_A 77 SP 78 (89)
T ss_dssp CC
T ss_pred EC
Confidence 77
No 145
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=95.73 E-value=0.039 Score=47.93 Aligned_cols=36 Identities=8% Similarity=0.198 Sum_probs=29.3
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 010216 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (515)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 229 (515)
...+|.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 86 ~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~~~i~~ 121 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVR----PKEFEEFFSQW--GTIIDAQLML 121 (167)
T ss_dssp HCEEEEEEEECTTCC----HHHHHHHHHTT--SCCSEEECCC
T ss_pred CCCeEEECCCCCCCC----HHHHHHHHHhC--ccEEEEEEEE
Confidence 367999999999887 78899999986 5777776553
No 146
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.72 E-value=0.03 Score=44.46 Aligned_cols=36 Identities=19% Similarity=0.058 Sum_probs=27.1
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccC--CCCceeeeeCC
Q 010216 312 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAP 347 (515)
Q Consensus 312 ~~~~aFVtF~~~~~a~~a~q~~~~~--~~~~~~v~~AP 347 (515)
..+.|||+|++..+|..|.+.++.. ....++|+.|-
T Consensus 52 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 52 SKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp BCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred EeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 4589999999999999999976543 23456676653
No 147
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=95.70 E-value=0.012 Score=50.34 Aligned_cols=35 Identities=17% Similarity=0.334 Sum_probs=27.6
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 228 (515)
...++|.|.|||.+.+ +++|+++|+++ | +.+|.++
T Consensus 44 ~~~~~lfV~nLp~~~t----e~dL~~~F~~~--G-i~~v~i~ 78 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKAT----ENDIYNFFSPL--N-PVRVHIE 78 (139)
T ss_dssp -CCCCEECCSCCTTCC----HHHHHHHHCSC--C-CSEEECC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--C-CeEEEEE
Confidence 4578999999999987 79999999986 3 4466554
No 148
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=95.68 E-value=0.048 Score=52.18 Aligned_cols=59 Identities=24% Similarity=0.228 Sum_probs=46.6
Q ss_pred CceEEEEeCCHHHHHHHHHHhccC--CCCceeeeeCCCCCcccccccccchHHHHHHHHHH
Q 010216 313 LGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPESRELIWNNLNIKFFQRQIRQYVV 371 (515)
Q Consensus 313 ~~~aFVtF~~~~~a~~a~q~~~~~--~~~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~~~ 371 (515)
.|.|||+|.+..+|..|.+.+... ....+.++.+|...-|+=.||..+..+..++.++.
T Consensus 57 ~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~l~v~nlp~~~t~~~l~~~f~ 117 (284)
T 3smz_A 57 KGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELVR 117 (284)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCSCEEEEESCCTTCCHHHHHHHHG
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCCCEEEEcCCCCcCCHHHHHHHHH
Confidence 369999999999999999876544 23466788888888899999988877776666543
No 149
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=95.66 E-value=0.046 Score=47.30 Aligned_cols=37 Identities=14% Similarity=0.285 Sum_probs=30.5
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 229 (515)
...+++.|.|+|.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 86 ~~~~~l~v~nl~~~~t----~~~l~~~f~~~--G~i~~~~i~~ 122 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMT----QKELEQLFSQY--GRIITSRILV 122 (167)
T ss_dssp GTTCEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCcEEECCCCCcCC----HHHHHHHHHhc--CCEeEEEEEe
Confidence 4578999999999886 78999999987 5777777664
No 150
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=95.63 E-value=0.093 Score=48.54 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=30.1
Q ss_pred CCccceEEEecCCC-CCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 010216 186 RPQQFAVLVRDLPD-LPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 186 ~~~~~TVlV~~IP~-~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 228 (515)
.+..+||.|.|||. +.+ +++|+++|+++ |.|.++.+.
T Consensus 31 ~~~~~~l~V~nLp~~~~t----e~~L~~~F~~~--G~i~~v~i~ 68 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVT----PQSLFILFGVY--GDVQRVKIL 68 (229)
T ss_dssp CCCCSEEEEESCCTTTCC----HHHHHHHHHHH--TCEEEEEEC
T ss_pred CCCCCEEEEeCCCcccCC----HHHHHHHHHhC--CCeEEEEEE
Confidence 35679999999999 776 79999999987 567776654
No 151
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=95.58 E-value=0.023 Score=52.94 Aligned_cols=80 Identities=14% Similarity=0.108 Sum_probs=58.7
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 010216 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (515)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~~ 267 (515)
..++|.|.|||.+++ +++|+++|+++.+..|.++.+.+|-..
T Consensus 67 ~~~~lfVgnL~~~~t----e~~L~~~F~~~G~~~v~~v~i~~d~~t---------------------------------- 108 (229)
T 3q2s_C 67 KRIALYIGNLTWWTT----DEDLTEAVHSLGVNDILEIKFFENRAN---------------------------------- 108 (229)
T ss_dssp --CEEEEESCCTTCC----HHHHHHHHHTTTCCCEEEEEEEECTTT----------------------------------
T ss_pred CccEEEEeCCCCCCC----HHHHHHHHHHHCCcceEEEEEEecCCC----------------------------------
Confidence 567999999999987 799999999873227888887754310
Q ss_pred CCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC--CCceeeee
Q 010216 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSD 345 (515)
Q Consensus 268 rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~ 345 (515)
.+..+.|||+|.+..+|..|.+.+.... ...++|+.
T Consensus 109 ------------------------------------------g~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 109 ------------------------------------------GQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp ------------------------------------------CCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred ------------------------------------------CccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 1234799999999999999998765443 33566776
Q ss_pred CC
Q 010216 346 AP 347 (515)
Q Consensus 346 AP 347 (515)
|-
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 152
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=95.55 E-value=0.016 Score=48.49 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=23.8
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHh
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAI 217 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~ 217 (515)
...++|.|.|||.+.+ +++|+++|+++
T Consensus 40 ~~~~~lfVgnLp~~~t----e~dL~~~F~~~ 66 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCT----KEEIVQFFSGL 66 (126)
T ss_dssp SSCCEEEEECCCTTCC----HHHHHHHTTTS
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHhcC
Confidence 4578999999999987 79999999875
No 153
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.50 E-value=0.014 Score=48.49 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=25.4
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcce
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYR 224 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~ 224 (515)
...++|.|.|||.+.+ +++|+++|+++ |.|.+
T Consensus 23 ~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~v~~ 54 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAE----NKHVIDFFKKL--DIVED 54 (124)
T ss_dssp CCCCEEEEECCCTTCC----HHHHHHHSCSS--CBCTT
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCccc
Confidence 4568999999999987 78999999875 44443
No 154
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=95.46 E-value=0.11 Score=45.39 Aligned_cols=35 Identities=26% Similarity=0.180 Sum_probs=28.0
Q ss_pred CceEEEEeCCHHHHHHHHHHhccCCC----CceeeeeCC
Q 010216 313 LGAALVFFTSRVAAASAAQSLHAQLV----DTWTVSDAP 347 (515)
Q Consensus 313 ~~~aFVtF~~~~~a~~a~q~~~~~~~----~~~~v~~AP 347 (515)
.+.|||+|++..+|..|.+.+....- ..++|+.|-
T Consensus 84 rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 84 QFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 36899999999999999998876543 457777764
No 155
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.41 E-value=0.065 Score=41.72 Aligned_cols=36 Identities=19% Similarity=0.097 Sum_probs=27.1
Q ss_pred CceEEEEeCCHHHHHHHHHHhcc-C--CCCceeeeeCCC
Q 010216 313 LGAALVFFTSRVAAASAAQSLHA-Q--LVDTWTVSDAPE 348 (515)
Q Consensus 313 ~~~aFVtF~~~~~a~~a~q~~~~-~--~~~~~~v~~AP~ 348 (515)
.+.|||+|++..+|..|.+.++. . ....++|+.|-.
T Consensus 44 ~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 44 SGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp TTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred CCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 47899999999999999987765 3 234566766643
No 156
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=95.31 E-value=0.038 Score=48.29 Aligned_cols=38 Identities=16% Similarity=0.356 Sum_probs=31.0
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
...++|.|.|+|.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 92 ~~~~~l~v~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~~ 129 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLN----DDQVKELLTSF--GPLKAFNLVKD 129 (172)
T ss_dssp TTTTCEEEECCCTTCC----HHHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCCCEEEEEcCCCcCC----HHHHHHHHHhc--CCceEEEEEec
Confidence 4478999999999886 79999999986 67877776643
No 157
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=95.28 E-value=0.091 Score=47.14 Aligned_cols=35 Identities=14% Similarity=0.140 Sum_probs=28.1
Q ss_pred ccceEEEecCCC-CCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 010216 188 QQFAVLVRDLPD-LPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 188 ~~~TVlV~~IP~-~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 228 (515)
+.+||.|.|||. +.+ +++|+++|+++ |.|.++.+.
