Query 010219
Match_columns 515
No_of_seqs 220 out of 1174
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 22:29:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010219.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010219hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d8s_A Cellular modulator of i 99.6 2.4E-16 8.2E-21 130.2 5.4 58 274-332 13-70 (80)
2 1vyx_A ORF K3, K3RING; zinc-bi 99.6 3.9E-16 1.3E-20 122.7 3.4 55 274-331 4-58 (60)
3 2kiz_A E3 ubiquitin-protein li 99.1 8.3E-11 2.8E-15 91.6 5.9 52 274-332 12-63 (69)
4 1x4j_A Ring finger protein 38; 99.1 7.9E-11 2.7E-15 93.5 5.2 51 274-331 21-71 (75)
5 2ep4_A Ring finger protein 24; 99.1 2.2E-10 7.6E-15 90.3 6.5 52 275-333 14-65 (74)
6 2l0b_A E3 ubiquitin-protein li 99.0 2E-10 6.9E-15 95.1 5.3 51 274-331 38-88 (91)
7 2ect_A Ring finger protein 126 99.0 2.5E-10 8.5E-15 90.9 4.8 53 274-333 13-65 (78)
8 1iym_A EL5; ring-H2 finger, ub 99.0 1.5E-10 5.3E-15 86.2 3.1 50 275-331 4-54 (55)
9 2ecl_A Ring-box protein 2; RNF 98.9 7.7E-10 2.6E-14 90.1 4.2 50 276-332 15-76 (81)
10 1v87_A Deltex protein 2; ring- 98.8 1.8E-09 6E-14 91.7 4.7 51 277-332 26-94 (114)
11 2ecm_A Ring finger and CHY zin 98.8 2.5E-09 8.7E-14 79.3 4.3 50 275-331 4-54 (55)
12 3dpl_R Ring-box protein 1; ubi 98.8 5.2E-09 1.8E-13 90.5 5.2 49 276-331 37-100 (106)
13 2ea6_A Ring finger protein 4; 98.8 5.8E-09 2E-13 80.2 4.9 51 274-331 13-67 (69)
14 2ct2_A Tripartite motif protei 98.7 2.3E-08 8E-13 80.4 6.7 54 274-332 13-68 (88)
15 3ng2_A RNF4, snurf, ring finge 98.7 7.7E-09 2.6E-13 80.3 3.4 52 274-332 8-63 (71)
16 1chc_A Equine herpes virus-1 r 98.6 1.7E-08 5.7E-13 78.1 4.2 50 274-332 3-52 (68)
17 2d8t_A Dactylidin, ring finger 98.6 2.3E-08 7.8E-13 78.6 4.6 49 274-332 13-61 (71)
18 2xeu_A Ring finger protein 4; 98.6 2E-08 6.9E-13 76.1 3.4 50 276-332 3-56 (64)
19 2csy_A Zinc finger protein 183 98.6 5.5E-08 1.9E-12 78.1 5.8 48 274-331 13-60 (81)
20 2yur_A Retinoblastoma-binding 98.6 5.2E-08 1.8E-12 77.4 5.4 50 274-331 13-63 (74)
21 2ecn_A Ring finger protein 141 98.6 2.1E-08 7.3E-13 78.1 2.9 47 275-332 14-60 (70)
22 4a0k_B E3 ubiquitin-protein li 98.6 9.3E-09 3.2E-13 90.8 0.4 48 277-331 49-111 (117)
23 2ysl_A Tripartite motif-contai 98.5 7.5E-08 2.6E-12 75.2 5.3 51 274-332 18-69 (73)
24 2ct0_A Non-SMC element 1 homol 98.5 4.9E-08 1.7E-12 80.0 3.4 51 275-332 14-64 (74)
25 2djb_A Polycomb group ring fin 98.5 1.1E-07 3.7E-12 74.9 5.1 49 274-332 13-62 (72)
26 2ecy_A TNF receptor-associated 98.4 1.2E-07 4.1E-12 73.3 3.8 50 274-332 13-62 (66)
27 2ysj_A Tripartite motif-contai 98.4 3.7E-07 1.3E-11 69.8 6.0 45 274-326 18-63 (63)
28 1t1h_A Gspef-atpub14, armadill 98.4 3.2E-07 1.1E-11 72.8 5.3 50 274-332 6-55 (78)
29 3ztg_A E3 ubiquitin-protein li 98.4 2.9E-07 9.8E-12 75.2 5.1 50 274-331 11-61 (92)
30 2ecw_A Tripartite motif-contai 98.4 4.1E-07 1.4E-11 72.1 5.6 50 275-332 18-71 (85)
31 2ecv_A Tripartite motif-contai 98.3 4.1E-07 1.4E-11 72.1 5.0 50 275-332 18-71 (85)
32 2ecj_A Tripartite motif-contai 98.3 3.3E-07 1.1E-11 68.3 3.9 45 274-326 13-58 (58)
33 4ayc_A E3 ubiquitin-protein li 98.3 1.7E-07 5.8E-12 82.8 2.5 48 276-333 53-100 (138)
34 4ap4_A E3 ubiquitin ligase RNF 98.3 3.3E-07 1.1E-11 78.1 3.8 54 275-335 6-63 (133)
35 4ap4_A E3 ubiquitin ligase RNF 98.2 8.2E-07 2.8E-11 75.6 4.4 51 275-332 71-125 (133)
36 2egp_A Tripartite motif-contai 98.2 2.6E-07 8.8E-12 73.0 0.8 51 274-332 10-65 (79)
37 1g25_A CDK-activating kinase a 98.2 8.3E-07 2.8E-11 68.4 3.3 51 276-332 3-55 (65)
38 3lrq_A E3 ubiquitin-protein li 98.2 7.7E-07 2.6E-11 74.7 3.3 49 275-332 21-70 (100)
39 2y43_A E3 ubiquitin-protein li 98.2 6.6E-07 2.2E-11 74.3 2.5 48 275-332 21-69 (99)
40 2ckl_B Ubiquitin ligase protei 98.2 8.5E-07 2.9E-11 80.1 3.4 49 274-331 52-101 (165)
41 2ckl_A Polycomb group ring fin 98.1 1.7E-06 5.8E-11 73.0 4.1 48 275-332 14-62 (108)
42 3fl2_A E3 ubiquitin-protein li 98.1 1.2E-06 4.1E-11 75.6 3.2 49 275-332 51-99 (124)
43 3l11_A E3 ubiquitin-protein li 98.0 1.3E-06 4.3E-11 74.4 0.7 50 274-332 13-62 (115)
44 3k1l_B Fancl; UBC, ring, RWD, 98.0 2.9E-06 9.9E-11 87.6 3.1 53 274-331 306-372 (381)
45 1jm7_A BRCA1, breast cancer ty 97.9 2.1E-06 7.2E-11 72.0 1.7 49 276-332 21-70 (112)
46 1z6u_A NP95-like ring finger p 97.9 4.8E-06 1.6E-10 75.3 3.2 49 275-332 77-125 (150)
47 3hct_A TNF receptor-associated 97.9 1.1E-05 3.6E-10 69.4 4.9 50 274-332 16-65 (118)
48 1rmd_A RAG1; V(D)J recombinati 97.8 6.6E-06 2.3E-10 70.1 2.5 49 275-332 22-70 (116)
49 2kre_A Ubiquitin conjugation f 97.8 4.3E-05 1.5E-09 64.9 6.9 49 274-332 27-75 (100)
50 2kr4_A Ubiquitin conjugation f 97.8 3E-05 1E-09 63.7 5.7 49 274-332 12-60 (85)
51 1e4u_A Transcriptional repress 97.7 1.6E-05 5.4E-10 65.0 3.5 54 275-335 10-65 (78)
52 2y1n_A E3 ubiquitin-protein li 97.7 2.1E-05 7.1E-10 81.9 4.6 49 276-333 332-380 (389)
53 3knv_A TNF receptor-associated 97.6 1.6E-05 5.5E-10 71.2 2.3 49 274-331 29-77 (141)
54 2vje_B MDM4 protein; proto-onc 97.6 3.6E-05 1.2E-09 59.9 3.7 50 273-332 4-56 (63)
55 1wgm_A Ubiquitin conjugation f 97.5 0.00011 3.7E-09 62.3 6.1 50 274-332 20-69 (98)
56 2vje_A E3 ubiquitin-protein li 97.5 7.1E-05 2.4E-09 58.4 3.5 48 275-332 7-57 (64)
57 1bor_A Transcription factor PM 97.5 2.1E-05 7.2E-10 59.6 0.4 46 274-332 4-49 (56)
58 4ic3_A E3 ubiquitin-protein li 97.4 2.9E-05 9.8E-10 62.0 0.9 44 275-332 23-67 (74)
59 1jm7_B BARD1, BRCA1-associated 97.4 2E-05 6.7E-10 67.6 -0.4 45 275-331 21-66 (117)
60 2c2l_A CHIP, carboxy terminus 97.3 0.00018 6.2E-09 68.1 5.4 49 275-332 207-255 (281)
61 3hcs_A TNF receptor-associated 97.1 0.00034 1.2E-08 63.2 4.1 50 274-332 16-65 (170)
62 2ecg_A Baculoviral IAP repeat- 97.1 3.5E-05 1.2E-09 61.4 -2.1 44 275-332 24-68 (75)
63 2yu4_A E3 SUMO-protein ligase 97.0 0.00059 2E-08 56.8 4.4 48 274-329 5-59 (94)
64 2ea5_A Cell growth regulator w 97.0 0.00047 1.6E-08 54.6 3.3 45 274-332 13-58 (68)
65 2f42_A STIP1 homology and U-bo 96.9 0.00072 2.5E-08 63.6 4.8 50 274-332 104-153 (179)
66 3nw0_A Non-structural maintena 96.8 0.00055 1.9E-08 66.6 3.3 50 276-333 180-230 (238)
67 1wim_A KIAA0161 protein; ring 96.8 0.00077 2.6E-08 55.5 3.3 50 275-330 4-62 (94)
68 3htk_C E3 SUMO-protein ligase 96.5 0.0019 6.4E-08 64.5 4.9 51 274-331 179-231 (267)
69 3t6p_A Baculoviral IAP repeat- 96.3 0.00098 3.4E-08 68.2 1.3 44 275-332 294-338 (345)
70 2bay_A PRE-mRNA splicing facto 95.9 0.0048 1.6E-07 48.1 3.3 46 277-332 4-50 (61)
71 2yho_A E3 ubiquitin-protein li 95.8 0.0022 7.6E-08 52.0 0.9 44 276-333 18-62 (79)
72 2lri_C Autoimmune regulator; Z 94.6 0.016 5.6E-07 46.2 2.6 56 270-334 6-64 (66)
73 3vk6_A E3 ubiquitin-protein li 91.2 0.15 5.2E-06 44.3 3.7 49 278-334 3-51 (101)
74 1wev_A Riken cDNA 1110020M19; 88.1 0.047 1.6E-06 45.5 -1.8 54 274-332 14-75 (88)
75 2l43_A N-teminal domain from h 87.9 0.17 6E-06 42.2 1.5 55 274-331 23-77 (88)
76 1weu_A Inhibitor of growth fam 86.1 0.36 1.2E-05 40.9 2.5 50 273-331 33-87 (91)
77 2l5u_A Chromodomain-helicase-D 84.9 0.4 1.4E-05 37.3 2.0 47 274-329 9-58 (61)
78 2ku3_A Bromodomain-containing 84.6 0.26 9E-06 39.7 0.9 51 274-329 14-66 (71)
79 2k16_A Transcription initiatio 84.2 0.24 8.3E-06 39.4 0.5 51 274-331 16-70 (75)
80 3u5n_A E3 ubiquitin-protein li 81.1 0.23 7.9E-06 46.7 -0.9 49 275-331 6-56 (207)
81 2yt5_A Metal-response element- 80.6 0.28 9.6E-06 38.1 -0.4 52 274-330 4-62 (66)
82 3o36_A Transcription intermedi 78.7 0.4 1.4E-05 44.1 -0.0 48 275-331 3-53 (184)
83 2e6r_A Jumonji/ARID domain-con 77.2 0.4 1.4E-05 40.3 -0.5 52 274-331 14-68 (92)
84 2lv9_A Histone-lysine N-methyl 75.4 1 3.4E-05 38.1 1.5 46 276-329 28-76 (98)
85 2ysm_A Myeloid/lymphoid or mix 74.6 0.8 2.7E-05 38.9 0.7 48 274-326 5-54 (111)
86 1wen_A Inhibitor of growth fam 74.5 1 3.5E-05 36.2 1.2 49 274-331 14-67 (71)
87 2lbm_A Transcriptional regulat 74.4 2.3 7.7E-05 38.8 3.7 44 276-328 63-116 (142)
88 3ql9_A Transcriptional regulat 73.5 2.6 8.8E-05 37.9 3.7 46 274-328 55-110 (129)
89 2ri7_A Nucleosome-remodeling f 71.1 1.1 3.8E-05 40.6 0.8 51 274-330 6-60 (174)
90 1mm2_A MI2-beta; PHD, zinc fin 69.8 0.65 2.2E-05 36.1 -0.9 46 275-329 8-56 (61)
91 1xwh_A Autoimmune regulator; P 69.2 0.79 2.7E-05 36.0 -0.5 47 274-329 6-55 (66)
92 1f62_A Transcription factor WS 68.5 1.6 5.5E-05 32.2 1.1 46 277-328 1-49 (51)
93 2yql_A PHD finger protein 21A; 68.4 0.81 2.8E-05 34.7 -0.6 46 274-328 7-55 (56)
94 1weo_A Cellulose synthase, cat 67.5 4.5 0.00015 34.7 3.7 53 275-333 15-71 (93)
95 4gne_A Histone-lysine N-methyl 67.1 2.7 9.1E-05 36.5 2.3 50 274-331 13-64 (107)
96 3kv5_D JMJC domain-containing 63.8 1.5 5E-05 46.9 0.0 53 274-331 35-90 (488)
97 1fp0_A KAP-1 corepressor; PHD 63.3 2.8 9.5E-05 35.4 1.7 47 274-329 23-72 (88)
98 1wep_A PHF8; structural genomi 62.5 4.5 0.00015 32.6 2.7 51 274-331 10-65 (79)
99 1we9_A PHD finger family prote 59.2 5.2 0.00018 30.7 2.4 51 274-329 4-58 (64)
100 2vpb_A Hpygo1, pygopus homolog 59.2 5.5 0.00019 31.4 2.6 33 274-311 6-40 (65)
101 2vnf_A ING 4, P29ING4, inhibit 57.9 2 6.9E-05 33.2 -0.1 46 274-328 8-58 (60)
102 2jmi_A Protein YNG1, ING1 homo 57.0 1.5 5.1E-05 37.1 -1.1 47 274-328 24-75 (90)
103 1wem_A Death associated transc 55.2 12 0.00042 29.7 4.0 48 276-331 16-72 (76)
104 2puy_A PHD finger protein 21A; 55.1 1.6 5.5E-05 33.4 -1.1 47 275-330 4-53 (60)
105 2rsd_A E3 SUMO-protein ligase 54.3 2.3 7.7E-05 33.5 -0.4 48 274-328 8-64 (68)
106 3ask_A E3 ubiquitin-protein li 50.1 5.2 0.00018 39.0 1.3 48 276-329 174-225 (226)
107 2ro1_A Transcription intermedi 49.6 2.4 8.2E-05 39.5 -1.1 47 276-330 2-50 (189)
108 1wew_A DNA-binding family prot 48.8 16 0.00056 29.3 3.9 50 274-330 14-73 (78)
109 2kwj_A Zinc finger protein DPF 46.3 5.8 0.0002 34.0 0.9 34 277-315 2-42 (114)
110 2ko5_A Ring finger protein Z; 46.0 10 0.00035 32.8 2.3 45 277-332 29-73 (99)
111 2g6q_A Inhibitor of growth pro 45.1 2.9 9.8E-05 32.7 -1.1 46 274-328 9-59 (62)
112 3v43_A Histone acetyltransfera 44.2 10 0.00035 32.3 2.1 33 276-313 5-43 (112)
113 3v43_A Histone acetyltransfera 43.9 5.1 0.00018 34.2 0.2 46 278-328 63-111 (112)
114 1wil_A KIAA1045 protein; ring 42.9 13 0.00044 31.7 2.4 35 274-314 13-47 (89)
115 2e6s_A E3 ubiquitin-protein li 42.6 4.5 0.00015 33.0 -0.4 45 278-328 28-76 (77)
116 2xb1_A Pygopus homolog 2, B-ce 41.8 11 0.00037 32.2 1.9 51 277-331 4-63 (105)
117 3j1z_P YIIP, cation efflux fam 38.4 86 0.003 30.7 8.0 27 418-444 81-107 (306)
118 1wee_A PHD finger family prote 38.1 22 0.00077 27.9 3.1 49 274-329 14-66 (72)
119 3asl_A E3 ubiquitin-protein li 37.2 4.9 0.00017 32.0 -0.9 46 278-329 20-69 (70)
120 3shb_A E3 ubiquitin-protein li 36.2 4.2 0.00014 33.2 -1.5 26 304-329 49-77 (77)
121 2kgg_A Histone demethylase jar 35.7 9.9 0.00034 28.3 0.6 45 278-327 4-52 (52)
122 3lqh_A Histone-lysine N-methyl 35.2 14 0.00047 34.7 1.6 51 276-331 2-65 (183)
123 3o70_A PHD finger protein 13; 34.2 7.2 0.00025 30.9 -0.4 47 274-328 17-66 (68)
124 3c6w_A P28ING5, inhibitor of g 33.7 5.4 0.00019 30.8 -1.2 45 275-328 8-57 (59)
125 2kwj_A Zinc finger protein DPF 31.7 4.3 0.00015 34.9 -2.3 48 278-331 60-110 (114)
126 1x4i_A Inhibitor of growth pro 30.0 12 0.0004 29.9 0.1 53 274-331 4-57 (70)
127 2ysm_A Myeloid/lymphoid or mix 23.9 10 0.00036 31.9 -1.2 47 278-330 56-105 (111)
128 3kqi_A GRC5, PHD finger protei 21.8 60 0.002 25.7 2.9 48 276-330 10-62 (75)
No 1
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.4e-16 Score=130.22 Aligned_cols=58 Identities=28% Similarity=0.745 Sum_probs=50.7
Q ss_pred CCcccceecccccccCCceEeecCCCCCccceecHhhHHHHHhhcCCCccccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQN 332 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~n 332 (515)
+++..|+||++++++++ .+++||+|+|++|+||.+||++||..+++.+||+|++.|..
