Query 010217
Match_columns 515
No_of_seqs 494 out of 3473
Neff 9.4
Searched_HMMs 46136
Date Thu Mar 28 22:25:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010217.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010217hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2495 NADH-dehydrogenase (ub 100.0 4.5E-68 9.8E-73 506.2 33.6 420 1-515 1-421 (491)
2 COG1252 Ndh NADH dehydrogenase 100.0 7.1E-55 1.5E-59 429.5 33.6 343 57-508 2-346 (405)
3 PTZ00318 NADH dehydrogenase-li 100.0 8.7E-47 1.9E-51 388.1 36.9 312 55-377 7-320 (424)
4 TIGR03169 Nterm_to_SelD pyridi 100.0 3E-38 6.4E-43 319.8 33.5 278 60-377 1-283 (364)
5 PRK09754 phenylpropionate diox 100.0 2.9E-38 6.2E-43 322.7 32.2 272 58-378 3-280 (396)
6 PRK13512 coenzyme A disulfide 100.0 1.8E-38 3.9E-43 327.8 30.4 274 58-377 1-281 (438)
7 PRK14989 nitrite reductase sub 100.0 4.7E-37 1E-41 335.5 31.5 273 58-379 3-287 (847)
8 PRK09564 coenzyme A disulfide 100.0 7.4E-37 1.6E-41 317.8 31.2 277 59-377 1-286 (444)
9 PRK04965 NADH:flavorubredoxin 100.0 1.4E-36 3.1E-41 308.5 31.4 271 58-379 2-279 (377)
10 COG1249 Lpd Pyruvate/2-oxoglut 100.0 4.6E-37 1E-41 311.2 24.7 271 57-379 3-316 (454)
11 TIGR02374 nitri_red_nirB nitri 100.0 2.1E-36 4.7E-41 331.0 30.6 271 61-379 1-278 (785)
12 TIGR01424 gluta_reduc_2 glutat 100.0 8E-35 1.7E-39 301.6 25.9 263 58-378 2-306 (446)
13 PRK06467 dihydrolipoamide dehy 100.0 1.5E-34 3.3E-39 300.8 27.0 283 57-391 3-329 (471)
14 PLN02507 glutathione reductase 100.0 3.4E-34 7.4E-39 299.3 29.6 270 56-379 23-344 (499)
15 PRK06416 dihydrolipoamide dehy 100.0 1.7E-34 3.6E-39 301.2 26.4 282 57-390 3-325 (462)
16 PRK07251 pyridine nucleotide-d 100.0 2.7E-34 5.9E-39 297.4 27.1 269 58-379 3-297 (438)
17 PRK05249 soluble pyridine nucl 100.0 4.4E-34 9.5E-39 298.2 27.9 280 57-390 4-326 (461)
18 TIGR03143 AhpF_homolog putativ 100.0 4.9E-35 1.1E-39 309.8 20.5 280 57-394 3-302 (555)
19 TIGR01421 gluta_reduc_1 glutat 100.0 4.1E-34 8.9E-39 296.0 26.2 263 58-379 2-309 (450)
20 PRK06116 glutathione reductase 100.0 4.1E-34 8.9E-39 297.2 25.7 272 58-390 4-319 (450)
21 PRK06370 mercuric reductase; V 100.0 7.5E-34 1.6E-38 296.1 27.4 267 58-379 5-315 (463)
22 PRK05976 dihydrolipoamide dehy 100.0 6.4E-34 1.4E-38 297.1 26.6 274 57-378 3-323 (472)
23 TIGR01423 trypano_reduc trypan 100.0 7.2E-34 1.6E-38 295.0 26.3 276 57-379 2-332 (486)
24 PRK14694 putative mercuric red 100.0 1.8E-33 3.8E-38 293.3 28.0 271 55-379 3-316 (468)
25 PRK08010 pyridine nucleotide-d 100.0 7.3E-34 1.6E-38 294.5 24.9 269 58-379 3-298 (441)
26 PTZ00058 glutathione reductase 100.0 1.7E-33 3.6E-38 295.1 27.6 271 56-377 46-377 (561)
27 PLN02546 glutathione reductase 100.0 1.4E-33 3E-38 295.9 26.5 263 58-379 79-394 (558)
28 KOG0405 Pyridine nucleotide-di 100.0 8.9E-34 1.9E-38 263.7 21.1 271 54-377 16-329 (478)
29 TIGR02053 MerA mercuric reduct 100.0 1.3E-33 2.8E-38 294.5 24.8 267 59-378 1-309 (463)
30 TIGR01292 TRX_reduct thioredox 100.0 6.9E-33 1.5E-37 273.2 27.9 277 59-393 1-293 (300)
31 PRK10262 thioredoxin reductase 100.0 3E-33 6.6E-38 278.1 25.2 286 56-393 4-307 (321)
32 PRK07845 flavoprotein disulfid 100.0 7.5E-33 1.6E-37 288.0 28.9 269 58-378 1-317 (466)
33 KOG1336 Monodehydroascorbate/f 100.0 2.4E-33 5.1E-38 274.0 23.4 275 56-380 72-355 (478)
34 TIGR01438 TGR thioredoxin and 100.0 3.4E-33 7.3E-38 290.7 25.4 268 58-377 2-322 (484)
35 PRK07818 dihydrolipoamide dehy 100.0 5E-33 1.1E-37 289.9 26.7 268 58-378 4-316 (466)
36 PRK06115 dihydrolipoamide dehy 100.0 5.7E-33 1.2E-37 288.9 26.9 271 58-379 3-319 (466)
37 PRK13748 putative mercuric red 100.0 8.2E-33 1.8E-37 295.5 27.2 268 57-379 97-409 (561)
38 PRK14727 putative mercuric red 100.0 2.1E-32 4.5E-37 285.7 28.3 271 55-379 13-327 (479)
39 COG0492 TrxB Thioredoxin reduc 100.0 1.6E-32 3.4E-37 265.5 25.2 277 57-394 2-294 (305)
40 TIGR03140 AhpF alkyl hydropero 100.0 8.3E-33 1.8E-37 290.8 25.1 280 56-393 210-505 (515)
41 PRK06912 acoL dihydrolipoamide 100.0 1.1E-32 2.3E-37 286.7 25.6 266 60-378 2-310 (458)
42 TIGR01350 lipoamide_DH dihydro 100.0 3.3E-32 7.2E-37 284.2 26.9 279 59-390 2-323 (461)
43 PRK07846 mycothione reductase; 100.0 8.8E-32 1.9E-36 278.4 29.1 261 59-379 2-306 (451)
44 COG1251 NirB NAD(P)H-nitrite r 100.0 9.4E-33 2E-37 281.4 21.0 378 58-490 3-430 (793)
45 PRK15317 alkyl hydroperoxide r 100.0 5.4E-32 1.2E-36 285.0 26.5 280 56-393 209-504 (517)
46 PRK06292 dihydrolipoamide dehy 100.0 6.5E-32 1.4E-36 281.8 25.3 265 58-379 3-312 (460)
47 PRK06327 dihydrolipoamide dehy 100.0 1.3E-31 2.7E-36 279.7 27.3 285 58-392 4-340 (475)
48 PTZ00052 thioredoxin reductase 100.0 1.6E-31 3.5E-36 279.5 27.5 264 58-377 5-319 (499)
49 PRK12831 putative oxidoreducta 100.0 6.4E-32 1.4E-36 279.7 24.0 290 55-394 137-454 (464)
50 TIGR01316 gltA glutamate synth 100.0 5.3E-32 1.1E-36 279.9 21.6 289 55-394 130-443 (449)
51 TIGR03385 CoA_CoA_reduc CoA-di 100.0 5.9E-31 1.3E-35 271.9 28.7 262 72-377 1-273 (427)
52 PRK09853 putative selenate red 100.0 1.1E-30 2.5E-35 283.2 26.7 280 56-395 537-836 (1019)
53 KOG1335 Dihydrolipoamide dehyd 100.0 4.3E-31 9.3E-36 248.9 19.1 273 57-380 38-359 (506)
54 PTZ00153 lipoamide dehydrogena 100.0 3.4E-30 7.4E-35 273.4 28.4 271 58-378 116-475 (659)
55 PRK12779 putative bifunctional 100.0 8.6E-31 1.9E-35 288.9 24.6 289 56-396 304-622 (944)
56 TIGR03452 mycothione_red mycot 100.0 6.3E-30 1.4E-34 264.9 28.7 261 58-378 2-308 (452)
57 TIGR03315 Se_ygfK putative sel 100.0 1.4E-29 3E-34 276.3 27.6 281 56-396 535-835 (1012)
58 PRK11749 dihydropyrimidine deh 100.0 4.5E-30 9.7E-35 266.9 22.5 283 55-394 137-445 (457)
59 PRK12778 putative bifunctional 100.0 5.3E-30 1.1E-34 281.0 21.7 287 56-394 429-743 (752)
60 PRK12814 putative NADPH-depend 100.0 5.9E-29 1.3E-33 267.5 23.7 279 56-394 191-494 (652)
61 PRK12770 putative glutamate sy 100.0 1E-28 2.2E-33 248.3 23.9 298 56-393 16-342 (352)
62 PRK12810 gltD glutamate syntha 100.0 1.4E-28 3E-33 256.2 23.6 291 56-393 141-457 (471)
63 KOG4716 Thioredoxin reductase 100.0 1.8E-29 3.8E-34 234.2 12.9 285 55-388 16-354 (503)
64 COG3634 AhpF Alkyl hydroperoxi 100.0 4.2E-29 9.1E-34 232.5 14.8 282 55-391 208-505 (520)
65 PRK12775 putative trifunctiona 100.0 1.5E-28 3.3E-33 273.5 21.6 290 56-394 428-748 (1006)
66 PLN02852 ferredoxin-NADP+ redu 100.0 3.1E-28 6.7E-33 249.7 21.6 310 55-394 23-415 (491)
67 TIGR01318 gltD_gamma_fam gluta 100.0 1.4E-27 3E-32 247.8 23.9 290 56-394 139-459 (467)
68 PRK12769 putative oxidoreducta 100.0 9.5E-28 2.1E-32 259.4 23.4 291 56-394 325-645 (654)
69 KOG0404 Thioredoxin reductase 100.0 1.1E-27 2.4E-32 210.2 18.1 286 58-393 8-311 (322)
70 PRK13984 putative oxidoreducta 100.0 9.2E-27 2E-31 250.3 24.0 290 55-394 280-595 (604)
71 TIGR01317 GOGAT_sm_gam glutama 99.9 1.1E-26 2.5E-31 241.9 22.5 294 56-393 141-471 (485)
72 PRK12809 putative oxidoreducta 99.9 1.2E-26 2.7E-31 249.6 23.1 290 56-394 308-628 (639)
73 TIGR01372 soxA sarcosine oxida 99.9 2.1E-25 4.6E-30 250.0 28.9 288 57-394 162-465 (985)
74 COG0446 HcaD Uncharacterized N 99.9 2.3E-24 5E-29 222.2 25.9 269 61-380 1-282 (415)
75 PRK12771 putative glutamate sy 99.9 6.9E-25 1.5E-29 233.5 21.7 279 55-394 134-437 (564)
76 PLN02172 flavin-containing mon 99.9 5.1E-23 1.1E-27 212.1 21.8 258 56-377 8-331 (461)
77 KOG3851 Sulfide:quinone oxidor 99.9 1.4E-22 3E-27 187.3 14.2 299 56-388 37-347 (446)
78 COG0493 GltD NADPH-dependent g 99.9 2.7E-22 5.9E-27 203.8 16.6 297 55-393 120-443 (457)
79 KOG1346 Programmed cell death 99.9 1.5E-21 3.4E-26 186.0 19.7 279 56-380 176-492 (659)
80 KOG2755 Oxidoreductase [Genera 99.9 5.4E-22 1.2E-26 178.6 8.5 266 60-377 1-322 (334)
81 KOG0399 Glutamate synthase [Am 99.8 2E-21 4.4E-26 203.1 10.0 302 46-392 1773-2111(2142)
82 PRK06567 putative bifunctional 99.8 6.9E-20 1.5E-24 196.9 20.9 252 54-339 379-730 (1028)
83 PF00743 FMO-like: Flavin-bind 99.8 1.4E-19 3E-24 189.1 18.0 160 58-245 1-205 (531)
84 PF07992 Pyr_redox_2: Pyridine 99.8 4.3E-21 9.2E-26 177.6 6.0 141 60-202 1-148 (201)
85 PF13738 Pyr_redox_3: Pyridine 99.7 8.4E-18 1.8E-22 155.8 9.0 165 62-271 1-201 (203)
86 PF13434 K_oxygenase: L-lysine 99.7 2.1E-16 4.7E-21 156.7 18.8 237 58-333 2-339 (341)
87 COG1148 HdrA Heterodisulfide r 99.7 2.1E-15 4.6E-20 147.4 23.8 318 55-389 121-533 (622)
88 PTZ00188 adrenodoxin reductase 99.7 1.2E-16 2.5E-21 161.7 15.5 291 56-385 37-424 (506)
89 KOG1399 Flavin-containing mono 99.7 2.8E-16 6.1E-21 159.2 14.7 221 56-334 4-268 (448)
90 KOG1800 Ferredoxin/adrenodoxin 99.7 4.8E-16 1E-20 147.7 14.0 303 57-395 19-401 (468)
91 COG2072 TrkA Predicted flavopr 99.7 9.5E-16 2.1E-20 157.7 16.2 178 55-272 5-210 (443)
92 COG3486 IucD Lysine/ornithine 99.7 2.1E-14 4.5E-19 138.8 22.5 282 56-376 3-387 (436)
93 PRK05329 anaerobic glycerol-3- 99.5 1.7E-13 3.7E-18 139.1 15.7 96 226-333 218-316 (422)
94 PF00070 Pyr_redox: Pyridine n 99.3 1.5E-11 3.3E-16 95.3 10.7 68 225-306 1-68 (80)
95 COG2081 Predicted flavoprotein 99.1 9.7E-10 2.1E-14 107.1 10.9 111 57-176 2-170 (408)
96 COG4529 Uncharacterized protei 99.0 3.9E-08 8.5E-13 98.4 19.4 175 58-270 1-231 (474)
97 PF03486 HI0933_like: HI0933-l 98.9 1.2E-08 2.6E-13 103.6 12.3 81 266-348 95-185 (409)
98 PF01266 DAO: FAD dependent ox 98.9 1.1E-07 2.4E-12 95.8 19.1 91 249-348 120-212 (358)
99 PRK09897 hypothetical protein; 98.9 2.2E-08 4.7E-13 104.9 13.7 158 58-245 1-213 (534)
100 PRK12842 putative succinate de 98.8 6.2E-09 1.3E-13 111.5 8.5 107 223-345 157-283 (574)
101 TIGR02032 GG-red-SF geranylger 98.8 2.7E-08 5.7E-13 97.5 9.6 109 59-175 1-148 (295)
102 PLN02463 lycopene beta cyclase 98.8 5.8E-08 1.3E-12 100.1 12.0 112 55-176 25-170 (447)
103 PRK07843 3-ketosteroid-delta-1 98.7 3.4E-08 7.3E-13 105.3 9.2 107 224-346 161-278 (557)
104 COG0579 Predicted dehydrogenas 98.7 7.8E-08 1.7E-12 96.9 10.8 97 245-348 122-220 (429)
105 PRK04176 ribulose-1,5-biphosph 98.7 5.7E-08 1.2E-12 92.8 9.4 117 57-175 24-173 (257)
106 COG0644 FixC Dehydrogenases (f 98.7 8.8E-08 1.9E-12 98.1 10.1 111 57-175 2-152 (396)
107 TIGR03378 glycerol3P_GlpB glyc 98.7 2E-06 4.4E-11 86.7 19.4 101 277-380 262-397 (419)
108 PRK06847 hypothetical protein; 98.6 2.1E-07 4.4E-12 94.8 10.9 112 57-177 3-165 (375)
109 PRK12409 D-amino acid dehydrog 98.6 3.7E-06 8.1E-11 86.7 19.5 35 59-93 2-36 (410)
110 COG0029 NadB Aspartate oxidase 98.6 6.8E-07 1.5E-11 89.5 13.2 32 60-92 9-40 (518)
111 PF00070 Pyr_redox: Pyridine n 98.6 1.5E-07 3.3E-12 72.8 6.9 76 60-147 1-78 (80)
112 TIGR00292 thiazole biosynthesi 98.6 2E-07 4.4E-12 88.8 9.1 116 57-174 20-169 (254)
113 PRK10157 putative oxidoreducta 98.6 2.7E-07 5.9E-12 95.4 10.4 38 57-94 4-41 (428)
114 PLN02697 lycopene epsilon cycl 98.6 3.1E-07 6.8E-12 96.3 10.5 108 56-175 106-248 (529)
115 TIGR01790 carotene-cycl lycope 98.6 2.8E-07 6.1E-12 94.3 10.0 106 60-175 1-141 (388)
116 PRK13977 myosin-cross-reactive 98.5 2.2E-06 4.8E-11 89.3 16.2 41 57-97 21-65 (576)
117 PF01134 GIDA: Glucose inhibit 98.5 1.4E-07 2.9E-12 94.0 7.0 105 60-173 1-150 (392)
118 PLN00093 geranylgeranyl diphos 98.5 3.6E-07 7.8E-12 94.7 10.3 39 53-91 34-72 (450)
119 PRK07364 2-octaprenyl-6-methox 98.5 3.8E-07 8.1E-12 94.2 10.5 37 57-93 17-53 (415)
120 PRK10015 oxidoreductase; Provi 98.5 3.9E-07 8.4E-12 94.1 10.4 38 57-94 4-41 (429)
121 PTZ00383 malate:quinone oxidor 98.5 6.8E-07 1.5E-11 93.2 12.0 64 278-348 211-282 (497)
122 PRK00711 D-amino acid dehydrog 98.5 4E-06 8.6E-11 86.6 17.0 52 279-333 202-255 (416)
123 PRK06912 acoL dihydrolipoamide 98.5 6.6E-07 1.4E-11 93.5 11.2 102 58-178 170-271 (458)
124 TIGR02023 BchP-ChlP geranylger 98.5 6.3E-07 1.4E-11 91.6 10.4 32 59-90 1-32 (388)
125 TIGR01377 soxA_mon sarcosine o 98.5 8.6E-06 1.9E-10 83.0 18.4 80 248-333 116-198 (380)
126 PRK08773 2-octaprenyl-3-methyl 98.5 8.4E-07 1.8E-11 90.9 10.9 37 56-92 4-40 (392)
127 PRK05192 tRNA uridine 5-carbox 98.5 6.4E-07 1.4E-11 94.2 10.0 39 57-95 3-42 (618)
128 PRK06416 dihydrolipoamide dehy 98.5 9.2E-07 2E-11 92.6 11.0 105 58-179 172-276 (462)
129 PRK07251 pyridine nucleotide-d 98.5 9.6E-07 2.1E-11 91.8 10.8 101 57-178 156-256 (438)
130 PRK05976 dihydrolipoamide dehy 98.4 1.1E-06 2.4E-11 92.3 11.2 104 58-179 180-285 (472)
131 PF05834 Lycopene_cycl: Lycope 98.4 8.7E-07 1.9E-11 90.0 10.1 105 60-176 1-143 (374)
132 PRK06134 putative FAD-binding 98.4 1E-06 2.2E-11 94.5 11.0 42 56-97 10-51 (581)
133 TIGR01350 lipoamide_DH dihydro 98.4 1.1E-06 2.3E-11 92.1 10.9 104 57-178 169-272 (461)
134 TIGR03364 HpnW_proposed FAD de 98.4 6.1E-06 1.3E-10 83.7 16.1 34 59-92 1-34 (365)
135 PF01494 FAD_binding_3: FAD bi 98.4 4.9E-07 1.1E-11 90.9 7.7 35 59-93 2-36 (356)
136 PRK06184 hypothetical protein; 98.4 1E-06 2.2E-11 93.2 10.5 35 58-92 3-37 (502)
137 TIGR03385 CoA_CoA_reduc CoA-di 98.4 1.1E-06 2.4E-11 91.0 10.5 100 58-178 137-236 (427)
138 COG1635 THI4 Ribulose 1,5-bisp 98.4 2.9E-07 6.3E-12 82.3 5.0 66 58-126 30-95 (262)
139 PRK07608 ubiquinone biosynthes 98.4 1.2E-06 2.6E-11 89.6 10.3 37 57-93 4-40 (388)
140 PRK08244 hypothetical protein; 98.4 7.6E-07 1.6E-11 94.1 9.0 35 58-92 2-36 (493)
141 COG3380 Predicted NAD/FAD-depe 98.4 6.1E-07 1.3E-11 82.8 7.0 37 59-95 2-38 (331)
142 PF13454 NAD_binding_9: FAD-NA 98.4 1.3E-06 2.8E-11 77.0 8.6 104 62-173 1-155 (156)
143 PRK05714 2-octaprenyl-3-methyl 98.4 1.3E-06 2.8E-11 89.9 9.9 34 58-91 2-35 (405)
144 PRK08163 salicylate hydroxylas 98.4 1.2E-06 2.5E-11 90.0 9.5 37 57-93 3-39 (396)
145 TIGR01320 mal_quin_oxido malat 98.4 1.9E-05 4.2E-10 82.6 18.5 68 278-349 178-250 (483)
146 TIGR03329 Phn_aa_oxid putative 98.4 6.7E-06 1.5E-10 86.0 15.1 53 278-333 183-235 (460)
147 COG1249 Lpd Pyruvate/2-oxoglut 98.4 2.2E-06 4.9E-11 87.9 10.8 104 56-179 171-276 (454)
148 PRK11101 glpA sn-glycerol-3-ph 98.4 6.4E-06 1.4E-10 87.8 14.6 94 247-347 121-219 (546)
149 PRK07333 2-octaprenyl-6-methox 98.4 1.4E-06 3.1E-11 89.5 9.4 35 58-92 1-37 (403)
150 TIGR02053 MerA mercuric reduct 98.4 2.1E-06 4.6E-11 89.9 10.6 105 58-179 166-270 (463)
151 PRK06834 hypothetical protein; 98.3 1.5E-06 3.2E-11 91.3 9.3 111 58-177 3-158 (488)
152 PRK06327 dihydrolipoamide dehy 98.3 2.6E-06 5.6E-11 89.4 11.2 105 57-179 182-288 (475)
153 PRK06370 mercuric reductase; V 98.3 2.1E-06 4.6E-11 89.9 10.5 103 57-178 170-274 (463)
154 TIGR01292 TRX_reduct thioredox 98.3 4.4E-06 9.6E-11 82.0 12.1 92 225-334 2-111 (300)
155 PF12831 FAD_oxidored: FAD dep 98.3 2.9E-07 6.2E-12 95.2 3.6 106 60-173 1-148 (428)
156 PRK04965 NADH:flavorubredoxin 98.3 2.9E-06 6.3E-11 86.4 10.9 102 57-177 140-241 (377)
157 PRK13800 putative oxidoreducta 98.3 1.2E-05 2.6E-10 90.7 16.6 36 57-92 12-47 (897)
158 PRK11445 putative oxidoreducta 98.3 3.4E-06 7.5E-11 84.9 11.0 34 58-92 1-34 (351)
159 PRK07236 hypothetical protein; 98.3 2.9E-06 6.4E-11 86.7 10.6 35 58-92 6-40 (386)
160 PRK09754 phenylpropionate diox 98.3 2.3E-06 4.9E-11 87.8 9.4 99 58-177 144-243 (396)
161 COG1232 HemY Protoporphyrinoge 98.3 4.9E-06 1.1E-10 84.7 11.4 38 59-96 1-40 (444)
162 PRK06126 hypothetical protein; 98.3 3.6E-06 7.8E-11 90.1 10.9 37 56-92 5-41 (545)
163 PLN02464 glycerol-3-phosphate 98.3 3.9E-05 8.4E-10 82.9 18.7 93 247-346 199-303 (627)
164 TIGR01988 Ubi-OHases Ubiquinon 98.3 3.7E-06 7.9E-11 85.8 10.4 33 60-92 1-33 (385)
165 PRK11728 hydroxyglutarate oxid 98.3 3.1E-06 6.8E-11 86.7 9.8 34 58-91 2-37 (393)
166 PRK08020 ubiF 2-octaprenyl-3-m 98.3 3.8E-06 8.3E-11 86.0 10.4 35 57-91 4-38 (391)
167 TIGR00275 flavoprotein, HI0933 98.3 2.5E-06 5.4E-11 87.4 9.0 33 62-94 1-33 (400)
168 TIGR01373 soxB sarcosine oxida 98.3 5.7E-05 1.2E-09 77.8 19.1 52 279-333 184-238 (407)
169 PRK08243 4-hydroxybenzoate 3-m 98.3 3.7E-06 8.1E-11 86.1 10.2 35 58-92 2-36 (392)
170 COG2081 Predicted flavoprotein 98.3 1.3E-05 2.9E-10 78.6 13.2 107 225-348 5-186 (408)
171 PRK08132 FAD-dependent oxidore 98.3 3.7E-06 7.9E-11 90.0 10.4 38 56-93 21-58 (547)
172 TIGR01789 lycopene_cycl lycope 98.3 4.5E-06 9.7E-11 84.5 10.4 35 60-94 1-37 (370)
173 PRK07190 hypothetical protein; 98.3 4.5E-06 9.7E-11 87.6 10.7 36 57-92 4-39 (487)
174 PRK05257 malate:quinone oxidor 98.3 7.6E-05 1.7E-09 78.3 19.8 67 278-348 183-255 (494)
175 PF13450 NAD_binding_8: NAD(P) 98.3 6.4E-07 1.4E-11 66.6 3.1 35 63-97 1-35 (68)
176 PRK06481 fumarate reductase fl 98.3 6.5E-06 1.4E-10 87.0 11.9 39 57-95 60-98 (506)
177 PF01946 Thi4: Thi4 family; PD 98.3 5.9E-07 1.3E-11 80.9 3.4 67 57-126 16-82 (230)
178 PRK07818 dihydrolipoamide dehy 98.3 5.1E-06 1.1E-10 87.0 10.9 106 57-178 171-276 (466)
179 PRK13512 coenzyme A disulfide 98.3 3.8E-06 8.3E-11 87.2 9.8 97 58-178 148-244 (438)
180 TIGR01984 UbiH 2-polyprenyl-6- 98.3 4.4E-06 9.6E-11 85.2 10.1 33 60-92 1-34 (382)
181 PRK06185 hypothetical protein; 98.2 4.4E-06 9.4E-11 86.1 9.9 37 56-92 4-40 (407)
182 TIGR02028 ChlP geranylgeranyl 98.2 5.4E-06 1.2E-10 84.9 10.1 34 59-92 1-34 (398)
183 PRK07045 putative monooxygenas 98.2 4.8E-06 1E-10 85.2 9.7 37 57-93 4-40 (388)
184 PRK14694 putative mercuric red 98.2 6.9E-06 1.5E-10 86.1 11.0 100 58-179 178-277 (468)
185 PRK04176 ribulose-1,5-biphosph 98.2 3.5E-05 7.6E-10 73.7 14.8 135 225-376 27-224 (257)
186 PRK09126 hypothetical protein; 98.2 7.8E-06 1.7E-10 83.7 11.1 35 58-92 3-37 (392)
187 PRK07494 2-octaprenyl-6-methox 98.2 4.6E-06 1E-10 85.3 9.3 36 57-92 6-41 (388)
188 PRK07588 hypothetical protein; 98.2 4.8E-06 1E-10 85.3 9.4 35 59-93 1-35 (391)
189 PRK09564 coenzyme A disulfide 98.2 7.8E-06 1.7E-10 85.2 11.2 97 225-333 2-113 (444)
190 PRK06116 glutathione reductase 98.2 5.7E-06 1.2E-10 86.3 10.0 103 57-179 166-269 (450)
191 PRK13339 malate:quinone oxidor 98.2 2.4E-05 5.1E-10 81.6 14.3 41 56-96 4-46 (497)
192 PRK05249 soluble pyridine nucl 98.2 7.3E-06 1.6E-10 85.8 10.7 102 57-178 174-275 (461)
193 TIGR01424 gluta_reduc_2 glutat 98.2 7.3E-06 1.6E-10 85.3 10.6 102 57-178 165-266 (446)
194 PRK06183 mhpA 3-(3-hydroxyphen 98.2 6.2E-06 1.3E-10 88.0 10.2 37 56-92 8-44 (538)
195 PRK11259 solA N-methyltryptoph 98.2 6.3E-06 1.4E-10 83.9 9.5 34 58-91 3-36 (376)
196 PRK07846 mycothione reductase; 98.2 8.2E-06 1.8E-10 84.9 10.5 101 58-179 166-266 (451)
197 COG0446 HcaD Uncharacterized N 98.2 4.8E-06 1E-10 85.7 8.7 98 58-176 136-238 (415)
198 PRK06115 dihydrolipoamide dehy 98.2 9.2E-06 2E-10 85.1 10.8 105 57-178 173-279 (466)
199 PRK06475 salicylate hydroxylas 98.2 5.6E-06 1.2E-10 85.0 9.0 35 58-92 2-36 (400)
200 PLN02661 Putative thiazole syn 98.2 1E-05 2.2E-10 79.6 10.2 39 57-95 91-130 (357)
201 PRK05732 2-octaprenyl-6-methox 98.2 9.6E-06 2.1E-10 83.1 10.6 33 58-90 3-38 (395)
202 COG0654 UbiH 2-polyprenyl-6-me 98.2 7.1E-06 1.5E-10 83.8 9.5 33 58-90 2-34 (387)
203 PRK08010 pyridine nucleotide-d 98.2 1E-05 2.2E-10 84.2 10.7 101 57-178 157-257 (441)
204 COG3075 GlpB Anaerobic glycero 98.2 3.8E-05 8.1E-10 73.0 13.1 54 279-332 259-314 (421)
205 PRK07121 hypothetical protein; 98.1 1.5E-05 3.3E-10 84.1 11.8 39 57-95 19-57 (492)
206 PRK06996 hypothetical protein; 98.1 9.8E-06 2.1E-10 83.2 10.0 38 54-91 7-48 (398)
207 PRK06753 hypothetical protein; 98.1 6.3E-06 1.4E-10 83.8 8.5 34 59-92 1-34 (373)
208 PRK08401 L-aspartate oxidase; 98.1 1.3E-05 2.8E-10 83.9 10.8 33 59-91 2-34 (466)
209 TIGR01421 gluta_reduc_1 glutat 98.1 9E-06 1.9E-10 84.7 9.4 102 58-178 166-268 (450)
210 TIGR00292 thiazole biosynthesi 98.1 8.2E-05 1.8E-09 70.9 15.2 135 225-376 23-223 (254)
211 PRK08849 2-octaprenyl-3-methyl 98.1 6.8E-06 1.5E-10 83.9 8.3 33 59-91 4-36 (384)
212 PRK07845 flavoprotein disulfid 98.1 1.5E-05 3.1E-10 83.6 10.9 102 58-179 177-278 (466)
213 PLN02507 glutathione reductase 98.1 1.6E-05 3.4E-10 83.9 10.9 102 58-179 203-304 (499)
214 PLN02985 squalene monooxygenas 98.1 2.3E-05 5E-10 82.7 12.0 37 55-91 40-76 (514)
215 PRK05868 hypothetical protein; 98.1 1.2E-05 2.6E-10 81.6 9.5 36 58-93 1-36 (372)
216 TIGR01813 flavo_cyto_c flavocy 98.1 1.5E-05 3.3E-10 82.9 10.4 36 60-95 1-37 (439)
217 PRK07538 hypothetical protein; 98.1 1.1E-05 2.5E-10 83.1 9.1 34 59-92 1-34 (413)
218 PRK13748 putative mercuric red 98.1 1.6E-05 3.5E-10 85.4 10.6 99 58-178 270-368 (561)
219 PRK14727 putative mercuric red 98.1 1.7E-05 3.8E-10 83.3 10.5 100 58-179 188-287 (479)
220 KOG2820 FAD-dependent oxidored 98.1 0.00017 3.7E-09 68.9 15.7 90 247-344 122-217 (399)
221 KOG0029 Amine oxidase [Seconda 98.1 3E-06 6.4E-11 88.2 4.4 43 54-96 11-53 (501)
222 COG2907 Predicted NAD/FAD-bind 98.1 8.4E-05 1.8E-09 71.2 13.6 40 57-97 7-46 (447)
223 TIGR01438 TGR thioredoxin and 98.1 1.7E-05 3.8E-10 83.2 10.1 101 58-178 180-282 (484)
224 COG2509 Uncharacterized FAD-de 98.1 0.00023 5E-09 71.0 17.1 78 269-348 164-243 (486)
225 PRK08274 tricarballylate dehyd 98.1 2.4E-05 5.2E-10 82.1 11.1 34 58-91 4-37 (466)
226 TIGR02360 pbenz_hydroxyl 4-hyd 98.1 1.8E-05 4E-10 80.9 10.0 35 58-92 2-36 (390)
227 PRK08013 oxidoreductase; Provi 98.1 1.7E-05 3.6E-10 81.5 9.6 35 58-92 3-37 (400)
228 COG1252 Ndh NADH dehydrogenase 98.1 7.4E-06 1.6E-10 82.2 6.6 97 58-177 155-264 (405)
229 TIGR02374 nitri_red_nirB nitri 98.0 1.7E-05 3.6E-10 88.1 10.0 100 58-178 140-241 (785)
230 PF00890 FAD_binding_2: FAD bi 98.0 1.7E-05 3.6E-10 82.1 9.4 36 60-95 1-36 (417)
231 TIGR03452 mycothione_red mycot 98.0 2.7E-05 5.8E-10 81.2 10.9 101 58-179 169-269 (452)
232 PRK06467 dihydrolipoamide dehy 98.0 2E-05 4.4E-10 82.6 10.1 102 58-178 174-277 (471)
233 PRK10262 thioredoxin reductase 98.0 2.5E-05 5.5E-10 77.6 10.3 104 57-178 145-251 (321)
234 PRK06617 2-octaprenyl-6-methox 98.0 1.4E-05 3E-10 81.3 8.6 32 59-90 2-33 (374)
235 PTZ00058 glutathione reductase 98.0 2.7E-05 5.9E-10 82.7 11.0 102 58-178 237-339 (561)
236 PRK06292 dihydrolipoamide dehy 98.0 2.2E-05 4.7E-10 82.2 10.2 104 57-179 168-272 (460)
237 COG0578 GlpA Glycerol-3-phosph 98.0 4.9E-05 1.1E-09 78.6 12.3 81 277-361 163-257 (532)
238 PRK14989 nitrite reductase sub 98.0 1.7E-05 3.7E-10 88.2 9.6 100 57-177 144-247 (847)
239 PRK12266 glpD glycerol-3-phosp 98.0 3.1E-05 6.8E-10 81.8 11.2 36 57-92 5-40 (508)
240 PRK07573 sdhA succinate dehydr 98.0 4.2E-05 9.1E-10 82.9 12.3 36 57-92 34-69 (640)
241 TIGR01423 trypano_reduc trypan 98.0 2.2E-05 4.8E-10 82.3 9.6 100 57-178 186-291 (486)
242 KOG1335 Dihydrolipoamide dehyd 98.0 1.8E-05 3.9E-10 76.6 8.0 106 56-178 209-317 (506)
243 COG3349 Uncharacterized conser 98.0 4.2E-06 9.1E-11 84.9 4.0 39 59-97 1-39 (485)
244 COG1148 HdrA Heterodisulfide r 98.0 0.0001 2.3E-09 73.6 13.3 71 222-306 123-206 (622)
245 PTZ00052 thioredoxin reductase 98.0 3.4E-05 7.5E-10 81.3 10.7 101 58-179 182-282 (499)
246 PRK08850 2-octaprenyl-6-methox 98.0 3E-05 6.5E-10 79.8 10.1 33 58-90 4-36 (405)
247 PLN02172 flavin-containing mon 98.0 7.2E-05 1.6E-09 77.8 12.9 104 222-339 9-177 (461)
248 PRK01747 mnmC bifunctional tRN 98.0 2.6E-05 5.6E-10 85.4 10.1 34 58-91 260-293 (662)
249 TIGR03219 salicylate_mono sali 98.0 1.8E-05 3.9E-10 81.7 8.2 35 59-93 1-36 (414)
250 COG0665 DadA Glycine/D-amino a 98.0 0.00011 2.4E-09 75.0 13.9 39 56-94 2-40 (387)
251 PRK06452 sdhA succinate dehydr 98.0 4E-05 8.6E-10 82.1 11.0 36 57-92 4-39 (566)
252 PTZ00318 NADH dehydrogenase-li 98.0 3.3E-05 7.2E-10 79.9 10.0 94 59-176 174-281 (424)
253 PLN00128 Succinate dehydrogena 98.0 6.1E-05 1.3E-09 81.4 12.2 36 57-92 49-84 (635)
254 TIGR00136 gidA glucose-inhibit 98.0 3.4E-05 7.3E-10 81.3 9.6 33 59-91 1-33 (617)
255 PRK15317 alkyl hydroperoxide r 97.9 8E-05 1.7E-09 79.1 12.2 94 223-333 211-320 (517)
256 PF13738 Pyr_redox_3: Pyridine 97.9 5.3E-05 1.2E-09 69.8 9.3 96 227-339 1-142 (203)
257 PRK06175 L-aspartate oxidase; 97.9 5.9E-05 1.3E-09 78.1 10.5 36 58-94 4-39 (433)
258 TIGR01812 sdhA_frdA_Gneg succi 97.9 5.4E-05 1.2E-09 81.4 10.6 33 60-92 1-33 (566)
259 KOG1336 Monodehydroascorbate/f 97.9 5.3E-05 1.1E-09 75.9 9.4 103 58-181 213-319 (478)
260 TIGR00551 nadB L-aspartate oxi 97.9 5.4E-05 1.2E-09 79.7 10.2 35 58-93 2-36 (488)
261 TIGR01989 COQ6 Ubiquinone bios 97.9 3.7E-05 8E-10 79.9 8.8 32 59-90 1-36 (437)
262 PRK07803 sdhA succinate dehydr 97.9 4.5E-05 9.8E-10 82.5 9.7 37 57-93 7-43 (626)
263 PF00743 FMO-like: Flavin-bind 97.9 0.00012 2.6E-09 77.3 12.6 138 224-376 2-194 (531)
264 PRK08626 fumarate reductase fl 97.9 7.2E-05 1.6E-09 81.3 11.1 36 57-92 4-39 (657)
265 PTZ00139 Succinate dehydrogena 97.9 0.00036 7.8E-09 75.4 16.4 55 278-332 166-226 (617)
266 PRK07804 L-aspartate oxidase; 97.9 9.4E-05 2E-09 78.8 11.5 38 56-93 14-51 (541)
267 PRK05945 sdhA succinate dehydr 97.9 6.8E-05 1.5E-09 80.6 10.4 36 58-93 3-40 (575)
268 PRK12779 putative bifunctional 97.9 3.1E-05 6.8E-10 87.0 8.0 89 222-333 305-402 (944)
269 TIGR03140 AhpF alkyl hydropero 97.9 0.00012 2.7E-09 77.6 12.0 95 222-333 211-321 (515)
270 PRK06263 sdhA succinate dehydr 97.9 7.3E-05 1.6E-09 79.8 10.3 35 57-92 6-40 (543)
271 PRK11883 protoporphyrinogen ox 97.8 1.2E-05 2.6E-10 84.0 4.1 39 59-97 1-41 (451)
272 PRK08958 sdhA succinate dehydr 97.8 0.00047 1E-08 74.1 16.0 38 58-95 7-44 (588)
273 PRK12770 putative glutamate sy 97.8 5E-05 1.1E-09 76.6 7.9 98 222-333 17-128 (352)
274 TIGR02462 pyranose_ox pyranose 97.8 0.0003 6.5E-09 74.0 13.8 37 59-95 1-37 (544)
275 COG0493 GltD NADPH-dependent g 97.8 5.4E-05 1.2E-09 77.9 8.1 88 222-333 122-218 (457)
276 PTZ00153 lipoamide dehydrogena 97.8 8.8E-05 1.9E-09 80.0 10.0 110 58-179 312-431 (659)
277 PF07992 Pyr_redox_2: Pyridine 97.8 4.6E-05 1E-09 70.0 6.9 139 225-378 1-200 (201)
278 COG1233 Phytoene dehydrogenase 97.8 1.7E-05 3.6E-10 83.4 4.4 41 57-97 2-42 (487)
279 PRK08275 putative oxidoreducta 97.8 0.0001 2.3E-09 78.8 10.5 36 57-92 8-45 (554)
280 PRK06847 hypothetical protein; 97.8 0.00024 5.3E-09 72.2 12.8 57 279-340 108-166 (375)
281 PRK11749 dihydropyrimidine deh 97.8 3.9E-05 8.5E-10 80.2 7.1 89 221-333 138-235 (457)
282 PRK06854 adenylylsulfate reduc 97.8 0.00013 2.8E-09 78.7 11.1 35 58-92 11-47 (608)
283 PLN02268 probable polyamine ox 97.8 1.8E-05 3.8E-10 82.3 4.3 39 59-97 1-39 (435)
284 PRK06069 sdhA succinate dehydr 97.8 9.6E-05 2.1E-09 79.5 10.1 37 57-93 4-43 (577)
285 PRK09853 putative selenate red 97.8 7.8E-05 1.7E-09 83.0 9.4 88 221-333 537-633 (1019)
286 PRK09078 sdhA succinate dehydr 97.8 0.00016 3.5E-09 77.9 11.7 35 57-91 11-45 (598)
287 PRK07208 hypothetical protein; 97.8 1.9E-05 4.2E-10 83.1 4.5 41 57-97 3-43 (479)
288 TIGR01316 gltA glutamate synth 97.8 6.1E-05 1.3E-09 78.4 8.1 88 222-333 132-228 (449)
289 PLN02546 glutathione reductase 97.8 0.00014 2.9E-09 77.4 10.8 102 57-178 251-353 (558)
290 TIGR03169 Nterm_to_SelD pyridi 97.8 0.00011 2.5E-09 74.3 9.7 95 58-177 145-245 (364)
291 TIGR02032 GG-red-SF geranylger 97.8 0.00028 6E-09 68.9 12.0 93 225-333 2-146 (295)
292 PLN02815 L-aspartate oxidase 97.8 0.00016 3.6E-09 77.4 11.0 39 56-95 27-65 (594)
293 PRK08255 salicylyl-CoA 5-hydro 97.7 2.3E-05 5.1E-10 86.8 4.5 34 59-92 1-36 (765)
294 PRK07057 sdhA succinate dehydr 97.7 0.00018 4E-09 77.3 11.2 35 57-91 11-45 (591)
295 PRK07233 hypothetical protein; 97.7 2.4E-05 5.2E-10 81.2 4.0 38 60-97 1-38 (434)
296 COG0445 GidA Flavin-dependent 97.7 2.6E-05 5.6E-10 79.2 3.9 33 58-90 4-36 (621)
297 PLN02576 protoporphyrinogen ox 97.7 3.6E-05 7.7E-10 81.5 5.1 42 56-97 10-52 (496)
298 TIGR00562 proto_IX_ox protopor 97.7 2.9E-05 6.4E-10 81.3 4.2 40 58-97 2-45 (462)
299 PRK08294 phenol 2-monooxygenas 97.7 0.00028 6.1E-09 76.5 11.8 36 57-92 31-67 (634)
300 TIGR01318 gltD_gamma_fam gluta 97.7 0.00016 3.4E-09 75.7 9.4 89 222-334 140-237 (467)
301 PF06039 Mqo: Malate:quinone o 97.7 5.1E-05 1.1E-09 76.1 5.4 92 279-374 182-290 (488)
302 PRK08205 sdhA succinate dehydr 97.7 0.00026 5.6E-09 76.2 10.8 35 57-92 4-38 (583)
303 TIGR01176 fum_red_Fp fumarate 97.7 0.00027 5.8E-09 75.9 10.7 36 58-93 3-40 (580)
304 TIGR01811 sdhA_Bsu succinate d 97.7 0.00022 4.7E-09 76.9 10.1 31 61-91 1-31 (603)
305 PTZ00188 adrenodoxin reductase 97.6 0.00016 3.6E-09 74.2 8.4 89 222-333 38-136 (506)
306 PLN02852 ferredoxin-NADP+ redu 97.6 0.00011 2.3E-09 76.5 7.2 90 222-333 25-124 (491)
307 PRK12778 putative bifunctional 97.6 0.00016 3.4E-09 80.4 8.9 90 221-333 429-527 (752)
308 TIGR01317 GOGAT_sm_gam glutama 97.6 0.00022 4.9E-09 74.9 9.6 88 222-333 142-238 (485)
309 PRK07236 hypothetical protein; 97.6 0.00038 8.1E-09 71.2 11.0 99 224-341 7-158 (386)
310 PRK09231 fumarate reductase fl 97.6 0.00027 5.8E-09 76.0 10.2 36 58-93 4-41 (582)
311 PRK12416 protoporphyrinogen ox 97.6 4.6E-05 1E-09 79.9 4.1 39 59-97 2-46 (463)
312 PRK12775 putative trifunctiona 97.6 9.8E-05 2.1E-09 83.8 6.9 90 222-333 429-527 (1006)
313 TIGR02733 desat_CrtD C-3',4' d 97.6 5.1E-05 1.1E-09 80.2 4.4 39 59-97 2-40 (492)
314 KOG2495 NADH-dehydrogenase (ub 97.6 6.2E-05 1.4E-09 74.1 4.3 100 58-177 218-331 (491)
315 PRK12831 putative oxidoreducta 97.6 0.00014 2.9E-09 76.1 7.0 91 221-333 138-238 (464)
316 PLN02529 lysine-specific histo 97.6 8E-05 1.7E-09 80.9 5.4 44 54-97 156-199 (738)
317 TIGR00031 UDP-GALP_mutase UDP- 97.6 6.7E-05 1.5E-09 75.5 4.4 38 59-96 2-39 (377)
318 TIGR02734 crtI_fam phytoene de 97.6 5.3E-05 1.1E-09 80.3 3.7 53 278-332 219-273 (502)
319 KOG0399 Glutamate synthase [Am 97.5 0.00032 6.8E-09 76.4 9.0 117 187-333 1755-1880(2142)
320 PF04820 Trp_halogenase: Trypt 97.5 0.00015 3.3E-09 75.4 6.6 31 60-90 1-34 (454)
321 COG1231 Monoamine oxidase [Ami 97.5 0.00014 3.1E-09 72.7 6.0 44 56-99 5-48 (450)
322 TIGR02731 phytoene_desat phyto 97.5 6.6E-05 1.4E-09 78.5 3.9 38 60-97 1-38 (453)
323 PRK01438 murD UDP-N-acetylmura 97.5 0.00041 8.9E-09 73.1 9.9 83 58-183 16-98 (480)
324 PRK12809 putative oxidoreducta 97.5 0.00029 6.3E-09 76.7 9.0 88 222-333 309-405 (639)
325 PLN02568 polyamine oxidase 97.5 8.9E-05 1.9E-09 78.6 4.8 41 57-97 4-49 (539)
326 PF01494 FAD_binding_3: FAD bi 97.5 0.00061 1.3E-08 68.3 10.4 59 279-339 112-174 (356)
327 PRK12769 putative oxidoreducta 97.5 0.00038 8.3E-09 76.0 9.3 89 221-333 325-422 (654)
328 KOG2665 Predicted FAD-dependen 97.5 0.00094 2E-08 63.3 10.4 41 55-95 45-87 (453)
329 PRK05335 tRNA (uracil-5-)-meth 97.5 8.9E-05 1.9E-09 74.9 3.9 36 58-93 2-37 (436)
330 TIGR03143 AhpF_homolog putativ 97.5 0.00087 1.9E-08 71.8 11.5 100 57-178 142-249 (555)
331 PRK12810 gltD glutamate syntha 97.5 0.00026 5.6E-09 74.2 7.2 88 222-333 142-238 (471)
332 TIGR03315 Se_ygfK putative sel 97.4 0.00034 7.5E-09 78.3 8.3 87 222-333 536-631 (1012)
333 PLN02487 zeta-carotene desatur 97.4 0.00017 3.7E-09 76.6 5.3 40 57-96 74-113 (569)
334 TIGR00137 gid_trmFO tRNA:m(5)U 97.4 0.00048 1E-08 70.1 8.2 35 225-273 2-36 (433)
335 PRK07512 L-aspartate oxidase; 97.4 0.00069 1.5E-08 71.7 9.7 35 56-92 7-41 (513)
336 TIGR02730 carot_isom carotene 97.4 0.00013 2.9E-09 77.0 4.2 53 278-332 229-283 (493)
337 PLN02328 lysine-specific histo 97.4 0.00016 3.6E-09 79.0 4.9 44 54-97 234-277 (808)
338 PF01134 GIDA: Glucose inhibit 97.4 0.0015 3.2E-08 65.5 11.0 92 225-333 1-150 (392)
339 PRK01438 murD UDP-N-acetylmura 97.4 0.00082 1.8E-08 70.8 9.7 78 222-339 15-92 (480)
340 PLN02612 phytoene desaturase 97.4 0.00021 4.6E-09 76.5 5.3 43 55-97 90-132 (567)
341 PLN02661 Putative thiazole syn 97.4 0.0069 1.5E-07 59.9 15.3 96 225-333 94-242 (357)
342 PLN02927 antheraxanthin epoxid 97.3 0.00019 4.2E-09 77.0 4.6 36 56-91 79-114 (668)
343 TIGR02732 zeta_caro_desat caro 97.3 0.00015 3.3E-09 75.9 3.8 37 60-96 1-37 (474)
344 KOG2415 Electron transfer flav 97.3 0.00017 3.6E-09 70.7 3.6 45 54-98 72-122 (621)
345 PRK12814 putative NADPH-depend 97.3 0.00056 1.2E-08 74.5 8.2 89 221-333 191-288 (652)
346 PLN02676 polyamine oxidase 97.3 0.0002 4.4E-09 75.2 4.5 41 57-97 25-66 (487)
347 PRK08244 hypothetical protein; 97.3 0.0025 5.4E-08 67.4 12.7 99 225-340 4-162 (493)
348 PLN02463 lycopene beta cyclase 97.3 0.0023 5.1E-08 66.2 12.0 92 225-334 30-168 (447)
349 COG0492 TrxB Thioredoxin reduc 97.3 0.0024 5.3E-08 62.4 11.4 94 225-336 5-116 (305)
350 PTZ00367 squalene epoxidase; P 97.3 0.00024 5.3E-09 75.5 4.7 35 57-91 32-66 (567)
351 PRK06834 hypothetical protein; 97.3 0.0024 5.1E-08 67.3 12.0 97 225-340 5-159 (488)
352 COG1635 THI4 Ribulose 1,5-bisp 97.3 0.0086 1.9E-07 54.2 13.5 134 225-376 32-229 (262)
353 PRK13369 glycerol-3-phosphate 97.3 0.00027 5.8E-09 74.8 4.8 41 56-96 4-44 (502)
354 KOG2614 Kynurenine 3-monooxyge 97.3 0.00044 9.6E-09 68.3 5.7 39 58-96 2-40 (420)
355 PRK10157 putative oxidoreducta 97.2 0.0045 9.8E-08 64.1 13.3 50 281-333 111-162 (428)
356 PRK07364 2-octaprenyl-6-methox 97.2 0.0032 7E-08 64.9 12.1 55 283-339 126-183 (415)
357 TIGR01789 lycopene_cycl lycope 97.2 0.0018 3.9E-08 65.6 9.8 93 226-335 2-138 (370)
358 PRK06184 hypothetical protein; 97.2 0.0038 8.2E-08 66.2 12.6 51 281-333 112-166 (502)
359 PRK07333 2-octaprenyl-6-methox 97.2 0.0033 7.2E-08 64.5 11.7 52 279-333 112-165 (403)
360 KOG1298 Squalene monooxygenase 97.2 0.0016 3.5E-08 63.5 8.3 37 54-90 41-77 (509)
361 PF01946 Thi4: Thi4 family; PD 97.2 0.015 3.3E-07 52.9 14.0 96 224-333 18-163 (230)
362 PRK08163 salicylate hydroxylas 97.1 0.0042 9.1E-08 63.6 12.0 47 284-333 115-164 (396)
363 TIGR01372 soxA sarcosine oxida 97.1 0.0036 7.8E-08 71.6 12.5 98 223-334 163-285 (985)
364 KOG0685 Flavin-containing amin 97.1 0.00045 9.7E-09 69.3 4.5 40 57-96 20-60 (498)
365 PRK08243 4-hydroxybenzoate 3-m 97.1 0.0052 1.1E-07 62.9 12.3 57 283-341 108-167 (392)
366 PRK06183 mhpA 3-(3-hydroxyphen 97.1 0.0052 1.1E-07 65.7 12.8 59 281-341 116-178 (538)
367 PRK08773 2-octaprenyl-3-methyl 97.1 0.0057 1.2E-07 62.6 12.5 55 280-339 115-171 (392)
368 PRK08641 sdhA succinate dehydr 97.1 0.00044 9.5E-09 74.4 4.4 37 58-94 3-39 (589)
369 KOG2853 Possible oxidoreductas 97.1 0.03 6.5E-07 54.0 15.9 39 57-95 85-127 (509)
370 PRK05714 2-octaprenyl-3-methyl 97.1 0.0043 9.3E-08 63.8 11.5 54 283-341 117-172 (405)
371 COG0562 Glf UDP-galactopyranos 97.1 0.00054 1.2E-08 65.3 4.2 40 58-97 1-40 (374)
372 PLN02697 lycopene epsilon cycl 97.1 0.0053 1.2E-07 64.8 12.0 94 224-334 109-247 (529)
373 PRK07608 ubiquinone biosynthes 97.1 0.0055 1.2E-07 62.5 11.9 49 281-333 114-165 (388)
374 KOG2404 Fumarate reductase, fl 97.1 0.0018 3.8E-08 61.7 7.3 36 60-95 11-46 (477)
375 PRK12837 3-ketosteroid-delta-1 97.0 0.00059 1.3E-08 72.3 4.6 39 58-97 7-45 (513)
376 TIGR00137 gid_trmFO tRNA:m(5)U 97.0 0.0005 1.1E-08 70.0 3.8 35 59-93 1-35 (433)
377 PRK12834 putative FAD-binding 97.0 0.00064 1.4E-08 72.7 4.5 40 57-96 3-44 (549)
378 PRK12771 putative glutamate sy 97.0 0.0013 2.9E-08 70.6 6.9 88 221-333 135-232 (564)
379 PTZ00363 rab-GDP dissociation 97.0 0.00083 1.8E-08 69.3 5.1 40 58-97 4-43 (443)
380 PRK09897 hypothetical protein; 97.0 0.0067 1.5E-07 64.0 12.0 43 289-333 118-164 (534)
381 PRK07190 hypothetical protein; 97.0 0.0086 1.9E-07 63.0 12.7 50 281-333 112-163 (487)
382 TIGR02485 CobZ_N-term precorri 97.0 0.0026 5.7E-08 66.0 8.8 30 63-92 1-30 (432)
383 PRK12845 3-ketosteroid-delta-1 97.0 0.00083 1.8E-08 71.8 5.1 44 56-100 14-57 (564)
384 KOG2311 NAD/FAD-utilizing prot 97.0 0.00082 1.8E-08 67.1 4.6 35 56-90 26-60 (679)
385 COG0654 UbiH 2-polyprenyl-6-me 97.0 0.008 1.7E-07 61.4 12.0 98 225-341 4-166 (387)
386 PRK13984 putative oxidoreducta 97.0 0.0017 3.8E-08 70.3 7.5 89 221-333 281-378 (604)
387 PRK12835 3-ketosteroid-delta-1 97.0 0.00083 1.8E-08 72.2 4.9 40 57-96 10-49 (584)
388 PRK08132 FAD-dependent oxidore 97.0 0.0093 2E-07 64.0 12.8 56 282-340 129-188 (547)
389 PRK06126 hypothetical protein; 96.9 0.0083 1.8E-07 64.3 12.3 51 283-333 131-186 (545)
390 PRK11445 putative oxidoreducta 96.9 0.014 3.1E-07 58.7 13.2 44 290-333 110-155 (351)
391 PRK06567 putative bifunctional 96.9 0.0019 4.1E-08 71.5 7.0 35 221-269 381-415 (1028)
392 PRK05868 hypothetical protein; 96.9 0.011 2.4E-07 60.0 12.3 48 290-342 116-165 (372)
393 PRK12844 3-ketosteroid-delta-1 96.9 0.00086 1.9E-08 71.7 4.3 40 58-97 6-45 (557)
394 PLN03000 amine oxidase 96.9 0.00095 2.1E-08 73.3 4.6 41 57-97 183-223 (881)
395 PRK05192 tRNA uridine 5-carbox 96.9 0.0075 1.6E-07 64.0 11.1 91 225-332 6-154 (618)
396 PRK09126 hypothetical protein; 96.9 0.0098 2.1E-07 60.8 11.9 47 289-340 122-170 (392)
397 PRK07588 hypothetical protein; 96.9 0.013 2.8E-07 59.9 12.7 46 291-341 115-162 (391)
398 COG2072 TrkA Predicted flavopr 96.9 0.0054 1.2E-07 63.6 9.8 136 224-376 9-186 (443)
399 PRK07395 L-aspartate oxidase; 96.8 0.0013 2.8E-08 70.2 5.2 39 56-95 7-45 (553)
400 PRK12839 hypothetical protein; 96.8 0.0011 2.5E-08 70.9 4.8 42 56-97 6-47 (572)
401 KOG2844 Dimethylglycine dehydr 96.8 0.016 3.6E-07 60.5 12.7 82 249-335 159-243 (856)
402 TIGR01984 UbiH 2-polyprenyl-6- 96.8 0.011 2.3E-07 60.3 11.7 50 281-333 108-160 (382)
403 KOG1276 Protoporphyrinogen oxi 96.8 0.0011 2.3E-08 65.6 4.0 42 55-96 8-51 (491)
404 TIGR00275 flavoprotein, HI0933 96.8 0.0071 1.5E-07 62.0 10.2 66 279-348 106-179 (400)
405 PRK07045 putative monooxygenas 96.8 0.017 3.7E-07 59.0 13.0 58 280-341 108-169 (388)
406 PF00732 GMC_oxred_N: GMC oxid 96.8 0.001 2.3E-08 65.2 3.9 67 279-348 194-268 (296)
407 PRK06753 hypothetical protein; 96.8 0.01 2.2E-07 60.3 10.9 96 225-341 2-156 (373)
408 PLN02976 amine oxidase 96.8 0.0016 3.5E-08 74.2 5.1 42 55-96 690-731 (1713)
409 PRK06475 salicylate hydroxylas 96.7 0.015 3.3E-07 59.6 11.9 57 282-342 111-172 (400)
410 PTZ00306 NADH-dependent fumara 96.7 0.0019 4E-08 75.0 5.4 41 56-96 407-447 (1167)
411 PRK08071 L-aspartate oxidase; 96.7 0.0018 3.8E-08 68.6 4.6 37 58-95 3-39 (510)
412 TIGR01790 carotene-cycl lycope 96.7 0.015 3.3E-07 59.4 11.4 92 225-333 1-139 (388)
413 COG0644 FixC Dehydrogenases (f 96.7 0.026 5.6E-07 57.9 13.0 93 225-333 5-150 (396)
414 PRK08013 oxidoreductase; Provi 96.7 0.02 4.4E-07 58.8 12.3 54 282-340 115-171 (400)
415 TIGR01988 Ubi-OHases Ubiquinon 96.7 0.022 4.7E-07 58.0 12.4 49 282-333 110-161 (385)
416 PRK10015 oxidoreductase; Provi 96.6 0.02 4.3E-07 59.3 12.1 51 280-333 110-162 (429)
417 PRK12843 putative FAD-binding 96.6 0.0027 5.9E-08 68.3 5.8 42 57-98 15-56 (578)
418 PRK08849 2-octaprenyl-3-methyl 96.6 0.019 4.1E-07 58.6 11.6 45 291-340 124-170 (384)
419 TIGR02061 aprA adenosine phosp 96.6 0.0016 3.5E-08 70.0 3.9 33 60-92 1-37 (614)
420 PRK08020 ubiF 2-octaprenyl-3-m 96.6 0.021 4.5E-07 58.4 11.8 49 282-333 116-167 (391)
421 PF13434 K_oxygenase: L-lysine 96.6 0.0039 8.4E-08 62.3 6.0 38 55-92 187-226 (341)
422 KOG1399 Flavin-containing mono 96.6 0.02 4.3E-07 58.9 11.1 102 223-339 6-157 (448)
423 PRK08850 2-octaprenyl-6-methox 96.5 0.028 6.1E-07 57.8 12.4 44 291-339 125-170 (405)
424 TIGR02360 pbenz_hydroxyl 4-hyd 96.5 0.02 4.3E-07 58.5 11.0 56 284-341 109-167 (390)
425 TIGR01989 COQ6 Ubiquinone bios 96.5 0.023 5E-07 59.1 11.4 54 282-340 121-186 (437)
426 PF06100 Strep_67kDa_ant: Stre 96.5 0.022 4.8E-07 58.2 10.6 39 58-96 2-44 (500)
427 PRK11728 hydroxyglutarate oxid 96.4 0.047 1E-06 55.9 13.2 45 285-333 156-202 (393)
428 PRK09077 L-aspartate oxidase; 96.4 0.0027 5.9E-08 67.7 4.1 38 57-95 7-44 (536)
429 PRK06617 2-octaprenyl-6-methox 96.4 0.023 5.1E-07 57.7 10.7 54 281-340 107-163 (374)
430 PRK07538 hypothetical protein; 96.4 0.029 6.3E-07 57.8 11.4 42 292-333 117-163 (413)
431 PRK02106 choline dehydrogenase 96.4 0.0034 7.4E-08 67.4 4.7 36 57-92 4-40 (560)
432 PF12831 FAD_oxidored: FAD dep 96.4 0.0032 7E-08 65.1 4.3 93 225-332 1-147 (428)
433 PRK06996 hypothetical protein; 96.4 0.028 6.1E-07 57.6 11.0 53 279-332 116-171 (398)
434 PRK06481 fumarate reductase fl 96.4 0.041 8.8E-07 58.3 12.4 53 280-332 192-248 (506)
435 PRK12266 glpD glycerol-3-phosp 96.3 0.054 1.2E-06 57.4 13.0 48 286-333 163-214 (508)
436 TIGR02023 BchP-ChlP geranylger 96.3 0.039 8.3E-07 56.4 11.6 94 225-333 2-153 (388)
437 PRK06185 hypothetical protein; 96.3 0.051 1.1E-06 55.9 12.4 52 281-333 111-167 (407)
438 TIGR02028 ChlP geranylgeranyl 96.3 0.027 5.9E-07 57.7 10.2 22 225-246 2-23 (398)
439 TIGR00136 gidA glucose-inhibit 96.3 0.038 8.3E-07 58.7 11.3 49 283-334 101-153 (617)
440 PRK07494 2-octaprenyl-6-methox 96.2 0.044 9.6E-07 55.9 11.6 48 282-333 115-165 (388)
441 COG1053 SdhA Succinate dehydro 96.2 0.0045 9.8E-08 65.7 4.3 39 56-94 4-42 (562)
442 PF05834 Lycopene_cycl: Lycope 96.2 0.03 6.5E-07 56.9 10.1 93 226-333 2-140 (374)
443 KOG1346 Programmed cell death 96.2 0.0073 1.6E-07 59.5 5.3 101 57-178 346-452 (659)
444 TIGR03219 salicylate_mono sali 96.1 0.051 1.1E-06 56.0 11.7 39 292-333 117-157 (414)
445 TIGR01813 flavo_cyto_c flavocy 96.1 0.083 1.8E-06 55.0 13.3 53 280-333 132-190 (439)
446 PRK08274 tricarballylate dehyd 96.1 0.082 1.8E-06 55.5 13.3 51 282-332 135-189 (466)
447 PRK05732 2-octaprenyl-6-methox 96.1 0.08 1.7E-06 54.1 12.8 48 283-333 117-167 (395)
448 PLN02985 squalene monooxygenas 96.1 0.078 1.7E-06 56.2 12.9 24 223-246 43-66 (514)
449 KOG2960 Protein involved in th 96.1 0.0025 5.4E-08 57.0 1.3 40 58-97 76-117 (328)
450 COG1251 NirB NAD(P)H-nitrite r 96.0 0.029 6.2E-07 59.7 8.8 129 224-377 4-144 (793)
451 PLN00093 geranylgeranyl diphos 96.0 0.055 1.2E-06 56.3 10.8 21 225-245 41-61 (450)
452 PF13241 NAD_binding_7: Putati 96.0 0.0086 1.9E-07 48.5 3.9 34 57-90 6-39 (103)
453 KOG2852 Possible oxidoreductas 95.9 0.0054 1.2E-07 57.6 2.7 41 56-96 8-54 (380)
454 PRK14106 murD UDP-N-acetylmura 95.8 0.013 2.8E-07 61.2 5.7 35 57-91 4-38 (450)
455 PRK08294 phenol 2-monooxygenas 95.8 0.092 2E-06 57.2 12.1 60 280-341 143-214 (634)
456 PRK08275 putative oxidoreducta 95.7 0.13 2.8E-06 55.2 12.9 53 281-333 140-198 (554)
457 TIGR03862 flavo_PP4765 unchara 95.7 0.097 2.1E-06 52.8 11.0 123 221-348 12-160 (376)
458 COG2303 BetA Choline dehydroge 95.7 0.012 2.7E-07 62.6 4.8 37 56-92 5-41 (542)
459 PF00890 FAD_binding_2: FAD bi 95.7 0.11 2.4E-06 53.6 11.7 55 279-333 142-201 (417)
460 COG3380 Predicted NAD/FAD-depe 95.7 0.054 1.2E-06 50.8 8.1 34 225-272 3-36 (331)
461 PF04820 Trp_halogenase: Trypt 95.6 0.14 3.1E-06 53.3 12.4 49 282-333 158-209 (454)
462 PF13454 NAD_binding_9: FAD-NA 95.6 0.11 2.5E-06 45.5 9.9 34 227-269 1-34 (156)
463 PRK06854 adenylylsulfate reduc 95.6 0.16 3.6E-06 55.0 13.0 47 286-332 140-192 (608)
464 KOG4716 Thioredoxin reductase 95.6 0.0081 1.8E-07 57.7 2.6 104 57-177 197-302 (503)
465 TIGR01810 betA choline dehydro 95.5 0.013 2.7E-07 62.7 4.2 33 60-92 1-34 (532)
466 TIGR01812 sdhA_frdA_Gneg succi 95.5 0.15 3.3E-06 54.9 12.4 49 284-332 135-188 (566)
467 PRK07121 hypothetical protein; 95.4 0.25 5.3E-06 52.3 13.4 53 280-332 179-236 (492)
468 COG1004 Ugd Predicted UDP-gluc 95.4 0.071 1.5E-06 52.9 8.5 33 59-91 1-33 (414)
469 PRK05945 sdhA succinate dehydr 95.3 0.17 3.8E-06 54.5 12.1 52 282-333 139-195 (575)
470 TIGR01470 cysG_Nterm siroheme 95.3 0.021 4.5E-07 52.6 4.2 33 58-90 9-41 (205)
471 PLN02785 Protein HOTHEAD 95.3 0.021 4.5E-07 61.4 4.8 36 56-92 53-88 (587)
472 PF13450 NAD_binding_8: NAD(P) 95.3 0.03 6.5E-07 41.4 4.3 32 228-273 1-32 (68)
473 KOG1800 Ferredoxin/adrenodoxin 95.2 0.051 1.1E-06 53.3 6.7 87 225-333 22-118 (468)
474 KOG4254 Phytoene desaturase [C 95.1 0.017 3.6E-07 57.8 3.2 51 56-106 12-62 (561)
475 PRK06719 precorrin-2 dehydroge 95.1 0.029 6.3E-07 49.2 4.4 34 57-90 12-45 (157)
476 COG3573 Predicted oxidoreducta 95.1 0.024 5.3E-07 54.4 4.0 35 58-92 5-39 (552)
477 COG4529 Uncharacterized protei 95.1 0.15 3.2E-06 52.0 9.8 36 225-271 3-38 (474)
478 PRK06175 L-aspartate oxidase; 94.9 0.24 5.2E-06 51.4 11.2 54 279-332 129-186 (433)
479 PF01210 NAD_Gly3P_dh_N: NAD-d 94.8 0.026 5.5E-07 49.7 3.2 32 60-91 1-32 (157)
480 COG3634 AhpF Alkyl hydroperoxi 94.8 0.071 1.5E-06 51.6 6.3 107 222-335 210-325 (520)
481 PRK07573 sdhA succinate dehydr 94.7 0.32 7E-06 53.0 12.1 46 287-332 179-229 (640)
482 KOG0405 Pyridine nucleotide-di 94.7 0.049 1.1E-06 52.8 5.0 105 55-179 186-291 (478)
483 PRK08255 salicylyl-CoA 5-hydro 94.7 0.12 2.6E-06 57.6 9.0 35 225-271 2-36 (765)
484 PRK06452 sdhA succinate dehydr 94.6 0.35 7.6E-06 52.0 12.0 50 283-332 141-195 (566)
485 PRK06263 sdhA succinate dehydr 94.5 0.34 7.5E-06 51.8 11.7 53 281-333 137-195 (543)
486 PRK06718 precorrin-2 dehydroge 94.5 0.046 9.9E-07 50.2 4.3 34 57-90 9-42 (202)
487 PRK02705 murD UDP-N-acetylmura 94.5 0.035 7.6E-07 58.1 3.9 33 60-92 2-34 (459)
488 PRK14106 murD UDP-N-acetylmura 94.4 0.18 3.9E-06 52.7 9.1 75 222-333 4-78 (450)
489 PRK05335 tRNA (uracil-5-)-meth 94.4 0.046 9.9E-07 55.7 4.4 35 224-272 3-37 (436)
490 PRK06718 precorrin-2 dehydroge 94.3 0.17 3.7E-06 46.4 7.6 33 222-268 9-41 (202)
491 TIGR00551 nadB L-aspartate oxi 94.2 0.53 1.1E-05 49.7 12.0 55 279-333 129-187 (488)
492 PRK09231 fumarate reductase fl 94.2 0.55 1.2E-05 50.7 12.3 42 291-332 147-193 (582)
493 TIGR02352 thiamin_ThiO glycine 94.2 0.34 7.5E-06 48.1 10.2 81 248-333 109-191 (337)
494 PF01488 Shikimate_DH: Shikima 94.1 0.11 2.4E-06 44.3 5.7 88 222-346 11-98 (135)
495 KOG0029 Amine oxidase [Seconda 94.0 0.062 1.3E-06 56.4 4.5 38 222-273 14-51 (501)
496 COG0569 TrkA K+ transport syst 94.0 0.052 1.1E-06 50.8 3.5 33 59-91 1-33 (225)
497 KOG3851 Sulfide:quinone oxidor 94.0 0.033 7.2E-07 53.3 2.1 94 224-333 40-143 (446)
498 PRK07804 L-aspartate oxidase; 94.0 0.58 1.3E-05 50.0 11.9 54 280-333 146-208 (541)
499 PRK08401 L-aspartate oxidase; 93.9 0.61 1.3E-05 48.9 11.9 50 280-333 122-173 (466)
500 PRK05329 anaerobic glycerol-3- 93.9 0.14 3.1E-06 52.5 6.9 94 62-174 219-317 (422)
No 1
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=100.00 E-value=4.5e-68 Score=506.20 Aligned_cols=420 Identities=60% Similarity=0.991 Sum_probs=378.9
Q ss_pred CcchhhHHhhhhhhccCCCcchhhhhhhccccceeEeeccccCCCCCCCCCCCCCCCCCeEEEECCcHHHHHHHHhccCC
Q 010217 1 MRGYTFYERVSRAFHDYSSLSKLIVISTVGGGSLIAYSEANASSDAYSVAPPEMGIKKKKVVVLGTGWAGTSFLKNLNNP 80 (515)
Q Consensus 1 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AGlsaA~~L~~~ 80 (515)
|.....+.+..+..+.+++..+...++.++++....|.+.++... .+..+....+++|||+|+||+|.+++..|...
T Consensus 1 m~~~~~~~r~s~~~~~~~s~~k~l~~st~~g~~~~~y~~an~~~~---~~~~~~~~kKk~vVVLGsGW~a~S~lk~ldts 77 (491)
T KOG2495|consen 1 MLFLSSLARISRTTSSSKSTLKILLASTLSGGGLVAYSEANPSEK---VPGPKNGGKKKRVVVLGSGWGAISLLKKLDTS 77 (491)
T ss_pred CchhhhHHhhccccccCcchhhhhhhheeccceeEEEecCCcccc---CCCCCCCCCCceEEEEcCchHHHHHHHhcccc
Confidence 455566777777777888888999999999999989986664443 12234556789999999999999999999999
Q ss_pred CCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceE
Q 010217 81 SYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEF 160 (515)
Q Consensus 81 g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~ 160 (515)
-|+|+||+|+++|.|+|++|+..+|+++.++++++++.+.++.+..+.|++++++.||++.+.|+++...+.. ...++
T Consensus 78 ~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eAec~~iDp~~k~V~~~s~t~~~--~~~e~ 155 (491)
T KOG2495|consen 78 LYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEAECTKIDPDNKKVHCRSLTADS--SDKEF 155 (491)
T ss_pred ccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEecccEeecccccEEEEeeeccCC--Cccee
Confidence 9999999999999999999999999999999999999999988777889999999999999999998755321 13467
Q ss_pred EeecCEEEEccCCCcCCCCCCCCCCccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHH
Q 010217 161 CMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAA 240 (515)
Q Consensus 161 ~~~~d~lviAtG~~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~ 240 (515)
.+.||+||+|+|+.++++++||..+++++++.++|+++++.++.++++.+++|.+++++|++..++|||||||+|+|+|.
T Consensus 156 ~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAa 235 (491)
T KOG2495|consen 156 VIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAA 235 (491)
T ss_pred eecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHhhCcccCCCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEeCCeEEEEecCCCceE
Q 010217 241 ELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETS 320 (515)
Q Consensus 241 ~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~v~~~~~~~G~~~ 320 (515)
+|+++..+|+.+.||+++...+||+++..+++|++|+..+.++.++.+.+.||++.+++.|+.+.+..+.... .+|+..
T Consensus 236 EL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~~I~~~~-~~g~~~ 314 (491)
T KOG2495|consen 236 ELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVTEKTIHAKT-KDGEIE 314 (491)
T ss_pred HHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeecccEEEeecCcEEEEEc-CCCcee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888876 488888
Q ss_pred EEecCeEEEccCCCCccchHHHHHHhCCCCCCceeeCCCccccCCCCEEEeccccccCccchHHHHHHHHHhhccCCCCC
Q 010217 321 SMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKADKDNSGT 400 (515)
Q Consensus 321 ~i~~D~vi~a~G~~~~p~~~~l~~~~~~~~~g~i~vd~~l~t~~~~~IyA~GD~~~~~~~~~~~~~~~~~~~a~~~~~g~ 400 (515)
+||+.+++|+||.+++|.+..|.++++-..+.++.||++||+.+.+||||+|||+..
T Consensus 315 ~iPYG~lVWatG~~~rp~~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~----------------------- 371 (491)
T KOG2495|consen 315 EIPYGLLVWATGNGPRPVIKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQ----------------------- 371 (491)
T ss_pred eecceEEEecCCCCCchhhhhHhhcCCccCceeeeeeceeeccCcCceEEecccccc-----------------------
Confidence 999999999999999999988888776544679999999999999999999999942
Q ss_pred CCHHHHHHHHHhhhhhCCcceeecccCcccchhHhHHhhhccccccccccCHHHHHHHHhchhcCCCCChHHHHHHhhhh
Q 010217 401 LTVKEFQEVIKDICERYPQVELYLKNKKMGDFGDLLKEAKGDVAQDAVELNIEEFKKALSEVDSQMKNLPATAQVAAQQG 480 (515)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~aq~a~q~g 480 (515)
+.+++|||+|.|||
T Consensus 372 ------------------------------------------------------------------~~~~~tAQVA~QqG 385 (491)
T KOG2495|consen 372 ------------------------------------------------------------------RGLKPTAQVAEQQG 385 (491)
T ss_pred ------------------------------------------------------------------ccCccHHHHHHHHH
Confidence 22567999999999
Q ss_pred HHHHHHhhhhhhhhcCCCCCc-cccCCCCcccCCCC
Q 010217 481 KYLAKCFNRMEEAEKNPEGPL-RFRGTGRHRFQPFR 515 (515)
Q Consensus 481 ~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 515 (515)
.||||+||.+.+.+.-|..|- ++++.+.|.|.||+
T Consensus 386 ~yLAk~fn~m~k~~~~~e~~~~r~~~~~~~~f~PF~ 421 (491)
T KOG2495|consen 386 AYLAKNFNKMGKGGNLPEGPSARLRGEGRHQFKPFK 421 (491)
T ss_pred HHHHHHHHHHhcccCCCccchhhhhhhhhhccCCcc
Confidence 999999999999988877776 77788888899984
No 2
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=7.1e-55 Score=429.49 Aligned_cols=343 Identities=37% Similarity=0.627 Sum_probs=298.9
Q ss_pred CCCeEEEECCcHHHHHHHHhccCC--CCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEE
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNP--SYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAEC 134 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~--g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v 134 (515)
++++|||||||++|+.+|..|.+. +++|||||+++++.|+|+++.+..|.++..++..+++.++++.+ +++|++++|
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~-~v~~~~~~V 80 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSG-NVQFVQGEV 80 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccC-ceEEEEEEE
Confidence 468999999999999999999975 49999999999999999999999999999999999999999666 466899999
Q ss_pred EEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCCCCCCCCccccccChhHHHHHHHHHHHHHHhcCCCC
Q 010217 135 FKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPN 214 (515)
Q Consensus 135 ~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 214 (515)
++||+++++|.+.+.. .+.||+||||+|+.++.+++||+.++++.+++++||.++++++..+|+.++.+.
T Consensus 81 ~~ID~~~k~V~~~~~~----------~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~ 150 (405)
T COG1252 81 TDIDRDAKKVTLADLG----------EISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEE 150 (405)
T ss_pred EEEcccCCEEEeCCCc----------cccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999998633 799999999999999999999999999999999999999999999999887543
Q ss_pred CCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccccccHHHHHHHHHHhhcCCeE
Q 010217 215 LSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGID 294 (515)
Q Consensus 215 ~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~ 294 (515)
.. +...+|+|||||++|+|+|.+|.++..+.+.+ |.......+|+++++.+++||.+++.+++++++.|++.||+
T Consensus 151 ~~----~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~-~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~ 225 (405)
T COG1252 151 DD----RALLTIVIVGGGPTGVELAGELAERLHRLLKK-FRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVE 225 (405)
T ss_pred cc----cceeEEEEECCChhHHHHHHHHHHHHHHHhhh-hcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCE
Confidence 22 24568999999999999999999998776665 33332367999999999999999999999999999999999
Q ss_pred EEcCcEEEEEeCCeEEEEecCCCceEEEecCeEEEccCCCCccchHHHHHHhCCCCCCceeeCCCccccCCCCEEEeccc
Q 010217 295 VKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEWLRVEGSDSIYALGDC 374 (515)
Q Consensus 295 v~~~~~v~~i~~~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~~~~~~g~i~vd~~l~t~~~~~IyA~GD~ 374 (515)
+++++.|++++++++++.+ |+. +|+||++|||+|+..+|.++.+ .....+.+|++.||++||++++|+|||+|||
T Consensus 226 v~l~~~Vt~v~~~~v~~~~---g~~-~I~~~tvvWaaGv~a~~~~~~l-~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~ 300 (405)
T COG1252 226 VLLGTPVTEVTPDGVTLKD---GEE-EIPADTVVWAAGVRASPLLKDL-SGLETDRRGRLVVNPTLQVPGHPDIFAAGDC 300 (405)
T ss_pred EEcCCceEEECCCcEEEcc---CCe-eEecCEEEEcCCCcCChhhhhc-ChhhhccCCCEEeCCCcccCCCCCeEEEecc
Confidence 9999999999999988865 443 5999999999999777766544 1123367799999999999999999999999
Q ss_pred cccCccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhhhhhCCcceeecccCcccchhHhHHhhhccccccccccCHHH
Q 010217 375 ATVNQRRVMEDIAAIFSKADKDNSGTLTVKEFQEVIKDICERYPQVELYLKNKKMGDFGDLLKEAKGDVAQDAVELNIEE 454 (515)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (515)
+..+..
T Consensus 301 A~~~~~-------------------------------------------------------------------------- 306 (405)
T COG1252 301 AAVIDP-------------------------------------------------------------------------- 306 (405)
T ss_pred ccCCCC--------------------------------------------------------------------------
Confidence 985321
Q ss_pred HHHHHhchhcCCCCChHHHHHHhhhhHHHHHHhhhhhhhhcCCCCCccccCCCC
Q 010217 455 FKKALSEVDSQMKNLPATAQVAAQQGKYLAKCFNRMEEAEKNPEGPLRFRGTGR 508 (515)
Q Consensus 455 ~~~~l~~~d~~~~~~~~~aq~a~q~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (515)
..+|+|||.|.|||.|+++.+.+..+. .|..||++...|.
T Consensus 307 ------------~p~P~tAQ~A~Qqg~~~a~ni~~~l~g--~~l~~f~y~~~Gt 346 (405)
T COG1252 307 ------------RPVPPTAQAAHQQGEYAAKNIKARLKG--KPLKPFKYKDKGT 346 (405)
T ss_pred ------------CCCCChhHHHHHHHHHHHHHHHHHhcC--CCCCCCcccceEE
Confidence 347999999999999999977666554 6788999987654
No 3
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=8.7e-47 Score=388.10 Aligned_cols=312 Identities=47% Similarity=0.811 Sum_probs=265.6
Q ss_pred CCCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEE
Q 010217 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAEC 134 (515)
Q Consensus 55 ~~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v 134 (515)
...+++|||||||+||+++|..|...+++|||||+++++.|.|+++.+..+..+.+++..+++..+..+++ +++.++|
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~--~~i~~~V 84 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPN--RYLRAVV 84 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCe--EEEEEEE
Confidence 34568999999999999999999877899999999999999999999999988888888888888887774 4789999
Q ss_pred EEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCCCCCCCCccccccChhHHHHHHHHHHHHHHhcCCCC
Q 010217 135 FKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPN 214 (515)
Q Consensus 135 ~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 214 (515)
+.||++++.|.+..........++..++.||+||||||+.+..+++||..++++.+++++++..+++.+.++++.+..+.
T Consensus 85 ~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~ 164 (424)
T PTZ00318 85 YDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPT 164 (424)
T ss_pred EEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999998832110000001123799999999999999999999998888899999999999999998888777766
Q ss_pred CCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccccccHHHHHHHHHHhhcCCeE
Q 010217 215 LSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGID 294 (515)
Q Consensus 215 ~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~ 294 (515)
.+.+.+++.++|+|||||++|+|+|.+|..+.++...+.||.++++.+|+++++.+++++.+++.+.+.+++.|++.||+
T Consensus 165 ~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~ 244 (424)
T PTZ00318 165 TSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVD 244 (424)
T ss_pred CChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCE
Confidence 65555566679999999999999999999988877778888887889999999999999999999999999999999999
Q ss_pred EEcCcEEEEEeCCeEEEEecCCCceEEEecCeEEEccCCCCccchHHHHHHhCC--CCCCceeeCCCccccCCCCEEEec
Q 010217 295 VKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--TNRRALATDEWLRVEGSDSIYALG 372 (515)
Q Consensus 295 v~~~~~v~~i~~~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~~~--~~~g~i~vd~~l~t~~~~~IyA~G 372 (515)
++++++|.++.++.+.+ ++|++ +++|++||++|+.+++ +++.+++ +.+|+|.||++||++++|||||+|
T Consensus 245 v~~~~~v~~v~~~~v~~---~~g~~--i~~d~vi~~~G~~~~~----~~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiG 315 (424)
T PTZ00318 245 IRTKTAVKEVLDKEVVL---KDGEV--IPTGLVVWSTGVGPGP----LTKQLKVDKTSRGRISVDDHLRVKPIPNVFALG 315 (424)
T ss_pred EEeCCeEEEEeCCEEEE---CCCCE--EEccEEEEccCCCCcc----hhhhcCCcccCCCcEEeCCCcccCCCCCEEEEe
Confidence 99999999999887654 45774 9999999999964433 4555665 567999999999977999999999
Q ss_pred ccccc
Q 010217 373 DCATV 377 (515)
Q Consensus 373 D~~~~ 377 (515)
||+..
T Consensus 316 D~a~~ 320 (424)
T PTZ00318 316 DCAAN 320 (424)
T ss_pred ccccC
Confidence 99974
No 4
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=3e-38 Score=319.81 Aligned_cols=278 Identities=24% Similarity=0.411 Sum_probs=229.0
Q ss_pred eEEEECCcHHHHHHHHhcc---CCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEE
Q 010217 60 KVVVLGTGWAGTSFLKNLN---NPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (515)
Q Consensus 60 ~VvIIGgG~AGlsaA~~L~---~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~ 136 (515)
+|||||||+||+++|..|+ ..+++|+|||+++++.+.+.++.+..+....+++..++++++++++++ +..++|+.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~--~~~~~v~~ 78 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGAR--FVIAEATG 78 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCE--EEEEEEEE
Confidence 5999999999999999996 357899999999999998888888777777777888888888888876 56789999
Q ss_pred EecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCCCCCCCCccccccChhHHHHHHHHHHHHHHhcCCCCCC
Q 010217 137 IDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLS 216 (515)
Q Consensus 137 id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 216 (515)
||++++.|.+.++. ++.||+||||||+.+..|++||..++++.+++.+++...+..+..+++..
T Consensus 79 id~~~~~V~~~~g~----------~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 142 (364)
T TIGR03169 79 IDPDRRKVLLANRP----------PLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAP------ 142 (364)
T ss_pred EecccCEEEECCCC----------cccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhcC------
Confidence 99999999887643 79999999999999999999998788888999999888766665433210
Q ss_pred HHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEE
Q 010217 217 DEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVK 296 (515)
Q Consensus 217 ~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~ 296 (515)
...++|+|||||++|+|+|..|.++.++ .....+|+++ ..+.+++.+++.+.+.+++.|++.||+++
T Consensus 143 ----~~~~~vvVvG~G~~g~E~A~~l~~~~~~--------~g~~~~V~li-~~~~~l~~~~~~~~~~~~~~l~~~gV~v~ 209 (364)
T TIGR03169 143 ----PGTKRLAVVGGGAAGVEIALALRRRLPK--------RGLRGQVTLI-AGASLLPGFPAKVRRLVLRLLARRGIEVH 209 (364)
T ss_pred ----CCCceEEEECCCHHHHHHHHHHHHHHHh--------cCCCceEEEE-eCCcccccCCHHHHHHHHHHHHHCCCEEE
Confidence 1346999999999999999999875421 0012589999 66778888888999999999999999999
Q ss_pred cCcEEEEEeCCeEEEEecCCCceEEEecCeEEEccCCCCccchHHHHHHhCC--CCCCceeeCCCccccCCCCEEEeccc
Q 010217 297 LGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--TNRRALATDEWLRVEGSDSIYALGDC 374 (515)
Q Consensus 297 ~~~~v~~i~~~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~~~--~~~g~i~vd~~l~t~~~~~IyA~GD~ 374 (515)
+++.+++++++.+.+ .+|++ +++|.+|||+|. .|+. ++...++ +.+|+|.||+++|++++|+|||+|||
T Consensus 210 ~~~~v~~i~~~~v~~---~~g~~--i~~D~vi~a~G~--~p~~--~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~ 280 (364)
T TIGR03169 210 EGAPVTRGPDGALIL---ADGRT--LPADAILWATGA--RAPP--WLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDC 280 (364)
T ss_pred eCCeeEEEcCCeEEe---CCCCE--EecCEEEEccCC--Chhh--HHHHcCCCcCCCCeEEECCccccCCCCCEEEeeee
Confidence 999999998765443 35664 999999999995 5543 3344554 67799999999998799999999999
Q ss_pred ccc
Q 010217 375 ATV 377 (515)
Q Consensus 375 ~~~ 377 (515)
+..
T Consensus 281 ~~~ 283 (364)
T TIGR03169 281 AVI 283 (364)
T ss_pred eec
Confidence 975
No 5
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=2.9e-38 Score=322.70 Aligned_cols=272 Identities=22% Similarity=0.327 Sum_probs=216.4
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCC--eEEEEcCCCCCccC-Ccc-chhccCcccccccccchHHHHhhcCceEEEEEeE
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSY--DVQVISPRNYFAFT-PLL-PSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAE 133 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~--~V~vie~~~~~~~~-~~~-~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~ 133 (515)
.++|||||||+||++||..|++.++ +|+||++++.+.|. |.+ ..+..+......... ..+++...++++ +....
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~-~~~~~~~~~i~~-~~g~~ 80 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVL-PANWWQENNVHL-HSGVT 80 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccC-CHHHHHHCCCEE-EcCCE
Confidence 4689999999999999999997776 79999999887764 333 333333221111111 245567778775 23567
Q ss_pred EEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCCCCCCC-CccccccChhHHHHHHHHHHHHHHhcCC
Q 010217 134 CFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASL 212 (515)
Q Consensus 134 v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ipG~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 212 (515)
|..+|++.+.|.+.++. .+.||+||||||+.|+.+++++.. ++++.+++.+++.+++..+.
T Consensus 81 V~~id~~~~~v~~~~g~----------~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~-------- 142 (396)
T PRK09754 81 IKTLGRDTRELVLTNGE----------SWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQ-------- 142 (396)
T ss_pred EEEEECCCCEEEECCCC----------EEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHhh--------
Confidence 99999999988886543 799999999999999888776643 66788889999988876542
Q ss_pred CCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccccc-ccHHHHHHHHHHhhcC
Q 010217 213 PNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM-FDKRITAFAEEKFSRD 291 (515)
Q Consensus 213 ~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~-~~~~~~~~~~~~l~~~ 291 (515)
.+++++|||+|++|+|+|..|.++ +.+||++++.+.+++. +++.+.+.+.+.+++.
T Consensus 143 ---------~~~~vvViGgG~ig~E~A~~l~~~--------------g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~ 199 (396)
T PRK09754 143 ---------PERSVVIVGAGTIGLELAASATQR--------------RCKVTVIELAATVMGRNAPPPVQRYLLQRHQQA 199 (396)
T ss_pred ---------cCCeEEEECCCHHHHHHHHHHHHc--------------CCeEEEEecCCcchhhhcCHHHHHHHHHHHHHC
Confidence 457999999999999999999875 6899999999998875 6888889999999999
Q ss_pred CeEEEcCcEEEEEeCCeEEEEecCCCceEEEecCeEEEccCCCCccchHHHHHHhCCCCCCceeeCCCccccCCCCEEEe
Q 010217 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEWLRVEGSDSIYAL 371 (515)
Q Consensus 292 gV~v~~~~~v~~i~~~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~~~~~~g~i~vd~~l~t~~~~~IyA~ 371 (515)
||++++++.+++++.++...+.+.+|+. ++||.||+++| ..|++ .|++.+++..+++|.||+++|| +.|+|||+
T Consensus 200 GV~i~~~~~V~~i~~~~~~~v~l~~g~~--i~aD~Vv~a~G--~~pn~-~l~~~~gl~~~~gi~vd~~~~t-s~~~IyA~ 273 (396)
T PRK09754 200 GVRILLNNAIEHVVDGEKVELTLQSGET--LQADVVIYGIG--ISAND-QLAREANLDTANGIVIDEACRT-CDPAIFAG 273 (396)
T ss_pred CCEEEeCCeeEEEEcCCEEEEEECCCCE--EECCEEEECCC--CChhh-HHHHhcCCCcCCCEEECCCCcc-CCCCEEEc
Confidence 9999999999999754322233466774 99999999999 57877 6778888855678999999998 99999999
Q ss_pred ccccccC
Q 010217 372 GDCATVN 378 (515)
Q Consensus 372 GD~~~~~ 378 (515)
|||+..+
T Consensus 274 GD~a~~~ 280 (396)
T PRK09754 274 GDVAITR 280 (396)
T ss_pred cceEeee
Confidence 9999753
No 6
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=1.8e-38 Score=327.81 Aligned_cols=274 Identities=20% Similarity=0.331 Sum_probs=222.9
Q ss_pred CCeEEEECCcHHHHHHHHhccCC--CCeEEEEcCCCCCccCC-ccchhccCcccccc-ccc-chHHHHhhcCceEEEEEe
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNP--SYDVQVISPRNYFAFTP-LLPSVTCGTVEARS-IVE-PVRNIVRKKNVDICFWEA 132 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~--g~~V~vie~~~~~~~~~-~~~~~~~g~~~~~~-~~~-~~~~~~~~~~i~v~~~~~ 132 (515)
+++|||||||+||++||..|++. +++|+|||+++++.|.+ .++.+..+.....+ ... ....+..+.++++ +.++
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v-~~~~ 79 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITV-KTYH 79 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEE-EeCC
Confidence 35899999999999999999854 78999999999988875 67776655544322 222 2244556678876 3578
Q ss_pred EEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCCCCCCCCccccccChhHHHHHHHHHHHHHHhcCC
Q 010217 133 ECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASL 212 (515)
Q Consensus 133 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 212 (515)
+|+.||++++.|.+.++. +++..++.||+||||||++|+.|++++ ++++.+++++++..+++.+..
T Consensus 80 ~V~~Id~~~~~v~~~~~~-----~~~~~~~~yd~lviAtGs~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~------- 145 (438)
T PRK13512 80 EVIAINDERQTVTVLNRK-----TNEQFEESYDKLILSPGASANSLGFES--DITFTLRNLEDTDAIDQFIKA------- 145 (438)
T ss_pred EEEEEECCCCEEEEEECC-----CCcEEeeecCEEEECCCCCCCCCCCCC--CCeEEecCHHHHHHHHHHHhh-------
Confidence 899999999999988643 233446899999999999998877654 567778888888887766532
Q ss_pred CCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccccccHHHHHHHHHHhhcCC
Q 010217 213 PNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDG 292 (515)
Q Consensus 213 ~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~g 292 (515)
..+++++|||||++|+|+|..|.++ +.+|+++++.+++++.+++++.+.+.+.|++.|
T Consensus 146 --------~~~~~vvViGgG~ig~E~A~~l~~~--------------g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~g 203 (438)
T PRK13512 146 --------NQVDKALVVGAGYISLEVLENLYER--------------GLHPTLIHRSDKINKLMDADMNQPILDELDKRE 203 (438)
T ss_pred --------cCCCEEEEECCCHHHHHHHHHHHhC--------------CCcEEEEecccccchhcCHHHHHHHHHHHHhcC
Confidence 1356999999999999999999875 689999999999999999999999999999999
Q ss_pred eEEEcCcEEEEEeCCeEEEEecCCCceEEEecCeEEEccCCCCccchHHHHHHhCC--CCCCceeeCCCccccCCCCEEE
Q 010217 293 IDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--TNRRALATDEWLRVEGSDSIYA 370 (515)
Q Consensus 293 V~v~~~~~v~~i~~~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~~~--~~~g~i~vd~~l~t~~~~~IyA 370 (515)
|+++++++++++++..+++ .+|+. +++|.|+||+| ..|++ .+++..++ +++|+|.||+++|| ++|+|||
T Consensus 204 I~i~~~~~v~~i~~~~v~~---~~g~~--~~~D~vl~a~G--~~pn~-~~l~~~gl~~~~~G~i~Vd~~~~t-~~~~IyA 274 (438)
T PRK13512 204 IPYRLNEEIDAINGNEVTF---KSGKV--EHYDMIIEGVG--THPNS-KFIESSNIKLDDKGFIPVNDKFET-NVPNIYA 274 (438)
T ss_pred CEEEECCeEEEEeCCEEEE---CCCCE--EEeCEEEECcC--CCcCh-HHHHhcCcccCCCCcEEECCCccc-CCCCEEE
Confidence 9999999999998765544 34664 89999999999 67887 56777776 56789999999998 9999999
Q ss_pred ecccccc
Q 010217 371 LGDCATV 377 (515)
Q Consensus 371 ~GD~~~~ 377 (515)
+|||+..
T Consensus 275 ~GD~~~~ 281 (438)
T PRK13512 275 IGDIITS 281 (438)
T ss_pred eeeeEEe
Confidence 9999863
No 7
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=4.7e-37 Score=335.49 Aligned_cols=273 Identities=21% Similarity=0.367 Sum_probs=226.4
Q ss_pred CCeEEEECCcHHHHHHHHhccC----CCCeEEEEcCCCCCccCC-ccchhccCcccccccccchHHHHhhcCceEEEEEe
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNN----PSYDVQVISPRNYFAFTP-LLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEA 132 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~----~g~~V~vie~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~ 132 (515)
+++|||||+|+||+++|..|++ .+++||||++++++.|.+ .++.+..+. ..+++......++.+.++++ +...
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~-~~~~l~~~~~~~~~~~gI~~-~~g~ 80 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHH-TAEELSLVREGFYEKHGIKV-LVGE 80 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCC-CHHHccCCCHHHHHhCCCEE-EcCC
Confidence 4689999999999999999863 468999999999988765 455554443 34455556677888899886 3456
Q ss_pred EEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCCCCCCC-CccccccChhHHHHHHHHHHHHHHhcC
Q 010217 133 ECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKAS 211 (515)
Q Consensus 133 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ipG~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~ 211 (515)
.|+.||++.+.|.+.++. .+.||+||||||+.|+.|++||.+ .+++.+++++++.+++..+
T Consensus 81 ~V~~Id~~~~~V~~~~G~----------~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~-------- 142 (847)
T PRK14989 81 RAITINRQEKVIHSSAGR----------TVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACA-------- 142 (847)
T ss_pred EEEEEeCCCcEEEECCCc----------EEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHH--------
Confidence 799999998888876543 799999999999999999999986 4577888999998887654
Q ss_pred CCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccc-cccHHHHHHHHHHhhc
Q 010217 212 LPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN-MFDKRITAFAEEKFSR 290 (515)
Q Consensus 212 ~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~-~~~~~~~~~~~~~l~~ 290 (515)
..+++++|||||++|+|+|..|.++ +.+|+++++.+++++ .+++...+.+.+.|++
T Consensus 143 ---------~~~k~vvVIGgG~iGlE~A~~L~~~--------------G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~ 199 (847)
T PRK14989 143 ---------RRSKRGAVVGGGLLGLEAAGALKNL--------------GVETHVIEFAPMLMAEQLDQMGGEQLRRKIES 199 (847)
T ss_pred ---------hcCCeEEEECCCHHHHHHHHHHHHc--------------CCeEEEEeccccchhhhcCHHHHHHHHHHHHH
Confidence 2457999999999999999999986 689999999999887 5899999999999999
Q ss_pred CCeEEEcCcEEEEEeCC---eEEEEecCCCceEEEecCeEEEccCCCCccchHHHHHHhCC--CCCCceeeCCCccccCC
Q 010217 291 DGIDVKLGSMVVKVTDK---EIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--TNRRALATDEWLRVEGS 365 (515)
Q Consensus 291 ~gV~v~~~~~v~~i~~~---~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~~~--~~~g~i~vd~~l~t~~~ 365 (515)
.||++++++.+++|.++ ....+...+|+. +++|+||+|+| ..|++ .|+++.++ +.+|+|.||++||| +.
T Consensus 200 ~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~--i~~D~Vv~A~G--~rPn~-~L~~~~Gl~~~~~G~I~VD~~l~T-s~ 273 (847)
T PRK14989 200 MGVRVHTSKNTLEIVQEGVEARKTMRFADGSE--LEVDFIVFSTG--IRPQD-KLATQCGLAVAPRGGIVINDSCQT-SD 273 (847)
T ss_pred CCCEEEcCCeEEEEEecCCCceEEEEECCCCE--EEcCEEEECCC--cccCc-hHHhhcCccCCCCCcEEECCCCcC-CC
Confidence 99999999999999642 233333457774 99999999999 57887 57888887 67789999999998 89
Q ss_pred CCEEEeccccccCc
Q 010217 366 DSIYALGDCATVNQ 379 (515)
Q Consensus 366 ~~IyA~GD~~~~~~ 379 (515)
|+|||+|||+....
T Consensus 274 p~IYAiGD~a~~~~ 287 (847)
T PRK14989 274 PDIYAIGECASWNN 287 (847)
T ss_pred CCEEEeecceeEcC
Confidence 99999999998744
No 8
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=7.4e-37 Score=317.77 Aligned_cols=277 Identities=26% Similarity=0.416 Sum_probs=221.4
Q ss_pred CeEEEECCcHHHHHHHHhccCC--CCeEEEEcCCCCCccCC-ccchhccCccc-ccccccchHHHHhhcCceEEEEEeEE
Q 010217 59 KKVVVLGTGWAGTSFLKNLNNP--SYDVQVISPRNYFAFTP-LLPSVTCGTVE-ARSIVEPVRNIVRKKNVDICFWEAEC 134 (515)
Q Consensus 59 ~~VvIIGgG~AGlsaA~~L~~~--g~~V~vie~~~~~~~~~-~~~~~~~g~~~-~~~~~~~~~~~~~~~~i~v~~~~~~v 134 (515)
++|||||||+||++||..|++. +++|+|||+++++.|.+ .++++..+... ..++.....+.+.+.++++ +.+++|
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~-~~~~~V 79 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDV-KTEHEV 79 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeE-EecCEE
Confidence 4899999999999999999865 46899999999988764 45555444322 2334555566777888876 357899
Q ss_pred EEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCCCCCCC-CccccccChhHHHHHHHHHHHHHHhcCCC
Q 010217 135 FKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASLP 213 (515)
Q Consensus 135 ~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ipG~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 213 (515)
+.||++++.|.+.+.. +++...+.||+||||||++|+.|++||.+ ++++.+++.+++.++++.+..
