BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010218
(515 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G63|A Chain A, Crystal Structure Of Cytosolic Imp-Gmp Specific
5'-Nucleotidase (Lpg0095) In Complex With Phosphate Ions
From Legionella Pneumophila, Northeast Structural
Genomics Consortium Target Lgr1
Length = 470
Score = 218 bits (556), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 139/473 (29%), Positives = 238/473 (50%), Gaps = 27/473 (5%)
Query: 28 IFCSRTLNLRSISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNL-RNMGFP--VEGLAFDP 84
+F +R +N+R I IG DMD+TL+ YN +E YD L + +P ++ F+
Sbjct: 6 VFVNRIINMRKIKLIGLDMDHTLIRYNSKNFESLVYDLVKERLAESFHYPEEIKKFKFNF 65
Query: 85 DLVIRGLVIDKEKGNLVKADRFGYVKRAMHGTTMLSNRAVSEMYGRELVDLRKESRWEFL 144
D IRGLVID + GN++K R+G ++ + HGT +S ++Y VDL + + +
Sbjct: 66 DDAIRGLVIDSKNGNILKLSRYGAIRLSYHGTKQISFSDQKKIYRSIYVDL-GDPNYMAI 124
Query: 145 NTLFSVSEAVAYMQMVNRLDEGAIGPELGPLDYKGLYKAVGKALFRAHVEGQLKSEIMSK 204
+T FS++ + Y Q+V+ D P+ P Y+ + + V + + H +G LK+ I+
Sbjct: 125 DTSFSIAFCILYGQLVDLKD---TNPDKMP-SYQAIAQDVQYCVDKVHSDGTLKNIIIKN 180
Query: 205 PELFVXXXXXXXXXXXXQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNM 264
+ +V GKK+ ++TNS+Y Y+ ++ ++ + FL W+ LF
Sbjct: 181 LKKYVIREKEVVEGLKHFIRYGKKIFILTNSEYSYSKLLLDYALSPFLDKGEHWQGLFEF 240
Query: 265 VIVSARKPEFFQMSHPLYEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILY 324
VI A KP FF + V G M G+Y GG+A+ L + GDEILY
Sbjct: 241 VITLANKPRFFYDNLRFLSVNPENGTMTNVHGPIVPGVYQGGNAKKFTEDLGVGGDEILY 300
Query: 325 VGDHIYTDVSQSKVHLRWRTALICRELEEEYNALINSRGQRARLVELINQKEVVGDXXXX 384
+GDHIY D+ + K WRTAL+ EL EE + I + ++ E + K+ +
Sbjct: 301 IGDHIYGDILRLKKDCNWRTALVVEELGEEIASQIRALPIEKKIGEAMAIKKELEQKYV- 359
Query: 385 XXXXXXXXXXGHPAQTLAATNMDD--QELTESMQKLLVVMQRLDQKIAPMLESDGELFNK 442
L ++D+ Q+ + + L + + +D +I+ +L+ +N
Sbjct: 360 ---------------DLCTRSIDESSQQYDQEIHDLQLQISTVDLQISRLLQEQNSFYNP 404
Query: 443 RWGFLSRAGLWDKSHLMRQIEKYADIYTSRVSNFLHYTPFMYFRSQEQTLAHD 495
+W + RAG ++S+ Q++++A IY ++S+ L ++P YFR+ + LAHD
Sbjct: 405 KWERVFRAGA-EESYFAYQVDRFACIYMEKLSDLLEHSPMTYFRANRRLLAHD 456
>pdb|2BDE|A Chain A, Crystal Structure Of The Cytosolic Imp-Gmp Specific
5'-Nucleotidase (Lpg0095) From Legionella Pneumophila,
Northeast Structural Genomics Target Lgr1
Length = 470
Score = 213 bits (543), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 139/479 (29%), Positives = 236/479 (49%), Gaps = 39/479 (8%)
Query: 28 IFCSRTLNLRSISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNL-RNMGFP--VEGLAFDP 84
+F +R +N R I IG D D+TL+ YN +E YD L + +P ++ F+
Sbjct: 6 VFVNRIINXRKIKLIGLDXDHTLIRYNSKNFESLVYDLVKERLAESFHYPEEIKKFKFNF 65
Query: 85 DLVIRGLVIDKEKGNLVKADRFGYVKRAMHGTTMLSNRAVSEMYGRELVDLRKESRWEFL 144
D IRGLVID + GN++K R+G ++ + HGT +S ++Y VDL + + +
Sbjct: 66 DDAIRGLVIDSKNGNILKLSRYGAIRLSYHGTKQISFSDQKKIYRSIYVDL-GDPNYXAI 124
Query: 145 NTLFSVSEAVAYMQMVNRLDEGAIGPELGPLDYKGLYKAVGKALFRAHVEGQLKSEIMSK 204
+T FS++ + Y Q+V+ D P+ P Y+ + + V + + H +G LK+ I+
Sbjct: 125 DTSFSIAFCILYGQLVDLKD---TNPDKXP-SYQAIAQDVQYCVDKVHSDGTLKNIIIKN 180
Query: 205 PELFVXXXXXXXXXXXXQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNM 264
+ +V GKK+ ++TNS+Y Y+ ++ ++ + FL W+ LF
Sbjct: 181 LKKYVIREKEVVEGLKHFIRYGKKIFILTNSEYSYSKLLLDYALSPFLDKGEHWQGLFEF 240
Query: 265 VIVSARKPEFFQMSHPLYEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILY 324
VI A KP FF + V G G+Y GG+A+ L + GDEILY
Sbjct: 241 VITLANKPRFFYDNLRFLSVNPENGTXTNVHGPIVPGVYQGGNAKKFTEDLGVGGDEILY 300
Query: 325 VGDHIYTDVSQSKVHLRWRTALICRELEEEYNALINSR------GQRARLVELINQKEVV 378
