BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010219
(515 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5XI50|MARH7_RAT E3 ubiquitin-protein ligase MARCH7 OS=Rattus norvegicus GN=March7
PE=2 SV=1
Length = 692
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Query: 278 VCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNK--------TCDVCKQE 329
+CRIC + C C G L H+EC KW K N TC++CK++
Sbjct: 552 LCRICQMAAASSSNLLIEPCKCTGSLQYVHQECMKKWLQAKINSGSSLEAVTTCELCKEK 611
Query: 330 VQ 331
+Q
Sbjct: 612 LQ 613
>sp|Q9WV66|MARH7_MOUSE E3 ubiquitin-protein ligase MARCH7 OS=Mus musculus GN=March7 PE=2
SV=1
Length = 693
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 279 CRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNK--------TCDVCKQEV 330
CRIC + C C G L H+EC KW K N TC++CK+++
Sbjct: 554 CRICQMAAASSSNLLIEPCKCTGSLQYVHQECMKKWLQAKINSGSSLEAVTTCELCKEKL 613
Query: 331 Q 331
Q
Sbjct: 614 Q 614
>sp|P90495|MIR1_HHV8P E3 ubiquitin-protein ligase MIR1 OS=Human herpesvirus 8 type P
(isolate GK18) GN=K3 PE=1 SV=1
Length = 333
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 270 EDIPEEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVC 326
ED+P VC IC EL G E F+ C C GEL H+ C W T+ N C +C
Sbjct: 4 EDVP----VCWICNEEL--GNERFRA-CGCTGELENVHRSCLSTWLTISRNTACQIC 53
>sp|P40318|DOA10_YEAST ERAD-associated E3 ubiquitin-protein ligase DOA10 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SSM4 PE=1
SV=1
Length = 1319
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 258 QIVDTENNDADGEDIPEEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTM 317
++ + E + A D A CRIC E E F C C+G + H+ C ++W
Sbjct: 18 KVANEETDTATFNDDAPSGATCRICRGEATEDNPLFH-PCKCRGSIKYMHESCLLEWVAS 76
Query: 318 K--------GNKTCDVCKQEVQ 331
K + CD+C +Q
Sbjct: 77 KNIDISKPGADVKCDICHYPIQ 98
>sp|Q9H992|MARH7_HUMAN E3 ubiquitin-protein ligase MARCH7 OS=Homo sapiens GN=MARCH7 PE=1
SV=1
Length = 704
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 279 CRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNK--------TCDVCKQEV 330
CRIC + C C G L H++C KW K N TC++CK+++
Sbjct: 552 CRICQMAAASSSNLLIEPCKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTCELCKEKL 611
Query: 331 Q 331
+
Sbjct: 612 E 612
>sp|Q5R9W2|MARH7_PONAB E3 ubiquitin-protein ligase MARCH7 OS=Pongo abelii GN=MARCH7 PE=2
SV=1
Length = 707
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 279 CRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNK--------TCDVCKQEV 330
CRIC + C C G L H++C KW K N TC++CK+++
Sbjct: 552 CRICQMAAASSSNLLIEPCKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTCELCKEKL 611
Query: 331 Q 331
+
Sbjct: 612 E 612
>sp|Q5XIV2|MARHA_RAT Probable E3 ubiquitin-protein ligase MARCH10 OS=Rattus norvegicus
GN=March10 PE=2 SV=1
Length = 790
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 279 CRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGN--------KTCDVCKQ 328
CRIC + C C G L H+EC KW +K KTC++CKQ
Sbjct: 641 CRICQIAGGSPANPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLSTVKTCEMCKQ 698
>sp|Q3TZ87|MARH9_MOUSE E3 ubiquitin-protein ligase MARCH9 OS=Mus musculus GN=March9 PE=2
SV=1
Length = 348
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 85/211 (40%), Gaps = 58/211 (27%)
Query: 279 CRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQNLPVTLL 338