T Consensus 13 ~~~~~C~IC~~~~~~~~-~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDES-PLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSS-CEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCeEcCccccCCC-eeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 44568999999886544 46799999999999999999999998877899999999974
No 2
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.59 E-value=3.9e-16 Score=122.69 Aligned_cols=55 Identities=36% Similarity=0.816 Sum_probs=48.5
Q ss_pred CCcccceecccccccCCceEeecCCCCCccceecHhhHHHHHhhcCCCcccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQ 331 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~ 331 (515)
+++..||||+++. + +.+++||.|+|++++||+.||++|+..+++.+||+|+++|.
T Consensus 4 ~~~~~CrIC~~~~--~-~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEEL--G-NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEEC--S-CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCC--C-CceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4567899999873 2 34689999999999999999999999989999999999997
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.10 E-value=8.3e-11 Score=91.61 Aligned_cols=52 Identities=33% Similarity=0.822 Sum_probs=45.6
Q ss_pred CCcccceecccccccCCceEeecCCCCCccceecHhhHHHHHhhcCCCccccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQN 332 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~n 332 (515)
+++..|.||++.+..++....++|+ |.||..||.+|++. +.+||+|+..+..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCM-----HLFHQVCVDQWLIT--NKKCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTS-----CEEEHHHHHHHHHH--CSBCTTTCSBSCS
T ss_pred CCCCCCeeCCccccCCCcEEEeCCC-----CHHHHHHHHHHHHc--CCCCcCcCccccC
Confidence 4467899999998777778889999 99999999999997 5689999999874
No 4
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=7.9e-11 Score=93.49 Aligned_cols=51 Identities=24% Similarity=0.690 Sum_probs=45.1
Q ss_pred CCcccceecccccccCCceEeecCCCCCccceecHhhHHHHHhhcCCCcccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQ 331 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~ 331 (515)
+++..|.||++++..++....++|+ |.||..||.+|++. +.+||+|++.+.
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~w~~~--~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCN-----HEFHAKCVDKWLKA--NRTCPICRADSG 71 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTT-----EEEETTHHHHHHHH--CSSCTTTCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCC-----CHhHHHHHHHHHHc--CCcCcCcCCcCC
Confidence 3456899999999877778899999 99999999999987 679999999876
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=2.2e-10 Score=90.29 Aligned_cols=52 Identities=29% Similarity=0.685 Sum_probs=45.4
Q ss_pred CcccceecccccccCCceEeecCCCCCccceecHhhHHHHHhhcCCCcccccccccccc
Q 010219 275 EEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQNL 333 (515)
Q Consensus 275 ee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~nl 333 (515)
++..|.||++++........++|+ |.||..||.+|++. +.+||+|++.+..+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~-----H~f~~~Ci~~~~~~--~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCK-----HAFHRKCLIKWLEV--RKVCPLCNMPVLQL 65 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTT-----EEEEHHHHHHHHHH--CSBCTTTCCBCSSC
T ss_pred CCCCCcCCCcccCCCCcEEEcCCC-----CEecHHHHHHHHHc--CCcCCCcCcccccc
Confidence 356899999999777777888999 99999999999987 56999999998754
No 6
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.02 E-value=2e-10 Score=95.11 Aligned_cols=51 Identities=29% Similarity=0.683 Sum_probs=45.0
Q ss_pred CCcccceecccccccCCceEeecCCCCCccceecHhhHHHHHhhcCCCcccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQ 331 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~ 331 (515)
+++..|.||++++..++....++|+ |.||..||.+|++. +.+||+|++.+.
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~-----H~Fh~~Ci~~wl~~--~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCH-----HYFHKPCVSIWLQK--SGTCPVCRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTT-----EEEEHHHHHHHHTT--TCBCTTTCCBSS
T ss_pred CCCCCCcccChhhcCCCcEEecCCC-----ChHHHHHHHHHHHc--CCcCcCcCccCC
Confidence 3466899999999887788889999 99999999999986 679999999875
No 7
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.00 E-value=2.5e-10 Score=90.88 Aligned_cols=53 Identities=21% Similarity=0.666 Sum_probs=45.7
Q ss_pred CCcccceecccccccCCceEeecCCCCCccceecHhhHHHHHhhcCCCcccccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQNL 333 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~nl 333 (515)
+++..|.||++.+........++|+ |.||..||.+|++. +.+||+|+..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCN-----HLFHDSCIVPWLEQ--HDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTS-----CEEETTTTHHHHTT--TCSCTTTCCCCCCS
T ss_pred CCCCCCeeCCccccCCCCEEEeCCC-----CeecHHHHHHHHHc--CCcCcCcCCccCCc
Confidence 4466899999999777777889999 99999999999986 57999999998753
No 8
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.99 E-value=1.5e-10 Score=86.17 Aligned_cols=50 Identities=32% Similarity=0.715 Sum_probs=43.7
Q ss_pred CcccceecccccccCCceEeec-CCCCCccceecHhhHHHHHhhcCCCcccccccccc
Q 010219 275 EEAVCRICLVELCEGGETFKME-CSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQ 331 (515)
Q Consensus 275 ee~~CRIClee~ee~d~~l~LP-C~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~ 331 (515)
++..|.||++++.+++....++ |+ |.||..|+.+|++. +.+||+|++.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~-----H~f~~~Ci~~w~~~--~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCG-----HGFHAECVDMWLGS--HSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSC-----CEECTTHHHHTTTT--CCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCC-----CcccHHHHHHHHHc--CCcCcCCCCEeE
Confidence 4567999999998777788888 99 99999999999986 678999998764
No 9
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=7.7e-10 Score=90.10 Aligned_cols=50 Identities=24% Similarity=0.553 Sum_probs=39.1
Q ss_pred cccceeccccccc-----------CCceEeec-CCCCCccceecHhhHHHHHhhcCCCccccccccccc
Q 010219 276 EAVCRICLVELCE-----------GGETFKME-CSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQN 332 (515)
Q Consensus 276 e~~CRIClee~ee-----------~d~~l~LP-C~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~n 332 (515)
++.|.||++++++ ++....++ |+ |.||.+||++||+. +.+||+||+.+..
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~--~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECN-----HSFHNCCMSLWVKQ--NNRCPLCQQDWVV 76 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTS-----CEEEHHHHHHHTTT--CCBCTTTCCBCCE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCC-----CccChHHHHHHHHh--CCCCCCcCCCcch
Confidence 3457777776643 34466666 99 99999999999987 5799999999873
No 10
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.84 E-value=1.8e-09 Score=91.69 Aligned_cols=51 Identities=24% Similarity=0.463 Sum_probs=41.1
Q ss_pred ccceecccccccCC---------------ceEeecCCCCCccceecHhhHHHHHhh---cCCCccccccccccc
Q 010219 277 AVCRICLVELCEGG---------------ETFKMECSCKGELALAHKECAIKWFTM---KGNKTCDVCKQEVQN 332 (515)
Q Consensus 277 ~~CRIClee~ee~d---------------~~l~LPC~CkGslh~~H~~CL~kWL~~---kgn~tCpLCk~~~~n 332 (515)
..|.||++.+.+.. ....++|+ |.||.+||.+|+.. +.+.+||+|+..|..
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-----H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCS-----HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSC-----CEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCC-----CcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 47999999985532 22368899 99999999999964 346799999999874
No 11
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.82 E-value=2.5e-09 Score=79.35 Aligned_cols=50 Identities=20% Similarity=0.502 Sum_probs=41.8
Q ss_pred CcccceecccccccC-CceEeecCCCCCccceecHhhHHHHHhhcCCCcccccccccc
Q 010219 275 EEAVCRICLVELCEG-GETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQ 331 (515)
Q Consensus 275 ee~~CRIClee~ee~-d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~ 331 (515)
++..|.||++.+.++ +....++|+ |.||..|+.+|++. +..||+|++.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCG-----HLLHRTCYEEMLKE--GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTS-----CEEETTHHHHHHHH--TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCC-----CcccHHHHHHHHHc--CCcCCCCCCcCC
Confidence 356799999988543 346788999 99999999999998 488999998874
No 12
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.77 E-value=5.2e-09 Score=90.48 Aligned_cols=49 Identities=18% Similarity=0.407 Sum_probs=40.4
Q ss_pred cccceecccccccC---------------CceEeecCCCCCccceecHhhHHHHHhhcCCCcccccccccc
Q 010219 276 EAVCRICLVELCEG---------------GETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQ 331 (515)
Q Consensus 276 e~~CRIClee~ee~---------------d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~ 331 (515)
++.|.||++.+++. .....++|+ |.||.+||.+||+. +.+||+|++++.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKT--RQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTS-----CEEEHHHHHHHHTT--CSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccC-----cEECHHHHHHHHHc--CCcCcCCCCcce
Confidence 35699999887543 125668999 99999999999987 789999999975
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=5.8e-09 Score=80.22 Aligned_cols=51 Identities=20% Similarity=0.473 Sum_probs=42.0
Q ss_pred CCcccceecccccccC----CceEeecCCCCCccceecHhhHHHHHhhcCCCcccccccccc
Q 010219 274 EEEAVCRICLVELCEG----GETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQ 331 (515)
Q Consensus 274 Eee~~CRIClee~ee~----d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~ 331 (515)
++...|.||++.+.+. .....++|+ |.||..||++|++. +..||+|++.+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSS-----CEEEHHHHHHHHHH--CSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCC-----ChhcHHHHHHHHHc--CCCCCCCCCccC
Confidence 3456899999988542 234778999 99999999999987 679999999875
No 14
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=2.3e-08 Score=80.40 Aligned_cols=54 Identities=19% Similarity=0.415 Sum_probs=44.5
Q ss_pred CCcccceecccccccCCc-eEeecCCCCCccceecHhhHHHHHhhc-CCCccccccccccc
Q 010219 274 EEEAVCRICLVELCEGGE-TFKMECSCKGELALAHKECAIKWFTMK-GNKTCDVCKQEVQN 332 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~-~l~LPC~CkGslh~~H~~CL~kWL~~k-gn~tCpLCk~~~~n 332 (515)
++...|.||++.+.+.+. ...++|+ |.||..|+.+|++.+ +...||+|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCG-----HTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSS-----CEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred cCCCCCccCCccccccCCCeEECCCC-----ChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 345689999998865443 6788999 999999999999874 35799999998874
No 15
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.69 E-value=7.7e-09 Score=80.29 Aligned_cols=52 Identities=21% Similarity=0.542 Sum_probs=42.8
Q ss_pred CCcccceeccccccc----CCceEeecCCCCCccceecHhhHHHHHhhcCCCccccccccccc
Q 010219 274 EEEAVCRICLVELCE----GGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQN 332 (515)
Q Consensus 274 Eee~~CRIClee~ee----~d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~n 332 (515)
+++..|.||++.+.+ +.....++|+ |.||..|+.+|++. +.+||+|+..+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCC-----ChHhHHHHHHHHHc--CCCCCCCCCccCh
Confidence 346689999998754 2344788999 99999999999987 5799999999873
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.65 E-value=1.7e-08 Score=78.11 Aligned_cols=50 Identities=26% Similarity=0.607 Sum_probs=41.9
Q ss_pred CCcccceecccccccCCceEeecCCCCCccceecHhhHHHHHhhcCCCccccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQN 332 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~n 332 (515)
+++..|.||++.+. +....++|+ |.||..|+.+|++. +..||+|+..+..
T Consensus 3 ~~~~~C~IC~~~~~--~~~~~~~C~-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPS--NYSMALPCL-----HAFCYVCITRWIRQ--NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCC--SCEEETTTT-----EEESTTHHHHHHHH--SCSTTTTCCCCCC
T ss_pred CCCCCCeeCCcccc--CCcEecCCC-----CeeHHHHHHHHHhC--cCcCcCCChhhHh
Confidence 34568999998873 345788999 99999999999987 5799999999874
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=2.3e-08 Score=78.62 Aligned_cols=49 Identities=22% Similarity=0.477 Sum_probs=41.3
Q ss_pred CCcccceecccccccCCceEeecCCCCCccceecHhhHHHHHhhcCCCccccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQN 332 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~n 332 (515)
+++..|.||++.+. +...++|+ |.||..||.+|+.. +..||+|+..+..
T Consensus 13 ~~~~~C~IC~~~~~---~~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCV---HPVSLPCK-----HVFCYLCVKGASWL--GKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCS---SEEEETTT-----EEEEHHHHHHCTTC--SSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccC---CCEEccCC-----CHHHHHHHHHHHHC--CCcCcCcCchhCH
Confidence 34568999998763 35778999 99999999999986 5799999999874
No 18
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.60 E-value=2e-08 Score=76.09 Aligned_cols=50 Identities=20% Similarity=0.482 Sum_probs=41.9
Q ss_pred cccceecccccccC----CceEeecCCCCCccceecHhhHHHHHhhcCCCccccccccccc
Q 010219 276 EAVCRICLVELCEG----GETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQN 332 (515)
Q Consensus 276 e~~CRIClee~ee~----d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~n 332 (515)
+..|.||++.+.+. .....++|+ |.||..|+.+|++. +.+||+|+..+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKINH 56 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCC-----CchhHHHHHHHHHc--CCCCCCCCccCCc
Confidence 55799999988542 334778999 99999999999987 7799999999874
No 19
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=5.5e-08 Score=78.10 Aligned_cols=48 Identities=23% Similarity=0.501 Sum_probs=41.0
Q ss_pred CCcccceecccccccCCceEeecCCCCCccceecHhhHHHHHhhcCCCcccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQ 331 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~ 331 (515)
++...|.||++.+.+ ...++|+ |.||..||.+|+.. ...||+|+..+.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQN---PVVTKCR-----HYFCESCALEHFRA--TPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCS---EEECTTS-----CEEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcC---eeEccCC-----CHhHHHHHHHHHHC--CCcCCCcCcccc
Confidence 345689999988733 5679999 99999999999986 779999999986
No 20
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.58 E-value=5.2e-08 Score=77.41 Aligned_cols=50 Identities=22% Similarity=0.464 Sum_probs=42.2
Q ss_pred CCcccceecccccccCCceEeec-CCCCCccceecHhhHHHHHhhcCCCcccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKME-CSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQ 331 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LP-C~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~ 331 (515)
+++..|.||++.+. +...++ |+ |.||..||.+|++.++...||+|++.+.