T Consensus 80 ~~id~~~~~v~~~~~~-----~~~~~~~~yd~lviAtG~~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~-------- 146 (444)
T PRK09564 80 VKVDAKNKTITVKNLK-----TGSIFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELLKD-------- 146 (444)
T ss_pred EEEECCCCEEEEEECC-----CCCEEEecCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhh--------
Confidence 9999999999887521 22223445999999999999999999986 677778888888887776532
Q ss_pred CCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccc-cccHHHHHHHHHHhhcCC
Q 010217 214 NLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN-MFDKRITAFAEEKFSRDG 292 (515)
Q Consensus 214 ~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~-~~~~~~~~~~~~~l~~~g 292 (515)
..+++|+|||+|++|+|+|..+.++ +.+|+++++.+++++ .+++++.+.+.+.+++.|
T Consensus 147 -------~~~~~vvVvGgG~~g~e~A~~l~~~--------------g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~g 205 (444)
T PRK09564 147 -------EEIKNIVIIGAGFIGLEAVEAAKHL--------------GKNVRIIQLEDRILPDSFDKEITDVMEEELRENG 205 (444)
T ss_pred -------cCCCEEEEECCCHHHHHHHHHHHhc--------------CCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCC
Confidence 1457999999999999999998875 679999999998887 589999999999999999
Q ss_pred eEEEcCcEEEEEeCCe-EEEEecCCCceEEEecCeEEEccCCCCccchHHHHHHhCC--CCCCceeeCCCccccCCCCEE
Q 010217 293 IDVKLGSMVVKVTDKE-IFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--TNRRALATDEWLRVEGSDSIY 369 (515)
Q Consensus 293 V~v~~~~~v~~i~~~~-v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~~~--~~~g~i~vd~~l~t~~~~~Iy 369 (515)
|++++++++.++++++ +...... +. +++||.+|+|+| ..|++ .++++.++ +.+|+|.||+++|| ++||||
T Consensus 206 I~v~~~~~v~~i~~~~~~~~v~~~-~~--~i~~d~vi~a~G--~~p~~-~~l~~~gl~~~~~g~i~vd~~~~t-~~~~Iy 278 (444)
T PRK09564 206 VELHLNEFVKSLIGEDKVEGVVTD-KG--EYEADVVIVATG--VKPNT-EFLEDTGLKTLKNGAIIVDEYGET-SIENIY 278 (444)
T ss_pred CEEEcCCEEEEEecCCcEEEEEeC-CC--EEEcCEEEECcC--CCcCH-HHHHhcCccccCCCCEEECCCccc-CCCCEE
Confidence 9999999999997543 3333323 33 399999999999 57777 67788877 56789999999998 999999
Q ss_pred Eecccccc
Q 010217 370 ALGDCATV 377 (515)
Q Consensus 370 A~GD~~~~ 377 (515)
|+|||+..
T Consensus 279 A~GD~~~~ 286 (444)
T PRK09564 279 AAGDCATI 286 (444)
T ss_pred EeeeEEEE
Confidence 99999985
No 9
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=1.4e-36 Score=308.49 Aligned_cols=271 Identities=23% Similarity=0.377 Sum_probs=218.9
Q ss_pred CCeEEEECCcHHHHHHHHhccC--CCCeEEEEcCCCCCcc-CCccchhccCccccccccc-chHHHHhhcCceEEEEEeE
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNN--PSYDVQVISPRNYFAF-TPLLPSVTCGTVEARSIVE-PVRNIVRKKNVDICFWEAE 133 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~--~g~~V~vie~~~~~~~-~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~i~v~~~~~~ 133 (515)
+++|||||||+||+++|..|++ .+.+||||++++...| .|.++....+.....++.. ...++++++++++ +.+++
T Consensus 2 ~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~-~~~~~ 80 (377)
T PRK04965 2 SNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRL-FPHTW 80 (377)
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEE-ECCCE
Confidence 4699999999999999999985 4578999999887655 4566666665555555554 3567778889876 34678
Q ss_pred EEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCCCCCCCCccccccChhHHHHHHHHHHHHHHhcCCC
Q 010217 134 CFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLP 213 (515)
Q Consensus 134 v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 213 (515)
|+.||++.+.+.+. + ..+.||+||||||+.|..|++||.+. ++.+++..++..++..+
T Consensus 81 V~~id~~~~~v~~~-~----------~~~~yd~LVlATG~~~~~p~i~G~~~-v~~~~~~~~~~~~~~~~---------- 138 (377)
T PRK04965 81 VTDIDAEAQVVKSQ-G----------NQWQYDKLVLATGASAFVPPIPGREL-MLTLNSQQEYRAAETQL---------- 138 (377)
T ss_pred EEEEECCCCEEEEC-C----------eEEeCCEEEECCCCCCCCCCCCCCce-EEEECCHHHHHHHHHHh----------
Confidence 99999998888753 1 17999999999999999999999754 67778888877665543
Q ss_pred CCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccccc-ccHHHHHHHHHHhhcCC
Q 010217 214 NLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM-FDKRITAFAEEKFSRDG 292 (515)
Q Consensus 214 ~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~-~~~~~~~~~~~~l~~~g 292 (515)
..+++++|||+|++|+|+|..|.+. +.+|+++++.+++++. +++.+.+.+++.+++.|
T Consensus 139 -------~~~~~vvViGgG~~g~e~A~~L~~~--------------g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~g 197 (377)
T PRK04965 139 -------RDAQRVLVVGGGLIGTELAMDLCRA--------------GKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMG 197 (377)
T ss_pred -------hcCCeEEEECCCHHHHHHHHHHHhc--------------CCeEEEEecCCcccchhCCHHHHHHHHHHHHhCC
Confidence 2457999999999999999999874 6899999999998876 58889999999999999
Q ss_pred eEEEcCcEEEEEeCC--eEEEEecCCCceEEEecCeEEEccCCCCccchHHHHHHhCCCCCCceeeCCCccccCCCCEEE
Q 010217 293 IDVKLGSMVVKVTDK--EIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEWLRVEGSDSIYA 370 (515)
Q Consensus 293 V~v~~~~~v~~i~~~--~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~~~~~~g~i~vd~~l~t~~~~~IyA 370 (515)
|++++++.+.+++.+ .+.+. +.+|++ ++||.||+|+| ..|++ .+++..++..+++|.||++||| +.|+|||
T Consensus 198 V~i~~~~~v~~i~~~~~~~~v~-~~~g~~--i~~D~vI~a~G--~~p~~-~l~~~~gl~~~~gi~vd~~l~t-s~~~VyA 270 (377)
T PRK04965 198 VHLLLKSQLQGLEKTDSGIRAT-LDSGRS--IEVDAVIAAAG--LRPNT-ALARRAGLAVNRGIVVDSYLQT-SAPDIYA 270 (377)
T ss_pred CEEEECCeEEEEEccCCEEEEE-EcCCcE--EECCEEEECcC--CCcch-HHHHHCCCCcCCCEEECCCccc-CCCCEEE
Confidence 999999999999753 33333 356764 99999999999 46776 6778888844445999999998 8999999
Q ss_pred eccccccCc
Q 010217 371 LGDCATVNQ 379 (515)
Q Consensus 371 ~GD~~~~~~ 379 (515)
+|||+..+.
T Consensus 271 ~GD~a~~~~ 279 (377)
T PRK04965 271 LGDCAEING 279 (377)
T ss_pred eeecEeECC
Confidence 999998643
No 10
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=4.6e-37 Score=311.17 Aligned_cols=271 Identities=24% Similarity=0.337 Sum_probs=210.0
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCc---------------------------ccc
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGT---------------------------VEA 109 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~---------------------------~~~ 109 (515)
..+|+||||+||||..||..+++.|.+|.+||+...+|++++..++.+-. .+.
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~ 82 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDF 82 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCH
Confidence 46899999999999999999999999999999998888876544432211 011
Q ss_pred cccc-----------cchHHHHhhcCceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCC
Q 010217 110 RSIV-----------EPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (515)
Q Consensus 110 ~~~~-----------~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~ 178 (515)
.++. ..+..+++..+++ ++.+++..++ .++|.+... +...+.++++|||||++|..|
T Consensus 83 ~~~~~~k~~v~~~~~~~~~~l~~~~~V~--vi~G~a~f~~--~~~v~V~~~--------~~~~~~a~~iiIATGS~p~~~ 150 (454)
T COG1249 83 EKLLARKDKVVRLLTGGVEGLLKKNGVD--VIRGEARFVD--PHTVEVTGE--------DKETITADNIIIATGSRPRIP 150 (454)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhCCCE--EEEEEEEECC--CCEEEEcCC--------CceEEEeCEEEEcCCCCCcCC
Confidence 0111 1233445566766 5788888888 457776542 134899999999999999999
Q ss_pred CCCCCCCccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccC
Q 010217 179 NTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVK 258 (515)
Q Consensus 179 ~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~ 258 (515)
++||.++..+ +.+ +++.. +.. -+++++|||||++|+|+|..++++
T Consensus 151 ~~~~~~~~~~-~~s-~~~l~-------------~~~-------lP~~lvIiGgG~IGlE~a~~~~~L------------- 195 (454)
T COG1249 151 PGPGIDGARI-LDS-SDALF-------------LLE-------LPKSLVIVGGGYIGLEFASVFAAL------------- 195 (454)
T ss_pred CCCCCCCCeE-Eec-hhhcc-------------ccc-------CCCEEEEECCCHHHHHHHHHHHHc-------------
Confidence 9999864321 111 11111 112 235999999999999999999998
Q ss_pred CCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEeCC--eEEEEecCCCceEEEecCeEEEccCCCCc
Q 010217 259 DSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK--EIFTKVRGNGETSSMPYGMVVWSTGIAPH 336 (515)
Q Consensus 259 ~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~v~~~~~~~G~~~~i~~D~vi~a~G~~~~ 336 (515)
|++||++++.+++||.+|+++++.+.+.|++.|+++++++.+++++.+ ++.+. .++|+..++++|.|++|+| +.
T Consensus 196 -G~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~-~~~g~~~~~~ad~vLvAiG--R~ 271 (454)
T COG1249 196 -GSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVT-LEDGEGGTIEADAVLVAIG--RK 271 (454)
T ss_pred -CCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEE-EecCCCCEEEeeEEEEccC--Cc
Confidence 689999999999999999999999999999999999999999999753 24433 3455433589999999999 89
Q ss_pred cchHHH-HHHhCC--CCCCceeeCCCccccCCCCEEEeccccccCc
Q 010217 337 AIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQ 379 (515)
Q Consensus 337 p~~~~l-~~~~~~--~~~g~i~vd~~l~t~~~~~IyA~GD~~~~~~ 379 (515)
||++.| +++.|+ +.+|+|.||++++| |+|||||+|||+..++
T Consensus 272 Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~T-nvp~IyA~GDV~~~~~ 316 (454)
T COG1249 272 PNTDGLGLENAGVELDDRGFIKVDDQMTT-NVPGIYAIGDVIGGPM 316 (454)
T ss_pred cCCCCCChhhcCceECCCCCEEeCCcccc-CCCCEEEeeccCCCcc
Confidence 999777 899998 67799999966665 8999999999988776
No 11
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=2.1e-36 Score=331.02 Aligned_cols=271 Identities=19% Similarity=0.385 Sum_probs=228.7
Q ss_pred EEEECCcHHHHHHHHhccC---CCCeEEEEcCCCCCccCC-ccchhccCcccccccccchHHHHhhcCceEEEEEeEEEE
Q 010217 61 VVVLGTGWAGTSFLKNLNN---PSYDVQVISPRNYFAFTP-LLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (515)
Q Consensus 61 VvIIGgG~AGlsaA~~L~~---~g~~V~vie~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~ 136 (515)
|||||||+||++||..|++ .+++||||++++++.|.. .++.+..|....+++..+..+++++.++++ +.+.+|+.
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~-~~g~~V~~ 79 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITL-YTGETVIQ 79 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEE-EcCCeEEE
Confidence 6999999999999988763 568999999999988764 566777777666777777788899999886 34668999
Q ss_pred EecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCCCCCCC-CccccccChhHHHHHHHHHHHHHHhcCCCCC
Q 010217 137 IDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASLPNL 215 (515)
Q Consensus 137 id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ipG~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 215 (515)
||+..+.|.+.++. ++.||+||||||+.|+.|++||.+ ++++.+++++++..++..+.
T Consensus 80 Id~~~k~V~~~~g~----------~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~~----------- 138 (785)
T TIGR02374 80 IDTDQKQVITDAGR----------TLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMAQ----------- 138 (785)
T ss_pred EECCCCEEEECCCc----------EeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhh-----------
Confidence 99999998887543 799999999999999999999986 56788899999888776542
Q ss_pred CHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccccc-ccHHHHHHHHHHhhcCCeE
Q 010217 216 SDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM-FDKRITAFAEEKFSRDGID 294 (515)
Q Consensus 216 ~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~-~~~~~~~~~~~~l~~~gV~ 294 (515)
.+++++|||||++|+|+|..|.++ +.+|+++++.+++++. +++.....+.+.+++.||+
T Consensus 139 ------~~k~vvVVGgG~~GlE~A~~L~~~--------------G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~ 198 (785)
T TIGR02374 139 ------RFKKAAVIGGGLLGLEAAVGLQNL--------------GMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLT 198 (785)
T ss_pred ------cCCeEEEECCCHHHHHHHHHHHhc--------------CCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCE
Confidence 457999999999999999999986 6899999999998874 8999999999999999999
Q ss_pred EEcCcEEEEEeCCe-EEEEecCCCceEEEecCeEEEccCCCCccchHHHHHHhCCCCCCceeeCCCccccCCCCEEEecc
Q 010217 295 VKLGSMVVKVTDKE-IFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEWLRVEGSDSIYALGD 373 (515)
Q Consensus 295 v~~~~~v~~i~~~~-v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~~~~~~g~i~vd~~l~t~~~~~IyA~GD 373 (515)
+++++.++++.+++ +..+.+.+|+. +++|+||+++| ..|++ .|++++++..+|+|.||++||| +.|+|||+||
T Consensus 199 v~~~~~v~~i~~~~~~~~v~~~dG~~--i~~D~Vi~a~G--~~Pn~-~la~~~gl~~~ggI~Vd~~~~T-s~p~IyA~GD 272 (785)
T TIGR02374 199 FLLEKDTVEIVGATKADRIRFKDGSS--LEADLIVMAAG--IRPND-ELAVSAGIKVNRGIIVNDSMQT-SDPDIYAVGE 272 (785)
T ss_pred EEeCCceEEEEcCCceEEEEECCCCE--EEcCEEEECCC--CCcCc-HHHHhcCCccCCCEEECCCccc-CCCCEEEeee
Confidence 99999999997543 33333457774 99999999999 47777 6778888855588999999998 9999999999
Q ss_pred ccccCc
Q 010217 374 CATVNQ 379 (515)
Q Consensus 374 ~~~~~~ 379 (515)
|+..+.
T Consensus 273 ~a~~~~ 278 (785)
T TIGR02374 273 CAEHNG 278 (785)
T ss_pred cceeCC
Confidence 998654
No 12
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=8e-35 Score=301.57 Aligned_cols=263 Identities=22% Similarity=0.323 Sum_probs=199.5
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCc--------------------------ccc--
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGT--------------------------VEA-- 109 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~--------------------------~~~-- 109 (515)
.+||+||||||||++||..+++.|++|+|||+. .+|+++...++.+.. .+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKK 80 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHH
Confidence 489999999999999999999999999999984 677765433222211 000
Q ss_pred ---------cccccchHHHHhhcCceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCCC
Q 010217 110 ---------RSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNT 180 (515)
Q Consensus 110 ---------~~~~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i 180 (515)
..+...++..+.+.+++ ++.+++..++++ .+.+.. ++ ..+.||+||||||++|+.|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~gV~--~~~g~~~~v~~~--~v~v~~-------~g--~~~~~d~lIiATGs~p~~p~i 147 (446)
T TIGR01424 81 LLQKKDDEIARLSGLYKRLLANAGVE--LLEGRARLVGPN--TVEVLQ-------DG--TTYTAKKILIAVGGRPQKPNL 147 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcE--EEEEEEEEecCC--EEEEec-------CC--eEEEcCEEEEecCCcCCCCCC
Confidence 01222344556677866 567788888865 444431 11 178999999999999999999
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCC
Q 010217 181 PGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDS 260 (515)
Q Consensus 181 pG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~ 260 (515)
||.+. .. +.+++.. ++. .+++++|||+|++|+|+|..+.++ +
T Consensus 148 ~G~~~-~~---~~~~~~~-------------l~~-------~~~~vvVIGgG~~g~E~A~~l~~~--------------G 189 (446)
T TIGR01424 148 PGHEL-GI---TSNEAFH-------------LPT-------LPKSILILGGGYIAVEFAGIWRGL--------------G 189 (446)
T ss_pred CCccc-ee---chHHhhc-------------ccc-------cCCeEEEECCcHHHHHHHHHHHHc--------------C
Confidence 98642 11 2222211 111 346999999999999999999875 6
Q ss_pred cEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEeC--CeEEEEecCCCceEEEecCeEEEccCCCCccc
Q 010217 261 VKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAI 338 (515)
Q Consensus 261 ~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~ 338 (515)
.+|+++++.+.+++.+++++.+.+++.|++.||++++++.+.+++. +++.+.. .+|+. +++|.||+|+| ..|+
T Consensus 190 ~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~-~~g~~--i~~D~viva~G--~~pn 264 (446)
T TIGR01424 190 VQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTL-SHGEE--IVADVVLFATG--RSPN 264 (446)
T ss_pred CeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEE-cCCcE--eecCEEEEeeC--CCcC
Confidence 8999999999999999999999999999999999999999999974 3444433 45654 99999999999 5787
Q ss_pred hHHH-HHHhCC--CCCCceeeCCCccccCCCCEEEeccccccC
Q 010217 339 IKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVN 378 (515)
Q Consensus 339 ~~~l-~~~~~~--~~~g~i~vd~~l~t~~~~~IyA~GD~~~~~ 378 (515)
+..+ ++..++ +.+|+|.||+++|| ++|||||+|||+..+
T Consensus 265 ~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~ 306 (446)
T TIGR01424 265 TKGLGLEAAGVELNDAGAIAVDEYSRT-SIPSIYAVGDVTDRI 306 (446)
T ss_pred CCcCCccccCeEECCCCcEEeCCCCcc-CCCCEEEeeccCCCc
Confidence 7443 566666 57789999999998 999999999999753
No 13
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.5e-34 Score=300.83 Aligned_cols=283 Identities=17% Similarity=0.235 Sum_probs=203.3
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCc--------------------------cccc
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGT--------------------------VEAR 110 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~--------------------------~~~~ 110 (515)
.++||+||||||||++||..|++.|++|+|||+.+.+|++++..++.+.. .+..
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 82 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDID 82 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHH
Confidence 35899999999999999999999999999999987788865433322111 0011
Q ss_pred ccccc-----------hHHHHhhcCceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCC-C
Q 010217 111 SIVEP-----------VRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANT-F 178 (515)
Q Consensus 111 ~~~~~-----------~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~-~ 178 (515)
.+..+ +..++++.+++ ++.+++..++. +.+.+... +++..++.||+||||||++|+. |
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~gV~--~~~g~a~~~~~--~~v~v~~~------~g~~~~~~~d~lViATGs~p~~~p 152 (471)
T PRK06467 83 KMRARKEKVVKQLTGGLAGMAKGRKVT--VVNGLGKFTGG--NTLEVTGE------DGKTTVIEFDNAIIAAGSRPIQLP 152 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEEEccC--CEEEEecC------CCceEEEEcCEEEEeCCCCCCCCC
Confidence 11111 12334556766 66788887764 45555431 1223479999999999999974 4
Q ss_pred CCCCCCCccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccC
Q 010217 179 NTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVK 258 (515)
Q Consensus 179 ~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~ 258 (515)
.+++..+.+ .+.+++..+. ..+++++|||+|++|+|+|..+.++
T Consensus 153 ~~~~~~~~v---~~~~~~~~~~--------------------~~~~~vvIiGgG~iG~E~A~~l~~~------------- 196 (471)
T PRK06467 153 FIPHDDPRI---WDSTDALELK--------------------EVPKRLLVMGGGIIGLEMGTVYHRL------------- 196 (471)
T ss_pred CCCCCCCcE---EChHHhhccc--------------------cCCCeEEEECCCHHHHHHHHHHHHc-------------
Confidence 456543332 2222322210 1346999999999999999999886
Q ss_pred CCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEeC--CeEEEEec-CCCceEEEecCeEEEccCCCC
Q 010217 259 DSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVR-GNGETSSMPYGMVVWSTGIAP 335 (515)
Q Consensus 259 ~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~v~~~~~-~~G~~~~i~~D~vi~a~G~~~ 335 (515)
+.+||++++.+++++.+++++.+.+++.|++. |++++++.+++++. +.+.+... .+|+..++++|.|||++| .
T Consensus 197 -G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G--~ 272 (471)
T PRK06467 197 -GSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVG--R 272 (471)
T ss_pred -CCCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeec--c
Confidence 68999999999999999999999999999988 99999999999973 44444321 223334699999999999 6
Q ss_pred ccchHHH-HHHhCC--CCCCceeeCCCccccCCCCEEEeccccccCccchHHHHHHHHH
Q 010217 336 HAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFS 391 (515)
Q Consensus 336 ~p~~~~l-~~~~~~--~~~g~i~vd~~l~t~~~~~IyA~GD~~~~~~~~~~~~~~~~~~ 391 (515)
.|++..+ ++..++ +++|+|.||+++|| +.|+|||+|||+..+. ....+..++..
T Consensus 273 ~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t-~~p~VyAiGDv~~~~~-la~~A~~eG~~ 329 (471)
T PRK06467 273 VPNGKLLDAEKAGVEVDERGFIRVDKQCRT-NVPHIFAIGDIVGQPM-LAHKGVHEGHV 329 (471)
T ss_pred cccCCccChhhcCceECCCCcEeeCCCccc-CCCCEEEehhhcCCcc-cHHHHHHHHHH
Confidence 8888443 566676 67899999999998 9999999999997543 23334444443
No 14
>PLN02507 glutathione reductase
Probab=100.00 E-value=3.4e-34 Score=299.27 Aligned_cols=270 Identities=20% Similarity=0.273 Sum_probs=203.6
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcC---------CCCCccCCccchhccC--------------------c
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISP---------RNYFAFTPLLPSVTCG--------------------T 106 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~---------~~~~~~~~~~~~~~~g--------------------~ 106 (515)
...+||+||||||||+.||..+++.|.+|+|||+ ...+|++++..++.+. .
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~ 102 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGW 102 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCc
Confidence 3358999999999999999999999999999996 3457777644322111 0
Q ss_pred -------ccccccccc-----------hHHHHhhcCceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEE
Q 010217 107 -------VEARSIVEP-----------VRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLV 168 (515)
Q Consensus 107 -------~~~~~~~~~-----------~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lv 168 (515)
.+...+... ++.++...+++ ++.+++..++++...|.+.+ ++..++.||+||
T Consensus 103 ~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~--~i~g~a~~vd~~~v~V~~~~--------g~~~~~~~d~LI 172 (499)
T PLN02507 103 EINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVK--LYEGEGKIVGPNEVEVTQLD--------GTKLRYTAKHIL 172 (499)
T ss_pred ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE--EEEEEEEEecCCEEEEEeCC--------CcEEEEEcCEEE
Confidence 000011111 12334456655 77889999998755555432 223468999999
Q ss_pred EccCCCcCCCCCCCCCCccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHH
Q 010217 169 IAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDE 248 (515)
Q Consensus 169 iAtG~~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~ 248 (515)
||||++|..|++||.+. . .+.+++..+. ..+++++|||+|++|+|+|..+..+
T Consensus 173 IATGs~p~~p~ipG~~~-~---~~~~~~~~l~--------------------~~~k~vvVIGgG~ig~E~A~~l~~~--- 225 (499)
T PLN02507 173 IATGSRAQRPNIPGKEL-A---ITSDEALSLE--------------------ELPKRAVVLGGGYIAVEFASIWRGM--- 225 (499)
T ss_pred EecCCCCCCCCCCCccc-e---echHHhhhhh--------------------hcCCeEEEECCcHHHHHHHHHHHHc---
Confidence 99999999999999632 1 2333332221 1246999999999999999999876
Q ss_pred HHHhhCcccCCCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEeC--CeEEEEecCCCceEEEecCe
Q 010217 249 DLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGM 326 (515)
Q Consensus 249 ~~~~~~p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D~ 326 (515)
+.+|+++++.+++++.+++++.+.+++.|++.||++++++.|++++. +++.+.. .+|++ +++|.
T Consensus 226 -----------G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~-~~g~~--i~~D~ 291 (499)
T PLN02507 226 -----------GATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVIT-DHGEE--FVADV 291 (499)
T ss_pred -----------CCeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEE-CCCcE--EEcCE
Confidence 68999999999999989999999999999999999999999999974 4454443 45654 99999
Q ss_pred EEEccCCCCccchHHH-HHHhCC--CCCCceeeCCCccccCCCCEEEeccccccCc
Q 010217 327 VVWSTGIAPHAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQ 379 (515)
Q Consensus 327 vi~a~G~~~~p~~~~l-~~~~~~--~~~g~i~vd~~l~t~~~~~IyA~GD~~~~~~ 379 (515)
|+|++| ..|++..+ ++.+++ +.+|+|.||+++|| ++|||||+|||+..+.
T Consensus 292 vl~a~G--~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~T-s~p~IyAiGDv~~~~~ 344 (499)
T PLN02507 292 VLFATG--RAPNTKRLNLEAVGVELDKAGAVKVDEYSRT-NIPSIWAIGDVTNRIN 344 (499)
T ss_pred EEEeec--CCCCCCCCCchhhCcEECCCCcEecCCCCcC-CCCCEEEeeEcCCCCc
Confidence 999999 57877443 567776 67789999999998 9999999999997543
No 15
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.7e-34 Score=301.23 Aligned_cols=282 Identities=23% Similarity=0.368 Sum_probs=202.0
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCc--------------------------cccc
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGT--------------------------VEAR 110 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~--------------------------~~~~ 110 (515)
..+||+||||||||++||..|++.|++|+|||+.. +|++++...+.+.. .+..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 81 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFK 81 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHH
Confidence 35899999999999999999999999999999876 77765433322211 0111
Q ss_pred cccc-----------chHHHHhhcCceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCC
Q 010217 111 SIVE-----------PVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (515)
Q Consensus 111 ~~~~-----------~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ 179 (515)
.+.. .+...+++.+++ ++.++++.++++. +.+.... ++ ..+.||+||||||++|..|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g~~~~~~~~~--~~v~~~~-----~~--~~~~~d~lViAtGs~p~~~- 149 (462)
T PRK06416 82 KVQEWKNGVVNRLTGGVEGLLKKNKVD--IIRGEAKLVDPNT--VRVMTED-----GE--QTYTAKNIILATGSRPREL- 149 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEEEccCCE--EEEecCC-----Cc--EEEEeCEEEEeCCCCCCCC-
Confidence 1111 133455667766 5677888887654 4443211 11 3799999999999998654
Q ss_pred CCCCCCccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCC
Q 010217 180 TPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKD 259 (515)
Q Consensus 180 ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~ 259 (515)
||.......+.+.+++..+. ..+++++|||+|++|+|+|..|.++
T Consensus 150 -pg~~~~~~~v~~~~~~~~~~--------------------~~~~~vvVvGgG~~g~E~A~~l~~~-------------- 194 (462)
T PRK06416 150 -PGIEIDGRVIWTSDEALNLD--------------------EVPKSLVVIGGGYIGVEFASAYASL-------------- 194 (462)
T ss_pred -CCCCCCCCeEEcchHhhCcc--------------------ccCCeEEEECCCHHHHHHHHHHHHc--------------
Confidence 55532212223333332211 1246999999999999999999875
Q ss_pred CcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEeCC--eEEEEecCCCceEEEecCeEEEccCCCCcc
Q 010217 260 SVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK--EIFTKVRGNGETSSMPYGMVVWSTGIAPHA 337 (515)
Q Consensus 260 ~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p 337 (515)
+.+||++++.+++++.+++++.+.+++.|++.||+++++++|.+++.+ .+.+....+|+..+++||.||+|+| ..|
T Consensus 195 g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G--~~p 272 (462)
T PRK06416 195 GAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVG--RRP 272 (462)
T ss_pred CCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeC--Ccc
Confidence 689999999999999999999999999999999999999999999753 4544432234444699999999999 577
Q ss_pred chHHH-HHHhCC-CCCCceeeCCCccccCCCCEEEeccccccCccchHHHHHHHH
Q 010217 338 IIKDF-MKQVGQ-TNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIF 390 (515)
Q Consensus 338 ~~~~l-~~~~~~-~~~g~i~vd~~l~t~~~~~IyA~GD~~~~~~~~~~~~~~~~~ 390 (515)
++..+ ++..++ ..+|+|.||+++|| +.|+|||+|||+..+. ....+..++.
T Consensus 273 ~~~~l~l~~~gl~~~~g~i~vd~~~~t-~~~~VyAiGD~~~~~~-~~~~A~~~g~ 325 (462)
T PRK06416 273 NTENLGLEELGVKTDRGFIEVDEQLRT-NVPNIYAIGDIVGGPM-LAHKASAEGI 325 (462)
T ss_pred CCCCCCchhcCCeecCCEEeECCCCcc-CCCCEEEeeecCCCcc-hHHHHHHHHH
Confidence 77433 466676 23789999999998 9999999999997543 2333444443
No 16
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=2.7e-34 Score=297.44 Aligned_cols=269 Identities=21% Similarity=0.367 Sum_probs=198.1
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCC-CccCCccchhccCcc---------cccccc-----------cch
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY-FAFTPLLPSVTCGTV---------EARSIV-----------EPV 116 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~-~~~~~~~~~~~~g~~---------~~~~~~-----------~~~ 116 (515)
.+|||||||||||++||..|++.|++|+|||+++. +|+++....+.+... +..++. ...
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGKN 82 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999864 576544333222111 111111 112
Q ss_pred HHHHhhcCceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCCCCCCCCccccccChhHH
Q 010217 117 RNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDA 196 (515)
Q Consensus 117 ~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ipG~~~~~~~~~~~~~a 196 (515)
.+.+.+.+++ ++.+++..++ .+.|.+..+. +..++.||+||||||++|+.|++||..+....+ +..+.
T Consensus 83 ~~~~~~~gV~--~~~g~~~~~~--~~~v~v~~~~-------~~~~~~~d~vViATGs~~~~p~i~G~~~~~~v~-~~~~~ 150 (438)
T PRK07251 83 YAMLAGSGVD--LYDAEAHFVS--NKVIEVQAGD-------EKIELTAETIVINTGAVSNVLPIPGLADSKHVY-DSTGI 150 (438)
T ss_pred HHHHHhCCCE--EEEEEEEEcc--CCEEEEeeCC-------CcEEEEcCEEEEeCCCCCCCCCCCCcCCCCcEE-chHHH
Confidence 2345566766 5566676654 5677765421 123799999999999999999999974321111 11111
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccccc
Q 010217 197 QRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMF 276 (515)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~~ 276 (515)
..+ . ..+++|+|||+|++|+|+|..++++ +.+|+++++.+++++.+
T Consensus 151 ~~~-------------~-------~~~~~vvIIGgG~~g~e~A~~l~~~--------------g~~Vtli~~~~~~l~~~ 196 (438)
T PRK07251 151 QSL-------------E-------TLPERLGIIGGGNIGLEFAGLYNKL--------------GSKVTVLDAASTILPRE 196 (438)
T ss_pred hcc-------------h-------hcCCeEEEECCCHHHHHHHHHHHHc--------------CCeEEEEecCCccCCCC
Confidence 111 0 1346999999999999999999875 68999999999999988
Q ss_pred cHHHHHHHHHHhhcCCeEEEcCcEEEEEeCC--eEEEEecCCCceEEEecCeEEEccCCCCccchHHH-HHHhCC--CCC
Q 010217 277 DKRITAFAEEKFSRDGIDVKLGSMVVKVTDK--EIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDF-MKQVGQ--TNR 351 (515)
Q Consensus 277 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l-~~~~~~--~~~ 351 (515)
++++.+.+.+.|++.||++++++++++++.+ .+.+. .+|+ ++++|.||+|+| ..|++..+ ++..++ +.+
T Consensus 197 ~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~--~~g~--~i~~D~viva~G--~~p~~~~l~l~~~~~~~~~~ 270 (438)
T PRK07251 197 EPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVV--TEDE--TYRFDALLYATG--RKPNTEPLGLENTDIELTER 270 (438)
T ss_pred CHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEE--ECCe--EEEcCEEEEeeC--CCCCcccCCchhcCcEECCC
Confidence 9999999999999999999999999999753 34333 2455 499999999999 57777433 444555 567
Q ss_pred CceeeCCCccccCCCCEEEeccccccCc
Q 010217 352 RALATDEWLRVEGSDSIYALGDCATVNQ 379 (515)
Q Consensus 352 g~i~vd~~l~t~~~~~IyA~GD~~~~~~ 379 (515)
|+|.||+++|| +.|+|||+|||+..+.
T Consensus 271 g~i~vd~~~~t-~~~~IyaiGD~~~~~~ 297 (438)
T PRK07251 271 GAIKVDDYCQT-SVPGVFAVGDVNGGPQ 297 (438)
T ss_pred CcEEECCCccc-CCCCEEEeeecCCCcc
Confidence 89999999998 9999999999998643
No 17
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=4.4e-34 Score=298.16 Aligned_cols=280 Identities=19% Similarity=0.262 Sum_probs=205.1
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCc--------------------------cccc
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGT--------------------------VEAR 110 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~--------------------------~~~~ 110 (515)
..+||+||||||||++||.+|++.|++|+|||+.+.+|+++....+.+.. .+..
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFA 83 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHH
Confidence 35899999999999999999999999999999987788765333221110 0000
Q ss_pred ccc-----------cchHHHHhhcCceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCC
Q 010217 111 SIV-----------EPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (515)
Q Consensus 111 ~~~-----------~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ 179 (515)
.+. ..+..++.+.+++ ++.+++..++.. .+.+... +++...+.||+||||||+.|..|+
T Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g~~~~~~~~--~~~v~~~------~g~~~~~~~d~lviATGs~p~~p~ 153 (461)
T PRK05249 84 DLLARADHVINKQVEVRRGQYERNRVD--LIQGRARFVDPH--TVEVECP------DGEVETLTADKIVIATGSRPYRPP 153 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCE--EEEEEEEEecCC--EEEEEeC------CCceEEEEcCEEEEcCCCCCCCCC
Confidence 111 1133445667766 567778888765 4444321 122347999999999999999888
Q ss_pred CCCCCC-ccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccC
Q 010217 180 TPGVEE-NCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVK 258 (515)
Q Consensus 180 ipG~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~ 258 (515)
+++... .++ +.++...+ . ..+++++|||+|++|+|+|..++++
T Consensus 154 ~~~~~~~~v~---~~~~~~~~-------------~-------~~~~~v~IiGgG~~g~E~A~~l~~~------------- 197 (461)
T PRK05249 154 DVDFDHPRIY---DSDSILSL-------------D-------HLPRSLIIYGAGVIGCEYASIFAAL------------- 197 (461)
T ss_pred CCCCCCCeEE---cHHHhhch-------------h-------hcCCeEEEECCCHHHHHHHHHHHHc-------------
Confidence 777542 221 22211111 0 1346999999999999999999986
Q ss_pred CCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEe--CCeEEEEecCCCceEEEecCeEEEccCCCCc
Q 010217 259 DSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGIAPH 336 (515)
Q Consensus 259 ~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~ 336 (515)
+.+|+|+++.+++++.+++++.+.+.+.+++.||++++++.+++++ ++++.+. ..+|+. +++|.|++|+| ..
T Consensus 198 -g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~-~~~g~~--i~~D~vi~a~G--~~ 271 (461)
T PRK05249 198 -GVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVH-LKSGKK--IKADCLLYANG--RT 271 (461)
T ss_pred -CCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEE-ECCCCE--EEeCEEEEeec--CC
Confidence 6899999999999999999999999999999999999999999997 3445544 345664 99999999999 57
Q ss_pred cchHHH-HHHhCC--CCCCceeeCCCccccCCCCEEEeccccccCccchHHHHHHHH
Q 010217 337 AIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIF 390 (515)
Q Consensus 337 p~~~~l-~~~~~~--~~~g~i~vd~~l~t~~~~~IyA~GD~~~~~~~~~~~~~~~~~ 390 (515)
|++..+ ++.+++ +.+|+|.||+++|| +.|+|||+|||+..+. ....++.++.
T Consensus 272 p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~IyAiGD~~~~~~-~~~~A~~~g~ 326 (461)
T PRK05249 272 GNTDGLNLENAGLEADSRGQLKVNENYQT-AVPHIYAVGDVIGFPS-LASASMDQGR 326 (461)
T ss_pred ccccCCCchhhCcEecCCCcEeeCCCccc-CCCCEEEeeecCCCcc-cHhHHHHHHH
Confidence 887443 566676 67889999999998 9999999999997544 2333444433
No 18
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=4.9e-35 Score=309.80 Aligned_cols=280 Identities=21% Similarity=0.259 Sum_probs=196.5
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhc---cCc--ccccccccchHHHHhhcCceEEEEE
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVT---CGT--VEARSIVEPVRNIVRKKNVDICFWE 131 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~---~g~--~~~~~~~~~~~~~~~~~~i~v~~~~ 131 (515)
..+||+|||||||||+||.+|++.|++|+|||++. +++........ ++. ....++...++..++.++++ +..
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~--~~~ 79 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVK--FLQ 79 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCE--Eec
Confidence 35899999999999999999999999999999864 55432211111 111 12235556677777788876 457
Q ss_pred eEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCCCCCCCC----ccccccChhHHHHHHHHHHHHH
Q 010217 132 AECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEE----NCNFLKEVEDAQRIRRNVIESF 207 (515)
Q Consensus 132 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ipG~~~----~~~~~~~~~~a~~~~~~~~~~~ 207 (515)
++|+.++..++...+... ++ .+.||+||||||++|+.|++||.+. .++++...+
T Consensus 80 ~~V~~i~~~~~~~~V~~~------~g---~~~a~~lVlATGa~p~~~~ipG~~~~~~~~v~~~~~~~------------- 137 (555)
T TIGR03143 80 AEVLDVDFDGDIKTIKTA------RG---DYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCD------------- 137 (555)
T ss_pred cEEEEEEecCCEEEEEec------CC---EEEEeEEEECCCCccCCCCCCCHHHhCCceEEEEeecC-------------
Confidence 889999887654444432 11 5789999999999999999999642 111111110
Q ss_pred HhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccccccHHHHHHHHHH
Q 010217 208 EKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEK 287 (515)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~ 287 (515)
.....+++|+|||||++|+|+|..|.++ +.+|+++++.+.+.. +... ....
T Consensus 138 ----------~~~~~g~~VvVIGgG~~g~E~A~~L~~~--------------g~~Vtli~~~~~~~~--~~~~---~~~~ 188 (555)
T TIGR03143 138 ----------GEFFTGMDVFVIGGGFAAAEEAVFLTRY--------------ASKVTVIVREPDFTC--AKLI---AEKV 188 (555)
T ss_pred ----------hhhcCCCEEEEECCCHHHHHHHHHHHcc--------------CCEEEEEEeCCcccc--CHHH---HHHH
Confidence 0113567999999999999999999875 689999999886532 2222 2333
Q ss_pred hhcCCeEEEcCcEEEEEeCCe-E---EEEecCCCceEEE--ecCe----EEEccCCCCccchHHHHHH-hCCCCCCceee
Q 010217 288 FSRDGIDVKLGSMVVKVTDKE-I---FTKVRGNGETSSM--PYGM----VVWSTGIAPHAIIKDFMKQ-VGQTNRRALAT 356 (515)
Q Consensus 288 l~~~gV~v~~~~~v~~i~~~~-v---~~~~~~~G~~~~i--~~D~----vi~a~G~~~~p~~~~l~~~-~~~~~~g~i~v 356 (515)
+++.||++++++.|+++.+++ + .+....+|+..++ +||. |+|++| ..|++ .+++. +.++.+|+|.|
T Consensus 189 ~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G--~~Pn~-~l~~~~l~l~~~G~I~v 265 (555)
T TIGR03143 189 KNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVG--YAPSS-ELFKGVVELDKRGYIPT 265 (555)
T ss_pred HhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccccccceEEEEEeC--CCCCh-hHHhhhcccCCCCeEEe
Confidence 456799999999999997643 3 2333345765444 4777 999999 57887 45543 33467899999
Q ss_pred CCCccccCCCCEEEeccccccCccchHHHHHHHHHhhc
Q 010217 357 DEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKAD 394 (515)
Q Consensus 357 d~~l~t~~~~~IyA~GD~~~~~~~~~~~~~~~~~~~a~ 394 (515)
|++++| ++|+|||+|||+......+..|+.++..++.
T Consensus 266 d~~~~T-s~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~ 302 (555)
T TIGR03143 266 NEDMET-NVPGVYAAGDLRPKELRQVVTAVADGAIAAT 302 (555)
T ss_pred CCcccc-CCCCEEEceeccCCCcchheeHHhhHHHHHH
Confidence 999998 9999999999986544455556666555443
No 19
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=4.1e-34 Score=295.95 Aligned_cols=263 Identities=21% Similarity=0.285 Sum_probs=195.4
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCc---------------------------cccc
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGT---------------------------VEAR 110 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~---------------------------~~~~ 110 (515)
.+||+||||||||++||..|++.|++|+|||+. .+|++++...+.+.. .+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWP 80 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHH
Confidence 589999999999999999999999999999985 577765433222211 0100
Q ss_pred c-----------cccchHHHHhhcCceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCC-
Q 010217 111 S-----------IVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF- 178 (515)
Q Consensus 111 ~-----------~~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~- 178 (515)
. +...+...+.+.++++ +.+++...+ .++|.+. + ..+.||+||||||++|+.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~--~~g~~~~~~--~~~v~v~--------~---~~~~~d~vIiAtGs~p~~p~ 145 (450)
T TIGR01421 81 ELKEKRDAYVDRLNGIYQKNLEKNKVDV--IFGHARFTK--DGTVEVN--------G---RDYTAPHILIATGGKPSFPE 145 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEEEEEEcc--CCEEEEC--------C---EEEEeCEEEEecCCCCCCCC
Confidence 1 1112334456667764 445554443 4466552 1 1689999999999999988
Q ss_pred CCCCCCCccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccC
Q 010217 179 NTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVK 258 (515)
Q Consensus 179 ~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~ 258 (515)
++||.+ ... +.++... +.. .+++++|||||++|+|+|..|+.+
T Consensus 146 ~i~g~~-~~~---~~~~~~~-------------~~~-------~~~~vvIIGgG~iG~E~A~~l~~~------------- 188 (450)
T TIGR01421 146 NIPGAE-LGT---DSDGFFA-------------LEE-------LPKRVVIVGAGYIAVELAGVLHGL------------- 188 (450)
T ss_pred CCCCCc-eeE---cHHHhhC-------------ccc-------cCCeEEEECCCHHHHHHHHHHHHc-------------
Confidence 899864 111 1111111 111 235999999999999999999986
Q ss_pred CCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEeCC--e-EEEEecCCCceEEEecCeEEEccCCCC
Q 010217 259 DSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK--E-IFTKVRGNGETSSMPYGMVVWSTGIAP 335 (515)
Q Consensus 259 ~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~-v~~~~~~~G~~~~i~~D~vi~a~G~~~ 335 (515)
+.+||++++.+++++.+|+++.+.+++.|++.||++++++.+++++.+ + +.+. ..+|+. +++||.|||++| .
T Consensus 189 -g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~-~~~g~~-~i~~D~vi~a~G--~ 263 (450)
T TIGR01421 189 -GSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIH-FEDGKS-IDDVDELIWAIG--R 263 (450)
T ss_pred -CCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEE-ECCCcE-EEEcCEEEEeeC--C
Confidence 689999999999999999999999999999999999999999999742 2 3333 345632 599999999999 6
Q ss_pred ccchHHH-HHHhCC--CCCCceeeCCCccccCCCCEEEeccccccCc
Q 010217 336 HAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQ 379 (515)
Q Consensus 336 ~p~~~~l-~~~~~~--~~~g~i~vd~~l~t~~~~~IyA~GD~~~~~~ 379 (515)
.|++..+ ++.+++ +.+|+|.||+++|| ++|+|||+|||+..+.
T Consensus 264 ~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T-~~p~IyAiGD~~~~~~ 309 (450)
T TIGR01421 264 KPNTKGLGLENVGIKLNEKGQIIVDEYQNT-NVPGIYALGDVVGKVE 309 (450)
T ss_pred CcCcccCCccccCcEECCCCcEEeCCCCcC-CCCCEEEEEecCCCcc
Confidence 7887443 566776 67899999999998 9999999999998543
No 20
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=4.1e-34 Score=297.15 Aligned_cols=272 Identities=21% Similarity=0.268 Sum_probs=201.4
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccC---------------------c------cccc
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCG---------------------T------VEAR 110 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g---------------------~------~~~~ 110 (515)
.+||+||||||||++||..|++.|++|+|||+. .+|++++...+.+. . .+..
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 82 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWA 82 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHH
Confidence 589999999999999999999999999999986 66765433222111 0 0000
Q ss_pred c-----------cccchHHHHhhcCceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCC
Q 010217 111 S-----------IVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (515)
Q Consensus 111 ~-----------~~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ 179 (515)
. +...+...+.+.+++ ++.+++..++. ++|.+ ++. .+.||+||||||++|+.|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~g~~~~v~~--~~v~~-~g~----------~~~~d~lViATGs~p~~p~ 147 (450)
T PRK06116 83 KLIANRDAYIDRLHGSYRNGLENNGVD--LIEGFARFVDA--HTVEV-NGE----------RYTADHILIATGGRPSIPD 147 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEEEccC--CEEEE-CCE----------EEEeCEEEEecCCCCCCCC
Confidence 1 111223345567766 56777888874 46766 221 7999999999999999999
Q ss_pred CCCCCCccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCC
Q 010217 180 TPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKD 259 (515)
Q Consensus 180 ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~ 259 (515)
+||.+ .++. .++... +. ..+++++|||+|++|+|+|..|.++
T Consensus 148 i~g~~-~~~~---~~~~~~-------------~~-------~~~~~vvViGgG~~g~E~A~~l~~~-------------- 189 (450)
T PRK06116 148 IPGAE-YGIT---SDGFFA-------------LE-------ELPKRVAVVGAGYIAVEFAGVLNGL-------------- 189 (450)
T ss_pred CCCcc-eeEc---hhHhhC-------------cc-------ccCCeEEEECCCHHHHHHHHHHHHc--------------
Confidence 99864 2211 111110 11 1346999999999999999999875
Q ss_pred CcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEeC--Ce-EEEEecCCCceEEEecCeEEEccCCCCc
Q 010217 260 SVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KE-IFTKVRGNGETSSMPYGMVVWSTGIAPH 336 (515)
Q Consensus 260 ~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~-v~~~~~~~G~~~~i~~D~vi~a~G~~~~ 336 (515)
+.+|+++++.+.+++.+++++.+.+.+.|++.||++++++.|.+++. ++ +.+. ..+|+. +++|.||+|+| ..
T Consensus 190 g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~-~~~g~~--i~~D~Vv~a~G--~~ 264 (450)
T PRK06116 190 GSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLT-LEDGET--LTVDCLIWAIG--RE 264 (450)
T ss_pred CCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEE-EcCCcE--EEeCEEEEeeC--CC
Confidence 68999999999999999999999999999999999999999999974 33 4444 346764 99999999999 57
Q ss_pred cchHHH-HHHhCC--CCCCceeeCCCccccCCCCEEEeccccccCccchHHHHHHHH
Q 010217 337 AIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIF 390 (515)
Q Consensus 337 p~~~~l-~~~~~~--~~~g~i~vd~~l~t~~~~~IyA~GD~~~~~~~~~~~~~~~~~ 390 (515)
|++..+ ++.+++ +.+|+|.||+++|| ++|||||+|||+..+. ....++.++.
T Consensus 265 p~~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~~-~~~~A~~~g~ 319 (450)
T PRK06116 265 PNTDGLGLENAGVKLNEKGYIIVDEYQNT-NVPGIYAVGDVTGRVE-LTPVAIAAGR 319 (450)
T ss_pred cCCCCCCchhcCceECCCCcEecCCCCCc-CCCCEEEEeecCCCcC-cHHHHHHHHH
Confidence 887544 566666 67899999999998 9999999999997533 2334444443
No 21
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=7.5e-34 Score=296.07 Aligned_cols=267 Identities=24% Similarity=0.382 Sum_probs=195.3
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhcc--------------------Cc-------cccc
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTC--------------------GT-------VEAR 110 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~--------------------g~-------~~~~ 110 (515)
.+||+||||||||++||.+|++.|++|+|||+. .+++.++..++.+ |. .+..
T Consensus 5 ~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 83 (463)
T PRK06370 5 RYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDFK 83 (463)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCHH
Confidence 589999999999999999999999999999986 4566543332211 11 1111
Q ss_pred ccc-----------cchHHHHhhc-CceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCC
Q 010217 111 SIV-----------EPVRNIVRKK-NVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (515)
Q Consensus 111 ~~~-----------~~~~~~~~~~-~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~ 178 (515)
.+. ..+..++++. ++++ ..++...++ .+.|.+. + .++.||+||||||++|+.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~v--~~g~~~~~~--~~~v~v~--------~---~~~~~d~lViATGs~p~~p 148 (463)
T PRK06370 84 AVMARKRRIRARSRHGSEQWLRGLEGVDV--FRGHARFES--PNTVRVG--------G---ETLRAKRIFINTGARAAIP 148 (463)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhcCCCcEE--EEEEEEEcc--CCEEEEC--------c---EEEEeCEEEEcCCCCCCCC
Confidence 111 1233445555 7664 455555444 4566652 1 1789999999999999999
Q ss_pred CCCCCCCccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccC
Q 010217 179 NTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVK 258 (515)
Q Consensus 179 ~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~ 258 (515)
++||.+... .+ +..+...+ . ..+++|+|||+|++|+|+|..|.++
T Consensus 149 ~i~G~~~~~-~~-~~~~~~~~-------------~-------~~~~~vvVIGgG~~g~E~A~~l~~~------------- 193 (463)
T PRK06370 149 PIPGLDEVG-YL-TNETIFSL-------------D-------ELPEHLVIIGGGYIGLEFAQMFRRF------------- 193 (463)
T ss_pred CCCCCCcCc-eE-cchHhhCc-------------c-------ccCCEEEEECCCHHHHHHHHHHHHc-------------
Confidence 999975321 11 11111110 0 1346999999999999999999885
Q ss_pred CCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEeCC--eEEEEecCCCceEEEecCeEEEccCCCCc
Q 010217 259 DSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK--EIFTKVRGNGETSSMPYGMVVWSTGIAPH 336 (515)
Q Consensus 259 ~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~v~~~~~~~G~~~~i~~D~vi~a~G~~~~ 336 (515)
+.+|+++++.+.+++.+++++.+.+.+.|++.||++++++.+.+++.+ ++.+....++...++++|.||+|+| ..
T Consensus 194 -G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G--~~ 270 (463)
T PRK06370 194 -GSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVG--RV 270 (463)
T ss_pred -CCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcC--CC
Confidence 689999999999999999999999999999999999999999999753 3332221112223599999999999 67
Q ss_pred cchHHH-HHHhCC--CCCCceeeCCCccccCCCCEEEeccccccCc
Q 010217 337 AIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQ 379 (515)
Q Consensus 337 p~~~~l-~~~~~~--~~~g~i~vd~~l~t~~~~~IyA~GD~~~~~~ 379 (515)
|++..| ++..++ +.+|+|.||+++|| +.|+|||+|||+..+.
T Consensus 271 pn~~~l~l~~~g~~~~~~G~i~vd~~l~t-~~~~IyAiGD~~~~~~ 315 (463)
T PRK06370 271 PNTDDLGLEAAGVETDARGYIKVDDQLRT-TNPGIYAAGDCNGRGA 315 (463)
T ss_pred cCCCCcCchhhCceECCCCcEeECcCCcC-CCCCEEEeeecCCCcc
Confidence 887545 667776 67899999999998 9999999999997643
No 22
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=6.4e-34 Score=297.13 Aligned_cols=274 Identities=21% Similarity=0.291 Sum_probs=198.9
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcc--------------------------ccc
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTV--------------------------EAR 110 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~--------------------------~~~ 110 (515)
..+||+||||||||++||.+|++.|.+|+|||+. .+|+++...++.+... +..
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 81 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFA 81 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHH
Confidence 4689999999999999999999999999999986 6777654332211100 000
Q ss_pred cc-------c----cchHHHHhhcCceEEEEEeEEEEEecC-----CCEEEEeeCCccCCCCCceEEeecCEEEEccCCC
Q 010217 111 SI-------V----EPVRNIVRKKNVDICFWEAECFKIDAE-----NKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR 174 (515)
Q Consensus 111 ~~-------~----~~~~~~~~~~~i~v~~~~~~v~~id~~-----~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~ 174 (515)
.+ . ..+..++++.+++ ++.+++..+|++ .+.+.+... +++..++.||+||||||++
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~g~a~~i~~~~~~~~~~~~~v~~~------~g~~~~~~~d~lViATGs~ 153 (472)
T PRK05976 82 KVQERKDGIVDRLTKGVAALLKKGKID--VFHGIGRILGPSIFSPMPGTVSVETE------TGENEMIIPENLLIATGSR 153 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEEEeCCCCCcCCceEEEEEeC------CCceEEEEcCEEEEeCCCC
Confidence 01 1 1122445566755 678899999876 334444321 1212479999999999999
Q ss_pred cCCCCCCCCCCccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhC
Q 010217 175 ANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLY 254 (515)
Q Consensus 175 ~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~ 254 (515)
|+.++.... ...+ +.+.+++..+ . ..+++++|||||++|+|+|..|+++
T Consensus 154 p~~~p~~~~-~~~~-~~~~~~~~~~-------------~-------~~~~~vvIIGgG~~G~E~A~~l~~~--------- 202 (472)
T PRK05976 154 PVELPGLPF-DGEY-VISSDEALSL-------------E-------TLPKSLVIVGGGVIGLEWASMLADF--------- 202 (472)
T ss_pred CCCCCCCCC-CCce-EEcchHhhCc-------------c-------ccCCEEEEECCCHHHHHHHHHHHHc---------
Confidence 965432221 1111 2222332211 1 1246999999999999999999885
Q ss_pred cccCCCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEe---CCeEEEEecCCCceEEEecCeEEEcc
Q 010217 255 PKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVT---DKEIFTKVRGNGETSSMPYGMVVWST 331 (515)
Q Consensus 255 p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~---~~~v~~~~~~~G~~~~i~~D~vi~a~ 331 (515)
+.+|+++++.+++++.+++++.+.+.+.|++.||++++++++++++ ++++......+|+..++++|.||+|+
T Consensus 203 -----g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~ 277 (472)
T PRK05976 203 -----GVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSV 277 (472)
T ss_pred -----CCeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEee
Confidence 6899999999999999999999999999999999999999999997 45555544456765569999999999
Q ss_pred CCCCccchHHH-HHHhCC-CCCCceeeCCCccccCCCCEEEeccccccC
Q 010217 332 GIAPHAIIKDF-MKQVGQ-TNRRALATDEWLRVEGSDSIYALGDCATVN 378 (515)
Q Consensus 332 G~~~~p~~~~l-~~~~~~-~~~g~i~vd~~l~t~~~~~IyA~GD~~~~~ 378 (515)
| ..|++..+ ++.+++ ..+|+|.||++++| +.|+|||+|||+..+
T Consensus 278 G--~~p~~~~l~l~~~~~~~~~g~i~Vd~~l~t-s~~~IyAiGD~~~~~ 323 (472)
T PRK05976 278 G--RRPNTEGIGLENTDIDVEGGFIQIDDFCQT-KERHIYAIGDVIGEP 323 (472)
T ss_pred C--CccCCCCCCchhcCceecCCEEEECCCccc-CCCCEEEeeecCCCc
Confidence 9 57777444 455566 35689999999998 899999999999754
No 23
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=7.2e-34 Score=294.97 Aligned_cols=276 Identities=21% Similarity=0.292 Sum_probs=200.4
Q ss_pred CCCeEEEECCcHHHHHHHHhccCC-CCeEEEEcCC--------CCCccCCccchhccCcc--------------------
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNP-SYDVQVISPR--------NYFAFTPLLPSVTCGTV-------------------- 107 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~-g~~V~vie~~--------~~~~~~~~~~~~~~g~~-------------------- 107 (515)
+.+||+||||||||..||..+++. |.+|+|||+. ..+|++++..++.+-..
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 468999999999999999999986 8999999973 46788754433321110
Q ss_pred --------ccccccc-----------chHHHHhh-cCceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEE
Q 010217 108 --------EARSIVE-----------PVRNIVRK-KNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYL 167 (515)
Q Consensus 108 --------~~~~~~~-----------~~~~~~~~-~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~l 167 (515)
+...+.. .+..++++ .+++ +++++...++. ++|.+....+. .+.....+.||+|
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~--~i~G~a~f~~~--~~v~V~~~~~~--~~~~~~~~~~d~l 155 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLT--FFLGWGALEDK--NVVLVRESADP--KSAVKERLQAEHI 155 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeE--EEEEEEEEccC--CEEEEeeccCC--CCCcceEEECCEE
Confidence 0000111 11223444 3644 77888877764 46766532100 0111347999999
Q ss_pred EEccCCCcCCCCCCCCCCccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhH
Q 010217 168 VIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVD 247 (515)
Q Consensus 168 viAtG~~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~ 247 (515)
|||||++|..|++||.+. ++ +.+++.. +. ..+++++|||||++|+|+|..+..+..
T Consensus 156 IIATGs~p~~p~i~G~~~-~~---~~~~~~~-------------~~-------~~~~~vvIIGgG~iG~E~A~~~~~l~~ 211 (486)
T TIGR01423 156 LLATGSWPQMLGIPGIEH-CI---SSNEAFY-------------LD-------EPPRRVLTVGGGFISVEFAGIFNAYKP 211 (486)
T ss_pred EEecCCCCCCCCCCChhh-ee---chhhhhc-------------cc-------cCCCeEEEECCCHHHHHHHHHHHHhcc
Confidence 999999999999999642 22 2222211 11 134699999999999999998876521
Q ss_pred HHHHhhCcccCCCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEeC--Ce-EEEEecCCCceEEEec
Q 010217 248 EDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KE-IFTKVRGNGETSSMPY 324 (515)
Q Consensus 248 ~~~~~~~p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~-v~~~~~~~G~~~~i~~ 324 (515)
.+.+|+|+++.+++++.+++++.+.+++.|++.||++++++.+++++. ++ ..+. +.+|+ ++++
T Consensus 212 -----------~G~~Vtli~~~~~il~~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~-~~~g~--~i~~ 277 (486)
T TIGR01423 212 -----------RGGKVTLCYRNNMILRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVT-FESGK--TLDV 277 (486)
T ss_pred -----------CCCeEEEEecCCccccccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEE-EcCCC--EEEc
Confidence 268999999999999999999999999999999999999999999973 23 3333 24565 4999
Q ss_pred CeEEEccCCCCccchHHH-HHHhCC--CCCCceeeCCCccccCCCCEEEeccccccCc
Q 010217 325 GMVVWSTGIAPHAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQ 379 (515)
Q Consensus 325 D~vi~a~G~~~~p~~~~l-~~~~~~--~~~g~i~vd~~l~t~~~~~IyA~GD~~~~~~ 379 (515)
|.|+||+| ..|++..+ ++.+++ +.+|+|.||+++|| +.|||||+|||+..++
T Consensus 278 D~vl~a~G--~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l~T-s~~~IyA~GDv~~~~~ 332 (486)
T TIGR01423 278 DVVMMAIG--RVPRTQTLQLDKVGVELTKKGAIQVDEFSRT-NVPNIYAIGDVTDRVM 332 (486)
T ss_pred CEEEEeeC--CCcCcccCCchhhCceECCCCCEecCCCCcC-CCCCEEEeeecCCCcc
Confidence 99999999 67887444 566776 67899999999998 9999999999998543
No 24
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.8e-33 Score=293.32 Aligned_cols=271 Identities=20% Similarity=0.316 Sum_probs=199.4
Q ss_pred CCCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhcc---------------------Ccc------
Q 010217 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTC---------------------GTV------ 107 (515)
Q Consensus 55 ~~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~---------------------g~~------ 107 (515)
....+||+||||||||++||..|++.|.+|+|||+. .+|+++...++.+ |..
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~ 81 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVV 81 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCcc
Confidence 356789999999999999999999999999999986 5666544332211 110
Q ss_pred cccccccc------------hHHHHhhcCceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCc
Q 010217 108 EARSIVEP------------VRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA 175 (515)
Q Consensus 108 ~~~~~~~~------------~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~ 175 (515)
+...+... +...++++ ..+.++.+++..+|.+...|.+.++ +..++.||+||||||++|
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~-~~v~~~~g~v~~id~~~~~V~~~~g--------~~~~~~~d~lViATGs~p 152 (468)
T PRK14694 82 DRSALLAQQQARVEELRESKYQSILREN-AAITVLNGEARFVDERTLTVTLNDG--------GEQTVHFDRAFIGTGARP 152 (468)
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHhcC-CCeEEEEEEEEEecCCEEEEEecCC--------CeEEEECCEEEEeCCCCC
Confidence 00011111 11122222 1355788999999988777776542 134799999999999999
Q ss_pred CCCCCCCCCCccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCc
Q 010217 176 NTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYP 255 (515)
Q Consensus 176 ~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p 255 (515)
+.|++||+++.. ++ +.+++..+. ..+++++|||+|++|+|+|..|.++
T Consensus 153 ~~p~i~G~~~~~-~~-~~~~~~~l~--------------------~~~~~vvViG~G~~G~E~A~~l~~~---------- 200 (468)
T PRK14694 153 AEPPVPGLAETP-YL-TSTSALELD--------------------HIPERLLVIGASVVALELAQAFARL---------- 200 (468)
T ss_pred CCCCCCCCCCCc-eE-cchhhhchh--------------------cCCCeEEEECCCHHHHHHHHHHHHc----------
Confidence 999999986421 11 222222210 1246999999999999999999986
Q ss_pred ccCCCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEeCCe--EEEEecCCCceEEEecCeEEEccCC
Q 010217 256 KVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDKE--IFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 256 ~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~--v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
+.+|+++++ +++++.+++++.+.+++.|++.||++++++.+.+++.++ +.+. ..++ ++++|.||+|+|
T Consensus 201 ----g~~Vtlv~~-~~~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~-~~~~---~i~~D~vi~a~G- 270 (468)
T PRK14694 201 ----GSRVTVLAR-SRVLSQEDPAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILE-TNAG---TLRAEQLLVATG- 270 (468)
T ss_pred ----CCeEEEEEC-CCCCCCCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEE-ECCC---EEEeCEEEEccC-
Confidence 689999987 578888899999999999999999999999999997532 3333 2333 399999999999
Q ss_pred CCccchHHH-HHHhCC-CCCCceeeCCCccccCCCCEEEeccccccCc
Q 010217 334 APHAIIKDF-MKQVGQ-TNRRALATDEWLRVEGSDSIYALGDCATVNQ 379 (515)
Q Consensus 334 ~~~p~~~~l-~~~~~~-~~~g~i~vd~~l~t~~~~~IyA~GD~~~~~~ 379 (515)
..|++..+ ++.+++ ..+|+|.||+++|| ++|+|||+|||+..+.
T Consensus 271 -~~pn~~~l~l~~~g~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~~ 316 (468)
T PRK14694 271 -RTPNTENLNLESIGVETERGAIRIDEHLQT-TVSGIYAAGDCTDQPQ 316 (468)
T ss_pred -CCCCcCCCCchhcCcccCCCeEeeCCCccc-CCCCEEEEeecCCCcc
Confidence 57777333 456676 56788999999998 9999999999998654
No 25
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=7.3e-34 Score=294.50 Aligned_cols=269 Identities=22% Similarity=0.339 Sum_probs=196.4
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCC-CccCCccchhccCcc---------ccc-------ccccch----
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY-FAFTPLLPSVTCGTV---------EAR-------SIVEPV---- 116 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~-~~~~~~~~~~~~g~~---------~~~-------~~~~~~---- 116 (515)
.+||+||||||||++||.+|++.|++|+|||+.+. +|+++....+.+... +.. .....+
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNKN 82 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Confidence 47999999999999999999999999999998764 566543332222110 000 011111
Q ss_pred -HHHHhhcCceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCCCCCCCCccccccChhH
Q 010217 117 -RNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVED 195 (515)
Q Consensus 117 -~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ipG~~~~~~~~~~~~~ 195 (515)
..+.+..+++ ++.+++..++.+...|...+ + ..++.||+||||||++|..|++||+++....+ +..+
T Consensus 83 ~~~~~~~~gv~--~~~g~~~~i~~~~~~v~~~~--------g-~~~~~~d~lviATGs~p~~p~i~G~~~~~~v~-~~~~ 150 (441)
T PRK08010 83 FHNLADMPNID--VIDGQAEFINNHSLRVHRPE--------G-NLEIHGEKIFINTGAQTVVPPIPGITTTPGVY-DSTG 150 (441)
T ss_pred HHHHhhcCCcE--EEEEEEEEecCCEEEEEeCC--------C-eEEEEeCEEEEcCCCcCCCCCCCCccCCCCEE-ChhH
Confidence 1122223654 67788988886543343322 1 23689999999999999999999975321111 1111
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccccc
Q 010217 196 AQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM 275 (515)
Q Consensus 196 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~ 275 (515)
... +. ..+++++|||+|++|+|+|..|.++ +.+|+++++.+.+++.
T Consensus 151 ~~~-------------~~-------~~~~~v~ViGgG~~g~E~A~~l~~~--------------g~~Vtli~~~~~~l~~ 196 (441)
T PRK08010 151 LLN-------------LK-------ELPGHLGILGGGYIGVEFASMFANF--------------GSKVTILEAASLFLPR 196 (441)
T ss_pred hhc-------------cc-------ccCCeEEEECCCHHHHHHHHHHHHC--------------CCeEEEEecCCCCCCC
Confidence 110 11 1345999999999999999999986 6899999999999998
Q ss_pred ccHHHHHHHHHHhhcCCeEEEcCcEEEEEeCC--eEEEEecCCCceEEEecCeEEEccCCCCccchHHH-HHHhCC--CC
Q 010217 276 FDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK--EIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDF-MKQVGQ--TN 350 (515)
Q Consensus 276 ~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l-~~~~~~--~~ 350 (515)
+++++.+.+.+.|++.||++++++.+++++.+ .+.+.. .+++ +++|.|++|+| ..|++..+ ++.+++ +.
T Consensus 197 ~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~-~~g~---i~~D~vl~a~G--~~pn~~~l~~~~~gl~~~~ 270 (441)
T PRK08010 197 EDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHS-EHAQ---LAVDALLIASG--RQPATASLHPENAGIAVNE 270 (441)
T ss_pred cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEE-cCCe---EEeCEEEEeec--CCcCCCCcCchhcCcEECC
Confidence 99999999999999999999999999999743 344432 3343 88999999999 57777433 566666 56
Q ss_pred CCceeeCCCccccCCCCEEEeccccccCc
Q 010217 351 RRALATDEWLRVEGSDSIYALGDCATVNQ 379 (515)
Q Consensus 351 ~g~i~vd~~l~t~~~~~IyA~GD~~~~~~ 379 (515)
+|+|.||+++|| ++|||||+|||+..++
T Consensus 271 ~G~i~vd~~~~T-s~~~IyA~GD~~~~~~ 298 (441)
T PRK08010 271 RGAIVVDKYLHT-TADNIWAMGDVTGGLQ 298 (441)
T ss_pred CCcEEECCCccc-CCCCEEEeeecCCCcc
Confidence 789999999998 9999999999998654
No 26
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=1.7e-33 Score=295.09 Aligned_cols=271 Identities=18% Similarity=0.298 Sum_probs=195.6
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcc-------------------------ccc
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTV-------------------------EAR 110 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~-------------------------~~~ 110 (515)
...+||+|||||+||++||..+++.|.+|+|||++ .+|++++..++.+-.. +..
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~ 124 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLP 124 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHH
Confidence 45789999999999999999999999999999986 5777654433321110 000
Q ss_pred c-------c----ccchHHHHhhcCceEEEEEeEEEEEecCCCEEEEee------------CCccC--------CCCCce
Q 010217 111 S-------I----VEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRS------------SQNTN--------LNGKEE 159 (515)
Q Consensus 111 ~-------~----~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~------------~~~~~--------~~~~~~ 159 (515)
. + ...+...+++.|++ ++.+++..+++. +|.+.. ..... .+++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~G~a~f~~~~--~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g-- 198 (561)
T PTZ00058 125 LLVERRDKYIRRLNDIYRQNLKKDNVE--YFEGKGSLLSEN--QVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDG-- 198 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcE--EEEEEEEEecCC--EEEeeccccccccccccccccceeeeccceecCCC--
Confidence 1 1 11123345566755 667777666533 332200 00000 0121
Q ss_pred EEeecCEEEEccCCCcCCCCCCCCCCccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHH
Q 010217 160 FCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFA 239 (515)
Q Consensus 160 ~~~~~d~lviAtG~~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A 239 (515)
..+.||+||||||++|+.|++||.+ .++ +.++... + ..+++++|||+|++|+|+|
T Consensus 199 ~~i~ad~lVIATGS~P~~P~IpG~~-~v~---ts~~~~~-------------l--------~~pk~VvIIGgG~iGlE~A 253 (561)
T PTZ00058 199 QVIEGKNILIAVGNKPIFPDVKGKE-FTI---SSDDFFK-------------I--------KEAKRIGIAGSGYIAVELI 253 (561)
T ss_pred cEEECCEEEEecCCCCCCCCCCCce-eEE---EHHHHhh-------------c--------cCCCEEEEECCcHHHHHHH
Confidence 2799999999999999999999963 222 2222111 1 1246999999999999999
Q ss_pred HHHHHhhHHHHHhhCcccCCCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEeCC---eEEEEecCC
Q 010217 240 AELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK---EIFTKVRGN 316 (515)
Q Consensus 240 ~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~---~v~~~~~~~ 316 (515)
..+..+ +.+||++++.+++++.+++++.+.+++.|++.||++++++.+.+++++ ++.+.. .+
T Consensus 254 ~~l~~~--------------G~~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~-~~ 318 (561)
T PTZ00058 254 NVVNRL--------------GAESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYL-SD 318 (561)
T ss_pred HHHHHc--------------CCcEEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEE-CC
Confidence 999986 689999999999999999999999999999999999999999999753 344433 23
Q ss_pred CceEEEecCeEEEccCCCCccchHHH-HHHhCC-CCCCceeeCCCccccCCCCEEEecccccc
Q 010217 317 GETSSMPYGMVVWSTGIAPHAIIKDF-MKQVGQ-TNRRALATDEWLRVEGSDSIYALGDCATV 377 (515)
Q Consensus 317 G~~~~i~~D~vi~a~G~~~~p~~~~l-~~~~~~-~~~g~i~vd~~l~t~~~~~IyA~GD~~~~ 377 (515)
+. .++++|.|++|+| ..|++..+ ++.+++ ..+|+|.||+++|| +.|+|||+|||+..
T Consensus 319 ~~-~~i~aD~VlvA~G--r~Pn~~~L~l~~~~~~~~~G~I~VDe~lqT-s~p~IYA~GDv~~~ 377 (561)
T PTZ00058 319 GR-KYEHFDYVIYCVG--RSPNTEDLNLKALNIKTPKGYIKVDDNQRT-SVKHIYAVGDCCMV 377 (561)
T ss_pred CC-EEEECCEEEECcC--CCCCccccCccccceecCCCeEEECcCCcc-CCCCEEEeEeccCc
Confidence 33 2599999999999 68888544 344444 56789999999998 99999999999983
No 27
>PLN02546 glutathione reductase
Probab=100.00 E-value=1.4e-33 Score=295.86 Aligned_cols=263 Identities=21% Similarity=0.326 Sum_probs=197.9
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcC---------CCCCccCCccchhccCcc---------------------
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISP---------RNYFAFTPLLPSVTCGTV--------------------- 107 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~---------~~~~~~~~~~~~~~~g~~--------------------- 107 (515)
.+||+|||+||||+.||..+++.|.+|+|||+ ...+|++++..++.+-..
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~ 158 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKY 158 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCccc
Confidence 47999999999999999999999999999995 134677654433311100
Q ss_pred ------cc-----------cccccchHHHHhhcCceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEc
Q 010217 108 ------EA-----------RSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIA 170 (515)
Q Consensus 108 ------~~-----------~~~~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviA 170 (515)
+. ..+...+...+++.+++ ++.+++..++++ .|.+. +. .+.||+||||
T Consensus 159 ~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~--~i~G~a~~vd~~--~V~v~-G~----------~~~~D~LVIA 223 (558)
T PLN02546 159 ETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVT--LIEGRGKIVDPH--TVDVD-GK----------LYTARNILIA 223 (558)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE--EEEeEEEEccCC--EEEEC-CE----------EEECCEEEEe
Confidence 00 01122334455666755 678888888865 55552 11 7899999999
Q ss_pred cCCCcCCCCCCCCCCccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHH
Q 010217 171 MGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDL 250 (515)
Q Consensus 171 tG~~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~ 250 (515)
||++|..|++||.+ .++ +.+++.. ++ ..+++|+|||+|++|+|+|..|..+
T Consensus 224 TGs~p~~P~IpG~~-~v~---~~~~~l~-------------~~-------~~~k~V~VIGgG~iGvE~A~~L~~~----- 274 (558)
T PLN02546 224 VGGRPFIPDIPGIE-HAI---DSDAALD-------------LP-------SKPEKIAIVGGGYIALEFAGIFNGL----- 274 (558)
T ss_pred CCCCCCCCCCCChh-hcc---CHHHHHh-------------cc-------ccCCeEEEECCCHHHHHHHHHHHhc-----
Confidence 99999999999964 221 2222111 11 1356999999999999999999876
Q ss_pred HhhCcccCCCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEeC--Ce-EEEEecCCCceEEEecCeE
Q 010217 251 FKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KE-IFTKVRGNGETSSMPYGMV 327 (515)
Q Consensus 251 ~~~~p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~-v~~~~~~~G~~~~i~~D~v 327 (515)
+.+|+++++.+++++.+++++.+.+++.|++.||++++++.+.++.. ++ +.+. ..+++ .+.+|.|
T Consensus 275 ---------g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~-~~~g~--~~~~D~V 342 (558)
T PLN02546 275 ---------KSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLK-TNKGT--VEGFSHV 342 (558)
T ss_pred ---------CCeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEE-ECCeE--EEecCEE
Confidence 68999999999999999999999999999999999999999999963 23 4333 23343 2558999
Q ss_pred EEccCCCCccchHHH-HHHhCC--CCCCceeeCCCccccCCCCEEEeccccccCc
Q 010217 328 VWSTGIAPHAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQ 379 (515)
Q Consensus 328 i~a~G~~~~p~~~~l-~~~~~~--~~~g~i~vd~~l~t~~~~~IyA~GD~~~~~~ 379 (515)
||++| ..|++..| ++.+++ +.+|+|.||+++|| ++|+|||+|||+..++
T Consensus 343 iva~G--~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~T-s~p~IYAaGDv~~~~~ 394 (558)
T PLN02546 343 MFATG--RKPNTKNLGLEEVGVKMDKNGAIEVDEYSRT-SVPSIWAVGDVTDRIN 394 (558)
T ss_pred EEeec--cccCCCcCChhhcCCcCCCCCcEeECCCcee-CCCCEEEeeccCCCcc
Confidence 99999 57887444 677776 56789999999998 9999999999998543
No 28
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.9e-34 Score=263.72 Aligned_cols=271 Identities=21% Similarity=0.268 Sum_probs=207.0
Q ss_pred CCCCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCc--------------------c------
Q 010217 54 MGIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGT--------------------V------ 107 (515)
Q Consensus 54 ~~~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~--------------------~------ 107 (515)
.....+|.+|||||.+|+++|+..+..|.++.|+|..-.+|+++...++.+.. .
T Consensus 16 ~~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~ 95 (478)
T KOG0405|consen 16 ADVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGS 95 (478)
T ss_pred ccccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccC
Confidence 34457899999999999999999999999999999775666664332221110 0
Q ss_pred -c-------ccccccchHHH----HhhcCceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCc
Q 010217 108 -E-------ARSIVEPVRNI----VRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA 175 (515)
Q Consensus 108 -~-------~~~~~~~~~~~----~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~ 175 (515)
+ ....+.++..+ +.+.+ +.++.++...+++.+-.|...++. ...+.+.+++||||.+|
T Consensus 96 fdW~~ik~krdayi~RLngIY~~~L~k~~--V~~i~G~a~f~~~~~v~V~~~d~~--------~~~Ytak~iLIAtGg~p 165 (478)
T KOG0405|consen 96 FDWKVIKQKRDAYILRLNGIYKRNLAKAA--VKLIEGRARFVSPGEVEVEVNDGT--------KIVYTAKHILIATGGRP 165 (478)
T ss_pred CcHHHHHhhhhHHHHHHHHHHHhhccccc--eeEEeeeEEEcCCCceEEEecCCe--------eEEEecceEEEEeCCcc
Confidence 0 01111222222 22333 557889998888876666655432 34689999999999999
Q ss_pred CCCCCCCCCCccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCc
Q 010217 176 NTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYP 255 (515)
Q Consensus 176 ~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p 255 (515)
..|+|||.+-. .. +....+|++ .+++++|||+|++++|+|.-++.+
T Consensus 166 ~~PnIpG~E~g-id----------------SDgff~Lee-------~Pkr~vvvGaGYIavE~Agi~~gL---------- 211 (478)
T KOG0405|consen 166 IIPNIPGAELG-ID----------------SDGFFDLEE-------QPKRVVVVGAGYIAVEFAGIFAGL---------- 211 (478)
T ss_pred CCCCCCchhhc-cc----------------cccccchhh-------cCceEEEEccceEEEEhhhHHhhc----------
Confidence 99999997421 11 111122232 446999999999999999999987
Q ss_pred ccCCCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEeC--CeEEEEecCCCceEEEecCeEEEccCC
Q 010217 256 KVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 256 ~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
|.+++++-|.+.+|+.||+.+++.+.+.|+..||++|.++.++++.. ++........|.. -.+|.++||+|
T Consensus 212 ----gsethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i--~~vd~llwAiG- 284 (478)
T KOG0405|consen 212 ----GSETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTI--EDVDTLLWAIG- 284 (478)
T ss_pred ----CCeeEEEEecchhhcchhHHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEecccc--ccccEEEEEec-
Confidence 68999999999999999999999999999999999999999999864 3333333345652 44999999999
Q ss_pred CCccchHHH-HHHhCC--CCCCceeeCCCccccCCCCEEEecccccc
Q 010217 334 APHAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATV 377 (515)
Q Consensus 334 ~~~p~~~~l-~~~~~~--~~~g~i~vd~~l~t~~~~~IyA~GD~~~~ 377 (515)
+.|++..| ++..|+ +.+|.|+||+|.+| |+|+||++||++..
T Consensus 285 -R~Pntk~L~le~vGVk~~~~g~IivDeYq~T-nvp~I~avGDv~gk 329 (478)
T KOG0405|consen 285 -RKPNTKGLNLENVGVKTDKNGAIIVDEYQNT-NVPSIWAVGDVTGK 329 (478)
T ss_pred -CCCCcccccchhcceeeCCCCCEEEeccccC-CCCceEEeccccCc
Confidence 89999888 888888 78999999999998 99999999999974
No 29
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=1.3e-33 Score=294.46 Aligned_cols=267 Identities=22% Similarity=0.307 Sum_probs=198.2
Q ss_pred CeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccC-------------------c------ccc----
Q 010217 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCG-------------------T------VEA---- 109 (515)
Q Consensus 59 ~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g-------------------~------~~~---- 109 (515)
+||+||||||||++||..|++.|.+|+|||+.. ++++++..++.+. . .+.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL 79 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence 589999999999999999999999999999875 7776543222110 0 000
Q ss_pred ---ccccc-----chHHHHhhcCceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCCCC
Q 010217 110 ---RSIVE-----PVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTP 181 (515)
Q Consensus 110 ---~~~~~-----~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ip 181 (515)
+++.. .+..++++.+++ ++.+++..++ .++|.+.++ ...+.||+||||||++|+.|++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~gv~--~~~g~~~~~~--~~~v~v~~g---------~~~~~~~~lIiATGs~p~~p~i~ 146 (463)
T TIGR02053 80 EGKREVVEELRHEKYEDVLSSYGVD--YLRGRARFKD--PKTVKVDLG---------REVRGAKRFLIATGARPAIPPIP 146 (463)
T ss_pred HHHHHHHHHHhhhhHHHHHHhCCcE--EEEEEEEEcc--CCEEEEcCC---------eEEEEeCEEEEcCCCCCCCCCCC
Confidence 01111 133456667766 5677777765 456766431 12689999999999999999999
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCc
Q 010217 182 GVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSV 261 (515)
Q Consensus 182 G~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~ 261 (515)
|.+... +.+.+++..+ . ..+++++|||+|++|+|+|..|.++ +.
T Consensus 147 G~~~~~--~~~~~~~~~~-------------~-------~~~~~vvIIGgG~~g~E~A~~l~~~--------------g~ 190 (463)
T TIGR02053 147 GLKEAG--YLTSEEALAL-------------D-------RIPESLAVIGGGAIGVELAQAFARL--------------GS 190 (463)
T ss_pred CcccCc--eECchhhhCc-------------c-------cCCCeEEEECCCHHHHHHHHHHHHc--------------CC
Confidence 975421 1222221110 0 1236999999999999999999886 68
Q ss_pred EEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEeCC--eEEEEecCCCceEEEecCeEEEccCCCCccch
Q 010217 262 KITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK--EIFTKVRGNGETSSMPYGMVVWSTGIAPHAII 339 (515)
Q Consensus 262 ~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~ 339 (515)
+|+++++.+++++.+++++...+++.+++.||+++++++|++++.+ .+.+....++...++++|.||+|+| ..|++
T Consensus 191 ~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G--~~p~~ 268 (463)
T TIGR02053 191 EVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATG--RRPNT 268 (463)
T ss_pred cEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeEC--CCcCC
Confidence 9999999999999999999999999999999999999999999743 3333221222223599999999999 67887
Q ss_pred HHH-HHHhCC--CCCCceeeCCCccccCCCCEEEeccccccC
Q 010217 340 KDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVN 378 (515)
Q Consensus 340 ~~l-~~~~~~--~~~g~i~vd~~l~t~~~~~IyA~GD~~~~~ 378 (515)
..| ++..++ +.+|+|.||++||| +.|+|||+|||+..+
T Consensus 269 ~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~VyAiGD~~~~~ 309 (463)
T TIGR02053 269 DGLGLEKAGVKLDERGGILVDETLRT-SNPGIYAAGDVTGGL 309 (463)
T ss_pred CCCCccccCCEECCCCcEeECCCccC-CCCCEEEeeecCCCc
Confidence 545 666666 67899999999998 999999999999864
No 30
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=6.9e-33 Score=273.17 Aligned_cols=277 Identities=18% Similarity=0.246 Sum_probs=198.7
Q ss_pred CeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccc----hhcc--CcccccccccchHHHHhhcCceEEEEEe
Q 010217 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLP----SVTC--GTVEARSIVEPVRNIVRKKNVDICFWEA 132 (515)
Q Consensus 59 ~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~----~~~~--g~~~~~~~~~~~~~~~~~~~i~v~~~~~ 132 (515)
+||+|||||+||++||..|++.|++|+|||+.+ .++..... .++. ......++..++++.++++++++. .+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~--~~ 77 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEII--YE 77 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEE--EE
Confidence 589999999999999999999999999999876 33321111 1110 012223566777888888898764 37
Q ss_pred EEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCCCCCCCCc----cccccChhHHHHHHHHHHHHHH
Q 010217 133 ECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEEN----CNFLKEVEDAQRIRRNVIESFE 208 (515)
Q Consensus 133 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ipG~~~~----~~~~~~~~~a~~~~~~~~~~~~ 208 (515)
+|+.+++.++.+.+.... + ..+.||+||+|||+.|+.|++||.... +......+
T Consensus 78 ~v~~v~~~~~~~~v~~~~-----~---~~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~-------------- 135 (300)
T TIGR01292 78 EVIKVDLSDRPFKVKTGD-----G---KEYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCD-------------- 135 (300)
T ss_pred EEEEEEecCCeeEEEeCC-----C---CEEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecC--------------
Confidence 899999887755554321 1 279999999999999998999986421 11111100
Q ss_pred hcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccccccHHHHHHHHHHh
Q 010217 209 KASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKF 288 (515)
Q Consensus 209 ~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l 288 (515)
....++++|+|||+|++|+|+|..|.+. +.+|+++++.+.+.. ...+.+.+
T Consensus 136 ---------~~~~~~~~v~ViG~G~~~~e~a~~l~~~--------------~~~V~~v~~~~~~~~------~~~~~~~l 186 (300)
T TIGR01292 136 ---------GPFFKNKEVAVVGGGDSAIEEALYLTRI--------------AKKVTLVHRRDKFRA------EKILLDRL 186 (300)
T ss_pred ---------hhhcCCCEEEEECCChHHHHHHHHHHhh--------------cCEEEEEEeCcccCc------CHHHHHHH
Confidence 0112567999999999999999999875 579999999876531 23455666
Q ss_pred hcC-CeEEEcCcEEEEEeCCe----EEEEecCCCceEEEecCeEEEccCCCCccchHHHHHHh-CCCCCCceeeCCCccc
Q 010217 289 SRD-GIDVKLGSMVVKVTDKE----IFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQV-GQTNRRALATDEWLRV 362 (515)
Q Consensus 289 ~~~-gV~v~~~~~v~~i~~~~----v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~-~~~~~g~i~vd~~l~t 362 (515)
++. ||++++++.+++++.++ +.+....+|+..++++|++|||+| ..|+. .+++.+ .++.+|++.||++++|
T Consensus 187 ~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G--~~~~~-~~l~~~~~~~~~g~i~v~~~~~t 263 (300)
T TIGR01292 187 RKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIG--HEPNT-ELLKGLLELDEGGYIVTDEGMRT 263 (300)
T ss_pred HhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeC--CCCCh-HHHHHhheecCCCcEEECCCCcc
Confidence 776 99999999999998653 333333346555799999999999 46766 555554 3367799999999998
Q ss_pred cCCCCEEEeccccccCccchHHHHHHHHHhh
Q 010217 363 EGSDSIYALGDCATVNQRRVMEDIAAIFSKA 393 (515)
Q Consensus 363 ~~~~~IyA~GD~~~~~~~~~~~~~~~~~~~a 393 (515)
++|+||++|||+......+..++.++..++
T Consensus 264 -~~~~vya~GD~~~~~~~~~~~A~~~g~~aa 293 (300)
T TIGR01292 264 -SVPGVFAAGDVRDKGYRQAVTAAGDGCIAA 293 (300)
T ss_pred -CCCCEEEeecccCcchhhhhhhhhhHHHHH
Confidence 999999999999854444555666655444
No 31
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=3e-33 Score=278.07 Aligned_cols=286 Identities=17% Similarity=0.153 Sum_probs=200.9
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCC----ccchhcc--CcccccccccchHHHHhhcCceEEE
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP----LLPSVTC--GTVEARSIVEPVRNIVRKKNVDICF 129 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~----~~~~~~~--g~~~~~~~~~~~~~~~~~~~i~v~~ 129 (515)
...++|+|||||||||+||.+|++.|+++++||.. ..++.. ..+.++. .......+...+.+....+++++
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 80 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEI-- 80 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEE--
Confidence 45789999999999999999999999999999854 334321 1111111 01122234555666777777654
Q ss_pred EEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCCCCCCCCccccccChhHHHHHHHHHHHHHHh
Q 010217 130 WEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEK 209 (515)
Q Consensus 130 ~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~ 209 (515)
...+|..|+..++.+.+.... + .+.||+||||||+.|+.|++||.+.. ..+.+......
T Consensus 81 ~~~~v~~v~~~~~~~~v~~~~------~---~~~~d~vilAtG~~~~~~~i~g~~~~--~~~~v~~~~~~---------- 139 (321)
T PRK10262 81 IFDHINKVDLQNRPFRLTGDS------G---EYTCDALIIATGASARYLGLPSEEAF--KGRGVSACATC---------- 139 (321)
T ss_pred EeeEEEEEEecCCeEEEEecC------C---EEEECEEEECCCCCCCCCCCCCHHHc--CCCcEEEeecC----------
Confidence 345677888877776665311 1 68999999999999999999996421 11111000000
Q ss_pred cCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccccccHHHHHHHHHHhh
Q 010217 210 ASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFS 289 (515)
Q Consensus 210 ~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~ 289 (515)
+.....+++|+|||+|++|+|+|..|.++ +.+|+++++.+.+. .++.+.+.+++.|+
T Consensus 140 -------~~~~~~g~~vvVvGgG~~g~e~A~~l~~~--------------~~~Vtlv~~~~~~~--~~~~~~~~~~~~l~ 196 (321)
T PRK10262 140 -------DGFFYRNQKVAVIGGGNTAVEEALYLSNI--------------ASEVHLIHRRDGFR--AEKILIKRLMDKVE 196 (321)
T ss_pred -------CHHHcCCCEEEEECCCHHHHHHHHHHHhh--------------CCEEEEEEECCccC--CCHHHHHHHHhhcc
Confidence 00112567999999999999999999986 57999999987652 34667788889999
Q ss_pred cCCeEEEcCcEEEEEeCCe-----EEEEecC-CCceEEEecCeEEEccCCCCccchHHHHHHhCC-CCCCceeeCC----
Q 010217 290 RDGIDVKLGSMVVKVTDKE-----IFTKVRG-NGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ-TNRRALATDE---- 358 (515)
Q Consensus 290 ~~gV~v~~~~~v~~i~~~~-----v~~~~~~-~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~~~-~~~g~i~vd~---- 358 (515)
+.||++++++.++++.++. +++.... +++..++++|.|||++| ..|+. .++.. ++ ..+|+|.||+
T Consensus 197 ~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G--~~p~~-~l~~~-~l~~~~g~i~vd~~~~~ 272 (321)
T PRK10262 197 NGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG--HSPNT-AIFEG-QLELENGYIKVQSGIHG 272 (321)
T ss_pred CCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeC--CccCh-hHhhc-cccccCCEEEECCCCcc
Confidence 9999999999999998652 3443321 23344699999999999 57777 45442 34 3568899997
Q ss_pred -CccccCCCCEEEeccccccCccchHHHHHHHHHhh
Q 010217 359 -WLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKA 393 (515)
Q Consensus 359 -~l~t~~~~~IyA~GD~~~~~~~~~~~~~~~~~~~a 393 (515)
+++| ++|+|||+|||+..+..++..++.++..++
T Consensus 273 ~~~~t-~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa 307 (321)
T PRK10262 273 NATQT-SIPGVFAAGDVMDHIYRQAITSAGTGCMAA 307 (321)
T ss_pred ccccc-CCCCEEECeeccCCCcceEEEEehhHHHHH
Confidence 6787 999999999999866666666666655444
No 32
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=7.5e-33 Score=288.02 Aligned_cols=269 Identities=22% Similarity=0.316 Sum_probs=199.0
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCc--------------------c---------c
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGT--------------------V---------E 108 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~--------------------~---------~ 108 (515)
+++|+|||+|+||+.||..+++.|.+|+|||++. ++++++...+.+.. . +
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 79 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVD 79 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccC
Confidence 3689999999999999999999999999999874 67765443332211 0 0
Q ss_pred cccc-----------ccchHHHHhhcCceEEEEEeEEEEEe--cCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCc
Q 010217 109 ARSI-----------VEPVRNIVRKKNVDICFWEAECFKID--AENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA 175 (515)
Q Consensus 109 ~~~~-----------~~~~~~~~~~~~i~v~~~~~~v~~id--~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~ 175 (515)
...+ ...+...+++++++ ++.+++..++ .+.+.+.+... +++..++.||+||||||++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~gV~--~~~g~~~~~~~~~~~~~v~V~~~------~g~~~~~~~d~lViATGs~p 151 (466)
T PRK07845 80 LPAVNARVKALAAAQSADIRARLEREGVR--VIAGRGRLIDPGLGPHRVKVTTA------DGGEETLDADVVLIATGASP 151 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCE--EEEEEEEEeecccCCCEEEEEeC------CCceEEEecCEEEEcCCCCC
Confidence 0000 11234556667766 6678887754 34556665432 12224689999999999999
Q ss_pred CCCCCCCCC-CccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhC
Q 010217 176 NTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLY 254 (515)
Q Consensus 176 ~~~~ipG~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~ 254 (515)
+.|++++.. +.++...+ ...+ . ..+++++|||+|++|+|+|..|+++
T Consensus 152 ~~~p~~~~~~~~v~~~~~---~~~~-------------~-------~~~~~vvVIGgG~ig~E~A~~l~~~--------- 199 (466)
T PRK07845 152 RILPTAEPDGERILTWRQ---LYDL-------------D-------ELPEHLIVVGSGVTGAEFASAYTEL--------- 199 (466)
T ss_pred CCCCCCCCCCceEEeehh---hhcc-------------c-------ccCCeEEEECCCHHHHHHHHHHHHc---------
Confidence 877665432 22332211 1110 0 1235999999999999999999886
Q ss_pred cccCCCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEe--CCeEEEEecCCCceEEEecCeEEEccC
Q 010217 255 PKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTG 332 (515)
Q Consensus 255 p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~~~v~~~~~~~G~~~~i~~D~vi~a~G 332 (515)
+.+|+++++.+++++.+++++.+.+.+.|++.||++++++.+.+++ ++++.+.. .+|+ ++++|.|++++|
T Consensus 200 -----g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~-~~g~--~l~~D~vl~a~G 271 (466)
T PRK07845 200 -----GVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTL-TDGR--TVEGSHALMAVG 271 (466)
T ss_pred -----CCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEE-CCCc--EEEecEEEEeec
Confidence 6899999999999999999999999999999999999999999996 34555443 4566 499999999999
Q ss_pred CCCccchHHH-HHHhCC--CCCCceeeCCCccccCCCCEEEeccccccC
Q 010217 333 IAPHAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVN 378 (515)
Q Consensus 333 ~~~~p~~~~l-~~~~~~--~~~g~i~vd~~l~t~~~~~IyA~GD~~~~~ 378 (515)
..|++..+ ++++++ +.+|+|.||+++|| +.|+|||+|||+..+
T Consensus 272 --~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~~ 317 (466)
T PRK07845 272 --SVPNTAGLGLEEAGVELTPSGHITVDRVSRT-SVPGIYAAGDCTGVL 317 (466)
T ss_pred --CCcCCCCCCchhhCceECCCCcEeECCCccc-CCCCEEEEeeccCCc
Confidence 57877433 567776 67789999999998 999999999999864
No 33
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=100.00 E-value=2.4e-33 Score=273.96 Aligned_cols=275 Identities=23% Similarity=0.414 Sum_probs=230.0
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCC--eEEEEcCCCCCccCC-ccchhccCcccccccccchHHHHhhcCceEEEEEe
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSY--DVQVISPRNYFAFTP-LLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEA 132 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~--~V~vie~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~ 132 (515)
...+.++|||+|++|..|+.+++..+. +++++-++.++.+-+ .++....- ....+.....+++++++|++ +.++
T Consensus 72 ~~ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~--~~~~~a~r~~e~Yke~gIe~-~~~t 148 (478)
T KOG1336|consen 72 YAARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLT--VGEGLAKRTPEFYKEKGIEL-ILGT 148 (478)
T ss_pred cccceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceee--ccccccccChhhHhhcCceE-EEcc
Confidence 446899999999999999999997664 588888777766643 33322111 11244445567899999998 5689
Q ss_pred EEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCCCCCCC-CccccccChhHHHHHHHHHHHHHHhcC
Q 010217 133 ECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKAS 211 (515)
Q Consensus 133 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ipG~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~ 211 (515)
.|+.+|...+++.+.++. .+.|++|+||||+.++.+++||.+ +++.++++++++..+...+.
T Consensus 149 ~v~~~D~~~K~l~~~~Ge----------~~kys~LilATGs~~~~l~~pG~~~~nv~~ireieda~~l~~~~~------- 211 (478)
T KOG1336|consen 149 SVVKADLASKTLVLGNGE----------TLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAAIQ------- 211 (478)
T ss_pred eeEEeeccccEEEeCCCc----------eeecceEEEeecCccccCCCCCccccceeeeccHHHHHHHHHHhc-------
Confidence 999999999999998765 899999999999999999999987 78899999999988876653
Q ss_pred CCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccccc-ccHHHHHHHHHHhhc
Q 010217 212 LPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM-FDKRITAFAEEKFSR 290 (515)
Q Consensus 212 ~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~-~~~~~~~~~~~~l~~ 290 (515)
...+|+|+|+|.+|+|+|..|... +.+||+|++.+.+++. +.+.+.+.+++++++
T Consensus 212 ----------~~~~vV~vG~G~ig~Evaa~l~~~--------------~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~ 267 (478)
T KOG1336|consen 212 ----------LGGKVVCVGGGFIGMEVAAALVSK--------------AKSVTVVFPEPWLLPRLFGPSIGQFYEDYYEN 267 (478)
T ss_pred ----------cCceEEEECchHHHHHHHHHHHhc--------------CceEEEEccCccchhhhhhHHHHHHHHHHHHh
Confidence 456899999999999999999874 6899999999999985 789999999999999
Q ss_pred CCeEEEcCcEEEEEeCC---eEEEEecCCCceEEEecCeEEEccCCCCccchHHHHHH-hCCCCCCceeeCCCccccCCC
Q 010217 291 DGIDVKLGSMVVKVTDK---EIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQ-VGQTNRRALATDEWLRVEGSD 366 (515)
Q Consensus 291 ~gV~v~~~~~v~~i~~~---~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~-~~~~~~g~i~vd~~l~t~~~~ 366 (515)
+||++++++.+.+++.+ ++.-+.+.+|+. ++||+||+.+| ..|++ .+++. ..++.+|+|.||+++|| ++|
T Consensus 268 kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~--l~adlvv~GiG--~~p~t-~~~~~g~~~~~~G~i~V~~~f~t-~~~ 341 (478)
T KOG1336|consen 268 KGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKT--LEADLVVVGIG--IKPNT-SFLEKGILLDSKGGIKVDEFFQT-SVP 341 (478)
T ss_pred cCeEEEEecceeecccCCCCcEEEEEeccCCE--eccCeEEEeec--ccccc-ccccccceecccCCEeehhceee-ccC
Confidence 99999999999999753 566677788885 99999999999 68988 55553 33388999999999999 899
Q ss_pred CEEEeccccccCcc
Q 010217 367 SIYALGDCATVNQR 380 (515)
Q Consensus 367 ~IyA~GD~~~~~~~ 380 (515)
||||+|||++.+..
T Consensus 342 ~VyAiGDva~fp~~ 355 (478)
T KOG1336|consen 342 NVYAIGDVATFPLK 355 (478)
T ss_pred Ccccccceeecccc
Confidence 99999999997653
No 34
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=3.4e-33 Score=290.73 Aligned_cols=268 Identities=19% Similarity=0.238 Sum_probs=195.4
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCC--------CCccCCccchhccC--------------------cc--
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN--------YFAFTPLLPSVTCG--------------------TV-- 107 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~--------~~~~~~~~~~~~~g--------------------~~-- 107 (515)
.+||||||+||||+.||..+++.|.+|+|||+.. .+|++++..++.+. ..
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 4799999999999999999999999999999631 35665433222111 10
Q ss_pred -----cccc-----------cccchHHHHhhcCceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEcc
Q 010217 108 -----EARS-----------IVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAM 171 (515)
Q Consensus 108 -----~~~~-----------~~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAt 171 (515)
+... +...+...++..+++ ++++.+..++++ +|.+.... ++...+.||+|||||
T Consensus 82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~--~i~G~a~f~~~~--~v~v~~~~------g~~~~~~~d~lVIAT 151 (484)
T TIGR01438 82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVN--YENAYAEFVDKH--RIKATNKK------GKEKIYSAERFLIAT 151 (484)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcE--EEEEEEEEcCCC--EEEEeccC------CCceEEEeCEEEEec
Confidence 0000 011223345666755 678889888865 56654321 123479999999999
Q ss_pred CCCcCCCCCCCCCCccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHH
Q 010217 172 GARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLF 251 (515)
Q Consensus 172 G~~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~ 251 (515)
|++|+.|++||..+..+ +.++... ++. .+++++|||||++|+|+|..|.++
T Consensus 152 Gs~p~~p~ipG~~~~~~---~~~~~~~-------------~~~-------~~~~vvIIGgG~iG~E~A~~l~~~------ 202 (484)
T TIGR01438 152 GERPRYPGIPGAKELCI---TSDDLFS-------------LPY-------CPGKTLVVGASYVALECAGFLAGI------ 202 (484)
T ss_pred CCCCCCCCCCCccceee---cHHHhhc-------------ccc-------cCCCEEEECCCHHHHHHHHHHHHh------
Confidence 99999999999754322 2222111 111 235899999999999999999986
Q ss_pred hhCcccCCCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEeC--CeEEEEecCCCc-eEEEecCeEE
Q 010217 252 KLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGE-TSSMPYGMVV 328 (515)
Q Consensus 252 ~~~p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~v~~~~~~~G~-~~~i~~D~vi 328 (515)
+.+|+++++ +.+++.+|+++++.+++.|++.||++++++.+.+++. +.+.+.. .+|+ ..++++|.|+
T Consensus 203 --------G~~Vtli~~-~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~-~~~~~~~~i~~D~vl 272 (484)
T TIGR01438 203 --------GLDVTVMVR-SILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTF-TDSTNGIEEEYDTVL 272 (484)
T ss_pred --------CCcEEEEEe-cccccccCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEE-ecCCcceEEEeCEEE
Confidence 689999997 5788899999999999999999999999999888863 3333332 2332 2259999999
Q ss_pred EccCCCCccchHHH-HHHhCC--CC-CCceeeCCCccccCCCCEEEecccccc
Q 010217 329 WSTGIAPHAIIKDF-MKQVGQ--TN-RRALATDEWLRVEGSDSIYALGDCATV 377 (515)
Q Consensus 329 ~a~G~~~~p~~~~l-~~~~~~--~~-~g~i~vd~~l~t~~~~~IyA~GD~~~~ 377 (515)
||+| ..|++..+ ++.+++ +. +|+|.||+++|| +.|+|||+|||+..