CRIC + E GE C C G + H+ C I+W + +G+ +C++C + Q L ++
Sbjct: 110 CRICF-QGPEQGELLS-PCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAIST- 166
Query: 339 RIQSTRFRNGARGQLSDLNGYRVWQEVPVLVIVSMLAYFCFLEQLLVAKMGTGAIAISLP 398
+N + WQ + + VI E++ +A + G++ +
Sbjct: 167 -------KNPLQ-----------WQAISLTVI----------EKVQIAAIVLGSLFLVAS 198
Query: 399 FSCVLGLLASMTSSTMVKRRFVWVYASFQFALVVLFAHIFYSLVGVQAVLSILLATFSGF 458
S + + +S++ S +R+ L I Y + G V+ I L
Sbjct: 199 ISWL--IWSSLSPSAKWQRQ-------------DLLFQICYGMYGFMDVVCIGL------ 237
Query: 459 GVAMSGSSILVEFLRWKQRWEARSNQQHPVL 489
+ GSS+ F RW+ NQQ VL
Sbjct: 238 -IVHEGSSVYRIFKRWQA-----VNQQWKVL 262
>sp|Q86YJ5|MARH9_HUMAN E3 ubiquitin-protein ligase MARCH9 OS=Homo sapiens GN=MARCH9 PE=1
SV=2
Length = 346
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 85/211 (40%), Gaps = 58/211 (27%)
Query: 279 CRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQNLPVTLL 338
CRIC + E GE C C G + H+ C I+W + +G+ +C++C + Q L ++
Sbjct: 110 CRICF-QGPEQGELLS-PCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAIST- 166
Query: 339 RIQSTRFRNGARGQLSDLNGYRVWQEVPVLVIVSMLAYFCFLEQLLVAKMGTGAIAISLP 398
+N + WQ + + VI E++ +A + G++ +
Sbjct: 167 -------KNPLQ-----------WQAISLTVI----------EKVQIAAIVLGSLFLVAS 198
Query: 399 FSCVLGLLASMTSSTMVKRRFVWVYASFQFALVVLFAHIFYSLVGVQAVLSILLATFSGF 458
S + + +S++ S +R+ L I Y + G V+ I L
Sbjct: 199 ISWL--IWSSLSPSAKWQRQ-------------DLLFQICYGMYGFMDVVCIGL------ 237
Query: 459 GVAMSGSSILVEFLRWKQRWEARSNQQHPVL 489
+ GSS+ F RW+ NQQ VL
Sbjct: 238 -IIHEGSSVYRIFKRWQA-----VNQQWKVL 262
>sp|Q8NA82|MARHA_HUMAN Probable E3 ubiquitin-protein ligase MARCH10 OS=Homo sapiens
GN=MARCH10 PE=2 SV=3
Length = 808
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 279 CRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMK--------GNKTCDVCKQ 328
CRIC + C C G L H+EC KW +K KTC++CKQ
Sbjct: 659 CRICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKTCEMCKQ 716
>sp|Q6ZQ89|MARH6_MOUSE E3 ubiquitin-protein ligase MARCH6 OS=Mus musculus GN=March6 PE=2
SV=2
Length = 909
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 275 EEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQNLP 334
EE +CR+C E + C C G + H+EC ++W + C++CK P
Sbjct: 5 EEDICRVCRSEGTPEKPLYH-PCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAFTP 63
Query: 335 V 335
+
Sbjct: 64 I 64
>sp|O60337|MARH6_HUMAN E3 ubiquitin-protein ligase MARCH6 OS=Homo sapiens GN=MARCH6 PE=1
SV=2
Length = 910
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 275 EEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQNLP 334
EE +CR+C E + C C G + H+EC ++W + C++CK P
Sbjct: 5 EEDICRVCRSEGTPEKPLYH-PCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAFTP 63
Query: 335 V 335
+
Sbjct: 64 I 64
>sp|Q0P496|MARH4_DANRE E3 ubiquitin-protein ligase MARCH4 OS=Danio rerio GN=march4 PE=2
SV=1
Length = 421
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 88/220 (40%), Gaps = 66/220 (30%)
Query: 278 VCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQNLPVTL 337
+CRIC + E GE C C G + H+ C IKW + +G+ +C++C + Q + ++
Sbjct: 142 LCRICF-QGPEQGELLS-PCRCSGSVRCTHEPCLIKWISERGSWSCELCYYKYQVIAIST 199
Query: 338 LRIQSTRFRNGARGQLSDLNGYRVWQEVPVLVIVSMLAYFCFLEQLLVAKMGTGAIAISL 397
+N + WQ + + VI + Q+ A +G+
