Query 010220
Match_columns 514
No_of_seqs 163 out of 385
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 22:30:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010220.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010220hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q79_A Poly(A) polymerase alph 100.0 8E-85 2.7E-89 697.3 27.8 316 2-318 188-510 (514)
2 2hhp_A Poly(A) polymerase; tem 100.0 6E-81 2E-85 669.5 28.1 309 2-314 175-530 (530)
3 4fh3_A Poly(A) RNA polymerase 99.9 6.3E-28 2.2E-32 243.4 12.1 169 9-178 132-348 (349)
4 2ikf_A RNA uridylyl transferas 99.9 1.8E-24 6.1E-29 220.8 6.8 152 11-163 158-349 (353)
5 4e8f_A Poly(A) RNA polymerase 99.9 1.8E-23 6.2E-28 217.9 12.6 171 14-185 165-383 (405)
6 3nyb_A Poly(A) RNA polymerase 99.9 2.7E-22 9.1E-27 203.0 9.4 148 12-164 138-298 (323)
7 2b4v_A RNA editing complex pro 99.7 8.2E-18 2.8E-22 178.7 6.9 152 15-166 253-441 (468)
8 3hj4_A Minor editosome-associa 99.4 3.7E-13 1.3E-17 140.0 11.8 163 14-178 134-379 (384)
9 3pq1_A Poly(A) RNA polymerase; 99.2 3.8E-11 1.3E-15 127.6 12.9 118 14-164 278-437 (464)
10 1r89_A TRNA nucleotidyltransfe 95.6 0.025 8.6E-07 60.0 8.2 173 20-230 133-319 (437)
11 1px5_A 2'-5'-oligoadenylate sy 92.1 1.2 4.2E-05 44.8 12.2 109 31-155 201-323 (349)
12 4at7_B NF90, interleukin enhan 34.7 2.2E+02 0.0076 29.7 10.7 122 9-163 203-328 (383)
13 2kng_A Protein LSR2; DNA-bindi 21.5 43 0.0015 26.1 1.9 19 38-56 15-33 (55)
No 1
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=100.00 E-value=8e-85 Score=697.31 Aligned_cols=316 Identities=45% Similarity=0.775 Sum_probs=284.9
Q ss_pred CcccCCChhhhhccchhhhHHHHHHhCCChHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHhhCCCCChHH
Q 010220 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNAIPSM 81 (514)
Q Consensus 2 siL~nLDe~svRSLNG~RVtd~ILrlVPn~e~FR~aLR~IKlWAKrRGIYSNv~GyLGGIsWAILVArVCQLyPnas~s~ 81 (514)
++|+|||++|+|||||+|++|+|+++||+.++||.++|+||+|||+||||+|.+||||||+||||||++||+|||+++++
T Consensus 188 ~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~llr~IK~Wak~Rgi~~~~~G~lgg~s~~lLVa~~~Ql~P~~s~~~ 267 (514)
T 1q79_A 188 SLLKNLDIRAIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNAIAST 267 (514)
T ss_dssp GGGTTCCHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHTTCBCTTTTSBCHHHHHHHHHHHHHHSTTCCHHH
T ss_pred hhhcccchhhhhhhhhHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCccccCCccHHHHHHHHHHHHHhCCCCCHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCceeccccccccCCCcccCCCCCCCCCCCcceeecCCCCCcccccccChhHHHHHHHHHHHHHHH
Q 010220 82 LVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPRDRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRI 161 (514)
Q Consensus 82 Ll~~FF~vyS~W~Wp~PV~L~~i~~~~lg~~vWdP~~~~rdr~hlMPIITPayP~~NSt~nVs~STl~vI~~Ef~Ra~~I 161 (514)
||.+||.+|++|+|++||+|++++++.+++++|||+.+++|+.|+|||+||+||++|+|+|||.+|+++|++||+||+++
T Consensus 268 LL~~FF~~y~~~dw~~pV~l~~~~~~~l~~~~w~p~~~~~dr~~~m~IidP~~P~~N~~~nVs~st~~~I~~Ef~rA~~i 347 (514)
T 1q79_A 268 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAI 347 (514)
T ss_dssp HHHHHHHHHHSCCTTSCBCSSCCCCCSSCCCCCCTTTCGGGGGCSSCBBCSSSSCCBTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCeEecccCCCCCCCcccCCccCCcCcccceeEeCCCCCCCcccccCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccchhhhcCCcchhhccccEEEEEEEeCChhhhhhhhhhhhhHHHHHHHHhhhcCCCceeecCCCCCCCCCCC
Q 010220 162 CEEIELNKAQWSALFEPYLFFEAYKNYLQVDIVAADADDLLTWKGWVESRFRQLTLKIERDTNGLLQCHPYPNEYIDPSK 241 (514)
Q Consensus 162 l~~i~~~~~~W~~Lfep~~FF~~Yk~YL~I~v~a~s~ed~~~W~GwVESRlR~Lv~~LE~~~~~~l~ahp~P~~f~d~~~ 241 (514)
+++|..++.+|++||+|++||.+|+|||+|+|++.+++++.+|.||||||||.|+.+||+. +.+..|||||++|.+...