T Consensus 273 ~a~G--~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~T-s~p~IyA~GDv~~~ 322 (484)
T TIGR01438 273 LAIG--RDACTRKLNLENVGVKINKKTGKIPADEEEQT-NVPYIYAVGDILED 322 (484)
T ss_pred EEec--CCcCCCcCCcccccceecCcCCeEecCCCccc-CCCCEEEEEEecCC
Confidence 9999 67888443 566776 33 488999999998 99999999999963
No 35
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=5e-33 Score=289.95 Aligned_cols=268 Identities=22% Similarity=0.335 Sum_probs=190.6
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccc-------------------cccccc---
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEA-------------------RSIVEP--- 115 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~-------------------~~~~~~--- 115 (515)
.+||+||||||||++||.+|++.|.+|+|||++ .+|++++..++.+..... ......
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~ 82 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFDYGA 82 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccCHHH
Confidence 489999999999999999999999999999985 556654433322211000 000000
Q ss_pred ---------------hHHHHhhcCceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCCC
Q 010217 116 ---------------VRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNT 180 (515)
Q Consensus 116 ---------------~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i 180 (515)
....++..+++ .+.++...++. +.+.+... +++..++.||+||||||++|+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~v~--~i~g~~~~~~~--~~v~v~~~------~g~~~~~~~d~lViATGs~p~~~-- 150 (466)
T PRK07818 83 AFDRSRKVAEGRVKGVHFLMKKNKIT--EIHGYGTFTDA--NTLEVDLN------DGGTETVTFDNAIIATGSSTRLL-- 150 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEEEcCC--CEEEEEec------CCCeeEEEcCEEEEeCCCCCCCC--
Confidence 01112223443 45666665653 45555432 12234799999999999999764
Q ss_pred CCCC--CccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccC
Q 010217 181 PGVE--ENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVK 258 (515)
Q Consensus 181 pG~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~ 258 (515)
||.+ ..++ +.++. +. .. ..+++++|||+|++|+|+|..++++
T Consensus 151 pg~~~~~~v~---~~~~~------~~-------~~-------~~~~~vvVIGgG~ig~E~A~~l~~~------------- 194 (466)
T PRK07818 151 PGTSLSENVV---TYEEQ------IL-------SR-------ELPKSIVIAGAGAIGMEFAYVLKNY------------- 194 (466)
T ss_pred CCCCCCCcEE---chHHH------hc-------cc-------cCCCeEEEECCcHHHHHHHHHHHHc-------------
Confidence 5543 2222 22111 00 00 1346999999999999999999886
Q ss_pred CCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEeCC--eEEEEec-CCCceEEEecCeEEEccCCCC
Q 010217 259 DSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK--EIFTKVR-GNGETSSMPYGMVVWSTGIAP 335 (515)
Q Consensus 259 ~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~v~~~~~-~~G~~~~i~~D~vi~a~G~~~ 335 (515)
+.+|+++++.+++++.+++++.+.+++.|++.||+++++++|++++++ .+.+... .+|+..++++|.||||+| .
T Consensus 195 -G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G--~ 271 (466)
T PRK07818 195 -GVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIG--F 271 (466)
T ss_pred -CCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcC--c
Confidence 689999999999999999999999999999999999999999999753 2333221 356544699999999999 6
Q ss_pred ccchHHH-HHHhCC--CCCCceeeCCCccccCCCCEEEeccccccC
Q 010217 336 HAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVN 378 (515)
Q Consensus 336 ~p~~~~l-~~~~~~--~~~g~i~vd~~l~t~~~~~IyA~GD~~~~~ 378 (515)
.|++..+ ++..++ +.+|+|.||+++|| +.|+|||+|||+..+
T Consensus 272 ~pn~~~l~l~~~g~~~~~~g~i~vd~~~~T-s~p~IyAiGD~~~~~ 316 (466)
T PRK07818 272 APRVEGYGLEKTGVALTDRGAIAIDDYMRT-NVPHIYAIGDVTAKL 316 (466)
T ss_pred ccCCCCCCchhcCcEECCCCcEeeCCCccc-CCCCEEEEeecCCCc
Confidence 7887543 567776 57789999999998 999999999999753
No 36
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=5.7e-33 Score=288.90 Aligned_cols=271 Identities=20% Similarity=0.306 Sum_probs=191.7
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCccc---------------------------cc
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVE---------------------------AR 110 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~---------------------------~~ 110 (515)
.+||+||||||||++||..+++.|++|+|||++..+|++++..++.+.... ..
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~ 82 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLA 82 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHH
Confidence 479999999999999999999999999999987778887644332221100 00
Q ss_pred ccc-----------cchHHHHhhcCceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCC
Q 010217 111 SIV-----------EPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (515)
Q Consensus 111 ~~~-----------~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ 179 (515)
.+. ..+..++++.+++ ++.+++...+. +.+.+... +++..++.||+||||||++|. +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g~a~~~~~--~~v~v~~~------~g~~~~~~~d~lVIATGs~p~--~ 150 (466)
T PRK06115 83 QMMKQKDESVEALTKGVEFLFRKNKVD--WIKGWGRLDGV--GKVVVKAE------DGSETQLEAKDIVIATGSEPT--P 150 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEEEccC--CEEEEEcC------CCceEEEEeCEEEEeCCCCCC--C
Confidence 000 0112233445554 56666644432 34444321 222347999999999999885 4
Q ss_pred CCCCC-CccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccC
Q 010217 180 TPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVK 258 (515)
Q Consensus 180 ipG~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~ 258 (515)
+||+. ++...+ +.+++.. ++ ..+++++|||+|++|+|+|..+.++
T Consensus 151 ipg~~~~~~~~~-~~~~~~~-------------~~-------~~~~~vvIIGgG~ig~E~A~~l~~~------------- 196 (466)
T PRK06115 151 LPGVTIDNQRII-DSTGALS-------------LP-------EVPKHLVVIGAGVIGLELGSVWRRL------------- 196 (466)
T ss_pred CCCCCCCCCeEE-CHHHHhC-------------Cc-------cCCCeEEEECCCHHHHHHHHHHHHc-------------
Confidence 67753 222222 2111111 11 1346999999999999999999876
Q ss_pred CCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEeC--CeEEEE--ecCCCceEEEecCeEEEccCCC
Q 010217 259 DSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTK--VRGNGETSSMPYGMVVWSTGIA 334 (515)
Q Consensus 259 ~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~v~~~--~~~~G~~~~i~~D~vi~a~G~~ 334 (515)
+.+|+++++.+++++.+++++.+.+++.|++.||++++++.++++++ +++.+. ...+|+..++++|.|++++|
T Consensus 197 -G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G-- 273 (466)
T PRK06115 197 -GAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIG-- 273 (466)
T ss_pred -CCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccC--
Confidence 68999999999999999999999999999999999999999999974 344332 22234444699999999999
Q ss_pred CccchHHH-HHHhCC--CCCCceeeCCCccccCCCCEEEeccccccCc
Q 010217 335 PHAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQ 379 (515)
Q Consensus 335 ~~p~~~~l-~~~~~~--~~~g~i~vd~~l~t~~~~~IyA~GD~~~~~~ 379 (515)
..|++..+ ++..++ +.+| +.||+++|| ++|+|||+|||+..++
T Consensus 274 ~~pn~~~l~~~~~g~~~~~~G-~~vd~~~~T-s~~~IyA~GD~~~~~~ 319 (466)
T PRK06115 274 RRPYTQGLGLETVGLETDKRG-MLANDHHRT-SVPGVWVIGDVTSGPM 319 (466)
T ss_pred CccccccCCcccccceeCCCC-EEECCCeec-CCCCEEEeeecCCCcc
Confidence 57888544 556666 3444 789999998 9999999999998654
No 37
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=8.2e-33 Score=295.48 Aligned_cols=268 Identities=20% Similarity=0.271 Sum_probs=195.6
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhcc---------------------Ccc------cc
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTC---------------------GTV------EA 109 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~---------------------g~~------~~ 109 (515)
..+||+||||||||++||..|++.|.+|+|||++ .+|++++..++.+ |.. ..
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 175 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR 175 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCH
Confidence 3589999999999999999999999999999987 6777653322111 110 00
Q ss_pred cccccc------------hHHHHhhc-CceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcC
Q 010217 110 RSIVEP------------VRNIVRKK-NVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARAN 176 (515)
Q Consensus 110 ~~~~~~------------~~~~~~~~-~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~ 176 (515)
..+... +..++.++ + +.++.+++..++.....|.+.+ ++...+.||+||||||++|+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~g~~~~~~~~~~~v~~~~--------g~~~~~~~d~lviAtGs~p~ 245 (561)
T PRK13748 176 SRLLAQQQARVDELRHAKYEGILDGNPA--ITVLHGEARFKDDQTLIVRLND--------GGERVVAFDRCLIATGASPA 245 (561)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHhccCC--eEEEEEEEEEecCCEEEEEeCC--------CceEEEEcCEEEEcCCCCCC
Confidence 111111 11223333 4 4577888988886544443322 22347999999999999999
Q ss_pred CCCCCCCCCccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcc
Q 010217 177 TFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPK 256 (515)
Q Consensus 177 ~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~ 256 (515)
.|++||.+... ++.+ .+... . . ..+++++|||+|++|+|+|..|.++
T Consensus 246 ~p~i~g~~~~~-~~~~-~~~~~----------~---~-------~~~~~vvViGgG~ig~E~A~~l~~~----------- 292 (561)
T PRK13748 246 VPPIPGLKETP-YWTS-TEALV----------S---D-------TIPERLAVIGSSVVALELAQAFARL----------- 292 (561)
T ss_pred CCCCCCCCccc-eEcc-HHHhh----------c---c-------cCCCeEEEECCCHHHHHHHHHHHHc-----------
Confidence 99999975422 1211 11110 0 0 1346999999999999999999986
Q ss_pred cCCCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEeC--CeEEEEecCCCceEEEecCeEEEccCCC
Q 010217 257 VKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIA 334 (515)
Q Consensus 257 ~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~~ 334 (515)
+.+|+++++. .+++.+++++.+.+++.|++.||++++++.+++++. +.+.+.. .++ ++++|.|+||+|
T Consensus 293 ---g~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~-~~~---~i~~D~vi~a~G-- 362 (561)
T PRK13748 293 ---GSKVTILARS-TLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTT-GHG---ELRADKLLVATG-- 362 (561)
T ss_pred ---CCEEEEEecC-ccccccCHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEe-cCC---eEEeCEEEEccC--
Confidence 6899999984 577778999999999999999999999999999964 3343332 333 399999999999
Q ss_pred CccchHHH-HHHhCC--CCCCceeeCCCccccCCCCEEEeccccccCc
Q 010217 335 PHAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQ 379 (515)
Q Consensus 335 ~~p~~~~l-~~~~~~--~~~g~i~vd~~l~t~~~~~IyA~GD~~~~~~ 379 (515)
..|++..+ ++..++ +.+|+|.||+++|| ++|||||+|||+..+.
T Consensus 363 ~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~T-s~~~IyA~GD~~~~~~ 409 (561)
T PRK13748 363 RAPNTRSLALDAAGVTVNAQGAIVIDQGMRT-SVPHIYAAGDCTDQPQ 409 (561)
T ss_pred CCcCCCCcCchhcCceECCCCCEeECCCccc-CCCCEEEeeecCCCcc
Confidence 57887443 567776 67889999999998 9999999999998654
No 38
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=2.1e-32 Score=285.68 Aligned_cols=271 Identities=18% Similarity=0.244 Sum_probs=196.6
Q ss_pred CCCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhcc--------------------Ccc--c----
Q 010217 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTC--------------------GTV--E---- 108 (515)
Q Consensus 55 ~~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~--------------------g~~--~---- 108 (515)
...++||+|||+|+||+++|..|++.|.+|+|||+.+.+|++++..++.+ |.. .
T Consensus 13 ~~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 92 (479)
T PRK14727 13 SKLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSID 92 (479)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccC
Confidence 34578999999999999999999999999999999877777654332211 110 0
Q ss_pred ccccc-------cc-----hHHHHhhc-CceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCc
Q 010217 109 ARSIV-------EP-----VRNIVRKK-NVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA 175 (515)
Q Consensus 109 ~~~~~-------~~-----~~~~~~~~-~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~ 175 (515)
...+. .. +...++.. + +.++.+++..++.. .+.+... +++..++.||+||||||++|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~i~G~a~f~~~~--~v~v~~~------~g~~~~~~~d~lViATGs~p 162 (479)
T PRK14727 93 RGLLLHQQQARVEELRHAKYQSILDGNPA--LTLLKGYARFKDGN--TLVVRLH------DGGERVLAADRCLIATGSTP 162 (479)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhhcCC--eEEEEEEEEEecCC--EEEEEeC------CCceEEEEeCEEEEecCCCC
Confidence 00000 00 11222222 4 44677888777754 4544421 22234799999999999999
Q ss_pred CCCCCCCCCCccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCc
Q 010217 176 NTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYP 255 (515)
Q Consensus 176 ~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p 255 (515)
..|++||.++..+ +.+ .+... . . ..+++++|||+|++|+|+|..+.++
T Consensus 163 ~~p~i~G~~~~~~-~~~-~~~l~----------~---~-------~~~k~vvVIGgG~iG~E~A~~l~~~---------- 210 (479)
T PRK14727 163 TIPPIPGLMDTPY-WTS-TEALF----------S---D-------ELPASLTVIGSSVVAAEIAQAYARL---------- 210 (479)
T ss_pred CCCCCCCcCccce-ecc-hHHhc----------c---c-------cCCCeEEEECCCHHHHHHHHHHHHc----------
Confidence 9999999753211 111 11110 0 0 1346999999999999999999886
Q ss_pred ccCCCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEeC--CeEEEEecCCCceEEEecCeEEEccCC
Q 010217 256 KVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 256 ~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
+.+|+++++. .+++.+++++.+.+++.|++.||++++++++++++. +.+.+.. .++ ++++|.||+|+|
T Consensus 211 ----G~~Vtlv~~~-~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~-~~g---~i~aD~VlvA~G- 280 (479)
T PRK14727 211 ----GSRVTILARS-TLLFREDPLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTT-GHG---ELRAEKLLISTG- 280 (479)
T ss_pred ----CCEEEEEEcC-CCCCcchHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEE-cCC---eEEeCEEEEccC-
Confidence 6899999874 678888999999999999999999999999999863 3444432 334 389999999999
Q ss_pred CCccchHHH-HHHhCC--CCCCceeeCCCccccCCCCEEEeccccccCc
Q 010217 334 APHAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQ 379 (515)
Q Consensus 334 ~~~p~~~~l-~~~~~~--~~~g~i~vd~~l~t~~~~~IyA~GD~~~~~~ 379 (515)
..|++..+ ++.+++ +.+|+|.||+++|| ++|+|||+|||+..+.
T Consensus 281 -~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~~~ 327 (479)
T PRK14727 281 -RHANTHDLNLEAVGVTTDTSGAIVVNPAMET-SAPDIYAAGDCSDLPQ 327 (479)
T ss_pred -CCCCccCCCchhhCceecCCCCEEECCCeec-CCCCEEEeeecCCcch
Confidence 57877444 566676 57789999999998 9999999999998654
No 39
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-32 Score=265.54 Aligned_cols=277 Identities=21% Similarity=0.277 Sum_probs=208.7
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCe-EEEEcCCCCCccCCc----cchhc--cCcccccccccchHHHHhhcCceEEE
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYD-VQVISPRNYFAFTPL----LPSVT--CGTVEARSIVEPVRNIVRKKNVDICF 129 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~-V~vie~~~~~~~~~~----~~~~~--~g~~~~~~~~~~~~~~~~~~~i~v~~ 129 (515)
+.+||+|||||||||+||.++++.+.+ ++|+|.. ..++.+. ...++ .+.....++.+.++++....+++ +
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~-~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~--~ 78 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGG-EPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVE--I 78 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecC-CcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeE--E
Confidence 368999999999999999999999999 5555543 3333321 11111 11123346677777888888865 4
Q ss_pred EEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCCCCCCCC----ccccccChhHHHHHHHHHHH
Q 010217 130 WEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEE----NCNFLKEVEDAQRIRRNVIE 205 (515)
Q Consensus 130 ~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ipG~~~----~~~~~~~~~~a~~~~~~~~~ 205 (515)
....|..++.....+.+.... + ++.+++||||||+.++.|.+||..+ +++++.. .|
T Consensus 79 ~~~~v~~v~~~~~~F~v~t~~------~---~~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~-cd---------- 138 (305)
T COG0492 79 VEDEVEKVELEGGPFKVKTDK------G---TYEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCAT-CD---------- 138 (305)
T ss_pred EEEEEEEEeecCceEEEEECC------C---eEEEeEEEECcCCcccCCCCCcchhhcCCceEEeee-cC----------
Confidence 568888888776455554432 1 5999999999999999999887542 2222211 22
Q ss_pred HHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccccccHHHHHHHH
Q 010217 206 SFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAE 285 (515)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~ 285 (515)
. ..++++|+|||||++++|.|.+|..+ +.+||+++|++.+-. .+.+.
T Consensus 139 ------------g-~~~~k~v~ViGgG~sAve~Al~L~~~--------------a~~Vtlv~r~~~~ra------~~~~~ 185 (305)
T COG0492 139 ------------G-FFKGKDVVVIGGGDSAVEEALYLSKI--------------AKKVTLVHRRDEFRA------EEILV 185 (305)
T ss_pred ------------c-cccCCeEEEEcCCHHHHHHHHHHHHh--------------cCeEEEEecCcccCc------CHHHH
Confidence 1 24678999999999999999999998 468999999987643 33444
Q ss_pred HHhhcC-CeEEEcCcEEEEEeCC---eEEEEecCCCceEEEecCeEEEccCCCCccchHHHHHHhCC-CCCCceeeCCCc
Q 010217 286 EKFSRD-GIDVKLGSMVVKVTDK---EIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ-TNRRALATDEWL 360 (515)
Q Consensus 286 ~~l~~~-gV~v~~~~~v~~i~~~---~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~~~-~~~g~i~vd~~l 360 (515)
+.+++. +|++++++.++++.++ ++++.+.. |+..++++|-+++++| ..|++ .|+...++ +++|+|.||+.+
T Consensus 186 ~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~-~~~~~~~~~gvf~~iG--~~p~~-~~~~~~~~~~~~g~I~v~~~~ 261 (305)
T COG0492 186 ERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVK-GEEKELPVDGVFIAIG--HLPNT-ELLKGLGVLDENGYIVVDEEM 261 (305)
T ss_pred HHHHhcCCeEEEeCCceeEEecCccceEEEEecC-CceEEEEeceEEEecC--CCCch-HHHhhccccCCCCcEEcCCCc
Confidence 555555 8999999999999884 56666533 6677899999999999 68888 77777766 889999999999
Q ss_pred cccCCCCEEEeccccccCccchHHHHHHHHHhhc
Q 010217 361 RVEGSDSIYALGDCATVNQRRVMEDIAAIFSKAD 394 (515)
Q Consensus 361 ~t~~~~~IyA~GD~~~~~~~~~~~~~~~~~~~a~ 394 (515)
+| |+|+|||+|||+..+.++++.++.++..++.
T Consensus 262 ~T-svpGifAaGDv~~~~~rqi~ta~~~G~~Aa~ 294 (305)
T COG0492 262 ET-SVPGIFAAGDVADKNGRQIATAAGDGAIAAL 294 (305)
T ss_pred cc-CCCCEEEeEeeccCcccEEeehhhhHHHHHH
Confidence 98 9999999999999988888888888776654
No 40
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=8.3e-33 Score=290.77 Aligned_cols=280 Identities=18% Similarity=0.275 Sum_probs=200.3
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCcc----chhcc-CcccccccccchHHHHhhcCceEEEE
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLL----PSVTC-GTVEARSIVEPVRNIVRKKNVDICFW 130 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~----~~~~~-g~~~~~~~~~~~~~~~~~~~i~v~~~ 130 (515)
...+||+||||||||++||.+|++.|++|+||++. +|+++.. ..+.. ......++...+.+.++++++++. .
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~-~ 286 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLM-E 286 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEE-c
Confidence 44689999999999999999999999999999853 5554321 11110 011223456667778888888863 4
Q ss_pred EeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCCCCCCCCc----cccccChhHHHHHHHHHHHH
Q 010217 131 EAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEEN----CNFLKEVEDAQRIRRNVIES 206 (515)
Q Consensus 131 ~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ipG~~~~----~~~~~~~~~a~~~~~~~~~~ 206 (515)
+.+|+.++...+.+.+.... + ..+.||+||+|||+.|+.+++||..+. ++.+...+
T Consensus 287 ~~~V~~I~~~~~~~~v~~~~-----g---~~i~~d~lIlAtGa~~~~~~ipG~~~~~~~~v~~~~~~~------------ 346 (515)
T TIGR03140 287 NQRAKKIETEDGLIVVTLES-----G---EVLKAKSVIVATGARWRKLGVPGEKEYIGKGVAYCPHCD------------ 346 (515)
T ss_pred CCEEEEEEecCCeEEEEECC-----C---CEEEeCEEEECCCCCcCCCCCCCHHHcCCCeEEEeeccC------------
Confidence 67899898766544443211 1 179999999999999999999996421 11111100
Q ss_pred HHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccccccHHHHHHHHH
Q 010217 207 FEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEE 286 (515)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~ 286 (515)
.....+++|+|||||++|+|+|..|+.+ +.+|+++++.+.+.. ...+.+
T Consensus 347 -----------~~~~~~k~VvViGgG~~g~E~A~~L~~~--------------g~~Vtli~~~~~l~~------~~~l~~ 395 (515)
T TIGR03140 347 -----------GPFFKGKDVAVIGGGNSGIEAAIDLAGI--------------VRHVTVLEFADELKA------DKVLQD 395 (515)
T ss_pred -----------hhhcCCCEEEEECCcHHHHHHHHHHHhc--------------CcEEEEEEeCCcCCh------hHHHHH
Confidence 0012567999999999999999999876 579999998876632 234566
Q ss_pred Hhhc-CCeEEEcCcEEEEEeCC--e---EEEEecCCCceEEEecCeEEEccCCCCccchHHHHHHh-CCCCCCceeeCCC
Q 010217 287 KFSR-DGIDVKLGSMVVKVTDK--E---IFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQV-GQTNRRALATDEW 359 (515)
Q Consensus 287 ~l~~-~gV~v~~~~~v~~i~~~--~---v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~-~~~~~g~i~vd~~ 359 (515)
.+++ .||++++++.++++.++ . +.+.+..+|+..+++||.|++++| ..|++ .+++.. .++.+|+|.||++
T Consensus 396 ~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G--~~Pn~-~~l~~~~~~~~~G~I~vd~~ 472 (515)
T TIGR03140 396 KLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIG--LVPNT-EWLKDAVELNRRGEIVIDER 472 (515)
T ss_pred HHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeC--CcCCc-hHHhhhcccCCCCeEEECCC
Confidence 6765 69999999999999754 2 344433345545799999999999 67887 555544 2367799999999
Q ss_pred ccccCCCCEEEeccccccCccchHHHHHHHHHhh
Q 010217 360 LRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKA 393 (515)
Q Consensus 360 l~t~~~~~IyA~GD~~~~~~~~~~~~~~~~~~~a 393 (515)
+|| ++|+|||+|||+..+...+..++.++..++
T Consensus 473 ~~T-s~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa 505 (515)
T TIGR03140 473 GRT-SVPGIFAAGDVTTVPYKQIIIAMGEGAKAA 505 (515)
T ss_pred CCC-CCCCEEEcccccCCccceEEEEEccHHHHH
Confidence 998 999999999999876655555665555444
No 41
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.1e-32 Score=286.66 Aligned_cols=266 Identities=21% Similarity=0.313 Sum_probs=192.4
Q ss_pred eEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhcc--------------------Ccc--------cccc
Q 010217 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTC--------------------GTV--------EARS 111 (515)
Q Consensus 60 ~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~--------------------g~~--------~~~~ 111 (515)
+|+||||||||++||..|++.|.+|+|||+.. ++++++..++.+ |.. +...
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~-~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 80 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD-LGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQ 80 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHH
Confidence 89999999999999999999999999999874 565543222111 110 1111
Q ss_pred ccc-----------chHHHHhhcCceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCCC
Q 010217 112 IVE-----------PVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNT 180 (515)
Q Consensus 112 ~~~-----------~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i 180 (515)
+.. ....++++.+++ ++++++..++.+ .+.+... ++ ..++.||+||||||++|+.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g~a~~~~~~--~v~v~~~------~~-~~~~~~d~lviATGs~p~~~p~ 149 (458)
T PRK06912 81 MQARKSQIVTQLVQGIQYLMKKNKIK--VIQGKASFETDH--RVRVEYG------DK-EEVVDAEQFIIAAGSEPTELPF 149 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcE--EEEEEEEEccCC--EEEEeeC------CC-cEEEECCEEEEeCCCCCCCCCC
Confidence 111 112234445655 678888888755 4444321 11 2379999999999999988888
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCC
Q 010217 181 PGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDS 260 (515)
Q Consensus 181 pG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~ 260 (515)
++.+.. . +.+..++.. +.. .+++++|||+|++|+|+|..+.++ +
T Consensus 150 ~~~~~~-~-v~~~~~~~~-------------~~~-------~~~~vvIIGgG~iG~E~A~~l~~~--------------g 193 (458)
T PRK06912 150 APFDGK-W-IINSKHAMS-------------LPS-------IPSSLLIVGGGVIGCEFASIYSRL--------------G 193 (458)
T ss_pred CCCCCC-e-EEcchHHhC-------------ccc-------cCCcEEEECCCHHHHHHHHHHHHc--------------C
Confidence 876422 1 112222211 111 235999999999999999998875 6
Q ss_pred cEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEeCCe--EEEEecCCCceEEEecCeEEEccCCCCccc
Q 010217 261 VKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDKE--IFTKVRGNGETSSMPYGMVVWSTGIAPHAI 338 (515)
Q Consensus 261 ~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~--v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~ 338 (515)
.+|+++++.+++++.+++++.+.+.+.|++.||++++++++++++.++ +.+. .+|+..+++||.|++|+| ..|+
T Consensus 194 ~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~--~~g~~~~i~~D~vivA~G--~~p~ 269 (458)
T PRK06912 194 TKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFE--YEGSIQEVNAEFVLVSVG--RKPR 269 (458)
T ss_pred CeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEE--ECCceEEEEeCEEEEecC--CccC
Confidence 899999999999999999999999999999999999999999997543 3333 245444699999999999 6788
Q ss_pred hHHH-HHHhCC-CCCCceeeCCCccccCCCCEEEeccccccC
Q 010217 339 IKDF-MKQVGQ-TNRRALATDEWLRVEGSDSIYALGDCATVN 378 (515)
Q Consensus 339 ~~~l-~~~~~~-~~~g~i~vd~~l~t~~~~~IyA~GD~~~~~ 378 (515)
+..+ ++..++ ..+++|.||+++|| +.|+|||+|||+..+
T Consensus 270 ~~~l~l~~~gv~~~~~gi~Vd~~~~t-s~~~VyA~GD~~~~~ 310 (458)
T PRK06912 270 VQQLNLEKAGVQFSNKGISVNEHMQT-NVPHIYACGDVIGGI 310 (458)
T ss_pred CCCCCchhcCceecCCCEEeCCCeec-CCCCEEEEeecCCCc
Confidence 7444 566666 22344999999998 899999999999753
No 42
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=3.3e-32 Score=284.15 Aligned_cols=279 Identities=21% Similarity=0.322 Sum_probs=200.4
Q ss_pred CeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccC-------------------cccc-------ccc
Q 010217 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCG-------------------TVEA-------RSI 112 (515)
Q Consensus 59 ~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g-------------------~~~~-------~~~ 112 (515)
+||+||||||||++||..|++.|.+|+|||+ +.+|+++....+.+. .+.. ..+
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWEKM 80 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHHHH
Confidence 7999999999999999999999999999999 677776432221111 0000 000
Q ss_pred cc-----------chHHHHhhcCceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCCCC
Q 010217 113 VE-----------PVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTP 181 (515)
Q Consensus 113 ~~-----------~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ip 181 (515)
.. .+..++++.+++ ++.+++..++.. .+.+.... + ..++.||+||||||++|+.|++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g~~~~~~~~--~~~v~~~~-----g--~~~~~~d~lVlAtG~~p~~~~~~ 149 (461)
T TIGR01350 81 QKRKNKVVKKLVGGVKGLLKKNKVT--VIKGEAKFLDPG--TVLVTGEN-----G--EETLTAKNIIIATGSRPRSLPGP 149 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEEEccCC--EEEEecCC-----C--cEEEEeCEEEEcCCCCCCCCCCC
Confidence 00 112234455655 567777777754 45444321 1 13799999999999999888876
Q ss_pred -CCCCccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCC
Q 010217 182 -GVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDS 260 (515)
Q Consensus 182 -G~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~ 260 (515)
+.... .+.+.+++..+ . ..+++++|||+|++|+|+|..|.++ +
T Consensus 150 ~~~~~~--~~~~~~~~~~~-------------~-------~~~~~vvViGgG~~g~e~A~~l~~~--------------g 193 (461)
T TIGR01350 150 FDFDGE--VVITSTGALNL-------------K-------EVPESLVIIGGGVIGIEFASIFASL--------------G 193 (461)
T ss_pred CCCCCc--eEEcchHHhcc-------------c-------cCCCeEEEECCCHHHHHHHHHHHHc--------------C
Confidence 43211 22333333221 0 1346999999999999999999875 6
Q ss_pred cEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEeC--CeEEEEecCCCceEEEecCeEEEccCCCCccc
Q 010217 261 VKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAI 338 (515)
Q Consensus 261 ~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~ 338 (515)
.+|+++++.+++++.+++++.+.+.+.+++.||++++++.+.+++. +.+.+.. .+|+..++++|.+|+|+| ..|+
T Consensus 194 ~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~-~~g~~~~i~~D~vi~a~G--~~p~ 270 (461)
T TIGR01350 194 SKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYEN-KGGETETLTGEKVLVAVG--RKPN 270 (461)
T ss_pred CcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEE-eCCcEEEEEeCEEEEecC--Cccc
Confidence 8999999999999999999999999999999999999999998863 4555443 456434599999999999 5777
Q ss_pred hHH-HHHHhCC--CCCCceeeCCCccccCCCCEEEeccccccCccchHHHHHHHH
Q 010217 339 IKD-FMKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIF 390 (515)
Q Consensus 339 ~~~-l~~~~~~--~~~g~i~vd~~l~t~~~~~IyA~GD~~~~~~~~~~~~~~~~~ 390 (515)
+.. +++.+++ +.+|+|.||+++|| +.|+|||+|||+..+. ....++.++.
T Consensus 271 ~~~l~~~~~gl~~~~~g~i~vd~~l~t-~~~~IyaiGD~~~~~~-~~~~A~~~g~ 323 (461)
T TIGR01350 271 TEGLGLENLGVELDERGRIVVDEYMRT-NVPGIYAIGDVIGGPM-LAHVASHEGI 323 (461)
T ss_pred CCCCCcHhhCceECCCCcEeeCCCccc-CCCCEEEeeecCCCcc-cHHHHHHHHH
Confidence 743 3677776 67789999999998 8999999999997543 2333443333
No 43
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=8.8e-32 Score=278.43 Aligned_cols=261 Identities=21% Similarity=0.295 Sum_probs=192.9
Q ss_pred CeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhcc--------------------Ccc------ccccc
Q 010217 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTC--------------------GTV------EARSI 112 (515)
Q Consensus 59 ~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~--------------------g~~------~~~~~ 112 (515)
+||+||||||||.+||..+ .|.+|+|||++ .+|++++..++.+ |.. +...+
T Consensus 2 yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 78 (451)
T PRK07846 2 YDLIIIGTGSGNSILDERF--ADKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDI 78 (451)
T ss_pred CCEEEECCCHHHHHHHHHH--CCCeEEEEeCC-CCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHH
Confidence 7999999999999999774 59999999975 5677654443321 110 00011
Q ss_pred cc-------ch-----HHH-HhhcCceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCC
Q 010217 113 VE-------PV-----RNI-VRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (515)
Q Consensus 113 ~~-------~~-----~~~-~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ 179 (515)
.. .+ ... ++..+++ ++.+++..++ .++|.+.++. .+.||+||||||++|+.|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g~a~~~~--~~~V~v~~g~----------~~~~d~lViATGs~p~~p~ 144 (451)
T PRK07846 79 VSRVFGRIDPIAAGGEEYRGRDTPNID--VYRGHARFIG--PKTLRTGDGE----------EITADQVVIAAGSRPVIPP 144 (451)
T ss_pred HHHHHHHHHHHhccchhhhhhhhCCcE--EEEEEEEEec--CCEEEECCCC----------EEEeCEEEEcCCCCCCCCC
Confidence 11 11 112 4445655 6677777775 5678775432 7999999999999999999
Q ss_pred CCCCCCccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCC
Q 010217 180 TPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKD 259 (515)
Q Consensus 180 ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~ 259 (515)
+||.+.. .+.+.+++..+. ..+++++|||+|++|+|+|..|.++
T Consensus 145 i~g~~~~--~~~~~~~~~~l~--------------------~~~~~vvIIGgG~iG~E~A~~l~~~-------------- 188 (451)
T PRK07846 145 VIADSGV--RYHTSDTIMRLP--------------------ELPESLVIVGGGFIAAEFAHVFSAL-------------- 188 (451)
T ss_pred CCCcCCc--cEEchHHHhhhh--------------------hcCCeEEEECCCHHHHHHHHHHHHc--------------
Confidence 9996421 233444433321 1246999999999999999999886
Q ss_pred CcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEeCC--eEEEEecCCCceEEEecCeEEEccCCCCcc
Q 010217 260 SVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK--EIFTKVRGNGETSSMPYGMVVWSTGIAPHA 337 (515)
Q Consensus 260 ~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p 337 (515)
+.+|+++++.+++++.+++++.+.+.+.+ +.||++++++++++++.+ ++.+.. .+|+ +++||.|++|+| ..|
T Consensus 189 G~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~~~~v~v~~-~~g~--~i~~D~vl~a~G--~~p 262 (451)
T PRK07846 189 GVRVTVVNRSGRLLRHLDDDISERFTELA-SKRWDVRLGRNVVGVSQDGSGVTLRL-DDGS--TVEADVLLVATG--RVP 262 (451)
T ss_pred CCeEEEEEcCCccccccCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEcCCEEEEEE-CCCc--EeecCEEEEEEC--Ccc
Confidence 68999999999999999999988887655 568999999999999743 444443 4566 499999999999 678
Q ss_pred chHHH-HHHhCC--CCCCceeeCCCccccCCCCEEEeccccccCc
Q 010217 338 IIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQ 379 (515)
Q Consensus 338 ~~~~l-~~~~~~--~~~g~i~vd~~l~t~~~~~IyA~GD~~~~~~ 379 (515)
++..+ ++.+++ +.+|+|.||+++|| +.|+|||+|||+..++
T Consensus 263 n~~~l~~~~~gl~~~~~G~i~Vd~~~~T-s~p~IyA~GD~~~~~~ 306 (451)
T PRK07846 263 NGDLLDAAAAGVDVDEDGRVVVDEYQRT-SAEGVFALGDVSSPYQ 306 (451)
T ss_pred CccccCchhcCceECCCCcEeECCCccc-CCCCEEEEeecCCCcc
Confidence 87433 466676 57899999999998 9999999999998643
No 44
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=100.00 E-value=9.4e-33 Score=281.40 Aligned_cols=378 Identities=23% Similarity=0.379 Sum_probs=284.6
Q ss_pred CCeEEEECCcHHHHHHHHhccC---CCCeEEEEcCCCCCccC-CccchhccCcccccccccchHHHHhhcCceEEEEEeE
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNN---PSYDVQVISPRNYFAFT-PLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAE 133 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~---~g~~V~vie~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~ 133 (515)
+.++||||.|+||..+...+.. .-++||++-.+++..|. .++..+..+....+++.-.-.+++.+.++++ +...+
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L-~~~~~ 81 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITL-YTGEK 81 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEE-EcCCe
Confidence 5799999999999999888774 66899999988888775 5777788887777777777789999999987 46889
Q ss_pred EEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCCCCCCC-CccccccChhHHHHHHHHHHHHHHhcCC
Q 010217 134 CFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASL 212 (515)
Q Consensus 134 v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ipG~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 212 (515)
|+.||++++.|+.+.+. .+.||+|||||||.|+.+|+||.+ ..++.+++++|...+...-
T Consensus 82 v~~idr~~k~V~t~~g~----------~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~a--------- 142 (793)
T COG1251 82 VIQIDRANKVVTTDAGR----------TVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCA--------- 142 (793)
T ss_pred eEEeccCcceEEccCCc----------EeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHH---------
Confidence 99999999999988755 899999999999999999999987 6789999999988765541
Q ss_pred CCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccccc-ccHHHHHHHHHHhhcC
Q 010217 213 PNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM-FDKRITAFAEEKFSRD 291 (515)
Q Consensus 213 ~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~-~~~~~~~~~~~~l~~~ 291 (515)
+..++.+|||||..|+|+|..|.+. |.+++|++..+.+|.. +|+.....++..+++.
T Consensus 143 --------r~~~~avVIGGGLLGlEaA~~L~~~--------------Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~ 200 (793)
T COG1251 143 --------RNKKKAVVIGGGLLGLEAARGLKDL--------------GMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDL 200 (793)
T ss_pred --------hccCCcEEEccchhhhHHHHHHHhC--------------CCceEEEeecchHHHHhhhhHHHHHHHHHHHhh
Confidence 2455789999999999999999986 7899999999988764 8999999999999999
Q ss_pred CeEEEcCcEEEEEeC-CeEEEEecCCCceEEEecCeEEEccCCCCccchHHHHHHhCCCCCCceeeCCCccccCCCCEEE
Q 010217 292 GIDVKLGSMVVKVTD-KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEWLRVEGSDSIYA 370 (515)
Q Consensus 292 gV~v~~~~~v~~i~~-~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~~~~~~g~i~vd~~l~t~~~~~IyA 370 (515)
||+++++....++.+ +.+.....++|+. +++|+||||+|+ +|++ .+....|+.-+.+|+||++||| +.|+|||
T Consensus 201 Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~--i~ad~VV~a~GI--rPn~-ela~~aGlavnrGIvvnd~mqT-sdpdIYA 274 (793)
T COG1251 201 GIKVLLEKNTEEIVGEDKVEGVRFADGTE--IPADLVVMAVGI--RPND-ELAKEAGLAVNRGIVVNDYMQT-SDPDIYA 274 (793)
T ss_pred cceeecccchhhhhcCcceeeEeecCCCc--ccceeEEEeccc--cccc-HhHHhcCcCcCCCeeecccccc-cCCCeee
Confidence 999999998888864 4456666678986 999999999995 8888 8889999965669999999999 9999999
Q ss_pred eccccccCccchHHHHHHHHHh----hccC-------CCCCCCHHHH-------------HHHH--Hhhhh----hCCcc
Q 010217 371 LGDCATVNQRRVMEDIAAIFSK----ADKD-------NSGTLTVKEF-------------QEVI--KDICE----RYPQV 420 (515)
Q Consensus 371 ~GD~~~~~~~~~~~~~~~~~~~----a~~~-------~~g~~~~~~~-------------~~~~--~~~~~----~~~~~ 420 (515)
+|+|+.+... ....+..+|.. |+.. ..|.+....+ ++.- +.+.- +--+.
T Consensus 275 vGEcae~~g~-~yGLVaP~yeq~~v~a~hl~~~~~~~y~gsv~stkLKv~Gvdl~S~GD~~e~~~~~~iv~~D~~~~iYK 353 (793)
T COG1251 275 VGECAEHRGK-VYGLVAPLYEQAKVLADHLCGGEAEAYEGSVTSTKLKVSGVDVFSAGDFQETEGAESIVFRDEQRGIYK 353 (793)
T ss_pred hhhHHHhcCc-cceehhHHHHHHHHHHHHhccCcccccccccchhhhcccccceeeccchhhcCCCceEEEeccccccee
Confidence 9999997443 22222222221 2111 2222221111 1000 00000 11124
Q ss_pred eeecccCcccch--------hHhHHhhhccccccccccCHHHHHHHHhchh-----cCCCCChHHHHHHhhhhHHHHHHh
Q 010217 421 ELYLKNKKMGDF--------GDLLKEAKGDVAQDAVELNIEEFKKALSEVD-----SQMKNLPATAQVAAQQGKYLAKCF 487 (515)
Q Consensus 421 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d-----~~~~~~~~~aq~a~q~g~~l~~~~ 487 (515)
+++++++++.|+ .+.+.+++.+ +.++++..+.|.-+. ....++|-.+|++.=+|--=|...
T Consensus 354 rlvL~dd~IvgavL~GDt~d~~~l~~li~~------~~~~se~r~~li~~~~~~~~~~v~~lpd~~~IC~Cn~VtKG~I~ 427 (793)
T COG1251 354 KLVLKDDKIVGAVLYGDTSDGGWLLDLILK------GADISEIRDTLILPQGSAPSLGVAALPDSAQICGCNGVTKGAII 427 (793)
T ss_pred EEEEeCCeEEEEEEEeecccchHHHHHHhc------CCCccccchhhccccccCCccchhhCCCCCeeecCCCccHHHHH
Confidence 677899988877 4555566654 455555555554443 355678888887765554444444
Q ss_pred hhh
Q 010217 488 NRM 490 (515)
Q Consensus 488 ~~~ 490 (515)
+++
T Consensus 428 ~aI 430 (793)
T COG1251 428 GAI 430 (793)
T ss_pred HHH
Confidence 444
No 45
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=100.00 E-value=5.4e-32 Score=284.99 Aligned_cols=280 Identities=20% Similarity=0.282 Sum_probs=203.7
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCc----cchhcc-CcccccccccchHHHHhhcCceEEEE
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPL----LPSVTC-GTVEARSIVEPVRNIVRKKNVDICFW 130 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~----~~~~~~-g~~~~~~~~~~~~~~~~~~~i~v~~~ 130 (515)
...+||+||||||||++||.+|++.|++|+||++. +|++.. ++.+.. ......++...+...++++++++. .
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~-~ 285 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIM-N 285 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEE-c
Confidence 44689999999999999999999999999999864 444321 111110 112234566777888888998863 4
Q ss_pred EeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCCCCCCCCc----cccccChhHHHHHHHHHHHH
Q 010217 131 EAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEEN----CNFLKEVEDAQRIRRNVIES 206 (515)
Q Consensus 131 ~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ipG~~~~----~~~~~~~~~a~~~~~~~~~~ 206 (515)
..+|..++.....+.+... ++ ..+.||+||+|||+.++.+++||..++ +++....
T Consensus 286 ~~~V~~I~~~~~~~~V~~~------~g--~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~------------- 344 (517)
T PRK15317 286 LQRASKLEPAAGLIEVELA------NG--AVLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHC------------- 344 (517)
T ss_pred CCEEEEEEecCCeEEEEEC------CC--CEEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeecc-------------
Confidence 6789999886544443321 11 178999999999999999999986431 1111000
Q ss_pred HHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccccccHHHHHHHHH
Q 010217 207 FEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEE 286 (515)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~ 286 (515)
+....++++|+|||+|++|+|+|..|..+ +.+|+++++.+.+.. .+.+.+
T Consensus 345 ----------~~~~~~gk~VvVVGgG~~g~e~A~~L~~~--------------~~~Vtlv~~~~~l~~------~~~l~~ 394 (517)
T PRK15317 345 ----------DGPLFKGKRVAVIGGGNSGVEAAIDLAGI--------------VKHVTVLEFAPELKA------DQVLQD 394 (517)
T ss_pred ----------CchhcCCCEEEEECCCHHHHHHHHHHHhc--------------CCEEEEEEECccccc------cHHHHH
Confidence 00112578999999999999999999886 579999998876532 233455
Q ss_pred Hhhc-CCeEEEcCcEEEEEeCC--e---EEEEecCCCceEEEecCeEEEccCCCCccchHHHHHHh-CCCCCCceeeCCC
Q 010217 287 KFSR-DGIDVKLGSMVVKVTDK--E---IFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQV-GQTNRRALATDEW 359 (515)
Q Consensus 287 ~l~~-~gV~v~~~~~v~~i~~~--~---v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~-~~~~~g~i~vd~~ 359 (515)
.+.+ .||++++++.+.++.++ . +.+.+..+|+..+++||.+++++| ..|++ .+++.. .++.+|+|.||++
T Consensus 395 ~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G--~~p~~-~~l~~~v~~~~~g~i~vd~~ 471 (517)
T PRK15317 395 KLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIG--LVPNT-EWLKGTVELNRRGEIIVDAR 471 (517)
T ss_pred HHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeEC--CccCc-hHHhhheeeCCCCcEEECcC
Confidence 5554 69999999999999765 2 344433456656799999999999 57877 555543 2367799999999
Q ss_pred ccccCCCCEEEeccccccCccchHHHHHHHHHhh
Q 010217 360 LRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKA 393 (515)
Q Consensus 360 l~t~~~~~IyA~GD~~~~~~~~~~~~~~~~~~~a 393 (515)
+|| ++|+|||+|||+..+..++..++.++..++
T Consensus 472 l~T-s~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa 504 (517)
T PRK15317 472 GAT-SVPGVFAAGDCTTVPYKQIIIAMGEGAKAA 504 (517)
T ss_pred CCC-CCCCEEECccccCCCCCEEEEhhhhHHHHH
Confidence 998 999999999999987777777777766554
No 46
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=6.5e-32 Score=281.76 Aligned_cols=265 Identities=25% Similarity=0.346 Sum_probs=191.5
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhc--------------------cC------cccccc
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVT--------------------CG------TVEARS 111 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~--------------------~g------~~~~~~ 111 (515)
.+|||||||||||++||.+|++.|.+|+|||+ +.+|+++....+. .| ..+..+
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~~~~ 81 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKIDFKK 81 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccCHHH
Confidence 48999999999999999999999999999999 5667654321110 01 111112
Q ss_pred cccchH------------HHHhhcCceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCC
Q 010217 112 IVEPVR------------NIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (515)
Q Consensus 112 ~~~~~~------------~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ 179 (515)
+..... ..+...+++ ++.+++..++.. .+.+ ++ .++.||+||||||+. .|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g~~~~~~~~--~v~v-~~----------~~~~~d~lIiATGs~--~p~ 144 (460)
T PRK06292 82 VMARVRRERDRFVGGVVEGLEKKPKID--KIKGTARFVDPN--TVEV-NG----------ERIEAKNIVIATGSR--VPP 144 (460)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhCCCE--EEEEEEEEccCC--EEEE-Cc----------EEEEeCEEEEeCCCC--CCC
Confidence 222211 223334544 567777776643 4554 21 279999999999998 556
Q ss_pred CCCCCC-ccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccC
Q 010217 180 TPGVEE-NCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVK 258 (515)
Q Consensus 180 ipG~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~ 258 (515)
+||... ....+.+.+++..+ . ..+++++|||+|++|+|+|..|.++
T Consensus 145 ipg~~~~~~~~~~~~~~~~~~-------------~-------~~~k~v~VIGgG~~g~E~A~~l~~~------------- 191 (460)
T PRK06292 145 IPGVWLILGDRLLTSDDAFEL-------------D-------KLPKSLAVIGGGVIGLELGQALSRL------------- 191 (460)
T ss_pred CCCCcccCCCcEECchHHhCc-------------c-------ccCCeEEEECCCHHHHHHHHHHHHc-------------
Confidence 777531 01111222222211 1 1346999999999999999999886
Q ss_pred CCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEeCC---eEEEEecCCCceEEEecCeEEEccCCCC
Q 010217 259 DSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK---EIFTKVRGNGETSSMPYGMVVWSTGIAP 335 (515)
Q Consensus 259 ~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~---~v~~~~~~~G~~~~i~~D~vi~a~G~~~ 335 (515)
+.+|+++++.+++++.+++++.+.+++.|++. |++++++.+.+++.+ .+++. ..+|+..++++|.|++++| .
T Consensus 192 -g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~-~~~~~~~~i~~D~vi~a~G--~ 266 (460)
T PRK06292 192 -GVKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEEL-EKGGKTETIEADYVLVATG--R 266 (460)
T ss_pred -CCcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEE-EcCCceEEEEeCEEEEccC--C
Confidence 68999999999999999999999999999999 999999999999743 34443 2345544699999999999 6
Q ss_pred ccchHHH-HHHhCC--CCCCceeeCCCccccCCCCEEEeccccccCc
Q 010217 336 HAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQ 379 (515)
Q Consensus 336 ~p~~~~l-~~~~~~--~~~g~i~vd~~l~t~~~~~IyA~GD~~~~~~ 379 (515)
.|++..+ ++.+++ +.+|+|.||+++|| +.|+|||+|||+..++
T Consensus 267 ~p~~~~l~l~~~g~~~~~~g~i~vd~~~~t-s~~~IyA~GD~~~~~~ 312 (460)
T PRK06292 267 RPNTDGLGLENTGIELDERGRPVVDEHTQT-SVPGIYAAGDVNGKPP 312 (460)
T ss_pred ccCCCCCCcHhhCCEecCCCcEeECCCccc-CCCCEEEEEecCCCcc
Confidence 8888543 566776 56789999999998 9999999999998643
No 47
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.3e-31 Score=279.71 Aligned_cols=285 Identities=16% Similarity=0.261 Sum_probs=198.5
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcC------CCCCccCCccchhcc---------------------Ccc---
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISP------RNYFAFTPLLPSVTC---------------------GTV--- 107 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~------~~~~~~~~~~~~~~~---------------------g~~--- 107 (515)
.+||+||||||||++||.++++.|.+|+|||+ ...+++++....+.+ |..
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~~ 83 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVDG 83 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCCC
Confidence 58999999999999999999999999999998 245565532222111 100
Q ss_pred ---cccccc-----------cchHHHHhhcCceEEEEEeEEEEEecC--CCEEEEeeCCccCCCCCceEEeecCEEEEcc
Q 010217 108 ---EARSIV-----------EPVRNIVRKKNVDICFWEAECFKIDAE--NKKVYCRSSQNTNLNGKEEFCMDYDYLVIAM 171 (515)
Q Consensus 108 ---~~~~~~-----------~~~~~~~~~~~i~v~~~~~~v~~id~~--~~~v~~~~~~~~~~~~~~~~~~~~d~lviAt 171 (515)
+...+. ..+..+++..+++ ++.+++..++.. ...|.+... + ..+++||+|||||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g~~~~~~~~~~~~~v~v~~~------~--~~~~~~d~lViAT 153 (475)
T PRK06327 84 VKIDVAKMIARKDKVVKKMTGGIEGLFKKNKIT--VLKGRGSFVGKTDAGYEIKVTGE------D--ETVITAKHVIIAT 153 (475)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEEEecCCCCCCEEEEecC------C--CeEEEeCEEEEeC
Confidence 000001 1122334455655 677888888743 345665421 1 1279999999999
Q ss_pred CCCcCCCCCCCCCCccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHH
Q 010217 172 GARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLF 251 (515)
Q Consensus 172 G~~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~ 251 (515)
|+.|+.++..+... ...+ +.+++..+ . ..+++|+|||+|++|+|+|..+.++
T Consensus 154 Gs~p~~~p~~~~~~-~~~~-~~~~~~~~-------------~-------~~~~~vvVvGgG~~g~E~A~~l~~~------ 205 (475)
T PRK06327 154 GSEPRHLPGVPFDN-KIIL-DNTGALNF-------------T-------EVPKKLAVIGAGVIGLELGSVWRRL------ 205 (475)
T ss_pred CCCCCCCCCCCCCC-ceEE-CcHHHhcc-------------c-------ccCCeEEEECCCHHHHHHHHHHHHc------
Confidence 99997543222211 1111 21221111 1 1346999999999999999999876
Q ss_pred hhCcccCCCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEeCC--eEEEEec-CCCceEEEecCeEE
Q 010217 252 KLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK--EIFTKVR-GNGETSSMPYGMVV 328 (515)
Q Consensus 252 ~~~p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~v~~~~~-~~G~~~~i~~D~vi 328 (515)
+.+|+++++.+.+++.+++++.+.+.+.|++.||+++++++|++++.+ .+.+... .+|+..++++|.|+
T Consensus 206 --------g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl 277 (475)
T PRK06327 206 --------GAEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLI 277 (475)
T ss_pred --------CCeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEE
Confidence 689999999999999899999999999999999999999999999743 4443321 23554569999999
Q ss_pred EccCCCCccchHHH-HHHhCC--CCCCceeeCCCccccCCCCEEEeccccccCccchHHHHHHHHHh
Q 010217 329 WSTGIAPHAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSK 392 (515)
Q Consensus 329 ~a~G~~~~p~~~~l-~~~~~~--~~~g~i~vd~~l~t~~~~~IyA~GD~~~~~~~~~~~~~~~~~~~ 392 (515)
+++| ..|++..+ ++.+++ +.+|+|.||+++|| +.|+|||+|||+..+. ....+..++..+
T Consensus 278 ~a~G--~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~T-s~~~VyA~GD~~~~~~-~~~~A~~~G~~a 340 (475)
T PRK06327 278 VSIG--RVPNTDGLGLEAVGLKLDERGFIPVDDHCRT-NVPNVYAIGDVVRGPM-LAHKAEEEGVAV 340 (475)
T ss_pred EccC--CccCCCCCCcHhhCceeCCCCeEeECCCCcc-CCCCEEEEEeccCCcc-hHHHHHHHHHHH
Confidence 9999 67877443 566666 67899999999998 9999999999997543 334444444433
No 48
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=1.6e-31 Score=279.46 Aligned_cols=264 Identities=20% Similarity=0.263 Sum_probs=189.1
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCC--------CCccCCccchhcc---------------------Cc--
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN--------YFAFTPLLPSVTC---------------------GT-- 106 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~--------~~~~~~~~~~~~~---------------------g~-- 106 (515)
.+||+||||||||++||.+|++.|.+|+|||+.. .+|++++...+.+ |.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~~ 84 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWKT 84 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCCC
Confidence 4899999999999999999999999999999631 3677643222211 11
Q ss_pred ---ccccccccchHHHH-----------hhcCceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccC
Q 010217 107 ---VEARSIVEPVRNIV-----------RKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMG 172 (515)
Q Consensus 107 ---~~~~~~~~~~~~~~-----------~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG 172 (515)
.+..++.+.....+ +..+++ ++.+++...+ .+.|.+.+. ++...+.||+||||||
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~--~i~g~a~~~~--~~~v~v~~~-------~~~~~i~~d~lIIATG 153 (499)
T PTZ00052 85 SSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVE--YINGLAKLKD--EHTVSYGDN-------SQEETITAKYILIATG 153 (499)
T ss_pred CCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcE--EEEEEEEEcc--CCEEEEeeC-------CCceEEECCEEEEecC
Confidence 11122222222222 223433 5677776655 346666431 1123799999999999
Q ss_pred CCcCCC-CCCCCCCccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHH
Q 010217 173 ARANTF-NTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLF 251 (515)
Q Consensus 173 ~~~~~~-~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~ 251 (515)
+.|+.| ++||..+.+. +.++...+ . ..+++++|||+|++|+|+|..|+++
T Consensus 154 s~p~~p~~i~G~~~~~~---~~~~~~~~-------------~-------~~~~~vvIIGgG~iG~E~A~~l~~~------ 204 (499)
T PTZ00052 154 GRPSIPEDVPGAKEYSI---TSDDIFSL-------------S-------KDPGKTLIVGASYIGLETAGFLNEL------ 204 (499)
T ss_pred CCCCCCCCCCCccceee---cHHHHhhh-------------h-------cCCCeEEEECCCHHHHHHHHHHHHc------
Confidence 999887 4898754322 22222111 0 1235999999999999999999986
Q ss_pred hhCcccCCCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEeC--CeEEEEecCCCceEEEecCeEEE
Q 010217 252 KLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVW 329 (515)
Q Consensus 252 ~~~p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D~vi~ 329 (515)
+.+||++++ +.+++.+++++++.+++.|++.||++++++.+.+++. +.+.+. ..+|+. +++|.|+|
T Consensus 205 --------G~~Vtli~~-~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~-~~~g~~--i~~D~vl~ 272 (499)
T PTZ00052 205 --------GFDVTVAVR-SIPLRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVL-FSDGTT--ELFDTVLY 272 (499)
T ss_pred --------CCcEEEEEc-CcccccCCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEE-ECCCCE--EEcCEEEE
Confidence 689999987 4677889999999999999999999999999988864 334433 345764 89999999
Q ss_pred ccCCCCccchHHH-HHHhCC--CCCCceeeCCCccccCCCCEEEecccccc
Q 010217 330 STGIAPHAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATV 377 (515)
Q Consensus 330 a~G~~~~p~~~~l-~~~~~~--~~~g~i~vd~~l~t~~~~~IyA~GD~~~~ 377 (515)
++| ..|++..+ ++.+++ +.+|.+.+++. +| +.|+|||+|||+..
T Consensus 273 a~G--~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~T-s~p~IyAiGDv~~~ 319 (499)
T PTZ00052 273 ATG--RKPDIKGLNLNAIGVHVNKSNKIIAPND-CT-NIPNIFAVGDVVEG 319 (499)
T ss_pred eeC--CCCCccccCchhcCcEECCCCCEeeCCC-cC-CCCCEEEEEEecCC
Confidence 999 68888444 466776 67788777776 87 99999999999963
No 49
>PRK12831 putative oxidoreductase; Provisional
Probab=100.00 E-value=6.4e-32 Score=279.69 Aligned_cols=290 Identities=18% Similarity=0.179 Sum_probs=193.9
Q ss_pred CCCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEE
Q 010217 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAEC 134 (515)
Q Consensus 55 ~~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v 134 (515)
..+.++|+|||||||||+||.+|++.|++|+|+|+.+.+++... ...+......+.+.....++++++|+++. .+..+
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~-~gip~~~l~~~~~~~~~~~~~~~~gv~i~-~~~~v 214 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV-YGIPEFRLPKETVVKKEIENIKKLGVKIE-TNVVV 214 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee-ecCCCccCCccHHHHHHHHHHHHcCCEEE-cCCEE
Confidence 45678999999999999999999999999999999887765431 11111122222355555677888898763 33333
Q ss_pred EEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCC-CcCCCCCCCCC-CccccccChhHHHHHHHHHHHHHHhcCC
Q 010217 135 FKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGA-RANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASL 212 (515)
Q Consensus 135 ~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~-~~~~~~ipG~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 212 (515)
.+.+.+.+.. ..+.||+||||||+ .|+.+++||.+ ++++...++.....+... . .
T Consensus 215 ------~~~v~~~~~~---------~~~~~d~viiAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~----~----~ 271 (464)
T PRK12831 215 ------GKTVTIDELL---------EEEGFDAVFIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKA----Y----K 271 (464)
T ss_pred ------CCcCCHHHHH---------hccCCCEEEEeCCCCCCCCCCCCCcCCcCcEEHHHHHHHHHhccc----c----c
Confidence 1223332210 14679999999999 68999999976 444433222211111000 0 0
Q ss_pred CCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccc-ccccccHHHHHHHHHHhhcC
Q 010217 213 PNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADH-ILNMFDKRITAFAEEKFSRD 291 (515)
Q Consensus 213 ~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~-~l~~~~~~~~~~~~~~l~~~ 291 (515)
+.. +.....+++|+|||||++|+|+|..+.++ +.+|+++++.+. .++....++ +.+++.
T Consensus 272 ~~~-~~~~~~gk~VvVIGgG~va~d~A~~l~r~--------------Ga~Vtlv~r~~~~~m~a~~~e~-----~~a~~e 331 (464)
T PRK12831 272 PEY-DTPIKVGKKVAVVGGGNVAMDAARTALRL--------------GAEVHIVYRRSEEELPARVEEV-----HHAKEE 331 (464)
T ss_pred ccc-cCcccCCCeEEEECCcHHHHHHHHHHHHc--------------CCEEEEEeecCcccCCCCHHHH-----HHHHHc
Confidence 000 00113578999999999999999999987 578999998764 233222221 345678
Q ss_pred CeEEEcCcEEEEEeC--C-eE---EEEec------C---------CCceEEEecCeEEEccCCCCccchHHHHHH-hCC-
Q 010217 292 GIDVKLGSMVVKVTD--K-EI---FTKVR------G---------NGETSSMPYGMVVWSTGIAPHAIIKDFMKQ-VGQ- 348 (515)
Q Consensus 292 gV~v~~~~~v~~i~~--~-~v---~~~~~------~---------~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~-~~~- 348 (515)
||++++++.+.++.. + .+ .+... . +|+..+++||.||+|+| +.|++ .++.. .++
T Consensus 332 GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG--~~p~~-~~~~~~~gl~ 408 (464)
T PRK12831 332 GVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLG--TSPNP-LISSTTKGLK 408 (464)
T ss_pred CCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCC--CCCCh-hhhcccCCce
Confidence 999999999999853 2 23 22210 0 34545799999999999 57777 55554 565
Q ss_pred -CCCCceeeCCC-ccccCCCCEEEeccccccCccchHHHHHHHHHhhc
Q 010217 349 -TNRRALATDEW-LRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKAD 394 (515)
Q Consensus 349 -~~~g~i~vd~~-l~t~~~~~IyA~GD~~~~~~~~~~~~~~~~~~~a~ 394 (515)
+.+|.|.||++ ++| +.|+|||+|||+..+. .+..++.++..+|.
T Consensus 409 ~~~~G~i~vd~~~~~T-s~pgVfAaGD~~~g~~-~v~~Ai~~G~~AA~ 454 (464)
T PRK12831 409 INKRGCIVADEETGLT-SKEGVFAGGDAVTGAA-TVILAMGAGKKAAK 454 (464)
T ss_pred ECCCCcEEECCCCCcc-CCCCEEEeCCCCCCch-HHHHHHHHHHHHHH
Confidence 67789999998 888 9999999999998643 46777777766554
No 50
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=100.00 E-value=5.3e-32 Score=279.93 Aligned_cols=289 Identities=17% Similarity=0.142 Sum_probs=192.1
Q ss_pred CCCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEE
Q 010217 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAEC 134 (515)
Q Consensus 55 ~~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v 134 (515)
....++|+||||||||++||..|++.|++|+|||+.+..++... ...+... .+.++.....+.+.+.|+++++ +. +
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~-~gip~~~-~~~~~~~~~~~~l~~~gv~~~~-~~-~ 205 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT-YGIPEFR-LPKEIVVTEIKTLKKLGVTFRM-NF-L 205 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee-ecCCCcc-CCHHHHHHHHHHHHhCCcEEEe-CC-c
Confidence 34578999999999999999999999999999999877665321 1111111 2234444455667778877532 22 2
Q ss_pred EEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCC-CcCCCCCCCCC-CccccccChhHHHHHHHHHHHHHHhcCC
Q 010217 135 FKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGA-RANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASL 212 (515)
Q Consensus 135 ~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~-~~~~~~ipG~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 212 (515)
. .+.+.+.+. ...||+||||||+ .|+.+++||.+ .+++...++ ..... ......+
T Consensus 206 v-----~~~v~~~~~-----------~~~yd~viiAtGa~~p~~~~ipG~~~~gv~~~~~~------l~~~~-~~~~~~~ 262 (449)
T TIGR01316 206 V-----GKTATLEEL-----------FSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDF------LTRAN-LMKAYEF 262 (449)
T ss_pred c-----CCcCCHHHH-----------HhhCCEEEEeCCCCCCCcCCCCCCCCCCcEEHHHH------HHHHh-hcccccc
Confidence 1 223333211 3469999999998 68889999975 333322221 11110 0000001
Q ss_pred CCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccccccHHHHHHHHHHhhcCC
Q 010217 213 PNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDG 292 (515)
Q Consensus 213 ~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~g 292 (515)
+.. ......+++|+|||+|++|+|+|..+.++ +.+||++++.++.... ......+.+++.|
T Consensus 263 ~~~-~~~~~~gk~VvVIGgG~~a~d~A~~l~~~--------------G~~Vtlv~~~~~~~~~----~~~~~~~~l~~~G 323 (449)
T TIGR01316 263 PHA-DTPVYAGKSVVVIGGGNTAVDSARTALRL--------------GAEVHCLYRRTREDMT----ARVEEIAHAEEEG 323 (449)
T ss_pred ccc-CCcccCCCeEEEECCCHHHHHHHHHHHHc--------------CCEEEEEeecCcccCC----CCHHHHHHHHhCC
Confidence 100 00112568999999999999999999986 5789999988652111 1122235678899
Q ss_pred eEEEcCcEEEEEeC---CeE---EEEec------CC---------CceEEEecCeEEEccCCCCccchHHHHHHhCC--C
Q 010217 293 IDVKLGSMVVKVTD---KEI---FTKVR------GN---------GETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--T 349 (515)
Q Consensus 293 V~v~~~~~v~~i~~---~~v---~~~~~------~~---------G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~~~--~ 349 (515)
|++++++.++++.. +.+ .+... .+ |+..++++|.||+|+| ..|++ .+++.+++ +
T Consensus 324 V~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG--~~p~~-~~l~~~gl~~~ 400 (449)
T TIGR01316 324 VKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIG--NGSNP-IMAETTRLKTS 400 (449)
T ss_pred CEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCC--CCCCc-hhhhccCcccC
Confidence 99999999999863 223 22210 12 3344699999999999 57776 56777776 5
Q ss_pred CCCceeeCCCccccCCCCEEEeccccccCccchHHHHHHHHHhhc
Q 010217 350 NRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKAD 394 (515)
Q Consensus 350 ~~g~i~vd~~l~t~~~~~IyA~GD~~~~~~~~~~~~~~~~~~~a~ 394 (515)
.+|+|.||++++| +.|+|||+|||+..+ ..+..++.++..+|.
T Consensus 401 ~~G~i~vd~~~~T-s~~~VfA~GD~~~g~-~~v~~Ai~~G~~AA~ 443 (449)
T TIGR01316 401 ERGTIVVDEDQRT-SIPGVFAGGDIILGA-ATVIRAMGQGKRAAK 443 (449)
T ss_pred CCCeEEeCCCCcc-CCCCEEEecCCCCCc-HHHHHHHHHHHHHHH
Confidence 6789999999998 999999999999754 345667777665553
No 51
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=100.00 E-value=5.9e-31 Score=271.92 Aligned_cols=262 Identities=24% Similarity=0.418 Sum_probs=209.0
Q ss_pred HHHHhccC--CCCeEEEEcCCCCCccCC-ccchhccCcccc-ccccc-chHHHHhhcCceEEEEEeEEEEEecCCCEEEE
Q 010217 72 SFLKNLNN--PSYDVQVISPRNYFAFTP-LLPSVTCGTVEA-RSIVE-PVRNIVRKKNVDICFWEAECFKIDAENKKVYC 146 (515)
Q Consensus 72 saA~~L~~--~g~~V~vie~~~~~~~~~-~~~~~~~g~~~~-~~~~~-~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~ 146 (515)
+||++|++ .+++|||||+++.+.|.+ .++.+..+.... ++... ....++.++++++ +.+++|+.||+.++.|.+
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~-~~~~~V~~id~~~~~v~~ 79 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDV-KTNHEVIEVNDERQTVVV 79 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeE-EecCEEEEEECCCCEEEE
Confidence 46777774 368899999999998887 577776665442 33333 3455668889876 357899999999999988
Q ss_pred eeCCccCCCCCceEEee--cCEEEEccCCCcCCCCCCCCC-CccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhcc
Q 010217 147 RSSQNTNLNGKEEFCMD--YDYLVIAMGARANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRI 223 (515)
Q Consensus 147 ~~~~~~~~~~~~~~~~~--~d~lviAtG~~~~~~~ipG~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (515)
.+.. +++ .+. ||+||||||++|+.|++||++ +.++.+++..++..++..+.. ..+
T Consensus 80 ~~~~-----~~~--~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~---------------~~~ 137 (427)
T TIGR03385 80 RNNK-----TNE--TYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDK---------------NKV 137 (427)
T ss_pred EECC-----CCC--EEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhh---------------cCC
Confidence 7532 122 455 999999999999999999986 567778888888877766521 245
Q ss_pred ceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccc-cccccHHHHHHHHHHhhcCCeEEEcCcEEE
Q 010217 224 LHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHI-LNMFDKRITAFAEEKFSRDGIDVKLGSMVV 302 (515)
Q Consensus 224 ~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~-l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~ 302 (515)
++|+|||+|++|+|+|..|.+. +.+|+++++.+.+ .+.+++++.+.+.+.|++.||++++++.+.
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~--------------g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~ 203 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRER--------------GKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVD 203 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhC--------------CCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEE
Confidence 7999999999999999999875 6799999999988 466888999999999999999999999999
Q ss_pred EEeCCeEEEEecCCCceEEEecCeEEEccCCCCccchHHHHHHhCC--CCCCceeeCCCccccCCCCEEEecccccc
Q 010217 303 KVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATV 377 (515)
Q Consensus 303 ~i~~~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~~~--~~~g~i~vd~~l~t~~~~~IyA~GD~~~~ 377 (515)
+++.++..+. ..+|+. +++|.+|||+| ..|++ .+++.+++ +.+|+|.||+++|| +.|+|||+|||+..
T Consensus 204 ~i~~~~~~v~-~~~g~~--i~~D~vi~a~G--~~p~~-~~l~~~gl~~~~~G~i~vd~~~~t-~~~~Vya~GD~~~~ 273 (427)
T TIGR03385 204 SIEGEERVKV-FTSGGV--YQADMVILATG--IKPNS-ELAKDSGLKLGETGAIWVNEKFQT-SVPNIYAAGDVAES 273 (427)
T ss_pred EEecCCCEEE-EcCCCE--EEeCEEEECCC--ccCCH-HHHHhcCcccCCCCCEEECCCcEe-CCCCEEEeeeeEEe
Confidence 9986554322 245664 99999999999 57877 67777776 56789999999998 89999999999975
No 52
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.98 E-value=1.1e-30 Score=283.20 Aligned_cols=280 Identities=19% Similarity=0.219 Sum_probs=193.0
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEE
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECF 135 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~ 135 (515)
.+.++|+||||||||++||.+|++.|++|+|+|+.+.+++... ...++...+.+.+....+++.+.|+++++ +..+
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr--~~IP~~Rlp~evL~~die~l~~~GVe~~~-gt~V- 612 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVK--NIIPQFRIPAELIQHDIEFVKAHGVKFEF-GCSP- 612 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCccee--eecccccccHHHHHHHHHHHHHcCCEEEe-Ccee-
Confidence 4678999999999999999999999999999999988776531 22233222334455555677788887643 3333
Q ss_pred EEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCc-CCCCCCCCCCccccccChhHHHHHHHHHHHHHHhcCCCC
Q 010217 136 KIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA-NTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPN 214 (515)
Q Consensus 136 ~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~-~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 214 (515)
.+ .+... ....||+||||||+++ ..+++||.+++++ ...+....++.. .
T Consensus 613 di-------~le~L----------~~~gYDaVILATGA~~~~~l~IpG~~~gV~--saldfL~~~k~~-------~---- 662 (1019)
T PRK09853 613 DL-------TVEQL----------KNEGYDYVVVAIGADKNGGLKLEGGNQNVI--KALPFLEEYKNK-------G---- 662 (1019)
T ss_pred EE-------Ehhhh----------eeccCCEEEECcCCCCCCCCCCCCccCCce--ehHHHHHHHhhh-------c----
Confidence 22 22211 1567999999999974 5668888654432 122111111100 0
Q ss_pred CCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCC-cEEEEEeccc-cccccccHHHHHHHHHHhhcCC
Q 010217 215 LSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDS-VKITLLEAAD-HILNMFDKRITAFAEEKFSRDG 292 (515)
Q Consensus 215 ~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~-~~Vtlv~~~~-~~l~~~~~~~~~~~~~~l~~~g 292 (515)
.....+++|+|||||++|+|+|..+.+++ + .+|+++++++ ..++..+.++.+ .+ +.|
T Consensus 663 ---~~~~~GKrVVVIGGGnVAmD~Ar~a~Rlg-------------GakeVTLVyRr~~~~MPA~~eEle~----Al-eeG 721 (1019)
T PRK09853 663 ---TALKLGKHVVVVGGGNTAMDAARAALRVP-------------GVEKVTVVYRRTKQEMPAWREEYEE----AL-EDG 721 (1019)
T ss_pred ---ccccCCCEEEEECCChHHHHHHHHHHhcC-------------CCceEEEEEccCcccccccHHHHHH----HH-HcC
Confidence 00125789999999999999999887752 3 4899999876 455655544432 22 469
Q ss_pred eEEEcCcEEEEEeC-CeEEEEe--------------cCCCceEEEecCeEEEccCCCCccchHHHHHHhCC--CCCCcee
Q 010217 293 IDVKLGSMVVKVTD-KEIFTKV--------------RGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--TNRRALA 355 (515)
Q Consensus 293 V~v~~~~~v~~i~~-~~v~~~~--------------~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~~~--~~~g~i~ 355 (515)
|+++.++.+.++.. +.+.... ..+|+..+++||.||+|+| ..|++ .+++..++ +.+|+|.
T Consensus 722 Ve~~~~~~p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG--~~Pnt-elle~~GL~ld~~G~I~ 798 (1019)
T PRK09853 722 VEFKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIG--EQVDT-ELLKANGIPLDKKGWPV 798 (1019)
T ss_pred CEEEeCCceEEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCC--CcCCh-hHHHhcCccccCCCCEE
Confidence 99999999998873 3332210 1124445799999999999 57887 56777776 6778999
Q ss_pred eCCCccccCCCCEEEeccccccCccchHHHHHHHHHhhcc
Q 010217 356 TDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKADK 395 (515)
Q Consensus 356 vd~~l~t~~~~~IyA~GD~~~~~~~~~~~~~~~~~~~a~~ 395 (515)
||++++| +.|+|||+|||+..+. .+..|+.++..+|..
T Consensus 799 VDetlqT-s~pgVFAaGD~a~Gp~-tvv~Ai~qGr~AA~n 836 (1019)
T PRK09853 799 VDANGET-SLTNVYMIGDVQRGPS-TIVAAIADARRAADA 836 (1019)
T ss_pred eCCCccc-CCCCEEEEeccccCch-HHHHHHHHHHHHHHH
Confidence 9999998 9999999999997654 466777777766543
No 53
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.97 E-value=4.3e-31 Score=248.94 Aligned_cols=273 Identities=19% Similarity=0.283 Sum_probs=211.2
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCccc----------------------------
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVE---------------------------- 108 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~---------------------------- 108 (515)
..+||+|||+||+|..||...++.|++.+.||++..+|++++.-++.+....
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d 117 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD 117 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence 4799999999999999999999999999999999999987654333221100
Q ss_pred -----------ccccccchHHHHhhcCceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCC
Q 010217 109 -----------ARSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANT 177 (515)
Q Consensus 109 -----------~~~~~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~ 177 (515)
...+..-+..++++.++ .++.+....+++.. |.+... +++.+.+.++.+|||||+.-
T Consensus 118 l~~~~~~k~~~vk~Lt~gi~~lfkknkV--~~~kG~gsf~~p~~--V~v~k~------dg~~~ii~aKnIiiATGSeV-- 185 (506)
T KOG1335|consen 118 LQAMMKAKDNAVKQLTGGIENLFKKNKV--TYVKGFGSFLDPNK--VSVKKI------DGEDQIIKAKNIIIATGSEV-- 185 (506)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhcCe--EEEeeeEeecCCce--EEEecc------CCCceEEeeeeEEEEeCCcc--
Confidence 01111223445566664 47788888888774 444322 23356899999999999942
Q ss_pred CCCCCCC--CccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCc
Q 010217 178 FNTPGVE--ENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYP 255 (515)
Q Consensus 178 ~~ipG~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p 255 (515)
+++||.. +..+. +...|. +|.. -+++++|||+|.+|+|++.-..++
T Consensus 186 ~~~PGI~IDekkIV--SStgAL-------------sL~~-------vPk~~~viG~G~IGLE~gsV~~rL---------- 233 (506)
T KOG1335|consen 186 TPFPGITIDEKKIV--SSTGAL-------------SLKE-------VPKKLTVIGAGYIGLEMGSVWSRL---------- 233 (506)
T ss_pred CCCCCeEecCceEE--ecCCcc-------------chhh-------CcceEEEEcCceeeeehhhHHHhc----------
Confidence 3456763 22111 111111 1222 335999999999999999999987
Q ss_pred ccCCCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEeCC---e--EEEEecCCCceEEEecCeEEEc
Q 010217 256 KVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK---E--IFTKVRGNGETSSMPYGMVVWS 330 (515)
Q Consensus 256 ~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~---~--v~~~~~~~G~~~~i~~D~vi~a 330 (515)
|.+||+++-.+.+.+.+|.++++.+++.|.+.|++|+++++|..++.+ . +.+.+..+|+..+++||.++++
T Consensus 234 ----GseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVs 309 (506)
T KOG1335|consen 234 ----GSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVS 309 (506)
T ss_pred ----CCeEEEEEehhhhccccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEE
Confidence 689999999999999999999999999999999999999999999743 2 5556667788889999999999
Q ss_pred cCCCCccchHHH-HHHhCC--CCCCceeeCCCccccCCCCEEEeccccccCcc
Q 010217 331 TGIAPHAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQR 380 (515)
Q Consensus 331 ~G~~~~p~~~~l-~~~~~~--~~~g~i~vd~~l~t~~~~~IyA~GD~~~~~~~ 380 (515)
+| ++|.++.| ++.+|+ +.+|+|.||..++| .+|+||++|||...|+-
T Consensus 310 iG--RrP~t~GLgle~iGi~~D~r~rv~v~~~f~t-~vP~i~~IGDv~~gpML 359 (506)
T KOG1335|consen 310 IG--RRPFTEGLGLEKIGIELDKRGRVIVNTRFQT-KVPHIYAIGDVTLGPML 359 (506)
T ss_pred cc--CcccccCCChhhcccccccccceeccccccc-cCCceEEecccCCcchh
Confidence 99 89999888 888888 77899999999998 99999999999998753
No 54
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.97 E-value=3.4e-30 Score=273.41 Aligned_cols=271 Identities=17% Similarity=0.248 Sum_probs=191.0
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCC-CCCccCCccchhcc-----------------------Ccc------
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPR-NYFAFTPLLPSVTC-----------------------GTV------ 107 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~-~~~~~~~~~~~~~~-----------------------g~~------ 107 (515)
.+||+|||+|+||++||..+++.|.+|+|||+. ..+|++++..++.+ |..
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~~ 195 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKN 195 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccccc
Confidence 579999999999999999999999999999974 35777654333321 110
Q ss_pred ------------------ccccccc-----------chHHHHhhcCc-----eEEEEEeEEEEEecCCCEEEEeeCCccC
Q 010217 108 ------------------EARSIVE-----------PVRNIVRKKNV-----DICFWEAECFKIDAENKKVYCRSSQNTN 153 (515)
Q Consensus 108 ------------------~~~~~~~-----------~~~~~~~~~~i-----~v~~~~~~v~~id~~~~~v~~~~~~~~~ 153 (515)
+...+.+ .+...+++.++ .+.++.+....+++. +|.+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~--~v~v~~----- 268 (659)
T PTZ00153 196 GKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKN--TIKSEK----- 268 (659)
T ss_pred cccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCC--eEEEcc-----
Confidence 0000011 11222333331 134566666666543 454431
Q ss_pred CCCCceEEeecCEEEEccCCCcCCCCCCCCCC-ccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCC
Q 010217 154 LNGKEEFCMDYDYLVIAMGARANTFNTPGVEE-NCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGG 232 (515)
Q Consensus 154 ~~~~~~~~~~~d~lviAtG~~~~~~~ipG~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG 232 (515)
++ .++.||+||||||++|..|++++.+. .++ +.+++..+. ..+++|+|||+|
T Consensus 269 --~g--~~i~ad~lIIATGS~P~~P~~~~~~~~~V~---ts~d~~~l~--------------------~lpk~VvIVGgG 321 (659)
T PTZ00153 269 --SG--KEFKVKNIIIATGSTPNIPDNIEVDQKSVF---TSDTAVKLE--------------------GLQNYMGIVGMG 321 (659)
T ss_pred --CC--EEEECCEEEEcCCCCCCCCCCCCCCCCcEE---ehHHhhhhh--------------------hcCCceEEECCC
Confidence 11 27899999999999998887666532 232 333333221 123599999999
Q ss_pred hhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccccccHHHHHHHHHHh-hcCCeEEEcCcEEEEEeCCe---
Q 010217 233 PTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKF-SRDGIDVKLGSMVVKVTDKE--- 308 (515)
Q Consensus 233 ~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l-~~~gV~v~~~~~v~~i~~~~--- 308 (515)
++|+|+|..+..+ +.+||++++.+++++.+++++.+.+.+.+ ++.||++++++.|++++.+.
T Consensus 322 ~iGvE~A~~l~~~--------------G~eVTLIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~ 387 (659)
T PTZ00153 322 IIGLEFMDIYTAL--------------GSEVVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQ 387 (659)
T ss_pred HHHHHHHHHHHhC--------------CCeEEEEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCce
Confidence 9999999998876 68999999999999999999999998876 67999999999999997532
Q ss_pred -EEEEec--C----CC------ceEEEecCeEEEccCCCCccchHHH-HHHhCC-CCCCceeeCCCccccC-----CCCE
Q 010217 309 -IFTKVR--G----NG------ETSSMPYGMVVWSTGIAPHAIIKDF-MKQVGQ-TNRRALATDEWLRVEG-----SDSI 368 (515)
Q Consensus 309 -v~~~~~--~----~G------~~~~i~~D~vi~a~G~~~~p~~~~l-~~~~~~-~~~g~i~vd~~l~t~~-----~~~I 368 (515)
+.+... . ++ +..++++|.||||+| ..|++..| ++.+++ ..+|+|.||++|||.. +|+|
T Consensus 388 ~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtG--r~Pnt~~L~l~~~gi~~~~G~I~VDe~lqTs~~~~~~v~~I 465 (659)
T PTZ00153 388 PVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATG--RKPNTNNLGLDKLKIQMKRGFVSVDEHLRVLREDQEVYDNI 465 (659)
T ss_pred EEEEEEeccccccccccccccccceEEEcCEEEEEEC--cccCCccCCchhcCCcccCCEEeECCCCCcCCCCCCCCCCE
Confidence 444321 1 11 112599999999999 68888555 567776 3468999999999831 6999
Q ss_pred EEeccccccC
Q 010217 369 YALGDCATVN 378 (515)
Q Consensus 369 yA~GD~~~~~ 378 (515)
||+|||+..+
T Consensus 466 YAiGDv~g~~ 475 (659)
T PTZ00153 466 FCIGDANGKQ 475 (659)
T ss_pred EEEEecCCCc
Confidence 9999999754
No 55
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.97 E-value=8.6e-31 Score=288.94 Aligned_cols=289 Identities=13% Similarity=0.112 Sum_probs=196.6
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEE
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECF 135 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~ 135 (515)
.+.++|+|||||||||+||.+|++.|++|||||+.+.+|+.. ..+ .+....++++++...+.++..|++++. +..+
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l-~yG-IP~~rlp~~vi~~~i~~l~~~Gv~f~~-n~~v- 379 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVL-RYG-IPEFRLPNQLIDDVVEKIKLLGGRFVK-NFVV- 379 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceE-Ecc-CCCCcChHHHHHHHHHHHHhhcCeEEE-eEEe-
Confidence 457999999999999999999999999999999998877642 122 233333456677777788889987643 3322
Q ss_pred EEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCC-CcCCCCCCCCC-CccccccChhHHHHHHHHHHHHHH-hcCC
Q 010217 136 KIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGA-RANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFE-KASL 212 (515)
Q Consensus 136 ~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~-~~~~~~ipG~~-~~~~~~~~~~~a~~~~~~~~~~~~-~~~~ 212 (515)
++.+++++.. ...||+||||||+ .|+.+++||.+ .++++.. .+......... ....
T Consensus 380 -----G~dit~~~l~----------~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~~a~------dfL~~~~~~~~~~~~~ 438 (944)
T PRK12779 380 -----GKTATLEDLK----------AAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSAN------EFLTRVNLMRGLDDDY 438 (944)
T ss_pred -----ccEEeHHHhc----------cccCCEEEEeCCCCCCCcCCCCCCcCcCcEEHH------HHHHHHHhhccccccc
Confidence 3345554322 4679999999999 48999999975 3444322 22222111000 0000
Q ss_pred -CCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccc-ccccccHHHHHHHHHHhhc
Q 010217 213 -PNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADH-ILNMFDKRITAFAEEKFSR 290 (515)
Q Consensus 213 -~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~-~l~~~~~~~~~~~~~~l~~ 290 (515)
...+ ...+++|+|||||++|+++|..+.++ |.+|+++++++. .++....+ +.. ..+
T Consensus 439 ~~~~~---~~~Gk~VvVIGGG~tA~D~A~ta~R~--------------Ga~Vtlv~rr~~~~mpa~~~e----~~~-a~e 496 (944)
T PRK12779 439 ETPLP---EVKGKEVFVIGGGNTAMDAARTAKRL--------------GGNVTIVYRRTKSEMPARVEE----LHH-ALE 496 (944)
T ss_pred ccccc---ccCCCEEEEECCCHHHHHHHHHHHHc--------------CCEEEEEEecCcccccccHHH----HHH-HHH
Confidence 0000 12578999999999999999999986 578999998764 23332222 222 346
Q ss_pred CCeEEEcCcEEEEEeCC----eEE---EE--e------------cCCCceEEEecCeEEEccCCCCccchHHHH-HHhCC
Q 010217 291 DGIDVKLGSMVVKVTDK----EIF---TK--V------------RGNGETSSMPYGMVVWSTGIAPHAIIKDFM-KQVGQ 348 (515)
Q Consensus 291 ~gV~v~~~~~v~~i~~~----~v~---~~--~------------~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~-~~~~~ 348 (515)
.||++++++.++++..+ .+. +. . ..+|++.+++||.||+|+|+ .|+. .+. ...++
T Consensus 497 eGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~--~p~~-~l~~~~~gl 573 (944)
T PRK12779 497 EGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGN--TANP-IMKDAEPGL 573 (944)
T ss_pred CCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCc--CCCh-hhhhcccCc
Confidence 79999999999998632 222 11 0 01355567999999999995 5655 332 33455
Q ss_pred --CCCCceeeCC-CccccCCCCEEEeccccccCccchHHHHHHHHHhhccC
Q 010217 349 --TNRRALATDE-WLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKADKD 396 (515)
Q Consensus 349 --~~~g~i~vd~-~l~t~~~~~IyA~GD~~~~~~~~~~~~~~~~~~~a~~~ 396 (515)
+.+|.|.||+ +++| +.|+|||+|||+..+ ..+..|+.++..+|..+
T Consensus 574 e~~~~G~I~vd~~~~~T-s~pgVFAaGD~~~G~-~~vv~Ai~eGr~AA~~I 622 (944)
T PRK12779 574 KTNKWGTIEVEKGSQRT-SIKGVYSGGDAARGG-STAIRAAGDGQAAAKEI 622 (944)
T ss_pred eECCCCCEEECCCCCcc-CCCCEEEEEcCCCCh-HHHHHHHHHHHHHHHHH
Confidence 6789999997 4787 999999999999863 45788888888777543
No 56
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.97 E-value=6.3e-30 Score=264.91 Aligned_cols=261 Identities=19% Similarity=0.282 Sum_probs=187.4
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccC--------------------c------ccccc
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCG--------------------T------VEARS 111 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g--------------------~------~~~~~ 111 (515)
.+||+|||+||||..||..+ .|.+|+|||++ .+|++++..++.+- . .+...
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~--~g~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~ 78 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF--ADKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWPD 78 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH--CCCeEEEEeCC-CCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHHH
Confidence 58999999999999987554 69999999974 56776543332111 1 01000
Q ss_pred c--------ccchH----HH-H--hhcCceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcC
Q 010217 112 I--------VEPVR----NI-V--RKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARAN 176 (515)
Q Consensus 112 ~--------~~~~~----~~-~--~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~ 176 (515)
+ ...+. .. + ++.+++ ++.++...++ .++|.+.++. ++.||+||||||++|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g~~~~~~--~~~V~~~~g~----------~~~~d~lIiATGs~p~ 144 (452)
T TIGR03452 79 IVSRVFGDRIDPIAAGGEDYRRGDETPNID--VYDGHARFVG--PRTLRTGDGE----------EITGDQIVIAAGSRPY 144 (452)
T ss_pred HHHHhhhhHhHHHhccchHhhhhcccCCeE--EEEEEEEEec--CCEEEECCCc----------EEEeCEEEEEECCCCC
Confidence 1 11110 11 1 124555 5566666554 5577765322 7899999999999998
Q ss_pred CCCCCCCCCccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcc
Q 010217 177 TFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPK 256 (515)
Q Consensus 177 ~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~ 256 (515)
.|++++.. . ..+.+.+++..+.. .+++++|||+|++|+|+|..|.++
T Consensus 145 ~p~~~~~~-~-~~~~~~~~~~~l~~--------------------~~k~vvVIGgG~ig~E~A~~l~~~----------- 191 (452)
T TIGR03452 145 IPPAIADS-G-VRYHTNEDIMRLPE--------------------LPESLVIVGGGYIAAEFAHVFSAL----------- 191 (452)
T ss_pred CCCCCCCC-C-CEEEcHHHHHhhhh--------------------cCCcEEEECCCHHHHHHHHHHHhC-----------
Confidence 87654422 2 23455555544321 245999999999999999999875
Q ss_pred cCCCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEeC--CeEEEEecCCCceEEEecCeEEEccCCC
Q 010217 257 VKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIA 334 (515)
Q Consensus 257 ~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~~ 334 (515)
+.+|+++++.+.+++.+++++.+.+.+.++ .||++++++.+++++. +++.+.. .+|+ ++++|.|++|+|
T Consensus 192 ---G~~Vtli~~~~~ll~~~d~~~~~~l~~~~~-~gI~i~~~~~V~~i~~~~~~v~v~~-~~g~--~i~~D~vl~a~G-- 262 (452)
T TIGR03452 192 ---GTRVTIVNRSTKLLRHLDEDISDRFTEIAK-KKWDIRLGRNVTAVEQDGDGVTLTL-DDGS--TVTADVLLVATG-- 262 (452)
T ss_pred ---CCcEEEEEccCccccccCHHHHHHHHHHHh-cCCEEEeCCEEEEEEEcCCeEEEEE-cCCC--EEEcCEEEEeec--
Confidence 689999999999988899999888877554 6899999999999974 3454443 4565 499999999999
Q ss_pred CccchHHH-HHHhCC--CCCCceeeCCCccccCCCCEEEeccccccC
Q 010217 335 PHAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVN 378 (515)
Q Consensus 335 ~~p~~~~l-~~~~~~--~~~g~i~vd~~l~t~~~~~IyA~GD~~~~~ 378 (515)
..|++..+ ++.+++ +.+|+|.||+++|| +.|+|||+|||+..+
T Consensus 263 ~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~ 308 (452)
T TIGR03452 263 RVPNGDLLDAEAAGVEVDEDGRIKVDEYGRT-SARGVWALGDVSSPY 308 (452)
T ss_pred cCcCCCCcCchhcCeeECCCCcEeeCCCccc-CCCCEEEeecccCcc
Confidence 68887433 566676 57899999999997 999999999999854
No 57
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.97 E-value=1.4e-29 Score=276.30 Aligned_cols=281 Identities=20% Similarity=0.219 Sum_probs=192.3
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEE
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECF 135 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~ 135 (515)
...++|+|||||||||+||++|++.|++|+|||+++..++.... ..+....+.+.+....+++.+.|+++++ +.
T Consensus 535 ~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~--~IP~~rlp~e~l~~~ie~l~~~GVe~~~-g~--- 608 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN--IIPEFRISAESIQKDIELVKFHGVEFKY-GC--- 608 (1012)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee--cccccCCCHHHHHHHHHHHHhcCcEEEE-ec---
Confidence 45689999999999999999999999999999999887765311 1222222234444445667778877543 21
Q ss_pred EEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCc-CCCCCCCCCCccccccChhHHHHHHHHHHHHHHhcCCCC
Q 010217 136 KIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA-NTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPN 214 (515)
Q Consensus 136 ~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~-~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 214 (515)
+ ..+.+... ....||+||||||+++ ..+++||..+.+ +..++....+... +
T Consensus 609 --~---~d~~ve~l----------~~~gYDaVIIATGA~~~~~l~I~G~~~~v--~~avefL~~~~~~----------~- 660 (1012)
T TIGR03315 609 --S---PDLTVAEL----------KNQGYKYVILAIGAWKHGPLRLEGGGERV--LKSLEFLRAFKEG----------P- 660 (1012)
T ss_pred --c---cceEhhhh----------hcccccEEEECCCCCCCCCCCcCCCCcce--eeHHHHHHHhhcc----------c-
Confidence 1 11222221 1467999999999974 556788854332 2222222111100 0
Q ss_pred CCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCC-cEEEEEeccc-cccccccHHHHHHHHHHhhcCC
Q 010217 215 LSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDS-VKITLLEAAD-HILNMFDKRITAFAEEKFSRDG 292 (515)
Q Consensus 215 ~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~-~~Vtlv~~~~-~~l~~~~~~~~~~~~~~l~~~g 292 (515)
.....+++|+|||||++|+|+|..+.++ ++ .+|+++++++ ..++..+.++.+ . .+.|
T Consensus 661 ---~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl-------------~Ga~kVtLVyRr~~~~Mpa~~eEl~~----a-leeG 719 (1012)
T TIGR03315 661 ---TINPLGKHVVVVGGGNTAMDAARAALRV-------------PGVEKVTVVYRRTKRYMPASREELEE----A-LEDG 719 (1012)
T ss_pred ---cccccCCeEEEECCCHHHHHHHHHHHHh-------------CCCceEEEEEccCccccccCHHHHHH----H-HHcC
Confidence 0012578999999999999999988765 23 4899999876 345555544432 2 2479
Q ss_pred eEEEcCcEEEEEeCCeEEEEe--------------cCCCceEEEecCeEEEccCCCCccchHHHHHHhCC--CCCCceee
Q 010217 293 IDVKLGSMVVKVTDKEIFTKV--------------RGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--TNRRALAT 356 (515)
Q Consensus 293 V~v~~~~~v~~i~~~~v~~~~--------------~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~~~--~~~g~i~v 356 (515)
|+++++..+.++.++.+++.. ..+|+..+++||.||+|+| ..|+. .+++.+++ +.+|+|.|
T Consensus 720 Ve~~~~~~p~~I~~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG--~~Pnt-~lle~~GL~ld~~G~I~V 796 (1012)
T TIGR03315 720 VDFKELLSPESFEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVG--EQVDT-DLLQKNGIPLDEYGWPVV 796 (1012)
T ss_pred CEEEeCCceEEEECCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecC--CcCCh-HHHHhcCcccCCCCCEEe
Confidence 999999998888865544321 1246666799999999999 57777 56777776 67799999
Q ss_pred CCC-ccccCCCCEEEeccccccCccchHHHHHHHHHhhccC
Q 010217 357 DEW-LRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKADKD 396 (515)
Q Consensus 357 d~~-l~t~~~~~IyA~GD~~~~~~~~~~~~~~~~~~~a~~~ 396 (515)
|++ ++| +.|+|||+|||+..+. .+..++.++..+|..+
T Consensus 797 D~~~~~T-s~pgVFAaGD~a~GP~-tVv~AIaqGr~AA~nI 835 (1012)
T TIGR03315 797 NQATGET-NITNVFVIGDANRGPA-TIVEAIADGRKAANAI 835 (1012)
T ss_pred CCCCCcc-CCCCEEEEeCcCCCcc-HHHHHHHHHHHHHHHH
Confidence 987 787 9999999999997653 4777888877766543
No 58
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.97 E-value=4.5e-30 Score=266.94 Aligned_cols=283 Identities=18% Similarity=0.201 Sum_probs=189.5
Q ss_pred CCCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEE
Q 010217 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAEC 134 (515)
Q Consensus 55 ~~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v 134 (515)
....++|+||||||||+++|..|++.|++|+|+|+.+.+++.... .. +....+.++......++.+.+++++ .+..+
T Consensus 137 ~~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~-gi-p~~~~~~~~~~~~~~~l~~~gv~~~-~~~~v 213 (457)
T PRK11749 137 PKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRY-GI-PEFRLPKDIVDREVERLLKLGVEIR-TNTEV 213 (457)
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeec-cC-CCccCCHHHHHHHHHHHHHcCCEEE-eCCEE
Confidence 355789999999999999999999999999999999877653211 11 1112233555566677788887753 23322
Q ss_pred EEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCC-cCCCCCCCCC-CccccccChhHHHHHHHHHHHHHHhcCC
Q 010217 135 FKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR-ANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASL 212 (515)
Q Consensus 135 ~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~-~~~~~ipG~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 212 (515)
.+.+.+.+ ..+.||+||||||+. ++.+++||.+ .+++. +..+........ ..
T Consensus 214 ------~~~v~~~~-----------~~~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~------~~~~l~~~~~~~---~~ 267 (457)
T PRK11749 214 ------GRDITLDE-----------LRAGYDAVFIGTGAGLPRFLGIPGENLGGVYS------AVDFLTRVNQAV---AD 267 (457)
T ss_pred ------CCccCHHH-----------HHhhCCEEEEccCCCCCCCCCCCCccCCCcEE------HHHHHHHHhhcc---cc
Confidence 11222221 136799999999996 7778899875 22221 112211111000 00
Q ss_pred CCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccc-ccccccHHHHHHHHHHhhcC
Q 010217 213 PNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADH-ILNMFDKRITAFAEEKFSRD 291 (515)
Q Consensus 213 ~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~-~l~~~~~~~~~~~~~~l~~~ 291 (515)
. ....+++|+|||+|++|+|+|..+.+++ ..+|+++++.+. .++.... ..+.+++.
T Consensus 268 ~-----~~~~g~~VvViGgG~~g~e~A~~l~~~G-------------~~~Vtlv~~~~~~~~~~~~~-----~~~~~~~~ 324 (457)
T PRK11749 268 Y-----DLPVGKRVVVIGGGNTAMDAARTAKRLG-------------AESVTIVYRRGREEMPASEE-----EVEHAKEE 324 (457)
T ss_pred c-----cCCCCCeEEEECCCHHHHHHHHHHHHcC-------------CCeEEEeeecCcccCCCCHH-----HHHHHHHC
Confidence 0 0125679999999999999999998763 238999998764 3433222 24667889
Q ss_pred CeEEEcCcEEEEEeCCe-----EEEEec--------------CCCceEEEecCeEEEccCCCCccchHHHHH-HhCC--C
Q 010217 292 GIDVKLGSMVVKVTDKE-----IFTKVR--------------GNGETSSMPYGMVVWSTGIAPHAIIKDFMK-QVGQ--T 349 (515)
Q Consensus 292 gV~v~~~~~v~~i~~~~-----v~~~~~--------------~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~-~~~~--~ 349 (515)
||++++++.+.++.+++ +.+... .+|+..+++||.||||+| ..|+. .++. ..++ +
T Consensus 325 GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G--~~p~~-~l~~~~~gl~~~ 401 (457)
T PRK11749 325 GVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIG--QTPNP-LILSTTPGLELN 401 (457)
T ss_pred CCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECcc--CCCCc-hhhccccCccCC
Confidence 99999999999997543 544321 134445799999999999 56765 4433 3344 6
Q ss_pred CCCceeeCC-CccccCCCCEEEeccccccCccchHHHHHHHHHhhc
Q 010217 350 NRRALATDE-WLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKAD 394 (515)
Q Consensus 350 ~~g~i~vd~-~l~t~~~~~IyA~GD~~~~~~~~~~~~~~~~~~~a~ 394 (515)
.+|+|.||+ +++| +.|+|||+|||+.. ...+..++.++..+|.
T Consensus 402 ~~g~i~vd~~~~~T-s~~~VfA~GD~~~~-~~~~~~A~~~G~~aA~ 445 (457)
T PRK11749 402 RWGTIIADDETGRT-SLPGVFAGGDIVTG-AATVVWAVGDGKDAAE 445 (457)
T ss_pred CCCCEEeCCCCCcc-CCCCEEEeCCcCCC-chHHHHHHHHHHHHHH
Confidence 789999998 7887 99999999999964 3345666666665543
No 59
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.97 E-value=5.3e-30 Score=281.05 Aligned_cols=287 Identities=21% Similarity=0.184 Sum_probs=190.4
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEE
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECF 135 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~ 135 (515)
...++|+||||||||++||.+|++.|++|+|||+.+.+++... ... +....+.++.....+.+.++|++++. +..+
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~-~gi-p~~rlp~~~~~~~~~~l~~~gv~~~~-~~~v- 504 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK-YGI-PEFRLPKKIVDVEIENLKKLGVKFET-DVIV- 504 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee-ecC-CCCCCCHHHHHHHHHHHHHCCCEEEC-CCEE-
Confidence 4678999999999999999999999999999999877665421 111 11122334555555677888877532 3222
Q ss_pred EEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCC-CcCCCCCCCCC-CccccccChhHHHHHHHHHHHHHHhcCCC
Q 010217 136 KIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGA-RANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASLP 213 (515)
Q Consensus 136 ~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~-~~~~~~ipG~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 213 (515)
++.+++++. ....||+||||||+ .|+.+++||.+ .+++...+ +...... .....+
T Consensus 505 -----~~~v~~~~l----------~~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~~~------~l~~~~~--~~~~~~ 561 (752)
T PRK12778 505 -----GKTITIEEL----------EEEGFKGIFIASGAGLPNFMNIPGENSNGVMSSNE------YLTRVNL--MDAASP 561 (752)
T ss_pred -----CCcCCHHHH----------hhcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEHHH------HHHHHhh--cccccc
Confidence 233443321 15679999999999 58999999975 34433222 1111110 000000
Q ss_pred CCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcE-EEEEecccc-ccccccHHHHHHHHHHhhcC
Q 010217 214 NLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVK-ITLLEAADH-ILNMFDKRITAFAEEKFSRD 291 (515)
Q Consensus 214 ~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~-Vtlv~~~~~-~l~~~~~~~~~~~~~~l~~~ 291 (515)
..+.....+++|+|||||++|+|+|..+.++ +.+ |+++++++. .++....++ +.+++.
