BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010217
(515 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G9K|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae
pdb|4G9K|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae
pdb|4GAP|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Nad+
pdb|4GAP|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Nad+
pdb|4GAV|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Quinone
pdb|4GAV|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Quinone
Length = 471
Score = 243 bits (620), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 133/333 (39%), Positives = 206/333 (61%), Gaps = 15/333 (4%)
Query: 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVR 117
K V++LG+GW SFLK+++ Y+V +ISPR+YF FTPLLPS GTV+ +SI+EP+
Sbjct: 11 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIV 70
Query: 118 NIVRKKNVDICFWEAECFKIDAENKKVYCRS----------SQNTNLNGKEEFCMDYDYL 167
N KK ++ ++EAE I+ + V +S + L+ E + YDYL
Sbjct: 71 NFALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYL 130
Query: 168 VIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFV 227
+ A+GA NTF PGV + +FLKE+ ++ IRR + EKA+L D ER+R+L V
Sbjct: 131 ISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIV 190
Query: 228 IVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEK 287
+VGGGPTGVE A EL D+V +DL K P + + V+I L+EA +LNMF+K+++++A+
Sbjct: 191 VVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSYAQSH 250
Query: 288 FSRDGIDVKLGSMVVKVTDKEIFTKVR---GNGETSSMPYGMVVWSTGIAPHAIIKDFMK 344
I V L + V KV +K++ K + G ++PYG ++W+TG +I D K
Sbjct: 251 LENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLFK 310
Query: 345 QVGQTN--RRALATDEWLRVEGSDSIYALGDCA 375
++ + N +R LA +++L+V+GS++I+A+GD A
Sbjct: 311 KIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNA 343
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 463 DSQMKNLPATAQVAAQQGKYLAKCFNRMEE 492
D+ LP TAQVA Q+ +YLAK F++M +
Sbjct: 341 DNAFAGLPPTAQVAHQEAEYLAKNFDKMAQ 370
>pdb|4G6G|A Chain A, Crystal Structure Of Ndh With Trt
pdb|4G6G|B Chain B, Crystal Structure Of Ndh With Trt
pdb|4G6H|A Chain A, Crystal Structure Of Ndh With Nadh
pdb|4G6H|B Chain B, Crystal Structure Of Ndh With Nadh
pdb|4G73|A Chain A, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G73|B Chain B, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G74|A Chain A, Crystal Structure Of Ndh With Quinone
pdb|4G74|B Chain B, Crystal Structure Of Ndh With Quinone
Length = 502
Score = 243 bits (620), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 133/333 (39%), Positives = 206/333 (61%), Gaps = 15/333 (4%)
Query: 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVR 117
K V++LG+GW SFLK+++ Y+V +ISPR+YF FTPLLPS GTV+ +SI+EP+
Sbjct: 42 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIV 101
Query: 118 NIVRKKNVDICFWEAECFKIDAENKKVYCRS----------SQNTNLNGKEEFCMDYDYL 167
N KK ++ ++EAE I+ + V +S + L+ E + YDYL
Sbjct: 102 NFALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYL 161
Query: 168 VIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFV 227
+ A+GA NTF PGV + +FLKE+ ++ IRR + EKA+L D ER+R+L V
Sbjct: 162 ISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIV 221
Query: 228 IVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEK 287
+VGGGPTGVE A EL D+V +DL K P + + V+I L+EA +LNMF+K+++++A+
Sbjct: 222 VVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSYAQSH 281
Query: 288 FSRDGIDVKLGSMVVKVTDKEIFTKVR---GNGETSSMPYGMVVWSTGIAPHAIIKDFMK 344
I V L + V KV +K++ K + G ++PYG ++W+TG +I D K
Sbjct: 282 LENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLFK 341
Query: 345 QVGQTN--RRALATDEWLRVEGSDSIYALGDCA 375
++ + N +R LA +++L+V+GS++I+A+GD A
Sbjct: 342 KIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNA 374
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 463 DSQMKNLPATAQVAAQQGKYLAKCFNRMEE 492
D+ LP TAQVA Q+ +YLAK F++M +
Sbjct: 372 DNAFAGLPPTAQVAHQEAEYLAKNFDKMAQ 401
>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGC|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGE|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGE|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 79/325 (24%), Positives = 137/325 (42%), Gaps = 53/325 (16%)
Query: 62 VVLGTGWAGTSFLKNL--NNPSYDVQVISPRNYFAFTPL-LPSVTCGTVEA--RSIVEPV 116
V++G AG S + N+ + +V + +++ LP V G + + + I V
Sbjct: 40 VIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNV 99
Query: 117 RNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARAN 176
+ K +D E K+D E K VY ++ K+ F YD L+IA G R
Sbjct: 100 KTFRDKYGIDAKV-RHEVTKVDTEKKIVYAEHTKT-----KDVFEFSYDRLLIATGVRPV 153
Query: 177 TFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTG 235
G + + + LK + DA+RI + + E ++ I+GGG G
Sbjct: 154 MPEWEGRDLQGVHLLKTIPDAERILKTL---------------ETNKVEDVTIIGGGAIG 198
Query: 236 VEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDV 295
+E A E +L KV+ ++E DHI ++D + + ++ + I++
Sbjct: 199 LEMA--------ETFVELGKKVR------MIERNDHIGTIYDGDMAEYIYKEADKHHIEI 244
Query: 296 KLGSMVVKVTDKEIFTKVRGNGETSSMPY--GMVVWSTGIAPHAIIKDFMKQVG-QTNRR 352
V E V ET Y +V+ S G+ P+ DF++ +TN +
Sbjct: 245 LTNENVKAFKGNERVEAV----ETDKGTYKADLVLVSVGVKPNT---DFLEGTNIRTNHK 297
Query: 353 -ALATDEWLRVEGSDSIYALGDCAT 376
A+ + +++ D +YA GDCAT
Sbjct: 298 GAIEVNAYMQTNVQD-VYAAGDCAT 321
>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
pdb|3LB8|B Chain B, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
Length = 436
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 73/328 (22%), Positives = 131/328 (39%), Gaps = 61/328 (18%)
Query: 61 VVVLGTGWAGTSFLKNLNNPSYD--VQVISPRNYFA--FTPLLPSVTCGTVEARSIVEPV 116
VV++GTG AG L ++ ++++ PL + G A S+
Sbjct: 6 VVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRT 65
Query: 117 RNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARAN 176
+ +N+ + + I+ + ++V + +DYD LV+A G R
Sbjct: 66 PDAYAAQNIQL-LGGTQVTAINRDRQQVILSDGR----------ALDYDRLVLATGGRPR 114
Query: 177 TF----NTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGG 232
G N +L+ +EDA+ IRR +I V++GGG
Sbjct: 115 PLPVASGAVGKANNFRYLRTLEDAECIRRQLIADN-----------------RLVVIGGG 157
Query: 233 PTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-NMFDKRITAFAEEKFSRD 291
G+E AA +K ++ +TLL+ A +L + ++AF E
Sbjct: 158 YIGLEVAAT--------------AIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREA 203
Query: 292 GIDVKLGSMVVKV---TDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ 348
G+D++ G+ V TD++ T V + + +P +V+ G+ P+ + G
Sbjct: 204 GVDIRTGTQVCGFEMSTDQQKVTAVLCE-DGTRLPADLVIAGIGLIPNC---ELASAAGL 259
Query: 349 TNRRALATDEWLRVEGSDS-IYALGDCA 375
+ +E ++ SD I A+GDCA
Sbjct: 260 QVDNGIVINEHMQT--SDPLIMAVGDCA 285
>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1R|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
Length = 431
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/331 (22%), Positives = 131/331 (39%), Gaps = 67/331 (20%)
Query: 61 VVVLGTGWAGTSFLKNLNNPSYDVQV-------ISPRNYFAFTPLLPSVTCGTVEARSIV 113
VV++GTG AG L ++ + + P + PL + G A S+
Sbjct: 7 VVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHH---LPPLSKAYLAGKATAESLY 63
Query: 114 EPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGA 173
+ +N+ + + I+ + ++V + +DYD LV+A G
Sbjct: 64 LRTPDAYAAQNIQL-LGGTQVTAINRDRQQVILSDGR----------ALDYDRLVLATGG 112
Query: 174 RANTFNTP----GVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIV 229
R G N +L+ +EDA+ IRR +I V++
Sbjct: 113 RPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADN-----------------RLVVI 155
Query: 230 GGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-NMFDKRITAFAEEKF 288
GGG G+E AA +K ++ +TLL+ A +L + ++AF E
Sbjct: 156 GGGYIGLEVAAT--------------AIKANMHVTLLDTAARVLERVTAPPVSAFYEHLH 201
Query: 289 SRDGIDVKLGSMVVKV---TDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQ 345
G+D++ G+ V TD++ T V + + +P +V+ G+ P+ +
Sbjct: 202 REAGVDIRTGTQVCGFEMSTDQQKVTAVLCE-DGTRLPADLVIAGIGLIPNC---ELASA 257
Query: 346 VGQTNRRALATDEWLRVEGSDS-IYALGDCA 375
G + +E ++ SD I A+GDCA
Sbjct: 258 AGLQVDNGIVINEHMQT--SDPLIMAVGDCA 286
>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
pdb|3NTD|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
Length = 565
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 88/210 (41%), Gaps = 38/210 (18%)
Query: 99 LPSVTCGTVEARS--IVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNG 156
LP G + RS +++ + + NV++ + E ID K V R L+G
Sbjct: 45 LPYHISGEIAQRSALVLQTPESFKARFNVEVRV-KHEVVAIDRAAKLVTVRRL----LDG 99
Query: 157 KEEFCMDYDYLVIAMGARANTFNTPGVEENCNF-LKEVEDAQRIRRNVIESFEKASLPNL 215
E + YD L+++ GA PGV+ L+ + D RI + +
Sbjct: 100 SE-YQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPDMDRILQTI------------ 146
Query: 216 SDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM 275
+ + H +VGGG G+E LH +K TLLE AD ++
Sbjct: 147 ---QMNNVEHATVVGGGFIGLEMMESLHHL--------------GIKTTLLELADQVMTP 189
Query: 276 FDKRITAFAEEKFSRDGIDVKLGSMVVKVT 305
D+ + FA + G+D++LG+ + +V+
Sbjct: 190 VDREMAGFAHQAIRDQGVDLRLGTALSEVS 219
>pdb|3SZW|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ser Variant From Acidithiobacillus Ferrooxidans In
Complex With Decylubiquinone
Length = 437
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 65/148 (43%), Gaps = 15/148 (10%)
Query: 61 VVVLGTGWAGTSF---LKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVR 117
VV+LG G G +K ++V +IS +YF F P P V G E I P+R
Sbjct: 7 VVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIR 66
Query: 118 NIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANT 177
+ V +K + AE +IDAE +QN L + + YDYL+IA G +
Sbjct: 67 HYVERKGIHFIAQSAE--QIDAE--------AQNITL--ADGNTVHYDYLMIATGPKLAF 114
Query: 178 FNTPGVEENCNFLKEVEDAQRIRRNVIE 205
N PG + + ++ + R E
Sbjct: 115 ENVPGSDPHEGPVQSISTVDHAERAFAE 142
>pdb|3SXI|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
Complexed With Decylubiquinone
pdb|3T14|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
With Bound Disulfide
pdb|3T2K|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
With Bound Trisulfane
Length = 437
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 65/148 (43%), Gaps = 15/148 (10%)
Query: 61 VVVLGTGWAGTSF---LKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVR 117
VV+LG G G +K ++V +IS +YF F P P V G E I P+R
Sbjct: 7 VVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIR 66
Query: 118 NIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANT 177
+ V +K + AE +IDAE +QN L + + YDYL+IA G +
Sbjct: 67 HYVERKGIHFIAQSAE--QIDAE--------AQNITL--ADGNTVHYDYLMIATGPKLAF 114
Query: 178 FNTPGVEENCNFLKEVEDAQRIRRNVIE 205
N PG + + ++ + R E
Sbjct: 115 ENVPGSDPHEGPVQSIATVDHAERAFAE 142
>pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGB|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 117/285 (41%), Gaps = 50/285 (17%)
Query: 99 LPSVTCGTVEA--RSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNG 156
LP V G + + + I V+ K +D E K+D E K VY ++
Sbjct: 80 LPYVISGAIASTEKLIARNVKTFRDKYGIDAKV-RHEVTKVDTEKKIVYAEHTKT----- 133
Query: 157 KEEFCMDYDYLVIAMGARANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASLPNL 215
K+ F YD L+IA G R G + + + LK + DA+RI + +
Sbjct: 134 KDVFEFSYDRLLIATGVRPVXPEWEGRDLQGVHLLKTIPDAERILKTL------------ 181
Query: 216 SDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM 275
E ++ I+GGG G+E A E +L KV+ +E DHI +
Sbjct: 182 ---ETNKVEDVTIIGGGAIGLEXA--------ETFVELGKKVR------XIERNDHIGTI 224