T Consensus 2 ~~~~l~v~nlp~~~~~----~~~l~~~F~~~--G~i~~v~i~ 37 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVT----PQSLFILFGVY--GDVQRVKIL 37 (198)
T ss_dssp CCCEEEEECCCSSSCC----HHHHHHHHHTT--CCCSEEECS
T ss_pred CCcEEEEeCCCcccCC----HHHHHHHHHhc--CCEEEEEEE
Confidence 468999999999 776 79999999986 557766544
No 158
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=95.23 E-value=0.027 Score=50.88 Aligned_cols=36 Identities=6% Similarity=0.203 Sum_probs=30.2
Q ss_pred cceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010216 189 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
.+||.|.|||.+.+ .+.|+++|+++ |.|.++.+.+|
T Consensus 109 ~~~l~V~nLp~~~t----~~~L~~~F~~~--G~v~~v~i~~~ 144 (193)
T 2voo_A 109 NRSVYIKGFPTDAT----LDDIKEWLEDK--GQVLNIQMRRT 144 (193)
T ss_dssp HTEEEEECCCTTCC----HHHHHHHHTTS--CCEEEEEEEEC
T ss_pred cCEEEecCCCCcCC----HHHHHHHHhcC--CCEEEEEEEEC
Confidence 58999999999876 79999999986 67888877743
No 159
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=95.22 E-value=0.1 Score=47.49 Aligned_cols=36 Identities=11% Similarity=0.062 Sum_probs=28.8
Q ss_pred CccceEEEecCC-CCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 010216 187 PQQFAVLVRDLP-DLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 187 ~~~~TVlV~~IP-~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 228 (515)
+...||.|.||| .+++ ++.|++.|+++ |.|.++.+.
T Consensus 2 ~~~~~l~V~nL~~~~~~----~~~L~~~F~~~--G~v~~v~i~ 38 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMN----CDRVFNVFCLY--GNVEKVKFM 38 (205)
T ss_dssp CCCSEEEEECCCTTTCC----HHHHHHHHTTT--SCEEEEEEC
T ss_pred CCCCEEEEeCCCcccCC----HHHHHHHHHhc--CCeEEEEEe
Confidence 457899999999 6766 78999999886 678777654
No 160
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.10 E-value=0.077 Score=41.45 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=26.8
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceE
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRS 225 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v 225 (515)
...++|.|.|||.+.+ +++|+++|+++ |.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t----~~~l~~~F~~~--G~v~~v 38 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVD----SAQLSEYFLAF--GPVASV 38 (94)
T ss_dssp TTCCEEEEECCCTTCC----HHHHHHHGGGT--SCEEEE
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHHhc--CCeEEE
Confidence 4578999999999887 79999999986 556544
No 161
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=95.06 E-value=0.077 Score=54.39 Aligned_cols=85 Identities=13% Similarity=0.087 Sum_probs=61.8
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 010216 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (515)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~~ 267 (515)
...||.|.|||.+++ ++.|.++|+++ |.|..|.++.|..
T Consensus 101 ~~~~lfV~nL~~~~t----e~~L~~~F~~~--G~I~~v~i~~d~~----------------------------------- 139 (437)
T 3pgw_S 101 AFKTLFVARVNYDTT----ESKLRREFEVY--GPIKRIHMVYSKR----------------------------------- 139 (437)
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHHc--CCeeEEEeeccCC-----------------------------------
Confidence 357999999999987 78999999986 6787777664310
Q ss_pred CCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC--CCceeeee
Q 010216 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSD 345 (515)
Q Consensus 268 rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~ 345 (515)
..+..|.|||+|.+..+|..|++.++... ...+.|..
T Consensus 140 -----------------------------------------tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 140 -----------------------------------------SGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred -----------------------------------------CCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 11345899999999999999998876543 33566777
Q ss_pred CCCCCcccc
Q 010216 346 APESRELIW 354 (515)
Q Consensus 346 AP~P~DIiW 354 (515)
|-....=-|
T Consensus 179 a~~~~~~~~ 187 (437)
T 3pgw_S 179 ERGRTVKGW 187 (437)
T ss_pred eCCCCCCCC
Confidence 654333334
No 162
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=94.91 E-value=0.11 Score=49.89 Aligned_cols=100 Identities=24% Similarity=0.234 Sum_probs=71.0
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~ 266 (515)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 39 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~---------------------------------- 78 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYN----QNKVYKYFKHC--GPIIHVDVADSLK---------------------------------- 78 (292)
T ss_dssp ---CEEEEEEECTTCC----HHHHHHHHGGG--SCEEEEEEEECTT----------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEECCC----------------------------------
Confidence 5689999999999987 79999999987 5787777653210
Q ss_pred CCCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccC--CCCceeee
Q 010216 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 344 (515)
Q Consensus 267 ~rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~--~~~~~~v~ 344 (515)
...|.|||+|.+..+|..|.+ +... ....+.+.
T Consensus 79 --------------------------------------------~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 79 --------------------------------------------KNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVS 113 (292)
T ss_dssp --------------------------------------------SSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEE
T ss_pred --------------------------------------------CCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEE
Confidence 124899999999999999985 3322 22345666
Q ss_pred eCCCCCcccccccccchHHHHHHHHHHH
Q 010216 345 DAPESRELIWNNLNIKFFQRQIRQYVVY 372 (515)
Q Consensus 345 ~AP~P~DIiW~NL~~~~~~r~~R~~~~~ 372 (515)
.++ +.-|+=.||.....+..++.++..
T Consensus 114 ~~~-~~~l~v~nlp~~~t~~~l~~~f~~ 140 (292)
T 2ghp_A 114 HLT-ECTLWMTNFPPSYTQRNIRDLLQD 140 (292)
T ss_dssp ECC-SCEEEEECCCTTCCHHHHHHHHHH
T ss_pred ECC-CCEEEEECCCCCCCHHHHHHHHHH
Confidence 663 566777888887777777765543
No 163
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=94.89 E-value=0.07 Score=48.76 Aligned_cols=36 Identities=14% Similarity=0.196 Sum_probs=30.2
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 010216 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (515)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 229 (515)
...+|.|.|||.+++ +++|+++|+++ |.|.++.+.+
T Consensus 102 ~~~~l~v~nl~~~~t----~~~l~~~F~~~--G~i~~~~i~~ 137 (213)
T 4f02_A 102 GVGNIFIKNLDKSID----NKALYDTFSAF--GNILSCKVVC 137 (213)
T ss_dssp CTTEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred ccccceECCcccccH----HHHHHHHHhhc--CCeEEEEeec
Confidence 457899999999987 79999999987 6788887664
No 164
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=94.80 E-value=0.067 Score=47.77 Aligned_cols=38 Identities=11% Similarity=0.215 Sum_probs=31.0
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
...++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 102 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 139 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTE----EHHLRDYFEQY--GKIEVIEIMTD 139 (196)
T ss_dssp -CCSEEEEECCTTTCC----HHHHHHHHTTT--SCEEEEEEEEC
T ss_pred CCcceEEEeCCCCCCC----HHHHHHHHhcC--CCeEEEEEeec
Confidence 4568999999999886 79999999976 67888877644
No 165
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.70 E-value=0.045 Score=42.97 Aligned_cols=41 Identities=24% Similarity=0.252 Sum_probs=35.5
Q ss_pred ceEEEEeCCHHHHHHHHHHhccCC--CCceeeeeCCCCCcccc
Q 010216 314 GAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPESRELIW 354 (515)
Q Consensus 314 ~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~AP~P~DIiW 354 (515)
|.|||+|+++.+|..|.+.+.... ...+++..|+..+|++=
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd~~~ 89 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRELCE 89 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCCCCC
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcceeE
Confidence 999999999999999998877654 34788999999999873
No 166
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=94.70 E-value=0.084 Score=47.19 Aligned_cols=78 Identities=14% Similarity=0.181 Sum_probs=58.8
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~ 266 (515)
...++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 112 ~~~~~l~v~nl~~~~~----~~~l~~~f~~~--G~v~~~~~~~~~~---------------------------------- 151 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLN----DDQVKELLTSF--GPLKAFNLVKDSA---------------------------------- 151 (198)
T ss_dssp CCCCEEEEECCCTTCC----HHHHHHHHHTB--SCEEEEEEEECTT----------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHc--CCccEEEEeecCC----------------------------------
Confidence 4679999999999886 78999999986 5777777664311
Q ss_pred CCCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC--CCceeee
Q 010216 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVS 344 (515)
Q Consensus 267 ~rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~ 344 (515)
...+.|.|||+|.+..+|..|.+.++... ...+.++
T Consensus 152 ------------------------------------------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 189 (198)
T 2yh0_A 152 ------------------------------------------TGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQ 189 (198)
T ss_dssp ------------------------------------------TCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEE
T ss_pred ------------------------------------------CCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 01345899999999999999999776542 3456677
Q ss_pred eC
Q 010216 345 DA 346 (515)
Q Consensus 345 ~A 346 (515)
.|
T Consensus 190 ~a 191 (198)
T 2yh0_A 190 RA 191 (198)
T ss_dssp ES
T ss_pred EC
Confidence 66
No 167
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=94.66 E-value=0.028 Score=47.96 Aligned_cols=36 Identities=22% Similarity=0.174 Sum_probs=27.2
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccCC--CCceeeeeC
Q 010216 311 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDA 346 (515)
Q Consensus 311 ~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~A 346 (515)
+..|.|||+|.+..+|..|.+.++... ...+.|+.|
T Consensus 90 ~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 127 (143)
T 3egn_A 90 RMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFA 127 (143)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEEC
T ss_pred CcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 456899999999999999999776542 334566655
No 168
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=94.62 E-value=0.01 Score=52.35 Aligned_cols=37 Identities=16% Similarity=0.098 Sum_probs=28.8
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccCC--CCceeeeeCC
Q 010216 311 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAP 347 (515)
Q Consensus 311 ~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~AP 347 (515)
+..|.|||+|.+..+|..|.+.++... ...+.|+.|.