Sbjct: 200 --------KNPLQ-----------WQAISLTVIEKV--------QIAAAVLGS------- 225
Query: 398 PFSCVLGLLASMTSSTMVKRRFVW--VYASFQFALVVLFAHIFYSLVGVQAVLSILLATF 455
L L+AS++ VW + S ++ L I Y++ G ++ I L
Sbjct: 226 -----LFLIASIS-------WLVWSSLSPSAKWQRQDLLFQICYAMYGFMDLVCIAL--- 270
Query: 456 SGFGVAMSGSSILVEFLRWK---QRW------EARSNQQH 486
+ G S+ F RW+ Q+W + + N+ H
Sbjct: 271 ----IVHEGPSVFRIFNRWQAVNQQWKVLNYDKVKDNEDH 306
>sp|Q5R9W1|MARH6_PONAB E3 ubiquitin-protein ligase MARCH6 OS=Pongo abelii GN=MARCH6 PE=2
SV=1
Length = 910
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 275 EEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQNLP 334
EE +CR+C E + C C G + H+EC ++W + C++CK P
Sbjct: 5 EEDICRVCRSEGTPEKPLYH-PCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAFTP 63
Query: 335 V 335
+
Sbjct: 64 I 64
>sp|P27426|VIE1_BHV4D Probable E3 ubiquitin-protein ligase IE1 OS=Bovine herpesvirus 4
(strain DN-599) GN=IE1 PE=3 SV=1
Length = 285
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 60/149 (40%), Gaps = 26/149 (17%)
Query: 272 IPEEEAVCRICLVELCEGGETF--KMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQE 329
I EE C IC GE+ C+C G+L H+EC W +M G K C C+
Sbjct: 125 IDEEGKQCWIC-----RDGESLPEARYCNCYGDLQYCHEECLKTWISMSGEKKCKFCQTP 179
Query: 330 VQ---------NLPVTLLRIQSTRFRNGARGQLSDLNGYRVWQEVPVLVIVSMLAYFCFL 380
+ LP R F G G + L G+ L++V YF +
Sbjct: 180 YKVNRQLSLKRGLPGYWDRDDRFVFIAGFIGMGTILAGWIA--SFFYLLVVLCGKYFTYK 237
Query: 381 EQLLVAKMGTGAIAISLPFSCVLGLLASM 409
+ ++V G +AI V+GL+ S+
Sbjct: 238 DVMIVV----GGLAIIQ----VVGLMFSL 258
>sp|O60103|DOA10_SCHPO ERAD-associated E3 ubiquitin-protein ligase doa10
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=doa10 PE=1 SV=1
Length = 1242
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 275 EEAVCRICLVELCEGGETFKM--ECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQ 331
++ +CR+C CEG + C C G + H+EC ++W C++CK + +
Sbjct: 4 DDEICRVCR---CEGAPDSPLFHPCKCTGSIRYVHQECLVEWLGHSKKTHCELCKAKFE 59
>sp|A6NNE9|MARHB_HUMAN E3 ubiquitin-protein ligase MARCH11 OS=Homo sapiens GN=MARCH11 PE=2
SV=3
Length = 402
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 24/130 (18%)
Query: 269 GEDIPEEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVC-- 326
G + +C+IC + E GE C C G + H+ C +KW + +G+ TC++C
Sbjct: 160 GHQHQHHQPICKICF-QGAEQGELLN-PCRCDGSVRYTHQLCLLKWISERGSWTCELCCY 217
Query: 327 ---------KQEVQNLPVTLLRIQSTRFRNGARGQL-----------SDLNGYRVWQEVP 366
KQ Q +++ ++ + G L S + Y VWQ
Sbjct: 218 RYHVIAIKMKQPCQWQSISITLVEKVQMIAVILGSLFLIASVTWLLWSAFSPYAVWQRKD 277
Query: 367 VLVIVSMLAY 376
+L + Y
Sbjct: 278 ILFQICYGMY 287
>sp|Q9P0N8|MARH2_HUMAN E3 ubiquitin-protein ligase MARCH2 OS=Homo sapiens GN=MARCH2 PE=1
SV=1
Length = 246
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 271 DIPEEEAVCRICLVELCEG--GETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQ 328
D P + CRIC EG GE C C G L HK C KW + C++C
Sbjct: 56 DTPSDGPFCRICH----EGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHT 111
Query: 329 E 329
E
Sbjct: 112 E 112
>sp|A6P320|MARHB_RAT E3 ubiquitin-protein ligase MARCH11 OS=Rattus norvegicus GN=March11
PE=1 SV=1
Length = 398
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 24/125 (19%)
Query: 274 EEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVC------- 326