T Consensus 348 l~~i~~~~~~w~~Lf~~~~ff~~y~~yl~v~~~a~~~~~~~~w~G~veSr~r~Lv~~le~~-~~i~~a~~~P~~f~~~~~ 426 (514)
T 1q79_A 348 TDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKN-EFITLAHVNPQSFPAPKE 426 (514)
T ss_dssp HHHHHTTSSCHHHHTCCCCHHHHCSEEEEEEEEESSHHHHHHHHHHHHTTHHHHHHHHHTS-TTEEEEEECSCCEECCCS
T ss_pred HHHHhcCCCCHHHHhCCcchhhhcceEEEEEEEECCHHHhhhheehhhhhHHHHHHHhccC-CCceeeecCccccCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999985 445569999999987643
Q ss_pred ----CCCcceEEEeeeecc---CCCCCcccccccHHHHHHHHHHHhhhcccCCceEEEEEeeccCCCCCccCCCCCcCCC
Q 010220 242 ----PCPNSAFFMGLRRKE---GVTGKERQQFDIRGTVDNFREEIGMYMFWKPGMDIYVSHVRRRQLPSFVFPDGYKRPR 314 (514)
Q Consensus 242 ----~~~~~~ffIGL~~~~---~~~~~~~~~~DL~~~v~eF~~~V~~~~~~~~gm~I~V~~Vkr~~LP~~V~~~g~~~~~ 314 (514)
..+.++|||||+++. ....+.+.++||+.++++|++.|++|..|++||+|+|+|||+++||++||++|+++++
T Consensus 427 ~~~~~~~~~~~~iGL~~~~~~~~~~~~~~~~~di~~~~~~F~~~~~~~~~~~~~~~i~v~~vk~~~Lp~~v~~~~~~~~~ 506 (514)
T 1q79_A 427 NPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLLPSHVLQKKK 506 (514)
T ss_dssp CTTSCCEEEEEEEEEEEC----------CCHHHHHHHHHHHHHHHHHTTCCCTTCEEEEEEEEHHHHGGGCC--------
T ss_pred cccCCceeEEEEEEEeecccccccccCcccccchHHHHHHHHHHHhhccccCCCcEEEEEEechHHCchhhcchhccCCC
Confidence 356789999999865 2222346779999999999999999999999999999999999999999999998887
Q ss_pred CCCC
Q 010220 315 PSRH 318 (514)
Q Consensus 315 ~~~~ 318 (514)
+.+.
T Consensus 507 ~~~~ 510 (514)
T 1q79_A 507 KHST 510 (514)
T ss_dssp ----
T ss_pred CCCc
Confidence 7543
No 2
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=100.00 E-value=6e-81 Score=669.49 Aligned_cols=309 Identities=39% Similarity=0.746 Sum_probs=288.1
Q ss_pred CcccCCChhhhhccchhhhHHHHHHhCCChHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHhhCCCCChHH
Q 010220 2 SVLNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNAIPSM 81 (514)
Q Consensus 2 siL~nLDe~svRSLNG~RVtd~ILrlVPn~e~FR~aLR~IKlWAKrRGIYSNv~GyLGGIsWAILVArVCQLyPnas~s~ 81 (514)
++|+|||++|+|||||+|++|+|+++||+.++||.++|+||+|||+||||+|.+|||||++|+||||++||+|||+++++
T Consensus 175 ~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~ll~~IK~Wak~Rgl~~~~~G~lgg~~~~~LVa~~lQl~P~~s~~~ 254 (530)
T 2hhp_A 175 NLLRNLDEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVARICQLYPNACSAV 254 (530)
T ss_dssp GGGTTCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHSTTCCHHH
T ss_pred hhhhccchhhhhccchHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCcccccCCcHHHHHHHHHHHHhcCCCCCHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCceeccccccccCCCcccCCCCCCCCCCCcceeecCCCCCcccccccChhHHHHHHHHHHHHHHH
Q 010220 82 LVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPRDRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRI 161 (514)
Q Consensus 82 Ll~~FF~vyS~W~Wp~PV~L~~i~~~~lg~~vWdP~~~~rdr~hlMPIITPayP~~NSt~nVs~STl~vI~~Ef~Ra~~I 161 (514)
||.+||.+|++|+|++||++++++++.+++++|+|+.|++|++|+|||+||+||++|+|+|||.+|+++|++||+||.++
T Consensus 255 LL~~FF~~y~~~dw~~pV~l~~~~~g~~~~~~w~p~~~~~d~~~~m~Ii~P~~P~~N~a~nVs~st~~~I~~Ef~rA~~l 334 (530)
T 2hhp_A 255 ILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITESTKKVILQEFVRGVQI 334 (530)
T ss_dssp HHHHHHHHHHHCCTTSCEESSCCCCCSSCSCCCCTTTCHHHHTCSSCEECSSSSCCBTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCceEecccCCCCccccccCcccCCCCCccceeEECCCCCCCccCccCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccchhhhcCCcchhhccccEEEEEEEeC-ChhhhhhhhhhhhhHHHHHHHHhhhcCCCceeecCCCCCCCCCC
Q 010220 162 CEEIELNKAQWSALFEPYLFFEAYKNYLQVDIVAA-DADDLLTWKGWVESRFRQLTLKIERDTNGLLQCHPYPNEYIDPS 240 (514)
Q Consensus 162 l~~i~~~~~~W~~Lfep~~FF~~Yk~YL~I~v~a~-s~ed~~~W~GwVESRlR~Lv~~LE~~~~~~l~ahp~P~~f~d~~ 240 (514)
++++..++.+|++||+|++||.+|+|||+|++++. +++++..|.||||||+|.|+.+||+ .+++..|||||++|.+..