T Consensus 134 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 134 KSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred CCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 567899999999999999999876542 3456777763
No 169
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=94.60 E-value=0.078 Score=50.66 Aligned_cols=82 Identities=13% Similarity=0.043 Sum_probs=61.8
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~~~~~ 266 (515)
...++|.|.|||.++.+ +++|+++|+++ |.|.++.+.+|.
T Consensus 182 ~~~~~l~v~nlp~~~~~---~~~l~~~f~~~--G~i~~v~i~~~~----------------------------------- 221 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFND---VDALCRALSAV--HSPTFCQLACGQ----------------------------------- 221 (284)
T ss_dssp TSCSEEEEECCCTTCCC---HHHHHHHTCSS--SCCSEEEEEECS-----------------------------------
T ss_pred CCccEEEEecCCcccCC---HHHHHHHhhCC--CCeEEEEEEECC-----------------------------------
Confidence 46789999999999755 89999999876 678888766321
Q ss_pred CCCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhhhcccCCceEEEEeCCHHHHHHHHHHhccCC--CCceeee
Q 010216 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVS 344 (515)
Q Consensus 267 ~rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~~~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~ 344 (515)
..++.|.|||+|.+..+|..|.+.++... ...+.+.
T Consensus 222 ------------------------------------------~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 222 ------------------------------------------DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp ------------------------------------------SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ------------------------------------------CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 01245899999999999999999876543 3456787
Q ss_pred eCCCCC
Q 010216 345 DAPESR 350 (515)
Q Consensus 345 ~AP~P~ 350 (515)
.|.++.
T Consensus 260 ~a~~~~ 265 (284)
T 3smz_A 260 FCAPGP 265 (284)
T ss_dssp ECCSSS
T ss_pred EecCCC
Confidence 775444
No 170
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=94.11 E-value=0.46 Score=41.10 Aligned_cols=57 Identities=12% Similarity=0.131 Sum_probs=36.5
Q ss_pred CceEEEEeCCHHHHHHHHHHhccC--CCCceeeeeCC------CCCcccccccccchHHHHHHHHH
Q 010216 313 LGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAP------ESRELIWNNLNIKFFQRQIRQYV 370 (515)
Q Consensus 313 ~~~aFVtF~~~~~a~~a~q~~~~~--~~~~~~v~~AP------~P~DIiW~NL~~~~~~r~~R~~~ 370 (515)
.|.|||+|.+..+|..|. .+... ....+.++.+. .+.-|.=.||..+..+..++.++
T Consensus 51 ~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f 115 (172)
T 2g4b_A 51 KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELL 115 (172)
T ss_dssp TTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHH
Confidence 589999999999999998 44332 12234444332 23556667777766666666544
No 171
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=93.62 E-value=0.21 Score=46.52 Aligned_cols=40 Identities=10% Similarity=0.130 Sum_probs=30.3
Q ss_pred CccceEEEecCCCCCCCC-----ChHHHHHHHHHHhCCCCcceEEEe
Q 010216 187 PQQFAVLVRDLPDLPKGQ-----SRKEQVDSYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~-----~~~~~l~~~f~~~~p~~v~~v~i~ 228 (515)
...+||.|.|||.++.+. ..++.|+++|+++ |.|.+|.++
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f--G~I~~v~v~ 176 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL--GDIDRIRYV 176 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT--SCEEEEEEE
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHcc--CCEEEEEEE
Confidence 567899999999886310 0278999999987 678877665
No 172
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=93.60 E-value=0.23 Score=45.15 Aligned_cols=36 Identities=8% Similarity=-0.074 Sum_probs=28.4
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCc--ceEEEe
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTF--YRSMVV 228 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v--~~v~i~ 228 (515)
+..+||.|.|||.+.+ +++|+++|+++ |.| .++.+.
T Consensus 121 ~p~~~l~v~NLp~~~t----~~~L~~~F~~~--G~v~~~~v~~~ 158 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVT----EENFFEICDEL--GVKRPTSVKVF 158 (205)
T ss_dssp CCCSEEEEEEECTTCC----HHHHHHHHHHH--TCCCCSEEEEC
T ss_pred CCcceEEEeCCCCCCC----HHHHHHHHHhc--CCcceEEEEEE
Confidence 5578999999999886 79999999997 455 555433
No 173
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=93.60 E-value=0.33 Score=46.14 Aligned_cols=36 Identities=14% Similarity=0.330 Sum_probs=26.5
Q ss_pred CccceEEEecCCCCCCCCChHHHHH----HHHHHhCCCCcceEEEe
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVD----SYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~----~~f~~~~p~~v~~v~i~ 228 (515)
...+||.|.|||.+++ +++|+ ++|+++ |.|.++.+.
T Consensus 7 ~~~~~l~V~nlp~~~~----~~~l~~~L~~~F~~~--G~i~~v~~~ 46 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIK----KDELKKSLYAIFSQF--GQILDILVS 46 (282)
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHHHhcc--CCeEEEEEc
Confidence 5689999999999987 46655 777765 567666543
No 174
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.60 E-value=0.34 Score=39.51 Aligned_cols=34 Identities=9% Similarity=0.013 Sum_probs=27.2
Q ss_pred CccceEEE--ecCCCCCCCCChHHHHHHHHHHhCCCCcceEE
Q 010216 187 PQQFAVLV--RDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSM 226 (515)
Q Consensus 187 ~~~~TVlV--~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~ 226 (515)
...+++.| -|||.+.+ +++|+++|+++ |.|.++.
T Consensus 23 ~pt~~L~V~Ng~L~~~~t----e~~L~~~F~~f--G~v~~v~ 58 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVS----RNQLLPVLEKC--GLVDALL 58 (114)
T ss_dssp SCCSEEEEETCTGGGTCC----HHHHHHHHHHH--SCEEEEE
T ss_pred CCCCEEEEECCCCCCCCC----HHHHHHHHHhc--CCeEEEE
Confidence 45688999 55999886 79999999998 5676664
No 175
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=93.59 E-value=0.2 Score=47.36 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=30.9
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010216 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
...+|.|.|+|.+.+ ++.|+++|+.+ |.|.++.+.+|
T Consensus 95 ~~~~l~v~nl~~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 131 (261)
T 3sde_A 95 HGAALTVKNLSPVVS----NELLEQAFSQF--GPVEKAVVVVD 131 (261)
T ss_dssp CSSEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEEE
T ss_pred cCCcccccCCCCCCC----HHHHHHHHHhc--CCeEEEEeeeC
Confidence 467999999999886 79999999986 67888877754
No 176
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=93.55 E-value=0.21 Score=39.95 Aligned_cols=58 Identities=17% Similarity=0.179 Sum_probs=38.7
Q ss_pred HHHHHhHHHHHHHHH-hhhhc-----------ccCCceEEEEeCCHHHHHHHHHHhccCC--CCceeeeeCC
Q 010216 290 NEKIKEIIPKLEAEQ-KITLK-----------EKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAP 347 (515)
Q Consensus 290 ~~~i~~l~~~I~~~r-~~~~~-----------~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~AP 347 (515)
++..+++.+++.++= ++.++ .++.|.|||+|++..+|..|.+.++... ...+.++.+|
T Consensus 33 ~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 33 QEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSP 104 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEECC
T ss_pred HHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEcC
Confidence 344455666666655 44321 1347899999999999999999876543 3345666665
No 177
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=93.22 E-value=0.53 Score=41.80 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=22.7
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHh
Q 010216 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAI 217 (515)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~ 217 (515)
.++||.|.|||.+.+ +++|+++|+++
T Consensus 3 ~~~~l~V~nLp~~~t----e~~l~~~F~~~ 28 (198)
T 2yh0_A 3 MARRLYVGNIPFGIT----EEAMMDFFNAQ 28 (198)
T ss_dssp -CCEEEEESCCTTCC----HHHHHHHHHHH
T ss_pred ceeEEEEcCCCCCCC----HHHHHHHHHHH
Confidence 578999999999987 78999999886
No 178
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.00 E-value=0.4 Score=38.72 Aligned_cols=65 Identities=18% Similarity=0.054 Sum_probs=44.2
Q ss_pred HHHhHHHHHHHHHhhhh--------cccCCceEEEEeCCHHHHHHHHHHhccC--CCCceeeeeCCCCCcccccc
Q 010216 292 KIKEIIPKLEAEQKITL--------KEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPESRELIWNN 356 (515)
Q Consensus 292 ~i~~l~~~I~~~r~~~~--------~~~~~~~aFVtF~~~~~a~~a~q~~~~~--~~~~~~v~~AP~P~DIiW~N 356 (515)
+.+++++++.++=++.+ ...+.|.|||+|++..+|..|.+.++.. ....+.++.|.+..|.-++.