T Consensus 13 ~~~~~C~IC~~~~~---~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 13 PDELLCLICKDIMT---DAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CGGGSCSSSCCCCT---TCEECSSSC-----CEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCcCCChHHh---CCeEcCCCC-----CHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 44678999998874 356789 99 9999999999999866689999999765
No 21
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=2.1e-08 Score=78.11 Aligned_cols=47 Identities=21% Similarity=0.672 Sum_probs=40.6
Q ss_pred CcccceecccccccCCceEeecCCCCCccceecHhhHHHHHhhcCCCccccccccccc
Q 010219 275 EEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQN 332 (515)
Q Consensus 275 ee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~n 332 (515)
+...|.||++.+.+ ..++|+ |.||..|+.+|+.. +..||+|++.+..
T Consensus 14 ~~~~C~IC~~~~~~----~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 14 DEEECCICMDGRAD----LILPCA-----HSFCQKCIDKWSDR--HRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCSSSCCSCCS----EEETTT-----EEECHHHHHHSSCC--CSSCHHHHHCTTC
T ss_pred CCCCCeeCCcCccC----cccCCC-----CcccHHHHHHHHHC--cCcCCCcCCcccC
Confidence 35689999988743 789999 99999999999984 7899999998874
No 22
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.55 E-value=9.3e-09 Score=90.82 Aligned_cols=48 Identities=21% Similarity=0.462 Sum_probs=0.0
Q ss_pred ccceecccccccC-------------Cc--eEeecCCCCCccceecHhhHHHHHhhcCCCcccccccccc
Q 010219 277 AVCRICLVELCEG-------------GE--TFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQ 331 (515)
Q Consensus 277 ~~CRIClee~ee~-------------d~--~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~ 331 (515)
+.|.||++++++. ++ +..++|+ |.||.+||.+||+. +.+||+|++++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~-----H~FH~~CI~~Wl~~--~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKT--RQVCPLDNREWE 111 (117)
T ss_dssp ----------------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcC-----ceEcHHHHHHHHHc--CCcCCCCCCeee
Confidence 4799999998542 22 2335899 99999999999987 779999999976
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=7.5e-08 Score=75.24 Aligned_cols=51 Identities=27% Similarity=0.544 Sum_probs=41.9
Q ss_pred CCcccceecccccccCCceEeecCCCCCccceecHhhHHHHHhh-cCCCccccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTM-KGNKTCDVCKQEVQN 332 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~-kgn~tCpLCk~~~~n 332 (515)
+++..|.||++.+. +...++|+ |.||..|+.+|++. +++..||+|+..+..
T Consensus 18 ~~~~~C~IC~~~~~---~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDILQ---KPVTIDCG-----HNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBCS---SEEECTTC-----CEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcccC---CeEEcCCC-----ChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 34678999998774 35678999 99999999999973 346799999999873
No 24
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.50 E-value=4.9e-08 Score=80.04 Aligned_cols=51 Identities=24% Similarity=0.537 Sum_probs=40.7
Q ss_pred CcccceecccccccCCceEeecCCCCCccceecHhhHHHHHhhcCCCccccccccccc
Q 010219 275 EEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQN 332 (515)
Q Consensus 275 ee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~n 332 (515)
....|.||++.+..+ . .-..|+ |.||.+||.+||+.+.+.+||+|++++..
T Consensus 14 ~i~~C~IC~~~i~~g-~-~C~~C~-----h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 14 AVKICNICHSLLIQG-Q-SCETCG-----IRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSCBCSSSCCBCSSS-E-ECSSSC-----CEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCcCcchhhHcccC-C-ccCCCC-----chhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 346799999888543 2 222677 99999999999998777899999998874
No 25
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=1.1e-07 Score=74.91 Aligned_cols=49 Identities=24% Similarity=0.536 Sum_probs=40.9
Q ss_pred CCcccceecccccccCCceEee-cCCCCCccceecHhhHHHHHhhcCCCccccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKM-ECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQN 332 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~L-PC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~n 332 (515)
+++..|.||++.+.+ ...+ +|+ |.||..||.+|++. +..||+|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 13 TPYILCSICKGYLID---ATTITECL-----HTFCKSCIVRHFYY--SNRCPKCNIVVHQ 62 (72)
T ss_dssp CGGGSCTTTSSCCSS---CEECSSSC-----CEECHHHHHHHHHH--CSSCTTTCCCCCS
T ss_pred CCCCCCCCCChHHHC---cCEECCCC-----CHHHHHHHHHHHHc--CCcCCCcCcccCc
Confidence 346789999988743 3444 999 99999999999987 6799999999874
No 26
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=1.2e-07 Score=73.32 Aligned_cols=50 Identities=20% Similarity=0.592 Sum_probs=41.0
Q ss_pred CCcccceecccccccCCceEeecCCCCCccceecHhhHHHHHhhcCCCccccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQN 332 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~n 332 (515)
+++..|.||++.+.+ ...++|+ |.||..|+.+|+. +++..||+|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCS---PKQTECG-----HRFCESCMAALLS-SSSPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESS---CCCCSSS-----CCCCHHHHHHHHT-TSSCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcC---eeECCCC-----CHHHHHHHHHHHH-hCcCCCCCCCcCCCh
Confidence 446789999988743 3458999 9999999999997 457789999998863
No 27
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=3.7e-07 Score=69.83 Aligned_cols=45 Identities=27% Similarity=0.570 Sum_probs=36.9
Q ss_pred CCcccceecccccccCCceEeecCCCCCccceecHhhHHHHHhhc-CCCccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMK-GNKTCDVC 326 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~k-gn~tCpLC 326 (515)
+++..|.||++.+. +...++|+ |.||..||.+|++.+ ++..||+|
T Consensus 18 ~~~~~C~IC~~~~~---~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQ---KPVTIDCG-----HNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCS---SCEECTTS-----SEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhC---CeEEeCCC-----CcchHHHHHHHHHcCCCCCcCcCC
Confidence 44678999998874 35677999 999999999999843 46799998
No 28
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.38 E-value=3.2e-07 Score=72.79 Aligned_cols=50 Identities=20% Similarity=0.373 Sum_probs=42.0
Q ss_pred CCcccceecccccccCCceEeecCCCCCccceecHhhHHHHHhhcCCCccccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQN 332 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~n 332 (515)
.++..|.||++.+. +...++|+ |.|++.||.+|+. +++.+||+|+..+..
T Consensus 6 ~~~~~C~IC~~~~~---~Pv~~~Cg-----H~fc~~Ci~~~~~-~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMK---DPVIVSTG-----QTYERSSIQKWLD-AGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCS---SEEEETTT-----EEEEHHHHHHHHT-TTCCBCTTTCCBCSS
T ss_pred cccCCCCCcccccc---CCEEcCCC-----CeecHHHHHHHHH-HCcCCCCCCcCCCCh
Confidence 44678999998763 35778999 9999999999997 367899999998863
No 29
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.38 E-value=2.9e-07 Score=75.23 Aligned_cols=50 Identities=22% Similarity=0.464 Sum_probs=42.7
Q ss_pred CCcccceecccccccCCceEeec-CCCCCccceecHhhHHHHHhhcCCCcccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKME-CSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQ 331 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LP-C~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~ 331 (515)
+++..|.||++.+. +...++ |+ |.|+..||.+|+..+++..||+|+..+.
T Consensus 11 ~~~~~C~IC~~~~~---~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMT---DAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECS---SCEECTTTC-----CEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhc---CceECCCCC-----CHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 45678999998774 357789 99 9999999999998777789999999974
No 30
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.37 E-value=4.1e-07 Score=72.13 Aligned_cols=50 Identities=28% Similarity=0.574 Sum_probs=41.6
Q ss_pred CcccceecccccccCCceEeecCCCCCccceecHhhHHHHHhhc----CCCccccccccccc
Q 010219 275 EEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMK----GNKTCDVCKQEVQN 332 (515)
Q Consensus 275 ee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~k----gn~tCpLCk~~~~n 332 (515)
++..|.||++.+.+ ...++|+ |.||..|+.+|+... +...||+|+..+..
T Consensus 18 ~~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLELLKE---PVSADCN-----HSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSCCSS---CEECTTS-----CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChhhCc---ceeCCCC-----CHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 35689999988743 4578999 999999999999874 37899999999873
No 31
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=4.1e-07 Score=72.14 Aligned_cols=50 Identities=30% Similarity=0.644 Sum_probs=41.7
Q ss_pred CcccceecccccccCCceEeecCCCCCccceecHhhHHHHHhh----cCCCccccccccccc
Q 010219 275 EEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTM----KGNKTCDVCKQEVQN 332 (515)
Q Consensus 275 ee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~----kgn~tCpLCk~~~~n 332 (515)
+...|.||++.+.+ ...++|+ |.||..|+.+|+.. .+...||+|+..+..
T Consensus 18 ~~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLTQ---PLSLDCG-----HSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCSS---CBCCSSS-----CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccCC---ceeCCCC-----CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 45689999988743 4568999 99999999999986 357899999999874
No 32
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=3.3e-07 Score=68.34 Aligned_cols=45 Identities=33% Similarity=0.735 Sum_probs=36.7
Q ss_pred CCcccceecccccccCCceEeecCCCCCccceecHhhHHHHHhh-cCCCccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTM-KGNKTCDVC 326 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~-kgn~tCpLC 326 (515)
+++..|.||++.+.+ ...++|+ |.||..||.+|+.. +++..||+|
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKE---PVIIECG-----HNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSS---CCCCSSC-----CCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCc---cEeCCCC-----CccCHHHHHHHHHhcCCCCCCCCC
Confidence 345689999988744 3568999 99999999999873 467899998
No 33
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.32 E-value=1.7e-07 Score=82.81 Aligned_cols=48 Identities=21% Similarity=0.618 Sum_probs=40.7
Q ss_pred cccceecccccccCCceEeecCCCCCccceecHhhHHHHHhhcCCCcccccccccccc
Q 010219 276 EAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQNL 333 (515)
Q Consensus 276 e~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~nl 333 (515)
+..|.||++.+. ++..++|+ |.||..||.+|+.. +..||+|+..+...
T Consensus 53 ~~~C~iC~~~~~---~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFI---EAVTLNCA-----HSFCSYCINEWMKR--KIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCS---SEEEETTS-----CEEEHHHHHHHTTT--CSBCTTTCCBCCCE
T ss_pred cCCCcccCcccC---CceECCCC-----CCccHHHHHHHHHc--CCcCCCCCCcCCCC
Confidence 457999998773 36789999 99999999999986 67899999988643
No 34
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.30 E-value=3.3e-07 Score=78.05 Aligned_cols=54 Identities=19% Similarity=0.428 Sum_probs=44.2
Q ss_pred CcccceecccccccC----CceEeecCCCCCccceecHhhHHHHHhhcCCCcccccccccccccc
Q 010219 275 EEAVCRICLVELCEG----GETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQNLPV 335 (515)
Q Consensus 275 ee~~CRIClee~ee~----d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~nlpv 335 (515)
++..|.||++.+.+. .....++|+ |.||..||.+|++. +.+||+|++.+....+
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKINHKRY 63 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTC-----CEEEHHHHHHHHTT--CSBCTTTCCBCTTTCE
T ss_pred CCCCCcccChhhhCccccccCeEecCCC-----ChhhHHHHHHHHHh--CCCCCCCCCcCccccc
Confidence 356899999988542 344789999 99999999999986 6699999999985443
No 35
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.22 E-value=8.2e-07 Score=75.60 Aligned_cols=51 Identities=22% Similarity=0.552 Sum_probs=42.1
Q ss_pred Ccccceeccccccc----CCceEeecCCCCCccceecHhhHHHHHhhcCCCccccccccccc
Q 010219 275 EEAVCRICLVELCE----GGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQN 332 (515)
Q Consensus 275 ee~~CRIClee~ee----~d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~n 332 (515)
+...|.||++.+.+ ......++|+ |.||..|+++|++. +.+||+|+..+..
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKINH 125 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTS-----BEEEHHHHHHHHHH--CSBCTTTCCBCCG
T ss_pred CCCCCCCCCCccccccccCcceEeCCCC-----ChhhHHHHHHHHHc--CCCCCCCCCcCCh
Confidence 35679999998754 2334678999 99999999999987 6799999999874
No 36
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.20 E-value=2.6e-07 Score=73.03 Aligned_cols=51 Identities=27% Similarity=0.563 Sum_probs=41.8
Q ss_pred CCcccceecccccccCCceEeecCCCCCccceecHhhHHHHHhhc-----CCCccccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMK-----GNKTCDVCKQEVQN 332 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~k-----gn~tCpLCk~~~~n 332 (515)
+++..|.||++.+.+ ...++|+ |.||..|+.+|++.+ +...||+|+..+..
T Consensus 10 ~~~~~C~IC~~~~~~---p~~l~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTE---PLSLDCG-----HSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSS---CCCCSSS-----CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCC---eeECCCC-----CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 346689999988743 4568999 999999999999862 36799999999873
No 37
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.18 E-value=8.3e-07 Score=68.38 Aligned_cols=51 Identities=16% Similarity=0.360 Sum_probs=40.1
Q ss_pred cccceeccc-ccccCCc-eEeecCCCCCccceecHhhHHHHHhhcCCCccccccccccc
Q 010219 276 EAVCRICLV-ELCEGGE-TFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQN 332 (515)
Q Consensus 276 e~~CRICle-e~ee~d~-~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~n 332 (515)
+..|.||++ .+.+... ...++|+ |.||..|+.+|+.. ++..||+|+..+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVR-GAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTC-----CCEEHHHHHHHHHT-TSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCC-----CHhHHHHHHHHHHc-CCCcCCCCCCcccc
Confidence 457999998 5544322 2467999 99999999999874 56789999999874
No 38
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.17 E-value=7.7e-07 Score=74.72 Aligned_cols=49 Identities=29% Similarity=0.595 Sum_probs=40.7
Q ss_pred CcccceecccccccCCceEe-ecCCCCCccceecHhhHHHHHhhcCCCccccccccccc
Q 010219 275 EEAVCRICLVELCEGGETFK-MECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQN 332 (515)
Q Consensus 275 ee~~CRIClee~ee~d~~l~-LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~n 332 (515)
++..|.||++.+. +... ++|+ |.||..||.+|+..+ ...||+|+..+..
T Consensus 21 ~~~~C~IC~~~~~---~p~~~~~Cg-----H~FC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLR---DARLCPHCS-----KLCCFSCIRRWLTEQ-RAQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCS---SEEECTTTC-----CEEEHHHHHHHHHHT-CSBCTTTCCBCCG
T ss_pred CCCCCccCCcccc---CccccCCCC-----ChhhHHHHHHHHHHC-cCCCCCCCCcCCH
Confidence 4568999998874 3455 8999 999999999999973 2799999999863
No 39
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.16 E-value=6.6e-07 Score=74.32 Aligned_cols=48 Identities=21% Similarity=0.467 Sum_probs=40.0
Q ss_pred CcccceecccccccCCceEee-cCCCCCccceecHhhHHHHHhhcCCCccccccccccc
Q 010219 275 EEAVCRICLVELCEGGETFKM-ECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQN 332 (515)
Q Consensus 275 ee~~CRIClee~ee~d~~l~L-PC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~n 332 (515)
++..|.||++.+.+ ...+ +|+ |.||..|+.+|+.. +..||+|+..+..
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNI---AMIIPQCS-----HNYCSLCIRKFLSY--KTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSS---EEECTTTC-----CEEEHHHHHHHHTT--CCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCC---cCEECCCC-----CHhhHHHHHHHHHC--CCCCCCCCCcCCh
Confidence 35689999988743 4555 899 99999999999986 6799999998874
No 40
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.15 E-value=8.5e-07 Score=80.11 Aligned_cols=49 Identities=33% Similarity=0.662 Sum_probs=40.5
Q ss_pred CCcccceecccccccCCceEee-cCCCCCccceecHhhHHHHHhhcCCCcccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKM-ECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQ 331 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~L-PC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~ 331 (515)
+++..|.||++.+.+ ...+ +|+ |.||..||.+|+.. ++..||+|+..+.
T Consensus 52 ~~~~~C~IC~~~~~~---p~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 52 HSELMCPICLDMLKN---TMTTKECL-----HRFCADCIITALRS-GNKECPTCRKKLV 101 (165)
T ss_dssp HHHHBCTTTSSBCSS---EEEETTTC-----CEEEHHHHHHHHHT-TCCBCTTTCCBCC
T ss_pred CCCCCCcccChHhhC---cCEeCCCC-----ChhHHHHHHHHHHh-CcCCCCCCCCcCC
Confidence 346689999988743 4555 999 99999999999984 5789999999985
No 41
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.11 E-value=1.7e-06 Score=73.04 Aligned_cols=48 Identities=21% Similarity=0.580 Sum_probs=40.4
Q ss_pred CcccceecccccccCCceEee-cCCCCCccceecHhhHHHHHhhcCCCccccccccccc
Q 010219 275 EEAVCRICLVELCEGGETFKM-ECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQN 332 (515)
Q Consensus 275 ee~~CRIClee~ee~d~~l~L-PC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~n 332 (515)
++..|.||++.+.+ ...+ +|+ |.||..||.+|+.. +..||+|+..+..