T Consensus 335 l~~i~~~~~~w~~Lf~~~~ff~~y~~~l~i~~~~~g~~~~~~~w~G~veSr~r~Lv~~Le~-~~~i~~a~~~p~~f~~~~ 413 (530)
T 2hhp_A 335 TNDIFSNKKSWANLFEKNDFFFRYKFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKLEV-LAGIKIAHPFTKPFESSY 413 (530)
T ss_dssp HHHHHTTSSCHHHHTCCCCHHHHCSEEEEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHT-STTEEEEEECSSCEEEEE
T ss_pred HHHHhcCCCCHHHHcCCCChHHhcCeEEEEEEEecCCHHHHhhhcchHHHHHHHHHHHhhc-ccCceeeecCCcccCccc
Confidence 99999888999999999999999999999999997 9999999999999999999999998 567778999999984310
Q ss_pred -------------------------------------------CCCCcceEEEeeeeccCCCCCcccccccHHHHHHHHH
Q 010220 241 -------------------------------------------KPCPNSAFFMGLRRKEGVTGKERQQFDIRGTVDNFRE 277 (514)
Q Consensus 241 -------------------------------------------~~~~~~~ffIGL~~~~~~~~~~~~~~DL~~~v~eF~~ 277 (514)
...+.++|||||+++.. ..+.++||+.++++|++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igl~~~~~---~~~~~~di~~~~~~F~~ 490 (530)
T 2hhp_A 414 CCPTEDDYEMIQDKYGSHKTETALNALKLVTDENKEEESIKDAPKAYLSTMYIGLDFNIE---NKKEKVDIHIPCTEFVN 490 (530)
T ss_dssp ECCSSSHHHHHHHHCSCHHHHTTCCSCC---------------CEEEEEEEEEEEEEC-------CCCCCCHHHHHHHHH
T ss_pred cccchhhhhhhhccccccccccccccccccccccccccccccccceeeEEEEEEEeecCC---CCCceEeChhHHHHHHH
Confidence 12345799999998753 13568999999999999
Q ss_pred HHhhhcc-cCCc-eE-EEEEeeccCCCCCccCCCCCcCCC
Q 010220 278 EIGMYMF-WKPG-MD-IYVSHVRRRQLPSFVFPDGYKRPR 314 (514)
Q Consensus 278 ~V~~~~~-~~~g-m~-I~V~~Vkr~~LP~~V~~~g~~~~~ 314 (514)
.|++|.. |+++ |+ |.|+|||+++||++||++|++||+
T Consensus 491 ~~~~~~~~~~~~~~~~~~v~~v~~~~lp~~v~~~~~~~~~ 530 (530)
T 2hhp_A 491 LCRSFNEDYGDHKVFNLALRFVKGYDLPDEVFDENEKRPS 530 (530)
T ss_dssp HHHHTSTTTTCSSSEEEEEEEEEGGGCCGGGSCTTSCCCC
T ss_pred HHHhhhhhcccCCcceEEEEEechhhCCHhhccCCCcCCC
Confidence 9999997 8877 89 999999999999999999998864
No 3
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=99.95 E-value=6.3e-28 Score=243.38 Aligned_cols=169 Identities=18% Similarity=0.179 Sum_probs=136.3
Q ss_pred hhhhhccchhhhHHHHHHhCCChHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHhh------CCC------
Q 010220 9 EQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQL------YPN------ 76 (514)
Q Consensus 9 e~svRSLNG~RVtd~ILrlVPn~e~FR~aLR~IKlWAKrRGIYSNv~GyLGGIsWAILVArVCQL------yPn------ 76 (514)
+-|+...+|+|.++.|..+++....||.++++||+|||+||||++..|+|||++|+|||++.||. +|+
T Consensus 132 Dis~~~~~g~~~t~ll~~~~~~~~~~r~l~~~iK~wak~~~l~~~~~G~lssy~l~lmvi~fLQ~~~~pp~lP~l~~~~~ 211 (349)
T 4fh3_A 132 DIGFNNRLAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPL 211 (349)
T ss_dssp EEEESCHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTT
T ss_pred ecCcCcchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHcCCCCcCCCCCChHHHHHHHHHHHHhccCCCcCchhhhccc
Confidence 45778889999999999999999999999999999999999999999999999999999999984 343
Q ss_pred --------------------------CChHHHHHHHHHhhc-cCCCCCceecccccccc---------CCCcccCCCCCC
Q 010220 77 --------------------------AIPSMLVSRFFRVYT-QWRWPNPVMLCPIEEDE---------LGFSVWDPRKNP 120 (514)
Q Consensus 77 --------------------------as~s~Ll~~FF~vyS-~W~Wp~PV~L~~i~~~~---------lg~~vWdP~~~~ 120 (514)
.+.+.||..||++|+ .|+|+++|+......+- .....|++..+.
T Consensus 212 ~~~~~~~~~~~~f~~~~~~~~~~~n~~slg~LL~~FF~~Y~~~Fd~~~~vIsi~~~~~~~~k~~k~~~~~~~~~~~~~~~ 291 (349)
T 4fh3_A 212 KQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHTGSADQI 291 (349)
T ss_dssp CCCCEETTEECCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCTTTBCBCSSSTTCCCBHHHHTCC------------
T ss_pred cccccccCcccccccchhhcccccCcccHHHHHHHHHHHhhhccCCCCceEEecCCCCccchHHhcccccccccCccccc
Confidence 357899999999998 79999998875432211 112334455555
Q ss_pred CCCCCcceeecCCCCCcccccccChhHHHHHHHHHHHHHHHHHHHhhcccchhhhcCC
Q 010220 121 RDRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEP 178 (514)
Q Consensus 121 rdr~hlMPIITPayP~~NSt~nVs~STl~vI~~Ef~Ra~~Il~~i~~~~~~W~~Lfep 178 (514)
.+..++|+|++|++|.+|+|++|+..++..|++||+||++++.+.. .+.+|++|||.
T Consensus 292 ~~~~~~l~IeDPf~~~~Nvar~Vs~~~~~~I~~eF~~A~~~L~~~~-~~~~~~~lfe~ 348 (349)
T 4fh3_A 292 IKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRS-YPIPYDSLFEE 348 (349)
T ss_dssp ---CCSSCBBCSSSTTCBGGGGCCHHHHHHHHHHHHHHHHHHHCCS-SSCCGGGGGSC
T ss_pred CCCCceEEEECCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHhCcc-cCCCHHHHhhc
Confidence 5667899999999999999999999999999999999999998633 35689999985
No 4
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=99.90 E-value=1.8e-24 Score=220.77 Aligned_cols=152 Identities=16% Similarity=0.143 Sum_probs=127.0
Q ss_pred hhhccchhhhHHHHHHhCCChHHHHHHHHHHHHHHHHhccccccc-cccchHHHHHHHHHHHhh------CC--------
Q 010220 11 TVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVT-GFLGGVNWALLVARVCQL------YP-------- 75 (514)
Q Consensus 11 svRSLNG~RVtd~ILrlVPn~e~FR~aLR~IKlWAKrRGIYSNv~-GyLGGIsWAILVArVCQL------yP-------- 75 (514)
|+...+|++.++.|..++.....||.++++||+|||+||||++.. |+|||++|++||+++||. +|
T Consensus 158 s~~n~~g~~~t~ll~~~~~~~p~~r~l~~~iK~wa~~r~l~~~~~gG~lssy~l~lmvi~~LQ~~~~~P~lp~l~~~~~~ 237 (353)
T 2ikf_A 158 TAYRRNGVRNSALLRAYFEQNPPCRWLSMSIKRWSKQTGLNASVIGGSITSYGFNLMVVYYLLQRNHLQFVPPSTIDVSR 237 (353)
T ss_dssp EESCCHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCBTTSTTCCBCHHHHHHHHHHHHHHTTSSCCCCGGGCCGGG
T ss_pred EecCccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCCCCCCCCCCchHHHHHHHHHHHHHhcCCCCCcCccccChhh
Confidence 445688999999999999888899999999999999999999999 999999999999999984 33
Q ss_pred ----------------CCChHHHHHHHHHhhc-cCCCCCceeccccccccC--CCcccCCC------CCCCCCCCcceee
Q 010220 76 ----------------NAIPSMLVSRFFRVYT-QWRWPNPVMLCPIEEDEL--GFSVWDPR------KNPRDRSHHMPII 130 (514)
Q Consensus 76 ----------------nas~s~Ll~~FF~vyS-~W~Wp~PV~L~~i~~~~l--g~~vWdP~------~~~rdr~hlMPII 130 (514)
+.+++.|+..||++|+ +|+|+++|+..... +.+ ....|++. .++.++.+.|+|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~slg~LL~~Ff~~Y~~~fd~~~~vIsi~~~-~~~~k~~~~w~~~~~~~~~~~~~~~~~~l~Ie 316 (353)
T 2ikf_A 238 VEPLPPHLPLEEPADEGLELGTQVLDFLHFFLHEFDSDKQVISLNRP-GITTKEELDWTKSAEDFARMNGEKVHYQWCIE 316 (353)
T ss_dssp SCSSCCCCCCCCCTTTTHHHHHHHHHHHHHHHHTSCTTTEEECSSSS-SCEEHHHHTCSHHHHTTCEETTEECCCSSEEB
T ss_pred ccCCCcCCccccCCCCcccHHHHHHHHHHHhccccCcCceEEEcCCC-cceechhhcccccccccccccCCCCcceEEEE
Confidence 2346889999999999 89999998763211 111 11357642 2334567899999
Q ss_pred cCCCCCcccccccChhHHHHHHHHHHHHHHHHH
Q 010220 131 TPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICE 163 (514)
Q Consensus 131 TPayP~~NSt~nVs~STl~vI~~Ef~Ra~~Il~ 163 (514)
+|+.|.+|++++|+.+++..|++||+||++++.