+GDHIY D+ + K WRTAL+ EL EE + I + G+ + + + QK V
Sbjct: 301 IGDHIYGDILRLKKDCNWRTALVVEELGEEIASQIRALPIEKKIGEAXAIKKELEQKYV- 359
Query: 379 GDXXXXXXXXXXXXXXGHPAQTLAATNMDD--QELTESMQKLLVVMQRLDQKIAPMLESD 436
L ++D+ Q+ + + L + + +D +I+ +L+
Sbjct: 360 ---------------------DLCTRSIDESSQQYDQEIHDLQLQISTVDLQISRLLQEQ 398
Query: 437 GELFNKRWGFLSRAGLWDKSHLMRQIEKYADIYTSRVSNFLHYTPFMYFRSQEQTLAHD 495
+N +W + RAG ++S+ Q++++A IY ++S+ L ++P YFR+ + LAHD
Sbjct: 399 NSFYNPKWERVFRAGA-EESYFAYQVDRFACIYXEKLSDLLEHSPXTYFRANRRLLAHD 456
>pdb|2J2C|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii
(Nt5c2, Cn-Ii)
pdb|2JC9|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii In
Complex With Adenosine
pdb|4H4B|A Chain A, Human Cytosolic 5'-nucleotidase Ii In Complex With
Anthraquinone-2,6- Disulfonic Acid
Length = 555
Score = 175 bits (444), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 144/498 (28%), Positives = 228/498 (45%), Gaps = 61/498 (12%)
Query: 22 RNSPRGIFCSRTLNLRSISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFPVEGLA 81
R + +F +R+L + I G+DMDYTL Y +E ++ + L ++G+P E L+
Sbjct: 48 REAYHRVFVNRSLAMEKIKCFGFDMDYTLAVYKSPEYESLGFELTVERLVSIGYPQELLS 107
Query: 82 F--DPDLVIRGLVIDKEKGNLVKADRFGYVKRAMHGTTMLSNRAVSEMYGRELVDLRKES 139
F D RGLV D GNL+K D +G + HG + E Y + +
Sbjct: 108 FAYDSTFPTRGLVFDTLYGNLLKVDAYGNLLVCAHGFNFIRGPETREQYPNKFIQRDDTE 167
Query: 140 RWEFLNTLFSVSEA------VAYMQMVNRLDEGAIGPELGPL--DYKGLYKAVGKALFRA 191
R+ LNTLF++ E V + R G + G L Y+ +++ V A+
Sbjct: 168 RFYILNTLFNLPETYLLACLVDFFTNCPRYTSCETGFKDGDLFMSYRSMFQDVRDAVDWV 227
Query: 192 HVEGQLKSEIMSKPELFVXXXXXXXXXXXXQKEAGKKLLLITNSDYHYTDKMMQHSFNRF 251
H +G LK + + E +V KE GK + L TNSDY YTDK+M + F+
Sbjct: 228 HYKGSLKEKTVENLEKYVVKDGKLPLLLSRMKEVGK-VFLATNSDYKYTDKIMTYLFD-- 284
Query: 252 LP-------NDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGLMRPCFKARTGGL-- 302
P + W+ F++++V ARKP FF L +V T G ++ TG L
Sbjct: 285 FPHGPKPGSSHRPWQSYFDLILVDARKPLFFGEGTVLRQVDTKTGKLK--IGTYTGPLQH 342
Query: 303 ---YSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICRELEEEYNALI 359
YSGGS+ I + L G +ILY+GDHI+ D+ +SK WRT L+ EL +E +
Sbjct: 343 GIVYSGGSSDTICDLLGAKGKDILYIGDHIFGDILKSKKRQGWRTFLVIPELAQELHVWT 402
Query: 360 NSRGQRARLVELINQKEVVGDXXXXXXXXXXXXXXGHPAQTLAATNMDDQELTESMQKLL 419
+ ++ L E + ++ + L +++ + +++ +++
Sbjct: 403 D----KSSLFEELQSLDIF---------------LAELYKHLDSSSNERPDISSIQRRIK 443
Query: 420 VVMQRLDQKIAPMLESDGELFNKRWGFLSRAGLWDKSHLMRQIEKYADIYTSRVSNFLHY 479
V +D M G LF R G SR L+ Q+ +YAD+Y + N L+Y
Sbjct: 444 KVTHDMDMCYGMM----GSLF--RSG--SRQTLF-----ASQVMRYADLYAASFINLLYY 490
Query: 480 TPFMY-FRSQEQTLAHDS 496
PF Y FR+ + H+S
Sbjct: 491 -PFSYLFRAAHVLMPHES 507
>pdb|2XCV|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii In Complex With Inosine Monophosphate
And 2,3-Bisphosphoglycerate
pdb|2XCW|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Inosine Monophosphate
And Atp
pdb|2XCX|A Chain A, Crystal Structure Of The Apoform Of The D52n Variant Of
Cytosolic 5'- Nucleotidase Ii
pdb|2XJB|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Deoxyguanosine
Monophosphate And Deoxyadenosine Triphosphate
pdb|2XJC|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Guanosine
Monophosphate And Diadenosine Tetraphosphate
pdb|2XJD|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii In Complex With Inorganic Phosphate And
Deoxyadenosine Triphosphate
Length = 554
Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 143/498 (28%), Positives = 228/498 (45%), Gaps = 61/498 (12%)
