BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010219
         (515 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1VYX|A Chain A, Solution Structure Of The Kshv K3 N-Terminal Domain
          Length = 60

 Score = 46.6 bits (109), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 7/59 (11%)

Query: 268 DGEDIPEEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVC 326
           + ED+P    VC IC  EL  G E F+  C C GEL   H+ C   W T+  N  C +C
Sbjct: 2   EDEDVP----VCWICNEEL--GNERFR-ACGCTGELENVHRSCLSTWLTISRNTACQIC 53


>pdb|2D8S|A Chain A, Solution Structure Of The Ring Domain Of The Human
           Cellular Modulator Of Immune Recognition Protein
          Length = 80

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 273 PEEEAVCRICLVELCEGGETFKM--ECSCKGELALAHKECAIKWFTMKGNKTCDVCKQE 329
           P  + +CRIC    CEG +   +   C C G L   H+ C  +W      + C++CK E
Sbjct: 12  PSSQDICRICH---CEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYE 67


>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
          Length = 69

 Score = 32.3 bits (72), Expect = 0.62,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 7/53 (13%)

Query: 279 CRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQ 331
           C ICL  L EG +  ++ C     + L H+ C  +W     NK C +C+ +++
Sbjct: 17  CTICLSILEEGEDVRRLPC-----MHLFHQVCVDQWLIT--NKKCPICRVDIE 62


>pdb|2X7J|A Chain A, Structure Of The Menaquinone Biosynthesis Protein Mend
           From Bacillus Subtilis
 pdb|2X7J|B Chain B, Structure Of The Menaquinone Biosynthesis Protein Mend
           From Bacillus Subtilis
 pdb|2X7J|C Chain C, Structure Of The Menaquinone Biosynthesis Protein Mend
           From Bacillus Subtilis
 pdb|2X7J|D Chain D, Structure Of The Menaquinone Biosynthesis Protein Mend
           From Bacillus Subtilis
          Length = 604

 Score = 30.8 bits (68), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 9/75 (12%)

Query: 329 EVQNLPVTLLRIQSTRFRNGARGQLSDLNGYRVWQEVPVLVIVSMLAYFCFLEQLLVAKM 388
           E Q+ P    RI S R  NG  G +S   G     + PV +++  L+++  L  LL AK 
Sbjct: 440 EKQDRP---FRIYSNRGANGIDGVVSSAMGVCEGTKAPVTLVIGDLSFYHDLNGLLAAK- 495

Query: 389 GTGAIAISLPFSCVL 403
                 + +P + +L
Sbjct: 496 -----KLGIPLTVIL 505


>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
           Protein 24
          Length = 74

 Score = 29.3 bits (64), Expect = 6.1,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 22/66 (33%)

Query: 278 VCRICLVELCEGGETFKME-----CSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQN 332
           +C +CL       E FK       C CK      H++C IKW  ++  K C +C     N
Sbjct: 17  LCAVCL-------EDFKPRDELGICPCKHAF---HRKCLIKWLEVR--KVCPLC-----N 59

Query: 333 LPVTLL 338
           +PV  L
Sbjct: 60  MPVLQL 65


>pdb|3K1L|B Chain B, Crystal Structure Of Fancl
 pdb|3K1L|A Chain A, Crystal Structure Of Fancl
          Length = 381

 Score = 28.5 bits (62), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 12/76 (15%)

Query: 267 ADGEDIPEE---EAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWF-TMKGNKT 322
           +DG  + EE   E  C IC     +GGE   + C     +   H  C  +WF T+   KT
Sbjct: 296 SDGPKLDEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKT 355

Query: 323 --------CDVCKQEV 330
                   C  CK ++
Sbjct: 356 FLEVSFGQCPFCKAKL 371


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.133    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,043,194
Number of Sequences: 62578
Number of extensions: 425266
Number of successful extensions: 733
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 729
Number of HSP's gapped (non-prelim): 7
length of query: 515
length of database: 14,973,337
effective HSP length: 103
effective length of query: 412
effective length of database: 8,527,803
effective search space: 3513454836
effective search space used: 3513454836
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)