T Consensus 317 DP~~~~~N~~r~v~~~~~~~i~~~f~~A~~~~~ 349 (353)
T 2ikf_A 317 DPYELNLNVGRNVTPLKRDFLRRHLEKARDTAL 349 (353)
T ss_dssp CSSSTTCBTTTTCCHHHHHHHHHHHHHHHTTTT
T ss_pred CCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998763
No 5
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=99.89 E-value=1.8e-23 Score=217.90 Aligned_cols=171 Identities=19% Similarity=0.210 Sum_probs=137.9
Q ss_pred ccchhhhHHHHHHhCCChHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHH-hh-----CCC-----------
Q 010220 14 SLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVC-QL-----YPN----------- 76 (514)
Q Consensus 14 SLNG~RVtd~ILrlVPn~e~FR~aLR~IKlWAKrRGIYSNv~GyLGGIsWAILVArVC-QL-----yPn----------- 76 (514)
..+|++.+..|..++.-...||.++++||+|||+||||++..|+|||++|++||++++ |. +|+
T Consensus 165 n~~g~~~t~ll~~y~~~~p~~r~Lv~~lK~wak~rgl~~~~~GglsSY~l~lmvi~fLqQ~~~ppvlP~Lq~~~~~~~~~ 244 (405)
T 4e8f_A 165 NRLAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKI 244 (405)
T ss_dssp CHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCTTTTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCE
T ss_pred ccchHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCcCcCCCcChHHHHHHHHHHHHhccCCCcCCchhhcccccccc
Confidence 3568999998888776667899999999999999999999999999999999999999 73 332
Q ss_pred ---------------------CChHHHHHHHHHhhc-cCCCCCceeccccccccCC--CcccCCCCC-------CCCCCC
Q 010220 77 ---------------------AIPSMLVSRFFRVYT-QWRWPNPVMLCPIEEDELG--FSVWDPRKN-------PRDRSH 125 (514)
Q Consensus 77 ---------------------as~s~Ll~~FF~vyS-~W~Wp~PV~L~~i~~~~lg--~~vWdP~~~-------~rdr~h 125 (514)
.+.+.|+..||++|+ .|+|.+.|+......+.+. .+.|+.... ..+.++
T Consensus 245 ~~g~~~~f~~~l~~~~~~~n~~slg~LL~~FF~yY~~~Fd~~~~vIsir~~g~~~~K~~k~w~~~~~~~g~~~~~~~~~~ 324 (405)
T 4e8f_A 245 VDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHTGSADQIIKDRY 324 (405)
T ss_dssp ETTEECCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCTTTBEECSSSTTCCCBHHHHTCCC-------------CCC
T ss_pred cCCeeeccccchhhhccccccccHHHHHHHHHHHHhcccCCCCcEEEEecCCcccccccccccccccccccccccccCCc
Confidence 457899999999999 9999999877441111111 245876521 124578
Q ss_pred cceeecCCCCCcccccccChhHHHHHHHHHHHHHHHHHHHhhcccchhhhcCCcchhhcc
Q 010220 126 HMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLFFEAY 185 (514)
Q Consensus 126 lMPIITPayP~~NSt~nVs~STl~vI~~Ef~Ra~~Il~~i~~~~~~W~~Lfep~~FF~~Y 185 (514)
.|+|.+|+.|.+|++++|+..++..|++||+||++++.+... +.+|+.||+++++..+.