Query: 22 RNSPRGIFCSRTLNLRSISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFPVEGLA 81
R + +F +R+L + I G++MDYTL Y +E ++ + L ++G+P E L+
Sbjct: 47 REAYHRVFVNRSLAMEKIKCFGFNMDYTLAVYKSPEYESLGFELTVERLVSIGYPQELLS 106
Query: 82 F--DPDLVIRGLVIDKEKGNLVKADRFGYVKRAMHGTTMLSNRAVSEMYGRELVDLRKES 139
F D RGLV D GNL+K D +G + HG + E Y + +
Sbjct: 107 FAYDSTFPTRGLVFDTLYGNLLKVDAYGNLLVCAHGFNFIRGPETREQYPNKFIQRDDTE 166
Query: 140 RWEFLNTLFSVSEA------VAYMQMVNRLDEGAIGPELGPL--DYKGLYKAVGKALFRA 191
R+ LNTLF++ E V + R G + G L Y+ +++ V A+
Sbjct: 167 RFYILNTLFNLPETYLLACLVDFFTNCPRYTSCETGFKDGDLFMSYRSMFQDVRDAVDWV 226
Query: 192 HVEGQLKSEIMSKPELFVXXXXXXXXXXXXQKEAGKKLLLITNSDYHYTDKMMQHSFNRF 251
H +G LK + + E +V KE GK + L TNSDY YTDK+M + F+
Sbjct: 227 HYKGSLKEKTVENLEKYVVKDGKLPLLLSRMKEVGK-VFLATNSDYKYTDKIMTYLFD-- 283
Query: 252 LP-------NDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGLMRPCFKARTGGL-- 302
P + W+ F++++V ARKP FF L +V T G ++ TG L
Sbjct: 284 FPHGPKPGSSHRPWQSYFDLILVDARKPLFFGEGTVLRQVDTKTGKLK--IGTYTGPLQH 341
Query: 303 ---YSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICRELEEEYNALI 359
YSGGS+ I + L G +ILY+GDHI+ D+ +SK WRT L+ EL +E +
Sbjct: 342 GIVYSGGSSDTICDLLGAKGKDILYIGDHIFGDILKSKKRQGWRTFLVIPELAQELHVWT 401
Query: 360 NSRGQRARLVELINQKEVVGDXXXXXXXXXXXXXXGHPAQTLAATNMDDQELTESMQKLL 419
+ ++ L E + ++ + L +++ + +++ +++
Sbjct: 402 D----KSSLFEELQSLDIF---------------LAELYKHLDSSSNERPDISSIQRRIK 442
Query: 420 VVMQRLDQKIAPMLESDGELFNKRWGFLSRAGLWDKSHLMRQIEKYADIYTSRVSNFLHY 479
V +D M G LF R G SR L+ Q+ +YAD+Y + N L+Y
Sbjct: 443 KVTHDMDMCYGMM----GSLF--RSG--SRQTLF-----ASQVMRYADLYAASFINLLYY 489
Query: 480 TPFMY-FRSQEQTLAHDS 496
PF Y FR+ + H+S
Sbjct: 490 -PFSYLFRAAHVLMPHES 506
>pdb|2XJE|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Uridine
5'-Monophosphate And Adenosine Triphosphate
Length = 555
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 143/498 (28%), Positives = 228/498 (45%), Gaps = 61/498 (12%)
Query: 22 RNSPRGIFCSRTLNLRSISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFPVEGLA 81
R + +F +R+L + I G++MDYTL Y +E ++ + L ++G+P E L+
Sbjct: 48 REAYHRVFVNRSLAMEKIKCFGFNMDYTLAVYKSPEYESLGFELTVERLVSIGYPQELLS 107
Query: 82 F--DPDLVIRGLVIDKEKGNLVKADRFGYVKRAMHGTTMLSNRAVSEMYGRELVDLRKES 139
F D RGLV D GNL+K D +G + HG + E Y + +
Sbjct: 108 FAYDSTFPTRGLVFDTLYGNLLKVDAYGNLLVCAHGFNFIRGPETREQYPNKFIQRDDTE 167
Query: 140 RWEFLNTLFSVSEA------VAYMQMVNRLDEGAIGPELGPL--DYKGLYKAVGKALFRA 191
R+ LNTLF++ E V + R G + G L Y+ +++ V A+
Sbjct: 168 RFYILNTLFNLPETYLLACLVDFFTNCPRYTSCETGFKDGDLFMSYRSMFQDVRDAVDWV 227
Query: 192 HVEGQLKSEIMSKPELFVXXXXXXXXXXXXQKEAGKKLLLITNSDYHYTDKMMQHSFNRF 251
H +G LK + + E +V KE GK + L TNSDY YTDK+M + F+
Sbjct: 228 HYKGSLKEKTVENLEKYVVKDGKLPLLLSRMKEVGK-VFLATNSDYKYTDKIMTYLFD-- 284
Query: 252 LP-------NDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGLMRPCFKARTGGL-- 302
P + W+ F++++V ARKP FF L +V T G ++ TG L
Sbjct: 285 FPHGPKPGSSHRPWQSYFDLILVDARKPLFFGEGTVLRQVDTKTGKLK--IGTYTGPLQH 342
Query: 303 ---YSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICRELEEEYNALI 359
YSGGS+ I + L G +ILY+GDHI+ D+ +SK WRT L+ EL +E +
Sbjct: 343 GIVYSGGSSDTICDLLGAKGKDILYIGDHIFGDILKSKKRQGWRTFLVIPELAQELHVWT 402
Query: 360 NSRGQRARLVELINQKEVVGDXXXXXXXXXXXXXXGHPAQTLAATNMDDQELTESMQKLL 419
+ ++ L E + ++ + L +++ + +++ +++
Sbjct: 403 D----KSSLFEELQSLDIF---------------LAELYKHLDSSSNERPDISSIQRRIK 443
Query: 420 VVMQRLDQKIAPMLESDGELFNKRWGFLSRAGLWDKSHLMRQIEKYADIYTSRVSNFLHY 479
V +D M G LF R G SR L+ Q+ +YAD+Y + N L+Y
Sbjct: 444 KVTHDMDMCYGMM----GSLF--RSG--SRQTLF-----ASQVMRYADLYAASFINLLYY 490