T Consensus 35 ~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~ 109 (112)
T 2dit_A 35 VLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQSGP 109 (112)
T ss_dssp HHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCCSSCCC
T ss_pred HHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCcccCC
Confidence 44556666665444331 1235799999999999999999887654 34467788887666665544
No 179
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.89 E-value=0.16 Score=40.81 Aligned_cols=39 Identities=13% Similarity=0.061 Sum_probs=33.8
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
.+...+|.|.|||.+++ +++|+++|+++ |+|.++.+.+|
T Consensus 13 ~~~~~~LfV~nLp~~vt----e~dL~~lF~~f--G~V~~v~i~~~ 51 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVT----EGEVISLGLPF--GKVTNLLMLKG 51 (105)
T ss_dssp CCCCCEEEECSCCTTSC----HHHHHHHHHHH--CCEEEEEEETT
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEcC
Confidence 36789999999999986 79999999998 78999998754
No 180
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=92.79 E-value=0.75 Score=38.04 Aligned_cols=37 Identities=30% Similarity=0.332 Sum_probs=29.1
Q ss_pred c-eEEEEeCCHHHHHHHHHHhccCCC----CceeeeeCCCCC
Q 010216 314 G-AALVFFTSRVAAASAAQSLHAQLV----DTWTVSDAPESR 350 (515)
Q Consensus 314 ~-~aFVtF~~~~~a~~a~q~~~~~~~----~~~~v~~AP~P~ 350 (515)
| .|||+|.+..+|..|.+.+....- ..++|+.|-.++
T Consensus 62 Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 62 GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 5 599999999999999998876643 357888875444
No 181
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=92.78 E-value=0.49 Score=42.18 Aligned_cols=35 Identities=11% Similarity=0.201 Sum_probs=28.9
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCC-CcceEEE
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPD-TFYRSMV 227 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~-~v~~v~i 227 (515)
+..+||.|.|+|.+.+ +++|+++|+++ | .|.++.+
T Consensus 118 ~~~~~l~v~nl~~~~~----~~~l~~~f~~~--G~~v~~v~i 153 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVS----EEDLKVLFSSN--GGVVKGFKF 153 (198)
T ss_dssp CCCCEEEECCCCTTCC----HHHHHHHHHHT--TSCCCEEEE
T ss_pred CCccEEEEeCCCCCCC----HHHHHHHHHHc--CCCceEEEE
Confidence 5589999999999876 79999999987 5 6766654
No 182
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.61 E-value=0.2 Score=39.39 Aligned_cols=42 Identities=19% Similarity=0.220 Sum_probs=35.4
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCc
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~ 231 (515)
....+||.|.|||.+++ +++|+++|+++.||.|.++.+.++.
T Consensus 12 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~g~g~v~~~~~~~g~ 53 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTS----EEMIEKEFNNIKPGAVERVKKIRDY 53 (99)
T ss_dssp SSCCCEEEEESCCTTCC----HHHHHHHHHTTSTTCEEEEEECSSE
T ss_pred cCCcCEEEEeCCCCCCC----HHHHHHHHHhcCCcceEEEEEeCCe
Confidence 45678999999999976 7999999999888889888776543
No 183
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=92.60 E-value=0.44 Score=45.46 Aligned_cols=36 Identities=6% Similarity=0.159 Sum_probs=29.4
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCC-CcceEEEe
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPD-TFYRSMVV 228 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~-~v~~v~i~ 228 (515)
...++|.|.|||.+.+ +++|+++|+++ | .|.++.+.
T Consensus 115 ~~~~~l~v~nlp~~~t----~~~l~~~f~~~--G~~i~~v~i~ 151 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYT----QRNIRDLLQDI--NVVALSIRLP 151 (292)
T ss_dssp CCSCEEEEECCCTTCC----HHHHHHHHHHT--TCCCCEEECC
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHHHh--CCCeEEEEEE
Confidence 3578999999999986 78999999986 5 67776554
No 184
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=92.51 E-value=0.1 Score=40.42 Aligned_cols=38 Identities=11% Similarity=0.141 Sum_probs=31.5
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 229 (515)
.++.+|+.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 8 ~~~~~~l~V~~Lp~~~t----e~~L~~~F~~~--G~i~~v~i~~ 45 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMT----AEELQQFFCQY--GEVVDVFIPK 45 (89)
T ss_dssp ---CCEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEECCS
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHhcc--CCEEEEEEee
Confidence 46789999999999987 79999999987 6799988876
No 185
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=92.32 E-value=0.43 Score=39.88 Aligned_cols=35 Identities=26% Similarity=0.232 Sum_probs=27.6
Q ss_pred eEEEEeCCHHHHHHHHHHhccCCC----CceeeeeCCCC
Q 010216 315 AALVFFTSRVAAASAAQSLHAQLV----DTWTVSDAPES 349 (515)
Q Consensus 315 ~aFVtF~~~~~a~~a~q~~~~~~~----~~~~v~~AP~P 349 (515)
.|||+|.+..+|..|.+.+....- ..++++.|..+
T Consensus 68 qAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 68 QALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred EEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 599999999999999998876532 45778877544
No 186
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.04 E-value=0.24 Score=37.55 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=32.3
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 229 (515)
....+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 9 ~~~~~~l~V~~l~~~~t----~~~l~~~f~~~--G~i~~~~~~~ 46 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTIT----ETDLRNHFYQF--GEIRTITVVQ 46 (85)
T ss_dssp CSSCCCEEEECCTTTSC----HHHHHHHHHTT--SCEEEEEEEG
T ss_pred CCCccEEEEcCCCCCCC----HHHHHHHHHhC--CCEeEEEEEC
Confidence 46678999999999876 79999999987 5688888774
No 187
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.03 E-value=0.13 Score=39.44 Aligned_cols=38 Identities=8% Similarity=0.148 Sum_probs=31.9
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
...+||.|.|||.+++ +++|+++|+++ |.|.++.+.+|
T Consensus 3 ~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~~ 40 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMT----EDELREFFSQY--GDVMDVFIPKP 40 (88)
T ss_dssp SCCCEEEEESCCSSSC----HHHHHHHSTTT--SCCCEEECCSS
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHHc--CCeeEEEEecC
Confidence 4578999999999987 79999999987 67888887753
No 188
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=91.59 E-value=0.86 Score=41.82 Aligned_cols=36 Identities=11% Similarity=0.196 Sum_probs=29.0
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCC-CcceEEEe
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPD-TFYRSMVV 228 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~-~v~~v~i~ 228 (515)
+..+||.|.|||.+.+ +++|+++|+++ | .|.++.+.