+ +C+IC + E GE C C G + H+ C +KW + +G+ TC++C
Sbjct: 161 HHQPICKICF-QGAEQGELLN-PCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYHVT 218
Query: 327 ----KQEVQNLPVTLLRIQSTRFRNGARGQL-----------SDLNGYRVWQEVPVLVIV 371
KQ Q +++ ++ + G L S + Y VWQ +L +
Sbjct: 219 AIKMKQPCQWQSISITLVEKVQMIAVILGSLFLIASVTWLLWSAFSPYAVWQRKDILFQI 278
Query: 372 SMLAY 376
Y
Sbjct: 279 CYGMY 283
>sp|Q8CBH7|MARHB_MOUSE E3 ubiquitin-protein ligase MARCH11 OS=Mus musculus GN=March11 PE=2
SV=2
Length = 400
Score = 42.0 bits (97), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 24/125 (19%)
Query: 274 EEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVC------- 326
+ +C+IC + E GE C C G + H+ C +KW + +G+ TC++C
Sbjct: 163 HHQPICKICF-QGAEQGELLN-PCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYHVT 220
Query: 327 ----KQEVQNLPVTLLRIQSTRFRNGARGQL-----------SDLNGYRVWQEVPVLVIV 371
KQ Q +++ ++ + G L S + Y VWQ +L +
Sbjct: 221 AIKMKQPCQWQSISITLVEKVQMIAVILGSLFLIASVTWLLWSAFSPYAVWQRKDILFQI 280
Query: 372 SMLAY 376
Y
Sbjct: 281 CYGMY 285
>sp|Q6NZQ8|MARH1_MOUSE E3 ubiquitin-protein ligase MARCH1 OS=Mus musculus GN=March1 PE=1
SV=2
Length = 289
Score = 42.0 bits (97), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 273 PEEEAVCRICLVELCEGGETFKM--ECSCKGELALAHKECAIKWFTMKGNKTCDVCKQE 329
P + +CRIC CEG E + C C G L H+ C +W + C++CK +
Sbjct: 74 PSTQDICRICH---CEGDEESPLITPCRCTGTLRFVHQSCLHQWIKSSDTRCCELCKYD 129
>sp|Q8TCQ1|MARH1_HUMAN E3 ubiquitin-protein ligase MARCH1 OS=Homo sapiens GN=MARCH1 PE=1
SV=1
Length = 289
Score = 42.0 bits (97), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 273 PEEEAVCRICLVELCEGGETFKM--ECSCKGELALAHKECAIKWFTMKGNKTCDVCKQE 329
P + +CRIC CEG E + C C G L H+ C +W + C++CK +
Sbjct: 74 PSTQDICRICH---CEGDEESPLITPCRCTGTLRFVHQSCLHQWIKSSDTRCCELCKYD 129
>sp|Q9DBD2|MARH8_MOUSE E3 ubiquitin-protein ligase MARCH8 OS=Mus musculus GN=March8 PE=2
SV=1
Length = 286
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 273 PEEEAVCRICLVELCEGGETFKM--ECSCKGELALAHKECAIKWFTMKGNKTCDVCKQE 329
P + +CRIC CEG + + C C G L H+ C +W + C++CK E
Sbjct: 70 PSNQDICRICH---CEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYE 125
>sp|Q5I0I2|MARH2_RAT E3 ubiquitin-protein ligase MARCH2 OS=Rattus norvegicus GN=March2
PE=1 SV=1
Length = 246
Score = 41.6 bits (96), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 271 DIPEEEAVCRICLVELCEG--GETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQ 328
D P + CRIC EG GE C C G L HK C KW + C++C
Sbjct: 56 DTPSDCPFCRICH----EGANGENLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHT 111
Query: 329 E 329
E
Sbjct: 112 E 112
>sp|Q0VD59|MARH8_BOVIN E3 ubiquitin-protein ligase MARCH8 OS=Bos taurus GN=MARCH8 PE=2
SV=1
Length = 289
Score = 40.8 bits (94), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 273 PEEEAVCRICLVELCEGGETFKM--ECSCKGELALAHKECAIKWFTMKGNKTCDVCKQE 329
P + +CRIC CEG + + C C G L H+ C +W + C++CK E
Sbjct: 72 PSNQDICRICH---CEGDDESPLITPCRCTGSLHFVHQTCLQQWIKSSDTRCCELCKYE 127
>sp|Q9P2E8|MARH4_HUMAN E3 ubiquitin-protein ligase MARCH4 OS=Homo sapiens GN=MARCH4 PE=2
SV=2
Length = 410
Score = 40.8 bits (94), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 278 VCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQNLPVT 336
+CRIC + E GE C C G + H+ C IKW + +G +C++C + + ++