T Consensus 562 -~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~--------------Ga~~Vtlv~r~~~~~~~~~~~e~-----~~~~~~ 621 (752)
T PRK12778 562 -DSDTPIKFGKKVAVVGGGNTAMDSARTAKRL--------------GAERVTIVYRRSEEEMPARLEEV-----KHAKEE 621 (752)
T ss_pred -cccCcccCCCcEEEECCcHHHHHHHHHHHHc--------------CCCeEEEeeecCcccCCCCHHHH-----HHHHHc
Confidence 0000113578999999999999999999886 454 999998764 233322222 356788
Q ss_pred CeEEEcCcEEEEEeC---CeE---EEEec---------------CCCceEEEecCeEEEccCCCCccchHHHHHHh-CC-
Q 010217 292 GIDVKLGSMVVKVTD---KEI---FTKVR---------------GNGETSSMPYGMVVWSTGIAPHAIIKDFMKQV-GQ- 348 (515)
Q Consensus 292 gV~v~~~~~v~~i~~---~~v---~~~~~---------------~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~-~~- 348 (515)
||++++++.+.++.. +.+ .+... .+|+..+++||.||+|+| ..|+. .++... ++
T Consensus 622 GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G--~~p~~-~l~~~~~gl~ 698 (752)
T PRK12778 622 GIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVG--VSPNP-LVPSSIPGLE 698 (752)
T ss_pred CCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcC--CCCCc-cccccccCce
Confidence 999999999988853 222 22110 124445799999999999 46666 444432 44
Q ss_pred -CCCCceeeCCCccccCCCCEEEeccccccCccchHHHHHHHHHhhc
Q 010217 349 -TNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKAD 394 (515)
Q Consensus 349 -~~~g~i~vd~~l~t~~~~~IyA~GD~~~~~~~~~~~~~~~~~~~a~ 394 (515)
+.+|.|.||++++| +.|+|||+|||+..+ ..+..|+.++..+|.
T Consensus 699 ~~~~G~i~vd~~~~T-s~~gVfA~GD~~~g~-~~vv~Av~~G~~AA~ 743 (752)
T PRK12778 699 LNRKGTIVVDEEMQS-SIPGIYAGGDIVRGG-ATVILAMGDGKRAAA 743 (752)
T ss_pred ECCCCCEEeCCCCCC-CCCCEEEeCCccCCc-HHHHHHHHHHHHHHH
Confidence 67799999999998 999999999999864 346677777766554
No 60
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.97 E-value=5.9e-29 Score=267.53 Aligned_cols=279 Identities=18% Similarity=0.198 Sum_probs=186.9
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEE
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECF 135 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~ 135 (515)
...++|+||||||||+++|..|++.|++|+|||+.+.+++.. ....+....+.++.....+.+.+.|+++++ +. +.
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l--~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~-~~-~v 266 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMM--RYGIPRFRLPESVIDADIAPLRAMGAEFRF-NT-VF 266 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcee--eecCCCCCCCHHHHHHHHHHHHHcCCEEEe-CC-cc
Confidence 456899999999999999999999999999999998877642 111222223344555555667788877633 33 22
Q ss_pred EEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCc-CCCCCCCCC-CccccccChhHHHHHHHHHHHHHHhcCCC
Q 010217 136 KIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA-NTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASLP 213 (515)
Q Consensus 136 ~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~-~~~~ipG~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 213 (515)
.++ +.+.+. ...||+||||||+++ ..+++||.+ .+++. +..+..... ...
T Consensus 267 ~~d-----v~~~~~-----------~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~------~~~~l~~~~----~~~-- 318 (652)
T PRK12814 267 GRD-----ITLEEL-----------QKEFDAVLLAVGAQKASKMGIPGEELPGVIS------GIDFLRNVA----LGT-- 318 (652)
T ss_pred cCc-----cCHHHH-----------HhhcCEEEEEcCCCCCCCCCCCCcCcCCcEe------HHHHHHHhh----cCC--
Confidence 211 222110 235999999999985 567899965 22221 111111110 000
Q ss_pred CCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccc-ccccccHHHHHHHHHHhhcCC
Q 010217 214 NLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADH-ILNMFDKRITAFAEEKFSRDG 292 (515)
Q Consensus 214 ~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~-~l~~~~~~~~~~~~~~l~~~g 292 (515)
....+++|+|||+|++|+|+|..+.+++ ..+|+++++++. .++..+.++. + +.+.|
T Consensus 319 -----~~~~gk~VvVIGgG~~a~e~A~~l~~~G-------------a~~Vtlv~r~~~~~mpa~~~ei~----~-a~~eG 375 (652)
T PRK12814 319 -----ALHPGKKVVVIGGGNTAIDAARTALRLG-------------AESVTILYRRTREEMPANRAEIE----E-ALAEG 375 (652)
T ss_pred -----cccCCCeEEEECCCHHHHHHHHHHHHcC-------------CCeEEEeeecCcccCCCCHHHHH----H-HHHcC
Confidence 0135789999999999999999998863 247999998774 4555444332 2 23579
Q ss_pred eEEEcCcEEEEEeC--CeEEE--Eec---------------CCCceEEEecCeEEEccCCCCccchHHHHHHhCC--CCC
Q 010217 293 IDVKLGSMVVKVTD--KEIFT--KVR---------------GNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--TNR 351 (515)
Q Consensus 293 V~v~~~~~v~~i~~--~~v~~--~~~---------------~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~~~--~~~ 351 (515)
|++++++.+.++.. +++.+ ... .+|++.++++|.||+|+| +.|++ .+++..++ +.+
T Consensus 376 V~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG--~~p~~-~ll~~~gl~~~~~ 452 (652)
T PRK12814 376 VSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIG--QQVDP-PIAEAAGIGTSRN 452 (652)
T ss_pred CcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCC--CcCCc-ccccccCccccCC
Confidence 99999999988863 33221 110 134555799999999999 56776 56666666 567
Q ss_pred CceeeCC-CccccCCCCEEEeccccccCccchHHHHHHHHHhhc
Q 010217 352 RALATDE-WLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKAD 394 (515)
Q Consensus 352 g~i~vd~-~l~t~~~~~IyA~GD~~~~~~~~~~~~~~~~~~~a~ 394 (515)
|+|.||+ +++| +.|+|||+|||+..+. .+..|+.++..+|.
T Consensus 453 G~I~vd~~~~~T-s~pgVfA~GDv~~g~~-~v~~Ai~~G~~AA~ 494 (652)
T PRK12814 453 GTVKVDPETLQT-SVAGVFAGGDCVTGAD-IAINAVEQGKRAAH 494 (652)
T ss_pred CcEeeCCCCCcC-CCCCEEEcCCcCCCch-HHHHHHHHHHHHHH
Confidence 9999997 5776 9999999999997543 45667766665553
No 61
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.97 E-value=1e-28 Score=248.29 Aligned_cols=298 Identities=18% Similarity=0.183 Sum_probs=185.1
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEE
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECF 135 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~ 135 (515)
..+++|+|||+|++|+++|..|++.|++|+|||+.+.+++.... .........+.+ ......+.+.++++ +.+..+.
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~-~~~~~~~~~~~~-~~~~~~l~~~~i~~-~~~~~v~ 92 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLF-GIPEFRIPIERV-REGVKELEEAGVVF-HTRTKVC 92 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeee-cCcccccCHHHH-HHHHHHHHhCCeEE-ecCcEEe
Confidence 34689999999999999999999999999999998877653211 111111111222 22233445557665 2344454
Q ss_pred EEec----CCCEEEEeeCCccCCCCCceEEeecCEEEEccCC-CcCCCCCCCCCC-ccccccChhHHHHHHHHHHHHHHh
Q 010217 136 KIDA----ENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGA-RANTFNTPGVEE-NCNFLKEVEDAQRIRRNVIESFEK 209 (515)
Q Consensus 136 ~id~----~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~-~~~~~~ipG~~~-~~~~~~~~~~a~~~~~~~~~~~~~ 209 (515)
.++. ....+..... ..+...+.||+||||||+ .+..|++||.+. +++. ..+....+.... ...
T Consensus 93 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~--~~~~~~~~~~~~---~~~ 161 (352)
T PRK12770 93 CGEPLHEEEGDEFVERIV------SLEELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYS--ALEYLFRIRAAK---LGY 161 (352)
T ss_pred eccccccccccccccccC------CHHHHHhhCCEEEEEeCCCCCCcCCCCCccccCcee--HHHHHHHhhhcc---ccc
Confidence 4322 1111110000 000114789999999999 478889999753 2221 111111111100 000
Q ss_pred cCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcE-EEEEeccccccccccHHHHHHHHHHh
Q 010217 210 ASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVK-ITLLEAADHILNMFDKRITAFAEEKF 288 (515)
Q Consensus 210 ~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~-Vtlv~~~~~~l~~~~~~~~~~~~~~l 288 (515)
......+ ...+++++|||+|++|+|+|..|... +.+ |+++++.+...... .....+.|
T Consensus 162 ~~~~~~~---~~~g~~vvViG~G~~g~e~A~~l~~~--------------g~~~Vtvi~~~~~~~~~~----~~~~~~~l 220 (352)
T PRK12770 162 LPWEKVP---PVEGKKVVVVGAGLTAVDAALEAVLL--------------GAEKVYLAYRRTINEAPA----GKYEIERL 220 (352)
T ss_pred ccccccc---ccCCCEEEEECCCHHHHHHHHHHHHc--------------CCCeEEEEeecchhhCCC----CHHHHHHH
Confidence 0000001 12367999999999999999998765 454 99998865432111 13344668
Q ss_pred hcCCeEEEcCcEEEEEeCC-eE---EEEec---------------CCCceEEEecCeEEEccCCCCccchHHHHHH-hCC
Q 010217 289 SRDGIDVKLGSMVVKVTDK-EI---FTKVR---------------GNGETSSMPYGMVVWSTGIAPHAIIKDFMKQ-VGQ 348 (515)
Q Consensus 289 ~~~gV~v~~~~~v~~i~~~-~v---~~~~~---------------~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~-~~~ 348 (515)
+++||++++++.+.+++++ ++ .+... .+|+..+++||.||+++|+ .|+. .+..+ +++
T Consensus 221 ~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~--~p~~-~l~~~~~g~ 297 (352)
T PRK12770 221 IARGVEFLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGE--IPTP-PFAKECLGI 297 (352)
T ss_pred HHcCCEEeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECccc--CCCc-hhhhcccCc
Confidence 8999999999999998753 22 22111 1344457999999999995 6666 55554 665
Q ss_pred --CCCCceeeCCCccccCCCCEEEeccccccCccchHHHHHHHHHhh
Q 010217 349 --TNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKA 393 (515)
Q Consensus 349 --~~~g~i~vd~~l~t~~~~~IyA~GD~~~~~~~~~~~~~~~~~~~a 393 (515)
+.+|+|.||++++| +.|+|||+|||+..+. .+..++.++..++
T Consensus 298 ~~~~~g~i~vd~~~~t-~~~~vyaiGD~~~~~~-~~~~A~~~g~~aa 342 (352)
T PRK12770 298 ELNRKGEIVVDEKHMT-SREGVFAAGDVVTGPS-KIGKAIKSGLRAA 342 (352)
T ss_pred eecCCCcEeeCCCccc-CCCCEEEEcccccCcc-hHHHHHHHHHHHH
Confidence 56789999999998 8999999999998643 4555666655444
No 62
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.96 E-value=1.4e-28 Score=256.16 Aligned_cols=291 Identities=16% Similarity=0.200 Sum_probs=187.2
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEE
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECF 135 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~ 135 (515)
...++|+||||||||+++|..|++.|++|+|||+.+.+++.. .... +....+.++.....+++.++|+++. .+..+
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l-~~gi-p~~~~~~~~~~~~~~~~~~~gv~~~-~~~~v- 216 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLL-RYGI-PDFKLEKEVIDRRIELMEAEGIEFR-TNVEV- 216 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcee-eecC-CcccCCHHHHHHHHHHHHhCCcEEE-eCCEE-
Confidence 456899999999999999999999999999999998776532 1111 1111223444455567788887753 23332
Q ss_pred EEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCC-cCCCCCCCCC-CccccccChhHHHHHHHHHH-HHHHhcCC
Q 010217 136 KIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR-ANTFNTPGVE-ENCNFLKEVEDAQRIRRNVI-ESFEKASL 212 (515)
Q Consensus 136 ~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~-~~~~~ipG~~-~~~~~~~~~~~a~~~~~~~~-~~~~~~~~ 212 (515)
..+. ... .....||+||+|||+. ++.+++||.+ .++++. ..+..... ........
T Consensus 217 ~~~~-----~~~-----------~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~------~~~l~~~~~~~~~~~~~ 274 (471)
T PRK12810 217 GKDI-----TAE-----------ELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFA------MDFLIQNTRRVLGDETE 274 (471)
T ss_pred CCcC-----CHH-----------HHHhhCCEEEEecCCCCCCcCCCCCccCCCcEEH------HHHHHHHHhhhcccccc
Confidence 2211 111 0135799999999997 7788999975 333321 11111110 00000000
Q ss_pred CCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccccc-cH-----HHHHHHHH
Q 010217 213 PNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMF-DK-----RITAFAEE 286 (515)
Q Consensus 213 ~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~~-~~-----~~~~~~~~ 286 (515)
+.. ...+++|+|||+|++|+|+|..+.+.+ ..+|++++..+...... +. .......+
T Consensus 275 ~~~----~~~gk~VvVIGgG~~g~e~A~~~~~~g-------------a~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (471)
T PRK12810 275 PFI----SAKGKHVVVIGGGDTGMDCVGTAIRQG-------------AKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVS 337 (471)
T ss_pred ccc----cCCCCEEEEECCcHHHHHHHHHHHHcC-------------CCeEEEccccCCCccccccccCCcccchHHHHH
Confidence 000 125789999999999999999888763 24788766544322111 00 00111345
Q ss_pred HhhcCCeEEEcCcEEEEEeC--CeEE---EE--ec-------CCCceEEEecCeEEEccCCCCccchHHHHHHhCC--CC
Q 010217 287 KFSRDGIDVKLGSMVVKVTD--KEIF---TK--VR-------GNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--TN 350 (515)
Q Consensus 287 ~l~~~gV~v~~~~~v~~i~~--~~v~---~~--~~-------~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~~~--~~ 350 (515)
.+++.||++++++.+++|.+ +.++ +. .. ..|+..++++|.||+|+| ..|+...|++.+++ +.
T Consensus 338 ~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G--~~p~~~~l~~~~gl~~~~ 415 (471)
T PRK12810 338 NAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMG--FTGPEAGLLAQFGVELDE 415 (471)
T ss_pred HHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcC--cCCCchhhccccCcccCC
Confidence 67788999999999999973 3333 21 11 124455799999999999 46665457777776 66
Q ss_pred CCceeeC-CCccccCCCCEEEeccccccCccchHHHHHHHHHhh
Q 010217 351 RRALATD-EWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKA 393 (515)
Q Consensus 351 ~g~i~vd-~~l~t~~~~~IyA~GD~~~~~~~~~~~~~~~~~~~a 393 (515)
+|.|.|| ++++| +.|+|||+|||+..+ ..+..++.++..+|
T Consensus 416 ~g~i~vd~~~~~T-s~~gVfa~GD~~~g~-~~~~~Av~~G~~AA 457 (471)
T PRK12810 416 RGRVAAPDNAYQT-SNPKVFAAGDMRRGQ-SLVVWAIAEGRQAA 457 (471)
T ss_pred CCCEEeCCCcccC-CCCCEEEccccCCCc-hhHHHHHHHHHHHH
Confidence 7899998 78997 999999999999853 34556666666554
No 63
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.8e-29 Score=234.18 Aligned_cols=285 Identities=22% Similarity=0.337 Sum_probs=198.2
Q ss_pred CCCCCeEEEECCcHHHHHHHHhccCCCCeEEEEc---CCCC-----CccCCc----cchh------c----------cCc
Q 010217 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVIS---PRNY-----FAFTPL----LPSV------T----------CGT 106 (515)
Q Consensus 55 ~~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie---~~~~-----~~~~~~----~~~~------~----------~g~ 106 (515)
....+|++|||||.+||+||..++..|.+|.++| +.+. +|+++. +|.. . .|.
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW 95 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGW 95 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCC
Confidence 3457999999999999999999999999999998 2321 122211 1110 0 000
Q ss_pred -ccc-------cccccchHHHHhhcC--c-------eEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEE
Q 010217 107 -VEA-------RSIVEPVRNIVRKKN--V-------DICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVI 169 (515)
Q Consensus 107 -~~~-------~~~~~~~~~~~~~~~--i-------~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lvi 169 (515)
.+. +.+....++.++..+ - .+.++++..+.+|++ .+..... .+++..+.++.+||
T Consensus 96 ~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h--~I~at~~------~gk~~~~ta~~fvI 167 (503)
T KOG4716|consen 96 NVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPH--KIKATNK------KGKERFLTAENFVI 167 (503)
T ss_pred CCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccc--eEEEecC------CCceEEeecceEEE
Confidence 000 111122222222221 0 123445555555544 3333322 22466899999999
Q ss_pred ccCCCcCCCCCCCCCCccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHH
Q 010217 170 AMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDED 249 (515)
Q Consensus 170 AtG~~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~ 249 (515)
|||.+|+.|.|||..+..++.. +..++|..|. +-+|||+|++++|||..|+.+
T Consensus 168 atG~RPrYp~IpG~~Ey~ITSD----------------DlFsl~~~PG-------kTLvVGa~YVaLECAgFL~gf---- 220 (503)
T KOG4716|consen 168 ATGLRPRYPDIPGAKEYGITSD----------------DLFSLPYEPG-------KTLVVGAGYVALECAGFLKGF---- 220 (503)
T ss_pred EecCCCCCCCCCCceeeeeccc----------------ccccccCCCC-------ceEEEccceeeeehhhhHhhc----
Confidence 9999999999999877665432 2344554444 889999999999999999998
Q ss_pred HHhhCcccCCCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEe---CCe--EEEEecCCCceEEEec
Q 010217 250 LFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVT---DKE--IFTKVRGNGETSSMPY 324 (515)
Q Consensus 250 ~~~~~p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~---~~~--v~~~~~~~G~~~~i~~ 324 (515)
+.+||+..| +-+|..||.++++.+.+.|+++||+|...+.+.+|+ ++. |....+.+++..+-++
T Consensus 221 ----------g~~vtVmVR-SI~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~y 289 (503)
T KOG4716|consen 221 ----------GYDVTVMVR-SILLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEY 289 (503)
T ss_pred ----------CCCcEEEEE-EeecccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcEEEEeecccccccccchh
Confidence 578998877 457889999999999999999999999987776665 344 3334444555555779
Q ss_pred CeEEEccCCCCccchHHH-HHHhCC---CCCCceeeCCCccccCCCCEEEeccccccCccchHHHHHH
Q 010217 325 GMVVWSTGIAPHAIIKDF-MKQVGQ---TNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAA 388 (515)
Q Consensus 325 D~vi~a~G~~~~p~~~~l-~~~~~~---~~~g~i~vd~~l~t~~~~~IyA~GD~~~~~~~~~~~~~~~ 388 (515)
|.|+||+| +.++++++ ++..|+ ...|.|.||+.-+| |+|+|||+||+....+....-++.+
T Consensus 290 dTVl~AiG--R~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t-~vp~vyAvGDIl~~kpELTPvAIqs 354 (503)
T KOG4716|consen 290 DTVLWAIG--RKALTDDLNLDNAGVKTNEKSGKIPVDDEEAT-NVPYVYAVGDILEDKPELTPVAIQS 354 (503)
T ss_pred hhhhhhhc--cccchhhcCCCccceeecccCCccccChHHhc-CCCceEEecceecCCcccchhhhhh
Confidence 99999999 78888777 677777 25689999999998 9999999999998655444344433
No 64
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.2e-29 Score=232.52 Aligned_cols=282 Identities=20% Similarity=0.256 Sum_probs=210.2
Q ss_pred CCCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhc-----cCcccccccccchHHHHhhcCceEEE
Q 010217 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVT-----CGTVEARSIVEPVRNIVRKKNVDICF 129 (515)
Q Consensus 55 ~~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~i~v~~ 129 (515)
....++|+||||||||-+||.+.+++|.+.-|+-.+ ||++.+-.... .-..+...+...++...+.|.+++ .
T Consensus 208 ~k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aer--fGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDi-m 284 (520)
T COG3634 208 AKDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAER--FGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDV-M 284 (520)
T ss_pred ccCCceEEEEcCCcchhHHHHHHHhhcchhhhhhhh--hCCeeccccchhheeccccccchHHHHHHHHHHhhcCchh-h
Confidence 345799999999999999999999999998777643 77765322111 111222356666778888888775 2
Q ss_pred EEeEEEEEecC-----CCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCCCCCCCCccccccChhHHHHHHHHHH
Q 010217 130 WEAECFKIDAE-----NKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVI 204 (515)
Q Consensus 130 ~~~~v~~id~~-----~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~ 204 (515)
.--+++.+.+. ...|++.++. .+..+.+|||||++.+..++||.+++.. +.+.
T Consensus 285 n~qra~~l~~a~~~~~l~ev~l~nGa----------vLkaktvIlstGArWRn~nvPGE~e~rn------------KGVa 342 (520)
T COG3634 285 NLQRASKLEPAAVEGGLIEVELANGA----------VLKARTVILATGARWRNMNVPGEDEYRN------------KGVA 342 (520)
T ss_pred hhhhhhcceecCCCCccEEEEecCCc----------eeccceEEEecCcchhcCCCCchHHHhh------------CCee
Confidence 23356666653 2256666654 8999999999999999999999864210 0011
Q ss_pred HHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccccccHHHHHHH
Q 010217 205 ESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFA 284 (515)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~ 284 (515)
+| .-++.+.+++|+|+|||||++|+|.|..|+... .+||+++-.+.+ ...+.+
T Consensus 343 yC-------PHCDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv--------------~hVtllEF~~eL------kAD~VL 395 (520)
T COG3634 343 YC-------PHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIV--------------EHVTLLEFAPEL------KADAVL 395 (520)
T ss_pred eC-------CCCCCcccCCceEEEECCCcchHHHHHhHHhhh--------------heeeeeecchhh------hhHHHH
Confidence 11 112344578999999999999999999999864 589999876654 234455
Q ss_pred HHHhhc-CCeEEEcCcEEEEEeCC-----eEEEEecCCCceEEEecCeEEEccCCCCccchHHHHHHhCCCCCCceeeCC
Q 010217 285 EEKFSR-DGIDVKLGSMVVKVTDK-----EIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDE 358 (515)
Q Consensus 285 ~~~l~~-~gV~v~~~~~v~~i~~~-----~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~~~~~~g~i~vd~ 358 (515)
++.++. .+|+++++...++|.++ ++.+.+..+|+...++-+-|++-+| -.||+++|-....++++|.|+||.
T Consensus 396 q~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIG--L~PNT~WLkg~vel~~rGEIivD~ 473 (520)
T COG3634 396 QDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIG--LLPNTEWLKGAVELNRRGEIIVDA 473 (520)
T ss_pred HHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCceeEEEeeeeEEEEe--cccChhHhhchhhcCcCccEEEec
Confidence 666654 59999999999999875 3677777889888899999999999 589995444445668999999999
Q ss_pred CccccCCCCEEEeccccccCccchHHHHHHHHH
Q 010217 359 WLRVEGSDSIYALGDCATVNQRRVMEDIAAIFS 391 (515)
Q Consensus 359 ~l~t~~~~~IyA~GD~~~~~~~~~~~~~~~~~~ 391 (515)
+..| |+|+|||+|||+..+..++.-++.++..
T Consensus 474 ~g~T-svpGvFAAGD~T~~~yKQIIIamG~GA~ 505 (520)
T COG3634 474 RGET-NVPGVFAAGDCTTVPYKQIIIAMGEGAK 505 (520)
T ss_pred CCCc-CCCceeecCcccCCccceEEEEecCcch
Confidence 9998 9999999999999988877666655443
No 65
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.96 E-value=1.5e-28 Score=273.55 Aligned_cols=290 Identities=16% Similarity=0.121 Sum_probs=190.5
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEE
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECF 135 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~ 135 (515)
.+.++|+|||||||||+||.+|++.|++|+|||+.+..++.. ....+....+.+++....+.+.+.|+++++ + .+.
T Consensus 428 ~~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l--~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~-~-~~v 503 (1006)
T PRK12775 428 KKLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVL--QYGIPSFRLPRDIIDREVQRLVDIGVKIET-N-KVI 503 (1006)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCccee--eccCCccCCCHHHHHHHHHHHHHCCCEEEe-C-Ccc
Confidence 356899999999999999999999999999999988776532 111222223446666777788889987632 3 222
Q ss_pred EEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCC-cCCCCCCCCC-CccccccChhHHHHHHHHHHHHHHhcCCC
Q 010217 136 KIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR-ANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASLP 213 (515)
Q Consensus 136 ~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~-~~~~~ipG~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 213 (515)
++.+++.+.. ....||+||||||+. |+.++|||.+ .+++... .+...+.. ......+
T Consensus 504 -----g~~~~~~~l~---------~~~~yDaViIATGa~~pr~l~IpG~~l~gV~~a~------~fL~~~~~-~~~~~~~ 562 (1006)
T PRK12775 504 -----GKTFTVPQLM---------NDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSAN------EFLTRVNL-MGGDKFP 562 (1006)
T ss_pred -----CCccCHHHHh---------hccCCCEEEEecCCCCCCCCCCCCcCCCCcEEHH------HHHHHHHh-cCccccc
Confidence 2223332210 034699999999995 8999999975 3443322 22222110 0000000
Q ss_pred CCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccc-cccccHHHHHHHHHHhhcCC
Q 010217 214 NLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHI-LNMFDKRITAFAEEKFSRDG 292 (515)
Q Consensus 214 ~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~-l~~~~~~~~~~~~~~l~~~g 292 (515)
..+.....+++|+|||||++|+++|..+.+++ ...|+++++.... ++....+ .+.+++.|
T Consensus 563 -~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlG-------------a~~Vtiv~rr~~~em~a~~~e-----~~~a~eeG 623 (1006)
T PRK12775 563 -FLDTPISLGKSVVVIGAGNTAMDCLRVAKRLG-------------APTVRCVYRRSEAEAPARIEE-----IRHAKEEG 623 (1006)
T ss_pred -cccCCccCCCEEEEECCcHHHHHHHHHHHHcC-------------CCEEEEEeecCcccCCCCHHH-----HHHHHhCC
Confidence 00111135789999999999999999998874 2368888876432 2222111 24567889
Q ss_pred eEEEcCcEEEEEeC---CeE---EEEec--------------CCCceEEEecCeEEEccCCCCccchHHHHHH-hCC--C
Q 010217 293 IDVKLGSMVVKVTD---KEI---FTKVR--------------GNGETSSMPYGMVVWSTGIAPHAIIKDFMKQ-VGQ--T 349 (515)
Q Consensus 293 V~v~~~~~v~~i~~---~~v---~~~~~--------------~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~-~~~--~ 349 (515)
|++++++.+.++.. +.+ .+... .+|+..+++||.||+|+| +.|++ .++.. .++ +
T Consensus 624 I~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG--~~p~~-~~~~~~~gl~l~ 700 (1006)
T PRK12775 624 IDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALG--TKANP-IITQSTPGLALN 700 (1006)
T ss_pred CEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCC--cCCCh-hhhhccCCcccC
Confidence 99999999999852 222 22210 124445799999999999 56776 34433 244 6
Q ss_pred CCCceeeCC-----CccccCCCCEEEeccccccCccchHHHHHHHHHhhc
Q 010217 350 NRRALATDE-----WLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKAD 394 (515)
Q Consensus 350 ~~g~i~vd~-----~l~t~~~~~IyA~GD~~~~~~~~~~~~~~~~~~~a~ 394 (515)
.+|.|.||+ +++| |+|+|||+|||+..+. .+..++.++..+|.
T Consensus 701 ~~G~I~vd~~~v~~~~~T-s~pgVFAaGDv~~G~~-~vv~Ai~~Gr~AA~ 748 (1006)
T PRK12775 701 KWGNIAADDGKLESTQST-NLPGVFAGGDIVTGGA-TVILAMGAGRRAAR 748 (1006)
T ss_pred CCCcEEeCCCccccCcCC-CCCCEEEecCcCCCcc-HHHHHHHHHHHHHH
Confidence 788999996 6887 9999999999998643 46677777766554
No 66
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.96 E-value=3.1e-28 Score=249.70 Aligned_cols=310 Identities=15% Similarity=0.148 Sum_probs=190.9
Q ss_pred CCCCCeEEEECCcHHHHHHHHhccC--CCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEe
Q 010217 55 GIKKKKVVVLGTGWAGTSFLKNLNN--PSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEA 132 (515)
Q Consensus 55 ~~~~~~VvIIGgG~AGlsaA~~L~~--~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~ 132 (515)
..++++|+|||||||||+||..|++ .|++|+|||+.+..++. +...+.+.....+.+...+..++...++++ +.+.
T Consensus 23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGl-vr~gvaP~~~~~k~v~~~~~~~~~~~~v~~-~~nv 100 (491)
T PLN02852 23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGL-VRSGVAPDHPETKNVTNQFSRVATDDRVSF-FGNV 100 (491)
T ss_pred CCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcce-EeeccCCCcchhHHHHHHHHHHHHHCCeEE-EcCE
Confidence 3457899999999999999999985 79999999999877653 222333343344455566667777777553 2222
Q ss_pred EEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCc-CCCCCCCCC-CccccccChhHHHHHHHHHHHHHHhc
Q 010217 133 ECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA-NTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKA 210 (515)
Q Consensus 133 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~-~~~~ipG~~-~~~~~~~~~~~a~~~~~~~~~~~~~~ 210 (515)
.+ ++.+++++. ...||+||||||+.+ +.+++||.+ .+++.. ..+...+....+..
T Consensus 101 ~v------g~dvtl~~L-----------~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a------~~fl~~~ng~~d~~ 157 (491)
T PLN02852 101 TL------GRDVSLSEL-----------RDLYHVVVLAYGAESDRRLGIPGEDLPGVLSA------REFVWWYNGHPDCV 157 (491)
T ss_pred EE------CccccHHHH-----------hhhCCEEEEecCCCCCCCCCCCCCCCCCeEEH------HHHHHHhhcchhhh
Confidence 22 233444321 347999999999986 788999975 344432 22211111000000
Q ss_pred CCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHH----HHHhh-CcccC--CCcEEEEEeccccccccc-cHHH--
Q 010217 211 SLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDE----DLFKL-YPKVK--DSVKITLLEAADHILNMF-DKRI-- 280 (515)
Q Consensus 211 ~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~----~~~~~-~p~~~--~~~~Vtlv~~~~~~l~~~-~~~~-- 280 (515)
.+.. ....+++|+|||+|++|+|+|..|.+...+ |+... +..++ .-.+|+++.|+...-..| ..++
T Consensus 158 ~~~~----~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elre 233 (491)
T PLN02852 158 HLPP----DLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRE 233 (491)
T ss_pred hhhh----cccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHH
Confidence 0000 012568999999999999999998765211 11000 00011 124799999887421111 1111
Q ss_pred -----------------------------------HHHHHHHhhc---------CCeEEEcCcEEEEEeC-----Ce---
Q 010217 281 -----------------------------------TAFAEEKFSR---------DGIDVKLGSMVVKVTD-----KE--- 308 (515)
Q Consensus 281 -----------------------------------~~~~~~~l~~---------~gV~v~~~~~v~~i~~-----~~--- 308 (515)
.+.+.+...+ ++|.|++...+++|.. +.
T Consensus 234 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~ 313 (491)
T PLN02852 234 LLGLKNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAG 313 (491)
T ss_pred HhccCCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEE
Confidence 1122222222 5899999999999962 22
Q ss_pred EEEEec--------------CCCceEEEecCeEEEccCCCCccchHH-HHHHhCC--CCCCceeeCCCccccCCCCEEEe
Q 010217 309 IFTKVR--------------GNGETSSMPYGMVVWSTGIAPHAIIKD-FMKQVGQ--TNRRALATDEWLRVEGSDSIYAL 371 (515)
Q Consensus 309 v~~~~~--------------~~G~~~~i~~D~vi~a~G~~~~p~~~~-l~~~~~~--~~~g~i~vd~~l~t~~~~~IyA~ 371 (515)
+++... .+|+..+++||.||.|+|+...|.... |....++ +.+|+|.+|+.++| ++|+|||+
T Consensus 314 l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T-~ipGvyAa 392 (491)
T PLN02852 314 VKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGAD-TEPGLYVV 392 (491)
T ss_pred EEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCcc-CCCCEEEe
Confidence 333211 146667899999999999765565521 2222344 67899999988887 89999999
Q ss_pred ccccccCccchHHHHHHHHHhhc
Q 010217 372 GDCATVNQRRVMEDIAAIFSKAD 394 (515)
Q Consensus 372 GD~~~~~~~~~~~~~~~~~~~a~ 394 (515)
|||...+...+..++.....++.
T Consensus 393 GDi~~Gp~gvI~t~~~dA~~ta~ 415 (491)
T PLN02852 393 GWLKRGPTGIIGTNLTCAEETVA 415 (491)
T ss_pred eeEecCCCCeeeecHhhHHHHHH
Confidence 99999887766666666554443
No 67
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.96 E-value=1.4e-27 Score=247.79 Aligned_cols=290 Identities=14% Similarity=0.135 Sum_probs=189.5
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEE
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECF 135 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~ 135 (515)
.+.++|+||||||||++||..|++.|++|+|+|+.+.+++... ... +......++.....+++.+.|++++ .+..+.
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~-~gi-p~~~~~~~~~~~~~~~~~~~Gv~~~-~~~~v~ 215 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT-FGI-PSFKLDKAVLSRRREIFTAMGIEFH-LNCEVG 215 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee-ecC-ccccCCHHHHHHHHHHHHHCCCEEE-CCCEeC
Confidence 3568999999999999999999999999999999988776421 111 2222233555556677888898763 344441
Q ss_pred EEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCc-CCCCCCCCC-CccccccChhHHHHHHHHHH-HHHHhcCC
Q 010217 136 KIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA-NTFNTPGVE-ENCNFLKEVEDAQRIRRNVI-ESFEKASL 212 (515)
Q Consensus 136 ~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~-~~~~ipG~~-~~~~~~~~~~~a~~~~~~~~-~~~~~~~~ 212 (515)
+.+.+.+ ....||+||+|||+.+ ..+++||.+ ++++.. ..+..... ........
T Consensus 216 ------~~~~~~~-----------~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a------~~~l~~~~~~~~~~~~~ 272 (467)
T TIGR01318 216 ------RDISLDD-----------LLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQA------LPFLIANTRQLMGLPES 272 (467)
T ss_pred ------CccCHHH-----------HHhcCCEEEEEeCCCCCCcCCCCCcCCCCcEEH------HHHHHHHHHHhcCCCcc
Confidence 1122211 1347999999999987 457899976 333321 11111100 00000000
Q ss_pred CCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccc-ccccccHHHHHHHHHHhhcC
Q 010217 213 PNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADH-ILNMFDKRITAFAEEKFSRD 291 (515)
Q Consensus 213 ~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~-~l~~~~~~~~~~~~~~l~~~ 291 (515)
+..+. ....+++++|||+|++|+++|..+.+++ ..+||++++++. .++..+.++ +.+++.
T Consensus 273 ~~~~~-~~~~gk~VvVIGgG~~a~d~A~~a~~~G-------------a~~Vtvv~r~~~~~~~~~~~e~-----~~~~~~ 333 (467)
T TIGR01318 273 PEEPL-IDVEGKRVVVLGGGDTAMDCVRTAIRLG-------------AASVTCAYRRDEANMPGSRREV-----ANAREE 333 (467)
T ss_pred ccccc-cccCCCEEEEECCcHHHHHHHHHHHHcC-------------CCeEEEEEecCcccCCCCHHHH-----HHHHhc
Confidence 00000 0124689999999999999999988763 247999998775 355444333 446778
Q ss_pred CeEEEcCcEEEEEeC---CeE---EEEec---------------CCCceEEEecCeEEEccCCCCccchHHHHHHhCC--
Q 010217 292 GIDVKLGSMVVKVTD---KEI---FTKVR---------------GNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ-- 348 (515)
Q Consensus 292 gV~v~~~~~v~~i~~---~~v---~~~~~---------------~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~~~-- 348 (515)
||++++++.+.++.. +.+ ++... .+|+..+++||.||+|+|+ .|+...+++..++
T Consensus 334 GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~--~p~~~~~~~~~gl~~ 411 (467)
T TIGR01318 334 GVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGF--QPHAMPWLAGHGITL 411 (467)
T ss_pred CCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcC--CCCccccccccCccC
Confidence 999999999999853 223 22211 1244557999999999994 6654345555555
Q ss_pred CCCCceeeC----CCccccCCCCEEEeccccccCccchHHHHHHHHHhhc
Q 010217 349 TNRRALATD----EWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKAD 394 (515)
Q Consensus 349 ~~~g~i~vd----~~l~t~~~~~IyA~GD~~~~~~~~~~~~~~~~~~~a~ 394 (515)
+.+|+|.|| .+++| +.|+|||+|||+..+. .+..++.++..+|.
T Consensus 412 ~~~g~i~vd~~~~~~~~T-~~~gVfa~GD~~~~~~-~~~~Ai~~G~~aA~ 459 (467)
T TIGR01318 412 DSWGRIITGDVSYLPYQT-TNPKIFAGGDAVRGAD-LVVTAVAEGRQAAQ 459 (467)
T ss_pred CCCCCEEeCCccccCccC-CCCCEEEECCcCCCcc-HHHHHHHHHHHHHH
Confidence 667899999 67887 8999999999997543 34566666665543
No 68
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.96 E-value=9.5e-28 Score=259.36 Aligned_cols=291 Identities=16% Similarity=0.156 Sum_probs=189.5
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEE
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECF 135 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~ 135 (515)
.+.++|+|||||||||+||..|++.|++|+|||+.+.+++... .. .+....++++.....+++.+.|++++ .+..+.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~-~g-ip~~~l~~~~~~~~~~~~~~~Gv~~~-~~~~v~ 401 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLT-FG-IPAFKLDKSLLARRREIFSAMGIEFE-LNCEVG 401 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceee-ec-CCCccCCHHHHHHHHHHHHHCCeEEE-CCCEeC
Confidence 3578999999999999999999999999999999988776421 12 22222233455555667788887753 233331
Q ss_pred EEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCc-CCCCCCCCC-CccccccChhHHHHHHHHHHHHHHhcCCC
Q 010217 136 KIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA-NTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASLP 213 (515)
Q Consensus 136 ~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~-~~~~ipG~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 213 (515)
..+.+.+ ....||+|++|||+.. ..+++||.+ .+++.. .+... ......+......
T Consensus 402 ------~~i~~~~-----------~~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a--~~~l~---~~~~~~~~~~~~~ 459 (654)
T PRK12769 402 ------KDISLES-----------LLEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDA--LPFLI---ANTKQVMGLEELP 459 (654)
T ss_pred ------CcCCHHH-----------HHhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEh--HHHHH---HHHhhhccCcccc
Confidence 1122211 0246999999999864 567888875 333221 11110 1100110000000
Q ss_pred CCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccc-cccccHHHHHHHHHHhhcCC
Q 010217 214 NLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHI-LNMFDKRITAFAEEKFSRDG 292 (515)
Q Consensus 214 ~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~-l~~~~~~~~~~~~~~l~~~g 292 (515)
..+ .....+++|+|||||++|+++|..+.+++ ..+|+++++++.. ++..+.+ .+.+++.|
T Consensus 460 ~~~-~~~~~gk~VvVIGgG~~a~d~A~~a~r~g-------------a~~Vt~i~~~~~~~~~~~~~e-----~~~~~~~G 520 (654)
T PRK12769 460 EEP-FINTAGLNVVVLGGGDTAMDCVRTALRHG-------------ASNVTCAYRRDEANMPGSKKE-----VKNAREEG 520 (654)
T ss_pred ccc-cccCCCCeEEEECCcHHHHHHHHHHHHcC-------------CCeEEEeEecCCCCCCCCHHH-----HHHHHHcC
Confidence 000 00125689999999999999999888763 2479999987654 4444332 35577899
Q ss_pred eEEEcCcEEEEEeC---CeE---EEEec------C---------CCceEEEecCeEEEccCCCCccchHHHHHHhCC--C
Q 010217 293 IDVKLGSMVVKVTD---KEI---FTKVR------G---------NGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--T 349 (515)
Q Consensus 293 V~v~~~~~v~~i~~---~~v---~~~~~------~---------~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~~~--~ 349 (515)
|++++++.++++.. +.+ .+... . .|++.++++|.||+|+|+ .|+...+++.+++ +
T Consensus 521 v~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~--~p~~~~~~~~~gl~~~ 598 (654)
T PRK12769 521 ANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGF--NPHGMPWLESHGVTVD 598 (654)
T ss_pred CeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccC--CCCccccccccCCcCC
Confidence 99999999999852 233 32211 1 244557999999999994 6654345666666 6
Q ss_pred CCCceeeCC----CccccCCCCEEEeccccccCccchHHHHHHHHHhhc
Q 010217 350 NRRALATDE----WLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKAD 394 (515)
Q Consensus 350 ~~g~i~vd~----~l~t~~~~~IyA~GD~~~~~~~~~~~~~~~~~~~a~ 394 (515)
.+|.|.||+ +++| +.|+|||+|||+..+ ..+..|+.++..+|.
T Consensus 599 ~~G~i~vd~~~~~~~~T-s~~gVfAaGD~~~g~-~~vv~Ai~~Gr~AA~ 645 (654)
T PRK12769 599 KWGRIIADVESQYRYQT-SNPKIFAGGDAVRGA-DLVVTAMAEGRHAAQ 645 (654)
T ss_pred CCCCEEeCCCcccCccc-CCCCEEEcCCcCCCC-cHHHHHHHHHHHHHH
Confidence 789999986 4788 999999999999754 346677777776554
No 69
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.1e-27 Score=210.19 Aligned_cols=286 Identities=16% Similarity=0.195 Sum_probs=213.8
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCC----CccCC-------ccchhccCcccccccccchHHHHhhcCce
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY----FAFTP-------LLPSVTCGTVEARSIVEPVRNIVRKKNVD 126 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~----~~~~~-------~~~~~~~g~~~~~~~~~~~~~~~~~~~i~ 126 (515)
..+|+|||+|||+.+||+++++...+-+|+|-.-. .+++. .+|+++-|. ...++.+.++++..+.|.+
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi-~G~~l~d~mrkqs~r~Gt~ 86 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGI-TGPELMDKMRKQSERFGTE 86 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCccc-ccHHHHHHHHHHHHhhcce
Confidence 45899999999999999999999999999994311 12211 123333222 2237788889999999966
Q ss_pred EEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCCCCCCCCccccccChhHHHHHHHHHHHH
Q 010217 127 ICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIES 206 (515)
Q Consensus 127 v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~ 206 (515)
++..+|.++|...+-+.+.+.. ..+.+|.+|+|||+..+.+.+||..+.-++- +.+..|
T Consensus 87 --i~tEtVskv~~sskpF~l~td~---------~~v~~~avI~atGAsAkRl~~pg~ge~~fWq----------rGiSaC 145 (322)
T KOG0404|consen 87 --IITETVSKVDLSSKPFKLWTDA---------RPVTADAVILATGASAKRLHLPGEGEGEFWQ----------RGISAC 145 (322)
T ss_pred --eeeeehhhccccCCCeEEEecC---------CceeeeeEEEecccceeeeecCCCCcchHHh----------cccchh
Confidence 5677899999999877776532 2789999999999999988899874432222 223333
Q ss_pred HHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccccccHHHHHHH-H
Q 010217 207 FEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFA-E 285 (515)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~-~ 285 (515)
.-|...- ...+.|-.+|||||.+++|-|..|..+ +.+|++++|++++. .+..+ +
T Consensus 146 AVCDGaa-----pifrnk~laVIGGGDsA~EEA~fLtky--------------askVyii~Rrd~fR------As~~Mq~ 200 (322)
T KOG0404|consen 146 AVCDGAA-----PIFRNKPLAVIGGGDSAMEEALFLTKY--------------ASKVYIIHRRDHFR------ASKIMQQ 200 (322)
T ss_pred hcccCcc-----hhhcCCeeEEEcCcHHHHHHHHHHHhh--------------ccEEEEEEEhhhhh------HHHHHHH
Confidence 2221111 125778999999999999999999998 57999999998763 33333 4
Q ss_pred HHhhcCCeEEEcCcEEEEEeCC-----eEEEEecCCCceEEEecCeEEEccCCCCccchHHHHHHhCCCCCCceeeCCC-
Q 010217 286 EKFSRDGIDVKLGSMVVKVTDK-----EIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEW- 359 (515)
Q Consensus 286 ~~l~~~gV~v~~~~~v~~i~~~-----~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~~~~~~g~i~vd~~- 359 (515)
+..+..+|++++++.+.+..++ ++.+.+..+|+...++++-++.++| ..|+++-+-.+..++.+|+|++-+.
T Consensus 201 ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IG--H~Pat~~l~gqve~d~~GYi~t~pgt 278 (322)
T KOG0404|consen 201 RAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIG--HSPATKFLKGQVELDEDGYIVTRPGT 278 (322)
T ss_pred HHhcCCCeEEEechhhhhhccCcccccceEEEecccCcccccccceeEEEec--CCchhhHhcCceeeccCceEEeccCc
Confidence 4556679999999998888765 4677777788888899999999999 6899844444556689999998754
Q ss_pred ccccCCCCEEEeccccccCccchHHHHHHHHHhh
Q 010217 360 LRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKA 393 (515)
Q Consensus 360 l~t~~~~~IyA~GD~~~~~~~~~~~~~~~~~~~a 393 (515)
-.| |+|++||+||+.....++..+++..++.++
T Consensus 279 s~T-svpG~FAAGDVqD~kyRQAvTaAgsGciaa 311 (322)
T KOG0404|consen 279 SLT-SVPGVFAAGDVQDKKYRQAVTAAGSGCIAA 311 (322)
T ss_pred ccc-cccceeeccccchHHHHHHHhhhccchhhh
Confidence 555 999999999999988888888877766544
No 70
>PRK13984 putative oxidoreductase; Provisional
Probab=99.95 E-value=9.2e-27 Score=250.28 Aligned_cols=290 Identities=16% Similarity=0.158 Sum_probs=183.3
Q ss_pred CCCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEE
Q 010217 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAEC 134 (515)
Q Consensus 55 ~~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v 134 (515)
..+.++|+|||+|+||+++|..|++.|++|+|+|+.+..++... .. .+....+.++.....+.+++.|++++ .+..|
T Consensus 280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~-~~-i~~~~~~~~~~~~~~~~~~~~gv~~~-~~~~v 356 (604)
T PRK13984 280 EKKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR-YG-IPSYRLPDEALDKDIAFIEALGVKIH-LNTRV 356 (604)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe-ec-CCcccCCHHHHHHHHHHHHHCCcEEE-CCCEe
Confidence 34578999999999999999999999999999999887765321 11 11111223444445567788887753 34443
Q ss_pred EEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCC-cCCCCCCCCCC-ccccccChhHHHHHHHHHHHHHHhcCC
Q 010217 135 FKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR-ANTFNTPGVEE-NCNFLKEVEDAQRIRRNVIESFEKASL 212 (515)
Q Consensus 135 ~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~-~~~~~ipG~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~ 212 (515)
. . .+.... ....||+||||||+. ++.+++||.+. +++ ...+.. ..+...+.....
T Consensus 357 ~-~-----~~~~~~-----------~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~--~a~~~l----~~~~~~~~~~~~ 413 (604)
T PRK13984 357 G-K-----DIPLEE-----------LREKHDAVFLSTGFTLGRSTRIPGTDHPDVI--QALPLL----REIRDYLRGEGP 413 (604)
T ss_pred C-C-----cCCHHH-----------HHhcCCEEEEEcCcCCCccCCCCCcCCcCeE--eHHHHH----HHHHhhhccCCC
Confidence 1 1 111111 145799999999997 58889999752 322 222222 222211111000
Q ss_pred CCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecc--ccccccccHHHHHHHHHHhhc
Q 010217 213 PNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAA--DHILNMFDKRITAFAEEKFSR 290 (515)
Q Consensus 213 ~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~--~~~l~~~~~~~~~~~~~~l~~ 290 (515)
....+++|+|||||++|+|+|..+.+++... + ...+|+++... ...++....++ .+ +.+
T Consensus 414 ------~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~----~----g~~~V~v~~~~r~~~~~~~~~~e~----~~-~~~ 474 (604)
T PRK13984 414 ------KPKIPRSLVVIGGGNVAMDIARSMARLQKME----Y----GEVNVKVTSLERTFEEMPADMEEI----EE-GLE 474 (604)
T ss_pred ------cCCCCCcEEEECCchHHHHHHHHHHhccccc----c----CceEEEEeccccCcccCCCCHHHH----HH-HHH
Confidence 0013579999999999999999998763100 0 12467776432 22233322222 22 345
Q ss_pred CCeEEEcCcEEEEEeC--CeEE---EEe-----cC---------CCceEEEecCeEEEccCCCCccchHHHHHHhC--C-
Q 010217 291 DGIDVKLGSMVVKVTD--KEIF---TKV-----RG---------NGETSSMPYGMVVWSTGIAPHAIIKDFMKQVG--Q- 348 (515)
Q Consensus 291 ~gV~v~~~~~v~~i~~--~~v~---~~~-----~~---------~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~~--~- 348 (515)
.||++++++.++++.. +.+. +.. .. +|+..++++|.||+|+| ..|++..+...++ +
T Consensus 475 ~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG--~~p~~~~l~~~~~~~l~ 552 (604)
T PRK13984 475 EGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIG--QAPDYSYLPEELKSKLE 552 (604)
T ss_pred cCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeC--CCCChhhhhhhhccCcc
Confidence 7999999988888753 2332 211 01 23445799999999999 5787744433332 4
Q ss_pred CCCCceeeCCCccccCCCCEEEeccccccCccchHHHHHHHHHhhc
Q 010217 349 TNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKAD 394 (515)
Q Consensus 349 ~~~g~i~vd~~l~t~~~~~IyA~GD~~~~~~~~~~~~~~~~~~~a~ 394 (515)
..+|.|.||++++| ++|+|||+|||+..+ .+..++.++..+|.
T Consensus 553 ~~~G~i~vd~~~~T-s~~gVfAaGD~~~~~--~~v~Ai~~G~~AA~ 595 (604)
T PRK13984 553 FVRGRILTNEYGQT-SIPWLFAGGDIVHGP--DIIHGVADGYWAAE 595 (604)
T ss_pred ccCCeEEeCCCCcc-CCCCEEEecCcCCch--HHHHHHHHHHHHHH
Confidence 35788999999998 999999999999865 35667777776554
No 71
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.95 E-value=1.1e-26 Score=241.91 Aligned_cols=294 Identities=17% Similarity=0.210 Sum_probs=181.6
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEE
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECF 135 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~ 135 (515)
...++|+|||||+||++||..|++.|++|+|+|+.+..++.. .+..+......++.....+++.+.|+++. .+..+.
T Consensus 141 ~~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l--~~gip~~~~~~~~~~~~~~~~~~~Gv~~~-~~~~v~ 217 (485)
T TIGR01317 141 RTGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLL--MYGIPNMKLDKAIVDRRIDLLSAEGIDFV-TNTEIG 217 (485)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCcee--eccCCCccCCHHHHHHHHHHHHhCCCEEE-CCCEeC
Confidence 345899999999999999999999999999999988766432 11111111122344445567788887763 333331
Q ss_pred EEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCC-cCCCCCCCCC-CccccccChhHHHHHHHHHHHHHHhcCCC
Q 010217 136 KIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR-ANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASLP 213 (515)
Q Consensus 136 ~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~-~~~~~ipG~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 213 (515)
.+ +..+ .....||+||+|||+. |..+++||.+ .++++. .++..............
T Consensus 218 -~~-----~~~~-----------~~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~------~~~l~~~~~~~~~~~~~ 274 (485)
T TIGR01317 218 -VD-----ISAD-----------ELKEQFDAVVLAGGATKPRDLPIPGRELKGIHYA------MEFLPSATKALLGKDFK 274 (485)
T ss_pred -Cc-----cCHH-----------HHHhhCCEEEEccCCCCCCcCCCCCcCCCCcEeH------HHHHHHHhhhhcccccc
Confidence 11 1100 1146799999999998 8889999975 334321 11111110000000000
Q ss_pred CCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccccc---------cH--HHHH
Q 010217 214 NLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMF---------DK--RITA 282 (515)
Q Consensus 214 ~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~~---------~~--~~~~ 282 (515)
.+. .....+++|+|||+|++|+|+|..+.+++ ..+|+++++.+..+... +. ++..
T Consensus 275 ~~~-~~~~~gk~VvViGgG~~g~d~a~~a~~~g-------------a~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~ 340 (485)
T TIGR01317 275 DII-FIKAKGKKVVVIGGGDTGADCVGTSLRHG-------------AASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDY 340 (485)
T ss_pred ccc-cccCCCCEEEEECCcHHHHHHHHHHHHcC-------------CCEEEEEEecCCChhhcccccCCCccchhhhhHH
Confidence 000 00135789999999999999998887764 45899999877654321 11 1222
Q ss_pred HHHHHhhcCCeEE-EcCcEEEEEeC---CeEEEEe--------cC---------CCceEEEecCeEEEccCCCCccchHH
Q 010217 283 FAEEKFSRDGIDV-KLGSMVVKVTD---KEIFTKV--------RG---------NGETSSMPYGMVVWSTGIAPHAIIKD 341 (515)
Q Consensus 283 ~~~~~l~~~gV~v-~~~~~v~~i~~---~~v~~~~--------~~---------~G~~~~i~~D~vi~a~G~~~~p~~~~ 341 (515)
..++..+..||.+ ++++.+.+|.+ +.++.+. .. .|+..+++||.||+|+|+. .|++ .
T Consensus 341 a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~-~p~~-~ 418 (485)
T TIGR01317 341 AHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFV-GPEQ-I 418 (485)
T ss_pred HHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcC-CCcc-c
Confidence 2334444457654 46777777753 2332111 01 2344579999999999941 3666 5
Q ss_pred HHHHhCC--CCCCceee-CCCccccCCCCEEEeccccccCccchHHHHHHHHHhh
Q 010217 342 FMKQVGQ--TNRRALAT-DEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKA 393 (515)
Q Consensus 342 l~~~~~~--~~~g~i~v-d~~l~t~~~~~IyA~GD~~~~~~~~~~~~~~~~~~~a 393 (515)
+++.+++ +.+|.+.+ |++++| +.|+|||+|||+..+. .+..++.++..+|
T Consensus 419 ~~~~~gl~~~~~G~i~~~~~~~~T-s~~gVfAaGD~~~g~~-~~~~Av~~G~~AA 471 (485)
T TIGR01317 419 LLDDFGVKKTRRGNISAGYDDYST-SIPGVFAAGDCRRGQS-LIVWAINEGRKAA 471 (485)
T ss_pred cccccCcccCCCCCEEecCCCceE-CCCCEEEeeccCCCcH-HHHHHHHHHHHHH
Confidence 6677776 56788854 678888 9999999999997543 4555666655544
No 72
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.95 E-value=1.2e-26 Score=249.58 Aligned_cols=290 Identities=14% Similarity=0.161 Sum_probs=189.5
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEE
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECF 135 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~ 135 (515)
.+.++|+|||||||||++|..|++.|++|+|+|+.+.+++.. ....+... .++++.....+++...|++++ ++..+.
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l-~~gip~~~-l~~~~~~~~~~~~~~~Gv~~~-~~~~v~ 384 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGML-TFGIPPFK-LDKTVLSQRREIFTAMGIDFH-LNCEIG 384 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCee-eccCCccc-CCHHHHHHHHHHHHHCCeEEE-cCCccC
Confidence 357999999999999999999999999999999998877542 11222222 223445555677888898764 343331
Q ss_pred EEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCc-CCCCCCCCCC-ccccccChhHHHHHHHHHH-HHHHhcCC
Q 010217 136 KIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA-NTFNTPGVEE-NCNFLKEVEDAQRIRRNVI-ESFEKASL 212 (515)
Q Consensus 136 ~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~-~~~~ipG~~~-~~~~~~~~~~a~~~~~~~~-~~~~~~~~ 212 (515)
+.+.+.+ ....||+|++|||+.+ ..+++||.+. +++. +..+..... +.......
T Consensus 385 ------~~~~~~~-----------l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~------a~~~l~~~~~~~~~~~~~ 441 (639)
T PRK12809 385 ------RDITFSD-----------LTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQ------ALPFLTAHTRQLMGLPES 441 (639)
T ss_pred ------CcCCHHH-----------HHhcCCEEEEeCCCCCCCCCCCCCCccCCcEe------HHHHHHHHHHhhccCccc
Confidence 1122211 1356999999999974 5678888752 3322 111111110 11000000
Q ss_pred CCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccc-cccccHHHHHHHHHHhhcC
Q 010217 213 PNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHI-LNMFDKRITAFAEEKFSRD 291 (515)
Q Consensus 213 ~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~-l~~~~~~~~~~~~~~l~~~ 291 (515)
...+ .....+++|+|||+|++++++|..+.+++ ..+||++++++.. ++..+.++ ..+++.
T Consensus 442 ~~~~-~~~~~gk~vvViGgG~~a~d~a~~~~~~G-------------a~~Vt~v~rr~~~~~~~~~~e~-----~~a~~e 502 (639)
T PRK12809 442 EEYP-LTDVEGKRVVVLGGGDTTMDCLRTSIRLN-------------AASVTCAYRRDEVSMPGSRKEV-----VNAREE 502 (639)
T ss_pred cccc-cccCCCCeEEEECCcHHHHHHHHHHHHcC-------------CCeEEEeeecCcccCCCCHHHH-----HHHHHc
Confidence 0000 01135789999999999999999887764 2489999987654 45444333 235678
Q ss_pred CeEEEcCcEEEEEeC---CeEE---EEecC---------------CCceEEEecCeEEEccCCCCccchHHHHHHhCC--
Q 010217 292 GIDVKLGSMVVKVTD---KEIF---TKVRG---------------NGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ-- 348 (515)
Q Consensus 292 gV~v~~~~~v~~i~~---~~v~---~~~~~---------------~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~~~-- 348 (515)
||++++++.++++.. +.+. +.... .|+++++++|.||+|+|+ .|+...+++.+++
T Consensus 503 Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~--~p~~~~~~~~~gl~~ 580 (639)
T PRK12809 503 GVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGF--QAHAMPWLQGSGIKL 580 (639)
T ss_pred CCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCC--CCCccccccccCccc
Confidence 999999999999862 2332 21111 245567999999999994 5554345666665
Q ss_pred CCCCceeeCC----CccccCCCCEEEeccccccCccchHHHHHHHHHhhc
Q 010217 349 TNRRALATDE----WLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKAD 394 (515)
Q Consensus 349 ~~~g~i~vd~----~l~t~~~~~IyA~GD~~~~~~~~~~~~~~~~~~~a~ 394 (515)
+.+|.|.||+ +++| +.|+|||+|||+..+ ..+..|+.++..+|.
T Consensus 581 ~~~G~i~vd~~~~~~~~T-s~~gVfA~GD~~~g~-~~vv~Ai~~Gr~AA~ 628 (639)
T PRK12809 581 DKWGLIQTGDVGYLPTQT-HLKKVFAGGDAVHGA-DLVVTAMAAGRQAAR 628 (639)
T ss_pred CCCCCEEeCCCcccCccc-CCCCEEEcCCCCCCc-hHHHHHHHHHHHHHH
Confidence 6778999986 4788 999999999999753 345677777766553
No 73
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.94 E-value=2.1e-25 Score=250.04 Aligned_cols=288 Identities=14% Similarity=0.110 Sum_probs=188.8
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhc-CceEEEEEeEEE
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKK-NVDICFWEAECF 135 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~i~v~~~~~~v~ 135 (515)
..++|+|||||||||+||.+|++.|++|+|||+++..++...............++...+...+..+ ++++ +.+++|.
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v-~~~t~V~ 240 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTL-LPRTTAF 240 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEE-EcCCEEE
Confidence 3579999999999999999999999999999999888775432211111111223333344455555 3665 4567888
Q ss_pred EEecCCCEEEEeeCCc---cC---CCCCceEEeecCEEEEccCCCcCCCCCCCCC-CccccccChhHHHHHHHHHHHHHH
Q 010217 136 KIDAENKKVYCRSSQN---TN---LNGKEEFCMDYDYLVIAMGARANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFE 208 (515)
Q Consensus 136 ~id~~~~~v~~~~~~~---~~---~~~~~~~~~~~d~lviAtG~~~~~~~ipG~~-~~~~~~~~~~~a~~~~~~~~~~~~ 208 (515)
.++.......+..... .. ...+....+.||+||||||+.++.+++||++ ++++....... +...
T Consensus 241 ~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pipG~~~pgV~~~~~~~~---~l~~------ 311 (985)
T TIGR01372 241 GYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFANNDRPGVMLAGAART---YLNR------ 311 (985)
T ss_pred EEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCCCCCCCCcEEchHHHH---HHHh------
Confidence 8865433222211000 00 0011223689999999999999999999976 44443322221 1110
Q ss_pred hcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccccccHHHHHHHHHHh
Q 010217 209 KASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKF 288 (515)
Q Consensus 209 ~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l 288 (515)
.. ...+++|+|||+|++|+|+|..|.+++ ...|+++++.+.+ ...+.+.+
T Consensus 312 -~~--------~~~gk~VvViG~G~~g~e~A~~L~~~G-------------~~vV~vv~~~~~~--------~~~l~~~L 361 (985)
T TIGR01372 312 -YG--------VAPGKRIVVATNNDSAYRAAADLLAAG-------------IAVVAIIDARADV--------SPEARAEA 361 (985)
T ss_pred -hC--------cCCCCeEEEECCCHHHHHHHHHHHHcC-------------CceEEEEccCcch--------hHHHHHHH
Confidence 00 024679999999999999999999863 1467888876543 22355778
Q ss_pred hcCCeEEEcCcEEEEEeCCe----EEEEecCCCceEEEecCeEEEccCCCCccchHHHHHHhCCCCCCceeeCC----Cc
Q 010217 289 SRDGIDVKLGSMVVKVTDKE----IFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDE----WL 360 (515)
Q Consensus 289 ~~~gV~v~~~~~v~~i~~~~----v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~~~~~~g~i~vd~----~l 360 (515)
++.||++++++.++++.+++ +++.. .+|+..+++||.|+++.| ..|++ .|+..++.. +..|+ +.
T Consensus 362 ~~~GV~i~~~~~v~~i~g~~~v~~V~l~~-~~g~~~~i~~D~V~va~G--~~Pnt-~L~~~lg~~----~~~~~~~~~~~ 433 (985)
T TIGR01372 362 RELGIEVLTGHVVAATEGGKRVSGVAVAR-NGGAGQRLEADALAVSGG--WTPVV-HLFSQRGGK----LAWDAAIAAFL 433 (985)
T ss_pred HHcCCEEEcCCeEEEEecCCcEEEEEEEe-cCCceEEEECCEEEEcCC--cCchh-HHHHhcCCC----eeeccccCcee
Confidence 89999999999999998642 33332 234444699999999999 68888 777777641 11111 11
Q ss_pred cccCCCCEEEeccccccCccchHHHHHHHHHhhc
Q 010217 361 RVEGSDSIYALGDCATVNQRRVMEDIAAIFSKAD 394 (515)
Q Consensus 361 ~t~~~~~IyA~GD~~~~~~~~~~~~~~~~~~~a~ 394 (515)
..++.|+||++|||+... .+..++.++..++.
T Consensus 434 ~~t~v~gVyaaGD~~g~~--~~~~A~~eG~~Aa~ 465 (985)
T TIGR01372 434 PGDAVQGCILAGAANGLF--GLAAALADGAAAGA 465 (985)
T ss_pred cCCCCCCeEEeeccCCcc--CHHHHHHHHHHHHH
Confidence 123799999999999764 45667777765553
No 74
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.93 E-value=2.3e-24 Score=222.23 Aligned_cols=269 Identities=27% Similarity=0.360 Sum_probs=209.0
Q ss_pred EEEECCcHHHHHHHHhccC--CCCeEEEEcCCCCCcc--CCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEE
Q 010217 61 VVVLGTGWAGTSFLKNLNN--PSYDVQVISPRNYFAF--TPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (515)
Q Consensus 61 VvIIGgG~AGlsaA~~L~~--~g~~V~vie~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~ 136 (515)
++|||+|+||+++|..|++ .+.+++++...+...+ .++...+..+......+..... ...+.++++ ...++|+.
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~-~~~~~v~~ 78 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPR-FNRATGIDV-RTGTEVTS 78 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccch-hHHhhCCEE-eeCCEEEE
Confidence 5899999999999998874 5667877776654443 3444555554444444444333 224556666 45788999
Q ss_pred EecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCCCCCCCCccccccChhHHHHHHHHHHHHHHhcCCCCCC
Q 010217 137 IDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLS 216 (515)
Q Consensus 137 id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 216 (515)
+|+..+.+.+.++ ++.||+|++|||++|..++ .......+.++..+++..++....
T Consensus 79 id~~~~~v~~~~g-----------~~~yd~LvlatGa~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------------ 134 (415)
T COG0446 79 IDPENKVVLLDDG-----------EIEYDYLVLATGARPRPPP-ISDWEGVVTLRLREDAEALKGGAE------------ 134 (415)
T ss_pred ecCCCCEEEECCC-----------cccccEEEEcCCCcccCCC-ccccCceEEECCHHHHHHHHHHHh------------
Confidence 9999999988742 7899999999999998877 222255788899999888877653
Q ss_pred HHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccccccc-HHHHHHHHHHhhcCCeEE
Q 010217 217 DEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFD-KRITAFAEEKFSRDGIDV 295 (515)
Q Consensus 217 ~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~~~-~~~~~~~~~~l~~~gV~v 295 (515)
..++++|+|+|++|+|+|..+.+. |.+|++++..+++++.+. +...+.+.+.+++.||++
T Consensus 135 -----~~~~v~vvG~G~~gle~A~~~~~~--------------G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~ 195 (415)
T COG0446 135 -----PPKDVVVVGAGPIGLEAAEAAAKR--------------GKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVEL 195 (415)
T ss_pred -----ccCeEEEECCcHHHHHHHHHHHHc--------------CCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEE
Confidence 246999999999999999999985 789999999999998876 899999999999999999
Q ss_pred EcCcEEEEEeCCe--EEE--EecCCCceEEEecCeEEEccCCCCccchHHHHHHhC--C-CCCCceeeCCCccccC-CCC
Q 010217 296 KLGSMVVKVTDKE--IFT--KVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVG--Q-TNRRALATDEWLRVEG-SDS 367 (515)
Q Consensus 296 ~~~~~v~~i~~~~--v~~--~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~~--~-~~~g~i~vd~~l~t~~-~~~ 367 (515)
++++.+.+|+.+. ... ....+++. +++|++++++| ..|++ .+....+ . ..+|+|.||+++++ + .++
T Consensus 196 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~g--~~p~~-~l~~~~~~~~~~~~g~i~v~~~~~~-~~~~~ 269 (415)
T COG0446 196 LLGTKVVGVEGKGNTLVVERVVGIDGEE--IKADLVIIGPG--ERPNV-VLANDALPGLALAGGAVLVDERGGT-SKDPD 269 (415)
T ss_pred EeCCceEEEEcccCcceeeEEEEeCCcE--EEeeEEEEeec--ccccH-HHHhhCccceeccCCCEEEcccccc-CCCCC
Confidence 9999999998643 121 23345554 99999999999 47776 6666664 4 56788999999998 6 899
Q ss_pred EEEeccccccCcc
Q 010217 368 IYALGDCATVNQR 380 (515)
Q Consensus 368 IyA~GD~~~~~~~ 380 (515)
|||+|||+..+..
T Consensus 270 v~a~GD~~~~~~~ 282 (415)
T COG0446 270 VYAAGDVAEIPAA 282 (415)
T ss_pred EEeccceEeeecc
Confidence 9999999987644
No 75
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.93 E-value=6.9e-25 Score=233.54 Aligned_cols=279 Identities=19% Similarity=0.217 Sum_probs=183.5
Q ss_pred CCCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEE
Q 010217 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAEC 134 (515)
Q Consensus 55 ~~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v 134 (515)
....++|+|||+||+||++|..|++.|++|+|+|+.+.+++.. ... .+....++++.....+.+.+.|+++. ++..+
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l-~~g-ip~~~~~~~~~~~~l~~~~~~Gv~~~-~~~~~ 210 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMM-RYG-IPAYRLPREVLDAEIQRILDLGVEVR-LGVRV 210 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCee-eec-CCCccCCHHHHHHHHHHHHHCCCEEE-eCCEE
Confidence 3457899999999999999999999999999999998877642 112 22222223344444456677887653 23322
Q ss_pred -EEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCc-CCCCCCCCCC-ccccccChhHHHHHHHHHHHHHHhcC
Q 010217 135 -FKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA-NTFNTPGVEE-NCNFLKEVEDAQRIRRNVIESFEKAS 211 (515)
Q Consensus 135 -~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~-~~~~ipG~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~ 211 (515)
..+.. .. ....||+||+|||+.. ..+.++|.+. +++ .+..+......
T Consensus 211 ~~~~~~-------~~-----------~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~------~~~~~l~~~~~------ 260 (564)
T PRK12771 211 GEDITL-------EQ-----------LEGEFDAVFVAIGAQLGKRLPIPGEDAAGVL------DAVDFLRAVGE------ 260 (564)
T ss_pred CCcCCH-------HH-----------HHhhCCEEEEeeCCCCCCcCCCCCCccCCcE------EHHHHHHHhhc------
Confidence 11111 00 0235999999999974 5567888542 211 11111111110
Q ss_pred CCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccc-cccccHHHHHHHHHHhhc
Q 010217 212 LPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHI-LNMFDKRITAFAEEKFSR 290 (515)
Q Consensus 212 ~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~-l~~~~~~~~~~~~~~l~~ 290 (515)
.+ ....+++|+|||+|.++++++..+.+++ ..+|+++++.+.. ++.....+ +.+.+
T Consensus 261 ~~-----~~~~gk~v~ViGgg~~a~d~a~~a~~lg-------------a~~v~ii~r~~~~~~~~~~~~~-----~~a~~ 317 (564)
T PRK12771 261 GE-----PPFLGKRVVVIGGGNTAMDAARTARRLG-------------AEEVTIVYRRTREDMPAHDEEI-----EEALR 317 (564)
T ss_pred cC-----CcCCCCCEEEECChHHHHHHHHHHHHcC-------------CCEEEEEEecCcccCCCCHHHH-----HHHHH
Confidence 00 0124679999999999999999888764 2578999887642 33333332 33456
Q ss_pred CCeEEEcCcEEEEEeCC--e---EEEEec------C-------CCceEEEecCeEEEccCCCCccchHHHHHH-hCC-CC
Q 010217 291 DGIDVKLGSMVVKVTDK--E---IFTKVR------G-------NGETSSMPYGMVVWSTGIAPHAIIKDFMKQ-VGQ-TN 350 (515)
Q Consensus 291 ~gV~v~~~~~v~~i~~~--~---v~~~~~------~-------~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~-~~~-~~ 350 (515)
.||++++++.+.++..+ + +++... . +|+..++++|.||+|+| +.|+. .++++ .++ +.
T Consensus 318 ~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G--~~p~~-~~~~~~~gl~~~ 394 (564)
T PRK12771 318 EGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIG--QDIDS-AGLESVPGVEVG 394 (564)
T ss_pred cCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcC--CCCch-hhhhhccCcccC
Confidence 79999999999999643 2 221111 1 35556799999999999 56766 45554 455 67
Q ss_pred CCceeeCC-CccccCCCCEEEeccccccCccchHHHHHHHHHhhc
Q 010217 351 RRALATDE-WLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKAD 394 (515)
Q Consensus 351 ~g~i~vd~-~l~t~~~~~IyA~GD~~~~~~~~~~~~~~~~~~~a~ 394 (515)
+|+|.||+ +++| ++|+|||+|||+..+ ..+..++.++..+|.
T Consensus 395 ~G~i~vd~~~~~t-s~~~Vfa~GD~~~g~-~~v~~Av~~G~~aA~ 437 (564)
T PRK12771 395 RGVVQVDPNFMMT-GRPGVFAGGDMVPGP-RTVTTAIGHGKKAAR 437 (564)
T ss_pred CCCEEeCCCCccC-CCCCEEeccCcCCCc-hHHHHHHHHHHHHHH
Confidence 88999998 5666 999999999999754 356777777776654
No 76
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.91 E-value=5.1e-23 Score=212.11 Aligned_cols=258 Identities=16% Similarity=0.201 Sum_probs=169.7
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccc-----------------------------------
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLP----------------------------------- 100 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~----------------------------------- 100 (515)
.+.++|+|||||+|||+||++|.+.|++|+|+|+++..|+.....
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~ 87 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMG 87 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhcc
Confidence 346899999999999999999999999999999998877653210
Q ss_pred --hhcc--C----------cccccccccchHHHHhhcCce--EEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeec
Q 010217 101 --SVTC--G----------TVEARSIVEPVRNIVRKKNVD--ICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDY 164 (515)
Q Consensus 101 --~~~~--g----------~~~~~~~~~~~~~~~~~~~i~--v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~ 164 (515)
.++. . ....+++.++++++.+.+++. ++ ++++|+.|++.++.+.+..... ++...+..|
T Consensus 88 f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~-~~t~V~~V~~~~~~w~V~~~~~----~~~~~~~~~ 162 (461)
T PLN02172 88 YRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVR-FETEVVRVEPVDGKWRVQSKNS----GGFSKDEIF 162 (461)
T ss_pred CCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEE-ecCEEEEEeecCCeEEEEEEcC----CCceEEEEc
Confidence 0000 0 001134666677778888875 54 5889999998776665543210 112235689
Q ss_pred CEEEEccC--CCcCCCCCCCCCCc---cccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHH
Q 010217 165 DYLVIAMG--ARANTFNTPGVEEN---CNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFA 239 (515)
Q Consensus 165 d~lviAtG--~~~~~~~ipG~~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A 239 (515)
|+||+||| +.|+.|++||.++. ....+.+.+. +..++|+|+|||+|.+|+|+|
T Consensus 163 d~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~----------------------~~~~gk~VvVVG~G~Sg~diA 220 (461)
T PLN02172 163 DAVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVP----------------------DPFKNEVVVVIGNFASGADIS 220 (461)
T ss_pred CEEEEeccCCCCCcCCCCCCcccCCceEEEecccCCc----------------------cccCCCEEEEECCCcCHHHHH
Confidence 99999999 67999999997532 1111111110 113678999999999999999
Q ss_pred HHHHHhhHHHHHhhCcccCCCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEeCCe-EEEEecCCCc
Q 010217 240 AELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDKE-IFTKVRGNGE 318 (515)
Q Consensus 240 ~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-v~~~~~~~G~ 318 (515)
.+|... +.+|+++.|...... ...+.....++..+..|..+.+++ +++ .||+
T Consensus 221 ~~L~~~--------------a~~V~l~~r~~~~~~----------~~~~~~~~~~v~~~~~I~~~~~~g~V~f---~DG~ 273 (461)
T PLN02172 221 RDIAKV--------------AKEVHIASRASESDT----------YEKLPVPQNNLWMHSEIDTAHEDGSIVF---KNGK 273 (461)
T ss_pred HHHHHh--------------CCeEEEEEeeccccc----------cccCcCCCCceEECCcccceecCCeEEE---CCCC
Confidence 999986 479999998764311 011222234455566676665443 433 4687
Q ss_pred eEEEecCeEEEccCCCCccchHHHHHHhCCCCCCceeeCCCc------c--ccC-CCCEEEecccccc
Q 010217 319 TSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEWL------R--VEG-SDSIYALGDCATV 377 (515)
Q Consensus 319 ~~~i~~D~vi~a~G~~~~p~~~~l~~~~~~~~~g~i~vd~~l------~--t~~-~~~IyA~GD~~~~ 377 (515)
. +++|.||+|||+ .++. .|++. .|.|.+|++. . ... .|+++.+|=+...
T Consensus 274 ~--~~~D~Ii~~TGy--~~~~-pfL~~-----~~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~ 331 (461)
T PLN02172 274 V--VYADTIVHCTGY--KYHF-PFLET-----NGYMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMG 331 (461)
T ss_pred C--ccCCEEEECCcC--Cccc-cccCc-----ccceeeCCCcchhhHHhhcCCCCCCcEEEEeccccc
Confidence 5 889999999995 5655 45443 3445454321 1 123 3899999965433
No 77
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.89 E-value=1.4e-22 Score=187.29 Aligned_cols=299 Identities=16% Similarity=0.255 Sum_probs=205.3
Q ss_pred CCCCeEEEECCcHHHHHHHHhccC-CC-CeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeE
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNN-PS-YDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAE 133 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~-~g-~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~ 133 (515)
.+..+|+|||||.+|++.|..+.+ .+ -+|.|||+..++.|+|.+..+..|....+.-.....+++.+. ..+++.+
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~---a~wi~ek 113 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKG---ATWIKEK 113 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCC---cHHHHHH
Confidence 457899999999999999988873 23 469999999999999988877777654444444444444432 2256678
Q ss_pred EEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCCCCCCC-----CccccccChhHHHHHHHHHHHHHH
Q 010217 134 CFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVE-----ENCNFLKEVEDAQRIRRNVIESFE 208 (515)
Q Consensus 134 v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ipG~~-----~~~~~~~~~~~a~~~~~~~~~~~~ 208 (515)
|..++++++.|.+++++ +|.||++|||+|..-+.-.|+|+. +++....+.-.+.+....+.+.-
T Consensus 114 v~~f~P~~N~v~t~gg~----------eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk- 182 (446)
T KOG3851|consen 114 VKEFNPDKNTVVTRGGE----------EISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFK- 182 (446)
T ss_pred HHhcCCCcCeEEccCCc----------EEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHHhcc-
Confidence 89999999999988654 899999999999987777777763 35555666666666666654322
Q ss_pred hcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccccccHHHHHHHHHHh
Q 010217 209 KASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKF 288 (515)
Q Consensus 209 ~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l 288 (515)
+|.-|--.-.+++-|.-|-.=..+..+.+.+.. +.|...+|.....-+.++.- ...++.+++..
T Consensus 183 -------------~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~-gvRd~a~iiy~Tsl~~iFgV--k~Y~~AL~k~~ 246 (446)
T KOG3851|consen 183 -------------KGNAIFTFPNTPIKCAGAPQKIMYISESYFRKR-GVRDNANIIYNTSLPTIFGV--KHYADALEKVI 246 (446)
T ss_pred -------------CCceEEecCCCccccCCCchhhhhhhHHHHHHh-CccccccEEEecCccceecH--HHHHHHHHHHH
Confidence 222232233333322222222222222222221 23345556555555555431 35677788888
Q ss_pred hcCCeEEEcCcEEEEEeCCe--EEEEecCC-CceEEEecCeEEEccCCCCccchHHHHHHhCC-CCCCceeeCC-Ccccc
Q 010217 289 SRDGIDVKLGSMVVKVTDKE--IFTKVRGN-GETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ-TNRRALATDE-WLRVE 363 (515)
Q Consensus 289 ~~~gV~v~~~~~v~~i~~~~--v~~~~~~~-G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~~~-~~~g~i~vd~-~l~t~ 363 (515)
++++|++.+.....+|..+. .++..+.+ |...+++++++-+...+ ..| +.+....+ +..|++.||. .+|++
T Consensus 247 ~~rni~vn~krnLiEV~~~~~~AvFe~L~kPG~t~ei~yslLHv~Ppm-s~p---e~l~~s~~adktGfvdVD~~TlQs~ 322 (446)
T KOG3851|consen 247 QERNITVNYKRNLIEVRTNDRKAVFENLDKPGVTEEIEYSLLHVTPPM-STP---EVLANSDLADKTGFVDVDQSTLQSK 322 (446)
T ss_pred HhcceEeeeccceEEEeccchhhHHHhcCCCCceeEEeeeeeeccCCC-CCh---hhhhcCcccCcccceecChhhhccc
Confidence 99999999999999987543 33444433 88889999999876654 233 55666667 8899999995 69998
Q ss_pred CCCCEEEeccccccCccchHHHHHH
Q 010217 364 GSDSIYALGDCATVNQRRVMEDIAA 388 (515)
Q Consensus 364 ~~~~IyA~GD~~~~~~~~~~~~~~~ 388 (515)
.+||||++|||.+.|..+.++++..
T Consensus 323 kypNVFgiGDc~n~PnsKTaAAvaa 347 (446)
T KOG3851|consen 323 KYPNVFGIGDCMNLPNSKTAAAVAA 347 (446)
T ss_pred cCCCceeeccccCCCchhhHHHHHh
Confidence 9999999999999999888777755
No 78
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.89 E-value=2.7e-22 Score=203.85 Aligned_cols=297 Identities=17% Similarity=0.165 Sum_probs=198.0
Q ss_pred CCCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEE
Q 010217 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAEC 134 (515)
Q Consensus 55 ~~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v 134 (515)
..+.++|.|||||||||+||..|++.|++||++|+.+..++. +.+-.+....+.++.+...+++.+.|++++ +++++
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGl--l~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~-~~~~v 196 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGL--LLYGIPDFKLPKDILDRRLELLERSGVEFK-LNVRV 196 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCcee--EEecCchhhccchHHHHHHHHHHHcCeEEE-EcceE
Confidence 445699999999999999999999999999999999888763 222244455566888888899999997764 34443
Q ss_pred EEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCC-cCCCCCCCCCCccccccChhHHHHHHHHHHHHHHhcCCC
Q 010217 135 FKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR-ANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLP 213 (515)
Q Consensus 135 ~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~-~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 213 (515)
++.++++. ..-.||++++|||+. |+..++||.+ +..+..|..+...+...... ..+
T Consensus 197 ------G~~it~~~-----------L~~e~Dav~l~~G~~~~~~l~i~g~d-----~~gv~~A~dfL~~~~~~~~~-~~~ 253 (457)
T COG0493 197 ------GRDITLEE-----------LLKEYDAVFLATGAGKPRPLDIPGED-----AKGVAFALDFLTRLNKEVLG-DFA 253 (457)
T ss_pred ------CCcCCHHH-----------HHHhhCEEEEeccccCCCCCCCCCcC-----CCcchHHHHHHHHHHHHHhc-ccc
Confidence 22333322 134579999999984 7888999975 12233444444443322111 111
Q ss_pred CCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccc--cccccHHHHHHHHHHhhcC
Q 010217 214 NLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHI--LNMFDKRITAFAEEKFSRD 291 (515)
Q Consensus 214 ~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~--l~~~~~~~~~~~~~~l~~~ 291 (515)
. .+.....+++|+|||+|.++++++....++++ .+|+.+++...- ....+........+...++
T Consensus 254 ~-~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga-------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~ee 319 (457)
T COG0493 254 E-DRTPPAKGKRVVVIGGGDTAMDCAGTALRLGA-------------KSVTCFYREDRDDETNEWPTWAAQLEVRSAGEE 319 (457)
T ss_pred c-ccCCCCCCCeEEEECCCCCHHHHHHHHhhcCC-------------eEEEEeccccccccCCcccccchhhhhhhhhhc
Confidence 0 00011245899999999999999988888752 478877532221 1122333455566777888
Q ss_pred CeEEEcCcEEEEEeC---CeEEEE---ec----------------CCCceEEEecCeEEEccCCCCccchHHHHH-HhCC
Q 010217 292 GIDVKLGSMVVKVTD---KEIFTK---VR----------------GNGETSSMPYGMVVWSTGIAPHAIIKDFMK-QVGQ 348 (515)
Q Consensus 292 gV~v~~~~~v~~i~~---~~v~~~---~~----------------~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~-~~~~ 348 (515)
|+..+......++.. +.+... .. ..|++..+++|.|+.|+|+.+.+....+.. .+..
T Consensus 320 g~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~ 399 (457)
T COG0493 320 GVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKL 399 (457)
T ss_pred CCcccccCCceeEeecCCCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCccccccccccccc
Confidence 998888888777763 223211 10 136677899999999999654433311112 2334
Q ss_pred CCCCceeeCCCc-cccCCCCEEEeccccccCccchHHHHHHHHHhh
Q 010217 349 TNRRALATDEWL-RVEGSDSIYALGDCATVNQRRVMEDIAAIFSKA 393 (515)
Q Consensus 349 ~~~g~i~vd~~l-~t~~~~~IyA~GD~~~~~~~~~~~~~~~~~~~a 393 (515)
+.+|.|.+|+.+ +| +.|++||.||+... ...++.++.++..++
T Consensus 400 ~~~g~i~~~~~~~~t-s~~~vfa~gD~~~g-~~~vv~ai~eGr~aa 443 (457)
T COG0493 400 DKRGRIKVDENLQQT-SIPGVFAGGDAVRG-AALVVWAIAEGREAA 443 (457)
T ss_pred CCCCceecccccccc-cCCCeeeCceeccc-hhhhhhHHhhchHHH
Confidence 788999999998 76 99999999999996 455666776655444
No 79
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.88 E-value=1.5e-21 Score=186.05 Aligned_cols=279 Identities=19% Similarity=0.331 Sum_probs=203.5
Q ss_pred CCCCeEEEECCcHHHHHHHHhcc--CCCCeEEEEcCCCCCccC--Cccchh-ccCc-----------c--cccccccch-
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLN--NPSYDVQVISPRNYFAFT--PLLPSV-TCGT-----------V--EARSIVEPV- 116 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~--~~g~~V~vie~~~~~~~~--~~~~~~-~~g~-----------~--~~~~~~~~~- 116 (515)
.+..-.+|||+|.+..+++.... ..+..|.+|+.++.+.|. |+.... -.+. . ..+++....
T Consensus 176 p~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd 255 (659)
T KOG1346|consen 176 PKHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPD 255 (659)
T ss_pred cccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCC
Confidence 34567899999999999988776 677889999988777664 322111 0000 0 012222221
Q ss_pred ------HHHH--hhcCceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCCC-CCC----
Q 010217 117 ------RNIV--RKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNT-PGV---- 183 (515)
Q Consensus 117 ------~~~~--~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i-pG~---- 183 (515)
+++- ..-|+-+ +...+|+.||..++.|.+.++. +|.||+++||||.+|...++ ...
T Consensus 256 ~FfvspeDLp~~~nGGvAv-l~G~kvvkid~~d~~V~LnDG~----------~I~YdkcLIATG~~Pk~l~~~~~A~~ev 324 (659)
T KOG1346|consen 256 GFFVSPEDLPKAVNGGVAV-LRGRKVVKIDEEDKKVILNDGT----------TIGYDKCLIATGVRPKKLQVFEEASEEV 324 (659)
T ss_pred cceeChhHCcccccCceEE-EeccceEEeecccCeEEecCCc----------EeehhheeeecCcCcccchhhhhcCHHh
Confidence 2211 1224433 3445899999999999999876 99999999999999976643 221
Q ss_pred CCccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEE
Q 010217 184 EENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKI 263 (515)
Q Consensus 184 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~V 263 (515)
.+.+.+++...|..++.+.+. ..++|.|||+|..|.|+|+.|.+..+. .+.+|
T Consensus 325 k~kit~fr~p~DF~rlek~~a-----------------ek~siTIiGnGflgSELacsl~rk~r~----------~g~eV 377 (659)
T KOG1346|consen 325 KQKITYFRYPADFKRLEKGLA-----------------EKQSITIIGNGFLGSELACSLKRKYRN----------EGVEV 377 (659)
T ss_pred hhheeEEecchHHHHHHHhhh-----------------hcceEEEEcCcchhhhHHHHHHHhhhc----------cCcEE
Confidence 245667788888888776653 236999999999999999999876431 37888
Q ss_pred EEEecccccccc-ccHHHHHHHHHHhhcCCeEEEcCcEEEEEeCC--eEEEEecCCCceEEEecCeEEEccCCCCccchH
Q 010217 264 TLLEAADHILNM-FDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK--EIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIK 340 (515)
Q Consensus 264 tlv~~~~~~l~~-~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~ 340 (515)
+-+......+.. +++.++++..+.+++.||.++.+..|..+... .+.+. ++||.+ +..|+||+|+| -.||+
T Consensus 378 ~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lk-L~dG~~--l~tD~vVvavG--~ePN~- 451 (659)
T KOG1346|consen 378 HQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLK-LSDGSE--LRTDLVVVAVG--EEPNS- 451 (659)
T ss_pred EEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccceEEE-ecCCCe--eeeeeEEEEec--CCCch-
Confidence 776555444333 67788999999999999999999999888643 34444 578986 99999999999 68888
Q ss_pred HHHHHhCC--C-CCCceeeCCCccccCCCCEEEeccccccCcc
Q 010217 341 DFMKQVGQ--T-NRRALATDEWLRVEGSDSIYALGDCATVNQR 380 (515)
Q Consensus 341 ~l~~~~~~--~-~~g~i~vd~~l~t~~~~~IyA~GD~~~~~~~ 380 (515)
+|++..|+ + .-|++.||..|+. ..|||++||++.+...
T Consensus 452 ela~~sgLeiD~~lGGfrvnaeL~a--r~NvwvAGdaacF~D~ 492 (659)
T KOG1346|consen 452 ELAEASGLEIDEKLGGFRVNAELKA--RENVWVAGDAACFEDG 492 (659)
T ss_pred hhcccccceeecccCcEEeeheeec--ccceeeecchhhhhcc
Confidence 78777776 4 3489999999996 6899999999987654
No 80
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.86 E-value=5.4e-22 Score=178.64 Aligned_cols=266 Identities=17% Similarity=0.243 Sum_probs=172.9
Q ss_pred eEEEECCcHHHHHHHHhcc--CCCCeEEEEcCCCCCccCCccchhccCcccccccccch-HHHHhhcCceEEEEEeEEEE
Q 010217 60 KVVVLGTGWAGTSFLKNLN--NPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPV-RNIVRKKNVDICFWEAECFK 136 (515)
Q Consensus 60 ~VvIIGgG~AGlsaA~~L~--~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~i~v~~~~~~v~~ 136 (515)
+.+|||||+||++||..|+ .+..+|+|+...+..--...+.. .....+..++.+.- ..+..+.. ++++. |..
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~-i~~ylekfdv~eq~~~elg~~f~---~~~~~-v~~ 75 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQK-IGQYLEKFDVKEQNCHELGPDFR---RFLND-VVT 75 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHH-HHHHHHhcCccccchhhhcccHH---HHHHh-hhh
Confidence 4789999999999999998 67789999997753211000000 00000111111110 01111111 13333 666
Q ss_pred EecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCCCCCCCCccccccChhHHHHHHHHHHHHHHhcCCCCCC
Q 010217 137 IDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLS 216 (515)
Q Consensus 137 id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 216 (515)
++-.++.++++++. .+.|++|+++||++|... ..|.+..+..+++.+.++.++..+.
T Consensus 76 ~~s~ehci~t~~g~----------~~ky~kKOG~tg~kPklq-~E~~n~~Iv~irDtDsaQllq~kl~------------ 132 (334)
T KOG2755|consen 76 WDSSEHCIHTQNGE----------KLKYFKLCLCTGYKPKLQ-VEGINPKIVGIRDTDSAQLLQCKLV------------ 132 (334)
T ss_pred hccccceEEecCCc----------eeeEEEEEEecCCCccee-ecCCCceEEEEecCcHHHHHHHHHh------------
Confidence 67777788888755 899999999999998643 3445567888889999999988874
Q ss_pred HHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccccc-ccHHHHHHHHHHhhcC----
Q 010217 217 DEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM-FDKRITAFAEEKFSRD---- 291 (515)
Q Consensus 217 ~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~-~~~~~~~~~~~~l~~~---- 291 (515)
+.|.|+|+|.|-+++|++.++.. .+|+|....+.+-.+ +++.+.+++...++..
T Consensus 133 -----kaK~VlilgnGgia~El~yElk~----------------~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~ 191 (334)
T KOG2755|consen 133 -----KAKIVLILGNGGIAMELTYELKI----------------LNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTR 191 (334)
T ss_pred -----hcceEEEEecCchhHHHHHHhhc----------------ceeEEEecchhhhhcccCccHHHHhHhhhhcccccc
Confidence 67899999999999999999975 699999998888765 6788877776666211
Q ss_pred --------CeEEEcCcE-----------------EEEE-------------------eCC---eEEEEecCCCceEEEec
Q 010217 292 --------GIDVKLGSM-----------------VVKV-------------------TDK---EIFTKVRGNGETSSMPY 324 (515)
Q Consensus 292 --------gV~v~~~~~-----------------v~~i-------------------~~~---~v~~~~~~~G~~~~i~~ 324 (515)
.++.+.+++ ...+ ... .++.-+...|.-..+.|
T Consensus 192 ~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~ 271 (334)
T KOG2755|consen 192 IIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTC 271 (334)
T ss_pred hhhhhhhhhhhhcCcccccCcccccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhcccccccccccccceeee
Confidence 111110000 0000 000 01111112222224789
Q ss_pred CeEEEccCCCCccchHHH-HHHhCCCCCCceeeCCCccccCCCCEEEecccccc
Q 010217 325 GMVVWSTGIAPHAIIKDF-MKQVGQTNRRALATDEWLRVEGSDSIYALGDCATV 377 (515)
Q Consensus 325 D~vi~a~G~~~~p~~~~l-~~~~~~~~~g~i~vd~~l~t~~~~~IyA~GD~~~~ 377 (515)
|++++|+|+ .||...+ ...+.+.++|++.||+.|+| +.|+|||+||+++.
T Consensus 272 d~ivSatgv--tpn~e~~~~~~lq~~edggikvdd~m~t-slpdvFa~gDvctt 322 (334)
T KOG2755|consen 272 DFIVSATGV--TPNSEWAMNKMLQITEDGGIKVDDAMET-SLPDVFAAGDVCTT 322 (334)
T ss_pred eEEEecccc--CcCceEEecChhhhccccCeeehhhccc-cccceeeecceecc
Confidence 999999995 6777422 23334478999999999998 99999999999884
No 81
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.85 E-value=2e-21 Score=203.11 Aligned_cols=302 Identities=17% Similarity=0.192 Sum_probs=178.2
Q ss_pred CCCCCCCCCCCCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCc
Q 010217 46 AYSVAPPEMGIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNV 125 (515)
Q Consensus 46 ~~~~~~~~~~~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i 125 (515)
.|..+..+...+.++|.|||+|||||+||-.|.+.|+.|+|+|+.+..|+- +..+++.-.++ +.++++--+++...||
T Consensus 1773 gwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggl-l~ygipnmkld-k~vv~rrv~ll~~egi 1850 (2142)
T KOG0399|consen 1773 GWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGL-LMYGIPNMKLD-KFVVQRRVDLLEQEGI 1850 (2142)
T ss_pred cCCccCCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCce-eeecCCccchh-HHHHHHHHHHHHhhCc
Confidence 344555666677899999999999999999999999999999999998863 33333333333 3466666778888897
Q ss_pred eEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCC-cCCCCCCCCCCccccccChhHHHHHHHHHH
Q 010217 126 DICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR-ANTFNTPGVEENCNFLKEVEDAQRIRRNVI 204 (515)
Q Consensus 126 ~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~-~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~ 204 (515)
++ +.++++ ++.+.+.. ..-.+|++|+|+|+. |+.+++||.+ ++.+.-|.++..+-.
T Consensus 1851 ~f-~tn~ei------gk~vs~d~-----------l~~~~daiv~a~gst~prdlpv~grd-----~kgv~fame~l~~nt 1907 (2142)
T KOG0399|consen 1851 RF-VTNTEI------GKHVSLDE-----------LKKENDAIVLATGSTTPRDLPVPGRD-----LKGVHFAMEFLEKNT 1907 (2142)
T ss_pred eE-Eeeccc------cccccHHH-----------HhhccCeEEEEeCCCCCcCCCCCCcc-----ccccHHHHHHHHHhH
Confidence 75 334433 33444321 245799999999985 8999999976 222333444333221
Q ss_pred HHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccc---------cccc
Q 010217 205 ESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADH---------ILNM 275 (515)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~---------~l~~ 275 (515)
..+-...+.. .....++|+|+|||||.+|.+|...-.+++.. .|.-++--+. +.|.
T Consensus 1908 k~lld~~~d~--~~~~~~gkkvivigggdtg~dcigtsvrhg~~-------------sv~n~ellp~pp~~ra~~npwpq 1972 (2142)
T KOG0399|consen 1908 KSLLDSVLDG--NYISAKGKKVIVIGGGDTGTDCIGTSVRHGCK-------------SVGNFELLPQPPPERAPDNPWPQ 1972 (2142)
T ss_pred Hhhhcccccc--ceeccCCCeEEEECCCCccccccccchhhccc-------------eecceeecCCCCcccCCCCCCcc
Confidence 1111111100 00113789999999999999999888887643 2322221111 1111
Q ss_pred cc---------HHHHHHHHHHhhcCCe----------EEEcCcEEEEEeC-----CeEEEEecCCCceEEEecCeEEEcc
Q 010217 276 FD---------KRITAFAEEKFSRDGI----------DVKLGSMVVKVTD-----KEIFTKVRGNGETSSMPYGMVVWST 331 (515)
Q Consensus 276 ~~---------~~~~~~~~~~l~~~gV----------~v~~~~~v~~i~~-----~~v~~~~~~~G~~~~i~~D~vi~a~ 331 (515)
++ .++.+..-+..+..-| ..+++-+..+|+. +.-.... .++.+..++||+||+|.
T Consensus 1973 wprvfrvdygh~e~~~~~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~e-i~~see~~eadlv~lam 2051 (2142)
T KOG0399|consen 1973 WPRVFRVDYGHAEAKEHYGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKE-INNSEEIIEADLVILAM 2051 (2142)
T ss_pred CceEEEeecchHHHHHHhCCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEE-cCCcceeeecceeeeec
Confidence 11 1111111111111100 0111222233321 1122222 23444569999999999
Q ss_pred CCCCccchHHHHHHhCC--CCCCceee-CCCccccCCCCEEEeccccccCccchHHHHHHHHHh
Q 010217 332 GIAPHAIIKDFMKQVGQ--TNRRALAT-DEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSK 392 (515)
Q Consensus 332 G~~~~p~~~~l~~~~~~--~~~g~i~v-d~~l~t~~~~~IyA~GD~~~~~~~~~~~~~~~~~~~ 392 (515)
|+. -|.. ...+++++ ++++.|.+ ++.+.+ ++++|||+|||-.. +..++-++.++..+
T Consensus 2052 gf~-gpe~-~~~~~~~~~~d~rsni~t~~~~y~t-~v~~vfaagdcrrg-qslvvwai~egrq~ 2111 (2142)
T KOG0399|consen 2052 GFV-GPEK-SVIEQLNLKTDPRSNILTPKDSYST-DVAKVFAAGDCRRG-QSLVVWAIQEGRQA 2111 (2142)
T ss_pred ccc-Ccch-hhhhhcCcccCccccccCCCccccc-cccceeecccccCC-ceEEEEEehhhhHH
Confidence 973 3443 55778887 56677776 344666 89999999999885 44444455554433
No 82
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.84 E-value=6.9e-20 Score=196.89 Aligned_cols=252 Identities=15% Similarity=0.196 Sum_probs=142.7
Q ss_pred CCCCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCc--------------cCCccchhc---cCcccc-------
Q 010217 54 MGIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFA--------------FTPLLPSVT---CGTVEA------- 109 (515)
Q Consensus 54 ~~~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~--------------~~~~~~~~~---~g~~~~------- 109 (515)
...+.++|+||||||||++||++|++.||+|||+|+.+..+ +.+++.... .|.+..
T Consensus 379 ~~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp~R~ 458 (1028)
T PRK06567 379 KEPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGITVRW 458 (1028)
T ss_pred CCCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCccccc
Confidence 34578999999999999999999999999999999864211 112222221 121111
Q ss_pred -cccccchHHHHhhcCceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCC-CcCCCCCCCCCC-c
Q 010217 110 -RSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGA-RANTFNTPGVEE-N 186 (515)
Q Consensus 110 -~~~~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~-~~~~~~ipG~~~-~ 186 (515)
++.+..++. +.+.++++++..+.... +.++.++ .....||+|+||||+ .|+.+++||.+. +
T Consensus 459 ~k~~l~~i~~-il~~g~~v~~~~gv~lG-----~dit~ed----------l~~~gyDAV~IATGA~kpr~L~IPGeda~G 522 (1028)
T PRK06567 459 DKNNLDILRL-ILERNNNFKYYDGVALD-----FNITKEQ----------AFDLGFDHIAFCIGAGQPKVLDIENFEAKG 522 (1028)
T ss_pred hHHHHHHHHH-HHhcCCceEEECCeEEC-----ccCCHHH----------HhhcCCCEEEEeCCCCCCCCCCCCCccCCC
Confidence 111112122 22334455554332221 2222221 125679999999999 699999999752 2
Q ss_pred cccccChhHHHHHHHHHHH--HHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHh--------hHHHHHhhCcc
Q 010217 187 CNFLKEVEDAQRIRRNVIE--SFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDF--------VDEDLFKLYPK 256 (515)
Q Consensus 187 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~--------~~~~~~~~~p~ 256 (515)
++ +..+. ...+.. .+.....+. ...+++|+|||||++|+|+|.+...+ ..+...+.||.