Query: 276 FDKRITAFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPY--GMVVWSTGI 333
+D + ++ + I++ V E V ET Y +V+ S G+
Sbjct: 225 YDGDXAEYIYKEADKHHIEILTNENVKAFKGNERVEAV----ETDKGTYKADLVLVSVGV 280
Query: 334 APHAIIKDFMKQVG-QTNRR-ALATDEWLRVEGSDSIYALGDCAT 376
P+ DF++ +TN + A+ + + + D +YA GDCAT
Sbjct: 281 KPNT---DFLEGTNIRTNHKGAIEVNAYXQTNVQD-VYAAGDCAT 321
>pdb|3SX6|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys356ala Variant From Acidithiobacillus Ferrooxidans
Complexed With Decylubiquinone
Length = 437
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 60/129 (46%), Gaps = 15/129 (11%)
Query: 61 VVVLGTGWAGTSF---LKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVR 117
VV+LG G G +K ++V +IS +YF F P P V G E I P+R
Sbjct: 7 VVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIR 66
Query: 118 NIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANT 177
+ V +K + AE +IDAE +QN L + + YDYL+IA G +
Sbjct: 67 HYVERKGIHFIAQSAE--QIDAE--------AQNITL--ADGNTVHYDYLMIATGPKLAF 114
Query: 178 FNTPGVEEN 186
N PG + +
Sbjct: 115 ENVPGSDPH 123
>pdb|3KPK|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans, C160a Mutant
Length = 434
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 60/129 (46%), Gaps = 15/129 (11%)
Query: 61 VVVLGTGWAGTSF---LKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVR 117
VV+LG G G +K ++V +IS +YF F P P V G E I P+R
Sbjct: 4 VVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIR 63
Query: 118 NIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANT 177
+ V +K + AE +IDAE +QN L + + YDYL+IA G +
Sbjct: 64 HYVERKGIHFIAQSAE--QIDAE--------AQNITL--ADGNTVHYDYLMIATGPKLAF 111
Query: 178 FNTPGVEEN 186
N PG + +
Sbjct: 112 ENVPGSDPH 120
>pdb|3SY4|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Ser126ala Variant From Acidithiobacillus Ferrooxidans
pdb|3SYI|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Ser126ala Variant From Acidithiobacillus Ferrooxidans
Using 7.0 Kev Diffraction Data
Length = 437
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 60/129 (46%), Gaps = 15/129 (11%)
Query: 61 VVVLGTGWAGTSF---LKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVR 117
VV+LG G G +K ++V +IS +YF F P P V G E I P+R
Sbjct: 7 VVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIR 66
Query: 118 NIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANT 177
+ V +K + AE +IDAE +QN L + + YDYL+IA G +
Sbjct: 67 HYVERKGIHFIAQSAE--QIDAE--------AQNITL--ADGNTVHYDYLMIATGPKLAF 114
Query: 178 FNTPGVEEN 186
N PG + +
Sbjct: 115 ENVPGSDPH 123
>pdb|3T2Z|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans
pdb|3T2Z|B Chain B, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans
pdb|3T31|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With
Decylubiquinone
pdb|3SZ0|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With Sodium
Selenide
pdb|3SZC|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With Gold (I)
Cyanide
pdb|3T0K|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans With Bound Trisulfide And
Decylubiquinone
Length = 437
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 60/129 (46%), Gaps = 15/129 (11%)
Query: 61 VVVLGTGWAGTSF---LKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVR 117
VV+LG G G +K ++V +IS +YF F P P V G E I P+R
Sbjct: 7 VVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIR 66
Query: 118 NIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANT 177
+ V +K + AE +IDAE +QN L + + YDYL+IA G +
Sbjct: 67 HYVERKGIHFIAQSAE--QIDAE--------AQNITL--ADGNTVHYDYLMIATGPKLAF 114
Query: 178 FNTPGVEEN 186
N PG + +
Sbjct: 115 ENVPGSDPH 123
>pdb|3SZF|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase H198a
Variant From Acidithiobacillus Ferrooxidans In Complex
With Bound Trisulfide And Decylubiquinone
Length = 437
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 60/129 (46%), Gaps = 15/129 (11%)
Query: 61 VVVLGTGWAGTSF---LKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVR 117
VV+LG G G +K ++V +IS +YF F P P V G E I P+R
Sbjct: 7 VVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIR 66
Query: 118 NIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANT 177
+ V +K + AE +IDAE +QN L + + YDYL+IA G +
Sbjct: 67 HYVERKGIHFIAQSAE--QIDAE--------AQNITL--ADGNTVHYDYLMIATGPKLAF 114
Query: 178 FNTPGVEEN 186
N PG + +
Sbjct: 115 ENVPGSDPH 123
>pdb|3T2Y|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
His132ala Variant From Acidithiobacillus Ferrooxidans
With Bound Disulfide
Length = 434
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 60/129 (46%), Gaps = 15/129 (11%)
Query: 61 VVVLGTGWAGTSF---LKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVR 117
VV+LG G G +K ++V +IS +YF F P P V G E I P+R
Sbjct: 4 VVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIR 63
Query: 118 NIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANT 177
+ V +K + AE +IDAE +QN L + + YDYL+IA G +
Sbjct: 64 HYVERKGIHFIAQSAE--QIDAE--------AQNITL--ADGNTVHYDYLMIATGPKLAF 111
Query: 178 FNTPGVEEN 186
N PG + +
Sbjct: 112 ENVPGSDPH 120
>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
pdb|3NT6|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
Length = 574
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 85/210 (40%), Gaps = 38/210 (18%)
Query: 99 LPSVTCGTVEARS--IVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNG 156
LP G + RS +++ + + NV++ E ID K V R L+G
Sbjct: 45 LPYHISGEIAQRSALVLQTPESFKARFNVEVRVKH-EVVAIDRAAKLVTVRRL----LDG 99
Query: 157 KEEFCMDYDYLVIAMGARANTFNTPGVEENCNF-LKEVEDAQRIRRNVIESFEKASLPNL 215
E + YD L+++ GA PGV+ L+ + D RI + +
Sbjct: 100 SE-YQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPDXDRILQTI------------ 146
Query: 216 SDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM 275
+ + H +VGGG G+E LH +K TLLE AD +
Sbjct: 147 ---QXNNVEHATVVGGGFIGLEXXESLHHL--------------GIKTTLLELADQVXTP 189
Query: 276 FDKRITAFAEEKFSRDGIDVKLGSMVVKVT 305
D+ FA + G+D++LG+ + +V+
Sbjct: 190 VDREXAGFAHQAIRDQGVDLRLGTALSEVS 219
>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
pdb|3NTA|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
Length = 574
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 85/210 (40%), Gaps = 38/210 (18%)
Query: 99 LPSVTCGTVEARS--IVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNG 156
LP G + RS +++ + + NV++ E ID K V R L+G
Sbjct: 45 LPYHISGEIAQRSALVLQTPESFKARFNVEVRVKH-EVVAIDRAAKLVTVRRL----LDG 99
Query: 157 KEEFCMDYDYLVIAMGARANTFNTPGVEENCNF-LKEVEDAQRIRRNVIESFEKASLPNL 215
E + YD L+++ GA PGV+ L+ + D RI + +
Sbjct: 100 SE-YQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPDXDRILQTI------------ 146
Query: 216 SDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM 275
+ + H +VGGG G+E LH +K TLLE AD +
Sbjct: 147 ---QXNNVEHATVVGGGFIGLEXXESLHHL--------------GIKTTLLELADQVXTP 189
Query: 276 FDKRITAFAEEKFSRDGIDVKLGSMVVKVT 305
D+ FA + G+D++LG+ + +V+
Sbjct: 190 VDREXAGFAHQAIRDQGVDLRLGTALSEVS 219
>pdb|3HYW|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
Length = 430
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 14/134 (10%)
Query: 74 LKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAE 133
L+NL P + +IS R YF FTP P + G + I P+ ++ K N++ +AE
Sbjct: 21 LRNLM-PDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINEKAE 79
Query: 134 CFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEV 193
DA + T +GK+ ++YDYLVIA G + F G EEN +
Sbjct: 80 SIDPDA---------NTVTTQSGKK---IEYDYLVIATGPKL-VFGAEGQEENSTSICTA 126
Query: 194 EDAQRIRRNVIESF 207
E A ++ + E +
Sbjct: 127 EHALETQKKLQELY 140
>pdb|3HYV|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYX|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
Length = 430
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 107/249 (42%), Gaps = 36/249 (14%)
Query: 74 LKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAE 133
L+NL P + +IS R YF FTP P + G + I P+ ++ K N++ +AE
Sbjct: 21 LRNLM-PDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINEKAE 79
Query: 134 CFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEV 193
DA + T +GK+ ++YDYLVIA G + F G EEN +
Sbjct: 80 SIDPDA---------NTVTTQSGKK---IEYDYLVIATGPKL-VFGAEGQEENSTSICTA 126
Query: 194 EDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKL 253
E A ++ + E + V++G P GV ++F ++L
Sbjct: 127 EHALETQKKLQELYANPGP--------------VVIGAIP-GVSXFGPAYEFALMLHYEL 171
Query: 254 YPK-VKDSVKITLLEAADHILNMFDKRITA---FAEEKFSRDGIDVKLGSMVVKV--TDK 307
+ ++ V +T + + ++ + I A E+ F+ ID + ++ VK DK
Sbjct: 172 KKRGIRYKVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNID-WIANVAVKAIEPDK 230
Query: 308 EIFTKVRGN 316
I+ + GN
Sbjct: 231 VIYEDLNGN 239
>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICR|B Chain B, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICS|A Chain A, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICS|B Chain B, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICT|A Chain A, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
pdb|3ICT|B Chain B, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
Length = 588
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 81/192 (42%), Gaps = 39/192 (20%)
Query: 99 LPSVTCGTVEARS--IVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNG 156
LP G + R +V+ V ++ N+DI +E KI+ E K + + N+
Sbjct: 80 LPYYIGGVITERQKLLVQTVERXSKRFNLDIRVL-SEVVKINKEEKTITIK-----NVTT 133
Query: 157 KEEFCMDYDYLVIAMGARANTFNTPGVEENCNF--LKEVEDAQRIRRNVIESFEKASLPN 214
E + YD L+++ GA+ + PG+EE L+ V D RI+ +
Sbjct: 134 NETYNEAYDVLILSPGAKPIVPSIPGIEEAKALFTLRNVPDTDRIKAYI----------- 182
Query: 215 LSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN 274
DE++ R H ++GGG GVE L + +++TL+E A+ +
Sbjct: 183 --DEKKPR--HATVIGGGFIGVEXVENLRE--------------RGIEVTLVEXANQVXP 224
Query: 275 MFDKRITAFAEE 286
D A+ E
Sbjct: 225 PIDYEXAAYVHE 236
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
pdb|1EBD|B Chain B, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 455
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 20/152 (13%)
Query: 226 FVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAE 285
V++GGG G+E +F K+T+LE A IL+ F+K++ A +
Sbjct: 173 LVVIGGGYIGIELGTAYANF--------------GTKVTILEGAGEILSGFEKQMAAIIK 218
Query: 286 EKFSRDGIDVKLGSMVVKVTDKE--IFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFM 343
++ + G++V ++ ++E + NGET ++ V+ + G P+ + +
Sbjct: 219 KRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNT-DELGL 277
Query: 344 KQVG--QTNRRALATDEWLRVEGSDSIYALGD 373
+Q+G TNR + D+ R +I+A+GD
Sbjct: 278 EQIGIKMTNRGLIEVDQQCRTS-VPNIFAIGD 308
>pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus
Pfu-1140779- 001
Length = 367
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 77/342 (22%), Positives = 129/342 (37%), Gaps = 73/342 (21%)
Query: 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVI--SPRNYFAFTPLLPSVTCGTVEARSIVEPVR 117
KVV++G G G K L+ +Y+V VI P Y++ P+L G + +
Sbjct: 10 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYS-KPMLSHYIAGFIPRNRLFPYSL 67
Query: 118 NIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANT 177
+ RK+ ++I E E ID K V + + YD LV+A GARA
Sbjct: 68 DWYRKRGIEIRLAE-EAKLIDRGRKVVITEKGE-----------VPYDTLVLATGARARE 115
Query: 178 FNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVE 237
G +E L+ + DA RI+ ++ S E + +E
Sbjct: 116 PQIKG-KEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIG-----------------LE 157
Query: 238 FAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKL 297