T Consensus 325 ~L~IeDPf~~~~Nv~r~vs~~~~~~I~~eF~rA~~iL~~~~~-~~~w~~Lf~~~~~~~~~ 383 (405)
T 4e8f_A 325 ILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRSY-PIPYDSLFEEAPIPPRR 383 (405)
T ss_dssp SSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHHHHTCSSS-SCCGGGGGSCCCCC---
T ss_pred eEEEECCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhhcc-CCCHHHHhCcCCCcccc
Confidence 999999999999999999999999999999999999987532 57899999999998753
No 6
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2.7e-22 Score=203.05 Aligned_cols=148 Identities=19% Similarity=0.268 Sum_probs=125.0
Q ss_pred hhccchhhhHHHHHHhCCChHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHhhCCCC---------ChHHH
Q 010220 12 VRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNA---------IPSML 82 (514)
Q Consensus 12 vRSLNG~RVtd~ILrlVPn~e~FR~aLR~IKlWAKrRGIYSNv~GyLGGIsWAILVArVCQLyPna---------s~s~L 82 (514)
.-..+|+|.++.|.++++....||.++++||+|||+||||++..|+|||++|++||+++||++|+. +.+.|
T Consensus 138 ~~~~~g~~~t~li~~~~~~~~~~r~lv~~iK~wak~r~l~~~~~G~lssy~l~lmvi~fLQ~~p~~~~~~~~~~~~lg~L 217 (323)
T 3nyb_A 138 FERTNGIEAAKLIREWLDDTPGLRELVLIVKQFLHARRLNNVHTGGLGGFSIICLVFSFLHMHPRIITNEIDPKDNLGVL 217 (323)
T ss_dssp SSCSSTTHHHHHHHHHHHSCTTHHHHHHHHHHHHHHTTCSCGGGTCCCHHHHHHHHHHHHHTCHHHHTTCBCGGGCHHHH
T ss_pred ecCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCCccCCCcCHHHHHHHHHHHHHhCCccCcccCCccccHHHH
Confidence 445799999999999999999999999999999999999999999999999999999999999853 45789
Q ss_pred HHHHHHhhc-cCCCCCceecccccccc---CCCcccCCCCCCCCCCCcceeecCCCCCcccccccChhHHHHHHHHHHHH
Q 010220 83 VSRFFRVYT-QWRWPNPVMLCPIEEDE---LGFSVWDPRKNPRDRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWG 158 (514)
Q Consensus 83 l~~FF~vyS-~W~Wp~PV~L~~i~~~~---lg~~vWdP~~~~rdr~hlMPIITPayP~~NSt~nVs~STl~vI~~Ef~Ra 158 (514)
|..||++|+ +|+|++.++... .+. ..-..|+.. ++..+.+.|+|++|+.|..|.++++ ...+.|++||++|
T Consensus 218 L~~Ff~~Y~~~Fd~~~~~Isv~--~g~~~~~~k~~~~~~-~~~~~~~~l~IeDP~~~~~nigr~~--~~~~~I~~~F~~A 292 (323)
T 3nyb_A 218 LIEFFELYGKNFGYDDVALGSS--DGYPVYFPKSTWSAI-QPIKNPFSLAIQDPGDESNNISRGS--FNIRDIKKAFAGA 292 (323)
T ss_dssp HHHHHHHHHHTCCTTTEEEEES--SSCEEEEEGGGCGGG-CSCSCSSSCCBEETTEEEEETTTTC--TTHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCCcEEEEe--cCCcceeeHHhcccc-cccCCCceEEEeCCCCCCcccccch--HHHHHHHHHHHHH
Confidence 999999999 999999877532 121 112456542 2223467899999999999999985 4688999999999
Q ss_pred HHHHHH
Q 010220 159 NRICEE 164 (514)
Q Consensus 159 ~~Il~~ 164 (514)
.+++.+
T Consensus 293 ~~~L~~ 298 (323)
T 3nyb_A 293 FDLLTN 298 (323)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999986
No 7
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=99.70 E-value=8.2e-18 Score=178.66 Aligned_cols=152 Identities=16% Similarity=0.156 Sum_probs=115.9
Q ss_pred cchhhhHHHHHHhCCChHH-HHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHhhC-----------------CC
Q 010220 15 LNGCRVADQILKHVPNVEH-FRMTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLY-----------------PN 76 (514)
Q Consensus 15 LNG~RVtd~ILrlVPn~e~-FR~aLR~IKlWAKrRGIYSNv~GyLGGIsWAILVArVCQLy-----------------Pn 76 (514)
.+|++.++.|...+--... ||.+..+||+|||+|||++...|+||+++|++||.+..|.. |+
T Consensus 253 ~~gi~nS~ll~~y~~~dpr~~r~Lvl~vK~Wak~r~Ln~~~~G~LsSYal~lMVI~fLQ~~~~lP~v~P~vlP~lq~l~~ 332 (468)
T 2b4v_A 253 GYGVKNSYLIRHYLHNGPVAARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLLVTRQVLWVDPWSLPHPAHLPR 332 (468)
T ss_dssp SHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHTCC-----CCSSCHHHHHHHHHHHHHHTTSSCCCCGGGSCCGGGSCS
T ss_pred hhHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHHhcCcCCCCCcccccchhhccc
Confidence 6899999987776554456 99999999999999999999999999999999999998753 21
Q ss_pred ------------CChHHHHHHHHHhhc-cCCCCCceecccccc-ccCCCcccCCCCCC-CCCCCcceeecCCCC----Cc
Q 010220 77 ------------AIPSMLVSRFFRVYT-QWRWPNPVMLCPIEE-DELGFSVWDPRKNP-RDRSHHMPIITPAYP----CM 137 (514)
Q Consensus 77 ------------as~s~Ll~~FF~vyS-~W~Wp~PV~L~~i~~-~~lg~~vWdP~~~~-rdr~hlMPIITPayP----~~ 137 (514)
.+.+.||..||++|+ .|+|.+.|+...... -......|+...+. ....+.|+|.+|+.| ..
T Consensus 333 ~~~~~p~~~~n~~sLg~LL~~FF~yYg~~Fd~~~~vISir~g~~~~K~~~~w~~~~n~~~~~~~~L~IeDPfd~~~~~~~ 412 (468)
T 2b4v_A 333 YPDFSPLYDCDPTELGRLLHGFFIFYAHHFDYEREVVSLNRNRRSYRSDIGWNFPQNKKGTFSYNFCIEDPYEDVGTGGL 412 (468)
T ss_dssp SCCCCCCCCCCHHHHHHHHHHHHHHHHHSSCTTTEEBCSSSSSCEEHHHHTCCCGGGEETTEECSSCBBCSSTTTTTTCC
T ss_pred ccCCCcccccCccCHHHHHHHHHHHHccccCCCCcEEEecCCcceecccccccccccccCCCcceEEEECCCCCCCCCCc
Confidence 136789999999999 999999877432110 00111347642221 122457999999999 99
Q ss_pred ccccccChhHHHHHHHHHHHHHHHHHHHh
Q 010220 138 NSSYNVSLSTLRVMTEQFQWGNRICEEIE 166 (514)
Q Consensus 138 NSt~nVs~STl~vI~~Ef~Ra~~Il~~i~ 166 (514)
|++++|+..+++.|++||++|+++|+...