T Consensus 523 V~---sA~Df---L~~l~~~~~~~~~~~~~-----~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~ 591 (1028)
T PRK06567 523 VK---TASDF---LMTLQSGGAFLKNSNTN-----MVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTE 591 (1028)
T ss_pred eE---EHHHH---HHHHhhcccccccccCc-----ccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhccc
Confidence 22 22222 112111 000000010 12357999999999999999955431 11111111111
Q ss_pred ----------------------------cCCCcEEEEEeccccc-cccc---cHHHHHHHHHHhhcCCeEEEcCcEEEEE
Q 010217 257 ----------------------------VKDSVKITLLEAADHI-LNMF---DKRITAFAEEKFSRDGIDVKLGSMVVKV 304 (515)
Q Consensus 257 ----------------------------~~~~~~Vtlv~~~~~~-l~~~---~~~~~~~~~~~l~~~gV~v~~~~~v~~i 304 (515)
.+..-.|++++|+..- +|.. ..++ +...++||+++.+..+.+|
T Consensus 592 ~d~eia~~f~~h~r~~g~~~~~~~v~~l~~~~G~VtIvYRr~~~empA~~~~~eEv-----~~A~eEGV~f~~~~~P~~i 666 (1028)
T PRK06567 592 EDKEIAEEFIAHAKLFKEAKNNEELRKVFNKLGGATVYYRGRLQDSPAYKLNHEEL-----IYALALGVDFKENMQPLRI 666 (1028)
T ss_pred ccHHHHHHHHHHHHhhcchhccchhhhhhccCCceEEEecCChhhCCCCCCCHHHH-----HHHHHcCcEEEecCCcEEE
Confidence 0011128999887643 3432 2232 3455679999999999998
Q ss_pred eCC---e---EEEEec------------CCC-------------ceEEEecCeEEEccCCCCccch
Q 010217 305 TDK---E---IFTKVR------------GNG-------------ETSSMPYGMVVWSTGIAPHAII 339 (515)
Q Consensus 305 ~~~---~---v~~~~~------------~~G-------------~~~~i~~D~vi~a~G~~~~p~~ 339 (515)
..+ . +++... ..+ ++.+|+||.||+|+| +.|++
T Consensus 667 ~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G--~~~~~ 730 (1028)
T PRK06567 667 NVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIG--IENNT 730 (1028)
T ss_pred EecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecc--cCCcc
Confidence 532 2 222211 112 446799999999999 78877
No 83
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.83 E-value=1.4e-19 Score=189.11 Aligned_cols=160 Identities=22% Similarity=0.305 Sum_probs=103.4
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccc------------hhc----------c---------Cc
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLP------------SVT----------C---------GT 106 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~------------~~~----------~---------g~ 106 (515)
+++|+|||||++||++|+.|.+.|++++++|+++.+|+..... ... + ..
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f 80 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDF 80 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCC
Confidence 4799999999999999999999999999999999988753211 000 0 01
Q ss_pred ccccccccchHHHHhhcCc--eEEEEEeEEEEEecCC-----CEEEEeeCCccCCCCCceEEeecCEEEEccCC--CcCC
Q 010217 107 VEARSIVEPVRNIVRKKNV--DICFWEAECFKIDAEN-----KKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGA--RANT 177 (515)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~i--~v~~~~~~v~~id~~~-----~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~--~~~~ 177 (515)
....++.++++++.+++++ .++ ++++|+.+.... ....+.... +++..+..||+||+|||. .|+.
T Consensus 81 ~~~~~v~~Yl~~Ya~~f~L~~~I~-fnt~V~~v~~~~d~~~~~~W~V~~~~-----~g~~~~~~fD~VvvatG~~~~P~~ 154 (531)
T PF00743_consen 81 PSHSEVLEYLESYAEHFGLRKHIR-FNTEVVSVERDPDFSATGKWEVTTEN-----DGKEETEEFDAVVVATGHFSKPNI 154 (531)
T ss_dssp EBHHHHHHHHHHHHHHTTGGGGEE-TSEEEEEEEEETTTT-ETEEEEEETT-----TTEEEEEEECEEEEEE-SSSCESB
T ss_pred CCHHHHHHHHHHHHhhhCCcceEE-EccEEeEeeeccccCCCceEEEEeec-----CCeEEEEEeCeEEEcCCCcCCCCC
Confidence 1123566677888887775 344 478898887532 234444322 333456779999999995 5777
Q ss_pred CC--CCCCCCc---cccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHh
Q 010217 178 FN--TPGVEEN---CNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDF 245 (515)
Q Consensus 178 ~~--ipG~~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~ 245 (515)
|. +||++.. +...+++.+ .+..++|+|+|||+|.+|+++|.+|+..
T Consensus 155 P~~~~~G~e~F~G~i~HS~~yr~----------------------~~~f~gKrVlVVG~g~Sg~DIa~el~~~ 205 (531)
T PF00743_consen 155 PEPSFPGLEKFKGEIIHSKDYRD----------------------PEPFKGKRVLVVGGGNSGADIAVELSRV 205 (531)
T ss_dssp -----CTGGGHCSEEEEGGG--T----------------------GGGGTTSEEEEESSSHHHHHHHHHHTTT
T ss_pred ChhhhhhhhcCCeeEEccccCcC----------------------hhhcCCCEEEEEeCCHhHHHHHHHHHHh
Confidence 74 8997631 222222211 1235789999999999999999999875
No 84
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.83 E-value=4.3e-21 Score=177.61 Aligned_cols=141 Identities=30% Similarity=0.436 Sum_probs=89.8
Q ss_pred eEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccC-Cccc-hhccCccccccccc-----chHHHHhhcCceEEEEEe
Q 010217 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT-PLLP-SVTCGTVEARSIVE-----PVRNIVRKKNVDICFWEA 132 (515)
Q Consensus 60 ~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~-~~~~-~~~~g~~~~~~~~~-----~~~~~~~~~~i~v~~~~~ 132 (515)
||||||||+||++||.+|++.+++|+|||+.+...+. ..++ .............. .+.+.+...++++ .+++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~ 79 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEI-RLNA 79 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEE-EHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEE-eecc
Confidence 7999999999999999999999999999887654332 1111 11111101001110 3333445677775 3678
Q ss_pred EEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCCCCCCCCccccccChhHHHHHHHH
Q 010217 133 ECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRN 202 (515)
Q Consensus 133 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ipG~~~~~~~~~~~~~a~~~~~~ 202 (515)
++..|+...+.+............+...++.||+||||||+.|+.|++||. +.........++..+...
T Consensus 80 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~-~~~~~~~~~~~~~~~~~~ 148 (201)
T PF07992_consen 80 KVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGE-EVAYFLRGVDDAQRFLEL 148 (201)
T ss_dssp TEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTT-TTECBTTSEEHHHHHHTH
T ss_pred ccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCC-cccccccccccccccccc
Confidence 999999988854111000000002234589999999999999999999997 344555677777666554
No 85
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.73 E-value=8.4e-18 Score=155.79 Aligned_cols=165 Identities=19% Similarity=0.237 Sum_probs=100.9
Q ss_pred EEECCcHHHHHHHHhccCCCCe-EEEEcCCCCCccCCc---------cchh---c--------------------cCccc
Q 010217 62 VVLGTGWAGTSFLKNLNNPSYD-VQVISPRNYFAFTPL---------LPSV---T--------------------CGTVE 108 (515)
Q Consensus 62 vIIGgG~AGlsaA~~L~~~g~~-V~vie~~~~~~~~~~---------~~~~---~--------------------~g~~~ 108 (515)
+|||||||||++|.+|.+.|.+ |+|||+++..++... .+.. . .....
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 7999999999999999999999 999999876654311 0000 0 00111
Q ss_pred ccccccchHHHHhhcCceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCC--CcCCCCCCC-CCC
Q 010217 109 ARSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGA--RANTFNTPG-VEE 185 (515)
Q Consensus 109 ~~~~~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~--~~~~~~ipG-~~~ 185 (515)
..++.++++.+.++++++++ .+++|+++...++.+.+.... + +++.+|+||+|||. .|+.|.+|| ...
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~-~~~~V~~v~~~~~~w~v~~~~-----~---~~~~a~~VVlAtG~~~~p~~p~~~g~~~~ 151 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIR-FNTRVESVRRDGDGWTVTTRD-----G---RTIRADRVVLATGHYSHPRIPDIPGSAFR 151 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEE-TS--EEEEEEETTTEEEEETT-----S----EEEEEEEEE---SSCSB---S-TTGGCS
T ss_pred HHHHHHHHHHHHhhcCcccc-cCCEEEEEEEeccEEEEEEEe-----c---ceeeeeeEEEeeeccCCCCcccccccccc
Confidence 23455567778888888864 578899998877645444322 1 37889999999996 788899999 333
Q ss_pred ccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEE
Q 010217 186 NCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITL 265 (515)
Q Consensus 186 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtl 265 (515)
..+....+.+ ....++++|+|||+|.+|+++|..|.+. +.+|++
T Consensus 152 ~~~h~~~~~~----------------------~~~~~~k~V~VVG~G~SA~d~a~~l~~~--------------g~~V~~ 195 (203)
T PF13738_consen 152 PIIHSADWRD----------------------PEDFKGKRVVVVGGGNSAVDIAYALAKA--------------GKSVTL 195 (203)
T ss_dssp EEEEGGG-ST----------------------TGGCTTSEEEEE--SHHHHHHHHHHTTT--------------CSEEEE
T ss_pred ceEehhhcCC----------------------hhhcCCCcEEEEcChHHHHHHHHHHHhh--------------CCEEEE
Confidence 2222211111 0113668999999999999999999885 689999
Q ss_pred Eecccc
Q 010217 266 LEAADH 271 (515)
Q Consensus 266 v~~~~~ 271 (515)
+.|.+.
T Consensus 196 ~~R~~~ 201 (203)
T PF13738_consen 196 VTRSPI 201 (203)
T ss_dssp EESS--
T ss_pred EecCCC
Confidence 999874
No 86
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.72 E-value=2.1e-16 Score=156.69 Aligned_cols=237 Identities=17% Similarity=0.228 Sum_probs=128.5
Q ss_pred CCeEEEECCcHHHHHHHHhccCCC-CeEEEEcCCCCCccCCc--cchhccCc------c---c-----------------
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPS-YDVQVISPRNYFAFTPL--LPSVTCGT------V---E----------------- 108 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g-~~V~vie~~~~~~~~~~--~~~~~~g~------~---~----------------- 108 (515)
.+|+|+||.||++|+.|..|...+ .++..+|+++.+.|++. +++..... + +
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl 81 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL 81 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence 368999999999999999998544 89999999999999862 23221110 0 0
Q ss_pred ------------ccccccchHHHHhhcCceEEEEEeEEEEEecCCC------EEEEeeCCccCCCCCceEEeecCEEEEc
Q 010217 109 ------------ARSIVEPVRNIVRKKNVDICFWEAECFKIDAENK------KVYCRSSQNTNLNGKEEFCMDYDYLVIA 170 (515)
Q Consensus 109 ------------~~~~~~~~~~~~~~~~i~v~~~~~~v~~id~~~~------~v~~~~~~~~~~~~~~~~~~~~d~lviA 170 (515)
..++.++++....+..-.+++ ..+|+.|++... .|.+.+. .+....+.++.||||
T Consensus 82 ~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~-~~~V~~I~~~~~~~~~~~~V~~~~~------~g~~~~~~ar~vVla 154 (341)
T PF13434_consen 82 YEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRY-GSEVTSIEPDDDGDEDLFRVTTRDS------DGDGETYRARNVVLA 154 (341)
T ss_dssp HHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEE-SEEEEEEEEEEETTEEEEEEEEEET------TS-EEEEEESEEEE-
T ss_pred hhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEE-CCEEEEEEEecCCCccEEEEEEeec------CCCeeEEEeCeEEEC
Confidence 011222233333344533654 778999987653 3444331 233458999999999
Q ss_pred cCCCcCCCCC-CCCC--CccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhH
Q 010217 171 MGARANTFNT-PGVE--ENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVD 247 (515)
Q Consensus 171 tG~~~~~~~i-pG~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~ 247 (515)
||..|..|.. .... +.++...++ ...... ....++|+|||||.+|.|++..|.+..
T Consensus 155 ~G~~P~iP~~~~~~~~~~~v~Hss~~--~~~~~~------------------~~~~~~V~VVGgGQSAAEi~~~L~~~~- 213 (341)
T PF13434_consen 155 TGGQPRIPEWFQDLPGSPRVFHSSEY--LSRIDQ------------------SLAGKRVAVVGGGQSAAEIFLDLLRRG- 213 (341)
T ss_dssp ---EE---GGGGGGTT-TTEEEGGGH--HHHHT-----------------------EEEEEE-SSHHHHHHHHHHHHH--
T ss_pred cCCCCCCCcchhhcCCCCCEEEehHh--hhcccc------------------ccCCCeEEEECCcHhHHHHHHHHHhCC-
Confidence 9988887643 2221 333333222 211111 135679999999999999999998863
Q ss_pred HHHHhhCcccCCCcEEEEEecccccccc---------ccHHHHH-----------HHHH---------------------
Q 010217 248 EDLFKLYPKVKDSVKITLLEAADHILNM---------FDKRITA-----------FAEE--------------------- 286 (515)
Q Consensus 248 ~~~~~~~p~~~~~~~Vtlv~~~~~~l~~---------~~~~~~~-----------~~~~--------------------- 286 (515)
+..+|+++.|++.+.+. ++++..+ .+.+
T Consensus 214 -----------~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~ 282 (341)
T PF13434_consen 214 -----------PEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDR 282 (341)
T ss_dssp -----------TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHH
T ss_pred -----------CCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHH
Confidence 23699999998866431 2222111 1111
Q ss_pred -----HhhcCCeEEEcCcEEEEEeC---Ce--EEEEecCCCceEEEecCeEEEccCC
Q 010217 287 -----KFSRDGIDVKLGSMVVKVTD---KE--IFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 287 -----~l~~~gV~v~~~~~v~~i~~---~~--v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
...+..+.++.+++|+.++. ++ +.+.....|+..++++|.||+|||+
T Consensus 283 lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 283 LYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp HHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---E
T ss_pred HHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCCc
Confidence 11234688999999999963 24 4445545677778999999999996
No 87
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.72 E-value=2.1e-15 Score=147.45 Aligned_cols=318 Identities=17% Similarity=0.197 Sum_probs=177.4
Q ss_pred CCCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCccc-ccccccc-hHHHHhhcCceEEEEEe
Q 010217 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVE-ARSIVEP-VRNIVRKKNVDICFWEA 132 (515)
Q Consensus 55 ~~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~-~~~~~~~-~~~~~~~~~i~v~~~~~ 132 (515)
....++++|||||+||++||+.|+..|++|+|+|+++.+|+.........-..+ .--++.+ +.+....-++++ +..+
T Consensus 121 ~~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l-~Tya 199 (622)
T COG1148 121 VEVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIEL-ITYA 199 (622)
T ss_pred HhhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceee-eeee
Confidence 345689999999999999999999999999999999999987321111111100 0011112 112222223333 2344
Q ss_pred EEEEEecCCCEEEEe--e--------------------------------------------------------------
Q 010217 133 ECFKIDAENKKVYCR--S-------------------------------------------------------------- 148 (515)
Q Consensus 133 ~v~~id~~~~~v~~~--~-------------------------------------------------------------- 148 (515)
+|..|+-.-..++++ .
T Consensus 200 eV~ev~G~vGnF~vki~kkpryVdd~CtgCg~C~~vCPve~~nefn~Gl~~~kAiy~p~~qaVp~~~~Id~~~c~~c~~C 279 (622)
T COG1148 200 EVEEVSGSVGNFTVKIEKKPRYVDDKCTGCGACSEVCPVEVPNEFNEGLGKRKAIYIPFPQAVPLNYNIDPKHCIECGLC 279 (622)
T ss_pred eeeeecccccceEEEEecccccccccccccccccccCCcccCcccccccccceeeeccchhhcccccccChhhhccchhh
Confidence 444433221111110 0
Q ss_pred -----CCccCC-CCCceEEeecCEEEEccCCCcCCCCCCCCCCccc-cccChhHHHHHHHHHHHHHHhcCCCC----CCH
Q 010217 149 -----SQNTNL-NGKEEFCMDYDYLVIAMGARANTFNTPGVEENCN-FLKEVEDAQRIRRNVIESFEKASLPN----LSD 217 (515)
Q Consensus 149 -----~~~~~~-~~~~~~~~~~d~lviAtG~~~~~~~ipG~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~ 217 (515)
.....+ +.+++.+++...+|+|||-.+....-.. ++.+ .+.++-...++.+.+.. +-|+ +-+
T Consensus 280 ~~ac~~~av~~~q~~e~ve~~vGaIIvAtGy~~~Da~~k~--EyGYG~~~nVIT~lElErml~~-----~GPT~Gkvlrp 352 (622)
T COG1148 280 EKACPNEAVDLNQEPEEVELEVGAIIVATGYKPFDATRKE--EYGYGKYPNVITNLELERMLNP-----NGPTGGKVLRP 352 (622)
T ss_pred hhcCCccccccCCCCcEEEEEeceEEEEccccccCcchhh--hcCCCCCcchhhHHHHHHHhcc-----CCCCCceEEec
Confidence 000001 1234568889999999998876543221 1111 11222223333322210 0010 001
Q ss_pred HHHhccceEEEE---CCCh------hHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccccccHHHHHHHHHHh
Q 010217 218 EERKRILHFVIV---GGGP------TGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKF 288 (515)
Q Consensus 218 ~~~~~~~~vvVv---GgG~------~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l 288 (515)
.+-..+|+|+.| |+-. --..+..+.+-.-+..+...||+ .+|++++..-+....+ ..++..+.-
T Consensus 353 Sdg~~pKrVaFIqCVGSRD~~~~n~YCSrvCCm~slKqA~~Ike~~Pd----~~v~I~YmDiRafG~~---yEefY~~~Q 425 (622)
T COG1148 353 SDGKPPKRVAFIQCVGSRDFQVGNPYCSRVCCMVSLKQAQLIKERYPD----TDVTIYYMDIRAFGKD---YEEFYVRSQ 425 (622)
T ss_pred CCCCCCceEEEEEEecCcCcccCChhhHHHHHHHHHhhhhhhhhcCCC----cceeEEEEEeeccCcc---HHHHHHhhh
Confidence 112356788875 5433 11222222222223455667775 7899998877655433 233333444
Q ss_pred hcCCeEEEcCcE--EEEEeCCe--EEEEecCCCceEEEecCeEEEccCCCCccchHHHHHHhCC--CCCCceeeC-CCcc
Q 010217 289 SRDGIDVKLGSM--VVKVTDKE--IFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--TNRRALATD-EWLR 361 (515)
Q Consensus 289 ~~~gV~v~~~~~--v~~i~~~~--v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~~~--~~~g~i~vd-~~l~ 361 (515)
++.||+++.+.. +.+..++. |...++-.|+..++++|+||+++|+.+.+..+.+.+-+|+ +++|++... +.++
T Consensus 426 ~~~gV~fIRGrvaei~e~p~~~l~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~ 505 (622)
T COG1148 426 EDYGVRFIRGRVAEIAEFPKKKLIVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLR 505 (622)
T ss_pred hhhchhhhcCChHHheeCCCCeeEEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcc
Confidence 477999988742 22323333 4455566788888999999999998888888888888888 788988765 5554
Q ss_pred c--cCCCCEEEeccccccCccchHHHHHHH
Q 010217 362 V--EGSDSIYALGDCATVNQRRVMEDIAAI 389 (515)
Q Consensus 362 t--~~~~~IyA~GD~~~~~~~~~~~~~~~~ 389 (515)
. ++.+|||.+|-|.+. ..+...++++
T Consensus 506 pv~s~~~GIflAG~aqgP--kdI~~siaqa 533 (622)
T COG1148 506 PVDSNRDGIFLAGAAQGP--KDIADSIAQA 533 (622)
T ss_pred cccccCCcEEEeecccCC--ccHHHHHHHh
Confidence 2 267899999977762 3344444333
No 88
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.71 E-value=1.2e-16 Score=161.69 Aligned_cols=291 Identities=12% Similarity=0.132 Sum_probs=156.3
Q ss_pred CCCCeEEEECCcHHHHHHHHhcc-CCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEE
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLN-NPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAEC 134 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~-~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v 134 (515)
..+++|+||||||||++||.+|. +.|++|+|+|+.+..++. +...+++.....+.+...+...+...++. +. +.+
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGL-vR~GVaPdh~~~k~v~~~f~~~~~~~~v~--f~-gnv 112 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGL-IRYGVAPDHIHVKNTYKTFDPVFLSPNYR--FF-GNV 112 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccE-EEEeCCCCCccHHHHHHHHHHHHhhCCeE--EE-eee
Confidence 34689999999999999999765 679999999999988764 22334443333344555555555555543 43 111
Q ss_pred EEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCCCC----------CCC-----CccccccChhHHHHH
Q 010217 135 FKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTP----------GVE-----ENCNFLKEVEDAQRI 199 (515)
Q Consensus 135 ~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ip----------G~~-----~~~~~~~~~~~a~~~ 199 (515)
.+ +..++++. ....||+||+|+|+.+..++++ |.+ .+++. +..+
T Consensus 113 -~V---G~Dvt~ee-----------L~~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~------A~df 171 (506)
T PTZ00188 113 -HV---GVDLKMEE-----------LRNHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIFH------ARDL 171 (506)
T ss_pred -Ee---cCccCHHH-----------HHhcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEEe------hheE
Confidence 11 11222221 1347999999999986543321 321 11111 1111
Q ss_pred HHHHHHHH------Hh-cCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHh-----hCcc-c--CCCcEEE
Q 010217 200 RRNVIESF------EK-ASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFK-----LYPK-V--KDSVKIT 264 (515)
Q Consensus 200 ~~~~~~~~------~~-~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~-----~~p~-~--~~~~~Vt 264 (515)
....+... .. +.++.+ ...++++|||.|++++++|..|..- .+++.+ ..-+ + ..-.+|+
T Consensus 172 V~WYNg~p~~~~~~~~~ayL~p~-----~~~~~vvVIG~GNVAlDvARiL~~~-~d~L~~TDI~~~aL~~L~~s~v~~V~ 245 (506)
T PTZ00188 172 IYFYNNMYNDVRCKAVDNYLNSF-----ENFTTSIIIGNGNVSLDIARILIKS-PDDLSKTDISSDYLKVIKRHNIKHIY 245 (506)
T ss_pred EEeecCCCCcccccccccccccc-----CCCCcEEEECCCchHHHHHHHHccC-HHHhhcCCCcHHHHHHHHhCCCcEEE
Confidence 00000000 00 001111 0345899999999999999987532 122111 0000 0 0123677
Q ss_pred EEecccccc--------------cc----cc-HH-----------------------HHHHHHHHhh----------cCC
Q 010217 265 LLEAADHIL--------------NM----FD-KR-----------------------ITAFAEEKFS----------RDG 292 (515)
Q Consensus 265 lv~~~~~~l--------------~~----~~-~~-----------------------~~~~~~~~l~----------~~g 292 (515)
|+-|+...- +. ++ .+ ..+.+.+... .+.
T Consensus 246 ivgRRGp~qaaFT~kElrEL~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~ 325 (506)
T PTZ00188 246 IVGRRGFWQSSFTNAELRELISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKI 325 (506)
T ss_pred EEEecCHHHhCCCHHHHHHHhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceE
Confidence 776554210 00 00 00 1112222221 245
Q ss_pred eEEEcCcEEEEEeC--C---eEEEEec--------CCCceEEEecCeEEEccCCCCccchHHHHHHhCCCCCCceeeCCC
Q 010217 293 IDVKLGSMVVKVTD--K---EIFTKVR--------GNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEW 359 (515)
Q Consensus 293 V~v~~~~~v~~i~~--~---~v~~~~~--------~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~~~~~~g~i~vd~~ 359 (515)
|.+++...+.+|.+ + ++.+..+ .+|+..+++||+|+-|+|+...|.. .+ ..+ +. +.. ..
T Consensus 326 i~l~F~~sP~ei~~~~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p~~-g~----pFd-~~-~~n-~~ 397 (506)
T PTZ00188 326 IEFIFYFEIRQIRPIDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSNFA-EN----LYN-QS-VQM-FK 397 (506)
T ss_pred EEEEccCCceEEECCCCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCCCC-CC----Ccc-cc-CCC-CC
Confidence 77788888888863 2 2333321 2577778999999999999777644 22 112 11 211 11
Q ss_pred ccc-cCCCCEEEeccccccCccchHHH
Q 010217 360 LRV-EGSDSIYALGDCATVNQRRVMED 385 (515)
Q Consensus 360 l~t-~~~~~IyA~GD~~~~~~~~~~~~ 385 (515)
.++ ...|++|++|-+-.+|..-+...
T Consensus 398 grv~~~~~g~Y~~GWiKrGP~GvIgtn 424 (506)
T PTZ00188 398 EDIGQHKFAIFKAGWFDKGPKGNIASQ 424 (506)
T ss_pred CcccCCCCCcEEeeecCcCCCceeccC
Confidence 221 03699999999999887655443
No 89
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.69 E-value=2.8e-16 Score=159.21 Aligned_cols=221 Identities=16% Similarity=0.202 Sum_probs=139.8
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccc--------h-h-----------------cc-----
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLP--------S-V-----------------TC----- 104 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~--------~-~-----------------~~----- 104 (515)
.+.++|+|||||+|||++|+.|.+.|++|+++|+.+.+|+..... . + +.
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~ 83 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDP 83 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCc
Confidence 347899999999999999999999999999999998887753222 1 0 00
Q ss_pred Cc-ccccccccchHHHHhhcCc--eEEEEEeEEEEEecCC-CE--EEEeeCCccCCCCCceEEeecCEEEEccCCC--cC
Q 010217 105 GT-VEARSIVEPVRNIVRKKNV--DICFWEAECFKIDAEN-KK--VYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR--AN 176 (515)
Q Consensus 105 g~-~~~~~~~~~~~~~~~~~~i--~v~~~~~~v~~id~~~-~~--v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~--~~ 176 (515)
.. ...+++.++++.+++.+++ .++ .+.+|..++... +. |...+.. +. ....-||.|++|||-. |+
T Consensus 84 ~~~p~~~e~~~YL~~yA~~F~l~~~i~-f~~~v~~v~~~~~gkW~V~~~~~~-----~~-~~~~ifd~VvVctGh~~~P~ 156 (448)
T KOG1399|consen 84 RYFPSHREVLEYLRDYAKHFDLLKMIN-FNTEVVRVDSIDKGKWRVTTKDNG-----TQ-IEEEIFDAVVVCTGHYVEPR 156 (448)
T ss_pred ccCCCHHHHHHHHHHHHHhcChhhheE-ecccEEEEeeccCCceeEEEecCC-----cc-eeEEEeeEEEEcccCcCCCC
Confidence 00 1123667778888888875 343 366677777766 33 4444322 11 3478899999999986 78
Q ss_pred CCCCCCCC----Cc-cccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHH
Q 010217 177 TFNTPGVE----EN-CNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLF 251 (515)
Q Consensus 177 ~~~ipG~~----~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~ 251 (515)
.|.+||.. .+ .+..+++. ..+..++|+|+|||+|++|+|++.+++...
T Consensus 157 ~P~~~g~~~~~f~G~~iHS~~Yk----------------------~~e~f~~k~VlVIG~g~SG~DIs~d~~~~a----- 209 (448)
T KOG1399|consen 157 IPQIPGPGIESFKGKIIHSHDYK----------------------SPEKFRDKVVLVVGCGNSGMDISLDLLRVA----- 209 (448)
T ss_pred CCcCCCCchhhcCCcceehhhcc----------------------CcccccCceEEEECCCccHHHHHHHHHHhc-----
Confidence 88888732 11 11111110 112247789999999999999999988753
Q ss_pred hhCcccCCCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEeCCeEEEEecCCCceEEEecCeEEEcc
Q 010217 252 KLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWST 331 (515)
Q Consensus 252 ~~~p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~v~~~~~~~G~~~~i~~D~vi~a~ 331 (515)
.+|++..+ .-.+.... ......++..+.. |+.+.+++..+.. ++.. ..+|.+|+||
T Consensus 210 ---------k~v~~~~~-~~~~~~~~--------~~~~~~~~~~~~~--i~~~~e~~~~~~~--~~~~--~~~D~ii~ct 265 (448)
T KOG1399|consen 210 ---------KEVHLSVV-SPKVHVEP--------PEILGENLWQVPS--IKSFTEDGSVFEK--GGPV--ERVDRIIFCT 265 (448)
T ss_pred ---------cCcceeee-cccccccc--------cceeecceEEccc--cccccCcceEEEc--Ccee--EEeeeEEEee
Confidence 45666543 10000000 0001113333322 6666677766654 4553 7899999999
Q ss_pred CCC
Q 010217 332 GIA 334 (515)
Q Consensus 332 G~~ 334 (515)
|+.
T Consensus 266 gy~ 268 (448)
T KOG1399|consen 266 GYK 268 (448)
T ss_pred eeE
Confidence 963
No 90
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.68 E-value=4.8e-16 Score=147.72 Aligned_cols=303 Identities=18% Similarity=0.224 Sum_probs=174.2
Q ss_pred CCCeEEEECCcHHHHHHHHhccC--CCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEE-EeE
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNN--PSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFW-EAE 133 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~--~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~-~~~ 133 (515)
..++|.|||+||||+.+|..|.+ .++.|+|+|+.+...+ ...+++++...+...+...+...++... +.|. +-+
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFG-LvRyGVAPDHpEvKnvintFt~~aE~~r--fsf~gNv~ 95 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFG-LVRYGVAPDHPEVKNVINTFTKTAEHER--FSFFGNVK 95 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccc-eeeeccCCCCcchhhHHHHHHHHhhccc--eEEEecce
Confidence 35699999999999999999875 5789999999986443 2344555655555666666777666654 3332 222
Q ss_pred EEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCC-cCCCCCCCCC-CccccccChhHHHHHHHHHHHHHHhcC
Q 010217 134 CFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR-ANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKAS 211 (515)
Q Consensus 134 v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~-~~~~~ipG~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~ 211 (515)
+ ++.+.+.. .+-.||++|||.|+. ++.+.|||.+ .+++ .+..+......
T Consensus 96 v------G~dvsl~e-----------L~~~ydavvLaYGa~~dR~L~IPGe~l~~V~------Sarefv~Wyng------ 146 (468)
T KOG1800|consen 96 V------GRDVSLKE-----------LTDNYDAVVLAYGADGDRRLDIPGEELSGVI------SAREFVGWYNG------ 146 (468)
T ss_pred e------cccccHHH-----------HhhcccEEEEEecCCCCcccCCCCcccccce------ehhhhhhhccC------
Confidence 2 22344332 256799999999986 6889999976 3333 22222222211
Q ss_pred CCCCC-HHHHhccceEEEECCChhHHHHHHHHHHhhHH-----HHHhhCcc---cCCCcEEEEEecccccccccc-----
Q 010217 212 LPNLS-DEERKRILHFVIVGGGPTGVEFAAELHDFVDE-----DLFKLYPK---VKDSVKITLLEAADHILNMFD----- 277 (515)
Q Consensus 212 ~~~~~-~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~-----~~~~~~p~---~~~~~~Vtlv~~~~~~l~~~~----- 277 (515)
+|... .+.+-.+.+|+|||.|++++++|..|...-.. |+....-+ ..+-.+|+|+-|+.-.-..|-
T Consensus 147 ~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKELR 226 (468)
T KOG1800|consen 147 LPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELR 226 (468)
T ss_pred CCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHHH
Confidence 11111 00112467999999999999999998643211 12111111 112357888877653211110
Q ss_pred ---------------------------------HHHHHHHHHHhhc---------CCeE---EEcCcEEEEEeCC-----
Q 010217 278 ---------------------------------KRITAFAEEKFSR---------DGID---VKLGSMVVKVTDK----- 307 (515)
Q Consensus 278 ---------------------------------~~~~~~~~~~l~~---------~gV~---v~~~~~v~~i~~~----- 307 (515)
+++.+.+.+.+.+ .+.+ +.+.-.+.+|.++
T Consensus 227 E~~~l~~~~~r~~~~~~~~~~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~~~~~~v~ 306 (468)
T KOG1800|consen 227 EVLELPGARPRLDPVDFSGKWMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAILPGADGVS 306 (468)
T ss_pred HHhCCCCcccccCchhccceeCCcccccccCchhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCHHHhccCccccc
Confidence 0111111111111 0111 0011111111111
Q ss_pred eEEEE--------ecCCCceEEEecCeEEEccCCCCccchHHHHHHhCCCCCCceeeCCCcccc---CCCCEEEeccccc
Q 010217 308 EIFTK--------VRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEWLRVE---GSDSIYALGDCAT 376 (515)
Q Consensus 308 ~v~~~--------~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~~~~~~g~i~vd~~l~t~---~~~~IyA~GD~~~ 376 (515)
++.+. ....|...+++|++++.++|+...|... .++.+.+.+|+-|.+.++. -.|++|++|-|..
T Consensus 307 ~~~~~~t~l~~~~~~~tg~~e~~p~~l~i~sIGYks~pv~~----gipFd~~kgvv~n~~GrV~~s~~~pglY~sGW~k~ 382 (468)
T KOG1800|consen 307 GVRFQVTILEGTQAVPTGAFETLPCGLLIRSIGYKSVPVDS----GIPFDDKKGVVPNVNGRVLVSGCSPGLYASGWVKH 382 (468)
T ss_pred ceEEEeeeehhhcccccCceEeeccceeEeeeeecccccCC----CCCcccccCcccCCCceEEeeccCCceEEEeeecc
Confidence 11110 1234666789999999999987776542 2333444445555554441 2499999999999
Q ss_pred cCccchHHHHHHHHHhhcc
Q 010217 377 VNQRRVMEDIAAIFSKADK 395 (515)
Q Consensus 377 ~~~~~~~~~~~~~~~~a~~ 395 (515)
+|...+++.+...+..++.
T Consensus 383 GP~GvIattm~dAf~v~d~ 401 (468)
T KOG1800|consen 383 GPTGVIATTMQDAFEVADT 401 (468)
T ss_pred CCcceeeehhhhHHHHHHH
Confidence 9998888888888877654
No 91
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.67 E-value=9.5e-16 Score=157.66 Aligned_cols=178 Identities=17% Similarity=0.275 Sum_probs=117.0
Q ss_pred CCCCCeEEEECCcHHHHHHHHhccCCCCe-EEEEcCCCCCccCCcc---chh--------------cc---Ccccc-ccc
Q 010217 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYD-VQVISPRNYFAFTPLL---PSV--------------TC---GTVEA-RSI 112 (515)
Q Consensus 55 ~~~~~~VvIIGgG~AGlsaA~~L~~~g~~-V~vie~~~~~~~~~~~---~~~--------------~~---g~~~~-~~~ 112 (515)
.....+|+|||||++||++|++|.+.|.. ++|+|++...|++... ++. +. ..... ..+
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~ 84 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEI 84 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccH
Confidence 34578999999999999999999999998 9999999877755321 111 11 01111 124
Q ss_pred ccchHHHHhhcCceEEE-EEeEEEEEe--cCCCEEEEeeCCccCCCCCceEEeecCEEEEccCC--CcCCCCCCCCCCcc
Q 010217 113 VEPVRNIVRKKNVDICF-WEAECFKID--AENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGA--RANTFNTPGVEENC 187 (515)
Q Consensus 113 ~~~~~~~~~~~~i~v~~-~~~~v~~id--~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~--~~~~~~ipG~~~~~ 187 (515)
..++...+.++++..++ ++..|..++ .+.+..++.... +... ++.+|.||+|||- .|+.|.++|.++..
T Consensus 85 ~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~-----~~~~-~~~a~~vV~ATG~~~~P~iP~~~G~~~f~ 158 (443)
T COG2072 85 KDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSD-----GGTG-ELTADFVVVATGHLSEPYIPDFAGLDEFK 158 (443)
T ss_pred HHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcC-----CCee-eEecCEEEEeecCCCCCCCCCCCCccCCC
Confidence 55566777777753321 233333344 444444444322 2211 2789999999994 68999999987421
Q ss_pred -ccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEE
Q 010217 188 -NFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLL 266 (515)
Q Consensus 188 -~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv 266 (515)
..+++. .+ ++.+..++|+|+|||+|.+|+++|.+|.+. +.+||++
T Consensus 159 g~~~HS~-----------------~~---~~~~~~~GKrV~VIG~GaSA~di~~~l~~~--------------ga~vt~~ 204 (443)
T COG2072 159 GRILHSA-----------------DW---PNPEDLRGKRVLVIGAGASAVDIAPELAEV--------------GASVTLS 204 (443)
T ss_pred ceEEchh-----------------cC---CCccccCCCeEEEECCCccHHHHHHHHHhc--------------CCeeEEE
Confidence 111111 01 111225889999999999999999999985 5799999
Q ss_pred eccccc
Q 010217 267 EAADHI 272 (515)
Q Consensus 267 ~~~~~~ 272 (515)
.|.+..
T Consensus 205 qRs~~~ 210 (443)
T COG2072 205 QRSPPH 210 (443)
T ss_pred ecCCCc
Confidence 888753
No 92
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.66 E-value=2.1e-14 Score=138.79 Aligned_cols=282 Identities=15% Similarity=0.165 Sum_probs=169.9
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCC-CCeEEEEcCCCCCccCC--ccchhccC------c---ccc--------------
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNP-SYDVQVISPRNYFAFTP--LLPSVTCG------T---VEA-------------- 109 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~-g~~V~vie~~~~~~~~~--~~~~~~~g------~---~~~-------------- 109 (515)
....|++.||-||+-|+.|..|... +.++..+|+.+.|.|+| ++++..-. . .++
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h~ 82 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEHG 82 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHcc
Confidence 4568999999999999999999854 47899999999999987 33332100 0 000
Q ss_pred ---------------cccccchHHHHhhcCceEEEEEeEEE---EEecCCCEEEEeeCCccCCCCCceEEeecCEEEEcc
Q 010217 110 ---------------RSIVEPVRNIVRKKNVDICFWEAECF---KIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAM 171 (515)
Q Consensus 110 ---------------~~~~~~~~~~~~~~~i~v~~~~~~v~---~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAt 171 (515)
.+.. .+-.+....--.++| ..+|+ .++.+.......... ++ ..+.++.|||++
T Consensus 83 RLy~Fl~~e~f~i~R~Ey~-dY~~Waa~~l~~~rf-g~~V~~i~~~~~d~~~~~~~~t~-----~~--~~y~ar~lVlg~ 153 (436)
T COG3486 83 RLYEFLNYETFHIPRREYN-DYCQWAASQLPSLRF-GEEVTDISSLDGDAVVRLFVVTA-----NG--TVYRARNLVLGV 153 (436)
T ss_pred hHhhhhhhhcccccHHHHH-HHHHHHHhhCCcccc-CCeeccccccCCcceeEEEEEcC-----CC--cEEEeeeEEEcc
Confidence 0111 111222222123443 66777 455444332111111 11 278999999999
Q ss_pred CCCcCCCC-CCCCC-CccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHH
Q 010217 172 GARANTFN-TPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDED 249 (515)
Q Consensus 172 G~~~~~~~-ipG~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~ 249 (515)
|..|..|+ +..+. +.++. +.+-+.+.-+. ...++|+|||+|.+|.|+-..|..-
T Consensus 154 G~~P~IP~~f~~l~~~~vfH--ss~~~~~~~~~------------------~~~~~V~ViG~GQSAAEi~~~Ll~~---- 209 (436)
T COG3486 154 GTQPYIPPCFRSLIGERVFH--SSEYLERHPEL------------------LQKRSVTVIGSGQSAAEIFLDLLNS---- 209 (436)
T ss_pred CCCcCCChHHhCcCccceee--hHHHHHhhHHh------------------hcCceEEEEcCCccHHHHHHHHHhC----
Confidence 99998874 33332 23332 22222111110 1233599999999999999888653
Q ss_pred HHhhCcccCCCcEEEEEecccccccc---------ccHHHHHHH-----------H-------------------HHh--
Q 010217 250 LFKLYPKVKDSVKITLLEAADHILNM---------FDKRITAFA-----------E-------------------EKF-- 288 (515)
Q Consensus 250 ~~~~~p~~~~~~~Vtlv~~~~~~l~~---------~~~~~~~~~-----------~-------------------~~l-- 288 (515)
++. ...++.|+.|+..++|. |.++..+++ . +.|
T Consensus 210 ----~~~--~~~~l~witR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~ 283 (436)
T COG3486 210 ----QPP--QDYQLNWITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYE 283 (436)
T ss_pred ----CCC--cCccceeeeccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHH
Confidence 122 23478999999877652 122221111 0 011
Q ss_pred -----hcCCeEEEcCcEEEEEeCCe-----EEEEecCCCceEEEecCeEEEccCCC-Ccc-chHHHHHHhCCCCCCceee
Q 010217 289 -----SRDGIDVKLGSMVVKVTDKE-----IFTKVRGNGETSSMPYGMVVWSTGIA-PHA-IIKDFMKQVGQTNRRALAT 356 (515)
Q Consensus 289 -----~~~gV~v~~~~~v~~i~~~~-----v~~~~~~~G~~~~i~~D~vi~a~G~~-~~p-~~~~l~~~~~~~~~g~i~v 356 (515)
.+.+|.++.++++..++..+ +.+....+|+..+++.|.||+|||+. ..| .+..+.+.+..+++|...|
T Consensus 284 ~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I 363 (436)
T COG3486 284 QSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVI 363 (436)
T ss_pred HHhcCCCCCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEe
Confidence 24578999999999998532 34444456777789999999999985 233 2222222333378899999
Q ss_pred CCCccccCCC----CEEEeccccc
Q 010217 357 DEWLRVEGSD----SIYALGDCAT 376 (515)
Q Consensus 357 d~~l~t~~~~----~IyA~GD~~~ 376 (515)
+..++....+ .||+.|-+..
T Consensus 364 ~~dY~v~~~~~~~~~ifvqn~e~h 387 (436)
T COG3486 364 GRDYRVLWDGPGKGRIFVQNAELH 387 (436)
T ss_pred cCceeeecCCCCcceEEEeccccc
Confidence 9887763322 5999887655
No 93
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.53 E-value=1.7e-13 Score=139.11 Aligned_cols=96 Identities=15% Similarity=0.081 Sum_probs=74.6
Q ss_pred EEEECCChhHHHHH-HHHHHhhHHHHHhhCcccCCCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEE
Q 010217 226 FVIVGGGPTGVEFA-AELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKV 304 (515)
Q Consensus 226 vvVvGgG~~g~E~A-~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i 304 (515)
=+|++.+.+|+|.+ ..+.++... -|++|+++...+..++.+ ++.+.+.+.+++.|+++++++.|.++
T Consensus 218 ~~V~~PavIGle~a~~v~~~L~~~----------LG~~V~~vp~~ppslpG~--rL~~aL~~~l~~~Gv~I~~g~~V~~v 285 (422)
T PRK05329 218 EAVLLPAVLGLDDDAAVLAELEEA----------LGCPVFELPTLPPSVPGL--RLQNALRRAFERLGGRIMPGDEVLGA 285 (422)
T ss_pred CEEEECceecCCChHHHHHHHHHH----------HCCCEEEeCCCCCCCchH--HHHHHHHHHHHhCCCEEEeCCEEEEE
Confidence 37899999999999 555433111 178999999998888764 68888999999999999999999998
Q ss_pred eC--CeEEEEecCCCceEEEecCeEEEccCC
Q 010217 305 TD--KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 305 ~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
+. +++..+...+|+...+++|.||+|+|.
T Consensus 286 ~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGr 316 (422)
T PRK05329 286 EFEGGRVTAVWTRNHGDIPLRARHFVLATGS 316 (422)
T ss_pred EEeCCEEEEEEeeCCceEEEECCEEEEeCCC
Confidence 63 445544334566557999999999994
No 94
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.33 E-value=1.5e-11 Score=95.31 Aligned_cols=68 Identities=29% Similarity=0.573 Sum_probs=64.7
Q ss_pred eEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEE
Q 010217 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKV 304 (515)
Q Consensus 225 ~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i 304 (515)
+|+|||||++|+|+|..|.++ +.+|+++++.+.+++.+++++.+.+++.|++.||++++++.++++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~--------------g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i 66 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL--------------GKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEI 66 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT--------------TSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHh--------------CcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEE
Confidence 689999999999999999986 689999999999999999999999999999999999999999999
Q ss_pred eC
Q 010217 305 TD 306 (515)
Q Consensus 305 ~~ 306 (515)
+.
T Consensus 67 ~~ 68 (80)
T PF00070_consen 67 EK 68 (80)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 95
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.06 E-value=9.7e-10 Score=107.06 Aligned_cols=111 Identities=18% Similarity=0.234 Sum_probs=77.4
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccc--------------hh--------------------
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLP--------------SV-------------------- 102 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~--------------~~-------------------- 102 (515)
+.++|+|||||||||.||..+++.|++|+|||+.+.++-..++. .+
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 35799999999999999999999999999999886543211000 00
Q ss_pred -----------------ccCccc-----ccccccchHHHHhhcCceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceE
Q 010217 103 -----------------TCGTVE-----ARSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEF 160 (515)
Q Consensus 103 -----------------~~g~~~-----~~~~~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~ 160 (515)
..|.+- ...+++-+...+++.|++++ .+.+|.+|+.++..+.+.... +.
T Consensus 82 ~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~-~~~~v~~v~~~~~~f~l~t~~------g~-- 152 (408)
T COG2081 82 EDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIR-TRSRVSSVEKDDSGFRLDTSS------GE-- 152 (408)
T ss_pred HHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEE-ecceEEeEEecCceEEEEcCC------CC--
Confidence 011111 12344555666788899984 688999999887655555432 11
Q ss_pred EeecCEEEEccC--CCcC
Q 010217 161 CMDYDYLVIAMG--ARAN 176 (515)
Q Consensus 161 ~~~~d~lviAtG--~~~~ 176 (515)
++.+|.|||||| |.|.
T Consensus 153 ~i~~d~lilAtGG~S~P~ 170 (408)
T COG2081 153 TVKCDSLILATGGKSWPK 170 (408)
T ss_pred EEEccEEEEecCCcCCCC
Confidence 799999999999 5563
No 96
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.99 E-value=3.9e-08 Score=98.42 Aligned_cols=175 Identities=18% Similarity=0.208 Sum_probs=95.6
Q ss_pred CCeEEEECCcHHHHHHHHhccC---CCCeEEEEcCCCCCccC----Cccch----hc-------------------cCc-
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNN---PSYDVQVISPRNYFAFT----PLLPS----VT-------------------CGT- 106 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~---~g~~V~vie~~~~~~~~----~~~~~----~~-------------------~g~- 106 (515)
+++|+|||+|++|+.+|.+|.+ ....|.|||+.+.+|.- ...+. +. .+.
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~ 80 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL 80 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhcc
Confidence 4799999999999999999972 22239999998776531 11100 00 000
Q ss_pred ---cc------------ccc-cccch----HHHHhhcCc-eEEEEEeEEEEEecC--CCEEEEeeCCccCCCCCceEEee
Q 010217 107 ---VE------------ARS-IVEPV----RNIVRKKNV-DICFWEAECFKIDAE--NKKVYCRSSQNTNLNGKEEFCMD 163 (515)
Q Consensus 107 ---~~------------~~~-~~~~~----~~~~~~~~i-~v~~~~~~v~~id~~--~~~v~~~~~~~~~~~~~~~~~~~ 163 (515)
.+ ++. +-+++ ..+++.... .+.+++.+++++... .....+... ++ ....
T Consensus 81 ~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~------~g--~~~~ 152 (474)
T COG4529 81 QRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTA------DG--PSEI 152 (474)
T ss_pred cccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecC------CC--Ceee
Confidence 00 000 00111 222222221 266778888887766 222222211 11 1778
Q ss_pred cCEEEEccCCCcCCCCCC--CCCCccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHH
Q 010217 164 YDYLVIAMGARANTFNTP--GVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAE 241 (515)
Q Consensus 164 ~d~lviAtG~~~~~~~ip--G~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~ 241 (515)
+|-+|+|||..+-.++.- ...+...++.+...+ ..+..+ ...-+|+|+|.|.+.++....
T Consensus 153 ad~~Vlatgh~~~~~~~~~~~~~~~~~~ia~~~~~-------------~~ld~v-----~~~drVli~GsgLt~~D~v~~ 214 (474)
T COG4529 153 ADIIVLATGHSAPPADPAARDLKGSPRLIADPYPA-------------NALDGV-----DADDRVLIVGSGLTSIDQVLV 214 (474)
T ss_pred eeEEEEeccCCCCCcchhhhccCCCcceeccccCC-------------cccccc-----cCCCceEEecCCchhHHHHHH
Confidence 999999999754333220 000111112111111 111111 233479999999999999999
Q ss_pred HHHhhHHHHHhhCcccCCCcEEEEEeccc
Q 010217 242 LHDFVDEDLFKLYPKVKDSVKITLLEAAD 270 (515)
Q Consensus 242 l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~ 270 (515)
+.+.+. ...||++.|+.
T Consensus 215 l~~~gh------------~g~It~iSRrG 231 (474)
T COG4529 215 LRRRGH------------KGPITAISRRG 231 (474)
T ss_pred HhccCC------------ccceEEEeccc
Confidence 988652 35788887765
No 97
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.90 E-value=1.2e-08 Score=103.59 Aligned_cols=81 Identities=16% Similarity=0.272 Sum_probs=48.9
Q ss_pred Eeccccccccc--cHHHHHHHHHHhhcCCeEEEcCcEEEEEe--CCeEEEEecCCCceEEEecCeEEEccCCCCccch--
Q 010217 266 LEAADHILNMF--DKRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAII-- 339 (515)
Q Consensus 266 v~~~~~~l~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~-- 339 (515)
++...++.|.- ...+.+.+.+.+++.||+++++++|.++. ++++..+...+++ ++.||.||+|+|-...|.+
T Consensus 95 ~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~--~~~a~~vILAtGG~S~p~~GS 172 (409)
T PF03486_consen 95 IEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGG--EYEADAVILATGGKSYPKTGS 172 (409)
T ss_dssp E-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTE--EEEESEEEE----SSSGGGT-
T ss_pred EcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcc--cccCCEEEEecCCCCccccCC
Confidence 34455555542 35677888899999999999999999995 4553333333455 4999999999996555643
Q ss_pred ----HHHHHHhCC
Q 010217 340 ----KDFMKQVGQ 348 (515)
Q Consensus 340 ----~~l~~~~~~ 348 (515)
-.+++++|.
T Consensus 173 ~G~gy~~a~~lGh 185 (409)
T PF03486_consen 173 DGSGYRIAKKLGH 185 (409)
T ss_dssp SSHHHHHHHHTT-
T ss_pred CcHHHHHHHHCCC
Confidence 256777765
No 98
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.89 E-value=1.1e-07 Score=95.77 Aligned_cols=91 Identities=15% Similarity=0.304 Sum_probs=58.8
Q ss_pred HHHhhCcccCCCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEe--CCeEEEEecCCCceEEEecCe
Q 010217 249 DLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGM 326 (515)
Q Consensus 249 ~~~~~~p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~~~v~~~~~~~G~~~~i~~D~ 326 (515)
++.+.+|.+.+...-.++......+ .+..+...+.+.+++.|++++.+++|+++. ++.+..+.+.+|+ +.+|.
T Consensus 120 ~~~~~~p~~~~~~~~~~~~~~~g~i--~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~---i~ad~ 194 (358)
T PF01266_consen 120 ELRELFPFLNPRIEGGVFFPEGGVI--DPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE---IRADR 194 (358)
T ss_dssp HHHHHSTTSSTTTEEEEEETTEEEE--EHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE---EEECE
T ss_pred hhhhhhcccccchhhhhcccccccc--cccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc---cccce
Confidence 3445566655444555555544322 245677888888899999999999999997 4566645556664 89999
Q ss_pred EEEccCCCCccchHHHHHHhCC
Q 010217 327 VVWSTGIAPHAIIKDFMKQVGQ 348 (515)
Q Consensus 327 vi~a~G~~~~p~~~~l~~~~~~ 348 (515)
||+|+|. ++..++..++.
T Consensus 195 vV~a~G~----~s~~l~~~~~~ 212 (358)
T PF01266_consen 195 VVLAAGA----WSPQLLPLLGL 212 (358)
T ss_dssp EEE--GG----GHHHHHHTTTT
T ss_pred eEecccc----cceeeeecccc
Confidence 9999993 34456666543
No 99
>PRK09897 hypothetical protein; Provisional
Probab=98.88 E-value=2.2e-08 Score=104.90 Aligned_cols=158 Identities=15% Similarity=0.181 Sum_probs=89.3
Q ss_pred CCeEEEECCcHHHHHHHHhccCC--CCeEEEEcCCCCCc----cCC------cc-c---------------hhc------
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNP--SYDVQVISPRNYFA----FTP------LL-P---------------SVT------ 103 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~--g~~V~vie~~~~~~----~~~------~~-~---------------~~~------ 103 (515)
+++|+||||||+|+++|.+|.+. ..+|+|||++..+| |.+ ++ + +..
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~ 80 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH 80 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence 36899999999999999999743 46899999976554 111 00 0 000
Q ss_pred ------------cCcccccccc-cchHH-------HHhhcCceEEE-EEeEEEEEecCCCEEEEeeCCccCCCCCceEEe
Q 010217 104 ------------CGTVEARSIV-EPVRN-------IVRKKNVDICF-WEAECFKIDAENKKVYCRSSQNTNLNGKEEFCM 162 (515)
Q Consensus 104 ------------~g~~~~~~~~-~~~~~-------~~~~~~i~v~~-~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~ 162 (515)
.+...++.+. .+++. .+...|+.+.+ ...+|++|+..+..+.+.... ++ ..+
T Consensus 81 ~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~-----gg--~~i 153 (534)
T PRK09897 81 LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQ-----DL--PSE 153 (534)
T ss_pred HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECC-----CC--eEE
Confidence 0011112111 11222 22233422333 356899998877766665321 11 268
Q ss_pred ecCEEEEccCCCcCCCCCCCCCCccccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHH
Q 010217 163 DYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAEL 242 (515)
Q Consensus 163 ~~d~lviAtG~~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l 242 (515)
.+|+||+|||..+... .++. . .++.+..+... . ... .+.+|+|+|.|.++++++..|
T Consensus 154 ~aD~VVLAtGh~~p~~-~~~~-~--~yi~~pw~~~~-----~-----~~i---------~~~~V~I~GtGLt~iD~v~~L 210 (534)
T PRK09897 154 TFDLAVIATGHVWPDE-EEAT-R--TYFPSPWSGLM-----E-----AKV---------DACNVGIMGTSLSGLDAAMAV 210 (534)
T ss_pred EcCEEEECCCCCCCCC-Chhh-c--cccCCCCcchh-----h-----cCC---------CCCeEEEECCCHHHHHHHHHH
Confidence 9999999999743111 1111 1 11111111100 0 000 235999999999999999999
Q ss_pred HHh
Q 010217 243 HDF 245 (515)
Q Consensus 243 ~~~ 245 (515)
...
T Consensus 211 t~~ 213 (534)
T PRK09897 211 AIQ 213 (534)
T ss_pred Hhc
Confidence 854
No 100
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.85 E-value=6.2e-09 Score=111.49 Aligned_cols=107 Identities=9% Similarity=0.063 Sum_probs=69.6
Q ss_pred cceEEEECCCh--hHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccccccc--------------HHHHHHHHH
Q 010217 223 ILHFVIVGGGP--TGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFD--------------KRITAFAEE 286 (515)
Q Consensus 223 ~~~vvVvGgG~--~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~~~--------------~~~~~~~~~ 286 (515)
..++.|+|+|+ ++.+++..+..+ +..++++.+...+++.++ ..+...+.+
T Consensus 157 ~~~~~~~G~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~ 222 (574)
T PRK12842 157 LKTITFIGMMFNSSNADLKHFFNAT--------------RSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAK 222 (574)
T ss_pred cccccccceecccchHHHHHHHhhc--------------cchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHH
Confidence 34889999988 788888887764 355565555554443322 356667778
Q ss_pred HhhcCCeEEEcCcEEEEEe--CCeEEEEec-CCCceEEEecC-eEEEccCCCCccchHHHHHH
Q 010217 287 KFSRDGIDVKLGSMVVKVT--DKEIFTKVR-GNGETSSMPYG-MVVWSTGIAPHAIIKDFMKQ 345 (515)
Q Consensus 287 ~l~~~gV~v~~~~~v~~i~--~~~v~~~~~-~~G~~~~i~~D-~vi~a~G~~~~p~~~~l~~~ 345 (515)
.+++.||++++++.++++. ++.+..+.. ..+....+.++ .||+|+|- .++...++..
T Consensus 223 ~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg--~~~n~~~~~~ 283 (574)
T PRK12842 223 SALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGG--FSHDLARIAR 283 (574)
T ss_pred HHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCC--ccchHHHHHH
Confidence 8889999999999999986 343432222 12333357886 79999993 4333344443
No 101
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.77 E-value=2.7e-08 Score=97.55 Aligned_cols=109 Identities=20% Similarity=0.341 Sum_probs=69.4
Q ss_pred CeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCC----ccchh----------------------ccC-------
Q 010217 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP----LLPSV----------------------TCG------- 105 (515)
Q Consensus 59 ~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~----~~~~~----------------------~~g------- 105 (515)
+||+|||||+||+++|..|++.|.+|+|||+........ +.+.. ..+
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPI 80 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEecc
Confidence 489999999999999999999999999999986543210 00000 000
Q ss_pred ------cccccccccchHHHHhhcCceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCc
Q 010217 106 ------TVEARSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA 175 (515)
Q Consensus 106 ------~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~ 175 (515)
..+...+...+.+.+.+.|+++ +.+++++.+...++.+.+.... + ..++.+|+||+|+|...
T Consensus 81 ~~~~~~~i~r~~l~~~l~~~~~~~gv~~-~~~~~v~~~~~~~~~~~~~~~~-----~--~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 81 ETELAYVIDRDAFDEQLAERAQEAGAEL-RLGTTVLDVEIHDDRVVVIVRG-----G--EGTVTAKIVIGADGSRS 148 (295)
T ss_pred CCCcEEEEEHHHHHHHHHHHHHHcCCEE-EeCcEEeeEEEeCCEEEEEEcC-----c--cEEEEeCEEEECCCcch
Confidence 0011122223445556677776 4577888876655554432111 1 12789999999999864
No 102
>PLN02463 lycopene beta cyclase
Probab=98.76 E-value=5.8e-08 Score=100.11 Aligned_cols=112 Identities=18% Similarity=0.220 Sum_probs=70.8
Q ss_pred CCCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCc-------c-----chhc----c--------------
Q 010217 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPL-------L-----PSVT----C-------------- 104 (515)
Q Consensus 55 ~~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~-------~-----~~~~----~-------------- 104 (515)
....+||+||||||||+++|..|++.|++|+|||+.+...+... + .... .
T Consensus 25 ~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~ 104 (447)
T PLN02463 25 KSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDL 104 (447)
T ss_pred cccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccc
Confidence 34457999999999999999999999999999998764332110 0 0000 0
Q ss_pred ----CcccccccccchHHHHhhcCceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcC
Q 010217 105 ----GTVEARSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARAN 176 (515)
Q Consensus 105 ----g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~ 176 (515)
+.+....+...+.+.+.+.|++ +..++|.+|+..+..+.+.... + .++.+|.||.|+|....
T Consensus 105 ~~~y~~V~R~~L~~~Ll~~~~~~GV~--~~~~~V~~I~~~~~~~~V~~~d-----G---~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 105 DRPYGRVNRKKLKSKMLERCIANGVQ--FHQAKVKKVVHEESKSLVVCDD-----G---VKIQASLVLDATGFSRC 170 (447)
T ss_pred cCcceeEEHHHHHHHHHHHHhhcCCE--EEeeEEEEEEEcCCeEEEEECC-----C---CEEEcCEEEECcCCCcC
Confidence 0001111112233344556766 4577899988766544433211 1 17999999999998764
No 103
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.72 E-value=3.4e-08 Score=105.33 Aligned_cols=107 Identities=12% Similarity=0.077 Sum_probs=70.9
Q ss_pred ceEEEECCChhHHHHHHH-------HHHhhHHHHHhhCcccCCCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEE
Q 010217 224 LHFVIVGGGPTGVEFAAE-------LHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVK 296 (515)
Q Consensus 224 ~~vvVvGgG~~g~E~A~~-------l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~ 296 (515)
+.++++|++.++++.+.. +.++ +.+|++....+..+..+...+...+.+.+++.||+++
T Consensus 161 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~ 226 (557)
T PRK07843 161 LNMVVMQQDYVWLNLLKRHPRGVLRALKV--------------GARTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVL 226 (557)
T ss_pred ccccccHHHHHHHHhhhcCchhHHHHHHH--------------HHHHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEE
Confidence 478999999999998764 3333 2355555444444344566777888888999999999
Q ss_pred cCcEEEEEeC--CeEEEEe-cCCCceEEEecC-eEEEccCCCCccchHHHHHHh
Q 010217 297 LGSMVVKVTD--KEIFTKV-RGNGETSSMPYG-MVVWSTGIAPHAIIKDFMKQV 346 (515)
Q Consensus 297 ~~~~v~~i~~--~~v~~~~-~~~G~~~~i~~D-~vi~a~G~~~~p~~~~l~~~~ 346 (515)
+++.++++.. +.+..+. ..+|+...+.++ .||+|+|- ..+|. ++++..
T Consensus 227 ~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG-~~~n~-~m~~~~ 278 (557)
T PRK07843 227 LNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGG-FEHNE-QMRAKY 278 (557)
T ss_pred eCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCC-cCcCH-HHHHHh
Confidence 9999999863 3343221 235666678885 68887772 33433 554443
No 104
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.71 E-value=7.8e-08 Score=96.86 Aligned_cols=97 Identities=19% Similarity=0.353 Sum_probs=64.1
Q ss_pred hhHHHHHhhCcccCCCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEeC--CeEEEEecCCCceEEE
Q 010217 245 FVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSM 322 (515)
Q Consensus 245 ~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i 322 (515)
+..+.+.+.-|.+.++..=-+......+.. ..++...+.+.+.++|++++++++|+.|+. +++.+..+.+|+++ +
T Consensus 122 ld~~~i~~~eP~l~~~~~aal~~p~~giV~--~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~-~ 198 (429)
T COG0579 122 LDKEEIKELEPLLNEGAVAALLVPSGGIVD--PGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEET-L 198 (429)
T ss_pred cCHHHHHhhCccccccceeeEEcCCCceEc--HHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEE-E
Confidence 344556667777765533333333222221 234566667777788999999999999974 44777777788865 9
Q ss_pred ecCeEEEccCCCCccchHHHHHHhCC
Q 010217 323 PYGMVVWSTGIAPHAIIKDFMKQVGQ 348 (515)
Q Consensus 323 ~~D~vi~a~G~~~~p~~~~l~~~~~~ 348 (515)
+|++||.|.|.... .+++..++
T Consensus 199 ~ak~Vin~AGl~Ad----~la~~~g~ 220 (429)
T COG0579 199 EAKFVINAAGLYAD----PLAQMAGI 220 (429)
T ss_pred EeeEEEECCchhHH----HHHHHhCC
Confidence 99999999995333 45555555
No 105
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.71 E-value=5.7e-08 Score=92.83 Aligned_cols=117 Identities=14% Similarity=0.156 Sum_probs=70.9
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCc-----cchhc--------------------cC--cccc
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPL-----LPSVT--------------------CG--TVEA 109 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~-----~~~~~--------------------~g--~~~~ 109 (515)
...||+||||||||++||++|++.|++|+|+|+.+..++... .+... .+ ..+.
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~ 103 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADS 103 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccH
Confidence 358999999999999999999999999999999877654210 01000 00 0111
Q ss_pred cccccchHHHHhhcCceEEEEEeEEEEEecCCC-EE---EEeeCCccCCC--CCceEEeecCEEEEccCCCc
Q 010217 110 RSIVEPVRNIVRKKNVDICFWEAECFKIDAENK-KV---YCRSSQNTNLN--GKEEFCMDYDYLVIAMGARA 175 (515)
Q Consensus 110 ~~~~~~~~~~~~~~~i~v~~~~~~v~~id~~~~-~v---~~~~~~~~~~~--~~~~~~~~~d~lviAtG~~~ 175 (515)
.++...+.+.+.+.|+++ +...+|.++..++. .+ .+.... .... ..+...+.++.||+|||...
T Consensus 104 ~~l~~~L~~~A~~~Gv~I-~~~t~V~dl~~~~~g~V~Gvv~~~~~-v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 104 VEAAAKLAAAAIDAGAKI-FNGVSVEDVILREDPRVAGVVINWTP-VEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred HHHHHHHHHHHHHcCCEE-EcCceeceeeEeCCCcEEEEEEcccc-ccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 223333455556678877 45667877754332 22 221100 0000 11234799999999999743
No 106
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.67 E-value=8.8e-08 Score=98.09 Aligned_cols=111 Identities=16% Similarity=0.162 Sum_probs=72.7
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCcc-----c----hhccCcc-------c------------
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLL-----P----SVTCGTV-------E------------ 108 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~-----~----~~~~g~~-------~------------ 108 (515)
+++||+||||||||.+||+.|++.|++|+|+|+.+..+..+.- + ....... .
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~ 81 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVA 81 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceE
Confidence 4689999999999999999999999999999998776654321 0 0000000 0
Q ss_pred ------------ccccccchHHHHhhcCceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCc
Q 010217 109 ------------ARSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA 175 (515)
Q Consensus 109 ------------~~~~~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~ 175 (515)
...+...+.....+.|.++ +..+++..+..++..+.+.... ++ .++.++++|.|.|+..
T Consensus 82 ~~~~~~~~y~v~R~~fd~~La~~A~~aGae~-~~~~~~~~~~~~~~~~~~~~~~-----~~--~e~~a~~vI~AdG~~s 152 (396)
T COG0644 82 IEVPVGEGYIVDRAKFDKWLAERAEEAGAEL-YPGTRVTGVIREDDGVVVGVRA-----GD--DEVRAKVVIDADGVNS 152 (396)
T ss_pred EecCCCceEEEEhHHhhHHHHHHHHHcCCEE-EeceEEEEEEEeCCcEEEEEEc-----CC--EEEEcCEEEECCCcch
Confidence 0011112445566678887 4567787777655433322111 11 4899999999999764
No 107
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.66 E-value=2e-06 Score=86.75 Aligned_cols=101 Identities=16% Similarity=0.188 Sum_probs=68.8
Q ss_pred cHHHHHHHHHHhhcCCeEEEcCcEEEEEe--CCeEEEEecCCCceEEEecCeEEEccCCCCccchHHHHHHh--------
Q 010217 277 DKRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQV-------- 346 (515)
Q Consensus 277 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~-------- 346 (515)
...+.+.+.+.+++.|++++.+++|.++. ++.++.+.+.++....+.+|.+|+|+|... ...|..++
T Consensus 262 G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~---S~gL~a~l~~i~Epif 338 (419)
T TIGR03378 262 GIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFF---SNGLVAEFDKIYEPIF 338 (419)
T ss_pred HHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCc---CHHHHhhcCceeeecc
Confidence 46777888999999999999999999975 445655543444223599999999999531 12332222
Q ss_pred CC-----------------C----CCCceeeCCCcccc----CCCCEEEeccccccCcc
Q 010217 347 GQ-----------------T----NRRALATDEWLRVE----GSDSIYALGDCATVNQR 380 (515)
Q Consensus 347 ~~-----------------~----~~g~i~vd~~l~t~----~~~~IyA~GD~~~~~~~ 380 (515)
++ + ..=+|.||+++|.. .++|+||+|-+......
T Consensus 339 ~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~ 397 (419)
T TIGR03378 339 GLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDP 397 (419)
T ss_pred CCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCCh
Confidence 11 0 11247789998841 37899999999886543
No 108
>PRK06847 hypothetical protein; Provisional
Probab=98.61 E-value=2.1e-07 Score=94.79 Aligned_cols=112 Identities=21% Similarity=0.246 Sum_probs=70.4
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccC----Cccc-------------hh--------------ccC
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT----PLLP-------------SV--------------TCG 105 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~----~~~~-------------~~--------------~~g 105 (515)
++++|+|||||+||+++|..|++.|++|+|+|+.+..... .+.+ .+ ..+
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g 82 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDG 82 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCC
Confidence 3679999999999999999999999999999987542110 0000 00 000
Q ss_pred cc--------------------cccccccchHHHHhhcCceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecC
Q 010217 106 TV--------------------EARSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYD 165 (515)
Q Consensus 106 ~~--------------------~~~~~~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d 165 (515)
.. ....+...+.+.+.+.++++. .+.+++.++.....+.+.... + .++.+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~-~~~~v~~i~~~~~~~~v~~~~-----g---~~~~ad 153 (375)
T PRK06847 83 TLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVR-LGTTVTAIEQDDDGVTVTFSD-----G---TTGRYD 153 (375)
T ss_pred CEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEE-eCCEEEEEEEcCCEEEEEEcC-----C---CEEEcC
Confidence 00 000111223344455677774 467888888766655444321 1 178999
Q ss_pred EEEEccCCCcCC
Q 010217 166 YLVIAMGARANT 177 (515)
Q Consensus 166 ~lviAtG~~~~~ 177 (515)
.||.|+|.++..
T Consensus 154 ~vI~AdG~~s~~ 165 (375)
T PRK06847 154 LVVGADGLYSKV 165 (375)
T ss_pred EEEECcCCCcch
Confidence 999999987643
No 109
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.59 E-value=3.7e-06 Score=86.66 Aligned_cols=35 Identities=26% Similarity=0.490 Sum_probs=32.6
Q ss_pred CeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCC
Q 010217 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYF 93 (515)
Q Consensus 59 ~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~ 93 (515)
+||+|||||..|+++|++|++.|++|+|+|+++..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~ 36 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYA 36 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 69999999999999999999999999999998743
No 110
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.59 E-value=6.8e-07 Score=89.54 Aligned_cols=32 Identities=25% Similarity=0.487 Sum_probs=29.6
Q ss_pred eEEEECCcHHHHHHHHhccCCCCeEEEEcCCCC
Q 010217 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (515)
Q Consensus 60 ~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~ 92 (515)
+|+|||+|.|||++|+.|... ++|+|+.|.+.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~ 40 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPL 40 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCC
Confidence 899999999999999999877 99999998754
No 111
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.59 E-value=1.5e-07 Score=72.76 Aligned_cols=76 Identities=20% Similarity=0.366 Sum_probs=59.5
Q ss_pred eEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEEEec
Q 010217 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKIDA 139 (515)
Q Consensus 60 ~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~id~ 139 (515)
+|+|||||+.|+.+|..|+..|.+|+||++++.+. +.+ ..++...+.+.+++.|+++. .+..+..++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~--~~~---------~~~~~~~~~~~l~~~gV~v~-~~~~v~~i~~ 68 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL--PGF---------DPDAAKILEEYLRKRGVEVH-TNTKVKEIEK 68 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS--TTS---------SHHHHHHHHHHHHHTTEEEE-ESEEEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh--hhc---------CHHHHHHHHHHHHHCCCEEE-eCCEEEEEEE
Confidence 68999999999999999999999999999997754 111 12445557788889999984 5788999887
Q ss_pred CCCE--EEEe
Q 010217 140 ENKK--VYCR 147 (515)
Q Consensus 140 ~~~~--v~~~ 147 (515)
++.. |+++
T Consensus 69 ~~~~~~V~~~ 78 (80)
T PF00070_consen 69 DGDGVEVTLE 78 (80)
T ss_dssp ETTSEEEEEE
T ss_pred eCCEEEEEEe
Confidence 7654 4444
No 112
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.58 E-value=2e-07 Score=88.77 Aligned_cols=116 Identities=16% Similarity=0.194 Sum_probs=70.5
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCc-----cchh---------c--cCcc-----------cc
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPL-----LPSV---------T--CGTV-----------EA 109 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~-----~~~~---------~--~g~~-----------~~ 109 (515)
..+||+||||||||++||+.|++.|++|+|+|+++.+++..+ ++.. . .+.. +.
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~ 99 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADS 99 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeH
Confidence 358999999999999999999999999999999987653211 1100 0 0000 01
Q ss_pred cccccchHHHHhhcCceEEEEEeEEEEEecCCC--E---EEEeeCCccCCCC--CceEEeecCEEEEccCCC
Q 010217 110 RSIVEPVRNIVRKKNVDICFWEAECFKIDAENK--K---VYCRSSQNTNLNG--KEEFCMDYDYLVIAMGAR 174 (515)
Q Consensus 110 ~~~~~~~~~~~~~~~i~v~~~~~~v~~id~~~~--~---v~~~~~~~~~~~~--~~~~~~~~d~lviAtG~~ 174 (515)
.++...+...+.+.|+++ +....+.++..++. . |.+.... ....+ .+...+.++.+|.|||..
T Consensus 100 ~el~~~L~~~a~e~GV~I-~~~t~V~dli~~~~~~~V~GVv~~~~~-v~~~g~~~d~~~i~Ak~VVdATG~~ 169 (254)
T TIGR00292 100 AEFISTLASKALQAGAKI-FNGTSVEDLITRDDTVGVAGVVINWSA-IELAGLHVDPLTQRSRVVVDATGHD 169 (254)
T ss_pred HHHHHHHHHHHHHcCCEE-ECCcEEEEEEEeCCCCceEEEEeCCcc-ccccCCCCCCEEEEcCEEEEeecCC
Confidence 122223444455678776 45677888765443 2 2222110 00001 123589999999999964
No 113
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.57 E-value=2.7e-07 Score=95.36 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=34.4
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCc
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFA 94 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~ 94 (515)
..+||+||||||||++||+.|++.|++|+|+|+.+..+
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g 41 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAG 41 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Confidence 35899999999999999999999999999999886543
No 114
>PLN02697 lycopene epsilon cyclase
Probab=98.56 E-value=3.1e-07 Score=96.26 Aligned_cols=108 Identities=17% Similarity=0.221 Sum_probs=67.0
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCC-c----c-----chhc------------cCc-------
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP-L----L-----PSVT------------CGT------- 106 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~-~----~-----~~~~------------~g~------- 106 (515)
...+||+||||||||+++|..|++.|++|+|||+...+.... . + .... .+.
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~ 185 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRA 185 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCc
Confidence 345899999999999999999999999999999753221100 0 0 0000 000
Q ss_pred ---ccccccccchHHHHhhcCceEEEEEeEEEEEecCCCEE---EEeeCCccCCCCCceEEeecCEEEEccCCCc
Q 010217 107 ---VEARSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKV---YCRSSQNTNLNGKEEFCMDYDYLVIAMGARA 175 (515)
Q Consensus 107 ---~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v---~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~ 175 (515)
+....+...+.+.+.+.|++ +..++|+.|..+...+ .+.++ .++.++.||+|+|...
T Consensus 186 Yg~V~R~~L~~~Ll~~a~~~GV~--~~~~~V~~I~~~~~~~~vv~~~dG----------~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 186 YGRVSRTLLHEELLRRCVESGVS--YLSSKVDRITEASDGLRLVACEDG----------RVIPCRLATVASGAAS 248 (529)
T ss_pred ccEEcHHHHHHHHHHHHHhcCCE--EEeeEEEEEEEcCCcEEEEEEcCC----------cEEECCEEEECCCcCh
Confidence 00111112233334556766 5678899987654432 22222 1799999999999876
No 115
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.56 E-value=2.8e-07 Score=94.26 Aligned_cols=106 Identities=18% Similarity=0.214 Sum_probs=66.0
Q ss_pred eEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCC---ccc---------hhc----cC--------c---------
Q 010217 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP---LLP---------SVT----CG--------T--------- 106 (515)
Q Consensus 60 ~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~---~~~---------~~~----~g--------~--------- 106 (515)
||+|||||+||+++|..|++.|++|+|||+.+.+++.. .+. ... .+ .
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 69999999999999999999999999999887654321 000 000 00 0
Q ss_pred -ccccccccchHHHHhhcCceEEEEEeEEEEEecC-CCEEEEeeCCccCCCCCceEEeecCEEEEccCCCc
Q 010217 107 -VEARSIVEPVRNIVRKKNVDICFWEAECFKIDAE-NKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA 175 (515)
Q Consensus 107 -~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~id~~-~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~ 175 (515)
++...+...+.+.+.+.+++ +..++|..+... ...+.+.... + .++.++.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~--~~~~~v~~i~~~~~~~~~v~~~~-----g---~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVL--WLERKAIHAEADGVALSTVYCAG-----G---QRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcE--EEccEEEEEEecCCceeEEEeCC-----C---CEEEeCEEEECCCCch
Confidence 00011112233334555655 457788888765 3333333211 1 2789999999999876
No 116
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.54 E-value=2.2e-06 Score=89.33 Aligned_cols=41 Identities=17% Similarity=0.231 Sum_probs=36.6
Q ss_pred CCCeEEEECCcHHHHHHHHhccC----CCCeEEEEcCCCCCccCC
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNN----PSYDVQVISPRNYFAFTP 97 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~----~g~~V~vie~~~~~~~~~ 97 (515)
..++++|||||+|||+||.+|.+ +|++|+|+|+.+..|+..
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~ 65 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSL 65 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCc
Confidence 35899999999999999999986 478999999999988864
No 117
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.54 E-value=1.4e-07 Score=94.04 Aligned_cols=105 Identities=21% Similarity=0.259 Sum_probs=60.7
Q ss_pred eEEEECCcHHHHHHHHhccCCCCeEEEE-cCCCCCccCCccchh---cc-----------C-------------------
Q 010217 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVI-SPRNYFAFTPLLPSV---TC-----------G------------------- 105 (515)
Q Consensus 60 ~VvIIGgG~AGlsaA~~L~~~g~~V~vi-e~~~~~~~~~~~~~~---~~-----------g------------------- 105 (515)
||+|||||+||..||+.+++.|++|+|+ .+.+.++..+..+.. .. +
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 7999999999999999999999999999 333334333222211 00 0
Q ss_pred -----c-----ccccccccchHHHHhhcCceEEEEEeEEEEEecCCCEEE-EeeCCccCCCCCceEEeecCEEEEccCC
Q 010217 106 -----T-----VEARSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVY-CRSSQNTNLNGKEEFCMDYDYLVIAMGA 173 (515)
Q Consensus 106 -----~-----~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~-~~~~~~~~~~~~~~~~~~~d~lviAtG~ 173 (515)
. .+...+...+++.+.... ++.+++++|++|..+++.|. +... .+ ..+.+|.+|||||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~-nl~i~~~~V~~l~~e~~~v~GV~~~------~g--~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHP-NLTIIQGEVTDLIVENGKVKGVVTK------DG--EEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTST-TEEEEES-EEEEEECTTEEEEEEET------TS--EEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCC-CeEEEEcccceEEecCCeEEEEEeC------CC--CEEecCEEEEeccc
Confidence 0 001111222444454422 34467899999987666543 2221 11 28999999999998
No 118
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.54 E-value=3.6e-07 Score=94.66 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=35.3
Q ss_pred CCCCCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCC
Q 010217 53 EMGIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (515)
Q Consensus 53 ~~~~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~ 91 (515)
.+..+.+||+||||||||++||..|++.|++|+|+|+..
T Consensus 34 ~~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 34 KLSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CcCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 355677999999999999999999999999999999874
No 119
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.54 E-value=3.8e-07 Score=94.22 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=33.7
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCC
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYF 93 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~ 93 (515)
..++|+|||||+||+++|..|++.|++|+|+|+.+..
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 3589999999999999999999999999999987653
No 120
>PRK10015 oxidoreductase; Provisional
Probab=98.53 E-value=3.9e-07 Score=94.15 Aligned_cols=38 Identities=26% Similarity=0.321 Sum_probs=34.4
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCc
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFA 94 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~ 94 (515)
..+||+||||||||++||+.|++.|++|+|||+.+..+
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g 41 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAG 41 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 35899999999999999999999999999999886643
No 121
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.53 E-value=6.8e-07 Score=93.24 Aligned_cols=64 Identities=19% Similarity=0.290 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhc----CC--eEEEcCcEEEEEeC--CeEEEEecCCCceEEEecCeEEEccCCCCccchHHHHHHhCC
Q 010217 278 KRITAFAEEKFSR----DG--IDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ 348 (515)
Q Consensus 278 ~~~~~~~~~~l~~----~g--V~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~~~ 348 (515)
..+...+.+.+++ .| ++++++++|+.|+. ++...+.+.+|+ +.+|.||+|+|. +...+++.+|+
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G~---i~A~~VVvaAG~----~S~~La~~~Gi 282 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRGE---IRARFVVVSACG----YSLLFAQKMGY 282 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCCE---EEeCEEEECcCh----hHHHHHHHhCC
Confidence 3566667777777 67 89999999999974 333333345563 899999999993 33356666664
No 122
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.50 E-value=4e-06 Score=86.62 Aligned_cols=52 Identities=15% Similarity=0.102 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhcCCeEEEcCcEEEEEeC--CeEEEEecCCCceEEEecCeEEEccCC
Q 010217 279 RITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 279 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
.+...+.+.+++.|+++++++.|++++. +.+..+.+.++ ++.+|.||+|+|.
T Consensus 202 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~---~~~a~~VV~a~G~ 255 (416)
T PRK00711 202 LFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG---VITADAYVVALGS 255 (416)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc---EEeCCEEEECCCc
Confidence 5556677778889999999999999863 34443443444 3889999999994
No 123
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.50 E-value=6.6e-07 Score=93.47 Aligned_cols=102 Identities=14% Similarity=0.243 Sum_probs=76.8
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEEE
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~i 137 (515)
+++|+|||||++|+.+|..|.+.|.+|+|+++.+.+. +. ...++...+.+.+++.|+++. .+.++..+
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll-----~~------~d~e~~~~l~~~L~~~GI~i~-~~~~V~~i 237 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL-----PG------EDEDIAHILREKLENDGVKIF-TGAALKGL 237 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-----cc------ccHHHHHHHHHHHHHCCCEEE-ECCEEEEE
Confidence 5799999999999999999999999999999876532 11 012344556677888898874 57789899
Q ss_pred ecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCC
Q 010217 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (515)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~ 178 (515)
+.+++.+.+.. +++..++.+|.||+|+|..|+..
T Consensus 238 ~~~~~~v~~~~-------~g~~~~i~~D~vivA~G~~p~~~ 271 (458)
T PRK06912 238 NSYKKQALFEY-------EGSIQEVNAEFVLVSVGRKPRVQ 271 (458)
T ss_pred EEcCCEEEEEE-------CCceEEEEeCEEEEecCCccCCC
Confidence 87666665543 12234789999999999998764
No 124
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.49 E-value=6.3e-07 Score=91.65 Aligned_cols=32 Identities=19% Similarity=0.328 Sum_probs=30.7
Q ss_pred CeEEEECCcHHHHHHHHhccCCCCeEEEEcCC
Q 010217 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPR 90 (515)
Q Consensus 59 ~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~ 90 (515)
+||+||||||||++||+.|++.|++|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 58999999999999999999999999999987
No 125
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.47 E-value=8.6e-06 Score=83.02 Aligned_cols=80 Identities=20% Similarity=0.338 Sum_probs=50.2
Q ss_pred HHHHhhCcccC-CCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEeC--CeEEEEecCCCceEEEec
Q 010217 248 EDLFKLYPKVK-DSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPY 324 (515)
Q Consensus 248 ~~~~~~~p~~~-~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~ 324 (515)
+++.+.+|.+. +....-++....... .+..+...+.+.+++.|++++.+++|.++.. +.+.+. +.+| ++.+
T Consensus 116 ~e~~~~~P~l~~~~~~~~~~~~~~g~i--~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~-~~~~---~i~a 189 (380)
T TIGR01377 116 KQLKQRFPNIRVPRNEVGLLDPNGGVL--YAEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVK-TTKG---SYQA 189 (380)
T ss_pred HHHHHhCCCCcCCCCceEEEcCCCcEE--cHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEE-eCCC---EEEe
Confidence 34455666653 222223444443322 1335566677778889999999999999974 334433 3444 3899
Q ss_pred CeEEEccCC
Q 010217 325 GMVVWSTGI 333 (515)
Q Consensus 325 D~vi~a~G~ 333 (515)
|.||+|+|.
T Consensus 190 ~~vV~aaG~ 198 (380)
T TIGR01377 190 NKLVVTAGA 198 (380)
T ss_pred CEEEEecCc
Confidence 999999993
No 126
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.47 E-value=8.4e-07 Score=90.89 Aligned_cols=37 Identities=19% Similarity=0.378 Sum_probs=33.5
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCC
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~ 92 (515)
....+|+||||||+|+++|..|++.|++|+|||+.+.
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~ 40 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREP 40 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence 3457999999999999999999999999999998753
No 127
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.47 E-value=6.4e-07 Score=94.18 Aligned_cols=39 Identities=15% Similarity=0.168 Sum_probs=34.2
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCC-CCcc
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN-YFAF 95 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~-~~~~ 95 (515)
..+||+|||||+||+.||..+++.|.+|+|||++. .+|+
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~ 42 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQ 42 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccc
Confidence 35899999999999999999999999999999873 4443
No 128
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.46 E-value=9.2e-07 Score=92.63 Aligned_cols=105 Identities=25% Similarity=0.428 Sum_probs=77.4
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEEE
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~i 137 (515)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+.+. +. ...++...+.+.+++.|+++. .+.++..|
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-----~~------~~~~~~~~l~~~l~~~gV~i~-~~~~V~~i 239 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL-----PG------EDKEISKLAERALKKRGIKIK-TGAKAKKV 239 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC-----Cc------CCHHHHHHHHHHHHHcCCEEE-eCCEEEEE
Confidence 5799999999999999999999999999999886532 11 012344556777888898874 57789999
Q ss_pred ecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCC
Q 010217 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (515)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ 179 (515)
+.+++.+.+.... +++..++.+|.||+|+|.+|+...
T Consensus 240 ~~~~~~v~v~~~~-----gg~~~~i~~D~vi~a~G~~p~~~~ 276 (462)
T PRK06416 240 EQTDDGVTVTLED-----GGKEETLEADYVLVAVGRRPNTEN 276 (462)
T ss_pred EEeCCEEEEEEEe-----CCeeEEEEeCEEEEeeCCccCCCC
Confidence 8765555443211 222347999999999999987653
No 129
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.45 E-value=9.6e-07 Score=91.79 Aligned_cols=101 Identities=16% Similarity=0.245 Sum_probs=75.4
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEE
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~ 136 (515)
.+++|+|||||++|+.+|..|++.|.+|+|+++.+.+.. .. ..++...+.+.+++.|+++ +.+.+++.
T Consensus 156 ~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-----~~------~~~~~~~~~~~l~~~GI~i-~~~~~V~~ 223 (438)
T PRK07251 156 LPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILP-----RE------EPSVAALAKQYMEEDGITF-LLNAHTTE 223 (438)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCC-----CC------CHHHHHHHHHHHHHcCCEE-EcCCEEEE
Confidence 357999999999999999999999999999998865421 10 1123334566778889887 35778999
Q ss_pred EecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCC
Q 010217 137 IDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (515)
Q Consensus 137 id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~ 178 (515)
|+.++..+.+... + .++.+|.||+|+|..|+..
T Consensus 224 i~~~~~~v~v~~~------g---~~i~~D~viva~G~~p~~~ 256 (438)
T PRK07251 224 VKNDGDQVLVVTE------D---ETYRFDALLYATGRKPNTE 256 (438)
T ss_pred EEecCCEEEEEEC------C---eEEEcCEEEEeeCCCCCcc
Confidence 9876655554431 1 1799999999999998754
No 130
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.45 E-value=1.1e-06 Score=92.25 Aligned_cols=104 Identities=19% Similarity=0.332 Sum_probs=74.8
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEEE
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~i 137 (515)
.++|+|||||++|+.+|..|++.|.+|+|+++.+.+. +.. ..++...+.+.+++.|+++ +.+.++..+
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il-----~~~------~~~~~~~l~~~l~~~gI~i-~~~~~v~~i 247 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL-----PTE------DAELSKEVARLLKKLGVRV-VTGAKVLGL 247 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC-----CcC------CHHHHHHHHHHHHhcCCEE-EeCcEEEEE
Confidence 5799999999999999999999999999999886531 110 1234445667788889887 457788888
Q ss_pred ec--CCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCC
Q 010217 138 DA--ENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (515)
Q Consensus 138 d~--~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ 179 (515)
+. .++...+... +++..++.+|.||+|+|..|+...
T Consensus 248 ~~~~~~~~~~~~~~------~g~~~~i~~D~vi~a~G~~p~~~~ 285 (472)
T PRK05976 248 TLKKDGGVLIVAEH------NGEEKTLEADKVLVSVGRRPNTEG 285 (472)
T ss_pred EEecCCCEEEEEEe------CCceEEEEeCEEEEeeCCccCCCC
Confidence 74 3333222211 222347999999999999987643
No 131
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.44 E-value=8.7e-07 Score=89.96 Aligned_cols=105 Identities=18% Similarity=0.211 Sum_probs=66.2
Q ss_pred eEEEECCcHHHHHHHHhc--cCCCCeEEEEcCCCCCccCCccc------------hhccCccc-----------------
Q 010217 60 KVVVLGTGWAGTSFLKNL--NNPSYDVQVISPRNYFAFTPLLP------------SVTCGTVE----------------- 108 (515)
Q Consensus 60 ~VvIIGgG~AGlsaA~~L--~~~g~~V~vie~~~~~~~~~~~~------------~~~~g~~~----------------- 108 (515)
||+|||||+||+++|.+| +..|.+|+|||+.+..++..... .+......
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 799999999999999999 78999999999876653221100 00000000
Q ss_pred -----ccccccchHHHHhhcCceEEEEEeEEEEEecCCC--EEEEeeCCccCCCCCceEEeecCEEEEccCCCcC
Q 010217 109 -----ARSIVEPVRNIVRKKNVDICFWEAECFKIDAENK--KVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARAN 176 (515)
Q Consensus 109 -----~~~~~~~~~~~~~~~~i~v~~~~~~v~~id~~~~--~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~ 176 (515)
...+...+.+.+...+ +.++++.|..|+.... .+.+.++. ++.++.||-|+|..+.
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~--~~~~~~~V~~i~~~~~~~~v~~~~g~----------~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGG--VIRLNARVTSIEETGDGVLVVLADGR----------TIRARVVVDARGPSSP 143 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCC--eEEEccEEEEEEecCceEEEEECCCC----------EEEeeEEEECCCcccc
Confidence 0011111222233234 3367899999988877 34444432 8999999999996543
No 132
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.44 E-value=1e-06 Score=94.51 Aligned_cols=42 Identities=26% Similarity=0.205 Sum_probs=37.4
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCC
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~ 97 (515)
....||||||+|.+|+++|..+++.|++|+|||+.+.+++..
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~ 51 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTT 51 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCccc
Confidence 446899999999999999999999999999999988776653
No 133
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.44 E-value=1.1e-06 Score=92.11 Aligned_cols=104 Identities=21% Similarity=0.344 Sum_probs=76.9
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEE
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~ 136 (515)
..++|+|||||++|+.+|..|++.|.+|+|+++.+.+. +. ...++...+.+.+++.|+++ +.+.++..
T Consensus 169 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-----~~------~~~~~~~~~~~~l~~~gi~i-~~~~~v~~ 236 (461)
T TIGR01350 169 VPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL-----PG------EDAEVSKVVAKALKKKGVKI-LTNTKVTA 236 (461)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC-----CC------CCHHHHHHHHHHHHHcCCEE-EeCCEEEE
Confidence 35799999999999999999999999999999886532 11 01133344566778889887 45778998
Q ss_pred EecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCC
Q 010217 137 IDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (515)
Q Consensus 137 id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~ 178 (515)
|+..++.+.+... +++..++.+|.||+|+|..|+..
T Consensus 237 i~~~~~~v~v~~~------~g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 237 VEKNDDQVVYENK------GGETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred EEEeCCEEEEEEe------CCcEEEEEeCEEEEecCCcccCC
Confidence 8876666655432 12124799999999999998765
No 134
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.44 E-value=6.1e-06 Score=83.68 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=31.5
Q ss_pred CeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCC
Q 010217 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (515)
Q Consensus 59 ~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~ 92 (515)
+||+|||||.+|+++|++|++.|++|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4899999999999999999999999999998754
No 135
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.42 E-value=4.9e-07 Score=90.95 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=30.7
Q ss_pred CeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCC
Q 010217 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYF 93 (515)
Q Consensus 59 ~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~ 93 (515)
++|+||||||||+++|..|++.|++|+|||+.+..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 58999999999999999999999999999988654
No 136
>PRK06184 hypothetical protein; Provisional
Probab=98.42 E-value=1e-06 Score=93.21 Aligned_cols=35 Identities=17% Similarity=0.309 Sum_probs=32.5
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCC
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~ 92 (515)
..+|+||||||+|+++|..|++.|++|+|||+.+.
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~ 37 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPE 37 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 47899999999999999999999999999998754
No 137
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.42 E-value=1.1e-06 Score=91.00 Aligned_cols=100 Identities=18% Similarity=0.291 Sum_probs=74.8
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEEE
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~i 137 (515)
.++|+|||||++|+.+|..|++.|.+|+++++.+.+... . ...++...+.+.+++.|+++ +.+.++..+
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~----~------~~~~~~~~~~~~l~~~gV~v-~~~~~v~~i 205 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNK----L------FDEEMNQIVEEELKKHEINL-RLNEEVDSI 205 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCcc----c------cCHHHHHHHHHHHHHcCCEE-EeCCEEEEE
Confidence 479999999999999999999999999999987654211 0 01233445667788889887 457789999
Q ss_pred ecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCC
Q 010217 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (515)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~ 178 (515)
+.++..+.+.++. .+.+|.||+|+|.+|+..
T Consensus 206 ~~~~~~v~~~~g~----------~i~~D~vi~a~G~~p~~~ 236 (427)
T TIGR03385 206 EGEERVKVFTSGG----------VYQADMVILATGIKPNSE 236 (427)
T ss_pred ecCCCEEEEcCCC----------EEEeCEEEECCCccCCHH
Confidence 8766543443322 799999999999988753
No 138
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.41 E-value=2.9e-07 Score=82.31 Aligned_cols=66 Identities=14% Similarity=0.171 Sum_probs=49.2
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCce
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVD 126 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~ 126 (515)
..||+||||||+||+||++|++.|.+|+|||++..+|+-.+.-+..... --+.++...++++.+|.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~---iVv~~~a~~iL~e~gI~ 95 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNK---IVVREEADEILDEFGIR 95 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccce---eeecchHHHHHHHhCCc
Confidence 5799999999999999999999999999999999888753322221111 12334567778888755
No 139
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.41 E-value=1.2e-06 Score=89.60 Aligned_cols=37 Identities=32% Similarity=0.444 Sum_probs=33.7
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCC
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYF 93 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~ 93 (515)
+..+|+|||||+||+++|..|++.|++|+|+|+.+..
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP 40 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence 4579999999999999999999999999999988653
No 140
>PRK08244 hypothetical protein; Provisional
Probab=98.41 E-value=7.6e-07 Score=94.05 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=32.5
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCC
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~ 92 (515)
.++|+||||||+|+++|..|++.|++|+|||+.+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 47999999999999999999999999999998754
No 141
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.41 E-value=6.1e-07 Score=82.75 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=33.3
Q ss_pred CeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCcc
Q 010217 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAF 95 (515)
Q Consensus 59 ~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~ 95 (515)
.+|+|||+|+||++||..|+..|++|||+||+...++
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGG 38 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGG 38 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCccc
Confidence 4799999999999999999999999999998865544
No 142
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.39 E-value=1.3e-06 Score=76.97 Aligned_cols=104 Identities=19% Similarity=0.321 Sum_probs=62.7
Q ss_pred EEECCcHHHHHHHHhccCC-----CCeEEEEcCCCCCccCCccch--------hccCc-------c--------------
Q 010217 62 VVLGTGWAGTSFLKNLNNP-----SYDVQVISPRNYFAFTPLLPS--------VTCGT-------V-------------- 107 (515)
Q Consensus 62 vIIGgG~AGlsaA~~L~~~-----g~~V~vie~~~~~~~~~~~~~--------~~~g~-------~-------------- 107 (515)
+|||+|++|++++.+|.+. ..+|+|||+.+...+.+..+. ...+. .
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 5999999999999999844 578999999654212111100 00000 0
Q ss_pred -----c-----ccc-cccchH----HHHh--hcCceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEc
Q 010217 108 -----E-----ARS-IVEPVR----NIVR--KKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIA 170 (515)
Q Consensus 108 -----~-----~~~-~~~~~~----~~~~--~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviA 170 (515)
. ++. +-++++ .++. ..+++++++..+|+.|+..+....+.... + ..+.+|+||||
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~-----g---~~~~~d~VvLa 152 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTAD-----G---QSIRADAVVLA 152 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECC-----C---CEEEeCEEEEC
Confidence 0 000 001112 2222 23677888899999999877654443221 1 17899999999
Q ss_pred cCC
Q 010217 171 MGA 173 (515)
Q Consensus 171 tG~ 173 (515)
||.
T Consensus 153 ~Gh 155 (156)
T PF13454_consen 153 TGH 155 (156)
T ss_pred CCC
Confidence 995
No 143
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.39 E-value=1.3e-06 Score=89.90 Aligned_cols=34 Identities=15% Similarity=0.431 Sum_probs=32.0
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCC
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~ 91 (515)
.++|+|||||++|+++|..|++.|++|+|||+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 4689999999999999999999999999999875
No 144
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.39 E-value=1.2e-06 Score=89.99 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=33.7
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCC
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYF 93 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~ 93 (515)
++.+|+|||||+||+++|..|++.|++|+|+|+.+.+
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~ 39 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI 39 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc
Confidence 3579999999999999999999999999999988653
No 145
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.38 E-value=1.9e-05 Score=82.59 Aligned_cols=68 Identities=12% Similarity=0.172 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhcCCeEEEcCcEEEEEeC--C-eEEEE--ecCCCceEEEecCeEEEccCCCCccchHHHHHHhCCC
Q 010217 278 KRITAFAEEKFSRDGIDVKLGSMVVKVTD--K-EIFTK--VRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQT 349 (515)
Q Consensus 278 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~-~v~~~--~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~~~~ 349 (515)
..+...+.+.+++.|++++++++|+.++. + .+.+. ...+|+..++.+|.||+|+|.. ...+.+.+|+.
T Consensus 178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~----s~~La~~~Gi~ 250 (483)
T TIGR01320 178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGG----ALPLLQKSGIP 250 (483)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcc----hHHHHHHcCCC
Confidence 46677777888889999999999999974 2 23332 2234543358999999999942 23566666663
No 146
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.38 E-value=6.7e-06 Score=85.98 Aligned_cols=53 Identities=8% Similarity=0.038 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhcCCeEEEcCcEEEEEeCCeEEEEecCCCceEEEecCeEEEccCC
Q 010217 278 KRITAFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 278 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
..+...+.+.+++.|++|+.++.|++++.++...+.+.+|+ +.+|.||+|+|.
T Consensus 183 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~t~~g~---v~A~~VV~Atga 235 (460)
T TIGR03329 183 GLLVRGLRRVALELGVEIHENTPMTGLEEGQPAVVRTPDGQ---VTADKVVLALNA 235 (460)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEeeCCceEEEeCCcE---EECCEEEEcccc
Confidence 45667777888899999999999999976543333345564 899999999984
No 147
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.37 E-value=2.2e-06 Score=87.89 Aligned_cols=104 Identities=19% Similarity=0.325 Sum_probs=79.1
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEE
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECF 135 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~ 135 (515)
..+++++|||||+-|+..|..+++.|.+|||||+.+.+. +. ..+++...+...+++.++.+ +.+..+.
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL-----p~------~D~ei~~~~~~~l~~~gv~i-~~~~~v~ 238 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL-----PG------EDPEISKELTKQLEKGGVKI-LLNTKVT 238 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-----Cc------CCHHHHHHHHHHHHhCCeEE-EccceEE
Confidence 567899999999999999999999999999999987643 11 12356666778888877766 4577888
Q ss_pred EEecCCCE--EEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCC
Q 010217 136 KIDAENKK--VYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (515)
Q Consensus 136 ~id~~~~~--v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ 179 (515)
.+...++. +.++++. ..++.+|++++|+|-+|+..+
T Consensus 239 ~~~~~~~~v~v~~~~g~--------~~~~~ad~vLvAiGR~Pn~~~ 276 (454)
T COG1249 239 AVEKKDDGVLVTLEDGE--------GGTIEADAVLVAIGRKPNTDG 276 (454)
T ss_pred EEEecCCeEEEEEecCC--------CCEEEeeEEEEccCCccCCCC
Confidence 88766543 4444332 116889999999999988764
No 148
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.36 E-value=6.4e-06 Score=87.77 Aligned_cols=94 Identities=15% Similarity=0.090 Sum_probs=57.7
Q ss_pred HHHHHhhCcccCCCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEeC--CeE---EEEecCCCceEE
Q 010217 247 DEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEI---FTKVRGNGETSS 321 (515)
Q Consensus 247 ~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~v---~~~~~~~G~~~~ 321 (515)
.+++.+.+|.+.++..-.++.....+ -+..+...+...+.+.|++++++++|+.+.. +.+ .+.+..+|+..+
T Consensus 121 ~~e~~~~eP~l~~~~~ga~~~~dg~v---dp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~ 197 (546)
T PRK11101 121 PQQALILEPAVNPALIGAVKVPDGTV---DPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQE 197 (546)
T ss_pred HHHHHHhCCCcCccceEEEEecCcEE---CHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEE
Confidence 34445567776544333344443222 1344555566677889999999999999853 343 333334555456
Q ss_pred EecCeEEEccCCCCccchHHHHHHhC
Q 010217 322 MPYGMVVWSTGIAPHAIIKDFMKQVG 347 (515)
Q Consensus 322 i~~D~vi~a~G~~~~p~~~~l~~~~~ 347 (515)
+.+|.||.|+| ++...+.+..+
T Consensus 198 i~A~~VVnAaG----~wa~~l~~~~g 219 (546)
T PRK11101 198 IHAPVVVNAAG----IWGQHIAEYAD 219 (546)
T ss_pred EECCEEEECCC----hhHHHHHHhcC
Confidence 99999999999 44445554444
No 149
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.36 E-value=1.4e-06 Score=89.52 Aligned_cols=35 Identities=23% Similarity=0.407 Sum_probs=31.5
Q ss_pred CCeEEEECCcHHHHHHHHhccCCC--CeEEEEcCCCC
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPS--YDVQVISPRNY 92 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g--~~V~vie~~~~ 92 (515)
++||+||||||+|+++|..|++.| ++|+|+|+.+.