A L + + L+ L + D+ ++ ++ G+ L
Sbjct: 158 LAGNLAE--------------AGYHVKLIHRGAMFLGL-DEELSNMIKDMLEETGVKFFL 202
Query: 298 GSMVVKVTDKEIFTKVRGNGETSSMPYGMV-VWSTGIAPHAIIKDFMKQVGQTNRRALAT 356
S +++ ++ + T S G V + + GI P+ D ++ G R +
Sbjct: 203 NSELLEANEEGVLT-------NSGFIEGKVKICAIGIVPNV---DLARRSGIHTGRGILI 252
Query: 357 DEWLRVEGSDSIYALGDC------------ATVNQRRVMEDI 386
D+ R D +YA+GDC A + Q RV+ DI
Sbjct: 253 DDNFRTSAKD-VYAIGDCAEYSGIIAGTAKAAMEQARVLADI 293
>pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From
Novosphingobium Aromaticivorans
Length = 415
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 104/251 (41%), Gaps = 39/251 (15%)
Query: 129 FWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVE-ENC 187
FWE + ++ + V + +T G + ++Y L+ A G + G +
Sbjct: 74 FWEDKAVEMKLGAEVVSLDPAAHTVKLG-DGSAIEYGKLIWATGGDPRRLSCVGADLAGV 132
Query: 188 NFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVD 247
+ ++ EDA R+ + + A V++GGG G+E AA L F
Sbjct: 133 HAVRTKEDADRLMAELDAGAKNA----------------VVIGGGYIGLEAAAVLTKF-- 174
Query: 248 EDLFKLYPKVKDSVKITLLEAADHIL-NMFDKRITAFAEEKFSRDGIDVKLGSMVVKV-T 305
V +TLLEA +L + + ++ F + + G+D++ G+ + +
Sbjct: 175 ------------GVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEG 222
Query: 306 DKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEWLRVEGS 365
D T VR + S +P +V+ GI P + G + + DE+ R +
Sbjct: 223 DGTKVTGVRMQ-DGSVIPADIVIVGIGIVPCV---GALISAGASGGNGVDVDEFCRTSLT 278
Query: 366 DSIYALGDCAT 376
D +YA+GDCA
Sbjct: 279 D-VYAIGDCAA 288
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query: 279 RITAFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAP 335
R F E+K +++KLG+ VV + K+ G+ S++ YG ++W+TG P
Sbjct: 70 RPAQFWEDK----AVEMKLGAEVVSLDPAAHTVKL---GDGSAIEYGKLIWATGGDP 119
>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
pdb|2CDU|B Chain B, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
Length = 452
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 99/251 (39%), Gaps = 48/251 (19%)
Query: 133 ECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFL-K 191
+ +D E K + + +L EE YD L++ G++ PG++ + +L K
Sbjct: 80 QVTNVDPETKTIKVK-----DLITNEEKTEAYDKLIMTTGSKPTVPPIPGIDSSRVYLCK 134
Query: 192 EVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLF 251
DA+++ EE + I+G G G E A +
Sbjct: 135 NYNDAKKLF-----------------EEAPKAKTITIIGSGYIGAELAEAYSN------- 170
Query: 252 KLYPKVKDSVKITLLEAADHIL-NMFDKRITAFAEEKFSRDGIDVKLGSMVVKV--TDKE 308
+ + L++ + +L FDK T + + G+++ LGS V D E
Sbjct: 171 -------QNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDE 223
Query: 309 IFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMK-QVGQTNRRALATDEWLRVEGSDS 367
I TK E S + + G P+ + +K +V + A+ TDE++ D
Sbjct: 224 IITKTLDGKEIKS---DIAILCIGFRPNT---ELLKGKVAMLDNGAIITDEYMHSSNRD- 276
Query: 368 IYALGDCATVN 378
I+A GD A V+
Sbjct: 277 IFAAGDSAAVH 287
>pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine
Nucleotide-Disulphide Oxidoreductase From Desulfovibrio
Vulgaris
Length = 472
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 98/228 (42%), Gaps = 35/228 (15%)
Query: 153 NLNGKEEFCMDYDYLVIAMGARANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKAS 211
NL E + YD LV+A+G++AN G++ + +++A+ ++ +
Sbjct: 103 NLRTGERRTLKYDKLVLALGSKANRPPVEGMDLAGVTPVTNLDEAEFVQHAI-------- 154
Query: 212 LPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADH 271
+ VIVGGG G+E A L D + T++E AD
Sbjct: 155 -------SAGEVSKAVIVGGGFIGLEMAVSLADMW-------------GIDTTVVELADQ 194
Query: 272 ILNMF-DKRITAFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWS 330
I+ F K ++ ++ + V G VV++ + E R + ++ +V+ +
Sbjct: 195 IMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRL-EGENGKVARVITDKRTLDADLVILA 253
Query: 331 TGIAPHA-IIKDFMKQVGQTNRRALATDEWLRVEGSDSIYALGDCATV 377
G++P+ + +D ++ R A+ D +R D I+A GDC T+
Sbjct: 254 AGVSPNTQLARDAGLELDP--RGAIIVDTRMRTSDPD-IFAGGDCVTI 298
>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase
pdb|4EMI|A Chain A, Toluene Dioxygenase Reductase In Reduced State In Complex
With Nad+
pdb|4EMJ|A Chain A, Complex Between The Reductase And Ferredoxin Components Of
Toluene Dioxygenase
Length = 410
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 35/176 (19%)
Query: 130 WEAECFKIDA-ENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVE-ENC 187
W E +ID +V Q ++ + + D +VIA G+RA T PG +
Sbjct: 66 WYGEA-RIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRARTMALPGSQLPGV 124
Query: 188 NFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVD 247
L+ D Q +R +S+ A+ +IVGGG G E A
Sbjct: 125 VTLRTYGDVQVLR----DSWTSAT-------------RLLIVGGGLIGCEVATTAR---- 163
Query: 248 EDLFKLYPKVKDSVKITLLEAADHIL-NMFDKRITAFAEEKFSRDGIDVKLGSMVV 302
K + +T+LEA D +L + +RI A+ + G+ V+LG+ VV
Sbjct: 164 ----------KLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVV 209
>pdb|3H8I|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8I|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
Length = 409
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 12/156 (7%)
Query: 60 KVVVLGTGWAGTS---FLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPV 116
KV+VLG + + LK L DV+VI+ + F P LP V G + + +
Sbjct: 3 KVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDL 62
Query: 117 RNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARAN 176
+ +K I F E KIDA++ VY + EE +YDY+++ +GA
Sbjct: 63 SEALPEKG--IQFQEGTVEKIDAKSSMVYYTKPDGSM---AEE---EYDYVIVGIGAHLA 114
Query: 177 TFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASL 212
T G ++ + E E A ++R +ESF+ ++
Sbjct: 115 TELVKGWDKYGYSVCEPEFATKLREK-LESFQGGNI 149
>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 82/365 (22%), Positives = 151/365 (41%), Gaps = 61/365 (16%)
Query: 60 KVVVLGTGWAGTSFLKNLNN--PSYDVQVISPRNYFAFTPLLPSVTCGT---VEAR-SIV 113
KV+VLG+ G ++ L N P ++Q ++ +F +CG +E + V
Sbjct: 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFC------SCGMQLYLEGKVKDV 55
Query: 114 EPVRNIVRKK----NVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVI 169
VR + +K V++ F E I + +V + +L EE +YD L+I
Sbjct: 56 NSVRYMTGEKMESRGVNV-FSNTEITAIQPKEHQVTVK-----DLVSGEERVENYDKLII 109
Query: 170 AMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIV 229
+ GA + PG + + +L R R+ I+ +K P ++ + V++
Sbjct: 110 SPGAVPFELDIPGKDLDNIYL------MRGRQWAIKLKQKTVDPEVN--------NVVVI 155
Query: 230 GGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMF-DKRITAFAEEKF 288
G G G+E A K K+T+++ D L ++ DK T E+
Sbjct: 156 GSGYIGIEAAEAF--------------AKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEM 201
Query: 289 SRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ 348
+ I + G V + KV + ++ +VV + G+ P+ ++K +
Sbjct: 202 EANNITIATGETVERYEGDGRVQKVV--TDKNAYDADLVVVAVGVRPNTA---WLKGTLE 256
Query: 349 TNRRAL-ATDEWLRVEGSDSIYALGDCATVNQRRVMEDI-AAIFSKADKDNSGTLTVKEF 406
+ L TDE++R D ++A+GD + ++ A+ + A K G VK
Sbjct: 257 LHPNGLIKTDEYMRTSEPD-VFAVGDATLIKYNPADTEVNIALATNARK--QGRFAVKNL 313
Query: 407 QEVIK 411
+E +K
Sbjct: 314 EEPVK 318
>pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2
System From Rhodopseudomonas Palustris
Length = 404
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 103/252 (40%), Gaps = 51/252 (20%)
Query: 137 IDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVE-ENCNFLKEVED 195
ID E +K+ S ++Y +LV+A GAR + P + +L+ +++
Sbjct: 82 IDREGRKLLLASGT----------AIEYGHLVLATGARNRMLDVPNASLPDVLYLRTLDE 131
Query: 196 AQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELH-DFVDEDLFKLY 254
++ +R+ + D++ H V++G G G+EFAA ++ D+ +L
Sbjct: 132 SEVLRQR------------MPDKK-----HVVVIGAGFIGLEFAATARAKGLEVDVVELA 174
Query: 255 PKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK--EIFTK 312
P+V + + I+++ ++ S GI + G ++ + +
Sbjct: 175 PRV--------------MARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGV 220
Query: 313 VRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEWLRVEGSDSIYALG 372
V +G T +P +VV G+ P+ + G + D+ L + I A+G
Sbjct: 221 VLSDGNT--LPCDLVVVGVGVIPNV---EIAAAAGLPTAAGIIVDQQL-LTSDPHISAIG 274
Query: 373 DCATVNQRRVME 384
DCA R E
Sbjct: 275 DCALFESVRFGE 286
>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 82/362 (22%), Positives = 150/362 (41%), Gaps = 55/362 (15%)
Query: 60 KVVVLGTGWAGTSFLKNLNN--PSYDVQVISPRNYFAFTPLLPSVTCGTVEAR-SIVEPV 116
KV+VLG+ G ++ L N P ++Q ++ +F L S +E + V V
Sbjct: 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISF---LSSGMQLYLEGKVKDVNSV 58
Query: 117 RNIVRKK----NVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMG 172
R + +K V++ F E I + +V + +L EE +YD L+I+ G
Sbjct: 59 RYMTGEKMESRGVNV-FSNTEITAIQPKEHQVTVK-----DLVSGEERVENYDKLIISPG 112
Query: 173 ARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGG 232
A + PG + + +L R R+ I+ +K P ++ + V++G G
Sbjct: 113 AVPFELDIPGKDLDNIYL------MRGRQWAIKLKQKTVDPEVN--------NVVVIGSG 158
Query: 233 PTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMF-DKRITAFAEEKFSRD 291
G+E A K K+T+++ D L ++ DK T E+ +
Sbjct: 159 YIGIEAAEAF--------------AKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEAN 204
Query: 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNR 351
I + G V + KV + ++ +VV + G+ P+ ++K + +
Sbjct: 205 NITIATGETVERYEGDGRVQKVV--TDKNAYDADLVVVAVGVRPNTA---WLKGTLELHP 259
Query: 352 RAL-ATDEWLRVEGSDSIYALGDCATVNQRRVMEDI-AAIFSKADKDNSGTLTVKEFQEV 409
L TDE++R D ++A+GD + ++ A+ + A K G VK +E
Sbjct: 260 NGLIKTDEYMRTSEPD-VFAVGDATLIKYNPADTEVNIALATNARK--QGRFAVKNLEEP 316
Query: 410 IK 411
+K
Sbjct: 317 VK 318
>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid
pdb|1NPX|A Chain A, Structure Of Nadh Peroxidase From Streptococcus Faecalis
10c1 Refined At 2.16 Angstroms Resolution
pdb|2NPX|A Chain A, Nadh Binding Site And Catalysis Of Nadh Peroxidase
Length = 447
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/359 (21%), Positives = 147/359 (40%), Gaps = 49/359 (13%)
Query: 60 KVVVLGTGWAGTSFLKNLNN--PSYDVQVISPRNYFAFTPL-LPSVTCGTV-EARSIVEP 115
KV+VLG+ G ++ L N P ++Q ++ +F + G V + S+
Sbjct: 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSXGMQLYLEGKVKDVNSVRYM 61
Query: 116 VRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA 175
+ + V++ F E I + +V + +L EE +YD L+I+ GA
Sbjct: 62 TGEKMESRGVNV-FSNTEITAIQPKEHQVTVK-----DLVSGEERVENYDKLIISPGAVP 115
Query: 176 NTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTG 235
+ PG + + +L R R+ I+ +K P ++ + V++G G G
Sbjct: 116 FELDIPGKDLDNIYL------MRGRQWAIKLKQKTVDPEVN--------NVVVIGSGYIG 161
Query: 236 VEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMF-DKRITAFAEEKFSRDGID 294
+E A K K+T+++ D L ++ DK T E+ + I
Sbjct: 162 IEAAEAF--------------AKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNIT 207
Query: 295 VKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRAL 354
+ G V + KV + ++ +VV + G+ P+ ++K + + L
Sbjct: 208 IATGETVERYEGDGRVQKVV--TDKNAYDADLVVVAVGVRPNTA---WLKGTLELHPNGL 262
Query: 355 -ATDEWLRVEGSDSIYALGDCATVNQRRVMEDI-AAIFSKADKDNSGTLTVKEFQEVIK 411
TDE++R D ++A+GD + ++ A+ + A K G VK +E +K
Sbjct: 263 IKTDEYMRTSEPD-VFAVGDATLIKYNPADTEVNIALATNARK--QGRFAVKNLEEPVK 318
>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 81/362 (22%), Positives = 150/362 (41%), Gaps = 55/362 (15%)
Query: 60 KVVVLGTGWAGTSFLKNLNN--PSYDVQVISPRNYFAFTPLLPSVTCGTVEAR-SIVEPV 116
KV+VLG+ G ++ L N P ++Q ++ +F L + +E + V V
Sbjct: 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISF---LSAGMQLYLEGKVKDVNSV 58
Query: 117 RNIVRKK----NVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMG 172
R + +K V++ F E I + +V + +L EE +YD L+I+ G