T Consensus 413 Nvgr~v~~~~~~~I~~eF~~A~~~L~~~~ 441 (468)
T 2b4v_A 413 NLVRHLHPAKFQLVKQEFLRAAQCMERFL 441 (468)
T ss_dssp BTTTTCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999998743
No 8
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=99.43 E-value=3.7e-13 Score=140.02 Aligned_cols=163 Identities=13% Similarity=0.191 Sum_probs=123.2
Q ss_pred ccchhhhHHHHHHhCCC-hHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHhhC---CCC------------
Q 010220 14 SLNGCRVADQILKHVPN-VEHFRMTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLY---PNA------------ 77 (514)
Q Consensus 14 SLNG~RVtd~ILrlVPn-~e~FR~aLR~IKlWAKrRGIYSNv~GyLGGIsWAILVArVCQLy---Pna------------ 77 (514)
..+|++.+..|....-- ...||.++.+||+||++|||+++..|.||+++|++||++.+|.. |+-
T Consensus 134 n~~gi~ns~ll~~y~~~~p~rlr~LvllvK~Wak~rgLn~~~~GgLsSYaL~lMVI~fLQ~~~vLP~Lq~~~~~~~~~~~ 213 (384)
T 3hj4_A 134 NIGGVENSKILCAIRQVFPDFYGAYIHLVKAWGKAREVIAPERSTFNSFTVTTMALMVLQELGLLPVFSKPTGEFGELTV 213 (384)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHTTSBCGGGTSBCHHHHHHHHHHHHHHHTSSCCCCCCCSTTSCCCH
T ss_pred ccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHhcCCCCCccccccccCCcccc
Confidence 34689988888777665 45799999999999999999999999999999999999999963 221
Q ss_pred ------------------------ChHHH----HHHHHHhhccCCCCCceecc-ccccc-c---------------CCCc
Q 010220 78 ------------------------IPSML----VSRFFRVYTQWRWPNPVMLC-PIEED-E---------------LGFS 112 (514)
Q Consensus 78 ------------------------s~s~L----l~~FF~vyS~W~Wp~PV~L~-~i~~~-~---------------lg~~ 112 (514)
+...| +..||+||+.|+|.+-|+-- ++... . ..-+
T Consensus 214 ~~~~~~~~~~~l~~~~~~~s~N~~sLgeL~~~lL~~Ff~yY~~Fdf~~~vISi~~p~~~~~~~~~~~~~~~~~~~~~~~~ 293 (384)
T 3hj4_A 214 ADAEMLLQEFKLPPIYDSLHDDDEKLGEAVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHRTVYERVVRRHLELLGSRKRL 293 (384)
T ss_dssp HHHHHHHTTCCCCGGGGGCSSCHHHHHHHHHHHHHHHHHHHHHCCTTTBCBCSSSTTCBHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHhhhhhhcCCCCcCcCCCCcccHHHHHHHHHHHHHHHheecCCCCCEEEecCCcccccccchhhhhhhhhccchhhh
Confidence 13345 88999999999999866553 22111 0 0012
Q ss_pred ccC-----C-CC----------------CCCCCCCcceeecCCCCCcccccccChhHHHHHHHHHHHHHHHHHHHhhccc
Q 010220 113 VWD-----P-RK----------------NPRDRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKA 170 (514)
Q Consensus 113 vWd-----P-~~----------------~~rdr~hlMPIITPayP~~NSt~nVs~STl~vI~~Ef~Ra~~Il~~i~~~~~ 170 (514)
.|. | .. -.+..+.++.|-. +--..|+++.|+.+....|++||+||++|+.+=+ +..
T Consensus 294 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 371 (384)
T 3hj4_A 294 EWEKHIAEHKEDGPLDENDFSASMQNETTQRPSNSPYVVED-FVNYVNCGRRVQASRVRHIQQEFNRLREMLIDKE-SEL 371 (384)
T ss_dssp HHHHHHHHSGGGCSCCHHHHHHHHHHHHHTSCSSSSCCBBC-TTTCCBTTTTSCGGGHHHHHHHHHHHHHHHTTTG-GGC
T ss_pred hhhhhhhccccCCCCCCCccccccCccccccccccceeeee-eccccccceecCccchhHHHHHHHHHHHHHhccc-ccc
Confidence 343 0 00 1244578899999 9999999999999999999999999999997522 244
Q ss_pred chhhhcCC
Q 010220 171 QWSALFEP 178 (514)
Q Consensus 171 ~W~~Lfep 178 (514)
+.+++|..
T Consensus 372 ~~~~~~~~ 379 (384)
T 3hj4_A 372 KFDEVFRE 379 (384)
T ss_dssp CHHHHTCC
T ss_pred cHHHHhhh
Confidence 67777644
No 9
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=99.23 E-value=3.8e-11 Score=127.64 Aligned_cols=118 Identities=14% Similarity=0.196 Sum_probs=94.4
Q ss_pred ccchhhhHHHHHHhCCChHHHHHHHHHHHHHHHHhccccccccc-cchHHHHHHHHHHHhhC-----CC-----------
Q 010220 14 SLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGF-LGGVNWALLVARVCQLY-----PN----------- 76 (514)
Q Consensus 14 SLNG~RVtd~ILrlVPn~e~FR~aLR~IKlWAKrRGIYSNv~Gy-LGGIsWAILVArVCQLy-----Pn----------- 76 (514)
-.+|++.+..|....--...||.+..+||.|||+|||.+...|. ||+++|++||...+|.. |+
T Consensus 278 n~~gi~ns~ll~~y~~~dprlr~Lvl~vK~Wak~r~Ln~~~~Gg~LsSYsL~lMVI~fLQ~~~ppvLP~Lq~l~~~~~~~ 357 (464)
T 3pq1_A 278 NRIALTSSELLYIYGALDSRVRALVFSVRCWARAHSLTSSIPGAWITNFSLTMMVIFFLQRRSPPILPTLDSLKTLADAE 357 (464)
T ss_dssp CTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSSCC--CCSCCHHHHHHHHHHHHHSCC-------CCSHHHHTTC
T ss_pred CCcHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHhCCCccccCCCcCcHHHHHHHHHHHHccCCCcCCChHHhccccCcc
Confidence 35699999888887766689999999999999999999999995 99999999999999974 21
Q ss_pred -------------------------CChHHHHHHHHHhhccCCCCCceeccccccccCCCcccCCCCCCCCCCCcceeec
Q 010220 77 -------------------------AIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPRDRSHHMPIIT 131 (514)
Q Consensus 77 -------------------------as~s~Ll~~FF~vyS~W~Wp~PV~L~~i~~~~lg~~vWdP~~~~rdr~hlMPIIT 131 (514)
.+...|+..||+||++|||.+-|+- |
T Consensus 358 ~~~~vdg~~~~F~~dl~~l~~~~N~~slgeLL~gFF~yYa~FDf~~~vIs---------------------------I-- 408 (464)
T 3pq1_A 358 DKCVIEGNNCTFVRDLSRIKPSQNTETLELLLKEFFEYFGNFAXXXXXXX---------------------------X-- 408 (464)
T ss_dssp ---------------------CCCCCCHHHHHHHHHHHGGGCCCCCCCCC---------------------------C--
T ss_pred cceeeccccccccccHhhcCCCCCcCCHHHHHHHHHHHHHhCCCcccccc---------------------------c--
Confidence 1347899999999999999876653 1
Q ss_pred CCCCCcccccccChhHHHHHHHHHHHHHHHHHH
Q 010220 132 PAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEE 164 (514)
Q Consensus 132 PayP~~NSt~nVs~STl~vI~~Ef~Ra~~Il~~ 164 (514)
..|.+.||+.+.+..++.|+++|.-||+.