T Consensus 149 ~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~~i~~v~i~ 185 (229)
T 2adc_A 149 PPSATLHLSNIPPSVS----EEDLKVLFSSN--GGVVKGFKFF 185 (229)
T ss_dssp CSCSEEEEECCCTTCC----HHHHHHHHHTT--SCCEEEEEEC
T ss_pred CCCCEEEEeCCCccCC----HHHHHHHHHHc--CCCeeEEEEE
Confidence 4579999999999876 79999999987 5 66666543
No 189
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.38 E-value=0.23 Score=40.90 Aligned_cols=39 Identities=13% Similarity=0.061 Sum_probs=33.3
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
.+..++|.|.|||.+.+ +++|+++|+++ |.|.++.+..|
T Consensus 28 ~~ps~~LfVgNLp~~vt----e~dL~~lF~~f--G~V~~v~i~~~ 66 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVT----EGEVISLGLPF--GKVTNLLMLKG 66 (119)
T ss_dssp SSCCSEEEEESCCTTCC----HHHHHHHHTTT--SCCCEEEEEGG
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEeCC
Confidence 45689999999999976 79999999986 78999988753
No 190
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=90.98 E-value=0.35 Score=39.45 Aligned_cols=56 Identities=25% Similarity=0.149 Sum_probs=38.1
Q ss_pred HHHhHHHHHHHHHhhhh--------cccCCceEEEEeCCHHHHHHHHHHhccCC--CCceeeeeCC
Q 010216 292 KIKEIIPKLEAEQKITL--------KEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAP 347 (515)
Q Consensus 292 ~i~~l~~~I~~~r~~~~--------~~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~AP 347 (515)
..+++++++.++=++.+ +....|.|||+|.+..+|..|.+.++... ...+.++.+|
T Consensus 26 ~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 26 WDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp HHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 34567777776655542 12346999999999999999999887542 3345555554
No 191
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=90.92 E-value=0.22 Score=39.29 Aligned_cols=39 Identities=13% Similarity=0.225 Sum_probs=32.8
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
....+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 6 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 44 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMD----ETEIRSFFARY--GSVKEVKIITD 44 (102)
T ss_dssp EEEEEEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCeEEEEEEEC
Confidence 35678999999999887 79999999987 67888887754
No 192
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.27 E-value=0.24 Score=39.42 Aligned_cols=39 Identities=10% Similarity=0.111 Sum_probs=32.5
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 230 (515)
.+..++|.|.|||.+.+ +++|+++|+++ |.|.++.+..+
T Consensus 12 ~~p~~~l~V~nLp~~~t----e~~L~~~F~~f--G~v~~v~i~~~ 50 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVT----ETEVIALGLPF--GKVTNILMLKG 50 (101)
T ss_dssp SSCCSEEEEESCCTTCC----HHHHHHTTTTT--SCEEEEEEETT
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEECC
Confidence 35678999999999886 78999999986 68888877653
No 193
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=89.81 E-value=0.78 Score=36.64 Aligned_cols=55 Identities=20% Similarity=0.100 Sum_probs=37.0
Q ss_pred HHhHHHHHHHHHhhhhc--------------ccCCceEEEEeCCHHHHHHHHHHhccCC--CCceeeeeCC
Q 010216 293 IKEIIPKLEAEQKITLK--------------EKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAP 347 (515)
Q Consensus 293 i~~l~~~I~~~r~~~~~--------------~~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~AP 347 (515)
.++++++++++-++.+. .+..|.|||+|++..+|..|.+.++... ...++++.+|
T Consensus 25 ~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 25 YEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 45566666665554321 1346899999999999999999887653 3345566554
No 194
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.03 E-value=0.64 Score=36.86 Aligned_cols=37 Identities=27% Similarity=0.188 Sum_probs=27.9
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccCCCCceeeeeCC
Q 010216 311 KQLGAALVFFTSRVAAASAAQSLHAQLVDTWTVSDAP 347 (515)
Q Consensus 311 ~~~~~aFVtF~~~~~a~~a~q~~~~~~~~~~~v~~AP 347 (515)
+..|.|||+|.+..+|..|.+.........++|+.|-
T Consensus 52 ~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a~ 88 (100)
T 2d9o_A 52 KKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWLE 88 (100)
T ss_dssp SSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECSS
T ss_pred CCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEcc
Confidence 4578999999999999999987544334456676663
No 195
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=85.25 E-value=1.4 Score=33.20 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=31.2
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHh----C----CC-CcceEEEecC
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAI----Y----PD-TFYRSMVVTN 230 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~----~----p~-~v~~v~i~~d 230 (515)
...+||.|.|||.+.+ +++|+++|+++ . |+ .|.++.+.++
T Consensus 4 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~ 52 (87)
T 2hzc_A 4 GSARRLYVGNIPFGIT----EEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD 52 (87)
T ss_dssp GGGGEEEEESCCTTCC----HHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHHhhhcccccCCCCcceEEEecCC
Confidence 4578999999999886 79999999987 3 11 6777777643
No 196
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.62 E-value=1.4 Score=34.19 Aligned_cols=38 Identities=18% Similarity=0.112 Sum_probs=28.1
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccC--CCCceeeeeCCC
Q 010216 311 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPE 348 (515)
Q Consensus 311 ~~~~~aFVtF~~~~~a~~a~q~~~~~--~~~~~~v~~AP~ 348 (515)
+..+.|||+|++..+|..|.+.++.. ....+.|+.|-.
T Consensus 47 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 47 PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 35689999999999999999876543 234566766643
No 197
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=83.50 E-value=1.2 Score=34.45 Aligned_cols=37 Identities=16% Similarity=0.091 Sum_probs=28.3
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccC--CCCceeeeeCCC
Q 010216 312 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPE 348 (515)
Q Consensus 312 ~~~~aFVtF~~~~~a~~a~q~~~~~--~~~~~~v~~AP~ 348 (515)
..|.|||+|.+..+|..|.+.++.. ....+.|+.|.+
T Consensus 52 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 52 SKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp EEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 4589999999999999999976643 234567777733
No 198
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=81.10 E-value=1.5 Score=35.85 Aligned_cols=35 Identities=14% Similarity=0.041 Sum_probs=27.5
Q ss_pred ceEEEEeCCHHHHHHHHHHhccCC--CCceeeeeCCC
Q 010216 314 GAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPE 348 (515)
Q Consensus 314 ~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~AP~ 348 (515)
|.|||+|.+..+|..|.+.++... ...+++..+|+
T Consensus 72 G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 72 VKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred EEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCh
Confidence 789999999999999999887653 33556666654
No 199
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.27 E-value=2.1 Score=33.29 Aligned_cols=35 Identities=26% Similarity=0.214 Sum_probs=26.8
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccC--CCCceeeeeC
Q 010216 312 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDA 346 (515)
Q Consensus 312 ~~~~aFVtF~~~~~a~~a~q~~~~~--~~~~~~v~~A 346 (515)
..+.|||+|++..+|..|.+.++.. ....+.|+.|
T Consensus 50 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 50 IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 4689999999999999999976544 2345666665
No 200
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.89 E-value=1.2 Score=34.82 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=26.9
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceE
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRS 225 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v 225 (515)
|++.++.|.|||.+.+.++.++.|++.|+++ .|+|.+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~y-GG~Vl~V 44 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNC-GGKVLSI 44 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTT-TCCEEEC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHc-CCeeEEE
Confidence 3444488999999988544455677899886 3477765
No 201
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=78.78 E-value=2.5 Score=35.17 Aligned_cols=37 Identities=11% Similarity=0.154 Sum_probs=31.3
Q ss_pred ceEEEecC----CCCCCCCChHHHHHHHHHHhCCCCcceEEEecCch
Q 010216 190 FAVLVRDL----PDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNK 232 (515)
Q Consensus 190 ~TVlV~~I----P~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~ 232 (515)
..|.|.|+ |..+. ++.|++||+++ |+|.++.+..|-.
T Consensus 3 ~kI~VgnL~~~~~~~tt----e~~Lk~~Fs~f--GeV~~~~li~Dp~ 43 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQ----DISIKNYFKKY--GEISHFEAFNDPN 43 (136)
T ss_dssp CEEEEEESSSSCCCCCC----HHHHHHHHHTT--SCCSEEEEEECTT
T ss_pred cEEEEeCCCCCCCCCCC----HHHHHHHHHhc--CCeEEEEEEecCC
Confidence 46899999 98887 79999999986 6898888887753
No 202
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=78.48 E-value=3.2 Score=33.84 Aligned_cols=38 Identities=18% Similarity=0.122 Sum_probs=28.3
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccCC--CCceeeeeCCC
Q 010216 311 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPE 348 (515)
Q Consensus 311 ~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~AP~ 348 (515)
+..|.|||+|++..+|..|.+.+.... ...+.|+.|-.
T Consensus 71 ~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 71 PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 356899999999999999998766543 34566766643
No 203
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.86 E-value=2.3 Score=31.85 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=19.7
Q ss_pred CCceEEEEeCCHHHHHHHHHHh
Q 010216 312 QLGAALVFFTSRVAAASAAQSL 333 (515)
Q Consensus 312 ~~~~aFVtF~~~~~a~~a~q~~ 333 (515)
..|.|||+|.+..+|..|.+.+
T Consensus 47 ~kg~afV~f~~~~~A~~a~~~l 68 (85)
T 2ytc_A 47 RQQCAFIQFATRQAAEVAAEKS 68 (85)
T ss_dssp GGTEEEEEESSHHHHHHHHHTT
T ss_pred CCCEEEEEECCHHHHHHHHHHh
Confidence 3589999999999999999876
No 204
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.70 E-value=1.2 Score=33.88 Aligned_cols=38 Identities=18% Similarity=-0.022 Sum_probs=24.0
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccCCCCceeeeeCCCC
Q 010216 312 QLGAALVFFTSRVAAASAAQSLHAQLVDTWTVSDAPES 349 (515)
Q Consensus 312 ~~~~aFVtF~~~~~a~~a~q~~~~~~~~~~~v~~AP~P 349 (515)
..|.|||+|++..+|..+......-+...+.+..|..+
T Consensus 41 ~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 41 FRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEPK 78 (88)
T ss_dssp CCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCCC
T ss_pred CCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCCC
Confidence 56899999999999975433211123345566665433
No 205
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.68 E-value=2.8 Score=33.14 Aligned_cols=37 Identities=24% Similarity=0.194 Sum_probs=29.4
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHH---hCCCCcceEEE
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKA---IYPDTFYRSMV 227 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~---~~p~~v~~v~i 227 (515)
....+|.|+|+|.+.. ++.|+-|||+ -..|.|.++..