Sbjct: 59 RYMTGEKMESRGVNV-FSNTEITAIQPKEHQVTVK-----DLVSGEERVENYDKLIISPG 112
Query: 173 ARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGG 232
A + PG + + +L R R+ I+ +K P ++ + V++G G
Sbjct: 113 AVPFELDIPGKDLDNIYL------MRGRQWAIKLKQKTVDPEVN--------NVVVIGSG 158
Query: 233 PTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMF-DKRITAFAEEKFSRD 291
G+E A K K+T+++ D L ++ DK T E+ +
Sbjct: 159 YIGIEAAEAF--------------AKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEAN 204
Query: 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNR 351
I + G V + KV + ++ +VV + G+ P+ ++K + +
Sbjct: 205 NITIATGETVERYEGDGRVQKVV--TDKNAYDADLVVVAVGVRPNTA---WLKGTLELHP 259
Query: 352 RAL-ATDEWLRVEGSDSIYALGDCATVNQRRVMEDI-AAIFSKADKDNSGTLTVKEFQEV 409
L TDE++R D ++A+GD + ++ A+ + A K G VK +E
Sbjct: 260 NGLIKTDEYMRTSEPD-VFAVGDATLIKYNPADTEVNIALATNARK--QGRFAVKNLEEP 316
Query: 410 IK 411
+K
Sbjct: 317 VK 318
>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 80/361 (22%), Positives = 147/361 (40%), Gaps = 53/361 (14%)
Query: 60 KVVVLGTGWAGTSFLKNLNN--PSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVR 117
KV+VLG+ G ++ L N P ++Q ++ +F L + V VR
Sbjct: 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISF--LCXGMQLYLEGKVKDVNSVR 59
Query: 118 NIVRKK----NVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGA 173
+ +K V++ F E I + +V + +L EE +YD L+I+ GA
Sbjct: 60 YMTGEKMESRGVNV-FSNTEITAIQPKEHQVTVK-----DLVSGEERVENYDKLIISPGA 113
Query: 174 RANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGP 233
+ PG + + +L R R+ I+ +K P ++ + V++G G
Sbjct: 114 VPFELDIPGKDLDNIYL------MRGRQWAIKLKQKTVDPEVN--------NVVVIGSGY 159
Query: 234 TGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMF-DKRITAFAEEKFSRDG 292
G+E A K K+T+++ D L ++ DK T E+ +
Sbjct: 160 IGIEAAEAF--------------AKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANN 205
Query: 293 IDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRR 352
I + G V + KV + ++ +VV + G+ P+ ++K + +
Sbjct: 206 ITIATGETVERYEGDGRVQKVV--TDKNAYDADLVVVAVGVRPNTA---WLKGTLELHPN 260
Query: 353 AL-ATDEWLRVEGSDSIYALGDCATVNQRRVMEDI-AAIFSKADKDNSGTLTVKEFQEVI 410
L TDE++R D ++A+GD + ++ A+ + A K G VK +E +
Sbjct: 261 GLIKTDEYMRTSEPD-VFAVGDATLIKYNPADTEVNIALATNARK--QGRFAVKNLEEPV 317
Query: 411 K 411
K
Sbjct: 318 K 318
>pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
pdb|3O0H|B Chain B, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
Length = 484
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 83/215 (38%), Gaps = 34/215 (15%)
Query: 226 FVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAE 285
VIVGGG GVEFA H VK TLL D IL FD +
Sbjct: 194 IVIVGGGYIGVEFANIFHGL--------------GVKTTLLHRGDLILRNFDYDLRQLLN 239
Query: 286 EKFSRDGIDVKLGSMVVKVTDKE-IFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMK 344
+ GI + + V +V E + V NG+T + V+ +TG P+ +
Sbjct: 240 DAMVAKGISIIYEATVSQVQSTENCYNVVLTNGQT--ICADRVMLATGRVPNTTGLGLER 297
Query: 345 QVGQTNR-RALATDEWLRVEGSDSIYALGDC-ATVNQRRVMEDIAAIFSKADKDNSGT-- 400
+ N A+ DE + S I+A+GD + V A F K +N+ T
Sbjct: 298 AGVKVNEFGAVVVDEKMTTNVSH-IWAVGDVTGHIQLTPVAIHDAMCFVKNAFENTSTTP 356
Query: 401 ----LTVKEFQE--------VIKDICERYPQVELY 423
+T F + +D RY +VE+Y
Sbjct: 357 DYDLITTAVFSQPEIGTVGLSEEDALHRYKRVEIY 391
>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m
Length = 447
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 78/359 (21%), Positives = 147/359 (40%), Gaps = 49/359 (13%)
Query: 60 KVVVLGTGWAGTSFLKNLNN--PSYDVQVISPRNYFAFTPL-LPSVTCGTV-EARSIVEP 115
KV+VLG+ G ++ L N P ++Q ++ +F + G V + S+
Sbjct: 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSXGMQLYLEGKVKDVNSVRYM 61
Query: 116 VRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA 175
+ + V++ F E I + +V + +L EE +YD L+I+ GA
Sbjct: 62 TGEKMESRGVNV-FSNTEITAIQPKEHQVTVK-----DLVSGEERVENYDKLIISPGAVP 115
Query: 176 NTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTG 235
+ PG + + +L R R+ I+ +K P ++ + V++G G G
Sbjct: 116 FELDIPGKDLDNIYL------MRGRQWAIKLKQKTVDPEVN--------NVVVIGSGYIG 161
Query: 236 VEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMF-DKRITAFAEEKFSRDGID 294
+E A K K+T+++ D L ++ DK T E+ + I
Sbjct: 162 IEAAEAF--------------AKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNIT 207
Query: 295 VKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRAL 354
+ G V + KV + ++ +VV + G+ P+ ++K + + L
Sbjct: 208 IATGETVERYEGDGRVQKVV--TDKNAYDADLVVVAVGVRPNTA---WLKGTLELHPNGL 262
Query: 355 -ATDEWLRVEGSDSIYALGDCATVNQRRVMEDI-AAIFSKADKDNSGTLTVKEFQEVIK 411
TDE++R D ++A+GD + ++ A+ + A K G VK +E +K
Sbjct: 263 IKTDEYMRTSEPD-VFAVGDATLIKYNPADTEVNIALATNAMK--QGRFAVKNLEEPVK 318
>pdb|1ONF|A Chain A, Crystal Structure Of Plasmodium Falciparum Glutathione
Reductase
Length = 500
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
Query: 269 ADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVV---KVTDKEIFTKVRGNGETSSMPYG 325
+ IL FD+ + E ++ I++ + VV KV+DK + + +G +
Sbjct: 208 GNRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHL-SDGRIYEH-FD 265
Query: 326 MVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMED 385
V++ G +P K +TN + DE R ++IYA+GDC V + + +ED
Sbjct: 266 HVIYCVGRSPDTENLKLEKLNVETNNNYIVVDENQRT-SVNNIYAVGDCCMVKKSKEIED 324
Query: 386 I 386
+
Sbjct: 325 L 325
>pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
pdb|4EQW|B Chain B, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
Length = 437
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 99/234 (42%), Gaps = 46/234 (19%)
Query: 153 NLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNF-LKEVEDAQRIRRNVIESFEKAS 211
N E+F YD L+++ GA AN+ G E + F L+ +ED + I+ F KA+
Sbjct: 94 NRKTNEQFEESYDKLILSPGASANSL---GFESDITFTLRNLEDT-----DAIDQFIKAN 145
Query: 212 LPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFK--LYPKVKDSVKITLLEAA 269
++ ++VG G +E V E+L++ L+P TL+ +
Sbjct: 146 ----------QVDKVLVVGAGYVSLE--------VLENLYERGLHP--------TLIHRS 179
Query: 270 DHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVW 329
D I + D + ++ + I +L + + EI K +G+ Y M++
Sbjct: 180 DKINKLMDADMNQPILDELDKREIPYRLNEEINAINGNEITFK---SGKVEH--YDMIIE 234
Query: 330 STGIAPHAIIKDFMKQVG-QTNRRALATDEWLRVEGSDSIYALGDCATVNQRRV 382
G P++ F++ + +R+ +IYA+GD AT + R V
Sbjct: 235 GVGTHPNS---KFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHV 285
>pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQS|B Chain B, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 99/234 (42%), Gaps = 46/234 (19%)
Query: 153 NLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNF-LKEVEDAQRIRRNVIESFEKAS 211
N E+F YD L+++ GA AN+ G E + F L+ +ED + I+ F KA+
Sbjct: 94 NRKTNEQFEESYDKLILSPGASANSL---GFESDITFTLRNLEDT-----DAIDQFIKAN 145
Query: 212 LPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFK--LYPKVKDSVKITLLEAA 269
++ ++VG G +E V E+L++ L+P TL+ +
Sbjct: 146 ----------QVDKVLVVGAGYVSLE--------VLENLYERGLHP--------TLIHRS 179
Query: 270 DHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVW 329
D I + D + ++ + I +L + + EI K +G+ Y M++
Sbjct: 180 DKINKLMDADMNQPILDELDKREIPYRLNEEINAINGNEITFK---SGKVEH--YDMIIE 234
Query: 330 STGIAPHAIIKDFMKQVG-QTNRRALATDEWLRVEGSDSIYALGDCATVNQRRV 382
G P++ F++ + +R+ +IYA+GD AT + R V
Sbjct: 235 GVGTHPNS---KFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHV 285
>pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQR|B Chain B, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 99/234 (42%), Gaps = 46/234 (19%)
Query: 153 NLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNF-LKEVEDAQRIRRNVIESFEKAS 211
N E+F YD L+++ GA AN+ G E + F L+ +ED + I+ F KA+
Sbjct: 94 NRKTNEQFEESYDKLILSPGASANSL---GFESDITFTLRNLEDT-----DAIDQFIKAN 145
Query: 212 LPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFK--LYPKVKDSVKITLLEAA 269
++ ++VG G +E V E+L++ L+P TL+ +
Sbjct: 146 ----------QVDKVLVVGAGYVSLE--------VLENLYERGLHP--------TLIHRS 179
Query: 270 DHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVW 329
D I + D + ++ + I +L + + EI K +G+ Y M++
Sbjct: 180 DKINKLMDADMNQPILDELDKREIPYRLNEEINAINGNEITFK---SGKVEH--YDMIIE 234
Query: 330 STGIAPHAIIKDFMKQVG-QTNRRALATDEWLRVEGSDSIYALGDCATVNQRRV 382
G P++ F++ + +R+ +IYA+GD AT + R V
Sbjct: 235 GVGTHPNS---KFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHV 285
>pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
pdb|1YQZ|B Chain B, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
Length = 438
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 99/234 (42%), Gaps = 46/234 (19%)
Query: 153 NLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNF-LKEVEDAQRIRRNVIESFEKAS 211
N E+F YD L+++ GA AN+ G E + F L+ +ED + I+ F KA+
Sbjct: 95 NRKTNEQFEESYDKLILSPGASANSL---GFESDITFTLRNLEDT-----DAIDQFIKAN 146
Query: 212 LPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFK--LYPKVKDSVKITLLEAA 269
++ ++VG G +E V E+L++ L+P TL+ +
Sbjct: 147 ----------QVDKVLVVGAGYVSLE--------VLENLYERGLHP--------TLIHRS 180
Query: 270 DHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVW 329
D I + D + ++ + I +L + + EI K +G+ Y M++
Sbjct: 181 DKINKLMDADMNQPILDELDKREIPYRLNEEINAINGNEITFK---SGKVEH--YDMIIE 235
Query: 330 STGIAPHAIIKDFMKQVG-QTNRRALATDEWLRVEGSDSIYALGDCATVNQRRV 382
G P++ F++ + +R+ +IYA+GD AT + R V
Sbjct: 236 GVGTHPNS---KFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHV 286
>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2EQ7|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2YQU|A Chain A, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
pdb|2YQU|B Chain B, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
Length = 455
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 74/192 (38%), Gaps = 27/192 (14%)
Query: 202 NVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSV 261
V+ S E S P + KR+ ++VGGG G+E H
Sbjct: 153 RVVTSTEALSFPEVP----KRL---IVVGGGVIGLELGVVWHRL--------------GA 191
Query: 262 KITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSS 321
++ +LE D IL D ++ AE F + G+ ++ G V V + +V G
Sbjct: 192 EVIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPEAKGARVELEG-GEV 250
Query: 322 MPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRA-LATDEWLRVEGSDSIYALGDCA---TV 377
+ V+ + G P+ T+ R + DE LR IYA+GD +
Sbjct: 251 LEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRTR-VPHIYAIGDVVRGPML 309
Query: 378 NQRRVMEDIAAI 389
+ E IAA+
Sbjct: 310 AHKASEEGIAAV 321
>pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQX|B Chain B, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 99/234 (42%), Gaps = 46/234 (19%)
Query: 153 NLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNF-LKEVEDAQRIRRNVIESFEKAS 211
N E+F YD L+++ GA AN+ G E + F L+ +ED + I+ F KA+
Sbjct: 94 NRKTNEQFEESYDKLILSPGASANSL---GFESDITFTLRNLEDT-----DAIDQFIKAN 145
Query: 212 LPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFK--LYPKVKDSVKITLLEAA 269
++ ++VG G +E V E+L++ L+P TL+ +
Sbjct: 146 ----------QVDKVLVVGAGYVSLE--------VLENLYERGLHP--------TLIHRS 179
Query: 270 DHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVW 329
D I + D + ++ + I +L + + EI K +G+ Y M++
Sbjct: 180 DKINKLMDADMNQPILDELDKREIPYRLNEEINAINGNEITFK---SGKVEH--YDMIIE 234
Query: 330 STGIAPHAIIKDFMKQVG-QTNRRALATDEWLRVEGSDSIYALGDCATVNQRRV 382
G P++ F++ + +R+ +IYA+GD AT + R V
Sbjct: 235 GVGTHPNS---KFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHV 285
>pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM3|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM4|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