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 368999999999999999999885 99999998754
No 150
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.35 E-value=2.1e-06 Score=89.89 Aligned_cols=105 Identities=14% Similarity=0.204 Sum_probs=74.9
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEEE
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~i 137 (515)
.++|+|||+|+.|+.+|..|++.|.+|+|+++.+.+.. .. ..++...+.+.+++.|+++ +.++++..+
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-----~~------d~~~~~~l~~~l~~~gV~i-~~~~~V~~i 233 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP-----RE------EPEISAAVEEALAEEGIEV-VTSAQVKAV 233 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC-----cc------CHHHHHHHHHHHHHcCCEE-EcCcEEEEE
Confidence 47999999999999999999999999999998865321 10 1133445667788889887 456778888
Q ss_pred ecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCC
Q 010217 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (515)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ 179 (515)
+.+++.+.+.... .++..++.+|.||+|+|..|+...
T Consensus 234 ~~~~~~~~v~~~~-----~~~~~~i~~D~ViiA~G~~p~~~~ 270 (463)
T TIGR02053 234 SVRGGGKIITVEK-----PGGQGEVEADELLVATGRRPNTDG 270 (463)
T ss_pred EEcCCEEEEEEEe-----CCCceEEEeCEEEEeECCCcCCCC
Confidence 7654433222110 111237999999999999987653
No 151
>PRK06834 hypothetical protein; Provisional
Probab=98.35 E-value=1.5e-06 Score=91.33 Aligned_cols=111 Identities=22% Similarity=0.229 Sum_probs=70.7
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCc--cC---Cccc-------------hhc--------cC----cc
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFA--FT---PLLP-------------SVT--------CG----TV 107 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~--~~---~~~~-------------~~~--------~g----~~ 107 (515)
..+|+||||||+|+++|..|++.|++|+|||+.+... .. .+.+ .+. .+ ..
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRL 82 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEec
Confidence 4799999999999999999999999999999875421 10 0000 000 00 00
Q ss_pred cccc---------------cccchHHHHhhcCceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccC
Q 010217 108 EARS---------------IVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMG 172 (515)
Q Consensus 108 ~~~~---------------~~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG 172 (515)
.... +...+.+.+++.+++++ .+.+++.+..++..+.+.... + .++.+|+||.|.|
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~-~~~~v~~v~~~~~~v~v~~~~-----g---~~i~a~~vVgADG 153 (488)
T PRK06834 83 DISDFPTRHNYGLALWQNHIERILAEWVGELGVPIY-RGREVTGFAQDDTGVDVELSD-----G---RTLRAQYLVGCDG 153 (488)
T ss_pred ccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEE-cCCEEEEEEEcCCeEEEEECC-----C---CEEEeCEEEEecC
Confidence 0000 00112233456677774 477899988776666554321 1 1789999999999
Q ss_pred CCcCC
Q 010217 173 ARANT 177 (515)
Q Consensus 173 ~~~~~ 177 (515)
.+...
T Consensus 154 ~~S~v 158 (488)
T PRK06834 154 GRSLV 158 (488)
T ss_pred CCCCc
Confidence 87644
No 152
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.35 E-value=2.6e-06 Score=89.42 Aligned_cols=105 Identities=19% Similarity=0.253 Sum_probs=76.6
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEE
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~ 136 (515)
.+++|+|||+|+.|+.+|..|++.|.+|+|+++.+.+.. . ...++...+.+.+++.|+++ +.+.++..
T Consensus 182 ~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~--~---------~d~~~~~~~~~~l~~~gi~i-~~~~~v~~ 249 (475)
T PRK06327 182 VPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA--A---------ADEQVAKEAAKAFTKQGLDI-HLGVKIGE 249 (475)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC--c---------CCHHHHHHHHHHHHHcCcEE-EeCcEEEE
Confidence 357999999999999999999999999999998865321 0 01234445566777888887 45778999
Q ss_pred EecCCCEEEE--eeCCccCCCCCceEEeecCEEEEccCCCcCCCC
Q 010217 137 IDAENKKVYC--RSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (515)
Q Consensus 137 id~~~~~v~~--~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ 179 (515)
++..+..+.+ .++ +++...+++|.|++|+|..|+...
T Consensus 250 i~~~~~~v~v~~~~~------~g~~~~i~~D~vl~a~G~~p~~~~ 288 (475)
T PRK06327 250 IKTGGKGVSVAYTDA------DGEAQTLEVDKLIVSIGRVPNTDG 288 (475)
T ss_pred EEEcCCEEEEEEEeC------CCceeEEEcCEEEEccCCccCCCC
Confidence 9876554443 322 122347999999999999988653
No 153
>PRK06370 mercuric reductase; Validated
Probab=98.35 E-value=2.1e-06 Score=89.85 Aligned_cols=103 Identities=21% Similarity=0.375 Sum_probs=75.6
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEE
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~ 136 (515)
.+++|+|||+|+.|+.+|..|++.|.+|+|+++.+.+.. . ...++...+.+.+++.|+++ +.+.++..
T Consensus 170 ~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~-----~------~~~~~~~~l~~~l~~~GV~i-~~~~~V~~ 237 (463)
T PRK06370 170 LPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP-----R------EDEDVAAAVREILEREGIDV-RLNAECIR 237 (463)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc-----c------cCHHHHHHHHHHHHhCCCEE-EeCCEEEE
Confidence 358999999999999999999999999999998865421 1 01233445667788889887 35778999
Q ss_pred EecCCCE--EEEeeCCccCCCCCceEEeecCEEEEccCCCcCCC
Q 010217 137 IDAENKK--VYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (515)
Q Consensus 137 id~~~~~--v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~ 178 (515)
++..++. +.+... + +..++.+|.||+|+|.+|+..
T Consensus 238 i~~~~~~~~v~~~~~------~-~~~~i~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 238 VERDGDGIAVGLDCN------G-GAPEITGSHILVAVGRVPNTD 274 (463)
T ss_pred EEEcCCEEEEEEEeC------C-CceEEEeCEEEECcCCCcCCC
Confidence 9876543 333221 1 123799999999999998764
No 154
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.34 E-value=4.4e-06 Score=82.02 Aligned_cols=92 Identities=22% Similarity=0.365 Sum_probs=70.9
Q ss_pred eEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccc---c--------cccc-----cHHHHHHHHHHh
Q 010217 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADH---I--------LNMF-----DKRITAFAEEKF 288 (515)
Q Consensus 225 ~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~---~--------l~~~-----~~~~~~~~~~~l 288 (515)
+|+|||||+.|+++|..|.+. +.+|+++++.+. + .+.+ +.++.+.+.+.+
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~--------------g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 67 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARA--------------NLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQA 67 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHC--------------CCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHH
Confidence 699999999999999999875 689999997651 1 1222 257778888889
Q ss_pred hcCCeEEEcCcEEEEEeCCe--EEEEecCCCceEEEecCeEEEccCCC
Q 010217 289 SRDGIDVKLGSMVVKVTDKE--IFTKVRGNGETSSMPYGMVVWSTGIA 334 (515)
Q Consensus 289 ~~~gV~v~~~~~v~~i~~~~--v~~~~~~~G~~~~i~~D~vi~a~G~~ 334 (515)
++.|+++++ +.+..++.+. ..+. ..+|+ ++.+|.+|+|+|..
T Consensus 68 ~~~gv~~~~-~~v~~v~~~~~~~~v~-~~~~~--~~~~d~liiAtG~~ 111 (300)
T TIGR01292 68 VKFGAEIIY-EEVIKVDLSDRPFKVK-TGDGK--EYTAKAVIIATGAS 111 (300)
T ss_pred HHcCCeEEE-EEEEEEEecCCeeEEE-eCCCC--EEEeCEEEECCCCC
Confidence 999999999 8898887542 3333 24555 49999999999953
No 155
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.34 E-value=2.9e-07 Score=95.15 Aligned_cols=106 Identities=14% Similarity=0.198 Sum_probs=32.0
Q ss_pred eEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchh------------ccC----------------------
Q 010217 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSV------------TCG---------------------- 105 (515)
Q Consensus 60 ~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~------------~~g---------------------- 105 (515)
||||||||+||++||+.+++.|.+|+|||+.+.+|+....... ..+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 7999999999999999999999999999999988765211000 000
Q ss_pred -----cccccccccchHHHHhhcCceEEEEEeEEEEEecCCCE---EEEeeCCccCCCCCceEEeecCEEEEccCC
Q 010217 106 -----TVEARSIVEPVRNIVRKKNVDICFWEAECFKIDAENKK---VYCRSSQNTNLNGKEEFCMDYDYLVIAMGA 173 (515)
Q Consensus 106 -----~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~---v~~~~~~~~~~~~~~~~~~~~d~lviAtG~ 173 (515)
..++.....-+.+++.+.|+++ +.++.+..+..+++. |.+.+. + +..++.++.+|-|||-
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v-~~~t~v~~v~~~~~~i~~V~~~~~------~-g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEV-LLGTRVVDVIRDGGRITGVIVETK------S-GRKEIRAKVFIDATGD 148 (428)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc-cccccccccccccccccccccccc------c-cccccccccccccccc
Confidence 0111112222455566678887 568888888777643 333321 1 2458999999999994
No 156
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.34 E-value=2.9e-06 Score=86.39 Aligned_cols=102 Identities=15% Similarity=0.279 Sum_probs=73.9
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEE
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~ 136 (515)
..++|+|||||+.|+.+|..|.+.|.+|+++++.+.+... ..+......+.+.+++.|+++ +.+..+..
T Consensus 140 ~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~----------~~~~~~~~~l~~~l~~~gV~i-~~~~~v~~ 208 (377)
T PRK04965 140 DAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS----------LMPPEVSSRLQHRLTEMGVHL-LLKSQLQG 208 (377)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch----------hCCHHHHHHHHHHHHhCCCEE-EECCeEEE
Confidence 3578999999999999999999999999999987653211 001123344567778889887 34678888
Q ss_pred EecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCC
Q 010217 137 IDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANT 177 (515)
Q Consensus 137 id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~ 177 (515)
++.+...+.+... ++ .++.+|.||+|+|..|+.
T Consensus 209 i~~~~~~~~v~~~------~g--~~i~~D~vI~a~G~~p~~ 241 (377)
T PRK04965 209 LEKTDSGIRATLD------SG--RSIEVDAVIAAAGLRPNT 241 (377)
T ss_pred EEccCCEEEEEEc------CC--cEEECCEEEECcCCCcch
Confidence 8876554433321 11 179999999999998864
No 157
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.33 E-value=1.2e-05 Score=90.71 Aligned_cols=36 Identities=22% Similarity=0.236 Sum_probs=32.8
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCC
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~ 92 (515)
...||||||||.||++||..++..|.+|+|+|+...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 457999999999999999999999999999998753
No 158
>PRK11445 putative oxidoreductase; Provisional
Probab=98.32 E-value=3.4e-06 Score=84.93 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=31.3
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCC
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~ 92 (515)
++||+||||||||+++|..|++. ++|+|+|+.+.
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~ 34 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQ 34 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCc
Confidence 37999999999999999999998 99999998764
No 159
>PRK07236 hypothetical protein; Provisional
Probab=98.32 E-value=2.9e-06 Score=86.67 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=32.8
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCC
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~ 92 (515)
.++|+|||||++|+++|..|++.|++|+|+|+.+.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 58999999999999999999999999999998763
No 160
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.31 E-value=2.3e-06 Score=87.75 Aligned_cols=99 Identities=16% Similarity=0.207 Sum_probs=71.5
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEEE
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~i 137 (515)
.++|+|||+|+.|+.+|..|+..|.+|+||++.+.+.... ........+.+.+++.|+++. .+.++..+
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~----------~~~~~~~~l~~~l~~~GV~i~-~~~~V~~i 212 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN----------APPPVQRYLLQRHQQAGVRIL-LNNAIEHV 212 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhh----------cCHHHHHHHHHHHHHCCCEEE-eCCeeEEE
Confidence 5789999999999999999999999999999876542210 011233345666778898874 46788888
Q ss_pred ecCCC-EEEEeeCCccCCCCCceEEeecCEEEEccCCCcCC
Q 010217 138 DAENK-KVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANT 177 (515)
Q Consensus 138 d~~~~-~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~ 177 (515)
+.... .+.+.++. .+.+|.||+|+|..|+.
T Consensus 213 ~~~~~~~v~l~~g~----------~i~aD~Vv~a~G~~pn~ 243 (396)
T PRK09754 213 VDGEKVELTLQSGE----------TLQADVVIYGIGISAND 243 (396)
T ss_pred EcCCEEEEEECCCC----------EEECCEEEECCCCChhh
Confidence 75322 23333322 79999999999998864
No 161
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.30 E-value=4.9e-06 Score=84.67 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=35.3
Q ss_pred CeEEEECCcHHHHHHHHhccCCC--CeEEEEcCCCCCccC
Q 010217 59 KKVVVLGTGWAGTSFLKNLNNPS--YDVQVISPRNYFAFT 96 (515)
Q Consensus 59 ~~VvIIGgG~AGlsaA~~L~~~g--~~V~vie~~~~~~~~ 96 (515)
++|+|||||+|||+||++|++.+ ++|+|+|+.++.|+.
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~ 40 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGL 40 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCce
Confidence 57999999999999999999888 999999999988874
No 162
>PRK06126 hypothetical protein; Provisional
Probab=98.29 E-value=3.6e-06 Score=90.09 Aligned_cols=37 Identities=16% Similarity=0.315 Sum_probs=33.7
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCC
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~ 92 (515)
....+|+||||||+|+++|..|++.|++|+|||+.+.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 4468999999999999999999999999999998754
No 163
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.29 E-value=3.9e-05 Score=82.94 Aligned_cols=93 Identities=18% Similarity=0.184 Sum_probs=59.9
Q ss_pred HHHHHhhCcccCCC-----cEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEeC----CeE---EEEec
Q 010217 247 DEDLFKLYPKVKDS-----VKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD----KEI---FTKVR 314 (515)
Q Consensus 247 ~~~~~~~~p~~~~~-----~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~----~~v---~~~~~ 314 (515)
.+++.+.+|.+.+. ..-.++.. +... -+..+...+.+.+++.|++++.+++|.++.. +.+ .+.+.
T Consensus 199 ~~e~~~~~P~L~~~~~~~~l~ga~~~~-Dg~v--dp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~ 275 (627)
T PLN02464 199 AKESLELFPTLAKKGKDGSLKGTVVYY-DGQM--NDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDN 275 (627)
T ss_pred HHHHHHhCCCCCccccccceeEEEEec-CcEE--cHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEEC
Confidence 45556678887644 22233332 2222 2456777788888999999999999999852 333 33333
Q ss_pred CCCceEEEecCeEEEccCCCCccchHHHHHHh
Q 010217 315 GNGETSSMPYGMVVWSTGIAPHAIIKDFMKQV 346 (515)
Q Consensus 315 ~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~ 346 (515)
.+|+..++.+|.||.|+| ++...+...+
T Consensus 276 ~tg~~~~i~a~~VVnAaG----aws~~l~~~~ 303 (627)
T PLN02464 276 LTGKEFDVYAKVVVNAAG----PFCDEVRKMA 303 (627)
T ss_pred CCCcEEEEEeCEEEECCC----HhHHHHHHhc
Confidence 456655689999999999 4454555544
No 164
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.29 E-value=3.7e-06 Score=85.85 Aligned_cols=33 Identities=18% Similarity=0.396 Sum_probs=31.3
Q ss_pred eEEEECCcHHHHHHHHhccCCCCeEEEEcCCCC
Q 010217 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (515)
Q Consensus 60 ~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~ 92 (515)
||+|||||+||+++|..|++.|++|+|+|+.+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence 699999999999999999999999999999864
No 165
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.28 E-value=3.1e-06 Score=86.66 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=31.7
Q ss_pred CCeEEEECCcHHHHHHHHhccCC--CCeEEEEcCCC
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNP--SYDVQVISPRN 91 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~--g~~V~vie~~~ 91 (515)
..||+|||||.+|+++|++|++. |++|+|+|+.+
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 47999999999999999999987 99999999875
No 166
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.28 E-value=3.8e-06 Score=85.98 Aligned_cols=35 Identities=17% Similarity=0.431 Sum_probs=32.6
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCC
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~ 91 (515)
..+||+|||||++|+++|..|++.|++|+|||+.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 45899999999999999999999999999999875
No 167
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.28 E-value=2.5e-06 Score=87.36 Aligned_cols=33 Identities=15% Similarity=0.248 Sum_probs=30.5
Q ss_pred EEECCcHHHHHHHHhccCCCCeEEEEcCCCCCc
Q 010217 62 VVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFA 94 (515)
Q Consensus 62 vIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~ 94 (515)
+|||||+||++||..|++.|++|+|+|+++..+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G 33 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIG 33 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCcccc
Confidence 699999999999999999999999999987654
No 168
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.28 E-value=5.7e-05 Score=77.76 Aligned_cols=52 Identities=12% Similarity=-0.004 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhcCCeEEEcCcEEEEEe-C--CeEEEEecCCCceEEEecCeEEEccCC
Q 010217 279 RITAFAEEKFSRDGIDVKLGSMVVKVT-D--KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 279 ~~~~~~~~~l~~~gV~v~~~~~v~~i~-~--~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
.+...+.+.+++.|++++.++.|++++ . +.+..+.+.+|+ +.++.||+|+|.
T Consensus 184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g~---i~a~~vVvaagg 238 (407)
T TIGR01373 184 AVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRGF---IGAKKVGVAVAG 238 (407)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCce---EECCEEEECCCh
Confidence 455556678888999999999999995 2 334444445563 899999888883
No 169
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.28 E-value=3.7e-06 Score=86.09 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=32.8
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCC
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~ 92 (515)
..+|+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 57899999999999999999999999999998864
No 170
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.27 E-value=1.3e-05 Score=78.64 Aligned_cols=107 Identities=19% Similarity=0.284 Sum_probs=80.1
Q ss_pred eEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccc-------------------------------
Q 010217 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL------------------------------- 273 (515)
Q Consensus 225 ~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l------------------------------- 273 (515)
.|+|||||+.|+-+|..+.+. |.+|+|++..+.+.
T Consensus 5 dviIIGgGpAGlMaA~~aa~~--------------G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~ 70 (408)
T COG2081 5 DVIIIGGGPAGLMAAISAAKA--------------GRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGH 70 (408)
T ss_pred eEEEECCCHHHHHHHHHHhhc--------------CCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcch
Confidence 899999999999999999985 67888886665432
Q ss_pred ----------------------------------cc--ccHHHHHHHHHHhhcCCeEEEcCcEEEEEeCCe--EEEEecC
Q 010217 274 ----------------------------------NM--FDKRITAFAEEKFSRDGIDVKLGSMVVKVTDKE--IFTKVRG 315 (515)
Q Consensus 274 ----------------------------------~~--~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~--v~~~~~~ 315 (515)
|. -...+.+.+...+++.||+++++++|.+++.+. ..+. +.
T Consensus 71 fl~sal~~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~-t~ 149 (408)
T COG2081 71 FLKSALARFTPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLD-TS 149 (408)
T ss_pred HHHHHHHhCCHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEE-cC
Confidence 00 012355667778899999999999999998653 4443 46
Q ss_pred CCceEEEecCeEEEccCCCCcc------chHHHHHHhCC
Q 010217 316 NGETSSMPYGMVVWSTGIAPHA------IIKDFMKQVGQ 348 (515)
Q Consensus 316 ~G~~~~i~~D~vi~a~G~~~~p------~~~~l~~~~~~ 348 (515)
+|++ +.||.+|+|+|-...| .-..+++++|+
T Consensus 150 ~g~~--i~~d~lilAtGG~S~P~lGstg~gy~iA~~~G~ 186 (408)
T COG2081 150 SGET--VKCDSLILATGGKSWPKLGSTGFGYPIARQFGH 186 (408)
T ss_pred CCCE--EEccEEEEecCCcCCCCCCCCchhhHHHHHcCC
Confidence 7763 9999999999965556 32356777776
No 171
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.27 E-value=3.7e-06 Score=90.00 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=34.5
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCC
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYF 93 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~ 93 (515)
....+|+||||||+|+++|..|++.|++|+|||+.+..
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~ 58 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL 58 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 45689999999999999999999999999999988643
No 172
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.27 E-value=4.5e-06 Score=84.50 Aligned_cols=35 Identities=20% Similarity=0.436 Sum_probs=31.3
Q ss_pred eEEEECCcHHHHHHHHhccCC--CCeEEEEcCCCCCc
Q 010217 60 KVVVLGTGWAGTSFLKNLNNP--SYDVQVISPRNYFA 94 (515)
Q Consensus 60 ~VvIIGgG~AGlsaA~~L~~~--g~~V~vie~~~~~~ 94 (515)
||+|||||+||+++|..|++. |++|+|+|+.+..+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~ 37 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIG 37 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence 699999999999999999965 99999999987444
No 173
>PRK07190 hypothetical protein; Provisional
Probab=98.27 E-value=4.5e-06 Score=87.61 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=33.0
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCC
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~ 92 (515)
...+|+||||||+|+++|..|++.|.+|+|||+.+.
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~ 39 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDG 39 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 357999999999999999999999999999998764
No 174
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.27 E-value=7.6e-05 Score=78.25 Aligned_cols=67 Identities=15% Similarity=0.205 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhcCC-eEEEcCcEEEEEeC--Ce-EEEE--ecCCCceEEEecCeEEEccCCCCccchHHHHHHhCC
Q 010217 278 KRITAFAEEKFSRDG-IDVKLGSMVVKVTD--KE-IFTK--VRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ 348 (515)
Q Consensus 278 ~~~~~~~~~~l~~~g-V~v~~~~~v~~i~~--~~-v~~~--~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~~~ 348 (515)
..+.+.+.+.+++.| |+++++++|+.++. ++ +.+. .+.+|+..++.++.||+|+|.. ...+++.+|+
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~----s~~L~~~~Gi 255 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGG----ALPLLQKSGI 255 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcc----hHHHHHHcCC
Confidence 456677777788776 99999999999863 33 3332 2234543348999999999942 2355666655
No 175
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.27 E-value=6.4e-07 Score=66.60 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=31.7
Q ss_pred EECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCC
Q 010217 63 VLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (515)
Q Consensus 63 IIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~ 97 (515)
|||||++||++|..|++.|++|+|+|+++..++..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~ 35 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRA 35 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGG
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcce
Confidence 89999999999999999999999999999988753
No 176
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.26 E-value=6.5e-06 Score=86.97 Aligned_cols=39 Identities=18% Similarity=0.217 Sum_probs=35.2
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCcc
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAF 95 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~ 95 (515)
...||||||+|.||++||+.+++.|.+|+|||+.+..++
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG 98 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGG 98 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Confidence 467999999999999999999999999999999876554
No 177
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.26 E-value=5.9e-07 Score=80.91 Aligned_cols=67 Identities=16% Similarity=0.109 Sum_probs=42.3
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCce
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVD 126 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~ 126 (515)
...||+|||||||||+||++|++.|++|.|||++..+++..+.-...... --+..+...++.+.++.
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~---iVVq~~a~~iL~elgi~ 82 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNK---IVVQEEADEILDELGIP 82 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT------EEEETTTHHHHHHHT--
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccch---hhhhhhHHHHHHhCCce
Confidence 35799999999999999999999999999999998777643222111111 11233456777777754
No 178
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.26 E-value=5.1e-06 Score=87.04 Aligned_cols=106 Identities=21% Similarity=0.248 Sum_probs=75.5
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEE
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~ 136 (515)
.+++|+|||||+.|+.+|..|++.|.+|+|+++.+.+. +.. ..++...+.+.+++.|+++ +.++++..
T Consensus 171 ~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l-----~~~------d~~~~~~l~~~l~~~gV~i-~~~~~v~~ 238 (466)
T PRK07818 171 LPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL-----PNE------DAEVSKEIAKQYKKLGVKI-LTGTKVES 238 (466)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC-----Ccc------CHHHHHHHHHHHHHCCCEE-EECCEEEE
Confidence 35799999999999999999999999999999775432 111 1234445677788889987 45778989
Q ss_pred EecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCC
Q 010217 137 IDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (515)
Q Consensus 137 id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~ 178 (515)
++..++.+.+.... .+++..++++|.||+|+|.+|+..
T Consensus 239 i~~~~~~~~v~~~~----~~g~~~~i~~D~vi~a~G~~pn~~ 276 (466)
T PRK07818 239 IDDNGSKVTVTVSK----KDGKAQELEADKVLQAIGFAPRVE 276 (466)
T ss_pred EEEeCCeEEEEEEe----cCCCeEEEEeCEEEECcCcccCCC
Confidence 87665544322100 012224799999999999998764
No 179
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.26 E-value=3.8e-06 Score=87.20 Aligned_cols=97 Identities=20% Similarity=0.337 Sum_probs=74.0
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEEE
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~i 137 (515)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+.+.. . ...++...+.+.+++.|++++ .+.++..+
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~--~---------~d~~~~~~l~~~l~~~gI~i~-~~~~v~~i 215 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK--L---------MDADMNQPILDELDKREIPYR-LNEEIDAI 215 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch--h---------cCHHHHHHHHHHHHhcCCEEE-ECCeEEEE
Confidence 47999999999999999999999999999998765321 1 012344556777888898874 57788888
Q ss_pred ecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCC
Q 010217 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (515)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~ 178 (515)
+. ..+.+.++. .+.+|.|++|+|.+|+..
T Consensus 216 ~~--~~v~~~~g~----------~~~~D~vl~a~G~~pn~~ 244 (438)
T PRK13512 216 NG--NEVTFKSGK----------VEHYDMIIEGVGTHPNSK 244 (438)
T ss_pred eC--CEEEECCCC----------EEEeCEEEECcCCCcChH
Confidence 74 356654432 689999999999998754
No 180
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.25 E-value=4.4e-06 Score=85.23 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=30.9
Q ss_pred eEEEECCcHHHHHHHHhccCCC-CeEEEEcCCCC
Q 010217 60 KVVVLGTGWAGTSFLKNLNNPS-YDVQVISPRNY 92 (515)
Q Consensus 60 ~VvIIGgG~AGlsaA~~L~~~g-~~V~vie~~~~ 92 (515)
||+||||||||+++|..|++.| ++|+|+|+.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 6999999999999999999999 99999998754
No 181
>PRK06185 hypothetical protein; Provisional
Probab=98.24 E-value=4.4e-06 Score=86.07 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=33.5
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCC
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~ 92 (515)
.+.+||+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 3468999999999999999999999999999998753
No 182
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.23 E-value=5.4e-06 Score=84.94 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=31.7
Q ss_pred CeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCC
Q 010217 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (515)
Q Consensus 59 ~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~ 92 (515)
+||+||||||||++||..|++.|++|+|+|+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 4899999999999999999999999999998754
No 183
>PRK07045 putative monooxygenase; Reviewed
Probab=98.23 E-value=4.8e-06 Score=85.17 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=33.8
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCC
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYF 93 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~ 93 (515)
..++|+||||||||+++|..|++.|++|+|+|+.+..
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 4579999999999999999999999999999987654
No 184
>PRK14694 putative mercuric reductase; Provisional
Probab=98.22 E-value=6.9e-06 Score=86.08 Aligned_cols=100 Identities=14% Similarity=0.299 Sum_probs=74.6
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEEE
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~i 137 (515)
+++|+|||+|+.|+.+|..|++.|.+|+|+++...+ +. ...++...+.+.+++.|+++. .+.++..+
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l------~~------~~~~~~~~l~~~l~~~GI~v~-~~~~v~~i 244 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVL------SQ------EDPAVGEAIEAAFRREGIEVL-KQTQASEV 244 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCC------CC------CCHHHHHHHHHHHHhCCCEEE-eCCEEEEE
Confidence 579999999999999999999999999999864221 11 112344556778888898873 46788888
Q ss_pred ecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCC
Q 010217 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (515)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ 179 (515)
+.++..+.+... ++ ++.+|.||+|+|.+|+...
T Consensus 245 ~~~~~~~~v~~~------~~---~i~~D~vi~a~G~~pn~~~ 277 (468)
T PRK14694 245 DYNGREFILETN------AG---TLRAEQLLVATGRTPNTEN 277 (468)
T ss_pred EEcCCEEEEEEC------CC---EEEeCEEEEccCCCCCcCC
Confidence 876665554431 11 6999999999999987653
No 185
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.22 E-value=3.5e-05 Score=73.67 Aligned_cols=135 Identities=20% Similarity=0.200 Sum_probs=85.2
Q ss_pred eEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccccc-----------------------------
Q 010217 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM----------------------------- 275 (515)
Q Consensus 225 ~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~----------------------------- 275 (515)
.|+|||+|+.|+-+|..+++. +.+|.++++...+...
T Consensus 27 DVvIVGgGpAGl~AA~~la~~--------------G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~ 92 (257)
T PRK04176 27 DVAIVGAGPSGLTAAYYLAKA--------------GLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYK 92 (257)
T ss_pred CEEEECccHHHHHHHHHHHhC--------------CCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCce
Confidence 899999999999999999874 6889999876543110
Q ss_pred --------c-cHHHHHHHHHHhhcCCeEEEcCcEEEEEe--CC-eEEEEec------CCC---ceEEEecCeEEEccCCC
Q 010217 276 --------F-DKRITAFAEEKFSRDGIDVKLGSMVVKVT--DK-EIFTKVR------GNG---ETSSMPYGMVVWSTGIA 334 (515)
Q Consensus 276 --------~-~~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~~-~v~~~~~------~~G---~~~~i~~D~vi~a~G~~ 334 (515)
. ...+...+.+...+.|++++.++.+.++. ++ .+..+.. .+| +...+.++.||.|+|.
T Consensus 93 ~~~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~- 171 (257)
T PRK04176 93 EVEDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGH- 171 (257)
T ss_pred eecCcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCC-
Confidence 0 12344555666678899999999998875 33 3322111 111 2346999999999994
Q ss_pred CccchHHHHHHhC---C--C-------CCC-ceeeCCCccccCCCCEEEeccccc
Q 010217 335 PHAIIKDFMKQVG---Q--T-------NRR-ALATDEWLRVEGSDSIYALGDCAT 376 (515)
Q Consensus 335 ~~p~~~~l~~~~~---~--~-------~~g-~i~vd~~l~t~~~~~IyA~GD~~~ 376 (515)
..+..+.+.+... . . ..+ ..+|+..-++ +|++|++|=++.
T Consensus 172 ~a~v~~~l~~~~~~~~~~~~g~~~~~~~~~e~~v~~~t~~~--~~g~~~~gm~~~ 224 (257)
T PRK04176 172 DAEVVSVLARKGPELGIEVPGEKSMWAERGEKLVVENTGEV--YPGLYVAGMAAN 224 (257)
T ss_pred CcHHHHHHHHHcCCcccccCCccccccCchHHHHHhcCCeE--cCCEEEeehhhh
Confidence 2233333333322 1 0 111 2333444443 899999996654
No 186
>PRK09126 hypothetical protein; Provisional
Probab=98.22 E-value=7.8e-06 Score=83.72 Aligned_cols=35 Identities=31% Similarity=0.529 Sum_probs=32.8
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCC
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~ 92 (515)
..+|+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 57999999999999999999999999999998764
No 187
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.22 E-value=4.6e-06 Score=85.31 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=32.9
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCC
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~ 92 (515)
..+||+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 357999999999999999999999999999998754
No 188
>PRK07588 hypothetical protein; Provisional
Probab=98.22 E-value=4.8e-06 Score=85.27 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=32.1
Q ss_pred CeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCC
Q 010217 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYF 93 (515)
Q Consensus 59 ~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~ 93 (515)
++|+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPEL 35 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCc
Confidence 48999999999999999999999999999987643
No 189
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.22 E-value=7.8e-06 Score=85.22 Aligned_cols=97 Identities=33% Similarity=0.480 Sum_probs=69.3
Q ss_pred eEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccc------cccc-----c--HHHHHHHHHHhhcC
Q 010217 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHI------LNMF-----D--KRITAFAEEKFSRD 291 (515)
Q Consensus 225 ~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~------l~~~-----~--~~~~~~~~~~l~~~ 291 (515)
+|+|||||+.|+.+|..|+++. ++.+|+|+++.+.+ ++.+ + .++.....+.+++.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~------------~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLN------------KELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKS 69 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHC------------CCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHC
Confidence 7999999999999999998763 24699999998753 1111 1 12222334567788
Q ss_pred CeEEEcCcEEEEEeCC--eEEEEecCCCceEEEecCeEEEccCC
Q 010217 292 GIDVKLGSMVVKVTDK--EIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 292 gV~v~~~~~v~~i~~~--~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
||+++.++.|.+|+.+ .+.+....+|+..++++|.+|+|||.
T Consensus 70 gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~ 113 (444)
T PRK09564 70 GIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGA 113 (444)
T ss_pred CCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCC
Confidence 9999999999999753 45554333455434559999999994
No 190
>PRK06116 glutathione reductase; Validated
Probab=98.21 E-value=5.7e-06 Score=86.35 Aligned_cols=103 Identities=19% Similarity=0.239 Sum_probs=74.7
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEE
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~ 136 (515)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +.. ..++...+.+.+++.|+++ +.+.++..
T Consensus 166 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-----~~~------~~~~~~~l~~~L~~~GV~i-~~~~~V~~ 233 (450)
T PRK06116 166 LPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL-----RGF------DPDIRETLVEEMEKKGIRL-HTNAVPKA 233 (450)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc-----ccc------CHHHHHHHHHHHHHCCcEE-ECCCEEEE
Confidence 35799999999999999999999999999999876431 110 1234455667788889887 35778989
Q ss_pred EecCCCE-EEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCC
Q 010217 137 IDAENKK-VYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (515)
Q Consensus 137 id~~~~~-v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ 179 (515)
++.+++. +.+.... + .++.+|.||+|+|.+|+...
T Consensus 234 i~~~~~g~~~v~~~~-----g---~~i~~D~Vv~a~G~~p~~~~ 269 (450)
T PRK06116 234 VEKNADGSLTLTLED-----G---ETLTVDCLIWAIGREPNTDG 269 (450)
T ss_pred EEEcCCceEEEEEcC-----C---cEEEeCEEEEeeCCCcCCCC
Confidence 8764332 3333211 1 17899999999999987653
No 191
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.21 E-value=2.4e-05 Score=81.55 Aligned_cols=41 Identities=24% Similarity=0.368 Sum_probs=34.3
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCC--CCeEEEEcCCCCCccC
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNP--SYDVQVISPRNYFAFT 96 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~--g~~V~vie~~~~~~~~ 96 (515)
....||||||||.+|.++|+.|++. +.+|+|+|+.+..++.
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~ 46 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIE 46 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchh
Confidence 3457999999999999999999965 8999999995555543
No 192
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.20 E-value=7.3e-06 Score=85.83 Aligned_cols=102 Identities=19% Similarity=0.259 Sum_probs=75.3
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEE
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~ 136 (515)
.+++|+|||||+.|+.+|..|+..|.+|+|+++.+.+. +. ...++...+.+.+++.|+++ +.++.+..
T Consensus 174 ~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-----~~------~d~~~~~~l~~~l~~~gI~v-~~~~~v~~ 241 (461)
T PRK05249 174 LPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL-----SF------LDDEISDALSYHLRDSGVTI-RHNEEVEK 241 (461)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-----Cc------CCHHHHHHHHHHHHHcCCEE-EECCEEEE
Confidence 35899999999999999999999999999999886532 11 11234455667778889887 45778888
Q ss_pred EecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCC
Q 010217 137 IDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (515)
Q Consensus 137 id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~ 178 (515)
++..+..+.+... ++. ++.+|.|++|+|.+|+..
T Consensus 242 i~~~~~~~~v~~~------~g~--~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 242 VEGGDDGVIVHLK------SGK--KIKADCLLYANGRTGNTD 275 (461)
T ss_pred EEEeCCeEEEEEC------CCC--EEEeCEEEEeecCCcccc
Confidence 8765544444321 111 789999999999998764
No 193
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.20 E-value=7.3e-06 Score=85.33 Aligned_cols=102 Identities=16% Similarity=0.190 Sum_probs=73.7
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEE
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~ 136 (515)
..++|+|||+|+.|+.+|..+++.|.+|+|+++.+.+. +.. ..++...+.+.+++.|+++ +.+.++..
T Consensus 165 ~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-----~~~------d~~~~~~l~~~l~~~gV~i-~~~~~v~~ 232 (446)
T TIGR01424 165 LPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL-----RGF------DDDMRALLARNMEGRGIRI-HPQTSLTS 232 (446)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC-----ccc------CHHHHHHHHHHHHHCCCEE-EeCCEEEE
Confidence 35789999999999999999999999999999876531 110 1234444667788889887 45778888
Q ss_pred EecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCC
Q 010217 137 IDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (515)
Q Consensus 137 id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~ 178 (515)
++..+..+.+.... + .++.+|.||+|+|..|+..
T Consensus 233 i~~~~~~~~v~~~~-----g---~~i~~D~viva~G~~pn~~ 266 (446)
T TIGR01424 233 ITKTDDGLKVTLSH-----G---EEIVADVVLFATGRSPNTK 266 (446)
T ss_pred EEEcCCeEEEEEcC-----C---cEeecCEEEEeeCCCcCCC
Confidence 87544433333211 1 1799999999999998754
No 194
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.20 E-value=6.2e-06 Score=88.04 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=33.9
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCC
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~ 92 (515)
...++|+||||||+|+++|..|++.|++|+|||+.+.
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~ 44 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPT 44 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 4568999999999999999999999999999998864
No 195
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.19 E-value=6.3e-06 Score=83.88 Aligned_cols=34 Identities=21% Similarity=0.192 Sum_probs=31.9
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCC
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~ 91 (515)
.+||+|||||++|+++|++|++.|++|+|||++.
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~ 36 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM 36 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 5799999999999999999999999999999864
No 196
>PRK07846 mycothione reductase; Reviewed
Probab=98.19 E-value=8.2e-06 Score=84.95 Aligned_cols=101 Identities=18% Similarity=0.271 Sum_probs=71.1
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEEE
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~i 137 (515)
+++|+|||||+.|+.+|..|++.|.+|+|+++.+.+. +. . ..++...+..++ +.++++ +.+.++..+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll-----~~-----~-d~~~~~~l~~l~-~~~v~i-~~~~~v~~i 232 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL-----RH-----L-DDDISERFTELA-SKRWDV-RLGRNVVGV 232 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-----cc-----c-CHHHHHHHHHHH-hcCeEE-EeCCEEEEE
Confidence 5799999999999999999999999999999886532 11 0 112223333333 456776 357788888
Q ss_pred ecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCC
Q 010217 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (515)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ 179 (515)
+..++.+.+.... + .++++|.|++|+|.+|+...
T Consensus 233 ~~~~~~v~v~~~~-----g---~~i~~D~vl~a~G~~pn~~~ 266 (451)
T PRK07846 233 SQDGSGVTLRLDD-----G---STVEADVLLVATGRVPNGDL 266 (451)
T ss_pred EEcCCEEEEEECC-----C---cEeecCEEEEEECCccCccc
Confidence 8665544443211 1 17999999999999987654
No 197
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.19 E-value=4.8e-06 Score=85.73 Aligned_cols=98 Identities=18% Similarity=0.259 Sum_probs=77.6
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEEE
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~i 137 (515)
.++++|||+|++|+.+|..|++.|++|+++|..+..+..... ..+...+.+.++.+|++++ .+..+..|
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~----------~~~~~~~~~~l~~~gi~~~-~~~~~~~i 204 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD----------PEVAEELAELLEKYGVELL-LGTKVVGV 204 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh----------HHHHHHHHHHHHHCCcEEE-eCCceEEE
Confidence 489999999999999999999999999999999887654322 2445567888889997763 57788899
Q ss_pred ecCCCEE-----EEeeCCccCCCCCceEEeecCEEEEccCCCcC
Q 010217 138 DAENKKV-----YCRSSQNTNLNGKEEFCMDYDYLVIAMGARAN 176 (515)
Q Consensus 138 d~~~~~v-----~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~ 176 (515)
+...+.. ....+ ..+++|.+++++|.+|+
T Consensus 205 ~~~~~~~~~~~~~~~~~----------~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 205 EGKGNTLVVERVVGIDG----------EEIKADLVIIGPGERPN 238 (415)
T ss_pred EcccCcceeeEEEEeCC----------cEEEeeEEEEeeccccc
Confidence 8776543 22222 27999999999999985
No 198
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.18 E-value=9.2e-06 Score=85.06 Aligned_cols=105 Identities=18% Similarity=0.260 Sum_probs=75.1
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEE
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~ 136 (515)
.+++|+|||||+.|+.+|..+++.|.+|+||++.+.+. +.. ..++...+.+.+++.|+++ +.+.++..
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il-----~~~------d~~~~~~l~~~l~~~gV~i-~~~~~V~~ 240 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC-----PGT------DTETAKTLQKALTKQGMKF-KLGSKVTG 240 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC-----CCC------CHHHHHHHHHHHHhcCCEE-EECcEEEE
Confidence 46899999999999999999999999999999876532 110 1133445667788889887 45778888
Q ss_pred EecCCCEEE--EeeCCccCCCCCceEEeecCEEEEccCCCcCCC
Q 010217 137 IDAENKKVY--CRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (515)
Q Consensus 137 id~~~~~v~--~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~ 178 (515)
+...++.+. +.... +++...+.+|.|++|+|..|+..
T Consensus 241 i~~~~~~v~v~~~~~~-----~g~~~~i~~D~vi~a~G~~pn~~ 279 (466)
T PRK06115 241 ATAGADGVSLTLEPAA-----GGAAETLQADYVLVAIGRRPYTQ 279 (466)
T ss_pred EEEcCCeEEEEEEEcC-----CCceeEEEeCEEEEccCCccccc
Confidence 876544333 33211 12234799999999999998754
No 199
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.18 E-value=5.6e-06 Score=85.00 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=32.5
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCC
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~ 92 (515)
..+|+|||||+||+++|..|++.|++|+|+|+.+.
T Consensus 2 ~~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 2 RGSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 37899999999999999999999999999998764
No 200
>PLN02661 Putative thiazole synthesis
Probab=98.18 E-value=1e-05 Score=79.55 Aligned_cols=39 Identities=28% Similarity=0.349 Sum_probs=34.3
Q ss_pred CCCeEEEECCcHHHHHHHHhccC-CCCeEEEEcCCCCCcc
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNN-PSYDVQVISPRNYFAF 95 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~-~g~~V~vie~~~~~~~ 95 (515)
...||+|||||+||++||++|++ .|++|+|||+....++
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GG 130 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGG 130 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccc
Confidence 35799999999999999999985 4899999999877654
No 201
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.17 E-value=9.6e-06 Score=83.13 Aligned_cols=33 Identities=24% Similarity=0.432 Sum_probs=31.0
Q ss_pred CCeEEEECCcHHHHHHHHhccCC---CCeEEEEcCC
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNP---SYDVQVISPR 90 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~---g~~V~vie~~ 90 (515)
.++|+||||||||+++|..|++. |++|+|+|+.
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 57999999999999999999987 9999999984
No 202
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.17 E-value=7.1e-06 Score=83.81 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=31.8
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCC
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPR 90 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~ 90 (515)
.++|+||||||+|+++|..|++.|++|+|||+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 579999999999999999999999999999997
No 203
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.16 E-value=1e-05 Score=84.22 Aligned_cols=101 Identities=26% Similarity=0.398 Sum_probs=75.7
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEE
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~ 136 (515)
.+++|+|||+|+.|+.+|..|+..|.+|+|+++.+.+. +.. ..++...+.+.+++.|+++. .+.++..
T Consensus 157 ~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-----~~~------~~~~~~~l~~~l~~~gV~v~-~~~~v~~ 224 (441)
T PRK08010 157 LPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL-----PRE------DRDIADNIATILRDQGVDII-LNAHVER 224 (441)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC-----CCc------CHHHHHHHHHHHHhCCCEEE-eCCEEEE
Confidence 35799999999999999999999999999999875432 111 12334456777888898874 5778988
Q ss_pred EecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCC
Q 010217 137 IDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (515)
Q Consensus 137 id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~ 178 (515)
++.++..+.+... ++ ++.+|.|++|+|.+|+..
T Consensus 225 i~~~~~~v~v~~~------~g---~i~~D~vl~a~G~~pn~~ 257 (441)
T PRK08010 225 ISHHENQVQVHSE------HA---QLAVDALLIASGRQPATA 257 (441)
T ss_pred EEEcCCEEEEEEc------CC---eEEeCEEEEeecCCcCCC
Confidence 8876655555432 11 588999999999998764
No 204
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.16 E-value=3.8e-05 Score=73.03 Aligned_cols=54 Identities=19% Similarity=0.155 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhcCCeEEEcCcEEEEEe--CCeEEEEecCCCceEEEecCeEEEccC
Q 010217 279 RITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTG 332 (515)
Q Consensus 279 ~~~~~~~~~l~~~gV~v~~~~~v~~i~--~~~v~~~~~~~G~~~~i~~D~vi~a~G 332 (515)
.+.+.+...+++.|..++.+-+|...+ .+.|+...+.+...+.+.+|..|+|+|
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsG 314 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASG 314 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeecc
Confidence 466778889999999999999998875 566776666667666688999999999
No 205
>PRK07121 hypothetical protein; Validated
Probab=98.15 E-value=1.5e-05 Score=84.07 Aligned_cols=39 Identities=23% Similarity=0.156 Sum_probs=35.2
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCcc
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAF 95 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~ 95 (515)
...||||||+|.||++||.++++.|.+|+|+|+....++
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG 57 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGG 57 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCC
Confidence 468999999999999999999999999999999876544
No 206
>PRK06996 hypothetical protein; Provisional
Probab=98.15 E-value=9.8e-06 Score=83.17 Aligned_cols=38 Identities=21% Similarity=0.365 Sum_probs=33.1
Q ss_pred CCCCCCeEEEECCcHHHHHHHHhccCCC----CeEEEEcCCC
Q 010217 54 MGIKKKKVVVLGTGWAGTSFLKNLNNPS----YDVQVISPRN 91 (515)
Q Consensus 54 ~~~~~~~VvIIGgG~AGlsaA~~L~~~g----~~V~vie~~~ 91 (515)
+..+.++|+||||||+|+++|..|++.| .+|+|+|+.+
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 4566789999999999999999999876 5799999864
No 207
>PRK06753 hypothetical protein; Provisional
Probab=98.15 E-value=6.3e-06 Score=83.82 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=31.9
Q ss_pred CeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCC
Q 010217 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (515)
Q Consensus 59 ~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~ 92 (515)
++|+|||||+||+++|..|++.|++|+|+|+++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 4899999999999999999999999999998865
No 208
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.14 E-value=1.3e-05 Score=83.87 Aligned_cols=33 Identities=33% Similarity=0.521 Sum_probs=31.3
Q ss_pred CeEEEECCcHHHHHHHHhccCCCCeEEEEcCCC
Q 010217 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (515)
Q Consensus 59 ~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~ 91 (515)
+||||||+|.|||+||..+++.|.+|+|||+.+
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 799999999999999999999999999999864
No 209
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.13 E-value=9e-06 Score=84.69 Aligned_cols=102 Identities=19% Similarity=0.262 Sum_probs=73.4
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEEE
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~i 137 (515)
+++|+|||||+.|+.+|..|+..|.+|+|+++.+.+. +.. ..++...+.+.+++.|+++. .+..+..+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il-----~~~------d~~~~~~~~~~l~~~gI~i~-~~~~v~~i 233 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-----RSF------DSMISETITEEYEKEGINVH-KLSKPVKV 233 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-----ccc------CHHHHHHHHHHHHHcCCEEE-cCCEEEEE
Confidence 5799999999999999999999999999999876532 111 11344556777888898873 56788888
Q ss_pred ecCCC-EEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCC
Q 010217 138 DAENK-KVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (515)
Q Consensus 138 d~~~~-~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~ 178 (515)
..+.. .+.+... ++ ...+.+|.|++|+|..|+..
T Consensus 234 ~~~~~~~~~v~~~------~g-~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 234 EKTVEGKLVIHFE------DG-KSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred EEeCCceEEEEEC------CC-cEEEEcCEEEEeeCCCcCcc
Confidence 75432 2322211 11 13699999999999998765
No 210
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.13 E-value=8.2e-05 Score=70.93 Aligned_cols=135 Identities=19% Similarity=0.220 Sum_probs=84.9
Q ss_pred eEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccc----------c-------------------
Q 010217 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN----------M------------------- 275 (515)
Q Consensus 225 ~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~----------~------------------- 275 (515)
.|+|||+|++|+-+|..+++. +.+|.++++...+.. .
T Consensus 23 DVvIVGgGpAGL~aA~~la~~--------------G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~ 88 (254)
T TIGR00292 23 DVIIVGAGPSGLTAAYYLAKN--------------GLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYE 88 (254)
T ss_pred CEEEECCCHHHHHHHHHHHHC--------------CCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCee
Confidence 899999999999999999874 678888888754310 0
Q ss_pred ---------ccHHHHHHHHHHhhcCCeEEEcCcEEEEEe--CC--eEEEEecC------CC---ceEEEecCeEEEccCC
Q 010217 276 ---------FDKRITAFAEEKFSRDGIDVKLGSMVVKVT--DK--EIFTKVRG------NG---ETSSMPYGMVVWSTGI 333 (515)
Q Consensus 276 ---------~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~~--~v~~~~~~------~G---~~~~i~~D~vi~a~G~ 333 (515)
...++.+.+.+.+.+.|++++.++.+.++. ++ .+..+... .| +..++.++.||.|||.
T Consensus 89 ~~~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~ 168 (254)
T TIGR00292 89 DEGDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGH 168 (254)
T ss_pred eccCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecC
Confidence 112344555666778899999999999875 23 23332211 12 2346999999999994
Q ss_pred CCccchHHHHHHhCCC--C-----CCce--------eeCCCccccCCCCEEEeccccc
Q 010217 334 APHAIIKDFMKQVGQT--N-----RRAL--------ATDEWLRVEGSDSIYALGDCAT 376 (515)
Q Consensus 334 ~~~p~~~~l~~~~~~~--~-----~g~i--------~vd~~l~t~~~~~IyA~GD~~~ 376 (515)
..+....+.+.+++. . .+.. +|+.+-+ -+|++|++|=.+.
T Consensus 169 -~a~v~~~l~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~--~~~g~~~~gm~~~ 223 (254)
T TIGR00292 169 -DAEIVAVCAKKIVLEDQVPKLGGEKSMWAEVAEVAIHENTRE--VVPNLYVAGMAVA 223 (254)
T ss_pred -CchHHHHHHHHcCcccCCcccCCchhhhhhhhHHHHHhccCc--ccCCEEEechhhh
Confidence 223333334444431 1 0111 1222223 2899999996554
No 211
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.13 E-value=6.8e-06 Score=83.93 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=31.3
Q ss_pred CeEEEECCcHHHHHHHHhccCCCCeEEEEcCCC
Q 010217 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (515)
Q Consensus 59 ~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~ 91 (515)
+||+||||||+|+++|..|++.|++|+|||+.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 699999999999999999999999999999764
No 212
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.12 E-value=1.5e-05 Score=83.55 Aligned_cols=102 Identities=15% Similarity=0.277 Sum_probs=74.2
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEEE
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~i 137 (515)
+++++|||+|+.|+.+|..|++.|.+|++|++.+.+... . ..++...+.+.+++.|+++ +.+.++..+
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~-----~------d~~~~~~l~~~L~~~gV~i-~~~~~v~~v 244 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG-----E------DADAAEVLEEVFARRGMTV-LKRSRAESV 244 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC-----C------CHHHHHHHHHHHHHCCcEE-EcCCEEEEE
Confidence 479999999999999999999999999999987653211 0 1133345677788889887 346788888
Q ss_pred ecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCC
Q 010217 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (515)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ 179 (515)
+..++.+.+.... + .++.+|.|++|+|..|+...
T Consensus 245 ~~~~~~~~v~~~~-----g---~~l~~D~vl~a~G~~pn~~~ 278 (466)
T PRK07845 245 ERTGDGVVVTLTD-----G---RTVEGSHALMAVGSVPNTAG 278 (466)
T ss_pred EEeCCEEEEEECC-----C---cEEEecEEEEeecCCcCCCC
Confidence 6544444443211 1 17899999999999987653
No 213
>PLN02507 glutathione reductase
Probab=98.11 E-value=1.6e-05 Score=83.87 Aligned_cols=102 Identities=15% Similarity=0.169 Sum_probs=74.9
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEEE
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~i 137 (515)
.++|+|||||+.|+.+|..|+..|.+|+|+++.+... +. ...++...+.+.+++.|+++. .+.++..+
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l-----~~------~d~~~~~~l~~~l~~~GI~i~-~~~~V~~i 270 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL-----RG------FDDEMRAVVARNLEGRGINLH-PRTNLTQL 270 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC-----cc------cCHHHHHHHHHHHHhCCCEEE-eCCEEEEE
Confidence 5799999999999999999999999999999875421 11 112344556677888898874 57788888
Q ss_pred ecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCC
Q 010217 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (515)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ 179 (515)
+..++.+.+.... + .++++|.|++|+|.+|+...
T Consensus 271 ~~~~~~~~v~~~~-----g---~~i~~D~vl~a~G~~pn~~~ 304 (499)
T PLN02507 271 TKTEGGIKVITDH-----G---EEFVADVVLFATGRAPNTKR 304 (499)
T ss_pred EEeCCeEEEEECC-----C---cEEEcCEEEEeecCCCCCCC
Confidence 7654444444321 1 17999999999999987653
No 214
>PLN02985 squalene monooxygenase
Probab=98.11 E-value=2.3e-05 Score=82.69 Aligned_cols=37 Identities=22% Similarity=0.317 Sum_probs=33.5
Q ss_pred CCCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCC
Q 010217 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (515)
Q Consensus 55 ~~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~ 91 (515)
....+||+|||||++|+++|..|++.|++|+|+|+..
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 3456799999999999999999999999999999864
No 215
>PRK05868 hypothetical protein; Validated
Probab=98.10 E-value=1.2e-05 Score=81.61 Aligned_cols=36 Identities=31% Similarity=0.333 Sum_probs=32.8
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCC
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYF 93 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~ 93 (515)
+++|+|||||++|+++|..|++.|++|+|||+.+..
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 368999999999999999999999999999987643
No 216
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.10 E-value=1.5e-05 Score=82.85 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=32.6
Q ss_pred eEEEECCcHHHHHHHHhccCCC-CeEEEEcCCCCCcc
Q 010217 60 KVVVLGTGWAGTSFLKNLNNPS-YDVQVISPRNYFAF 95 (515)
Q Consensus 60 ~VvIIGgG~AGlsaA~~L~~~g-~~V~vie~~~~~~~ 95 (515)
||||||+|.||++||..+++.| .+|+|+|+.+..++
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg 37 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGG 37 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCC
Confidence 6999999999999999999999 99999998876543
No 217
>PRK07538 hypothetical protein; Provisional
Probab=98.09 E-value=1.1e-05 Score=83.14 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=31.8
Q ss_pred CeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCC
Q 010217 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (515)
Q Consensus 59 ~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~ 92 (515)
++|+|||||+||+++|..|++.|++|+|+|+.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 4899999999999999999999999999998764
No 218
>PRK13748 putative mercuric reductase; Provisional
Probab=98.09 E-value=1.6e-05 Score=85.42 Aligned_cols=99 Identities=13% Similarity=0.214 Sum_probs=73.9
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEEE
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~i 137 (515)
+++|+|||||+.|+.+|..|++.|.+|+||++... ++.. ..++...+.+.+++.|+++ +.+..+..+
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~------l~~~------d~~~~~~l~~~l~~~gI~i-~~~~~v~~i 336 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTL------FFRE------DPAIGEAVTAAFRAEGIEV-LEHTQASQV 336 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcc------cccc------CHHHHHHHHHHHHHCCCEE-EcCCEEEEE
Confidence 57999999999999999999999999999997531 1110 1234455677788889887 357788888
Q ss_pred ecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCC
Q 010217 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (515)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~ 178 (515)
+.++..+.+... ++ ++.+|.|++|+|..|+..
T Consensus 337 ~~~~~~~~v~~~------~~---~i~~D~vi~a~G~~pn~~ 368 (561)
T PRK13748 337 AHVDGEFVLTTG------HG---ELRADKLLVATGRAPNTR 368 (561)
T ss_pred EecCCEEEEEec------CC---eEEeCEEEEccCCCcCCC
Confidence 765555554431 11 689999999999998864
No 219
>PRK14727 putative mercuric reductase; Provisional
Probab=98.08 E-value=1.7e-05 Score=83.25 Aligned_cols=100 Identities=12% Similarity=0.211 Sum_probs=73.3
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEEE
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~i 137 (515)
+++|+|||+|+.|+.+|..|+..|.+|+|+++... ++.. ..++...+.+.+++.|+++ +.+.++..+
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~------l~~~------d~~~~~~l~~~L~~~GV~i-~~~~~V~~i 254 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTL------LFRE------DPLLGETLTACFEKEGIEV-LNNTQASLV 254 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC------CCcc------hHHHHHHHHHHHHhCCCEE-EcCcEEEEE
Confidence 57999999999999999999999999999986421 1111 1134455677788889887 346788888
Q ss_pred ecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCC
Q 010217 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (515)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ 179 (515)
+..+..+.+... ++ ++.+|.+|+|+|..|+...
T Consensus 255 ~~~~~~~~v~~~------~g---~i~aD~VlvA~G~~pn~~~ 287 (479)
T PRK14727 255 EHDDNGFVLTTG------HG---ELRAEKLLISTGRHANTHD 287 (479)
T ss_pred EEeCCEEEEEEc------CC---eEEeCEEEEccCCCCCccC
Confidence 765555555432 11 6889999999999987653
No 220
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.07 E-value=0.00017 Score=68.93 Aligned_cols=90 Identities=12% Similarity=0.205 Sum_probs=61.5
Q ss_pred HHHHHhhCcc-cC-CCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEe----CCeEEEEecCCCceE
Q 010217 247 DEDLFKLYPK-VK-DSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVT----DKEIFTKVRGNGETS 320 (515)
Q Consensus 247 ~~~~~~~~p~-~~-~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~----~~~v~~~~~~~G~~~ 320 (515)
.+++.++||. .+ +.-.+-+++....+. ......+.++..+++.|+.|+.+..++.++ ++....+.+.+|..
T Consensus 122 seEvrk~fP~~~~l~d~~~G~~n~~gGvi--~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~- 198 (399)
T KOG2820|consen 122 SEEVRKRFPSNIPLPDGWQGVVNESGGVI--NAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSI- 198 (399)
T ss_pred HHHHHHhCCCCccCCcchhhcccccccEe--eHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCe-
Confidence 4567788994 21 222344443333222 234566788899999999999999999887 45555555577885
Q ss_pred EEecCeEEEccCCCCccchHHHHH
Q 010217 321 SMPYGMVVWSTGIAPHAIIKDFMK 344 (515)
Q Consensus 321 ~i~~D~vi~a~G~~~~p~~~~l~~ 344 (515)
+.++-+|+++| +++..|+.
T Consensus 199 -Y~akkiI~t~G----aWi~klL~ 217 (399)
T KOG2820|consen 199 -YHAKKIIFTVG----AWINKLLP 217 (399)
T ss_pred -eecceEEEEec----HHHHhhcC
Confidence 88999999999 55556655
No 221
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.07 E-value=3e-06 Score=88.20 Aligned_cols=43 Identities=37% Similarity=0.501 Sum_probs=39.6
Q ss_pred CCCCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccC
Q 010217 54 MGIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT 96 (515)
Q Consensus 54 ~~~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~ 96 (515)
....+++|+|||||+|||+||+.|...|++|+|+|.++..||.
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGR 53 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGR 53 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCce
Confidence 4455789999999999999999999999999999999999986
No 222
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.07 E-value=8.4e-05 Score=71.24 Aligned_cols=40 Identities=23% Similarity=0.313 Sum_probs=35.7
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCC
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~ 97 (515)
..++|+|||+|++||+||..|. ..++|||+|...+.|++.
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls-~rhdVTLfEA~~rlGGha 46 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLS-RRHDVTLFEADRRLGGHA 46 (447)
T ss_pred CCcceEEEcccchhhhhHHhhh-cccceEEEeccccccCcc
Confidence 4689999999999999999885 558999999999999875
No 223
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.07 E-value=1.7e-05 Score=83.17 Aligned_cols=101 Identities=21% Similarity=0.252 Sum_probs=70.9
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEEE
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~i 137 (515)
+++++|||||+.|+.+|..|++.|.+|+|+++. . +++.. ..++...+.+.+++.|+++. .+..+..+
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~-----~l~~~------d~~~~~~l~~~L~~~gV~i~-~~~~v~~v 246 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-I-----LLRGF------DQDCANKVGEHMEEHGVKFK-RQFVPIKV 246 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-c-----ccccc------CHHHHHHHHHHHHHcCCEEE-eCceEEEE
Confidence 468999999999999999999999999999863 2 11111 12344456677888898874 46666677
Q ss_pred ecCCCE--EEEeeCCccCCCCCceEEeecCEEEEccCCCcCCC
Q 010217 138 DAENKK--VYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (515)
Q Consensus 138 d~~~~~--v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~ 178 (515)
...+.. +.+.++. ...++++|.|++|+|..|+..
T Consensus 247 ~~~~~~~~v~~~~~~-------~~~~i~~D~vl~a~G~~pn~~ 282 (484)
T TIGR01438 247 EQIEAKVKVTFTDST-------NGIEEEYDTVLLAIGRDACTR 282 (484)
T ss_pred EEcCCeEEEEEecCC-------cceEEEeCEEEEEecCCcCCC
Confidence 644433 3333221 123789999999999998764
No 224
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.06 E-value=0.00023 Score=70.95 Aligned_cols=78 Identities=18% Similarity=0.241 Sum_probs=61.6
Q ss_pred cccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEe--CCeEEEEecCCCceEEEecCeEEEccCCCCccchHHHHHHh
Q 010217 269 ADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQV 346 (515)
Q Consensus 269 ~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~ 346 (515)
.+++....-+.+.+-+.+.+++.|++++++++|..++ ++.+..+.+++|++ +++|.||+|+|...+.+...+.+++
T Consensus 164 ~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~--i~~~~vvlA~Grsg~dw~~~l~~K~ 241 (486)
T COG2509 164 QRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEE--IEADYVVLAPGRSGRDWFEMLHKKL 241 (486)
T ss_pred ccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcE--EecCEEEEccCcchHHHHHHHHHhc
Confidence 3444444556788889999999999999999998886 34466777778875 9999999999976666666777777
Q ss_pred CC
Q 010217 347 GQ 348 (515)
Q Consensus 347 ~~ 348 (515)
|+
T Consensus 242 Gv 243 (486)
T COG2509 242 GV 243 (486)
T ss_pred Cc
Confidence 77
No 225
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.06 E-value=2.4e-05 Score=82.06 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=32.3
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCC
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~ 91 (515)
..||||||+|+||++||..+++.|.+|+|||+.+
T Consensus 4 ~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~ 37 (466)
T PRK08274 4 MVDVLVIGGGNAALCAALAAREAGASVLLLEAAP 37 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 5799999999999999999999999999999976
No 226
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.06 E-value=1.8e-05 Score=80.86 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=32.8
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCC
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~ 92 (515)
.++|+||||||+|+++|..|++.|++|+|||+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 57999999999999999999999999999998864
No 227
>PRK08013 oxidoreductase; Provisional
Probab=98.06 E-value=1.7e-05 Score=81.51 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=32.6
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCC
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~ 92 (515)
.++|+||||||+|+++|..|++.|++|+|||+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 47999999999999999999999999999998764
No 228
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.05 E-value=7.4e-06 Score=82.16 Aligned_cols=97 Identities=18% Similarity=0.291 Sum_probs=73.4
Q ss_pred CCeEEEECCcHHHHHHHHhccC-------------CCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcC
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNN-------------PSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKN 124 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~-------------~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 124 (515)
..+++|||||+.|+..|-.|+. ...+|+|||+.+.+. |.+ +.++....++.+++.|
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL--p~~---------~~~l~~~a~~~L~~~G 223 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL--PMF---------PPKLSKYAERALEKLG 223 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc--cCC---------CHHHHHHHHHHHHHCC
Confidence 4579999999999999988861 124899999987643 111 2245556788899999
Q ss_pred ceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCC
Q 010217 125 VDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANT 177 (515)
Q Consensus 125 i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~ 177 (515)
|++. +++.|+.++++ .|+++++. + +++++.+|.|+|.+++.
T Consensus 224 V~v~-l~~~Vt~v~~~--~v~~~~g~--------~-~I~~~tvvWaaGv~a~~ 264 (405)
T COG1252 224 VEVL-LGTPVTEVTPD--GVTLKDGE--------E-EIPADTVVWAAGVRASP 264 (405)
T ss_pred CEEE-cCCceEEECCC--cEEEccCC--------e-eEecCEEEEcCCCcCCh
Confidence 9984 68899999876 66666532 1 59999999999988654
No 229
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.05 E-value=1.7e-05 Score=88.14 Aligned_cols=100 Identities=22% Similarity=0.311 Sum_probs=72.7
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEEE
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~i 137 (515)
.++++|||||+.|+.+|..|++.|.+|+|+++.+.+. +. .. .......+...+++.||++. .+..++.+
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll-----~~----~l-d~~~~~~l~~~l~~~GV~v~-~~~~v~~i 208 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLM-----AK----QL-DQTAGRLLQRELEQKGLTFL-LEKDTVEI 208 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchh-----hh----hc-CHHHHHHHHHHHHHcCCEEE-eCCceEEE
Confidence 5789999999999999999999999999999875421 10 01 11233445677888898874 46677788
Q ss_pred ecCCC--EEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCC
Q 010217 138 DAENK--KVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (515)
Q Consensus 138 d~~~~--~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~ 178 (515)
..+.. .|.+.++. .+++|.||+|+|.+|+..
T Consensus 209 ~~~~~~~~v~~~dG~----------~i~~D~Vi~a~G~~Pn~~ 241 (785)
T TIGR02374 209 VGATKADRIRFKDGS----------SLEADLIVMAAGIRPNDE 241 (785)
T ss_pred EcCCceEEEEECCCC----------EEEcCEEEECCCCCcCcH
Confidence 65543 34444332 799999999999998754
No 230
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.05 E-value=1.7e-05 Score=82.05 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=30.9
Q ss_pred eEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCcc
Q 010217 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAF 95 (515)
Q Consensus 60 ~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~ 95 (515)
||||||+|.||++||+.+++.|.+|+|||+.+..++
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg 36 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGG 36 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGS
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccccc
Confidence 799999999999999999999999999999876443
No 231
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.05 E-value=2.7e-05 Score=81.22 Aligned_cols=101 Identities=17% Similarity=0.237 Sum_probs=71.0
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEEE
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~i 137 (515)
+++++|||||+.|+.+|..|++.|.+|+||++.+.+. +.. ..++...+.+.+ +.++++ +.+.++..+
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll-----~~~------d~~~~~~l~~~~-~~gI~i-~~~~~V~~i 235 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL-----RHL------DEDISDRFTEIA-KKKWDI-RLGRNVTAV 235 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc-----ccc------CHHHHHHHHHHH-hcCCEE-EeCCEEEEE
Confidence 5799999999999999999999999999999876532 110 112233344433 356776 357788888
Q ss_pred ecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCC
Q 010217 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (515)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ 179 (515)
+.+++.+.+... ++ .++++|.|++|+|.+|+...
T Consensus 236 ~~~~~~v~v~~~------~g--~~i~~D~vl~a~G~~pn~~~ 269 (452)
T TIGR03452 236 EQDGDGVTLTLD------DG--STVTADVLLVATGRVPNGDL 269 (452)
T ss_pred EEcCCeEEEEEc------CC--CEEEcCEEEEeeccCcCCCC
Confidence 866554444321 11 17999999999999987643
No 232
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.05 E-value=2e-05 Score=82.56 Aligned_cols=102 Identities=20% Similarity=0.350 Sum_probs=71.7
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEEE
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~i 137 (515)
+++|+|||||+.|+.+|..|.+.|.+|+||++.+.+. +.. ..++...+.+.+++. +++ +.+.++..+
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il-----~~~------d~~~~~~~~~~l~~~-v~i-~~~~~v~~i 240 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI-----PAA------DKDIVKVFTKRIKKQ-FNI-MLETKVTAV 240 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC-----CcC------CHHHHHHHHHHHhhc-eEE-EcCCEEEEE
Confidence 5799999999999999999999999999999886532 110 113333455556555 776 357788888
Q ss_pred ecCCCEEEE--eeCCccCCCCCceEEeecCEEEEccCCCcCCC
Q 010217 138 DAENKKVYC--RSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (515)
Q Consensus 138 d~~~~~v~~--~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~ 178 (515)
...+..+.+ .++. ++..++++|.||+|+|.+|+..
T Consensus 241 ~~~~~~~~v~~~~~~------~~~~~i~~D~vi~a~G~~pn~~ 277 (471)
T PRK06467 241 EAKEDGIYVTMEGKK------APAEPQRYDAVLVAVGRVPNGK 277 (471)
T ss_pred EEcCCEEEEEEEeCC------CcceEEEeCEEEEeecccccCC
Confidence 755444433 2221 1124699999999999998765
No 233
>PRK10262 thioredoxin reductase; Provisional
Probab=98.04 E-value=2.5e-05 Score=77.62 Aligned_cols=104 Identities=22% Similarity=0.289 Sum_probs=74.1
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEE
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~ 136 (515)
..++|+|||+|..|+.+|..|++.+.+|+++++.+.+... ..+...+.+.+++.++++ +.+..+..
T Consensus 145 ~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~~-------------~~~~~~~~~~l~~~gV~i-~~~~~v~~ 210 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAE-------------KILIKRLMDKVENGNIIL-HTNRTLEE 210 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCCC-------------HHHHHHHHhhccCCCeEE-EeCCEEEE
Confidence 3579999999999999999999999999999987643210 112233556667778776 35678888
Q ss_pred EecCCC---EEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCC
Q 010217 137 IDAENK---KVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (515)
Q Consensus 137 id~~~~---~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~ 178 (515)
+..++. .|.+.+... ++...++++|.||+++|..|+..
T Consensus 211 v~~~~~~~~~v~~~~~~~----~~~~~~i~~D~vv~a~G~~p~~~ 251 (321)
T PRK10262 211 VTGDQMGVTGVRLRDTQN----SDNIESLDVAGLFVAIGHSPNTA 251 (321)
T ss_pred EEcCCccEEEEEEEEcCC----CCeEEEEECCEEEEEeCCccChh
Confidence 876542 355544320 12234799999999999998754
No 234
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.04 E-value=1.4e-05 Score=81.30 Aligned_cols=32 Identities=16% Similarity=0.347 Sum_probs=30.6
Q ss_pred CeEEEECCcHHHHHHHHhccCCCCeEEEEcCC
Q 010217 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPR 90 (515)
Q Consensus 59 ~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~ 90 (515)
.+|+||||||+|+++|..|++.|++|+|+|+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 68999999999999999999999999999975
No 235
>PTZ00058 glutathione reductase; Provisional
Probab=98.04 E-value=2.7e-05 Score=82.68 Aligned_cols=102 Identities=19% Similarity=0.351 Sum_probs=73.5
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEEE
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~i 137 (515)
+++|+|||||+.|+.+|..|+..|.+|+|+++.+.+. +.. ..++...+.+.+++.|+++ +.+.++..+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il-----~~~------d~~i~~~l~~~L~~~GV~i-~~~~~V~~I 304 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL-----RKF------DETIINELENDMKKNNINI-ITHANVEEI 304 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc-----ccC------CHHHHHHHHHHHHHCCCEE-EeCCEEEEE
Confidence 6899999999999999999999999999999876422 111 1234455667788889887 457778888
Q ss_pred ecCCC-EEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCC
Q 010217 138 DAENK-KVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (515)
Q Consensus 138 d~~~~-~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~ 178 (515)
+..+. .+.+.... + ..++++|.|++|+|.+|+..
T Consensus 305 ~~~~~~~v~v~~~~-----~--~~~i~aD~VlvA~Gr~Pn~~ 339 (561)
T PTZ00058 305 EKVKEKNLTIYLSD-----G--RKYEHFDYVIYCVGRSPNTE 339 (561)
T ss_pred EecCCCcEEEEECC-----C--CEEEECCEEEECcCCCCCcc
Confidence 75432 23322111 1 13699999999999988754
No 236
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.04 E-value=2.2e-05 Score=82.24 Aligned_cols=104 Identities=22% Similarity=0.287 Sum_probs=74.3
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEE
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~ 136 (515)
.+++|+|||+|+.|+.+|..|++.|.+|+|+++.+.+.. . ...++...+.+.+++. +++ +.+.++..
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-----~------~d~~~~~~~~~~l~~~-I~i-~~~~~v~~ 234 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP-----L------EDPEVSKQAQKILSKE-FKI-KLGAKVTS 234 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc-----c------hhHHHHHHHHHHHhhc-cEE-EcCCEEEE
Confidence 357999999999999999999999999999998865321 1 1123444556667777 887 35778888
Q ss_pred EecCCC-EEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCC
Q 010217 137 IDAENK-KVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (515)
Q Consensus 137 id~~~~-~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ 179 (515)
++..++ .+.+... +++..++.+|.|++|+|..|+...
T Consensus 235 i~~~~~~~v~~~~~------~~~~~~i~~D~vi~a~G~~p~~~~ 272 (460)
T PRK06292 235 VEKSGDEKVEELEK------GGKTETIEADYVLVATGRRPNTDG 272 (460)
T ss_pred EEEcCCceEEEEEc------CCceEEEEeCEEEEccCCccCCCC
Confidence 876543 4444211 112347999999999999988653
No 237
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.03 E-value=4.9e-05 Score=78.59 Aligned_cols=81 Identities=19% Similarity=0.259 Sum_probs=59.0
Q ss_pred cHHHHHHHHHHhhcCCeEEEcCcEEEEEeC-C---eEEEEecCCCceEEEecCeEEEccCCCCccchHHHHHHhCC----
Q 010217 277 DKRITAFAEEKFSRDGIDVKLGSMVVKVTD-K---EIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ---- 348 (515)
Q Consensus 277 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~-~---~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~~~---- 348 (515)
|..+.-.......++|-+++..++|+.+.. + +|.+.+..+|++.++.++.||-|+| |+..++++..+.
T Consensus 163 daRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaG----pW~d~i~~~~~~~~~~ 238 (532)
T COG0578 163 DARLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAG----PWVDEILEMAGLEQSP 238 (532)
T ss_pred hHHHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCC----ccHHHHHHhhcccCCC
Confidence 345556666778889999999999999863 3 3566666778888999999999999 777677665532
Q ss_pred -----CCCC-ceeeCCCcc
Q 010217 349 -----TNRR-ALATDEWLR 361 (515)
Q Consensus 349 -----~~~g-~i~vd~~l~ 361 (515)
...| .|+++.++.
T Consensus 239 ~~~vr~skGsHlVv~~~~~ 257 (532)
T COG0578 239 HIGVRPSKGSHLVVDKKFP 257 (532)
T ss_pred CccceeccceEEEecccCC
Confidence 2344 466777443
No 238
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.03 E-value=1.7e-05 Score=88.16 Aligned_cols=100 Identities=18% Similarity=0.259 Sum_probs=72.7
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEE
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~ 136 (515)
..++++|||||+.|+.+|..|+..|.+|+||+..+.+. +.. + .......+.+.+++.||++. .+..+..
T Consensus 144 ~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll-----~~~----l-d~~~~~~l~~~L~~~GV~v~-~~~~v~~ 212 (847)
T PRK14989 144 RSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLM-----AEQ----L-DQMGGEQLRRKIESMGVRVH-TSKNTLE 212 (847)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccch-----hhh----c-CHHHHHHHHHHHHHCCCEEE-cCCeEEE
Confidence 35789999999999999999999999999999875421 100 1 11333446777888999874 5777888
Q ss_pred EecCC--C--EEEEeeCCccCCCCCceEEeecCEEEEccCCCcCC
Q 010217 137 IDAEN--K--KVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANT 177 (515)
Q Consensus 137 id~~~--~--~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~ 177 (515)
|..++ . .+.+.++. ++.+|.||+|+|.+|+.
T Consensus 213 I~~~~~~~~~~v~~~dG~----------~i~~D~Vv~A~G~rPn~ 247 (847)
T PRK14989 213 IVQEGVEARKTMRFADGS----------ELEVDFIVFSTGIRPQD 247 (847)
T ss_pred EEecCCCceEEEEECCCC----------EEEcCEEEECCCcccCc
Confidence 86432 2 23343322 79999999999999875
No 239
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.03 E-value=3.1e-05 Score=81.81 Aligned_cols=36 Identities=14% Similarity=0.327 Sum_probs=33.2
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCC
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~ 92 (515)
..+||||||||..|+++|+.|++.|++|+|||+++.
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~ 40 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDL 40 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 358999999999999999999999999999998754
No 240
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.03 E-value=4.2e-05 Score=82.88 Aligned_cols=36 Identities=36% Similarity=0.553 Sum_probs=32.5
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCC
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~ 92 (515)
...||||||+|.|||+||..+++.|.+|+|||+...
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~ 69 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDS 69 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 457999999999999999999999999999997543
No 241
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.02 E-value=2.2e-05 Score=82.28 Aligned_cols=100 Identities=17% Similarity=0.271 Sum_probs=71.3
Q ss_pred CCCeEEEECCcHHHHHHHHhcc---CCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeE
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLN---NPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAE 133 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~---~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~ 133 (515)
.+++|+|||||+.|+.+|..+. ..|.+|+|+++.+.+. +.. ..++...+.+.+++.|+++. .+..
T Consensus 186 ~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il-----~~~------d~~~~~~l~~~L~~~GI~i~-~~~~ 253 (486)
T TIGR01423 186 PPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL-----RGF------DSTLRKELTKQLRANGINIM-TNEN 253 (486)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc-----ccc------CHHHHHHHHHHHHHcCCEEE-cCCE
Confidence 3579999999999999996553 4599999999876532 111 12444556777888998874 5677
Q ss_pred EEEEecCC-C--EEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCC
Q 010217 134 CFKIDAEN-K--KVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (515)
Q Consensus 134 v~~id~~~-~--~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~ 178 (515)
+..+.... . .+.+.++. ++++|.|++|+|..|+..
T Consensus 254 v~~i~~~~~~~~~v~~~~g~----------~i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 254 PAKVTLNADGSKHVTFESGK----------TLDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred EEEEEEcCCceEEEEEcCCC----------EEEcCEEEEeeCCCcCcc
Confidence 88887532 2 33433221 799999999999998764
No 242
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.01 E-value=1.8e-05 Score=76.59 Aligned_cols=106 Identities=14% Similarity=0.240 Sum_probs=82.4
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEE
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECF 135 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~ 135 (515)
..+++++|||||.-||....-..+.|.+||+||-.+..+.. + ..++...++..+.+.|+++ .+.++|.
T Consensus 209 ~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~-m----------D~Eisk~~qr~L~kQgikF-~l~tkv~ 276 (506)
T KOG1335|consen 209 EVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV-M----------DGEISKAFQRVLQKQGIKF-KLGTKVT 276 (506)
T ss_pred hCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc-c----------CHHHHHHHHHHHHhcCcee-EeccEEE
Confidence 45789999999999999998888999999999977665542 1 1144455678888899887 4688999
Q ss_pred EEecCCC---EEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCC
Q 010217 136 KIDAENK---KVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (515)
Q Consensus 136 ~id~~~~---~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~ 178 (515)
..+.+.. .+.+.+.. +++..++++|.|++|+|-+|.+-
T Consensus 277 ~a~~~~dg~v~i~ve~ak-----~~k~~tle~DvlLVsiGRrP~t~ 317 (506)
T KOG1335|consen 277 SATRNGDGPVEIEVENAK-----TGKKETLECDVLLVSIGRRPFTE 317 (506)
T ss_pred EeeccCCCceEEEEEecC-----CCceeEEEeeEEEEEccCccccc
Confidence 9887765 44555543 55567999999999999998754
No 243
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=4.2e-06 Score=84.91 Aligned_cols=39 Identities=26% Similarity=0.417 Sum_probs=36.9
Q ss_pred CeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCC
Q 010217 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (515)
Q Consensus 59 ~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~ 97 (515)
+||+|+|||+|||+||+.|+..|++|||+|++++.|+..
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~ 39 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKV 39 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCcee
Confidence 589999999999999999999999999999999999863
No 244
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.00 E-value=0.0001 Score=73.56 Aligned_cols=71 Identities=24% Similarity=0.312 Sum_probs=54.4
Q ss_pred ccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccccc-------ccHH------HHHHHHHHh
Q 010217 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM-------FDKR------ITAFAEEKF 288 (515)
Q Consensus 222 ~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~-------~~~~------~~~~~~~~l 288 (515)
-.++++|||||.+|++.|.+|++. |.+|+++++.+.+... |+.. +.-.+.+.-
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~--------------G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~ 188 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADM--------------GFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVS 188 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHc--------------CCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhc
Confidence 467999999999999999999996 7999999999877432 1111 122334445
Q ss_pred hcCCeEEEcCcEEEEEeC
Q 010217 289 SRDGIDVKLGSMVVKVTD 306 (515)
Q Consensus 289 ~~~gV~v~~~~~v~~i~~ 306 (515)
...+|++++.++|+++.+
T Consensus 189 ~hp~i~l~TyaeV~ev~G 206 (622)
T COG1148 189 NHPNIELITYAEVEEVSG 206 (622)
T ss_pred cCCceeeeeeeeeeeecc
Confidence 567999999999999754
No 245
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.00 E-value=3.4e-05 Score=81.32 Aligned_cols=101 Identities=18% Similarity=0.205 Sum_probs=70.3
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEEE
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~i 137 (515)
+++|+|||||+.|+.+|..|+..|.+|+|+++... ++.. ..++...+.+.+++.|+++ +.+..+..+
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~------l~~~------d~~~~~~l~~~l~~~GV~i-~~~~~v~~v 248 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIP------LRGF------DRQCSEKVVEYMKEQGTLF-LEGVVPINI 248 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcc------cccC------CHHHHHHHHHHHHHcCCEE-EcCCeEEEE
Confidence 46999999999999999999999999999986321 1111 1133455677788889887 346667777
Q ss_pred ecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCC
Q 010217 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (515)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ 179 (515)
...+..+.+... +++ ++.+|.|++|+|.+|+...
T Consensus 249 ~~~~~~~~v~~~------~g~--~i~~D~vl~a~G~~pn~~~ 282 (499)
T PTZ00052 249 EKMDDKIKVLFS------DGT--TELFDTVLYATGRKPDIKG 282 (499)
T ss_pred EEcCCeEEEEEC------CCC--EEEcCEEEEeeCCCCCccc
Confidence 654333333221 111 6899999999999987653
No 246
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.99 E-value=3e-05 Score=79.77 Aligned_cols=33 Identities=21% Similarity=0.432 Sum_probs=31.3
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCC
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPR 90 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~ 90 (515)
.++|+||||||+|+++|..|++.|++|+|+|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 479999999999999999999999999999985
No 247
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.99 E-value=7.2e-05 Score=77.78 Aligned_cols=104 Identities=17% Similarity=0.301 Sum_probs=73.4
Q ss_pred ccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccccc--------------------------
Q 010217 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM-------------------------- 275 (515)
Q Consensus 222 ~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~-------------------------- 275 (515)
..++|+|||+|++|+-+|..|.+. |.+|+++++.+.+...
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~--------------G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y 74 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRRE--------------GHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVY 74 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhc--------------CCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhh
Confidence 346999999999999999999874 6788888776532110
Q ss_pred --------------------------------c--cHHHHHHHHHHhhcCCeE--EEcCcEEEEEeC--CeEEEEecC-C
Q 010217 276 --------------------------------F--DKRITAFAEEKFSRDGID--VKLGSMVVKVTD--KEIFTKVRG-N 316 (515)
Q Consensus 276 --------------------------------~--~~~~~~~~~~~l~~~gV~--v~~~~~v~~i~~--~~v~~~~~~-~ 316 (515)
+ ..++.+++++..++.|+. ++++++|++|+. +...+.... +
T Consensus 75 ~~L~tn~p~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~ 154 (461)
T PLN02172 75 ESLRTNLPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSG 154 (461)
T ss_pred hhhhccCCHhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCC
Confidence 0 035667788888888988 899999999974 333333322 2
Q ss_pred CceEEEecCeEEEccCCCCccch
Q 010217 317 GETSSMPYGMVVWSTGIAPHAII 339 (515)
Q Consensus 317 G~~~~i~~D~vi~a~G~~~~p~~ 339 (515)
+...+..+|.||+|+|....|+.
T Consensus 155 ~~~~~~~~d~VIvAtG~~~~P~~ 177 (461)
T PLN02172 155 GFSKDEIFDAVVVCNGHYTEPNV 177 (461)
T ss_pred CceEEEEcCEEEEeccCCCCCcC
Confidence 33334679999999996445544
No 248
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.99 E-value=2.6e-05 Score=85.38 Aligned_cols=34 Identities=18% Similarity=0.417 Sum_probs=31.7
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCC
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~ 91 (515)
..+|+|||||.+|+++|++|++.|++|+|+|+..
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 3699999999999999999999999999999874
No 249
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.99 E-value=1.8e-05 Score=81.72 Aligned_cols=35 Identities=31% Similarity=0.495 Sum_probs=31.5
Q ss_pred CeEEEECCcHHHHHHHHhccCCC-CeEEEEcCCCCC
Q 010217 59 KKVVVLGTGWAGTSFLKNLNNPS-YDVQVISPRNYF 93 (515)
Q Consensus 59 ~~VvIIGgG~AGlsaA~~L~~~g-~~V~vie~~~~~ 93 (515)
.+|+|||||+|||++|..|++.| ++|+|+|+.+.+
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~ 36 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF 36 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence 47999999999999999999988 599999988654
No 250
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.98 E-value=0.00011 Score=75.03 Aligned_cols=39 Identities=28% Similarity=0.279 Sum_probs=34.8
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCc
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFA 94 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~ 94 (515)
.++++|+|||||.+|+++|++|++.|.+|+|+|+.....
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~ 40 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence 357899999999999999999999999999999876433
No 251
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.98 E-value=4e-05 Score=82.07 Aligned_cols=36 Identities=28% Similarity=0.336 Sum_probs=32.7
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCC
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~ 92 (515)
...||||||+|.||++||..+++.|.+|+|||+.+.
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~ 39 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFP 39 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCC
Confidence 357999999999999999999999999999998754
No 252
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.97 E-value=3.3e-05 Score=79.87 Aligned_cols=94 Identities=18% Similarity=0.246 Sum_probs=70.6
Q ss_pred CeEEEECCcHHHHHHHHhccC--------------CCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcC
Q 010217 59 KKVVVLGTGWAGTSFLKNLNN--------------PSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKN 124 (515)
Q Consensus 59 ~~VvIIGgG~AGlsaA~~L~~--------------~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 124 (515)
++|+|||||+.|+.+|..|+. .+.+|+||++.+.+. +.. ...+.....+.+++.|
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll-----~~~------~~~~~~~~~~~L~~~g 242 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL-----GSF------DQALRKYGQRRLRRLG 242 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc-----ccC------CHHHHHHHHHHHHHCC
Confidence 489999999999999988863 478999999876532 111 1134455677888999
Q ss_pred ceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcC
Q 010217 125 VDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARAN 176 (515)
Q Consensus 125 i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~ 176 (515)
|++. .+.++..++.+ .+.++++. ++++|.+|+++|..|+
T Consensus 243 V~v~-~~~~v~~v~~~--~v~~~~g~----------~i~~d~vi~~~G~~~~ 281 (424)
T PTZ00318 243 VDIR-TKTAVKEVLDK--EVVLKDGE----------VIPTGLVVWSTGVGPG 281 (424)
T ss_pred CEEE-eCCeEEEEeCC--EEEECCCC----------EEEccEEEEccCCCCc
Confidence 8873 57788888754 56665433 7999999999998875
No 253
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.97 E-value=6.1e-05 Score=81.40 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=32.8
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCC
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~ 92 (515)
...||||||+|.||++||..+++.|.+|+|||+...
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~ 84 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFP 84 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCC
Confidence 357999999999999999999999999999998754
No 254
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.96 E-value=3.4e-05 Score=81.30 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=30.9
Q ss_pred CeEEEECCcHHHHHHHHhccCCCCeEEEEcCCC
Q 010217 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (515)
Q Consensus 59 ~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~ 91 (515)
+||+|||||+||+.+|..+++.|.+|+|+++..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence 589999999999999999999999999999864
No 255
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.93 E-value=8e-05 Score=79.06 Aligned_cols=94 Identities=19% Similarity=0.264 Sum_probs=71.7
Q ss_pred cceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecc--ccc--------cc----cccHHHHHHHHHHh
Q 010217 223 ILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAA--DHI--------LN----MFDKRITAFAEEKF 288 (515)
Q Consensus 223 ~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~--~~~--------l~----~~~~~~~~~~~~~l 288 (515)
...|+|||||+.|+.+|..+.+. |.+|+++... ..+ ++ ....++.+.+.+.+
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~--------------G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 276 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARK--------------GIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHV 276 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC--------------CCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHH
Confidence 35899999999999999999885 6788888643 111 01 12356778888999
Q ss_pred hcCCeEEEcCcEEEEEeCC--eEEEEecCCCceEEEecCeEEEccCC
Q 010217 289 SRDGIDVKLGSMVVKVTDK--EIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 289 ~~~gV~v~~~~~v~~i~~~--~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
++.|++++.++++..+..+ ...+. +.+|+. +.+|.||+|+|.
T Consensus 277 ~~~gv~i~~~~~V~~I~~~~~~~~V~-~~~g~~--i~a~~vViAtG~ 320 (517)
T PRK15317 277 KEYDVDIMNLQRASKLEPAAGLIEVE-LANGAV--LKAKTVILATGA 320 (517)
T ss_pred HHCCCEEEcCCEEEEEEecCCeEEEE-ECCCCE--EEcCEEEECCCC
Confidence 9999999999999999753 33333 355654 899999999995
No 256
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.91 E-value=5.3e-05 Score=69.78 Aligned_cols=96 Identities=25% Similarity=0.389 Sum_probs=61.1
Q ss_pred EEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcE-EEEEeccccccc--------------c----------------
Q 010217 227 VIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVK-ITLLEAADHILN--------------M---------------- 275 (515)
Q Consensus 227 vVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~-Vtlv~~~~~~l~--------------~---------------- 275 (515)
+|||+|+.|+-+|..|.+. +.+ |+|+++.+.+.. .
T Consensus 1 ~IIGaG~aGl~~a~~l~~~--------------g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLER--------------GIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSF 66 (203)
T ss_dssp EEE--SHHHHHHHHHHHHT--------------T---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCH
T ss_pred CEECcCHHHHHHHHHHHhC--------------CCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCccccccc
Confidence 6999999999999999886 456 888877643210 0
Q ss_pred -------------ccHHHHHHHHHHhhcCCeEEEcCcEEEEEeC--CeEEEEecCCCceEEEecCeEEEccCCCCccch
Q 010217 276 -------------FDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAII 339 (515)
Q Consensus 276 -------------~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~ 339 (515)
..+++.++++...++.+++++++++|+++.. ++..+. +.+++ ++.||.||+|+|....|..
T Consensus 67 ~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~-~~~~~--~~~a~~VVlAtG~~~~p~~ 142 (203)
T PF13738_consen 67 DDSPEWRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVT-TRDGR--TIRADRVVLATGHYSHPRI 142 (203)
T ss_dssp HHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEE-ETTS---EEEEEEEEE---SSCSB--
T ss_pred ccCCCCCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEE-EEecc--eeeeeeEEEeeeccCCCCc
Confidence 0123557778888899999999999999974 343333 35664 4889999999996556655
No 257
>PRK06175 L-aspartate oxidase; Provisional
Probab=97.91 E-value=5.9e-05 Score=78.09 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=31.5
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCc
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFA 94 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~ 94 (515)
..||||||+|.||++||..+. .|.+|+|||+.+..+
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~g 39 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNE 39 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCC
Confidence 479999999999999999985 799999999976543
No 258
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.91 E-value=5.4e-05 Score=81.38 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=30.9
Q ss_pred eEEEECCcHHHHHHHHhccCCCCeEEEEcCCCC
Q 010217 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (515)
Q Consensus 60 ~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~ 92 (515)
||||||+|.||++||..+++.|.+|+|||+.+.
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~ 33 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYP 33 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence 699999999999999999999999999998754
No 259
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.90 E-value=5.3e-05 Score=75.87 Aligned_cols=103 Identities=20% Similarity=0.343 Sum_probs=78.9
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEEE
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~i 137 (515)
..+||++|+|..|+.+|..|...+.+||+|++.+... +. +-..++...+..++++.++++ +..+.+.++
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~-----~~-----lf~~~i~~~~~~y~e~kgVk~-~~~t~~s~l 281 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLL-----PR-----LFGPSIGQFYEDYYENKGVKF-YLGTVVSSL 281 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccch-----hh-----hhhHHHHHHHHHHHHhcCeEE-EEecceeec
Confidence 6789999999999999999999999999999886421 11 111255666788999999887 456777777
Q ss_pred ecCC--C--EEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCCCC
Q 010217 138 DAEN--K--KVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTP 181 (515)
Q Consensus 138 d~~~--~--~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ip 181 (515)
+.+. + .|.+.++. ++.+|-||+.+|++|++....
T Consensus 282 ~~~~~Gev~~V~l~dg~----------~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 282 EGNSDGEVSEVKLKDGK----------TLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred ccCCCCcEEEEEeccCC----------EeccCeEEEeecccccccccc
Confidence 6544 3 34445443 899999999999999887665
No 260
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.90 E-value=5.4e-05 Score=79.71 Aligned_cols=35 Identities=34% Similarity=0.332 Sum_probs=31.2
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCC
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYF 93 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~ 93 (515)
..||||||+|.|||+||..++..|. |+|||+.+..
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~ 36 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVT 36 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCC
Confidence 3589999999999999999999887 9999988543
No 261
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.90 E-value=3.7e-05 Score=79.90 Aligned_cols=32 Identities=25% Similarity=0.380 Sum_probs=30.0
Q ss_pred CeEEEECCcHHHHHHHHhccC----CCCeEEEEcCC
Q 010217 59 KKVVVLGTGWAGTSFLKNLNN----PSYDVQVISPR 90 (515)
Q Consensus 59 ~~VvIIGgG~AGlsaA~~L~~----~g~~V~vie~~ 90 (515)
+||+||||||+|+++|..|++ .|++|+|||++
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~ 36 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAV 36 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCC
Confidence 489999999999999999998 79999999984
No 262
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.90 E-value=4.5e-05 Score=82.54 Aligned_cols=37 Identities=24% Similarity=0.270 Sum_probs=33.4
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCC
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYF 93 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~ 93 (515)
...||||||+|.||++||..++..|.+|+|||+....
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~ 43 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFG 43 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence 3579999999999999999999999999999987543
No 263
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.89 E-value=0.00012 Score=77.27 Aligned_cols=138 Identities=18% Similarity=0.307 Sum_probs=85.3
Q ss_pred ceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccccc----------------------------
Q 010217 224 LHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM---------------------------- 275 (515)
Q Consensus 224 ~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~---------------------------- 275 (515)
|+|+|||+|++|+-.|..|.+. |.+++++++.+.+...
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~--------------g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~ 67 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEE--------------GLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMA 67 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHT--------------T-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSC
T ss_pred CEEEEECccHHHHHHHHHHHHC--------------CCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhc
Confidence 5999999999999999999874 7899999887754210
Q ss_pred ---c-----------cHHHHHHHHHHhhcCCe--EEEcCcEEEEEeC--C-----eEEEEecCCCceEEEecCeEEEccC
Q 010217 276 ---F-----------DKRITAFAEEKFSRDGI--DVKLGSMVVKVTD--K-----EIFTKVRGNGETSSMPYGMVVWSTG 332 (515)
Q Consensus 276 ---~-----------~~~~~~~~~~~l~~~gV--~v~~~~~v~~i~~--~-----~v~~~~~~~G~~~~i~~D~vi~a~G 332 (515)
+ ..++.++++...++.++ .+.++++|.+++. + .-.+....+|+..+-.+|.||+|+|
T Consensus 68 fsdfp~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG 147 (531)
T PF00743_consen 68 FSDFPFPEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATG 147 (531)
T ss_dssp CTTS-HCCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-
T ss_pred CCCcCCCCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCC
Confidence 1 14577888888887776 5889999999963 1 2233333567665677999999999
Q ss_pred CCCccchHHHHHHhCCC-CCCceeeCCCcccc---CCCCEEEeccccc
Q 010217 333 IAPHAIIKDFMKQVGQT-NRRALATDEWLRVE---GSDSIYALGDCAT 376 (515)
Q Consensus 333 ~~~~p~~~~l~~~~~~~-~~g~i~vd~~l~t~---~~~~IyA~GD~~~ 376 (515)
.-..|++... .--|++ -.|.|.=-..++.. .-..|-.+|-..+
T Consensus 148 ~~~~P~~P~~-~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~S 194 (531)
T PF00743_consen 148 HFSKPNIPEP-SFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNS 194 (531)
T ss_dssp SSSCESB------CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHH
T ss_pred CcCCCCCChh-hhhhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHh
Confidence 8777776420 011231 23544433333321 1246888886544
No 264
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.89 E-value=7.2e-05 Score=81.27 Aligned_cols=36 Identities=22% Similarity=0.225 Sum_probs=32.6
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCC
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~ 92 (515)
...||||||||.|||+||..++..|.+|+|+|+.+.
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~ 39 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPA 39 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 357999999999999999999999999999997654
No 265
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.89 E-value=0.00036 Score=75.43 Aligned_cols=55 Identities=9% Similarity=0.077 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhcCCeEEEcCcEEEEEe--CC-eE---EEEecCCCceEEEecCeEEEccC
Q 010217 278 KRITAFAEEKFSRDGIDVKLGSMVVKVT--DK-EI---FTKVRGNGETSSMPYGMVVWSTG 332 (515)
Q Consensus 278 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~~-~v---~~~~~~~G~~~~i~~D~vi~a~G 332 (515)
..+...+.+.+++.||+++.++.++++. ++ .+ ......+|+...+.++.||+|||
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 226 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATG 226 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCC
Confidence 4566677777788999999999999964 23 33 33344578777899999999996
No 266
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.87 E-value=9.4e-05 Score=78.80 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=34.1
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCC
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYF 93 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~ 93 (515)
....||||||+|.||++||..+++.|.+|+|+|+....
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~ 51 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALD 51 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCC
Confidence 34689999999999999999999999999999987654
No 267
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.87 E-value=6.8e-05 Score=80.57 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=31.2
Q ss_pred CCeEEEECCcHHHHHHHHhccCC--CCeEEEEcCCCCC
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNP--SYDVQVISPRNYF 93 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~--g~~V~vie~~~~~ 93 (515)
..||||||||.||++||..+++. |.+|+|+|+....
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~ 40 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPI 40 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCC
Confidence 36899999999999999999865 5899999987543
No 268
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.87 E-value=3.1e-05 Score=87.02 Aligned_cols=89 Identities=19% Similarity=0.134 Sum_probs=68.6
Q ss_pred ccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccc---------cccHHHHHHHHHHhhcCC
Q 010217 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN---------MFDKRITAFAEEKFSRDG 292 (515)
Q Consensus 222 ~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~---------~~~~~~~~~~~~~l~~~g 292 (515)
.+++|+|||+||.|+.+|..|.+. |.+|+++++.+.+.. .++.++.+...+.+++.|
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~--------------G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~G 370 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVE--------------GFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLG 370 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC--------------CCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhc
Confidence 589999999999999999999985 789999999876532 245667777778889999
Q ss_pred eEEEcCcEEEEEeCCeEEEEecCCCceEEEecCeEEEccCC
Q 010217 293 IDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 293 V~v~~~~~v~~i~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
|+|++++.+- ..+++. +.. ...+|.||+|||.
T Consensus 371 v~f~~n~~vG----~dit~~---~l~--~~~yDAV~LAtGA 402 (944)
T PRK12779 371 GRFVKNFVVG----KTATLE---DLK--AAGFWKIFVGTGA 402 (944)
T ss_pred CeEEEeEEec----cEEeHH---Hhc--cccCCEEEEeCCC
Confidence 9999987652 222222 222 2569999999995
No 269
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.86 E-value=0.00012 Score=77.55 Aligned_cols=95 Identities=20% Similarity=0.281 Sum_probs=71.4
Q ss_pred ccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecc--cccc-----------c-cccHHHHHHHHHH
Q 010217 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAA--DHIL-----------N-MFDKRITAFAEEK 287 (515)
Q Consensus 222 ~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~--~~~l-----------~-~~~~~~~~~~~~~ 287 (515)
...+|+|||||+.|+.+|..+++. |.+|++++.. ..+. + ...+++.+.+.+.
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~--------------G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 276 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARK--------------GLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEH 276 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC--------------CCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHH
Confidence 346999999999999999999985 6889988632 1111 0 1235677788888
Q ss_pred hhcCCeEEEcCcEEEEEeCC--eEEEEecCCCceEEEecCeEEEccCC
Q 010217 288 FSRDGIDVKLGSMVVKVTDK--EIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 288 l~~~gV~v~~~~~v~~i~~~--~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
+++.||+++.+++|..+..+ ...+. ..+|+. +.+|.+|+|+|.