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFID---ATTIIECL-----HSFCKTCIVRYLET--SKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSS---EEEETTTC-----CEEEHHHHHHHHTS--CSBCTTTCCBSCS
T ss_pred CcCCCccCChHHhC---cCEeCCCC-----ChhhHHHHHHHHHh--CCcCcCCCccccc
Confidence 35689999988743 4555 999 99999999999986 5899999999874
No 42
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.10 E-value=1.2e-06 Score=75.62 Aligned_cols=49 Identities=18% Similarity=0.408 Sum_probs=41.0
Q ss_pred CcccceecccccccCCceEeecCCCCCccceecHhhHHHHHhhcCCCccccccccccc
Q 010219 275 EEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQN 332 (515)
Q Consensus 275 ee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~n 332 (515)
++..|.||++.+. +...++|+ |.||..||.+|+.. +...||+|+..+..
T Consensus 51 ~~~~C~IC~~~~~---~p~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVF---RPITTVCQ-----HNVCKDCLDRSFRA-QVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCS---SEEECTTS-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHc---CcEEeeCC-----CcccHHHHHHHHhH-CcCCCCCCCccCCC
Confidence 3568999998774 35778999 99999999999983 45699999999874
No 43
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.97 E-value=1.3e-06 Score=74.42 Aligned_cols=50 Identities=24% Similarity=0.519 Sum_probs=41.8
Q ss_pred CCcccceecccccccCCceEeecCCCCCccceecHhhHHHHHhhcCCCccccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQN 332 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~n 332 (515)
+++..|.||++.+. +...++|+ |.|+..||.+|+.. ++..||+|+..+..
T Consensus 13 ~~~~~C~iC~~~~~---~p~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILV---EPVTLPCN-----HTLCKPCFQSTVEK-ASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCS---SCEECTTS-----CEECHHHHCCCCCT-TTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccC---ceeEcCCC-----CHHhHHHHHHHHhH-CcCCCCCCCcccCc
Confidence 34678999998774 35778999 99999999999973 56799999999874
No 44
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.95 E-value=2.9e-06 Score=87.62 Aligned_cols=53 Identities=30% Similarity=0.688 Sum_probs=39.9
Q ss_pred CCcccceecccccccCCceEee-----cCCCCCccceecHhhHHHHHhhcCC---------Ccccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKM-----ECSCKGELALAHKECAIKWFTMKGN---------KTCDVCKQEVQ 331 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~L-----PC~CkGslh~~H~~CL~kWL~~kgn---------~tCpLCk~~~~ 331 (515)
++...|.||++.+.+++.+-.. .|+ |.||..||.+||+...+ ..||.|++.+.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~-----h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCV-----LKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCC-----CCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccC-----CccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 3466899999888664443322 466 99999999999986332 58999999876
No 45
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.95 E-value=2.1e-06 Score=71.97 Aligned_cols=49 Identities=29% Similarity=0.647 Sum_probs=39.8
Q ss_pred cccceecccccccCCceEeecCCCCCccceecHhhHHHHHhhc-CCCccccccccccc
Q 010219 276 EAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMK-GNKTCDVCKQEVQN 332 (515)
Q Consensus 276 e~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~k-gn~tCpLCk~~~~n 332 (515)
...|.||++.+.+ ...++|+ |.||..|+.+|+..+ +...||+|+..+..
T Consensus 21 ~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKE---PVSTKCD-----HIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSS---CCBCTTS-----CCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcC---eEECCCC-----CHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 4579999987743 4568999 999999999999863 34689999998763
No 46
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.90 E-value=4.8e-06 Score=75.31 Aligned_cols=49 Identities=18% Similarity=0.480 Sum_probs=40.9
Q ss_pred CcccceecccccccCCceEeecCCCCCccceecHhhHHHHHhhcCCCccccccccccc
Q 010219 275 EEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQN 332 (515)
Q Consensus 275 ee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~n 332 (515)
++..|.||++.+. +...++|+ |.|+..||.+|+.. +...||+|+..+..
T Consensus 77 ~~~~C~IC~~~~~---~pv~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 77 QSFMCVCCQELVY---QPVTTECF-----HNVCKDCLQRSFKA-QVFSCPACRHDLGQ 125 (150)
T ss_dssp HHTBCTTTSSBCS---SEEECTTS-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCT
T ss_pred cCCEeecCChhhc---CCEEcCCC-----CchhHHHHHHHHHh-CCCcCCCCCccCCC
Confidence 3568999998773 35668999 99999999999984 45689999999874
No 47
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.88 E-value=1.1e-05 Score=69.38 Aligned_cols=50 Identities=28% Similarity=0.485 Sum_probs=40.9
Q ss_pred CCcccceecccccccCCceEeecCCCCCccceecHhhHHHHHhhcCCCccccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQN 332 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~n 332 (515)
+++..|.||++.+. +...++|+ |.|+..||.+|+..+ +..||+|+..+..
T Consensus 16 ~~~~~C~IC~~~~~---~p~~~~Cg-----H~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMALR---EAVQTPCG-----HRFCKACIIKSIRDA-GHKCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBCS---SEEECTTS-----CEEEHHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred CCCCCCCcCChhhc---CeEECCcC-----ChhhHHHHHHHHhhC-CCCCCCCCCCcCH
Confidence 44678999998763 34678999 999999999999863 3489999998874
No 48
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.82 E-value=6.6e-06 Score=70.08 Aligned_cols=49 Identities=18% Similarity=0.493 Sum_probs=40.7
Q ss_pred CcccceecccccccCCceEeecCCCCCccceecHhhHHHHHhhcCCCccccccccccc
Q 010219 275 EEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQN 332 (515)
Q Consensus 275 ee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~n 332 (515)
++..|.||++.+. ++..++|+ |.||..||.+|+.. .+..||+|+..+..
T Consensus 22 ~~~~C~IC~~~~~---~p~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILA---DPVETSCK-----HLFCRICILRCLKV-MGSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCS---SEEECTTS-----CEEEHHHHHHHHHH-TCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhc---CcEEcCCC-----CcccHHHHHHHHhH-CcCcCCCCCCCCCH
Confidence 3568999998773 35668999 99999999999986 35689999999874
No 49
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.77 E-value=4.3e-05 Score=64.94 Aligned_cols=49 Identities=6% Similarity=0.109 Sum_probs=41.8
Q ss_pred CCcccceecccccccCCceEeecCCCCCccceecHhhHHHHHhhcCCCccccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQN 332 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~n 332 (515)
.++..|.||++-+. ++..++|+ |.|-+.||.+|+.. +.+||+|+..+..
T Consensus 27 p~~~~CpI~~~~m~---dPV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMT---DPVRLPSG-----TIMDRSIILRHLLN--SPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCS---SEEEETTT-----EEEEHHHHHHHTTS--CSBCSSSCCBCCT
T ss_pred cHhhCCcCccCccc---CCeECCCC-----CEEchHHHHHHHHc--CCCCCCCCCCCCh
Confidence 45789999997763 46889999 99999999999984 7899999998874
No 50
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.77 E-value=3e-05 Score=63.70 Aligned_cols=49 Identities=6% Similarity=0.089 Sum_probs=41.6
Q ss_pred CCcccceecccccccCCceEeecCCCCCccceecHhhHHHHHhhcCCCccccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQN 332 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~n 332 (515)
.++..|.||++-+. ++..++|+ |.|-+.||.+|+.. +.+||+|+..+..
T Consensus 12 p~~~~CpI~~~~m~---dPV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMT---DPVRLPSG-----TVMDRSIILRHLLN--SPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCS---SEEECTTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCCG
T ss_pred chheECcccCchhc---CCeECCCC-----CEECHHHHHHHHhc--CCCCCCCcCCCCh
Confidence 35789999997763 46889999 99999999999986 6799999998763
No 51
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.74 E-value=1.6e-05 Score=64.99 Aligned_cols=54 Identities=19% Similarity=0.363 Sum_probs=41.6
Q ss_pred CcccceecccccccCCceEeec--CCCCCccceecHhhHHHHHhhcCCCcccccccccccccc
Q 010219 275 EEAVCRICLVELCEGGETFKME--CSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQNLPV 335 (515)
Q Consensus 275 ee~~CRIClee~ee~d~~l~LP--C~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~nlpv 335 (515)
++..|.||++.+... +...+| |+ |.|+..|+.+|... ++..||+||+.|..-+.
T Consensus 10 ~~~~CpICle~~~~~-d~~~~p~~CG-----H~fC~~Cl~~~~~~-~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 10 DPVECPLCMEPLEID-DINFFPCTCG-----YQICRFCWHRIRTD-ENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCBCTTTCCBCCTT-TTTCCSSTTS-----CCCCHHHHHHHTTS-SCSBCTTTCCBCSSCSS
T ss_pred cCCcCCccCccCccc-cccccccCCC-----CCcCHHHHHHHHhc-CCCCCCCCCCccCCCch
Confidence 456899999977432 334455 77 99999999999863 57899999999986543
No 52
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.70 E-value=2.1e-05 Score=81.95 Aligned_cols=49 Identities=20% Similarity=0.533 Sum_probs=41.4
Q ss_pred cccceecccccccCCceEeecCCCCCccceecHhhHHHHHhhcCCCcccccccccccc
Q 010219 276 EAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQNL 333 (515)
Q Consensus 276 e~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~nl 333 (515)
...|.||++.. .++..+||+ |.||..|+.+|+.. ++..||+|+..+...
T Consensus 332 ~~~C~ICle~~---~~pv~lpCG-----H~FC~~Ci~~wl~~-~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAEND---KDVKIEPCG-----HLMCTSCLTSWQES-EGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSB---CCEEEETTC-----CEECHHHHHHHHHH-TCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCC---CCeEEeCCC-----ChhhHHHHHHHHhc-CCCCCCCCCCccCCc
Confidence 46899999876 346789999 99999999999983 477999999998853
No 53
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.63 E-value=1.6e-05 Score=71.24 Aligned_cols=49 Identities=22% Similarity=0.489 Sum_probs=40.5
Q ss_pred CCcccceecccccccCCceEeecCCCCCccceecHhhHHHHHhhcCCCcccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQ 331 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~ 331 (515)
+++-.|.||++.+.+ ...++|+ |.|+..||.+|++. +...||+|+.++.
T Consensus 29 ~~~~~C~IC~~~~~~---pv~~~Cg-----H~FC~~Ci~~~~~~-~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 29 EAKYLCSACRNVLRR---PFQAQCG-----HRYCSFCLASILSS-GPQNCAACVHEGI 77 (141)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTS-----CEEEHHHHHHHGGG-SCEECHHHHHTTC
T ss_pred CcCcCCCCCChhhcC---cEECCCC-----CccCHHHHHHHHhc-CCCCCCCCCCccc
Confidence 456789999987743 4668999 99999999999974 4569999999764
No 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.61 E-value=3.6e-05 Score=59.94 Aligned_cols=50 Identities=20% Similarity=0.377 Sum_probs=39.3
Q ss_pred CCCcccceecccccccCCceEee--cCCCCCccce-ecHhhHHHHHhhcCCCccccccccccc
Q 010219 273 PEEEAVCRICLVELCEGGETFKM--ECSCKGELAL-AHKECAIKWFTMKGNKTCDVCKQEVQN 332 (515)
Q Consensus 273 ~Eee~~CRIClee~ee~d~~l~L--PC~CkGslh~-~H~~CL~kWL~~kgn~tCpLCk~~~~n 332 (515)
.+....|.||++... +...+ ||+ |. +-..|+.+|.+. +..||+|++.+..
T Consensus 4 ~~~~~~C~IC~~~~~---~~~~~~~pCg-----H~~~C~~C~~~~~~~--~~~CPiCR~~i~~ 56 (63)
T 2vje_B 4 QNLLKPCSLCEKRPR---DGNIIHGRTG-----HLVTCFHCARRLKKA--GASCPICKKEIQL 56 (63)
T ss_dssp GGGGSBCTTTSSSBS---CEEEEETTEE-----EEEECHHHHHHHHHT--TCBCTTTCCBCCE
T ss_pred CCcCCCCcccCCcCC---CeEEEecCCC-----CHhHHHHHHHHHHHh--CCcCCCcCchhhc
Confidence 345678999997642 23344 999 98 899999999975 5789999999874
No 55
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.55 E-value=0.00011 Score=62.25 Aligned_cols=50 Identities=10% Similarity=0.127 Sum_probs=41.0
Q ss_pred CCcccceecccccccCCceEeecCCCCCccceecHhhHHHHHhhcCCCccccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQN 332 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~n 332 (515)
.++..|.||++-+. ++..++|+ -|.|-+.||.+|+.. +.+||+|+..+..
T Consensus 20 p~~~~CpI~~~~m~---dPV~~~cG----~htf~r~cI~~~l~~--~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMC---DPVVLPSS----RVTVDRSTIARHLLS--DQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCS---SEEECTTT----CCEEEHHHHHHHTTT--SCBCTTTCSBCCT
T ss_pred cHhcCCcCcccccc---CCeECCCC----CeEECHHHHHHHHHh--CCCCCCCCCCCCh
Confidence 45779999997763 36778887 288999999999986 6799999998874
No 56
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.47 E-value=7.1e-05 Score=58.43 Aligned_cols=48 Identities=31% Similarity=0.432 Sum_probs=37.7
Q ss_pred CcccceecccccccCCceEee--cCCCCCccce-ecHhhHHHHHhhcCCCccccccccccc
Q 010219 275 EEAVCRICLVELCEGGETFKM--ECSCKGELAL-AHKECAIKWFTMKGNKTCDVCKQEVQN 332 (515)
Q Consensus 275 ee~~CRIClee~ee~d~~l~L--PC~CkGslh~-~H~~CL~kWL~~kgn~tCpLCk~~~~n 332 (515)
++..|.||++... +...+ ||+ |. +=.+|+.+|.+. +..||+|++.+..
T Consensus 7 ~~~~C~IC~~~~~---~~~~~~~pCg-----H~~~C~~C~~~~~~~--~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPK---NGCIVHGKTG-----HLMACFTCAKKLKKR--NKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCS---CEEEEETTEE-----EEEECHHHHHHHHHT--TCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCC---CEEEECCCCC-----ChhhHHHHHHHHHHc--CCcCCCcCcchhc
Confidence 4567999997642 33444 999 99 458999999975 6789999999874
No 57
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.45 E-value=2.1e-05 Score=59.58 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=37.4
Q ss_pred CCcccceecccccccCCceEeecCCCCCccceecHhhHHHHHhhcCCCccccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQN 332 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~n 332 (515)
+++..|.||++.+.+ ...++|+ |.|+..|+.+| ...||+|++.+..
T Consensus 4 ~~~~~C~IC~~~~~~---p~~l~Cg-----H~fC~~Ci~~~-----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC---PKLLPCL-----HTLCSGCLEAS-----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBC---CSCSTTS-----CCSBTTTCSSS-----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCC---eEEcCCC-----CcccHHHHccC-----CCCCCcCCcEeec
Confidence 345679999988743 4678999 99999999884 5689999998873
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.43 E-value=2.9e-05 Score=61.99 Aligned_cols=44 Identities=27% Similarity=0.579 Sum_probs=37.2
Q ss_pred CcccceecccccccCCceEeecCCCCCccce-ecHhhHHHHHhhcCCCccccccccccc
Q 010219 275 EEAVCRICLVELCEGGETFKMECSCKGELAL-AHKECAIKWFTMKGNKTCDVCKQEVQN 332 (515)
Q Consensus 275 ee~~CRIClee~ee~d~~l~LPC~CkGslh~-~H~~CL~kWL~~kgn~tCpLCk~~~~n 332 (515)
++..|.||++.+ .+...+||+ |. |...|+.+| ..||+|+..+..
T Consensus 23 ~~~~C~iC~~~~---~~~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRN---IAIVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSB---CCEEEETTC-----CBCCCHHHHTTC------SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCC---CCEEEcCCC-----ChhHHHHhhhcC------ccCCCcCcCccC
Confidence 356899999765 246778999 99 999999999 689999999874
No 59
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.40 E-value=2e-05 Score=67.61 Aligned_cols=45 Identities=20% Similarity=0.401 Sum_probs=37.9
Q ss_pred CcccceecccccccCCceEee-cCCCCCccceecHhhHHHHHhhcCCCcccccccccc
Q 010219 275 EEAVCRICLVELCEGGETFKM-ECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQ 331 (515)
Q Consensus 275 ee~~CRIClee~ee~d~~l~L-PC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~ 331 (515)
++..|.||++.+. ++..+ +|+ |.|+..||.+|+. ..||+|+..+.