pdb|4EM4|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
Length = 437
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 99/234 (42%), Gaps = 46/234 (19%)
Query: 153 NLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNF-LKEVEDAQRIRRNVIESFEKAS 211
N E+F YD L+++ GA AN+ G E + F L+ +ED + I+ F KA+
Sbjct: 94 NRKTNEQFEESYDKLILSPGASANSL---GFESDITFTLRNLEDT-----DAIDQFIKAN 145
Query: 212 LPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFK--LYPKVKDSVKITLLEAA 269
++ ++VG G +E V E+L++ L+P TL+ +
Sbjct: 146 ----------QVDKVLVVGAGYVSLE--------VLENLYERGLHP--------TLIHRS 179
Query: 270 DHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVW 329
D I + D + ++ + I +L + + EI K +G+ Y M++
Sbjct: 180 DKINKLMDADMNQPILDELDKREIPYRLNEEINAINGNEITFK---SGKVEH--YDMIIE 234
Query: 330 STGIAPHAIIKDFMKQVG-QTNRRALATDEWLRVEGSDSIYALGDCATVNQRRV 382
G P++ F++ + +R+ +IYA+GD AT + R V
Sbjct: 235 GVGTHPNS---KFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHV 285
>pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
pdb|4EMW|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
Length = 436
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 99/234 (42%), Gaps = 46/234 (19%)
Query: 153 NLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNF-LKEVEDAQRIRRNVIESFEKAS 211
N E+F YD L+++ GA AN+ G E + F L+ +ED + I+ F KA+
Sbjct: 94 NRKTNEQFEESYDKLILSPGASANSL---GFESDITFTLRNLEDT-----DAIDQFIKAN 145
Query: 212 LPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFK--LYPKVKDSVKITLLEAA 269
++ ++VG G +E V E+L++ L+P TL+ +
Sbjct: 146 ----------QVDKVLVVGAGYVSLE--------VLENLYERGLHP--------TLIHRS 179
Query: 270 DHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVW 329
D I + D + ++ + I +L + + EI K +G+ Y M++
Sbjct: 180 DKINKLMDADMNQPILDELDKREIPYRLNEEINAINGNEITFK---SGKVEH--YDMIIE 234
Query: 330 STGIAPHAIIKDFMKQVG-QTNRRALATDEWLRVEGSDSIYALGDCATVNQRRV 382
G P++ F++ + +R+ +IYA+GD AT + R V
Sbjct: 235 GVGTHPNS---KFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHV 285
>pdb|3KLJ|A Chain A, Crystal Structure Of Nadh:rubredoxin Oxidoreductase From
Clostridium Acetobutylicum
Length = 385
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 70/323 (21%), Positives = 118/323 (36%), Gaps = 67/323 (20%)
Query: 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFA-FTPLLPSVTCGTVEARSIVEP 115
K K+++LG G AG S K D+ +I+ Y + P L + I+
Sbjct: 8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIK 67
Query: 116 VRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA 175
+ K N+ + E ID NK V +S + + Y+ L+IA G+ A
Sbjct: 68 KNDWYEKNNIKVITSEFAT-SIDPNNKLVTLKSGEK----------IKYEKLIIASGSIA 116
Query: 176 NTFNTPGVEENCNFLKEVEDAQRIR---RNVIESFEKASLPNLSDEERKRILHFVIVGGG 232
N P +E + L +DA +I+ +N ++F + +I G
Sbjct: 117 NKIKVPHADEIFS-LYSYDDALKIKDECKNKGKAFIIGGG-----ILGIELAQAIIDSGT 170
Query: 233 PTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDG 292
P + E YP LE D+ F ++K R G
Sbjct: 171 PASIGIILE------------YP----------LE------RQLDRDGGLFLKDKLDRLG 202
Query: 293 IDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRR 352
I + S +E+ +R + V+ + G+ P+ DF+K ++R
Sbjct: 203 IKIYTNSNF-----EEMGDLIRSS---------CVITAVGVKPNL---DFIKDTEIASKR 245
Query: 353 ALATDEWLRVEGSDSIYALGDCA 375
+ ++ + D IYA GD A
Sbjct: 246 GILVNDHMETSIKD-IYACGDVA 267
>pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3URH|B Chain B, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 491
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 262 KITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMV---VKVTD--KEIFTKVRGN 316
K+T++E D IL D + + ++ GID KLG+ V VK D K F V+G
Sbjct: 223 KVTVVEFLDTILGGXDGEVAKQLQRXLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKG- 281
Query: 317 GETSSMPYGMVVWSTGIAP 335
GE +++ +V+ +TG P
Sbjct: 282 GEATTLDAEVVLIATGRKP 300
>pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
pdb|2X50|B Chain B, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
Length = 510
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 88/227 (38%), Gaps = 40/227 (17%)
Query: 162 MDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERK 221
+D +Y++IA G+ PG +E C I N E+F P K
Sbjct: 171 LDTEYILIATGSWPTRLGVPG-DEFC-----------ITSN--EAFYLEDAP-------K 209
Query: 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRIT 281
R+L VGGG VEFA +F Y V L D IL FD +
Sbjct: 210 RML---CVGGGYIAVEFAG---------IFNGYKPCGGYVD--LCYRGDLILRGFDTEVR 255
Query: 282 AFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKD 341
++ +GI V+ K+T E + + + Y V+ + G P +
Sbjct: 256 KSLTKQLGANGIRVRTNLNPTKITKNEDGSNHVHFNDGTEEDYDQVMLAIGRVPRSQALQ 315
Query: 342 FMKQVGQTNRR-ALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIA 387
K +T + A+ D + + D+IYA+GD V R ++ +A
Sbjct: 316 LDKAGVRTGKNGAVQVDAYSKTS-VDNIYAIGD---VTNRVMLTPVA 358
>pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2JK6|B Chain B, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2W0H|A Chain A, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2W0H|B Chain B, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2YAU|A Chain A, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|2YAU|B Chain B, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|4ADW|A Chain A, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
pdb|4ADW|B Chain B, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
Length = 511
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 88/227 (38%), Gaps = 40/227 (17%)
Query: 162 MDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERK 221
+D +Y++IA G+ PG +E C I N E+F P K
Sbjct: 171 LDTEYILIATGSWPTRLGVPG-DEFC-----------ITSN--EAFYLEDAP-------K 209
Query: 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRIT 281
R+L VGGG VEFA +F Y V L D IL FD +
Sbjct: 210 RML---CVGGGYIAVEFAG---------IFNGYKPCGGYVD--LCYRGDLILRGFDTEVR 255
Query: 282 AFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKD 341
++ +GI V+ K+T E + + + Y V+ + G P +
Sbjct: 256 KSLTKQLGANGIRVRTNLNPTKITKNEDGSNHVHFNDGTEEDYDQVMLAIGRVPRSQALQ 315
Query: 342 FMKQVGQTNRR-ALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIA 387
K +T + A+ D + + D+IYA+GD V R ++ +A
Sbjct: 316 LDKAGVRTGKNGAVQVDAYSKTS-VDNIYAIGD---VTNRVMLTPVA 358
>pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide
Dehydrogenase Complexed With Nad+ At 2.45 Angstroms
Resolution
Length = 458
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 14/77 (18%)
Query: 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFA 284
H V+VGGG G+E Y K+ +++++EA + IL +D +TA
Sbjct: 173 HLVVVGGGYIGLELGIA------------YRKL--GAQVSVVEARERILPTYDSELTAPV 218
Query: 285 EEKFSRDGIDVKLGSMV 301
E + GI + LG V
Sbjct: 219 AESLKKLGIALHLGHSV 235
>pdb|1XDI|A Chain A, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
Tuberculosis
pdb|1XDI|B Chain B, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
Tuberculosis
Length = 499
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 27/156 (17%)
Query: 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFA 284
H ++VG G TG EF VD Y ++ V +T++ + DH+L D
Sbjct: 184 HLIVVGSGVTGAEF-------VDA-----YTEL--GVPVTVVASQDHVLPYEDADAALVL 229
Query: 285 EEKFSRDGIDV---KLGSMVVKVTDKEIFTKVRGN---GETSSMPYGMVVWSTGIAPHAI 338
EE F+ G+ + + V + + T G G + M G V ++G+
Sbjct: 230 EESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNTSGLG---- 285
Query: 339 IKDFMKQVGQTNRRALATDEWLRVEGSDSIYALGDC 374
++ Q+G+ N L D R + IYA GDC
Sbjct: 286 LERVGIQLGRGNY--LTVDRVSRTLAT-GIYAAGDC 318
>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile
pdb|2R9Z|B Chain B, Glutathione Amide Reductase From Chromatium Gracile
pdb|2RAB|A Chain A, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
pdb|2RAB|B Chain B, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
Length = 463
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 74/189 (39%), Gaps = 31/189 (16%)
Query: 201 RNVIESFEKASLPNLSD------EERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLY 254
R ++ A L SD ++ KR+ I+G G G+E A L F E
Sbjct: 141 RPIVPRLPGAELGITSDGFFALQQQPKRV---AIIGAGYIGIELAGLLRSFGSE------ 191
Query: 255 PKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVR 314
+T++ D +L FD ++A E GI+ L V + T +
Sbjct: 192 --------VTVVALEDRLLFQFDPLLSATLAENMHAQGIETHLEFAVAALERDAQGTTLV 243
Query: 315 GNGETSSMPYGMVVWSTGIAPHAIIKDF-MKQVG---QTNRRALATDEWLRVEGSDSIYA 370
T + V+W+ G AP+ +D ++ G Q+N + TD + +YA
Sbjct: 244 AQDGTRLEGFDSVIWAVGRAPNT--RDLGLEAAGIEVQSNGM-VPTDAYQNTN-VPGVYA 299
Query: 371 LGDCATVNQ 379
LGD +Q
Sbjct: 300 LGDITGRDQ 308
>pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The
Yeast Saccharomyces Cerevisiae
pdb|2HQM|B Chain B, Crystal Structure Of Glutathione Reductase Glr1 From The
Yeast Saccharomyces Cerevisiae
Length = 479
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 66/163 (40%), Gaps = 26/163 (15%)
Query: 217 DEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMF 276
+E+ K++ V+VG G G+E A H E L+ + +L F
Sbjct: 182 EEQPKKV---VVVGAGYIGIELAGVFHGLGSE--------------THLVIRGETVLRKF 224
Query: 277 DKRITAFAEEKFSRDGIDVKLGSMVVKV-----TDKEIFTKVRGNGETSSMPYGMVVWST 331
D+ I + + ++GI+V S +VKV TDK K+ N S ++W+
Sbjct: 225 DECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDK---LKIHMNDSKSIDDVDELIWTI 281
Query: 332 GIAPHAIIKDFMKQVGQTNRRALATDEWLRVEGSDSIYALGDC 374
G H + + + + DE+ +IY+LGD
Sbjct: 282 GRKSHLGMGSENVGIKLNSHDQIIADEYQNTN-VPNIYSLGDV 323
>pdb|3QRX|A Chain A, Chlamydomonas Reinhardtii Centrin Bound To Melittin
Length = 169
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 374 CATVNQRRVMEDIAAIFSKADKDNSGTLTVKEFQEVIKDICERYPQVEL 422
A + +R E+I F D DNSGT+T+K+ + V K++ E + EL
Sbjct: 91 TAKMGERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEEL 139
>pdb|2B1U|A Chain A, Solution Structure Of Calmodulin-Like Skin Protein C
Terminal Domain
Length = 71
Score = 35.0 bits (79), Expect = 0.091, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 13/82 (15%)
Query: 380 RRVMEDIAAIFSKADKDNSGTLTVKEFQEVIKDICERYPQVELYLKNKKMGDFGDLLKEA 439
R +ED+ F D+D G +TV E + + + + PQ EL +++EA
Sbjct: 2 RAGLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEEL----------DAMIREA 51
Query: 440 KGDVAQDAVELNIEEFKKALSE 461
DV QD +N EEF + L++
Sbjct: 52 --DVDQDG-RVNYEEFARMLAQ 70
>pdb|1FEA|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|C Chain C, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|D Chain D, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEB|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEB|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEC|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
pdb|1FEC|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
Length = 490
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 70/172 (40%), Gaps = 19/172 (11%)
Query: 217 DEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMF 276
DE KR L VGGG +EFA +F Y K + ++ L D IL F
Sbjct: 184 DEAPKRAL---CVGGGYISIEFAG---------IFNAY-KARGG-QVDLAYRGDMILRGF 229
Query: 277 DKRITAFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPH 336
D + E+ +GI+V+ KVT T+ + Y +V+ + G P
Sbjct: 230 DSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPR 289
Query: 337 AIIKDFMKQ-VGQTNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIA 387
+ K V A+ D + + D+IYA+GD V R ++ +A
Sbjct: 290 SQTLQLEKAGVEVAKNGAIKVDAYSKTN-VDNIYAIGD---VTDRVMLTPVA 337
>pdb|2TPR|A Chain A, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