Sbjct: 162 LCRICF-QGPEQGELLS-PCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAIS 218
>sp|Q5T0T0|MARH8_HUMAN E3 ubiquitin-protein ligase MARCH8 OS=Homo sapiens GN=MARCH8 PE=1
SV=1
Length = 291
Score = 40.8 bits (94), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 273 PEEEAVCRICLVELCEGGETFKM--ECSCKGELALAHKECAIKWFTMKGNKTCDVCKQE 329
P + +CRIC CEG + + C C G L H+ C +W + C++CK E
Sbjct: 74 PSSQDICRICH---CEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYE 129
>sp|P90489|MIR2_HHV8P E3 ubiquitin-protein ligase MIR2 OS=Human herpesvirus 8 type P
(isolate GK18) GN=K5 PE=1 SV=1
Length = 256
Score = 40.0 bits (92), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 270 EDIPE--EEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCK 327
+D+ E E +C IC E+ G C+C GEL + H +C W T+ N C +C+
Sbjct: 4 KDVEEGVEGPICWICREEV---GNEGIHPCACTGELDVVHPQCLSTWLTVSRNTACQMCR 60
>sp|Q32L65|MARH2_BOVIN E3 ubiquitin-protein ligase MARCH2 OS=Bos taurus GN=MARCH2 PE=2
SV=1
Length = 245
Score = 40.0 bits (92), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 271 DIPEEEAVCRICLVELCEG--GETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQ 328
+ P + CRIC EG GE+ C C G L HK C +W + C++C
Sbjct: 56 ETPSDGPFCRICH----EGANGESLLSPCGCSGTLGAVHKSCLERWLSSSNTSYCELCHT 111
Query: 329 E 329
E
Sbjct: 112 E 112
>sp|Q80TE3|MARH4_MOUSE E3 ubiquitin-protein ligase MARCH4 OS=Mus musculus GN=March4 PE=2
SV=3
Length = 409
Score = 40.0 bits (92), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 278 VCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQNLPVT 336
+CRIC + E GE C C G + H+ C IKW + +G +C++C + + ++
Sbjct: 161 LCRICF-QGPEQGELLS-PCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAIS 217
>sp|Q5XH39|MARH8_XENLA E3 ubiquitin-protein ligase MARCH8 OS=Xenopus laevis GN=march8 PE=2
SV=2
Length = 264
Score = 40.0 bits (92), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 273 PEEEAVCRICLVELCEGGETFKM--ECSCKGELALAHKECAIKWFTMKGNKTCDVCKQE 329
P + +CRIC CEG + + C C G L H+ C +W + C++CK E
Sbjct: 47 PSSQDICRICH---CEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKFE 102
>sp|Q5PQ35|MARH2_XENLA E3 ubiquitin-protein ligase MARCH2 OS=Xenopus laevis GN=march2 PE=2
SV=1
Length = 246
Score = 40.0 bits (92), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 16/84 (19%)
Query: 248 KEGEEISNTSQIVDTENNDADGEDIPEEEAVCRICLVELCEGG--ETFKMECSCKGELAL 305
K+G+ +S + + T+ +DG +CRIC EGG E C C G L
Sbjct: 43 KDGQLLSTVIKALGTQ---SDG-------PICRICH----EGGNGERLLSPCDCTGTLGT 88
Query: 306 AHKECAIKWFTMKGNKTCDVCKQE 329
HK C KW + C++C E
Sbjct: 89 VHKTCLEKWLSSSNTSYCELCHTE 112
>sp|Q28EX7|MARH2_XENTR E3 ubiquitin-protein ligase MARCH2 OS=Xenopus tropicalis GN=march2
PE=2 SV=1
Length = 246
Score = 40.0 bits (92), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 16/84 (19%)
Query: 248 KEGEEISNTSQIVDTENNDADGEDIPEEEAVCRICLVELCEGG--ETFKMECSCKGELAL 305
K+G+ +S + + T+ +DG +CRIC EGG E C C G L
Sbjct: 43 KDGQLLSTVIKALGTQ---SDG-------PICRICH----EGGNGERLLSPCDCTGTLGT 88
Query: 306 AHKECAIKWFTMKGNKTCDVCKQE 329
HK C KW + C++C E
Sbjct: 89 VHKTCLEKWLSSSNTSYCELCHTE 112
>sp|Q28IK8|MARH8_XENTR E3 ubiquitin-protein ligase MARCH8 OS=Xenopus tropicalis GN=march8
PE=2 SV=1
Length = 264
Score = 39.7 bits (91), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 273 PEEEAVCRICLVELCEGGETFKM--ECSCKGELALAHKECAIKWFTMKGNKTCDVCKQE 329