T Consensus 409 ----~~Nvs~nV~~~~~~r~~~~~r~a~~il~~ 437 (464)
T 3pq1_A 409 ----XXXXXXXVSQSQLQKFVDLARESAWILQQ 437 (464)
T ss_dssp ----C-------CHHHHHHHHHHHHHHHHHHHC
T ss_pred ----ccccccccCHHHHHHHHHHHHHHHHHHhh
Confidence 79999999999999999999999999984
No 10
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=95.57 E-value=0.025 Score=59.96 Aligned_cols=173 Identities=17% Similarity=0.128 Sum_probs=109.3
Q ss_pred hHHHHHHhCCChHHHHHHHHHHHHHHHHhccccc--cccccchHHHHHHHHHHHhhCCCCChHHHHHHHHHhhccCCCCC
Q 010220 20 VADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSN--VTGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPN 97 (514)
Q Consensus 20 Vtd~ILrlVPn~e~FR~aLR~IKlWAKrRGIYSN--v~GyLGGIsWAILVArVCQLyPnas~s~Ll~~FF~vyS~W~Wp~ 97 (514)
-++++.+...+ +....|.+|.|.|.-|+|++ ..+-+.|+..=+|+++. .+-..+|..+ + +|-.
T Consensus 133 H~~fv~~r~~~---~~~~VRLLK~f~k~~~~ygse~k~~gfSsYllELLv~~y------G~f~~vl~~~----~--~w~~ 197 (437)
T 1r89_A 133 HHKWLEGRIKG---KENEVRLLKGFLKANGIYGAEYKVRGFSGYLCELLIVFY------GSFLETVKNA----R--RWTR 197 (437)
T ss_dssp HHHHHTTTSTT---CHHHHHHHHHHHHHTTCBCCSTTTCCBCHHHHHHHHHHH------SSHHHHHHHH----T--TCCT
T ss_pred HHHHHHhhhhh---hhhHHHHHHHHHHhCCcCCCcccCCCCCHHHHHHHHHHH------cCHHHHHHHH----H--HhCC
Confidence 45566555444 88999999999999999998 45569999999999993 1223334433 3 4544
Q ss_pred ceeccccccccCCCcccCCCCCCCCCCCcceeecCCCCCcccccccChhHHHHHHHHHHHHHHHHHHHhhcccchhhhcC
Q 010220 98 PVMLCPIEEDELGFSVWDPRKNPRDRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFE 177 (514)
Q Consensus 98 PV~L~~i~~~~lg~~vWdP~~~~rdr~hlMPIITPayP~~NSt~nVs~STl~vI~~Ef~Ra~~Il~~i~~~~~~W~~Lfe 177 (514)
++.++-. .. ......++.||.|+-|..|.|.++|.-.+..+..+-+... .. +=.++|.
T Consensus 198 ~~~Id~~-~~------------~~~~~~PlvViDPvDp~rNVAa~~s~~~~~~~~~~a~~~l---~~------ps~~~f~ 255 (437)
T 1r89_A 198 RTVIDVA-KG------------EVRKGEEFFVVDPVDEKRNVAANLSLDNLARFVHLCREFM---EA------PSLGFFK 255 (437)
T ss_dssp TEEEEGG-GT------------EEEECSSCEEEETTEEEEETTTTCCHHHHHHHHHHHHHHH---HS------CCGGGGS
T ss_pred CeEEecC-CC------------cccCCCCEEEECCCCCCCchhhcCCHHHHHHHHHHHHHHH---hC------ccHHhcC
Confidence 7665321 00 1112357899999999999999999999888887654322 11 2223443
Q ss_pred Ccc--------hh---h-ccccEEEEEEEeCChhhhhhhhhhhhhHHHHHHHHhhhcCCCceeec
Q 010220 178 PYL--------FF---E-AYKNYLQVDIVAADADDLLTWKGWVESRFRQLTLKIERDTNGLLQCH 230 (514)
Q Consensus 178 p~~--------FF---~-~Yk~YL~I~v~a~s~ed~~~W~GwVESRlR~Lv~~LE~~~~~~l~ah 230 (514)
|.+ +- + +=.+.+.|....++.-+= ..-|-++--.+.|...||+....++...
T Consensus 256 ~~~~~~~~~~~~~~~~~~r~t~~~~~~f~~p~~~~D-~l~pQl~k~~~~i~~~L~~~gF~v~~~~ 319 (437)
T 1r89_A 256 PKHPLEIEPERLRKIVEERGTAVFAVKFRKPDIVDD-NLYPQLERASRKIFEFLERENFMPLRSA 319 (437)
T ss_dssp CCCCCCCCHHHHHHHHHHHTCEEEEEEEECCSCCHH-HHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCccccCHHHHHHHHHhCCcEEEEEEECCCCCCcc-cchHHHHHHHHHHHHHHHHCCCEEEEec
Confidence 321 11 1 122466666655443222 2347777777777788888766655443
No 11
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=92.15 E-value=1.2 Score=44.85 Aligned_cols=109 Identities=10% Similarity=0.138 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHhhCCCC---ChHHHHHHHHHhhccCCCCCceeccccccc
Q 010220 31 VEHFRMTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNA---IPSMLVSRFFRVYTQWRWPNPVMLCPIEED 107 (514)
Q Consensus 31 ~e~FR~aLR~IKlWAKrRGIYSNv~GyLGGIsWAILVArVCQLyPna---s~s~Ll~~FF~vyS~W~Wp~PV~L~~i~~~ 107 (514)
...|+.+.|.+|.|-++.+. ....+.+.|+.+-+|++++....++. ..+.-+.++|...++|. +..|.