pdb|2TPR|B Chain B, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
Length = 490
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 70/172 (40%), Gaps = 19/172 (11%)
Query: 217 DEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMF 276
DE KR L VGGG +EFA +F Y K + ++ L D IL F
Sbjct: 184 DEAPKRAL---CVGGGYISIEFAG---------IFNAY-KARGG-QVDLAYRGDMILRGF 229
Query: 277 DKRITAFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPH 336
D + E+ +GI+V+ KVT T+ + Y +V+ + G P
Sbjct: 230 DSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPR 289
Query: 337 AIIKDFMKQ-VGQTNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIA 387
+ K V A+ D + + D+IYA+GD V R ++ +A
Sbjct: 290 SQTLQLEKAGVEVAKNGAIKVDAYSKTN-VDNIYAIGD---VTDRVMLTPVA 337
>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BC1|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BCP|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
pdb|2BCP|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
Length = 490
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 84/225 (37%), Gaps = 43/225 (19%)
Query: 164 YDYLVIAMGARANTFNTPGVE---ENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEER 220
YD L+ A G++ G E + F +E+ Q ++ + S ++ E
Sbjct: 138 YDKLIFATGSQPILPPIKGAEIKEGSLEFEATLENLQFVK------LYQNSADVIAKLEN 191
Query: 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-NMFDKR 279
K I +VG G GVE A + ++ L++ D L +D+
Sbjct: 192 KDIKRVAVVGAGYIGVELAEAFQ--------------RKGKEVVLIDVVDTCLAGYYDRD 237
Query: 280 ITAFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSM-------PYGMVVWSTG 332
+T + GI + G E +V GNG+ + MV+ + G
Sbjct: 238 LTDLMAKNMEEHGIQLAFG---------ETVKEVAGNGKVEKIITDKNEYDVDMVILAVG 288
Query: 333 IAPHAIIKDFMKQVGQTNRRALATDEWLRVEGSDSIYALGDCATV 377
P+ + + + + + + + G +YA+GDCAT+
Sbjct: 289 FRPNTTLGNGKIDLFRNGAFLVNKRQETSIPG---VYAIGDCATI 330
>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
pdb|2BC0|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
Length = 490
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 84/225 (37%), Gaps = 43/225 (19%)
Query: 164 YDYLVIAMGARANTFNTPGVE---ENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEER 220
YD L+ A G++ G E + F +E+ Q ++ + S ++ E
Sbjct: 138 YDKLIFATGSQPILPPIKGAEIKEGSLEFEATLENLQFVK------LYQNSADVIAKLEN 191
Query: 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-NMFDKR 279
K I +VG G GVE A + ++ L++ D L +D+
Sbjct: 192 KDIKRVAVVGAGYIGVELAEAFQ--------------RKGKEVVLIDVVDTCLAGYYDRD 237
Query: 280 ITAFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSM-------PYGMVVWSTG 332
+T + GI + G E +V GNG+ + MV+ + G
Sbjct: 238 LTDLMAKNMEEHGIQLAFG---------ETVKEVAGNGKVEKIITDKNEYDVDMVILAVG 288
Query: 333 IAPHAIIKDFMKQVGQTNRRALATDEWLRVEGSDSIYALGDCATV 377
P+ + + + + + + + G +YA+GDCAT+
Sbjct: 289 FRPNTTLGNGKIDLFRNGAFLVNKRQETSIPG---VYAIGDCATI 330
>pdb|1TYT|A Chain A, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
pdb|1TYT|B Chain B, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
Length = 487
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 70/172 (40%), Gaps = 19/172 (11%)
Query: 217 DEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMF 276
DE KR L VGGG +EFA +F Y K + ++ L D IL F
Sbjct: 185 DEAPKRAL---CVGGGYISIEFAG---------IFNAY-KARGG-QVDLAYRGDMILRGF 230
Query: 277 DKRITAFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPH 336
D + E+ +GI+V+ KVT T+ + Y +V+ + G P
Sbjct: 231 DSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPR 290
Query: 337 AIIKDFMKQ-VGQTNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIA 387
+ K V A+ D + + D+IYA+GD V R ++ +A
Sbjct: 291 SQTLQLDKAGVEVAKNGAIKVDAYSKTN-VDNIYAIGD---VTDRVMLTPVA 338
>pdb|2O01|H Chain H, The Structure Of A Plant Photosystem I Supercomplex At
3.4 Angstrom Resolution
Length = 75
Score = 33.9 bits (76), Expect = 0.25, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 6 FYERVSRAFHDYSSLSKLIVISTVGGGSLIAYSEANASSDAYSVA-----PPEMGIKKK 59
F+E + F L K +++ GGGSL+ Y ANA D + PP++G + K
Sbjct: 19 FFETFAAPFTKRGLLLKFLIL---GGGSLLTYVSANAPQDVLPITRGPQQPPKLGPRGK 74
>pdb|1OQP|A Chain A, Structure Of The Ca2+C-Terminal Domain Of Caltractin In
Complex With The Cdc31p-Binding Domain From Kar1p
Length = 77
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 379 QRRVMEDIAAIFSKADKDNSGTLTVKEFQEVIKDICERYPQVEL 422
+R E+I F D DNSGT+T+K+ + V K++ E + EL
Sbjct: 4 ERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEEL 47
>pdb|1TYP|A Chain A, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
pdb|1TYP|B Chain B, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
Length = 487
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 70/172 (40%), Gaps = 19/172 (11%)
Query: 217 DEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMF 276
DE KR L VGGG +EFA +F Y K + ++ L D IL F
Sbjct: 185 DEAPKRAL---CVGGGYISIEFAG---------IFNAY-KARGG-QVDLAYRGDMILRGF 230
Query: 277 DKRITAFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPH 336
D + E+ +GI+V+ KVT T+ + Y +V+ + G P
Sbjct: 231 DSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPR 290
Query: 337 AIIKDFMKQ-VGQTNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIA 387
+ K V A+ D + + D+IYA+GD V R ++ +A
Sbjct: 291 SQTLQLDKAGVEVAKNGAIKVDAYSKTN-VDNIYAIGD---VTDRVMLTPVA 338
>pdb|2WSC|H Chain H, Improved Model Of Plant Photosystem I
pdb|2WSE|H Chain H, Improved Model Of Plant Photosystem I
pdb|2WSF|H Chain H, Improved Model Of Plant Photosystem I
Length = 144
Score = 33.9 bits (76), Expect = 0.25, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 6 FYERVSRAFHDYSSLSKLIVISTVGGGSLIAYSEANASSDAYSVA-----PPEMGIKKK 59
F+E + F L K +++ GGGSL+ Y ANA D + PP++G + K
Sbjct: 88 FFETFAAPFTKRGLLLKFLIL---GGGSLLTYVSANAPQDVLPITRGPQQPPKLGPRGK 143
>pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
Length = 408
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 69/327 (21%), Positives = 111/327 (33%), Gaps = 71/327 (21%)
Query: 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVR 117
K VVVLG G A SF+ L Y + TV P
Sbjct: 7 KAPVVVLGAGLASVSFVAELRQAGYQGLI-------------------TVVGDEAERPYD 47
Query: 118 NIVRKKNVDICFWEAECFKIDAENKK-------VYCRS--SQNTNLNGKEEFCMDYDYLV 168
K+ + +AE ++D + V +S Q + + + Y LV
Sbjct: 48 RPPLSKDF-MAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLV 106
Query: 169 IAMGARANTFNT-PGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFV 227
+A GA T G + L+ +EDA+RI+ + + R+L
Sbjct: 107 LATGAAPRALPTLQGATMPVHTLRTLEDARRIQAGL--------------RPQSRLL--- 149
Query: 228 IVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITA-FAEE 286
IVGGG G+E AA V ++L+E +++ A F
Sbjct: 150 IVGGGVIGLELAATAR--------------TAGVHVSLVETQPRLMSRAAPATLADFVAR 195
Query: 287 KFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQV 346
+ G+D++ V D + + + + MVV G+ + +
Sbjct: 196 YHAAQGVDLRFERSVTGSVDGVVLLD-----DGTRIAADMVVVGIGVLAN---DALARAA 247
Query: 347 GQTNRRALATDEWLRVEGSDSIYALGD 373
G + D + R D +YALGD
Sbjct: 248 GLACDDGIFVDAYGRTTCPD-VYALGD 273
>pdb|3OC4|A Chain A, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
pdb|3OC4|B Chain B, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
Length = 452
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 65/338 (19%), Positives = 134/338 (39%), Gaps = 56/338 (16%)
Query: 60 KVVVLGTGWAGTS--FLKNLNNPSYDVQVISPRNYFAF-TPLLPSVTCGTV----EARSI 112
K+V++G +AG S P ++ +I + + + L + T+ EAR I
Sbjct: 4 KIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYI 63
Query: 113 VEPVRNIVRKKNVDICFWEAECFKIDAENKKV-YCRSSQNTNLNGKEEFCMDYDYLVIAM 171
E +R++ + + E D EN+ + + R +E+ YD L++A
Sbjct: 64 TEEE---LRRQKIQLLL-NREVVAXDVENQLIAWTRK--------EEQQWYSYDKLILAT 111
Query: 172 GARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGG 231
GA + G + +++ + S A++P L + + ++G
Sbjct: 112 GASQFSTQIRGSQ-----------TEKLLKYKFLSGALAAVPLLENSQT-----VAVIGA 155
Query: 232 GPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-NMFDKRITAFAEEKFSR 290
GP G E DF+ VK + + E+ +++L FDK A ++ +
Sbjct: 156 GPIGXEAI----DFL----------VKXKKTVHVFESLENLLPKYFDKEXVAEVQKSLEK 201
Query: 291 DGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTN 350
+ V+ + + + + + S G +++ + P D K++ +
Sbjct: 202 QAVIFHFEETVLGIEETANGIVLETSEQEISCDSG--IFALNLHPQLAYLD--KKIQRNL 257
Query: 351 RRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAA 388
+ +A D +L+ +++A+GDC +V V E A
Sbjct: 258 DQTIAVDAYLQT-SVPNVFAIGDCISVXNEPVAETFYA 294
>pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase,
Bpha4
pdb|1F3P|A Chain A, Ferredoxin Reductase (Bpha4)-Nadh Complex
pdb|2GQW|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2GR0|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (oxidized
Form, Nad+ Complex)
pdb|2GR1|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Hydroquinone)
pdb|2GR2|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2YVF|A Chain A, Crystal Structure Of Ferredoxin Reductase Bpha4
(Hydroquinone)
pdb|2YVG|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Blue-Semiquinone)
pdb|2YVJ|A Chain A, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
pdb|2YVJ|P Chain P, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
Length = 408
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 69/327 (21%), Positives = 111/327 (33%), Gaps = 71/327 (21%)
Query: 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVR 117
K VVVLG G A SF+ L Y + TV P
Sbjct: 7 KAPVVVLGAGLASVSFVAELRQAGYQGLI-------------------TVVGDEAERPYD 47
Query: 118 NIVRKKNVDICFWEAECFKIDAENKK-------VYCRS--SQNTNLNGKEEFCMDYDYLV 168
K+ + +AE ++D + V +S Q + + + Y LV
Sbjct: 48 RPPLSKDF-MAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLV 106
Query: 169 IAMGARANTFNT-PGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFV 227
+A GA T G + L+ +EDA+RI+ + + R+L
Sbjct: 107 LATGAAPRALPTLQGATMPVHTLRTLEDARRIQAGL--------------RPQSRLL--- 149
Query: 228 IVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITA-FAEE 286
IVGGG G+E AA V ++L+E +++ A F
Sbjct: 150 IVGGGVIGLELAATAR--------------TAGVHVSLVETQPRLMSRAAPATLADFVAR 195
Query: 287 KFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQV 346
+ G+D++ V D + + + + MVV G+ + +
Sbjct: 196 YHAAQGVDLRFERSVTGSVDGVVLLD-----DGTRIAADMVVVGIGVLAN---DALARAA 247
Query: 347 GQTNRRALATDEWLRVEGSDSIYALGD 373
G + D + R D +YALGD
Sbjct: 248 GLACDDGIFVDAYGRTTCPD-VYALGD 273
>pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GES|B Chain B, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 56/265 (21%), Positives = 95/265 (35%), Gaps = 71/265 (26%)
Query: 118 NIVRKKNVDIC-----FWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMG 172
N++ K NVD+ F +A+ +++ E + D+++IA G
Sbjct: 101 NVLGKNNVDVIKGFARFVDAKTLEVNGET--------------------ITADHILIATG 140
Query: 173 ARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGG 232
R + + PGVE I+S +LP L + +VG G
Sbjct: 141 GRPSHPDIPGVEYG-----------------IDSDGFFALPALPER-------VAVVGAG 176
Query: 233 PTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDG 292
GVE ++ K L E D L FD I+ E + +G
Sbjct: 177 YIGVELGGVINGL--------------GAKTHLFEMFDAPLPSFDPMISETLVEVMNAEG 222
Query: 293 IDVKLGSM---VVKVTDKEIFTKVR-GNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ 348
+ ++ VVK TD + ++ G ET ++W+ G P + +
Sbjct: 223 PQLHTNAIPKAVVKNTDGSLTLELEDGRSETVD----CLIWAIGREPANDNINLEAAGVK 278
Query: 349 TNRRALATDEWLRVEGSDSIYALGD 373
TN + + + + IYA+GD
Sbjct: 279 TNEKGYIVVDKYQNTNIEGIYAVGD 303
>pdb|2V3A|A Chain A, Crystal Structure Of Rubredoxin Reductase From Pseudomonas
Aeruginosa.