T Consensus 21 ~~~~C~IC~~~~~---~pv~~~~Cg-----H~fC~~Ci~~~~~----~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILR---EPVCLGGCE-----HIFCSNCVSDCIG----TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCS---SCBCCCSSS-----CCBCTTTGGGGTT----TBCSSSCCBCS
T ss_pred hCCCCCCCChHhh---CccEeCCCC-----CHHHHHHHHHHhc----CCCcCCCCcCc
Confidence 3568999998773 34666 999 9999999999997 68999999975
No 60
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.34 E-value=0.00018 Score=68.14 Aligned_cols=49 Identities=6% Similarity=-0.010 Sum_probs=40.4
Q ss_pred CcccceecccccccCCceEeecCCCCCccceecHhhHHHHHhhcCCCccccccccccc
Q 010219 275 EEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQN 332 (515)
Q Consensus 275 ee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~n 332 (515)
+.-.|.||++-+. ++.+++|+ |.|-+.||.+|+... ..+||+|+..+..
T Consensus 207 ~~~~c~i~~~~~~---dPv~~~~g-----h~f~~~~i~~~~~~~-~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMR---EPCITPSG-----ITYDRKDIEEHLQRV-GHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCS---SEEECSSC-----CEEETTHHHHHHHHT-CSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhc---CCeECCCC-----CEECHHHHHHHHHHC-CCCCcCCCCCCch
Confidence 4678999997763 46889999 999999999999863 3459999998863
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.08 E-value=0.00034 Score=63.19 Aligned_cols=50 Identities=28% Similarity=0.485 Sum_probs=40.7
Q ss_pred CCcccceecccccccCCceEeecCCCCCccceecHhhHHHHHhhcCCCccccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQN 332 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~n 332 (515)
++.-.|.||++.+.+ +..++|+ |.|...|+.+|+..+ ..+||+|+..+..
T Consensus 16 ~~~~~C~IC~~~~~~---pv~~~Cg-----H~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 16 ESKYECPICLMALRE---AVQTPCG-----HRFCKACIIKSIRDA-GHKCPVDNEILLE 65 (170)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTS-----CEEEHHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred CCCCCCCCCChhhcC---cEECCCC-----CHHHHHHHHHHHHhC-CCCCCCCccCcch
Confidence 446789999987743 4668999 999999999999863 3499999988764
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.08 E-value=3.5e-05 Score=61.36 Aligned_cols=44 Identities=27% Similarity=0.608 Sum_probs=35.4
Q ss_pred CcccceecccccccCCceEeecCCCCCccce-ecHhhHHHHHhhcCCCccccccccccc
Q 010219 275 EEAVCRICLVELCEGGETFKMECSCKGELAL-AHKECAIKWFTMKGNKTCDVCKQEVQN 332 (515)
Q Consensus 275 ee~~CRIClee~ee~d~~l~LPC~CkGslh~-~H~~CL~kWL~~kgn~tCpLCk~~~~n 332 (515)
++..|.||++.+. +...+||+ |. |...|+.+ ...||+|+..+..
T Consensus 24 ~~~~C~IC~~~~~---~~~~~pCg-----H~~~C~~C~~~------~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNI---AIVFVPCG-----HLVTCKQCAEA------VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCC---CBCCSSSC-----CCCBCHHHHHH------CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCC---CEEEecCC-----CHHHHHHHhhC------CCCCccCCceecC
Confidence 3568999997752 35678999 99 99999964 3689999999875
No 63
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.99 E-value=0.00059 Score=56.77 Aligned_cols=48 Identities=15% Similarity=0.367 Sum_probs=38.8
Q ss_pred CCcccceecccccccCCceEeec-CCCCCccceecHhhHHHHHhhc----CCCcccc--cccc
Q 010219 274 EEEAVCRICLVELCEGGETFKME-CSCKGELALAHKECAIKWFTMK----GNKTCDV--CKQE 329 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LP-C~CkGslh~~H~~CL~kWL~~k----gn~tCpL--Ck~~ 329 (515)
.++..|.||++-+. ++..++ |+ |.|-+.||.+|+... +..+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~---dPV~~~~cG-----h~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMK---KPVKNKVCG-----HTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCS---SEEEESSSC-----CEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhc---CCEEcCCCC-----CeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 34678999998763 367786 99 999999999999863 3569999 9866
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.95 E-value=0.00047 Score=54.62 Aligned_cols=45 Identities=22% Similarity=0.435 Sum_probs=36.6
Q ss_pred CCcccceecccccccCCceEeecCCCCCccce-ecHhhHHHHHhhcCCCccccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKMECSCKGELAL-AHKECAIKWFTMKGNKTCDVCKQEVQN 332 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LPC~CkGslh~-~H~~CL~kWL~~kgn~tCpLCk~~~~n 332 (515)
+++..|.||++.. .+...+||+ |. +-..|+.+ ...||+|+..+..
T Consensus 13 ~~~~~C~IC~~~~---~~~v~~pCg-----H~~~C~~C~~~------~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGT---VNWVLLPCR-----HTCLCDGCVKY------FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSC---CCCEETTTT-----BCCSCTTHHHH------CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCC---CCEEEECCC-----ChhhhHHHHhc------CCCCCCCCcchhc
Confidence 4466899999764 346789999 99 99999983 4689999999885
No 65
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=96.90 E-value=0.00072 Score=63.62 Aligned_cols=50 Identities=8% Similarity=0.022 Sum_probs=41.4
Q ss_pred CCcccceecccccccCCceEeecCCCCCccceecHhhHHHHHhhcCCCccccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQN 332 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~n 332 (515)
.++..|.||++-+. ++..++|+ |.|=+.||.+|+...+. +||+|+..+..
T Consensus 104 p~~f~CPI~~elm~---DPV~~~~G-----htfer~~I~~~l~~~~~-tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMR---EPCITPSG-----ITYDRKDIEEHLQRVGH-FDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCS---SEEECTTS-----CEEEHHHHHHHHHHTCS-BCTTTCCBCCG
T ss_pred cHhhcccCccccCC---CCeECCCC-----CEECHHHHHHHHHhCCC-CCCCCcCCCCh
Confidence 35779999997763 46788999 99999999999986444 79999998763
No 66
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.82 E-value=0.00055 Score=66.64 Aligned_cols=50 Identities=26% Similarity=0.570 Sum_probs=39.0
Q ss_pred cccceecccccccCCceEeec-CCCCCccceecHhhHHHHHhhcCCCcccccccccccc
Q 010219 276 EAVCRICLVELCEGGETFKME-CSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQNL 333 (515)
Q Consensus 276 e~~CRIClee~ee~d~~l~LP-C~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~nl 333 (515)
-..|.||.+-...+ ...+ |+ +.||..|+.+|++.+++..||.|+......
T Consensus 180 i~~C~iC~~iv~~g---~~C~~C~-----~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQG---QSCETCG-----IRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSC---EECSSSC-----CEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCC---cccCccC-----hHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 45799998765432 2222 66 899999999999987788999999988754
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.77 E-value=0.00077 Score=55.54 Aligned_cols=50 Identities=18% Similarity=0.501 Sum_probs=38.5
Q ss_pred CcccceecccccccCCceEee-cCCCCCccceecHhhHHHHHhhc---C---CCcccc--ccccc
Q 010219 275 EEAVCRICLVELCEGGETFKM-ECSCKGELALAHKECAIKWFTMK---G---NKTCDV--CKQEV 330 (515)
Q Consensus 275 ee~~CRIClee~ee~d~~l~L-PC~CkGslh~~H~~CL~kWL~~k---g---n~tCpL--Ck~~~ 330 (515)
+...|.||++++... ....+ +|+ |.|-.+|+.+++..+ + ...||. |+..+
T Consensus 4 ~~~~C~IC~~~~~~~-~~~~l~~Cg-----H~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 4 GSSGCKLCLGEYPVE-QMTTIAQCQ-----CIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62 (94)
T ss_dssp SBCCCSSSCCCCBGG-GEEEETTTT-----EEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred CCcCCcccCcccccc-cceEcCCCC-----CcccHHHHHHHHHHHhhcCCcccccCccccCCCCC
Confidence 356799999887443 44444 799 999999999999753 2 358999 99884
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.0019 Score=64.47 Aligned_cols=51 Identities=16% Similarity=0.315 Sum_probs=41.5
Q ss_pred CCcccceecccccccCCceEeecCCCCCccceecHhhHHHHHhhcCCCcccc--cccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDV--CKQEVQ 331 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpL--Ck~~~~ 331 (515)
..+..|.||++-+.+ .+....|+ |.|=+.||.+|+...+...||+ |++.+.
T Consensus 179 ~~el~CPIcl~~f~D--PVts~~CG-----HsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPYEA--PLISRKCN-----HVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBCSS--EEEESSSC-----CEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCcccC--CeeeCCCC-----CcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 446789999987732 33345899 9999999999998767789999 999876
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=96.29 E-value=0.00098 Score=68.15 Aligned_cols=44 Identities=25% Similarity=0.717 Sum_probs=37.2
Q ss_pred CcccceecccccccCCceEeecCCCCCccce-ecHhhHHHHHhhcCCCccccccccccc
Q 010219 275 EEAVCRICLVELCEGGETFKMECSCKGELAL-AHKECAIKWFTMKGNKTCDVCKQEVQN 332 (515)
Q Consensus 275 ee~~CRIClee~ee~d~~l~LPC~CkGslh~-~H~~CL~kWL~~kgn~tCpLCk~~~~n 332 (515)
++..|.||++.+. ++..+||+ |. |...|+.+| ..||+|+..+..
T Consensus 294 ~~~~C~IC~~~~~---~~v~lpCg-----H~~fC~~C~~~~------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEV---SVVFIPCG-----HLVVCQECAPSL------RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBC---CEEEETTC-----CEEECTTTGGGC------SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCC---ceEEcCCC-----ChhHhHHHHhcC------CcCCCCCCCccC
Confidence 3578999998752 46778999 99 999999998 579999999874
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=95.92 E-value=0.0048 Score=48.09 Aligned_cols=46 Identities=7% Similarity=0.031 Sum_probs=38.2
Q ss_pred ccceecccccccCCceEee-cCCCCCccceecHhhHHHHHhhcCCCccccccccccc
Q 010219 277 AVCRICLVELCEGGETFKM-ECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQN 332 (515)
Q Consensus 277 ~~CRIClee~ee~d~~l~L-PC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~n 332 (515)
..|.||++-+. +...+ +|+ |.|-+.||++||+. +.+||++++.+..
T Consensus 4 ~~CpIs~~~m~---dPV~~~~sG-----~~yer~~I~~~l~~--~~~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPR---RPVLSPKSR-----TIFEKSLLEQYVKD--TGNDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCS---SEEEETTTT-----EEEEHHHHHHHHHH--HSBCTTTCCBCCG
T ss_pred EEecCCCCCCC---CCEEeCCCC-----cEEcHHHHHHHHHh--CCCCcCCcCCCCh
Confidence 47999998764 35677 899 99999999999986 4569999998874
No 71
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=95.78 E-value=0.0022 Score=52.00 Aligned_cols=44 Identities=23% Similarity=0.594 Sum_probs=36.2
Q ss_pred cccceecccccccCCceEeecCCCCCccce-ecHhhHHHHHhhcCCCcccccccccccc
Q 010219 276 EAVCRICLVELCEGGETFKMECSCKGELAL-AHKECAIKWFTMKGNKTCDVCKQEVQNL 333 (515)
Q Consensus 276 e~~CRIClee~ee~d~~l~LPC~CkGslh~-~H~~CL~kWL~~kgn~tCpLCk~~~~nl 333 (515)
+..|.||++.. .+...+||+ |. |=..|+.+| ..||+|+..+...
T Consensus 18 ~~~C~IC~~~~---~~~v~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEE---INSTFCPCG-----HTVCCESCAAQL------QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSB---CCEEEETTC-----BCCBCHHHHTTC------SBCTTTCCBCCEE
T ss_pred CCEeEEeCccc---CcEEEECCC-----CHHHHHHHHHhc------CcCCCCCchhhCe
Confidence 56899999765 346789999 99 789999887 3899999999853
No 72
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.64 E-value=0.016 Score=46.23 Aligned_cols=56 Identities=21% Similarity=0.393 Sum_probs=38.4
Q ss_pred CCCCCCcccceecccccccCCceEe-ecCCCCCccceecHhhHHHHHhh--cCCCccccccccccccc
Q 010219 270 EDIPEEEAVCRICLVELCEGGETFK-MECSCKGELALAHKECAIKWFTM--KGNKTCDVCKQEVQNLP 334 (515)
Q Consensus 270 ed~~Eee~~CRIClee~ee~d~~l~-LPC~CkGslh~~H~~CL~kWL~~--kgn~tCpLCk~~~~nlp 334 (515)
++.+..+..|.||... ++++. -.|. ..||..|+...|.. ++...|+.|.......|
T Consensus 6 ~~~~~~~~~C~vC~~~----~~ll~Cd~C~-----~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p~P 64 (66)
T 2lri_C 6 QQNLAPGARCGVCGDG----TDVLRCTHCA-----AAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAP 64 (66)
T ss_dssp TTCCCTTCCCTTTSCC----TTCEECSSSC-----CEECHHHHCTTTCCCCSSSCCCTTTTTCCCCCC
T ss_pred ccCCCCCCCcCCCCCC----CeEEECCCCC-----CceecccCCCccCcCCCCCEECccccCCCccCC
Confidence 3444556789999743 23322 2365 88999999988864 47789999987655443
No 73
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=91.17 E-value=0.15 Score=44.32 Aligned_cols=49 Identities=27% Similarity=0.499 Sum_probs=38.5
Q ss_pred cceecccccccCCceEeecCCCCCccceecHhhHHHHHhhcCCCccccccccccccc
Q 010219 278 VCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQNLP 334 (515)
Q Consensus 278 ~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~nlp 334 (515)
.|.+|--.+ .--.+..||. |.|=.+|+..|.+ ++.++||.|+..+..+-
T Consensus 3 fC~~C~~Pi--~iygRmIPCk-----HvFCydCa~~~~~-~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPI--KVYGRMIPCK-----HVFCYDCAILHEK-KGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBC--SEEEEEETTC-----CEEEHHHHHHHHH-TTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCe--EEEeeecccc-----ccHHHHHHHHHHh-ccCCCCcCcCCeeeeeE
Confidence 466775443 2245789999 9999999999987 36789999999999754
No 74
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=88.10 E-value=0.047 Score=45.53 Aligned_cols=54 Identities=22% Similarity=0.453 Sum_probs=37.3
Q ss_pred CCcccceecccccccCCceEee--cCCCCCccceecHhhHHHHHh------hcCCCccccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKM--ECSCKGELALAHKECAIKWFT------MKGNKTCDVCKQEVQN 332 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~L--PC~CkGslh~~H~~CL~kWL~------~kgn~tCpLCk~~~~n 332 (515)
+++..|.||.....+.++.+.+ .|. ..||..|+..=|. -++...|+.|......
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~-----~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECH-----NLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSC-----CEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCC-----CeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 4567899998664332233333 366 7899999987654 3578899999877653
No 75
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=87.92 E-value=0.17 Score=42.21 Aligned_cols=55 Identities=25% Similarity=0.442 Sum_probs=34.9
Q ss_pred CCcccceecccccccCCceEeecCCCCCccceecHhhHHHHHhhcCCCcccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQ 331 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~ 331 (515)
+++..|.||......+++ ..+-|. +=-..||..|+..=+...+...|+.|.....
T Consensus 23 ~~~~~C~vC~~~~s~~~~-~ll~CD--~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSN-VILFCD--MCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCSSCCSSSSCSEE-EEEECS--SSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCCcCCcCCCCCCCCCC-CEEECC--CCCchhhcccCCCCccCCCceECccccCccc
Confidence 446789999865322222 233332 1115799999875455568899999987654
No 76
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=86.10 E-value=0.36 Score=40.93 Aligned_cols=50 Identities=30% Similarity=0.536 Sum_probs=31.1
Q ss_pred CCCcccceecccccccCCceEeec---CCCCCccceecHhhHHHHHhh--cCCCcccccccccc
Q 010219 273 PEEEAVCRICLVELCEGGETFKME---CSCKGELALAHKECAIKWFTM--KGNKTCDVCKQEVQ 331 (515)
Q Consensus 273 ~Eee~~CRIClee~ee~d~~l~LP---C~CkGslh~~H~~CL~kWL~~--kgn~tCpLCk~~~~ 331 (515)
+++...| ||.... .+. .+. |.|+. .+||..|+. |.. +++..|+.|+..-.