T Consensus 6 ~~~~~I~V~~lPp~~~----~e~L~LYFEn~rrsGGG~V~~v~~ 45 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVP----DELLTLYFENRRRSGGGPVLSWQR 45 (104)
T ss_dssp CCCCEEEEESCCTTSC----HHHHHHHHHCTTTTCCCCEEEEEE
T ss_pred cCccEEEEECCCCCCC----hhHheEEEeCCCcCCCceeeEEEE
Confidence 3467999999999875 7899999998 35667877754
No 206
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.47 E-value=2.9 Score=32.96 Aligned_cols=35 Identities=11% Similarity=0.012 Sum_probs=26.0
Q ss_pred CceEEEEeCCHHHHHHHHHHhccC----CCCceeeeeCC
Q 010216 313 LGAALVFFTSRVAAASAAQSLHAQ----LVDTWTVSDAP 347 (515)
Q Consensus 313 ~~~aFVtF~~~~~a~~a~q~~~~~----~~~~~~v~~AP 347 (515)
.|.|||+|++..+|..|.+.+... ....+.|+.|-
T Consensus 51 kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 51 KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 589999999999999998865422 23356676664
No 207
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=76.79 E-value=0.61 Score=37.72 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=25.7
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcce
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYR 224 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~ 224 (515)
...++|.|.|||.+.+ +++|+++|+++ |.|.+
T Consensus 5 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~ 36 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVT----IESVADYFKQI--GIIKT 36 (116)
Confidence 5578999999999887 68899999887 44544
No 208
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=72.80 E-value=2.3 Score=32.48 Aligned_cols=36 Identities=19% Similarity=-0.013 Sum_probs=22.6
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccCCCCceeeeeCC
Q 010216 312 QLGAALVFFTSRVAAASAAQSLHAQLVDTWTVSDAP 347 (515)
Q Consensus 312 ~~~~aFVtF~~~~~a~~a~q~~~~~~~~~~~v~~AP 347 (515)
..|.|||+|++..+|..+...-..-+.....+..|-
T Consensus 47 srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 47 FRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp CCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEECC
T ss_pred CCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEEcC
Confidence 568999999999998843222111223455566653
No 209
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=72.45 E-value=3.7 Score=38.64 Aligned_cols=36 Identities=17% Similarity=0.373 Sum_probs=30.9
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 228 (515)
+..+||.|.|||.+.+ +++|+++|+++ |.|.++.+.
T Consensus 205 ~~~~~l~v~nl~~~~~----~~~l~~~F~~~--G~i~~v~~~ 240 (282)
T 3pgw_A 205 PPNHILFLTNLPEETN----ELMLSMLFNQF--PGFKEVRLV 240 (282)
T ss_pred CCCCEEEEeCCCCcCC----HHHHHHHHHhc--CCeEEEEEe
Confidence 5678999999999876 79999999986 678888776
No 210
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.93 E-value=3.7 Score=33.51 Aligned_cols=35 Identities=9% Similarity=-0.016 Sum_probs=26.0
Q ss_pred CceEEEEeCCHHHHHHHHHHhccC----CCCceeeeeCC
Q 010216 313 LGAALVFFTSRVAAASAAQSLHAQ----LVDTWTVSDAP 347 (515)
Q Consensus 313 ~~~aFVtF~~~~~a~~a~q~~~~~----~~~~~~v~~AP 347 (515)
.|.|||+|++..+|..|.+.+... ....+.|+.|-
T Consensus 67 kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 105 (119)
T 2ad9_A 67 KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105 (119)
T ss_dssp GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence 489999999999999998866431 23456676663
No 211
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=70.44 E-value=6.1 Score=33.85 Aligned_cols=60 Identities=15% Similarity=0.181 Sum_probs=40.4
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccC--CCCceeeeeCCC--------CCcccccccccchHHHHHHHHHH
Q 010216 311 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPE--------SRELIWNNLNIKFFQRQIRQYVV 371 (515)
Q Consensus 311 ~~~~~aFVtF~~~~~a~~a~q~~~~~--~~~~~~v~~AP~--------P~DIiW~NL~~~~~~r~~R~~~~ 371 (515)
+..|.|||+|.+..+|..|.+ +... ....+.++.|.. ..-|.=.||..+..+..++.++.
T Consensus 52 ~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~ 121 (175)
T 1fje_B 52 TNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFE 121 (175)
T ss_dssp TTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCT
T ss_pred ccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHH
Confidence 467899999999999999996 4432 233455655542 23477777777666666665543
No 212
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=65.37 E-value=4.2 Score=33.09 Aligned_cols=43 Identities=9% Similarity=0.214 Sum_probs=33.9
Q ss_pred CccceEEEecC--CCCCCCCChHHHHHHHHHHhCCCCcceEEEecCch
Q 010216 187 PQQFAVLVRDL--PDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNK 232 (515)
Q Consensus 187 ~~~~TVlV~~I--P~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~ 232 (515)
+..++|.++|+ |.++.+ +.+++|++.|+++ |.|.+|.++.|..
T Consensus 18 ~ps~vl~L~Nm~~~~el~d-dleedl~eef~k~--G~V~~v~I~~~~~ 62 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDD-DLEGEVTEECGKF--GAVNRVIIYQEKQ 62 (118)
T ss_dssp HSCCEEEEESCSCGGGCCT-THHHHHHHHHTTT--SCEEEEEEEEEEE
T ss_pred CCCCEEEEECCCCHHHHHH-HHHHHHHHHHhcc--CCEeEEEEeecCC
Confidence 35899999998 555443 5789999999986 7899999988753
No 213
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=64.79 E-value=4.3 Score=30.34 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=19.5
Q ss_pred CCceEEEEeCCHHHHHHHHHHhcc
Q 010216 312 QLGAALVFFTSRVAAASAAQSLHA 335 (515)
Q Consensus 312 ~~~~aFVtF~~~~~a~~a~q~~~~ 335 (515)
..|.|||+|++..+|..|. .++.
T Consensus 52 ~kg~afV~f~~~~~a~~A~-~l~g 74 (87)
T 2hzc_A 52 DKNFAFLEFRSVDETTQAM-AFDG 74 (87)
T ss_dssp SSSEEEEEESSHHHHHHHG-GGTT
T ss_pred CCcEEEEEcCCHHHHHHHH-hcCC
Confidence 3799999999999999998 5543
No 214
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.80 E-value=5.2 Score=31.84 Aligned_cols=35 Identities=9% Similarity=-0.016 Sum_probs=25.6
Q ss_pred CceEEEEeCCHHHHHHHHHHhccC----CCCceeeeeCC
Q 010216 313 LGAALVFFTSRVAAASAAQSLHAQ----LVDTWTVSDAP 347 (515)
Q Consensus 313 ~~~aFVtF~~~~~a~~a~q~~~~~----~~~~~~v~~AP 347 (515)
.|.|||+|++..+|..|.+.+... ....+.|+.|.
T Consensus 52 kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 52 KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 589999999999999999865432 23345566653
No 215
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=60.78 E-value=5.1 Score=30.63 Aligned_cols=28 Identities=11% Similarity=0.162 Sum_probs=24.3
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHh
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAI 217 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~ 217 (515)
....+||.|.|||.+.+ +++|+++|+++
T Consensus 13 ~~~~~~l~V~nL~~~~t----~~~l~~~F~~~ 40 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNIT----EDELKEVFEDA 40 (96)
T ss_dssp TTGGGEEEEESCCSSCC----HHHHHHHHCSE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHhhC
Confidence 35679999999999987 78999999886
No 216
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=63.42 E-value=2 Score=34.55 Aligned_cols=36 Identities=28% Similarity=0.172 Sum_probs=26.0
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccCC--CCceeeeeC
Q 010216 311 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDA 346 (515)
Q Consensus 311 ~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~A 346 (515)
+..|.|||+|.+..+|..|.+.+.... ...++|+.|
T Consensus 55 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (116)
T 2lcw_A 55 KLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 92 (116)
Confidence 457899999999999999988665432 234555554
No 217
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=53.18 E-value=11 Score=29.60 Aligned_cols=44 Identities=7% Similarity=-0.032 Sum_probs=33.0
Q ss_pred CccceEEEecC--CCCCCCC----ChHHHHHHHHHHhCCCCcceEEEecCch
Q 010216 187 PQQFAVLVRDL--PDLPKGQ----SRKEQVDSYFKAIYPDTFYRSMVVTNNK 232 (515)
Q Consensus 187 ~~~~TVlV~~I--P~~~~~~----~~~~~l~~~f~~~~p~~v~~v~i~~d~~ 232 (515)
...+.|.++|+ |.++.++ +..++|++.|+++ |.|.++.+.+|..
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~--G~V~~v~i~~~~~ 52 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY--GLVKSIEIPRPVD 52 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTT--SCEEEEECCCCBT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHcc--CCEEEEEEeccCC
Confidence 35788999998 6666651 2347788888876 7899999988754
No 218
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=51.93 E-value=72 Score=25.10 Aligned_cols=31 Identities=10% Similarity=0.120 Sum_probs=18.9
Q ss_pred CCCCCCcccc------HHHHHHHHHHhHHHHHHHHHh
Q 010216 275 FLGLLGKRVD------AIEYYNEKIKEIIPKLEAEQK 305 (515)
Q Consensus 275 ~~~~~g~kvd------~i~~~~~~i~~l~~~I~~~r~ 305 (515)
.|+.||..++ .++.++.+++++..++.+.+.