pdb|2V3B|A Chain A, Crystal Structure Of The Electron Transfer Complex
Rubredoxin - Rubredoxin Reductase From Pseudomonas
Aeruginosa
Length = 384
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 90/229 (39%), Gaps = 48/229 (20%)
Query: 156 GKEEFCMDYDYLVIAMGARANTFNTPGVEENCNF-LKEVEDAQRIRRNVIESFEKASLPN 214
G+EE + Y LV+A GA G ++ + + ++ED R R+
Sbjct: 96 GEEE--VRYRDLVLAWGAEPIRVPVEGDAQDALYPINDLEDYARFRQ------------- 140
Query: 215 LSDEERKRILHFVIVGGGPTGVEFAAELHDF-----VDEDLFKLYPKVKDSVKITLLEAA 269
+ ++R+L ++G G G EFA +L V ++ P + ++A
Sbjct: 141 -AAAGKRRVL---LLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAG 196
Query: 270 DHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVW 329
L + A K + +G++ L +D E+ +P +VV
Sbjct: 197 LEGLGVRFHLGPVLASLKKAGEGLEAHL-------SDGEV------------IPCDLVVS 237
Query: 330 STGIAPHAIIKDFMKQVGQTNRRALATDEWLRVEGSDSIYALGDCATVN 378
+ G+ P + G R + D LR ++ IYALGDCA V+
Sbjct: 238 AVGLRPR---TELAFAAGLAVNRGIVVDRSLRTSHAN-IYALGDCAEVD 282
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISP 89
K++V++LG G G F +L++ Y + V++P
Sbjct: 145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAP 176
>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein
pdb|1EMS|B Chain B, Crystal Structure Of The C. Elegans Nitfhit Protein
Length = 440
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 13/114 (11%)
Query: 321 SMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEWLRVEGSDSIYALGDCATVNQR 380
++P + +ST PH+ + +K V T+ L + + + +D L D T +
Sbjct: 305 NIPADHIFYST---PHSFVFVNLKPV--TDGHVLVSPKRVVPRLTD----LTDAETADLF 355
Query: 381 RVMEDIAAIFSKADKDNSGTLTVKEFQEVIKDICERYPQVELYLKNKKMGDFGD 434
V + + A+ K S T+ V++ KD + P V +++ ++ GDFGD
Sbjct: 356 IVAKKVQAMLEKHHNVTSTTICVQDG----KDAGQTVPHVHIHILPRRAGDFGD 405
>pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|B Chain B, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|C Chain C, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|D Chain D, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOV|A Chain A, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|B Chain B, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|C Chain C, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|D Chain D, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOW|A Chain A, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|B Chain B, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|C Chain C, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|D Chain D, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WP5|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP6|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WPC|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPE|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPF|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
Length = 495
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 91/229 (39%), Gaps = 44/229 (19%)
Query: 162 MDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERK 221
+ D++++A G+ PG+E + I S E LP E +
Sbjct: 154 LQADHILLATGSWPQMPAIPGIE-----------------HCISSNEAFYLP----EPPR 192
Query: 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRIT 281
R+L VGGG VEFA +F Y K+TL + IL FD+ I
Sbjct: 193 RVL---TVGGGFISVEFAG---------IFNAYKP--PGGKVTLCYRNNLILRGFDETIR 238
Query: 282 AFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKD 341
++ + +GI++ KV+ +K ++ +V+ + G P D
Sbjct: 239 EEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRT--ND 296
Query: 342 F-MKQVG--QTNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIA 387
+ VG T + + DE+ R +IYA+GD + R ++ +A
Sbjct: 297 LQLGNVGVKLTPKGGVQVDEFSRTN-VPNIYAIGD---ITDRLMLTPVA 341
>pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei
pdb|2WBA|B Chain B, Properties Of Trypanothione Reductase From T. Brucei
Length = 492
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 91/229 (39%), Gaps = 44/229 (19%)
Query: 162 MDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERK 221
+ D++++A G+ PG+E + I S E LP E +
Sbjct: 151 LQADHILLATGSWPQMPAIPGIE-----------------HCISSNEAFYLP----EPPR 189
Query: 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRIT 281
R+L VGGG VEFA +F Y K+TL + IL FD+ I
Sbjct: 190 RVL---TVGGGFISVEFAG---------IFNAYKP--PGGKVTLCYRNNLILRGFDETIR 235
Query: 282 AFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKD 341
++ + +GI++ KV+ +K ++ +V+ + G P D
Sbjct: 236 EEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRT--ND 293
Query: 342 F-MKQVG--QTNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIA 387
+ VG T + + DE+ R +IYA+GD + R ++ +A
Sbjct: 294 LQLGNVGVKLTPKGGVQVDEFSRTN-VPNIYAIGD---ITDRLMLTPVA 338
>pdb|3ZVI|A Chain A, Methylaspartate Ammonia Lyase From Clostridium
Tetanomorphum Mutant L384a
pdb|3ZVI|B Chain B, Methylaspartate Ammonia Lyase From Clostridium
Tetanomorphum Mutant L384a
Length = 438
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 13/65 (20%)
Query: 326 MVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMED 385
M++ + PHA+I + +++G + L +WLR D I L RV ED
Sbjct: 184 MIIKEADVLPHALINNVEEKLGLKGEKLLEYVKWLR----DRIIKL---------RVRED 230
Query: 386 IAAIF 390
A IF
Sbjct: 231 YAPIF 235
>pdb|3ZVH|A Chain A, Methylaspartate Ammonia Lyase From Clostridium
Tetanomorphum Mutant Q73a
pdb|3ZVH|B Chain B, Methylaspartate Ammonia Lyase From Clostridium
Tetanomorphum Mutant Q73a
Length = 438
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 13/65 (20%)
Query: 326 MVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMED 385
M++ + PHA+I + +++G + L +WLR D I L RV ED
Sbjct: 184 MIIKEADVLPHALINNVEEKLGLKGEKLLEYVKWLR----DRIIKL---------RVRED 230
Query: 386 IAAIF 390
A IF
Sbjct: 231 YAPIF 235
>pdb|1KCZ|A Chain A, Crystal Structure Of Beta-Methylaspartase From Clostridium
Tetanomorphum. Mg-Complex.
pdb|1KCZ|B Chain B, Crystal Structure Of Beta-Methylaspartase From Clostridium
Tetanomorphum. Mg-Complex
Length = 413
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 13/65 (20%)
Query: 326 MVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMED 385
M++ + PHA+I + +++G + L +WLR D I L RV ED
Sbjct: 184 MIIKEADVLPHALINNVEEKLGLKGEKLLEYVKWLR----DRIIKL---------RVRED 230
Query: 386 IAAIF 390
A IF
Sbjct: 231 YAPIF 235
>pdb|2G9B|A Chain A, Nmr Solution Structure Of Ca2+-Loaded Calbindin D28k
pdb|2F33|A Chain A, Nmr Solution Structure Of Ca2+-Loaded Calbindin D28k
Length = 263
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 332 GIAPHAIIKDFMKQVGQTNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFS 391
G+ +K F+ Q GQ + + E V ++ + L Q + E+ +
Sbjct: 53 GLELSPEMKTFVDQYGQRDDGKIGIVELAHVLPTEENFLL--LFRCQQLKSCEEFMKTWR 110
Query: 392 KADKDNSGTLTVKEFQEVIKDICERYPQVELYLKNKKMGDFGDLL 436
K D D+SG + +E + +KD+ E+ + + + K+ ++ DL+
Sbjct: 111 KYDTDHSGFIETEELKNFLKDLLEKANKT---VDDTKLAEYTDLM 152
>pdb|4B63|A Chain A, A. Fumigatus Ornithine Hydroxylase (Sida) Bound To Nadp
And Ornithine
pdb|4B64|A Chain A, A. Fumigatus Ornithine Hydroxylase (Sida) Bound To Nadp
And Lysine
pdb|4B65|A Chain A, A. Fumigatus Ornithine Hydroxylase (Sida), Reduced State
Bound To Nadp(H)
pdb|4B66|A Chain A, A. Fumigatus Ornithine Hydroxylase (Sida), Reduced State
Bound To Nadp And Arg
pdb|4B67|A Chain A, A. Fumigatus Ornithine Hydroxylase (Sida), Re-Oxidised
State Bound To Nadp And Ornithine
pdb|4B68|A Chain A, A. Fumigatus Ornithine Hydroxylase (Sida), Re-Oxidised
State Bound To Nadp And Arg
pdb|4B69|A Chain A, A. Fumigatus Ornithine Hydroxylase (Sida) Bound To
Ornithine
Length = 501
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 23/55 (41%)
Query: 213 PNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLE 267
P L + + + VG GP + A LHD +D L K + KI LE
Sbjct: 29 PRLRSTPQDELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLE 83
>pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
pdb|3LAD|B Chain B, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
Length = 476
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 262 KITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMV--VKVTDKEIFTK-VRGNGE 318
++T+LEA D L D+++ A++ ++ G+ + LG+ V +V +K++ K V GE
Sbjct: 205 EVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGE 264
Query: 319 TS 320
S
Sbjct: 265 KS 266
>pdb|2ZYA|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate
pdb|2ZYA|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate
pdb|2ZYD|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
pdb|2ZYD|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
Length = 480
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
Query: 385 DIAAIFSKADKDNSGTLTVKEFQEVIKDICERYPQVELYLKNKKMGDFGDLLKEAKGDVA 444
+IA IF +G + +F + I D C PQ+ L D ++A DV
Sbjct: 367 EIAKIF------RAGCIIRAQFLQKITDACAENPQIANLLLAPYFKQIADDYQQALRDVV 420
Query: 445 QDAVE--LNIEEFKKALSEVDSQMKNLPATAQVAAQQGKYLAKCFNRMEE 492
AV+ + + F A++ DS + + AQ+ + A + R+++
Sbjct: 421 AYAVQNGIPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDK 470
>pdb|4F0H|B Chain B, Unactivated Rubisco With Oxygen Bound
pdb|4F0K|B Chain B, Unactivated Rubisco With Magnesium And Carbon Dioxide
Bound
pdb|4F0M|B Chain B, Unactivated Rubisco With Magnesium And A Water Molecule
Bound
Length = 138
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 10/125 (8%)
Query: 212 LPNLSDEERKRILHFVIVGGGPTGVEFAAELH---DFVDEDLFKLYPKVKDSVKITL-LE 267
LP+L+DE+ K+ + ++I G+E+ ++H F + L+ +V D + +
Sbjct: 11 LPDLTDEQIKKQIDYMISKKLAIGIEYTNDIHPRNSFWEMWGLPLF-EVTDPAPVLFEIN 69
Query: 268 AADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDKEI-FTKVRGNGETSSMPYGM 326
A + F ++ F+ E+ GI+ + S +V E F +R ++ S+ Y +
Sbjct: 70 ACRKAKSNFYIKVVGFSSER----GIESTIISFIVNRPKHEPGFNLIRQEDKSRSIKYSI 125
Query: 327 VVWST 331
+ T
Sbjct: 126 QAYET 130
>pdb|1PCL|A Chain A, Unusual Structural Features In The Parallel Beta-Helix In
Pectate Lyases
Length = 355
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 441 GDVAQDAVEL-NIEEFKKALSEVDSQMKNLPATAQVAAQQGK 481
G A AVE+ NI +FKKAL+ DS K + T + GK
Sbjct: 21 GAKAAKAVEVKNISDFKKALNGTDSSAKIIKVTGPIDISGGK 62
>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
pdb|1LPF|B Chain B, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
Length = 477
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 262 KITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVV--KVTDKEI-FTKVRGNGE 318
++T+LEA D L D++I A + ++ G++++LG+ V +V K++ T NGE
Sbjct: 205 EVTVLEALDKFLPAADEQIAKEALKVLTKQGLNIRLGARVTASEVKKKQVTVTFTDANGE 264
>pdb|1S6I|A Chain A, Ca2+-Regulatory Region (Cld) From Soybean
Calcium-Dependent Protein Kinase-Alpha (Cdpk) In The
Presence Of Ca2+ And The Junction Domain (Jd)
Length = 188
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 374 CATV--NQRRVMEDIAAIFSKADKDNSGTLTVKEFQEVIKD 412
ATV N+ E++ + FS DKD SG +T+ E Q+ KD
Sbjct: 70 AATVHLNKLEREENLVSAFSYFDKDGSGYITLDEIQQACKD 110
>pdb|3KD9|A Chain A, Crystal Structure Of Pyridine Nucleotide Disulfide
Oxidoreductase From Pyrococcus Horikoshii
pdb|3KD9|B Chain B, Crystal Structure Of Pyridine Nucleotide Disulfide
Oxidoreductase From Pyrococcus Horikoshii
pdb|3KD9|C Chain C, Crystal Structure Of Pyridine Nucleotide Disulfide
Oxidoreductase From Pyrococcus Horikoshii