T Consensus 33 ~~e~~yC-iC~~~~--~g~--MI~CD~~dC~~--~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 33 PNEPTYC-LCHQVS--YGE--MIGCDNPDCSI--EWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp SCCCBCS-TTCCBC--CSC--CCCCSCSSCSC--CCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCCCcEE-ECCCCC--CCC--EeEecCCCCCC--CCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 3455677 997653 222 223 33542 589999987 432 36789999976543
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=84.88 E-value=0.4 Score=37.27 Aligned_cols=47 Identities=23% Similarity=0.533 Sum_probs=31.9
Q ss_pred CCcccceecccccccCCceEe-ecCCCCCccceecHhhHHHHHh--hcCCCcccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFK-MECSCKGELALAHKECAIKWFT--MKGNKTCDVCKQE 329 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~-LPC~CkGslh~~H~~CL~kWL~--~kgn~tCpLCk~~ 329 (515)
+.+..|.||... ++.+. -.|. ..||..|+..=+. .++...|+.|..+
T Consensus 9 ~~~~~C~vC~~~----g~ll~CD~C~-----~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG----GEIILCDTCP-----RAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC----SSEEECSSSS-----CEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC----CcEEECCCCC-----hhhhhhccCCCCCCCCCCceECcccccc
Confidence 346689999853 23322 2355 7899999987543 3577899999754
No 78
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=84.64 E-value=0.26 Score=39.72 Aligned_cols=51 Identities=27% Similarity=0.566 Sum_probs=33.5
Q ss_pred CCcccceecccccccCCceEee--cCCCCCccceecHhhHHHHHhhcCCCcccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKM--ECSCKGELALAHKECAIKWFTMKGNKTCDVCKQE 329 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~L--PC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~ 329 (515)
+++..|.||.....++++.+++ .|. ..||..|+..=..-++...|+.|...
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~-----~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCN-----LAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSC-----CEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCC-----CccccccCCCCcCCCCCcCCccCcCc
Confidence 3456899998654222222322 255 68999998754445678899999764
No 79
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=84.23 E-value=0.24 Score=39.44 Aligned_cols=51 Identities=16% Similarity=0.303 Sum_probs=33.1
Q ss_pred CCcccceecccccccCCceEee--cCCCCCccceecHhhHHHHHhh--cCCCcccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKM--ECSCKGELALAHKECAIKWFTM--KGNKTCDVCKQEVQ 331 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~L--PC~CkGslh~~H~~CL~kWL~~--kgn~tCpLCk~~~~ 331 (515)
++...|.||.... . ++.++. .|. .+||..|+..-... .+...|+.|.....
T Consensus 16 ~~~~~C~~C~~~~-~-~~~mi~CD~C~-----~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPD-D-GSPMIGCDDCD-----DWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCC-S-SCCEEECSSSS-----SEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCC-C-CCCEEEcCCCC-----cccccccCCCCccCCCCCCEEChhccCchh
Confidence 3456799997654 2 222322 255 89999998754432 25679999987654
No 80
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=81.12 E-value=0.23 Score=46.70 Aligned_cols=49 Identities=20% Similarity=0.495 Sum_probs=32.6
Q ss_pred CcccceecccccccCCceEeecCCCCCccceecHhhHHHHHh--hcCCCcccccccccc
Q 010219 275 EEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFT--MKGNKTCDVCKQEVQ 331 (515)
Q Consensus 275 ee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~--~kgn~tCpLCk~~~~ 331 (515)
.++.|.+|... ++ .+-|. +=-..||..|+..-+. .+|...|+.|...-.
T Consensus 6 ~~~~C~~C~~~----g~--ll~Cd--~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 6 NEDWCAVCQNG----GD--LLCCE--KCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SCSSBTTTCCC----EE--EEECS--SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCC----Cc--eEEcC--CCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 35679999743 22 22222 2227899999987765 357789999987543
No 81
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=80.61 E-value=0.28 Score=38.08 Aligned_cols=52 Identities=21% Similarity=0.438 Sum_probs=34.4
Q ss_pred CCcccceecccccccCCceEee--cCCCCCccceecHhhHHHHHh-----hcCCCccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKM--ECSCKGELALAHKECAIKWFT-----MKGNKTCDVCKQEV 330 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~L--PC~CkGslh~~H~~CL~kWL~-----~kgn~tCpLCk~~~ 330 (515)
+++..|.||.....++++.+.+ .|. ..||..|+..=+. .++...|+.|....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~-----~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCG-----QGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSC-----CEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCC-----hHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 4467899998764332232322 366 7899999886442 35788999997653
No 82
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=78.72 E-value=0.4 Score=44.08 Aligned_cols=48 Identities=25% Similarity=0.590 Sum_probs=32.7
Q ss_pred CcccceecccccccCCceEe-ecCCCCCccceecHhhHHHHHhh--cCCCcccccccccc
Q 010219 275 EEAVCRICLVELCEGGETFK-MECSCKGELALAHKECAIKWFTM--KGNKTCDVCKQEVQ 331 (515)
Q Consensus 275 ee~~CRIClee~ee~d~~l~-LPC~CkGslh~~H~~CL~kWL~~--kgn~tCpLCk~~~~ 331 (515)
.++.|.+|..+ ++.+. -.|. ..||..|+..-+.. ++...|+.|+..-.
T Consensus 3 ~~~~C~~C~~~----g~ll~Cd~C~-----~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNG----GELLCCEKCP-----KVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCC----SSCEECSSSS-----CEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCC----CeeeecCCCC-----cccCccccCCCCCCCCCCCEECccccCccc
Confidence 35679999843 23222 1244 78999998777653 57789999987543
No 83
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.18 E-value=0.4 Score=40.28 Aligned_cols=52 Identities=15% Similarity=0.294 Sum_probs=33.1
Q ss_pred CCcccceecccccccCCceEee-cCCCCCccceecHhhHHHHHh--hcCCCcccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKM-ECSCKGELALAHKECAIKWFT--MKGNKTCDVCKQEVQ 331 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~L-PC~CkGslh~~H~~CL~kWL~--~kgn~tCpLCk~~~~ 331 (515)
.+...|.||.....+ +.++.- .|. ..||..|+..=|. -++...|+.|.....
T Consensus 14 ~~~~~C~vC~~~~~~-~~ll~CD~C~-----~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~~ 68 (92)
T 2e6r_A 14 IDSYICQVCSRGDED-DKLLFCDGCD-----DNYHIFCLLPPLPEIPRGIWRCPKCILAEC 68 (92)
T ss_dssp CCCCCCSSSCCSGGG-GGCEECTTTC-----CEECSSSSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred cCCCCCccCCCcCCC-CCEEEcCCCC-----chhccccCCCCcccCCCCCcCCccCcCccc
Confidence 445689999865422 222222 366 7899999863332 346789999976543
No 84
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=75.44 E-value=1 Score=38.11 Aligned_cols=46 Identities=22% Similarity=0.444 Sum_probs=27.2
Q ss_pred cccceecccccccCCceEee--cCCCCCccceecHhhHHHHHh-hcCCCcccccccc
Q 010219 276 EAVCRICLVELCEGGETFKM--ECSCKGELALAHKECAIKWFT-MKGNKTCDVCKQE 329 (515)
Q Consensus 276 e~~CRIClee~ee~d~~l~L--PC~CkGslh~~H~~CL~kWL~-~kgn~tCpLCk~~ 329 (515)
...| ||....+. + .++. .|. .+||..|+..=+. ......|+.|+..
T Consensus 28 ~vrC-iC~~~~~~-~-~mi~Cd~C~-----~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 28 VTRC-ICGFTHDD-G-YMICCDKCS-----VWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp BCCC-TTSCCSCS-S-CEEEBTTTC-----BEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CEEe-ECCCccCC-C-cEEEcCCCC-----CcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 3457 78655422 2 2333 265 7999999853111 1235799999753
No 85
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=74.57 E-value=0.8 Score=38.89 Aligned_cols=48 Identities=21% Similarity=0.280 Sum_probs=28.5
Q ss_pred CCcccceecccccccCCceEeecCCCCCccceecHhhHHHHHhh--cCCCccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTM--KGNKTCDVC 326 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~--kgn~tCpLC 326 (515)
++++.|.||....+..+.+.=-.|. +.||..|+..++.. ++...|+.|
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~-----~~~H~~Cl~~~~~~~~~~~W~C~~C 54 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCG-----QHYHGMCLDIAVTPLKRAGWQCPEC 54 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSC-----CEECTTTTTCCCCTTTSTTCCCTTT
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCC-----CCcChHHhCCccccccccCccCCcC
Confidence 3467899998653221112223466 88999999877652 244444443
No 86
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=74.48 E-value=1 Score=36.24 Aligned_cols=49 Identities=31% Similarity=0.594 Sum_probs=30.7
Q ss_pred CCcccceecccccccCCceEeecC---CCCCccceecHhhHHHHHhh--cCCCcccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKMEC---SCKGELALAHKECAIKWFTM--KGNKTCDVCKQEVQ 331 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LPC---~CkGslh~~H~~CL~kWL~~--kgn~tCpLCk~~~~ 331 (515)
++...| ||.... .+. .+.| .|.. .+||..|+. |.. .++..||.|...-.
T Consensus 14 ~~~~~C-~C~~~~--~g~--MI~CD~~~C~~--~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 14 NEPTYC-LCHQVS--YGE--MIGCDNPDCSI--EWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp TSCCCS-TTCCCS--CSS--EECCSCSSCSC--CCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCCEE-ECCCCC--CCC--EeEeeCCCCCC--ccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 446678 897643 222 2333 3532 589999987 432 36789999976543
No 87
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=74.44 E-value=2.3 Score=38.77 Aligned_cols=44 Identities=20% Similarity=0.494 Sum_probs=31.8
Q ss_pred cccceecccccccCCceEee-cCCCCCccceecHhhHHHHHh---------hcCCCccccccc
Q 010219 276 EAVCRICLVELCEGGETFKM-ECSCKGELALAHKECAIKWFT---------MKGNKTCDVCKQ 328 (515)
Q Consensus 276 e~~CRIClee~ee~d~~l~L-PC~CkGslh~~H~~CL~kWL~---------~kgn~tCpLCk~ 328 (515)
++.|+||.++ ++.+-. .|- ..||..||.+=+. ..+...|+.|..
T Consensus 63 ~d~C~vC~~G----G~LlcCD~Cp-----r~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEG----GNLICCDFCH-----NAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCCC----SSEEECSSSC-----CEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCeecccCCC----CcEEeCCCCC-----CeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 5689999754 333322 366 8899999997652 368899999974
No 88
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=73.47 E-value=2.6 Score=37.86 Aligned_cols=46 Identities=22% Similarity=0.479 Sum_probs=30.7
Q ss_pred CCcccceecccccccCCceEee-cCCCCCccceecHhhHHHHH------h---hcCCCccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKM-ECSCKGELALAHKECAIKWF------T---MKGNKTCDVCKQ 328 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~L-PC~CkGslh~~H~~CL~kWL------~---~kgn~tCpLCk~ 328 (515)
..++.|+||.++ ++.+-- .|- +.||..||.+=+ + ..+...|..|.-
T Consensus 55 g~~~~C~vC~dG----G~LlcCd~Cp-----r~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEG----GNLICCDFCH-----NAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCC----SEEEECSSSS-----CEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCC----CeeEecCCCc-----hhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 345679999753 333211 244 899999999742 2 357899999944
No 89
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=71.11 E-value=1.1 Score=40.55 Aligned_cols=51 Identities=18% Similarity=0.351 Sum_probs=31.1
Q ss_pred CCcccceecccccccCCceEee-cCCCCCccceecHhhHHHHHh---hcCCCccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKM-ECSCKGELALAHKECAIKWFT---MKGNKTCDVCKQEV 330 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~L-PC~CkGslh~~H~~CL~kWL~---~kgn~tCpLCk~~~ 330 (515)
++...| ||...+++++..+-. .|. .+||..|+.---. ..+...|+.|+..-
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~-----~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQ-----NWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTC-----CEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCC-----chhChhhcCCchhhccCccCeecCCCcchh
Confidence 346689 998765333322211 244 8999999852211 24578999998754
No 90
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=69.84 E-value=0.65 Score=36.07 Aligned_cols=46 Identities=24% Similarity=0.465 Sum_probs=30.3
Q ss_pred CcccceecccccccCCceEe-ecCCCCCccceecHhhHHHHHh--hcCCCcccccccc
Q 010219 275 EEAVCRICLVELCEGGETFK-MECSCKGELALAHKECAIKWFT--MKGNKTCDVCKQE 329 (515)
Q Consensus 275 ee~~CRIClee~ee~d~~l~-LPC~CkGslh~~H~~CL~kWL~--~kgn~tCpLCk~~ 329 (515)
.+..|.||... ++++. -.|. ..||..|+..=+. .++...|+.|...
T Consensus 8 ~~~~C~vC~~~----g~ll~Cd~C~-----~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDG----GELLCCDTCP-----SSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCC----SSCBCCSSSC-----CCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCCC----CCEEEcCCCC-----HHHcccccCCCcCcCCCCccCChhhcCc
Confidence 45679999743 22222 2355 7799999885443 2467899999764
No 91
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=69.17 E-value=0.79 Score=35.97 Aligned_cols=47 Identities=26% Similarity=0.476 Sum_probs=31.3
Q ss_pred CCcccceecccccccCCceEe-ecCCCCCccceecHhhHHHHHh--hcCCCcccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFK-MECSCKGELALAHKECAIKWFT--MKGNKTCDVCKQE 329 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~-LPC~CkGslh~~H~~CL~kWL~--~kgn~tCpLCk~~ 329 (515)
+.+..|.||... ++++. -.|. ..||..|+..=+. .++...|+.|...
T Consensus 6 ~~~~~C~vC~~~----g~ll~CD~C~-----~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG----GELICCDGCP-----RAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC----SSCEECSSCC-----CEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC----CCEEEcCCCC-----hhhcccccCCCcCcCCCCCeECccccCc
Confidence 346789999853 23322 2355 7899999885443 3467899999753
No 92
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=68.54 E-value=1.6 Score=32.17 Aligned_cols=46 Identities=22% Similarity=0.431 Sum_probs=28.8
Q ss_pred ccceecccccccCCceEe-ecCCCCCccceecHhhHHHHHh--hcCCCccccccc
Q 010219 277 AVCRICLVELCEGGETFK-MECSCKGELALAHKECAIKWFT--MKGNKTCDVCKQ 328 (515)
Q Consensus 277 ~~CRIClee~ee~d~~l~-LPC~CkGslh~~H~~CL~kWL~--~kgn~tCpLCk~ 328 (515)
+.|.||....++ ++.+. -.|. ..||..|+..=+. .++...|+.|..
T Consensus 1 a~C~vC~~~~~~-~~ll~Cd~C~-----~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 1 ARCKVCRKKGED-DKLILCDECN-----KAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCCTTTCCSSCC-SCCEECTTTC-----CEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC-CCEEECCCCC-----hhhCcccCCCCcCCCCCCcEECcCccc
Confidence 369999865422 22222 2355 7899999864332 246778999965
No 93
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.38 E-value=0.81 Score=34.73 Aligned_cols=46 Identities=26% Similarity=0.550 Sum_probs=30.0
Q ss_pred CCcccceecccccccCCceEe-ecCCCCCccceecHhhHHHHHh--hcCCCccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFK-MECSCKGELALAHKECAIKWFT--MKGNKTCDVCKQ 328 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~-LPC~CkGslh~~H~~CL~kWL~--~kgn~tCpLCk~ 328 (515)
+.+..|.||... ++++. -.|. ..||..|+..=+. .++...|+.|..