Query: 480 TPFMY-FRSQEQTLAHDS 496
PF Y FR+ + H+S
Sbjct: 491 -PFSYLFRAAHVLMPHES 507
>pdb|2JCM|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii In
Complex With Beryllium Trifluoride
pdb|2XJF|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii With A Covalently Modified Asn52
Length = 555
Score = 172 bits (436), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 143/498 (28%), Positives = 227/498 (45%), Gaps = 61/498 (12%)
Query: 22 RNSPRGIFCSRTLNLRSISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFPVEGLA 81
R + +F +R+L + I G+ MDYTL Y +E ++ + L ++G+P E L+
Sbjct: 48 REAYHRVFVNRSLAMEKIKCFGFXMDYTLAVYKSPEYESLGFELTVERLVSIGYPQELLS 107
Query: 82 F--DPDLVIRGLVIDKEKGNLVKADRFGYVKRAMHGTTMLSNRAVSEMYGRELVDLRKES 139
F D RGLV D GNL+K D +G + HG + E Y + +
Sbjct: 108 FAYDSTFPTRGLVFDTLYGNLLKVDAYGNLLVCAHGFNFIRGPETREQYPNKFIQRDDTE 167
Query: 140 RWEFLNTLFSVSEA------VAYMQMVNRLDEGAIGPELGPL--DYKGLYKAVGKALFRA 191
R+ LNTLF++ E V + R G + G L Y+ +++ V A+
Sbjct: 168 RFYILNTLFNLPETYLLACLVDFFTNCPRYTSCETGFKDGDLFMSYRSMFQDVRDAVDWV 227
Query: 192 HVEGQLKSEIMSKPELFVXXXXXXXXXXXXQKEAGKKLLLITNSDYHYTDKMMQHSFNRF 251
H +G LK + + E +V KE GK + L TNSDY YTDK+M + F+
Sbjct: 228 HYKGSLKEKTVENLEKYVVKDGKLPLLLSRMKEVGK-VFLATNSDYKYTDKIMTYLFD-- 284
Query: 252 LP-------NDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGLMRPCFKARTGGL-- 302
P + W+ F++++V ARKP FF L +V T G ++ TG L
Sbjct: 285 FPHGPKPGSSHRPWQSYFDLILVDARKPLFFGEGTVLRQVDTKTGKLK--IGTYTGPLQH 342
Query: 303 ---YSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICRELEEEYNALI 359
YSGGS+ I + L G +ILY+GDHI+ D+ +SK WRT L+ EL +E +
Sbjct: 343 GIVYSGGSSDTICDLLGAKGKDILYIGDHIFGDILKSKKRQGWRTFLVIPELAQELHVWT 402
Query: 360 NSRGQRARLVELINQKEVVGDXXXXXXXXXXXXXXGHPAQTLAATNMDDQELTESMQKLL 419
+ ++ L E + ++ + L +++ + +++ +++
Sbjct: 403 D----KSSLFEELQSLDIF---------------LAELYKHLDSSSNERPDISSIQRRIK 443
Query: 420 VVMQRLDQKIAPMLESDGELFNKRWGFLSRAGLWDKSHLMRQIEKYADIYTSRVSNFLHY 479
V +D M G LF R G SR L+ Q+ +YAD+Y + N L+Y
Sbjct: 444 KVTHDMDMCYGMM----GSLF--RSG--SRQTLF-----ASQVMRYADLYAASFINLLYY 490
Query: 480 TPFMY-FRSQEQTLAHDS 496
PF Y FR+ + H+S
Sbjct: 491 -PFSYLFRAAHVLMPHES 507
>pdb|4F5K|A Chain A, Substrate Specificity Conversion Of Aspartate
Aminotransferase To Tyrosine Aminotransferase By The
Janus Algorithm: Chimera P6.
pdb|4F5K|B Chain B, Substrate Specificity Conversion Of Aspartate
Aminotransferase To Tyrosine Aminotransferase By The
Janus Algorithm: Chimera P6
Length = 406
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 92 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 144
+D+ G + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 277 TVDRAFGQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 336
Query: 145 NTL 147
NTL
Sbjct: 337 NTL 339
>pdb|1TOJ|A Chain A, Hydrocinnamic Acid-Bound Structure Of Srhept Mutant Of E.
Coli Aspartate Aminotransferase
pdb|1TOK|A Chain A, Maleic Acid-bound Structure Of Srhept Mutant Of E. Coli
Aspartate Aminotransferase
pdb|1TOK|B Chain B, Maleic Acid-bound Structure Of Srhept Mutant Of E. Coli
Aspartate Aminotransferase
Length = 396
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 92 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 144
+D+ G + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFGQMKAAIRANYSSPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 145 NTL 147
NTL
Sbjct: 327 NTL 329
>pdb|4F5G|A Chain A, Rational Design And Directed Evolution Of E. Coli Apartate
Aminotransferase To Tyrosine Aminotransferase: Mutant
P2.