P + +CRIC CEG + + C C G L H+ C +W + C++CK E
Sbjct: 47 PSSQDICRICH---CEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKFE 102
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 39.7 bits (91), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 274 EEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEV 330
+E VC ICL E +G + + CS H +C W T K KTC VCKQ+V
Sbjct: 235 DEYDVCAICLEEYEDGDKLRILPCS-----HAYHCKCVDPWLT-KTKKTCPVCKQKV 285
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 39.7 bits (91), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 274 EEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEV 330
+E VC ICL E +G + + CS H +C W T K KTC VCKQ+V
Sbjct: 235 DEYDVCAICLEEYEDGDKLRILPCS-----HAYHCKCVDPWLT-KTKKTCPVCKQKV 285
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 39.3 bits (90), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 274 EEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEV 330
+E VC ICL E +G + + CS H +C W T K KTC VCKQ+V
Sbjct: 235 DEYDVCAICLDEYEDGDKLRILPCS-----HAYHCKCVDPWLT-KTKKTCPVCKQKV 285
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 38.9 bits (89), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 274 EEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEV 330
+E VC ICL E +G + + CS H +C W T K KTC VCKQ+V
Sbjct: 235 DEYDVCAICLDEYEDGDKLRILPCS-----HAYHCKCVDPWLT-KTKKTCPVCKQKV 285
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 38.9 bits (89), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 274 EEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEV 330
+E VC ICL E +G + + CS H +C W T K KTC VCKQ+V
Sbjct: 235 DEYDVCAICLDEYEDGDKLRILPCS-----HAYHCKCVDPWLT-KTKKTCPVCKQKV 285
>sp|Q99M02|MARH2_MOUSE E3 ubiquitin-protein ligase MARCH2 OS=Mus musculus GN=March2 PE=2
SV=1
Length = 246
Score = 38.9 bits (89), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 16/84 (19%)
Query: 248 KEGEEISNTSQIVDTENNDADGEDIPEEEAVCRICLVELCEG--GETFKMECSCKGELAL 305
++G +S + +D+++ D P CRIC EG GE C C G L
Sbjct: 43 RDGRLLSTVIRALDSQS------DCP----FCRICH----EGANGENLLSPCGCTGTLGA 88
Query: 306 AHKECAIKWFTMKGNKTCDVCKQE 329
HK C KW + C++C E
Sbjct: 89 VHKSCLEKWLSSSNTSYCELCHTE 112
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 38.9 bits (89), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 274 EEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEV 330
+E VC ICL E +G + + CS H +C W T K KTC VCKQ+V
Sbjct: 235 DEYDVCAICLDEYEDGDKLRILPCS-----HAYHCKCVDPWLT-KTKKTCPVCKQKV 285
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 38.9 bits (89), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 278 VCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEV 330
C +C+ E EG + K+ CS + H C +W + N TC +C++ V
Sbjct: 584 TCSVCITEYTEGNKLRKLPCSHE-----YHVHCIDRWLSE--NSTCPICRRAV 629
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 278 VCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEV 330
C +C+ E EG + K+ CS + H C +W + N TC +C++ V
Sbjct: 569 TCSVCITEYTEGNKLRKLPCSHE-----YHVHCIDRWLSE--NSTCPICRRAV 614
>sp|P32225|LAP_SWPVK E3 ubiquitin-protein ligase LAP OS=Swinepox virus (strain Kasza)
GN=LAP PE=3 SV=1
Length = 155