Length = 449
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 76/365 (20%), Positives = 135/365 (36%), Gaps = 78/365 (21%)
Query: 80 PSYDVQVISPRNYFAFTPL-LPSVTCG-TVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137
P +DV+V + + P +P V G + + + P ++K+ +D+ AE ++
Sbjct: 27 PEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHL-NAEVIEV 85
Query: 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVE-DA 196
D Y R +N E ++DYLV A GA GV F ++ DA
Sbjct: 86 DTG----YVRVRENGG-----EKSYEWDYLVFANGASPQVPAIEGVNLKGVFTADLPPDA 136
Query: 197 QRIRR--------NVIESFEKASLPNLSDE--ERKRILHFVIVGGGPTGVEFAAELHDFV 246
IR NV+ +++ + + + ++ G F E+ D +
Sbjct: 137 LAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDIL 196
Query: 247 DEDLFKLYPKVKDSVKITLLEAADHILN--MFDKRITAFAEEKFSRDGIDVKLGSMVVKV 304
+E K+K V + L E I +K +T E K
Sbjct: 197 EE-------KLKKHVNLRLQEITMKIEGEERVEKVVTDAGEYKAE--------------- 234
Query: 305 TDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHA-IIKDFMKQVGQTNRRALATDEWLRVE 363
+V+ +TGI P+ + K ++G+T A+ T+E ++
Sbjct: 235 ---------------------LVILATGIKPNIELAKQLGVRIGETG--AIWTNEKMQTS 271
Query: 364 GSDSIYALGDCA----TVNQRRVMEDIAAIFSKADKDNSGTLTVKE--FQEVIKDICERY 417
+++YA GD A + RRV +A +K + KE F V+ ++
Sbjct: 272 -VENVYAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIAGKELHFPGVLGTAVTKF 330
Query: 418 PQVEL 422
VE+
Sbjct: 331 MDVEI 335
>pdb|3SG5|A Chain A, Crystal Structure Of Dimeric Gcamp3-D380y, Qp(Linker 1),
Lp(Linker 2)
Length = 448
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 369 YALGDCATVNQRRVMEDIAAIFSKADKDNSGTLTVKEFQEVIKDICERYPQVEL 422
Y L D T Q + + FS DKD GT+T KE V++ + + + EL
Sbjct: 298 YNLPDQLTEEQ---IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL 348
>pdb|3SG4|A Chain A, Crystal Structure Of Gcamp3-D380y, Lp(Linker 2)
Length = 448
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 369 YALGDCATVNQRRVMEDIAAIFSKADKDNSGTLTVKEFQEVIKDICERYPQVEL 422
Y L D T Q + + FS DKD GT+T KE V++ + + + EL
Sbjct: 298 YNLPDQLTEEQ---IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL 348
>pdb|3U0K|A Chain A, Crystal Structure Of The Genetically Encoded Calcium
Indicator Rcamp
Length = 440
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 390 FSKADKDNSGTLTVKEFQEVIKDICERYPQVEL 422
FS DKD GT+T KE V++ + + + EL
Sbjct: 308 FSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL 340
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 27/161 (16%)
Query: 228 IVGGGPTGVEFAAELHDFVDE-DLFKLYPKVK-DSV---KITLLEAADHILNMFDKRITA 282
++GGG +GVE A +L V+ L + P++K D V K+ L+ D ILN +
Sbjct: 360 VIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKVRSLKNVDIILNAQTTEVKG 419
Query: 283 FAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDF 342
GS VV + ++ R +G+ S+ + G+ P+ +
Sbjct: 420 D--------------GSKVVGLEYRD-----RVSGDIHSVALAGIFVQIGLLPNT---HW 457
Query: 343 MKQVGQTNRRALATDEWLRVEGSDSIYALGDCATVNQRRVM 383
++ + NR + ++A GDC TV ++++
Sbjct: 458 LEGALERNRMGEIIIDAKCETSVKGVFAAGDCTTVPYKQII 498
>pdb|3SG2|A Chain A, Crystal Structure Of Gcamp2-T116v,D381y
Length = 449
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 64/147 (43%), Gaps = 24/147 (16%)
Query: 315 GNGETSSMPYGMVVWSTGIAP-HAIIKDFMKQVGQTNRRALATDEWLRVEGSDSIYALGD 373
G+G ++ G V+ S G P A ++D + +V + E+L + Y +
Sbjct: 324 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKYTDSE 383
Query: 374 CATVNQRRVMEDIAAIFSKADKDNSGTLTVKEFQEVIKDICERYPQVELYLKNKKMGDFG 433
E+I F DKD +G ++ E + V+ ++ E+ E+
Sbjct: 384 ----------EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEV----------D 423
Query: 434 DLLKEAKGDVAQDAVELNIEEFKKALS 460
++++EA D+ D ++N EEF + ++
Sbjct: 424 EMIREA--DIDGDG-QVNYEEFVQMMT 447
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 390 FSKADKDNSGTLTVKEFQEVIKDICERYPQVEL 422
FS DKD GT+T KE V++ + + + EL
Sbjct: 317 FSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL 349
>pdb|3EKH|A Chain A, Calcium-Saturated Gcamp2 T116vK378W MUTANT MONOMER
Length = 449
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 390 FSKADKDNSGTLTVKEFQEVIKDICERYPQVEL 422
FS DKD GT+T KE V++ + + + EL
Sbjct: 317 FSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL 349
>pdb|3SG6|A Chain A, Crystal Structure Of Dimeric Gcamp2-Lia(Linker 1)
Length = 450
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 390 FSKADKDNSGTLTVKEFQEVIKDICERYPQVEL 422
FS DKD GT+T KE V++ + + + EL
Sbjct: 318 FSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL 350
>pdb|1MF8|B Chain B, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
Length = 170
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 364 GSDSIYALGDCATVNQRRVMEDIAAIFSKADKDNSGTLTVKEF 406
G+++ Y L C+ + + + F K D DNSG+L+V+EF
Sbjct: 2 GNEASYPLEMCSHFDADEIKR-LGKRFKKLDLDNSGSLSVEEF 43
>pdb|3TN7|A Chain A, Crystal Structure Of Short-Chain Alcohol Dehydrogenase
From Hyperthermophilic Archaeon Thermococcus Sibiricus
Complexed With 5- Hydroxy-Nadp
pdb|3TN7|B Chain B, Crystal Structure Of Short-Chain Alcohol Dehydrogenase
From Hyperthermophilic Archaeon Thermococcus Sibiricus
Complexed With 5- Hydroxy-Nadp
Length = 257
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 337 AIIKDFMKQVGQTNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKADKD 396
A+I + +G+ RALA D + G+ S+ L A +M++ D
Sbjct: 27 AVITGASRGIGEAIARALARDGYALALGARSVDRLEKIA----HELMQEQGVEVFYHHLD 82
Query: 397 NSGTLTVKEFQEVIKDICERYPQVELYLKNKKMGDFGDL 435
S +V+EF K + ER+ V++ + N +G F L
Sbjct: 83 VSKAESVEEFS---KKVLERFGDVDVVVANAGLGYFKRL 118
>pdb|1TCO|B Chain B, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
pdb|1AUI|B Chain B, Human Calcineurin Heterodimer
pdb|1M63|B Chain B, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|F Chain F, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
Length = 169
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 364 GSDSIYALGDCATVNQRRVMEDIAAIFSKADKDNSGTLTVKEF 406
G+++ Y L C+ + + + F K D DNSG+L+V+EF
Sbjct: 1 GNEASYPLEMCSHFDADEIKR-LGKRFKKLDLDNSGSLSVEEF 42
>pdb|3EVU|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2, (#1)
pdb|3EVV|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2 (#2)
pdb|3EK4|A Chain A, Calcium-Saturated Gcamp2 Monomer
pdb|3EK7|A Chain A, Calcium-Saturated Gcamp2 Dimer
Length = 449
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 390 FSKADKDNSGTLTVKEFQEVIKDICERYPQVEL 422
FS DKD GT+T KE V++ + + + EL
Sbjct: 317 FSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL 349
>pdb|2AAQ|A Chain A, Crystal Structure Analysis Of The Human Glutahione
Reductase, Complexed With Gopi
Length = 479
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 62/157 (39%), Gaps = 26/157 (16%)
Query: 227 VIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEE 286
VIVG G VE A L K +L+ D +L FD I+ E
Sbjct: 192 VIVGAGYIAVEMAGILSAL--------------GSKTSLMIRHDKVLRSFDSMISTNCTE 237
Query: 287 KFSRDGIDVKLGSMVVKV------TDKEIFTKVRGNGETSSM--PYGMVVWSTGIAPHAI 338
+ G++V S V +V + + T V G +M ++W+ G P+
Sbjct: 238 ELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNT- 296
Query: 339 IKDF-MKQVG-QTNRRALATDEWLRVEGSDSIYALGD 373
KD + ++G QT+ + + + IYA+GD
Sbjct: 297 -KDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGD 332
>pdb|3SG3|A Chain A, Crystal Structure Of Gcamp3-D380y
Length = 449
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 390 FSKADKDNSGTLTVKEFQEVIKDICERYPQVEL 422
FS DKD GT+T KE V++ + + + EL
Sbjct: 317 FSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL 349
>pdb|3EK8|A Chain A, Calcium-Saturated Gcamp2 T116vG87R MUTANT MONOMER
Length = 449
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 390 FSKADKDNSGTLTVKEFQEVIKDICERYPQVEL 422
FS DKD GT+T KE V++ + + + EL
Sbjct: 317 FSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL 349
>pdb|3SG7|A Chain A, Crystal Structure Of Gcamp3-Kf(Linker 1)
Length = 448
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 390 FSKADKDNSGTLTVKEFQEVIKDICERYPQVEL 422
FS DKD GT+T KE V++ + + + EL
Sbjct: 316 FSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL 348
>pdb|3DJG|X Chain X, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
Length = 477
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 62/157 (39%), Gaps = 26/157 (16%)
Query: 227 VIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEE 286
VIVG G VE A L K +L+ D +L FD I+ E
Sbjct: 190 VIVGAGYIAVEMAGILSAL--------------GSKTSLMIRHDKVLRSFDSMISTNCTE 235
Query: 287 KFSRDGIDVKLGSMVVKV------TDKEIFTKVRGNGETSSM--PYGMVVWSTGIAPHAI 338
+ G++V S V +V + + T V G +M ++W+ G P+
Sbjct: 236 ELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNT- 294
Query: 339 IKDF-MKQVG-QTNRRALATDEWLRVEGSDSIYALGD 373
KD + ++G QT+ + + + IYA+GD
Sbjct: 295 -KDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGD 330
>pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Ajoene Inhibitor And Subversive Substrate
pdb|2GH5|A Chain A, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|2GH5|B Chain B, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|1GRA|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRB|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRE|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRF|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|3GRS|A Chain A, Refined Structure Of Glutathione Reductase At 1.54
Angstroms Resolution
pdb|4GR1|A Chain A, The Binding Of The Retro-analogue Of Glutathione Disulfide
To Glutathione Reductase
pdb|3DJJ|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK4|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK8|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK9|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|1GRH|A Chain A, Inhibition Of Human Glutathione Reductase By The
Nitrosourea Drugs 1, 3-Bis(2-Chloroethyl)-1-Nitrosourea
And 1-(2-Chloroethyl)-3-(2- Hydroxyethyl)-1-Nitrosourea
pdb|3SQP|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
pdb|3SQP|B Chain B, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
Length = 478
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 62/157 (39%), Gaps = 26/157 (16%)
Query: 227 VIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEE 286
VIVG G VE A L K +L+ D +L FD I+ E
Sbjct: 191 VIVGAGYIAVEMAGILSAL--------------GSKTSLMIRHDKVLRSFDSMISTNCTE 236
Query: 287 KFSRDGIDVKLGSMVVKV------TDKEIFTKVRGNGETSSM--PYGMVVWSTGIAPHAI 338
+ G++V S V +V + + T V G +M ++W+ G P+
Sbjct: 237 ELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNT- 295
Query: 339 IKDF-MKQVG-QTNRRALATDEWLRVEGSDSIYALGD 373
KD + ++G QT+ + + + IYA+GD
Sbjct: 296 -KDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGD 331
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,071,033
Number of Sequences: 62578
Number of extensions: 629524
Number of successful extensions: 2646
Number of sequences better than 100.0: 165
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 2426
Number of HSP's gapped (non-prelim): 265
length of query: 515
length of database: 14,973,337
effective HSP length: 103
effective length of query: 412
effective length of database: 8,527,803
effective search space: 3513454836
effective search space used: 3513454836
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)