pdb|4F5G|B Chain B, Rational Design And Directed Evolution Of E. Coli Apartate
Aminotransferase To Tyrosine Aminotransferase: Mutant P2
Length = 406
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 92 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 144
+D+ G + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 277 TVDRAFGQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 336
Query: 145 NTL 147
NTL
Sbjct: 337 NTL 339
>pdb|1VBR|A Chain A, Crystal Structure Of Complex Xylanase 10b From Thermotoga
Maritima With Xylobiose
pdb|1VBR|B Chain B, Crystal Structure Of Complex Xylanase 10b From Thermotoga
Maritima With Xylobiose
pdb|1VBU|A Chain A, Crystal Structure Of Native Xylanase 10b From Thermotoga
Maritima
pdb|1VBU|B Chain B, Crystal Structure Of Native Xylanase 10b From Thermotoga
Maritima
Length = 328
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 24/147 (16%)
Query: 47 DYTLMHYNVMAWEGRAYDYCMVN-LRNMGFPVEGLAFDPDLVIRGLVIDKEKGNLVKADR 105
DY++ N + + Y M+ L+ G PV+G+ F + RGL D + NL +R
Sbjct: 176 DYSIEEINAKS----NFVYNMIKELKEKGVPVDGIGFQMHIDYRGLNYDSFRRNL---ER 228
Query: 106 FGYVKRAMHGTTMLSNRAVSEMYGRELVDLRKESRWEFLNTLFSV---SEAVAYMQMVNR 162
F + ++ T M +S G E L+K++ E +F + + AV +Q
Sbjct: 229 FAKLGLQIYITEMDVRIPLS---GSEEYYLKKQA--EVCAKIFDICLDNPAVKAIQFWGF 283
Query: 163 LDEGAIGPELGPLDYKGLYKAVGKALF 189
D+ + P G +K GKAL
Sbjct: 284 TDKYSWVP--------GFFKGYGKALL 302
>pdb|3NIY|A Chain A, Crystal Structure Of Native Xylanase 10b From Thermotoga
Petrophila Rku-1
pdb|3NIY|B Chain B, Crystal Structure Of Native Xylanase 10b From Thermotoga
Petrophila Rku-1
pdb|3NJ3|A Chain A, Crystal Structure Of Xylanase 10b From Thermotoga
Petrophila Rku-1 In Complex With Xylobiose
pdb|3NJ3|B Chain B, Crystal Structure Of Xylanase 10b From Thermotoga
Petrophila Rku-1 In Complex With Xylobiose
Length = 341
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 24/146 (16%)
Query: 47 DYTLMHYNVMAWEGRAYDYCMVN-LRNMGFPVEGLAFDPDLVIRGLVIDKEKGNLVKADR 105
DY++ N + + Y M+ L+ G PV+G+ F + RGL D + NL +R
Sbjct: 192 DYSIEEINAKS----NFVYNMIKELKEKGVPVDGIGFQMHIDYRGLNYDSFRRNL---ER 244
Query: 106 FGYVKRAMHGTTMLSNRAVSEMYGRELVDLRKESRWEFLNTLFSV---SEAVAYMQMVNR 162
F + ++ T M +S G E L+K++ E +F + + AV +Q
Sbjct: 245 FAKLGLQIYITEMDVRIPLS---GSEDYYLKKQA--EICAKIFDICLDNPAVKAIQFWGF 299
Query: 163 LDEGAIGPELGPLDYKGLYKAVGKAL 188
D+ + P G +K GKAL
Sbjct: 300 TDKYSWVP--------GFFKGYGKAL 317
>pdb|1TOG|A Chain A, Hydrocinnamic Acid-Bound Structure Of Srhept + A293d
Mutant Of E. Coli Aspartate Aminotransferase
pdb|1TOG|B Chain B, Hydrocinnamic Acid-Bound Structure Of Srhept + A293d
Mutant Of E. Coli Aspartate Aminotransferase
Length = 396
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 92 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 144
+D+ G + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFGQMKAAIRDNYSSPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 145 NTL 147
NTL
Sbjct: 327 NTL 329
>pdb|2D61|A Chain A, Aspartate Aminotransferase Mutant Ma With Maleic Acid
pdb|2D63|A Chain A, Aspartate Aminotransferase Mutant Ma With Isovaleric Acid
pdb|2D7Y|A Chain A, Aspartate Aminotransferase Mutant Ma
Length = 396
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 92 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 144
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRVNYSSPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 145 NTL 147
NTL
Sbjct: 327 NTL 329
>pdb|2D66|A Chain A, Aspartate Aminotransferase Mutant Mab
pdb|2D7Z|A Chain A, Aspartate Aminotransferase Mutant Mab Complexed With
Maleic Acid
Length = 396
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 92 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 144
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRVNYSSPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 145 NTL 147
NTL
Sbjct: 327 NTL 329
>pdb|2D64|A Chain A, Aspartate Aminotransferase Mutant Mabc With Isovaleric
Acid
pdb|2D65|A Chain A, Aspartate Aminotransferase Mutant Mabc
Length = 396
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 92 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 144
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRVNYSSPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 145 NTL 147
NTL
Sbjct: 327 NTL 329
>pdb|2D5Y|A Chain A, Aspartate Aminotransferase Mutant Mc With Isovaleric Acid
Length = 396
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 92 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 144
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRVNYSSPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 145 NTL 147
NTL
Sbjct: 327 NTL 329
>pdb|1AHY|A Chain A, Aspartate Aminotransferase Hexamutant
pdb|1AHY|B Chain B, Aspartate Aminotransferase Hexamutant
pdb|1AHX|A Chain A, Aspartate Aminotransferase Hexamutant
pdb|1AHX|B Chain B, Aspartate Aminotransferase Hexamutant
pdb|1AHG|A Chain A, Aspartate Aminotransferase Hexamutant
pdb|1AHG|B Chain B, Aspartate Aminotransferase Hexamutant
pdb|1AHF|A Chain A, Aspartate Aminotransferase Hexamutant
pdb|1AHF|B Chain B, Aspartate Aminotransferase Hexamutant