T Consensus 7 ~~~~~C~vC~~~----g~ll~Cd~C~-----~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS----GQLLMCDTCS-----RVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS----SCCEECSSSS-----CEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC----CeEEEcCCCC-----cceECccCCCCcCCCCCCceEChhhhC
Confidence 345679999853 22222 2355 8899999885443 246678998864
No 94
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=67.55 E-value=4.5 Score=34.68 Aligned_cols=53 Identities=26% Similarity=0.533 Sum_probs=37.4
Q ss_pred Ccccceecccccc--cCCceEee--cCCCCCccceecHhhHHHHHhhcCCCcccccccccccc
Q 010219 275 EEAVCRICLVELC--EGGETFKM--ECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQNL 333 (515)
Q Consensus 275 ee~~CRIClee~e--e~d~~l~L--PC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~nl 333 (515)
....|.||-++.. +++++++. .|+ --+=+.|.+-=.+ .++..||.|+..|...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~-----FPvCrpCyEYErk-eG~q~CpqCktrYkr~ 71 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECG-----FPACRPCYEYERR-EGTQNCPQCKTRYKRL 71 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSC-----CCCCHHHHHHHHH-TSCSSCTTTCCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccC-----ChhhHHHHHHHHh-ccCccccccCCccccc
Confidence 3578999987753 34444432 355 3467889876665 5899999999999853
No 95
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=67.07 E-value=2.7 Score=36.51 Aligned_cols=50 Identities=26% Similarity=0.316 Sum_probs=30.2
Q ss_pred CCcccceecccccccCCceEeecCCCCCccceecHhhHHHHHhh--cCCCcccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTM--KGNKTCDVCKQEVQ 331 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~--kgn~tCpLCk~~~~ 331 (515)
++++.|.+|.. +++ .+-|..++=-..||..|+. |.. +|+..||-|.-..-
T Consensus 13 ~~~~~C~~C~~----~G~--ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 13 MHEDYCFQCGD----GGE--LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp SSCSSCTTTCC----CSE--EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred CCCCCCCcCCC----CCc--EeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 45678999973 233 4456421222689999998 543 46677776654443
No 96
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=63.77 E-value=1.5 Score=46.89 Aligned_cols=53 Identities=15% Similarity=0.125 Sum_probs=29.7
Q ss_pred CCcccceecccccccCCceEeecCCCCCccceecHhhHHHHHhh---cCCCcccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTM---KGNKTCDVCKQEVQ 331 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~---kgn~tCpLCk~~~~ 331 (515)
.+...| ||...++.+ ..++--..|. .+||..|+.-=-.. -+.-.|+.|+....
T Consensus 35 ~~~~yC-~C~~~~d~~-~~MIqCd~C~---~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 90 (488)
T 3kv5_D 35 PPPVYC-VCRQPYDVN-RFMIECDICK---DWFHGSCVGVEEHHAVDIDLYHCPNCAVLHG 90 (488)
T ss_dssp CCCEET-TTTEECCTT-SCEEEBTTTC---CEEEHHHHTCCGGGGGGEEEBCCHHHHHHHC
T ss_pred CCCeEE-eCCCcCCCC-CCeEEccCCC---CceeeeecCcCcccccCCCEEECCCCcCCcC
Confidence 344556 787665323 2333322343 79999998421111 13468999987543
No 97
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=63.35 E-value=2.8 Score=35.39 Aligned_cols=47 Identities=19% Similarity=0.574 Sum_probs=32.0
Q ss_pred CCcccceecccccccCCceEee-cCCCCCccceecHhhHHHHHh--hcCCCcccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKM-ECSCKGELALAHKECAIKWFT--MKGNKTCDVCKQE 329 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~L-PC~CkGslh~~H~~CL~kWL~--~kgn~tCpLCk~~ 329 (515)
+.++.|.+|... ++.+.- .|. ..||..|+..=+. .++...|+.|...
T Consensus 23 ~n~~~C~vC~~~----g~LL~CD~C~-----~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP----GDLVMCNQCE-----FCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS----SCCEECTTSS-----CEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC----CCEEECCCCC-----CceecccCCCCCCCCcCCCcCCccccCC
Confidence 446689999854 233222 355 7899999866553 3577899999864
No 98
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=62.50 E-value=4.5 Score=32.55 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=30.6
Q ss_pred CCcccceecccccccCCceEee--cCCCCCccceecHhhHHHHHhh---cCCCcccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKM--ECSCKGELALAHKECAIKWFTM---KGNKTCDVCKQEVQ 331 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~L--PC~CkGslh~~H~~CL~kWL~~---kgn~tCpLCk~~~~ 331 (515)
++...| ||...++.++ .++. -|. .+||..|+.-=-.. -....|+.|.....
T Consensus 10 ~~~~~C-~C~~~~d~~~-~MIqCd~C~-----~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNH-FMIECGLCQ-----DWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCCCS-TTSCSCCSSS-CEEEBTTTC-----CEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred CCccEE-EcCCccCCCC-ceEEcCCCC-----CcEEeeecCcccccccCCCeEECCCcccccC
Confidence 345567 8987653222 2222 254 89999998522211 24679999987653
No 99
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=59.19 E-value=5.2 Score=30.66 Aligned_cols=51 Identities=14% Similarity=0.214 Sum_probs=31.6
Q ss_pred CCcccceecccccccCCceEee-cCCCCCccceecHhhHHHHHhh---cCCCcccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKM-ECSCKGELALAHKECAIKWFTM---KGNKTCDVCKQE 329 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~L-PC~CkGslh~~H~~CL~kWL~~---kgn~tCpLCk~~ 329 (515)
+++..|.||...+.+++..+.- .|. .+||..|+.--... -....|+.|...
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~-----~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCE-----MWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSC-----CEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCC-----CCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 4567899998776433322211 355 89999997543221 145689988764
No 100
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=59.18 E-value=5.5 Score=31.44 Aligned_cols=33 Identities=27% Similarity=0.683 Sum_probs=20.1
Q ss_pred CCcccceecccccccCCceEeecC--CCCCccceecHhhH
Q 010219 274 EEEAVCRICLVELCEGGETFKMEC--SCKGELALAHKECA 311 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LPC--~CkGslh~~H~~CL 311 (515)
+....|.+|...+..++. -+.| .|+ .+||..|+
T Consensus 6 ~~~~~C~~C~~p~~~~~~--mI~CD~~C~---~WfH~~Cv 40 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQD--AILCEASCQ---KWFHRICT 40 (65)
T ss_dssp ---CBCTTTCSBCCTTSC--EEEBTTTTC---CEEEHHHH
T ss_pred CCcCcCccCCCccCCCCC--eEecccCcc---ccCchhcc
Confidence 445689999988744322 2334 232 79999996
No 101
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=57.90 E-value=2 Score=33.24 Aligned_cols=46 Identities=28% Similarity=0.516 Sum_probs=28.3
Q ss_pred CCcccceecccccccCCceEeec---CCCCCccceecHhhHHHHHhh--cCCCccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKME---CSCKGELALAHKECAIKWFTM--KGNKTCDVCKQ 328 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LP---C~CkGslh~~H~~CL~kWL~~--kgn~tCpLCk~ 328 (515)
++...| ||.... .+. .+. |.|.. .+||..|+. |.. .++..|+.|..
T Consensus 8 ~e~~~C-~C~~~~--~g~--mi~CD~cdC~~--~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 8 NEPTYC-LCHQVS--YGE--MIGCDNPDCSI--EWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp -CCEET-TTTEEC--CSE--EEECSCTTCSS--CEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCEE-ECCCcC--CCC--EEEeCCCCCCC--ceEehhcCC--CCcCCCCCEECcCccC
Confidence 345677 897653 222 233 33532 589999987 443 36789999965
No 102
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=57.03 E-value=1.5 Score=37.07 Aligned_cols=47 Identities=28% Similarity=0.485 Sum_probs=29.5
Q ss_pred CCcccceecccccccCCceEee--cCCCCCccceecHhhHHHHHh--hcCCCcccc-ccc
Q 010219 274 EEEAVCRICLVELCEGGETFKM--ECSCKGELALAHKECAIKWFT--MKGNKTCDV-CKQ 328 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~L--PC~CkGslh~~H~~CL~kWL~--~kgn~tCpL-Ck~ 328 (515)
++...| ||.... .++ ++. -|.|.. .+||..|+. |. ..++..||. |..
T Consensus 24 ~~~~yC-iC~~~~--~g~-MI~CD~c~C~~--eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVS--YGP-MVACDNPACPF--EWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCC--SSS-EECCCSSSCSC--SCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCC--CCC-EEEecCCCCcc--ccCcCccCC--CCcCCCCCccCChhhcc
Confidence 445678 997643 222 222 255653 589999986 33 236789999 874
No 103
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=55.15 E-value=12 Score=29.65 Aligned_cols=48 Identities=17% Similarity=0.265 Sum_probs=29.0
Q ss_pred cccceecccccccCCceEee--cCCCCCccceecHhhHHHHHh-------hcCCCcccccccccc
Q 010219 276 EAVCRICLVELCEGGETFKM--ECSCKGELALAHKECAIKWFT-------MKGNKTCDVCKQEVQ 331 (515)
Q Consensus 276 e~~CRIClee~ee~d~~l~L--PC~CkGslh~~H~~CL~kWL~-------~kgn~tCpLCk~~~~ 331 (515)
...| ||...+. +..++. .|. .+||..|+.-=.. ......|+.|+....
T Consensus 16 ~~~C-~C~~~~~--~~~MI~Cd~C~-----~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 16 ALYC-ICRQPHN--NRFMICCDRCE-----EWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp CCCS-TTCCCCC--SSCEEECSSSC-----CEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CCEE-ECCCccC--CCCEEEeCCCC-----CcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 5567 8976653 222322 254 8999999842111 235789999986543
No 104
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=55.12 E-value=1.6 Score=33.44 Aligned_cols=47 Identities=26% Similarity=0.567 Sum_probs=31.1
Q ss_pred CcccceecccccccCCceEe-ecCCCCCccceecHhhHHHHHh--hcCCCccccccccc
Q 010219 275 EEAVCRICLVELCEGGETFK-MECSCKGELALAHKECAIKWFT--MKGNKTCDVCKQEV 330 (515)
Q Consensus 275 ee~~CRIClee~ee~d~~l~-LPC~CkGslh~~H~~CL~kWL~--~kgn~tCpLCk~~~ 330 (515)
.+..|.||... ++.+. -.|. ..||..|+..=+. .++...|+.|....
T Consensus 4 ~~~~C~vC~~~----g~ll~Cd~C~-----~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS----GQLLMCDTCS-----RVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC----SSCEECSSSS-----CEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCC----CcEEEcCCCC-----cCEECCcCCCCcCCCCCCceEChhccChh
Confidence 35679999753 22222 2355 7899999885443 34678999997654
No 105
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=54.26 E-value=2.3 Score=33.52 Aligned_cols=48 Identities=21% Similarity=0.592 Sum_probs=25.9
Q ss_pred CCcccceecccccccCCceEeecCC---CCCccceecHhhHHHHHh------hcCCCccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKMECS---CKGELALAHKECAIKWFT------MKGNKTCDVCKQ 328 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LPC~---CkGslh~~H~~CL~kWL~------~kgn~tCpLCk~ 328 (515)
++...| ||....+ ++. .+-|- |+ .+||..|+--=-. .-.+..|+.||.
T Consensus 8 e~~v~C-~C~~~~~-~g~--mI~CD~~~C~---~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 8 EAKVRC-ICSSTMV-NDS--MIQCEDQRCQ---VWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp SCEECC-TTCCCSC-CSC--EEECSCTTTC---EEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCCEEe-ECCCCcC-CCC--EEEECCCCCC---CeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 344567 7965432 222 33453 53 6999999631000 002467999974
No 106
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=50.06 E-value=5.2 Score=39.02 Aligned_cols=48 Identities=17% Similarity=0.322 Sum_probs=26.6
Q ss_pred cccceecccccccCCceEe-ecCCCCCccceecHhhHHHHHh--hcC-CCcccccccc
Q 010219 276 EAVCRICLVELCEGGETFK-MECSCKGELALAHKECAIKWFT--MKG-NKTCDVCKQE 329 (515)
Q Consensus 276 e~~CRIClee~ee~d~~l~-LPC~CkGslh~~H~~CL~kWL~--~kg-n~tCpLCk~~ 329 (515)
+..|.+|..... ++..+. -.|. ..||..|+..=|. -+| ...|+.|..+
T Consensus 174 ~c~C~vC~~~~~-~~~lL~CD~C~-----~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 174 VCACHLCGGRQD-PDKQLMCDECD-----MAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TTSCSSSCCCCC---CCEECSSSC-----CEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCCcCCCCCCC-CCCeEEcCCCC-----cceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 347888875432 222222 1355 7899999885443 246 7899999754
No 107
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=49.56 E-value=2.4 Score=39.55 Aligned_cols=47 Identities=19% Similarity=0.503 Sum_probs=30.6
Q ss_pred cccceecccccccCCceEeecCCCCCccceecHhhHHHHHh--hcCCCccccccccc
Q 010219 276 EAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFT--MKGNKTCDVCKQEV 330 (515)
Q Consensus 276 e~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~--~kgn~tCpLCk~~~ 330 (515)
++.|.+|..+ ++.+.--.|. ..||..|+..=+. .+|...|+.|...-
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~-----~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCE-----FCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTC-----CBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCC---CceeECCCCC-----chhccccCCCCcccCCCCCCCCcCccCCC
Confidence 4579999844 2211112244 7899999865443 25778999998763
No 108
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=48.84 E-value=16 Score=29.26 Aligned_cols=50 Identities=24% Similarity=0.519 Sum_probs=28.4
Q ss_pred CCcccceecccccccCCceEeecCC---CCCccceecHhhHHHHHhh-------cCCCccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKMECS---CKGELALAHKECAIKWFTM-------KGNKTCDVCKQEV 330 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LPC~---CkGslh~~H~~CL~kWL~~-------kgn~tCpLCk~~~ 330 (515)
++...| ||.... +++ ....|- |+ .+||..|+.-=-.. -.+..|+.|+..-
T Consensus 14 ~~~~~C-iC~~~~-~~g--~MI~CD~~~C~---~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 14 EIKVRC-VCGNSL-ETD--SMIQCEDPRCH---VWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCCC-SSCCCC-CCS--CEEECSSTTTC---CEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCCEEe-ECCCcC-CCC--CEEEECCccCC---ccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 456678 897653 222 223333 43 59999997421111 1356899998654
No 109
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=46.32 E-value=5.8 Score=34.03 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=21.2
Q ss_pred ccceeccccccc------CCceE-eecCCCCCccceecHhhHHHHH
Q 010219 277 AVCRICLVELCE------GGETF-KMECSCKGELALAHKECAIKWF 315 (515)
Q Consensus 277 ~~CRIClee~ee------~d~~l-~LPC~CkGslh~~H~~CL~kWL 315 (515)
+.|.||+.+..+ .++.+ =..|. ..||..|+..+.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~-----~~~H~~Cl~~~~ 42 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCG-----RSGHPTCLQFTL 42 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSC-----CEECTTTTTCCH
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCC-----CccchhhCCChh
Confidence 479999876422 12222 12366 789999998663
No 110
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=46.01 E-value=10 Score=32.84 Aligned_cols=45 Identities=20% Similarity=0.583 Sum_probs=33.3
Q ss_pred ccceecccccccCCceEeecCCCCCccceecHhhHHHHHhhcCCCccccccccccc
Q 010219 277 AVCRICLVELCEGGETFKMECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQN 332 (515)
Q Consensus 277 ~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~n 332 (515)
-.|..|--+. +.+ ..|+ =||+=..|+..-|+. +..||||++.+..
T Consensus 29 ~nCKsCWf~~----k~L-V~C~----dHYLCl~CLtlmL~~--SdrCpIC~~pLPt 73 (99)
T 2ko5_A 29 QFCKSCWFEN----KGL-VECN----NHYLCLNCLTLLLSV--SNRCPICKMPLPT 73 (99)
T ss_dssp CCCCSSCSCC----SSE-EECS----SCEEEHHHHHHTCSS--SSEETTTTEECCC
T ss_pred ccChhhcccc----CCe-eeec----chhhHHHHHHHHHhh--ccCCcccCCcCCc
Confidence 5699996442 223 3454 299999999987776 7899999999873
No 111
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=45.05 E-value=2.9 Score=32.74 Aligned_cols=46 Identities=28% Similarity=0.525 Sum_probs=28.2
Q ss_pred CCcccceecccccccCCceEeec---CCCCCccceecHhhHHHHHhh--cCCCccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKME---CSCKGELALAHKECAIKWFTM--KGNKTCDVCKQ 328 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LP---C~CkGslh~~H~~CL~kWL~~--kgn~tCpLCk~ 328 (515)
++...| ||.... .+. .+. |.|+. .+||..|+. |.. +++..||.|+.