T Consensus 201 ~~~~k~lIRLlK~W~~~~~~-~~~~~~~ssy~lELL~~~a~e~~~~~~~~~~~~~f~~vle~l~~~~-~~~i~------- 271 (349)
T 1px5_A 201 PTKLKSLIRLVKHWYQTCKK-THGNKLPPQYALELLTVYAWEQGSRKTDFSTAQGFQTVLELVLKHQ-KLCIF------- 271 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHHT-TCSSCCCCHHHHHHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHTGG-GCEEC-------
T ss_pred cHHHHHHHHHHHHHHHHhhh-cccCCCCChHHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCC-cccee-------
Confidence 46899999999999988774 22356789999999999988776654 34556788888888874 12222
Q ss_pred cCCCcccCCCCCCCC-----------CCCcceeecCCCCCcccccccChhHHHHHHHHH
Q 010220 108 ELGFSVWDPRKNPRD-----------RSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQF 155 (514)
Q Consensus 108 ~lg~~vWdP~~~~rd-----------r~hlMPIITPayP~~NSt~nVs~STl~vI~~Ef 155 (514)
|....+..+ +...--|+.|+-|.-|.+.. +.-....+..|-
T Consensus 272 ------w~~~y~~~~~~~~~fl~~~l~~~~p~I~DP~dp~~NVa~~-~~~~~~~~~~~A 323 (349)
T 1px5_A 272 ------WEAYYDFTNPVVGRCMLQQLKKPRPVILDPADPTGNVGGG-DTHSWQRLAQEA 323 (349)
T ss_dssp ------CCSSCCSSSHHHHHHHHHHHTSSSCEEBCTTCTTCBTTCS-CHHHHHHHHHHH
T ss_pred ------eeccccccchhHHhhhhhhhcCCCCeeeCCCCCCCcccCC-chhhHHHHHHHH
Confidence 221111111 01123599999999998877 777777666433
No 12
>4at7_B NF90, interleukin enhancer-binding factor 3; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_B* 4at9_B* 4atb_B*
Probab=34.75 E-value=2.2e+02 Score=29.70 Aligned_cols=122 Identities=16% Similarity=0.183 Sum_probs=76.1
Q ss_pred hhhhhccchhhhHHHHHHhCCChHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHhhCCC--CChHHHHHHH
Q 010220 9 EQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPN--AIPSMLVSRF 86 (514)
Q Consensus 9 e~svRSLNG~RVtd~ILrlVPn~e~FR~aLR~IKlWAKrRGIYSNv~GyLGGIsWAILVArVCQLyPn--as~s~Ll~~F 86 (514)
..|+.+|-..|=+........+......++|.+|.-.+|.--+ +-|.+.+.-+|+-+.-- -++ .+++.-+.||
T Consensus 203 ~~cl~aLAalRhAkWFqara~~l~s~~ilIRilkdlc~R~~~~----~pL~~waLELL~~~ai~-s~~~~l~~~~afRRV 277 (383)
T 4at7_B 203 QKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVPTW----GPLRGWPLELLCEKSIG-TANRPMGAGEALRRV 277 (383)
T ss_dssp HHHHHHHHHHHHHHHCCCCCTTSTTHHHHHHHHHHHHHHCGGG----GGGTTHHHHHHHHHHHH-TSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHhcccCCCceEEeehhhHHHHhcCCc----CCCcHhHHHHHHHHHhh-CCCCCCCHHHHHHHH
Confidence 3477777777777777666666666677888888866665332 45664444455555443 333 4577889999
Q ss_pred HHhhcc-CCCCC-ceeccccccccCCCcccCCCCCCCCCCCcceeecCCCCCcccccccChhHHHHHHHHHHHHHHHHH
Q 010220 87 FRVYTQ-WRWPN-PVMLCPIEEDELGFSVWDPRKNPRDRSHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICE 163 (514)
Q Consensus 87 F~vyS~-W~Wp~-PV~L~~i~~~~lg~~vWdP~~~~rdr~hlMPIITPayP~~NSt~nVs~STl~vI~~Ef~Ra~~Il~ 163 (514)
|...|. +--|. |++++|.+.+ |.-|.+ ..|.-....|..+-+.+.+++.
T Consensus 278 LEllasG~lLp~~pgI~DPcEk~---------------------------pt~~~~-~lt~qq~e~it~sAQ~~LR~~a 328 (383)
T 4at7_B 278 LECLASGIVMPDGSGIYDPCEKE---------------------------ATDAIG-HLDRQQREDITQSAQHALRLAA 328 (383)
T ss_dssp HHHHHTTTTSTTSCCCBCTTCSS---------------------------CCBTTT-TCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcccCCCCCccCCCCCC---------------------------Cccccc-cCCHHHHHHHHHHHHHHHHHHh
Confidence 999884 33332 5555544321 433444 5566667888888777777664
No 13
>2kng_A Protein LSR2; DNA-binding domain, immune response, DNA binding protein; NMR {Mycobacterium tuberculosis}
Probab=21.48 E-value=43 Score=26.06 Aligned_cols=19 Identities=26% Similarity=0.583 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhcccccccc
Q 010220 38 LRCLKFWAKRRGVYSNVTG 56 (514)
Q Consensus 38 LR~IKlWAKrRGIYSNv~G 56 (514)
.++|+.||+..|+==+--|
T Consensus 15 ~~aIR~WAr~nG~~VsdRG 33 (55)
T 2kng_A 15 SAAIREWARRNGHNVSTRG 33 (55)
T ss_dssp HHHHHHHHHHTTCCCCSSS
T ss_pred hHHHHHHHHHcCCcCCCCC
Confidence 6799999999987544433
Done!