pdb|1AHE|A Chain A, Aspartate Aminotransferase Hexamutant
pdb|1AHE|B Chain B, Aspartate Aminotransferase Hexamutant
Length = 396
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 92 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 144
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSSPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 145 NTL 147
NTL
Sbjct: 327 NTL 329
>pdb|1IX8|A Chain A, Aspartate Aminotransferase Active Site Mutant V39fN194A
Length = 396
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 92 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 144
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 145 NTL 147
NTL
Sbjct: 327 NTL 329
>pdb|1ARI|A Chain A, Aspartate Aminotransferase, W140h Mutant, Maleate Complex
pdb|1ARI|B Chain B, Aspartate Aminotransferase, W140h Mutant, Maleate Complex
Length = 396
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 92 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 144
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 145 NTL 147
NTL
Sbjct: 327 NTL 329
>pdb|1AIA|A Chain A, Structural Basis For The Catalytic Activity Of Aspartate
Aminotransferase K258h Lacking The
Pyridoxal-5'-Phosphate Binding Lysine Residue
pdb|1AIA|B Chain B, Structural Basis For The Catalytic Activity Of Aspartate
Aminotransferase K258h Lacking The
Pyridoxal-5'-Phosphate Binding Lysine Residue
pdb|1AIB|A Chain A, Structural Basis For The Catalytic Activity Of Aspartate
Aminotransferase K258h Lacking The
Pyridoxal-5'-Phosphate Binding Lysine Residue
pdb|1AIB|B Chain B, Structural Basis For The Catalytic Activity Of Aspartate
Aminotransferase K258h Lacking The
Pyridoxal-5'-Phosphate Binding Lysine Residue
pdb|1AIC|A Chain A, Structural Basis For The Catalytic Activity Of Aspartate
Aminotransferase K258h Lacking The
Pyridoxal-5'-Phosphate Binding Lysine Residue
pdb|1AIC|B Chain B, Structural Basis For The Catalytic Activity Of Aspartate
Aminotransferase K258h Lacking The
Pyridoxal-5'-Phosphate Binding Lysine Residue
Length = 396
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 92 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 144
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 145 NTL 147
NTL
Sbjct: 327 NTL 329
>pdb|4F5I|A Chain A, Substrate Specificity Conversion Of E. Coli
Pyridoxal-5'-phosphate Dependent Aspartate
Aminotransferase To Tyrosine Aminotransferase: Chimera
P4.
pdb|4F5I|B Chain B, Substrate Specificity Conversion Of E. Coli
Pyridoxal-5'-phosphate Dependent Aspartate
Aminotransferase To Tyrosine Aminotransferase: Chimera
P4
Length = 406
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 92 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 144
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 277 TVDRAFSQMKAAIRANYSSPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 336
Query: 145 NTL 147
NTL
Sbjct: 337 NTL 339
>pdb|1G7W|A Chain A, Aspartate Aminotransferase Active Site Mutant N194aR386L
Length = 396
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 92 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 144
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 145 NTL 147
NTL
Sbjct: 327 NTL 329
>pdb|1ASB|A Chain A, The Structural Basis For The Reduced Activity Of The
D223a(D222a) Active Site Mutant Of E. Coli Aspartate
Aminotransferase
pdb|1ASC|A Chain A, The Structural Basis For The Reduced Activity Of The
D223a(D222a) Active Site Mutant Of E. Coli Aspartate
Aminotransferase
pdb|1SPA|A Chain A, Role Of Asp222 In The Catalytic Mechanism Of Escherichia
Coli Aspartate Aminotransferase: The Amino Acid Residue
Which Enhances The Function Of The Enzyme-Bound Coenzyme
Pyridoxal 5'-Phosphate
Length = 396
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 92 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 144
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 145 NTL 147
NTL
Sbjct: 327 NTL 329
>pdb|2AAT|A Chain A, 2.8-Angstroms-Resolution Crystal Structure Of An
Active-Site Mutant Of Aspartate Aminotransferase From
Escherichia Coli
pdb|4DBC|A Chain A, Substrate Activation In Aspartate Aminotransferase
Length = 396
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 92 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 144
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 145 NTL 147
NTL
Sbjct: 327 NTL 329
>pdb|2Q7W|A Chain A, Structural Studies Reveals The Inactivation Of E. Coli
L-Aspartate Aminotransferase
(S)-4,5-Amino-Dihydro-2-Thiophenecarboxylic Acid (Sadta)
Via Two Mechanisms At Ph 6.0
pdb|2QBT|A Chain A, Structural Studies Reveal The Inactivation Of E. Coli
L-Aspartate Aminotransferase By
(S)-4,5-Amino-Dihydro-2-Thiophenecarboxylic Acid (Sadta)
Via Two Mechanisms (At Ph 8.0)
pdb|2QA3|A Chain A, Structural Studies Reveal The Inactivation Of E. Coli
L-Aspartate Aminotransferase By
(S)-4,5-Amino-Dihydro-2-Thiophenecarboxylic Acid (Sadta)
Via Two Mechanisms (At Ph6.5)
pdb|2QB2|A Chain A, Structural Studies Reveal The Inactivation Of E. Coli
L-Aspartate Aminotransferase By
(S)-4,5-Dihydro-2thiophenecarboylic Acid (Sadta) Via Two
Mechanisms (At Ph 7.0).