T Consensus 49 ~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~ 85 (112)
T 1l8d_A 49 KCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLID 85 (112)
T ss_dssp ECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667787665 355666666666666655444
No 219
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.32 E-value=11 Score=28.96 Aligned_cols=32 Identities=19% Similarity=0.113 Sum_probs=22.9
Q ss_pred ceEEEEeCCHHHHHHHHHHhccCC--CCceeeeeC
Q 010216 314 GAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDA 346 (515)
Q Consensus 314 ~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~A 346 (515)
+.+||||++.++|..|.+ +...+ ...++|+.|
T Consensus 50 d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lk 83 (91)
T 2dnr_A 50 DKMWVTFLEGSSALNVLS-LNGKELLNRTITIALK 83 (91)
T ss_dssp SSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEEC
T ss_pred CCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeC
Confidence 449999999999998887 54432 335667665
No 220
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=46.71 E-value=28 Score=29.10 Aligned_cols=61 Identities=11% Similarity=0.016 Sum_probs=40.6
Q ss_pred cCCceEEEEeCCHHHHHHHHHHhccCC--CC-------------------ceeeeeCCCCCcccccccccchHHHHHHHH
Q 010216 311 KQLGAALVFFTSRVAAASAAQSLHAQL--VD-------------------TWTVSDAPESRELIWNNLNIKFFQRQIRQY 369 (515)
Q Consensus 311 ~~~~~aFVtF~~~~~a~~a~q~~~~~~--~~-------------------~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~ 369 (515)
+..|.|||.|.+..+|..|.+...... .. .......+.+..|+-.||...-.+.-++.+
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 90 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRV 90 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 457999999999999999987643210 00 011122334567888999888777777765
Q ss_pred HH
Q 010216 370 VV 371 (515)
Q Consensus 370 ~~ 371 (515)
+.
T Consensus 91 F~ 92 (158)
T 2kn4_A 91 FE 92 (158)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 221
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=46.56 E-value=28 Score=27.44 Aligned_cols=45 Identities=16% Similarity=0.167 Sum_probs=33.7
Q ss_pred cceEEEecCCCCC-CCCChHHHHHHHHHHhCCC-------CcceEEEecCchH
Q 010216 189 QFAVLVRDLPDLP-KGQSRKEQVDSYFKAIYPD-------TFYRSMVVTNNKE 233 (515)
Q Consensus 189 ~~TVlV~~IP~~~-~~~~~~~~l~~~f~~~~p~-------~v~~v~i~~d~~~ 233 (515)
..|+.++|+|.++ .+++.++.+++.|..+.|. +..++.+.++..+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~ 57 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPL 57 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTT
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChH
Confidence 4689999999877 4456668889999887654 4568888876654
No 222
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=42.85 E-value=15 Score=29.92 Aligned_cols=42 Identities=12% Similarity=-0.012 Sum_probs=33.2
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCch
Q 010216 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNK 232 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~ 232 (515)
.+.-.-|.|.|+|.+..+ .++|++.|+++ |+|..|.+.+|-.
T Consensus 15 ~~~G~il~v~~l~~~~~s---redLke~F~~~--G~V~~Vd~~~g~~ 56 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTC---REDLHILFSNH--GEIKWIDFVRGAK 56 (121)
T ss_dssp CCCCCEEEEEESCCSSCC---HHHHHHHTCSS--CCEEEEECCTTCS
T ss_pred ccCCeEEEEecCCCCcCC---HHHHHHHHHhc--CCEEEEEEecCCC
Confidence 366778999999999445 89999999985 6788888777553
No 223
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=42.49 E-value=11 Score=23.80 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=16.0
Q ss_pred cccHHHHHHHHHHhHHHHHHH
Q 010216 282 RVDAIEYYNEKIKEIIPKLEA 302 (515)
Q Consensus 282 kvd~i~~~~~~i~~l~~~I~~ 302 (515)
|.|-|.|+++++..+..+|++
T Consensus 29 kkdliaylekeianlrkkiee 49 (49)
T 3he5_A 29 KKDLIAYLEKEIANLRKKIEE 49 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 457788988888888887753
No 224
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=42.14 E-value=22 Score=31.94 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=28.8
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccCC--CCceeeeeCCC
Q 010216 312 QLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPE 348 (515)
Q Consensus 312 ~~~~aFVtF~~~~~a~~a~q~~~~~~--~~~~~v~~AP~ 348 (515)
..|.+||.|++..+|..|.+.+.... ...+.+..+|+
T Consensus 174 ~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 174 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred ceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 35889999999999999999987653 34566766653
No 225
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=41.23 E-value=24 Score=28.28 Aligned_cols=43 Identities=12% Similarity=0.061 Sum_probs=30.5
Q ss_pred CccceEEEecC--CCCCCCC----ChHHHHHHHHHHhCCCCcceEEEecCc
Q 010216 187 PQQFAVLVRDL--PDLPKGQ----SRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (515)
Q Consensus 187 ~~~~TVlV~~I--P~~~~~~----~~~~~l~~~f~~~~p~~v~~v~i~~d~ 231 (515)
...++|.++|+ |.+..++ +.+++|++.|+++ |.|.++.+.++.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kf--G~V~~v~i~~~~ 53 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKH--GGVIHIYVDKNS 53 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTT--TCCSEEEECTTC
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhcc--CCEEEEEEecCC
Confidence 35778999998 5555442 3456677778765 789999887764
No 226
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.21 E-value=36 Score=25.77 Aligned_cols=34 Identities=6% Similarity=-0.065 Sum_probs=26.8
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 228 (515)
...+||.|.|+ +++ +++|+++|+++ |.|.++.+.
T Consensus 13 ~~~~~l~V~n~--~~t----~~~l~~~F~~~--G~i~~v~i~ 46 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMT----PTLLRGAFSPF--GNIIDLSMD 46 (97)
T ss_dssp CCCSEEEEECS--SCC----HHHHHHHHTTT--SCEEEEEEE
T ss_pred CCCCEEEEcCC--CCC----HHHHHHHHhhC--CCEEEEEec
Confidence 46789999995 443 79999999987 578888774
No 227
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=40.46 E-value=5.5 Score=30.88 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=18.0
Q ss_pred CCceEEEEeCCHHHHHHHHH
Q 010216 312 QLGAALVFFTSRVAAASAAQ 331 (515)
Q Consensus 312 ~~~~aFVtF~~~~~a~~a~q 331 (515)
..|.|||+|.+..+|..|.+
T Consensus 49 ~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 49 SKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEEEESSCCCHHHHTT
T ss_pred ccceEEEEECCHHHHHHHHh
Confidence 45899999999999999887
No 228
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=37.21 E-value=22 Score=34.73 Aligned_cols=22 Identities=9% Similarity=0.107 Sum_probs=20.1
Q ss_pred ceEEEEeCCHHHHHHHHHHhcc
Q 010216 314 GAALVFFTSRVAAASAAQSLHA 335 (515)
Q Consensus 314 ~~aFVtF~~~~~a~~a~q~~~~ 335 (515)
|.|||+|++..+|..|.+.+..
T Consensus 57 gfaFV~f~~~~~A~~Ai~~lnG 78 (345)
T 3tht_A 57 PYSFARYRTTEESKRAYVTLNG 78 (345)
T ss_dssp SEEEEEESSHHHHHHHHHHTTT
T ss_pred CEEEEEECCHHHHHHHHHHhCC
Confidence 7999999999999999998764
No 229
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.45 E-value=40 Score=26.54 Aligned_cols=33 Identities=12% Similarity=0.067 Sum_probs=23.2
Q ss_pred ceEEEEeCCHHHHHHHHHH-hccCCCCceeeeeC
Q 010216 314 GAALVFFTSRVAAASAAQS-LHAQLVDTWTVSDA 346 (515)
Q Consensus 314 ~~aFVtF~~~~~a~~a~q~-~~~~~~~~~~v~~A 346 (515)
+.|.|||.+...|+.+.+. -|.-+...+.|.+.
T Consensus 48 ~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~ 81 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLAQADHELHGAQLSLRPA 81 (104)
T ss_dssp TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEEC
T ss_pred CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcC
Confidence 8999999999988877764 33333455556553
No 230
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=36.27 E-value=1.3e+02 Score=23.36 Aligned_cols=71 Identities=13% Similarity=0.065 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccCC--CCCCCCCccccCCCCCCCccccHHHHHHHHHHhHHHHHHHHHhhh
Q 010216 232 KEANKIYEELEGYKKKLARAEAVYAESKSAG--KPEGTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKIT 307 (515)
Q Consensus 232 ~~l~~l~~~~~~~~~~Le~~~~~~~~~k~~~--~~~~~rp~~r~~~~~~~g~kvd~i~~~~~~i~~l~~~I~~~r~~~ 307 (515)
.+++.|..+++++.++++....++....-.| .|.+.+-.| +- ...-..+.+..++++++|.+++++.|.+.
T Consensus 19 ~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH---~~--~NPa~~a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 19 LKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLH---MS--LNPTSVARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEE---ES--SCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeee---ec--CChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888777777776665321111 121111111 00 01222344455678888888998888776
No 231
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.09 E-value=37 Score=26.07 Aligned_cols=44 Identities=14% Similarity=0.031 Sum_probs=31.4
Q ss_pred CCccceEEEecCCCC----CCCCChHHHHHHHHHHhCCCCcceEEEecCc
Q 010216 186 RPQQFAVLVRDLPDL----PKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (515)
Q Consensus 186 ~~~~~TVlV~~IP~~----~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~ 231 (515)
.|.+=||+|+-.|.. .-+++.-.+|.+.|.++ |.|..+.++.|.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~--G~Vi~vr~~~d~ 51 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASF--GEVILIRFVEDK 51 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTT--CCEEEEEECSSS
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhC--CCeEEEEEecCC
Confidence 478899999998832 22223346788888886 578888877765
No 232
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.42 E-value=26 Score=27.16 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=18.0
Q ss_pred ceEEEEeCCHHHHHHHHHHhccC
Q 010216 314 GAALVFFTSRVAAASAAQSLHAQ 336 (515)
Q Consensus 314 ~~aFVtF~~~~~a~~a~q~~~~~ 336 (515)
..+||||++.++|..|.+ +...