T Consensus 277 l~~~gv~i~~~~~V~~I~~~~~~~~v~-~~~g~~--i~~d~lIlAtGa 321 (515)
T TIGR03140 277 IKQYPIDLMENQRAKKIETEDGLIVVT-LESGEV--LKAKSVIVATGA 321 (515)
T ss_pred HHHhCCeEEcCCEEEEEEecCCeEEEE-ECCCCE--EEeCEEEECCCC
Confidence 88999999999999998643 23333 345664 999999999995
No 270
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.85 E-value=7.3e-05 Score=79.83 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=31.7
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCC
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~ 92 (515)
...||||||+|.||++||..+ ..|.+|+|+|+.+.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~ 40 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLF 40 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCC
Confidence 357999999999999999999 89999999999753
No 271
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.84 E-value=1.2e-05 Score=84.00 Aligned_cols=39 Identities=23% Similarity=0.347 Sum_probs=35.7
Q ss_pred CeEEEECCcHHHHHHHHhccCCC--CeEEEEcCCCCCccCC
Q 010217 59 KKVVVLGTGWAGTSFLKNLNNPS--YDVQVISPRNYFAFTP 97 (515)
Q Consensus 59 ~~VvIIGgG~AGlsaA~~L~~~g--~~V~vie~~~~~~~~~ 97 (515)
++|+|||||+|||+||+.|++.| ++|+|+|+++.+|+..
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~ 41 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKI 41 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceE
Confidence 57999999999999999999877 8999999999998753
No 272
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.83 E-value=0.00047 Score=74.14 Aligned_cols=38 Identities=18% Similarity=0.155 Sum_probs=33.9
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCcc
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAF 95 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~ 95 (515)
..||||||+|.|||+||..++..|.+|+|+|+....++
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g 44 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRS 44 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 46999999999999999999999999999999865443
No 273
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.82 E-value=5e-05 Score=76.56 Aligned_cols=98 Identities=15% Similarity=0.154 Sum_probs=65.9
Q ss_pred ccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccccc---------ccHHHHHHHHHHhhcCC
Q 010217 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM---------FDKRITAFAEEKFSRDG 292 (515)
Q Consensus 222 ~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~---------~~~~~~~~~~~~l~~~g 292 (515)
.+++|+|||+|+.|+++|..|.+. +.+|+++++.+.+... ++.+......+.+.+.|
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~--------------g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACL--------------GYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAG 82 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC--------------CCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCC
Confidence 567999999999999999999874 6899999998765421 22233333445566779
Q ss_pred eEEEcCcEEEEEeC-----CeEEEEecCCCceEEEecCeEEEccCC
Q 010217 293 IDVKLGSMVVKVTD-----KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 293 V~v~~~~~v~~i~~-----~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
|+++.++.+..+.. +..........+...+.+|.||+|||.
T Consensus 83 i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs 128 (352)
T PRK12770 83 VVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGT 128 (352)
T ss_pred eEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCC
Confidence 99999988866532 111111111111113789999999995
No 274
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.82 E-value=0.0003 Score=74.04 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=34.3
Q ss_pred CeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCcc
Q 010217 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAF 95 (515)
Q Consensus 59 ~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~ 95 (515)
+||+|||+||+|+.+|+.|++.|++|+|||+....++
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence 5899999999999999999999999999999987764
No 275
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.81 E-value=5.4e-05 Score=77.88 Aligned_cols=88 Identities=24% Similarity=0.301 Sum_probs=68.7
Q ss_pred ccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccc---------cccHHHHHHHHHHhhcCC
Q 010217 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN---------MFDKRITAFAEEKFSRDG 292 (515)
Q Consensus 222 ~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~---------~~~~~~~~~~~~~l~~~g 292 (515)
.+++|+|||+||.|+.+|..|++. +..|+++++.+.... .++.++.+...+.|++.|
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~--------------G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~G 187 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRA--------------GHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSG 187 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhC--------------CCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcC
Confidence 568999999999999999999985 799999999887632 246788888899999999
Q ss_pred eEEEcCcEEEEEeCCeEEEEecCCCceEEEecCeEEEccCC
Q 010217 293 IDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 293 V~v~~~~~v~~i~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
|+|++++++-. .+++..+ .-++|.|++++|.
T Consensus 188 v~~~~~~~vG~----~it~~~L------~~e~Dav~l~~G~ 218 (457)
T COG0493 188 VEFKLNVRVGR----DITLEEL------LKEYDAVFLATGA 218 (457)
T ss_pred eEEEEcceECC----cCCHHHH------HHhhCEEEEeccc
Confidence 99999988731 2222211 1345999999994
No 276
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.81 E-value=8.8e-05 Score=80.05 Aligned_cols=110 Identities=15% Similarity=0.167 Sum_probs=72.1
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHH-HhhcCceEEEEEeEEEE
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNI-VRKKNVDICFWEAECFK 136 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~i~v~~~~~~v~~ 136 (515)
+++|+|||||+.|+.+|..|...|.+|+||++.+.+.. . . ..++...+... +++.|+++ +.+..|..
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~-----~-----~-d~eis~~l~~~ll~~~GV~I-~~~~~V~~ 379 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP-----L-----L-DADVAKYFERVFLKSKPVRV-HLNTLIEY 379 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc-----c-----C-CHHHHHHHHHHHhhcCCcEE-EcCCEEEE
Confidence 57999999999999999999999999999998865321 1 1 11233334443 35678887 45778888
Q ss_pred EecCCC--EEEEee--CCccCCCC-----CceEEeecCEEEEccCCCcCCCC
Q 010217 137 IDAENK--KVYCRS--SQNTNLNG-----KEEFCMDYDYLVIAMGARANTFN 179 (515)
Q Consensus 137 id~~~~--~v~~~~--~~~~~~~~-----~~~~~~~~d~lviAtG~~~~~~~ 179 (515)
|+..+. .+.+.. .......+ .+..++.+|.|++|+|.+|+...
T Consensus 380 I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~ 431 (659)
T PTZ00153 380 VRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNN 431 (659)
T ss_pred EEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCcc
Confidence 876542 244321 10000000 01237999999999999988653
No 277
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.81 E-value=4.6e-05 Score=70.02 Aligned_cols=139 Identities=26% Similarity=0.470 Sum_probs=94.7
Q ss_pred eEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccc---cccc-----------HHHH--H--HHHH
Q 010217 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL---NMFD-----------KRIT--A--FAEE 286 (515)
Q Consensus 225 ~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l---~~~~-----------~~~~--~--~~~~ 286 (515)
+|+|||||+.|+.+|..|.+. +.+|+++++.+... ..+. .... . .+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~--------------~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP--------------GAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVD 66 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT--------------TSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcC--------------CCeEEEEeccccccccccccccccccccccccccccccccccccc
Confidence 589999999999999999963 78999997765321 0000 0011 1 3344
Q ss_pred HhhcCCeEEEcCcEEEEEeCCeE-------EEEecCCCceEEEecCeEEEccCCCCc-cchH---------------HHH
Q 010217 287 KFSRDGIDVKLGSMVVKVTDKEI-------FTKVRGNGETSSMPYGMVVWSTGIAPH-AIIK---------------DFM 343 (515)
Q Consensus 287 ~l~~~gV~v~~~~~v~~i~~~~v-------~~~~~~~G~~~~i~~D~vi~a~G~~~~-p~~~---------------~l~ 343 (515)
.+...+++++.++++.+++...- .......++..++.+|.||+|+|..+. |.+. .+.
T Consensus 67 ~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~ 146 (201)
T PF07992_consen 67 QLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFL 146 (201)
T ss_dssp HHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHH
T ss_pred ccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCcccccccccccccccc
Confidence 45678999999999999974321 222222344557999999999995422 1111 111
Q ss_pred ------------------HHhCC--CCCCceeeCCCccccCCCCEEEeccccccC
Q 010217 344 ------------------KQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVN 378 (515)
Q Consensus 344 ------------------~~~~~--~~~g~i~vd~~l~t~~~~~IyA~GD~~~~~ 378 (515)
+.+++ +++|++.||+++|| +.|+|||+|||+.++
T Consensus 147 ~~~~~~~~v~VvG~~~l~~~~~~~~~~~g~i~vd~~~~t-~~~~Iya~GD~a~~~ 200 (201)
T PF07992_consen 147 ELLESPKRVAVVGTEFLAEKLGVELDENGFIKVDENLQT-SVPGIYAAGDCAGIY 200 (201)
T ss_dssp THSSTTSEEEEESTTTSTHHTTSTBTTTSSBEEBTTSBB-SSTTEEE-GGGBEES
T ss_pred ccccccccccccccccccccccccccccccccccccccc-ccccccccccccccC
Confidence 44455 57899999999999 899999999999864
No 278
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.81 E-value=1.7e-05 Score=83.38 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=37.8
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCC
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~ 97 (515)
+.+||||||||++||+||..|++.|++|+|+|++...|+..
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a 42 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRA 42 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcce
Confidence 35899999999999999999999999999999998888754
No 279
>PRK08275 putative oxidoreductase; Provisional
Probab=97.80 E-value=0.0001 Score=78.80 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=31.9
Q ss_pred CCCeEEEECCcHHHHHHHHhccCC--CCeEEEEcCCCC
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNP--SYDVQVISPRNY 92 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~--g~~V~vie~~~~ 92 (515)
...||||||+|.||++||..+++. |.+|+|+|+.+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 457999999999999999999865 789999998864
No 280
>PRK06847 hypothetical protein; Provisional
Probab=97.80 E-value=0.00024 Score=72.19 Aligned_cols=57 Identities=21% Similarity=0.394 Sum_probs=41.7
Q ss_pred HHHHHHHHHhhcCCeEEEcCcEEEEEeC--CeEEEEecCCCceEEEecCeEEEccCCCCccchH
Q 010217 279 RITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIK 340 (515)
Q Consensus 279 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~ 340 (515)
.+.+.+.+.+.+.|++++.++++++++. +.+.+. ..+|++ +.+|.||.|.|. .+.+.
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~-~~~g~~--~~ad~vI~AdG~--~s~~r 166 (375)
T PRK06847 108 ALARILADAARAAGADVRLGTTVTAIEQDDDGVTVT-FSDGTT--GRYDLVVGADGL--YSKVR 166 (375)
T ss_pred HHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEE-EcCCCE--EEcCEEEECcCC--Ccchh
Confidence 4456666777778999999999999873 344444 356764 899999999994 44443
No 281
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.80 E-value=3.9e-05 Score=80.16 Aligned_cols=89 Identities=24% Similarity=0.333 Sum_probs=67.6
Q ss_pred hccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccc-------cc--ccHHHHHHHHHHhhcC
Q 010217 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-------NM--FDKRITAFAEEKFSRD 291 (515)
Q Consensus 221 ~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l-------~~--~~~~~~~~~~~~l~~~ 291 (515)
..+++|+|||||+.|+++|..|.+. +.+|+++++.+.+. +. ++.++.....+.+++.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~--------------g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~ 203 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARK--------------GYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKL 203 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC--------------CCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHc
Confidence 3678999999999999999999874 68999999887652 11 3566777777888899
Q ss_pred CeEEEcCcEEEEEeCCeEEEEecCCCceEEEecCeEEEccCC
Q 010217 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 292 gV~v~~~~~v~~i~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
||++++++.+.. .+.+ .+.. +.+|.||+|||.
T Consensus 204 gv~~~~~~~v~~----~v~~---~~~~---~~~d~vvlAtGa 235 (457)
T PRK11749 204 GVEIRTNTEVGR----DITL---DELR---AGYDAVFIGTGA 235 (457)
T ss_pred CCEEEeCCEECC----ccCH---HHHH---hhCCEEEEccCC
Confidence 999999987621 1111 1122 679999999995
No 282
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.80 E-value=0.00013 Score=78.74 Aligned_cols=35 Identities=17% Similarity=0.312 Sum_probs=31.9
Q ss_pred CCeEEEECCcHHHHHHHHhccCC--CCeEEEEcCCCC
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNP--SYDVQVISPRNY 92 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~--g~~V~vie~~~~ 92 (515)
..||||||||.||++||..+++. |.+|+|||+.+.
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence 46999999999999999999987 999999998754
No 283
>PLN02268 probable polyamine oxidase
Probab=97.80 E-value=1.8e-05 Score=82.32 Aligned_cols=39 Identities=26% Similarity=0.466 Sum_probs=36.7
Q ss_pred CeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCC
Q 010217 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (515)
Q Consensus 59 ~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~ 97 (515)
++|+|||||.|||+||+.|.+.|++|+|+|+++++|+..
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri 39 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRV 39 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCcee
Confidence 479999999999999999999999999999999999864
No 284
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.79 E-value=9.6e-05 Score=79.49 Aligned_cols=37 Identities=30% Similarity=0.350 Sum_probs=32.7
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCC---CeEEEEcCCCCC
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPS---YDVQVISPRNYF 93 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g---~~V~vie~~~~~ 93 (515)
...||||||||.|||+||..+++.| .+|+|+|+....
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~ 43 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPM 43 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCC
Confidence 3579999999999999999999887 899999987543
No 285
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.79 E-value=7.8e-05 Score=83.01 Aligned_cols=88 Identities=17% Similarity=0.241 Sum_probs=65.7
Q ss_pred hccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccc-------c--ccHHHHHHHHHHhhcC
Q 010217 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN-------M--FDKRITAFAEEKFSRD 291 (515)
Q Consensus 221 ~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~-------~--~~~~~~~~~~~~l~~~ 291 (515)
..+++|+|||||+.|+.+|..|++. |.+|+|+++.+.+.. . ++.+....-.+.+.+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~--------------G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~ 602 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARA--------------GHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAH 602 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHc--------------CCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHc
Confidence 3678999999999999999999985 689999998875422 1 2444555555777888
Q ss_pred CeEEEcCcEEEEEeCCeEEEEecCCCceEEEecCeEEEccCC
Q 010217 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 292 gV~v~~~~~v~~i~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
||++++++.+ .+ .+ .+.. ...+|.||+|||.
T Consensus 603 GVe~~~gt~V-di-----~l---e~L~--~~gYDaVILATGA 633 (1019)
T PRK09853 603 GVKFEFGCSP-DL-----TV---EQLK--NEGYDYVVVAIGA 633 (1019)
T ss_pred CCEEEeCcee-EE-----Eh---hhhe--eccCCEEEECcCC
Confidence 9999999876 22 11 1122 2569999999995
No 286
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.79 E-value=0.00016 Score=77.88 Aligned_cols=35 Identities=26% Similarity=0.291 Sum_probs=32.2
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCC
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~ 91 (515)
...||||||||.||++||..+++.|.+|+|||+..
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~ 45 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVF 45 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccC
Confidence 45799999999999999999999999999999874
No 287
>PRK07208 hypothetical protein; Provisional
Probab=97.79 E-value=1.9e-05 Score=83.12 Aligned_cols=41 Identities=29% Similarity=0.365 Sum_probs=37.8
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCC
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~ 97 (515)
+.++|+|||||++||+||+.|.+.|++|+|+|+++.+|+..
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~ 43 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGIS 43 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence 46799999999999999999999999999999999988853
No 288
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.78 E-value=6.1e-05 Score=78.40 Aligned_cols=88 Identities=22% Similarity=0.279 Sum_probs=66.2
Q ss_pred ccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccc-------c--cccHHHHHHHHHHhhcCC
Q 010217 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-------N--MFDKRITAFAEEKFSRDG 292 (515)
Q Consensus 222 ~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l-------~--~~~~~~~~~~~~~l~~~g 292 (515)
.+++|+|||+|+.|+.+|..|++. +.+|+++++.+.+. + .++.++.+...+.+++.|
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~--------------G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~g 197 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKA--------------GHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLG 197 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC--------------CCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCC
Confidence 568999999999999999999875 68999999876542 2 245667677777888999
Q ss_pred eEEEcCcEEEEEeCCeEEEEecCCCceEEEecCeEEEccCC
Q 010217 293 IDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 293 V~v~~~~~v~~i~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
|++++++.+. ..+.+ .+.. ..+|.||+|||.
T Consensus 198 v~~~~~~~v~----~~v~~---~~~~---~~yd~viiAtGa 228 (449)
T TIGR01316 198 VTFRMNFLVG----KTATL---EELF---SQYDAVFIGTGA 228 (449)
T ss_pred cEEEeCCccC----CcCCH---HHHH---hhCCEEEEeCCC
Confidence 9999998541 11221 1122 468999999995
No 289
>PLN02546 glutathione reductase
Probab=97.78 E-value=0.00014 Score=77.45 Aligned_cols=102 Identities=16% Similarity=0.211 Sum_probs=71.8
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEE
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~ 136 (515)
..++|+|||||+.|+.+|..|...|.+|+|+++.+.+. +. ...++...+.+.+++.||++. .+..+..
T Consensus 251 ~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il-----~~------~d~~~~~~l~~~L~~~GV~i~-~~~~v~~ 318 (558)
T PLN02546 251 KPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL-----RG------FDEEVRDFVAEQMSLRGIEFH-TEESPQA 318 (558)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc-----cc------cCHHHHHHHHHHHHHCCcEEE-eCCEEEE
Confidence 45799999999999999999999999999999875432 11 012333446677788898873 4677888
Q ss_pred EecC-CCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCC
Q 010217 137 IDAE-NKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (515)
Q Consensus 137 id~~-~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~ 178 (515)
+... +..+.+... + .....+|.||+|+|..|+..
T Consensus 319 i~~~~~g~v~v~~~------~--g~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 319 IIKSADGSLSLKTN------K--GTVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred EEEcCCCEEEEEEC------C--eEEEecCEEEEeeccccCCC
Confidence 8642 333444321 1 11345899999999998764
No 290
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.77 E-value=0.00011 Score=74.35 Aligned_cols=95 Identities=20% Similarity=0.290 Sum_probs=66.5
Q ss_pred CCeEEEECCcHHHHHHHHhccC----CC--CeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEE
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNN----PS--YDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWE 131 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~----~g--~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~ 131 (515)
.++|+|||+|++|+.+|..|+. .| .+|+|+. .+.+ ++.. ...+...+.+.+++.++++. .+
T Consensus 145 ~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~-~~~~-----l~~~------~~~~~~~~~~~l~~~gV~v~-~~ 211 (364)
T TIGR03169 145 TKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIA-GASL-----LPGF------PAKVRRLVLRLLARRGIEVH-EG 211 (364)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEe-CCcc-----cccC------CHHHHHHHHHHHHHCCCEEE-eC
Confidence 4699999999999999988873 34 5899994 3221 1111 11333456677888998873 46
Q ss_pred eEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCC
Q 010217 132 AECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANT 177 (515)
Q Consensus 132 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~ 177 (515)
.++..++.+ .+.+.++. ++.+|.+|+|+|..|+.
T Consensus 212 ~~v~~i~~~--~v~~~~g~----------~i~~D~vi~a~G~~p~~ 245 (364)
T TIGR03169 212 APVTRGPDG--ALILADGR----------TLPADAILWATGARAPP 245 (364)
T ss_pred CeeEEEcCC--eEEeCCCC----------EEecCEEEEccCCChhh
Confidence 678888644 56665432 79999999999998753
No 291
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.76 E-value=0.00028 Score=68.94 Aligned_cols=93 Identities=26% Similarity=0.438 Sum_probs=67.9
Q ss_pred eEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccc------------------------------
Q 010217 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN------------------------------ 274 (515)
Q Consensus 225 ~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~------------------------------ 274 (515)
.|+|||||++|+-+|..|++. +.+|+++++.+....
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~--------------g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 67 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADK--------------GLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGAR 67 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHC--------------CCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEE
Confidence 589999999999999999874 678888887753210
Q ss_pred -------------------cc-cHHHHHHHHHHhhcCCeEEEcCcEEEEEe--CCeEEEEecCCCceEEEecCeEEEccC
Q 010217 275 -------------------MF-DKRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTG 332 (515)
Q Consensus 275 -------------------~~-~~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~~~v~~~~~~~G~~~~i~~D~vi~a~G 332 (515)
.+ ...+.+.+.+.+.+.|++++.+++++++. ++.+.+....++. ++.+|.||.|+|
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~a~~vv~a~G 145 (295)
T TIGR02032 68 FFSPNGDSVEIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEG--TVTAKIVIGADG 145 (295)
T ss_pred EEcCCCcEEEeccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccE--EEEeCEEEECCC
Confidence 01 12455667777788899999999999875 3455444322233 489999999999
Q ss_pred C
Q 010217 333 I 333 (515)
Q Consensus 333 ~ 333 (515)
.
T Consensus 146 ~ 146 (295)
T TIGR02032 146 S 146 (295)
T ss_pred c
Confidence 4
No 292
>PLN02815 L-aspartate oxidase
Probab=97.75 E-value=0.00016 Score=77.41 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=33.5
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCcc
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAF 95 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~ 95 (515)
....||||||+|.|||+||..+++.| +|+|+|+.+..++
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg 65 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES 65 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence 34579999999999999999999999 9999998765433
No 293
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.74 E-value=2.3e-05 Score=86.79 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=31.4
Q ss_pred CeEEEECCcHHHHHHHHhccCC--CCeEEEEcCCCC
Q 010217 59 KKVVVLGTGWAGTSFLKNLNNP--SYDVQVISPRNY 92 (515)
Q Consensus 59 ~~VvIIGgG~AGlsaA~~L~~~--g~~V~vie~~~~ 92 (515)
++|+||||||||++||..|++. |++|+|+|+.+.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 4899999999999999999976 899999999875
No 294
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.74 E-value=0.00018 Score=77.35 Aligned_cols=35 Identities=29% Similarity=0.352 Sum_probs=32.2
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCC
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~ 91 (515)
...||||||+|.|||+||..+++.|.+|+|||+..
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~ 45 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVF 45 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence 45799999999999999999999999999999864
No 295
>PRK07233 hypothetical protein; Provisional
Probab=97.72 E-value=2.4e-05 Score=81.20 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=35.7
Q ss_pred eEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCC
Q 010217 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (515)
Q Consensus 60 ~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~ 97 (515)
+|||||||+|||+||+.|++.|++|+|+|+++.+|+..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~ 38 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLA 38 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCce
Confidence 69999999999999999999999999999999998853
No 296
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.72 E-value=2.6e-05 Score=79.19 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=30.3
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCC
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPR 90 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~ 90 (515)
.+||+|||||.||+.||...++.|+++.|+--+
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~ 36 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN 36 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence 489999999999999999999999999998754
No 297
>PLN02576 protoporphyrinogen oxidase
Probab=97.71 E-value=3.6e-05 Score=81.48 Aligned_cols=42 Identities=24% Similarity=0.268 Sum_probs=37.9
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCC-CCeEEEEcCCCCCccCC
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNP-SYDVQVISPRNYFAFTP 97 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~-g~~V~vie~~~~~~~~~ 97 (515)
...++|+|||||++||+||++|.+. |++|+|+|+++.+|+..
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~ 52 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNI 52 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCce
Confidence 3456899999999999999999988 99999999999998863
No 298
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.70 E-value=2.9e-05 Score=81.35 Aligned_cols=40 Identities=20% Similarity=0.310 Sum_probs=36.7
Q ss_pred CCeEEEECCcHHHHHHHHhccCC----CCeEEEEcCCCCCccCC
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNP----SYDVQVISPRNYFAFTP 97 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~----g~~V~vie~~~~~~~~~ 97 (515)
+++|+|||||+|||+||+.|.+. |++|+|+|+++.+|+..
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~ 45 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKI 45 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceE
Confidence 47999999999999999999987 99999999999988763
No 299
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.70 E-value=0.00028 Score=76.51 Aligned_cols=36 Identities=19% Similarity=0.421 Sum_probs=32.6
Q ss_pred CCCeEEEECCcHHHHHHHHhccC-CCCeEEEEcCCCC
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNN-PSYDVQVISPRNY 92 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~-~g~~V~vie~~~~ 92 (515)
...+|+||||||+||++|..|++ .|.+|+|||+.+.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 46799999999999999999999 5999999998753
No 300
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.69 E-value=0.00016 Score=75.73 Aligned_cols=89 Identities=22% Similarity=0.316 Sum_probs=66.8
Q ss_pred ccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccc-------c--cccHHHHHHHHHHhhcCC
Q 010217 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-------N--MFDKRITAFAEEKFSRDG 292 (515)
Q Consensus 222 ~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l-------~--~~~~~~~~~~~~~l~~~g 292 (515)
.+++|+|||+|+.|+.+|..|++. +.+|+++++.+.+. + .++.++.+...+.+++.|
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~--------------G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~G 205 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARA--------------GVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMG 205 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc--------------CCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCC
Confidence 678999999999999999999875 68999999887642 2 235666666778889999
Q ss_pred eEEEcCcEEEEEeCCeEEEEecCCCceEEEecCeEEEccCCC
Q 010217 293 IDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIA 334 (515)
Q Consensus 293 V~v~~~~~v~~i~~~~v~~~~~~~G~~~~i~~D~vi~a~G~~ 334 (515)
|+++.++.+.. .+.+ . +. ...+|.||+|+|..
T Consensus 206 v~~~~~~~v~~----~~~~---~-~~--~~~~D~vilAtGa~ 237 (467)
T TIGR01318 206 IEFHLNCEVGR----DISL---D-DL--LEDYDAVFLGVGTY 237 (467)
T ss_pred CEEECCCEeCC----ccCH---H-HH--HhcCCEEEEEeCCC
Confidence 99999987632 1111 1 11 14699999999953
No 301
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.69 E-value=5.1e-05 Score=76.14 Aligned_cols=92 Identities=15% Similarity=0.278 Sum_probs=60.7
Q ss_pred HHHHHHHHHhhcC-CeEEEcCcEEEEEeC--Ce---EEEEecCCCceEEEecCeEEEccCCCCccchHHHHHHhCC---C
Q 010217 279 RITAFAEEKFSRD-GIDVKLGSMVVKVTD--KE---IFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ---T 349 (515)
Q Consensus 279 ~~~~~~~~~l~~~-gV~v~~~~~v~~i~~--~~---v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~~~---~ 349 (515)
.+.+.+.+.+.+. |++++++++|+.|+. ++ +.+.+..+|+..++.+++|++..|- . .+ .|++..|+ .
T Consensus 182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG--~-aL-~LLqksgi~e~~ 257 (488)
T PF06039_consen 182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGG--G-AL-PLLQKSGIPEGK 257 (488)
T ss_pred HHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCch--H-hH-HHHHHcCChhhc
Confidence 4445555556655 999999999999974 22 5566666787778999999999983 2 22 56788887 2
Q ss_pred CCCceee-CCCccccC-------CCCEEEeccc
Q 010217 350 NRRALAT-DEWLRVEG-------SDSIYALGDC 374 (515)
Q Consensus 350 ~~g~i~v-d~~l~t~~-------~~~IyA~GD~ 374 (515)
.-|++.| -.++++.+ .--||..-.+
T Consensus 258 gyggfPVsG~fl~~~n~~vv~~H~aKVYgka~v 290 (488)
T PF06039_consen 258 GYGGFPVSGQFLRCKNPEVVAQHNAKVYGKASV 290 (488)
T ss_pred ccCCCcccceEEecCCHHHHHHhcceeeeeCCC
Confidence 2344444 45666632 1236765554
No 302
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.66 E-value=0.00026 Score=76.20 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=30.7
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCC
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~ 92 (515)
...||||||||.||++||..++.. .+|+|+|+...
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~ 38 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYP 38 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCC
Confidence 357999999999999999999865 89999998743
No 303
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.65 E-value=0.00027 Score=75.85 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=31.2
Q ss_pred CCeEEEECCcHHHHHHHHhccCC--CCeEEEEcCCCCC
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNP--SYDVQVISPRNYF 93 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~--g~~V~vie~~~~~ 93 (515)
..||||||||.||++||..+++. |.+|+|+|+....
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~ 40 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPM 40 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCC
Confidence 46899999999999999999865 6899999987543
No 304
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.65 E-value=0.00022 Score=76.88 Aligned_cols=31 Identities=35% Similarity=0.517 Sum_probs=29.6
Q ss_pred EEEECCcHHHHHHHHhccCCCCeEEEEcCCC
Q 010217 61 VVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (515)
Q Consensus 61 VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~ 91 (515)
|||||+|.|||+||..+++.|.+|+|+|+.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence 7999999999999999999999999999886
No 305
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.64 E-value=0.00016 Score=74.18 Aligned_cols=89 Identities=16% Similarity=0.225 Sum_probs=60.0
Q ss_pred ccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccccc-------c---HHHHHHHHHHhhcC
Q 010217 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMF-------D---KRITAFAEEKFSRD 291 (515)
Q Consensus 222 ~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~~-------~---~~~~~~~~~~l~~~ 291 (515)
++++|+|||+||.|+.+|..|... .+.+|+++++.+.+...+ . ..+.+.+...+...
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~-------------~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~ 104 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKH-------------ERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSP 104 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHh-------------cCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhC
Confidence 457999999999999999987643 268999999998764311 1 23445555556678
Q ss_pred CeEEEcCcEEEEEeCCeEEEEecCCCceEEEecCeEEEccCC
Q 010217 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 292 gV~v~~~~~v~~i~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
+++++.+..+-. .++...+ .-.+|.||+|+|.
T Consensus 105 ~v~f~gnv~VG~----Dvt~eeL------~~~YDAVIlAtGA 136 (506)
T PTZ00188 105 NYRFFGNVHVGV----DLKMEEL------RNHYNCVIFCCGA 136 (506)
T ss_pred CeEEEeeeEecC----ccCHHHH------HhcCCEEEEEcCC
Confidence 888886544421 1111111 1358999999994
No 306
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.64 E-value=0.00011 Score=76.52 Aligned_cols=90 Identities=20% Similarity=0.242 Sum_probs=63.7
Q ss_pred ccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccc--------cc--cHHHHHHHHHHhhcC
Q 010217 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN--------MF--DKRITAFAEEKFSRD 291 (515)
Q Consensus 222 ~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~--------~~--~~~~~~~~~~~l~~~ 291 (515)
.+++|+|||+||.|+.+|..|.+.. .+.+|+|+++.+.+.. .. ...+...+.+.+...
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~------------~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~ 92 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAH------------DGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDD 92 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhC------------CCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHC
Confidence 4579999999999999999998521 3789999999987642 11 123344556667788
Q ss_pred CeEEEcCcEEEEEeCCeEEEEecCCCceEEEecCeEEEccCC
Q 010217 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 292 gV~v~~~~~v~~i~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
+|+++.+..+- ..+.+.. -. ..+|.||+|+|.
T Consensus 93 ~v~~~~nv~vg----~dvtl~~---L~---~~yDaVIlAtGa 124 (491)
T PLN02852 93 RVSFFGNVTLG----RDVSLSE---LR---DLYHVVVLAYGA 124 (491)
T ss_pred CeEEEcCEEEC----ccccHHH---Hh---hhCCEEEEecCC
Confidence 99999887662 2222221 11 469999999995
No 307
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.63 E-value=0.00016 Score=80.41 Aligned_cols=90 Identities=23% Similarity=0.361 Sum_probs=66.5
Q ss_pred hccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccc-------c--cccHHHHHHHHHHhhcC
Q 010217 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-------N--MFDKRITAFAEEKFSRD 291 (515)
Q Consensus 221 ~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l-------~--~~~~~~~~~~~~~l~~~ 291 (515)
..+++|+|||+|+.|+.+|..|++. |.+|+++++.+.+. | .++.++.+...+.+++.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~--------------G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~ 494 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKR--------------GYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKL 494 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC--------------CCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHC
Confidence 4678999999999999999999985 68999999865432 1 13456666666778889
Q ss_pred CeEEEcCcEEEEEeCCeEEEEecCCCceEEEecCeEEEccCC
Q 010217 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 292 gV~v~~~~~v~~i~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
||++++++.+. ..+.+. +.. ...+|.||+|+|.
T Consensus 495 gv~~~~~~~v~----~~v~~~---~l~--~~~ydavvlAtGa 527 (752)
T PRK12778 495 GVKFETDVIVG----KTITIE---ELE--EEGFKGIFIASGA 527 (752)
T ss_pred CCEEECCCEEC----CcCCHH---HHh--hcCCCEEEEeCCC
Confidence 99999997652 222221 122 2669999999995
No 308
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.63 E-value=0.00022 Score=74.87 Aligned_cols=88 Identities=24% Similarity=0.335 Sum_probs=66.2
Q ss_pred ccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccc-------c--cccHHHHHHHHHHhhcCC
Q 010217 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-------N--MFDKRITAFAEEKFSRDG 292 (515)
Q Consensus 222 ~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l-------~--~~~~~~~~~~~~~l~~~g 292 (515)
.+++|+|||+|++|+.+|..|.+. +.+|+++++.+++. + .++.++.....+.+++.|
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~--------------g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~G 207 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRA--------------GHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEG 207 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHc--------------CCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCC
Confidence 567999999999999999999874 68999999887652 2 135566666667888899
Q ss_pred eEEEcCcEEEEEeCCeEEEEecCCCceEEEecCeEEEccCC
Q 010217 293 IDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 293 V~v~~~~~v~~i~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
|++++++.+.. .+ . .+.....+|.||+|+|.
T Consensus 208 v~~~~~~~v~~----~~---~---~~~~~~~~d~VilAtGa 238 (485)
T TIGR01317 208 IDFVTNTEIGV----DI---S---ADELKEQFDAVVLAGGA 238 (485)
T ss_pred CEEECCCEeCC----cc---C---HHHHHhhCCEEEEccCC
Confidence 99999988741 01 0 11112579999999995
No 309
>PRK07236 hypothetical protein; Provisional
Probab=97.62 E-value=0.00038 Score=71.16 Aligned_cols=99 Identities=15% Similarity=0.217 Sum_probs=67.2
Q ss_pred ceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccccc------ccHHHHHHHHH-----------
Q 010217 224 LHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM------FDKRITAFAEE----------- 286 (515)
Q Consensus 224 ~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~------~~~~~~~~~~~----------- 286 (515)
.+|+|||||++|+.+|..|.+. |.+|+|+++.+..... +.+...+.+.+
T Consensus 7 ~~ViIVGaG~aGl~~A~~L~~~--------------G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~ 72 (386)
T PRK07236 7 PRAVVIGGSLGGLFAALLLRRA--------------GWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGV 72 (386)
T ss_pred CeEEEECCCHHHHHHHHHHHhC--------------CCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccccccc
Confidence 4999999999999999999984 6899999987643221 22322222221
Q ss_pred --------------------------------Hhhc--CCeEEEcCcEEEEEeC--CeEEEEecCCCceEEEecCeEEEc
Q 010217 287 --------------------------------KFSR--DGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWS 330 (515)
Q Consensus 287 --------------------------------~l~~--~gV~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D~vi~a 330 (515)
.|.+ .+++++.++++++++. +++++. ..+|++ +.+|+||.|
T Consensus 73 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~-~~~g~~--~~ad~vIgA 149 (386)
T PRK07236 73 PSRERIYLDRDGRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTAR-FADGRR--ETADLLVGA 149 (386)
T ss_pred CccceEEEeCCCCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEE-ECCCCE--EEeCEEEEC
Confidence 1110 2356899999999964 345544 356764 899999999
Q ss_pred cCCCCccchHH
Q 010217 331 TGIAPHAIIKD 341 (515)
Q Consensus 331 ~G~~~~p~~~~ 341 (515)
-|. +..+..
T Consensus 150 DG~--~S~vR~ 158 (386)
T PRK07236 150 DGG--RSTVRA 158 (386)
T ss_pred CCC--CchHHH
Confidence 994 444433
No 310
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.62 E-value=0.00027 Score=75.98 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=31.3
Q ss_pred CCeEEEECCcHHHHHHHHhccCC--CCeEEEEcCCCCC
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNP--SYDVQVISPRNYF 93 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~--g~~V~vie~~~~~ 93 (515)
..||||||+|.|||+||..++.. |.+|+|+|+....
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~ 41 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPM 41 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCC
Confidence 46999999999999999999865 5899999987543
No 311
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.61 E-value=4.6e-05 Score=79.87 Aligned_cols=39 Identities=26% Similarity=0.386 Sum_probs=35.0
Q ss_pred CeEEEECCcHHHHHHHHhccCC------CCeEEEEcCCCCCccCC
Q 010217 59 KKVVVLGTGWAGTSFLKNLNNP------SYDVQVISPRNYFAFTP 97 (515)
Q Consensus 59 ~~VvIIGgG~AGlsaA~~L~~~------g~~V~vie~~~~~~~~~ 97 (515)
++|+|||||++||+||+.|.+. +++|+|+|+++.+|+..
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~ 46 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKI 46 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceE
Confidence 5899999999999999999864 48999999999998863
No 312
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.61 E-value=9.8e-05 Score=83.82 Aligned_cols=90 Identities=20% Similarity=0.341 Sum_probs=67.0
Q ss_pred ccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccc---------cccHHHHHHHHHHhhcCC
Q 010217 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN---------MFDKRITAFAEEKFSRDG 292 (515)
Q Consensus 222 ~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~---------~~~~~~~~~~~~~l~~~g 292 (515)
++++|+|||+||.|+.+|..|++. |.+|+|+++.+.+.. .++.++.+...+.+++.|
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~--------------G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~G 494 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKY--------------GVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIG 494 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--------------CCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCC
Confidence 578999999999999999999985 689999998875522 135677777778899999
Q ss_pred eEEEcCcEEEEEeCCeEEEEecCCCceEEEecCeEEEccCC
Q 010217 293 IDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 293 V~v~~~~~v~~i~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
|++++++.+ +..+++..+.+ ...+|.||+|||.
T Consensus 495 v~~~~~~~v----g~~~~~~~l~~----~~~yDaViIATGa 527 (1006)
T PRK12775 495 VKIETNKVI----GKTFTVPQLMN----DKGFDAVFLGVGA 527 (1006)
T ss_pred CEEEeCCcc----CCccCHHHHhh----ccCCCEEEEecCC
Confidence 999999754 11222211110 1458999999995
No 313
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.60 E-value=5.1e-05 Score=80.20 Aligned_cols=39 Identities=26% Similarity=0.317 Sum_probs=36.7
Q ss_pred CeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCC
Q 010217 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (515)
Q Consensus 59 ~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~ 97 (515)
+||||||||++||+||..|++.|++|+|+|+++..|+..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~ 40 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCA 40 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence 689999999999999999999999999999999888754
No 314
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.59 E-value=6.2e-05 Score=74.11 Aligned_cols=100 Identities=20% Similarity=0.260 Sum_probs=72.4
Q ss_pred CCeEEEECCcHHHHHHHHhcc--------------CCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhc
Q 010217 58 KKKVVVLGTGWAGTSFLKNLN--------------NPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKK 123 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~--------------~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 123 (515)
.-++|||||||.|+.+|.+|+ ....+||++|..+... +.. .+.+.+...+++.+.
T Consensus 218 lLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL-----~mF------dkrl~~yae~~f~~~ 286 (491)
T KOG2495|consen 218 LLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL-----NMF------DKRLVEYAENQFVRD 286 (491)
T ss_pred eEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH-----HHH------HHHHHHHHHHHhhhc
Confidence 458999999999999999987 3456899999886432 111 124555667888888
Q ss_pred CceEEEEEeEEEEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCC
Q 010217 124 NVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANT 177 (515)
Q Consensus 124 ~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~ 177 (515)
+|+++ ..+.|..++.+ .++++.. +++..+++|--||.|||..|++
T Consensus 287 ~I~~~-~~t~Vk~V~~~--~I~~~~~------~g~~~~iPYG~lVWatG~~~rp 331 (491)
T KOG2495|consen 287 GIDLD-TGTMVKKVTEK--TIHAKTK------DGEIEEIPYGLLVWATGNGPRP 331 (491)
T ss_pred cceee-cccEEEeecCc--EEEEEcC------CCceeeecceEEEecCCCCCch
Confidence 98874 46677777744 5665543 2334689999999999987654
No 315
>PRK12831 putative oxidoreductase; Provisional
Probab=97.57 E-value=0.00014 Score=76.07 Aligned_cols=91 Identities=19% Similarity=0.293 Sum_probs=65.5
Q ss_pred hccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccc-------cc--ccH-HHHHHHHHHhhc
Q 010217 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-------NM--FDK-RITAFAEEKFSR 290 (515)
Q Consensus 221 ~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l-------~~--~~~-~~~~~~~~~l~~ 290 (515)
..+++|+|||+|+.|+.+|..|++. +.+|+++++.+.+. +. ++. .+.....+.+++
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~--------------G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~ 203 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKM--------------GYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKK 203 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhC--------------CCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHH
Confidence 4678999999999999999999985 68999999876532 11 222 255556677888
Q ss_pred CCeEEEcCcEEEEEeCCeEEEEecCCCceEEEecCeEEEccCC
Q 010217 291 DGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 291 ~gV~v~~~~~v~~i~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
.||++++++.+. ..+.+ .+... .+.+|.||+|||.
T Consensus 204 ~gv~i~~~~~v~----~~v~~---~~~~~-~~~~d~viiAtGa 238 (464)
T PRK12831 204 LGVKIETNVVVG----KTVTI---DELLE-EEGFDAVFIGSGA 238 (464)
T ss_pred cCCEEEcCCEEC----CcCCH---HHHHh-ccCCCEEEEeCCC
Confidence 999999998662 11211 11111 2679999999995
No 316
>PLN02529 lysine-specific histone demethylase 1
Probab=97.57 E-value=8e-05 Score=80.91 Aligned_cols=44 Identities=23% Similarity=0.253 Sum_probs=39.6
Q ss_pred CCCCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCC
Q 010217 54 MGIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (515)
Q Consensus 54 ~~~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~ 97 (515)
+....++|+|||||+|||+||..|++.|++|+|+|+++..|+..
T Consensus 156 ~~~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~ 199 (738)
T PLN02529 156 EEGTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRV 199 (738)
T ss_pred cccCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCce
Confidence 34567899999999999999999999999999999999888763
No 317
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.57 E-value=6.7e-05 Score=75.47 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=35.4
Q ss_pred CeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccC
Q 010217 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT 96 (515)
Q Consensus 59 ~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~ 96 (515)
.||+|||||+||+++|..|++.|.+|+|+|+++..|+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~ 39 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGN 39 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCc
Confidence 58999999999999999999999999999999888874
No 318
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.55 E-value=5.3e-05 Score=80.30 Aligned_cols=53 Identities=15% Similarity=0.168 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhcCCeEEEcCcEEEEEe--CCeEEEEecCCCceEEEecCeEEEccC
Q 010217 278 KRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTG 332 (515)
Q Consensus 278 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~~~v~~~~~~~G~~~~i~~D~vi~a~G 332 (515)
..+.+.+.+.+++.|++|++++.|.+|. ++++..+.+.+|+. +.+|.||++++
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~--~~ad~VI~a~~ 273 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGER--LDADAVVSNAD 273 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCE--EECCEEEECCc
Confidence 4677888888899999999999999986 34444444566764 89999999887
No 319
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.53 E-value=0.00032 Score=76.35 Aligned_cols=117 Identities=20% Similarity=0.243 Sum_probs=80.1
Q ss_pred cccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHhccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEE
Q 010217 187 CNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLL 266 (515)
Q Consensus 187 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv 266 (515)
...+++++-+ -+...|+..=+..-|+ ..+.+++|+|||+||.|+-+|..|.+. |..|+++
T Consensus 1755 pv~iksie~a-----iid~af~egwm~p~pp-~~rtg~~vaiigsgpaglaaadqlnk~--------------gh~v~vy 1814 (2142)
T KOG0399|consen 1755 PVGIKSIECA-----IIDKAFEEGWMKPCPP-AFRTGKRVAIIGSGPAGLAAADQLNKA--------------GHTVTVY 1814 (2142)
T ss_pred CccccchhhH-----HHHHHHHhcCCccCCc-ccccCcEEEEEccCchhhhHHHHHhhc--------------CcEEEEE
Confidence 3445555533 2334454443333232 335899999999999999999999985 7899999
Q ss_pred eccccccc---------cccHHHHHHHHHHhhcCCeEEEcCcEEEEEeCCeEEEEecCCCceEEEecCeEEEccCC
Q 010217 267 EAADHILN---------MFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 267 ~~~~~~l~---------~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
+|.+++.. .+|..+.+.-.+.|.++||+|++|++|-+- +.+ |+- .-+.|.||+|+|-
T Consensus 1815 er~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~----vs~----d~l--~~~~daiv~a~gs 1880 (2142)
T KOG0399|consen 1815 ERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH----VSL----DEL--KKENDAIVLATGS 1880 (2142)
T ss_pred EecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc----ccH----HHH--hhccCeEEEEeCC
Confidence 99998732 256667777778899999999999877321 111 111 1346788888884
No 320
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.53 E-value=0.00015 Score=75.36 Aligned_cols=31 Identities=29% Similarity=0.376 Sum_probs=25.6
Q ss_pred eEEEECCcHHHHHHHHhccCCC---CeEEEEcCC
Q 010217 60 KVVVLGTGWAGTSFLKNLNNPS---YDVQVISPR 90 (515)
Q Consensus 60 ~VvIIGgG~AGlsaA~~L~~~g---~~V~vie~~ 90 (515)
||||||||+||..+|..|++.+ .+|+|||+.
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~ 34 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESP 34 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-S
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 7999999999999999999655 999999976
No 321
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.53 E-value=0.00014 Score=72.68 Aligned_cols=44 Identities=30% Similarity=0.466 Sum_probs=39.8
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCcc
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLL 99 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~ 99 (515)
....+|||||+|.+||++|+.|.+.|++|+|+|.++++|+....
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t 48 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLT 48 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEE
Confidence 44689999999999999999999999999999999999987543
No 322
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.53 E-value=6.6e-05 Score=78.47 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=35.5
Q ss_pred eEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCC
Q 010217 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (515)
Q Consensus 60 ~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~ 97 (515)
+|+|||||+|||+||++|.+.|++|+|+|+++..|+..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~ 38 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKV 38 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCc
Confidence 59999999999999999999999999999999988854
No 323
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.52 E-value=0.00041 Score=73.06 Aligned_cols=83 Identities=18% Similarity=0.132 Sum_probs=58.5
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEEE
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~i 137 (515)
.++|+|||+|.+|+++|..|+..|++|+++|.++. .....+...+++.|+++.. ...+.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~------------------~~~~~~~~~l~~~gv~~~~-~~~~~-- 74 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD------------------ERHRALAAILEALGATVRL-GPGPT-- 74 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch------------------hhhHHHHHHHHHcCCEEEE-CCCcc--
Confidence 56899999999999999999999999999997642 1111234556677866522 21110
Q ss_pred ecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCCCCCC
Q 010217 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGV 183 (515)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ipG~ 183 (515)
. ...+|.||+++|..|+.|.+...
T Consensus 75 --------~--------------~~~~D~Vv~s~Gi~~~~~~~~~a 98 (480)
T PRK01438 75 --------L--------------PEDTDLVVTSPGWRPDAPLLAAA 98 (480)
T ss_pred --------c--------------cCCCCEEEECCCcCCCCHHHHHH
Confidence 0 34589999999999877654443
No 324
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.52 E-value=0.00029 Score=76.66 Aligned_cols=88 Identities=24% Similarity=0.380 Sum_probs=66.9
Q ss_pred ccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccc---------cccHHHHHHHHHHhhcCC
Q 010217 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN---------MFDKRITAFAEEKFSRDG 292 (515)
Q Consensus 222 ~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~---------~~~~~~~~~~~~~l~~~g 292 (515)
.+++|+|||+|+.|+.+|..|++. |.+|+++++.+.+.. .++..+.+...+.+++.|
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~--------------G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~G 374 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARA--------------GVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMG 374 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHc--------------CCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCC
Confidence 578999999999999999999985 689999999886431 245666666678888999
Q ss_pred eEEEcCcEEEEEeCCeEEEEecCCCceEEEecCeEEEccCC
Q 010217 293 IDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 293 V~v~~~~~v~~i~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
|++++++.+.. .+.+. +. ...+|.||+|+|.
T Consensus 375 v~~~~~~~v~~----~~~~~---~l---~~~~DaV~latGa 405 (639)
T PRK12809 375 IDFHLNCEIGR----DITFS---DL---TSEYDAVFIGVGT 405 (639)
T ss_pred eEEEcCCccCC----cCCHH---HH---HhcCCEEEEeCCC
Confidence 99999987631 11111 11 1468999999995
No 325
>PLN02568 polyamine oxidase
Probab=97.52 E-value=8.9e-05 Score=78.56 Aligned_cols=41 Identities=24% Similarity=0.442 Sum_probs=36.6
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCC-----CeEEEEcCCCCCccCC
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPS-----YDVQVISPRNYFAFTP 97 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g-----~~V~vie~~~~~~~~~ 97 (515)
+.++|+|||||+|||+||..|.+.| ++|+|+|+++..|+..
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~ 49 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRI 49 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeE
Confidence 3579999999999999999999766 8999999999988863
No 326
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.50 E-value=0.00061 Score=68.32 Aligned_cols=59 Identities=20% Similarity=0.437 Sum_probs=42.0
Q ss_pred HHHHHHHHHhhcCCeEEEcCcEEEEEeC--Ce--EEEEecCCCceEEEecCeEEEccCCCCccch
Q 010217 279 RITAFAEEKFSRDGIDVKLGSMVVKVTD--KE--IFTKVRGNGETSSMPYGMVVWSTGIAPHAII 339 (515)
Q Consensus 279 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~--v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~ 339 (515)
.+.+.+.+.+++.|++++.++++..++. ++ +.+....+|+..++.+|+||-|-|. +..+
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~--~S~v 174 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGA--HSKV 174 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGT--T-HH
T ss_pred HHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCc--ccch
Confidence 4556667777788999999999998753 34 3444445677667999999999994 5444
No 327
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.49 E-value=0.00038 Score=76.03 Aligned_cols=89 Identities=29% Similarity=0.336 Sum_probs=65.8
Q ss_pred hccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccc-------c--cccHHHHHHHHHHhhcC
Q 010217 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-------N--MFDKRITAFAEEKFSRD 291 (515)
Q Consensus 221 ~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l-------~--~~~~~~~~~~~~~l~~~ 291 (515)
..+++|+|||+|+.|+.+|..|.+. |.+|+++++.+.+. + .++.++.....+.+++.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~--------------G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~ 390 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARN--------------GVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAM 390 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC--------------CCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHC
Confidence 3678999999999999999999985 68999999877642 1 23556666666778889
Q ss_pred CeEEEcCcEEEEEeCCeEEEEecCCCceEEEecCeEEEccCC
Q 010217 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 292 gV~v~~~~~v~~i~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
||++++++.+.. .+.+.. - ...+|.||+|+|.
T Consensus 391 Gv~~~~~~~v~~----~i~~~~---~---~~~~DavilAtGa 422 (654)
T PRK12769 391 GIEFELNCEVGK----DISLES---L---LEDYDAVFVGVGT 422 (654)
T ss_pred CeEEECCCEeCC----cCCHHH---H---HhcCCEEEEeCCC
Confidence 999999987621 111111 1 1469999999995
No 328
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.48 E-value=0.00094 Score=63.34 Aligned_cols=41 Identities=27% Similarity=0.461 Sum_probs=35.1
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcc--CCCCeEEEEcCCCCCcc
Q 010217 55 GIKKKKVVVLGTGWAGTSFLKNLN--NPSYDVQVISPRNYFAF 95 (515)
Q Consensus 55 ~~~~~~VvIIGgG~AGlsaA~~L~--~~g~~V~vie~~~~~~~ 95 (515)
++..+|+||||||..|++.|+.|. ..+.+|.|+|++..+.-
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~ 87 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAV 87 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhce
Confidence 455799999999999999999887 56999999999876653
No 329
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.48 E-value=8.9e-05 Score=74.91 Aligned_cols=36 Identities=28% Similarity=0.295 Sum_probs=32.8
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCC
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYF 93 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~ 93 (515)
.++|+|||||++|+.||..|++.|++|+|+|+++..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 479999999999999999999999999999977543
No 330
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.46 E-value=0.00087 Score=71.76 Aligned_cols=100 Identities=16% Similarity=0.167 Sum_probs=66.1
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEE
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~ 136 (515)
..++|+|||||+.|+.+|..|.+.|.+|+++++.+.+.. .... ...++...++++. .+..+..
T Consensus 142 ~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~-------------~~~~---~~~~~~~~gV~i~-~~~~V~~ 204 (555)
T TIGR03143 142 TGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC-------------AKLI---AEKVKNHPKIEVK-FNTELKE 204 (555)
T ss_pred CCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc-------------CHHH---HHHHHhCCCcEEE-eCCEEEE
Confidence 458999999999999999999999999999998764311 0011 1223344588874 4778888
Q ss_pred EecCCCE--EEEeeCCccCCCCCceEE--eecCE----EEEccCCCcCCC
Q 010217 137 IDAENKK--VYCRSSQNTNLNGKEEFC--MDYDY----LVIAMGARANTF 178 (515)
Q Consensus 137 id~~~~~--v~~~~~~~~~~~~~~~~~--~~~d~----lviAtG~~~~~~ 178 (515)
++.++.. +.+.+.. +++..+ +.+|. |++|+|..|+..
T Consensus 205 i~~~~~v~~v~~~~~~-----~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~ 249 (555)
T TIGR03143 205 ATGDDGLRYAKFVNNV-----TGEITEYKAPKDAGTFGVFVFVGYAPSSE 249 (555)
T ss_pred EEcCCcEEEEEEEECC-----CCCEEEEeccccccceEEEEEeCCCCChh
Confidence 8765432 2222211 222223 34666 999999998754
No 331
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.45 E-value=0.00026 Score=74.24 Aligned_cols=88 Identities=27% Similarity=0.364 Sum_probs=65.1
Q ss_pred ccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccc---------cccHHHHHHHHHHhhcCC
Q 010217 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN---------MFDKRITAFAEEKFSRDG 292 (515)
Q Consensus 222 ~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~---------~~~~~~~~~~~~~l~~~g 292 (515)
.+++|+|||+|+.|+.+|..|.+. +.+|+++++.+.+.. .++.++.....+.+.+.|
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~--------------G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~g 207 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARA--------------GHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEG 207 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC--------------CCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCC
Confidence 567999999999999999999874 689999998876532 134555556667788899
Q ss_pred eEEEcCcEEEEEeCCeEEEEecCCCceEEEecCeEEEccCC
Q 010217 293 IDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 293 V~v~~~~~v~~i~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
|++++++.+.. .+.. +.. ...+|.||+|+|.
T Consensus 208 v~~~~~~~v~~----~~~~----~~~--~~~~d~vvlAtGa 238 (471)
T PRK12810 208 IEFRTNVEVGK----DITA----EEL--LAEYDAVFLGTGA 238 (471)
T ss_pred cEEEeCCEECC----cCCH----HHH--HhhCCEEEEecCC
Confidence 99999987632 0000 011 2579999999995
No 332
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.44 E-value=0.00034 Score=78.31 Aligned_cols=87 Identities=16% Similarity=0.232 Sum_probs=62.6
Q ss_pred ccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccc-------c--ccHHHHHHHHHHhhcCC
Q 010217 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN-------M--FDKRITAFAEEKFSRDG 292 (515)
Q Consensus 222 ~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~-------~--~~~~~~~~~~~~l~~~g 292 (515)
.+++|+||||||.|+.+|..|++. |.+|+|+++.+.+.. . ++.+......+.+.+.|
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~--------------G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~G 601 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARA--------------GHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHG 601 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC--------------CCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcC
Confidence 568999999999999999999985 689999998875422 1 23445555556777889
Q ss_pred eEEEcCcEEEEEeCCeEEEEecCCCceEEEecCeEEEccCC
Q 010217 293 IDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 293 V~v~~~~~v~~i~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
|++++++.. .+.+. +.+ ...+|.||+|||.
T Consensus 602 Ve~~~g~~~------d~~ve---~l~--~~gYDaVIIATGA 631 (1012)
T TIGR03315 602 VEFKYGCSP------DLTVA---ELK--NQGYKYVILAIGA 631 (1012)
T ss_pred cEEEEeccc------ceEhh---hhh--cccccEEEECCCC
Confidence 999987431 11111 122 2568999999995
No 333
>PLN02487 zeta-carotene desaturase
Probab=97.42 E-value=0.00017 Score=76.58 Aligned_cols=40 Identities=28% Similarity=0.410 Sum_probs=36.6
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccC
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT 96 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~ 96 (515)
.+++|+|||||++|+++|+.|.+.|++|+|+|+.+..++.
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~ 113 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGK 113 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCc
Confidence 3469999999999999999999999999999999988764
No 334
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.41 E-value=0.00048 Score=70.10 Aligned_cols=35 Identities=31% Similarity=0.421 Sum_probs=31.0
Q ss_pred eEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccc
Q 010217 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL 273 (515)
Q Consensus 225 ~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l 273 (515)
+|+|||||.+|+|+|..|++. |.+|+|+++++.++
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~--------------G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQA--------------GVPVILYEMRPEKL 36 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhC--------------CCcEEEEecccccc
Confidence 799999999999999999985 78999999877643
No 335
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.40 E-value=0.00069 Score=71.74 Aligned_cols=35 Identities=31% Similarity=0.392 Sum_probs=30.6
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCC
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~ 92 (515)
....||||||+|.||++||..++ +.+|+|+|+.+.
T Consensus 7 ~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 7 ILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred CCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 34579999999999999999996 569999998865
No 336
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.40 E-value=0.00013 Score=77.02 Aligned_cols=53 Identities=13% Similarity=0.170 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhcCCeEEEcCcEEEEEe--CCeEEEEecCCCceEEEecCeEEEccC
Q 010217 278 KRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTG 332 (515)
Q Consensus 278 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~~~v~~~~~~~G~~~~i~~D~vi~a~G 332 (515)
..+.+.+.+.+++.|++|++++.|++|. ++.+..+.+.+|++ +.+|.||+++|
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~--~~ad~vV~a~~ 283 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEK--IYAKRIVSNAT 283 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCE--EEcCEEEECCC
Confidence 4677788889999999999999999985 34455555566764 89999999988
No 337
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.39 E-value=0.00016 Score=78.97 Aligned_cols=44 Identities=27% Similarity=0.340 Sum_probs=39.3
Q ss_pred CCCCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCC
Q 010217 54 MGIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (515)
Q Consensus 54 ~~~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~ 97 (515)
+....++|+|||||+||++||+.|.+.|++|+|+|+++..|+..
T Consensus 234 ~~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~ 277 (808)
T PLN02328 234 EGVEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRV 277 (808)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcc
Confidence 34557899999999999999999999999999999999888753
No 338
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.37 E-value=0.0015 Score=65.54 Aligned_cols=92 Identities=24% Similarity=0.367 Sum_probs=61.6
Q ss_pred eEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEe-cccccc------------------------------
Q 010217 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLE-AADHIL------------------------------ 273 (515)
Q Consensus 225 ~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~-~~~~~l------------------------------ 273 (515)
.|+|||||..|+|.|..+++. |.+|.|+. ..+.+.
T Consensus 1 DViVVGgG~AG~eAA~aaAr~--------------G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~ 66 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARM--------------GAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRA 66 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHT--------------T--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHC--------------CCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHH
Confidence 489999999999999999997 57788772 222211
Q ss_pred ----------------c-------ccc-HHHHHHHHHHhhc-CCeEEEcCcEEEEEe--CCeEEEEecCCCceEEEecCe
Q 010217 274 ----------------N-------MFD-KRITAFAEEKFSR-DGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGM 326 (515)
Q Consensus 274 ----------------~-------~~~-~~~~~~~~~~l~~-~gV~v~~~~~v~~i~--~~~v~~~~~~~G~~~~i~~D~ 326 (515)
+ ..| ......+.+.+++ .+|+++. .+|+++. ++.+..+.+.+|+. +.+|.
T Consensus 67 aD~~~i~~~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~-~~V~~l~~e~~~v~GV~~~~g~~--~~a~~ 143 (392)
T PF01134_consen 67 ADETGIHFRMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQ-GEVTDLIVENGKVKGVVTKDGEE--IEADA 143 (392)
T ss_dssp HHHHEEEEEEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEE-S-EEEEEECTTEEEEEEETTSEE--EEECE
T ss_pred HhHhhhhhhcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEE-cccceEEecCCeEEEEEeCCCCE--EecCE
Confidence 0 011 1234445555555 7899874 6788874 56777777788885 99999
Q ss_pred EEEccCC
Q 010217 327 VVWSTGI 333 (515)
Q Consensus 327 vi~a~G~ 333 (515)
||+|||.
T Consensus 144 vVlaTGt 150 (392)
T PF01134_consen 144 VVLATGT 150 (392)
T ss_dssp EEE-TTT
T ss_pred EEEeccc
Confidence 9999994
No 339
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.37 E-value=0.00082 Score=70.79 Aligned_cols=78 Identities=22% Similarity=0.277 Sum_probs=59.2
Q ss_pred ccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEE
Q 010217 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMV 301 (515)
Q Consensus 222 ~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v 301 (515)
.+++|+|||+|.+|+++|..|.+. |.+|+++++.+. .....+.+.+++.||+++++..+
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~--------------G~~V~~~d~~~~-------~~~~~~~~~l~~~gv~~~~~~~~ 73 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLEL--------------GARVTVVDDGDD-------ERHRALAAILEALGATVRLGPGP 73 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--------------CCEEEEEeCCch-------hhhHHHHHHHHHcCCEEEECCCc
Confidence 456999999999999999998874 689999987652 22344556788889999887644
Q ss_pred EEEeCCeEEEEecCCCceEEEecCeEEEccCCCCccch
Q 010217 302 VKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAII 339 (515)
Q Consensus 302 ~~i~~~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~ 339 (515)
. . ...+|+||+++|+ .|+.
T Consensus 74 ~----------~-------~~~~D~Vv~s~Gi--~~~~ 92 (480)
T PRK01438 74 T----------L-------PEDTDLVVTSPGW--RPDA 92 (480)
T ss_pred c----------c-------cCCCCEEEECCCc--CCCC
Confidence 2 0 1568999999995 5555
No 340
>PLN02612 phytoene desaturase
Probab=97.36 E-value=0.00021 Score=76.48 Aligned_cols=43 Identities=28% Similarity=0.305 Sum_probs=38.5
Q ss_pred CCCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCC
Q 010217 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (515)
Q Consensus 55 ~~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~ 97 (515)
...+++|+|||||++||+||++|.+.|++|+|+|+++..|+..
T Consensus 90 ~~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~ 132 (567)
T PLN02612 90 PAKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKV 132 (567)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcc
Confidence 4456899999999999999999999999999999998887753
No 341
>PLN02661 Putative thiazole synthesis
Probab=97.36 E-value=0.0069 Score=59.89 Aligned_cols=96 Identities=22% Similarity=0.246 Sum_probs=61.7
Q ss_pred eEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccc---------------------------ccc
Q 010217 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN---------------------------MFD 277 (515)
Q Consensus 225 ~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~---------------------------~~~ 277 (515)
.|+|||+|+.|+-+|..|.+. ++.+|+++++...+.. .++
T Consensus 94 DVlIVGaG~AGl~AA~~La~~-------------~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd 160 (357)
T PLN02661 94 DVVIVGAGSAGLSCAYELSKN-------------PNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYD 160 (357)
T ss_pred CEEEECCHHHHHHHHHHHHHc-------------CCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcc
Confidence 899999999999999999853 2578999887653311 001
Q ss_pred -----------HHHHHHHH-HHhhcCCeEEEcCcEEEEEe--CCeEEEEe------cC---CC---ceEEEecCeEEEcc
Q 010217 278 -----------KRITAFAE-EKFSRDGIDVKLGSMVVKVT--DKEIFTKV------RG---NG---ETSSMPYGMVVWST 331 (515)
Q Consensus 278 -----------~~~~~~~~-~~l~~~gV~v~~~~~v~~i~--~~~v~~~~------~~---~G---~~~~i~~D~vi~a~ 331 (515)
..+...+. +.+++.||+++.++.+.++. ++.+..+. .. ++ +...+.++.||+||
T Consensus 161 ~~dgy~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlAT 240 (357)
T PLN02661 161 EQENYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSC 240 (357)
T ss_pred cCCCeeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcC
Confidence 01111222 34445799999999988875 23322221 01 11 23468999999999
Q ss_pred CC
Q 010217 332 GI 333 (515)
Q Consensus 332 G~ 333 (515)
|-
T Consensus 241 Gh 242 (357)
T PLN02661 241 GH 242 (357)
T ss_pred CC
Confidence 94
No 342
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.34 E-value=0.00019 Score=77.05 Aligned_cols=36 Identities=31% Similarity=0.422 Sum_probs=33.3
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCC
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~ 91 (515)
..+.+|+|||||+||+++|..|++.|++|+|+|+.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 456899999999999999999999999999999864
No 343
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.33 E-value=0.00015 Score=75.93 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=34.7
Q ss_pred eEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccC
Q 010217 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT 96 (515)
Q Consensus 60 ~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~ 96 (515)
+|+|||||++|++||..|.+.|++|+|+|+++..|+.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~ 37 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGK 37 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCce
Confidence 5899999999999999999999999999999988774
No 344
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=97.33 E-value=0.00017 Score=70.75 Aligned_cols=45 Identities=27% Similarity=0.245 Sum_probs=37.6
Q ss_pred CCCCCCeEEEECCcHHHHHHHHhcc------CCCCeEEEEcCCCCCccCCc
Q 010217 54 MGIKKKKVVVLGTGWAGTSFLKNLN------NPSYDVQVISPRNYFAFTPL 98 (515)
Q Consensus 54 ~~~~~~~VvIIGgG~AGlsaA~~L~------~~g~~V~vie~~~~~~~~~~ 98 (515)
......||+|||||||||+||++|. ....+|.|+|+....|++.+
T Consensus 72 R~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gghtl 122 (621)
T KOG2415|consen 72 RESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTL 122 (621)
T ss_pred hhhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCcee
Confidence 3345689999999999999999987 45678999999998888643
No 345
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.33 E-value=0.00056 Score=74.54 Aligned_cols=89 Identities=16% Similarity=0.249 Sum_probs=65.3
Q ss_pred hccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccc-------c--cccHHHHHHHHHHhhcC
Q 010217 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-------N--MFDKRITAFAEEKFSRD 291 (515)
Q Consensus 221 ~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l-------~--~~~~~~~~~~~~~l~~~ 291 (515)
..+++|+|||+|+.|+.+|..|.+. +.+|+++++.+.+. + .++.++.+...+.+.+.
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~--------------G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~ 256 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRK--------------GHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAM 256 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--------------CCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHc
Confidence 3578999999999999999999885 68999999887652 2 13556666666778889
Q ss_pred CeEEEcCcEEEEEeCCeEEEEecCCCceEEEecCeEEEccCC
Q 010217 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 292 gV~v~~~~~v~~i~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
||++++++.+.. .+.+ .+.. ..+|.||+|+|.
T Consensus 257 Gv~i~~~~~v~~----dv~~---~~~~---~~~DaVilAtGa 288 (652)
T PRK12814 257 GAEFRFNTVFGR----DITL---EELQ---KEFDAVLLAVGA 288 (652)
T ss_pred CCEEEeCCcccC----ccCH---HHHH---hhcCEEEEEcCC
Confidence 999999876421 1111 1112 359999999995
No 346
>PLN02676 polyamine oxidase
Probab=97.32 E-value=0.0002 Score=75.16 Aligned_cols=41 Identities=20% Similarity=0.367 Sum_probs=37.3
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCC-eEEEEcCCCCCccCC
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSY-DVQVISPRNYFAFTP 97 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~-~V~vie~~~~~~~~~ 97 (515)
..++|+|||||++||+||++|++.|. +|+|+|+++.+|+..
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~ 66 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRM 66 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcc
Confidence 46799999999999999999999998 699999999988864
No 347
>PRK08244 hypothetical protein; Provisional
Probab=97.31 E-value=0.0025 Score=67.40 Aligned_cols=99 Identities=25% Similarity=0.411 Sum_probs=66.6
Q ss_pred eEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccc------------------------------
Q 010217 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN------------------------------ 274 (515)
Q Consensus 225 ~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~------------------------------ 274 (515)
.|+|||||++|+-+|..|.+. |.+|+|+++.+...+
T Consensus 4 dVlIVGaGpaGl~lA~~L~~~--------------G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~ 69 (493)
T PRK08244 4 EVIIIGGGPVGLMLASELALA--------------GVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRK 69 (493)
T ss_pred CEEEECCCHHHHHHHHHHHHC--------------CCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhccc
Confidence 799999999999999999885 456666655432100
Q ss_pred --------------------------ccc-HHHHHHHHHHhhcCCeEEEcCcEEEEEeC--CeEEEEec-CCCceEEEec
Q 010217 275 --------------------------MFD-KRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVR-GNGETSSMPY 324 (515)
Q Consensus 275 --------------------------~~~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~v~~~~~-~~G~~~~i~~ 324 (515)
.++ ..+.+.+.+.+++.|++++.++++++++. +++.+... .+|+ .++.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~-~~i~a 148 (493)
T PRK08244 70 LPSGHFAGLDTRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGL-RTLTS 148 (493)
T ss_pred ccceEEecccccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCcc-EEEEe
Confidence 000 12345555666778999999999999863 44544321 2452 35999
Q ss_pred CeEEEccCCCCccchH
Q 010217 325 GMVVWSTGIAPHAIIK 340 (515)
Q Consensus 325 D~vi~a~G~~~~p~~~ 340 (515)
|.||.|.|. ...+.
T Consensus 149 ~~vVgADG~--~S~vR 162 (493)
T PRK08244 149 SYVVGADGA--GSIVR 162 (493)
T ss_pred CEEEECCCC--ChHHH
Confidence 999999994 54443
No 348
>PLN02463 lycopene beta cyclase
Probab=97.31 E-value=0.0023 Score=66.23 Aligned_cols=92 Identities=20% Similarity=0.391 Sum_probs=63.3
Q ss_pred eEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccc-c-c---------------------------
Q 010217 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-N-M--------------------------- 275 (515)
Q Consensus 225 ~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l-~-~--------------------------- 275 (515)
.|+|||||+.|+-+|..|.+. |.+|.++++.+... + .
T Consensus 30 DVvIVGaGpAGLalA~~La~~--------------Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~ 95 (447)
T PLN02463 30 DLVVVGGGPAGLAVAQQVSEA--------------GLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVY 95 (447)
T ss_pred eEEEECCCHHHHHHHHHHHHC--------------CCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEE
Confidence 899999999999999999874 67888887654211 0 0
Q ss_pred ---------------c-cHHHHHHHHHHhhcCCeEEEcCcEEEEEeC--CeEEEEecCCCceEEEecCeEEEccCCC
Q 010217 276 ---------------F-DKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIA 334 (515)
Q Consensus 276 ---------------~-~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~~ 334 (515)
. ...+.+.+.+.+.+.||+++ ..+|++++. ++..+. +.+|++ +.+|.||.|+|..
T Consensus 96 ~~~~~~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~-~~dG~~--i~A~lVI~AdG~~ 168 (447)
T PLN02463 96 IDDGKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVV-CDDGVK--IQASLVLDATGFS 168 (447)
T ss_pred EeCCCCccccCcceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEE-ECCCCE--EEcCEEEECcCCC
Confidence 0 11233445555667899997 468888863 333333 356764 9999999999963
No 349
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0024 Score=62.41 Aligned_cols=94 Identities=21% Similarity=0.308 Sum_probs=66.0
Q ss_pred eEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcE-EEEEeccccc-----------ccc-----ccHHHHHHHHHH
Q 010217 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVK-ITLLEAADHI-----------LNM-----FDKRITAFAEEK 287 (515)
Q Consensus 225 ~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~-Vtlv~~~~~~-----------l~~-----~~~~~~~~~~~~ 287 (515)
.|+|||+||.|+-.|.++.+. +.+ +.+++....- .|. ..+++.+.+.+.
T Consensus 5 DviIIG~GPAGl~AAiya~r~--------------~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~ 70 (305)
T COG0492 5 DVIIIGGGPAGLTAAIYAARA--------------GLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQ 70 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHc--------------CCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHH
Confidence 899999999999999999885 445 4444432110 111 345677777788
Q ss_pred hhcCCeEEEcCcEEEEEeCCe-EEEEecCCCceEEEecCeEEEccCCCCc
Q 010217 288 FSRDGIDVKLGSMVVKVTDKE-IFTKVRGNGETSSMPYGMVVWSTGIAPH 336 (515)
Q Consensus 288 l~~~gV~v~~~~~v~~i~~~~-v~~~~~~~G~~~~i~~D~vi~a~G~~~~ 336 (515)
....|+++.. ..+.+++..+ .-.+.+.+|+ +.|+.||+|||....
T Consensus 71 a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~---~~ak~vIiAtG~~~~ 116 (305)
T COG0492 71 AEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT---YEAKAVIIATGAGAR 116 (305)
T ss_pred HhhcCeEEEE-EEEEEEeecCceEEEEECCCe---EEEeEEEECcCCccc
Confidence 8888999988 7788887654 3333334555 899999999996544
No 350
>PTZ00367 squalene epoxidase; Provisional
Probab=97.29 E-value=0.00024 Score=75.54 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=32.8
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCC
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~ 91 (515)
..+||+|||||++|+++|..|++.|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 46899999999999999999999999999999875
No 351
>PRK06834 hypothetical protein; Provisional
Probab=97.28 E-value=0.0024 Score=67.27 Aligned_cols=97 Identities=22% Similarity=0.350 Sum_probs=66.8
Q ss_pred eEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccc---c---cc----------------------
Q 010217 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL---N---MF---------------------- 276 (515)
Q Consensus 225 ~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l---~---~~---------------------- 276 (515)
.|+|||+|++|+-+|..|.+. |.+|+++++.+... + .+
T Consensus 5 dVlIVGaGp~Gl~lA~~La~~--------------G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~ 70 (488)
T PRK06834 5 AVVIAGGGPTGLMLAGELALA--------------GVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQ 70 (488)
T ss_pred eEEEECCCHHHHHHHHHHHHC--------------CCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCC
Confidence 899999999999999999885 45666665543210 0 00
Q ss_pred ----------------------------cHHHHHHHHHHhhcCCeEEEcCcEEEEEeC--CeEEEEecCCCceEEEecCe
Q 010217 277 ----------------------------DKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGM 326 (515)
Q Consensus 277 ----------------------------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D~ 326 (515)
...+.+.+.+.+++.||+++.+++++.++. +++.+.. .+|+ ++.+|.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~-~~g~--~i~a~~ 147 (488)
T PRK06834 71 VAQVTGFAATRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVEL-SDGR--TLRAQY 147 (488)
T ss_pred ccccceeeeEecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEE-CCCC--EEEeCE
Confidence 012334445556777999999999999864 4555543 4565 499999
Q ss_pred EEEccCCCCccchH
Q 010217 327 VVWSTGIAPHAIIK 340 (515)
Q Consensus 327 vi~a~G~~~~p~~~ 340 (515)
||.|.|. .+.+.
T Consensus 148 vVgADG~--~S~vR 159 (488)
T PRK06834 148 LVGCDGG--RSLVR 159 (488)
T ss_pred EEEecCC--CCCcH
Confidence 9999994 44443
No 352
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.28 E-value=0.0086 Score=54.24 Aligned_cols=134 Identities=22% Similarity=0.296 Sum_probs=81.0
Q ss_pred eEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccccc-------cc--------------------
Q 010217 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM-------FD-------------------- 277 (515)
Q Consensus 225 ~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~-------~~-------------------- 277 (515)
.|+|||+||+|+-+|.+|++. +.+|.+++++-.+... |+
T Consensus 32 DViIVGaGPsGLtAAyyLAk~--------------g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye 97 (262)
T COG1635 32 DVIIVGAGPSGLTAAYYLAKA--------------GLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYE 97 (262)
T ss_pred cEEEECcCcchHHHHHHHHhC--------------CceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcce
Confidence 899999999999999999984 7899999887644210 11
Q ss_pred -----------HHHHHHHHHHhhcCCeEEEcCcEEEEEe--CC-eEEEEec------CCC---ceEEEecCeEEEccCCC
Q 010217 278 -----------KRITAFAEEKFSRDGIDVKLGSMVVKVT--DK-EIFTKVR------GNG---ETSSMPYGMVVWSTGIA 334 (515)
Q Consensus 278 -----------~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~~-~v~~~~~------~~G---~~~~i~~D~vi~a~G~~ 334 (515)
.++...+....-+.|.++..++.+..+- ++ ++..+.. ..+ ....++++.||-|||.
T Consensus 98 ~~e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGH- 176 (262)
T COG1635 98 EEEDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGH- 176 (262)
T ss_pred ecCCceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCC-
Confidence 1122223333345689999999888873 33 3322211 111 1235889999999994
Q ss_pred CccchHHH-HHHh---CCC--CCC--------ceeeCCCccccCCCCEEEeccccc
Q 010217 335 PHAIIKDF-MKQV---GQT--NRR--------ALATDEWLRVEGSDSIYALGDCAT 376 (515)
Q Consensus 335 ~~p~~~~l-~~~~---~~~--~~g--------~i~vd~~l~t~~~~~IyA~GD~~~ 376 (515)
...+-.+ .+.. ++. ..+ .+.|+...++ +||+|++|=++.
T Consensus 177 -da~v~~~~~kr~~~l~~~~~Ge~~mw~e~~E~lvV~~T~eV--~pgL~vaGMa~~ 229 (262)
T COG1635 177 -DAEVVSFLAKRIPELGIEVPGEKSMWAERGEDLVVENTGEV--YPGLYVAGMAVN 229 (262)
T ss_pred -chHHHHHHHHhccccccccCCCcchhhhHHHHHHHhccccc--cCCeEeehhhHH
Confidence 3333233 3332 121 111 2334444443 899999996543
No 353
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.27 E-value=0.00027 Score=74.76 Aligned_cols=41 Identities=15% Similarity=0.207 Sum_probs=36.0
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccC
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT 96 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~ 96 (515)
...+||+|||||+.|+++|+.|+++|++|+|+|+.+...++
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~Gt 44 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGT 44 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCC
Confidence 34589999999999999999999999999999999655444
No 354
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.25 E-value=0.00044 Score=68.27 Aligned_cols=39 Identities=28% Similarity=0.323 Sum_probs=34.6
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccC
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT 96 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~ 96 (515)
+.+|||||||.+|+++|..|.+.|++|+|+|++......
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~ 40 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGE 40 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccC
Confidence 578999999999999999999999999999987655443
No 355
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.24 E-value=0.0045 Score=64.10 Aligned_cols=50 Identities=18% Similarity=0.316 Sum_probs=36.6
Q ss_pred HHHHHHHhhcCCeEEEcCcEEEEEe--CCeEEEEecCCCceEEEecCeEEEccCC
Q 010217 281 TAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 281 ~~~~~~~l~~~gV~v~~~~~v~~i~--~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
.+.+.+.+++.|++++.+++|+++. ++.+..+. .+|++ +.+|.||.|+|.
T Consensus 111 D~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~-~~g~~--i~A~~VI~A~G~ 162 (428)
T PRK10157 111 DAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVE-ADGDV--IEAKTVILADGV 162 (428)
T ss_pred HHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEE-cCCcE--EECCEEEEEeCC
Confidence 3445666677899999999999985 34444443 34553 899999999994
No 356
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.22 E-value=0.0032 Score=64.91 Aligned_cols=55 Identities=18% Similarity=0.149 Sum_probs=35.8
Q ss_pred HHHHHhhc-CCeEEEcCcEEEEEeC--CeEEEEecCCCceEEEecCeEEEccCCCCccch
Q 010217 283 FAEEKFSR-DGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAII 339 (515)
Q Consensus 283 ~~~~~l~~-~gV~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~ 339 (515)
.+.+.+.+ .||++++++++++++. +.+.+....+++..++.+|+||.|.|. ...+
T Consensus 126 ~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~--~S~v 183 (415)
T PRK07364 126 ALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGA--RSPI 183 (415)
T ss_pred HHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCC--Cchh
Confidence 33344444 3799999999999864 344443322343336999999999994 5444
No 357
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.21 E-value=0.0018 Score=65.62 Aligned_cols=93 Identities=24% Similarity=0.292 Sum_probs=61.9
Q ss_pred EEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccc---------cccHHHHHHH------------
Q 010217 226 FVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN---------MFDKRITAFA------------ 284 (515)
Q Consensus 226 vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~---------~~~~~~~~~~------------ 284 (515)
|+|||||+.|+.+|..|.+. +++.+|.++++.+.+.+ .+++.....+
T Consensus 2 viIvGaG~AGl~lA~~L~~~------------~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~ 69 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRA------------RPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYE 69 (370)
T ss_pred EEEECccHHHHHHHHHHHhc------------CCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCE
Confidence 79999999999999998863 13689999998774432 1111111101
Q ss_pred ----------------------HHH-hhcCCeEEEcCcEEEEEeCCeEEEEecCCCceEEEecCeEEEccCCCC
Q 010217 285 ----------------------EEK-FSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAP 335 (515)
Q Consensus 285 ----------------------~~~-l~~~gV~v~~~~~v~~i~~~~v~~~~~~~G~~~~i~~D~vi~a~G~~~ 335 (515)
.+. +++.+..++++++|.+++.+++++ .+|++ +.+|.||.|.|...
T Consensus 70 v~~~~~~~~l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~~v~l---~dg~~--~~A~~VI~A~G~~s 138 (370)
T TIGR01789 70 VRFPKYRRKLKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDADGVDL---APGTR--INARSVIDCRGFKP 138 (370)
T ss_pred EECcchhhhcCCCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCCEEEE---CCCCE--EEeeEEEECCCCCC
Confidence 111 222233467788999998777665 35764 99999999999643
No 358
>PRK06184 hypothetical protein; Provisional
Probab=97.20 E-value=0.0038 Score=66.18 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=36.6
Q ss_pred HHHHHHHhhcCCeEEEcCcEEEEEeC--CeEEEEe--cCCCceEEEecCeEEEccCC
Q 010217 281 TAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKV--RGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 281 ~~~~~~~l~~~gV~v~~~~~v~~i~~--~~v~~~~--~~~G~~~~i~~D~vi~a~G~ 333 (515)
.+.+.+.+.+.|+++++++++++++. +++++.. ..+++ ++.+|.||-|.|.
T Consensus 112 e~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~--~i~a~~vVgADG~ 166 (502)
T PRK06184 112 ERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEE--TVRARYLVGADGG 166 (502)
T ss_pred HHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeE--EEEeCEEEECCCC
Confidence 34556667778999999999999974 3444432 12333 5999999999994
No 359
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.18 E-value=0.0033 Score=64.53 Aligned_cols=52 Identities=13% Similarity=0.223 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhcCCeEEEcCcEEEEEeC--CeEEEEecCCCceEEEecCeEEEccCC
Q 010217 279 RITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 279 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
.+.+.+.+.+.+.||+++.++++++++. +.+.+. ..+|+. +.+|+||.|.|.
T Consensus 112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~-~~~g~~--~~ad~vI~AdG~ 165 (403)
T PRK07333 112 VLINALRKRAEALGIDLREATSVTDFETRDEGVTVT-LSDGSV--LEARLLVAADGA 165 (403)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEE-ECCCCE--EEeCEEEEcCCC
Confidence 3455566667778999999999999863 345444 356664 899999999994
No 360
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.16 E-value=0.0016 Score=63.52 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=33.4
Q ss_pred CCCCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCC
Q 010217 54 MGIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPR 90 (515)
Q Consensus 54 ~~~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~ 90 (515)
......||+|||||.+|-+.|+.|++.|.+|.|||+.
T Consensus 41 ~~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 41 RNDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred ccCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 3445689999999999999999999999999999976
No 361
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.16 E-value=0.015 Score=52.90 Aligned_cols=96 Identities=22% Similarity=0.222 Sum_probs=57.8
Q ss_pred ceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccccc-------c--------------------
Q 010217 224 LHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM-------F-------------------- 276 (515)
Q Consensus 224 ~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~-------~-------------------- 276 (515)
..|+|||+||+|+-+|..|++. +.+|.++++...+... |
T Consensus 18 ~DV~IVGaGpaGl~aA~~La~~--------------g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y 83 (230)
T PF01946_consen 18 YDVAIVGAGPAGLTAAYYLAKA--------------GLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPY 83 (230)
T ss_dssp ESEEEE--SHHHHHHHHHHHHH--------------TS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---
T ss_pred CCEEEECCChhHHHHHHHHHHC--------------CCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCcee
Confidence 4899999999999999999985 6899999887643210 0
Q ss_pred -----------cHHHHHHHHHHhhcCCeEEEcCcEEEEEe--C-CeEEEEec------CCC---ceEEEecCeEEEccCC
Q 010217 277 -----------DKRITAFAEEKFSRDGIDVKLGSMVVKVT--D-KEIFTKVR------GNG---ETSSMPYGMVVWSTGI 333 (515)
Q Consensus 277 -----------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~-~~v~~~~~------~~G---~~~~i~~D~vi~a~G~ 333 (515)
..++...+....-+.|++++..+.++.+- + +.+..+.. ..| ....+.+..||-|||.
T Consensus 84 ~~~~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGH 163 (230)
T PF01946_consen 84 EEYGDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGH 163 (230)
T ss_dssp EE-SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---S
T ss_pred EEeCCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCC
Confidence 01122223333445899999999998873 4 34332221 122 2346999999999994
No 362
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.15 E-value=0.0042 Score=63.64 Aligned_cols=47 Identities=11% Similarity=0.123 Sum_probs=33.8
Q ss_pred HHHHhhcC-CeEEEcCcEEEEEeC--CeEEEEecCCCceEEEecCeEEEccCC
Q 010217 284 AEEKFSRD-GIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 284 ~~~~l~~~-gV~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
+.+.+.+. +|+++.++.+++++. +++.+.. .+|++ +.+|.||.|.|.
T Consensus 115 L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~-~~g~~--~~ad~vV~AdG~ 164 (396)
T PRK08163 115 LLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFD-QQGNR--WTGDALIGCDGV 164 (396)
T ss_pred HHHHHHhcCCcEEEeCCEEEEEecCCCceEEEE-cCCCE--EecCEEEECCCc
Confidence 34444444 599999999999974 3455543 56664 899999999994
No 363
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.15 E-value=0.0036 Score=71.58 Aligned_cols=98 Identities=13% Similarity=0.127 Sum_probs=66.4
Q ss_pred cceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccccc-----------cHHHHHHHHHHhhcC
Q 010217 223 ILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMF-----------DKRITAFAEEKFSRD 291 (515)
Q Consensus 223 ~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~~-----------~~~~~~~~~~~l~~~ 291 (515)
...|+|||||+.|+..|..+.+. +.+|+|++..+.+...+ ..+....+.+.+++.
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~--------------G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~ 228 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARA--------------GARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAM 228 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhC--------------CCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcC
Confidence 46899999999999999999874 78999999876553211 122323344555555
Q ss_pred -CeEEEcCcEEEEEeCCe-EEEEe-c-------CC----CceEEEecCeEEEccCCC
Q 010217 292 -GIDVKLGSMVVKVTDKE-IFTKV-R-------GN----GETSSMPYGMVVWSTGIA 334 (515)
Q Consensus 292 -gV~v~~~~~v~~i~~~~-v~~~~-~-------~~----G~~~~i~~D~vi~a~G~~ 334 (515)
+|+++.++.|..+..+. +.... . .+ +...++.+|.||+|||..
T Consensus 229 ~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~ 285 (985)
T TIGR01372 229 PEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAH 285 (985)
T ss_pred CCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCC
Confidence 59999999998886532 21111 0 01 112258999999999953
No 364
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.14 E-value=0.00045 Score=69.30 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=35.0
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCC-CeEEEEcCCCCCccC
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPS-YDVQVISPRNYFAFT 96 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g-~~V~vie~~~~~~~~ 96 (515)
...+|||||||.|||+||.+|...| .+++|+|..+.+|+.
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGR 60 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGR 60 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCce
Confidence 3459999999999999999999555 579999999999886
No 365
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.12 E-value=0.0052 Score=62.93 Aligned_cols=57 Identities=12% Similarity=0.201 Sum_probs=39.0
Q ss_pred HHHHHhhcCCeEEEcCcEEEEEeC---CeEEEEecCCCceEEEecCeEEEccCCCCccchHH
Q 010217 283 FAEEKFSRDGIDVKLGSMVVKVTD---KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKD 341 (515)
Q Consensus 283 ~~~~~l~~~gV~v~~~~~v~~i~~---~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~ 341 (515)
.+.+...+.|+++++++++++++. +.+.+....+|+..++.+|+||-|-|. +..+..
T Consensus 108 ~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~--~S~vR~ 167 (392)
T PRK08243 108 DLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGF--HGVSRA 167 (392)
T ss_pred HHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCC--CCchhh
Confidence 344444667999999999998864 233333224676667999999999994 544543
No 366
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.12 E-value=0.0052 Score=65.69 Aligned_cols=59 Identities=17% Similarity=0.336 Sum_probs=40.2
Q ss_pred HHHHHHHhhc-CCeEEEcCcEEEEEeC--CeEEEEec-CCCceEEEecCeEEEccCCCCccchHH
Q 010217 281 TAFAEEKFSR-DGIDVKLGSMVVKVTD--KEIFTKVR-GNGETSSMPYGMVVWSTGIAPHAIIKD 341 (515)
Q Consensus 281 ~~~~~~~l~~-~gV~v~~~~~v~~i~~--~~v~~~~~-~~G~~~~i~~D~vi~a~G~~~~p~~~~ 341 (515)
.+.+.+.+.+ .||+++.++++++++. +++++... .+|+..++.+|.||-|.|. +..+..
T Consensus 116 e~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~--~S~vR~ 178 (538)
T PRK06183 116 EAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGA--NSFVRR 178 (538)
T ss_pred HHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCC--chhHHH
Confidence 3444455555 4999999999999974 45554432 2575557999999999994 544433
No 367
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.11 E-value=0.0057 Score=62.63 Aligned_cols=55 Identities=9% Similarity=0.209 Sum_probs=39.5
Q ss_pred HHHHHHHHhhcCCeEEEcCcEEEEEeC--CeEEEEecCCCceEEEecCeEEEccCCCCccch
Q 010217 280 ITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAII 339 (515)
Q Consensus 280 ~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~ 339 (515)
+.+.+.+.+++.||+++.++++++++. +++.+. ..+|++ +.+|.||.|.|. .+.+
T Consensus 115 l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~-~~~g~~--~~a~~vV~AdG~--~S~v 171 (392)
T PRK08773 115 LVDRLWAALHAAGVQLHCPARVVALEQDADRVRLR-LDDGRR--LEAALAIAADGA--ASTL 171 (392)
T ss_pred HHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEE-ECCCCE--EEeCEEEEecCC--CchH
Confidence 344455666778999999999999864 345543 355664 899999999994 4444
No 368
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.11 E-value=0.00044 Score=74.43 Aligned_cols=37 Identities=27% Similarity=0.257 Sum_probs=33.2
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCc
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFA 94 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~ 94 (515)
+.||||||+|.||++||..+++.|.+|+|||+....+
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~ 39 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKR 39 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 4599999999999999999999999999999876543
No 369
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.09 E-value=0.03 Score=53.99 Aligned_cols=39 Identities=23% Similarity=0.326 Sum_probs=33.3
Q ss_pred CCCeEEEECCcHHHHHHHHhcc----CCCCeEEEEcCCCCCcc
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLN----NPSYDVQVISPRNYFAF 95 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~----~~g~~V~vie~~~~~~~ 95 (515)
...+|||||||-.|.+.|++|. +.|++|+|+|+++.+.-
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytq 127 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQ 127 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccc
Confidence 3579999999999999999997 56799999999865543
No 370
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.09 E-value=0.0043 Score=63.80 Aligned_cols=54 Identities=11% Similarity=0.216 Sum_probs=38.0
Q ss_pred HHHHHhhcCCeEEEcCcEEEEEeC--CeEEEEecCCCceEEEecCeEEEccCCCCccchHH
Q 010217 283 FAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKD 341 (515)
Q Consensus 283 ~~~~~l~~~gV~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~ 341 (515)
.+.+.+++.|++++.++++.+++. +++.+. ..+|++ +.+|+||.|.|. ...+..
T Consensus 117 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~-~~~g~~--~~a~~vVgAdG~--~S~vR~ 172 (405)
T PRK05714 117 ALLERLHDSDIGLLANARLEQMRRSGDDWLLT-LADGRQ--LRAPLVVAADGA--NSAVRR 172 (405)
T ss_pred HHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEE-ECCCCE--EEeCEEEEecCC--CchhHH
Confidence 344555667999999999999864 345544 356764 899999999994 444433
No 371
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.08 E-value=0.00054 Score=65.27 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=36.8
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCC
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~ 97 (515)
+.|++|||+|.+|+.+|..|+..|.+|.|||+++++|+.+
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNa 40 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNA 40 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcc
Confidence 3689999999999999998889999999999999999863
No 372
>PLN02697 lycopene epsilon cyclase
Probab=97.07 E-value=0.0053 Score=64.77 Aligned_cols=94 Identities=21% Similarity=0.372 Sum_probs=62.8
Q ss_pred ceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccccc----------------------------
Q 010217 224 LHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM---------------------------- 275 (515)
Q Consensus 224 ~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~---------------------------- 275 (515)
-.|+|||||+.|+-+|..+++. |.+|.++++...+.+.
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~--------------Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~ 174 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKL--------------GLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYL 174 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhC--------------CCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEe
Confidence 4899999999999999998874 5666666543211100
Q ss_pred --------------cc-HHHHHHHHHHhhcCCeEEEcCcEEEEEeC--CeEEEEecCCCceEEEecCeEEEccCCC
Q 010217 276 --------------FD-KRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIA 334 (515)
Q Consensus 276 --------------~~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~~ 334 (515)
++ ..+.+.+.+.+.+.|+++ .++.|+++.. +++.++...+|.+ +.++.||.|+|..
T Consensus 175 ~~~~~~~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~--i~A~lVI~AdG~~ 247 (529)
T PLN02697 175 DDDKPIMIGRAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRV--IPCRLATVASGAA 247 (529)
T ss_pred cCCceeeccCcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcE--EECCEEEECCCcC
Confidence 01 123344555566779998 5678888863 4444333355654 9999999999953
No 373
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.07 E-value=0.0055 Score=62.54 Aligned_cols=49 Identities=8% Similarity=0.005 Sum_probs=34.5
Q ss_pred HHHHHHHhhcCC-eEEEcCcEEEEEeC--CeEEEEecCCCceEEEecCeEEEccCC
Q 010217 281 TAFAEEKFSRDG-IDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 281 ~~~~~~~l~~~g-V~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
.+.+.+.+++.| |+++ ++.+++++. +.+.+.. .+|+ ++.+|.||.|.|.
T Consensus 114 ~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~-~~g~--~~~a~~vI~adG~ 165 (388)
T PRK07608 114 ERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTL-ADGQ--VLRADLVVGADGA 165 (388)
T ss_pred HHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEE-CCCC--EEEeeEEEEeCCC
Confidence 344555566666 9998 888998853 4455443 4565 3899999999994
No 374
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.06 E-value=0.0018 Score=61.71 Aligned_cols=36 Identities=28% Similarity=0.261 Sum_probs=32.1
Q ss_pred eEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCcc
Q 010217 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAF 95 (515)
Q Consensus 60 ~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~ 95 (515)
-|||||+|.|||+|+..+...+-.|+|+|+...+++
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GG 46 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGG 46 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCC
Confidence 599999999999999999988888999998866655
No 375
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.04 E-value=0.00059 Score=72.32 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=35.2
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCC
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~ 97 (515)
..||||||+| ||++||..+++.|.+|+|||+.+..++..
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t 45 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTT 45 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcce
Confidence 5799999999 99999999999999999999988766543
No 376
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.04 E-value=0.0005 Score=69.97 Aligned_cols=35 Identities=26% Similarity=0.234 Sum_probs=32.0
Q ss_pred CeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCC
Q 010217 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYF 93 (515)
Q Consensus 59 ~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~ 93 (515)
.+|+|||||.||+.||..|++.|++|+|||+++..
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 37999999999999999999999999999987653
No 377
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.01 E-value=0.00064 Score=72.73 Aligned_cols=40 Identities=23% Similarity=0.324 Sum_probs=35.6
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCC--CCccC
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN--YFAFT 96 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~--~~~~~ 96 (515)
...||||||+|.|||+||..+++.|.+|+|||+.+ ..++.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~ 44 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQ 44 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCc
Confidence 35799999999999999999999999999999998 55554
No 378
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.01 E-value=0.0013 Score=70.61 Aligned_cols=88 Identities=20% Similarity=0.347 Sum_probs=63.2
Q ss_pred hccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccc---------cccHHHHHHHHHHhhcC
Q 010217 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN---------MFDKRITAFAEEKFSRD 291 (515)
Q Consensus 221 ~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~---------~~~~~~~~~~~~~l~~~ 291 (515)
..+++|+|||+|++|+.+|..|.+. |.+|+++++.+.+.. .++.++.+.-.+.+++.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~--------------G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~ 200 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRM--------------GHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDL 200 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--------------CCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHC
Confidence 4678999999999999999999875 678999998765421 23444555555667789
Q ss_pred CeEEEcCcEE-EEEeCCeEEEEecCCCceEEEecCeEEEccCC
Q 010217 292 GIDVKLGSMV-VKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 292 gV~v~~~~~v-~~i~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
|++++.++.+ ..+..+. . ...+|.||+|+|.
T Consensus 201 Gv~~~~~~~~~~~~~~~~---------~--~~~~D~Vi~AtG~ 232 (564)
T PRK12771 201 GVEVRLGVRVGEDITLEQ---------L--EGEFDAVFVAIGA 232 (564)
T ss_pred CCEEEeCCEECCcCCHHH---------H--HhhCCEEEEeeCC
Confidence 9999988765 3221110 0 1348999999995
No 379
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.00 E-value=0.00083 Score=69.30 Aligned_cols=40 Identities=20% Similarity=0.207 Sum_probs=37.8
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCC
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~ 97 (515)
.+||||||+|.+|+.+|..|++.|.+|+++|+++++|+..
T Consensus 4 ~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~ 43 (443)
T PTZ00363 4 TYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGES 43 (443)
T ss_pred cceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCccc
Confidence 5899999999999999999999999999999999998864
No 380
>PRK09897 hypothetical protein; Provisional
Probab=97.00 E-value=0.0067 Score=64.04 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=30.2
Q ss_pred hcCC--eEEEcCcEEEEEeC--CeEEEEecCCCceEEEecCeEEEccCC
Q 010217 289 SRDG--IDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 289 ~~~g--V~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
.+.| |.++.+++|+.++. +++.+....+|. .+.+|.||+|+|.
T Consensus 118 ~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~--~i~aD~VVLAtGh 164 (534)
T PRK09897 118 RQQKFAVAVYESCQVTDLQITNAGVMLATNQDLP--SETFDLAVIATGH 164 (534)
T ss_pred HHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCe--EEEcCEEEECCCC
Confidence 3455 78888999999964 345554323334 3899999999995
No 381
>PRK07190 hypothetical protein; Provisional
Probab=96.99 E-value=0.0086 Score=63.01 Aligned_cols=50 Identities=24% Similarity=0.361 Sum_probs=37.4
Q ss_pred HHHHHHHhhcCCeEEEcCcEEEEEeC--CeEEEEecCCCceEEEecCeEEEccCC
Q 010217 281 TAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 281 ~~~~~~~l~~~gV~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
...+.+.+++.||+++.+++++.++. +++.+.. .+|+ ++.|+.||.|.|.
T Consensus 112 e~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~-~~g~--~v~a~~vVgADG~ 163 (487)
T PRK07190 112 EKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTL-SNGE--RIQSRYVIGADGS 163 (487)
T ss_pred HHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEE-CCCc--EEEeCEEEECCCC
Confidence 34455667778999999999999963 4455443 4565 4999999999993
No 382
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=96.99 E-value=0.0026 Score=66.00 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=28.3
Q ss_pred EECCcHHHHHHHHhccCCCCeEEEEcCCCC
Q 010217 63 VLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (515)
Q Consensus 63 IIGgG~AGlsaA~~L~~~g~~V~vie~~~~ 92 (515)
|||+|.||++||..+++.|.+|+|+|+.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 799999999999999999999999999864
No 383
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.98 E-value=0.00083 Score=71.77 Aligned_cols=44 Identities=14% Similarity=0.230 Sum_probs=38.9
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccc
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLP 100 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~ 100 (515)
....||||||+| +|++||..++..|.+|+|||+.+.++++..+.
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~~ 57 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTARS 57 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccCc
Confidence 447899999999 89999999999999999999998888875444
No 384
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.00082 Score=67.14 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=31.7
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCC
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPR 90 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~ 90 (515)
...++|||||||.||..||...++.|.+.+|+..+
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 45789999999999999999999999999998755
No 385
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=96.97 E-value=0.008 Score=61.41 Aligned_cols=98 Identities=22% Similarity=0.385 Sum_probs=69.0
Q ss_pred eEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccc-ccccc-----c----------------------
Q 010217 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAAD-HILNM-----F---------------------- 276 (515)
Q Consensus 225 ~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~-~~l~~-----~---------------------- 276 (515)
.|+|||||++|+-+|..|.+. |.+|+|+++.+ .+.+. +
T Consensus 4 dV~IvGaG~aGl~lA~~L~~~--------------G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~ 69 (387)
T COG0654 4 DVAIVGAGPAGLALALALARA--------------GLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGV 69 (387)
T ss_pred CEEEECCCHHHHHHHHHHHhC--------------CCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccC
Confidence 899999999999999999985 67888887762 11100 0
Q ss_pred ---------------------------------cHHHHHHHHHHhhcCC-eEEEcCcEEEEEeCC--eEEEEecC-CCce
Q 010217 277 ---------------------------------DKRITAFAEEKFSRDG-IDVKLGSMVVKVTDK--EIFTKVRG-NGET 319 (515)
Q Consensus 277 ---------------------------------~~~~~~~~~~~l~~~g-V~v~~~~~v~~i~~~--~v~~~~~~-~G~~ 319 (515)
...+.+.+.+.+.+.+ |+++.++.|+.++.+ .+.+. +. +|+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~-l~~dG~- 147 (387)
T COG0654 70 PPLHVMVVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVT-LSFDGE- 147 (387)
T ss_pred CceeeEEEecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEE-EcCCCc-
Confidence 0123344455555554 999999999999743 45533 34 787
Q ss_pred EEEecCeEEEccCCCCccchHH
Q 010217 320 SSMPYGMVVWSTGIAPHAIIKD 341 (515)
Q Consensus 320 ~~i~~D~vi~a~G~~~~p~~~~ 341 (515)
++.||+||-|-| .+..+..