pdb|2QB3|A Chain A, Structural Studies Reveal The Inactivation Of E. Coli
L-aspartate Aminotransferase By
(s)-4,5-dihydro-2-thiophenecarboxylic Acid (sadta) Via
Two Mechanisms (at Ph 7.5)
pdb|3QN6|A Chain A, Crystal Structures Of Escherichia Coli Aspartate
Aminotransferase Reconstituted With 1-Deaza-Pyridoxal
5'-Phosphate: Internal Aldimine And Stable L-Aspartate
External Aldimine
Length = 396
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 92 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 144
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 145 NTL 147
NTL
Sbjct: 327 NTL 329
>pdb|1ARH|A Chain A, Aspartate Aminotransferase, Y225rR386A MUTANT
pdb|1ARH|B Chain B, Aspartate Aminotransferase, Y225rR386A MUTANT
Length = 396
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 92 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 144
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 145 NTL 147
NTL
Sbjct: 327 NTL 329
>pdb|1G4V|A Chain A, Aspartate Aminotransferase Active Site Mutant N194a/y225f
Length = 396
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 92 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 144
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 145 NTL 147
NTL
Sbjct: 327 NTL 329
>pdb|1IX6|A Chain A, Aspartate Aminotransferase Active Site Mutant V39f
pdb|1IX7|A Chain A, Aspartate Aminotransferase Active Site Mutant V39f Maleate
Complex
Length = 396
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 92 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 144
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 145 NTL 147
NTL
Sbjct: 327 NTL 329
>pdb|1ASL|A Chain A, Crystal Structures Of Escherichia Coli Aspartate
Aminotransferase In Two Conformations: Comparison Of An
Unliganded Open And Two Liganded Closed Forms
pdb|1ASL|B Chain B, Crystal Structures Of Escherichia Coli Aspartate
Aminotransferase In Two Conformations: Comparison Of An
Unliganded Open And Two Liganded Closed Forms
pdb|1ASM|A Chain A, Crystal Structures Of Escherichia Coli Aspartate
Aminotransferase In Two Conformations: Comparison Of An
Unliganded Open And Two Liganded Closed Forms
pdb|1ASM|B Chain B, Crystal Structures Of Escherichia Coli Aspartate
Aminotransferase In Two Conformations: Comparison Of An
Unliganded Open And Two Liganded Closed Forms
pdb|1ASN|A Chain A, Crystal Structures Of Escherichia Coli Aspartate
Aminotransferase In Two Conformations: Comparison Of An
Unliganded Open And Two Liganded Closed Forms
pdb|1ASN|B Chain B, Crystal Structures Of Escherichia Coli Aspartate
Aminotransferase In Two Conformations: Comparison Of An
Unliganded Open And Two Liganded Closed Forms
pdb|1ARG|A Chain A, Aspartate Aminotransferase, Phospho-5'-Pyridoxyl Aspartate
Complex
pdb|1ARG|B Chain B, Aspartate Aminotransferase, Phospho-5'-Pyridoxyl Aspartate
Complex
pdb|1C9C|A Chain A, Aspartate Aminotransferase Complexed With
C3-Pyridoxal-5'-Phosphate
pdb|1CQ6|A Chain A, Aspartate Aminotransferase Complex With
C4-Pyridoxal-5p-Phosphate
pdb|1CQ7|A Chain A, Aspartate Aminotransferase (E.C. 2.6.1.1) Complexed With
C5-Pyridoxal- 5p-Phosphate
pdb|1CQ8|A Chain A, Aspartate Aminotransferase (E.C. 2.6.1.1) Complexed With
C6-Pyridoxal- 5p-Phosphate
pdb|1X28|A Chain A, Crystal Structure Of E.Coli Aspat Complexed With N-
Phosphopyridoxyl-L-Glutamic Acid
pdb|1X28|B Chain B, Crystal Structure Of E.Coli Aspat Complexed With N-
Phosphopyridoxyl-L-Glutamic Acid
pdb|1X29|A Chain A, Crystal Structure Of E.Coli Aspat Complexed With N-
Phosphopyridoxyl-2-Methyl-L-Glutamic Acid
pdb|1X29|B Chain B, Crystal Structure Of E.Coli Aspat Complexed With N-
Phosphopyridoxyl-2-Methyl-L-Glutamic Acid
pdb|1X2A|A Chain A, Crystal Structure Of E.Coli Aspat Complexed With N-
Phosphopyridoxyl-D-Glutamic Acid
pdb|1X2A|B Chain B, Crystal Structure Of E.Coli Aspat Complexed With N-
Phosphopyridoxyl-D-Glutamic Acid
pdb|1AAW|A Chain A, The Structural Basis For The Altered Substrate Specificity
Of The R292d Active Site Mutant Of Aspartate
Aminotransferase From E. Coli
pdb|1AMQ|A Chain A, X-Ray Crystallographic Study Of Pyridoxamine
5'-Phosphate-Type Aspartate Aminotransferases From
Escherichia Coli In Three Forms
pdb|1AMR|A Chain A, X-Ray Crystallographic Study Of Pyridoxamine
5'-Phosphate-Type Aspartate Aminotransferases From
Escherichia Coli In Three Forms
pdb|1AMS|A Chain A, X-Ray Crystallographic Study Of Pyridoxamine
5'-Phosphate-Type Aspartate Aminotransferases From
Escherichia Coli In Three Forms
pdb|1ARS|A Chain A, X-ray Crystallographic Study Of Pyridoxal
5'-phosphate-type Aspartate Aminotransferases From
Escherichia Coli In Open And Closed Form
pdb|1ART|A Chain A, X-ray Crystallographic Study Of Pyridoxal
5'-phosphate-type Aspartate Aminotransferases From
Escherichia Coli In Open And Closed Form
pdb|1ASA|A Chain A, The Structural Basis For The Reduced Activity Of The
Y226f(Y225f) Active Site Mutant Of E. Coli Aspartate
Aminotransferase
pdb|1ASD|A Chain A, The Structure Of Wild Type E. Coli Aspartate
Aminotransferase Reconstituted With N-Meplp
pdb|1ASE|A Chain A, The Structure Of Wild Type E. Coli Aspartate
Aminotransferase Reconstituted With Plp-N-Oxide
pdb|3PA9|A Chain A, Mechanism Of Inactivation Of E. Coli Aspartate
Aminotransferase By
(S)-4-Amino-4,5-Dihydro-2-Furancarboxylic Acid (S-Adfa)
Ph 7.5
pdb|3PAA|A Chain A, Mechanism Of Inactivation Of E. Coli Aspartate
Aminotransferase By
(S)-4-Amino-4,5-Dihydro-2-Furancarboxylic Acid (S-Adfa)
Ph 8.0
pdb|3QPG|A Chain A, Crystal Structures Of Escherichia Coli Aspartate
Aminotransferase Reconstituted With 1-Deaza-Pyridoxal
5'-Phosphate: Internal Aldimine And Stable L-Aspartate
External Aldimine
Length = 396
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 92 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 144
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 145 NTL 147
NTL
Sbjct: 327 NTL 329
>pdb|1B4X|A Chain A, Aspartate Aminotransferase From E. Coli, C191s Mutation,
With Bound Maleate
pdb|5EAA|A Chain A, Aspartate Aminotransferase From E. Coli, C191s Mutation
Length = 396
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 92 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 144
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 145 NTL 147
NTL
Sbjct: 327 NTL 329
>pdb|3AAT|A Chain A, Activity And Structure Of The Active-Site Mutants R386y
And R386f Of Escherichia Coli Aspartate Aminotransferase
Length = 396
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 92 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 144
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 145 NTL 147
NTL
Sbjct: 327 NTL 329
>pdb|4F5J|A Chain A, Rational Design And Directed Evolution For Conversion Of
Substrate Specificity From E.coli Aspartate
Aminotransferase To Tyrosine Aminotransferase: Mutant
P5.