T Consensus 59 d~~fVtF~d~~sAl~AI~-ldG~ 80 (95)
T 1ufw_A 59 GQMLVTFADSHSALSVLD-VDGM 80 (95)
T ss_dssp TEEEEECSCSHHHHHHHH-GGGS
T ss_pred CcEEEEEcChHHHHHHHh-cCCe
Confidence 449999999999999998 5443
No 233
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=29.73 E-value=1.1e+02 Score=24.54 Aligned_cols=24 Identities=4% Similarity=0.120 Sum_probs=18.4
Q ss_pred ccHHHHHHHHHHhHHHHHHHHHhh
Q 010216 283 VDAIEYYNEKIKEIIPKLEAEQKI 306 (515)
Q Consensus 283 vd~i~~~~~~i~~l~~~I~~~r~~ 306 (515)
.+.|..+++++++++.+|+..+..
T Consensus 35 ~~~i~qf~~E~~~l~k~I~~lk~~ 58 (123)
T 2lf0_A 35 ADKYAELEKEKATLEAEIARLREV 58 (123)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777888999999999876654
No 234
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.13 E-value=42 Score=25.98 Aligned_cols=45 Identities=9% Similarity=0.012 Sum_probs=31.9
Q ss_pred CCCccceEEEecCCCC-----CCCCChHHHHHHHHHHhCCCCcceEEEecCc
Q 010216 185 VRPQQFAVLVRDLPDL-----PKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (515)
Q Consensus 185 ~~~~~~TVlV~~IP~~-----~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~ 231 (515)
..|.+=||+|.-+|.. .-+++.-.+|.+.|.++ |.|..+.++.|.
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~--G~Vilvr~v~d~ 60 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSY--GTIVLVRINQGQ 60 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHH--SCCSEEEEETTE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHC--CCEEEEEEecCc
Confidence 4588999999998743 22223346688899887 578777777665
No 235
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=27.95 E-value=1.9e+02 Score=23.12 Aligned_cols=50 Identities=10% Similarity=0.132 Sum_probs=38.2
Q ss_pred hcCCCCCCccceEEEecCCCCCCCCChHHHHHHHHHHh---CCCCcceEEEecCchH
Q 010216 180 LMSPEVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAI---YPDTFYRSMVVTNNKE 233 (515)
Q Consensus 180 l~~~~~~~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~---~p~~v~~v~i~~d~~~ 233 (515)
+.|......++|+-+-+||..+. ++.++.+.+.. -+|.+.++.+.-|.+.
T Consensus 12 l~s~~~~~~~rtiaL~~ipDtvn----darIr~lve~~~~i~~g~i~KI~L~pDH~G 64 (117)
T 2l9w_A 12 LASRNSKELETLICLFPLSDKVS----PSLICQFLQEEIHINEKDIRKILLVSDFNG 64 (117)
T ss_dssp HHCCCTTTTTSCEEEECCCTTCC----HHHHHHHHHHHTCCCTTTCSEEEEETTTTE
T ss_pred HhccCCccCCcEEEEecCCCCCC----HHHHHHHHhhhhccCccceeEEEEecCCCc
Confidence 44554446699999999998876 78899998886 3567888888877643
No 236
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.63 E-value=71 Score=24.89 Aligned_cols=39 Identities=5% Similarity=0.094 Sum_probs=27.3
Q ss_pred CccceEEEecCC--CCCCCC-----ChHHHHHHHHHHhCCCCcceEEE
Q 010216 187 PQQFAVLVRDLP--DLPKGQ-----SRKEQVDSYFKAIYPDTFYRSMV 227 (515)
Q Consensus 187 ~~~~TVlV~~IP--~~~~~~-----~~~~~l~~~f~~~~p~~v~~v~i 227 (515)
...+||+|+|+. .++..+ ..+++|+++|+++ |.|.++.+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~--G~v~~v~i 58 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF--GQIRKLLL 58 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT--SCCSEEEE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc--CCEeEEEE
Confidence 468999999994 332211 1257899999887 68888865
No 237
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=26.30 E-value=73 Score=24.80 Aligned_cols=22 Identities=14% Similarity=0.048 Sum_probs=19.1
Q ss_pred CceEEEEeCCHHHHHHHHHHhc
Q 010216 313 LGAALVFFTSRVAAASAAQSLH 334 (515)
Q Consensus 313 ~~~aFVtF~~~~~a~~a~q~~~ 334 (515)
-.+|||+|++...|..|..++.
T Consensus 49 DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 49 DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp TTEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEEecCHHHHHHHHHhcc
Confidence 4799999999999999888764
No 238
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=25.52 E-value=62 Score=25.83 Aligned_cols=34 Identities=6% Similarity=-0.065 Sum_probs=26.7
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 010216 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (515)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 228 (515)
...+||.|.|+ +++ +++|+++|+++ |.|.++.+.
T Consensus 37 ~~~~~lfVgnl--~~t----e~~L~~~F~~~--G~I~~v~i~ 70 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMT----PTLLRGAFSPF--GNIIDLSMD 70 (121)
T ss_dssp CCCCEEEEECS--SCC----HHHHHHHHSTT--CCCSCEEEE
T ss_pred CCCCEEEEcCC--CCC----HHHHHHHHHcc--CCEEEEEEe
Confidence 46789999995 333 89999999987 678777765
No 239
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=24.63 E-value=2e+02 Score=20.83 Aligned_cols=24 Identities=13% Similarity=-0.004 Sum_probs=14.1
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhc
Q 010216 286 IEYYNEKIKEIIPKLEAEQKITLK 309 (515)
Q Consensus 286 i~~~~~~i~~l~~~I~~~r~~~~~ 309 (515)
|+-++.+|.+.+++|.+.|.+.++
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666665543
No 240
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=24.63 E-value=1.7e+02 Score=21.07 Aligned_cols=24 Identities=17% Similarity=0.447 Sum_probs=19.9
Q ss_pred ccccHHHHHHHHHHhHHHHHHHHH
Q 010216 281 KRVDAIEYYNEKIKEIIPKLEAEQ 304 (515)
Q Consensus 281 ~kvd~i~~~~~~i~~l~~~I~~~r 304 (515)
.+.|.++-+++.+++|++++.+.+
T Consensus 43 ~r~DEV~tLe~NLrEL~~ei~~~q 66 (69)
T 1z0k_B 43 GRMDEVRTLQENLRQLQDEYDQQQ 66 (69)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHh
Confidence 366888889999999999998765
No 241
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=22.93 E-value=1.3e+02 Score=22.24 Aligned_cols=30 Identities=20% Similarity=0.407 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHh
Q 010216 151 LVATYWVSFVTYFLLWR---------GYKHVSELRADAL 180 (515)
Q Consensus 151 ~i~~~l~~~~~~~~l~~---------e~~~~~~~R~~~l 180 (515)
++.+.+..++++.++|+ ||++|.+.|++..
T Consensus 17 vi~gilliGllllliwk~~~~i~DrrE~~kFEkE~~~~~ 55 (79)
T 2knc_B 17 VMGAILLIGLAALLIWKLLITIHDRKEFAKFEEERARAK 55 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44455555666666664 8888887777554
No 242
>2ldf_A Sarafotoxin-M, SRTX-M; endothelin-like peptide; NMR {Atractaspis microlepidota}
Probab=20.69 E-value=27 Score=19.65 Aligned_cols=6 Identities=33% Similarity=1.431 Sum_probs=3.8
Q ss_pred cccccc
Q 010216 351 ELIWNN 356 (515)
Q Consensus 351 DIiW~N 356 (515)
||||-|
T Consensus 18 DiIWvn 23 (26)
T 2ldf_A 18 DVIWDE 23 (26)
T ss_dssp TCCCSC
T ss_pred cEEEeC
Confidence 666665
No 243
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=20.29 E-value=1e+02 Score=16.93 Aligned_cols=15 Identities=33% Similarity=0.795 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 010216 236 KIYEELEGYKKKLAR 250 (515)
Q Consensus 236 ~l~~~~~~~~~~Le~ 250 (515)
+|.++.+.++.+|.+
T Consensus 5 elykeledlqerlrk 19 (27)
T 3twe_A 5 ELYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 244
>1edn_A Endothelin-1; signal polypeptide G-protein coupled-receptor ligand, vasoconstrictor; 2.18A {Homo sapiens} SCOP: j.28.1.1 PDB: 1v6r_A 6cmh_A*
Probab=20.09 E-value=26 Score=19.81 Aligned_cols=8 Identities=25% Similarity=0.854 Sum_probs=3.6
Q ss_pred Cccccccc
Q 010216 350 RELIWNNL 357 (515)
Q Consensus 350 ~DIiW~NL 357 (515)
-||||-|-
T Consensus 17 ldiIWvnt 24 (26)
T 1edn_A 17 LDIIWXXX 24 (26)
T ss_dssp TTSCC---
T ss_pred ccEEEeec
Confidence 47888764
Done!