T Consensus 148 -~~~a~llVgADG--~~S~vR~ 166 (387)
T COG0654 148 -TLDADLLVGADG--ANSAVRR 166 (387)
T ss_pred -EEecCEEEECCC--CchHHHH
Confidence 499999999999 4554443
No 386
>PRK13984 putative oxidoreductase; Provisional
Probab=96.96 E-value=0.0017 Score=70.35 Aligned_cols=89 Identities=22% Similarity=0.213 Sum_probs=65.3
Q ss_pred hccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccc-------c--cccHHHHHHHHHHhhcC
Q 010217 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-------N--MFDKRITAFAEEKFSRD 291 (515)
Q Consensus 221 ~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l-------~--~~~~~~~~~~~~~l~~~ 291 (515)
.++++|+|||+|+.|+.+|..|.+. +.+|+++++.+.+. + .++.++.....+.+++.
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~--------------G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~ 346 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATM--------------GYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEAL 346 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHC--------------CCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHC
Confidence 3678999999999999999999885 68999998877542 1 13345555556778889
Q ss_pred CeEEEcCcEEEEEeCCeEEEEecCCCceEEEecCeEEEccCC
Q 010217 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 292 gV~v~~~~~v~~i~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
||+++.++.+.. .+.. .+. ...+|.||+|+|.
T Consensus 347 gv~~~~~~~v~~----~~~~---~~~---~~~yD~vilAtGa 378 (604)
T PRK13984 347 GVKIHLNTRVGK----DIPL---EEL---REKHDAVFLSTGF 378 (604)
T ss_pred CcEEECCCEeCC----cCCH---HHH---HhcCCEEEEEcCc
Confidence 999999987732 1111 111 2579999999995
No 387
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.96 E-value=0.00083 Score=72.19 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=36.3
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccC
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT 96 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~ 96 (515)
...||||||+|.|||+||+.+++.|.+|+|+|+.+..++.
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~ 49 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS 49 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence 4679999999999999999999999999999999876664
No 388
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=96.95 E-value=0.0093 Score=63.95 Aligned_cols=56 Identities=14% Similarity=0.265 Sum_probs=37.0
Q ss_pred HHHHHHhhc-CCeEEEcCcEEEEEeC--CeEEEEe-cCCCceEEEecCeEEEccCCCCccchH
Q 010217 282 AFAEEKFSR-DGIDVKLGSMVVKVTD--KEIFTKV-RGNGETSSMPYGMVVWSTGIAPHAIIK 340 (515)
Q Consensus 282 ~~~~~~l~~-~gV~v~~~~~v~~i~~--~~v~~~~-~~~G~~~~i~~D~vi~a~G~~~~p~~~ 340 (515)
+.+.+.+.+ .+|++++++++++++. +++.+.. ..+|+ .++.+|.||.|.| .+..+.
T Consensus 129 ~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~-~~i~ad~vVgADG--~~S~vR 188 (547)
T PRK08132 129 GYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGP-YTLEADWVIACDG--ARSPLR 188 (547)
T ss_pred HHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCc-EEEEeCEEEECCC--CCcHHH
Confidence 344455555 4799999999999974 3444332 12343 3589999999999 455443
No 389
>PRK06126 hypothetical protein; Provisional
Probab=96.94 E-value=0.0083 Score=64.29 Aligned_cols=51 Identities=14% Similarity=0.234 Sum_probs=36.3
Q ss_pred HHHHHhhc-CCeEEEcCcEEEEEeC--CeEE--EEecCCCceEEEecCeEEEccCC
Q 010217 283 FAEEKFSR-DGIDVKLGSMVVKVTD--KEIF--TKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 283 ~~~~~l~~-~gV~v~~~~~v~~i~~--~~v~--~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
.+.+.+++ .||++++++++++++. ++++ +.+..+|+..++.+|.||.|.|.
T Consensus 131 ~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~ 186 (545)
T PRK06126 131 ILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGA 186 (545)
T ss_pred HHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCc
Confidence 34444443 5899999999999974 3343 33334576567999999999994
No 390
>PRK11445 putative oxidoreductase; Provisional
Probab=96.93 E-value=0.014 Score=58.71 Aligned_cols=44 Identities=16% Similarity=0.185 Sum_probs=32.8
Q ss_pred cCCeEEEcCcEEEEEeC--CeEEEEecCCCceEEEecCeEEEccCC
Q 010217 290 RDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 290 ~~gV~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
..||+++.++.++.++. +++.+....+|+..++.+|.||.|.|.
T Consensus 110 ~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~ 155 (351)
T PRK11445 110 PASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGA 155 (351)
T ss_pred hcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCC
Confidence 46899999999998863 444444334665446999999999994
No 391
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.90 E-value=0.0019 Score=71.51 Aligned_cols=35 Identities=17% Similarity=0.316 Sum_probs=31.7
Q ss_pred hccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecc
Q 010217 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAA 269 (515)
Q Consensus 221 ~~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~ 269 (515)
..+++|+|||+||.|+.+|..|... |.+|+++++.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~--------------Gh~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRS--------------GHNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhC--------------CCeEEEEccc
Confidence 4789999999999999999999974 7999999975
No 392
>PRK05868 hypothetical protein; Validated
Probab=96.90 E-value=0.011 Score=60.02 Aligned_cols=48 Identities=8% Similarity=0.296 Sum_probs=35.3
Q ss_pred cCCeEEEcCcEEEEEeC--CeEEEEecCCCceEEEecCeEEEccCCCCccchHHH
Q 010217 290 RDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDF 342 (515)
Q Consensus 290 ~~gV~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l 342 (515)
..|++++++++++.++. +++++. ..+|++ +.+|+||-|-|. +..+...
T Consensus 116 ~~~v~i~~~~~v~~i~~~~~~v~v~-~~dg~~--~~adlvIgADG~--~S~vR~~ 165 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDDGDSVRVT-FERAAA--REFDLVIGADGL--HSNVRRL 165 (372)
T ss_pred cCCcEEEeCCEEEEEEecCCeEEEE-ECCCCe--EEeCEEEECCCC--CchHHHH
Confidence 36899999999999863 445554 366764 889999999994 5555443
No 393
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.90 E-value=0.00086 Score=71.74 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=36.3
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCC
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~ 97 (515)
..||||||+|.||++||..+++.|.+|+|||+....+++.
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~ 45 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGST 45 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence 5799999999999999999999999999999987766653
No 394
>PLN03000 amine oxidase
Probab=96.89 E-value=0.00095 Score=73.27 Aligned_cols=41 Identities=24% Similarity=0.338 Sum_probs=38.0
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCC
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~ 97 (515)
..++|+|||||++|++||..|.+.|++|+|+|+++..|+..
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi 223 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRV 223 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCc
Confidence 46899999999999999999999999999999999988864
No 395
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=96.89 E-value=0.0075 Score=64.05 Aligned_cols=91 Identities=24% Similarity=0.282 Sum_probs=60.4
Q ss_pred eEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccc-ccc-----------------------c------
Q 010217 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAAD-HIL-----------------------N------ 274 (515)
Q Consensus 225 ~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~-~~l-----------------------~------ 274 (515)
.|+|||||+.|+++|..+++. |.+|.++++.. .+. .
T Consensus 6 DVIVVGGGpAG~eAA~~aAR~--------------G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~ 71 (618)
T PRK05192 6 DVIVVGGGHAGCEAALAAARM--------------GAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKA 71 (618)
T ss_pred eEEEECchHHHHHHHHHHHHc--------------CCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHH
Confidence 799999999999999999985 67888887762 110 0
Q ss_pred ------------------------cccH-HHHHHHHHHhhc-CCeEEEcCcEEEEEe--CCeEEEEecCCCceEEEecCe
Q 010217 275 ------------------------MFDK-RITAFAEEKFSR-DGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGM 326 (515)
Q Consensus 275 ------------------------~~~~-~~~~~~~~~l~~-~gV~v~~~~~v~~i~--~~~v~~~~~~~G~~~~i~~D~ 326 (515)
.+|. .....+.+.+.+ .|++++ ...+.++. ++.+..+.+.+|.. +.|+.
T Consensus 72 ~d~~giq~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~dG~~--I~Ak~ 148 (618)
T PRK05192 72 IDKTGIQFRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQDGLE--FRAKA 148 (618)
T ss_pred HhhccCceeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEECCCCE--EECCE
Confidence 0010 012233344443 488876 45577663 45565555567764 99999
Q ss_pred EEEccC
Q 010217 327 VVWSTG 332 (515)
Q Consensus 327 vi~a~G 332 (515)
||+|+|
T Consensus 149 VIlATG 154 (618)
T PRK05192 149 VVLTTG 154 (618)
T ss_pred EEEeeC
Confidence 999999
No 396
>PRK09126 hypothetical protein; Provisional
Probab=96.89 E-value=0.0098 Score=60.81 Aligned_cols=47 Identities=19% Similarity=0.296 Sum_probs=34.2
Q ss_pred hcCCeEEEcCcEEEEEeC--CeEEEEecCCCceEEEecCeEEEccCCCCccchH
Q 010217 289 SRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIK 340 (515)
Q Consensus 289 ~~~gV~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~ 340 (515)
+..|++++.++++++++. +.+.+. .++|++ +.+|+||.|.|. ...+.
T Consensus 122 ~~~g~~i~~~~~v~~~~~~~~~~~v~-~~~g~~--~~a~~vI~AdG~--~S~vr 170 (392)
T PRK09126 122 QQDGIELLTGTRVTAVRTDDDGAQVT-LANGRR--LTARLLVAADSR--FSATR 170 (392)
T ss_pred hCCCcEEEcCCeEEEEEEcCCeEEEE-EcCCCE--EEeCEEEEeCCC--Cchhh
Confidence 346999999999999863 344443 356764 999999999994 55443
No 397
>PRK07588 hypothetical protein; Provisional
Probab=96.88 E-value=0.013 Score=59.93 Aligned_cols=46 Identities=9% Similarity=0.325 Sum_probs=34.1
Q ss_pred CCeEEEcCcEEEEEeC--CeEEEEecCCCceEEEecCeEEEccCCCCccchHH
Q 010217 291 DGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKD 341 (515)
Q Consensus 291 ~gV~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~ 341 (515)
.++++++++++++++. +++.+. .++|+. +.+|+||-|.|. +..+..
T Consensus 115 ~~v~i~~~~~v~~i~~~~~~v~v~-~~~g~~--~~~d~vIgADG~--~S~vR~ 162 (391)
T PRK07588 115 GQVETIFDDSIATIDEHRDGVRVT-FERGTP--RDFDLVIGADGL--HSHVRR 162 (391)
T ss_pred cCeEEEeCCEEeEEEECCCeEEEE-ECCCCE--EEeCEEEECCCC--Cccchh
Confidence 4799999999999974 445544 357775 789999999994 444433
No 398
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=96.87 E-value=0.0054 Score=63.63 Aligned_cols=136 Identities=19% Similarity=0.319 Sum_probs=80.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcE-EEEEecccccc----------------------cc--c--
Q 010217 224 LHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVK-ITLLEAADHIL----------------------NM--F-- 276 (515)
Q Consensus 224 ~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~-Vtlv~~~~~~l----------------------~~--~-- 276 (515)
.+|+|||+|++|+-+|..|.+.+ .. +.++++++.+. +. +
T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~g--------------~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~ 74 (443)
T COG2072 9 TDVAIIGAGQSGLAAAYALKQAG--------------VPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRW 74 (443)
T ss_pred ccEEEECCCHHHHHHHHHHHHcC--------------CCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCC
Confidence 48999999999999999999864 44 77777765321 00 1
Q ss_pred ----c--HHHHHHHHHHhhcCCeEE--EcCcEEEEEe--CC-eEEEEecCCCceEEEecCeEEEccCCCCccchHHHHHH
Q 010217 277 ----D--KRITAFAEEKFSRDGIDV--KLGSMVVKVT--DK-EIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQ 345 (515)
Q Consensus 277 ----~--~~~~~~~~~~l~~~gV~v--~~~~~v~~i~--~~-~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~ 345 (515)
+ ..+.+++...+++.++.. ..++.|..+. .+ ....+..++|...++.+|.||+|||.-..|++..+
T Consensus 75 ~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~--- 151 (443)
T COG2072 75 DEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDF--- 151 (443)
T ss_pred cccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCC---
Confidence 0 126677777777665443 3334444443 32 34444444555433779999999997667766443
Q ss_pred hCCC-CCCceeeCCCccc---cCCCCEEEeccccc
Q 010217 346 VGQT-NRRALATDEWLRV---EGSDSIYALGDCAT 376 (515)
Q Consensus 346 ~~~~-~~g~i~vd~~l~t---~~~~~IyA~GD~~~ 376 (515)
.|++ -.|.+.=-.+..- ..-++|-+||--++
T Consensus 152 ~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaS 186 (443)
T COG2072 152 AGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGAS 186 (443)
T ss_pred CCccCCCceEEchhcCCCccccCCCeEEEECCCcc
Confidence 2332 2344332111110 12357888886655
No 399
>PRK07395 L-aspartate oxidase; Provisional
Probab=96.85 E-value=0.0013 Score=70.16 Aligned_cols=39 Identities=23% Similarity=0.198 Sum_probs=33.3
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCcc
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAF 95 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~ 95 (515)
....||||||+|.||++||..++ .|.+|+|||+.+..++
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg 45 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTS 45 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCC
Confidence 34579999999999999999996 5999999999876444
No 400
>PRK12839 hypothetical protein; Provisional
Probab=96.85 E-value=0.0011 Score=70.89 Aligned_cols=42 Identities=21% Similarity=0.159 Sum_probs=37.4
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCC
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~ 97 (515)
....||+|||+|.+|++||..+++.|.+|+|||+...+++..
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~ 47 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGAT 47 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 346899999999999999999999999999999988777654
No 401
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=96.85 E-value=0.016 Score=60.55 Aligned_cols=82 Identities=17% Similarity=0.153 Sum_probs=57.6
Q ss_pred HHHhhCcccC-CCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEe--CCeEEEEecCCCceEEEecC
Q 010217 249 DLFKLYPKVK-DSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYG 325 (515)
Q Consensus 249 ~~~~~~p~~~-~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~~~v~~~~~~~G~~~~i~~D 325 (515)
+..+.||-+. ++..-.++.+.+..+. +..+-..+....++.|+.|+.++.|++|. .++...+.+.-|. |++.
T Consensus 159 e~~~~~pLLn~d~v~g~Ly~P~DG~~D--P~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G~---iet~ 233 (856)
T KOG2844|consen 159 ETQELFPLLNVDDVYGGLYSPGDGVMD--PAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHGS---IETE 233 (856)
T ss_pred HHHHhCcccchhHheeeeecCCCcccC--HHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCcc---eecc
Confidence 3445566542 3455677777775442 23456677788889999999999999986 3444455555676 9999
Q ss_pred eEEEccCCCC
Q 010217 326 MVVWSTGIAP 335 (515)
Q Consensus 326 ~vi~a~G~~~ 335 (515)
.+|-|+|+..
T Consensus 234 ~~VNaaGvWA 243 (856)
T KOG2844|consen 234 CVVNAAGVWA 243 (856)
T ss_pred eEEechhHHH
Confidence 9999999744
No 402
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=96.84 E-value=0.011 Score=60.33 Aligned_cols=50 Identities=8% Similarity=0.132 Sum_probs=36.1
Q ss_pred HHHHHHHhhc-CCeEEEcCcEEEEEeC--CeEEEEecCCCceEEEecCeEEEccCC
Q 010217 281 TAFAEEKFSR-DGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 281 ~~~~~~~l~~-~gV~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
.+.+.+.+.+ .|++++.+++++++.. +++++.. .+|+. +.+|.||.|.|.
T Consensus 108 ~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~-~~g~~--~~ad~vV~AdG~ 160 (382)
T TIGR01984 108 GQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTL-DNGQQ--LRAKLLIAADGA 160 (382)
T ss_pred HHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEE-CCCCE--EEeeEEEEecCC
Confidence 3444455555 4999999999999863 4555543 56664 899999999994
No 403
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=96.84 E-value=0.0011 Score=65.64 Aligned_cols=42 Identities=17% Similarity=0.152 Sum_probs=35.7
Q ss_pred CCCCCeEEEECCcHHHHHHHHhccCCCCe--EEEEcCCCCCccC
Q 010217 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYD--VQVISPRNYFAFT 96 (515)
Q Consensus 55 ~~~~~~VvIIGgG~AGlsaA~~L~~~g~~--V~vie~~~~~~~~ 96 (515)
....++|+|+|||.+||++|++|++.+.+ |+|+|+.+..|+.
T Consensus 8 ~~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGw 51 (491)
T KOG1276|consen 8 AVSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGW 51 (491)
T ss_pred ceecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccce
Confidence 35578999999999999999999976655 6779999988874
No 404
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=96.83 E-value=0.0071 Score=62.04 Aligned_cols=66 Identities=12% Similarity=0.143 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhcCCeEEEcCcEEEEEeCC--eEEEEecCCCceEEEecCeEEEccCCCCccc------hHHHHHHhCC
Q 010217 279 RITAFAEEKFSRDGIDVKLGSMVVKVTDK--EIFTKVRGNGETSSMPYGMVVWSTGIAPHAI------IKDFMKQVGQ 348 (515)
Q Consensus 279 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~------~~~l~~~~~~ 348 (515)
.+.+.+.+.+++.||++++++.++++..+ .+.+.. +++ ++.+|.||+|+|....|. ...++.++|.
T Consensus 106 ~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~--~~~--~i~ad~VIlAtG~~s~p~~gs~G~g~~la~~lG~ 179 (400)
T TIGR00275 106 DVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET--SGG--EYEADKVILATGGLSYPQLGSTGDGYEIAESLGH 179 (400)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE--CCc--EEEcCEEEECCCCcccCCCCCCcHHHHHHHHCCC
Confidence 34455566677789999999999998642 233332 344 389999999999533332 2245666654
No 405
>PRK07045 putative monooxygenase; Reviewed
Probab=96.82 E-value=0.017 Score=59.03 Aligned_cols=58 Identities=12% Similarity=0.308 Sum_probs=38.6
Q ss_pred HHHHHHHHhh-cCCeEEEcCcEEEEEeC--Ce-EEEEecCCCceEEEecCeEEEccCCCCccchHH
Q 010217 280 ITAFAEEKFS-RDGIDVKLGSMVVKVTD--KE-IFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKD 341 (515)
Q Consensus 280 ~~~~~~~~l~-~~gV~v~~~~~v~~i~~--~~-v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~ 341 (515)
+.+.+.+.+. ..|++++++++++.++. ++ +..+...+|++ +.+|+||-|.| .+..+..
T Consensus 108 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~--~~~~~vIgADG--~~S~vR~ 169 (388)
T PRK07045 108 LRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGER--VAPTVLVGADG--ARSMIRD 169 (388)
T ss_pred HHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCE--EECCEEEECCC--CChHHHH
Confidence 3344444443 45899999999999964 33 22233456764 89999999999 4554544
No 406
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=96.81 E-value=0.001 Score=65.17 Aligned_cols=67 Identities=10% Similarity=0.150 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhcCCeEEEcCcEEEEE--e--CC---eEEEEecCCC-ceEEEecCeEEEccCCCCccchHHHHHHhCC
Q 010217 279 RITAFAEEKFSRDGIDVKLGSMVVKV--T--DK---EIFTKVRGNG-ETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ 348 (515)
Q Consensus 279 ~~~~~~~~~l~~~gV~v~~~~~v~~i--~--~~---~v~~~~~~~G-~~~~i~~D~vi~a~G~~~~p~~~~l~~~~~~ 348 (515)
....++...+.+.|++|++++.|++| + +. +|.+.+.... ....+.++.||+|.| .-++..|+...|+
T Consensus 194 ~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAG---ai~Tp~LLl~SGi 268 (296)
T PF00732_consen 194 AATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAG---AIGTPRLLLRSGI 268 (296)
T ss_dssp HHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SH---HHHHHHHHHHTTE
T ss_pred hhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccC---CCCChhhhccccc
Confidence 34566777777779999999999999 4 22 3556553333 244678899999999 3334466666665
No 407
>PRK06753 hypothetical protein; Provisional
Probab=96.78 E-value=0.01 Score=60.29 Aligned_cols=96 Identities=17% Similarity=0.361 Sum_probs=62.9
Q ss_pred eEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccccc-----ccH---------------------
Q 010217 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM-----FDK--------------------- 278 (515)
Q Consensus 225 ~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~-----~~~--------------------- 278 (515)
+|+|||||++|+-+|..|++. |.+|+|+++.+.+... +.+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~--------------g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~ 67 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQ--------------GHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQI 67 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhC--------------CCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCc
Confidence 799999999999999999885 5777777766532100 000
Q ss_pred -------------------------------HHHHHHHHHhhcCCeEEEcCcEEEEEeC--CeEEEEecCCCceEEEecC
Q 010217 279 -------------------------------RITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYG 325 (515)
Q Consensus 279 -------------------------------~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D 325 (515)
.+.+.+.+.+ .++++++++++++++. +++.+. ..+|++ +.+|
T Consensus 68 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~-~~~g~~--~~~~ 142 (373)
T PRK06753 68 LSTMNLLDDKGTLLNKVKLKSNTLNVTLHRQTLIDIIKSYV--KEDAIFTGKEVTKIENETDKVTIH-FADGES--EAFD 142 (373)
T ss_pred ccceeEEcCCCCEEeecccccCCccccccHHHHHHHHHHhC--CCceEEECCEEEEEEecCCcEEEE-ECCCCE--EecC
Confidence 1111111111 2457888999999864 345554 356764 8999
Q ss_pred eEEEccCCCCccchHH
Q 010217 326 MVVWSTGIAPHAIIKD 341 (515)
Q Consensus 326 ~vi~a~G~~~~p~~~~ 341 (515)
+||.|-|. +..+..
T Consensus 143 ~vigadG~--~S~vR~ 156 (373)
T PRK06753 143 LCIGADGI--HSKVRQ 156 (373)
T ss_pred EEEECCCc--chHHHH
Confidence 99999994 555544
No 408
>PLN02976 amine oxidase
Probab=96.75 E-value=0.0016 Score=74.24 Aligned_cols=42 Identities=26% Similarity=0.506 Sum_probs=38.0
Q ss_pred CCCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccC
Q 010217 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT 96 (515)
Q Consensus 55 ~~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~ 96 (515)
....++|+|||||++|+++|+.|.+.|++|+|+|+++.+|+.
T Consensus 690 ~~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGr 731 (1713)
T PLN02976 690 SVDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGR 731 (1713)
T ss_pred cCCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCc
Confidence 345689999999999999999999999999999999888775
No 409
>PRK06475 salicylate hydroxylase; Provisional
Probab=96.73 E-value=0.015 Score=59.61 Aligned_cols=57 Identities=14% Similarity=0.272 Sum_probs=36.4
Q ss_pred HHHHHHhhc-CCeEEEcCcEEEEEeC--CeEEEE--ecCCCceEEEecCeEEEccCCCCccchHHH
Q 010217 282 AFAEEKFSR-DGIDVKLGSMVVKVTD--KEIFTK--VRGNGETSSMPYGMVVWSTGIAPHAIIKDF 342 (515)
Q Consensus 282 ~~~~~~l~~-~gV~v~~~~~v~~i~~--~~v~~~--~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l 342 (515)
+.+.+.+.+ .+|++++++++++++. +++.+. ...+++ .+.+|+||-|-|. +..+...
T Consensus 111 ~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~--~~~adlvIgADG~--~S~vR~~ 172 (400)
T PRK06475 111 SALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVE--TVSAAYLIACDGV--WSMLRAK 172 (400)
T ss_pred HHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCc--EEecCEEEECCCc--cHhHHhh
Confidence 334444443 4899999999999964 344433 222333 4899999999994 5444443
No 410
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=96.71 E-value=0.0019 Score=75.03 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=36.7
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccC
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT 96 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~ 96 (515)
+...||||||+|.||++||..++..|.+|+|+|+.+..++.
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~ 447 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGN 447 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence 44689999999999999999999999999999998776654
No 411
>PRK08071 L-aspartate oxidase; Provisional
Probab=96.67 E-value=0.0018 Score=68.61 Aligned_cols=37 Identities=24% Similarity=0.447 Sum_probs=32.4
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCcc
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAF 95 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~ 95 (515)
..||||||+|.||++||..++. |.+|+|||+.+..++
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g 39 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNS 39 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCC
Confidence 4699999999999999999976 899999999876444
No 412
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=96.67 E-value=0.015 Score=59.37 Aligned_cols=92 Identities=20% Similarity=0.337 Sum_probs=60.3
Q ss_pred eEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccc------------------------------
Q 010217 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN------------------------------ 274 (515)
Q Consensus 225 ~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~------------------------------ 274 (515)
.|+|||+|+.|+-+|..|.+. +.+|+|+++.+.+..
T Consensus 1 DviIiGaG~AGl~~A~~la~~--------------g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARP--------------GLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEY 66 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhC--------------CCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEE
Confidence 389999999999999998864 567777776542210
Q ss_pred --------------cc-cHHHHHHHHHHhhcCCeEEEcCcEEEEEeCC--eEEEEecCCCceEEEecCeEEEccCC
Q 010217 275 --------------MF-DKRITAFAEEKFSRDGIDVKLGSMVVKVTDK--EIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 275 --------------~~-~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
.. ...+.+.+.+.+.+.|++++ ...+..+..+ ....+...+|+. +.++.||.|+|.
T Consensus 67 ~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~--~~a~~VI~A~G~ 139 (388)
T TIGR01790 67 RFPKQPRKLGTAYGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQR--IQARLVIDARGF 139 (388)
T ss_pred ecCCcchhcCCceeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCE--EEeCEEEECCCC
Confidence 00 02233445555667789886 4567777532 223333356653 899999999995
No 413
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=96.67 E-value=0.026 Score=57.87 Aligned_cols=93 Identities=24% Similarity=0.379 Sum_probs=66.1
Q ss_pred eEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccc------------------ccc----------
Q 010217 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL------------------NMF---------- 276 (515)
Q Consensus 225 ~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l------------------~~~---------- 276 (515)
.|+|||+||.|.-+|..|++. |.+|.++++.+.+. +..
T Consensus 5 DVvIVGaGPAGs~aA~~la~~--------------G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~ 70 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAKA--------------GLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTG 70 (396)
T ss_pred eEEEECCchHHHHHHHHHHHc--------------CCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeee
Confidence 799999999999999999986 45666666544321 000
Q ss_pred -----------------------cHHHHHHHHHHhhcCCeEEEcCcEEEEEe--CCeEEEEecCCCceEEEecCeEEEcc
Q 010217 277 -----------------------DKRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWST 331 (515)
Q Consensus 277 -----------------------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~~~v~~~~~~~G~~~~i~~D~vi~a~ 331 (515)
-..+.+++.+..++.|++++.++++..+. ++++......++ .++.++.||.|.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~a~~vI~Ad 148 (396)
T COG0644 71 ARIYFPGEKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGD--DEVRAKVVIDAD 148 (396)
T ss_pred eEEEecCCceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCC--EEEEcCEEEECC
Confidence 01233456677788999999999999986 344444443333 359999999999
Q ss_pred CC
Q 010217 332 GI 333 (515)
Q Consensus 332 G~ 333 (515)
|.
T Consensus 149 G~ 150 (396)
T COG0644 149 GV 150 (396)
T ss_pred Cc
Confidence 94
No 414
>PRK08013 oxidoreductase; Provisional
Probab=96.67 E-value=0.02 Score=58.76 Aligned_cols=54 Identities=17% Similarity=0.176 Sum_probs=36.9
Q ss_pred HHHHHHhhc-CCeEEEcCcEEEEEeC--CeEEEEecCCCceEEEecCeEEEccCCCCccchH
Q 010217 282 AFAEEKFSR-DGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIK 340 (515)
Q Consensus 282 ~~~~~~l~~-~gV~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~ 340 (515)
+.+.+.+.+ .||+++.++++++++. +.+.+. ..+|++ +.+|+||-|-|. +..+.
T Consensus 115 ~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~-~~~g~~--i~a~lvVgADG~--~S~vR 171 (400)
T PRK08013 115 YALWQKAQQSSDITLLAPAELQQVAWGENEAFLT-LKDGSM--LTARLVVGADGA--NSWLR 171 (400)
T ss_pred HHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEE-EcCCCE--EEeeEEEEeCCC--CcHHH
Confidence 334444444 3899999999999853 345444 356764 999999999994 54443
No 415
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=96.66 E-value=0.022 Score=58.01 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=35.4
Q ss_pred HHHHHHhhcCC-eEEEcCcEEEEEeC--CeEEEEecCCCceEEEecCeEEEccCC
Q 010217 282 AFAEEKFSRDG-IDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 282 ~~~~~~l~~~g-V~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
+.+.+.+.+.| ++++.+++|++++. +++.+. ..+|+. +.+|+||.|.|.
T Consensus 110 ~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~-~~~g~~--~~~~~vi~adG~ 161 (385)
T TIGR01988 110 QALWERLQEYPNVTLLCPARVVELPRHSDHVELT-LDDGQQ--LRARLLVGADGA 161 (385)
T ss_pred HHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEE-ECCCCE--EEeeEEEEeCCC
Confidence 33444555666 99999999999863 445543 356764 899999999994
No 416
>PRK10015 oxidoreductase; Provisional
Probab=96.65 E-value=0.02 Score=59.29 Aligned_cols=51 Identities=12% Similarity=0.222 Sum_probs=36.7
Q ss_pred HHHHHHHHhhcCCeEEEcCcEEEEEeC--CeEEEEecCCCceEEEecCeEEEccCC
Q 010217 280 ITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 280 ~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
+...+.+.+++.|++++.+++|+.+.. +.+..+.. ++. ++.||.||.|.|.
T Consensus 110 fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~-~~~--~i~A~~VI~AdG~ 162 (429)
T PRK10015 110 LDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQA-GDD--ILEANVVILADGV 162 (429)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEe-CCe--EEECCEEEEccCc
Confidence 334566677788999999999998753 44544432 333 4999999999994
No 417
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=96.64 E-value=0.0027 Score=68.31 Aligned_cols=42 Identities=24% Similarity=0.248 Sum_probs=37.5
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCc
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPL 98 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~ 98 (515)
...+|||||+|++|++||..+++.|++|+|||+.+..+++..
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~ 56 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTA 56 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc
Confidence 467999999999999999999999999999999887777643
No 418
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.62 E-value=0.019 Score=58.59 Aligned_cols=45 Identities=7% Similarity=0.087 Sum_probs=33.4
Q ss_pred CCeEEEcCcEEEEEeC--CeEEEEecCCCceEEEecCeEEEccCCCCccchH
Q 010217 291 DGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIK 340 (515)
Q Consensus 291 ~gV~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~ 340 (515)
.||+++.++++++++. +++++. +.+|++ +.+|+||.|.| .+..+.
T Consensus 124 ~~i~i~~~~~v~~~~~~~~~~~v~-~~~g~~--~~~~lvIgADG--~~S~vR 170 (384)
T PRK08849 124 PNLTLMCPEKLADLEFSAEGNRVT-LESGAE--IEAKWVIGADG--ANSQVR 170 (384)
T ss_pred CCeEEECCCceeEEEEcCCeEEEE-ECCCCE--EEeeEEEEecC--CCchhH
Confidence 4799999999999863 445544 356764 99999999999 455553
No 419
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=96.62 E-value=0.0016 Score=70.00 Aligned_cols=33 Identities=12% Similarity=0.286 Sum_probs=30.1
Q ss_pred eEEEECCcHHHHHHHHhcc----CCCCeEEEEcCCCC
Q 010217 60 KVVVLGTGWAGTSFLKNLN----NPSYDVQVISPRNY 92 (515)
Q Consensus 60 ~VvIIGgG~AGlsaA~~L~----~~g~~V~vie~~~~ 92 (515)
||||||||.|||+||..++ ..|.+|+|+|+...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 6999999999999999998 67999999998753
No 420
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=96.60 E-value=0.021 Score=58.44 Aligned_cols=49 Identities=8% Similarity=0.104 Sum_probs=35.0
Q ss_pred HHHHHHhhcC-CeEEEcCcEEEEEeC--CeEEEEecCCCceEEEecCeEEEccCC
Q 010217 282 AFAEEKFSRD-GIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 282 ~~~~~~l~~~-gV~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
+.+.+.+.+. ||+++.+++++++.. +++.+. ..+|++ +.+|.||.|.|.
T Consensus 116 ~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~-~~~g~~--~~a~~vI~AdG~ 167 (391)
T PRK08020 116 LALWQALEAHPNVTLRCPASLQALQRDDDGWELT-LADGEE--IQAKLVIGADGA 167 (391)
T ss_pred HHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEE-ECCCCE--EEeCEEEEeCCC
Confidence 4444555555 999999999999863 344443 356654 899999999994
No 421
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.57 E-value=0.0039 Score=62.26 Aligned_cols=38 Identities=24% Similarity=0.276 Sum_probs=28.3
Q ss_pred CCCCCeEEEECCcHHHHHHHHhccCCC--CeEEEEcCCCC
Q 010217 55 GIKKKKVVVLGTGWAGTSFLKNLNNPS--YDVQVISPRNY 92 (515)
Q Consensus 55 ~~~~~~VvIIGgG~AGlsaA~~L~~~g--~~V~vie~~~~ 92 (515)
....++|+|||||.++...+..|.+.+ .+|+++.++..
T Consensus 187 ~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~ 226 (341)
T PF13434_consen 187 SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPG 226 (341)
T ss_dssp ----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS
T ss_pred ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCc
Confidence 345789999999999999999998554 58999998754
No 422
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.56 E-value=0.02 Score=58.95 Aligned_cols=102 Identities=22% Similarity=0.314 Sum_probs=68.0
Q ss_pred cceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccc----------------------------
Q 010217 223 ILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN---------------------------- 274 (515)
Q Consensus 223 ~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~---------------------------- 274 (515)
.++++|||+|++|+-.|..|.+. |.++++++|.+.+..
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~--------------g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~ 71 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLRE--------------GHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMM 71 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHC--------------CCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhh
Confidence 46999999999999999999984 678888877764421
Q ss_pred ------------c-c-c-HHHHHHHHHHhhcCCe--EEEcCcEEEEEeCC--e---EEEEecCCCceEEEecCeEEEccC
Q 010217 275 ------------M-F-D-KRITAFAEEKFSRDGI--DVKLGSMVVKVTDK--E---IFTKVRGNGETSSMPYGMVVWSTG 332 (515)
Q Consensus 275 ------------~-~-~-~~~~~~~~~~l~~~gV--~v~~~~~v~~i~~~--~---v~~~~~~~G~~~~i~~D~vi~a~G 332 (515)
. + + .++.++++...++-++ .+.+++.+.+++.. + |...... +...+.-+|.|++|+|
T Consensus 72 ~~~dfpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~-~~~~~~ifd~VvVctG 150 (448)
T KOG1399|consen 72 GYSDFPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNG-TQIEEEIFDAVVVCTG 150 (448)
T ss_pred cCCCCCCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCC-cceeEEEeeEEEEccc
Confidence 0 0 1 1456677777777665 56777877777532 2 3333211 2123577999999999
Q ss_pred CCCccch
Q 010217 333 IAPHAII 339 (515)
Q Consensus 333 ~~~~p~~ 339 (515)
--..|++
T Consensus 151 h~~~P~~ 157 (448)
T KOG1399|consen 151 HYVEPRI 157 (448)
T ss_pred CcCCCCC
Confidence 5433655
No 423
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=96.55 E-value=0.028 Score=57.78 Aligned_cols=44 Identities=16% Similarity=0.307 Sum_probs=32.5
Q ss_pred CCeEEEcCcEEEEEeC--CeEEEEecCCCceEEEecCeEEEccCCCCccch
Q 010217 291 DGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAII 339 (515)
Q Consensus 291 ~gV~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~ 339 (515)
.||+++.++++++++. +.+.+. +.+|+. +.+|+||.|.| .+..+
T Consensus 125 ~~v~v~~~~~v~~i~~~~~~~~v~-~~~g~~--~~a~lvIgADG--~~S~v 170 (405)
T PRK08850 125 DNVTLLMPARCQSIAVGESEAWLT-LDNGQA--LTAKLVVGADG--ANSWL 170 (405)
T ss_pred CCeEEEcCCeeEEEEeeCCeEEEE-ECCCCE--EEeCEEEEeCC--CCChh
Confidence 4799999999999853 344444 356764 99999999999 35444
No 424
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=96.51 E-value=0.02 Score=58.54 Aligned_cols=56 Identities=13% Similarity=0.252 Sum_probs=34.9
Q ss_pred HHHHhhcCCeEEEcCcEEEEEe---CCeEEEEecCCCceEEEecCeEEEccCCCCccchHH
Q 010217 284 AEEKFSRDGIDVKLGSMVVKVT---DKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKD 341 (515)
Q Consensus 284 ~~~~l~~~gV~v~~~~~v~~i~---~~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~ 341 (515)
+.+.+.+.|+.++++.+++.+. ++.+.+....+|+..++.+|+||-|-|. +..+..
T Consensus 109 L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~--~S~VR~ 167 (390)
T TIGR02360 109 LMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGF--HGVSRA 167 (390)
T ss_pred HHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCC--chhhHH
Confidence 3444555688888887776663 2333333212676556999999999994 544433
No 425
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=96.49 E-value=0.023 Score=59.06 Aligned_cols=54 Identities=7% Similarity=0.182 Sum_probs=37.5
Q ss_pred HHHHHHhhcC---CeEEEcCcEEEEEe---------CCeEEEEecCCCceEEEecCeEEEccCCCCccchH
Q 010217 282 AFAEEKFSRD---GIDVKLGSMVVKVT---------DKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIK 340 (515)
Q Consensus 282 ~~~~~~l~~~---gV~v~~~~~v~~i~---------~~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~ 340 (515)
+.+.+.+.+. +|+++.++++.+++ ++.+++. +.+|++ +.+|+||-|-| .+..+.
T Consensus 121 ~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~-~~~g~~--i~a~llVgADG--~~S~vR 186 (437)
T TIGR01989 121 NSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHIT-LSDGQV--LYTKLLIGADG--SNSNVR 186 (437)
T ss_pred HHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEE-EcCCCE--EEeeEEEEecC--CCChhH
Confidence 3344555555 49999999999995 2345554 356764 99999999999 455443
No 426
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=96.47 E-value=0.022 Score=58.23 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=32.7
Q ss_pred CCeEEEECCcHHHHHHHHhccC----CCCeEEEEcCCCCCccC
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNN----PSYDVQVISPRNYFAFT 96 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~----~g~~V~vie~~~~~~~~ 96 (515)
.++.=|||+|.|+|+||.+|-+ +|-+|+|+|+.+..|+.
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGs 44 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGS 44 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCc
Confidence 3678899999999999999974 46789999988776654
No 427
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=96.43 E-value=0.047 Score=55.88 Aligned_cols=45 Identities=16% Similarity=0.361 Sum_probs=32.3
Q ss_pred HHHhhcCCeEEEcCcEEEEEeC--CeEEEEecCCCceEEEecCeEEEccCC
Q 010217 285 EEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 285 ~~~l~~~gV~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
.+.+++.|++++.++.|..++. +.+.+. +.+| ++.+|.||+|+|.
T Consensus 156 ~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~-~~~g---~i~ad~vV~A~G~ 202 (393)
T PRK11728 156 AELIQARGGEIRLGAEVTALDEHANGVVVR-TTQG---EYEARTLINCAGL 202 (393)
T ss_pred HHHHHhCCCEEEcCCEEEEEEecCCeEEEE-ECCC---EEEeCEEEECCCc
Confidence 3444567999999999998863 334433 3445 3899999999994
No 428
>PRK09077 L-aspartate oxidase; Provisional
Probab=96.42 E-value=0.0027 Score=67.65 Aligned_cols=38 Identities=26% Similarity=0.294 Sum_probs=32.6
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCcc
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAF 95 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~ 95 (515)
...||||||+|.||++||..++.. .+|+|||+....++
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g 44 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEG 44 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCC
Confidence 357999999999999999999875 89999999865443
No 429
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.42 E-value=0.023 Score=57.71 Aligned_cols=54 Identities=9% Similarity=0.146 Sum_probs=35.6
Q ss_pred HHHHHHHhhcC-CeEEEcCcEEEEEeC--CeEEEEecCCCceEEEecCeEEEccCCCCccchH
Q 010217 281 TAFAEEKFSRD-GIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIK 340 (515)
Q Consensus 281 ~~~~~~~l~~~-gV~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~ 340 (515)
.+.+.+.+.+. +++++.+++++++.. +++.+.. .++ ++.+|+||-|-|. +..+.
T Consensus 107 ~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~-~~~---~~~adlvIgADG~--~S~vR 163 (374)
T PRK06617 107 KKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKF-DDK---QIKCNLLIICDGA--NSKVR 163 (374)
T ss_pred HHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEE-cCC---EEeeCEEEEeCCC--CchhH
Confidence 33444444554 488999999998853 4455443 444 3999999999994 55443
No 430
>PRK07538 hypothetical protein; Provisional
Probab=96.39 E-value=0.029 Score=57.83 Aligned_cols=42 Identities=24% Similarity=0.297 Sum_probs=28.9
Q ss_pred C-eEEEcCcEEEEEeC--CeEE--EEecCCCceEEEecCeEEEccCC
Q 010217 292 G-IDVKLGSMVVKVTD--KEIF--TKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 292 g-V~v~~~~~v~~i~~--~~v~--~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
| +.+++++++++++. +++. +.+..+|+..++.+|+||-|-|.
T Consensus 117 g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~ 163 (413)
T PRK07538 117 GPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGI 163 (413)
T ss_pred CCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECCCC
Confidence 5 57999999999863 3322 22222344446999999999994
No 431
>PRK02106 choline dehydrogenase; Validated
Probab=96.39 E-value=0.0034 Score=67.41 Aligned_cols=36 Identities=19% Similarity=0.395 Sum_probs=33.1
Q ss_pred CCCeEEEECCcHHHHHHHHhccC-CCCeEEEEcCCCC
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNN-PSYDVQVISPRNY 92 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~-~g~~V~vie~~~~ 92 (515)
..+|+||||||.||+.+|..|++ .|++|+|+|+.+.
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 45899999999999999999998 8999999999864
No 432
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=96.38 E-value=0.0032 Score=65.13 Aligned_cols=93 Identities=29% Similarity=0.452 Sum_probs=26.3
Q ss_pred eEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccc-----------c------------------
Q 010217 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN-----------M------------------ 275 (515)
Q Consensus 225 ~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~-----------~------------------ 275 (515)
.|+|||||+.|+-.|..+++. |.+|.|+++.+.+.. .
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~--------------G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~ 66 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARA--------------GAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNR 66 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHT--------------TS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHS
T ss_pred CEEEECccHHHHHHHHHHHHC--------------CCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHH
Confidence 389999999999999999985 789999988875421 0
Q ss_pred --------------------ccHH-HHHHHHHHhhcCCeEEEcCcEEEEEeCC--eEEEEec--CCCceEEEecCeEEEc
Q 010217 276 --------------------FDKR-ITAFAEEKFSRDGIDVKLGSMVVKVTDK--EIFTKVR--GNGETSSMPYGMVVWS 330 (515)
Q Consensus 276 --------------------~~~~-~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~v~~~~~--~~G~~~~i~~D~vi~a 330 (515)
+++. ....+.+.+++.||++++++.+..+..+ .+..+.. .+| ..++.++.+|-|
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g-~~~i~A~~~IDa 145 (428)
T PF12831_consen 67 LRARGGYPQEDRYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSG-RKEIRAKVFIDA 145 (428)
T ss_dssp T-------------------------------------------------------------------------------
T ss_pred Hhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc
Confidence 0000 1112345556789999999999998643 3333322 224 447999999999
Q ss_pred cC
Q 010217 331 TG 332 (515)
Q Consensus 331 ~G 332 (515)
||
T Consensus 146 TG 147 (428)
T PF12831_consen 146 TG 147 (428)
T ss_dssp --
T ss_pred cc
Confidence 99
No 433
>PRK06996 hypothetical protein; Provisional
Probab=96.36 E-value=0.028 Score=57.64 Aligned_cols=53 Identities=8% Similarity=0.088 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhcCCeEEEcCcEEEEEeC--CeEEEEecCCCc-eEEEecCeEEEccC
Q 010217 279 RITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGE-TSSMPYGMVVWSTG 332 (515)
Q Consensus 279 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~v~~~~~~~G~-~~~i~~D~vi~a~G 332 (515)
.+.+.+.+.+++.|++++.++++++++. +++++.. .+|. ..++.+|+||-|.|
T Consensus 116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~-~~~~g~~~i~a~lvIgADG 171 (398)
T PRK06996 116 SLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLAL-GTPQGARTLRARIAVQAEG 171 (398)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEE-CCCCcceEEeeeEEEECCC
Confidence 4566677778888999999999998864 4555543 3321 12599999999999
No 434
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=96.35 E-value=0.041 Score=58.33 Aligned_cols=53 Identities=19% Similarity=0.172 Sum_probs=36.7
Q ss_pred HHHHHHHHhhcCCeEEEcCcEEEEEeC--CeEEEEe--cCCCceEEEecCeEEEccC
Q 010217 280 ITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKV--RGNGETSSMPYGMVVWSTG 332 (515)
Q Consensus 280 ~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~v~~~~--~~~G~~~~i~~D~vi~a~G 332 (515)
+.+.+.+.+++.||++++++.++++.. +.+..+. ..+|+...+.++.||+|+|
T Consensus 192 l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtG 248 (506)
T PRK06481 192 LVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTG 248 (506)
T ss_pred HHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCC
Confidence 334455566778999999999999863 3333221 2344555699999999998
No 435
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=96.30 E-value=0.054 Score=57.41 Aligned_cols=48 Identities=13% Similarity=0.103 Sum_probs=34.4
Q ss_pred HHhhcCCeEEEcCcEEEEEeC--CeE--EEEecCCCceEEEecCeEEEccCC
Q 010217 286 EKFSRDGIDVKLGSMVVKVTD--KEI--FTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 286 ~~l~~~gV~v~~~~~v~~i~~--~~v--~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
..+.+.|++++.+++|+++.. +.+ ...+..+|+..++.++.||.|+|.
T Consensus 163 ~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~ 214 (508)
T PRK12266 163 RDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGP 214 (508)
T ss_pred HHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCc
Confidence 345678999999999999853 223 233223466557999999999993
No 436
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=96.30 E-value=0.039 Score=56.42 Aligned_cols=94 Identities=24% Similarity=0.466 Sum_probs=59.2
Q ss_pred eEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecc-ccc-------------------------------
Q 010217 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAA-DHI------------------------------- 272 (515)
Q Consensus 225 ~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~-~~~------------------------------- 272 (515)
.|+||||||+|+-+|..|++. |.+|.++++. +..
T Consensus 2 DVvIVGaGpAG~~aA~~La~~--------------G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~ 67 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARA--------------GIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRM 67 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhC--------------CCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEE
Confidence 699999999999999999875 4555555544 110
Q ss_pred -----------cc-------ccc-HHHHHHHHHHhhcCCeEEEcCcEEEEEeC--CeEEEEecC-----CCceEEEecCe
Q 010217 273 -----------LN-------MFD-KRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRG-----NGETSSMPYGM 326 (515)
Q Consensus 273 -----------l~-------~~~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~v~~~~~~-----~G~~~~i~~D~ 326 (515)
++ .++ ..+.+.+.+.+.+.|++++.. .++++.. +.+.+.... +|+..++.+|.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~ 146 (388)
T TIGR02023 68 ISPSRVPIKVTIPSEDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADV 146 (388)
T ss_pred EcCCCceeeeccCCCCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCE
Confidence 00 011 123344555566789999765 5777753 333333211 23334699999
Q ss_pred EEEccCC
Q 010217 327 VVWSTGI 333 (515)
Q Consensus 327 vi~a~G~ 333 (515)
||.|.|.
T Consensus 147 VI~AdG~ 153 (388)
T TIGR02023 147 VIGADGA 153 (388)
T ss_pred EEECCCC
Confidence 9999994
No 437
>PRK06185 hypothetical protein; Provisional
Probab=96.27 E-value=0.051 Score=55.87 Aligned_cols=52 Identities=17% Similarity=0.280 Sum_probs=34.3
Q ss_pred HHHHHHHhhc-CCeEEEcCcEEEEEeC--CeEE-E-EecCCCceEEEecCeEEEccCC
Q 010217 281 TAFAEEKFSR-DGIDVKLGSMVVKVTD--KEIF-T-KVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 281 ~~~~~~~l~~-~gV~v~~~~~v~~i~~--~~v~-~-~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
.+.+.+.+.+ .||+++.++++.++.. +.+. + ....+|+ .++.+|.||.|.|.
T Consensus 111 ~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~-~~i~a~~vI~AdG~ 167 (407)
T PRK06185 111 LDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGP-GEIRADLVVGADGR 167 (407)
T ss_pred HHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCc-EEEEeCEEEECCCC
Confidence 3444444544 4899999999999853 3432 1 1223454 35999999999994
No 438
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=96.26 E-value=0.027 Score=57.73 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=20.0
Q ss_pred eEEEECCChhHHHHHHHHHHhh
Q 010217 225 HFVIVGGGPTGVEFAAELHDFV 246 (515)
Q Consensus 225 ~vvVvGgG~~g~E~A~~l~~~~ 246 (515)
+|+||||||.|+-+|..|++.+
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G 23 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAG 23 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCC
Confidence 7999999999999999998753
No 439
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=96.25 E-value=0.038 Score=58.72 Aligned_cols=49 Identities=18% Similarity=0.210 Sum_probs=32.4
Q ss_pred HHHHHhhcC-CeEEEcCcEEEEE-e--CCeEEEEecCCCceEEEecCeEEEccCCC
Q 010217 283 FAEEKFSRD-GIDVKLGSMVVKV-T--DKEIFTKVRGNGETSSMPYGMVVWSTGIA 334 (515)
Q Consensus 283 ~~~~~l~~~-gV~v~~~~~v~~i-~--~~~v~~~~~~~G~~~~i~~D~vi~a~G~~ 334 (515)
.+.+.+++. |+.++.+ .++.+ . ++.+..+.+.+|.. +.||.||+|+|..
T Consensus 101 ~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~--I~Ad~VILATGtf 153 (617)
T TIGR00136 101 AMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLK--FRAKAVIITTGTF 153 (617)
T ss_pred HHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCE--EECCEEEEccCcc
Confidence 444555555 8888766 45555 2 34555555566764 9999999999953
No 440
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.22 E-value=0.044 Score=55.91 Aligned_cols=48 Identities=21% Similarity=0.305 Sum_probs=32.3
Q ss_pred HHHHHHhhcC-CeEEEcCcEEEEEe--CCeEEEEecCCCceEEEecCeEEEccCC
Q 010217 282 AFAEEKFSRD-GIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 282 ~~~~~~l~~~-gV~v~~~~~v~~i~--~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
+.+.+.+.+. ++. +.++++.+++ ++++.+. ..+|+. +.+|.||.|.|.
T Consensus 115 ~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~-~~~g~~--~~a~~vI~AdG~ 165 (388)
T PRK07494 115 RALEARVAELPNIT-RFGDEAESVRPREDEVTVT-LADGTT--LSARLVVGADGR 165 (388)
T ss_pred HHHHHHHhcCCCcE-EECCeeEEEEEcCCeEEEE-ECCCCE--EEEeEEEEecCC
Confidence 3444445554 465 7788998885 3455544 356664 899999999994
No 441
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.21 E-value=0.0045 Score=65.68 Aligned_cols=39 Identities=26% Similarity=0.244 Sum_probs=34.6
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCc
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFA 94 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~ 94 (515)
..+.||||||||.|||.||..++..|.+|+|+|+.+..+
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r 42 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR 42 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence 346899999999999999999999999999999876543
No 442
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=96.21 E-value=0.03 Score=56.90 Aligned_cols=93 Identities=24% Similarity=0.382 Sum_probs=62.1
Q ss_pred EEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccc--cc---------c---c---------------
Q 010217 226 FVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHI--LN---------M---F--------------- 276 (515)
Q Consensus 226 vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~--l~---------~---~--------------- 276 (515)
|+|||+|+.|+-+|..|.+.. .+.+|.++++.+.. -+ . +
T Consensus 2 viIvGaGpAGlslA~~l~~~~------------~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~ 69 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADAR------------PGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYF 69 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcC------------CCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEe
Confidence 799999999999999994321 36788888766543 10 0 0
Q ss_pred ----------------cHHHHHHHHHHhhcCCeEEEcCcEEEEEeCCeE-EEEecCCCceEEEecCeEEEccCC
Q 010217 277 ----------------DKRITAFAEEKFSRDGIDVKLGSMVVKVTDKEI-FTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 277 ----------------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~v-~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
...+.+.+.+.+...|+ +..++.|.+|+.+.. ..+.+.+|+. +.++.||-|.|.
T Consensus 70 ~~~~~~~~~~~Y~~i~~~~f~~~l~~~~~~~~~-~~~~~~V~~i~~~~~~~~v~~~~g~~--i~a~~VvDa~g~ 140 (374)
T PF05834_consen 70 PDGSRILIDYPYCMIDRADFYEFLLERAAAGGV-IRLNARVTSIEETGDGVLVVLADGRT--IRARVVVDARGP 140 (374)
T ss_pred CCCceEEcccceEEEEHHHHHHHHHHHhhhCCe-EEEccEEEEEEecCceEEEEECCCCE--EEeeEEEECCCc
Confidence 01233444555554454 667789999976443 3334567774 999999999994
No 443
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=96.21 E-value=0.0073 Score=59.50 Aligned_cols=101 Identities=21% Similarity=0.359 Sum_probs=66.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcc----CCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEe
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLN----NPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEA 132 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~----~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~ 132 (515)
.+++|-|||+|+-|-..|..|. ..|.+|.=+=.+.+ ...-.+|. .+..+-.+-+++.|++|+ -++
T Consensus 346 ek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~-nm~kiLPe---------yls~wt~ekir~~GV~V~-pna 414 (659)
T KOG1346|consen 346 EKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKY-NMEKILPE---------YLSQWTIEKIRKGGVDVR-PNA 414 (659)
T ss_pred hcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccC-ChhhhhHH---------HHHHHHHHHHHhcCceec-cch
Confidence 3578999999999988888876 35666544333322 11112333 333334455677888874 577
Q ss_pred EEEEEecCCCEEE--EeeCCccCCCCCceEEeecCEEEEccCCCcCCC
Q 010217 133 ECFKIDAENKKVY--CRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (515)
Q Consensus 133 ~v~~id~~~~~v~--~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~ 178 (515)
.|.++....+.+. +.++. ++..|.||+|+|..|+.-
T Consensus 415 ~v~sv~~~~~nl~lkL~dG~----------~l~tD~vVvavG~ePN~e 452 (659)
T KOG1346|consen 415 KVESVRKCCKNLVLKLSDGS----------ELRTDLVVVAVGEEPNSE 452 (659)
T ss_pred hhhhhhhhccceEEEecCCC----------eeeeeeEEEEecCCCchh
Confidence 8888776666544 44443 899999999999998754
No 444
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.15 E-value=0.051 Score=56.02 Aligned_cols=39 Identities=13% Similarity=0.259 Sum_probs=28.6
Q ss_pred CeEEEcCcEEEEEeC--CeEEEEecCCCceEEEecCeEEEccCC
Q 010217 292 GIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 292 gV~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
++.+++++++++++. +++.+.. .+|++ +.+|.||.|.|.
T Consensus 117 ~~~v~~~~~v~~i~~~~~~~~v~~-~~g~~--~~ad~vVgADG~ 157 (414)
T TIGR03219 117 EGIASFGKRATQIEEQAEEVQVLF-TDGTE--YRCDLLIGADGI 157 (414)
T ss_pred CceEEcCCEEEEEEecCCcEEEEE-cCCCE--EEeeEEEECCCc
Confidence 455788999998863 4455443 56764 899999999994
No 445
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=96.14 E-value=0.083 Score=54.97 Aligned_cols=53 Identities=25% Similarity=0.227 Sum_probs=37.5
Q ss_pred HHHHHHHHhhcCCeEEEcCcEEEEEeC--C-eE---EEEecCCCceEEEecCeEEEccCC
Q 010217 280 ITAFAEEKFSRDGIDVKLGSMVVKVTD--K-EI---FTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 280 ~~~~~~~~l~~~gV~v~~~~~v~~i~~--~-~v---~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
+.+.+.+.+++.||++++++.++++.. + .+ .+.. .+++...+.++.||+|+|-
T Consensus 132 l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-~~g~~~~~~a~~VVlAtGg 190 (439)
T TIGR01813 132 IVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKG-KGKGIYIKAAKAVVLATGG 190 (439)
T ss_pred HHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEe-CCCeEEEEecceEEEecCC
Confidence 445555666778999999999999863 2 23 3332 3455556889999999994
No 446
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=96.14 E-value=0.082 Score=55.46 Aligned_cols=51 Identities=16% Similarity=0.226 Sum_probs=35.7
Q ss_pred HHHHHHhhcCCeEEEcCcEEEEEe--CCeEEEEe--cCCCceEEEecCeEEEccC
Q 010217 282 AFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKV--RGNGETSSMPYGMVVWSTG 332 (515)
Q Consensus 282 ~~~~~~l~~~gV~v~~~~~v~~i~--~~~v~~~~--~~~G~~~~i~~D~vi~a~G 332 (515)
..+.+.+++.|++++++++++++. ++.+..+. ..+|+...+.++.||+|+|
T Consensus 135 ~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtG 189 (466)
T PRK08274 135 NALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAG 189 (466)
T ss_pred HHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCC
Confidence 334455567799999999999986 34444332 2345555689999999998
No 447
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.10 E-value=0.08 Score=54.11 Aligned_cols=48 Identities=17% Similarity=0.237 Sum_probs=33.7
Q ss_pred HHHHHhhc-CCeEEEcCcEEEEEeC--CeEEEEecCCCceEEEecCeEEEccCC
Q 010217 283 FAEEKFSR-DGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 283 ~~~~~l~~-~gV~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
.+.+.+.+ .|++++.+++++++.. +++.+.. .+|.. +.+|.||.|.|.
T Consensus 117 ~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~-~~g~~--~~a~~vI~AdG~ 167 (395)
T PRK05732 117 RLFALLDKAPGVTLHCPARVANVERTQGSVRVTL-DDGET--LTGRLLVAADGS 167 (395)
T ss_pred HHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEE-CCCCE--EEeCEEEEecCC
Confidence 33444444 5899999999999863 3455443 45653 899999999994
No 448
>PLN02985 squalene monooxygenase
Probab=96.10 E-value=0.078 Score=56.20 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=20.9
Q ss_pred cceEEEECCChhHHHHHHHHHHhh
Q 010217 223 ILHFVIVGGGPTGVEFAAELHDFV 246 (515)
Q Consensus 223 ~~~vvVvGgG~~g~E~A~~l~~~~ 246 (515)
..+|+|||||+.|+-+|..|.+.+
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G 66 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDG 66 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcC
Confidence 348999999999999999998753
No 449
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=96.08 E-value=0.0025 Score=57.03 Aligned_cols=40 Identities=25% Similarity=0.289 Sum_probs=33.7
Q ss_pred CCeEEEECCcHHHHHHHHhcc--CCCCeEEEEcCCCCCccCC
Q 010217 58 KKKVVVLGTGWAGTSFLKNLN--NPSYDVQVISPRNYFAFTP 97 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~--~~g~~V~vie~~~~~~~~~ 97 (515)
..||||||+|.|||++|+.+. ++..+|.+||..-..|+..
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGa 117 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGA 117 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcc
Confidence 459999999999999999998 6789999999876555443
No 450
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.99 E-value=0.029 Score=59.70 Aligned_cols=129 Identities=22% Similarity=0.345 Sum_probs=85.7
Q ss_pred ceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccc------c-ccc-----HHHHHHHHHHhhcC
Q 010217 224 LHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL------N-MFD-----KRITAFAEEKFSRD 291 (515)
Q Consensus 224 ~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l------~-~~~-----~~~~~~~~~~l~~~ 291 (515)
.+++|||.|..|..+..++.+... ...+||++-..+++- . -+. +++.-.-.+..+++
T Consensus 4 ~klvvvGnGmag~r~iEell~~~~-----------~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~ 72 (793)
T COG1251 4 QKLVIIGNGMAGHRTIEELLESAP-----------DLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEEN 72 (793)
T ss_pred eeEEEEecccchhhHHHHHHhcCc-----------ccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHc
Confidence 489999999999999998887432 246888886655431 1 111 23333345677899
Q ss_pred CeEEEcCcEEEEEeCCeEEEEecCCCceEEEecCeEEEccCCCCccchHHHHHHhCCCCCCceeeCCCccccCCCCEEEe
Q 010217 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEWLRVEGSDSIYAL 371 (515)
Q Consensus 292 gV~v~~~~~v~~i~~~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~~~~~~g~i~vd~~l~t~~~~~IyA~ 371 (515)
||+++.+.++..|+.+.-.+.. +.|.. +.+|-+|+||| ..|++.. .. |.+..+-+ -+| +.++++|.
T Consensus 73 ~i~L~~~~~v~~idr~~k~V~t-~~g~~--~~YDkLilATG--S~pfi~P-iP--G~~~~~v~----~~R--~i~D~~am 138 (793)
T COG1251 73 GITLYTGEKVIQIDRANKVVTT-DAGRT--VSYDKLIIATG--SYPFILP-IP--GSDLPGVF----VYR--TIDDVEAM 138 (793)
T ss_pred CcEEEcCCeeEEeccCcceEEc-cCCcE--eecceeEEecC--ccccccC-CC--CCCCCCee----EEe--cHHHHHHH
Confidence 9999999999999876544443 56775 99999999999 6776622 11 11111211 123 36778888
Q ss_pred cccccc
Q 010217 372 GDCATV 377 (515)
Q Consensus 372 GD~~~~ 377 (515)
+||+..
T Consensus 139 ~~~ar~ 144 (793)
T COG1251 139 LDCARN 144 (793)
T ss_pred HHHHhc
Confidence 888553
No 451
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=95.95 E-value=0.055 Score=56.29 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=19.8
Q ss_pred eEEEECCChhHHHHHHHHHHh
Q 010217 225 HFVIVGGGPTGVEFAAELHDF 245 (515)
Q Consensus 225 ~vvVvGgG~~g~E~A~~l~~~ 245 (515)
.|+||||||.|.-+|..|++.
T Consensus 41 DViIVGaGPAG~~aA~~LA~~ 61 (450)
T PLN00093 41 RVAVIGGGPAGACAAETLAKG 61 (450)
T ss_pred eEEEECCCHHHHHHHHHHHhC
Confidence 899999999999999999875
No 452
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.95 E-value=0.0086 Score=48.50 Aligned_cols=34 Identities=35% Similarity=0.429 Sum_probs=31.2
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCC
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPR 90 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~ 90 (515)
+.++|+|||||..|..-+..|.+.|.+|+|+++.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 4689999999999999999999999999999977
No 453
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=95.90 E-value=0.0054 Score=57.65 Aligned_cols=41 Identities=20% Similarity=0.304 Sum_probs=34.5
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCC------CeEEEEcCCCCCccC
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPS------YDVQVISPRNYFAFT 96 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g------~~V~vie~~~~~~~~ 96 (515)
.+.++|+|||||..|+++|++|...+ ..|||||.....++.
T Consensus 8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~ga 54 (380)
T KOG2852|consen 8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGA 54 (380)
T ss_pred CCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccc
Confidence 44699999999999999999999655 789999988665543
No 454
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.84 E-value=0.013 Score=61.21 Aligned_cols=35 Identities=31% Similarity=0.447 Sum_probs=32.3
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCC
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~ 91 (515)
+.++|+|||+|..|+++|..|+..|++|+++|+..
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 35899999999999999999999999999999864
No 455
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=95.80 E-value=0.092 Score=57.18 Aligned_cols=60 Identities=12% Similarity=0.235 Sum_probs=38.9
Q ss_pred HHHHHHHHhhcCC--eEEEcCcEEEEEeCC-----eEEEEe--c---CCCceEEEecCeEEEccCCCCccchHH
Q 010217 280 ITAFAEEKFSRDG--IDVKLGSMVVKVTDK-----EIFTKV--R---GNGETSSMPYGMVVWSTGIAPHAIIKD 341 (515)
Q Consensus 280 ~~~~~~~~l~~~g--V~v~~~~~v~~i~~~-----~v~~~~--~---~~G~~~~i~~D~vi~a~G~~~~p~~~~ 341 (515)
+.+.+.+.+.+.| |+++.+++++.++.+ .+++.. . .+|+..++.||.||-|-| .+..+..
T Consensus 143 le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDG--a~S~VR~ 214 (634)
T PRK08294 143 VHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDG--ARSRVRK 214 (634)
T ss_pred HHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCC--CchHHHH
Confidence 4455556666655 578889999998632 244332 1 146545699999999999 4555543
No 456
>PRK08275 putative oxidoreductase; Provisional
Probab=95.73 E-value=0.13 Score=55.21 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=37.4
Q ss_pred HHHHHHHhhcCCeEEEcCcEEEEEe---CCeEE---EEecCCCceEEEecCeEEEccCC
Q 010217 281 TAFAEEKFSRDGIDVKLGSMVVKVT---DKEIF---TKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 281 ~~~~~~~l~~~gV~v~~~~~v~~i~---~~~v~---~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
.+.+.+.+++.||+++.++.++++. ++.+. ..+..+|+...+.++.||+|||-
T Consensus 140 ~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG 198 (554)
T PRK08275 140 KKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGA 198 (554)
T ss_pred HHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCC
Confidence 3445555667899999999999984 22333 33334676667899999999984
No 457
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=95.72 E-value=0.097 Score=52.75 Aligned_cols=123 Identities=12% Similarity=0.162 Sum_probs=79.2
Q ss_pred hccceEEEECCCh-----h--HHH-----------HHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccccc--ccHHH
Q 010217 221 KRILHFVIVGGGP-----T--GVE-----------FAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM--FDKRI 280 (515)
Q Consensus 221 ~~~~~vvVvGgG~-----~--g~E-----------~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~--~~~~~ 280 (515)
+.++++.+=|+|- . -.+ +-..|..+..+|..+.|..+ |.. +..+...++.|. -...+
T Consensus 12 ~~GkKil~TG~GRCN~TN~~~~~~~~~~~~~~~~fl~~al~~f~~~d~~~fF~~~--Gi~-~~~e~~grvfP~S~~A~sV 88 (376)
T TIGR03862 12 SVGRKFLMAGKSGLNLTHSEPLPRFIERYGDAAEWLAPWLEAFDAVALQDWARGL--GIE-TFVGSSGRVFPVEMKAAPL 88 (376)
T ss_pred CccceeEEcCCCCcccCCCCchHHHHHhcCCchHHHHHHHHhCCHHHHHHHHHHC--CCc-eEECCCCEECCCCCCHHHH
Confidence 3578999999872 1 011 22223444455555555542 232 334555677763 34678
Q ss_pred HHHHHHHhhcCCeEEEcCcEEEEEeCCeEEEEecCCCceEEEecCeEEEccCCCCccch------HHHHHHhCC
Q 010217 281 TAFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAII------KDFMKQVGQ 348 (515)
Q Consensus 281 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~------~~l~~~~~~ 348 (515)
.+.+...+++.||++++++.|+.|++++..+.. .++.. .+.||.||+|+|-...|.+ -.+++++|.
T Consensus 89 v~~L~~~l~~~gV~i~~~~~V~~i~~~~~~v~~-~~~~~-~~~a~~vIlAtGG~s~p~~Gs~g~gy~la~~lGh 160 (376)
T TIGR03862 89 LRAWLKRLAEQGVQFHTRHRWIGWQGGTLRFET-PDGQS-TIEADAVVLALGGASWSQLGSDGAWQQVLDQRGV 160 (376)
T ss_pred HHHHHHHHHHCCCEEEeCCEEEEEeCCcEEEEE-CCCce-EEecCEEEEcCCCccccccCCCcHHHHHHHHCCC
Confidence 899999999999999999999999655444443 22222 4899999999996554544 245777765
No 458
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=95.68 E-value=0.012 Score=62.58 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=34.1
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCC
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~ 92 (515)
...+|+||||+|+||-.+|..|+..|++|+|+|....
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~ 41 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGP 41 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCCC
Confidence 4578999999999999999999999999999998853
No 459
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=95.66 E-value=0.11 Score=53.60 Aligned_cols=55 Identities=16% Similarity=0.300 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhcCCeEEEcCcEEEEEe--CCeE---EEEecCCCceEEEecCeEEEccCC
Q 010217 279 RITAFAEEKFSRDGIDVKLGSMVVKVT--DKEI---FTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 279 ~~~~~~~~~l~~~gV~v~~~~~v~~i~--~~~v---~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
.+...+.+.+++.||+|+++++++++. ++.| .+....+|+...+.++.||+|+|-
T Consensus 142 ~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG 201 (417)
T PF00890_consen 142 ALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGG 201 (417)
T ss_dssp HHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----
T ss_pred HHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCc
Confidence 345566677788899999999999984 3443 444345788778999999999993
No 460
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=95.65 E-value=0.054 Score=50.82 Aligned_cols=34 Identities=26% Similarity=0.446 Sum_probs=30.1
Q ss_pred eEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccc
Q 010217 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHI 272 (515)
Q Consensus 225 ~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~ 272 (515)
+|+|||+|..|+-+|..|+.. |.+|++++++..+
T Consensus 3 siaIVGaGiAGl~aA~~L~~a--------------G~~vtV~eKg~Gv 36 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREA--------------GREVTVFEKGRGV 36 (331)
T ss_pred cEEEEccchHHHHHHHHHHhc--------------CcEEEEEEcCCCc
Confidence 799999999999999999984 7899999887644
No 461
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=95.64 E-value=0.14 Score=53.29 Aligned_cols=49 Identities=22% Similarity=0.350 Sum_probs=32.4
Q ss_pred HHHHHHhhcCCeEEEcCcEEEEEe--C-CeEEEEecCCCceEEEecCeEEEccCC
Q 010217 282 AFAEEKFSRDGIDVKLGSMVVKVT--D-KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 282 ~~~~~~l~~~gV~v~~~~~v~~i~--~-~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
+.+.+...+.||+++.++ |..+. + +.+..+.+.+|++ +.+|++|=|+|.
T Consensus 158 ~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~--i~ad~~IDASG~ 209 (454)
T PF04820_consen 158 QFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRT--IEADFFIDASGR 209 (454)
T ss_dssp HHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEE--EEESEEEE-SGG
T ss_pred HHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCE--EEEeEEEECCCc
Confidence 444555567899999886 55543 3 3466666667774 999999999994
No 462
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=95.61 E-value=0.11 Score=45.47 Aligned_cols=34 Identities=29% Similarity=0.609 Sum_probs=25.4
Q ss_pred EEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecc
Q 010217 227 VIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAA 269 (515)
Q Consensus 227 vVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~ 269 (515)
+|||+|++|+-++..|.+.. ......+|+|+++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~---------~~~~~~~I~vfd~~ 34 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA---------DPKPPLEITVFDPS 34 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc---------CCCCCCEEEEEcCC
Confidence 58999999999999998763 01135678888664
No 463
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=95.58 E-value=0.16 Score=54.98 Aligned_cols=47 Identities=15% Similarity=0.053 Sum_probs=32.9
Q ss_pred HHhhcCC-eEEEcCcEEEEEe--CCeEE---EEecCCCceEEEecCeEEEccC
Q 010217 286 EKFSRDG-IDVKLGSMVVKVT--DKEIF---TKVRGNGETSSMPYGMVVWSTG 332 (515)
Q Consensus 286 ~~l~~~g-V~v~~~~~v~~i~--~~~v~---~~~~~~G~~~~i~~D~vi~a~G 332 (515)
+.+++.+ |+++.++.+.++. ++.+. .....+|+...+.++.||+|+|
T Consensus 140 ~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATG 192 (608)
T PRK06854 140 EAAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATG 192 (608)
T ss_pred HHHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCC
Confidence 3444554 9999999999974 34433 2233456655789999999999
No 464
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.0081 Score=57.68 Aligned_cols=104 Identities=21% Similarity=0.318 Sum_probs=69.2
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEE--EEEeEE
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDIC--FWEAEC 134 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~--~~~~~v 134 (515)
.+-+.+|||||+.+|.||-.|.--|++|||.=++--+ .++ .+++.+.+.+.+...|+.+. ++..+|
T Consensus 197 ~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~L------rGF------Dqdmae~v~~~m~~~Gikf~~~~vp~~V 264 (503)
T KOG4716|consen 197 EPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILL------RGF------DQDMAELVAEHMEERGIKFLRKTVPERV 264 (503)
T ss_pred CCCceEEEccceeeeehhhhHhhcCCCcEEEEEEeec------ccc------cHHHHHHHHHHHHHhCCceeecccceee
Confidence 3568999999999999999999999999998766221 111 23666777888888997641 123355
Q ss_pred EEEecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCCcCC
Q 010217 135 FKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANT 177 (515)
Q Consensus 135 ~~id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~ 177 (515)
..++...-.|...... .+++-+-.||.+++|.|-.+..
T Consensus 265 eq~~~g~l~v~~k~t~-----t~~~~~~~ydTVl~AiGR~~~~ 302 (503)
T KOG4716|consen 265 EQIDDGKLRVFYKNTN-----TGEEGEEEYDTVLWAIGRKALT 302 (503)
T ss_pred eeccCCcEEEEeeccc-----ccccccchhhhhhhhhccccch
Confidence 5565443233322211 2223366799999999987654
No 465
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=95.52 E-value=0.013 Score=62.65 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=30.4
Q ss_pred eEEEECCcHHHHHHHHhccCCC-CeEEEEcCCCC
Q 010217 60 KVVVLGTGWAGTSFLKNLNNPS-YDVQVISPRNY 92 (515)
Q Consensus 60 ~VvIIGgG~AGlsaA~~L~~~g-~~V~vie~~~~ 92 (515)
|+||||||.||..+|.+|++.+ ++|+|+|+.+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 6999999999999999999887 79999999864
No 466
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=95.49 E-value=0.15 Score=54.89 Aligned_cols=49 Identities=18% Similarity=0.131 Sum_probs=34.8
Q ss_pred HHHHhhcCCeEEEcCcEEEEEe--CCeEE---EEecCCCceEEEecCeEEEccC
Q 010217 284 AEEKFSRDGIDVKLGSMVVKVT--DKEIF---TKVRGNGETSSMPYGMVVWSTG 332 (515)
Q Consensus 284 ~~~~l~~~gV~v~~~~~v~~i~--~~~v~---~~~~~~G~~~~i~~D~vi~a~G 332 (515)
+.+.+++.||+++.++.++++. ++.+. .....+|+...+.++.||+|+|
T Consensus 135 L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtG 188 (566)
T TIGR01812 135 LYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATG 188 (566)
T ss_pred HHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCC
Confidence 3444556799999999998874 33333 3333467655789999999999
No 467
>PRK07121 hypothetical protein; Validated
Probab=95.41 E-value=0.25 Score=52.28 Aligned_cols=53 Identities=15% Similarity=0.229 Sum_probs=35.9
Q ss_pred HHHHHHHHhhcCCeEEEcCcEEEEEeC--C-eEEEEe-cCCCceEEEec-CeEEEccC
Q 010217 280 ITAFAEEKFSRDGIDVKLGSMVVKVTD--K-EIFTKV-RGNGETSSMPY-GMVVWSTG 332 (515)
Q Consensus 280 ~~~~~~~~l~~~gV~v~~~~~v~~i~~--~-~v~~~~-~~~G~~~~i~~-D~vi~a~G 332 (515)
+...+.+.+++.|+++++++.++++.. + .+..+. ..+|+...+.+ +.||+|+|
T Consensus 179 ~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtG 236 (492)
T PRK07121 179 LMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAG 236 (492)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCC
Confidence 334455566678999999999999842 2 343222 13455556888 99999999
No 468
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.41 E-value=0.071 Score=52.91 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=30.6
Q ss_pred CeEEEECCcHHHHHHHHhccCCCCeEEEEcCCC
Q 010217 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (515)
Q Consensus 59 ~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~ 91 (515)
++|.|||.|+.||+.|.-|+..||+|+.+|..+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 589999999999999999999999999999663
No 469
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.32 E-value=0.17 Score=54.47 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=36.2
Q ss_pred HHHHHHhhcCCeEEEcCcEEEEEe--CCeE---EEEecCCCceEEEecCeEEEccCC
Q 010217 282 AFAEEKFSRDGIDVKLGSMVVKVT--DKEI---FTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 282 ~~~~~~l~~~gV~v~~~~~v~~i~--~~~v---~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
..+.+.+++.||+++.++.++++. ++.+ ......+|+...+.++.||+|||-
T Consensus 139 ~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG 195 (575)
T PRK05945 139 HELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGG 195 (575)
T ss_pred HHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCC
Confidence 334455566789999999998874 3333 223345676556899999999993
No 470
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.29 E-value=0.021 Score=52.57 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=31.2
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCC
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPR 90 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~ 90 (515)
.++|+|||||..|...+..|...|.+|+||++.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 579999999999999999999999999999976
No 471
>PLN02785 Protein HOTHEAD
Probab=95.26 E-value=0.021 Score=61.36 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=32.4
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCC
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~ 92 (515)
...+|+||||||.||..+|..|.. +++|+|||+...
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 446899999999999999999998 699999999864
No 472
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=95.26 E-value=0.03 Score=41.40 Aligned_cols=32 Identities=28% Similarity=0.446 Sum_probs=27.8
Q ss_pred EECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccc
Q 010217 228 IVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL 273 (515)
Q Consensus 228 VvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l 273 (515)
|||+|.+|+-+|..|.+. +.+|+|+++.+.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~--------------g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA--------------GYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHT--------------TSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHC--------------CCcEEEEecCcccC
Confidence 799999999999999984 68999999998764
No 473
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=95.23 E-value=0.051 Score=53.31 Aligned_cols=87 Identities=18% Similarity=0.195 Sum_probs=61.2
Q ss_pred eEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccccc----------ccHHHHHHHHHHhhcCCeE
Q 010217 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM----------FDKRITAFAEEKFSRDGID 294 (515)
Q Consensus 225 ~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~----------~~~~~~~~~~~~l~~~gV~ 294 (515)
+|.|||+||.|+-.|..|.+.- ++.+|+++++.+.++.. .-+-+.+.+.+.+++....
T Consensus 22 ~vcIVGsGPAGfYtA~~LLk~~------------~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfs 89 (468)
T KOG1800|consen 22 RVCIVGSGPAGFYTAQHLLKRH------------PNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFS 89 (468)
T ss_pred eEEEECCCchHHHHHHHHHhcC------------CCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceE
Confidence 9999999999999998887631 46899999999876431 1133456677788888888
Q ss_pred EEcCcEEEEEeCCeEEEEecCCCceEEEecCeEEEccCC
Q 010217 295 VKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 295 v~~~~~v~~i~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
+..|..| +..+.+.++. -.+|.||+|.|-
T Consensus 90 f~gNv~v----G~dvsl~eL~------~~ydavvLaYGa 118 (468)
T KOG1800|consen 90 FFGNVKV----GRDVSLKELT------DNYDAVVLAYGA 118 (468)
T ss_pred EEeccee----cccccHHHHh------hcccEEEEEecC
Confidence 8877765 2223333321 347888888884
No 474
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=95.13 E-value=0.017 Score=57.82 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=42.9
Q ss_pred CCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCc
Q 010217 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGT 106 (515)
Q Consensus 56 ~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~ 106 (515)
+..+|+||||+|.-||.||.+|++.|.+|.|+|++...++.........|.
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavteeivpGf 62 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVTEEIVPGF 62 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcceeeehhcccc
Confidence 457899999999999999999999999999999997777765555555553
No 475
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.10 E-value=0.029 Score=49.22 Aligned_cols=34 Identities=29% Similarity=0.381 Sum_probs=31.1
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCC
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPR 90 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~ 90 (515)
..++|+|||||..|..-|..|...|++|+||++.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 4689999999999999999999999999999754
No 476
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=95.07 E-value=0.024 Score=54.41 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=32.3
Q ss_pred CCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCC
Q 010217 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (515)
Q Consensus 58 ~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~ 92 (515)
..+|+|||+|.|||-||..|+..|.+|+|+|.+..
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEge 39 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE 39 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence 47999999999999999999999999999997754
No 477
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.05 E-value=0.15 Score=52.03 Aligned_cols=36 Identities=31% Similarity=0.437 Sum_probs=27.5
Q ss_pred eEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccc
Q 010217 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADH 271 (515)
Q Consensus 225 ~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~ 271 (515)
+|+|||+|++|+.+|..|.+.-+ ....|+++++.+.
T Consensus 3 ~VAIIGgG~sGi~~A~~Ll~~~~-----------~~~~Isi~e~~~~ 38 (474)
T COG4529 3 KVAIIGGGFSGIYMAAHLLKSPR-----------PSGLISIFEPRPN 38 (474)
T ss_pred eEEEECCchHHHHHHHHHHhCCC-----------CCCceEEeccccc
Confidence 89999999999999999987532 1223888766654
No 478
>PRK06175 L-aspartate oxidase; Provisional
Probab=94.88 E-value=0.24 Score=51.35 Aligned_cols=54 Identities=11% Similarity=0.219 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhc-CCeEEEcCcEEEEEe--CCeEEEE-ecCCCceEEEecCeEEEccC
Q 010217 279 RITAFAEEKFSR-DGIDVKLGSMVVKVT--DKEIFTK-VRGNGETSSMPYGMVVWSTG 332 (515)
Q Consensus 279 ~~~~~~~~~l~~-~gV~v~~~~~v~~i~--~~~v~~~-~~~~G~~~~i~~D~vi~a~G 332 (515)
.+.+.+.+.+++ .||++++++.++++. ++.+..+ ...+|+...+.++.||+|+|
T Consensus 129 ~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtG 186 (433)
T PRK06175 129 KVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATG 186 (433)
T ss_pred HHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccC
Confidence 344455555554 599999999999974 3333321 12245544689999999999
No 479
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.78 E-value=0.026 Score=49.66 Aligned_cols=32 Identities=25% Similarity=0.378 Sum_probs=30.2
Q ss_pred eEEEECCcHHHHHHHHhccCCCCeEEEEcCCC
Q 010217 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (515)
Q Consensus 60 ~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~ 91 (515)
+|.|||||..|.++|..|+..|++|+|..+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 68999999999999999999999999999874
No 480
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=0.071 Score=51.63 Aligned_cols=107 Identities=17% Similarity=0.181 Sum_probs=70.6
Q ss_pred ccceEEEECCChhHHHHHHHHHHhhHHH--HHhhCcccCCCcEEE--E-EeccccccccccHHHHHHHHHHhhcCCeEEE
Q 010217 222 RILHFVIVGGGPTGVEFAAELHDFVDED--LFKLYPKVKDSVKIT--L-LEAADHILNMFDKRITAFAEEKFSRDGIDVK 296 (515)
Q Consensus 222 ~~~~vvVvGgG~~g~E~A~~l~~~~~~~--~~~~~p~~~~~~~Vt--l-v~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~ 296 (515)
.+-.|+||||||.|...|.+.++.+-.. +..+|-+ +|. + ++.--....+-.+.+...++++.++..|.++
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGG-----QvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDim 284 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGG-----QVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVM 284 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCC-----eeccccchhheeccccccchHHHHHHHHHHhhcCchhh
Confidence 3458999999999999988877754110 1112211 110 0 0000011123457888899999999999999
Q ss_pred cCcEEEEEeC----CeEEEEecCCCceEEEecCeEEEccCCCC
Q 010217 297 LGSMVVKVTD----KEIFTKVRGNGETSSMPYGMVVWSTGIAP 335 (515)
Q Consensus 297 ~~~~v~~i~~----~~v~~~~~~~G~~~~i~~D~vi~a~G~~~ 335 (515)
...+.+++++ ++..-+.+.+|-. +.+..+|++||.++
T Consensus 285 n~qra~~l~~a~~~~~l~ev~l~nGav--LkaktvIlstGArW 325 (520)
T COG3634 285 NLQRASKLEPAAVEGGLIEVELANGAV--LKARTVILATGARW 325 (520)
T ss_pred hhhhhhcceecCCCCccEEEEecCCce--eccceEEEecCcch
Confidence 8888888875 4455555677885 99999999999533
No 481
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.70 E-value=0.32 Score=53.04 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=33.1
Q ss_pred HhhcCCeEEEcCcEEEEEe--CCeEE---EEecCCCceEEEecCeEEEccC
Q 010217 287 KFSRDGIDVKLGSMVVKVT--DKEIF---TKVRGNGETSSMPYGMVVWSTG 332 (515)
Q Consensus 287 ~l~~~gV~v~~~~~v~~i~--~~~v~---~~~~~~G~~~~i~~D~vi~a~G 332 (515)
.+++.||++++++.++++. ++.+. ..+..+|+...+.++.||+|||
T Consensus 179 ~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATG 229 (640)
T PRK07573 179 QIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATG 229 (640)
T ss_pred HHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCC
Confidence 4456789999999998874 34433 3332357666799999999998
No 482
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.70 E-value=0.049 Score=52.78 Aligned_cols=105 Identities=18% Similarity=0.247 Sum_probs=66.9
Q ss_pred CCCCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEE
Q 010217 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAEC 134 (515)
Q Consensus 55 ~~~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v 134 (515)
...++|++|||||+-++..|--++..|.++.|+=+.....-. + .+.+.....+.+...|++++ .+..+
T Consensus 186 ee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~-----F------D~~i~~~v~~~~~~~ginvh-~~s~~ 253 (478)
T KOG0405|consen 186 EEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRG-----F------DEMISDLVTEHLEGRGINVH-KNSSV 253 (478)
T ss_pred hhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcc-----h------hHHHHHHHHHHhhhcceeec-ccccc
Confidence 456899999999999999988888999999988776542210 0 11233334566677788874 35555
Q ss_pred EEEecCCCE-EEEeeCCccCCCCCceEEeecCEEEEccCCCcCCCC
Q 010217 135 FKIDAENKK-VYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (515)
Q Consensus 135 ~~id~~~~~-v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ 179 (515)
+.+...... ..+.... + .....|.|+.|+|-.|+.-.
T Consensus 254 ~~v~K~~~g~~~~i~~~-----~---~i~~vd~llwAiGR~Pntk~ 291 (478)
T KOG0405|consen 254 TKVIKTDDGLELVITSH-----G---TIEDVDTLLWAIGRKPNTKG 291 (478)
T ss_pred eeeeecCCCceEEEEec-----c---ccccccEEEEEecCCCCccc
Confidence 555433222 1111111 1 13448999999999887653
No 483
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=94.69 E-value=0.12 Score=57.63 Aligned_cols=35 Identities=29% Similarity=0.522 Sum_probs=29.3
Q ss_pred eEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccc
Q 010217 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADH 271 (515)
Q Consensus 225 ~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~ 271 (515)
+|+|||||+.|+-+|..|.+.+ ++.+|+|+++.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~------------~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLD------------PAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhC------------CCCeEEEEecCCC
Confidence 7999999999999999998752 2578888888764
No 484
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.61 E-value=0.35 Score=52.01 Aligned_cols=50 Identities=16% Similarity=0.046 Sum_probs=34.5
Q ss_pred HHHHHhhcCCeEEEcCcEEEEEe--CCeEE---EEecCCCceEEEecCeEEEccC
Q 010217 283 FAEEKFSRDGIDVKLGSMVVKVT--DKEIF---TKVRGNGETSSMPYGMVVWSTG 332 (515)
Q Consensus 283 ~~~~~l~~~gV~v~~~~~v~~i~--~~~v~---~~~~~~G~~~~i~~D~vi~a~G 332 (515)
.+.+.+++.||+++.++.++++. ++.+. ..+..+|+...+.++.||+|||
T Consensus 141 ~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 195 (566)
T PRK06452 141 TLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATG 195 (566)
T ss_pred HHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCC
Confidence 34444555689999999888875 33333 3333456666789999999999
No 485
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.54 E-value=0.34 Score=51.85 Aligned_cols=53 Identities=17% Similarity=0.143 Sum_probs=36.8
Q ss_pred HHHHHHHhhcCCeEEEcCcEEEEEe--CCe-EEE---EecCCCceEEEecCeEEEccCC
Q 010217 281 TAFAEEKFSRDGIDVKLGSMVVKVT--DKE-IFT---KVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 281 ~~~~~~~l~~~gV~v~~~~~v~~i~--~~~-v~~---~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
...+.+.+++.||++++++.++++. +++ +.. ....+|+...+.++.||+|||-
T Consensus 137 ~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 195 (543)
T PRK06263 137 MMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGG 195 (543)
T ss_pred HHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCC
Confidence 3344555666899999999999874 233 432 2224677667999999999983
No 486
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.50 E-value=0.046 Score=50.20 Aligned_cols=34 Identities=29% Similarity=0.363 Sum_probs=31.2
Q ss_pred CCCeEEEECCcHHHHHHHHhccCCCCeEEEEcCC
Q 010217 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPR 90 (515)
Q Consensus 57 ~~~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~ 90 (515)
..++|+|||||-.|...|..|...|++|+||++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 4689999999999999999999999999999864
No 487
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.48 E-value=0.035 Score=58.13 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=30.8
Q ss_pred eEEEECCcHHHHHHHHhccCCCCeEEEEcCCCC
Q 010217 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (515)
Q Consensus 60 ~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~~ 92 (515)
+|+|||.|++|+++|+.|.+.|++|+++|+++.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 699999999999999999999999999998754
No 488
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.45 E-value=0.18 Score=52.66 Aligned_cols=75 Identities=24% Similarity=0.385 Sum_probs=52.0
Q ss_pred ccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEE
Q 010217 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMV 301 (515)
Q Consensus 222 ~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v 301 (515)
++++++|+|+|.+|+.+|..|... |.+|+++++... ..+.+ ..+.+.+.|++++.+...
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~--------------G~~V~~~d~~~~------~~~~~-~~~~l~~~~~~~~~~~~~ 62 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKL--------------GAKVILTDEKEE------DQLKE-ALEELGELGIELVLGEYP 62 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--------------CCEEEEEeCCch------HHHHH-HHHHHHhcCCEEEeCCcc
Confidence 457999999999999999999985 789999988642 12222 224456678877655433
Q ss_pred EEEeCCeEEEEecCCCceEEEecCeEEEccCC
Q 010217 302 VKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 302 ~~i~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
.+ . .-.+|+||.++|+
T Consensus 63 ~~--------------~--~~~~d~vv~~~g~ 78 (450)
T PRK14106 63 EE--------------F--LEGVDLVVVSPGV 78 (450)
T ss_pred hh--------------H--hhcCCEEEECCCC
Confidence 20 0 1247999999995
No 489
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=94.42 E-value=0.046 Score=55.65 Aligned_cols=35 Identities=26% Similarity=0.273 Sum_probs=31.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccc
Q 010217 224 LHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHI 272 (515)
Q Consensus 224 ~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~ 272 (515)
++|+|||||++|+++|..|++. |.+|+|+++.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~--------------Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKR--------------GVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhC--------------CCcEEEEEccCcc
Confidence 3899999999999999999985 7899999976655
No 490
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.30 E-value=0.17 Score=46.40 Aligned_cols=33 Identities=27% Similarity=0.399 Sum_probs=28.8
Q ss_pred ccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEec
Q 010217 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEA 268 (515)
Q Consensus 222 ~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~ 268 (515)
.+++++|||||.+|...+..|... +.+|+++.+
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~--------------ga~V~VIs~ 41 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKY--------------GAHIVVISP 41 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--------------CCeEEEEcC
Confidence 567999999999999999988874 689999964
No 491
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=94.17 E-value=0.53 Score=49.69 Aligned_cols=55 Identities=13% Similarity=0.047 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhc-CCeEEEcCcEEEEEeC--CeEEEEec-CCCceEEEecCeEEEccCC
Q 010217 279 RITAFAEEKFSR-DGIDVKLGSMVVKVTD--KEIFTKVR-GNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 279 ~~~~~~~~~l~~-~gV~v~~~~~v~~i~~--~~v~~~~~-~~G~~~~i~~D~vi~a~G~ 333 (515)
.+...+.+.+++ .||+++.++.++++.. +.+..+.. ..++...+.++.||+|+|-
T Consensus 129 ~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG 187 (488)
T TIGR00551 129 EVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGG 187 (488)
T ss_pred HHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCc
Confidence 344445555665 6999999999999853 33432211 1244446899999999994
No 492
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=94.17 E-value=0.55 Score=50.69 Aligned_cols=42 Identities=19% Similarity=0.146 Sum_probs=30.1
Q ss_pred CCeEEEcCcEEEEEe--CCeEE---EEecCCCceEEEecCeEEEccC
Q 010217 291 DGIDVKLGSMVVKVT--DKEIF---TKVRGNGETSSMPYGMVVWSTG 332 (515)
Q Consensus 291 ~gV~v~~~~~v~~i~--~~~v~---~~~~~~G~~~~i~~D~vi~a~G 332 (515)
.+|+++.++.++++. ++.+. .....+|+...+.++.||+|+|
T Consensus 147 ~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATG 193 (582)
T PRK09231 147 PQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATG 193 (582)
T ss_pred CCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCC
Confidence 378888888888865 23332 3344567666799999999998
No 493
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=94.17 E-value=0.34 Score=48.09 Aligned_cols=81 Identities=15% Similarity=0.228 Sum_probs=55.1
Q ss_pred HHHHhhCcccCCCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEEEEEeC--CeEEEEecCCCceEEEecC
Q 010217 248 EDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYG 325 (515)
Q Consensus 248 ~~~~~~~p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~v~~~~~~~G~~~~i~~D 325 (515)
+++.+.+|.+.+...--++......+ -+..+...+.+.+++.|++++.+++|+.+.. +.+..+.+.+|. +.||
T Consensus 109 ~e~~~~~p~l~~~~~~g~~~~~~g~v--~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g~---~~a~ 183 (337)
T TIGR02352 109 RALRRLEPYLSGGIRGAVFYPDDAHV--DPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSGD---VQAD 183 (337)
T ss_pred HHHHHhCCCCCcccceEEEcCCCceE--ChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCCE---EECC
Confidence 44555667654433334444433322 2456777888889999999999999999964 445555545553 8899
Q ss_pred eEEEccCC
Q 010217 326 MVVWSTGI 333 (515)
Q Consensus 326 ~vi~a~G~ 333 (515)
.||+|+|.
T Consensus 184 ~vV~a~G~ 191 (337)
T TIGR02352 184 QVVLAAGA 191 (337)
T ss_pred EEEEcCCh
Confidence 99999994
No 494
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.14 E-value=0.11 Score=44.27 Aligned_cols=88 Identities=16% Similarity=0.184 Sum_probs=0.0
Q ss_pred ccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEeccccccccccHHHHHHHHHHhhcCCeEEEcCcEE
Q 010217 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMV 301 (515)
Q Consensus 222 ~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v 301 (515)
++++++|+|+|-+|-.++..|...+ -.+|+++.|.. +-.+.+.+.+....+.+..-...
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g-------------~~~i~i~nRt~--------~ra~~l~~~~~~~~~~~~~~~~~ 69 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALG-------------AKEITIVNRTP--------ERAEALAEEFGGVNIEAIPLEDL 69 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTT-------------SSEEEEEESSH--------HHHHHHHHHHTGCSEEEEEGGGH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC-------------CCEEEEEECCH--------HHHHHHHHHcCccccceeeHHHH
Q ss_pred EEEeCCeEEEEecCCCceEEEecCeEEEccCCCCccchHHHHHHh
Q 010217 302 VKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQV 346 (515)
Q Consensus 302 ~~i~~~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~ 346 (515)
.+.. -.+|.||.||+....+.....+...
T Consensus 70 ~~~~----------------~~~DivI~aT~~~~~~i~~~~~~~~ 98 (135)
T PF01488_consen 70 EEAL----------------QEADIVINATPSGMPIITEEMLKKA 98 (135)
T ss_dssp CHHH----------------HTESEEEE-SSTTSTSSTHHHHTTT
T ss_pred HHHH----------------hhCCeEEEecCCCCcccCHHHHHHH
No 495
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.99 E-value=0.062 Score=56.36 Aligned_cols=38 Identities=29% Similarity=0.573 Sum_probs=33.9
Q ss_pred ccceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccc
Q 010217 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL 273 (515)
Q Consensus 222 ~~~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l 273 (515)
+.++|+|||+|.+|+-+|..|.++ |.+|+|++.++++.
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~--------------G~~V~VLEARdRvG 51 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDF--------------GFDVLVLEARDRVG 51 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHc--------------CCceEEEeccCCcC
Confidence 456999999999999999999997 68999999988764
No 496
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.96 E-value=0.052 Score=50.79 Aligned_cols=33 Identities=24% Similarity=0.515 Sum_probs=31.0
Q ss_pred CeEEEECCcHHHHHHHHhccCCCCeEEEEcCCC
Q 010217 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (515)
Q Consensus 59 ~~VvIIGgG~AGlsaA~~L~~~g~~V~vie~~~ 91 (515)
++++|||+|.-|.+.|..|...|++|++||+.+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 589999999999999999999999999999873
No 497
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=93.96 E-value=0.033 Score=53.26 Aligned_cols=94 Identities=19% Similarity=0.322 Sum_probs=57.1
Q ss_pred ceEEEECCChhHHHHHHHHHHhhHHHHHhhCcccCCCcEEEEEecccccc--cc--c-cHHHHHH-----HHHHhhcCCe
Q 010217 224 LHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL--NM--F-DKRITAF-----AEEKFSRDGI 293 (515)
Q Consensus 224 ~~vvVvGgG~~g~E~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~~l--~~--~-~~~~~~~-----~~~~l~~~gV 293 (515)
-+|+|||||.-|+-+|..+.+.. ..-+|-+++..+... |. + ...+... -+..+--.|.
T Consensus 40 ~kvLVvGGGsgGi~~A~k~~rkl------------~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a 107 (446)
T KOG3851|consen 40 FKVLVVGGGSGGIGMAAKFYRKL------------GSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGA 107 (446)
T ss_pred eEEEEEcCCcchhHHHHHHHhhc------------CCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCc
Confidence 49999999999999999887643 234788888766421 11 0 1111100 0111111233
Q ss_pred EEEcCcEEEEEeCCeEEEEecCCCceEEEecCeEEEccCC
Q 010217 294 DVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 294 ~v~~~~~v~~i~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
.++. ..|++++++.-.++. .+|++ |.+|.+|+|.|+
T Consensus 108 ~wi~-ekv~~f~P~~N~v~t-~gg~e--IsYdylviA~Gi 143 (446)
T KOG3851|consen 108 TWIK-EKVKEFNPDKNTVVT-RGGEE--ISYDYLVIAMGI 143 (446)
T ss_pred HHHH-HHHHhcCCCcCeEEc-cCCcE--EeeeeEeeeeec
Confidence 3333 566777766555553 56775 999999999996
No 498
>PRK07804 L-aspartate oxidase; Provisional
Probab=93.95 E-value=0.58 Score=50.04 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=34.0
Q ss_pred HHHHHHHHhhcCCeEEEcCcEEEEEe--CC-e---EEEEec---CCCceEEEecCeEEEccCC
Q 010217 280 ITAFAEEKFSRDGIDVKLGSMVVKVT--DK-E---IFTKVR---GNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 280 ~~~~~~~~l~~~gV~v~~~~~v~~i~--~~-~---v~~~~~---~~G~~~~i~~D~vi~a~G~ 333 (515)
+...+.+.+++.||+++.++.+.++. ++ . +.+... .++....+.++.||+|+|-
T Consensus 146 i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG 208 (541)
T PRK07804 146 VQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGG 208 (541)
T ss_pred HHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCC
Confidence 34445555666789999999998884 22 3 333211 1222346899999999983
No 499
>PRK08401 L-aspartate oxidase; Provisional
Probab=93.93 E-value=0.61 Score=48.89 Aligned_cols=50 Identities=16% Similarity=0.265 Sum_probs=30.2
Q ss_pred HHHHHHHHhhcCCeEEEcCcEEEEEe--CCeEEEEecCCCceEEEecCeEEEccCC
Q 010217 280 ITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (515)
Q Consensus 280 ~~~~~~~~l~~~gV~v~~~~~v~~i~--~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (515)
+.+.+.+.+++.||+++.+ .++.+. ++.+..+.. +|+ .+.++.||+|||-
T Consensus 122 i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g~--~i~a~~VVLATGG 173 (466)
T PRK08401 122 IIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DGE--LLKFDATVIATGG 173 (466)
T ss_pred HHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CCE--EEEeCeEEECCCc
Confidence 3344445556677877765 555553 234433332 354 3889999999994
No 500
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=93.91 E-value=0.14 Score=52.52 Aligned_cols=94 Identities=15% Similarity=0.104 Sum_probs=63.0
Q ss_pred EEECCcHHHHHHH-Hhcc----CCCCeEEEEcCCCCCccCCccchhccCcccccccccchHHHHhhcCceEEEEEeEEEE
Q 010217 62 VVLGTGWAGTSFL-KNLN----NPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (515)
Q Consensus 62 vIIGgG~AGlsaA-~~L~----~~g~~V~vie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~v~~~~~~v~~ 136 (515)
+|++.|.-|+..+ ..++ +.|.+|++++..+. .++.. ++...+.+.+++.|+++ +.+++|.+
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~pp-----slpG~--------rL~~aL~~~l~~~Gv~I-~~g~~V~~ 284 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPP-----SVPGL--------RLQNALRRAFERLGGRI-MPGDEVLG 284 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCC-----CCchH--------HHHHHHHHHHHhCCCEE-EeCCEEEE
Confidence 6678888888776 3332 57999999986543 22221 35555777788888887 46788999
Q ss_pred EecCCCEEEEeeCCccCCCCCceEEeecCEEEEccCCC
Q 010217 137 IDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR 174 (515)
Q Consensus 137 id~~~~~v~~~~~~~~~~~~~~~~~~~~d~lviAtG~~ 174 (515)
++..+..+...... +++...+.+|.+|+|+|..
T Consensus 285 v~~~~~~V~~v~~~-----~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 285 AEFEGGRVTAVWTR-----NHGDIPLRARHFVLATGSF 317 (422)
T ss_pred EEEeCCEEEEEEee-----CCceEEEECCEEEEeCCCc
Confidence 88666554332111 2224479999999999974
Done!