pdb|4F5J|B Chain B, Rational Design And Directed Evolution For Conversion Of
Substrate Specificity From E.coli Aspartate
Aminotransferase To Tyrosine Aminotransferase: Mutant P5
Length = 406
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 92 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 144
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 277 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 336
Query: 145 NTL 147
NTL
Sbjct: 337 NTL 339
>pdb|1ASF|A Chain A, The Structural Basis For The Reduced Activity Of The
Y226f(Y225f) Active Site Mutant Of E. Coli Aspartate
Aminotransferase
pdb|1ASG|A Chain A, The Structural Basis For The Reduced Activity Of The
Y226f(Y225f) Active Site Mutant Of E. Coli Aspartate
Aminotransferase
Length = 396
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 92 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 144
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 145 NTL 147
NTL
Sbjct: 327 NTL 329
>pdb|1BQA|A Chain A, Aspartate Aminotransferase P195a Mutant
pdb|1BQA|B Chain B, Aspartate Aminotransferase P195a Mutant
Length = 396
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 92 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 144
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 145 NTL 147
NTL
Sbjct: 327 NTL 329
>pdb|1QIR|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191y
Mutation, With Bound Maleate
Length = 396
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 92 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 144
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 145 NTL 147
NTL
Sbjct: 327 NTL 329
>pdb|1QIS|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191f
Mutation, With Bound Maleate
Length = 396
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 92 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 144
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 145 NTL 147
NTL
Sbjct: 327 NTL 329
>pdb|4F5M|A Chain A, Wild-type E. Coli Aspartate Aminotransferase: A Template
For The Interconversion Of Substrate Specificity And
Activity To Tyrosine Aminotransferase By The Janus
Algorithm.
pdb|4F5M|B Chain B, Wild-type E. Coli Aspartate Aminotransferase: A Template
For The Interconversion Of Substrate Specificity And
Activity To Tyrosine Aminotransferase By The Janus
Algorithm
Length = 406
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 92 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 144
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 277 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 336
Query: 145 NTL 147
NTL
Sbjct: 337 NTL 339
>pdb|4F5F|A Chain A, Structure Of Aspartate Aminotransferase Conversion To
Tyrosine Aminotransferase: Chimera P1.
pdb|4F5F|B Chain B, Structure Of Aspartate Aminotransferase Conversion To
Tyrosine Aminotransferase: Chimera P1
Length = 406
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 92 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 144
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 277 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 336
Query: 145 NTL 147
NTL
Sbjct: 337 NTL 339
>pdb|1QIT|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191w
Mutation, With Bound Maleate
Length = 396
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 92 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 144
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 145 NTL 147
NTL
Sbjct: 327 NTL 329
>pdb|4F5H|A Chain A, Intercoversion Of Substrate Specificity: E. Coli Aspatate
Aminotransferase To Tyrosine Aminotransferase: Chimera
P3.
pdb|4F5H|B Chain B, Intercoversion Of Substrate Specificity: E. Coli Aspatate
Aminotransferase To Tyrosine Aminotransferase: Chimera
P3
Length = 406
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 92 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLRKES---RWEFL 144
+D+ + A R Y HG T+LSN A+ ++ +EL D+R+ R F+
Sbjct: 277 TVDRAFSQMKAAIRANYSSPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRLRQLFV 336
Query: 145 NTL 147
NTL
Sbjct: 337 NTL 339
>pdb|1BQD|A Chain A, Aspartate Aminotransferase P138aP195A DOUBLE MUTANT
pdb|1BQD|B Chain B, Aspartate Aminotransferase P138aP195A DOUBLE MUTANT
Length = 396
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 92 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 144
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 145 NTL 147
NTL
Sbjct: 327 NTL 329
>pdb|1TOE|A Chain A, Unliganded Structure Of Hexamutant + A293d Mutant Of E.
Coli Aspartate Aminotransferase
pdb|1TOI|A Chain A, Hydrocinnamic Acid-Bound Structure Of Hexamutant + A293d
Mutant Of E. Coli Aspartate Aminotransferase
Length = 396
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 92 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 144
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRDNYSSPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 145 NTL 147
NTL
Sbjct: 327 NTL 329
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,366,592
Number of Sequences: 62578
Number of extensions: 569045
Number of successful extensions: 1329
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1294
Number of HSP's gapped (non-prelim): 46
length of query: 515
length of database: 14,973,337
effective HSP length: 103
effective length of query: 412
effective length of database: 8,527,803
effective search space: 3513454836
effective search space used: 3513454836
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)