T Consensus 9 ~e~~yC-~C~~~~--~g~--MI~CD~c~C~~--~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 9 NEPTYC-LCNQVS--YGE--MIGCDNEQCPI--EWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp -CCEET-TTTEEC--CSE--EEECSCTTCSS--CEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCCcEE-ECCCCC--CCC--eeeeeCCCCCc--ccEecccCC--cCcCCCCCEECcCccc
Confidence 345677 897642 232 233 33542 689999987 332 35778999965
No 112
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=44.24 E-value=10 Score=32.35 Aligned_cols=33 Identities=21% Similarity=0.452 Sum_probs=20.8
Q ss_pred cccceecccccc-----cCCceEe-ecCCCCCccceecHhhHHH
Q 010219 276 EAVCRICLVELC-----EGGETFK-MECSCKGELALAHKECAIK 313 (515)
Q Consensus 276 e~~CRIClee~e-----e~d~~l~-LPC~CkGslh~~H~~CL~k 313 (515)
...|.+|+...+ .+++.+. ..|. ..||..||..
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~-----~~~H~~Cl~~ 43 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCG-----NSGHPSCLKF 43 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTC-----CEECHHHHTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcC-----CCCCCchhcC
Confidence 568999987532 1222222 2366 8899999963
No 113
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=43.88 E-value=5.1 Score=34.22 Aligned_cols=46 Identities=24% Similarity=0.432 Sum_probs=28.7
Q ss_pred cceecccccccCCceEe-ecCCCCCccceecHhhHHHHHhh--cCCCccccccc
Q 010219 278 VCRICLVELCEGGETFK-MECSCKGELALAHKECAIKWFTM--KGNKTCDVCKQ 328 (515)
Q Consensus 278 ~CRIClee~ee~d~~l~-LPC~CkGslh~~H~~CL~kWL~~--kgn~tCpLCk~ 328 (515)
.|.||....++++..+. -.|. ..||..|+..=|.. ++...|+.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~-----~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCD-----RGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTC-----CEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCC-----CeeecccCCCCCCCCCCCCeECCCCCC
Confidence 57778654222223222 2365 78999998765542 46789999975
No 114
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=42.86 E-value=13 Score=31.66 Aligned_cols=35 Identities=17% Similarity=0.434 Sum_probs=22.0
Q ss_pred CCcccceecccccccCCceEeecCCCCCccceecHhhHHHH
Q 010219 274 EEEAVCRICLVELCEGGETFKMECSCKGELALAHKECAIKW 314 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~LPC~CkGslh~~H~~CL~kW 314 (515)
..++.|.||.. +.. + ..+||.=-+ +.||..|+.+=
T Consensus 13 ~~D~~C~VC~~-~t~-~--~l~pCRvC~--RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEV-WTA-E--SLFPCRVCT--RVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCC-CCS-S--CCSSCSSSS--SCCCHHHHHHH
T ss_pred CCCcccCcccc-ccc-c--ceecccccc--ccccHhhcccc
Confidence 35678999963 322 2 245533111 78999999885
No 115
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.61 E-value=4.5 Score=32.98 Aligned_cols=45 Identities=24% Similarity=0.403 Sum_probs=28.4
Q ss_pred cceecccccccCCceEee-cCCCCCccceecHhhHHHHHh--hcC-CCccccccc
Q 010219 278 VCRICLVELCEGGETFKM-ECSCKGELALAHKECAIKWFT--MKG-NKTCDVCKQ 328 (515)
Q Consensus 278 ~CRIClee~ee~d~~l~L-PC~CkGslh~~H~~CL~kWL~--~kg-n~tCpLCk~ 328 (515)
.|.||.... ++++++.- .|. ..||..|+..=|. -++ ...|+.|..
T Consensus 28 ~C~vC~~~~-~~~~ll~CD~C~-----~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKH-EPNMQLLCDECN-----VAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCC-CSTTEEECSSSC-----CEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcC-CCCCEEEcCCCC-----ccccccccCCCccCCCCCCCcCCcCccC
Confidence 789997543 22333322 355 7899999874333 245 678999865
No 116
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=41.76 E-value=11 Score=32.21 Aligned_cols=51 Identities=22% Similarity=0.399 Sum_probs=32.2
Q ss_pred ccceecccccccCCceEeecC-CCCCccceecHhhHHHHH--------hhcCCCcccccccccc
Q 010219 277 AVCRICLVELCEGGETFKMEC-SCKGELALAHKECAIKWF--------TMKGNKTCDVCKQEVQ 331 (515)
Q Consensus 277 ~~CRIClee~ee~d~~l~LPC-~CkGslh~~H~~CL~kWL--------~~kgn~tCpLCk~~~~ 331 (515)
..|.||...+..+++ .+.-| .|+ .+||..|+.-=- .......||.|...-.
T Consensus 4 ~~C~iC~~p~~~~~~-mi~Cdd~C~---~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 4 YPCGACRSEVNDDQD-AILCEASCQ---KWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CBCTTTCSBCCTTSC-EEECTTTTC---CEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred CCCCCCCCccCCCCC-EEEecCCcc---cccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 469999988744333 33333 564 799999974110 0124678999987644
No 117
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=38.40 E-value=86 Score=30.67 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010219 418 RFVWVYASFQFALVVLFAHIFYSLVGV 444 (515)
Q Consensus 418 ~yiW~yA~~qF~lvvl~~hiFY~~~~~ 444 (515)
+|+|.+...=|++.+.+.-++..+.++
T Consensus 81 E~l~al~~~~~l~~~~~~i~~eai~~l 107 (306)
T 3j1z_P 81 EPLAALAQSAFIMGSAFLLLFYGGERL 107 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhe
Confidence 678777655555544444444444433
No 118
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=38.10 E-value=22 Score=27.90 Aligned_cols=49 Identities=18% Similarity=0.296 Sum_probs=28.5
Q ss_pred CCcccceecccccccCCceEee--cCCCCCccceecHhhHHHHHh--hcCCCcccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKM--ECSCKGELALAHKECAIKWFT--MKGNKTCDVCKQE 329 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~L--PC~CkGslh~~H~~CL~kWL~--~kgn~tCpLCk~~ 329 (515)
++...| ||...+.. +..++. -|. .+||..|+.-=-. ......|+.|+..
T Consensus 14 ~~~~~C-~C~~~~~~-g~~mI~Cd~C~-----~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 14 NWKVDC-KCGTKDDD-GERMLACDGCG-----VWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SSEECC-TTCCCSCC-SSCEEECSSSC-----EEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred CcceEe-eCCCccCC-CCcEEECCCCC-----CccCCeeeccCccccCCCcEECCCccCC
Confidence 345678 79765422 222322 255 8999999753211 1245689999764
No 119
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=37.15 E-value=4.9 Score=32.00 Aligned_cols=46 Identities=17% Similarity=0.404 Sum_probs=27.2
Q ss_pred cceecccccccCCceEee-cCCCCCccceecHhhHHHHHh--hcC-CCcccccccc
Q 010219 278 VCRICLVELCEGGETFKM-ECSCKGELALAHKECAIKWFT--MKG-NKTCDVCKQE 329 (515)
Q Consensus 278 ~CRIClee~ee~d~~l~L-PC~CkGslh~~H~~CL~kWL~--~kg-n~tCpLCk~~ 329 (515)
.|.||.... +++.++.- .|. ..||..|+..=|. -+| ...|+.|..+
T Consensus 20 ~C~~C~~~~-~~~~ll~CD~C~-----~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQ-DPDKQLMCDECD-----MAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCS-CGGGEEECTTTC-----CEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcC-CCCCEEEcCCCC-----CceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 566776432 22222221 255 7899999874333 245 7789999754
No 120
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=36.18 E-value=4.2 Score=33.25 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=18.5
Q ss_pred ceecHhhHHHHHhh--cCC-Ccccccccc
Q 010219 304 ALAHKECAIKWFTM--KGN-KTCDVCKQE 329 (515)
Q Consensus 304 h~~H~~CL~kWL~~--kgn-~tCpLCk~~ 329 (515)
..||..|+..=|.. ++. ..|+.|+.+
T Consensus 49 ~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 49 MAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp CEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred CccCcccCCCcccCCCCCCceECcCcccc
Confidence 78999998866542 355 789999753
No 121
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=35.72 E-value=9.9 Score=28.31 Aligned_cols=45 Identities=16% Similarity=0.356 Sum_probs=25.8
Q ss_pred cceecccccccCCceEeecCC--CCCccceecHhhHHHHHh--hcCCCcccccc
Q 010219 278 VCRICLVELCEGGETFKMECS--CKGELALAHKECAIKWFT--MKGNKTCDVCK 327 (515)
Q Consensus 278 ~CRIClee~ee~d~~l~LPC~--CkGslh~~H~~CL~kWL~--~kgn~tCpLCk 327 (515)
.|-||...+.++ ... +.|. |. .+||..|+.-=.. ...+..|+.|+
T Consensus 4 ~cc~C~~p~~~~-~~m-I~Cd~~C~---~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDK-VDW-VQCDGGCD---EWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTT-CCE-EECTTTTC---CEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCC-CcE-EEeCCCCC---ccCcccccCCCccccCCCCEECCCCC
Confidence 467887776332 223 3343 43 7999999753221 12567888885
No 122
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=35.23 E-value=14 Score=34.69 Aligned_cols=51 Identities=18% Similarity=0.352 Sum_probs=31.8
Q ss_pred cccceecccccccCCc-eEee---cCCCCCccceecHhhHHH------HHh---hcCCCcccccccccc
Q 010219 276 EAVCRICLVELCEGGE-TFKM---ECSCKGELALAHKECAIK------WFT---MKGNKTCDVCKQEVQ 331 (515)
Q Consensus 276 e~~CRIClee~ee~d~-~l~L---PC~CkGslh~~H~~CL~k------WL~---~kgn~tCpLCk~~~~ 331 (515)
+..|.||...+.+++. ...+ .|. .+||..|+.- =+. ....-.|+.|+..-.
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~-----~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCD-----RWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTC-----CEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCC-----cccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 4579999988865542 1122 366 8999999731 010 001568999987654
No 123
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=34.22 E-value=7.2 Score=30.91 Aligned_cols=47 Identities=21% Similarity=0.524 Sum_probs=27.7
Q ss_pred CCcccceecccccccCCceEee--cCCCCCccceecHhhHHHHH-hhcCCCccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFKM--ECSCKGELALAHKECAIKWF-TMKGNKTCDVCKQ 328 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~L--PC~CkGslh~~H~~CL~kWL-~~kgn~tCpLCk~ 328 (515)
.+...| ||...+. ++.++. -|. .+||..|+.-=- ...+...|+.|+.
T Consensus 17 ~~~~~C-iC~~~~~--~~~MIqCd~C~-----~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFA--GRPMIECNECH-----TWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCT--TCCEEECTTTC-----CEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCC--CCCEEECCCCC-----ccccccccCcCcccCCCcEECCCCCC
Confidence 345678 8976542 333332 255 899999975211 1224568888864
No 124
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=33.70 E-value=5.4 Score=30.79 Aligned_cols=45 Identities=33% Similarity=0.619 Sum_probs=28.0
Q ss_pred CcccceecccccccCCceEeecC---CCCCccceecHhhHHHHHhh--cCCCccccccc
Q 010219 275 EEAVCRICLVELCEGGETFKMEC---SCKGELALAHKECAIKWFTM--KGNKTCDVCKQ 328 (515)
Q Consensus 275 ee~~CRIClee~ee~d~~l~LPC---~CkGslh~~H~~CL~kWL~~--kgn~tCpLCk~ 328 (515)
+...| ||.... +++ .+.| .|+. .+||..|+. |.. +++..||.|+.
T Consensus 8 e~~yC-~C~~~~--~g~--mi~CD~~~C~~--~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS--YGE--MIGCDNPDCPI--EWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC--CSE--EEECSCTTCSS--CEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC--CCC--eeEeeCCCCCC--CCEecccCC--cccCCCCCEECcCccC
Confidence 35567 897653 232 2333 3532 589999987 432 35778999965
No 125
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=31.70 E-value=4.3 Score=34.87 Aligned_cols=48 Identities=17% Similarity=0.349 Sum_probs=29.6
Q ss_pred cceecccccccCCceEe-ecCCCCCccceecHhhHHHHHh--hcCCCcccccccccc
Q 010219 278 VCRICLVELCEGGETFK-MECSCKGELALAHKECAIKWFT--MKGNKTCDVCKQEVQ 331 (515)
Q Consensus 278 ~CRIClee~ee~d~~l~-LPC~CkGslh~~H~~CL~kWL~--~kgn~tCpLCk~~~~ 331 (515)
.|.||..... ++.++. -.|. ..||..|+..=+. -++...|+.|...+.
T Consensus 60 ~C~~C~~~~~-~~~ll~Cd~C~-----~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 60 SCILCGTSEN-DDQLLFCDDCD-----RGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp CCTTTTCCTT-TTTEEECSSSC-----CEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred ccCcccccCC-CCceEEcCCCC-----ccccccccCCCccCCCCCCeECccccchhh
Confidence 5778865432 223222 2355 7899999875332 246778999977654
No 126
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.97 E-value=12 Score=29.93 Aligned_cols=53 Identities=23% Similarity=0.312 Sum_probs=29.9
Q ss_pred CCcccceecccccccCCceEe-ecCCCCCccceecHhhHHHHHhhcCCCcccccccccc
Q 010219 274 EEEAVCRICLVELCEGGETFK-MECSCKGELALAHKECAIKWFTMKGNKTCDVCKQEVQ 331 (515)
Q Consensus 274 Eee~~CRIClee~ee~d~~l~-LPC~CkGslh~~H~~CL~kWL~~kgn~tCpLCk~~~~ 331 (515)
++...| ||.... .+..+. --|.|.. .+||..|+.-=-...+...|+.|.....
T Consensus 4 ~~~~yC-~C~~~~--~g~MI~CD~cdC~~--~WfH~~Cvgl~~~p~~~w~Cp~C~~~~~ 57 (70)
T 1x4i_A 4 GSSGYC-ICNQVS--YGEMVGCDNQDCPI--EWFHYGCVGLTEAPKGKWYCPQCTAAMK 57 (70)
T ss_dssp SCCCCS-TTSCCC--CSSEECCSCTTCSC--CCEEHHHHTCSSCCSSCCCCHHHHHHHH
T ss_pred CCCeEE-EcCCCC--CCCEeEeCCCCCCc--cCCcccccccCcCCCCCEECCCCCcccc
Confidence 345567 586542 222111 1244533 6899999872111245678999987654
No 127
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=23.87 E-value=10 Score=31.92 Aligned_cols=47 Identities=17% Similarity=0.332 Sum_probs=28.0
Q ss_pred cceecccccccCCceEe-ecCCCCCccceecHhhHHHHHh--hcCCCccccccccc
Q 010219 278 VCRICLVELCEGGETFK-MECSCKGELALAHKECAIKWFT--MKGNKTCDVCKQEV 330 (515)
Q Consensus 278 ~CRIClee~ee~d~~l~-LPC~CkGslh~~H~~CL~kWL~--~kgn~tCpLCk~~~ 330 (515)
.|.||....++ +.++. -.|. ..||..|+..=+. .++...|+.|....
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~-----~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCD-----KGYHTFCLQPVMKSVPTNGWKCKNCRICI 105 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSC-----CEEEGGGSSSCCSSCCSSCCCCHHHHCCS
T ss_pred cccccCccCCC-CCeeECCCCC-----cHHhHHhcCCccccCCCCCcCCcCCcCcC
Confidence 56777654322 22222 2366 8899999875333 24667888886543
No 128
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=21.75 E-value=60 Score=25.66 Aligned_cols=48 Identities=15% Similarity=0.246 Sum_probs=27.4
Q ss_pred cccceecccccccCCceEee--cCCCCCccceecHhhHHHHHhh---cCCCccccccccc
Q 010219 276 EAVCRICLVELCEGGETFKM--ECSCKGELALAHKECAIKWFTM---KGNKTCDVCKQEV 330 (515)
Q Consensus 276 e~~CRIClee~ee~d~~l~L--PC~CkGslh~~H~~CL~kWL~~---kgn~tCpLCk~~~ 330 (515)
...| ||...+..+ ..++. -|. .+||..|+.---.. -..-.|+.|....
T Consensus 10 ~~yC-iC~~~~~~~-~~MI~Cd~C~-----~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 10 PVYC-VCRLPYDVT-RFMIECDACK-----DWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp CEET-TTTEECCTT-SCEEECTTTC-----CEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred eeEE-ECCCcCCCC-CCEEEcCCCC-----CCEecccccccccccCCCCEEECCCCcccC
Confidence 3445 787655322 23332 255 89999998522111 1356899998654
Done!