Score = 38.5 bits (88), Expect = 0.12, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 276 EAVCRICLVELCEGGETFKME---CSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQN 332
+ VC IC + + +E C+CK E + H EC KW ++C +C +E
Sbjct: 2 DPVCWIC-------KDDYSIEKNYCNCKNEYKVVHDECMKKWIQYSRERSCKLCNKEYNI 54
Query: 333 LPV 335
+ V
Sbjct: 55 ISV 57
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 278 VCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEV 330
C +C+ E EG + K+ CS + H C +W + N TC +C++ V
Sbjct: 545 TCSVCITEYTEGNKLRKLPCSHE-----YHVHCIDRWLSE--NSTCPICRRAV 590
>sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2
SV=1
Length = 347
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 274 EEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQNL 333
+E VC ICL E +G + + C+ H C W T + KTC +CKQ V
Sbjct: 225 DEYDVCAICLDEYEDGDKLRVLPCA-----HAYHSRCVDPWLT-QTRKTCPICKQPVHRG 278
Query: 334 P 334
P
Sbjct: 279 P 279
>sp|Q4R6Y5|ZNRF4_MACFA Zinc/RING finger protein 4 OS=Macaca fascicularis GN=ZNRF4 PE=2
SV=1
Length = 429
Score = 37.7 bits (86), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 278 VCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEV 330
+C ICL E EG + + CS H +C WF+ ++C VCKQ V
Sbjct: 308 LCAICLDEYEEGDQLKILPCS-----HTYHCKCIDPWFSQAPRRSCPVCKQSV 355
>sp|Q8WWF5|ZNRF4_HUMAN Zinc/RING finger protein 4 OS=Homo sapiens GN=ZNRF4 PE=2 SV=3
Length = 429
Score = 37.4 bits (85), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 278 VCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEV 330
+C ICL E EG + + CS H +C WF+ ++C VCKQ V
Sbjct: 308 LCAICLDEYEEGDQLKILPCS-----HTYHCKCIDPWFSQAPRRSCPVCKQSV 355
>sp|Q1LVZ2|MARH2_DANRE E3 ubiquitin-protein ligase MARCH2 OS=Danio rerio GN=march2 PE=2
SV=1
Length = 249
Score = 37.0 bits (84), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 24/124 (19%)
Query: 211 GALKQISRSLSVPLNRKEGSIRRMDSFFRVIAATPRVKEGEEISNTSQIVDTENNDADGE 270
G+L + + ++ +E RR +V A K+G +S + + T+++
Sbjct: 11 GSLCDCTGNAALSKTVEEADNRRAQYVTQVTA-----KDGRLLSTVIKALGTQSD----- 60
Query: 271 DIPEEEAVCRICLVELCEGGETFKME-----CSCKGELALAHKECAIKWFTMKGNKTCDV 325
+CRIC EG + E C C G L HK C KW + C++
Sbjct: 61 -----RPICRICH----EGQDVCNSEGLLSPCDCTGTLGTVHKSCLEKWLSSSNTSYCEL 111
Query: 326 CKQE 329
C E
Sbjct: 112 CHTE 115
>sp|Q0IH10|MARH3_XENLA E3 ubiquitin-protein ligase MARCH3 OS=Xenopus laevis GN=march3 PE=2
SV=1
Length = 252
Score = 35.8 bits (81), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 248 KEGEEISNTSQIVDTENNDADGEDIPEEEAVCRICLVELCEGG--ETFKMECSCKGELAL 305
K+G+ +S + + T+++ D +CRIC EG E C C G L
Sbjct: 46 KDGQLLSTVVRTLTTQSSFND-------HPMCRICH----EGSTQEDLLSPCECTGTLGT 94
Query: 306 AHKECAIKWFTMKGNKTCDVCK 327
H+ C W + C++C
Sbjct: 95 IHRSCLEHWLSSSNTSYCELCH 116
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 189,495,501
Number of Sequences: 539616
Number of extensions: 7999053
Number of successful extensions: 99884
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 238
Number of HSP's that attempted gapping in prelim test: 60460
Number of HSP's gapped (non-prelim): 32870
length of query: 515
length of database: 191,569,459
effective HSP length: 122
effective length of query: 393
effective length of database: 125,736,307
effective search space: 49414368651
effective search space used: 49414368651
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)